BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase
MnmA [Candidatus Liberibacter asiaticus str. psy62]
         (408 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039828|gb|ACT56624.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|255957544|dbj|BAH96607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957840|dbj|BAH96814.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957850|dbj|BAH96823.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957860|dbj|BAH96832.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957870|dbj|BAH96841.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957880|dbj|BAH96850.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957890|dbj|BAH96859.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957900|dbj|BAH96868.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957910|dbj|BAH96877.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957920|dbj|BAH96886.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957930|dbj|BAH96895.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957940|dbj|BAH96904.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957950|dbj|BAH96913.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957960|dbj|BAH96922.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957970|dbj|BAH96931.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957980|dbj|BAH96940.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957990|dbj|BAH96949.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958000|dbj|BAH96958.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958010|dbj|BAH96967.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958020|dbj|BAH96976.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958030|dbj|BAH96985.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958040|dbj|BAH96994.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958050|dbj|BAH97003.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958060|dbj|BAH97012.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958070|dbj|BAH97021.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958080|dbj|BAH97030.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958090|dbj|BAH97039.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958100|dbj|BAH97048.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958110|dbj|BAH97057.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958120|dbj|BAH97066.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|283362130|dbj|BAI65917.1| predicted tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Liberibacter asiaticus]
 gi|283362140|dbj|BAI65926.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362150|dbj|BAI65935.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362160|dbj|BAI65944.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362170|dbj|BAI65953.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362180|dbj|BAI65962.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362190|dbj|BAI65971.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362200|dbj|BAI65980.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362210|dbj|BAI65989.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362220|dbj|BAI65998.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362230|dbj|BAI66007.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
          Length = 408

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/408 (100%), Positives = 408/408 (100%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA
Sbjct: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC
Sbjct: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT
Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA
Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV
Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
           HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA
Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
           SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408


>gi|140063954|gb|ABO82466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Liberibacter asiaticus]
          Length = 408

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/408 (99%), Positives = 408/408 (100%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT+QLYNSRKA
Sbjct: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTVQLYNSRKA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC
Sbjct: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT
Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA
Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV
Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
           HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA
Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
           SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408


>gi|110808325|gb|ABG91067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Liberibacter asiaticus]
          Length = 357

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/357 (99%), Positives = 357/357 (100%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           +QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG
Sbjct: 1   VQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 60

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
           ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER
Sbjct: 61  ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 120

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231
           DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV
Sbjct: 121 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 180

Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
           VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI
Sbjct: 181 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 240

Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351
           VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD
Sbjct: 241 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 300

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
           FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 301 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 357


>gi|315122753|ref|YP_004063242.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496155|gb|ADR52754.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 398

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/392 (83%), Positives = 360/392 (91%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD DKNPKDMRVVVAMSGGVDSS+VAALLKRDGYDV+GVTLQLYN  K SKRKGSCC
Sbjct: 1   MNSLDFDKNPKDMRVVVAMSGGVDSSIVAALLKRDGYDVVGVTLQLYNGGKESKRKGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQDVYDARRVCD I+V HYVFDYEERF NAVIVPFA++Y AGETPLPCVDCNRTVKF D
Sbjct: 61  AGQDVYDARRVCDAIDVPHYVFDYEERFHNAVIVPFANAYIAGETPLPCVDCNRTVKFLD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLSV R+LGADVLATGHYIRSR +VG DG RRRIMCRP+D ERDQSYFLFATTQQQLCDL
Sbjct: 121 LLSVMRRLGADVLATGHYIRSRFHVGADGVRRRIMCRPVDSERDQSYFLFATTQQQLCDL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+MKKESVRDLAREM L++ADKSDSQDICFVQ+GKYFD+VK++++ I+LEG+IVHL
Sbjct: 181 RFPLGEMKKESVRDLAREMKLEVADKSDSQDICFVQKGKYFDIVKKLSSDISLEGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQ+LGRHNGIINYTIGQRRGLG+A  +PLFVVYLDK  SRVIVGPRE+LEV RIYLREI
Sbjct: 241 SGQVLGRHNGIINYTIGQRRGLGIAASDPLFVVYLDKQGSRVIVGPREALEVRRIYLREI 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG FED VVDGFKCF KIRSSQDPV VFV+R+D GVYVDFE SE GVA+GQACVFY
Sbjct: 301 NWLGDGSFEDVVVDGFKCFAKIRSSQDPVSVFVKRDDSGVYVDFENSEEGVAAGQACVFY 360

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           +SDSN+AR+LGGG IS SKRSD VE+SL S++
Sbjct: 361 SSDSNDARILGGGFISCSKRSDKVEKSLFSIM 392


>gi|222086955|ref|YP_002545489.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Agrobacterium radiobacter K84]
 gi|254811443|sp|B9J9F7|MNMA_AGRRK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221724403|gb|ACM27559.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Agrobacterium radiobacter K84]
          Length = 399

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/393 (61%), Positives = 298/393 (75%), Gaps = 1/393 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEDTRVVVAMSGGVDSSVVAGILKRQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     D   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSADHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K   R LA EMGL +A K+DSQDICFV QGKY DV+ ++    AL G+IVHL
Sbjct: 181 RFPLGGMPKAETRALAEEMGLVVAKKADSQDICFVPQGKYSDVIAKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI++YTIGQRRG+GVA G+PL+VV+LD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGRHEGILHYTIGQRRGIGVATGDPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD  L E A  +GF C+ K+RS++ P P  ++ + DG+YVD    E GVA GQAC  
Sbjct: 301 NWLGDEPLLEAASGEGFACYAKVRSTRPPEPAVLRADKDGIYVDLTIGEAGVAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y++  ++ARV GGG I  S+R    E SL +++
Sbjct: 361 YSAPGDDARVYGGGFIERSEREPMAEASLKALL 393


>gi|222149632|ref|YP_002550589.1| tRNA-specific 2-thiouridylase MnmA [Agrobacterium vitis S4]
 gi|221736614|gb|ACM37577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium vitis S4]
          Length = 402

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/392 (60%), Positives = 295/392 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 5   VNTLDFDKRPEDTRVVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 64

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR+ VI PF  SY AGETP+PCV CN+TVKF+D
Sbjct: 65  AGQDIDDARRVCETLGIPHYVLDYEQRFRDTVINPFMDSYIAGETPIPCVACNQTVKFAD 124

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR     +    R + RP+D ERDQSYFLFATTQ+Q+  L
Sbjct: 125 LLATARELGADALATGHYIRSRATPLPNDPGHRALFRPIDSERDQSYFLFATTQEQIDYL 184

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA +MGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL
Sbjct: 185 RFPLGGLSKAETRKLAEDMGLVVAQKADSQDICFVPQGKYADIINKLKPNAALSGDIVHL 244

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI++YTIGQR+GLGVA GEPL+VVYLD  S RVIVGPRE+LE  R+YLR+I
Sbjct: 245 DGRVLGQHEGILHYTIGQRKGLGVATGEPLYVVYLDARSRRVIVGPREALETRRVYLRDI 304

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ED    GF CF K+RS++ P P  +  ++ G+YVD +  E GVA GQACV Y
Sbjct: 305 NWLGDRAIEDEASGGFACFAKVRSTRPPAPAHLHADETGIYVDLDMGEAGVAPGQACVLY 364

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           + +  +ARV GGG I  S+R    E  L +++
Sbjct: 365 SGEGADARVYGGGFIERSERQAEAETFLKALL 396


>gi|190893264|ref|YP_001979806.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CIAT 652]
 gi|229486418|sp|B3PYW4|MNMA_RHIE6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190698543|gb|ACE92628.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 408

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/396 (59%), Positives = 296/396 (74%), Gaps = 1/396 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD  L E A  +GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 307 RDVNWLGDETLGEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           C  Y++  ++ARV GGG I  S+R  A E SL +++
Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPAAEASLKALL 402


>gi|327192984|gb|EGE59899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 399

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/393 (59%), Positives = 295/393 (75%), Gaps = 1/393 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD  L E A  DGF C+ K+RS++ P P  +  +  G YVD    E G+A GQAC  
Sbjct: 301 NWLGDETLAEAASGDGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y++  ++ARV GGG I  S+R  A E SL +++
Sbjct: 361 YSAPGDDARVFGGGFIERSEREPAAEASLKALL 393


>gi|86359043|ref|YP_470935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli CFN 42]
 gi|123510891|sp|Q2K4M8|MNMA_RHIEC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86283145|gb|ABC92208.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseprotein
           [Rhizobium etli CFN 42]
          Length = 408

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/396 (58%), Positives = 295/396 (74%), Gaps = 1/396 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DAR VC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARHVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSSEHPGRRALFRPADADRDQSYFLFATTQEQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD  L E A  +GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 307 RDVNWLGDETLAEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTIGEAGIAPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           C  Y++  ++ARV GGG I  S+R  + E SL +++
Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPSAEASLKALL 402


>gi|218675488|ref|ZP_03525157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli GR56]
          Length = 399

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/393 (58%), Positives = 294/393 (74%), Gaps = 1/393 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSLEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD    DA   +GF C+ K+RS++ P P  +  +  G YVD    E G+A GQAC  
Sbjct: 301 NWLGDETLADAASGEGFACYAKVRSTRAPAPAVLHVDSTGTYVDLTVGEAGIAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y++  ++ARV GGG I  S+R  + E SL +++
Sbjct: 361 YSAPGDDARVFGGGFIERSEREPSAEASLKALL 393


>gi|209550765|ref|YP_002282682.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226704775|sp|B5ZNK8|MNMA_RHILW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209536521|gb|ACI56456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 399

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/393 (58%), Positives = 294/393 (74%), Gaps = 1/393 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKQPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD  L + A  DGF C+ K+RS++ P P  +  +  G YVD    E G+A GQAC  
Sbjct: 301 NWLGDETLAQAATGDGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y++  + ARV GGG I  S+R  + E SL +++
Sbjct: 361 YSAPGDNARVFGGGFIERSEREPSAEASLKALL 393


>gi|325063117|gb|ADY66807.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Agrobacterium sp. H13-3]
          Length = 402

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/392 (59%), Positives = 295/392 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 5   VNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 64

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE RFR  VI PFA +YA GETP+PCV CN+TVKF+D
Sbjct: 65  AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 124

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         RR + RP+D +RDQS+FLFATTQ+Q+  L
Sbjct: 125 LLATAQELGADALATGHYIRSRPNPVAGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 184

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA +MGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL
Sbjct: 185 RFPLGGLSKAETRALAEDMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 244

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD    RVIVGPRE+LE  R+YLR++
Sbjct: 245 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 304

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    GF CF K+RS++ P    +  +++G+YVD    E GVA GQACV Y
Sbjct: 305 NWLGDGALADEAGQGFACFAKVRSTRPPTEAMLHADENGIYVDLMTGEAGVAPGQACVLY 364

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           ++   +ARV GGG I  S+RS   E SL +++
Sbjct: 365 SAPGADARVYGGGFIERSERSVDAEASLKALL 396


>gi|24638313|sp|Q8U9M5|MNMA_AGRT5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/392 (59%), Positives = 294/392 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE RFR  VI PFA +YA GETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         RR + RP+D +RDQS+FLFATTQ+Q+  L
Sbjct: 121 LLATAQELGADALATGHYIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL
Sbjct: 181 RFPLGGLSKAETRALAEEMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD    RVIVGPRE+LE  R+YLR++
Sbjct: 241 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG        GF CF K+RS++ P    +  +++G+YVD    E GVA GQACV Y
Sbjct: 301 NWLGDGALAADAGQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLY 360

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           ++   +ARV GGG I  S+RS   E SL +++
Sbjct: 361 SAPGPDARVYGGGFIDRSERSVDAEASLKALL 392


>gi|15966466|ref|NP_386819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti 1021]
 gi|24638324|sp|Q92MB5|MNMA_RHIME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15075737|emb|CAC47292.1| Putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Sinorhizobium meliloti 1021]
          Length = 398

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/380 (61%), Positives = 287/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         +R + RP D ERDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RVIVGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDSRSRRVIVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E A   GF+CF K+RS++ P P  ++ + +G+YV+  + E GVA GQAC  Y
Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGTGEDARVYGGGFIRRSER 380


>gi|307300497|ref|ZP_07580277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti BL225C]
 gi|307318362|ref|ZP_07597797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306896044|gb|EFN26795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306904663|gb|EFN35247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti BL225C]
          Length = 398

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/380 (61%), Positives = 287/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         +R + RP D ERDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RVIVGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E A   GF+CF K+RS++ P P  ++ + +G+YV+  + E GVA GQAC  Y
Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGTGEDARVYGGGFIRRSER 380


>gi|116253697|ref|YP_769535.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|205816894|sp|Q1MC84|MNMA_RHIL3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115258345|emb|CAK09447.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 408

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRS      +   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 127 FADLLATAKELGADALATGHYIRSGRNPSPENPGRRALFRPADADRDQSYFLFATTQEQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY DV+ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD  L E A   GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 307 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           C  Y++  + ARV GGG I  S+R  + E  L +++
Sbjct: 367 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALL 402


>gi|241206171|ref|YP_002977267.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860061|gb|ACS57728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 403

 Score =  498 bits (1282), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 2   APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 61

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 62  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 121

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRS      D   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 122 FADLLATAKELGADALATGHYIRSGRNPSPDNPGRRALFRPADADRDQSYFLFATTQEQI 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY DV+ ++    AL G+I
Sbjct: 182 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 241

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR+YL
Sbjct: 242 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 301

Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD  L E A   GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 302 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDAIGTYVDLTVGEAGIAPGQA 361

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           C  Y++  + ARV GGG I  S+R  + E  L +++
Sbjct: 362 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALL 397


>gi|227823283|ref|YP_002827255.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium fredii NGR234]
 gi|254811457|sp|C3MI00|MNMA_RHISN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|227342284|gb|ACP26502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium fredii NGR234]
          Length = 398

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/380 (61%), Positives = 287/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR       + +R + RP D ERDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYQGQRALYRPTDAERDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGNLSKPETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALGGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RVIVGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGTHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   + A   GF CF K+RS++ P P  ++ + DG+YV+    E GVA GQAC  Y
Sbjct: 301 NWLGDEEIDAAASRGFACFAKVRSTRQPAPAEMKCDADGIYVELVDGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGTGEDARVYGGGFIRKSER 380


>gi|150397798|ref|YP_001328265.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium medicae WSM419]
 gi|205828972|sp|A6UCQ0|MNMA_SINMW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150029313|gb|ABR61430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/380 (61%), Positives = 286/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         +R + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPMPRYPGQRALYRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RV+VGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVVVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E A   GF+CF K+RS++ P P  +  + +G+YV+  + E GVA GQAC  Y
Sbjct: 301 NWLGDEELEAAARSGFECFAKVRSTRRPAPAVLSCDAEGLYVELVEGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGIGEDARVYGGGFIRRSER 380


>gi|319408925|emb|CBI82582.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella schoenbuchensis R1]
          Length = 409

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/392 (60%), Positives = 292/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R GSCC
Sbjct: 3   LNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGVATHRVGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARR+ +T+N+ HYV DYEERFR AVI PF  SY  GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIEDARRIAETLNIPHYVLDYEERFREAVIDPFTESYTHGETPVPCVACNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR          R + RP+D ERDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSR-----SCGAHRALFRPLDAERDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +ADK DSQDICFV QGKY DV+ ++       G I+H+
Sbjct: 178 RFPLGDLPKARVREIAAEMGFVVADKHDSQDICFVPQGKYSDVITKLRPESTNPGIIMHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NGQILG H+GIINYT+GQRRG+G+A GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 NGQILGEHSGIINYTVGQRRGIGIATGEALYVVYLDAENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++   +G    VKIRS++ P P  +   +    VD  +SE GVA GQACVFY
Sbjct: 298 NWLGDEQLDNFPPNGIDVVVKIRSTRPPRPARLHYQNGVFSVDLLESESGVAPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +SNEARVLGGG I+ S+RS   E  L  V+
Sbjct: 358 NENSNEARVLGGGFITHSERSAGAEAMLKQVL 389


>gi|319781789|ref|YP_004141265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167677|gb|ADV11215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 396

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/388 (59%), Positives = 287/388 (73%), Gaps = 5/388 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCC
Sbjct: 1   MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRS    G +G +R +  RP+D +RDQSYFLFATTQ Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAQRALY-RPVDADRDQSYFLFATTQAQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR +A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLAVAAKQDSQDICFVPQGKYSDIIAKLKPTAANPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD + +RV+VGPRE+LE H+IYLR +
Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDADRARVVVGPREALETHKIYLRNM 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    G + F K+RS++ P P  +       +V+    E G+A GQACV Y
Sbjct: 296 NWLGDGPLTDVPAGGLELFAKVRSTRPPRPAVLHHRAGATWVELVDGESGIAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
           + D NEARV GGG I  S+R    E  L
Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAML 383


>gi|153008906|ref|YP_001370121.1| tRNA-specific 2-thiouridylase MnmA [Ochrobactrum anthropi ATCC
           49188]
 gi|166235072|sp|A6WZ88|MNMA_OCHA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151560794|gb|ABS14292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 398

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/394 (58%), Positives = 290/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD  ++RVIVGPRE+LE H+++LR+I
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDAPISDLPEGGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + +SN ARV GGG I  S+R    EE L  ++ +
Sbjct: 358 SDESNTARVFGGGFIGRSEREPQAEEMLRRLVAN 391


>gi|163758747|ref|ZP_02165834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hoeflea phototrophica DFL-43]
 gi|162284037|gb|EDQ34321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hoeflea phototrophica DFL-43]
          Length = 401

 Score =  488 bits (1256), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/392 (58%), Positives = 297/392 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD+DK+P+D RVVVAMSGGVDSSVVA LL R+GYDV+GVTLQLY+   A  R G+CC
Sbjct: 6   VNSLDIDKDPRDTRVVVAMSGGVDSSVVAGLLAREGYDVLGVTLQLYDHGAAVHRAGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+ + + HYV DYE+RF+ AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 66  AGQDIDDARRVCEVLGIPHYVLDYEKRFQEAVINPFAESYVAGETPIPCVACNQTVKFAD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R LGAD LATGHYIRSR     D   RR + RP+D ERDQSYFLFATTQ QL  +
Sbjct: 126 LLATARDLGADALATGHYIRSRANPSADNPGRRALYRPIDSERDQSYFLFATTQDQLDYV 185

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K   R+LA EMGL +A K+DSQDICFV  GKY +V++++    AL G+IVH+
Sbjct: 186 RFPLGELPKIRTRELAEEMGLTVAQKADSQDICFVPHGKYANVIEKLRPNSALAGEIVHI 245

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+GVA+G+PL+VV+LD  S RVIVGPRE+L+  R+ LR++
Sbjct: 246 DGRVLGEHPGIVHFTIGQRRGIGVAVGDPLYVVHLDARSKRVIVGPREALDTRRLILRDM 305

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   +D   +G  CF K+RS++ P P  ++  +  + V+  + E GVA GQACV Y
Sbjct: 306 NWLGDFALDDLGPEGLSCFAKVRSTRPPRPAVLRYENGEISVELVEGESGVAPGQACVLY 365

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           ++  +EARV GGG I  S+RS A E  L +++
Sbjct: 366 SAPGDEARVFGGGFIDRSERSAAAEAMLANLL 397


>gi|239832470|ref|ZP_04680799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824737|gb|EEQ96305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
          Length = 411

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/394 (58%), Positives = 290/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 16  LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 75

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 76  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 135

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 136 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 190

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 191 RFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVHI 250

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD  ++RVIVGPRE+LE H+++LR+I
Sbjct: 251 DGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRDI 310

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 311 NWLGDAPIGDLPEGGIEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 370

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + +SN ARV GGG I  S+R    EE L  ++ +
Sbjct: 371 SDESNTARVFGGGFIGRSEREPQAEEMLRRLVAN 404


>gi|306844591|ref|ZP_07477178.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO1]
 gi|306275035|gb|EFM56798.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO1]
          Length = 398

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/394 (58%), Positives = 290/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+DMRVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKPEDMRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR++
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|110634566|ref|YP_674774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium sp. BNC1]
 gi|123353475|sp|Q11G66|MNMA_MESSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110285550|gb|ABG63609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chelativorans sp. BNC1]
          Length = 391

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/390 (59%), Positives = 287/390 (73%), Gaps = 6/390 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P+  RVVVAMSGGVDSSVVA LL R+GY+V+GVTLQLY+   A  R GSCC
Sbjct: 1   MNSLDLPGRPEATRVVVAMSGGVDSSVVAGLLAREGYEVVGVTLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ ++HYV DYEERFR AVI PFA SY  GETP+PCV CN+TVKFSD
Sbjct: 61  AGQDIDDARRVAETLGIAHYVLDYEERFRKAVIDPFAESYVTGETPIPCVACNQTVKFSD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLETARELGADALATGHYIRSRA-----NGAHRALYRPVDADRDQSYFLFATTQEQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K  VR +A EMGL +A K DSQDICFV +GKY DV+ ++  G A  GDIVH+
Sbjct: 176 RFPLGGMSKPQVRAIAEEMGLSVAAKHDSQDICFVPRGKYSDVITKLKPGAASPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI++YTIGQRRG+G+A GEPL+VV+LD   +RV+VGPRE+LE  R+ LR++
Sbjct: 236 DGRVLGRHEGILHYTIGQRRGIGIAAGEPLYVVHLDAEHARVVVGPREALETRRLILRQV 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E+   +G   F K+RS++ P P  +   D   +V+  + E GVA GQACV Y
Sbjct: 296 NWLGDFPLEELPANGMDLFAKVRSTRPPTPATLHNRDGSTWVELHEGETGVAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           + D N+ARV GGG I  S+R  A  E+LLS
Sbjct: 356 SDDRNDARVFGGGFIERSERC-ADAEALLS 384


>gi|163843840|ref|YP_001628244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis ATCC 23445]
 gi|189036219|sp|B0CI68|MNMA_BRUSI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163674563|gb|ABY38674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis ATCC 23445]
          Length = 398

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/394 (58%), Positives = 289/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHSAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR++
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|254719618|ref|ZP_05181429.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. 83/13]
 gi|265984628|ref|ZP_06097363.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13]
 gi|306837544|ref|ZP_07470417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella sp. NF 2653]
 gi|264663220|gb|EEZ33481.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13]
 gi|306407370|gb|EFM63576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella sp. NF 2653]
          Length = 398

 Score =  484 bits (1247), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/394 (58%), Positives = 289/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQAARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR++
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F KIRS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDTPIADLPKSGMEVFAKIRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|23502454|ref|NP_698581.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis 1330]
 gi|62290471|ref|YP_222264.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700395|ref|YP_414969.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis biovar
           Abortus 2308]
 gi|148559837|ref|YP_001259458.1| tRNA-specific 2-thiouridylase MnmA [Brucella ovis ATCC 25840]
 gi|189024699|ref|YP_001935467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus S19]
 gi|225628026|ref|ZP_03786062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225853065|ref|YP_002733298.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis ATCC 23457]
 gi|237815980|ref|ZP_04594977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus str. 2308 A]
 gi|254689772|ref|ZP_05153026.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 6 str.
           870]
 gi|254694261|ref|ZP_05156089.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697916|ref|ZP_05159744.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702309|ref|ZP_05164137.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 5 str. 513]
 gi|254704837|ref|ZP_05166665.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 3 str. 686]
 gi|254708251|ref|ZP_05170079.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis
           M163/99/10]
 gi|254710623|ref|ZP_05172434.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis B2/94]
 gi|254714807|ref|ZP_05176618.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M644/93/1]
 gi|254717867|ref|ZP_05179678.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M13/05/1]
 gi|254730806|ref|ZP_05189384.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 4 str.
           292]
 gi|256032116|ref|ZP_05445730.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis
           M292/94/1]
 gi|256061638|ref|ZP_05451777.1| tRNA-specific 2-thiouridylase MnmA [Brucella neotomae 5K33]
 gi|256114160|ref|ZP_05454914.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160312|ref|ZP_05458006.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M490/95/1]
 gi|256255517|ref|ZP_05461053.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti B1/94]
 gi|256258024|ref|ZP_05463560.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 9 str.
           C68]
 gi|256263452|ref|ZP_05465984.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370004|ref|YP_003107515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella microti CCM 4915]
 gi|260169251|ref|ZP_05756062.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. F5/99]
 gi|260547004|ref|ZP_05822743.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038]
 gi|260755305|ref|ZP_05867653.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str.
           870]
 gi|260758526|ref|ZP_05870874.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str.
           292]
 gi|260762350|ref|ZP_05874693.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884320|ref|ZP_05895934.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str.
           C68]
 gi|261214569|ref|ZP_05928850.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|261219714|ref|ZP_05933995.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1]
 gi|261222726|ref|ZP_05937007.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94]
 gi|261315753|ref|ZP_05954950.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M163/99/10]
 gi|261318196|ref|ZP_05957393.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94]
 gi|261322603|ref|ZP_05961800.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1]
 gi|261325648|ref|ZP_05964845.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33]
 gi|261752876|ref|ZP_05996585.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513]
 gi|261755533|ref|ZP_05999242.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686]
 gi|261758765|ref|ZP_06002474.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99]
 gi|265989227|ref|ZP_06101784.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M292/94/1]
 gi|265995479|ref|ZP_06108036.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998689|ref|ZP_06111246.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1]
 gi|294852904|ref|ZP_06793577.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026]
 gi|297248856|ref|ZP_06932574.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196]
 gi|306843064|ref|ZP_07475687.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO2]
 gi|38258585|sp|Q8CY38|MNMA_BRUSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658011|sp|Q57BT1|MNMA_BRUAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123547133|sp|Q2YQB2|MNMA_BRUA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234846|sp|A5VRW1|MNMA_BRUO2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229486334|sp|B2S746|MNMA_BRUA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811446|sp|C0REM2|MNMA_BRUMB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|23348445|gb|AAN30496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis 1330]
 gi|62196603|gb|AAX74903.1| TrmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616496|emb|CAJ11563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis biovar Abortus 2308]
 gi|148371094|gb|ABQ61073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ovis ATCC 25840]
 gi|189020271|gb|ACD72993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus S19]
 gi|225617189|gb|EEH14235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225641430|gb|ACO01344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis ATCC 23457]
 gi|237789278|gb|EEP63489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus str. 2308 A]
 gi|256000167|gb|ACU48566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella microti CCM 4915]
 gi|260096054|gb|EEW79931.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038]
 gi|260668844|gb|EEX55784.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str.
           292]
 gi|260672782|gb|EEX59603.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675413|gb|EEX62234.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str.
           870]
 gi|260873848|gb|EEX80917.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str.
           C68]
 gi|260916176|gb|EEX83037.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921310|gb|EEX87963.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94]
 gi|260924803|gb|EEX91371.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1]
 gi|261295293|gb|EEX98789.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1]
 gi|261297419|gb|EEY00916.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94]
 gi|261301628|gb|EEY05125.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33]
 gi|261304779|gb|EEY08276.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M163/99/10]
 gi|261738749|gb|EEY26745.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99]
 gi|261742629|gb|EEY30555.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513]
 gi|261745286|gb|EEY33212.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686]
 gi|262553313|gb|EEZ09147.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1]
 gi|262766592|gb|EEZ12381.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093459|gb|EEZ17509.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661424|gb|EEZ31685.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M292/94/1]
 gi|294821493|gb|EFG38492.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026]
 gi|297176025|gb|EFH35372.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196]
 gi|306286743|gb|EFM58293.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO2]
 gi|326409608|gb|ADZ66673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis M28]
 gi|326539311|gb|ADZ87526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis M5-90]
          Length = 398

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/394 (58%), Positives = 289/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR++
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|260462497|ref|ZP_05810704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031693|gb|EEW32962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
          Length = 396

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/390 (59%), Positives = 288/390 (73%), Gaps = 6/390 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCC
Sbjct: 1   MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRS    G +G  R +  RP+D +RDQSYFLFATTQ Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAHRALY-RPVDADRDQSYFLFATTQAQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR +A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPSAANPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD   +RV+VGPRE+LE  +IYLR +
Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETRKIYLRNM 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    G + F K+RS++ P P  ++       V+    E G+A GQACV Y
Sbjct: 296 NWLGDGQLTDIPAGGIELFAKVRSTRPPRPAVLRHEAGVTSVELADGESGIAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           + D NEARV GGG I  S+R  A  E++LS
Sbjct: 356 SDDGNEARVFGGGFIERSERG-AEAEAMLS 384


>gi|24638328|sp|Q98HL0|MNMA_RHILO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 396

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/388 (59%), Positives = 285/388 (73%), Gaps = 5/388 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCC
Sbjct: 1   MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRS    G +G  R +  RP+D +RDQSYFLFATTQ Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAHRALY-RPVDADRDQSYFLFATTQAQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR +A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD   +RV+VGPRE+LE H+IYLR +
Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNM 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    G + F K+RS++ P P  ++       V+    E G+A GQACV Y
Sbjct: 296 NWLGDGPLGDIPEGGLELFAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
           + D NEARV GGG I  S+R    E  L
Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAML 383


>gi|161619531|ref|YP_001593418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella canis ATCC 23365]
 gi|260565920|ref|ZP_05836390.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40]
 gi|189036218|sp|A9M700|MNMA_BRUC2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161336342|gb|ABX62647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella canis ATCC 23365]
 gi|260155438|gb|EEW90518.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40]
          Length = 398

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/394 (57%), Positives = 288/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL    +D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKSEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR++
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|17986711|ref|NP_539345.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|256045209|ref|ZP_05448107.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565193|ref|ZP_05835677.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|265991642|ref|ZP_06104199.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|24638318|sp|Q8YIL6|MNMA_BRUME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17982334|gb|AAL51609.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260151261|gb|EEW86355.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|263002426|gb|EEZ15001.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 398

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/394 (57%), Positives = 288/394 (73%), Gaps = 5/394 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSCC
Sbjct: 3   LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH+
Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR++
Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV Y
Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           + DSN A V GGG I  S+R    EE L  ++ +
Sbjct: 358 SDDSNAACVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|319898474|ref|YP_004158567.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella clarridgeiae 73]
 gi|319402438|emb|CBI75979.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella clarridgeiae 73]
          Length = 409

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL  +P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGHPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPVPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+   +LGAD LATGHYIRSR++        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATAYELGADALATGHYIRSRVH-----GAHRALFRPLDADRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K+ VR++A EMGL +A+K DSQDICFV QG+Y DV+ ++   +A  G IVH+
Sbjct: 178 RFPLGDLSKDRVREIATEMGLVVANKHDSQDICFVPQGRYSDVITKLRPEVANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD  ++RVIVGPRE LE  R++LR++
Sbjct: 238 DGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENARVIVGPREMLETRRLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++  +DG    VK+RS++ P P  +        VD  +SE G+A GQACV Y
Sbjct: 298 NWLGDERLDNFPLDGIDVAVKVRSTRPPRPARLHYKQGLFSVDLLESESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S EAR+LGGG I+ S+ +   E+ L  V+
Sbjct: 358 NENSYEARILGGGFITRSEHAADTEKMLKQVL 389


>gi|121602707|ref|YP_989294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella bacilliformis KC583]
 gi|166234845|sp|A1UTJ1|MNMA_BARBK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120614884|gb|ABM45485.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella bacilliformis KC583]
          Length = 391

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/392 (59%), Positives = 290/392 (73%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P++ RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGPPENSRVVVAMSGGVDSSVVAGLLKREGYDVVGITLQLYDHGAATHRAGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + +YV DYE RFR AVI PFA SYA GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLRIPYYVLDYESRFREAVIDPFAESYARGETPIPCVACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGAD LATGHYIRS  Y        R + RP+D ERDQSYFLFATTQ+Q+  L
Sbjct: 123 LLVTARELGADALATGHYIRSVSY-----GTHRALFRPLDSERDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K  VR++A+EMGL +ADK DSQDICFV QGKY DV+ ++    +  GDIVH+
Sbjct: 178 RFPLGNLPKARVREIAKEMGLTVADKHDSQDICFVPQGKYSDVIAKLRPEASNPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NGQILG+H+GIINYT+GQRRG+GVA GE L+V++LD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 NGQILGQHSGIINYTVGQRRGIGVATGEALYVIFLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E+   D      KIRS++ P P  +   +    VD  + E  VA GQACVFY
Sbjct: 298 NWLGDERLENFPSDCIDVAAKIRSTRPPRPARLYYKEGIFSVDLLEGESSVAPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
               + ARVLGGG I+ S+RS   EE L  V+
Sbjct: 358 NESGDGARVLGGGFITHSERSTDAEERLQRVL 389


>gi|319406809|emb|CBI80442.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella sp. 1-1C]
          Length = 409

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL  +PK+ RVVVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGHPKNSRVVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+   +LGAD LATGHYIRSR++        R + R +D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLTTAYELGADALATGHYIRSRVH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++    A  G IVH+
Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD  ++ VIVGPRE LE  +++LR++
Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++  +DG +  VK+RS++ P    +       +VD  +SE GVA GQACV Y
Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S+EAR+LGGG I+ ++R+   E+ L  V+
Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKRVL 389


>gi|319403803|emb|CBI77387.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 409

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/392 (58%), Positives = 295/392 (75%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL  +PK+ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGHPKNSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+   +LGAD LATGHYIRSR +        R + R +D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLTTAYELGADALATGHYIRSRAH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++    A  G IVH+
Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD  ++ VIVGPRE LE  +++LR++
Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++  +DG +  VK+RS++ P    +       +VD  +SE GVA GQACV Y
Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S+EAR+LGGG I+ ++R+   E+ L  V+
Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKKVL 389


>gi|159185866|ref|NP_356917.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium tumefaciens str. C58]
 gi|25298384|pir||AC3012 hypothetical protein trmU [imported] - Agrobacterium tumefaciens
           (strain C58, Dupont)
 gi|159141000|gb|AAK89702.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium tumefaciens str. C58]
          Length = 380

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/374 (59%), Positives = 279/374 (74%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCCAGQD+ DARRVC+T+ + 
Sbjct: 1   MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV DYE RFR  VI PFA +YA GETP+PCV CN+TVKF+DLL+  ++LGAD LATGHY
Sbjct: 61  HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           IRSR         RR + RP+D +RDQS+FLFATTQ+Q+  LRFPLG + K   R LA E
Sbjct: 121 IRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALAEE 180

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           MGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL+G++LGRH+GI++YTIGQ
Sbjct: 181 MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRHDGIVHYTIGQ 240

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           RRG+GVA GEPL+VV+LD    RVIVGPRE+LE  R+YLR++NWLGDG        GF C
Sbjct: 241 RRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGALAADAGQGFTC 300

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           F K+RS++ P    +  +++G+YVD    E GVA GQACV Y++   +ARV GGG I  S
Sbjct: 301 FAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDARVYGGGFIDRS 360

Query: 387 KRSDAVEESLLSVI 400
           +RS   E SL +++
Sbjct: 361 ERSVDAEASLKALL 374


>gi|254470572|ref|ZP_05083976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudovibrio sp. JE062]
 gi|211960883|gb|EEA96079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudovibrio sp. JE062]
          Length = 400

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/396 (56%), Positives = 293/396 (73%), Gaps = 5/396 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L   P+D RVVVAMSGGVDSSVVA L+KR+GYDV+GVTLQLY+  +A +RKG+CC
Sbjct: 2   LNSLGLPGRPEDTRVVVAMSGGVDSSVVAGLMKREGYDVVGVTLQLYDHGEAIQRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARRV + + + HYV DYE RF+  VI  FA SY  GETP+PCV CN+TVKF D
Sbjct: 62  AGQDIHDARRVAEKLGIPHYVLDYESRFKEQVIERFADSYINGETPIPCVTCNQTVKFKD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + LGADVL TGHY+R+    G +G +   M RP+DL+RDQSYFLFATTQ+QL  L
Sbjct: 122 LLETAKDLGADVLVTGHYVRT----GMEGNQL-AMFRPVDLDRDQSYFLFATTQEQLDFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K  VR+LARE  L IADK DSQDICFV QG+Y DV+ ++    A  GDIVH+
Sbjct: 177 RFPLGGMTKPEVRELAREFDLAIADKHDSQDICFVPQGRYTDVIAKLRPHAAEPGDIVHV 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+HNGII+YTIGQRRG+GVA G+PL+VV+LD +  RVIVGP+E+L  H + LRE+
Sbjct: 237 DGRVLGKHNGIIHYTIGQRRGIGVATGDPLYVVHLDADGRRVIVGPKEALATHNLLLREV 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+G G  +D   +G   + K+RS++ P    +++N + + V+    E+GVA GQACVF+
Sbjct: 297 NWIGPGALDDLPEEGITVYAKVRSTRPPTEAVLRKNGENIQVELVAGEMGVAPGQACVFF 356

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
             +  EARVLGGG I  +++ +  E +L +++G  +
Sbjct: 357 DKEGQEARVLGGGWIQRAEKQEGAEAALKALLGKSW 392


>gi|319405239|emb|CBI78844.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella sp. AR 15-3]
          Length = 409

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/393 (58%), Positives = 293/393 (74%), Gaps = 5/393 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           RLNSLDL   P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+C
Sbjct: 2   RLNSLDLPGYPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGAC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVACNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+   +LGAD LATGHYIRSRL+        R + R +D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLTTAYELGADALATGHYIRSRLH-----GAHRALFRSLDADRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY DV+ ++    A  G IVH
Sbjct: 177 LRFPLGDLSKEHVREIAAEMGLVVANKHDSQDICFVPQGKYSDVITKLRPEAANPGVIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD  ++ VIVGPRE LE  +++LR+
Sbjct: 237 IDGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENACVIVGPREMLETRKLFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD   ++  +DG    VK+RS+  P    +       +VD  +SE GVA GQACV 
Sbjct: 297 VNWLGDEQLDNFPLDGIDVAVKVRSTCPPRSARLHYKQGLFFVDLLESESGVAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y   S+EARVLGGG I+ ++R+   E+ L  V+
Sbjct: 357 YNDSSHEARVLGGGFITCAERAADTEKMLKRVL 389


>gi|49474501|ref|YP_032543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella quintana str. Toulouse]
 gi|81646912|sp|Q6FZ46|MNMA_BARQU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49240005|emb|CAF26420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella quintana str. Toulouse]
          Length = 408

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/393 (58%), Positives = 295/393 (75%), Gaps = 7/393 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P + R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPDNSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCVACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR +        R + RP D+ERDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSRPH-----GAHRALFRPFDVERDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +ADK DSQDICFV QGKY DV+ ++       G IVH+
Sbjct: 178 RFPLGDLPKAHVREIATEMGFVVADKHDSQDICFVPQGKYSDVITKLRPEAVNPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQ+LG+H+GI+NYT+GQRRG+GVA GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGQVLGKHSGIVNYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVF 367
           NWLGD   ++   DG +  VK+RS++ P  +      +GV+ VDF + E  VA GQACVF
Sbjct: 298 NWLGDERLDNFPSDGLEMAVKVRSTR-PSHLARLHYQEGVFSVDFLECENSVAPGQACVF 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  + + AR+LGGG ++ S+R+  VE  L  V+
Sbjct: 357 YDGNGDGARILGGGFVTHSQRAVGVEMMLRRVL 389


>gi|163868748|ref|YP_001609965.1| tRNA-specific 2-thiouridylase MnmA [Bartonella tribocorum CIP
           105476]
 gi|205812594|sp|A9IWH0|MNMA_BART1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161018412|emb|CAK01970.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella tribocorum CIP 105476]
          Length = 407

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/392 (57%), Positives = 293/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D R+VVAMSGGVDSSVVA LLKR+GY+VIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKREGYNVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV + + + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAEMLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR +        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMGL +A+K DSQDICFV QGKY DV+ ++    A  G IVH+
Sbjct: 178 RFPLGDLPKARVREIAAEMGLVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGFIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++    G +  VK+RS++ P    +   +    VD  + E GVA GQACV Y
Sbjct: 298 NWLGDESLDNFPSQGIEVAVKVRSTRPPHLACLHYKEGVFSVDLLECENGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             + +EAR+LGGG ++ S+R+  +E  L  V+
Sbjct: 358 DGNGHEARILGGGFVTHSERAADIEVMLKRVL 389


>gi|240850925|ref|YP_002972325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella grahamii as4aup]
 gi|240268048|gb|ACS51636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella grahamii as4aup]
          Length = 409

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/392 (57%), Positives = 291/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D R+VVAMSGGVDSSVVA LLK++GY+VIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKKEGYNVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR +        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +A+K DSQDICFV QGKY DV+ ++    A  G IVH+
Sbjct: 178 RFPLGDLPKARVREMAAEMGFVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   +     G +  VK+RS++ P    +   +    VD  + E GVA GQACV Y
Sbjct: 298 NWLGDESLDKFPSQGIEVAVKVRSTRPPHLARLHYKEGIFSVDLLECENGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             + +EAR+LGGG ++ S+R+   E  L  V+
Sbjct: 358 DGNGHEARILGGGFVTHSERAADTEMMLKRVL 389


>gi|49475921|ref|YP_033962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella henselae str. Houston-1]
 gi|81647713|sp|Q6G2J9|MNMA_BARHE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49238729|emb|CAF27985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella henselae str. Houston-1]
          Length = 409

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/392 (57%), Positives = 292/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P++ R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DAR V +T+ + HYV DYEERFR AVI PFA+SYA GETP+PC+ CN+TVKF+D
Sbjct: 63  AGQDIEDARCVAETLGIPHYVLDYEERFREAVIDPFAASYAHGETPVPCIACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+L AD LATGHYIRSR +        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELDADALATGHYIRSRSH-----GAHRALFRPLDSDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +A+K DSQDICFV QGKY D++ ++       G IVH+
Sbjct: 178 RFPLGDLPKARVREMATEMGFVVANKHDSQDICFVPQGKYSDIITKLRPEAVNPGVIVHV 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQ+LG+H+GI++YT+GQRRG+GVA GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGQVLGKHSGIVHYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++   DG +  VK+RS++ P    +   +    VDF + E  VA GQACVFY
Sbjct: 298 NWLGDERLDNFPPDGIEMAVKVRSTRPPHLARLHYQEGVFSVDFLECENSVAPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S+ ARVLGGG ++ S+R+   E  L  V+
Sbjct: 358 DGNSDGARVLGGGFVTHSERAAETEMMLKRVL 389


>gi|13472503|ref|NP_104070.1| tRNA-specific 2-thiouridylase MnmA [Mesorhizobium loti MAFF303099]
 gi|14023249|dbj|BAB49856.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Mesorhizobium loti MAFF303099]
          Length = 378

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/370 (59%), Positives = 271/370 (73%), Gaps = 5/370 (1%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCCAGQD+ DARRV +T+ + 
Sbjct: 1   MSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCCAGQDIDDARRVSETLGIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+DLL+  ++LGAD LATGHY
Sbjct: 61  HYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           IRS    G +G  R +  RP+D +RDQSYFLFATTQ Q+  LRFPLG + K  VR +A E
Sbjct: 121 IRS----GANGAHRALY-RPVDADRDQSYFLFATTQAQIDYLRFPLGGLSKPQVRAIAEE 175

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           MGL +A K DSQDICFV QGKY D++ ++    A  GDIVH++G++LGRH GI+ YTIGQ
Sbjct: 176 MGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHIDGRVLGRHEGILRYTIGQ 235

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           RRG+G+A GEPL+VV+LD   +RV+VGPRE+LE H+IYLR +NWLGDG   D    G + 
Sbjct: 236 RRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNMNWLGDGPLGDIPEGGLEL 295

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           F K+RS++ P P  ++       V+    E G+A GQACV Y+ D NEARV GGG I  S
Sbjct: 296 FAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLYSDDGNEARVFGGGFIERS 355

Query: 387 KRSDAVEESL 396
           +R    E  L
Sbjct: 356 ERGAEAEAML 365


>gi|328542757|ref|YP_004302866.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Polymorphum gilvum SL003B-26A1]
 gi|326412503|gb|ADZ69566.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Polymorphum gilvum SL003B-26A1]
          Length = 393

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/377 (59%), Positives = 278/377 (73%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL + P+D RVVVAMSGGVDSSVVA L+K++GYDV+GVTLQLY+   A +R G+CC
Sbjct: 2   LNSLDLPRRPQDTRVVVAMSGGVDSSVVAGLMKQEGYDVVGVTLQLYDHGAAVQRAGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARRV + + + HYV DYE RF+ AVI  FA SY AGETP+PCV CN+TVKFSD
Sbjct: 62  AGQDIHDARRVAERLGIPHYVLDYERRFKEAVIDRFAESYMAGETPIPCVACNQTVKFSD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGADVLATGHY+RS          RR + RP DL+RDQSYFLFATTQ+QL  L
Sbjct: 122 LLETARTLGADVLATGHYVRS-----APAGNRRALYRPADLDRDQSYFLFATTQEQLDFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG   K  VR LAR  GL +ADK DSQDICFV +G+Y DV+ R+    A  GDIVH+
Sbjct: 177 RFPLGGRPKAEVRALARRFGLAVADKQDSQDICFVPKGRYADVIARLRPDAAEPGDIVHV 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH+GII+YT+GQRRGLG+A GEPL+VV LD  + RV+VGPR++L   R+ LR++
Sbjct: 237 DGRVLGRHDGIIHYTVGQRRGLGIAAGEPLYVVRLDAAARRVVVGPRDALATRRLSLRDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           NWLG    +         F K+RS++ PVP  + R+ DG + V+    E GVA GQACVF
Sbjct: 297 NWLGAEPLDPGAP--VALFAKVRSTRPPVPAVLTRHADGAIEVELADGETGVAPGQACVF 354

Query: 368 YTSDSNEARVLGGGIIS 384
           Y +D  EARVLGGG I+
Sbjct: 355 YDADGAEARVLGGGWIA 371


>gi|148253403|ref|YP_001237988.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. BTAi1]
 gi|205811320|sp|A5ED38|MNMA_BRASB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146405576|gb|ABQ34082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bradyrhizobium sp. BTAi1]
          Length = 397

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/378 (58%), Positives = 282/378 (74%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + + HYV DYE+RFR +VI  FA+SYA+GETP+PC++CNR +KF D
Sbjct: 62  AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGA VLATGHY+ SR     DG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLKTARELGASVLATGHYVASRRLA--DGSRA-LVC-AADADRDQSYFLFATTREQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K  VR+LAR  GL++ADK DSQDICFV  G+Y D++ ++       G+IV L
Sbjct: 178 RFPLGDMTKPEVRELARRFGLEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG++LG H GI NYTIGQR+GLG+A G PL+VV LD  + RV+VGPRE+L  HRI LRE+
Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVATRRVVVGPREALRTHRITLREV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG+ + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGVLDAAVRDGLELFVRVRSTRPPQPAWLRGADGQYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            + S  ARVLGGG I  +
Sbjct: 358 DAASGRARVLGGGFIQSA 375


>gi|146342725|ref|YP_001207773.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. ORS278]
 gi|205811327|sp|A4Z082|MNMA_BRASO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146195531|emb|CAL79558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bradyrhizobium sp. ORS278]
          Length = 397

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/378 (58%), Positives = 278/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + + HYV DYE+RFR +VI  FA+SYA+GETP+PC++CNR +KF D
Sbjct: 62  AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGA VLATGHY+ SR     DG R  + C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLKTARELGASVLATGHYVASRRL--PDGSRA-LTC-AADADRDQSYFLFATTREQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K  VR+LAR   L++ADK DSQDICFV  G+Y D++ ++       G+IV L
Sbjct: 178 RFPLGDMTKPEVRELARRFELEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG++LG H GI NYTIGQR+GLG+A G PL+VV LD  + RV+VGPRE+L  HRI LRE+
Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVTTRRVVVGPREALRTHRITLREV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDAAVRDGLELFVRVRSTRAPQPAWLRGADGSYEVELVGGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            + S  ARVLGGG I  +
Sbjct: 358 DAASGRARVLGGGFIQSA 375


>gi|85713551|ref|ZP_01044541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter sp. Nb-311A]
 gi|85699455|gb|EAQ37322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter sp. Nb-311A]
          Length = 433

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/376 (57%), Positives = 277/376 (73%), Gaps = 4/376 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 35  LNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 94

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + V HYV DYE RFR  VI  FA SYA+GETP+PC++CNR VKF D
Sbjct: 95  AGQDIHDARNVAERLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRLVKFRD 154

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR      G  R ++C   D +RDQSYFLFATT++QL  L
Sbjct: 155 LLATARELGAAALATGHYVASRR---SPGGSRTLLC-AADADRDQSYFLFATTREQLDFL 210

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G Y D++ ++     L GDIV L
Sbjct: 211 RFPLGDMTKAQTRELARRFGLPVADKHDSQDICFVPTGHYTDIISQLKPNAMLSGDIVDL 270

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+++G H GI+N+T+GQRRGLG+A G PL+V+ LD  + RV+VGPRE+L++HRI LR++
Sbjct: 271 DGRVIGHHEGIVNFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIVLRDV 330

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + A+  G + FV++RS++ P P +++  D G  V+    E GV+ GQACVFY
Sbjct: 331 NWIGDGALDLAIGAGLELFVRVRSTRKPQPAWLRVVDGGYEVELVAGEEGVSPGQACVFY 390

Query: 369 TSDSNEARVLGGGIIS 384
                +ARVLGGG I+
Sbjct: 391 DGPEGQARVLGGGFIA 406


>gi|218663598|ref|ZP_03519528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli IE4771]
          Length = 345

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/345 (60%), Positives = 262/345 (75%), Gaps = 1/345 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352
           NWLGD    DA    GF C+ K+RS++ P P  +  +    YVD 
Sbjct: 301 NWLGDETLADAASGGGFACYAKVRSTRAPAPAVLHVDATCTYVDL 345


>gi|304394517|ref|ZP_07376438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ahrensia sp. R2A130]
 gi|303293427|gb|EFL87806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ahrensia sp. R2A130]
          Length = 406

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL  DK P D RVVVAMSGGVDSSVVA LLK  GY+V+G+TLQLY+   A ++KG+CC
Sbjct: 3   LNSLGFDKAPADTRVVVAMSGGVDSSVVACLLKEQGYEVLGMTLQLYDHGAAVQKKGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARRV + +   HYV DYE++FR  VI PFA +Y  GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIHDARRVSEQMGFPHYVLDYEQKFREQVIDPFAKAYINGETPIPCVACNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGK-RRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           LL+  R+LGAD LATGHYI S+   GDDG  + R + RP D ++DQSYFLFATTQ+QL  
Sbjct: 123 LLTTARELGADCLATGHYIISK--PGDDGPLKNRQLFRPADADKDQSYFLFATTQEQLDF 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLGD+ K   R++A+EM L +A+KSDSQDICFV QGKY D++ +I     + GDIVH
Sbjct: 181 LRFPLGDVPKSRTREMAQEMDLIVAEKSDSQDICFVPQGKYADIIAKIRPDAGVAGDIVH 240

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           L+G++LGRH+GI N+TIGQRRG+G+A G+P++V+ +D  ++ V VGPRE+L   RI LR+
Sbjct: 241 LDGRVLGRHDGIFNFTIGQRRGIGIATGDPVYVISIDAKTATVTVGPREALATRRIALRD 300

Query: 308 INWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +NWLGD   EDAV  +G    V++RS++ P P  +   D   ++     E G++ GQACV
Sbjct: 301 VNWLGDETLEDAVSEEGIDLHVRVRSTRPPRPARLTLEDGTAFITLTDGEDGISPGQACV 360

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  ++ + RVLGGG I+
Sbjct: 361 FYVDENPQTRVLGGGWIA 378


>gi|205822155|sp|Q131Q8|MNMA_RHOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/401 (55%), Positives = 284/401 (70%), Gaps = 12/401 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGSRA-LIC-AADRDRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV L
Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG +LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR++
Sbjct: 238 NGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401
            +   +ARVLGGG I  +         R DA   +L ++ G
Sbjct: 358 DAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 398


>gi|91978423|ref|YP_571082.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisB5]
 gi|91684879|gb|ABE41181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisB5]
          Length = 402

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/401 (55%), Positives = 284/401 (70%), Gaps = 12/401 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 6   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 66  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 126 LLATARELGASALATGHYVSSRRL--DDGSRA-LIC-AADRDRDQSYFLFATTREQLDFL 181

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV L
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 241

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG +LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR++
Sbjct: 242 NGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIVLRDV 301

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACVFY
Sbjct: 302 NWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQACVFY 361

Query: 369 TSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401
            +   +ARVLGGG I  +         R DA   +L ++ G
Sbjct: 362 DAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 402


>gi|75674801|ref|YP_317222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|123614062|sp|Q3SV21|MNMA_NITWN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|74419671|gb|ABA03870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/390 (55%), Positives = 282/390 (72%), Gaps = 4/390 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V   + V HYV DYE RFR  VI  FA SYA+GETP+PC++CNR VKF D
Sbjct: 62  AGQDIHDARNVAARLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRQVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR     DG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGAAALATGHYVSSRRLA--DGSRA-LLC-AADTDRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K+  R+LAR  GL +ADK DSQDICFV  G+Y D++ R+     + GDIV L
Sbjct: 178 RFPLGDMTKQQTRELARRFGLSVADKHDSQDICFVPTGRYTDIISRLKPNAMVSGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G ++G H GI+++T+GQRRGLG+A G PL+V+ LD  + RV+VGPRE+L++HRI LR++
Sbjct: 238 DGHVIGHHEGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + A+  G + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDRAIGAGLELFVRVRSTRRPQPAWLRVVDGRYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
                ++RVLGGG I+ +    A E +  S
Sbjct: 358 DGAEGQSRVLGGGFIARAMAQRANEAAAQS 387


>gi|27382106|ref|NP_773635.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium japonicum USDA
           110]
 gi|81735060|sp|Q89ES7|MNMA_BRAJA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27355276|dbj|BAC52260.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bradyrhizobium japonicum USDA 110]
          Length = 393

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/378 (56%), Positives = 277/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V   + + HYV DYE+RFR +VI  FA SYA GETP+PC++CNR++KF D
Sbjct: 62  AGQDIHDARDVAAKLGIPHYVLDYEDRFRESVIDNFADSYALGETPVPCIECNRSIKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGA  LATGHY+ SR    DDG R  ++    D +RDQSYFLFATTQ+QL  L
Sbjct: 122 LLKTARELGAQALATGHYVASRRL--DDGSR--VLVCAADADRDQSYFLFATTQEQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y D++ R+       GDIV L
Sbjct: 178 RFPLGDMTKPETRELARRFGLAVADKHDSQDICFVPTGRYTDIITRLRPNAMDPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRHNGI N+T+GQRRGLG+A   PLFVV L+  + RV+VGPRE+L++HRI LR++
Sbjct: 238 DGRVLGRHNGIANFTVGQRRGLGIAAHAPLFVVRLEAANRRVVVGPREALKMHRISLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLG G  + A+ +G + FV++RS++ P P +++       ++    E GV+ GQACVFY
Sbjct: 298 NWLGGGDIDSAIGNGLEMFVRVRSTRSPQPAWLRGAGGHYEIELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            + S +ARVLGGG I  +
Sbjct: 358 DAPSGQARVLGGGFIQSA 375


>gi|217978097|ref|YP_002362244.1| tRNA-specific 2-thiouridylase MnmA [Methylocella silvestris BL2]
 gi|217503473|gb|ACK50882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocella silvestris BL2]
          Length = 415

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/384 (57%), Positives = 275/384 (71%), Gaps = 7/384 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L K P   RVVVAMSGGVDSSVVAAL+K  GYDVI VT+QLY+  +A  RKG+CC
Sbjct: 18  LNSLGLPKPPAQTRVVVAMSGGVDSSVVAALMKEQGYDVIAVTMQLYDHGEAIHRKGACC 77

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DAR V   +++ HYV DYEERFR  VI PF+ SYA GETP+PCV CN  +KF+D
Sbjct: 78  AGQDIQDARLVAARLDIPHYVLDYEERFREKVINPFSHSYATGETPIPCVSCNSEIKFAD 137

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L      LGADVLATGHY+ +R     D    R++ R  D  RDQSYFLFATT++QL  L
Sbjct: 138 LFDTALDLGADVLATGHYVSTR----SDEAGERVLHRAFDGARDQSYFLFATTRRQLQML 193

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K  VR LAR  GL +ADK+DSQDICFV +GKY D+++R++ G A+ G+IVH+
Sbjct: 194 RFPLGDMTKTDVRALARRFGLIVADKADSQDICFVPKGKYSDLIERLSPGAAVPGEIVHI 253

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           +G++LGRH G+I+YTIGQRRGLG+     GEPLFV+ LD   +RV+VGPRE+L   R +L
Sbjct: 254 DGRVLGRHAGVIHYTIGQRRGLGLGDANAGEPLFVIKLDAAGARVVVGPREALATRRAHL 313

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           R +NW+GDG   D   +G   FV++RS++ PV   +   D G +V+F   E  V+ GQAC
Sbjct: 314 RAVNWIGDGELGDLPREGADIFVQVRSTRPPVAGRLYARDGGAHVEFVHDEDSVSPGQAC 373

Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389
           VFY SD   ARVLGGG IS ++ +
Sbjct: 374 VFYASDQPRARVLGGGFISSTESA 397


>gi|307944132|ref|ZP_07659473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseibium sp. TrichSKD4]
 gi|307772478|gb|EFO31698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseibium sp. TrichSKD4]
          Length = 390

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/383 (57%), Positives = 278/383 (72%), Gaps = 9/383 (2%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           NSLDL   P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+   A  R  SCCA
Sbjct: 3   NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKEEGYDVIGVTLQLYDHGAAVSRAKSCCA 62

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D++DARR  + I + HYV DYE RF+  V+  FA SY AGETP+PCV CN+TVKF+DL
Sbjct: 63  GVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   + LGADVLATGHY+RSR     DG +R +  RP+DL+RDQSYFLFATTQ+QL  +R
Sbjct: 123 LKTAKDLGADVLATGHYVRSR----PDGNKRALF-RPVDLDRDQSYFLFATTQEQLDFIR 177

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG   K  VR LA + GL +A+K DSQDICFV  G Y +V++++    A  GDIVH++
Sbjct: 178 FPLGGRPKSEVRQLAEKFGLSVANKPDSQDICFVPNGDYTEVIRKLRPNAAEPGDIVHMD 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG+H G+I+YT+GQRRGLGVA GEPL+VV LD +  RV+VGPRE+L  + I LRE+N
Sbjct: 238 GRVLGQHEGVIHYTVGQRRGLGVATGEPLYVVRLDADEKRVVVGPREALTTNTIILREVN 297

Query: 310 WLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           WLGD  L E A +D    F K+RS++ P P  ++   +   V+    E GVA GQACVF+
Sbjct: 298 WLGDMPLDEGAELD---LFAKVRSTRPPAPAILRHTAEKTTVELVTGEAGVAPGQACVFF 354

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
            S+   ARVLGGG I+ ++RS A
Sbjct: 355 DSEDETARVLGGGWIARTERSGA 377


>gi|86751223|ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           HaA2]
 gi|86574251|gb|ABD08808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris HaA2]
          Length = 402

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/386 (57%), Positives = 280/386 (72%), Gaps = 5/386 (1%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSLDL   P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+
Sbjct: 4   TMLNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGA 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF
Sbjct: 64  CCAGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKF 123

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL+  R+LGA  LATGHY+ SR     DG R  ++C   D +RDQSYFLFATT++QL 
Sbjct: 124 RDLLATARELGASALATGHYVSSRRLA--DGSRA-LIC-AADRDRDQSYFLFATTREQLD 179

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLGDM K   RDLAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV
Sbjct: 180 FLRFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIV 239

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            LNG++LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR
Sbjct: 240 DLNGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLR 299

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACV
Sbjct: 300 DVNWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACV 359

Query: 367 FYTSDSNEARVLGGGII-SGSKRSDA 391
           FY +   +ARVLGGG I S + RS A
Sbjct: 360 FYDAAEGQARVLGGGFIKSAAPRSIA 385


>gi|90422506|ref|YP_530876.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisB18]
 gi|90104520|gb|ABD86557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisB18]
          Length = 404

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/391 (55%), Positives = 284/391 (72%), Gaps = 4/391 (1%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LNSLDL+  P+D R+VVAMSGGVDSS  AALLK +GYDV+G+TLQLY+   A  RKG
Sbjct: 3   AAMLNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRKG 62

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +CCAGQD++DAR V D I + HYV DYE RF+ +VI  FA+SYA GETP+PC++CNR++K
Sbjct: 63  ACCAGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIK 122

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F DLLS  R+LGA  LATGHY+ SR     DG R  ++C   D +RDQSYFLFATT+ QL
Sbjct: 123 FRDLLSTARELGASALATGHYVSSRRLA--DGSRA-LVC-ASDADRDQSYFLFATTRDQL 178

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV R+       G+I
Sbjct: 179 DYLRFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGEI 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V L+G++LG+H GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPRE+L + RI L
Sbjct: 239 VDLDGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIVL 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           R++NW+GD   + AV DG + FV++RS++ P P +++  D G  V+    E GV+ GQAC
Sbjct: 299 RDVNWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQAC 358

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY + + +ARVLGGG I  +    A + +L
Sbjct: 359 VFYDAPAGQARVLGGGFIKSATPRAAGKSAL 389


>gi|182679942|ref|YP_001834088.1| tRNA-specific 2-thiouridylase MnmA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|205813049|sp|B2IBH3|MNMA_BEII9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|182635825|gb|ACB96599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 431

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/391 (56%), Positives = 285/391 (72%), Gaps = 9/391 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L K P   RVVVAMSGGVDSSVVAALLKR+GY+VIGVTLQLY+  +A  RKG+CC
Sbjct: 18  LNSLGLPKPPALTRVVVAMSGGVDSSVVAALLKREGYEVIGVTLQLYDHGEAVHRKGACC 77

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DAR+V D + + HYV DYEERFR  VI PFA SYA GETP+PCV CN  +KF+D
Sbjct: 78  AGQDIQDARQVADQLGIPHYVLDYEERFRRKVIDPFAQSYATGETPIPCVSCNSEIKFAD 137

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L    + LGADVLATGHY+ S+     DG   R + R +D  RDQSYFLFATT  QL  L
Sbjct: 138 LFETAQHLGADVLATGHYVSSKAEA--DGG--RALYRSLDSSRDQSYFLFATTNAQLELL 193

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR +AR++GL +ADK+DSQDICFV  GKY DV++R++ G  + G+I+H+
Sbjct: 194 RFPLGDLAKPDVRQMARQLGLVVADKADSQDICFVPSGKYSDVIERLSPGAVVPGEILHV 253

Query: 249 NGQILGRHNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +G++LGRH+G+I+YTIGQRR      +G   GEPL+V+ LD   ++VIVGPR++L   R+
Sbjct: 254 DGRVLGRHSGVIHYTIGQRRGLGLGAVGAGAGEPLYVIRLDAAKAQVIVGPRQALATRRV 313

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           +LR +NW+G G  +D    G + FV++RS++ P+P F+  ++  ++VDF   E GV+ GQ
Sbjct: 314 HLRGVNWIGPGSLQDMDEHGLEIFVQVRSTRAPIPGFLHAHESEIWVDFALDEDGVSPGQ 373

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
           ACVFY +D   ARVLGGG IS ++ +  + E
Sbjct: 374 ACVFYENDQPRARVLGGGFISATESALQMRE 404


>gi|205822083|sp|Q2ISK2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/384 (57%), Positives = 279/384 (72%), Gaps = 5/384 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR     DG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGASALATGHYVSSRRLA--DGSRA-LIC-AADRDRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   RDLAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV L
Sbjct: 178 RFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG++LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR++
Sbjct: 238 NGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGII-SGSKRSDA 391
            +   +ARVLGGG I S + RS A
Sbjct: 358 DAAEGQARVLGGGFIKSAAPRSIA 381


>gi|205822138|sp|Q21AM9|MNMA_RHOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 400

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/388 (55%), Positives = 283/388 (72%), Gaps = 4/388 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D R+VVAMSGGVDSS  AALLK +GYDV+G+TLQLY+   A  RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V D I + HYV DYE RF+ +VI  FA+SYA GETP+PC++CNR++KF D
Sbjct: 62  AGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLS  R+LGA  LATGHY+ SR     DG R  ++C   D +RDQSYFLFATT+ QL  L
Sbjct: 122 LLSTARELGASALATGHYVSSRRLA--DGSRA-LVC-ASDADRDQSYFLFATTRDQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV R+       G+IV L
Sbjct: 178 RFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPRE+L + RI LR++
Sbjct: 238 DGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GD   + AV DG + FV++RS++ P P +++  D G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
            + + +ARVLGGG I  +    A + +L
Sbjct: 358 DAPAGQARVLGGGFIKSATPRAAGKSAL 385


>gi|90419040|ref|ZP_01226951.1| tRNA methyl transferase
           ((5-methylaminomethyl-2-thiouridylate)-
           methyltransferase) [Aurantimonas manganoxydans SI85-9A1]
 gi|90337120|gb|EAS50825.1| tRNA methyl transferase
           ((5-methylaminomethyl-2-thiouridylate)-
           methyltransferase) [Aurantimonas manganoxydans SI85-9A1]
          Length = 425

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/394 (55%), Positives = 280/394 (71%), Gaps = 5/394 (1%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            + E    NSLDL K P D RVVVAMSGGVDSSVVAA+LK  GYDV+G+TLQLY++ + +
Sbjct: 30  TLPEWPMSNSLDLPKPPADTRVVVAMSGGVDSSVVAAILKEQGYDVVGITLQLYDAGEGA 89

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           +R GSCCAGQD++DARRV +T+ + HYV DYE+RFR AVI PFA+SY AGETP+PCV CN
Sbjct: 90  RRAGSCCAGQDIHDARRVAETLGIHHYVLDYEDRFRKAVINPFAASYLAGETPIPCVACN 149

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +TVKF DLL+  + LGAD LATGHYI SR     +G  R +  RP DL+RDQSYFL+ TT
Sbjct: 150 QTVKFRDLLATAQDLGADALATGHYIESR----QNGAHRSLY-RPADLDRDQSYFLYGTT 204

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG + K   R+LA   GL +A K DSQDICFV +G+Y DV++++    + 
Sbjct: 205 QEQLDFLRFPLGGLTKPQTRELAERHGLVVAAKPDSQDICFVAKGRYSDVIRKLRPEASE 264

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
            GDIVHL+G+ LGRH GI++YTIGQRRGLG+A  +PL+VV LD  +++V+VGPRE+L   
Sbjct: 265 PGDIVHLDGRHLGRHAGIVHYTIGQRRGLGIAAADPLYVVALDPATAQVVVGPREALATR 324

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
           R+ LR++NWLG     D      + FV++RS++ P P  +Q  +    V+    E GVA 
Sbjct: 325 RLTLRDVNWLGRTDPADMAAADEEIFVRVRSTRPPAPARIQVENGVWTVELASGEDGVAP 384

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
           GQACVFY  +   A VLGGG+IS + R    + +
Sbjct: 385 GQACVFYRGEGVGAEVLGGGVISVTDRPQRAQRA 418


>gi|92116313|ref|YP_576042.1| tRNA-specific 2-thiouridylase MnmA [Nitrobacter hamburgensis X14]
 gi|122418585|sp|Q1QQB5|MNMA_NITHX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91799207|gb|ABE61582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter hamburgensis X14]
          Length = 400

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/376 (55%), Positives = 276/376 (73%), Gaps = 4/376 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL+L+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLELEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + + HYV DYE RFR  VI  FA SYA+GETP+PC++CNR VKF D
Sbjct: 62  AGQDIHDARNVAERLGIPHYVLDYENRFRETVIENFADSYASGETPVPCIECNRLVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ S    G     R ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGAAALATGHYVASHRMAGGS---RALLC-AADADRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y D++ ++     + GDIV L
Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPTGRYTDIISQLKPNAMVSGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G ++G H+GI+++T+GQRRGLG+A G PL+V+ LD  + RV+VGPRE+L++HRI LR++
Sbjct: 238 DGHVIGHHDGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIILRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV  G + FV++RS++ P P +++  D    ++    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDRAVGAGLELFVRVRSTRKPQPAWLRAIDGRYEIELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIIS 384
                +ARVLGGG I+
Sbjct: 358 DGLEGQARVLGGGFIA 373


>gi|192289904|ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           TIE-1]
 gi|192283653|gb|ACF00034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris TIE-1]
          Length = 401

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 6   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+VKF D
Sbjct: 66  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 126 LLATARELGASALATGHYVSSRRL--DDGSRA-LVC-AADRDRDQSYFLFATTREQLQFL 181

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GDIV +
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 241

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI LR+I
Sbjct: 242 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAARRQVVVGPREALLMDRIVLRDI 301

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  +D + DG + FV++RS++ P P +++  + G  V+    E GV+ GQACVFY
Sbjct: 302 NWIGDGALDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 361

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 362 DAAEGQARVLGGGFIKSA 379


>gi|39934381|ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           CGA009]
 gi|39648230|emb|CAE26749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris CGA009]
          Length = 401

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 6   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+VKF D
Sbjct: 66  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 126 LLATARELGASALATGHYVSSRRL--DDGSRA-LVC-AADRDRDQSYFLFATTREQLQFL 181

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GDIV +
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 241

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI LR+I
Sbjct: 242 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDI 301

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  +D + DG + FV++RS++ P P +++  + G  V+    E GV+ GQACVFY
Sbjct: 302 NWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 361

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 362 DAAEGQARVLGGGFIKSA 379


>gi|205822121|sp|Q6NA79|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 397

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGSRA-LVC-AADRDRDQSYFLFATTREQLQFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GDIV +
Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI LR+I
Sbjct: 238 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  +D + DG + FV++RS++ P P +++  + G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 358 DAAEGQARVLGGGFIKSA 375


>gi|316935452|ref|YP_004110434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris DX-1]
 gi|315603166|gb|ADU45701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris DX-1]
          Length = 401

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/378 (56%), Positives = 278/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A  RKG+CC
Sbjct: 6   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGAAIHRKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+VKF D
Sbjct: 66  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR     +   R ++C   D +RDQSYFLFATT++QL  L
Sbjct: 126 LLATARELGASALATGHYVSSRRL---ENGSRALVC-AADRDRDQSYFLFATTREQLQFL 181

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GDIV +
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDI 241

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI LR++
Sbjct: 242 DGRVLGQHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRQVVVGPREALLMDRIVLRDV 301

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  +D V DG + FV++RS+++P P +++  + G  V+    E GV+ GQACVFY
Sbjct: 302 NWIGDGALDDVVGDGLELFVRVRSTREPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 361

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 362 DAAEGQARVLGGGFIKSA 379


>gi|254503485|ref|ZP_05115636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Labrenzia alexandrii DFL-11]
 gi|222439556|gb|EEE46235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Labrenzia alexandrii DFL-11]
          Length = 449

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/381 (56%), Positives = 271/381 (71%), Gaps = 7/381 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSSVVAA++  +GYDVIGVTLQLY+   A  +  SCC
Sbjct: 59  LNSLDLPGRPEDTRVVVAMSGGVDSSVVAAMMHAEGYDVIGVTLQLYDHGAAVAKTKSCC 118

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARR  + I + HYV DYE RF+  V+  FA SY AGETP+PCV CN+TVKF+D
Sbjct: 119 AGVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTD 178

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGAD LATGHY+RS       G +R +  RP DL+RDQSYFLFATTQ+QL  +
Sbjct: 179 LLKTARDLGADALATGHYVRS----ATKGNKRALF-RPADLDRDQSYFLFATTQEQLDFV 233

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K  VR LA E GL +A+K DSQDICFV  G Y  V++++    A  G+IVH+
Sbjct: 234 RFPLGGMPKSQVRTLAEEFGLSVANKPDSQDICFVPNGDYAAVIRKLRPNAAEPGEIVHM 293

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG HNGII++TIGQRRG+GVA GEPL+VV LD +  RVIVGPRE+L    I LRE+
Sbjct: 294 DGRVLGEHNGIIHFTIGQRRGIGVATGEPLYVVRLDADERRVIVGPREALATRTILLREM 353

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GD   ++   D  + F K+RS++ P P  ++  +   +VD    E GVA GQACVF+
Sbjct: 354 NWIGDQPLDEG--DEIEVFAKVRSTRPPAPAALRILNGKAFVDLANGETGVAPGQACVFF 411

Query: 369 TSDSNEARVLGGGIISGSKRS 389
            SD   ARVLGGG I  ++R+
Sbjct: 412 DSDDETARVLGGGWIHKTERT 432


>gi|118593646|ref|ZP_01551022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stappia aggregata IAM 12614]
 gi|118433757|gb|EAV40418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stappia aggregata IAM 12614]
          Length = 392

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/380 (56%), Positives = 272/380 (71%), Gaps = 7/380 (1%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           NSLDL   P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+   A  +  SCCA
Sbjct: 3   NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKAEGYDVIGVTLQLYDHGAAVSKAKSCCA 62

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D++DARR  +TI + HYV DYE RF+  V+  FA SY AGETP+PCV CN+TVKF+DL
Sbjct: 63  GVDIHDARRAAETIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   + LGAD LATGHY+RS          +R + RP DL+RDQSYFLFATTQ QL  +R
Sbjct: 123 LKTAKDLGADALATGHYVRST-----QQGNKRALFRPADLDRDQSYFLFATTQDQLDFIR 177

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG M K  VR+LA E GL +A+K DSQDICFV  G Y +V++++    A  G+IVH++
Sbjct: 178 FPLGGMPKSKVRELAAEFGLTVANKPDSQDICFVPNGDYAEVIRKLRPNAAEPGEIVHMD 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG H+GII+YTIGQRRGLGVA G+PL+VV LD +  RV+VGPRE+L    I LRE+N
Sbjct: 238 GRVLGEHDGIIHYTIGQRRGLGVATGDPLYVVRLDPDERRVVVGPREALATRTILLREMN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W+GD   ++   D  + F K+RS++ P P  ++  +   +VD    E GVA GQACVF+ 
Sbjct: 298 WIGDQPLDEG--DEIELFAKVRSTRPPAPATLRILNGKGFVDLANGETGVAPGQACVFFD 355

Query: 370 SDSNEARVLGGGIISGSKRS 389
           +D   ARVLGGG I  ++R+
Sbjct: 356 TDDETARVLGGGWIHKTERT 375


>gi|154252635|ref|YP_001413459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156585|gb|ABS63802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
          Length = 462

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/368 (59%), Positives = 265/368 (72%), Gaps = 9/368 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           E T LNSLDL   P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A  RK
Sbjct: 63  EMTGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAVSRK 122

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD+ DARRV D I + HYV DYE+RFR AV+  FA SYAAGETP+PCV CN  V
Sbjct: 123 GACCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERV 182

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL   R LGA  LATGHYI SR      G   R + RP D ERDQSYFLFATTQ+Q
Sbjct: 183 KFRDLLDTARDLGAAALATGHYIASR-----RGAAGRELHRPRDEERDQSYFLFATTQEQ 237

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLG++ K   R LA  MGL++A K DSQDICFV  G+Y  +V+++  G +  G+
Sbjct: 238 LEFLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASAPGE 297

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEV 300
           +VHL+G++LGRH+GI+N+TIGQRRGLG+     + EPLFVV LD    +VIVGPRE+LE 
Sbjct: 298 VVHLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREALET 357

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
            ++ LR+INWLGDG F +   +G K   K+RS++ PVP  + R  +G  V+  +SE GVA
Sbjct: 358 QKLTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEGGVA 417

Query: 361 SGQACVFY 368
            GQACVFY
Sbjct: 418 PGQACVFY 425


>gi|299131958|ref|ZP_07025153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Afipia sp. 1NLS2]
 gi|298592095|gb|EFI52295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Afipia sp. 1NLS2]
          Length = 393

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/376 (57%), Positives = 267/376 (71%), Gaps = 4/376 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P   RVVVAMSGGVDSS  AALLK +GYDVIG+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGPPSGTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SY  GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYVLGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR     DG R   M    D +RDQSYFLFATTQ QL DL
Sbjct: 122 LLTTARELGAKALATGHYVASRRQA--DGSR--AMVCAADADRDQSYFLFATTQDQLNDL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR   L +A+K DSQDICFV  G+Y DV++R+       GDIV L
Sbjct: 178 RFPLGDMTKTQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMKPNALQPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G++LG H GI+N+TIGQRRG+G+A  EPL+VV LD  + RVIVGPR +L    I LR+I
Sbjct: 238 RGRVLGHHQGIVNFTIGQRRGIGIAAAEPLYVVALDAAARRVIVGPRAALRKSVITLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG FE A  +G   ++K+RS++ P    ++ N D   V+    E G++ GQACVFY
Sbjct: 298 NWIGDGSFERAATEGRDLYIKVRSTRPPQAAHLRMNGDHCEVELLAGEEGISPGQACVFY 357

Query: 369 TSDSNEARVLGGGIIS 384
            + + +ARVLGGG I+
Sbjct: 358 DAPAGQARVLGGGFIT 373


>gi|218460955|ref|ZP_03501046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli Kim 5]
          Length = 353

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/325 (63%), Positives = 251/325 (77%), Gaps = 1/325 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQQQ+
Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQQQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGD-GLFEDAVVDGFKCFVK 329
           R++NWLGD  L E A   GF C  K
Sbjct: 307 RDVNWLGDETLAEAASGGGFACTPK 331


>gi|115523063|ref|YP_779974.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisA53]
 gi|115517010|gb|ABJ04994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisA53]
          Length = 419

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/378 (56%), Positives = 279/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK +GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 21  LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRKGACC 80

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA+SYA GETP+PC++CNR++KF D
Sbjct: 81  AGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRD 140

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLS  R+LGA VLATGHY+ SR     DG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 141 LLSTARELGAAVLATGHYVSSRRL--PDGSRA-LVC-AADADRDQSYFLFATTREQLDFL 196

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y DVV R+       GDIV L
Sbjct: 197 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGDIVDL 256

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H+GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPR +L + RI LR++
Sbjct: 257 DGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRILLRDV 316

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GD   + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 317 NWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQACVFY 376

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 377 DAPEGQARVLGGGFIKSA 394


>gi|205822308|sp|A7HV69|MNMA_PARL1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 399

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/366 (59%), Positives = 264/366 (72%), Gaps = 9/366 (2%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSLDL   P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A  RKG+
Sbjct: 2   TGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAVSRKGA 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+ DARRV D I + HYV DYE+RFR AV+  FA SYAAGETP+PCV CN  VKF
Sbjct: 62  CCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERVKF 121

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL   R LGA  LATGHYI SR      G   R + RP D ERDQSYFLFATTQ+QL 
Sbjct: 122 RDLLDTARDLGAAALATGHYIASR-----RGAAGRELHRPRDEERDQSYFLFATTQEQLE 176

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG++ K   R LA  MGL++A K DSQDICFV  G+Y  +V+++  G +  G++V
Sbjct: 177 FLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASAPGEVV 236

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           HL+G++LGRH+GI+N+TIGQRRGLG+     + EPLFVV LD    +VIVGPRE+LE  +
Sbjct: 237 HLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREALETQK 296

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           + LR+INWLGDG F +   +G K   K+RS++ PVP  + R  +G  V+  +SE GVA G
Sbjct: 297 LTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEGGVAPG 356

Query: 363 QACVFY 368
           QACVFY
Sbjct: 357 QACVFY 362


>gi|205821605|sp|Q07SU0|MNMA_RHOP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 400

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/378 (56%), Positives = 279/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK +GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA+SYA GETP+PC++CNR++KF D
Sbjct: 62  AGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLS  R+LGA VLATGHY+ SR     DG R  ++C   D +RDQSYFLFATT++QL  L
Sbjct: 122 LLSTARELGAAVLATGHYVSSRRL--PDGSRA-LVC-AADADRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y DVV R+       GDIV L
Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H+GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPR +L + RI LR++
Sbjct: 238 DGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRILLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GD   + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 358 DAPEGQARVLGGGFIKSA 375


>gi|114706635|ref|ZP_01439536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fulvimarina pelagi HTCC2506]
 gi|114538027|gb|EAU41150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fulvimarina pelagi HTCC2506]
          Length = 394

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/383 (56%), Positives = 272/383 (71%), Gaps = 10/383 (2%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSLD+ K P+D RV+VAMSGGVDSSV AA+LK +GYDV+G+TLQLY++     + G+
Sbjct: 3   THLNSLDIPKAPEDTRVIVAMSGGVDSSVTAAILKDEGYDVVGITLQLYDAGDTPAKAGA 62

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+ DARRVCD + + HYV DYEE FR AVI PFA +Y AGETP+PCV CN+TVKF
Sbjct: 63  CCAGQDIRDARRVCDLLGIPHYVLDYEENFREAVIDPFADAYVAGETPIPCVSCNQTVKF 122

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQ 184
            DLL     LG D LATGHYI SR       KR   R + RP DL+RDQSYFL+ TTQ+Q
Sbjct: 123 RDLLKTAMDLGGDALATGHYIESR-------KRGNHRSLHRPFDLDRDQSYFLYGTTQKQ 175

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +  LRFPL  + K+  R++A + GL IA K DSQDICFV  G+Y D+V+R+       G+
Sbjct: 176 VDFLRFPLASLTKDETREIAAKHGLAIASKPDSQDICFVPTGRYSDLVRRLRPEAGDPGE 235

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IVH++G++LG H GIINYT+GQRRGLGVA GEPL+VV LD  + RV+VGPRE+L    + 
Sbjct: 236 IVHIDGRVLGEHEGIINYTVGQRRGLGVAAGEPLYVVKLDPATRRVVVGPREALATRAVR 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
           LRE+NWL +   E    +  + FVK+RS++ P P  +  + +G + V+   +E GVA GQ
Sbjct: 296 LREVNWLAEESAEVYATETREIFVKLRSTRPPSPARLAADGEGGWMVELLAAEYGVAKGQ 355

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           ACVFY ++   A VLGGGII GS
Sbjct: 356 ACVFYGAEGAGAEVLGGGIIDGS 378


>gi|209884347|ref|YP_002288204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oligotropha carboxidovorans OM5]
 gi|229486419|sp|B6JCC3|MNMA_OLICO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209872543|gb|ACI92339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oligotropha carboxidovorans OM5]
          Length = 393

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/383 (56%), Positives = 272/383 (71%), Gaps = 5/383 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P   RVVVAMSGGVDSS  AALLK +GYDVIG+TLQLY+  +A+ RKG+CC
Sbjct: 2   LNSLDLEGPPSSTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGEATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYALGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGA  LATGHY+ SR     DG R   M    D +RDQSYFLFATTQ QL  L
Sbjct: 122 LLTTAQELGAQALATGHYVASRRQ--PDGSR--AMVCAADADRDQSYFLFATTQDQLNHL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR   L +A+K DSQDICFV  G+Y DV++R+     L GDIV L
Sbjct: 178 RFPLGDMTKAQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMRPNAMLPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G++LG H GI N+T+GQRRG+G+A   PL+VV LD  S +VIVGPR +L  + I LR+I
Sbjct: 238 RGRVLGHHQGIANFTVGQRRGIGIAASMPLYVVALDAASRQVIVGPRAALRKNLITLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG F+D   +G   ++K+RS++ P P  ++ N D   V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGTFDDVAREGRDLYIKVRSTRPPQPAHLRMNGDHCEVELFAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIIS-GSKRSD 390
            + + +ARVLGGG I+  S  SD
Sbjct: 358 DAPTGQARVLGGGFITHASNNSD 380


>gi|170743223|ref|YP_001771878.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium sp. 4-46]
 gi|205816883|sp|B0UIW7|MNMA_METS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168197497|gb|ACA19444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium sp. 4-46]
          Length = 382

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/377 (57%), Positives = 268/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P+D RVVVAMSGGVDSSVVA LL+R GYDV+G+TLQLY+   A+ R+G+CC
Sbjct: 1   MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLRRQGYDVVGITLQLYDHGAATHRRGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARR  +T+ + HYV DYE+RFR AVI  FA SY  GETP+PCV+CNR++KF D
Sbjct: 61  AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFAESYIHGETPIPCVECNRSIKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+    LGAD LATGHY+ SR   G      R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLATALDLGADALATGHYVASRARPGGG----RALYRALDPARDQSYFLYATTPEQLDVL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K+  R LARE GL +ADK DSQDICFV QG+Y DV+ R+    A  G+IVHL
Sbjct: 177 RFPLGELPKDETRRLAREFGLAVADKPDSQDICFVPQGRYQDVIARLRPDAARPGEIVHL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH GII +T+GQRRGLG+A GEPL+VV LD  ++RV+VGPRE+L    I + E 
Sbjct: 237 DGRTLGRHEGIIGFTVGQRRGLGLATGEPLYVVRLDPETARVVVGPREALATSVIRIAET 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACV 366
           NWLGD    D  +DG    V++RS+++P P  ++ N       V  E  E GV+ GQAC 
Sbjct: 297 NWLGDEPLAD--LDGMPVAVRVRSTREPRPAALRWNRALACAEVVLETPEDGVSPGQACA 354

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   ARVLGGG I
Sbjct: 355 IYADDGPRARVLGGGTI 371


>gi|296446642|ref|ZP_06888583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylosinus trichosporium OB3b]
 gi|296255870|gb|EFH02956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylosinus trichosporium OB3b]
          Length = 411

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/403 (54%), Positives = 276/403 (68%), Gaps = 12/403 (2%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           V + T LNSL L K  +D RVVVAMSGGVDSSVVAALL   GYDV+GVTLQLY+  +A  
Sbjct: 8   VPDETELNSLGLPKPAQDTRVVVAMSGGVDSSVVAALLAEQGYDVVGVTLQLYDHGEAVH 67

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           RKGSCCAGQD++DARRV   + + HYV D+E RFR  VI  FA SYA+GETP+PCV CN+
Sbjct: 68  RKGSCCAGQDIHDARRVAARLGIPHYVLDFETRFRETVIDTFAQSYASGETPVPCVACNQ 127

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            VKF DL    + LGAD LATGHYI SR      G+  R + R MD  RDQSYFLFATT+
Sbjct: 128 FVKFVDLFETAKDLGADALATGHYIASR-----PGRGGRGLYRAMDAARDQSYFLFATTR 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            QL  LRFPLG+  K  VR+LAR   LD+A+K DSQDICFV  G Y D+V+R++ G A+ 
Sbjct: 183 PQLDMLRFPLGEYAKPDVRELARRFDLDVAEKPDSQDICFVPSGHYSDIVERLSPGAAVP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSRVIVGPRE 296
           G+IVH++G++LGRH G+I+YTIGQRRGLG+         +PL+VV LD   +RVIVGPRE
Sbjct: 243 GEIVHVDGRVLGRHAGVIHYTIGQRRGLGLGAAVAGRASDPLYVVRLDAARARVIVGPRE 302

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKS 355
           +LE   + LR++NW+G+G   D    G +   ++RS++ P P   +     G  V FE  
Sbjct: 303 ALETRSVRLRDVNWIGEGELADLPEGGLEIEARVRSTRPPTPARLLPLAGGGAQVLFETG 362

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           E GV+ GQACVFY  D   ARVLGGG I+ ++ +    E +L+
Sbjct: 363 EFGVSPGQACVFYDRDGARARVLGGGFIAAAEHAAEPTEPILA 405


>gi|323137322|ref|ZP_08072400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocystis sp. ATCC 49242]
 gi|322397309|gb|EFX99832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocystis sp. ATCC 49242]
          Length = 412

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/383 (55%), Positives = 267/383 (69%), Gaps = 11/383 (2%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           + L L  +P D RVVVAMSGGVDSSVVAALLK  GYDV+GVTLQLY+  +A+ RKG+CCA
Sbjct: 9   DPLILPASPGDTRVVVAMSGGVDSSVVAALLKEQGYDVVGVTLQLYDHGEATHRKGACCA 68

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           GQD+ DAR V   + + H+V DYE RFR  VI  FA+SYA+GETP+PCV CN+ +KF+DL
Sbjct: 69  GQDIQDARAVAARLGIPHFVLDYERRFREKVIDEFAASYASGETPVPCVACNQFIKFADL 128

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               + LGA VLATGHYI SR    DDG+  R + R  D  RDQSYFLFATT++QL  LR
Sbjct: 129 FETAKDLGAHVLATGHYISSR----DDGEGGRALYRAKDASRDQSYFLFATTREQLRMLR 184

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLGD  K  VR++AR  GL++ADK DSQDICFV  G+Y DVV+R+     + GDIVH++
Sbjct: 185 FPLGDYTKAEVREMARNYGLEVADKPDSQDICFVPSGRYTDVVERLAPDAVVPGDIVHVD 244

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           G++LGRH G+++YTIGQRRGLG+         EPLFVV LD   + V+VGPRE+LE   +
Sbjct: 245 GRVLGRHAGVVHYTIGQRRGLGLGASVAGRDAEPLFVVRLDAARAEVVVGPREALETRAV 304

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASG 362
            LR++NW+G G F D    G     ++RS++ PVP   + R D    V F  SE GV+ G
Sbjct: 305 ALRDVNWIGSGEFNDMPPQGIDIMARVRSTRPPVPARLIAREDSSATVVFAASEFGVSPG 364

Query: 363 QACVFYTSDSNEARVLGGGIISG 385
           QACVFY    + ARVLGGG I+ 
Sbjct: 365 QACVFYDRADDAARVLGGGFIAA 387


>gi|220925891|ref|YP_002501193.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium nodulans ORS
           2060]
 gi|254811453|sp|B8IU32|MNMA_METNO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219950498|gb|ACL60890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium nodulans ORS 2060]
          Length = 382

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/377 (56%), Positives = 266/377 (70%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P+D RVVVAMSGGVDSSVVA LLKR GYDV+G+TLQLY+   A+ R+G+CC
Sbjct: 1   MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLKRQGYDVVGITLQLYDHGAATHRRGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARR  +T+ + HYV DYE+RFR AVI  FA SY  GETP+PCV+CNR++KF D
Sbjct: 61  AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFADSYIHGETPIPCVECNRSIKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+    LGAD LATGHY+ SR   G      R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLATALDLGADALATGHYVASRPRPGGS----RALYRALDPARDQSYFLYATTAEQLDVL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K+  R LARE GL +ADK DSQDICFV QG+Y DV+ R+       G+IVHL
Sbjct: 177 RFPLGELPKDETRRLAREFGLSVADKPDSQDICFVPQGRYQDVIARLRPDSVRPGEIVHL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GII +T+GQRRGL +A GEPL+VV LD  ++RV+VGPRE+L    I L E 
Sbjct: 237 DGRTLGRHDGIIGFTVGQRRGLKLATGEPLYVVRLDPETARVVVGPREALATSVIRLAET 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           NWLGD    +  +DG    V++RS+++P P  ++ N       V     E GV+ GQAC 
Sbjct: 297 NWLGDEPLTE--LDGMPVAVRVRSTREPRPATLRWNRAASCAEVMLATPEDGVSPGQACA 354

Query: 367 FYTSDSNEARVLGGGII 383
            Y  +   ARVLGGG I
Sbjct: 355 IYADEGPRARVLGGGTI 371


>gi|170751444|ref|YP_001757704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
 gi|205816882|sp|B1LV15|MNMA_METRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170657966|gb|ACB27021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 384

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/385 (55%), Positives = 273/385 (70%), Gaps = 10/385 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LDL K P + RVVVAMSGGVDSSVVA LLKR G+DV+GVTLQLY+   AS RKG+CC
Sbjct: 1   MNALDLPKAPHETRVVVAMSGGVDSSVVAGLLKRQGFDVVGVTLQLYDHGAASHRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR   + + + HYV DYE+RFR+ VI  FA SY AGETP+PCV+CNRTVKF D
Sbjct: 61  AGQDIHDARAAAEHLGIPHYVLDYEDRFRDEVIEKFAESYLAGETPIPCVECNRTVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R L AD LATGHY+ SR   G      R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLGLARDLDADALATGHYVASRALPGGG----RALHRALDPARDQSYFLYATTAEQLDFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+M+K   R LA+E+GL +A+K DSQDICFV QG+Y DV+ R+    A  G+IV L
Sbjct: 177 RFPLGEMEKTETRALAKELGLSLAEKPDSQDICFVPQGRYSDVIARLRPDAARPGEIVDL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G +LGRH+GI++YT+GQR+GLG++  EPL+VV L+ +++RV+VGPR +L   RI L ++
Sbjct: 237 DGHVLGRHDGIVHYTVGQRKGLGLSGPEPLYVVRLEPDAARVVVGPRTALATTRIRLSDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           NWLG+G  E   V      V++RS++ P P  +    DG V V   + E GV+ GQAC  
Sbjct: 297 NWLGEGPAE--AVRDLPVAVRVRSTRPPRPATLTVGPDGAVEVVLAEPEDGVSPGQACAI 354

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  D   ARVLGGG I   +R DA+
Sbjct: 355 YADDGPRARVLGGGTI---RRVDAL 376


>gi|158425974|ref|YP_001527266.1| tRNA-specific 2-thiouridylase MnmA [Azorhizobium caulinodans ORS
           571]
 gi|172047846|sp|A8HVS0|MNMA_AZOC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158332863|dbj|BAF90348.1| TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azorhizobium caulinodans ORS 571]
          Length = 390

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/378 (57%), Positives = 265/378 (70%), Gaps = 5/378 (1%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+  +P   RVVVAMSGGVDSSVVA LL R G+DV+GVTLQLY+  +A++RKG+CCAGQD
Sbjct: 7   DIGTDPASTRVVVAMSGGVDSSVVAGLLARAGFDVVGVTLQLYDQGEAARRKGACCAGQD 66

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +YDAR V D + + HYV DYE RFR  VI  FA SYAAG TP+PCVDCNRTVKF DLL+ 
Sbjct: 67  IYDARDVADRLGIPHYVLDYESRFREEVIERFADSYAAGFTPIPCVDCNRTVKFRDLLAT 126

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGA VLATGHY+ SR     DG  RR + R  +  RDQSYFL+ATTQ Q   LRFPL
Sbjct: 127 AEDLGASVLATGHYVASRAL--PDG--RRGLFRAAEENRDQSYFLYATTQAQATKLRFPL 182

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G M+K  VR LA E+GL +ADK DSQDICFV  G Y +VV+R+       GDIVHL+G++
Sbjct: 183 GGMRKSDVRALAAELGLPVADKPDSQDICFVPGGDYAEVVERLRPEAGEAGDIVHLDGRV 242

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRH G+++YTIGQR+GLG++  EPL+VV +D     V VGPRE+L V  I L +INWLG
Sbjct: 243 LGRHRGVMHYTIGQRKGLGISTPEPLYVVAIDAARREVRVGPREALAVRSIGLTDINWLG 302

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
           D    DA       +VK+RS++ P P  + R+ DG   V+    E GVA GQACVFY + 
Sbjct: 303 DVPLLDACAAEQDIYVKVRSTRPPTPARLLRDADGAPTVELLAGEEGVAPGQACVFYDAA 362

Query: 372 SNEARVLGGGIISGSKRS 389
           S  AR+LGGG I  ++R+
Sbjct: 363 SGAARLLGGGTIVRAERA 380


>gi|240140914|ref|YP_002965394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|254563424|ref|YP_003070519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens DM4]
 gi|240010891|gb|ACS42117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|254270702|emb|CAX26706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 410

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 26  MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 85

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 86  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 145

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R+LGA+ LATGHY+ SR     +G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 146 LLGLARELGAEALATGHYVASRAR--PEGG--RALYRALDPARDQSYFLYATTPEQLAYL 201

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G+IV L
Sbjct: 202 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 261

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 262 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 321

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLGDG  ED V       V++RS+++P P  +  N  +    V+    E GV+ GQACV
Sbjct: 322 NWLGDGAPEDIVER--PVAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 379

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 380 IYADDDPRAQVLGGGTI 396


>gi|83859630|ref|ZP_00953150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851989|gb|EAP89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 433

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/375 (55%), Positives = 270/375 (72%), Gaps = 8/375 (2%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+L   P D RVV AMSGGVDSSVVAA+L R GY V+G+TLQLY+  +A  RKG+CCAGQ
Sbjct: 66  LNLGGEPSDHRVVAAMSGGVDSSVVAAVLHRAGYQVVGMTLQLYDHGEAVHRKGACCAGQ 125

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D++DARRV + +  +HYV DYE RFR AVI  FA +Y AG TP+PCV CN++VKF+DLL+
Sbjct: 126 DIHDARRVAEAMGFAHYVLDYETRFREAVIEDFADTYLAGFTPIPCVRCNQSVKFADLLA 185

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++QLGAD L TGHYI+ R   G+  + RR      D  +DQSYFLFATT++QL  LRFP
Sbjct: 186 TSKQLGADCLVTGHYIQ-RTMSGNRPELRRAA----DAGKDQSYFLFATTEEQLDYLRFP 240

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + KE  R+LA  +GL +A K DSQDICFV  G Y  VV+++  G +  G+IVHL+G+
Sbjct: 241 LGHLNKEQTRELAAALGLIVAAKPDSQDICFVPDGDYAAVVEKVRPGASRPGEIVHLDGR 300

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H G++ YT+GQRRGLG+A GEPL+VV LD  +++VIVGPRE+L+V RI L ++NW+
Sbjct: 301 VMGEHEGVLRYTVGQRRGLGIATGEPLYVVRLDAENAQVIVGPREALQVRRITLTDVNWI 360

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           GDG   +A  DG    +K+RS++ P P  ++   DGV+V  E  E GVA GQACVFY S 
Sbjct: 361 GDGDLSEA--DGLTVGIKVRSTRPPKPAILEVTGDGVFVLLETGEEGVAPGQACVFY-SH 417

Query: 372 SNEARVLGGGIISGS 386
            +  RVLGGG I  +
Sbjct: 418 PDHDRVLGGGWIRAT 432


>gi|218532352|ref|YP_002423168.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium
           chloromethanicum CM4]
 gi|218524655|gb|ACK85240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium chloromethanicum CM4]
          Length = 410

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 26  MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 85

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 86  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFADSYLSGETPIPCVECNRSVKFRD 145

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R+LGA+ LATGHY+ SR     +G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 146 LLGLARELGAEALATGHYVASRAR--PEGG--RALYRALDPARDQSYFLYATTPEQLAYL 201

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G+IV L
Sbjct: 202 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 261

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 262 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 321

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLGDG  ED V       V++RS+++P P  +  N  +    V+    E GV+ GQACV
Sbjct: 322 NWLGDGTPEDIVER--PVAVRVRSTREPRPGRLSWNAAEACAEVELLVPEDGVSPGQACV 379

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 380 IYADDDPRAQVLGGGTI 396


>gi|154244361|ref|YP_001415319.1| tRNA-specific 2-thiouridylase MnmA [Xanthobacter autotrophicus Py2]
 gi|154158446|gb|ABS65662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthobacter autotrophicus Py2]
          Length = 436

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/383 (55%), Positives = 263/383 (68%), Gaps = 5/383 (1%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T L  LD D +P   RVVVAMSGGVDSSVVA L  R GYDV+GVTLQLY+  +A+ R+G+
Sbjct: 49  TDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHRRGA 108

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+YDA  V  T+ + HYV DYE RF+  VI  FA+SYA+G TP+PCVDCNRTVKF
Sbjct: 109 CCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKF 168

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL+   +LGA  LATGHY+ SR     DG  RR + R  +  RDQSYFL+ATT  QL 
Sbjct: 169 RDLLATAEELGARYLATGHYVASRAL--PDG--RRGLYRAAEEARDQSYFLYATTAAQLE 224

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG+M+K  VR LA E GL +ADK DSQDICFV  G Y  VV+R+    A  GDIV
Sbjct: 225 RLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPGDIV 284

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           HL+G++LGRH G+++YTIGQR+GLG+A  EPL+V+ +D    +V VGPR +L V  I + 
Sbjct: 285 HLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAITID 344

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQAC 365
           ++NWLGD  F DA+      +VK+RS++ PVP  + R  DG   V     E GVA GQAC
Sbjct: 345 DVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPGQAC 404

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           V Y      AR+LGGG I  ++R
Sbjct: 405 VLYDDAGAAARLLGGGTIMRAER 427


>gi|163853494|ref|YP_001641537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|163665099|gb|ABY32466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens PA1]
          Length = 410

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/377 (55%), Positives = 270/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 26  MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 85

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 86  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 145

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R LGA+ LATGHY+ SR     +G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 146 LLGLARDLGAEALATGHYVASRAR--PEGG--RALYRALDPARDQSYFLYATTPEQLAYL 201

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G+IV L
Sbjct: 202 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 261

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 262 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 321

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLGDG  ED  +      V++RS+++P P  +  N  +    V+    E GV+ GQACV
Sbjct: 322 NWLGDGAPED--IAERPVAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 379

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 380 IYADDDPRAQVLGGGTI 396


>gi|23012016|ref|ZP_00052207.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 403

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/377 (54%), Positives = 271/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 19  MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 78

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE++FR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 79  AGRDIHDARAVAETLGIPHYVLDYEDKFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 138

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL++ R LGA+ LATGHY+ SR  + + G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 139 LLALARDLGAEALATGHYVASR-PLAEGG---RGLFRALDPARDQSYFLYATTPEQLAFL 194

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++    A  G IV L
Sbjct: 195 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGAIVDL 254

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 255 DGRHLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 314

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE--KSEVGVASGQACV 366
           NWLG G  E   +      V++RS+++P P  +  N +    + E    E GV+ GQACV
Sbjct: 315 NWLGGGTPES--LAELPVAVRVRSTREPRPARLSWNAEAACAEVELVAPEDGVSPGQACV 372

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 373 IYADDGPRAQVLGGGTI 389


>gi|205829088|sp|A7ICB9|MNMA_XANP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 389

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/383 (55%), Positives = 263/383 (68%), Gaps = 5/383 (1%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T L  LD D +P   RVVVAMSGGVDSSVVA L  R GYDV+GVTLQLY+  +A+ R+G+
Sbjct: 2   TDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHRRGA 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+YDA  V  T+ + HYV DYE RF+  VI  FA+SYA+G TP+PCVDCNRTVKF
Sbjct: 62  CCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKF 121

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL+   +LGA  LATGHY+ SR     DG  RR + R  +  RDQSYFL+ATT  QL 
Sbjct: 122 RDLLATAEELGARYLATGHYVASRAL--PDG--RRGLYRAAEEARDQSYFLYATTAAQLE 177

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG+M+K  VR LA E GL +ADK DSQDICFV  G Y  VV+R+    A  GDIV
Sbjct: 178 RLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPGDIV 237

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           HL+G++LGRH G+++YTIGQR+GLG+A  EPL+V+ +D    +V VGPR +L V  I + 
Sbjct: 238 HLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAITID 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQAC 365
           ++NWLGD  F DA+      +VK+RS++ PVP  + R  DG   V     E GVA GQAC
Sbjct: 298 DVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPGQAC 357

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           V Y      AR+LGGG I  ++R
Sbjct: 358 VLYDDAGAAARLLGGGTIMRAER 380


>gi|205822340|sp|A9W8W7|MNMA_METEP RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 385

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/377 (55%), Positives = 270/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 1   MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 61  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R LGA+ LATGHY+ SR     +G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLGLARDLGAEALATGHYVASR--ARPEGG--RALYRALDPARDQSYFLYATTPEQLAYL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G+IV L
Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLGDG  ED  +      V++RS+++P P  +  N  +    V+    E GV+ GQACV
Sbjct: 297 NWLGDGAPED--IAERPVAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 354

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 355 IYADDDPRAQVLGGGTI 371


>gi|114798727|ref|YP_759370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomonas neptunium ATCC 15444]
 gi|123323559|sp|Q0C4H3|MNMA_HYPNA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114738901|gb|ABI77026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomonas neptunium ATCC 15444]
          Length = 394

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/379 (54%), Positives = 263/379 (69%), Gaps = 6/379 (1%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A R+NSL   K P + RVV AMSGGVDSSVVAA+LK +GYDVIG+TLQLY+   A ++KG
Sbjct: 10  AGRVNSLGFAKPPHETRVVAAMSGGVDSSVVAAMLKAEGYDVIGITLQLYDHGAAIEKKG 69

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +CCAGQD++DAR V D I + HYV DYE RFR  V+  FA +Y +G TP+PC+ CN+TVK
Sbjct: 70  ACCAGQDIHDARNVSDAIGIPHYVLDYESRFREQVMEDFADTYLSGSTPIPCIRCNQTVK 129

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIR       DG     + R  D  RDQSYFLFATT+ QL
Sbjct: 130 FADLLATAKELGADCLATGHYIRR-----TDGPEGPELHRAQDASRDQSYFLFATTRAQL 184

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K  VR+LA +  L +A K DSQDICFV  G Y  VV+++  G    G+I
Sbjct: 185 DFLRFPLGSLPKSEVRELAEKFALQVAAKPDSQDICFVPDGSYAKVVEKLRPGSGRGGEI 244

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG+H G+I+YTIGQRRGLGVA G+PLFVV +D  + RVIVGPRE+L    + L
Sbjct: 245 VHLDGRVLGKHEGVIHYTIGQRRGLGVATGDPLFVVKIDAPARRVIVGPREALMTRGLLL 304

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            E+NWLG G  E+A   G +  +++RS++ PVP  +   D    V F+  E GVA GQA 
Sbjct: 305 EELNWLGQGSLEEAATHGARVLIRVRSTRPPVPGRLGYEDGVPAVFFDAPEEGVARGQAA 364

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  + +  R+LGGG I+
Sbjct: 365 VLYDLEGS-TRILGGGFIA 382


>gi|298292472|ref|YP_003694411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Starkeya novella DSM 506]
 gi|296928983|gb|ADH89792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Starkeya novella DSM 506]
          Length = 395

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/358 (57%), Positives = 256/358 (71%), Gaps = 6/358 (1%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQ 71
           D  ++P   RVVVAMSGGVDSSVVAAL  + GYDV+GVTLQLY+  +A   R G+CCAGQ
Sbjct: 6   DTSRSPSHTRVVVAMSGGVDSSVVAALYAKAGYDVVGVTLQLYDHGEAMHHRPGACCAGQ 65

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDAR V + + + HYV DYE RFR+AVI  FA +YAAGETP+PCVDCNRTVKF DLL 
Sbjct: 66  DIYDARTVAEKLGIPHYVLDYESRFRHAVIERFADAYAAGETPIPCVDCNRTVKFRDLLE 125

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R LGAD+LATGHY+ SR   G     RR + RP+D  RDQSYFL+ATTQ+Q+  LRFP
Sbjct: 126 TARDLGADILATGHYVTSRALEGG----RRALFRPLDESRDQSYFLYATTQEQIDMLRFP 181

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG+  K  VR LA E GL +ADK DSQDICFV  G Y  +V+++    A  G+IVHL+G+
Sbjct: 182 LGETTKPEVRALAEEFGLKVADKPDSQDICFVPNGHYTAIVEKLRPEAAEPGEIVHLDGR 241

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG+H G++ YTIGQR+GLG+A  EPL+VV +D    RV+VGPR +L V  I + E+NWL
Sbjct: 242 VLGQHAGVMRYTIGQRKGLGIAASEPLYVVGIDAGRRRVLVGPRAALGVSAIRIDEVNWL 301

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           GD   + A   G   +VK+RS++ PVP  + R +D GV V    +E GVA GQACVFY
Sbjct: 302 GDETLDAAAEAGRDLYVKVRSARAPVPGHLARASDGGVEVHLAGAEEGVAPGQACVFY 359


>gi|312116059|ref|YP_004013655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221188|gb|ADP72556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 395

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/375 (54%), Positives = 260/375 (69%), Gaps = 9/375 (2%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +L L  +P   R+VVAMSGGVDSS+ AAL+KR GYD +G+TLQLY+  +A  RKG+CCAG
Sbjct: 23  ALGLTGSPSSHRIVVAMSGGVDSSLTAALVKRAGYDTVGITLQLYDHGEAMARKGACCAG 82

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           QD+ DAR V D + V HYV DYE+RFR +VI  FA SY AGETP+PCV CN+TVKF DLL
Sbjct: 83  QDIMDARGVADRLGVPHYVLDYEDRFRQSVIDDFADSYLAGETPVPCVRCNQTVKFRDLL 142

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              R+LGA  L TGHY+RS       G R   M +  D +RDQSYFLFATTQ QL  LRF
Sbjct: 143 GAARELGASALVTGHYVRSV-----PGPRGIEMHQAADPDRDQSYFLFATTQAQLDFLRF 197

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PLG M K   R++A  + L +A K DSQDICFV  G Y  +++++       G+IVH +G
Sbjct: 198 PLGGMTKTETREMAAALHLPVASKPDSQDICFVPSGDYASIIRKLRPESGEPGEIVHADG 257

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++LG+H GIIN+T+GQR+GLG+A GEPLFV+ ++ ++ RVIVGPRE L   R+ LR++NW
Sbjct: 258 RVLGQHPGIINFTVGQRKGLGIATGEPLFVIRIEPSARRVIVGPREMLRTARLSLRDVNW 317

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDP--VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           +G G  ++AV  G   FVK+RS+Q P    +F +R   GV VD    E GVA+GQACVFY
Sbjct: 318 IGGGSLDEAVAGGRSLFVKVRSTQPPREARLFAERG--GVGVDLAGGEFGVAAGQACVFY 375

Query: 369 TSDSNEARVLGGGII 383
                 ARVLGGG I
Sbjct: 376 DRAGGAARVLGGGFI 390


>gi|188583764|ref|YP_001927209.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium populi BJ001]
 gi|179347262|gb|ACB82674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium populi BJ001]
          Length = 395

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 11  MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 70

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 71  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 130

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R LGA+ LATGHY+ SR     +G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 131 LLGMARDLGAEALATGHYVASR--AQPEGG--RALYRALDPARDQSYFLYATTPEQLAFL 186

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++    A  G+IV L
Sbjct: 187 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGEIVDL 246

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 247 DGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 306

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLG     D + D     V++RS+++P P  +  N  +  + V+    E GV+ GQACV
Sbjct: 307 NWLGS-RAPDGLAD-LPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPGQACV 364

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 365 IYADDGPRAQVLGGGTI 381


>gi|205822346|sp|B1ZGZ6|MNMA_METPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 385

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 1   MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 61  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R LGA+ LATGHY+ SR     +G   R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLGMARDLGAEALATGHYVASR--AQPEGG--RALYRALDPARDQSYFLYATTPEQLAFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++    A  G+IV L
Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGEIVDL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLG     D + D     V++RS+++P P  +  N  +  + V+    E GV+ GQACV
Sbjct: 297 NWLGS-RAPDGLAD-LPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPGQACV 354

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 355 IYADDGPRAQVLGGGTI 371


>gi|114569244|ref|YP_755924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maricaulis maris MCS10]
 gi|122316614|sp|Q0ARV1|MNMA_MARMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114339706|gb|ABI64986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maricaulis maris MCS10]
          Length = 405

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/374 (55%), Positives = 264/374 (70%), Gaps = 10/374 (2%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           + L L  NP D RVVVAMSGGVDSSV AALL   GYDV+GVTLQLY+   A  +KG+CCA
Sbjct: 25  DPLGLGGNPGDHRVVVAMSGGVDSSVTAALLHHLGYDVVGVTLQLYDHGAAMAKKGACCA 84

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           GQD+YDA+RV +     HYV DYE RFR AVI  FA +Y AG TP+PCV CN+TVKF+DL
Sbjct: 85  GQDIYDAKRVAEACGFRHYVLDYESRFREAVIEEFADTYLAGFTPIPCVRCNQTVKFADL 144

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L+  RQLGA  +ATGHYI+       DG     + R  D  +DQSYFLFATT  QL  LR
Sbjct: 145 LTTARQLGAVCMATGHYIQRV-----DGPNGAELRRAADAGKDQSYFLFATTHDQLDFLR 199

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG + K+  R+LA   GL +ADK DSQDICFV  G+Y D+V+++  G +  G+IVH++
Sbjct: 200 FPLGHLNKDQTRELAEAFGLIVADKPDSQDICFVPNGRYVDIVEKVRPGASRPGEIVHVD 259

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG H G+I YT+GQRRGL +A+G+PL+VV LD   + V+VGPRE+LE+  I L++IN
Sbjct: 260 GRVLGTHEGVIRYTVGQRRGLKIAVGDPLYVVRLDAAKAEVVVGPREALEIDTIALKDIN 319

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           WLGD    +A +DG    VK+RS++ PVP  +  + D + V   + E GVA GQACVFY+
Sbjct: 320 WLGD----EAPLDGAPVRVKVRSTRPPVPAALSVDGDDIRVVLARGEEGVAPGQACVFYS 375

Query: 370 SDSNEARVLGGGII 383
           SD +E RVLGGG I
Sbjct: 376 SD-DEDRVLGGGWI 388


>gi|218682213|ref|ZP_03529814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli CIAT 894]
          Length = 294

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/294 (64%), Positives = 232/294 (78%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     D   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPLADKPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR
Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHR 294


>gi|329890336|ref|ZP_08268679.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brevundimonas diminuta ATCC 11568]
 gi|328845637|gb|EGF95201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brevundimonas diminuta ATCC 11568]
          Length = 410

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/371 (55%), Positives = 259/371 (69%), Gaps = 7/371 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+  +A K+KG+CCAGQD++DAR
Sbjct: 42  PQGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGEALKKKGACCAGQDIHDAR 101

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              D I + HYV DYE RF++AVI  FA SY  G+TP+PC+ CN+TVKF DLL V R LG
Sbjct: 102 LAADLIGIPHYVLDYENRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 161

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY+R   +    G R + M + +D  RDQSYFLFATTQ QL  LRFPL D++K
Sbjct: 162 AEAMATGHYVRRATH----GNRSQ-MRKAVDHSRDQSYFLFATTQDQLDYLRFPLADLEK 216

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A  +GL IA K DSQDICFV  G Y  ++ R+       GDIVH++G++LGRH+
Sbjct: 217 PQVRGVAASLGLRIAAKPDSQDICFVPTGDYRTLIDRLRPQGREAGDIVHMDGRVLGRHS 276

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           GI +YTIGQRRGL VA+GEPLFVV LD +  RVIVGPRE+L   R+ L E NWLGD    
Sbjct: 277 GITDYTIGQRRGLNVAVGEPLFVVKLDPDHRRVIVGPREALLTARLTLEETNWLGDQATI 336

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E+A  DG     ++RS++ P P  +   D  V V F++ E GVA GQACV Y    +E R
Sbjct: 337 EEAARDGAPVLARVRSTRQPSPARLALVDGAVQVVFDQGEEGVAPGQACVLYDPADDE-R 395

Query: 377 VLGGGIISGSK 387
           V+GGG I  ++
Sbjct: 396 VMGGGFIHSTE 406


>gi|315497620|ref|YP_004086424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Asticcacaulis excentricus CB 48]
 gi|315415632|gb|ADU12273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Asticcacaulis excentricus CB 48]
          Length = 402

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/376 (54%), Positives = 262/376 (69%), Gaps = 10/376 (2%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV AMSGGVDSSV AALL   GY+VIGVTLQLY+  +A K+ G+CCAGQD++DAR   +
Sbjct: 36  RVVAAMSGGVDSSVAAALLHAAGYEVIGVTLQLYDHGQALKKTGACCAGQDIHDARVAAE 95

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I ++HYV DYE RF+++VI  FA SY  GETP+PC+ CN+TVKF DLL V R LGA+ +
Sbjct: 96  KIGIAHYVLDYESRFKDSVIEEFADSYLRGETPVPCIRCNQTVKFRDLLDVARDLGAEAM 155

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+  R    D G R  +  R +D  RDQSYFLFATT++QL  LRFPL D+ K  VR
Sbjct: 156 ATGHYVERR----DTGNRAELR-RAIDRNRDQSYFLFATTREQLDFLRFPLADIPKPQVR 210

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           D+AR+MGL++A K DSQDICFV +GKY  ++ R+       GDIVHL+G++LG+H GI  
Sbjct: 211 DIARQMGLNVAAKPDSQDICFVPEGKYTTLIDRLRPQGREAGDIVHLDGRVLGKHQGITG 270

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG-LFEDAV 320
           YTIGQRRGL +A+GEPLFV+ LD  + RVIVGPRE+L    + ++E NWLGD    E A 
Sbjct: 271 YTIGQRRGLNIAVGEPLFVIKLDAETRRVIVGPREALNTAALVMKETNWLGDHETLESAA 330

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   ++RS++ PVP  +   +  V V F+ SE GVA GQACV Y   ++E RVLGG
Sbjct: 331 AAHLPVLARVRSTRPPVPARLNLREGQVEVVFDASEEGVAPGQACVLY-DPADEDRVLGG 389

Query: 381 GIISGSKRSDAVEESL 396
           G I   +R+  VE +L
Sbjct: 390 GFI---ERTRPVELAL 402


>gi|254294555|ref|YP_003060578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hirschia baltica ATCC 49814]
 gi|254043086|gb|ACT59881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hirschia baltica ATCC 49814]
          Length = 409

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/375 (52%), Positives = 259/375 (69%), Gaps = 6/375 (1%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  DK   + RVV AMSGGVDS+VVAALL   GYDV+GVTLQLY+   A K++G+CCAGQ
Sbjct: 31  LGFDKPRSETRVVAAMSGGVDSTVVAALLHHAGYDVVGVTLQLYDHGAALKKQGACCAGQ 90

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D++DARR CD + + HYV DYE RF+  V+  FA +Y AG TP+PCV CN+TVKF DLL 
Sbjct: 91  DIHDARRACDALGIPHYVLDYESRFKEQVMEDFADTYLAGSTPIPCVRCNQTVKFRDLLE 150

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++ LGAD +ATGHYIR    VG++G     + R  D ++DQSYFLFATT +QL  LRFP
Sbjct: 151 TSKDLGADCMATGHYIRR--VVGENGPE---LARAADPDKDQSYFLFATTHEQLDYLRFP 205

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG M KES R +A  +GL++A K DSQDICFV  GKY  +V+++  G   +G+IVH++G+
Sbjct: 206 LGGMNKESTRKVASALGLEVASKPDSQDICFVPDGKYTAIVEKLRPGSGRKGEIVHMDGR 265

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H G+I YT+GQRRGLGVA GEP++VV +D    +VIVGPRE+LE   + + E NWL
Sbjct: 266 VLGEHEGVIKYTVGQRRGLGVATGEPIYVVKIDAGKRQVIVGPREALETRGLSMGESNWL 325

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G    E+A         ++RS++ P    +   +      FE +E GVA GQACV Y++ 
Sbjct: 326 GANSLEEACASNTPALARVRSTRPPKAGHMAMINGQPGFMFEDAEEGVAPGQACVLYST- 384

Query: 372 SNEARVLGGGIISGS 386
            + +RVLGGG I+G+
Sbjct: 385 GDASRVLGGGFITGT 399


>gi|300023996|ref|YP_003756607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525817|gb|ADJ24286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 397

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/369 (52%), Positives = 254/369 (68%), Gaps = 6/369 (1%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVVAMSGGVDSSV AA++K  G+DVIGVTLQLY+   A+ RKGSCCAGQD++DARRV D
Sbjct: 16  RVVVAMSGGVDSSVAAAIMKAAGHDVIGVTLQLYDHGSATGRKGSCCAGQDIHDARRVAD 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV DYE RF   VI  FA SY  GETP+PCV CN  +KF DLL   + LGA+VL
Sbjct: 76  ALGIPHYVLDYEARFAQKVIESFAESYVHGETPIPCVTCNNEIKFRDLLETAKDLGAEVL 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY++ R     D +    + R +D +RDQSYFLF  T+ QL  L FP+G ++K  VR
Sbjct: 136 VTGHYVQRR-----DTEHGPELARAVDTDRDQSYFLFGITKAQLAALWFPVGALEKSEVR 190

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           DLAR   L +ADKSDSQDICFV  G+Y DV++R+       G+IVHL+G++LGRH GI++
Sbjct: 191 DLARSFNLPVADKSDSQDICFVPTGRYTDVIERLKPNALDAGNIVHLDGRVLGRHEGIVH 250

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRG+ +   EPL+VV LD   + V+VGPR +L    + LR++NWLG+  F ++  
Sbjct: 251 YTVGQRRGIKIPAAEPLYVVRLDAAKNEVVVGPRSALTTTGLILRDVNWLGENSFAESAR 310

Query: 322 DGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           +G + FV++RSSQ      V  + + G  V+    E G+A+GQACVFY S    ARVLGG
Sbjct: 311 NGLELFVRMRSSQKLRAALVTADGETGGKVELHDGEEGIATGQACVFYASQEPGARVLGG 370

Query: 381 GIISGSKRS 389
           G I+ + ++
Sbjct: 371 GWIAKTVKA 379


>gi|221233878|ref|YP_002516314.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter crescentus NA1000]
 gi|220963050|gb|ACL94406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus NA1000]
          Length = 410

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/373 (54%), Positives = 261/373 (69%), Gaps = 6/373 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A  RKG+CCAGQD+ DAR
Sbjct: 35  PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 95  MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++ R   G+ G R  +  R  D  +DQSYFLFATT++QL  LRFPLG M K
Sbjct: 155 AEAMATGHYVQ-RAMPGNGGNRPELR-RAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 212

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A  +GL IADK DSQDICFV +GKY  V+ RI    A  GD+VHL+G++LGRH 
Sbjct: 213 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 272

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG--DGL 315
           G+  YTIGQRRGL +A+G+PLFVV ++ +  +VIVGPRE+L    + L+E +WLG  D L
Sbjct: 273 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 332

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            E A  DG +   ++RS+++PVP  +   D  + V F+ +E GVA GQACV Y   ++  
Sbjct: 333 -EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPD 390

Query: 376 RVLGGGIISGSKR 388
           RVLGGG I+G+ R
Sbjct: 391 RVLGGGFIAGTTR 403


>gi|16125150|ref|NP_419714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus CB15]
 gi|14195261|sp|P58074|MNMA_CAUCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13422162|gb|AAK22882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus CB15]
          Length = 383

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/373 (54%), Positives = 261/373 (69%), Gaps = 6/373 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A  RKG+CCAGQD+ DAR
Sbjct: 8   PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 68  MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 127

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++ R   G+ G R  +  R  D  +DQSYFLFATT++QL  LRFPLG M K
Sbjct: 128 AEAMATGHYVQ-RAMPGNGGNRPELR-RAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 185

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A  +GL IADK DSQDICFV +GKY  V+ RI    A  GD+VHL+G++LGRH 
Sbjct: 186 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 245

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG--DGL 315
           G+  YTIGQRRGL +A+G+PLFVV ++ +  +VIVGPRE+L    + L+E +WLG  D L
Sbjct: 246 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 305

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            E A  DG +   ++RS+++PVP  +   D  + V F+ +E GVA GQACV Y   ++  
Sbjct: 306 -EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPD 363

Query: 376 RVLGGGIISGSKR 388
           RVLGGG I+G+ R
Sbjct: 364 RVLGGGFIAGTTR 376


>gi|197104258|ref|YP_002129635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phenylobacterium zucineum HLK1]
 gi|196477678|gb|ACG77206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phenylobacterium zucineum HLK1]
          Length = 371

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/372 (53%), Positives = 254/372 (68%), Gaps = 7/372 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A ++KG+CCAGQD++DAR
Sbjct: 4   PAGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAVQKKGACCAGQDIHDAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RF+  VI  FA +Y  GETP+PC+ CN+TVKF DLL V R LG
Sbjct: 64  TAAEGIGIPHYVLDYESRFKQQVIEDFADAYLRGETPIPCIRCNQTVKFRDLLDVARDLG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R     G +G     + R  D  RDQSYFLFATT +QL  LRFPLG M K
Sbjct: 124 AQAMATGHYVRRE--AGAEGPE---LHRAADPARDQSYFLFATTAEQLDYLRFPLGAMPK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR  A E+GL +ADK DSQDICFV +G+Y  ++ R+    A  GDIVHL+G++LGRH 
Sbjct: 179 PAVRAAAAELGLAVADKPDSQDICFVPEGRYTTIIDRLRPQGAEPGDIVHLDGRVLGRHE 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL-F 316
           G+  YTIGQRRGL VA+G+PLFVV +D ++ +V+VGPRE+L    + L+E NW+G G   
Sbjct: 239 GVTRYTIGQRRGLNVAVGDPLFVVRIDADARQVVVGPREALLTRALGLKETNWIGGGPSI 298

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E A   G     ++RS+++PVP  +   D    V F+  E GVA GQACV Y  +S   R
Sbjct: 299 EAACEAGRPVLARVRSTREPVPGRLSLVDGVPGVVFDNPEEGVAPGQACVLYAPES-PTR 357

Query: 377 VLGGGIISGSKR 388
           VLGGG I+G+ R
Sbjct: 358 VLGGGFIAGTVR 369


>gi|295690747|ref|YP_003594440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter segnis ATCC 21756]
 gi|295432650|gb|ADG11822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter segnis ATCC 21756]
          Length = 409

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/374 (55%), Positives = 256/374 (68%), Gaps = 7/374 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A  RKG+CCAGQD+ DAR
Sbjct: 35  PEGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 95  MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++  +  G +  + R   R  D  +DQSYFLFATT++QL  LRFPLG M K
Sbjct: 155 AEAMATGHYVQRGMPAGTNRPQLR---RAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 211

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A  +GL IADK DSQDICFV +GKY  V+ RI    A  GDIVHL+G++LGRH 
Sbjct: 212 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDIVHLDGRVLGRHE 271

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG--DGL 315
           G+  YTIGQRRGL VA+G+PLFVV +D +  +VIVGPRE+L    + L+E NWLG  D L
Sbjct: 272 GVTRYTIGQRRGLNVAVGDPLFVVRIDADKRQVIVGPREALLTAALTLKETNWLGGQDDL 331

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              A  +G     ++RS+++PV   +   D  V V F+ SE GVA GQACV Y     E 
Sbjct: 332 AA-AADEGQPVLARVRSTREPVAGRLSLLDGEVAVTFDGSEEGVAPGQACVLYDPADPE- 389

Query: 376 RVLGGGIISGSKRS 389
           RVLGGG I+ + R+
Sbjct: 390 RVLGGGFIARAVRA 403


>gi|254419496|ref|ZP_05033220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas sp. BAL3]
 gi|196185673|gb|EDX80649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas sp. BAL3]
          Length = 400

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/367 (55%), Positives = 251/367 (68%), Gaps = 7/367 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+   A K+KG+CCAGQD++DAR
Sbjct: 32  PVGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 91

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RF++AVI  FA SY  G+TP+PC+ CN+TVKF DLL V R LG
Sbjct: 92  LAAEMIGIPHYVLDYESRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 151

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY+R R  VG+    R  M + +D  RDQSYFLFATTQ QL  LRFPL D++K
Sbjct: 152 AEAMATGHYVR-RAAVGN----RSQMRKAIDHSRDQSYFLFATTQDQLDYLRFPLADLEK 206

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E+GL IA K DSQDICFV  G Y  ++ R+       G+IVH++G++LG H 
Sbjct: 207 PQVRGVAAELGLKIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGTHA 266

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           GI +YTIGQRRGL VA+GEPLFVV L+  + RVIVGPRE+L    + L E NWLGD    
Sbjct: 267 GITDYTIGQRRGLNVAVGEPLFVVKLEPETRRVIVGPREALLTASLTLEETNWLGDEATI 326

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +A         ++RS++ P P  +   DD V V F++ E GVA GQAC  Y  D  + R
Sbjct: 327 MEAAQANLPVLARVRSTRPPSPARLILIDDQVCVVFDEGEEGVAPGQACALYDPDDPD-R 385

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 386 VLGGGFI 392


>gi|84686908|ref|ZP_01014792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665105|gb|EAQ11585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2654]
          Length = 381

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/386 (52%), Positives = 259/386 (67%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +    R+NSL   K   + RVVVAMSGGVDSSVVAA LKR+GYDVIGVTLQLY+   A
Sbjct: 1   MSLDTEIRVNSLGFAKPESETRVVVAMSGGVDSSVVAAKLKREGYDVIGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFREAVIEEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL+  + L AD +ATGHYI+   + GD G     + R  D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLATAKDLDADCMATGHYIQR--FDGDAGPE---LHRAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +K K+  R LARE GL++ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLSFLRFPLGHLKTKDETRALAREFGLEVADKPDSQDICFVPDGNYAGVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LGRH+G+I+YTIGQRRGLG+  + +PL+VV LD  + +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLGRHDGVIHYTIGQRRGLGIGGLSDPLYVVRLDTETRQVVVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F       +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFTSQ--GEWHLSVKVRSTRPPREAVIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  DS+  R+ GGG I
Sbjct: 354 GVSPGQACVFYAPDSS--RIFGGGWI 377


>gi|167644970|ref|YP_001682633.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter sp. K31]
 gi|205811623|sp|B0SWD8|MNMA_CAUSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167347400|gb|ABZ70135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter sp. K31]
          Length = 409

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/377 (52%), Positives = 253/377 (67%), Gaps = 9/377 (2%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+V AMSGGVDS+V AALL + GYDV+GVTLQLY+   A  +KG+CCAGQD+ DAR
Sbjct: 35  PVGTRIVAAMSGGVDSTVTAALLAKAGYDVVGVTLQLYDHGAAITKKGACCAGQDILDAR 94

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RF+  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 95  MAAERIGIPHYVLDYESRFKEQVIEEFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++     G +  + R   R  D  +DQSYFLFATT +QL  LRFPLG M K
Sbjct: 155 AEAMATGHYVQRSFAAGANRPQLR---RAADPAKDQSYFLFATTAEQLDFLRFPLGGMDK 211

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A E+GL IADK DSQDICFV +GKY  V+ RI    AL GD+VH++G++LGRH 
Sbjct: 212 PTVRLVAAELGLAIADKPDSQDICFVPEGKYTTVIDRIRPHGALPGDLVHMDGRVLGRHE 271

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G+  YTIGQRRGL +A+G+PLFVV +D +  +VIVGPRE+L    + L+E NWLG +   
Sbjct: 272 GVTRYTIGQRRGLNIAVGDPLFVVKIDADKRQVIVGPREALLTQALSLKEGNWLGVEDSL 331

Query: 317 EDAVVDGFKCFVKIRSSQDPVP----VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           E A   G     ++RS+++PVP    +    N     + F+  E GVA GQACV Y    
Sbjct: 332 EAAAAAGAPVLARVRSTREPVPGRLTLVPGPNGGEPRLVFDGLEEGVAPGQACVLYDPAD 391

Query: 373 NEARVLGGGIISGSKRS 389
            E RVLGGG I  ++R+
Sbjct: 392 PE-RVLGGGFIVATERA 407


>gi|302382556|ref|YP_003818379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302193184|gb|ADL00756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 407

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/371 (53%), Positives = 253/371 (68%), Gaps = 8/371 (2%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+   A K+KG+CCAGQD++DAR
Sbjct: 37  PVGSRVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 96

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + + + HYV DYE RFR+AVI  FA SY  G+TP+PC+ CN+TVKF DLL V R LG
Sbjct: 97  LAAEMLGIPHYVLDYESRFRDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 156

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+     V  DG+ +  M + +D  RDQSYFLFATT+ QL  LRFPL  ++K
Sbjct: 157 AAAMATGHYVGR--AVAADGRAQ--MRKAIDPSRDQSYFLFATTRDQLDYLRFPLAGLEK 212

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A E+GL IA K DSQDICFV  G Y  ++ R+       G+IVH++G++LG H 
Sbjct: 213 PAVRGVAAELGLRIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGHHA 272

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           GI +YTIGQRRGL VA+GEPLFV  LD ++ RVIVGPRE+L    + L E NWLGD    
Sbjct: 273 GITDYTIGQRRGLNVAVGEPLFVTRLDPDTRRVIVGPREALLTASLTLDETNWLGDEASI 332

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC-VFYTSDSNEA 375
           E A         ++RS++ P P  +   D G+ V FE  E GVA GQAC ++Y SD +  
Sbjct: 333 EAAAAANTPVLARVRSTRPPSPARLTLADSGISVVFETGEEGVAPGQACALYYPSDPD-- 390

Query: 376 RVLGGGIISGS 386
           R+LGGG I+ +
Sbjct: 391 RLLGGGFIAST 401


>gi|262276991|ref|ZP_06054784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HIMB114]
 gi|262224094|gb|EEY74553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HIMB114]
          Length = 377

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/388 (50%), Positives = 263/388 (67%), Gaps = 13/388 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           + +++ T  N L  DK+    +VVVAMSGGVDSSVVAALLK+DGYDVIG+TLQL++  K 
Sbjct: 3   LAITDITEKNILGFDKDKSQTKVVVAMSGGVDSSVVAALLKKDGYDVIGITLQLFDYGKI 62

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K KG+CCAG+D+YDA++VCD + + H VF+YE  F+  VI  FA SY  GETP+PCVDC
Sbjct: 63  GKTKGTCCAGKDIYDAKKVCDQLEIKHEVFNYESIFKEEVIEKFADSYIKGETPIPCVDC 122

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF DL    + L AD LATGHY++ R++         +M RP DL RDQSYFLF T
Sbjct: 123 NQTVKFRDLFKSAKNLDADALATGHYVK-RIF-----NHSAMMYRPEDLNRDQSYFLFNT 176

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           TQ+QL  LRFPL  + K   RD+AR++ L +A+K DSQDICFV  G Y  +V+++     
Sbjct: 177 TQEQLDYLRFPLASLPKTKTRDIARDLKLQVANKPDSQDICFVPNGNYKTIVEKLRPESF 236

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           +EG+IV   G+ILG+HNGI N+TIGQR+G+ V+  +P FV+ +D   ++V++G RE L V
Sbjct: 237 VEGEIVDTKGKILGKHNGIANFTIGQRKGIKVSSIDPFFVIRIDPKKNQVVIGSREELSV 296

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             IYL++IN+L D   ++ +   F  FVK+RS+ + +   V  +D+G  V     E GV+
Sbjct: 297 QTIYLKDINYLCD---KEQLNGDF--FVKVRSTGNLLECNV--SDNGHKVTLLSGETGVS 349

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKR 388
            GQACVFY  D    RV GGG I  +++
Sbjct: 350 PGQACVFYKKDEFGMRVYGGGWIDRTEK 377


>gi|114766932|ref|ZP_01445852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelagibaca bermudensis HTCC2601]
 gi|114540839|gb|EAU43901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. HTCC2601]
          Length = 380

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/382 (52%), Positives = 258/382 (67%), Gaps = 12/382 (3%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +A  LNSL L K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A  +K
Sbjct: 4   DAPTLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY  G TP+PC+ CN  V
Sbjct: 64  GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL   + L AD +ATGHYI+    VGD G     +    D  RDQSYFLF+TT +Q
Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQR--MVGDQGAE---LHSAADANRDQSYFLFSTTPEQ 178

Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           L  LRFPLG +K K   R+LA + GL +ADK DSQDICFV  G Y  V++++  G A  G
Sbjct: 179 LDYLRFPLGHLKSKAETRELAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD ++ +VIVGP+E L   +
Sbjct: 239 EIVHADGRVLGEHRGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDNKQVIVGPKEMLATRK 298

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           + +REINWLGD  F     + +   VK+RS++ P    V+  ++    V+   +E GV+ 
Sbjct: 299 VPVREINWLGDAPFTSR--EEWHLSVKVRSTRPPREAIVRPISETEAEVELVVAEEGVSP 356

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACVFY  DS+  R+ GGG I
Sbjct: 357 GQACVFYDPDSS--RIFGGGWI 376


>gi|304321619|ref|YP_003855262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvularcula bermudensis HTCC2503]
 gi|303300521|gb|ADM10120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvularcula bermudensis HTCC2503]
          Length = 409

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/385 (51%), Positives = 261/385 (67%), Gaps = 14/385 (3%)

Query: 1   MVVSEATRLNSLDLDKN-PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           M+ +  T L +  LD   PK  R+VVAMSGGVDSSV AAL+ R GYDV+G+TLQLY+   
Sbjct: 4   MIKTPLTDLTASQLDLGLPKGARIVVAMSGGVDSSVTAALVHRAGYDVVGITLQLYDHGV 63

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A  +KG+CCAGQD+ DAR V D + + HYV DYE+RF ++V+  FA +Y AG TP+PCV 
Sbjct: 64  AIAKKGACCAGQDIADARAVADRLGIPHYVLDYEDRFGDSVMQDFADTYLAGATPIPCVR 123

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CN+ VKF DLL   R LGA  +ATGHYIR       D  R   + R  D  +DQSYFLFA
Sbjct: 124 CNQRVKFRDLLHTARDLGAAAMATGHYIRR-----TDDDRGLALRRAEDAGKDQSYFLFA 178

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           TT++QL  LRFPLGD+ KE+ R +A E+GL +ADK DSQDICFV +G+Y  VV+R+  G 
Sbjct: 179 TTREQLSFLRFPLGDLPKETTRQIAAELGLGVADKPDSQDICFVPEGRYASVVERLRPGA 238

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G IV LNGQ+LG+H GII+YT+GQRRGL +  + EPL+V+ LD + + V+VGP+ +L
Sbjct: 239 ATPGAIVDLNGQVLGQHQGIIHYTVGQRRGLALGGLVEPLYVIRLDADRAEVVVGPKAAL 298

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358
            V  I L E+NWLG    E+A     +  VK+RS++ PV   ++R+     V F++ + G
Sbjct: 299 GVRAIRLDEMNWLGT---EEAAT--HRVAVKVRSTKPPVLAVLKRSGAEAEVMFDEPQEG 353

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           VA GQA VFY    ++  VLGGG I
Sbjct: 354 VAPGQAGVFYALKDDQ--VLGGGWI 376


>gi|297181386|gb|ADI17576.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase
           domain-protein [uncultured alpha proteobacterium
           HF0130_06E21]
          Length = 454

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/381 (55%), Positives = 256/381 (67%), Gaps = 17/381 (4%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSL  D+ P + RVVVAMSGGVDSSV AALL   GYDV+G+TLQLY+   A+ R  +CC
Sbjct: 75  MNSLGFDRPPAETRVVVAMSGGVDSSVTAALLHEQGYDVVGITLQLYDHGAATARFKACC 134

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+YDA RV D I   HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF D
Sbjct: 135 AGQDIYDAYRVADMIGFPHYVLDYESRFREDVIENFADAYVRGETPIPCVTCNQTVKFRD 194

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L++  R LGAD LATGHYIR     G  G     + R +D  RDQSYFLFATT  QL  L
Sbjct: 195 LVATARDLGADALATGHYIRRE--AGPGGAE---LHRAVDASRDQSYFLFATTHDQLDFL 249

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K+ VR+ AR +GL IA+K DSQDICFV  GKY  +V+++  G A  GDIVHL
Sbjct: 250 RFPLGDMPKDQVREHARRLGLAIAEKPDSQDICFVPDGKYAQIVEKLRPGAAEPGDIVHL 309

Query: 249 NGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           NG +LG H GI+N+TIGQRRG+G+     A  + L+VV LD  + RVIVGPRE+L   R+
Sbjct: 310 NGTVLGEHEGILNFTIGQRRGIGIGGRKDADADALYVVRLDPETRRVIVGPREALATSRV 369

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
            +  +NWLG+G  +    +G +  VKIRS+ +PVP  V     G   V+    E GV+ G
Sbjct: 370 PVNGLNWLGEG--DAPPAEGVEVSVKIRSTMEPVPGRVAGISCGAAMVELAMPEFGVSPG 427

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA VFY    + ARVLGGG I
Sbjct: 428 QAAVFY----DGARVLGGGWI 444


>gi|254462137|ref|ZP_05075553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678726|gb|EDZ43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 381

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/386 (51%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  AT+LNSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDTATKLNSLGFAKAPSDTRVVVAMSGGVDSSVVAAQLASEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G  +  +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GPEKAELHAAADGARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            Q+QL  LRFPLG +  K++ R+LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 KQEQLDFLRFPLGHLPSKDATRELAAKFGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  GDIV   G +LG+H G+I+YTIGQRRGLG+  +  PL+VV LD +   VIVGP+E L
Sbjct: 236 AEAGDIVDTEGNVLGKHEGVIHYTIGQRRGLGIGGLETPLYVVRLDVDLKHVIVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD        + +   V++RS++ P P  ++  +D    V+    E 
Sbjct: 296 STRTIPVREINWLGDAPLSSK--EEWHVLVRVRSTRPPRPAIIRPISDVEATVELLTPED 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY +DS   R+ GGG I
Sbjct: 354 GVSPGQACVFYDTDST--RIFGGGWI 377


>gi|149915230|ref|ZP_01903758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. AzwK-3b]
 gi|149810951|gb|EDM70790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. AzwK-3b]
          Length = 379

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/378 (52%), Positives = 255/378 (67%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGIDIHDARRVAEDMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ ++  G  G    + C   D  RDQSYFLF+TT +QL  L
Sbjct: 127 LLETARDLDADCMATGHYIQRKM--GAHGP--ELHCA-ADAARDQSYFLFSTTPEQLDFL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K + R+LA   GL +ADK DSQDICFV  G Y  V++++  G A  G+I H
Sbjct: 182 RFPLGHLPSKHATRELAARYGLKVADKPDSQDICFVPDGNYAAVIEKLRPGAAEPGEIAH 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++G+ILG H G+I+YTIGQRRGLG+  + EPL+VV LD ++ RVIVGP+E L    + +R
Sbjct: 242 VDGRILGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDAQRVIVGPKELLATRLVPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F+      +   VK+RS++ P    ++   D G  V+    E GV+ GQAC
Sbjct: 302 EINWLGDAPFDSR--PEWHLSVKLRSTRPPQEAILRPLPDGGAEVELLSPEEGVSPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  ++ ++R+LGGG I
Sbjct: 360 VFY--ETGDSRILGGGWI 375


>gi|260426477|ref|ZP_05780456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citreicella sp. SE45]
 gi|260420969|gb|EEX14220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citreicella sp. SE45]
          Length = 380

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/382 (51%), Positives = 256/382 (67%), Gaps = 12/382 (3%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +A +LNSL L K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A  +K
Sbjct: 4   DAPKLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY  G TP+PC+ CN  V
Sbjct: 64  GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL   + L AD +ATGHYI+    VGD G     +    D  RDQSYFLF+TT +Q
Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQR--MVGDRGPE---LHSAADANRDQSYFLFSTTPEQ 178

Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           L  LRFPLG +K K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G
Sbjct: 179 LSFLRFPLGHLKSKAETRALAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +IVH++G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD +  +VIVGP+E L    
Sbjct: 239 EIVHVDGRVLGEHRGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKQVIVGPKELLATRT 298

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           + +REINWLGD  F       +   VK+RS++ P    ++  ++    V+   +E GV+ 
Sbjct: 299 VPVREINWLGDEPFTSR--KEWHVSVKVRSTRPPREAVIRPISETEAEVELVVAEEGVSP 356

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACVFY  D+  +R+ GGG I
Sbjct: 357 GQACVFY--DTESSRIFGGGWI 376


>gi|86138410|ref|ZP_01056984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. MED193]
 gi|85824935|gb|EAQ45136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. MED193]
          Length = 381

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDVIGVTLQLY+   A
Sbjct: 1   MALDTDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVIGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++  GD+G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM--GDNGAE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYTSVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +VIVGP+E L
Sbjct: 236 AEPGEIVHADGRVLGTHTGVIHYTIGQRRGLGIGGLTEPLYVVRLDVDKKQVIVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F+      +   VK+RS++ P    ++  +     V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFDSR--QEWNVMVKVRSTRPPREAIIRPLSATTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY SDS+  R+ GGG I
Sbjct: 354 GVSPGQACVFYDSDSS--RIFGGGWI 377


>gi|85702766|ref|ZP_01033870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. 217]
 gi|85671694|gb|EAQ26551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. 217]
          Length = 383

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDTNKPLNSLGFPKPPAETRVVVAMSGGVDSSVVAAHLASEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ +L  G  G    + C   D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKL--GSQGP--ELHCA-SDSARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K + R+LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKAATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG+H G+I+YTIGQRRGLG+  + EPL+VV LD ++ RVIVGP+E L
Sbjct: 236 AEPGEIVHADGRVLGQHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDARRVIVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + LREINWLGD          ++  VK+RS++ P    ++  +     V+    E 
Sbjct: 296 STRTVPLREINWLGDVPMTSQTE--WQVSVKVRSTRPPREAVLRPISATEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY +D +  RVLGGG I
Sbjct: 354 GVSPGQACVFYETDGS--RVLGGGWI 377


>gi|99081242|ref|YP_613396.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria sp. TM1040]
 gi|123077645|sp|Q1GGT2|MNMA_SILST RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|99037522|gb|ABF64134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. TM1040]
          Length = 381

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/386 (50%), Positives = 257/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     +NSL   K+P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G+ G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GEHGPE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIQKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G IVH +G++LG HNG+I+YTIGQRRGLG+  + EPL+VV LD +  +VIVGP+E L
Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDQKQVIVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              R+ +REINWLGD  F     D +   VK+RS++ P    ++  ++    V+   +E 
Sbjct: 296 ATRRVPVREINWLGDAPFTSR--DEWHLSVKVRSTRPPRDAIIRPISETEAEVELFSAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  D N +R+ GGG I
Sbjct: 354 GISPGQACVFY--DPNGSRIYGGGWI 377


>gi|84516171|ref|ZP_01003531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Loktanella vestfoldensis SKA53]
 gi|84509867|gb|EAQ06324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Loktanella vestfoldensis SKA53]
          Length = 379

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/378 (51%), Positives = 254/378 (67%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   INSLGFAKAPADTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AV+  FA SY  G TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ ++     G +   +    D  +DQSYFLF+TTQ QL  L
Sbjct: 127 LLQTARDLDADCMATGHYIQRKM-----GVQGAELHSAADAAKDQSYFLFSTTQDQLDYL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG  K K+  R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G IV 
Sbjct: 182 RFPLGHHKSKDETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAASPGTIVD 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           +NGQ+LG+HNG+I+YT+GQRRGLG+  + +PL+VV LD +  +VIVGP++ L   R+ LR
Sbjct: 242 INGQVLGQHNGVIHYTVGQRRGLGIGGLADPLYVVRLDVDKKQVIVGPKDMLATRRVPLR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINW+G G   D  +   +  V++RS++ P    ++  +D    V+   +E GV+ GQAC
Sbjct: 302 EINWIGGGKLTD--IAERQIAVRVRSTRPPTDAILRPISDTEAEVELLVAEQGVSPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY +DS   RVLGGG I
Sbjct: 360 VFYDTDST--RVLGGGWI 375


>gi|167042070|gb|ABZ06805.1| putative tRNA methyl transferase [uncultured marine microorganism
           HF4000_141I21]
          Length = 382

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/379 (48%), Positives = 255/379 (67%), Gaps = 10/379 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           ++ + NSL   K PKD +VVVAMSGGVDSS VA L+K+DGYDVIG+TL+LY+  K+SK  
Sbjct: 4   KSEKFNSLGFLKRPKDTKVVVAMSGGVDSSTVAGLMKKDGYDVIGITLKLYDDAKSSKES 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             CCAGQD+ DA+RV   +N+ H +  Y+++F+  VI  F  SY AGETP+PCV CN+TV
Sbjct: 64  RQCCAGQDILDAKRVSQQLNIDHKILYYQKKFKKDVIDSFIDSYVAGETPIPCVQCNQTV 123

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DL S   ++ AD L TGHY+     +  +G     M R +DL RDQSYFLF+TTQ+Q
Sbjct: 124 KFRDLYSYALEMKADALITGHYVNR---IKKNGNAE--MYRAIDLTRDQSYFLFSTTQEQ 178

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLG M+K+  R +A ++ L++ADK DSQDICFV  G Y  ++K+       +G+
Sbjct: 179 LNFLRFPLGQMQKKETRKIASKLKLNVADKPDSQDICFVPNGNYASIIKKYRPESFQKGN 238

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           I+ + G I+G+H+GIIN+TIGQR+G+G+A  EPL+V+ ++  ++ VIVG R +L + +IY
Sbjct: 239 ILDIVGNIVGKHDGIINFTIGQRKGIGIAYKEPLYVININAKTNEVIVGNRVALAIKKIY 298

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           L+ +N     L  DA       F+K+RS+   V   V  ND G  V+ E+ E G++ GQA
Sbjct: 299 LKNLN-----LLSDAEEYNNNLFIKVRSTGRLVKAKVNLNDTGAEVNLEELETGISPGQA 353

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY+ +    +VLGGG I
Sbjct: 354 CVFYSKNQFGDKVLGGGWI 372


>gi|254510076|ref|ZP_05122143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium KLH11]
 gi|221533787|gb|EEE36775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium KLH11]
          Length = 381

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/386 (50%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDAKTPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++  G +G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM--GPNGSE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++L +HNG+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLAQHNGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDKKQVVVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD  F     D +   VK+RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRTVPVREINWLGDAPFSSQ--DEWHVSVKVRSTRPPREAIIRPLSDTTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  ++  +R+ GGG I
Sbjct: 354 GISPGQACVFY--ETGGSRIFGGGWI 377


>gi|255263925|ref|ZP_05343267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thalassiobium sp. R2A62]
 gi|255106260|gb|EET48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thalassiobium sp. R2A62]
          Length = 378

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/378 (52%), Positives = 251/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  ++G+CC
Sbjct: 7   LNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKQGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARRV   +   HYV DYE  F+ AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGLDIHDARRVAQEMGFPHYVLDYENTFKEAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++  GD G    + C   D  RDQSYFLF+TT  QL  L
Sbjct: 127 LLETAKDLDADCMATGHYIQRKM--GDHGA--ELHCA-TDANRDQSYFLFSTTLDQLDYL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A  GDIV 
Sbjct: 182 RFPLGHLPSKNETRALAEKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGDIVD 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           +NG +LG HNG+I+YT+GQRRGLG+  + +PL+VV LD ++ +VIVGP++ L    I +R
Sbjct: 242 INGTVLGTHNGVIHYTVGQRRGLGIGGLADPLYVVKLDVDAKQVIVGPKDMLSTRTIPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F+ +V       VK+RS++ P    V+  +     V+    E GV+ GQAC
Sbjct: 302 EINWLGDDAFDASVERNI--MVKVRSTRPPREAIVRPISATEATVELLTPEEGVSPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY+ DS   R+LGGG I
Sbjct: 360 VFYSPDS--PRILGGGWI 375


>gi|84500833|ref|ZP_00999068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola batsensis HTCC2597]
 gi|84390900|gb|EAQ03318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola batsensis HTCC2597]
          Length = 382

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/386 (50%), Positives = 255/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   + LNSL   K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDRTSDLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLDADCMATGHYIQRKM-----GAAGAELHSAADAARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLSFLRFPLGHLASKAETRALAAKYGLPVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV  +G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD ++ RV+VGP+E L
Sbjct: 236 AEPGEIVDTSGRVLGHHEGVIHYTIGQRRGLGIGGLSDPLYVVRLDVDARRVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              ++ +REINWLG+G F D      +  VK+RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRQVPVREINWLGEGAFTDQPER--EISVKVRSTRPPREAILRPVSDTEAVVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++   R+LGGG I
Sbjct: 354 GVSPGQACVFY--ETGGTRILGGGWI 377


>gi|163794310|ref|ZP_02188282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium BAL199]
 gi|159180478|gb|EDP64999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium BAL199]
          Length = 394

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/392 (53%), Positives = 263/392 (67%), Gaps = 23/392 (5%)

Query: 7   TRLNSLDLD-KNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           T +  LDL    P+  R VVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A  RK
Sbjct: 3   TTVPDLDLGLPGPRSARRVVVAMSGGVDSSVTAALLKEAGYDVVGITLQLYDHGAAVARK 62

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAG D++DAR V + + + HYV DYE RFR +VI  FA SY  GETP+PCV CN+TV
Sbjct: 63  GACCAGSDIHDARTVAERLGIPHYVLDYESRFRESVIDDFADSYLRGETPIPCVRCNQTV 122

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL+  R LGA+ LATGHY+R  L  G DG     + R +D  +DQSYFLFATT +Q
Sbjct: 123 KFRDLLTTARDLGAEALATGHYVRRVL--GPDGPE---LHRAVDPGKDQSYFLFATTPEQ 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLG M KE+ RD AR +GL + DK DSQDICFV  G Y +VVK++  G A  GD
Sbjct: 178 LAFLRFPLGSMSKEATRDEARRLGLVVQDKPDSQDICFVPNGNYAEVVKKLRPGAADPGD 237

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGL---------GVAMGEPLFVVYLDKNSSRVIVGPR 295
           IVHL+G +LG+H+G+I+YT+GQRRG+         G A  +PL+VV LD ++ RVIVGPR
Sbjct: 238 IVHLDGTVLGQHDGVIHYTVGQRRGIGVGGRRGAEGEAATDPLYVVRLDPDARRVIVGPR 297

Query: 296 ESLEVHRIYLREINWLG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFE 353
           E+L    +   E+NWLG DG   ++   G +  VK+RS Q PV   V  +   G  V  +
Sbjct: 298 EALAAETVLAGEVNWLGADGGVPES---GARAQVKLRSVQAPVTATVYGDAAGGARVVLD 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + + GV++GQA VFY  D   ARVLGGG I G
Sbjct: 355 QPQYGVSAGQAAVFYGEDG--ARVLGGGWIRG 384


>gi|259416977|ref|ZP_05740897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter sp. TrichCH4B]
 gi|259348416|gb|EEW60193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter sp. TrichCH4B]
          Length = 381

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/386 (50%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     +NSL   K+P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLAEQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G+ G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GEHGPE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G IVH +G++LG HNG+I+YTIGQRRGLG+  + EPL+VV LD +  +VIVGP++ L
Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKKVIVGPKDML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              R+ +REINWLGD  F       +   VK+RS++ P    ++  +D    V+   +E 
Sbjct: 296 ATRRVPVREINWLGDEPFTSRTE--WHLSVKVRSTRPPRDAIIRPISDTEAEVELFSAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  D N +R+ GGG I
Sbjct: 354 GISPGQACVFY--DPNGSRIFGGGWI 377


>gi|260576792|ref|ZP_05844777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sp. SW2]
 gi|259021044|gb|EEW24355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sp. SW2]
          Length = 379

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L K P++ RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGLAKPPQETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEAMGFPHYVLDYENTFRAAVIDEFADAYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+L AD +ATGHYI+ +L     G     +    D  RDQSYFLF+TT +QL  L
Sbjct: 127 LLATARELDADCMATGHYIQRKL-----GLHGPELHSATDPARDQSYFLFSTTAEQLDYL 181

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA   GL +ADK DSQDICFV  G Y  V++++  G A  G IV 
Sbjct: 182 RFPLGHLASKAETRALAARYGLAVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGLIVG 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           L+G  LG H G+I+YTIGQRRGLG+  + +PL+V+ LD  + +V+VGP+ +L   R+ LR
Sbjct: 242 LDGTPLGEHRGVIHYTIGQRRGLGIGGVADPLYVLRLDPETRQVVVGPKAALSTRRVPLR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F+      +   VK+RS++ P P  V+  +     V+    E G+++GQAC
Sbjct: 302 EINWLGDAAFDSQ--PEWLLNVKVRSTRPPRPALVRPLSATEAEVELLAPEDGISAGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  + +  RVLGGG I
Sbjct: 360 VFYAPEGS--RVLGGGWI 375


>gi|149203838|ref|ZP_01880807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. TM1035]
 gi|149142955|gb|EDM30997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. TM1035]
          Length = 383

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K+P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 9   LNSLGFPKSPAETRVVVAMSGGVDSSVVAAHLAAEGYDVVGVTLQLYDHGAALAKKGACC 68

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 69  AGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKD 128

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ ++     G +   +    D  RDQSYFLF+TT +QL  L
Sbjct: 129 LLETARDLEADCMATGHYIQRKM-----GVQGPELHSATDSARDQSYFLFSTTPEQLEFL 183

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K++ R+LA + GL +ADK DSQDICFV  G Y  V++++  G A  G+IVH
Sbjct: 184 RFPLGHLPSKQATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIVH 243

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            +G+ILG H G+I+YTIGQRRGLG+  + EPL+VV LD ++ RVIVGP++ L    + LR
Sbjct: 244 ADGRILGTHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDTRRVIVGPKDMLSTRTVPLR 303

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD          +   VK+RS++ P    ++  +     V+    E GV+ GQAC
Sbjct: 304 EINWLGDAPLTSQA--EWHISVKVRSTRPPREAVLRPISATEATVELLTPEEGVSPGQAC 361

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  ++   RVLGGG I
Sbjct: 362 VFY--ETTGTRVLGGGWI 377


>gi|126729666|ref|ZP_01745479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sagittula stellata E-37]
 gi|126709785|gb|EBA08838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sagittula stellata E-37]
          Length = 379

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 254/378 (67%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L K P + RVVVAMSGGVDSSVVAA+LK +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLKEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARRV + +   HYV DYE  F+ AVI  FA SY  G TP+PC+ CN  VKF D
Sbjct: 67  AGIDIHDARRVAEDMGFPHYVLDYENIFQEAVIEEFADSYLGGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ +      G R   +    D  RDQSYFLF+TT +QL  L
Sbjct: 127 LLETAKDLEADCMATGHYIQRKT-----GARGPELHSAADAARDQSYFLFSTTPEQLDFL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K + R+LA   GL +ADK DSQDICFV  G Y  V++++  G A  G+IVH
Sbjct: 182 RFPLGHLPSKAATRELAARYGLAVADKPDSQDICFVPDGNYAKVIEKLRPGAAEPGEIVH 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++G++LG+H G+I+YTIGQRRGLG+  + EPL+VV LD  + +V+VGP++ L    I +R
Sbjct: 242 IDGRVLGQHRGVIHYTIGQRRGLGIGGLSEPLYVVRLDVETRQVVVGPKDLLATRTIPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F       ++  VK+RS++ P    ++  ++    V+   +E GV+ GQAC
Sbjct: 302 EINWLGDAPFTSQAE--WQLDVKVRSTRPPREAIIRPLSETTGEVELVVAEEGVSPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D++  R+ GGG I
Sbjct: 360 VFYAPDNS--RIFGGGWI 375


>gi|114768812|ref|ZP_01446438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HTCC2255]
 gi|114549729|gb|EAU52610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HTCC2255]
          Length = 382

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/388 (48%), Positives = 260/388 (67%), Gaps = 11/388 (2%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +++     LNS+   K+PKD RV+VAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 4   IMIQNTKALNSMGFAKDPKDTRVLVAMSGGVDSSVVAAMLSEEGYDVVGVTLQLYDHGAA 63

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG+D+ DARRV + +   HYV DYE +F+ +VI  FA +Y AG TP+PC+ C
Sbjct: 64  LAKKGACCAGRDIQDARRVAEEMGFPHYVLDYENKFKESVIDEFADAYLAGATPVPCIRC 123

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+  +   ++GK    + +  D +RDQSYFLF+T
Sbjct: 124 NERVKFRDLLETAKDLDADCMATGHYIQRFV---ENGKAE--LHKAADQDRDQSYFLFST 178

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            Q+QL  LRFPLG +K K+  R+LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 179 KQEQLDYLRFPLGHLKSKKDTRELAHKYGLPVADKPDSQDICFVPNGSYAAVIEKLRPEA 238

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
           A  G IV  +G +LG H GIINYT+GQRRGLG+  G+PL+V+ LD +S  VIVGP+E+L 
Sbjct: 239 ANPGQIVSQDGAVLGEHKGIINYTVGQRRGLGIGGGDPLYVIKLDADSREVIVGPKEALA 298

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              + ++EINWLG+  F D+        V++RS++ P    ++  ++    V+   +E G
Sbjct: 299 TRTVLIKEINWLGEDNFLDSKERTLA--VRVRSTRSPKEAIIKPISETTATVELVMAEEG 356

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGS 386
           +A GQACVFY  D    R+ GGG I+ +
Sbjct: 357 IAPGQACVFY--DIEGTRIYGGGWITNN 382


>gi|83951896|ref|ZP_00960628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius nubinhibens ISM]
 gi|83836902|gb|EAP76199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius nubinhibens ISM]
          Length = 380

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/378 (51%), Positives = 256/378 (67%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGLPKPPSETRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARRV + +   HYV DYE  F++AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGIDIHDARRVAEEMGFPHYVLDYENIFQDAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ +   G +G    + C   D  RDQSYFLF+TT +QL  L
Sbjct: 127 LLQTARDLDADCMATGHYIQRKQ--GQNGP--ELHCA-TDANRDQSYFLFSTTPEQLEFL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K++ R+LA + GL +ADK DSQDICFV  G Y  V++++  G A  G+IVH
Sbjct: 182 RFPLGHLPSKDATRELAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGEIVH 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            +G++LG HNG+I+YTIGQRRGLG+  + +PL+VV LD +   V+VGP+E L    + +R
Sbjct: 242 ADGRVLGTHNGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKHVVVGPKEMLSTRNVPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F+      ++  VK+RS++ P    ++  +     V+    E G++ GQAC
Sbjct: 302 EINWLGDEPFDSRAE--WQVSVKVRSTRPPREAVIRPLSPTTAEVELLSPEDGISPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY ++   +R+LGGG I
Sbjct: 360 VFYETEG--SRILGGGWI 375


>gi|110679829|ref|YP_682836.1| tRNA-specific 2-thiouridylase MnmA [Roseobacter denitrificans OCh
           114]
 gi|123065538|sp|Q166E3|MNMA_ROSDO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109455945|gb|ABG32150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter denitrificans OCh 114]
          Length = 380

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/386 (48%), Positives = 251/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  +  LNSL   K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDPSPTLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ +      G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRK-----SGPYGAELHSAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  KE  R LA + GL +A+K DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPDGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  GDIV  +G++L RH+G++NYTIGQRRGLG+  +  PL+V+ LD  + +V+VGP+  L
Sbjct: 236 AAPGDIVDTDGRVLARHDGVVNYTIGQRRGLGIGGLATPLYVIKLDAEARQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD  F+    D +   VK+RS++ P    ++  +D    V+    E 
Sbjct: 296 STRTVPVREINWLGDEPFQSR--DAWHLAVKVRSTRPPTDAIIRPISDTEATVELTSPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY +DS+  R+ GGG I
Sbjct: 354 GISPGQACVFYDTDSS--RIYGGGWI 377


>gi|254451424|ref|ZP_05064861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 238]
 gi|198265830|gb|EDY90100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 238]
          Length = 379

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/378 (52%), Positives = 252/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++     G R   +    D  RDQSYFLF+T  +QL  L
Sbjct: 127 LLETAKDLDADCMATGHYIQRKM-----GARGAELHCAEDANRDQSYFLFSTKPEQLDYL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K++ R+LAR+ GL +ADK DSQDICFV  G Y  V++++  G A  GDIV 
Sbjct: 182 RFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGDIVD 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            +G +L +H G+I+YTIGQRRGLG+  + +PL+VV LD +   VIVGP+E L    + +R
Sbjct: 242 TDGSVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKEMLTTRTVPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F DAV +     VKIRS++ P+   V+  +     ++    E GVA GQAC
Sbjct: 302 EINWLGDDAF-DAVAE-RHISVKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY +DS+  R+ GGG I
Sbjct: 360 VFYDNDSS--RIFGGGWI 375


>gi|159044055|ref|YP_001532849.1| tRNA-specific 2-thiouridylase MnmA [Dinoroseobacter shibae DFL 12]
 gi|205816871|sp|A8LK49|MNMA_DINSH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157911815|gb|ABV93248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 384

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 246/378 (65%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 12  LNSLGFAKPPSETRVVVAMSGGVDSSVVAAELACEGYDVVGVTLQLYDHGAALAKKGACC 71

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AVI  FA SY  G TP+PC+ CN  VKF D
Sbjct: 72  AGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLGGATPVPCIRCNERVKFKD 131

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ ++     G  +  +    D  RDQSYFLF+TTQ+QL  L
Sbjct: 132 LLETARDLEADCMATGHYIQRKM-----GPAKAELHSAADANRDQSYFLFSTTQEQLDYL 186

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G    G+IV 
Sbjct: 187 RFPLGHLASKAETRALAAKHGLSVADKPDSQDICFVPNGDYASVIEKLRPGAGEPGEIVD 246

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++G +LG H G+I+YTIGQRRGLG+  +  PL+VV LD ++ RVIVGP+E+L    + LR
Sbjct: 247 MDGTVLGAHRGVIHYTIGQRRGLGIGGLETPLYVVKLDPDARRVIVGPKEALSTRHVPLR 306

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD          +   VK+RS++ P    ++  +D    V+    E GV+ GQAC
Sbjct: 307 EINWLGDAPLSSRAE--WPIAVKVRSTRPPRDAILRPISDTEATVELLTPEEGVSPGQAC 364

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D +  R+ GGG I
Sbjct: 365 VFY--DPDGTRIFGGGWI 380


>gi|254465357|ref|ZP_05078768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium Y4I]
 gi|206686265|gb|EDZ46747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium Y4I]
          Length = 381

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T +NSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDHNTTVNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G +G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GPNGPE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L
Sbjct: 236 AEPGEIVHSDGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F     D +   VK+RS++ P    ++   D    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY S+ +  R+ GGG I
Sbjct: 354 GISPGQACVFYASEGS--RIFGGGWI 377


>gi|254475742|ref|ZP_05089128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. R11]
 gi|214029985|gb|EEB70820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. R11]
          Length = 381

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M       LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MAQESNPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GAHGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG+HNG+I+YTIGQRRGLG+  + EPL+VV LD ++ +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLGQHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDNKQVVVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F        K  VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFTSQPEWHLK--VKVRSTRPPREAIIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  + +  R+ GGG I
Sbjct: 354 GVSPGQACVFYAGEGS--RIYGGGWI 377


>gi|89069527|ref|ZP_01156871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola granulosus HTCC2516]
 gi|89044862|gb|EAR50952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola granulosus HTCC2516]
          Length = 379

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/378 (51%), Positives = 248/378 (65%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L R+GYDV+GVTLQLY+   A  RKG+CC
Sbjct: 7   LNSLGFAKPPAQTRVVVAMSGGVDSSVVAAELAREGYDVVGVTLQLYDHGAALARKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  F++AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT +QL  L
Sbjct: 127 LLETARDLDADCMATGHYIQRKM-----GAHGPELHSAADAARDQSYFLFSTTPEQLAYL 181

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA   GL +ADK DSQDICFV  G Y  V++++  G A  GDIV 
Sbjct: 182 RFPLGHLASKAETRALAGRHGLPVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGDIVD 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD ++ RV+VGP+E L    + +R
Sbjct: 242 TEGRVLGTHRGLIHYTIGQRRGLGIGGLADPLYVVKLDVDTRRVVVGPKELLATRTVPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGDG F +      +  VK+RS++ P    ++  +     V+    E GV+ GQAC
Sbjct: 302 EINWLGDGGFLEG--GPREISVKVRSTRPPTEALLRPISATEAEVELLTPEEGVSPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  ++   RVLGGG I
Sbjct: 360 VFY--ETGGTRVLGGGWI 375


>gi|56696559|ref|YP_166916.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria pomeroyi DSS-3]
 gi|81349989|sp|Q5LST9|MNMA_SILPO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56678296|gb|AAV94962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria pomeroyi DSS-3]
          Length = 375

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 3   LNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAALAKKGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 63  AGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R L AD +ATGHYI+ ++  G +G    + C   D  RDQSYFLF+TT +QL  L
Sbjct: 123 LLETARDLEADCMATGHYIQRKM--GPNGP--ELHCA-EDANRDQSYFLFSTTPEQLDYL 177

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G A  G+IVH
Sbjct: 178 RFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIVH 237

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L    I +R
Sbjct: 238 ADGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVRLDVDRKQVVVGPKELLATRTIPVR 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F       +   VK+RS++ P    V+  ++    V+    E GV+ GQAC
Sbjct: 298 EINWLGDAPFTSR--PEWHLSVKVRSTRPPREAIVRPISETEAEVELLTPEEGVSPGQAC 355

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY SD +  R+ GGG I
Sbjct: 356 VFYESDGS--RIFGGGWI 371


>gi|209964264|ref|YP_002297179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum centenum SW]
 gi|259495835|sp|B6ISD0|MNMA_RHOCS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209957730|gb|ACI98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum centenum SW]
          Length = 392

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/399 (50%), Positives = 253/399 (63%), Gaps = 23/399 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSL  DK P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+      RKG+CC
Sbjct: 1   MNSLGFDKAPQDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGLTVGRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+YDAR+V D I++ HYV DYE RF  +VI  FA SY  GETP+PCV CN+ VKF D
Sbjct: 61  AGQDIYDARQVADRIDIPHYVLDYESRFGQSVIDDFADSYLRGETPIPCVRCNQRVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R LGAD LATGHY  +R   G  G     + R  D  RDQSYFLFATT  QL  L
Sbjct: 121 LLAQARDLGADCLATGHY--ARRVAGPTGP---ALHRGADPARDQSYFLFATTPAQLDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFP+G + K   R LA  +GL +ADK DSQDICFV  G Y  VV+++  G    G+IVHL
Sbjct: 176 RFPIGHLPKSETRALAERLGLAVADKPDSQDICFVPAGNYAQVVEKLRPGAVEPGEIVHL 235

Query: 249 NGQILGRHNGIINYTI-----GQRRGLGVAMGE---PLFVVYLDKNSSRVIVGPRESLEV 300
           +G++LGRH+G+I YT+         G     GE   PL+VV ++  + RV+VGPR +L  
Sbjct: 236 DGRVLGRHDGVIRYTVGQRRGLGIGGRRTPEGEELDPLYVVRVEPETRRVVVGPRTALAR 295

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGV 359
            R+ +RE+NWLG     D  V      VK+RS+Q  +P  V    D G  V   + + GV
Sbjct: 296 DRVLVREVNWLGGTDTADVPVT-----VKLRSAQPALPARVSLTADGGAVVTLTQPQYGV 350

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           A GQA VFY  D    RVLGGG I  ++ S A+ ++ + 
Sbjct: 351 APGQAAVFYQGD----RVLGGGWIVRAEASPALADAPIP 385


>gi|163736308|ref|ZP_02143727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis BS107]
 gi|161390178|gb|EDQ14528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis BS107]
          Length = 381

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M      +LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ +     DG     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H+G+I+YTIGQRRGLG+  + EPL+VV LD ++ +V+VGP+E L
Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F     D +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  + +  R+ GGG I
Sbjct: 354 GISPGQACVFYAEEGS--RIFGGGWI 377


>gi|163741163|ref|ZP_02148555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385516|gb|EDQ09893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis 2.10]
          Length = 381

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M      +LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ +     DG     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H+G+I+YTIGQRRGLG+  + EPL+VV LD ++ +V+VGP+E L
Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F     D +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  + +  R+ GGG I
Sbjct: 354 GISPGQACVFYAGEGS--RIFGGGWI 377


>gi|254437717|ref|ZP_05051211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 307]
 gi|198253163|gb|EDY77477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 307]
          Length = 379

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/378 (51%), Positives = 250/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++     G R   +    D  RDQSYFLF+T  +QL  L
Sbjct: 127 LLETAKDLDADCMATGHYIQRKM-----GPRGAQLHCAEDANRDQSYFLFSTKPEQLEYL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K++ R+LAR+ GL +ADK DSQDICFV  G Y  V++++  G A  G+IV 
Sbjct: 182 RFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGNIVD 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++G +L +H G+I+YTIGQRRGLG+  + +PL+VV LD +   VIVGP++ L    + +R
Sbjct: 242 IDGTVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKDLLTTRTVPVR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD  F+          VKIRS++ P+   V+  +     ++    E GVA GQAC
Sbjct: 302 EINWLGDDAFDSKTERHIS--VKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY SDS+  R+ GGG I
Sbjct: 360 VFYDSDSS--RIFGGGWI 375


>gi|294084590|ref|YP_003551348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664163|gb|ADE39264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 419

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/397 (47%), Positives = 261/397 (65%), Gaps = 17/397 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
            ++ + +NSL   K P D RVVVAMSGGVDSSV AA+L  +GY+VIG+TLQLY+   A +
Sbjct: 27  TADLSAINSLGFAKAPADTRVVVAMSGGVDSSVTAAMLHDEGYEVIGITLQLYDHGVAVQ 86

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            KG+CCAG D++DAR V   + + HYV DYE +FR+ V+  FA SY  GETP+PCV CN+
Sbjct: 87  TKGACCAGIDIHDARTVSARLGIPHYVLDYESKFRDQVMEDFADSYLRGETPIPCVRCNQ 146

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           TVKF+DLL+  ++LGAD LATGHY++ RL    +     ++ R +D  +DQSYFLFATT 
Sbjct: 147 TVKFTDLLTTAQELGADCLATGHYVQ-RL----ETPAGPVLRRGIDASKDQSYFLFATTA 201

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+  LRFPLG + K+  RDLAR+ GL +++K DSQDICFV  G+Y DVV+R+  G    
Sbjct: 202 EQMDYLRFPLGGLTKDETRDLARKYGLAVSEKPDSQDICFVPNGRYGDVVRRLRPGAVEA 261

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-------MGEPLFVVYLDKNSSRVIVGPR 295
           GDIVHL+G +LG+H G+I+YTIGQRRGLG+           PL+VV +D  + RVIVGP+
Sbjct: 262 GDIVHLDGTVLGQHKGVIDYTIGQRRGLGIGGRKDADEADGPLYVVGIDAAAHRVIVGPQ 321

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354
            +L  + ++L E +W+  G    A V G     ++R++   +P  ++  + G   V  + 
Sbjct: 322 SALACYEVHLSETSWVAGG---GAPVAGHPVLARLRNTAPAMPAVLEAGEGGCAIVRLDD 378

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
            + G+A GQA   Y +   E  +LGGG IS +  + A
Sbjct: 379 PQFGIAVGQAAAIYDAADPE-NLLGGGWISAAPLAGA 414


>gi|260433794|ref|ZP_05787765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417622|gb|EEX10881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 381

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDTEPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              VKF DLL   + L AD +ATGHYI+ ++  G +G    + C   D  RDQSYFLF+T
Sbjct: 121 KERVKFKDLLETAKDLEADCMATGHYIQRKM--GPNGP--ELHCA-EDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLEFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG+H+G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLGQHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDRKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F       +   VK+RS++ P    ++   D    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSQ--KEWHVSVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++  +R+ GGG I
Sbjct: 354 GVSPGQACVFY--ETGGSRIFGGGWI 377


>gi|330813834|ref|YP_004358073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486929|gb|AEA81334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 379

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/381 (49%), Positives = 253/381 (66%), Gaps = 13/381 (3%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +    +NSL   K P++ +VVVAMSGGVDSS VA LLK   Y VIG+TLQLY+  K  K 
Sbjct: 7   TNTNSINSLGFAKAPEETKVVVAMSGGVDSSTVAGLLKEQNYHVIGITLQLYDYGKIGKT 66

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
            G+CCAG+D+YDA+RV + +N+ H+VF+YE  F+  VI  FA SY  GETP+PCV CN+T
Sbjct: 67  SGTCCAGKDIYDAKRVSEQLNIEHHVFNYESLFKEEVIEKFADSYLKGETPIPCVSCNQT 126

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DL    ++LGAD L TGHY++    +G+  + +  M +P+D  RDQSYFLF+TTQ+
Sbjct: 127 VKFRDLFKSAKKLGADALVTGHYVKR---LGNLNQSK--MYQPVDANRDQSYFLFSTTQE 181

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL  LRFPL D+ K+  RDLA++M L +ADK DSQDICFV  G Y  V++++       G
Sbjct: 182 QLDYLRFPLADLPKQETRDLAKKMNLSVADKPDSQDICFVPNGNYKSVIEKLRPESYDPG 241

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +IV L G++LGRHNGIIN+TIGQR+G+ V    E +FV+ ++  +  VIVG R+ L + +
Sbjct: 242 NIVDLEGKVLGRHNGIINFTIGQRKGIKVGGQEEAIFVIKINPETKDVIVGSRQDLNITK 301

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           I ++EIN+L D       ++G   F+K+RS+   +P  V  +D    V  +  E GV+ G
Sbjct: 302 IQVKEINFLCD----PKELEG-NFFIKVRSTGRLLPCRV--SDSATSVTLQAGESGVSPG 354

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QACVFY  D    RV GGG I
Sbjct: 355 QACVFYRKDDKGMRVYGGGWI 375


>gi|126737635|ref|ZP_01753365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. SK209-2-6]
 gi|126721028|gb|EBA17732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. SK209-2-6]
          Length = 381

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDNDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+  +  G+ G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRMM--GEQGPE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP++ L
Sbjct: 236 AEPGEIVHSDGRVLGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKDLL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F        K  VK+RS++ P    ++   +    V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFTSQKEWHLK--VKVRSTRPPREAIIRPLTETTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY S+ +  R+ GGG I
Sbjct: 354 GISPGQACVFYASEGS--RIFGGGWI 377


>gi|288958853|ref|YP_003449194.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azospirillum sp. B510]
 gi|288911161|dbj|BAI72650.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azospirillum sp. B510]
          Length = 391

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 199/385 (51%), Positives = 256/385 (66%), Gaps = 16/385 (4%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSL L K P+D RVVVAMSGGVDSSV AA+L+ +GYDV+G+TLQLY+   A ++ G+CC
Sbjct: 1   MNSLGLSKRPQDTRVVVAMSGGVDSSVTAAVLREEGYDVVGITLQLYDHGLALQKPGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+YDAR+V D I + HYV DYE RF   V+  FA SY  GETP+PCV CN+ VKF D
Sbjct: 61  AGQDIYDARQVADRIGIPHYVLDYEGRFSQDVMDDFADSYLRGETPIPCVRCNQRVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R LGAD LATGHY+R R+     G R   + R +D  +DQSYFLFATT++QL  L
Sbjct: 121 LLNTARDLGADALATGHYVR-RIA----GPRGAELHRAVDPAKDQSYFLFATTREQLEFL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA   GL++A K DSQDICFV  G Y +VV ++  G    GDIVH+
Sbjct: 176 RFPLGGLTKPETRALAGRHGLEVAAKPDSQDICFVPNGNYAEVVAKLRPGSVEPGDIVHV 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +G++LGRH G+++YT+GQR+GLG+        E L+VV L+    RV+VGPR  L    +
Sbjct: 236 DGRVLGRHKGVVHYTVGQRKGLGIGGIRGQEEEALYVVRLEPARRRVVVGPRRDLARSLV 295

Query: 304 YLREINWLG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVAS 361
            +R++NWLG D   + A   G +  VK+RS+Q   P       DG   V+  + + G+A 
Sbjct: 296 MVRDVNWLGSDPAPDQADGAGLEVSVKLRSAQPAAPALWHAGPDGTARVELREPQHGIAP 355

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQACV Y  D    RVLGGG ISG+
Sbjct: 356 GQACVVYQGD----RVLGGGWISGT 376


>gi|89054998|ref|YP_510449.1| tRNA-specific 2-thiouridylase MnmA [Jannaschia sp. CCS1]
 gi|122498420|sp|Q28PD8|MNMA_JANSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88864547|gb|ABD55424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jannaschia sp. CCS1]
          Length = 380

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/386 (49%), Positives = 253/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  +  LNSL   K P D RVVVAMSGGVDSS VAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDRSDGLNSLGFAKAPADTRVVVAMSGGVDSSAVAAQLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG+D++DA RV +T+   HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGRDIHDAARVAETMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G+ +  +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GREKAELHSAADAARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            Q+QL  LRFPLG ++ K   R LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 KQEQLDFLRFPLGHLESKAETRALAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV ++G +L  H G+I+YTIGQRRGLG+  + +PL+VV LD ++ RVIVGP+E L
Sbjct: 236 ADPGEIVDIDGNVLAMHRGVIHYTIGQRRGLGIGGLDDPLYVVKLDPDTRRVIVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD  F+      ++  VKIRS++ P    ++  +     V+   +E 
Sbjct: 296 STRTVPVREINWLGDTPFDSQ--QEWQMDVKIRSTRPPRGAVIRPVSATEAEVELIVAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  +    R+ GGG I
Sbjct: 354 GVSPGQACVFYAPEGG--RIFGGGWI 377


>gi|126736443|ref|ZP_01752184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. CCS2]
 gi|126713981|gb|EBA10851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. CCS2]
          Length = 379

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 249/378 (65%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K+P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGFAKSPAQTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AV+  FA SY  G TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+  +  G +G        P    +DQSYFLF+TTQ QL  L
Sbjct: 127 LLETAKDLDADCMATGHYIQRMM--GANGAELHSAADPT---KDQSYFLFSTTQDQLDYL 181

Query: 189 RFPLG-DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG    KE  R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G+IV 
Sbjct: 182 RFPLGHHASKEETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGNIVD 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            +G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD +   VIVGP++ L   R+ +R
Sbjct: 242 TDGKVLGTHKGVIHYTIGQRRGLGIGGLADPLYVVKLDVDRKEVIVGPKDLLATRRVPIR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINW+GDG   D  +   +  V++RS++ P    ++  ++    V+   +E GV+ GQAC
Sbjct: 302 EINWIGDGNLMD--MGERQIAVRVRSTRPPTDAVLRPISETEAEVELLVAEQGVSPGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  DS   RVLGGG I
Sbjct: 360 VFYDPDST--RVLGGGWI 375


>gi|126726432|ref|ZP_01742273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
 gi|126704295|gb|EBA03387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
          Length = 377

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/380 (50%), Positives = 248/380 (65%), Gaps = 12/380 (3%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSL   K P D RVVVAMSGGVDSSVVAA+L   GYDV+GVTLQLY+   A  +KG+
Sbjct: 4   TPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAVLAEQGYDVVGVTLQLYDHGAALAKKGA 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAG+D++DARRV +T+   HYV DYE +F+ AVI  FA SY AG TP+PC+ CN  VKF
Sbjct: 64  CCAGRDIHDARRVAETMGFPHYVLDYENKFKEAVIDEFADSYLAGATPVPCIRCNERVKF 123

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL   + L AD +ATGHYI+  +     G  +  + +  D  RDQSYFLF+T Q QL 
Sbjct: 124 KDLLETAKDLDADCMATGHYIQRMM-----GDTKAELHQAADGNRDQSYFLFSTKQDQLD 178

Query: 187 DLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A  GDI
Sbjct: 179 YLRFPLGHLTSKAETRALAAKYGLPVADKPDSQDICFVPNGNYAAVIEKLRPGSAEPGDI 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           V  +G ILG HNG+I+YTIGQRRGLG+  + +PL+VV LD +  +V+VG +E L    + 
Sbjct: 239 VDTDGNILGAHNGVIHYTIGQRRGLGIGGLADPLYVVRLDVDKRQVVVGAKELLATRTVP 298

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQ 363
           L EINWLGD        D +   V++RS++ P   V    ++    V+   +E G+++GQ
Sbjct: 299 LGEINWLGDEPLMSR--DEWHLDVRVRSTRPPRGAVLRPISETTATVELITAEEGISAGQ 356

Query: 364 ACVFYTSDSNEARVLGGGII 383
           ACVFY  D+   R+ GGG I
Sbjct: 357 ACVFY--DTESTRIFGGGWI 374


>gi|83593359|ref|YP_427111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
 gi|123526416|sp|Q2RSS1|MNMA_RHORT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83576273|gb|ABC22824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 377

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/384 (50%), Positives = 247/384 (64%), Gaps = 12/384 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSC 67
           ++   L   P   RVVVAMSGGVDSSV AALLK  G+DV+G+T++LY+  K       +C
Sbjct: 1   MSQTPLSPPPVGGRVVVAMSGGVDSSVTAALLKEQGHDVVGLTMRLYDHGKPLGPGARTC 60

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD++DARRV D + ++HYV DYE RFR  VI PFA+SY  GETP+PCV CN+TVKF 
Sbjct: 61  CAGQDIHDARRVADRLGIAHYVLDYESRFREDVIEPFAASYGRGETPIPCVLCNQTVKFR 120

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+    LG   LATGHY+R RL    DG     + R +D  RDQSYFLFATT+ QL  
Sbjct: 121 DLLAAALDLGGTALATGHYVR-RL----DGPEGPRLYRAVDPGRDQSYFLFATTKGQLGR 175

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           L FPLG M  K+  R +AR +GL + DK DSQDICFV  G Y  VV+R+  G+   G+IV
Sbjct: 176 LLFPLGAMASKDETRAIARRLGLAVGDKPDSQDICFVPDGDYAKVVERLRPGVVEAGEIV 235

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L+G +LG H G+I++T+GQRRG+G+    EPL+V+ LD  + R++VGP  +L    I +
Sbjct: 236 DLDGTVLGHHPGLIHFTVGQRRGVGIGGSAEPLYVIALDTATHRLVVGPHAALARREIAV 295

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQ 363
             +NWLG+G  E     G +  +KIR +  P P  +F         V  ++   GVA GQ
Sbjct: 296 SGLNWLGEG--EGPASAGTRARIKIRHASPPFPGQIFPGAAAGEARVVLDEPAHGVAPGQ 353

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
           A VFY  D N+ARVLGGG I  S+
Sbjct: 354 AAVFYGLDDNDARVLGGGWIGASR 377


>gi|83942322|ref|ZP_00954783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. EE-36]
 gi|83846415|gb|EAP84291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. EE-36]
          Length = 380

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P D RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG+CCAG D++DARRV +++   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G DG    + C   D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GPDGA--ELHCA-ADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV  +G +L +H+G+INYTIGQRRGLG+  + +PL+VV LD ++++V+VGP+  L
Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + ++EINWLGD          +   V++RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRTVPVKEINWLGDTPLMSQ--SEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  D    R+ GGG I
Sbjct: 354 GISPGQACVFY--DPESTRIFGGGWI 377


>gi|310816020|ref|YP_003963984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ketogulonicigenium vulgare Y25]
 gi|308754755|gb|ADO42684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ketogulonicigenium vulgare Y25]
          Length = 379

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL + K   + RVVVAMSGGVDSSVVAA LKR+GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 7   LNSLGIAKPVAETRVVVAMSGGVDSSVVAAQLKREGYDVVGVTLQLYDHGAALAKKGACC 66

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV + +   HYV DYE  FR AVI  FA SY AG TP+PC+ CN  VKF D
Sbjct: 67  AGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKD 126

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++  GD       +    D  RDQSYFLF+TT +QL  L
Sbjct: 127 LLQTAKDLDADCMATGHYIQRKM--GDYAPE---LHSAADPNRDQSYFLFSTTPEQLAYL 181

Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +K K   R LA E GL +ADK DSQDICFV  G Y  V++++    A  G+IV 
Sbjct: 182 RFPLGHLKSKAETRALAAEFGLGVADKPDSQDICFVPDGNYAAVIEKLRPDAAQPGEIVD 241

Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           +NG++LG+H G+I+YT+GQ R      +GEP++VV LD ++ RVIVGP+ +L   R+ LR
Sbjct: 242 MNGKVLGQHPGVIHYTVGQRRGLGVGGLGEPVYVVRLDVDTRRVIVGPKSALATRRVPLR 301

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           E+NWLGDG F D      +  V++RSS+ P    ++  +     V+    E GV+ GQAC
Sbjct: 302 EVNWLGDGAFTDMAERHIR--VRVRSSRPPAEAILRPLSATTAEVELLTPEEGVSIGQAC 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY ++ +  RVLGGG I
Sbjct: 360 VFYETEGS--RVLGGGWI 375


>gi|329849969|ref|ZP_08264815.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Asticcacaulis biprosthecum C19]
 gi|328841880|gb|EGF91450.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Asticcacaulis biprosthecum C19]
          Length = 395

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 190/371 (51%), Positives = 252/371 (67%), Gaps = 7/371 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+V AMSGGVDS+VVAALL   GY+VIGVTLQLY+   A K+ G+CCAGQD++DAR
Sbjct: 28  PAGARIVAAMSGGVDSTVVAALLAAAGYEVIGVTLQLYDHGAALKKTGACCAGQDIHDAR 87

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR+ VI  FA SY  GETP+PC+ CN++VKF+DLL V R LG
Sbjct: 88  MASEKIGIPHYVLDYESRFRDQVIEEFADSYLRGETPVPCIRCNQSVKFNDLLQVARDLG 147

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY+       +DG     + R  D  RDQSYFLFATT++QL  LRFPL  + K
Sbjct: 148 AEAMATGHYVERS---DEDGVVS--LRRAADQSRDQSYFLFATTREQLDYLRFPLAGIPK 202

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VRD+A ++GL +A K DSQDICFV +GKY +++ R+      +G I H++G++LG H+
Sbjct: 203 PQVRDIAVQLGLKVAQKPDSQDICFVPEGKYTNLIDRLRPQGREKGAIRHIDGRVLGTHD 262

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGL VA+GEPLFVV +D ++  ++VGPRE+L    + L+E NWLG     
Sbjct: 263 GITGYTIGQRRGLNVAVGEPLFVVKIDPDAKEILVGPREALLTRALTLKETNWLGSETDV 322

Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA     K    ++RS++ PV   +     G+ V+F+ +E GVA GQACV Y  + +  R
Sbjct: 323 DAAAGLRKPVLARVRSTRPPVAARLVAGVSGIEVEFDDAEEGVAPGQACVLYDVE-DSGR 381

Query: 377 VLGGGIISGSK 387
           VLGGG I+ ++
Sbjct: 382 VLGGGFIAATR 392


>gi|163731902|ref|ZP_02139349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter litoralis Och 149]
 gi|161395356|gb|EDQ19678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter litoralis Och 149]
          Length = 380

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 186/386 (48%), Positives = 249/386 (64%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  +  LNSL   K P   RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDPSPMLNSLGFAKPPAQTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ +      G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRK-----SGPCGAELHSAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  KE  R LA + GL +A+K DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPNGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV ++G++L  H+G+IN+TIGQRRGLG+  +  PL+V+ LD  + +V+VGP+  L
Sbjct: 236 AAPGNIVDVDGRVLATHDGVINFTIGQRRGLGIGGLATPLYVIKLDAQTRQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD   +    D +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 STRTVPVREINWLGDEPLQSR--DEWHLAVKVRSTRPPTDAIIRPISETEATVELTSPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY +DS+  R+ GGG I
Sbjct: 354 GVSPGQACVFYDTDSS--RIYGGGWI 377


>gi|294010267|ref|YP_003543727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sphingobium japonicum UT26S]
 gi|292673597|dbj|BAI95115.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sphingobium japonicum UT26S]
          Length = 373

 Score =  362 bits (928), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 195/373 (52%), Positives = 240/373 (64%), Gaps = 21/373 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL   P   R+VVAMSGGVDSSVVAAL  R G + IGVTLQLY+   A  R GSCCAGQ
Sbjct: 10  FDLKAPPDARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTGSCCAGQ 69

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D I ++HYVFDYE RFR++VI  FA  Y AG TP+PCV CN  VKF+DL  
Sbjct: 70  DIRDARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQ 129

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R       +G +   + R  D  RDQSYFLFATTQ QL  LRFP
Sbjct: 130 IARDLGADCLATGHYVRRV-----EGPQGAELHRAADSARDQSYFLFATTQAQLDYLRFP 184

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K DSQDICFV  G Y  +V+++       GDIVH++G+
Sbjct: 185 LGGLPKPQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGDIVHIDGR 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++G H G+I+YT+GQR+GL +    EPL+VV LD  + RVIVGP+ +L V    L +INW
Sbjct: 245 LMGTHKGMIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAARLSDINW 304

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           LG G F   +        K+RS   PVP  ++    G  + F+  E GVA GQA V Y  
Sbjct: 305 LG-GDFAGPLT------AKVRSMAKPVPARLE----GDRLVFDAPEYGVAPGQAAVLYAG 353

Query: 371 DSNEARVLGGGII 383
           D    RVLGGG I
Sbjct: 354 D----RVLGGGWI 362


>gi|83953541|ref|ZP_00962262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841486|gb|EAP80655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. NAS-14.1]
          Length = 380

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 189/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P D RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG+CCAG D++DARRV +++   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G DG    + C   D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GLDGA--ELHCA-ADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV  +G +L +H+G+INYTIGQRRGLG+  + +PL+VV LD ++++V+VGP+  L
Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + ++EINWLGD          +   V++RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRTVPVKEINWLGDTPLMSQ--SEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  D    R+ GGG I
Sbjct: 354 GISPGQACVFY--DPESTRIFGGGWI 377


>gi|229586563|ref|YP_002845064.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia africae ESF-5]
 gi|259495837|sp|C3PN11|MNMA_RICAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|228021613|gb|ACP53321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia africae ESF-5]
          Length = 365

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 242/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNVVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y      ARV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKFGDDKMKVKFLCEEKAVAPGQACVIYAG----ARV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|119386805|ref|YP_917860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paracoccus denitrificans PD1222]
 gi|205816904|sp|A1B9H0|MNMA_PARDP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119377400|gb|ABL72164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paracoccus denitrificans PD1222]
          Length = 389

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/381 (50%), Positives = 251/381 (65%), Gaps = 14/381 (3%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           + +NSL   K P   RVVVAMSGGVDSSVVAA+L   GYDVIGVTLQLY+   A  +KG+
Sbjct: 15  STVNSLGFPKPPAQTRVVVAMSGGVDSSVVAAMLAAQGYDVIGVTLQLYDHGAALAKKGA 74

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD++DARRV + I   HYV DYE +FR +VI  FA +Y AG TP+PC+ CN  VKF
Sbjct: 75  CCAGQDIHDARRVAERIGFPHYVLDYENKFRESVIEEFADAYLAGATPVPCIRCNERVKF 134

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL   R+L AD +ATGHYIR RL +G  G    +   P    RDQSYFLF+TTQ+QL 
Sbjct: 135 RDLLQTARELDADCMATGHYIR-RL-MGPKGAELHMAADPA---RDQSYFLFSTTQEQLD 189

Query: 187 DLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G+I
Sbjct: 190 FLRFPLGGLASKAETRALAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGAADPGEI 249

Query: 246 VHLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           V ++G +LG H G+I+YTIGQ R      +G+PL+VV L+ ++ RV+VGP+++L    + 
Sbjct: 250 VDMDGNVLGSHRGVIHYTIGQRRGLGIGGLGDPLYVVRLEPDTRRVVVGPKQALATKIVP 309

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
           + E+NWLGD  FED +        +IRS++ P P  ++        ++    E GV+ GQ
Sbjct: 310 VTEVNWLGDEPFEDEIA----VTARIRSTRPPRPAILRVTGKHRAEIELLDPEEGVSPGQ 365

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           ACVFY ++ +  RVLGGG IS
Sbjct: 366 ACVFYATEGS--RVLGGGWIS 384


>gi|205821554|sp|A8F172|MNMA_RICM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 365

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 243/367 (66%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F  +E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|307293549|ref|ZP_07573393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobium chlorophenolicum L-1]
 gi|306879700|gb|EFN10917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobium chlorophenolicum L-1]
          Length = 376

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/367 (52%), Positives = 239/367 (65%), Gaps = 21/367 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVAMSGGVDSSVVAAL  R G + IGVTLQLY+   A  R GSCCAGQD+ DAR V D
Sbjct: 23  RIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I ++HYVFDYE RFR +VI  FA  Y AG TP+PCV CN  VKF+DL  + R LGAD L
Sbjct: 83  RIGIAHYVFDYESRFRESVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQIARDLGADCL 142

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       +G +   + R  D  RDQSYFLFATTQ QL  LRFPLG + K  VR
Sbjct: 143 ATGHYVRRV-----EGPQGAELHRAADPARDQSYFLFATTQAQLDYLRFPLGGLPKPQVR 197

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL +A K DSQDICFV  G Y  +V+++       GDIVH++G+++G H G+I+
Sbjct: 198 EIAAELGLSVAMKPDSQDICFVPDGDYAKIVRKLRPDADAGGDIVHIDGRLMGTHKGMIH 257

Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           YT+GQR+GL +    EPL+VV LD  + RVIVGP+ +L V    L +INWLG G F   +
Sbjct: 258 YTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAARLSDINWLG-GDFSGPL 316

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   K+RS   PVP  ++    G  + F+  E GVA GQA V Y  D    RVLGG
Sbjct: 317 T------AKVRSMAKPVPARLE----GDRLLFDAPEYGVAPGQAAVLYAGD----RVLGG 362

Query: 381 GIISGSK 387
           G I+ ++
Sbjct: 363 GWIAATE 369


>gi|157828286|ref|YP_001494528.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|166235079|sp|A8GRJ5|MNMA_RICRS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822057|sp|B0BWZ7|MNMA_RICRO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157800767|gb|ABV76020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 365

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 241/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K 
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y      ARV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|71083529|ref|YP_266248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762051|ref|ZP_01264016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|123646720|sp|Q4FME4|MNMA_PELUB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71062642|gb|AAZ21645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717853|gb|EAS84503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 371

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/379 (46%), Positives = 252/379 (66%), Gaps = 13/379 (3%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T+LNS+ + K+PKD  V+VAMSGGVDSS VAA++K +GY+VIG+TL+LYN  K +     
Sbjct: 2   TKLNSIGIAKDPKDTLVIVAMSGGVDSSTVAAMMKNEGYNVIGITLKLYNDSKETASSKQ 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+ DA+RV D + + H +  Y+ +F+  VI  F  SY  GETP+PCV CN+TVKF
Sbjct: 62  CCAGQDIMDAKRVADKLKIEHKILYYQNKFKEGVIDNFIDSYLNGETPIPCVQCNKTVKF 121

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +DL    ++L AD L TGHY++S        K    M R +DL RDQSYFLF TT+ QL 
Sbjct: 122 TDLFEEAKRLNADALVTGHYVKSITE-----KDNTDMYRGIDLNRDQSYFLFNTTKDQLN 176

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG++ K+  R++ARE+ L++ADK DSQDICFV  G Y  V+++       +G+I 
Sbjct: 177 FLRFPLGNLLKDETRNIARELDLNVADKPDSQDICFVPNGDYASVIEKFRPNSFSKGNIK 236

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++NG+++G H+GIINYTIGQR+G+GV+   PL+VV +  + + +IVG +E L   +I L+
Sbjct: 237 NMNGEVIGVHDGIINYTIGQRKGIGVSDKNPLYVVKIIADKNEIIVGAKEHLVKTKINLK 296

Query: 307 EINWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           ++N + +        + FK   FVK+RS+   +   +  ND    V+  + E G+A GQA
Sbjct: 297 DLNIITNDQ------NDFKNELFVKVRSTGRLIKAKIDINDTNANVNLLEEEHGIAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY  ++N  +VLGGG I
Sbjct: 351 CVFYAKNNNGYKVLGGGWI 369


>gi|94498089|ref|ZP_01304652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. SKA58]
 gi|94422524|gb|EAT07562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. SKA58]
          Length = 368

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/373 (52%), Positives = 244/373 (65%), Gaps = 22/373 (5%)

Query: 17  NPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            P+D R +VVAMSGGVDSSVVAAL  + G +VIGVTLQLY+   A  R GSCCAGQD+ D
Sbjct: 9   EPRDQRRIVVAMSGGVDSSVVAALAAKTGAEVIGVTLQLYDHGAAVGRTGSCCAGQDIRD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V D I ++HYVFDYE RFR++VI  FA  Y AG TP+PCV CN  VKF+DL  + R 
Sbjct: 69  ARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQIARD 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY+R       +G     + R  D  RDQSYFLFATTQ QL  LRFPLG +
Sbjct: 129 LGADCLATGHYVRRV-----EGAAGAELHRAADPARDQSYFLFATTQAQLDYLRFPLGGL 183

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++A E+GL +A K DSQDICFV  G Y  +V+++       G+IVH++G+++GR
Sbjct: 184 PKSQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGEIVHVDGRVMGR 243

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G+I+YT+GQR+GL +    EPL+VV LD  + RVIVGP+ +L V    L +INWLG G
Sbjct: 244 HRGLIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSGALLSDINWLG-G 302

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            F   +        K+RS   PVP  ++    G  + F+  E GVA GQA V Y  D   
Sbjct: 303 DFAGPLT------AKVRSMARPVPARLE----GDRLIFDAPEYGVAPGQAAVLYAGD--- 349

Query: 375 ARVLGGGIISGSK 387
            RVLGGG I+ ++
Sbjct: 350 -RVLGGGWIASTQ 361


>gi|165932990|ref|YP_001649779.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str.
           Iowa]
 gi|165908077|gb|ABY72373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia rickettsii str. Iowa]
          Length = 370

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 241/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 12  KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 72  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K 
Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 186

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y      ARV
Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 359

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 360 LGGGWIT 366


>gi|15892333|ref|NP_360047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia conorii str. Malish 7]
 gi|20455354|sp|Q92IL0|MNMA_RICCN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15619478|gb|AAL02948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia conorii str. Malish 7]
          Length = 370

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 183/367 (49%), Positives = 242/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 12  KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 72  VANKLGIPHYVLDYENKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 186

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RV
Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 359

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 360 LGGGWIT 366


>gi|103487513|ref|YP_617074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingopyxis alaskensis RB2256]
 gi|123379667|sp|Q1GRI1|MNMA_SPHAL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|98977590|gb|ABF53741.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingopyxis alaskensis RB2256]
          Length = 382

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/366 (52%), Positives = 244/366 (66%), Gaps = 18/366 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+VVAMSGGVDSSVVAAL  R G +VIGVTLQLY+    +KR G+CCAGQD+ DAR 
Sbjct: 27  KDRRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAKAKRVGACCAGQDIRDARA 86

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D +   H+V D+E RFR+ VI  FA  Y AG TP+PCV CN  VKF+DL  + R+LGA
Sbjct: 87  VADRLGFVHHVHDHESRFRDTVIDQFADEYLAGRTPIPCVRCNMGVKFTDLFQLARELGA 146

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R    +G DG     M R +D  RDQSYFLFATTQ+QL  LRFPLG ++K 
Sbjct: 147 DCLATGHYVRR--VMGPDGAE---MHRAVDPARDQSYFLFATTQEQLDFLRFPLGGLEKN 201

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++AR++GL +A K DSQDICFV  G Y  +V+++      +GDIVH++G +LG H G
Sbjct: 202 VVREIARDLGLGVAGKPDSQDICFVPDGDYASLVRKLRPEAEDQGDIVHVDGTVLGAHKG 261

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           +I+YT+GQRRG+ +    EPL+VV L+  + +VIVGPR +L V    L + NWL D    
Sbjct: 262 LIHYTVGQRRGIDIGGQAEPLYVVRLNAATKQVIVGPRRALAVSGARLGDANWLAD---- 317

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              V+G     K+RS   PVP  V  N     + F   E GVA GQA V Y + ++++RV
Sbjct: 318 ---VEGRDVLAKVRSMAKPVPARVTAN----RLRFLSPEYGVAPGQAAVLYDA-ADKSRV 369

Query: 378 LGGGII 383
           LGGG I
Sbjct: 370 LGGGWI 375


>gi|157964381|ref|YP_001499205.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia massiliae MTU5]
 gi|157844157|gb|ABV84658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia massiliae MTU5]
          Length = 374

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 243/367 (66%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 16  KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 76  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 135

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 136 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 190

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 191 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 250

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 251 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 310

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F  +E  VA GQACV Y  +    RV
Sbjct: 311 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 363

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 364 LGGGWIT 370


>gi|238650755|ref|YP_002916609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia peacockii str. Rustic]
 gi|259495838|sp|C4K1W0|MNMA_RICPU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|238624853|gb|ACR47559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia peacockii str. Rustic]
          Length = 365

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 241/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K SCCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNSCCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K 
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFMTTKEQLEYLRFPLGGLTKG 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|34580653|ref|ZP_00142133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia sibirica 246]
 gi|28262038|gb|EAA25542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia sibirica 246]
          Length = 365

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/367 (49%), Positives = 241/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG   K+
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGFTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|67458888|ref|YP_246512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia felis URRWXCal2]
 gi|75536671|sp|Q4UM73|MNMA_RICFE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|67004421|gb|AAY61347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia felis URRWXCal2]
          Length = 365

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 183/367 (49%), Positives = 241/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG + K+
Sbjct: 127 AQLATGHYVRK--VNGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I  G +  G I+H+NG  LG H+G
Sbjct: 182 ETRRLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGASESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    ++ INWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALHVQEFIIKNINWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + + +DD + V F   E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVEVKIRSTRPPRLAEISKLDDDKMKVKFLSEEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|241761211|ref|ZP_04759299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283856328|ref|YP_162504.2| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|292495018|sp|Q5NPG7|MNMA_ZYMMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|241374118|gb|EER63615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283775325|gb|AAV89393.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 370

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/375 (51%), Positives = 249/375 (66%), Gaps = 25/375 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             +DK     R+VVAMSGGVDSSVVAAL K  G + IG+TLQLY+   A  RKGSCCAG+
Sbjct: 5   FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V + I + HYVFDYE  F+ +VI  F S Y AG TP+PC+ CN+ VKF+DLL+
Sbjct: 65  DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R+LGAD LATGHY+R RL   D    R  M R +D  RDQSYFLFATT++QL  LRFP
Sbjct: 125 VARELGADCLATGHYVR-RLVNND----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K+DSQDICFV  G Y  +V+         GDIV + G+
Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +LG+H+G+I++T+GQRRGL +    EPL+V+ LD    +++VGPR++L V +  ++E+NW
Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299

Query: 311 LGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           L         VDGF  +  VKIRS+  PV        DG  + FEK E GV+ GQA VFY
Sbjct: 300 L---------VDGFDREMQVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D    +VLGGG I
Sbjct: 347 DGD----QVLGGGWI 357


>gi|157803967|ref|YP_001492516.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia canadensis str.
           McKiel]
 gi|166235078|sp|A8EZE8|MNMA_RICCK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157785230|gb|ABV73731.1| hypothetical protein A1E_04020 [Rickettsia canadensis str. McKiel]
          Length = 368

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/363 (49%), Positives = 242/363 (66%), Gaps = 13/363 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVAMSGGVDS+ VAA+L   GY+VIG+TLQLY+   A  +K +CCAGQD+YDA+ V + 
Sbjct: 11  IVVAMSGGVDSAAVAAMLHAQGYNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANK 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   ++LGA  LA
Sbjct: 71  LGIPHYVLDYESKFKESVIENFVDSYLQGETPLPCVQCNKSVKFKDLIKTAKELGAAQLA 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R     GD+G    I   P    +DQSYFLF TT++QL  L FPLG   K+  R 
Sbjct: 131 TGHYVRK--INGDNGAELHIGIDPA---KDQSYFLFTTTKEQLDYLSFPLGWFTKDETRK 185

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + GL++A+K DSQDICFV  G Y +V+ +I  G + +G I+H+NG  LG H+GIINY
Sbjct: 186 LASKFGLEVANKPDSQDICFVPDGNYKNVINKIRPGSSKKGKIIHVNGFELGEHSGIINY 245

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+A  EPL+V+ +D N++ V VGP  +L +    ++++NWL D + ++   +
Sbjct: 246 TIGQRRGLGIAYNEPLYVIKIDPNNNIVYVGPESALNMQEFIIKDVNWLADEIKDN---E 302

Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RVLGGG
Sbjct: 303 KLEVAVKIRSTRLPSLAEISKLGDDKMKVKFLSEEKAVAPGQACVIYDGE----RVLGGG 358

Query: 382 IIS 384
            I+
Sbjct: 359 WIT 361


>gi|260752750|ref|YP_003225643.1| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552113|gb|ACV75059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 370

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/375 (51%), Positives = 248/375 (66%), Gaps = 25/375 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             +DK     R+VVAMSGGVDSSVVAAL K  G + IG+TLQLY+   A  RKGSCCAG+
Sbjct: 5   FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V + I + HYVFDYE  F+ +VI  F S Y AG TP+PC+ CN+ VKF+DLL+
Sbjct: 65  DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R+LGAD LATGHY+R RL   D    R  M R +D  RDQSYFLFATT++QL  LRFP
Sbjct: 125 VARELGADCLATGHYVR-RLVNND----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K+DSQDICFV  G Y  +V+         GDIV + G+
Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +LG+H+G+I++T+GQRRGL +    EPL+V+ LD    +++VGPR++L V +  ++E+NW
Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299

Query: 311 LGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           L         VDGF     VKIRS+  PV        DG  + FEK E GV+ GQA VFY
Sbjct: 300 L---------VDGFDRGMQVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D    +VLGGG I
Sbjct: 347 DGD----QVLGGGWI 357


>gi|239947878|ref|ZP_04699631.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922154|gb|EER22178.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 370

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 182/367 (49%), Positives = 239/367 (65%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 12  KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV  YE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 72  VANKLGIPHYVLGYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG + K+
Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 186

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I  G +  G IVH+NG  LG H+G
Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSG 246

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  +PL+VV +D   + V VGP  +L V    ++++NWL D   E 
Sbjct: 247 IINYTIGQRRGLGIAYNKPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ET 303

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + + F   E  VA GQACV Y  +    RV
Sbjct: 304 KDNEKLEVAVKIRSTRPPRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RV 359

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 360 LGGGWIT 366


>gi|91205346|ref|YP_537701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii RML369-C]
 gi|157826947|ref|YP_001496011.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia bellii OSU 85-389]
 gi|122425762|sp|Q1RJ52|MNMA_RICBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235077|sp|A8GVU7|MNMA_RICB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91068890|gb|ABE04612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii RML369-C]
 gi|157802251|gb|ABV78974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii OSU 85-389]
          Length = 367

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/372 (48%), Positives = 246/372 (66%), Gaps = 13/372 (3%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ N +   +VVAMSGGVDSSVVA +L   GY+VIG+TLQLY+   A+ +K +CCAGQD+
Sbjct: 2   INSNDRQSTLVVAMSGGVDSSVVAGILCEQGYNVIGITLQLYDHGMATAKKNACCAGQDI 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDA+ V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   
Sbjct: 62  YDAKMVANKLGMPHYVLDYESKFKESVIDNFVDSYLRGETPLPCVQCNKSVKFRDLIKTA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGAD L TGHY+R     GD+G    +   P+   +DQSYFLFATT++QL  L FPLG
Sbjct: 122 KELGADKLVTGHYVRK--INGDNGPELHMGLDPL---KDQSYFLFATTKEQLEYLDFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K+  R LA + GL++ADK DSQDICFV  G Y +V+ +I    +  G I+H+NG  L
Sbjct: 177 ALTKDETRKLASKFGLEVADKPDSQDICFVPDGNYKNVINKIRPNASESGKILHINGFEL 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GIINYTIGQRRGLG++  EPL+V+ +D NS+ V VGP  +L V    ++++NWL  
Sbjct: 237 GTHSGIINYTIGQRRGLGISYHEPLYVIKIDPNSNIVYVGPESALNVQEFVIKDVNWLA- 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           G  +D   +  +  VK+RS++ P    + +   D + V F   E  VA GQACV Y    
Sbjct: 296 GSLKDG--EKLEVSVKVRSTRPPRLAEISKLEGDRMKVKFLSEEKAVAPGQACVIY---- 349

Query: 373 NEARVLGGGIIS 384
           +  RVLGGG I+
Sbjct: 350 DGTRVLGGGWIT 361


>gi|163747144|ref|ZP_02154500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanibulbus indolifex HEL-45]
 gi|161379705|gb|EDQ04118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanibulbus indolifex HEL-45]
          Length = 380

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/386 (48%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + +   LNSL   K P D RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDQTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D+ DARRV + +   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIQDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G++G          D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GENGPELHAAA---DGNRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T++QL  LRFPLG +  K+  R LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 176 TEEQLDYLRFPLGHLPSKDDTRALAAKYGLVVADKPDSQDICFVPNGDYAAVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV   G +L +H G+I+YTIGQRRGLG+  + +PL+VV LD     V+VGP+  L
Sbjct: 236 ADPGNIVDTEGNVLAKHEGVIHYTIGQRRGLGIGGLADPLYVVKLDAERKEVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              +I +REINWLGD          +   V++RS++ P    ++  +     V+   +E 
Sbjct: 296 ATRKIPVREINWLGDEPLTSR--SEWNITVRVRSTRPPRDAILRPISATEAEVELLTAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  D    R+ GGG I
Sbjct: 354 GVSPGQACVFY--DPESTRIFGGGWI 377


>gi|126462045|ref|YP_001043159.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC
           17029]
 gi|205816923|sp|A3PJ71|MNMA_RHOS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126103709|gb|ABN76387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 379

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/383 (49%), Positives = 246/383 (64%), Gaps = 12/383 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 6   LNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF D
Sbjct: 66  AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++  G  G    + C   D  RDQSYFLF+TT +QL  L
Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GPAGP--ELHCA-ADAARDQSYFLFSTTPEQLAFL 180

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA   GL +ADK DSQDICFV  G Y +V++++  G A  G+IV 
Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIVD 240

Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           L+G++LG H G+I+YTIGQ R      +G+PL+VV LD    +VIVGP+E+L    + +R
Sbjct: 241 LSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPVR 300

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD          ++   K+RS++ P    ++  +D    V+    E GV+ GQAC
Sbjct: 301 EINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQAC 358

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY     ++R+LGGG I    R
Sbjct: 359 VFYA--PGDSRILGGGWIWRGAR 379


>gi|239787342|emb|CAX83819.1| tRNA-specific 2-thiouridylase MnmA [uncultured bacterium]
          Length = 366

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 187/367 (50%), Positives = 241/367 (65%), Gaps = 17/367 (4%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  RV VAMSGGVDSSVVAAL+ ++GY V+G+TLQLY+  +A ++  +CCAGQD+YDAR
Sbjct: 14  PKGARVAVAMSGGVDSSVVAALMHKEGYQVVGITLQLYDHGEAIQKTKTCCAGQDIYDAR 73

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + I   HYV DYE  F+  VI  FA SY  GETP+PCV CN+ +KF DLL   R L 
Sbjct: 74  RVSEKIGFHHYVLDYESIFKEEVIDDFADSYLRGETPIPCVQCNQKIKFRDLLRTARDLD 133

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L TGHY+++      +G+    + +  D  RDQSYFLF+T QQ L  LRFPLG + K
Sbjct: 134 CAALVTGHYVQNI-----NGE----LHQAHDPSRDQSYFLFSTKQQDLNYLRFPLGGIPK 184

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
              R LA E GL+IA+K DSQDICFV  G Y   V ++     + GDIV+L+G+ILG+H 
Sbjct: 185 SQTRILAEEFGLEIANKPDSQDICFVPNGNYAQTVAKLRPEALIAGDIVNLDGKILGQHQ 244

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQRRGLG+A  +PL+VV LD   ++VIVGPR +L V  I ++++NW  D    
Sbjct: 245 GIIHYTIGQRRGLGIASVDPLYVVALDPIHNQVIVGPRSALAVTHIPVQDVNWFVD---L 301

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                GF C VK+RS+   +   VQ  D+    V  ++ E GV+SGQACVFY    +  R
Sbjct: 302 SKYPCGFYCTVKVRSTGAALSAKVQMIDESHALVTLDQPEYGVSSGQACVFY----DGTR 357

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 358 VIGGGWI 364


>gi|77463173|ref|YP_352677.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides 2.4.1]
 gi|123592152|sp|Q3J358|MNMA_RHOS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77387591|gb|ABA78776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 379

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/383 (49%), Positives = 244/383 (63%), Gaps = 12/383 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 6   LNSLGFAKPPAVTRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF D
Sbjct: 66  AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++  G  G        P    RDQSYFLF+TT +QL  L
Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GPAGPELHSAADPA---RDQSYFLFSTTPEQLAFL 180

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA   GL +ADK DSQDICFV  G Y +V++++  G A  G+IV 
Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIVD 240

Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           L+G++LG H G+I+YTIGQ R      +G+PL+VV LD    +VIVGP+E+L    + +R
Sbjct: 241 LSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPVR 300

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD          ++   K+RS++ P    ++  +D    V+    E GV+ GQAC
Sbjct: 301 EINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQAC 358

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY     ++R+LGGG I    R
Sbjct: 359 VFYA--PGDSRILGGGWIWRGAR 379


>gi|15604175|ref|NP_220690.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia prowazekii str.
           Madrid E]
 gi|6226259|sp|Q9ZDM1|MNMA_RICPR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3860867|emb|CAA14767.1| unknown [Rickettsia prowazekii]
 gi|292571906|gb|ADE29821.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia prowazekii Rp22]
          Length = 358

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/367 (49%), Positives = 237/367 (64%), Gaps = 17/367 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ V + 
Sbjct: 4   IVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDYGIAVGKKNACCAGQDIYDAKMVANK 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL++  ++LGAD LA
Sbjct: 64  LGIPHYVLDYENKFKESVIDNFVDSYLHGETPLPCVQCNKSVKFRDLINTAKELGADKLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R       +G     +   +D  +DQSYFLF  T++QL  L FPLG   K   R 
Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDTTKDQSYFLFTITREQLEYLSFPLGGFTKYETRK 178

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + GLDIADK DSQDICFV  G Y  V+ +I       G IVH+NG  LG H+GIINY
Sbjct: 179 LASKFGLDIADKPDSQDICFVPDGNYKTVINKIRPEANTSGKIVHINGFELGEHSGIINY 238

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL--FEDAV 320
           TIGQRRGLG+A  EPL+VV +D +++ V VG   +L VH   ++++NWL D +   E   
Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDHEKLA 298

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           VD     VKIRS++ P    + +  +D + V F   E  VA GQACV Y  +    RVLG
Sbjct: 299 VD-----VKIRSTRPPCHAEISKLCNDRIKVKFLSKEKAVAPGQACVIYAGE----RVLG 349

Query: 380 GGIISGS 386
           GG I+ +
Sbjct: 350 GGWITSN 356


>gi|157825546|ref|YP_001493266.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia akari str. Hartford]
 gi|166235076|sp|A8GMY3|MNMA_RICAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157799504|gb|ABV74758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia akari str. Hartford]
          Length = 365

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 179/367 (48%), Positives = 237/367 (64%), Gaps = 13/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KHSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN +VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNNSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG   K+
Sbjct: 127 SQLATGHYVRK--VSGDNGVE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGWFTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++A K DSQDICFV  G Y  V+  I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVAYKPDSQDICFVPDGNYKSVINTIRPNASESGKIIHINGFALGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    ++++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPEAALHVQEFIIKDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             ++     VKIRS++ P +    +  DD + + F  +E  VA GQACV Y  +    RV
Sbjct: 302 KKLE---VAVKIRSTRPPRLAAISKLGDDKMKIRFLSAEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 355 LGGGWIT 361


>gi|148557644|ref|YP_001265226.1| tRNA-specific 2-thiouridylase MnmA [Sphingomonas wittichii RW1]
 gi|148502834|gb|ABQ71088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas wittichii RW1]
          Length = 463

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/366 (53%), Positives = 246/366 (67%), Gaps = 20/366 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVAMSGGVDSSVVAAL    G + IGVTLQLY+   A  R GSCCAGQD+ DAR V D
Sbjct: 108 RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 167

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++HYVFDYE RFR++VI  FA  YAAG TP+PCV CN+ VKF+DL  + R LGAD L
Sbjct: 168 RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 227

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R    VG  G  R  + R  D  RDQSYFLFATT+ QL  LRFPLG M K  VR
Sbjct: 228 ATGHYVRR--VVGAGG--RAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 283

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL +A K DSQDICFV  G Y  +VKR+    A EG+IV L+G++LGRH G+I+
Sbjct: 284 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 343

Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +T+GQRRG+ +    EPL+VV L+  + R++VGPR +L V    L ++NW+G+G +E  +
Sbjct: 344 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEG-YEGPL 402

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   K+RS   PVP    R +DG  V F++ E GVA GQA V Y  D    RVLGG
Sbjct: 403 T------AKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 448

Query: 381 GIISGS 386
           G I  +
Sbjct: 449 GWIRAT 454


>gi|146277942|ref|YP_001168101.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC
           17025]
 gi|205817026|sp|A4WTT2|MNMA_RHOS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145556183|gb|ABP70796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 378

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/378 (50%), Positives = 243/378 (64%), Gaps = 12/378 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L  DGYDV+GVTLQLY+   A  +KG+CC
Sbjct: 6   LNSLGFAKPPSATRVVVAMSGGVDSSVVAAELAADGYDVVGVTLQLYDHGAALAKKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF D
Sbjct: 66  AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++  G  G    + C   D  RDQSYFLF+TT++QL  L
Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GAAGP--ELHCA-ADAARDQSYFLFSTTREQLDYL 180

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA   GL +ADK DSQDICFV  G Y  V++++  G A  G+IV 
Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAAVIEKLRPGAADPGEIVD 240

Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           L G +LG H G+I+YTIGQ R      +G+PLFVV LD    +VIVGPRE+L    + +R
Sbjct: 241 LAGNVLGAHRGVIHYTIGQRRGLGIGGLGDPLFVVRLDPERRQVIVGPREALSTRIVPVR 300

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD          ++   K+RS++ P    ++  +D    V+    E GV+ GQAC
Sbjct: 301 EINWLGDAPLTSQA--EWQVMAKVRSTRAPREAVIRPISDTEAEVELIAPEDGVSPGQAC 358

Query: 366 VFYTSDSNEARVLGGGII 383
           VF+     ++R+LGGG I
Sbjct: 359 VFHV--PGDSRILGGGWI 374


>gi|205829107|sp|A5VFM2|MNMA_SPHWW RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 378

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 197/366 (53%), Positives = 246/366 (67%), Gaps = 20/366 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVAMSGGVDSSVVAAL    G + IGVTLQLY+   A  R GSCCAGQD+ DAR V D
Sbjct: 23  RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++HYVFDYE RFR++VI  FA  YAAG TP+PCV CN+ VKF+DL  + R LGAD L
Sbjct: 83  RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 142

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R    VG  G  R  + R  D  RDQSYFLFATT+ QL  LRFPLG M K  VR
Sbjct: 143 ATGHYVRR--VVGAGG--RAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 198

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL +A K DSQDICFV  G Y  +VKR+    A EG+IV L+G++LGRH G+I+
Sbjct: 199 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 258

Query: 262 YTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +T+GQRRG+ +    EPL+VV L+  + R++VGPR +L V    L ++NW+G+G +E  +
Sbjct: 259 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEG-YEGPL 317

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   K+RS   PVP    R +DG  V F++ E GVA GQA V Y  D    RVLGG
Sbjct: 318 T------AKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 363

Query: 381 GIISGS 386
           G I  +
Sbjct: 364 GWIRAT 369


>gi|221639030|ref|YP_002525292.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides KD131]
 gi|254811459|sp|B9KR64|MNMA_RHOSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221159811|gb|ACM00791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides KD131]
          Length = 379

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/383 (49%), Positives = 243/383 (63%), Gaps = 12/383 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+CC
Sbjct: 6   LNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGACC 65

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF D
Sbjct: 66  AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + L AD +ATGHYI+ ++  G  G        P    RDQSYFLF+TT +QL  L
Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GPAGPELHCAADPA---RDQSYFLFSTTPEQLAFL 180

Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           RFPLG +  K   R LA   GL +ADK DSQDICFV  G Y +V++++  G A  G+IV 
Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIVD 240

Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           L+G++LG H G+I+YTIGQ R      +G+PL+VV LD    +VIVGP+E+L    + +R
Sbjct: 241 LSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPVR 300

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           EINWLGD          ++   K+RS++      ++  +D    V+    E GV+ GQAC
Sbjct: 301 EINWLGDAPLTSR--SEWQVMAKVRSTRASREAVIRPLSDTEAEVELIAPEDGVSPGQAC 358

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY     ++R+LGGG I    R
Sbjct: 359 VFYA--PGDSRILGGGWIWRGAR 379


>gi|225631290|ref|ZP_03787968.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591011|gb|EEH12215.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 370

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/372 (48%), Positives = 242/372 (65%), Gaps = 19/372 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73
           DK P   + VVAMSGGVDSSV AALL   GY VIGVTLQLY +   A+ RKG+CCAGQD+
Sbjct: 13  DKTPHQTKAVVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDI 72

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN+TVKF DLL VT
Sbjct: 73  YDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATTQ+QL  LRFPLG
Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K  +R LA+   L I++K DSQDICFV +  Y   + ++      +G IV +NG++L
Sbjct: 188 GFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   +I ++E+NWL  
Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371
               +   +G +  VK+RSS       +   D+     V       G++ GQACV Y  +
Sbjct: 305 ----EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDE 360

Query: 372 SNEARVLGGGII 383
               +V+GGG I
Sbjct: 361 ----QVIGGGWI 368


>gi|58698498|ref|ZP_00373403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630917|ref|YP_002727708.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia sp. wRi]
 gi|254811470|sp|C0R4S5|MNMA_WOLWR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58534992|gb|EAL59086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225592898|gb|ACN95917.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia sp. wRi]
          Length = 370

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/372 (48%), Positives = 243/372 (65%), Gaps = 19/372 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73
           DK P  ++ +VAMSGGVDSSV AALL   GY VIGVTLQLY +   A+ RKG+CCAGQD+
Sbjct: 13  DKAPHQIKAIVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDI 72

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN+TVKF DLL VT
Sbjct: 73  YDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATTQ+QL  LRFPLG
Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K  +R LA+   L I++K DSQDICFV +  Y   + ++      +G IV +NG++L
Sbjct: 188 GFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   +I ++E+NWL  
Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371
               +   +G +  VK+RSS       +   D+     V       G++ GQACV Y  +
Sbjct: 305 ----EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKGE 360

Query: 372 SNEARVLGGGII 383
               +V+GGG I
Sbjct: 361 ----QVIGGGWI 368


>gi|51473501|ref|YP_067258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia typhi str. Wilmington]
 gi|73920129|sp|Q68X66|MNMA_RICTY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51459813|gb|AAU03776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia typhi str. Wilmington]
          Length = 358

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/369 (49%), Positives = 239/369 (64%), Gaps = 17/369 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVAMSGGVDSS VAA+L   G+ VIG+TLQLY+   A  +K +CCAG+D+YDA+ V + 
Sbjct: 4   IVVAMSGGVDSSAVAAMLHEQGHHVIGITLQLYDYGIAVGKKNACCAGKDIYDAKMVANK 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV DYE +F+ +VI  F +SY  GETPLPCV CN+ VKF DL++  ++LGAD LA
Sbjct: 64  LGIPHYVLDYENKFKESVIDNFVNSYLHGETPLPCVQCNKLVKFRDLINTAKELGADKLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R       +G     +   +D  +DQSYFLF  T++QL  L FPLG   K   R 
Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDAAKDQSYFLFTITREQLEYLIFPLGGFTKYETRK 178

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + GLD+ADK DSQDICFV  G Y  V+ +I    +  G IVH+NG  LG H+GIINY
Sbjct: 179 LASKFGLDVADKPDSQDICFVPDGNYKTVINKIRPEASTSGKIVHINGFELGEHSGIINY 238

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL--FEDAV 320
           TIGQRRGLG+A  EPL+VV +D +++ V VG   +L VH   ++++NWL D +   E   
Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDNEKLA 298

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           VD     VKIRS++ P    + +  +D + V F  +E  VA GQACV Y  +    RVLG
Sbjct: 299 VD-----VKIRSTRPPCHAEISKLCNDKIKVQFLSAEKAVAPGQACVIYAGE----RVLG 349

Query: 380 GGIISGSKR 388
           GG I+ + R
Sbjct: 350 GGWITRNIR 358


>gi|144899505|emb|CAM76369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 360

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/368 (51%), Positives = 245/368 (66%), Gaps = 17/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVAMSGGVDSS  AALLK  G+DV+GVTLQLY+  +A  R  +CCAG+D++DAR V D
Sbjct: 6   RIVVAMSGGVDSSATAALLKEQGWDVVGVTLQLYDHGQAVCRPNTCCAGKDIHDARTVAD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV D E  F   V+  FA SY  GETP+PCV CN+TVKF DL S+ R LGAD L
Sbjct: 66  VLGIPHYVMDMESTFHADVVDKFAESYIRGETPIPCVLCNQTVKFRDLFSIARDLGADAL 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKKESV 200
           ATGHY++ +     D     IM +  D  RDQSYFLF+TT++QL  LRFPLG  + K+  
Sbjct: 126 ATGHYVQRQ-----DSANGAIMLKGADPGRDQSYFLFSTTREQLEFLRFPLGGFLSKDET 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A    L +A K DSQDICFV  G Y  +V+R+  G    G IVH+ +G+ LGRH GI
Sbjct: 181 RAIAARYNLPVAAKRDSQDICFVPDGDYAGLVQRLKPGAIRPGAIVHVEDGRELGRHQGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+  G+PL+V+ L+   ++V+VGPRE+L   RI +R +NWLGDG   D 
Sbjct: 241 IHYTIGQRKGLGLGGGDPLYVIRLEAEKAQVVVGPREALGRSRITVRGVNWLGDGDGAD- 299

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               F C V++RS++ P+P  V+ +   G  V  +  E GVA GQACVFY  D    RVL
Sbjct: 300 ----FVCQVRVRSTRPPMPARVRLDGQGGGLVMLDMPEQGVAPGQACVFYDGD----RVL 351

Query: 379 GGGIISGS 386
           GGG I G+
Sbjct: 352 GGGWIVGA 359


>gi|296535629|ref|ZP_06897808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264053|gb|EFH10499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseomonas cervicalis ATCC 49957]
          Length = 368

 Score =  345 bits (885), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 234/369 (63%), Gaps = 21/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+VVAMSGGVDSSVVA LLK  G++VIG TLQLY+   A ++KG+CCAGQD++DAR V 
Sbjct: 1   MRIVVAMSGGVDSSVVAGLLKEQGHEVIGATLQLYDHGAAIEKKGACCAGQDIHDARDVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D E RFR+AVI  FA +YA GETP+PCV CN+TVKF DL+ + R LGAD 
Sbjct: 61  DRLGIPHYVLDRERRFRDAVIEDFAEAYARGETPIPCVRCNQTVKFQDLVELARDLGADA 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKKES 199
           LATGHY+R     G+ G   R   R  D  RDQSYFLFATT+ QL   RFPLGD   K  
Sbjct: 121 LATGHYVRR--TEGEAGAELR---RAADPARDQSYFLFATTRAQLEFCRFPLGDYTSKAE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +A+K DSQDICFV QGKY D+V ++      EG I H++G++LG H G+
Sbjct: 176 VRAEALRLGLAVAEKPDSQDICFVPQGKYADLVAKLRPEAVAEGSIEHVDGRVLGTHKGV 235

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             YT+GQ RGLG+A     EPL+V  LD    RV+V PR +L    + + E+NWL     
Sbjct: 236 ARYTVGQGRGLGMASRDGEEPLYVTALDPARKRVVVAPRGALASPEVLVGEVNWL----- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNE 374
            DA      C VK+R+ + P P       +   + V  E+  +  A GQ CV Y  D   
Sbjct: 291 IDAPAVPLPCQVKLRAREMPQPAIAHWQPESGLLRVVLEQPAI-AAPGQGCVLYDGD--- 346

Query: 375 ARVLGGGII 383
            RVLGGG I
Sbjct: 347 -RVLGGGFI 354


>gi|42521055|ref|NP_966970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81652123|sp|Q73FR5|MNMA_WOLPM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42410796|gb|AAS14904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 370

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/372 (48%), Positives = 242/372 (65%), Gaps = 19/372 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73
           DK P   + VVAMSGGVDSSV AALL   GY V+GVTLQLY +   A+ RKG+CCAGQD+
Sbjct: 13  DKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGVTLQLYGTDGNANARKGACCAGQDI 72

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN+TVKF DLL VT
Sbjct: 73  YDAKRVAESVGFPHYLLNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATTQ+QL  LRFPLG
Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K  +R LA+   L I++K DSQDICFV +  Y   + ++      +G IV +NG++L
Sbjct: 188 GFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   +I ++E+NWL  
Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371
               +   +G +  VK+RSS       +   D+     V       G++ GQACV Y  +
Sbjct: 305 ----EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDE 360

Query: 372 SNEARVLGGGII 383
               +V+GGG I
Sbjct: 361 ----QVIGGGWI 368


>gi|99035878|ref|ZP_01314930.1| hypothetical protein Wendoof_01000225 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 370

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/372 (48%), Positives = 242/372 (65%), Gaps = 19/372 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73
           DK P   + VVAMSGGVDSSV AALL   GY V+G+TLQLY +   A+ RKG+CCAGQD+
Sbjct: 13  DKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGMTLQLYGTDGNANARKGACCAGQDI 72

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN+TVKF DLL VT
Sbjct: 73  YDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATTQ+QL  LRFPLG
Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K  +R LA+   L I++K DSQDICFV +  Y   + ++      +G IV +NG++L
Sbjct: 188 GFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   +I ++E+NWL  
Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371
               +   +G +  VK+RSS       +   D+     V       G++ GQACV Y  +
Sbjct: 305 ----EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDE 360

Query: 372 SNEARVLGGGII 383
               +V+GGG I
Sbjct: 361 ----QVIGGGWI 368


>gi|83312118|ref|YP_422382.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Magnetospirillum magneticum AMB-1]
 gi|123541366|sp|Q2W2V2|MNMA_MAGMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82946959|dbj|BAE51823.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Magnetospirillum magneticum AMB-1]
          Length = 373

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/388 (50%), Positives = 246/388 (63%), Gaps = 22/388 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----RKASKR 63
           +N+LD+DK P   RVVVAMSGGVDSS VAALLK  GYDV+GVTLQLY+         + R
Sbjct: 1   MNTLDIDKPPSSTRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
             +CCAG+D++DAR V D + + HYV D+EE FR  V+  FA +Y    TP+PC++CNRT
Sbjct: 61  PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEARTPVPCIECNRT 120

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL V + LG D LATGHY+R R   G DG     +    D  RDQSYFLFATT+ 
Sbjct: 121 VKFRDLLGVAKDLGGDALATGHYVRRR--PGVDGPE---LWTGRDPGRDQSYFLFATTRD 175

Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           QL  LRFPLGDM  KE  R +A    L +A K DSQDICFV  G Y  +V R++   A  
Sbjct: 176 QLDFLRFPLGDMAGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPDAARP 235

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G+IV   G++LGRH G+I+YTIGQRRGLG+  G PL+VV L+  + RV+VG RE L    
Sbjct: 236 GEIVDTAGKVLGRHGGLIHYTIGQRRGLGLGGGPPLYVVALEPETGRVVVGSREDLNCLT 295

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           I +  +NWLG    E       +  VK+RS++   P  ++R + D   V  +  E GVA 
Sbjct: 296 IQVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLSGDRAQVILDHPEQGVAP 349

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389
           GQACVFY  +    RVLGGG I  S+ +
Sbjct: 350 GQACVFYQGE----RVLGGGWICPSREA 373


>gi|162148152|ref|YP_001602613.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|205816818|sp|A9HMI3|MNMA_GLUDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161786729|emb|CAP56312.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 361

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/367 (50%), Positives = 245/367 (66%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV 
Sbjct: 1   MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D E RFR +VI  FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ 
Sbjct: 60  DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGIARDLGAEA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G DG     + RP+D  RDQS+FLFATT+QQL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRQQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y  VV+ +   +A EG+IV  +G+++GRH+G+
Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             +T+GQ R LG A    G    VV +D  S RV++GPR    V  + LR++NWL D   
Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWLIDPPE 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D      +C V+IR+ +   P  V+R  DG  V  +++ +  A GQACV Y    + +R
Sbjct: 295 GD-----LRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLY----DGSR 344

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 345 VLGGGFI 351


>gi|189183712|ref|YP_001937497.1| tRNA-specific 2-thiouridylase MnmA [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180483|dbj|BAG40263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 369

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/374 (47%), Positives = 236/374 (63%), Gaps = 13/374 (3%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+L    +   +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN   A  RKG+CCAGQ
Sbjct: 2   LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDA+ V + + + HYV +Y+++F+ +VI  F  SY  GETPLPCV CN++VKF DLL+
Sbjct: 62  DIYDAKFVANQLQIPHYVLNYKDKFKKSVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + L AD L TGHY+R R+    D      + + +D ++DQSYFLFATT+ QL  L FP
Sbjct: 122 FAKDLQADALVTGHYVR-RI----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG+M K+  R  A   GL IADK DSQDICFV  G Y +VV R+       G IVH++G 
Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGSYHNVVARLKPNAKKPGKIVHIDGY 236

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ILG H GIIN+TIGQRR +G++  +PL+V+ +D   + V VGP   L      +  +NWL
Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           G G   + +V+     VK+RS+   V       ++  V V   + E  +A GQACV Y  
Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVQAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353

Query: 371 DSNEARVLGGGIIS 384
           D     VLGGG I+
Sbjct: 354 D----LVLGGGWIA 363


>gi|326386236|ref|ZP_08207860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209461|gb|EGD60254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 401

 Score =  342 bits (877), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 187/383 (48%), Positives = 241/383 (62%), Gaps = 19/383 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL +  +D R+VVAMSGGVDSSVVAAL  R G +VIGVTLQLY+   A+ RKG+CCAG+
Sbjct: 30  FDLPRPAQDCRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAATGRKGACCAGE 89

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D +  +HYVFD+E  FR AV+  FA  Y +G TP+PC+ CN   KF+DL++
Sbjct: 90  DIRDARAVADRLGFAHYVFDHESDFREAVVERFADDYLSGRTPIPCIRCNMGPKFTDLMA 149

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R R+      +    + R +D  RDQSYFL+ TT +QL  LRFP
Sbjct: 150 MARDLGADCLATGHYVR-RVMTATGPE----LHRAVDPARDQSYFLYGTTDEQLAFLRFP 204

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K  VR +A E+GL +A K DSQDICFV  G Y  VV  I    ++ GDIVH   G
Sbjct: 205 LGGLAKPDVRRIAGELGLGVAAKPDSQDICFVPDGDYARVVSAIRPEGSVAGDIVHAATG 264

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           ++LG+H GII+YT+GQRRGL +    EPL+VV LD  + RV+VGP+  L V R ++ E N
Sbjct: 265 EVLGQHKGIIHYTVGQRRGLEIGGQAEPLYVVALDAPARRVLVGPKAMLAVDRAHIVETN 324

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDDGVYVDFEKSEVGVASGQACV 366
            +G     D  +       K+RS   PVPV V+          + F   E GVA GQA V
Sbjct: 325 RIGPMPGPDEALT-----AKVRSLAKPVPVAVEGPFGEGAATTIRFFAPEYGVAPGQAAV 379

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D    RV+GGG I  ++ +
Sbjct: 380 IYAGD----RVVGGGWIESTENA 398


>gi|148285130|ref|YP_001249220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Orientia tsutsugamushi str. Boryong]
 gi|205816896|sp|A5CFJ6|MNMA_ORITB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146740569|emb|CAM81183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Orientia tsutsugamushi str. Boryong]
          Length = 369

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/374 (47%), Positives = 236/374 (63%), Gaps = 13/374 (3%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+L    +   +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN   A  RKG+CCAGQ
Sbjct: 2   LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDA+ V + + + HYV +Y+++F+ +VI  F  SY  GETPLPCV CN++VKF DLL+
Sbjct: 62  DIYDAKFVANQLQIPHYVLNYKDKFKESVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + L AD L TGHY+R R+    D      + + +D ++DQSYFLFATT+ QL  L FP
Sbjct: 122 FAKDLQADALVTGHYVR-RI----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG+M K+  R  A   GL IADK DSQDICFV  G Y +VV ++       G IVH++G 
Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGAYHNVVAKLKPNAKKPGKIVHIDGY 236

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ILG H GIIN+TIGQRR +G++  +PL+V+ +D   + V VGP   L      +  +NWL
Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           G G   + +V+     VK+RS+   V       ++  V V   + E  +A GQACV Y  
Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVRAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353

Query: 371 DSNEARVLGGGIIS 384
           D     VLGGG I+
Sbjct: 354 D----LVLGGGWIA 363


>gi|46202527|ref|ZP_00053063.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 373

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/383 (50%), Positives = 246/383 (64%), Gaps = 22/383 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----RKASKR 63
           +NSLD+DK     RVVVAMSGGVDSS VAALLK  GYDV+GVTLQLY+         + R
Sbjct: 1   MNSLDIDKPASATRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
             +CCAG+D++DAR V D + + HYV D+EE FR  V+  FA +Y   +TP+PC++CNRT
Sbjct: 61  PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEAKTPVPCIECNRT 120

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL V + LGAD LATGHY+R R      G +   M    D  RDQSYFL+ATT+ 
Sbjct: 121 VKFRDLLGVAKDLGADALATGHYVRRR-----SGPQGPEMWAGRDPGRDQSYFLYATTRA 175

Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           QL  LRFPLGDM  KE  R +A    L +A K DSQDICFV  G Y  +V R++   A  
Sbjct: 176 QLDFLRFPLGDMSGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPEAARP 235

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G+IV  +G++LGRH G+I+YTIGQRRGLG+  G PL+VV L+  + RV+VG R+ L+   
Sbjct: 236 GEIVDSSGKVLGRHEGLIHYTIGQRRGLGLGGGPPLYVVALEPETDRVVVGGRQDLDCPV 295

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
           + +  +NWLG    E       +  VK+RS++   P  ++R  +G   V  +  E GVA 
Sbjct: 296 VPVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLPNGRAEVILDHPEQGVAP 349

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQACVFY  +    RVLGGG IS
Sbjct: 350 GQACVFYQGE----RVLGGGWIS 368


>gi|209542792|ref|YP_002275021.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530469|gb|ACI50406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 361

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/367 (50%), Positives = 245/367 (66%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV 
Sbjct: 1   MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D E RFR +VI  FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ 
Sbjct: 60  DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGMARDLGAEA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G DG     + RP+D  RDQS+FLFATT++QL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRRQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y  VV+ +   +A EG+IV  +G+++GRH+G+
Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             +T+GQ R LG A    G    VV +D  S RV++GPR    V  + LR++NWL D   
Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWLIDPPE 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D      +C V+IR+ +   P  V+R  DG  V  +++ +  A GQACV Y    + +R
Sbjct: 295 GD-----LRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLY----DGSR 344

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 345 VLGGGFI 351


>gi|58584415|ref|YP_197988.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418731|gb|AAW70746.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contain the PP-loop ATPase domain
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 385

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/373 (47%), Positives = 240/373 (64%), Gaps = 20/373 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD 72
           DK P   + VVAMSGGVDSSV A LL R GY VIGVTLQLY +     +++KG CCAGQD
Sbjct: 27  DKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQD 86

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +YDA+RV +     HY+ +YEE F+  VI  FA +Y  G+TP+PC+ CN+TVKF DLL V
Sbjct: 87  IYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQV 146

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           TR LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATT++QL  LRFPL
Sbjct: 147 TRNLGADVLITGHYVR-RLEKNGEVK----LCRGIDKSKDQSYFLFATTKEQLKLLRFPL 201

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G   K +VR LAR   L I++K DSQDICFV +  Y   + ++      +G IV +NG++
Sbjct: 202 GGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKV 260

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG HNGI+N+T+GQR+GLG+A  EPL+VV ++  ++ ++VGP  +L   +I ++E+NWL 
Sbjct: 261 LGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWL- 319

Query: 313 DGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +    G +  VK+RS  S     ++  +  +  YV        ++ GQACV Y  
Sbjct: 320 -----EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKD 374

Query: 371 DSNEARVLGGGII 383
           +    +V+GGG I
Sbjct: 375 E----QVIGGGWI 383


>gi|254456653|ref|ZP_05070082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083655|gb|EDZ61081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 372

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/378 (44%), Positives = 242/378 (64%), Gaps = 11/378 (2%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             LNS+ ++K P+D  VVVAMSGGVDSS VA ++K +GY VIG+TL+LY+  K   +   
Sbjct: 3   NELNSIGINKKPEDTTVVVAMSGGVDSSTVAGMMKNEGYKVIGITLKLYDDGKEVAKSKQ 62

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+GQD+ DA+RV   +N+ H +  Y+++F+  VI  F  SY  GETP+PCV CN+TVKF
Sbjct: 63  CCSGQDIMDAKRVAHKLNIEHKILYYQDKFKQGVIDNFVDSYLNGETPIPCVQCNQTVKF 122

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DL  V+++L AD L TGHY++S             M R +D  RDQSYFLF TT++QL 
Sbjct: 123 KDLFEVSKELNADALVTGHYVKSIT-----SNNTTNMYRAIDENRDQSYFLFNTTREQLD 177

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG M K+  R++A+++ L++ADK DSQDICFV  G Y  V+++       +G+I 
Sbjct: 178 YLRFPLGGMLKDETREIAKDLDLNVADKPDSQDICFVPNGDYASVIRKFRPDSFQKGNIK 237

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           +L+G ++G H+GIIN+TIGQR+G+ V+  EPL+V+ ++  ++ ++VGP+E L    I L+
Sbjct: 238 NLDGDVIGVHDGIINFTIGQRKGIKVSDKEPLYVLKINSENNEIVVGPKEKLGKKSITLK 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           ++N L D       +     FVK+RS+   +   +   DD    V     E G++ GQAC
Sbjct: 298 DLNLLTDKKELKKNI-----FVKVRSTGSLLEAKIDLKDDNTANVSLISPEDGISPGQAC 352

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D    +VLGGG I
Sbjct: 353 VFYNKDQYGHKVLGGGWI 370


>gi|190571202|ref|YP_001975560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018602|ref|ZP_03334410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|229487430|sp|B3CLZ0|MNMA_WOLPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190357474|emb|CAQ54908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995553|gb|EEB56193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 368

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/371 (46%), Positives = 244/371 (65%), Gaps = 19/371 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           DK P   + +VAMSGGVDSSV AALL   GY+VIGVTLQLY S   + RKG+CCAGQD+Y
Sbjct: 13  DKAPHQTKAIVAMSGGVDSSVAAALLYNLGYEVIGVTLQLYGS-DGNARKGACCAGQDIY 71

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V +++   HY+ +YEE F+  VI  FA++Y  GETP+PCV CN+TVKF DLL VT+
Sbjct: 72  DAKYVAESVGFPHYILNYEEIFKKEVIEDFANTYMRGETPIPCVRCNQTVKFRDLLQVTK 131

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGADVL TGHY+R    + ++G+ +  +CR +D  +DQSYFLFATT++QL  LRFPLG 
Sbjct: 132 NLGADVLVTGHYVRR---LEENGEVK--LCRSIDKSKDQSYFLFATTEEQLKLLRFPLGG 186

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K  +R LA+  GL I++K DSQDICFV +  Y   + ++      +G IV ++G++LG
Sbjct: 187 FYKSDIRKLAKYFGLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDIHGKVLG 245

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H+GI+N+T+GQRRGL +A  EPL+V+ ++  ++ V+VGP  +L   +I ++E+NWL   
Sbjct: 246 EHSGIVNFTVGQRRGLCIAHNEPLYVIKINTENNEVVVGPINALMQKKILVKELNWL--- 302

Query: 315 LFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              +   +G +  VK+RSS       ++     +   V       G++ GQACV Y  + 
Sbjct: 303 ---EQPKEGMEVTVKLRSSHAGSSATIYSTDEKNKACVILNDDYFGISPGQACVAYKGE- 358

Query: 373 NEARVLGGGII 383
              +V+GGG I
Sbjct: 359 ---QVIGGGWI 366


>gi|205829099|sp|Q5GTC8|MNMA_WOLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/373 (47%), Positives = 240/373 (64%), Gaps = 20/373 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD 72
           DK P   + VVAMSGGVDSSV A LL R GY VIGVTLQLY +     +++KG CCAGQD
Sbjct: 13  DKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQD 72

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +YDA+RV +     HY+ +YEE F+  VI  FA +Y  G+TP+PC+ CN+TVKF DLL V
Sbjct: 73  IYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQV 132

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           TR LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATT++QL  LRFPL
Sbjct: 133 TRNLGADVLITGHYVR-RLEKNGEVK----LCRGIDKSKDQSYFLFATTKEQLKLLRFPL 187

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G   K +VR LAR   L I++K DSQDICFV +  Y   + ++      +G IV +NG++
Sbjct: 188 GGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKV 246

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG HNGI+N+T+GQR+GLG+A  EPL+VV ++  ++ ++VGP  +L   +I ++E+NWL 
Sbjct: 247 LGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWL- 305

Query: 313 DGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +    G +  VK+RS  S     ++  +  +  YV        ++ GQACV Y  
Sbjct: 306 -----EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKD 360

Query: 371 DSNEARVLGGGII 383
           +    +V+GGG I
Sbjct: 361 E----QVIGGGWI 369


>gi|332187411|ref|ZP_08389149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. S17]
 gi|332012572|gb|EGI54639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. S17]
          Length = 365

 Score =  338 bits (868), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/374 (49%), Positives = 236/374 (63%), Gaps = 22/374 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             L  +P+  R+VVAMSGGVDSSVVAAL    G + IGVTLQLY+  +A  R G+CCAG+
Sbjct: 4   FQLGGDPRAKRIVVAMSGGVDSSVVAALAHATGAETIGVTLQLYDHGEAVGRAGACCAGR 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR VCD + ++HYVFD+E+ FR  V+  FA  Y AG TP+PCV CN   KF+DLL 
Sbjct: 64  DIRDARAVCDRLGIAHYVFDHEDSFRTQVVDRFADEYLAGRTPIPCVQCNMGPKFTDLLK 123

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R       +G     + R  D  RDQSYFLFATTQ+QL  LRFP
Sbjct: 124 LARDLGADCLATGHYVRRV-----EGTHGAELHRGADPARDQSYFLFATTQEQLNFLRFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+ L +A K DSQDICFV  G Y  +VK++       GDI+ L+G 
Sbjct: 179 LGALPKSRVREIAAELSLSVAAKPDSQDICFVPDGDYAGLVKKLRPEADTRGDIIDLSGA 238

Query: 252 ILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            LG H G+I+YT+GQRRGL +    EPL+VV L+ ++ RV+VGPR +L V    L  +N 
Sbjct: 239 KLGEHRGLIHYTVGQRRGLEIGGSPEPLYVVRLEPDTKRVVVGPRTALAVEAARLTGMNI 298

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           LG        +DG   F K+RS   PVP  +     G  + F+  E GV+ GQA V Y  
Sbjct: 299 LGP-------LDG-PLFAKVRSMAKPVPARMV----GDRLVFDAPEYGVSPGQAAVLYDG 346

Query: 371 DSNEARVLGGGIIS 384
           D    RVLGGG I+
Sbjct: 347 D----RVLGGGWIA 356


>gi|258543643|ref|YP_003189076.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634721|dbj|BAI00697.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637777|dbj|BAI03746.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640831|dbj|BAI06793.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643886|dbj|BAI09841.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646941|dbj|BAI12889.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649994|dbj|BAI15935.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652984|dbj|BAI18918.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656038|dbj|BAI21965.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 360

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/367 (49%), Positives = 244/367 (66%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR A+K KG+CCAGQD+ DAR V 
Sbjct: 1   MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGAAK-KGACCAGQDIRDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +   HYV D E RF+++VI  FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD 
Sbjct: 60  DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G DG     + RP D +RDQS+FLFATT+ QL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRR--VEGPDGAE---LHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y D+V++++  +A  G+IV   GQI+G+H G+
Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           + +T+GQ + LG A    GE   VV ++    RVI+GPRE   V  + +R++NWL     
Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRDVNWL----- 289

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            DA  +G  C V++R+ ++P    V    DG  V  E+  +  A GQACVFY       R
Sbjct: 290 VDAPPEGLVCRVQMRAREEPRAARVVPTPDGAMVYLEEPAM-PAPGQACVFYQG----TR 344

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 345 ILGGGFI 351


>gi|330993151|ref|ZP_08317089.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1]
 gi|329759921|gb|EGG76427.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1]
          Length = 376

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/388 (47%), Positives = 251/388 (64%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K  + MR++VAMSGGVDSSVVAA L  +G++VIG TLQLY+SR+++K KG+CCAG+D+
Sbjct: 4   IGKWNQAMRILVAMSGGVDSSVVAARLVDEGHEVIGATLQLYDSRESTK-KGACCAGRDI 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DARRV D + + HYV D E RF ++VI  FA +YAAGETP+PCV CN+ VKF+DLL + 
Sbjct: 63  HDARRVADRLGIPHYVIDAERRFHDSVIGTFADAYAAGETPVPCVACNQGVKFTDLLGMA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LG D +ATGHY+R     G DG     M RP+D  RDQS+FLFATT+ QL  LRFPLG
Sbjct: 123 RELGVDAMATGHYVRR--VEGPDGPE---MHRPVDAGRDQSWFLFATTRDQLDFLRFPLG 177

Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           DM  K +VR  A   GL +A K DSQD+CFV  G Y  +V+++   +   G+IV  +GQ+
Sbjct: 178 DMPDKAAVRAEAERFGLAVAAKPDSQDLCFVTDGSYAGLVEKLRPDVTGAGEIVDQSGQV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +GRH G+  YT+GQ R LG A    G    VV +   S RV++GPR       + LR++N
Sbjct: 238 VGRHEGVTRYTVGQSRRLGNAAMRDGARQMVVGIQPASRRVVIGPRAQAVTRTLMLRDMN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           W    L      DG +C V+IR+ +   P  + Q  + G  V+ ++  V  A GQACV Y
Sbjct: 298 W----LVSPPGPDGLRCAVQIRAREAARPATIWQAGNGGARVELDEGAV-PAPGQACVLY 352

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
               + +RVLGGG I   +R D+ E+ +
Sbjct: 353 ----DGSRVLGGGFI---RRPDSEEKGV 373


>gi|296282975|ref|ZP_06860973.1| tRNA-specific 2-thiouridylase MnmA [Citromicrobium bathyomarinum
           JL354]
          Length = 384

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/385 (47%), Positives = 234/385 (60%), Gaps = 21/385 (5%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           N  DL +   + R+VVAMSGGVDSSVVAAL  + G DV+G+TLQLY+   A+ RKG+CCA
Sbjct: 15  NLFDLPRPASECRIVVAMSGGVDSSVVAALAAKTGADVVGITLQLYDYGAATGRKGACCA 74

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D+ DAR V D + ++HYVFD+E  FR +V+  FA  Y AG TP+PC+ CN   KF+DL
Sbjct: 75  GDDIADARAVADRLGIAHYVFDHESAFRESVVEQFADDYLAGRTPVPCIRCNMGPKFTDL 134

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L++ R+L AD LATGHY+R  +  G        + R  D  RDQSYFLFATTQ QL  LR
Sbjct: 135 LTMARELDADCLATGHYVRRVMGAGGS-----ELHRAEDAGRDQSYFLFATTQPQLDFLR 189

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248
           FPLG M K  VR LA E GL  A K DSQDICFV  G Y  +VK++    A  G IVH  
Sbjct: 190 FPLGGMPKSQVRALAEEAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGATPGAIVHAR 249

Query: 249 NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            G+ LG H G++++T+GQRRGL +    EPL+VV LD NS+ V VGP+  L      L +
Sbjct: 250 TGETLGEHAGVVHFTVGQRRGLEIGGQPEPLYVVELDANSAEVRVGPKAMLATASAQLVD 309

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQA 364
            N +G        +       K+RS   PVPV ++ +      V + FE  E GVA GQA
Sbjct: 310 TNRIGP-------LPDLPLTAKVRSLAKPVPVTLEGSLGEGSPVTITFETPEYGVAPGQA 362

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
            V Y  D    R +GGG I  ++ +
Sbjct: 363 AVIYAGD----RAVGGGWIDSTRPA 383


>gi|254796826|ref|YP_003081663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia risticii str. Illinois]
 gi|254590056|gb|ACT69418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia risticii str. Illinois]
          Length = 368

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 175/370 (47%), Positives = 240/370 (64%), Gaps = 15/370 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVY 74
           K  +D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+ NS      + +CCAG D++
Sbjct: 11  KASRDIKVMVAMSGGVDSSTVAAYLHRAGYKVIGVTLQLHSNSTSTQTNRKTCCAGSDIF 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+RV       HYV + EE FR  VI  FA SY  GETP+PCV CN+TVKF DL+ + +
Sbjct: 71  DAKRVAAQFGFLHYVVNMEETFRKEVIEDFAKSYLRGETPIPCVKCNQTVKFRDLMKIAK 130

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            L  D L TGHY+R RL   +  +    + + +D  +DQSYFLF TT++QL  LRFPLG+
Sbjct: 131 NLSVDALVTGHYVR-RLTTTNGVE----LHKGIDPSKDQSYFLFNTTREQLEFLRFPLGN 185

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           +KK   RDLAR++ +DI++K +SQDICFV    Y DV+K+        G I+  NG++LG
Sbjct: 186 LKKSETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQKPGKILSTNGEVLG 245

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            HNG I+YTIGQR GL ++   PL+VV +D  ++ +IVG R+ L+   +Y++E+NWL DG
Sbjct: 246 THNGTIHYTIGQRHGLQLSSPTPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWL-DG 304

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSN 373
                +  G +C VK+RS  D V  ++  + D + V   E+ +  +A GQACV Y    +
Sbjct: 305 ---KELTAGLECEVKLRSGADTVKGYLYPSSDLLKVSLAEEPKCAIAPGQACVMY----H 357

Query: 374 EARVLGGGII 383
            ++VLGGG I
Sbjct: 358 GSKVLGGGWI 367


>gi|296114840|ref|ZP_06833488.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978546|gb|EFG85276.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 358

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/367 (49%), Positives = 243/367 (66%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV 
Sbjct: 1   MRILVAMSGGVDSSVVAARLVEEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++HYV D E RFR++VI  FA +YA GETP+PCV CN+ VKF+DLL + R LG D 
Sbjct: 60  DRLGIAHYVIDAERRFRDSVIETFADAYAEGETPVPCVACNQGVKFTDLLGMARDLGVDA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R R+    +G +   + RP+D  RDQS+FLFATT QQL  LRFPLGDM  K++
Sbjct: 120 MATGHYVR-RI----EGPQGVELHRPVDAGRDQSWFLFATTLQQLGFLRFPLGDMPDKDA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CF+  G Y  +V+++    +  G+IV L+G ++G H G+
Sbjct: 175 VRAEAERFGLAVAGKPDSQDLCFIPDGSYARLVEKLRPQTSGAGEIVDLSGNVVGTHEGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             YT+GQ R LG A    GE   VV ++    RV++GPR       + LR +NWL     
Sbjct: 235 ARYTVGQSRRLGDATMQGGERQMVVGIEPGRRRVVIGPRTQGVTRELRLRNMNWL----- 289

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +    G +C V+IR+ +   P  V+R +DG  V  +++ V  A GQACV Y    +  R
Sbjct: 290 VEPPAQGLRCSVQIRAREAVRPATVRRTEDGASVLLDEAAV-PAPGQACVMY----DGTR 344

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 345 VLGGGFI 351


>gi|241116858|ref|XP_002401642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
 gi|215493186|gb|EEC02827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
          Length = 343

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/350 (48%), Positives = 226/350 (64%), Gaps = 13/350 (3%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
           VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ V + + + HYV  YE +
Sbjct: 2   VAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANKLGIPHYVLGYESK 61

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGAD LATGHY+R     GD
Sbjct: 62  FKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGADKLATGHYVRK--INGD 119

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           +G     +   +D  +DQSYFLF TT++QL  L FPLG + K+  R LA + GL++ADK 
Sbjct: 120 NGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKDETRKLASKFGLEVADKP 176

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275
           DSQDICFV  G Y  V+ +I  G +  G IVH+NG  LG H+GIINYTIGQRRGLG+A  
Sbjct: 177 DSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSGIINYTIGQRRGLGIAYN 236

Query: 276 EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335
           +PL+VV +D   + V VGP  +L V    ++++NWL D   E    +  +  VKIRS++ 
Sbjct: 237 KPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ETKDNEKLEVAVKIRSTRP 293

Query: 336 PVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           P    + +  DD + + F   E  VA GQACV Y  +    RVLGGG I+
Sbjct: 294 PRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RVLGGGWIT 339


>gi|56416599|ref|YP_153673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma marginale str. St. Maries]
 gi|222474965|ref|YP_002563380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Florida]
 gi|269958985|ref|YP_003328774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma centrale str. Israel]
 gi|81359210|sp|Q5PBB1|MNMA_ANAMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56387831|gb|AAV86418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma marginale str. St. Maries]
 gi|222419101|gb|ACM49124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Florida]
 gi|269848816|gb|ACZ49460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma centrale str. Israel]
          Length = 387

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/383 (46%), Positives = 245/383 (63%), Gaps = 13/383 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   +  L+ L   K P++  VVVAMSGGVDSSVVAALL   GY VIG T+QL++S  A
Sbjct: 9   MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 68

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           S  K SCC   D+YDA+RV  T+   HYV DYEE FR  VI  F +SY  GETP+PCV C
Sbjct: 69  SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 127

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF D+L   R +G DV+ATGHY+R     G+     + + R  D ++DQSYFLF+ 
Sbjct: 128 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGE-----QQILRGKDPQKDQSYFLFSV 182

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T +QL  LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV +  Y +V++ ++    
Sbjct: 183 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 242

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IVH++G++LG H+GI N+T+GQRRGL ++   PL+VV LD   + V+VGP+ +L  
Sbjct: 243 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 302

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             ++++ +NWL D    +    G     ++RSS   V   +  + DG      + +  V+
Sbjct: 303 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCVVS 359

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQACV Y    ++ R+LGGG I
Sbjct: 360 PGQACVLY----DKERLLGGGWI 378


>gi|294677198|ref|YP_003577813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter capsulatus SB 1003]
 gi|294476018|gb|ADE85406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter capsulatus SB 1003]
          Length = 354

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/361 (51%), Positives = 237/361 (65%), Gaps = 14/361 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVAA+LK +GYDVIGVTLQLY+   A  +KG+CCAGQD++DARRV + +N  
Sbjct: 1   MSGGVDSSVVAAMLKEEGYDVIGVTLQLYDHGAALAKKGACCAGQDIHDARRVAEAMNFP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF DLL   R L AD +ATGHY
Sbjct: 61  HYVLDYENTFREAVIEEFADAYLAGATPVPCIRCNERVKFKDLLETARDLDADCMATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205
           I+ +L  G  G        PM   RDQSYFLF+TT +QL  LRFPLG +  K   R LA 
Sbjct: 121 IQRKL--GAHGPELHSAADPM---RDQSYFLFSTTPEQLAFLRFPLGHLPSKAETRKLAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
             GL +ADK DSQDICFV   +  +  +++  G A  G+IV L G++LG H G+I+YTIG
Sbjct: 176 RFGLIVADKPDSQDICFVPT-ELCERHRKLRPGAADPGEIVDLAGKVLGHHKGVIHYTIG 234

Query: 266 QRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323
           QRRGLG+      PL+VV LD ++ RVIVGP+E+L    + + EINWLGD  FE      
Sbjct: 235 QRRGLGIGGLGDHPLYVVKLDPDTRRVIVGPKEALATRLLRVAEINWLGDEPFESH--PE 292

Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
            +  V+IRS++ P P  ++  +     V+  + E GV+ GQACVFY ++ +  R+ GGG 
Sbjct: 293 REVSVRIRSTRAPRPAILRPLSATTAEVELIEPEEGVSPGQACVFYETEGS--RIFGGGW 350

Query: 383 I 383
           I
Sbjct: 351 I 351


>gi|329113810|ref|ZP_08242581.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001]
 gi|326696820|gb|EGE48490.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001]
          Length = 360

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/367 (49%), Positives = 243/367 (66%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR A+K KG+CCAGQD+ DAR V 
Sbjct: 1   MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGAAK-KGACCAGQDIRDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +   HYV D E RF+++VI  FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD 
Sbjct: 60  DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G +G     + RP D +RDQS+FLFATT+ QL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRR--VEGPEGAE---LHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y D+V++++  +A  G+IV   GQI+G+H G+
Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           + +T+GQ + LG A    GE   VV ++    RVI+GPRE   V  + +R +NWL     
Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRNVNWL----- 289

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            DA  +G  C V++R+ ++P    V    +G  V  E+  +  A GQACVFY       R
Sbjct: 290 VDAPPEGLFCRVQMRAREEPRAARVVPTPEGAMVYLEEPAM-PAPGQACVFYQG----TR 344

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 345 ILGGGFI 351


>gi|255002942|ref|ZP_05277906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Puerto Rico]
 gi|255004068|ref|ZP_05278869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Virginia]
          Length = 379

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/383 (46%), Positives = 245/383 (63%), Gaps = 13/383 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   +  L+ L   K P++  VVVAMSGGVDSSVVAALL   GY VIG T+QL++S  A
Sbjct: 1   MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           S  K SCC   D+YDA+RV  T+   HYV DYEE FR  VI  F +SY  GETP+PCV C
Sbjct: 61  SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF D+L   R +G DV+ATGHY+R     G+     + + R  D ++DQSYFLF+ 
Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGE-----QQILRGKDPQKDQSYFLFSV 174

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T +QL  LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV +  Y +V++ ++    
Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IVH++G++LG H+GI N+T+GQRRGL ++   PL+VV LD   + V+VGP+ +L  
Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             ++++ +NWL D    +    G     ++RSS   V   +  + DG      + +  V+
Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCVVS 351

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQACV Y    ++ R+LGGG I
Sbjct: 352 PGQACVLY----DKERLLGGGWI 370


>gi|254994811|ref|ZP_05277001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Mississippi]
          Length = 379

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/383 (46%), Positives = 245/383 (63%), Gaps = 13/383 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   +  L+ L   K P++  VVVAMSGGVDSSVVAALL   GY VIG T+QL++S  A
Sbjct: 1   MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           S  K SCC   D+YDA+RV  T+   HYV DYEE FR  VI  F +SY  GETP+PCV C
Sbjct: 61  SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF D+L   R +G DV+ATGHY+R     G+     + + R  D ++DQSYFLF+ 
Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGE-----QQILRGKDPQKDQSYFLFSV 174

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T +QL  LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV +  Y +V++ ++    
Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IVH++G++LG H+GI N+T+GQRRGL ++   PL+VV LD   + V+VGP+ +L  
Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNAVVVGPQSALMK 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             ++++ +NWL D    +    G     ++RSS   V   +  + DG      + +  V+
Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCVVS 351

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQACV Y    ++ R+LGGG I
Sbjct: 352 PGQACVLY----DKERLLGGGWI 370


>gi|85375520|ref|YP_459582.1| tRNA-specific 2-thiouridylase MnmA [Erythrobacter litoralis
           HTCC2594]
 gi|122543295|sp|Q2N6A6|MNMA_ERYLH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84788603|gb|ABC64785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 184/383 (48%), Positives = 238/383 (62%), Gaps = 21/383 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL +   + R+VVAMSGGVDSSVVAAL    G +VIG+TLQLY+   A+ RKG+CCAG 
Sbjct: 17  FDLPRPAAESRIVVAMSGGVDSSVVAALAHASGAEVIGITLQLYDYGAATGRKGACCAGD 76

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D + ++HYVFD+E  FR  V+  FA  Y +G TP+PC+ CN   KF+DLL 
Sbjct: 77  DIQDARAVADRLGIAHYVFDHESAFREDVVEQFADDYLSGRTPVPCIRCNMGPKFTDLLR 136

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY+R     G+ G     + R +D  RDQSYFL+ TT+ QL  LRFP
Sbjct: 137 MARELGADCLATGHYVRR--VAGEHGPE---LHRALDPARDQSYFLYGTTETQLDFLRFP 191

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           LGD+ K +VR+LA   GL  A K DSQDICFV  G Y  +VK +       GDIVH   G
Sbjct: 192 LGDLPKTAVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKTMRPEGGTPGDIVHAQTG 251

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           ++LG+H GI++YT+GQRRGL +    EPL+VV LD  +SRV VGP+  L V    + E N
Sbjct: 252 EVLGQHKGIVHYTVGQRRGLEIGGQPEPLYVVGLDAAASRVKVGPKRLLAVQAASVIETN 311

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVY--VDFEKSEVGVASGQACV 366
            +G        +       K+RS   PVP+ +  +  DG    + FE+ E GVA GQA V
Sbjct: 312 RIGP-------LPDVPLTAKVRSLAKPVPITLDGSLGDGATTRITFEQPEFGVAPGQAGV 364

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D    RV+GGG I  ++ +
Sbjct: 365 IYAGD----RVIGGGWIDSTESA 383


>gi|85709728|ref|ZP_01040793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. NAP1]
 gi|85688438|gb|EAQ28442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. NAP1]
          Length = 390

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 186/380 (48%), Positives = 238/380 (62%), Gaps = 20/380 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL +   + R+VVAMSGGVDSSVVAAL    G +VIG+TLQLY+   A+ RKG+CCAG 
Sbjct: 21  FDLPRPASECRIVVAMSGGVDSSVVAALAADTGAEVIGITLQLYDYGAATGRKGACCAGD 80

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D + ++HYVFD+E  FR  V+  FA  Y AG TP+PC+ CN   KF+DL  
Sbjct: 81  DIADARAVSDRLGIAHYVFDHESAFREDVVEQFADEYLAGRTPVPCIRCNMGPKFTDLFR 140

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY+R    V  +G     + R  D  RDQSYFL+ATTQ+QL  +RFP
Sbjct: 141 MARELGADCLATGHYVRR---VEAEGGPH--LYRANDPSRDQSYFLYATTQEQLDFIRFP 195

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K  VR+LA   GL  A K DSQDICFV  G Y  +VK++     + G IVH   G
Sbjct: 196 LGGLPKTKVRELAEAAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGGVPGAIVHAATG 255

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           + LG H GII+YT+GQR+GL +    EPL+V+ LD  S  V VGP+  L V    + E N
Sbjct: 256 ETLGDHKGIIHYTVGQRKGLEIGGQPEPLYVISLDAESREVRVGPKRMLGVESAEVIETN 315

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDG--VYVDFEKSEVGVASGQACV 366
            +G      A+ DG +   K+RS   PVPV ++ +  DG  V + FE+ E GVA GQA V
Sbjct: 316 RIG------AIPDGAQLTAKVRSLAKPVPVTLEGDLGDGATVTLHFEQPEFGVAPGQAAV 369

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y  D    RV+GGG I+ +
Sbjct: 370 IYADD----RVIGGGWINAT 385


>gi|58616948|ref|YP_196147.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Gardel]
 gi|75432674|sp|Q5FFJ0|MNMA_EHRRG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58416560|emb|CAI27673.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Gardel]
          Length = 370

 Score =  332 bits (851), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 170/377 (45%), Positives = 237/377 (62%), Gaps = 14/377 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K P     VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ K S  KG+C
Sbjct: 6   KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNKNSNTKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V  ++   HY  +YE+ FR  VI  F  +Y  G+TP+PC+ CN+ +KF 
Sbjct: 66  CGSLDTKDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ LGADVL TGHYIR ++   DD      +    D ++DQSYFLFATT +QL  
Sbjct: 126 DLLNATKSLGADVLVTGHYIR-KIEQDDD----IYVYSSKDTKKDQSYFLFATTVEQLRL 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  KE +R LA+   L +A+K DSQ+ICFV    Y   +  +      +G+I+ 
Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTD-TYKKTIAELRPHTIKKGNIID 239

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +NG IL +HNGI+N+TIGQR+G+G++   PL+V+ L+ +++ V VGP+ +L  +++Y+RE
Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           INWL     E    +G    VK+RSS    P  +   N++   +  + S   V  GQACV
Sbjct: 300 INWLAK---EKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D    R+LGGG I
Sbjct: 357 IYDHD----RMLGGGWI 369


>gi|87198069|ref|YP_495326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|123487802|sp|Q2G2Z1|MNMA_NOVAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|87133750|gb|ABD24492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 384

 Score =  332 bits (851), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 185/382 (48%), Positives = 236/382 (61%), Gaps = 21/382 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DLD      R+VVAMSGGVDSSVVA L    G +VIGVTLQLY+   A+ RKG+CCAG 
Sbjct: 14  FDLDGPMSARRIVVAMSGGVDSSVVAGLAAATGAEVIGVTLQLYDYGAATGRKGACCAGD 73

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D + ++HYVFD+E  FR  V+  FA  Y +G TP+PCV CN   KF+DLL+
Sbjct: 74  DIRDARAVADRLGIAHYVFDHESSFREEVVERFADDYLSGRTPIPCVRCNMGPKFTDLLA 133

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY+R    +G  G     + R +D  RDQSYFL+ TT++QL  LRFP
Sbjct: 134 MARELGADCLATGHYVRR--VMGPAGPE---LHRAVDPARDQSYFLYGTTEEQLAFLRFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K   R +A E+GL +A K DSQDICFV  G Y  VV+ +       G+IVH   G
Sbjct: 189 LGGLPKTETRLIAEELGLAVAAKPDSQDICFVPDGDYARVVRSVRPEGDAPGEIVHAATG 248

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           ++LG H GII+YT+GQRRGL +    EPL+V+ LD  S RV+VGPR  L V    + E N
Sbjct: 249 EVLGTHRGIIHYTVGQRRGLEIGGQPEPLYVIGLDAPSRRVLVGPRPMLAVASATIVETN 308

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACV 366
            +G     DA +       K+RS   PVPV ++ +        + F + E GVA GQA V
Sbjct: 309 RIGP--LPDAPLT-----AKVRSLARPVPVVLEGSFGEGASARIRFSQPEYGVAPGQAAV 361

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D    RV+GGG I  ++R
Sbjct: 362 LYAGD----RVVGGGWIDSTER 379


>gi|205822510|sp|Q5FR73|MNMA_GLUOX RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 361

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/373 (49%), Positives = 248/373 (66%), Gaps = 25/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAALLKR G++VIG TLQLY+  +A+K  G+CCAG+D+ DAR V 
Sbjct: 1   MRILVAMSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQAAK-PGACCAGRDIMDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +   HYV D E RFR++V+  FA +YA GETP+PCV CN+ VKF+DLL + R LG + 
Sbjct: 60  DRLGFPHYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G +G     M RP+D ERDQ++FLFATT+ QL  LRFPLG+M  K  
Sbjct: 120 MATGHYVRR--VEGPEGAE---MHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAH 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA+E+GL+IA K DSQDICFV  G Y ++V+++   +  EG+IV  +G++LGRH G+
Sbjct: 175 VRALAQELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGV 234

Query: 260 INYTIGQRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLG 312
             YT+GQ + LG    A GE   V  +D    R++VGPR    E+     + LR++NWL 
Sbjct: 235 ARYTVGQSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL- 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSD 371
                DA  +G +C V+IR+ +      V+  ++G  +  E +E  + A GQACV Y   
Sbjct: 294 ----IDAPAEGVRCGVQIRAREKLREALVKPLENGGAL-VELTEAAMPAPGQACVLY--- 345

Query: 372 SNEARVLGGGIIS 384
            + +RVLGGG I+
Sbjct: 346 -DGSRVLGGGFIT 357


>gi|88608438|ref|YP_506353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia sennetsu str. Miyayama]
 gi|123491921|sp|Q2GDU3|MNMA_NEOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88600607|gb|ABD46075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia sennetsu str. Miyayama]
          Length = 371

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/366 (46%), Positives = 240/366 (65%), Gaps = 15/366 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARR 78
           D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+N+  +++  + +CCAG D++DA+R
Sbjct: 18  DVKVMVAMSGGVDSSTVAAYLHRVGYKVIGVTLQLHNNFTSTQTNRKTCCAGSDIFDAKR 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V       HYV + EE FR  VI  FA SY  GETP+PCV CN+TVKF DL+ + + L  
Sbjct: 78  VAAQFGFLHYVVNMEETFRKEVIENFAESYLKGETPVPCVKCNQTVKFRDLMKIAKSLSV 137

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R RL   +  +    + + +D  +DQSYFLF TT++QL  LRFPLG++KK 
Sbjct: 138 DALATGHYVR-RLTTTNGVE----LHKGIDPSKDQSYFLFNTTREQLEFLRFPLGNLKKS 192

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             RDLAR++ +DI++K +SQDICFV    Y DV+K+        G I+  +G++LG HNG
Sbjct: 193 ETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQRPGKILSTDGEVLGTHNG 252

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
            I+YTIGQR GL ++   PL+VV +D  ++ +IVG R+ L+   +Y++E+NWL       
Sbjct: 253 TIHYTIGQRHGLQLSAPIPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWLD----RK 308

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSNEARV 377
            +  G +C VK+RS  D V  ++  N + + V   E+ +  +A GQACV Y    + ++V
Sbjct: 309 ELTAGLECEVKLRSGADTVKGYLYPNGELLKVSLAEEPKCAIAPGQACVMY----HGSKV 364

Query: 378 LGGGII 383
           LGGG I
Sbjct: 365 LGGGWI 370


>gi|149185324|ref|ZP_01863641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. SD-21]
 gi|148831435|gb|EDL49869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. SD-21]
          Length = 383

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 183/384 (47%), Positives = 235/384 (61%), Gaps = 21/384 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL+K   + R+VVAMSGGVDSSVVAAL  + G +VIG+TLQLY+   A+ RKG+CCAG 
Sbjct: 16  FDLEKPASESRIVVAMSGGVDSSVVAALAAKSGAEVIGITLQLYDYGAATGRKGACCAGD 75

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D + ++HYV D+E  FR  V+  FA  Y AG TP+PC+ CN   KF+DL +
Sbjct: 76  DIADARAVADRLGIAHYVSDHESAFREEVVETFADEYLAGRTPVPCIRCNMGPKFTDLFA 135

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY++ RL +G  G     + R  D  RDQSYFL+ATT+ QL  LRFP
Sbjct: 136 MARELGADCLATGHYVQ-RL-MGPAGPE---LHRANDPARDQSYFLYATTEDQLNFLRFP 190

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K  VR+LA   GL  A K DSQDICFV  G Y  +VK++    A  G IVH   G
Sbjct: 191 LGGLPKAQVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKKMRPEGAAPGAIVHAATG 250

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           + LG H G+++YT+GQRRGL +    EPL+VV +D + ++V VGP+  L V   +L E N
Sbjct: 251 EELGTHKGVVHYTVGQRRGLEIGGQPEPLYVVGIDADQAQVKVGPKRMLAVSAAHLVETN 310

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDDGVYVDFEKSEVGVASGQACV 366
            +G        +       K+RS   PVP+ +           + FE  E GVA GQA V
Sbjct: 311 RIGP-------LPDVPLTAKVRSLAKPVPITLDGPLGEGAATTLRFETPEFGVAPGQAAV 363

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
            Y  D    RVLGGG I  + R D
Sbjct: 364 IYAGD----RVLGGGWIDSTTRCD 383


>gi|57238956|ref|YP_180092.1| tRNA-specific 2-thiouridylase MnmA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578889|ref|YP_197101.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Welgevonden]
 gi|81557340|sp|Q5HBV2|MNMA_EHRRW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57161035|emb|CAH57941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417515|emb|CAI26719.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Welgevonden]
          Length = 370

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/377 (44%), Positives = 236/377 (62%), Gaps = 14/377 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K P     VVAMSGGVDSSV AALL + GY VIG+TLQLYN+   S  KG+C
Sbjct: 6   KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNNNSNTKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V  ++   HY  +YE+ FR  VI  F  +Y  G+TP+PC+ CN+ +KF 
Sbjct: 66  CGSLDTQDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ LGADVL TGHYIR ++   DD      +    D ++DQSYFLFATT +QL  
Sbjct: 126 DLLNATKSLGADVLVTGHYIR-KIEQDDD----IYVYSSKDTKKDQSYFLFATTVEQLRL 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  KE +R LA+   L +A+K DSQ+ICFV    Y   +  +      +G+I+ 
Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTD-TYKKTIAELRPHTIKKGNIID 239

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +NG IL +HNGI+N+TIGQR+G+G++   PL+V+ L+ +++ V VGP+ +L  +++Y+RE
Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           INWL     E    +G    VK+RSS    P  +   N++   +  + S   V  GQACV
Sbjct: 300 INWLAK---EKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D    R+LGGG I
Sbjct: 357 IYDHD----RMLGGGWI 369


>gi|256092379|ref|XP_002581921.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Schistosoma mansoni]
 gi|238668268|emb|CAZ38161.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt
           ransferase,putative [Schistosoma mansoni]
          Length = 313

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/299 (52%), Positives = 209/299 (69%), Gaps = 8/299 (2%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD 72
           DK P   + VVAMSGGVDSSV A LL R GY VIGVTLQLY +     +++KG CCAGQD
Sbjct: 13  DKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQD 72

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +YDA+RV +     HY+ +YEE F+  VI  FA +Y  G+TP+PC+ CN+TVKF DLL V
Sbjct: 73  IYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQV 132

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           TR LGADVL TGHY+R RL    + K    +CR +D  +DQSYFLFATT++QL  LRFPL
Sbjct: 133 TRNLGADVLITGHYVR-RLEKNGEVK----LCRGIDKSKDQSYFLFATTKEQLKLLRFPL 187

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G   K +VR LAR   L I++K DSQDICFV +  Y   + ++      +G IV +NG++
Sbjct: 188 GGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKV 246

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           LG HNGI+N+T+GQR+GLG+A  EPL+VV ++  ++ ++VGP  +L   +I ++E+NWL
Sbjct: 247 LGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWL 305


>gi|58039815|ref|YP_191779.1| tRNA-specific 2-thiouridylase MnmA [Gluconobacter oxydans 621H]
 gi|58002229|gb|AAW61123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconobacter oxydans 621H]
          Length = 355

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 179/367 (48%), Positives = 242/367 (65%), Gaps = 25/367 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVAALLKR G++VIG TLQLY+  +A+K  G+CCAG+D+ DAR V D +   
Sbjct: 1   MSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQAAK-PGACCAGRDIMDARAVADRLGFP 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D E RFR++V+  FA +YA GETP+PCV CN+ VKF+DLL + R LG + +ATGHY
Sbjct: 60  HYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEAMATGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205
           +R     G +G     M RP+D ERDQ++FLFATT+ QL  LRFPLG+M  K  VR LA+
Sbjct: 120 VRR--VEGPEGAE---MHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAHVRALAQ 174

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E+GL+IA K DSQDICFV  G Y ++V+++   +  EG+IV  +G++LGRH G+  YT+G
Sbjct: 175 ELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGVARYTVG 234

Query: 266 QRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLGDGLFED 318
           Q + LG    A GE   V  +D    R++VGPR    E+     + LR++NWL      D
Sbjct: 235 QSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL-----ID 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSDSNEARV 377
           A  +G +C V+IR+ +      V+  ++G  +  E +E  + A GQACV Y    + +RV
Sbjct: 290 APAEGVRCGVQIRAREKLREALVKPLENGGAL-VELTEAAMPAPGQACVLY----DGSRV 344

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 345 LGGGFIT 351


>gi|326403958|ref|YP_004284040.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301]
 gi|325050820|dbj|BAJ81158.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301]
          Length = 345

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 226/364 (62%), Gaps = 21/364 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSSVVA L+   G++VIGVTLQLY+   A+ RKG+CCAGQD++DAR V 
Sbjct: 1   MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATSRKGACCAGQDIHDARNVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++HYV D E  FR AVI  FA SYA G TP+PCV CN+ +KF DLL + R LGA+ 
Sbjct: 61  DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           LATGHY+R      +DG     + R +D  RDQS+FLFATT+ QL   RFPLG M  K++
Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  M L +A+K DSQDICFV  G Y D+V ++    A  G+IV  +G +L RH GI
Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQ + LG A G    V  +D    R++VGPR +     + + E NWL      D 
Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               F+  VK+R+ + P P  +    + V +D   +    A GQACV Y     E+RVLG
Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARNLVTLD---TPALAAPGQACVVY----RESRVLG 340

Query: 380 GGII 383
           GG I
Sbjct: 341 GGFI 344


>gi|148260759|ref|YP_001234886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidiphilium cryptum JF-5]
 gi|205811039|sp|A5FZD5|MNMA_ACICJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146402440|gb|ABQ30967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidiphilium cryptum JF-5]
          Length = 345

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 226/364 (62%), Gaps = 21/364 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSSVVA L+   G++VIGVTLQLY+   A+ RKG+CCAGQD++DAR V 
Sbjct: 1   MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATGRKGACCAGQDIHDARNVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++HYV D E  FR AVI  FA SYA G TP+PCV CN+ +KF DLL + R LGA+ 
Sbjct: 61  DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           LATGHY+R      +DG     + R +D  RDQS+FLFATT+ QL   RFPLG M  K++
Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  M L +A+K DSQDICFV  G Y D+V ++    A  G+IV  +G +L RH GI
Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQ + LG A G    V  +D    R++VGPR +     + + E NWL      D 
Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               F+  VK+R+ + P P  +    + V +D   +    A GQACV Y     E+RVLG
Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARNLVTLD---TPALAAPGQACVVY----RESRVLG 340

Query: 380 GGII 383
           GG I
Sbjct: 341 GGFI 344


>gi|73666857|ref|YP_302873.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyl transferase
           [Ehrlichia canis str. Jake]
 gi|123615064|sp|Q3YSN0|MNMA_EHRCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72393998|gb|AAZ68275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia canis str. Jake]
          Length = 367

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 170/382 (44%), Positives = 231/382 (60%), Gaps = 27/382 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K+P    VVVAMSGGVDSSV AALL + GY VIG+TLQLYN+      KG C
Sbjct: 6   KIDPLVKNKSPSSTTVVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNTSG---KGGC 62

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V  ++   HY  +YE+ FR  VI  F  +Y  G+TP+PCV CN+ +KF 
Sbjct: 63  CGSTDTQDAKQVASSMGFPHYTLNYEKAFREEVIENFIDTYTQGKTPIPCVKCNQVIKFR 122

Query: 128 DLLSVTRQLGADVLATGHYIRS-----RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           DLL+ T+ LGADVL TGHYIR       +YV              D ++DQSYFLFATT 
Sbjct: 123 DLLNTTKSLGADVLVTGHYIRKVEQDDEIYVYSS----------KDTKKDQSYFLFATTI 172

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +QL  LRFPLG+  K+++R LA+   L +A K DSQ+ICFV    Y + +  +      +
Sbjct: 173 EQLKFLRFPLGNFHKDNIRKLAKYFNLSVAAKPDSQNICFVTD-TYKNTIAHLRPQTVKK 231

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G I+  NG ILG HNGI+N+TIGQRRG+G+A  EPL+V  L+ +++ V VGP+ +L  ++
Sbjct: 232 GHIIDTNGNILGEHNGIVNFTIGQRRGIGLASKEPLYVTKLNPDTNEVTVGPKSALLQNK 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVAS 361
           +++ +INWL   L +     G    VK+RSS       +  ND +   V  + +   V  
Sbjct: 292 LHIEDINWL---LKDKIPYSGLSVKVKLRSSHSGSTAIIYPNDMNKATVILQDTYCTVTP 348

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACV Y  D    R+LGGG I
Sbjct: 349 GQACVVYDGD----RMLGGGWI 366


>gi|88607883|ref|YP_505483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma phagocytophilum HZ]
 gi|123494742|sp|Q2GJG8|MNMA_ANAPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88598946|gb|ABD44416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma phagocytophilum HZ]
          Length = 378

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 175/377 (46%), Positives = 241/377 (63%), Gaps = 15/377 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L+SL   K P++  VVVAMSGGVDSSVVA LL + GY VIG T+QLY+S  AS  K SC
Sbjct: 6   QLDSLVPGKRPEETTVVVAMSGGVDSSVVAVLLHKMGYKVIGATMQLYSSPNASSGK-SC 64

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D+YDA++V  +    HYV +YEE FR  VI  F +SY AGETP+PC+ CN+TVKF 
Sbjct: 65  CGNADIYDAKKVAASFGFPHYVLNYEEVFRKEVIEDFVNSYKAGETPIPCIKCNQTVKFR 124

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           D+L + R +G DV+ATGHY+R RL V  +G+ +  +    D  +DQSYFLF+ T +QL  
Sbjct: 125 DMLKMARTIGGDVVATGHYVR-RLEV--EGELQ--IWSGKDKNKDQSYFLFSMTLEQLKF 179

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +RFPLG++ K  VR +A+ + +++ADK DSQDICFV +  Y   +  ++     +G I H
Sbjct: 180 VRFPLGNLVKGDVRKIAQYLNIEVADKPDSQDICFVPK-NYKKTLASLDPSAIKKGKIHH 238

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G +LG H+GI N+T+GQR+GLG+A   PL+VV LD   + VIVGP  SL   +++LR+
Sbjct: 239 IDGSVLGEHDGIANFTVGQRKGLGIAYPYPLYVVALDPVKNTVIVGPSSSLVKTQLFLRD 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366
           +NWL      +    G    V++RSS   V   + R+  DG           V+ GQACV
Sbjct: 299 LNWLSKDQIPE---HGLSASVRLRSSSSAVQATISRSAKDGKGRVVLHEGCVVSPGQACV 355

Query: 367 FYTSDSNEARVLGGGII 383
            Y ++    R+LGGG I
Sbjct: 356 IYDNE----RLLGGGWI 368


>gi|218506374|ref|ZP_03504252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli Brasil 5]
          Length = 229

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 138/219 (63%), Positives = 172/219 (78%)

Query: 94  ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYV 153
           +RFR  VI PFA SY AGETP+PCV CN+TVKF+DLL+  ++LGAD LATGHYIRSR   
Sbjct: 11  KRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHYIRSRPNP 70

Query: 154 GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIAD 213
             +   RR + RP D +RDQSYFLFATTQ+Q+  LRFPLG + K   R LA EMGL +A 
Sbjct: 71  SPEHPGRRALFRPADADRDQSYFLFATTQEQIDYLRFPLGGLPKAETRRLAEEMGLVVAK 130

Query: 214 KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA 273
           K+DSQDICFV QGKY D++ ++    AL G+IVHL+G++LG H GI+++TIGQRRG+G+A
Sbjct: 131 KADSQDICFVPQGKYSDIITKLKPNAALAGEIVHLDGRVLGSHEGILHFTIGQRRGIGIA 190

Query: 274 MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++NWLG
Sbjct: 191 TGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDVNWLG 229


>gi|68171265|ref|ZP_00544667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657652|ref|YP_507667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Arkansas]
 gi|123492948|sp|Q2GFW6|MNMA_EHRCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|67999312|gb|EAM85959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599109|gb|ABD44578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Arkansas]
          Length = 367

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/378 (43%), Positives = 235/378 (62%), Gaps = 19/378 (5%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K+P     VVAMSGGVDSSV AALL + GY VIG+TLQLYN+      KG+C
Sbjct: 6   KIDPLVKNKSPSATTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNTTG---KGAC 62

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V   +   HY  +YE+ F+  VI  F  +Y  G+TP+PC+ CN+ VKF 
Sbjct: 63  CGSLDTQDAKQVASIMGFPHYTLNYEKVFKEEVIDDFIDTYMQGKTPIPCIKCNQVVKFR 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ L AD+L TGHYIR ++   DD      +    D ++DQSYFLFATT +QL  
Sbjct: 123 DLLNATKSLDADILVTGHYIR-KIEQDDD----IYVYSSKDTKKDQSYFLFATTIEQLKF 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  K+++R LA    L IA+K DSQ+ICFV    Y + + ++      +G+I+ 
Sbjct: 178 LRFPLGNFHKDNIRKLAEHFNLPIANKPDSQNICFVAD-TYKNTIAQLRPNAIKKGNIID 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G ILG+H+GI+N+TIGQRRG+G++  EPL+V+ L+ +++ V VG + +L  +++++ +
Sbjct: 237 TSGNILGQHDGIVNFTIGQRRGIGLSSKEPLYVIKLNPDTNEVTVGHKSALLQNKLHIEK 296

Query: 308 INWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           INW    L +D +   G    VK+RSS       V  ND+    V  + +   V  GQAC
Sbjct: 297 INW----LVKDKIPHTGLNVKVKLRSSHSGSTAIVYPNDNNKATVLLQDTYCTVTPGQAC 352

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y  D    R+LGGG I
Sbjct: 353 VIYDGD----RMLGGGWI 366


>gi|117924260|ref|YP_864877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetococcus sp. MC-1]
 gi|205816907|sp|A0L678|MNMA_MAGSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117608016|gb|ABK43471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetococcus sp. MC-1]
          Length = 358

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 218/368 (59%), Gaps = 16/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           +  RV VAMSGGVDSS  AALL   GY+VIG+T+QL++   + K  GS  CCA  D+YDA
Sbjct: 3   QPQRVAVAMSGGVDSSATAALLVEQGYEVIGLTMQLWD-HSSPKVAGSRSCCALDDLYDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R+V  T+ + +YV +YE  FR AV+  F  +YAAG+TP PCV CN+ +KF  LL     L
Sbjct: 62  RQVAQTLGIPYYVVNYEADFRQAVVDDFIQTYAAGQTPNPCVRCNQILKFDLLLKKALAL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LATGHY   R    +D +    + +  D  +DQSYFLF TT  QL  +RFPLG+M 
Sbjct: 122 GADFLATGHYAIRR----EDAQGVPQLWQGSDPAKDQSYFLFTTTMAQLAHVRFPLGEMD 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+  R LA+  GL ++ K +SQD+CFV  G Y     +    +   G IV   G  LG+H
Sbjct: 178 KQQTRQLAQRFGLHLSTKQESQDVCFVPDGDYSAFFAKQAPHLLTPGAIVDQQGHSLGQH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+  YT+GQR+GLG+A   PL+V+ LD   ++VIVGP E+L   ++ L  +NWL     
Sbjct: 238 KGLGCYTVGQRKGLGIAHPTPLYVLALDAPHNQVIVGPAEALYQQQLTLHHVNWLE---- 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                + F    KIR +  PV   V+   D G  + F + +  +  GQACVFY    + A
Sbjct: 294 PTPPTEPFASMAKIRYAAPPVEARVEPLPDGGAQIYFNQPQRAITPGQACVFY----DGA 349

Query: 376 RVLGGGII 383
           RV+GGG I
Sbjct: 350 RVVGGGWI 357


>gi|299138824|ref|ZP_07032001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598978|gb|EFI55139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX8]
          Length = 375

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/385 (40%), Positives = 226/385 (58%), Gaps = 24/385 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-------KGSCCAG 70
           P +  + VAMSGGVDSS VAALL  +G D+IG+TLQL+N R+ + R       +G CC+ 
Sbjct: 2   PLNNTIAVAMSGGVDSSAVAALLHAEGRDLIGLTLQLWNQRRLAGREGMPETVQGRCCSI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            DVYDARRV + I + +Y+ + +ERF N V+ PF   Y AG TP+PC  CN  +KF  LL
Sbjct: 62  DDVYDARRVAEQIGIPYYLVNAQERFENEVVRPFVDEYLAGRTPIPCTLCNNHLKFDQLL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              RQ+GAD +ATGHY R+     D+ + R ++ RP D  +DQ+YFLF  TQ QL    F
Sbjct: 122 LTARQIGADRIATGHYARNHY---DEARERWVLSRPADKSKDQTYFLFGLTQDQLSRTLF 178

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIAL---EGDI 245
           PLG+M+K +VR +A + GL++A K DSQ+ICF+  G Y   +K      G  L    G++
Sbjct: 179 PLGEMQKPAVRSMAADHGLELAQKPDSQEICFIPGGSYSQFLKAYLDEQGRELPDSSGEL 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V  +G++LG H GI  +T+GQR+GLG++  +PL+V+ +  +S  V VG  + L    +  
Sbjct: 239 VSASGEVLGHHEGIHGFTVGQRKGLGLSSPQPLYVLNIHPDSHAVQVGTDDQLLSRTLIA 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             +NW+     ++ +    +  +KIR   +P P  ++    D V   F++ +  +  GQ+
Sbjct: 299 DRLNWVSIPEPKEEI----RVTIKIRHRHEPAPATLRVTAFDRVEATFDEPQRAITPGQS 354

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
            VFY  D     V GGG I    R+
Sbjct: 355 AVFYQGDE----VAGGGWIKAEDRA 375


>gi|322434612|ref|YP_004216824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX9]
 gi|321162339|gb|ADW68044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX9]
          Length = 379

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 158/389 (40%), Positives = 223/389 (57%), Gaps = 31/389 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-------KG 65
           DL + P+   + VAMSGGVDSS VAALL   GYD+IG+TLQL+N R+ +         +G
Sbjct: 3   DLSQIPET--IAVAMSGGVDSSAVAALLHEQGYDLIGLTLQLWNQRRLAGHEGMPESVQG 60

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+  DVYDARRV + I + +Y+ + +ERF   V+ PF S Y AG TP+PC  CN  +K
Sbjct: 61  RCCSIDDVYDARRVAEKIGIPYYLVNQQERFEADVVKPFVSEYLAGRTPIPCTLCNNHLK 120

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F  LL   RQ+GA  +ATGHY R+R    D+   R I+ RP D  +DQ+YFLF  TQ QL
Sbjct: 121 FDQLLLTARQVGATKIATGHYARNRF---DEATGRWILSRPADRSKDQTYFLFGLTQDQL 177

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIAL-- 241
               FPLG+M+K +VR +A E GLD+A K DSQ+ICF+  G Y   ++      G  L  
Sbjct: 178 AHTLFPLGEMQKPAVRVMATEAGLDVAAKPDSQEICFIPGGDYQTFLRAYLDEQGEELPD 237

Query: 242 -EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
             G++V  +G+++GRH GI N+T+GQR+GLG+    PL+V+ +  +S +V VG    L  
Sbjct: 238 SSGELVTSSGEVVGRHTGIHNFTVGQRKGLGLTSANPLYVLAIHPDSHQVQVGSDAELMT 297

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD------FEK 354
             +    +NW+        + +  +   K+R   +P P  +     G   D      F++
Sbjct: 298 RELRANRLNWISI----PEITEPIRVLAKVRHRHEPQPATLSSGGIGPDGDPIAIAIFDE 353

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  +  GQA +FY  D     V+GGG I
Sbjct: 354 PQRAITPGQAAIFYREDD----VVGGGWI 378


>gi|308513324|ref|NP_953615.2| tRNA-specific 2-thiouridylase MnmA [Geobacter sulfurreducens PCA]
 gi|81701559|sp|Q74A22|MNMA_GEOSL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41152729|gb|AAR35942.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sulfurreducens PCA]
 gi|298506604|gb|ADI85327.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter sulfurreducens KN400]
          Length = 365

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/369 (44%), Positives = 215/369 (58%), Gaps = 18/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDVYDAR 77
           R+V+AMSGGVDSSV AALLK +G++VIG+++Q+++    +  +G    +CC+  D++DAR
Sbjct: 8   RIVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYANFAAPEGEKFDTCCSLDDIHDAR 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + I +  YV ++EE FR  VI  F   Y  G TP PCV CN+ VKF  LL   R+LG
Sbjct: 68  RVAEQIGIPFYVVNFEEEFRRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLHKARELG 127

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LATGHY  +R   G+DG     + R +D  +DQSYFLF  TQ QL    FPLG+M K
Sbjct: 128 ADFLATGHY--ARRVRGEDGLYH--LLRGLDPAKDQSYFLFTLTQDQLARTLFPLGEMTK 183

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR LA E GL +A+K +SQ+ICFV    Y   ++       + G+IV   G +LGRH 
Sbjct: 184 EQVRRLAAERGLRVAEKGESQEICFVPDDDYVRFLEEERGTGLMAGEIVDRKGNVLGRHG 243

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YT+GQRRGLG+A   PL+VV +D    +VIVGP E L    +   E+ W+     +
Sbjct: 244 GTYRYTVGQRRGLGIAHPTPLYVVGVDAERRQVIVGPAEELLATGLTATEVTWVVPPQGQ 303

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  +   KIR    PVP  V  R D    V F + E  V  GQA VFY  D     
Sbjct: 304 TV-----EASCKIRYRHQPVPCTVAVRADGSAEVRFRQPEKSVTPGQAVVFYRDDE---- 354

Query: 377 VLGGGIISG 385
           VLGGG I G
Sbjct: 355 VLGGGWIEG 363


>gi|148263558|ref|YP_001230264.1| tRNA-specific 2-thiouridylase MnmA [Geobacter uraniireducens Rf4]
 gi|205816712|sp|A5GE36|MNMA_GEOUR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146397058|gb|ABQ25691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter uraniireducens Rf4]
          Length = 375

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 162/374 (43%), Positives = 224/374 (59%), Gaps = 18/374 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQ 71
           KN K  RVV+AMSGGVDSSV AALLK +G++VIG+++Q+++  + +  +G    +CC+  
Sbjct: 3   KNNKRKRVVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYTRFTAEEGEKFDTCCSLD 62

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D++DARRV + + +  YV ++EE F+N VI  F + Y  G TP PCV CN+ +KF  LL 
Sbjct: 63  DIHDARRVAEQLEIPFYVVNFEEEFQNLVIDDFVNEYLLGRTPNPCVRCNQWIKFELLLK 122

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R LGAD++ATGHY R+     D   R R+M + +D  +DQSYFLF  TQ+QL    FP
Sbjct: 123 KARGLGADMIATGHYARTE---QDADGRYRLM-KGVDPAKDQSYFLFTLTQEQLAMTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG M K+ VR LA   GL +A+K +SQ+ICFV    Y   ++       L G+IV   G+
Sbjct: 179 LGGMTKQEVRALAAGYGLRVAEKGESQEICFVPDNDYVRFIEEERGKQLLSGNIVDRKGK 238

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H+G   YT+GQR+GLG+A  EPL+V+ +D     V VGPR++L    +    INW+
Sbjct: 239 VLGVHDGTYRYTVGQRKGLGIAHPEPLYVLGVDAARKEVTVGPRDALYSDGLIATAINWI 298

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                E A+    +   KIR    P+P   +   D+   V F + E  V  GQA VFY  
Sbjct: 299 AP-TPETAI----EASCKIRYRHHPIPCRILPLADNRAEVRFTEREKSVTPGQAVVFYDG 353

Query: 371 DSNEARVLGGGIIS 384
           D+    VLGGG I 
Sbjct: 354 DT----VLGGGWIE 363


>gi|296133414|ref|YP_003640661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermincola sp. JR]
 gi|296031992|gb|ADG82760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermincola potens JR]
          Length = 358

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 220/367 (59%), Gaps = 14/367 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  +VVVAMSGGVDSS+ AALL+  GYDVIGVT+Q++ + + ++  G CC+   V DAR
Sbjct: 2   PKS-KVVVAMSGGVDSSLAAALLQEQGYDVIGVTMQIWPAEEQAE--GGCCSLAAVEDAR 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV DT+ + +YV ++ + FR  VI  F + Y AG TP PC+ CNR VKF  LL     LG
Sbjct: 59  RVADTLGIPYYVMNFRDLFRKTVIADFCAEYMAGRTPNPCIVCNRKVKFEALLQKALALG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY R      D+ +RR +M R +D  +DQ+Y L+  TQ QL     PLG+  K
Sbjct: 119 AEYIATGHYARLSY---DEARRRYLMRRALDRGKDQTYALYNLTQYQLKHTLMPLGNYTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
              R++A ++GL +A+K DSQ+ICFV    Y   ++         G  + L G +LGRH 
Sbjct: 176 AEAREMAAKLGLRVANKPDSQEICFVTDNNYRRFLEENVDQEIKPGPFLDLEGNVLGRHE 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQR+GLG+A+G+P++VV +D   + VI+G  E +    +   + N+    ++ 
Sbjct: 236 GIPFYTIGQRKGLGIALGKPMYVVDIDPERNAVILGSNEDVFARGLISTDNNF----IYI 291

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             + D  +  VKIR S  P    +  +DDGV V+FEK +  V  GQA VFY  D     V
Sbjct: 292 PELKDPMEVEVKIRYSAQPAKAIIYPHDDGVRVEFEKPQRAVTPGQAAVFYKDDY----V 347

Query: 378 LGGGIIS 384
           +GGG I 
Sbjct: 348 VGGGTIK 354


>gi|322419745|ref|YP_004198968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
 gi|320126132|gb|ADW13692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
          Length = 356

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/364 (43%), Positives = 213/364 (58%), Gaps = 16/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVC 80
           R+VVAMSGGVDSSV AALLK  G+DVIGV+LQLY   + +   G +CC+  DV DA RV 
Sbjct: 6   RIVVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPEQTVSGGKTCCSLTDVMDAARVA 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  ERFR  VI  F + YAAG TP PC  CN  +KF  LL +T    AD+
Sbjct: 66  RRLGIPFQVIDLRERFRELVIDDFITEYAAGRTPNPCARCNERIKFGLLLELTASFDADL 125

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +  DG     + + +D  +DQ+YFLF   QQQL    FP+G ++K  V
Sbjct: 126 LATGHYAR----IEADGTGTYQLLKGLDPRKDQTYFLFGMNQQQLARTIFPVGRLEKHEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+LA    L +A K +SQ+ICF+    Y   ++  +      G+IV  +G  LG H+GI 
Sbjct: 182 RELAARFNLPVAQKQESQEICFIPDNDYVRFLEE-HGVTPPAGEIVDSSGARLGTHDGIH 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLG+A  EPL+V  ++ +++RV+VGPRE L+   +   E+ W      +  +
Sbjct: 241 RYTVGQRRGLGIAWKEPLYVTSIETDTARVVVGPREELQRTGLLAEELTWT-----DSPI 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F+    IR  Q PVP      +DG + V+F+  + GV  GQA V Y +D    RV+G
Sbjct: 296 TGTFRGSCSIRYRQKPVPCSALMREDGRLQVEFDAPQSGVTPGQAVVLYDAD----RVVG 351

Query: 380 GGII 383
           GG I
Sbjct: 352 GGWI 355


>gi|291545182|emb|CBL18291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus sp. 18P13]
          Length = 359

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 211/366 (57%), Gaps = 15/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARR 78
           +V++ MSGGVDSSV A  L+++GYDV GVTL+L+      +A     +CCA +DV DAR 
Sbjct: 3   KVMIGMSGGVDSSVAALRLQQEGYDVTGVTLKLFGDEDIIQAPDATRTCCALRDVEDARS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +   H VF++++ FR+ V+ PF  SY  GETP PC+DCNR +KF  +L     LG 
Sbjct: 63  VAYRLGFEHLVFNFKDAFRSHVMQPFCDSYLRGETPNPCIDCNRHIKFDAMLRRAEALGY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY   R    D    R ++CRP D  +DQ+Y L+  TQ QL    FPLGD++K 
Sbjct: 123 DYIATGHYAVRRQ---DPATGRYLLCRPKDRSKDQTYVLYNLTQHQLAHTLFPLGDLEKA 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A   GL  + K DSQDICFV  G Y   ++         GD +   G  +GRH G
Sbjct: 180 QVRQMAEAAGLVNSHKPDSQDICFVPDGDYAGYIRHATGAEIQPGDFLDTTGNPIGRHRG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +I+YTIGQR+GLG+++G P +VV  D  S+ V +G    L      +RE+NW+       
Sbjct: 240 LIHYTIGQRKGLGLSLGRPAYVVGKDAASNTVTIGAESDLYTDSFTVRELNWIS----IP 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A+    +  VK R SQ  VP  ++  +DG     FE  +  V +GQ+ VFY  D+    V
Sbjct: 296 ALTAPMQVTVKTRYSQTEVPCRIEPMEDGTCRAVFEAPQRAVTAGQSAVFYDGDT----V 351

Query: 378 LGGGII 383
           +GGGII
Sbjct: 352 VGGGII 357


>gi|116619734|ref|YP_821890.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255775|sp|Q02BG1|MNMA_SOLUE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116222896|gb|ABJ81605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 371

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 217/372 (58%), Gaps = 18/372 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK------RKGSCCAGQDVYDA 76
           + VAMSGGVDSSVVAA+L R+G  V+G+T+QL+N R+  +        G CC+  DVYDA
Sbjct: 6   IAVAMSGGVDSSVVAAMLVREGRTVVGMTMQLWNQRRLPELAVEGATTGRCCSLDDVYDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + + + +YV ++EE+F   V+ PF   Y AG TP+PC  CN  +KF   L +   +
Sbjct: 66  RRVAEQVGIPYYVVNFEEQFEEHVVKPFVDEYLAGRTPIPCTLCNNYIKFDRFLEMADSV 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  +ATGHY R R    D+   R  + R +D  +DQ+YFLF  TQ QL    FPLG++ 
Sbjct: 126 GAYHMATGHYARIR---HDEATGRYQLLRAVDDSKDQTYFLFGLTQAQLARTLFPLGELN 182

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKY--FDVVKRINAGIALE---GDIVHLNGQ 251
           K  VRD+AR M L +A K DSQ+ICFV  G Y  F        G+A+E   G+IV  +G+
Sbjct: 183 KPEVRDMARSMDLAVAAKGDSQEICFVPNGDYAAFMSAYLKEKGVAVEETSGEIVTTDGR 242

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
            LGRH G+  +T+GQR+GLGVA GEPL+V+  +  + +V+VG  + L       +++NW+
Sbjct: 243 TLGRHEGVHRFTVGQRKGLGVATGEPLYVISTNPANHQVVVGGNDDLLRGGFTAKDVNWI 302

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                E       +  ++ R +  P  +    + D V V F++++  V  GQ  VFY  D
Sbjct: 303 SIAGVEPGAPVRAQVKIRNRHAAAPARLVATSDRDRVEVVFDEAQRAVTPGQGAVFYAGD 362

Query: 372 SNEARVLGGGII 383
                VLGGG I
Sbjct: 363 ----LVLGGGWI 370


>gi|225873266|ref|YP_002754725.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium capsulatum ATCC 51196]
 gi|259495822|sp|C1F792|MNMA_ACIC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225792803|gb|ACO32893.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 374

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 157/378 (41%), Positives = 217/378 (57%), Gaps = 28/378 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-------KGSCCAGQDVYD 75
           V VAMSGGVDSS VAA+L+ +GYD+IG+TLQL+N R+ + +       +G CC+  DVYD
Sbjct: 7   VAVAMSGGVDSSTVAAMLREEGYDLIGLTLQLWNQRRLAGKDGMPEPVQGRCCSIDDVYD 66

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV +T+ + +Y+ + +ERF + V+ PF S Y  G TP+PC  CN  +KF  LL   RQ
Sbjct: 67  ARRVAETLGIPYYLVNEQERFESDVVRPFVSEYLHGRTPIPCSLCNNHLKFDQLLLRARQ 126

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD +ATGHY R+     D  + R I+ RP D  +DQ++FLF  TQ+QL    FPLG  
Sbjct: 127 FGADRIATGHYARNEY---DPARGRWILKRPADRSKDQTWFLFGLTQEQLSRTLFPLGGY 183

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALE---GDIVHLNG 250
            K  VR++A    L +A K DSQ+ICF+  G Y   +       G ++    G++V   G
Sbjct: 184 TKPEVREIAATHKLALAAKPDSQEICFIPNGDYKRFIDAYLDEQGESIPDSAGELVSTTG 243

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++LGRH GI N+T+GQR+GLGV    PL+V+ +D  S RV VG    L       R+ NW
Sbjct: 244 EVLGRHAGIHNFTVGQRKGLGVTAPNPLYVLQIDPASHRVTVGSDTELATETFRARDCNW 303

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVY---VDFEKSEVGVASGQAC 365
           +        +    +  VKIR   +P    V+  R  DG     + F++ +  V  GQ+ 
Sbjct: 304 ISIA----DLTGERRAQVKIRHRHEPAWATVRPVRGADGTAEAEITFDEPQRAVTPGQSA 359

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D     V+GGG I
Sbjct: 360 VFYDEDE----VIGGGWI 373


>gi|222055075|ref|YP_002537437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. FRC-32]
 gi|221564364|gb|ACM20336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. FRC-32]
          Length = 370

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 161/376 (42%), Positives = 221/376 (58%), Gaps = 18/376 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCA 69
           ++K     RVV+AMSGGVDSSV AALL+  G++VIG+++Q+++  K +  +G    +CC+
Sbjct: 1   MNKEKSKKRVVIAMSGGVDSSVSAALLQEQGFEVIGISMQVWDYGKFAAAEGEKFDTCCS 60

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D++DARRV + + +  YV ++E+ F + VI  F   Y  G TP PCV CN+ +KF  L
Sbjct: 61  LDDIHDARRVAEQLGIPFYVVNFEDEFEDLVIKDFVDEYLKGRTPNPCVRCNQWIKFELL 120

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   R LGAD +ATGHY R+   + DD  R  ++ + +D  +DQSYFLF  TQ+QL    
Sbjct: 121 LKKARGLGADFIATGHYART---LRDDTGRFHLL-KGVDQTKDQSYFLFTLTQEQLAMTL 176

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG+M K  VR LA    L +A+K +SQ+ICFV    Y   ++       L G+IV  +
Sbjct: 177 FPLGEMTKTQVRALAARYNLRVAEKGESQEICFVPDNDYVRFIEEERGKELLSGNIVDRS 236

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+ILGRH G   YTIGQRRGLG+A  EPL V+ L+  +  V+VGP+++L  H +     N
Sbjct: 237 GKILGRHRGTYRYTIGQRRGLGIAHPEPLHVLELNAETKEVVVGPKDALFSHGLVAANTN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+      DA +    C  KIR    PV   V+      V V F + E  V  GQA VFY
Sbjct: 297 WINPA--PDAAIVA-TC--KIRYRHQPVSCTVKPLPCSRVEVRFAEREKSVTPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             D+    VLGGG I 
Sbjct: 352 EGDT----VLGGGWIE 363


>gi|78222093|ref|YP_383840.1| tRNA-specific 2-thiouridylase MnmA [Geobacter metallireducens
           GS-15]
 gi|123572471|sp|Q39XA9|MNMA_GEOMG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78193348|gb|ABB31115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter metallireducens GS-15]
          Length = 368

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 214/370 (57%), Gaps = 18/370 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDVYDAR 77
           R+VVAMSGGVDSSV AALLK +G++VIG+++Q+++  K S  +G    +CC+  D++DAR
Sbjct: 8   RIVVAMSGGVDSSVTAALLKEEGHEVIGISMQVWDYSKFSAPEGEKFDTCCSLDDIHDAR 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + I +  YV ++EE F+  VI  F   Y  G TP PCV CN+ VKF  LL   R+LG
Sbjct: 68  RVAEQIGIPFYVVNFEEEFQRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLRKARELG 127

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD+LATGHY  +R+  G DG     + R  D  +DQSYFLF  TQ+QL  + FPLG M K
Sbjct: 128 ADLLATGHY--ARIERGGDGLFH--LLRGDDPGKDQSYFLFTLTQEQLARVTFPLGGMTK 183

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR LA   GL +A+K +SQ+ICFV    Y   ++       L G+IV   G +LG H 
Sbjct: 184 PEVRQLATRFGLRVAEKGESQEICFVPDNDYVRFLEDERGAGQLVGEIVDRAGTVLGHHE 243

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YT+GQRRGLG+A   PL+VV +D    +VIVGP+E L    +   ++ W+      
Sbjct: 244 GTYRYTVGQRRGLGIAHPHPLYVVGVDAERRQVIVGPKEELLAPGLVATDVTWV-----I 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               +  +   KIR    PVP  V     +   V F + E  V  GQA VFY  D     
Sbjct: 299 ALATETLEAACKIRYRHHPVPCTVTVLAGNRAQVRFREPEKSVTPGQAVVFYHGDE---- 354

Query: 377 VLGGGIISGS 386
           VLGGG I  +
Sbjct: 355 VLGGGWIDAA 364


>gi|320108171|ref|YP_004183761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Terriglobus saanensis SP1PR4]
 gi|319926692|gb|ADV83767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Terriglobus saanensis SP1PR4]
          Length = 389

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 214/381 (56%), Gaps = 28/381 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-------ASKRKGSCCAGQDVYD 75
           + VAMSGGVDSS VAALL+  G+ ++G+TLQL+N R+         + +G CC+  DVYD
Sbjct: 20  IAVAMSGGVDSSAVAALLRSQGHTLVGLTLQLWNQRRLAGHEGMPEQVRGRCCSIDDVYD 79

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + + + +YV + +ERF   V+ PF + Y AG TP+PC  CN  +KF  LL   RQ
Sbjct: 80  ARRVAEQLEIPYYVVNQQERFEADVVKPFVAEYLAGRTPIPCTLCNNHLKFDQLLLTARQ 139

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA+ +ATGHY R+     D  + R I+ RP D  +DQ+YFLF  TQ QL    FPLG M
Sbjct: 140 IGAEKIATGHYARNEF---DVARNRWILKRPTDRSKDQTYFLFGLTQPQLARTLFPLGHM 196

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-----RINAGIALEGDIVHLNG 250
           +K +VR +A E  L +A K DSQ+ICF+  G Y   +      +  A     G++V   G
Sbjct: 197 EKPAVRAMAEEHDLAVAHKPDSQEICFIPGGDYKAFLAAYLDDQDQAMPDTAGELVDTTG 256

Query: 251 QILGRHNGIINYTIGQRRG----LGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G H GI N+T+GQR+G    L      P +V+ +D  +  V VG  + L V    + 
Sbjct: 257 NTVGHHTGIHNFTVGQRKGVQQNLNAHAASPFYVLGIDATTHNVTVGSDDDLFVRTARID 316

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
            +NW+     E  +    +   KIR   +P P  +  N+DG + + F++ +  V  GQ+ 
Sbjct: 317 RLNWISIATLETPL----RVEAKIRHRHEPAPATIAPNEDGTITLTFDEPQRAVTPGQSA 372

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           VFY  D     V+GGG IS +
Sbjct: 373 VFYQDDE----VVGGGWISSN 389


>gi|77919454|ref|YP_357269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter carbinolicus DSM 2380]
 gi|123573968|sp|Q3A3F8|MNMA_PELCD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77545537|gb|ABA89099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 352

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/366 (42%), Positives = 216/366 (59%), Gaps = 17/366 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+  ++VAMSGGVDS+V AALL   G+ V GVT++++++       G       + DAR+
Sbjct: 4   KNKHILVAMSGGVDSTVAAALLLAQGHQVSGVTMRVWDTEPL----GDGREPAHIRDARK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + +  +V D  E F   V+ PF   Y +G TP PCV CNR  KFS LL    +LGA
Sbjct: 60  VAFDLGIPLHVVDLREEFLQQVVTPFCEEYLSGRTPNPCVLCNRVFKFSRLLREADRLGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R    V  DG +  ++ +  + ++DQSYFLF  TQQQL  + FPLG+M KE
Sbjct: 120 DALATGHYAR---IVEHDGLK--VLAKGSNRQKDQSYFLFTLTQQQLQRVVFPLGEMSKE 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A  +GL +A K DSQDICF+  G Y   ++R +     EG IVH++G+ LG+H G
Sbjct: 175 EVRTHAERLGLHVAQKGDSQDICFIPDGDYIGFLERQSHATDTEGSIVHVSGKRLGKHRG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              +T+GQRRGLG+A  EPL+VV +D    +VIVG +E L V R+     NW+   + + 
Sbjct: 235 AYRFTVGQRRGLGIAWPEPLYVVAIDAAKKQVIVGEKEHLHVDRLVTTGTNWI---VAQP 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                 +C ++ R  + P  + V  ND  V V F++ + GV+ GQA VFY  D    RVL
Sbjct: 292 QQPLQARCRIRYRHQEAPCTLVVLGNDR-VEVRFDEPQSGVSPGQAAVFYDED----RVL 346

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 347 GGGWIA 352


>gi|302389695|ref|YP_003825516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200323|gb|ADL07893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 364

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 160/376 (42%), Positives = 221/376 (58%), Gaps = 19/376 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCA 69
           + L+KN    RVVVAMSGGVDSS  A LLK+ GY+VIG+T+Q++   S   + R+G CC+
Sbjct: 1   MSLNKN----RVVVAMSGGVDSSTCAYLLKKQGYEVIGITMQIWQDPSEDYTYREGGCCS 56

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              VYDAR+V + + + +YV +++E F   VI  F   Y  G TP PC+ CNR +KF  L
Sbjct: 57  IGAVYDARKVAEKLGIPYYVLNFKEEFNQKVIEYFIEEYLRGRTPNPCIACNRYIKFEAL 116

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L    ++ A  LATGHY R      D    R ++ + +D  +DQSY L+  TQ QL  L 
Sbjct: 117 LQKAMEVDAYYLATGHYARIEY---DSASGRYLLKKAVDKSKDQSYALYNLTQGQLEHLI 173

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            PLG   K  +RD+A+E GL +A+K DSQ+ICFV    Y + +K   +G    G IV  N
Sbjct: 174 MPLGYFTKSQIRDIAKEAGLPVAEKPDSQEICFVND-DYKEFLKEKASGRIKPGPIVDKN 232

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+ILG+H GI  YTIGQRRGLG++ G+PL+V+ +D+  + V+VG  + L         +N
Sbjct: 233 GRILGQHKGIAFYTIGQRRGLGISAGKPLYVIDIDRKRNAVVVGEEKDLLTKEFTADHVN 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+      D + D  + F KIR + D  P  +   + G V V F++ +  V  GQ+ VFY
Sbjct: 293 WIA----FDVLDDKKRVFAKIRYNFDEKPAQIMPLNSGMVKVVFDEPQKSVTPGQSVVFY 348

Query: 369 TSDSNEARVLGGGIIS 384
             D     VLGGGIIS
Sbjct: 349 DGDV----VLGGGIIS 360


>gi|197118358|ref|YP_002138785.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
 gi|197087718|gb|ACH38989.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
          Length = 359

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/365 (43%), Positives = 214/365 (58%), Gaps = 18/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVC 80
           +++VAMSGGVDSSV AALLK  G+DV+GV+LQLY   +++   G +CC+  DV DA RV 
Sbjct: 9   QILVAMSGGVDSSVTAALLKEQGHDVMGVSLQLYERPESTPSGGKTCCSLTDVMDAARVA 68

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  ERF+  VI  F + YAAG TP PC  CN  +KF  LL +    GAD+
Sbjct: 69  KRLGIPFEVIDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLDMAASFGADL 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +  D +    + + +D  +DQSYFLF   Q+QL  + FP+G+++K  V
Sbjct: 129 LATGHYAR----IEQDAEEIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPVGNLEKRVV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R+ A    L +A K +SQ+ICF+    Y   ++   AG+  E GDIV  +G  LG H GI
Sbjct: 185 REHAARFNLPVAQKQESQEICFIPDNDYVRFLE--EAGVRPEAGDIVDKSGNKLGSHVGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQRRGLG+A  EPL+V  +D  +SRV+VGP E L++  +   E+ W      +  
Sbjct: 243 HKYTIGQRRGLGIAWKEPLYVTAIDGATSRVVVGPEEDLKIGGLVAGELTWT-----DKP 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +  GF     IR    PVP   +  +DG + V+FE  +  V  GQA V Y  D    +V+
Sbjct: 298 ISGGFNGSCSIRYRMQPVPCSARLIEDGRMQVEFETPQRAVTPGQAVVLYQGD----KVV 353

Query: 379 GGGII 383
           GGG I
Sbjct: 354 GGGWI 358


>gi|262196730|ref|YP_003267939.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haliangium ochraceum DSM 14365]
 gi|262080077|gb|ACY16046.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haliangium ochraceum DSM 14365]
          Length = 391

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 223/378 (58%), Gaps = 29/378 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCD 81
           +V A+SGGVDS+V AA+L   G+ V+G+T++LY++   S    G CC  +D+ DARRVC 
Sbjct: 7   IVAALSGGVDSAVTAAMLVEQGHRVVGMTMRLYDASGTSASVGGRCCGPRDIEDARRVCA 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  YV ++E  F + VI  F  +Y AGETP PCV CN+ +KF+ LL+  R LGA+ +
Sbjct: 67  HLGIPFYVVNFEVDFAHTVIDDFVDTYLAGETPNPCVKCNQHIKFTPLLARARALGAETV 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    + D G   R+  R  D  +DQSYFLF+  +++L  +RFPLG M K+ VR
Sbjct: 127 ATGHYAR----LEDTGAGIRLR-RGRDASKDQSYFLFSMPREELASVRFPLGAMTKDEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK----RINAGIALEGDIVHLNGQILGRHN 257
           D AR  GL  A K+DSQ+ICFV  G Y   V+    R +  +   GDIV   GQ+LGRH 
Sbjct: 182 DKARAYGLPNAAKADSQEICFVPDGDYAGFVEAEALRRSRPVPASGDIVDGEGQVLGRHR 241

Query: 258 GIINYTIGQRRGLG-----VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+ +YTIGQRRGLG          PL+V+ +D+   RV+VGPRE      + +R++ WL 
Sbjct: 242 GVHHYTIGQRRGLGNLRTQTRSPTPLYVIGVDRARDRVVVGPREQAARRSVPVRDVRWLS 301

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQACV 366
               E  +  G    V++R    P+P  ++   +G      V V F+ + V  + GQA V
Sbjct: 302 TPPAEGRLSAG----VQVRYRSSPLPATLELCGEGDERGKRVRVHFDDAAVIASPGQAAV 357

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D+    VLGGG I+
Sbjct: 358 FYDGDT----VLGGGWIA 371


>gi|94969297|ref|YP_591345.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Koribacter
           versatilis Ellin345]
 gi|189036216|sp|Q1IPC9|MNMA_ACIBL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94551347|gb|ABF41271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 370

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 220/381 (57%), Gaps = 30/381 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQ 71
           K   + VAMSGGVDSS VAA+L+ +GY+++G+T+QL+N R+ +  +G        CC+  
Sbjct: 3   KSETIAVAMSGGVDSSTVAAMLRAEGYNLVGLTMQLWNQRRLAHHEGFGEPGVGRCCSLD 62

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           DVYDARRV +T+ + +YV + E+RF   V+ PF   Y +G TP+PC  CN  +KF  LL 
Sbjct: 63  DVYDARRVAETLAIPYYVVNQEDRFERDVVKPFVEDYLSGRTPIPCSLCNNHLKFDQLLR 122

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q+GA+ +ATGHY R+     +    R  + RP D  +DQ+YFLF  TQ+QL    FP
Sbjct: 123 TAQQIGAEKIATGHYARNDF---NAQTGRWELKRPADRAKDQTYFLFGLTQEQLSRTLFP 179

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIAL---EGDIV 246
           LG   K  VR+ A+  GL + +K DSQ+ICF+  G Y   +       G +L    G++V
Sbjct: 180 LGHKTKPEVREDAKNHGLKLFEKPDSQEICFIPNGDYKKFLDAYLEEQGESLPDTSGELV 239

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G+++G H GI N+T+GQR+GLGVA G PL+V+ L  +  +V+VG  + L    +  +
Sbjct: 240 TSSGEVVGHHTGIHNFTVGQRKGLGVATGSPLYVIELRGDKRQVVVGNNDELLTRNLRAK 299

Query: 307 EINWLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASG 362
            +NW+       AV D     +   KIR   +P    +++  DD V V F+  +  V  G
Sbjct: 300 RMNWI-------AVSDLAQPMRVHAKIRHKHEPAWATIEKTGDDEVLVTFDDPQRAVTPG 352

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA V Y  D     V+GGG I
Sbjct: 353 QAVVLYDGDV----VVGGGWI 369


>gi|317056376|ref|YP_004104843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 7]
 gi|315448645|gb|ADU22209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 7]
          Length = 360

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 153/367 (41%), Positives = 212/367 (57%), Gaps = 13/367 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ AMSGGVDSS    LL   GY+V G T+ LYN+     R+ SCC+  DV DAR V  
Sbjct: 5   KVLAAMSGGVDSSTAVKLLLDAGYEVAGATMHLYNNEDIGIREKSCCSLNDVEDARLVAL 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +VF++ + F+  V+  F  +Y AG TP PC++CN+ +KF   L   R LG D +
Sbjct: 65  KLGIDFHVFNFSDEFKTCVMDNFVDTYLAGGTPNPCIECNKHLKFGRFLDRARMLGFDYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+ S     DD   R ++ R  D  +DQSY L+  TQ QL    FP+G+M K  +R
Sbjct: 125 ATGHYVTSHY---DDASGRWLLKRSADSSKDQSYVLYGMTQDQLAHTIFPVGEMSKPEIR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A K DSQDICF+  G Y   +    AG   EGDIV  +G +LGRH G+I+
Sbjct: 182 AIAEENGLINAHKRDSQDICFIPDGDYASFITE-RAGEQPEGDIVLSDGTVLGRHKGLIH 240

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRG+GV+  EPLFV   D  S+R+I+G  E +   R+   ++N++    FE    
Sbjct: 241 YTIGQRRGVGVSYSEPLFVTAKDMVSNRLIMGTAEQVCSKRLSAHDVNFI---TFEKLTA 297

Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +C  + R  Q  VP  V    ++ V V+F+     V+ GQ+ VFY  +     V+GG
Sbjct: 298 P-LRCTAQTRYHQKDVPCTVFPTGENTVEVEFDTPHKAVSKGQSVVFYDGE----YVIGG 352

Query: 381 GIISGSK 387
           G ISG++
Sbjct: 353 GTISGTE 359


>gi|164688541|ref|ZP_02212569.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM
           16795]
 gi|164602954|gb|EDQ96419.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM
           16795]
          Length = 362

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 223/369 (60%), Gaps = 15/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK---RKGSCCAGQDVYDARR 78
           +V++ MSGGVDSSV A LLK  GYDVIGVT++L+   +  +     G CC+ + V DAR 
Sbjct: 4   KVMIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLWQDDEEYELIENDGGCCSLEAVEDARS 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV +++E F+  VI  F   Y  G TP PC+ CN+ +KF DL    RQ+G 
Sbjct: 64  VAQKLDIPFYVLNFKEVFKEKVIDYFIDEYINGRTPNPCIACNKYIKFEDLYRRARQIGC 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      D+   R ++ + +  ++DQ+Y L+  TQ QL     P+GD +KE
Sbjct: 124 DYVATGHYARIE---KDEETGRYLLTKSVTDKKDQTYALYNMTQDQLEHTLLPIGDFEKE 180

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E+GL + +K DSQ+ICFV+   Y + VKR +     EG+ V   G +LGRH G
Sbjct: 181 KVREMAKELGLVVHNKPDSQEICFVKDNDYANYVKRHSNASIKEGNFVDTKGNVLGRHKG 240

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+NYTIGQR+GLG+A G+P+FV+ ++  ++ VI+G  + L  H +  +++N++     ED
Sbjct: 241 IVNYTIGQRKGLGIAFGKPMFVIDINAKNNTVILGDNKDLFQHNLIAKDVNFIS---IED 297

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   K+R +  P    V +   D + + F++++  +  GQ+ V Y  D    +V
Sbjct: 298 -IKEPIRVKAKVRYAAKPADATVYKVGQDKIKIVFDEAQRAITKGQSVVMYDGD----KV 352

Query: 378 LGGGIISGS 386
           +GGGII  S
Sbjct: 353 VGGGIIESS 361


>gi|157273520|gb|ABV27419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Chloracidobacterium thermophilum]
          Length = 392

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 159/396 (40%), Positives = 218/396 (55%), Gaps = 45/396 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK------ASKRKGSCCAGQDVYD 75
           R+ VAMSGGVDSS  AALLK  GYDV+G ++QL+N R+       +     CC+  D+YD
Sbjct: 4   RIAVAMSGGVDSSTAAALLKEQGYDVVGFSMQLWNQRRINVDAEGNPLPSRCCSLDDLYD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V + + +  YV ++EE F   V+ PF  SY  G TP PCV CN  +KF  L+++ R 
Sbjct: 64  ARAVAEALGIPFYVLNFEEEFEARVVRPFVVSYLNGNTPSPCVACNSRMKFDTLVALARD 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA  +ATGHY R +    +D   R  + +  DL +DQSYFLF  TQ+QL    FPLG++
Sbjct: 124 VGAAKVATGHYARVQF---NDTTGRWELRKGRDLHKDQSYFLFELTQEQLAWALFPLGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA------------------ 237
            K   R LAR  GL  A+K++SQ+ICF+  G Y   ++R  A                  
Sbjct: 181 SKAETRALARRYGLPTAEKAESQEICFIPDGNYARFIERYLAEAGGTVAGEPQSPVAPTL 240

Query: 238 -------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE--PLFVVYLDKNSS 288
                   +   G+IV  +G++LGRHNGI +YT+GQRRGLGV  G+  PL+VV +D    
Sbjct: 241 VQLGLRRNMPQPGEIVTTDGRVLGRHNGIHHYTVGQRRGLGVTAGDGRPLYVVRIDAARG 300

Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG- 347
           +VIVGP E+L    +    +NW+   L E  +    +C  +IR      P  +    DG 
Sbjct: 301 QVIVGPEEALTGKTLTATRVNWI--TLPE--LTAPRRCAARIRYRHLEAPATIYPLPDGN 356

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V V F+  +  +  GQA VFY  +     VLGGG I
Sbjct: 357 VRVVFDIPQKAITPGQAVVFYDGEL----VLGGGWI 388


>gi|253700862|ref|YP_003022051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
 gi|251775712|gb|ACT18293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
          Length = 359

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/373 (42%), Positives = 217/373 (58%), Gaps = 21/373 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDV 73
           DK+ K  R++VAMSGGVDSSV AALLK  G+DVIGV+LQLY   +++   G +CC+  DV
Sbjct: 3   DKSLKK-RILVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPESTPSGGKTCCSLTDV 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA RV   + +   V D  ERF+  VI  F + YAAG TP PC  CN  +KF  LL +T
Sbjct: 62  MDAARVAKRLGIPFEVVDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLEMT 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G D+LATGHY R    +  D +    + + +D  +DQSYFLF   Q+QL  + FP+G
Sbjct: 122 ASFGTDLLATGHYAR----IEQDSEGIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPVG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI 252
           +++K  VR+ A    L +A K +SQ+ICF+    Y   ++   AG+  E GDIV  +G  
Sbjct: 178 NLEKRVVREHAARFNLPVAQKQESQEICFIPDNDYVRFLE--EAGVKPEAGDIVDGSGNK 235

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H GI  YT+GQRRGLG+A  EPL+V  ++  +SRV+VGP E L+   +   E+ W  
Sbjct: 236 LGSHVGIHKYTVGQRRGLGIAWKEPLYVTAINGATSRVVVGPEEDLKTGGLVAGELTWT- 294

Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                D  + G F     IR    PVP   +  ++G + V+FE  +  V  GQA V Y  
Sbjct: 295 -----DKPISGTFNGSCSIRYRMKPVPCSARLIEEGSIQVEFETPQRAVTPGQAVVLYQG 349

Query: 371 DSNEARVLGGGII 383
           D    +V+GGG I
Sbjct: 350 D----KVVGGGWI 358


>gi|283781959|ref|YP_003372714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Pirellula staleyi DSM 6068]
 gi|283440412|gb|ADB18854.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Pirellula staleyi DSM 6068]
          Length = 373

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 213/381 (55%), Gaps = 28/381 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-----------------QLYNSRKASKRK 64
           R+V+AMSGGVDSSV AA+L R G++VIGV +                 QL   ++ S  K
Sbjct: 3   RIVLAMSGGVDSSVAAAILTRAGHEVIGVFMRHGEEAQAACAVDAPGFQLPIFKERSDHK 62

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             CC+  D  DARRV D +++  Y  + +  FR  +I  F   Y  G TP PCV CN  +
Sbjct: 63  QGCCSASDAEDARRVADRLDIPFYALNLQSEFRQ-IIDYFIDEYTVGRTPNPCVQCNNWL 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF  L      +GA+ +ATGHY R     GD       +CR +D  +DQSY LF   ++ 
Sbjct: 122 KFGKLFDYADSVGAEFVATGHYARLAQIDGD-----LALCRGVDDGKDQSYVLFGIKKEL 176

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +  P+GD  K  +R LA E+GL +ADK DSQ+ICFV  GK+ + V+     I   G+
Sbjct: 177 LPRMLLPIGDYYKPQIRKLAHEIGLRVADKRDSQEICFVTSGKHDEFVRARRPDIDTRGE 236

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV + G++LG+H GI  +TIGQRRGLGVA+GE  FVV ++ ++ RV+VG R+ L    + 
Sbjct: 237 IVTMEGKVLGQHAGIERFTIGQRRGLGVALGERAFVVRIEPDTHRVVVGTRDDLARTALT 296

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
               NW        A+ + F+C  KIR + DP P    R  DD + VDF++   GVA GQ
Sbjct: 297 AANCNWHTTKSPVGAIGEPFRCEAKIRYNSDPAPATAVRLTDDRLQVDFDEPRHGVAPGQ 356

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           A V Y  D    RVLGGG I 
Sbjct: 357 AVVVYDGD----RVLGGGWIE 373


>gi|126698878|ref|YP_001087775.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile 630]
 gi|123174593|sp|Q18BE2|MNMA_CLOD6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115250315|emb|CAJ68137.1| transfer RNA-specific 2-thiouridylase MnmA [Clostridium difficile]
          Length = 361

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV +
Sbjct: 6   KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRVAN 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D +
Sbjct: 66  KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ VR
Sbjct: 126 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 182

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI+ 
Sbjct: 183 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 242

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E L    +  +++N++     E+ + 
Sbjct: 243 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISIDTLEEPL- 301

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR S  P P  + R  +D + + F++++  +  GQ+ V Y  D     V+GG
Sbjct: 302 ---RVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VVGG 354

Query: 381 GIISGS 386
           GII  S
Sbjct: 355 GIIEKS 360


>gi|295695739|ref|YP_003588977.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Bacillus tusciae DSM 2912]
 gi|295411341|gb|ADG05833.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Bacillus tusciae DSM 2912]
          Length = 363

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 216/366 (59%), Gaps = 14/366 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSSV AALLK  GYDVIG+T++L    + S  +G CC+  DV DARRVC +
Sbjct: 6   VVVAMSGGVDSSVTAALLKERGYDVIGITMRLRGGEETSSGRG-CCSVDDVSDARRVCQS 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  Y  +Y E F   VI  F   Y  G TP PC+ CN  +K+  LL     LGAD LA
Sbjct: 65  LGIPFYAVNYREAFEKRVIQYFEDEYKRGRTPNPCIACNMYMKYDLLLEQAVDLGADYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  LY  D+ + R ++ +  D  +DQ+Y L+  TQ+QL    FPLG+ +K  VR+
Sbjct: 125 TGHYARV-LY--DESRGRYVLRKAEDRRKDQTYVLYHLTQEQLARTLFPLGEYEKSEVRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIIN 261
           +AR+ GL +A+K++SQDICF+  G Y + ++R     A+  GD V   G ++GRH G+  
Sbjct: 182 MARKFGLRVANKAESQDICFIPNGDYGEFLRRRMGDSAVAPGDFVDTEGHVVGRHEGVSF 241

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLGVA+G P++VV +    +RV++GP+E +    +   ++NWL        + 
Sbjct: 242 YTIGQRKGLGVAVGHPVYVVDIQPERNRVVLGPKERVFSPGLVASKVNWLSLPRPNGPI- 300

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR         +   + G V V+F++ +  V  GQA VFY  +     V+GG
Sbjct: 301 ---RVSAKIRYGAPEAAATLYPEEAGRVRVEFDEPQRAVTPGQAVVFYRGEE----VVGG 353

Query: 381 GIISGS 386
           G I  S
Sbjct: 354 GTIEKS 359


>gi|254974826|ref|ZP_05271298.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-66c26]
 gi|255092214|ref|ZP_05321692.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CIP 107932]
 gi|255100299|ref|ZP_05329276.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-63q42]
 gi|255306238|ref|ZP_05350410.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile ATCC 43255]
 gi|255313953|ref|ZP_05355536.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-76w55]
 gi|255516633|ref|ZP_05384309.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-97b34]
 gi|255649732|ref|ZP_05396634.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-37x79]
 gi|260682888|ref|YP_003214173.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CD196]
 gi|260686486|ref|YP_003217619.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile R20291]
 gi|260209051|emb|CBA62172.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CD196]
 gi|260212502|emb|CBE03431.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile R20291]
          Length = 359

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV +
Sbjct: 4   KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRVAN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D +
Sbjct: 64  KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ VR
Sbjct: 124 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI+ 
Sbjct: 181 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 240

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E L    +  +++N++     E+ + 
Sbjct: 241 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISIDTLEEPL- 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR S  P P  + R  +D + + F++++  +  GQ+ V Y  D     V+GG
Sbjct: 300 ---RVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VVGG 352

Query: 381 GIISGS 386
           GII  S
Sbjct: 353 GIIEKS 358


>gi|296451277|ref|ZP_06893017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP08]
 gi|296880371|ref|ZP_06904334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP07]
 gi|296259883|gb|EFH06738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP08]
 gi|296428612|gb|EFH14496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP07]
          Length = 361

 Score =  272 bits (695), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV +
Sbjct: 6   KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRVAN 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D +
Sbjct: 66  KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ VR
Sbjct: 126 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 182

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI+ 
Sbjct: 183 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 242

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E+L    +  +++N++     E+ + 
Sbjct: 243 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISIDTLEEPL- 301

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR S  P P  + R   D + + F++++  +  GQ+ V Y  D     V+GG
Sbjct: 302 ---RVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VVGG 354

Query: 381 GIISGS 386
           GII  S
Sbjct: 355 GIIEKS 360


>gi|255655293|ref|ZP_05400702.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-23m63]
          Length = 359

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV +
Sbjct: 4   KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRVAN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D +
Sbjct: 64  KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ VR
Sbjct: 124 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI+ 
Sbjct: 181 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 240

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E+L    +  +++N++     E+ + 
Sbjct: 241 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISIDTLEEPL- 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR S  P P  + R   D + + F++++  +  GQ+ V Y  D     V+GG
Sbjct: 300 ---RVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VVGG 352

Query: 381 GIISGS 386
           GII  S
Sbjct: 353 GIIEKS 358


>gi|153813145|ref|ZP_01965813.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174]
 gi|149830800|gb|EDM85890.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174]
          Length = 375

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 152/364 (41%), Positives = 210/364 (57%), Gaps = 13/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L+ ++GYD  G TL+LY++ + S     +CC   D  DAR V 
Sbjct: 14  KAIIAMSGGVDSSVAAYLMVKEGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARSVA 73

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YVF   + FR++VI  FA +Y  G TP PC+DCNR +KFS LL   R+LG + 
Sbjct: 74  ARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGCEY 133

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY R      D    R I+ + +D  +DQSY L+A TQ QL    FPLG   K+ +
Sbjct: 134 IASGHYARREQ---DPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGSYTKKEI 190

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A++ G   ADK DSQDICFV  G Y   +++     +  GD V   G +LG+H G I
Sbjct: 191 RHIAQKQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGNVLGKHKGQI 250

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGLG++  E L+V     +S++VI+G ++ L     Y+ +IN +      D +
Sbjct: 251 HYTIGQRRGLGISAPESLYVCGKSLDSNKVILGGKQDLMSTCCYINDINLIP----WDHL 306

Query: 321 VDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               KC VK R  Q   P  V Q  DD + + FE+ +  V  GQA V Y  D     VLG
Sbjct: 307 DKPIKCKVKTRYRQPEQPATVEQLGDDLLKITFEEPQRAVTPGQAAVLYDGD----MVLG 362

Query: 380 GGII 383
           GG I
Sbjct: 363 GGTI 366


>gi|153814505|ref|ZP_01967173.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756]
 gi|317500546|ref|ZP_07958768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089354|ref|ZP_08338254.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847999|gb|EDK24917.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756]
 gi|316898056|gb|EFV20105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405417|gb|EGG84952.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 356

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 212/365 (58%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 3   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEDVCTVEENGGCCGLSAVEDARRV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++ E F+  VI  FA SY  G+TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 63  AAALGIPYYVMNFREEFQKNVIDYFADSYVNGQTPNPCIACNRYVKWEALLKRSISIGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    V      R  + R     +DQ+Y L+  TQ+QL     P+G+  KE 
Sbjct: 123 FIATGHYAR----VEQLSNGRYALRRSATAAKDQTYALYNLTQEQLKRTLMPVGEYTKEE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL +ADK DSQDICFVQ G Y   ++      A EG+ V  +G ++GRH GI
Sbjct: 179 VRVIAEKIGLLVADKPDSQDICFVQDGNYAAFIEEHTGKKASEGNFVTSDGTVIGRHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQR+GLG+A+G P FV+ +   ++ V++G  E      +  +++N++     ED 
Sbjct: 239 IHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTTVVRAKQLNFMS---VED- 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  + F KIR +       V+R  +D V   FE+ +  V  GQA VFY  +     VL
Sbjct: 295 LKEPLRVFAKIRYNHKGAWCTVERTKEDEVTCCFEEPQRAVTPGQAIVFYDGE----YVL 350

Query: 379 GGGII 383
           GGG I
Sbjct: 351 GGGTI 355


>gi|268608557|ref|ZP_06142284.1| tRNA-specific 2-thiouridylase MnmA [Ruminococcus flavefaciens FD-1]
          Length = 358

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 212/366 (57%), Gaps = 15/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARR 78
           +V+V MSGGVDSSV A LL+  GYDV+GVTL+L++     +A K   +CCA  DV DAR 
Sbjct: 3   KVMVGMSGGVDSSVAAMLLREQGYDVMGVTLKLFSDEDIDQAQKEGKTCCALSDVEDARS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +   H VF++++ FR  V+  F+ SY  G TP PC++CNR VKF  +L    +L  
Sbjct: 63  VARRLGFEHLVFNFKDNFREHVMKQFSDSYLCGRTPNPCIECNRHVKFDKMLRRALELEY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY        D+ + R ++ R  D  +DQ+Y L++ TQ+QL    FPLG + K 
Sbjct: 123 DYIATGHYAVCEY---DEERGRWLLKRSADRSKDQTYVLYSLTQEQLSHTLFPLGSLDKT 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+LA + GL  ++K DSQDICFV  G Y   ++R        G+ V + G++LG H G
Sbjct: 180 QVRELAEKAGLVNSNKPDSQDICFVPDGDYAGFIRRFTGTDVPHGNFVDMEGKVLGEHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYT+GQR+GLG+++G+P +VV  D +++ V +G    L    +   + N +       
Sbjct: 240 IINYTVGQRKGLGISLGKPAYVVKKDVDTNTVTLGDESDLYTKTLIADDFNLISVA---- 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   K R SQ+  P  V    +G Y V+F++ +  V SGQA V Y  D     V
Sbjct: 296 ELTEPMRVTAKTRYSQNEQPATVSYLGNGEYMVEFDQPQRAVTSGQAVVLYDGDI----V 351

Query: 378 LGGGII 383
           +GGG I
Sbjct: 352 VGGGTI 357


>gi|121535962|ref|ZP_01667756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosinus carboxydivorans Nor1]
 gi|121305454|gb|EAX46402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosinus carboxydivorans Nor1]
          Length = 364

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/370 (40%), Positives = 212/370 (57%), Gaps = 14/370 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           RVVVAMSGGVDSS+ AALL   GYDVIGVT+Q++ +   +       CC+   V DARRV
Sbjct: 6   RVVVAMSGGVDSSLTAALLVHQGYDVIGVTMQIWENDLPEIDPEHRGCCSLSAVNDARRV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV ++ E F+  V+  F   YAAG+TP PC+ CNR VKF  LL     L A 
Sbjct: 66  ADKLGIPYYVLNFREMFQETVVDYFIREYAAGKTPNPCIACNRYVKFEGLLQKALALDAQ 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D G+ R I+ + +D  +DQSY L+   Q  L     PLG+  K  
Sbjct: 126 YVATGHYARIEY---DKGRGRYILRKGVDRTKDQSYALYHLNQHTLRHFLMPLGEYTKVQ 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R +AR+ GL +A+K DSQ+ICF+    Y   ++         G+IV  +G+ILGRH G+
Sbjct: 183 TRQMARQFGLAVAEKPDSQEICFIPNDDYKSFLEEKAPETLRPGNIVDTHGRILGRHKGL 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQR+GLG+A+G+PL+VV LD   + VIVG  E +    +   ++N++      D 
Sbjct: 243 PLYTVGQRKGLGIAVGKPLYVVALDYERNEVIVGSDEDVFASELIAEDLNFIT----VDK 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR S    P  +    +G VYV F++ +  +  GQ+ VFY  D+    V+
Sbjct: 299 LASPLRVAAKIRYSAREAPATITPEREGAVYVRFDEPQRAITPGQSVVFYDGDT----VV 354

Query: 379 GGGIISGSKR 388
           GGGII  + R
Sbjct: 355 GGGIIRKAIR 364


>gi|16330399|ref|NP_441127.1| tRNA-specific 2-thiouridylase MnmA [Synechocystis sp. PCC 6803]
 gi|3122978|sp|P73755|MNMA_SYNY3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|1652889|dbj|BAA17807.1| sll0844 [Synechocystis sp. PCC 6803]
          Length = 358

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 216/373 (57%), Gaps = 23/373 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AALL R GY V+GVTL L       K KG CC+ + + DA  +C+
Sbjct: 4   KVVVGLSGGVDSSVAAALLHRQGYAVVGVTLWLM------KGKGQCCS-EGLVDAASICE 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H + D  + F+N +I      Y  G TPLPC  CN+ VKF  +L   +Q LG D 
Sbjct: 57  QLGVPHEIVDTRDLFQNHIIDYLVQGYGEGVTPLPCSQCNKAVKFGPMLQYAQQSLGIDK 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    ++  +R  + R +D ++DQSYFL+  +Q+ L    FPLG+  K   
Sbjct: 117 IATGHYARIRF---NEASQRYELLRAVDRQKDQSYFLYDLSQEILAATLFPLGEQTKTVT 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R LA E  L  A+K DSQD+C ++  G   D + +  A  A  G+IV L+G +LG H GI
Sbjct: 174 RQLAAEFDLSTAEKKDSQDLCLIEAHGSMRDFLDKYIAPKA--GEIVDLSGAVLGHHEGI 231

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R+S      Y++ +NW+   + E  
Sbjct: 232 HHYTIGQRKGLGIAAAEPLYVVKLDPVMNRVIVGDRQSAGSGECYVQRLNWV--SIPEPT 289

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +C V++R    PV V  +  +D  + + F++ + G+  GQA V Y  D    RVL
Sbjct: 290 A--PIRCEVQVRYRSAPVTVNAIPWHDQQIKLVFDEPQFGITPGQAAVLYDGD----RVL 343

Query: 379 GGGIISGSKRSDA 391
           GGGII   K   A
Sbjct: 344 GGGIICPQKSETA 356


>gi|255020959|ref|ZP_05293015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969750|gb|EET27256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 348

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/364 (42%), Positives = 212/364 (58%), Gaps = 21/364 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVA+SGGVDS+V AALL   G+D++GVTL+L+   +       CC  +D+ DA  +C 
Sbjct: 3   RIVVALSGGVDSAVAAALLADAGHDLVGVTLRLWPQSR-------CCDERDIEDAADLCA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + V DY +RFR A++ PF + Y AG TP PC  CN+ +KF+ L   +  LGAD L
Sbjct: 56  QLGIPYRVLDYRQRFREAIVEPFVADYLAGRTPNPCARCNQLLKFTALWQESAALGADFL 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R  VGDD + RR +    D  +DQSYFLFA   + L  LRFPLG+ +KE VR
Sbjct: 116 ATGHYVRLR-EVGDDWQLRRAV----DERKDQSYFLFAVPGELLPRLRFPLGEWRKEEVR 170

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             AR+ GL IA K DSQD+CF+  G     +K         GDIV   G +LG+H G+++
Sbjct: 171 TWARQRGLAIAAKGDSQDLCFIPDGDTGAFIKSQTQVEVRPGDIVDATGAVLGQHEGLVH 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG     P +V+ LD   +R+ VGP  +L      LR+ NW    L   +V 
Sbjct: 231 YTVGQRRGLGGGAAVPRYVLALDAKHNRLQVGPEAALFRGEARLRDCNW----LTTQSVA 286

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                 VK+R +  PVP  ++  D    ++ F   +  +  GQA V Y  D    R+LGG
Sbjct: 287 LDTPVTVKLRYAASPVPATLRLLDGAAAHLRFATPQRAITPGQAAVCYDGD----RLLGG 342

Query: 381 GIIS 384
           G I+
Sbjct: 343 GWIA 346


>gi|326791915|ref|YP_004309736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium lentocellum DSM 5427]
 gi|326542679|gb|ADZ84538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium lentocellum DSM 5427]
          Length = 360

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 211/363 (58%), Gaps = 12/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GY+VIG+T+Q++         G CC    V DARRVC 
Sbjct: 8   KVVVGMSGGVDSSVTAYLLKEQGYEVIGMTMQIWQEGAPEDSDGGCCGLSAVDDARRVCQ 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ HYV ++   F+  VI  F   Y    TP PC+ CNR VK+  +L    Q+GAD +
Sbjct: 68  KLDIPHYVVNFRSDFKKHVIDYFLDEYQNARTPNPCIACNRYVKWESMLQKALQIGADYI 127

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    + D+   R  + +   L +DQ+Y L+  TQ QL     PLGD  K+ VR
Sbjct: 128 ATGHYAR---VIRDEVTGRYSLKQSKTLAKDQTYALYNLTQHQLAHTLMPLGDYTKDEVR 184

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A+E+GL +A K DSQ+ICFV    Y   ++       + G+ V+ +G++LG+H GII+
Sbjct: 185 AIAKEIGLAVATKPDSQEICFVPDNNYAKYIEEETGKKPVVGNFVNKDGKVLGKHKGIIH 244

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+++G+P FV  +++ ++ V++G  E L    +   ++N++     E  + 
Sbjct: 245 YTIGQRKGLGLSLGKPGFVQRINQKTNEVVIGDNEDLFDTTVTANQVNFMPFEHLEGEM- 303

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               C  KIR +Q P P  ++  ++D +   F++ +  +  GQA V Y  D    +++GG
Sbjct: 304 ---HCLGKIRYNQAPQPCTIKMIDEDTIQCIFDEKQRAITPGQALVLYDGD----KLIGG 356

Query: 381 GII 383
           G I
Sbjct: 357 GTI 359


>gi|325679422|ref|ZP_08159007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 8]
 gi|324109019|gb|EGC03250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 8]
          Length = 356

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 208/363 (57%), Gaps = 13/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSS    LL   GY+V G T+ LYN+     R+ +CC+  DV DAR V  
Sbjct: 5   RVLAAMSGGVDSSAAVKLLLDKGYEVAGATMHLYNNEDIGIREKNCCSLNDVEDARLVAL 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +VF++ + F+  V+  F ++Y +G TP PC++CN+ +KF   L     LG D +
Sbjct: 65  KLGIDFHVFNFSDEFKMRVMDDFVNTYLSGGTPNPCIECNKHLKFGRFLERAELLGFDYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+ S     D+   R ++ R  D  +DQSY L+  TQ QL    FP+GDM K  +R
Sbjct: 125 ATGHYVTSHY---DEASGRWLLKRSADRAKDQSYVLYGMTQHQLAHTIFPVGDMNKTDIR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DSQDICF+  G Y   +    AG    GDIV  +G +LG+H G+I+
Sbjct: 182 ALAEENGLINAHKRDSQDICFIPDGDYAKFITEA-AGEQPAGDIVLSDGTVLGKHRGLIH 240

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRG+GV+  EPLFV   D   +++I+G  E L    +   E+N++      D + 
Sbjct: 241 YTVGQRRGVGVSYSEPLFVTSKDMAQNKLIMGTAEQLCSKTLTAGEVNFIT----VDKLT 296

Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              KC  + R  Q  VP  V Q +++ V V+F+K    ++ GQA VFY  +     V+GG
Sbjct: 297 SPLKCTAQTRYHQQDVPCTVFQIDENTVKVEFDKPHKAISKGQAVVFYDGE----YVVGG 352

Query: 381 GII 383
           G I
Sbjct: 353 GKI 355


>gi|295110441|emb|CBL24394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus obeum A2-162]
          Length = 373

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/364 (41%), Positives = 212/364 (58%), Gaps = 13/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L+ ++GYD  G TL+LY++ + S     +CC   D  DAR V 
Sbjct: 4   KAMIAMSGGVDSSVAAYLMVQNGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARSVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YVF   + FR++VI  FA +Y  G TP PC+DCNR +KFS LL   R+LG + 
Sbjct: 64  ARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGCEY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY R      D    R I+ + +D  +DQSY L+A TQ QL    FPLG   K+ +
Sbjct: 124 IASGHYARREQ---DPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGGYTKKEI 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A+E G   ADK DSQDICFV  G Y   +++     +  GD V   G++LG+H G I
Sbjct: 181 RHIAQEQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGKVLGKHKGQI 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGLG++  E L+V     +S+ VI+G ++ L  +  Y+ +IN +      D +
Sbjct: 241 HYTIGQRRGLGISAPESLYVCGKSLDSNEVILGGKQDLMSNYCYINDINLIP----WDHL 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               KC VK R  Q   P  V++  +D + + F++ +  V  GQA V Y  D     VLG
Sbjct: 297 DAPIKCKVKTRYRQPEQPATVEQIGEDLIKITFDEPQRAVTPGQAAVLYDDD----MVLG 352

Query: 380 GGII 383
           GG I
Sbjct: 353 GGTI 356


>gi|227824500|ref|ZP_03989332.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904999|gb|EEH90917.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 357

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 211/367 (57%), Gaps = 15/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ ++AMSGGVDSSV A L+   GY+ +G T++LYN+  A     +CC+ +DV DAR V 
Sbjct: 1   MKALIAMSGGVDSSVAAKLMLDQGYECVGCTMKLYNNPDAGCSSKTCCSIRDVEDARSVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + ++VF+Y + FR  V+  FA SY  G+TP PC+DCN+ +KF  L    ++LG D 
Sbjct: 61  VRLGMPYFVFNYMDEFRRDVMETFARSYTLGKTPNPCIDCNKFLKFGALYERAKELGCDT 120

Query: 141 LATGHYIRSRLYVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + TGHY R R       KR     + R  D ++DQSY L+  TQ+QL   +FPLGD +K 
Sbjct: 121 IVTGHYARIR-------KRNGCYELLRAKDPKKDQSYVLYNLTQEQLAHTQFPLGDYEKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R++A E G   + K DSQDICFV  G Y + V+RI +     G  + L+G+ +G H G
Sbjct: 174 HTREIAEESGFINSHKPDSQDICFVPNGTYTEAVQRILSYEPQPGPFLTLDGKEIGTHKG 233

Query: 259 IINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           II YTIGQ + LG+   + PL+V+ +D   + VIVGP ++L      ++E NW+  G   
Sbjct: 234 IIYYTIGQHKKLGLPQPDGPLYVIAIDPKKNAVIVGPSQALFRRDAAVKEANWI-SGKVP 292

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA    F C VK+R  Q+  P  V     D   + F++ +  +  GQ+ V Y        
Sbjct: 293 DAP---FACLVKVRYRQEAQPAIVTPTGSDTFSILFDEPQRAITPGQSAVLYGLGDETDV 349

Query: 377 VLGGGII 383
           V+GGGI+
Sbjct: 350 VIGGGIL 356


>gi|312143962|ref|YP_003995408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904613|gb|ADQ15054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium sp. 'sapolanicus']
          Length = 357

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 217/371 (58%), Gaps = 23/371 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V++AMSGGVDSSV AALLK  GY+VIG T+ ++ +  +A+ R+  CC+   + DA+RV 
Sbjct: 3   KVMIAMSGGVDSSVAAALLKEKGYEVIGGTMHIFPDYEEATDREDHCCSYSAIRDAKRVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H+VF+ ++ F+  VI  F   Y+   TP PCV CN+ +KF  LL   R++G D 
Sbjct: 63  QKLEIPHFVFNLKDEFQEKVIDYFVYEYSKARTPNPCVMCNKKIKFDALLRKAREIGCDY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R ++ +  D  +DQSY L+   Q+QL    FPLGD  K+ +
Sbjct: 123 IATGHYSKIEKNNG-----RYLLKKGRDESKDQSYMLYVLNQEQLSRALFPLGDFTKQEI 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A+E+G +I +K++SQ+ICFV    Y   +      I+  G I+   G  +G HNGI 
Sbjct: 178 RQKAKELGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISKPGPILDSEGNKVGTHNGIS 237

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG----DGLF 316
           NYTIGQRRGLGVA+G P +VV LD +++ VI+G  E +    ++  +IN +     DG  
Sbjct: 238 NYTIGQRRGLGVALGYPAYVVKLDPDNNAVILGEDEEVFSKGLFAEDINIIPFSSLDGKI 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E A         +IR +  PVP  +++  +D + V+F+ S+  V  GQ+ VFY  D    
Sbjct: 298 EVA--------AQIRYNSYPVPAIIEKIGEDKIKVEFKDSQRAVTPGQSVVFYLDD---- 345

Query: 376 RVLGGGIISGS 386
            V GGGII  S
Sbjct: 346 LVFGGGIIKES 356


>gi|160881034|ref|YP_001560002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium phytofermentans ISDg]
 gi|205813731|sp|A9KPI9|MNMA_CLOPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160429700|gb|ABX43263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium phytofermentans ISDg]
          Length = 357

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 215/365 (58%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++     +  +  G CC    V DARRV
Sbjct: 3   KVVVGMSGGVDSSVAAYLLKEAGYDVIGVTMQIWQDEDNQTVEENGGCCGLSAVDDARRV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++++ +YV +++  F+  V+  F   Y AG TP PC+ CNR VK+  LL+ + Q+GAD
Sbjct: 63  ANSLDIPYYVMNFKSEFKANVMDYFVKEYQAGRTPNPCIACNRYVKWESLLTRSLQIGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+    +G  R  + +     +DQ+Y L+  TQ QL     P+G+  KE 
Sbjct: 123 YIATGHY--ARIVTLPNG--RFALKKSATAAKDQTYALYNLTQDQLSKTLMPVGEYTKEE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL +A+K DSQ+ICFV    Y   ++       + G+ V   G ILGRH GI
Sbjct: 179 VREIAAKIGLLVANKPDSQEICFVPDNNYAGFIEDYTGQKIIPGNFVDTKGNILGRHQGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQR+GLG+A+G P FVV +   ++ V++G  + +   R+   ++N +    FE  
Sbjct: 239 IHYTVGQRKGLGIALGRPAFVVEIRPETNEVVIGSNDDIFTDRLIANKLNAMAVEEFE-- 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             DG +   KIR + +     +++ +D  +  +FE  +  V  GQA VFY  D     V+
Sbjct: 297 --DGMEVIAKIRYNHEGSKCTIRKVSDTEIACEFETPQRAVTPGQAVVFYQGDI----VV 350

Query: 379 GGGII 383
           GGG I
Sbjct: 351 GGGTI 355


>gi|304436306|ref|ZP_07396284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370711|gb|EFM24358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 361

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/364 (41%), Positives = 209/364 (57%), Gaps = 14/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVC 80
           RVVVAMSGGVDSSV AALL+  GY+V+GVT++L    + +   G SCC+   V DARRV 
Sbjct: 5   RVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEARDADLDGRSCCSLSSVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D+ + F+  VI  F   YA G TP PC+ CNR +KF  LL  TR LGA  
Sbjct: 65  DILGIPHYVMDFTDPFQRLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLEKTRALGAQY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+   +DG     + + +D  +DQSY L+  TQ+ +  + FPLGD +K+ +
Sbjct: 125 IATGHY--ARITHTEDGTYH--LRKGIDAAKDQSYVLYHLTQEMMDHVLFPLGDYRKDEI 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL +A K++SQ+ICFV +  Y   ++         G I    G +LG H GI 
Sbjct: 181 RRMAEDYGLPVAHKAESQEICFVPRDDYKSYLRTHAPQTMQTGAITDRTGHVLGTHEGIA 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+A   PL+V  LD + +RVIVG  + +  H +   +++W          
Sbjct: 241 FYTIGQRRGLGIAAEHPLYVTALDASENRVIVGASDEIFAHALTASDLSW----TLSRPP 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR  +     +++   DG V V F + +  V  GQ+ VFY  D+    VLG
Sbjct: 297 HKPRRVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA----VLG 352

Query: 380 GGII 383
           GG I
Sbjct: 353 GGSI 356


>gi|148656262|ref|YP_001276467.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus sp. RS-1]
 gi|205816909|sp|A5UV64|MNMA_ROSS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148568372|gb|ABQ90517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseiflexus sp. RS-1]
          Length = 373

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 154/377 (40%), Positives = 215/377 (57%), Gaps = 22/377 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++VAMSGGVDSS+ AALL   G+DV GVTL L+        +  CC+ +    ARRVC 
Sbjct: 3   KIMVAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YVF+Y+  FR  VI  F   YA+G TP PC++CNR +KF  LL+  R LG D +
Sbjct: 63  QLGIPYYVFNYQREFRRYVIEYFLREYASGFTPNPCLECNREIKFRALLARARTLGFDYV 122

Query: 142 ATGHYIRSRL----YVGDDG------KRRRI---MCRPMDLERDQSYFLFATTQQQLCDL 188
           ATGHY R R     + G+D       + +R    + R +D E+DQSY L+   Q  L  L
Sbjct: 123 ATGHYARIRADETRHNGEDAGLPPAERAQRTTYRLLRAVDREKDQSYMLYMLGQDDLARL 182

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G+  K  VR +A   GL  A++ +SQDICFV  G Y ++++         G I+ L
Sbjct: 183 IFPIGEYTKAEVRAMAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDL 242

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G+ +GRH G+  YTIGQRRGLG+A G+P++V  LD   + VIVGP  +L    +    +
Sbjct: 243 EGREVGRHQGLPLYTIGQRRGLGIATGQPMYVTALDVARNAVIVGPESALRRESLRAEWV 302

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
            ++  G++ +A    F C  +IR+  D VP  V   + G V V F + +  V  GQA VF
Sbjct: 303 TFV-SGMWPEAP---FDCLAQIRAHADAVPARVIPGEAGTVDVHFSRPQRAVTPGQAIVF 358

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  D     VLGGG I+
Sbjct: 359 YDGDV----VLGGGRIA 371


>gi|284047421|ref|YP_003397760.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidaminococcus fermentans DSM 20731]
 gi|283951642|gb|ADB46445.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidaminococcus fermentans DSM 20731]
          Length = 356

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 208/366 (56%), Gaps = 14/366 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79
           M+ ++AMSGGVDSSV A L++  GYD IG  ++LYN+  A      +CC+  DV DAR V
Sbjct: 1   MKALIAMSGGVDSSVSAKLMQDAGYDCIGCNMKLYNNPDAGYCSTKTCCSLSDVEDARSV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  + +  YVF+Y E F++ V+  FA SY  G TP PC+DCN+ +KF  L    R+LG D
Sbjct: 61  CARLGMPFYVFNYTEEFKHDVMEKFARSYTLGHTPNPCIDCNKFLKFGALYQRARELGCD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R R    ++   +  + + +D ++DQSY L+  TQ+QL    FPLG   K  
Sbjct: 121 CVVTGHYARIR---KNETTGKYELLKALDPKKDQSYVLYNLTQEQLAHTCFPLGGYHKTH 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R++A E G   + K DSQDICFV  G+Y D V+RI       G  + L G ++G+H GI
Sbjct: 178 TREIAEENGFINSHKPDSQDICFVPNGQYTDAVQRILDYRPQPGPFLDLEGNVIGQHRGI 237

Query: 260 INYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I YT+GQ + LG+   + PL+VV +D   + ++VGP E+L   +  + E NW+   +   
Sbjct: 238 IYYTLGQHKHLGLNQPDFPLYVVKIDPKKNAIVVGPSEALFSRKASVGEANWISGEVPAG 297

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V    +C VK+R  QD  P  V     D   + F++ +  +  GQA V Y  +     V
Sbjct: 298 PV----RCQVKVRYRQDAQPATVTPTGKDTFTIQFDEPQRAITPGQAAVLYDGEV----V 349

Query: 378 LGGGII 383
           LGGG I
Sbjct: 350 LGGGTI 355


>gi|325265024|ref|ZP_08131751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. D5]
 gi|324029714|gb|EGB91002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. D5]
          Length = 356

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 217/366 (59%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    R   +  G CC    V DARRV
Sbjct: 3   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVQEENGGCCGLSAVEDARRV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GA+
Sbjct: 63  AAELEIPYYVMNFKQEFKEHVIDYFVEEYRNGRTPNPCIACNRYVKWESLLHRSMAIGAE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+   D+G  R  + R   L +DQ+Y L+  TQ+QL     P+G+  K+ 
Sbjct: 123 YIATGHY--ARVVKLDNG--RFTLRRSATLAKDQTYALYNLTQEQLEHTLMPVGEYSKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           VR +A ++GL +A+K DSQDICFV  G Y   ++   AGI + EG+ V  +G++LGRH G
Sbjct: 179 VRRIAEKIGLMVANKPDSQDICFVPDGDYASYIEE-TAGIRMPEGNFVSSDGRVLGRHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YT+GQR+GLG+A+G P FV+ +  +++ V++G  E    H +    +N++     ED
Sbjct: 238 ITHYTVGQRKGLGLALGYPAFVLEIRPDTNEVVIGTNEESMTHTLKADRLNFMS---VED 294

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  + F KIR +       +++   D V   FE+ +  V  GQA VFY  +     V
Sbjct: 295 -LTEPLRVFTKIRYNHKGAWCIIEKTGTDEVLCTFEEPQRAVTPGQAVVFYDGEY----V 349

Query: 378 LGGGII 383
           LGGG I
Sbjct: 350 LGGGTI 355


>gi|255659674|ref|ZP_05405083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mitsuokella multacida DSM 20544]
 gi|260848239|gb|EEX68246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mitsuokella multacida DSM 20544]
          Length = 366

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 208/374 (55%), Gaps = 14/374 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80
           +VVVAMSGGVDSS+ AALLK  GY+ IGVT++L   SR   +    CC+   V DARRV 
Sbjct: 5   KVVVAMSGGVDSSLTAALLKEQGYEAIGVTMRLSEESRDFDENDRGCCSLSSVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + HY  +++E F+  VI  F + YA G TP PC+ CNR VKF  LL    +LGAD 
Sbjct: 65  EIIGIPHYTMNFKEMFQEKVIDYFLADYAKGWTPNPCIACNRYVKFEGLLQKAMELGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    +  D   R ++ + +D  +DQSY L+   QQ L     PLGD  K   
Sbjct: 125 VATGHYAR----IAQDESGRYVLKKGIDTHKDQSYALYHLNQQSLAHFLMPLGDYTKVET 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A    L +A K DSQ+ICFV    Y   ++  N      GDIV   G +LG H G+ 
Sbjct: 181 REMAERYKLPVAHKPDSQEICFVPHDDYKAYLRAKNPSCLHPGDIVDKEGHVLGHHEGVP 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A  EPL+VV LD   +RV+VG    +    +   ++NW+      DA+
Sbjct: 241 LYTIGQRKGLGIAHPEPLYVVDLDMAHNRVVVGGAGDVFSDGLIAGDLNWIAI----DAL 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   K+R  +      V+    G V V F + +  V  GQ+ VFY  D+    V+G
Sbjct: 297 EAPIEVTAKVRYGRREGRAHVEPLAGGKVRVHFAEPQRAVTPGQSVVFYAGDT----VVG 352

Query: 380 GGIISGSKRSDAVE 393
           GGII  + R +A E
Sbjct: 353 GGIIEKAIRKEAAE 366


>gi|163781841|ref|ZP_02176841.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883061|gb|EDP76565.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 356

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/376 (42%), Positives = 222/376 (59%), Gaps = 30/376 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77
           MRV V MSGGVDSSV A L+K  G++VIGVTL+ +++ +A + +G+   CC+ +DV DA 
Sbjct: 1   MRVAVGMSGGVDSSVTALLMKEKGHEVIGVTLR-FHTIEACEVEGTHNVCCSPKDVQDAA 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + + H  FD+E  F+  VI  F   Y+ G TP PC  CNR VK        R + 
Sbjct: 60  RVSQKLGIPHLTFDWERIFKERVIDYFVEEYSRGRTPNPCAVCNREVKTGYFARYLRAVA 119

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D LATGHY R    + +D    R++ R  D +RDQSYFL    ++ L  L FPLG+M 
Sbjct: 120 DIDRLATGHYAR----IEEDPSFGRVIKRGTDRKRDQSYFLALVRREDLDLLEFPLGNMT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           KE VR+LAR  GL++ADK DSQ++CF+     G+Y + +  +      EG+I H++G+ L
Sbjct: 176 KEEVRELARSYGLEVADKRDSQEVCFLMGKSPGEYLEKIVGLR-----EGEIRHVSGKTL 230

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LG 312
           GRH+GI N+TIGQRRGLG++  +PL+VV +D +++ V VG  E L   ++Y+RE+N  + 
Sbjct: 231 GRHSGIYNFTIGQRRGLGISYSKPLYVVDIDASTNTVFVGEEEYLYNDKLYVRELNLHVP 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              +ED          +IR    PV V  V+R  DG  V F +   G+  GQ   FY+ D
Sbjct: 291 MERWEDVS-------AQIRYRHSPVRVESVKRTSDGYEVKFREEVRGITPGQVVAFYSGD 343

Query: 372 SNEARVLGGGIISGSK 387
                +LGGGII   K
Sbjct: 344 I----LLGGGIIEAYK 355


>gi|291519700|emb|CBK74921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 354

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 211/365 (57%), Gaps = 15/365 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           M+ ++AMSGGVDSSV A L+K +GY+ IG T++LY +         +CC+  DV DA+ V
Sbjct: 1   MKALIAMSGGVDSSVAALLMKENGYECIGCTMKLYGNEDVDLSDTSTCCSLDDVQDAKDV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + HY ++++++F+  VI  F   Y    TP PC++CN+ +KF +L    ++LG D
Sbjct: 61  ARKLGMLHYTWNFKDQFKEKVIDNFTYCYEHAMTPNPCIECNKHLKFCELYRRAKELGCD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R R    D+G +   + +  D  +DQSY L++ TQ +L    FPLG+  K+ 
Sbjct: 121 KIVTGHYARVR--KCDNGYQ---LLKGKDASKDQSYVLYSMTQDELAHTDFPLGEYSKDE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A +     A+K DSQDICFV  G Y   +KR        GD V + G +LGRH G+
Sbjct: 176 IRRIAEKNEFVNANKPDSQDICFVPNGDYVSALKRFTGKEYEPGDFVDMEGNVLGRHKGL 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG++   PL+VV LD   ++V++G  E L    +Y+ +INW+G     + 
Sbjct: 236 VCYTIGQRKGLGISAAYPLYVVKLDTEKNQVVLGKNEDLFSRDVYVEDINWIG----PEE 291

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + + F+C  K+R      P  VQR       + F++ +  +  GQ+ VFY  +     VL
Sbjct: 292 LPETFRCAAKVRYRMVEQPCEVQRLGKTSAKILFDEPQRAITPGQSAVFYDGEI----VL 347

Query: 379 GGGII 383
           GGGII
Sbjct: 348 GGGII 352


>gi|210615810|ref|ZP_03290791.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787]
 gi|210150146|gb|EEA81155.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787]
          Length = 362

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 214/369 (57%), Gaps = 15/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK +GYDVIGVT+Q++    R   +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAYLLKEEGYDVIGVTMQIWQDEDRAIQEENGGCCGLTAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  ASDLGIPYYVMNFKKEFKENVIDYFVDEYLNGRTPNPCIACNRYVKWESLLKRSMDIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + R   L +DQ+Y L+  TQ+QL     P+G   KE
Sbjct: 125 YIATGHYARIEKLPNG-----RYSLRRSATLAKDQTYALYNLTQEQLKRTLMPVGAYAKE 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL +A+K DSQDICFV  G Y + ++        EG+ V  +G ++GRH G
Sbjct: 180 EVREIAEKIGLRVANKPDSQDICFVPDGNYAEFIEETIEKKIPEGNFVLSDGTVVGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YT+GQR+GLG+++G P+FV+ +   ++ V++G  E    + +   ++N++     ++
Sbjct: 240 ITHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVIGSNEESLTYTLRANQLNFMSIEDLKE 299

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  + F KIR +       V+R  +D V   FE+ +  V  GQA VFY  D     V
Sbjct: 300 G--EKIRVFAKIRYNHKGAWCEVERIGEDEVRCTFEEQQRAVTPGQAVVFYDGDY----V 353

Query: 378 LGGGIISGS 386
           LGGG I G 
Sbjct: 354 LGGGTIIGE 362


>gi|254519285|ref|ZP_05131341.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA]
 gi|226913034|gb|EEH98235.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA]
          Length = 360

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 219/367 (59%), Gaps = 17/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GY+VIGVT++ ++       +R+G CC+   V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMKHFDDEDEDYIEREGGCCSLSSVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV ++++ F+  VI  F   Y  G+TP PC+ CN+ +KF + L   + +GAD
Sbjct: 64  ADKLGIPFYVLNFKDSFKEKVIDYFVQEYMEGKTPNPCIACNKHIKFDEFLRRAKGIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +++   +DG  R ++ +  D ++DQ+Y L+  TQ+QL     P GD  K+ 
Sbjct: 124 YVATGHY--AKIEKNEDG--RYLLIKADDDKKDQTYALYNFTQEQLSQTLMPCGDYTKDK 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A+E+GL + +K DS++ICF+    +   +         EG+ V  NG ILG+H GI
Sbjct: 180 IREIAKEIGLAVHNKKDSEEICFIPDNNHGKYILNARPNQVREGNFVDKNGNILGKHKGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318
           + YTIGQR+GLG+A+G P+FV  ++  ++ V++GP E +    +  +++N++  + L E+
Sbjct: 240 VYYTIGQRKGLGLALGTPIFVTDINPRTNEVVIGPEEDVFKTDLVAKDVNFIPFNSLSEE 299

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             V     F K+R    P    +    DG V V F++ +  +  GQ+ VFY  +     V
Sbjct: 300 ITV-----FAKVRYQAKPSEAIISPLADGRVKVSFKEKQRAITKGQSVVFYDGNV----V 350

Query: 378 LGGGIIS 384
           +GGGII 
Sbjct: 351 VGGGIIE 357


>gi|310821277|ref|YP_003953635.1| tRNA-specific 2-thiouridylase mnma [Stigmatella aurantiaca DW4/3-1]
 gi|309394349|gb|ADO71808.1| tRNA-specific 2-thiouridylase MnmA [Stigmatella aurantiaca DW4/3-1]
          Length = 348

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/364 (43%), Positives = 211/364 (57%), Gaps = 18/364 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSS  AALLK  G++VIG+TL+++ S +   + GSCC+  D+ DAR V 
Sbjct: 1   MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKAQCGSCCSPDDIDDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV + EE F++ VI PF  SY  G TP+PCV CNR VKF+ LL   R LGA  
Sbjct: 60  QKLDIPFYVANAEEIFKDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGAQ- 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    V  +G  R ++ R +DL +DQSYFLF   Q +L D+ FP+G M K  V
Sbjct: 119 LATGHYAR----VEREGD-RHVLRRAVDLAKDQSYFLFTLGQAELADVLFPVGGMTKAEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A    L  + K +S +ICFV  G Y   V+++ AG    GDI+  +G +LG H GI 
Sbjct: 174 RAVAERHALPTSQKPESMEICFVPDGDYAGFVEKV-AGPQPSGDIIDTDGHVLGTHGGIH 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGL +  GE  +V  L+  ++RV+VG   +       L + +W+      D  
Sbjct: 233 RFTVGQRRGLNLGGGEARYVQRLEPEANRVVVGTASAAGRDAFGLLQPHWVDAPPAPDQT 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V+     V+IR     VP  V+ +  G V V  E     V  GQA V Y  D    RVLG
Sbjct: 293 VE-----VRIRHRHAGVPGRVEISTHGLVSVRLEAPARAVTPGQAAVVYAQD----RVLG 343

Query: 380 GGII 383
           GG I
Sbjct: 344 GGWI 347


>gi|20807693|ref|NP_622864.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Thermoanaerobacter tengcongensis MB4]
 gi|24638309|sp|Q8RAH7|MNMA1_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|20516242|gb|AAM24468.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Thermoanaerobacter tengcongensis MB4]
          Length = 364

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 216/370 (58%), Gaps = 14/370 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           RVVV MSGGVDSSV A LLK  G++VIGVT++++     KA     SCC+ + ++DA++V
Sbjct: 6   RVVVGMSGGVDSSVTAYLLKEQGFEVIGVTMRVWVDPYGKARDDDKSCCSLKAIHDAKKV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + HY  +  E F + ++  F   Y  G TP PCV CNR +KF DLL    +LGA 
Sbjct: 66  AEILGIPHYTVNLSEVFYDKIVKYFIDEYLKGRTPNPCVFCNRFIKFGDLLEKAHELGAY 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      D+ ++R ++ + +D ++DQSY L+  TQ+QL    FPLG+  KE 
Sbjct: 126 YIATGHYVRKEY---DEDRKRYLLKKGLDFKKDQSYMLYRLTQEQLKHALFPLGNYTKEE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA ++GL +ADK +SQ+ICF+    Y   +KR        G+   ++G  LG H GI
Sbjct: 183 VRALAEKIGLPVADKRESQEICFIPDNDYKAFIKRQIKKDVKPGEFRDIHGNFLGYHKGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           INYTIGQR+GLG++   PL+VV +D  ++ VIVG +E +    +     N++     E+ 
Sbjct: 243 INYTIGQRKGLGLSSDRPLYVVDIDPENNVVIVGHQEDVWGEELISSNNNFISIEKLEEE 302

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR ++++   +     DD V V F + +  +  GQ+ VFY  D     V+
Sbjct: 303 I----KVTAKIRYTAKEDEAIIKPYGDDKVLVRFLRPQRAITPGQSVVFYDGDV----VV 354

Query: 379 GGGIISGSKR 388
           GGGII    R
Sbjct: 355 GGGIIEKKVR 364


>gi|167629936|ref|YP_001680435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Heliobacterium modesticaldum Ice1]
 gi|205816855|sp|B0TFA7|MNMA_HELMI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167592676|gb|ABZ84424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Heliobacterium modesticaldum Ice1]
          Length = 385

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 202/365 (55%), Gaps = 16/365 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSSV AALL   GYDVIGVTLQ++        +G CC+   V DA+RV   
Sbjct: 5   VVVAMSGGVDSSVTAALLLEQGYDVIGVTLQIWPKDAPEGAEGGCCSLSAVEDAKRVASK 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V HYV ++ + F   VI  F   Y AG+TP PC+ CNR +KF  LL  +  LGA  +A
Sbjct: 65  LGVPHYVLNFRDYFETEVIEYFGREYLAGQTPNPCIRCNRVIKFEGLLQKSLALGAAKVA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      D    R  + R +D  +DQSY LF  TQ+QL    FPLG   K  +R+
Sbjct: 125 TGHYARIEQ---DSATGRYRLGRGIDANKDQSYALFNMTQEQLSRTLFPLGGFTKPEIRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261
            A ++GL +A K DSQ+ICF+    Y   + +R        G  V   G ++G H G+  
Sbjct: 182 KAAQLGLAVASKPDSQEICFIPDNDYRRFLEERYPDHRFQPGPFVDQEGNVIGTHRGLPF 241

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDAV 320
           YT+GQR+GLGVA G P +V+ LD   + V++GP E+++  R+   ++NW+   GL     
Sbjct: 242 YTVGQRKGLGVAFGFPAYVIALDVEHNAVVIGPDEAVKGRRLLADDLNWIDIAGLKAPME 301

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           V+      KIR S  P    +    DG  V V+F   +  +  GQA VFY  D     V+
Sbjct: 302 VE-----AKIRYSASPAIAVISPVKDGSAVIVEFAAPQRAITPGQAVVFYRGDW----VV 352

Query: 379 GGGII 383
           GGG I
Sbjct: 353 GGGTI 357


>gi|149921054|ref|ZP_01909513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Plesiocystis pacifica SIR-1]
 gi|149818058|gb|EDM77515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Plesiocystis pacifica SIR-1]
          Length = 367

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 214/371 (57%), Gaps = 16/371 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79
           MRVV AMSGGVDSSV AAL+   G++VIG+T+ LY+++   K R G+CC+  ++  ARR 
Sbjct: 1   MRVVCAMSGGVDSSVAAALMVEAGHEVIGLTMALYDAKGERKGRGGTCCSPAEIDLARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + V HY  D  ERF+ AVI  FA  Y AG TP PC  CN  VKF  LL+  R LGA+
Sbjct: 61  CDLLGVPHYTVDERERFQAAVIDDFAREYLAGRTPNPCARCNEHVKFGPLLARARALGAE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +L TGHY +       DG+    + R +D  +DQSYFLFA  ++ L ++ FPLG   K  
Sbjct: 121 LLVTGHYAQIV-----DGEAGPALHRGVDASKDQSYFLFAMGRETLAEVAFPLGAWSKAQ 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE------GDIVHLNGQIL 253
           VR+ ARE+G+  AD  DSQ++CFV  G + +VV+     + L+      G I   +G +L
Sbjct: 176 VREKARELGMPNADAPDSQELCFVPGGDHGEVVEARAKALGLDTARLEPGPIRDESGAVL 235

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H GI   T+GQRRGLGV+   P +V+ +  +   V+VG  E LEV  + + +   L D
Sbjct: 236 GEHRGIHRVTVGQRRGLGVSADRPRYVLRVLPSERAVVVGDPEGLEVRELMVGDFRALAD 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               + +    +  V+ RS+  P  V +   +  + V F++    VA GQA V Y  + +
Sbjct: 296 LPVGEPIA--ARVQVRHRSAASPATVEIL-GEGALKVRFDQPIRAVAPGQAAVVYAGERD 352

Query: 374 EA-RVLGGGII 383
              RVLGGG I
Sbjct: 353 AGDRVLGGGWI 363


>gi|292670858|ref|ZP_06604284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas noxia ATCC 43541]
 gi|292647479|gb|EFF65451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas noxia ATCC 43541]
          Length = 365

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 153/372 (41%), Positives = 214/372 (57%), Gaps = 14/372 (3%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQD 72
           +++  K  RVVVAMSGGVDSS+ AALL+  GYDV+GVT++L   +R A     SCC+   
Sbjct: 1   MERKMKKERVVVAMSGGVDSSLAAALLQERGYDVVGVTMRLSAENRDAPSNDRSCCSLIS 60

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DARRV D + + HYV D+ E F++AVI  F + Y  G TP PC+ CNR +KF  LL  
Sbjct: 61  VDDARRVADVLGIPHYVMDFTEPFQHAVIDYFFNEYLHGRTPNPCIACNRFIKFEGLLHK 120

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++LGA  +ATGHY  +R+  G DG  R  + + +DLE+DQSY L+   Q+ L  +  PL
Sbjct: 121 SKELGASYIATGHY--ARIDHGKDGTYR--LRKGLDLEKDQSYVLYHMNQEILAHVLLPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G   K   R +A +  L +A K++SQ+ICFV +  Y   ++         G+IV   G +
Sbjct: 177 GVFSKHETRRMAEQYHLPVAYKAESQEICFVPRDDYKSYLREKRPESCCPGNIVDRAGNV 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H GI  YTIGQR+GLG+A  +PL+V  LD   +RV+VG    +    +   ++NW  
Sbjct: 237 LGIHEGIAFYTIGQRKGLGIAATQPLYVTALDTLHNRVVVGTANEVYARGLTASDLNW-- 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                 A+ +      KIR  +      +  + DG V+V F + +  V  GQ+ VFY  D
Sbjct: 295 --TMPIALDNPRTVQAKIRYGKRSASATITSHKDGEVHVLFSELQRAVTPGQSIVFYEDD 352

Query: 372 SNEARVLGGGII 383
                VLGGGII
Sbjct: 353 V----VLGGGII 360


>gi|309388972|gb|ADO76852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium praevalens DSM 2228]
          Length = 360

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 17/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V++AMSGGVDSSV AALLK +GY+VIG T+ ++ +  +A+ R+  CC+   V DA+RV 
Sbjct: 3   KVMIAMSGGVDSSVAAALLKEEGYEVIGGTMHIFPDYEEATDREDHCCSYSAVRDAKRVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H+VF+  E F+  VI  F   Y+ G TP PCV CN+ +KF+ L     ++G D 
Sbjct: 63  QKLEIPHFVFNLREEFQEKVIDYFVDEYSLGRTPNPCVMCNKEIKFAALHKKAIEIGCDY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY +     G     R I+ + +D  +DQSY L+   Q+QL    FPL +  K  +
Sbjct: 123 IASGHYAKIEKENG-----RYILKKGLDENKDQSYMLYVLNQEQLSQTLFPLSEYTKSEI 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+ A+ +G +I +K++SQ+ICFV    Y   +      I+  G I+   G  +G H G+ 
Sbjct: 178 REKAKNLGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISNTGPILDSEGNKVGEHEGLA 237

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGLG++MG P++V  LD   + VIVG  +S+    +   E+N++    FED  
Sbjct: 238 HYTIGQRRGLGISMGYPIYVTNLDYEKNAVIVGKDKSVFSDGLIAEELNFIP---FED-- 292

Query: 321 VDG-FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +DG  +   +IR +  PV  ++++  +D V V+FE+++  V  GQ+ VFY  D     VL
Sbjct: 293 IDGRMEVEAQIRYNSFPVKAYIEKIKNDEVKVEFEEAQRAVTPGQSVVFYLGD----LVL 348

Query: 379 GGGIISGS 386
           GGGII  S
Sbjct: 349 GGGIIKKS 356


>gi|166367576|ref|YP_001659849.1| tRNA-specific 2-thiouridylase MnmA [Microcystis aeruginosa
           NIES-843]
 gi|205816884|sp|B0JVR4|MNMA_MICAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166089949|dbj|BAG04657.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Microcystis aeruginosa NIES-843]
          Length = 352

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/367 (42%), Positives = 216/367 (58%), Gaps = 21/367 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F+  +I    S Y AG TPLPC  CN+ VKFS +L   R+ L  D 
Sbjct: 56  QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLQTDT 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    ++   R  + R +D  +DQSYFL+  TQ  L    FPLG+  K   
Sbjct: 116 IATGHYARIRFSPENN---RYQLLRAVDQNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGI 259
           R +A+E GL  ADK DSQD+C ++   +  +   ++  IA+ EGDIV L+G++LG+H+GI
Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIE--AHGTMRSFLDKYIAVSEGDIVDLDGKVLGKHSGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+G+G+A  EPL+VV LD   +RVIVG RES       +  +NW+   + E  
Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSAACLVGRMNWV--SIAEPT 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +  V+ RS   PV V    N+  V + F++ +  +  GQA V Y  +     VLG
Sbjct: 289 TPIRAQVQVRYRSPAVPVNVIPLENNQ-VKLVFDQPQFSITPGQAAVIYEGEI----VLG 343

Query: 380 GGIISGS 386
           GGIISG+
Sbjct: 344 GGIISGA 350


>gi|210622568|ref|ZP_03293250.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275]
 gi|210154151|gb|EEA85157.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275]
          Length = 357

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 221/364 (60%), Gaps = 16/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK  GYDVIGV + L N     +++        + DARRV +
Sbjct: 4   KVMLGMSGGVDSSVAAYLLKEQGYDVIGVNMMLSNDNTEEEKR---MTEDSIRDARRVAE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +V D+   F+  VI  F   YA G TP PC+ CN+ +KF     V  + G D +
Sbjct: 61  KLDIPLHVLDFRREFKEKVIDDFIKEYAEGRTPNPCIVCNKFIKFGLFFDVAEKFGCDYV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D+   R ++ +    ++DQ+Y L+   Q+QL  +  P+G+ +K++VR
Sbjct: 121 ATGHYARVER---DEKTGRLVLKKGESAKKDQTYNLYNIKQEQLERILLPIGNYEKDTVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
           ++A+++GLD+ +K DSQ+ICF++   Y   +K  N+ I ++ G+ V  +G +LG+HNGII
Sbjct: 178 EIAKKIGLDVHNKKDSQEICFIKDNDYVRYLKE-NSDIKIKTGEFVEADGTVLGKHNGII 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYTIGQR+GLG+A G+P+FVV ++   +RV++G  + L    + ++++N +    F+ A 
Sbjct: 237 NYTIGQRKGLGIAFGKPMFVVDINAKKNRVVLGSNDDLFKKELVIKDVNTIP---FDFAD 293

Query: 321 VDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           VD FK + K+R +  P +    + +D+   V FE+++  +  GQ+ V Y  D     ++G
Sbjct: 294 VDEFKVYAKVRYAAKPSLATVTKLSDNTAKVVFEEAQRAITKGQSLVMYDGDI----LVG 349

Query: 380 GGII 383
           GGII
Sbjct: 350 GGII 353


>gi|197303193|ref|ZP_03168235.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
           29176]
 gi|197297733|gb|EDY32291.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
           29176]
          Length = 358

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   + +  +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENTVQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +YV ++++ F+ +VI  F   Y AG TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  AAAIGIPYYVMNFKDEFQKSVIEYFTKEYLAGRTPNPCIACNRYVKWEALLQRSLSIGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +      R  + R   +E+DQ+Y L+  TQ+QL     P+G+  K+ 
Sbjct: 125 YIATGHYAR----IEHLPNGRYAIRRSATMEKDQTYALYNLTQEQLARTLMPVGEYSKDR 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A E+GL +A K DSQDICFV  G Y   ++     +   G+ V   G++LG+H GI
Sbjct: 181 IREMADEIGLLVAHKPDSQDICFVPDGDYASFIENTTDQVLPTGNFVTPEGKVLGKHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQR+GLG+A+G P FV+ +   ++ V++G  E    + +   E+N++      + 
Sbjct: 241 IHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTYTVRANELNFMS----VEQ 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  + F KIR +       V+R  +D +   F++       GQA V Y  +     VL
Sbjct: 297 ITEPVRIFAKIRYNHKGAWCTVERTGEDEIVCTFDEPIRAATPGQAVVLYDGE----YVL 352

Query: 379 GGGII 383
           GGG I
Sbjct: 353 GGGTI 357


>gi|219849660|ref|YP_002464093.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aggregans DSM
           9485]
 gi|254811448|sp|B8G5F1|MNMA_CHLAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219543919|gb|ACL25657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus aggregans DSM 9485]
          Length = 359

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 158/364 (43%), Positives = 218/364 (59%), Gaps = 15/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSS+ AALL+  G+ V GVT+ L++  +   R+  CCA +    ARRVC  
Sbjct: 4   VLVAMSGGVDSSLAAALLQEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAATSARRVCAL 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  YVF+Y+  FR  VI  F  +Y  G TP PCV+CNR +KF  LL   R LG D +A
Sbjct: 64  LGIPFYVFNYQREFRRHVIEYFIRAYTHGLTPNPCVECNRMIKFRALLDRARALGFDAVA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    V DD  R ++  R +D E+DQSY L    Q  L  L FP+G+  K+ VR+
Sbjct: 124 TGHYAR---IVRDDCGRYQLW-RAVDTEKDQSYMLHMLGQADLARLLFPIGEYTKQQVRE 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIIN 261
           +A    L  A++ +SQDICFV  G Y +++ RI A  +L  G IV L G+ +GRH G+  
Sbjct: 180 MAAARCLPSANREESQDICFVPDGDYRNLL-RIEAPESLIPGPIVDLEGREIGRHRGLPL 238

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG+  GEP +VV +D   + +IVGP E+L   R  + +  W+ D        
Sbjct: 239 YTVGQRRGLGLGGGEPRYVVAIDPARNALIVGPVEALNRERFIVTDARWVDDA----PPA 294

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           + F C V++R+  +P+P  V    DG + V+ E+ +  V+ GQA VFY    +  RVLGG
Sbjct: 295 ETFHCQVQVRAHAEPLPARVSAQPDGRWLVELERPQRAVSPGQAAVFY----DGVRVLGG 350

Query: 381 GIIS 384
           G I+
Sbjct: 351 GWIA 354


>gi|153005212|ref|YP_001379537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. Fw109-5]
 gi|205811178|sp|A7HCV7|MNMA_ANADF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152028785|gb|ABS26553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 349

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 205/363 (56%), Gaps = 15/363 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV+VA+SGGVDSS  AALL  +G+DVIGV++++ +   A +R  SCCA  D+ DAR   
Sbjct: 1   MRVLVALSGGVDSSTAAALLVAEGHDVIGVSMRVADYSDA-RRGRSCCAPDDLEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV + E RFR  VI PF   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLDIPFYVANVEARFRERVIEPFVRDYVEGRTPNPCVACNSDVKFDWLLARARALGAK- 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R     G     R  +CR  D  +DQ+YFL+   Q+ L D+ FP+GD+ K  V
Sbjct: 119 LATGHYARVERRGG-----RFALCRAGDPAKDQTYFLYGLGQEALRDVLFPVGDLAKRDV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A+K++SQ+ICFV QG   D V     G    G+IV   G++LGRH+G+ 
Sbjct: 174 RAVAAQAGLPNAEKAESQEICFVTQGDAGDFVALRAPGSVRAGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV L+  ++RV+VG        R  + E+ W+        V
Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLEPGTARVVVGSAGEASRDRFAVTEVRWIAGAPPPRPV 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                  VK+R   +     V  +  G  V   +   GVA GQA VFY  D     VLGG
Sbjct: 294 A----ARVKVRHRHEGEEGTVTPDGGGGQVRLARPVRGVAPGQAAVFYDGDE----VLGG 345

Query: 381 GII 383
           G I
Sbjct: 346 GRI 348


>gi|220931733|ref|YP_002508641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothermothrix orenii H 168]
 gi|259495830|sp|B8CWH7|MNMA_HALOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219993043|gb|ACL69646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothermothrix orenii H 168]
          Length = 358

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 209/364 (57%), Gaps = 14/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           RV+VAMSGGVDSSV AALLK  GY+VIG T++++ +  +    +G CC+   + DARRV 
Sbjct: 3   RVLVAMSGGVDSSVTAALLKEQGYEVIGGTMEIFPDYEQPPLDEGGCCSLSSIEDARRVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I + HY F+ ++ F   VI  F + Y    TP PCV CN  +KF  LL    +L AD 
Sbjct: 63  HHIGIRHYTFNLKKVFEEEVINNFVNEYKNARTPNPCVVCNNEIKFRSLLKKALELDADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      V  +   + ++ +  D+++DQ+Y L+  TQ QL     PLG+  K+ V
Sbjct: 123 IATGHY----AIVEHNVNGKHLLKKAKDVDKDQTYMLYGLTQFQLSHTLMPLGNYTKQEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A++ G  I +K +SQ+ICFV    Y   +     G+   G ++  +G ILG+H G+ 
Sbjct: 179 RQMAKDFGFRIHNKPESQEICFVPDNNYTRFLDENYPGLGKPGPVMDTDGNILGKHKGLH 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGLG+++G P++VV LD+  + VI+GP E +    +   ++NW+      D +
Sbjct: 239 HYTIGQRRGLGISLGYPVYVVKLDREKNAVIIGPEEEVYSKSLIANKVNWISI----DKL 294

Query: 321 VDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  K   +IR +S +        ND+ V V F+K +  V  GQ+ VFY        V+G
Sbjct: 295 TEPIKVTARIRYNSPESHAKIYPVNDNEVKVVFDKKQRAVTPGQSVVFYDGKV----VVG 350

Query: 380 GGII 383
           GGII
Sbjct: 351 GGII 354


>gi|309790491|ref|ZP_07685051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oscillochloris trichoides DG6]
 gi|308227478|gb|EFO81146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oscillochloris trichoides DG6]
          Length = 359

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 209/363 (57%), Gaps = 13/363 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VAMSGGVDSS+ AALL   G+ V+GVT+ L++       +  CC+ +    ARRVC+ 
Sbjct: 4   IMVAMSGGVDSSLTAALLHEQGHTVVGVTMHLWDGDDDHLAESLCCSLEMTASARRVCNQ 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + +YVF+Y+  FR AV+  F  +Y+ G TP PC+ CNR +KF  LL+   QLG D +A
Sbjct: 64  LGIPYYVFNYQREFRRAVVDAFVHAYSHGYTPNPCIACNREIKFRALLARANQLGYDYVA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R R+    D  + +++ R  D  +DQSY L+   Q +L  L FPLG+ +K  VR 
Sbjct: 124 TGHYVRRRV---TDANQYKLL-RAHDHGKDQSYVLYMLGQTELARLLFPLGEYQKSEVRA 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL+ AD+ +SQDICFV  G Y  +++       + G IV  +G+ +G+H G+  Y
Sbjct: 180 MATARGLESADRPESQDICFVPDGDYRQLLRTEAPASLVPGPIVDQHGREVGQHQGLPLY 239

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLGV    PL+V  LD   + +IVGP  +L  H  ++   + +     E     
Sbjct: 240 TIGQRRGLGVYAATPLYVTGLDTARNTLIVGPAAALLRHEFWVEAASSVAATWPESP--- 296

Query: 323 GFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            F C V++R+     P  V  +  + +++  +     ++ GQA V Y  +    RV+GGG
Sbjct: 297 -FTCEVQVRAHGATAPATVTAHPGERLHIQLQSPIRAISPGQAAVLYAGE----RVIGGG 351

Query: 382 IIS 384
            I+
Sbjct: 352 TIA 354


>gi|159028008|emb|CAO87968.1| trmU [Microcystis aeruginosa PCC 7806]
          Length = 352

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/367 (42%), Positives = 217/367 (59%), Gaps = 21/367 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F+  +I    S Y AG TPLPC  CN+ VKFS +L   R+ L  D 
Sbjct: 56  QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLETDT 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     +  R ++M R +D  +DQSYFL+  TQ  L    FPLG+  K   
Sbjct: 116 IATGHYARIRF--SPENNRYQLM-RAVDKNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGI 259
           R +A+E GL  ADK DSQD+C ++   +  +   ++  IA+ EGDIV L+G++LG+H+GI
Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIE--AHGTMRSFLDKYIAVSEGDIVDLDGKVLGKHSGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+G+G+A  EPL+VV LD   +RVIVG RES       +  +NW+   + +  
Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSADCLVGRMNWV--SIAQPT 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +  V+ RS   PV V    N+  V + F++ +  +  GQA V Y  +     VLG
Sbjct: 289 TPIRAQVQVRYRSPAVPVNVIPLENNQ-VKLVFDEPQFSITPGQAAVIYEGEI----VLG 343

Query: 380 GGIISGS 386
           GGIISG+
Sbjct: 344 GGIISGA 350


>gi|219669597|ref|YP_002460032.1| tRNA-specific 2-thiouridylase MnmA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539857|gb|ACL21596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfitobacterium hafniense DCB-2]
          Length = 370

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 206/369 (55%), Gaps = 15/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ   S       G CC+   + DARRV  
Sbjct: 8   KVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPS-GGPDDVGGCCSITAIDDARRVAH 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV ++   F   VI  F ++Y +GETP PC  CNR V++ + L   R LGAD L
Sbjct: 67  QLGIPHYVLNFRTIFEENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGADYL 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    + D    R +M RP+D  +DQ+Y L+  TQ QL    FPL D KKE +R
Sbjct: 127 ATGHYAK---ILQDPDSGRYLMSRPVDTWKDQTYMLYNLTQDQLKHTLFPLADYKKEHIR 183

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E GL  ++ K DSQ+ICF+    Y   ++  +      G+ V   G ILGRH G+I
Sbjct: 184 EMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPDKIKPGNFVDRQGNILGRHQGLI 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT+GQR+GLGV  G+P+FV+  +   + VI+G  + +  H +   ++NW+     E  +
Sbjct: 244 NYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAITGLEGPL 303

Query: 321 VDGFKCFVKIRSSQDP-VPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTSDSNE 374
               K   K   ++   +P+       G     V V+F   +  +  GQA VFY  D   
Sbjct: 304 TVQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVFYQGD--- 360

Query: 375 ARVLGGGII 383
             V+GGG I
Sbjct: 361 -LVVGGGKI 368


>gi|291550046|emb|CBL26308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus torques L2-14]
          Length = 358

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 215/367 (58%), Gaps = 19/367 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++     +  +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENEVQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +I + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  ASSIGIPYYVMNFKQEFQKNVIDYFTKEYLNGRTPNPCIACNRYVKWEALLQRSLSIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + R   L +DQ+Y L+  TQ+QL     P+G+  K+
Sbjct: 125 YIATGHYARIDKLSNG-----RYAIRRSATLAKDQTYALYNLTQEQLEHTLMPVGNYSKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R++A ++GL +A+K DSQDICFV  G Y   ++  NA   + +G+ V  +G+ILG+H 
Sbjct: 180 QIREMAEKIGLQVANKPDSQDICFVPDGDYASFIEE-NADTPIRQGNFVTPDGKILGKHK 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YT+GQR+GLG+A+G P FV+ +   +  V++G  E    H +   E+N++     E
Sbjct: 239 GIIHYTVGQRKGLGLALGYPAFVLEIRPETDEVVIGTYEESLTHTLRANELNFMS---VE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D + +  + F KIR +       V++  +D +   F++    V  GQA V Y  +     
Sbjct: 296 D-LTEPMRVFAKIRYNHKGAWCTVEKTGEDEITCTFDEPIRAVTPGQAVVLYDGE----Y 350

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 351 VLGGGTI 357


>gi|331091036|ref|ZP_08339878.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405258|gb|EGG84794.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 360

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 211/367 (57%), Gaps = 15/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    R   +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAHLLKEQGYDVIGVTMQIWQDEDRAIQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  AGQLEIPYYVMNFKKEFKKEVIDYFIEEYRQGRTPNPCIACNRYVKWESLLKRSMDIGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+   ++G  R  + R   L +DQ+Y L+  TQ QL     P+G+  K+ 
Sbjct: 125 YIATGHY--ARIVKLENG--RYTLKRSATLAKDQTYALYNLTQNQLSHTLMPVGEYTKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A ++ L +A+K DSQDICFV  G Y   ++         G+ V LNG ILG+H GI
Sbjct: 181 IRQIAEKIHLQVANKPDSQDICFVPDGDYASFIEETTGERIQTGNFVDLNGNILGQHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQR+GLG+++G P FV+ +   ++ V++G  E    + +    +N++     E  
Sbjct: 241 IHYTVGQRKGLGLSLGRPAFVLEIRPETNEVVIGTNEDAMSYTLRANHLNFMSISDLEGE 300

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +      F KIR +       +++ ++D V   F++ +  +  GQA VFY    ++  V+
Sbjct: 301 M----HVFAKIRYNHKGAWCTIKKTSEDEVLCTFDEPQRAITPGQAVVFY----DDEYVI 352

Query: 379 GGGIISG 385
           GGG I G
Sbjct: 353 GGGTIIG 359


>gi|114776442|ref|ZP_01451487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
 gi|114553272|gb|EAU55670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
          Length = 374

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 203/368 (55%), Gaps = 18/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDAR 77
           K +RV+ AMSGGVDSSV+A LLK  G DVIGV L +++ SR    R GSCC+ +D YDAR
Sbjct: 20  KGVRVIAAMSGGVDSSVMAVLLKEAGVDVIGVFLNVWDYSRDEVNRHGSCCSLEDSYDAR 79

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D I +  Y  D  + FR  VI PF   Y  G TP PC  CNR VKF  LL    +L 
Sbjct: 80  RVADHIGIPFYAMDMRDEFRRDVIDPFIQDYETGRTPNPCERCNRFVKFGALLEAADKLE 139

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R R    DD     +  +  D  +DQSYFL  T + Q   + FP+G ++K
Sbjct: 140 AAYVATGHYVRRR----DDNDGIHLF-KGNDARKDQSYFLATTNRAQAERILFPVGGLEK 194

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
           +  R LA    L  ADK +SQDICF+  G     +KR  A     EGDIV   G+ILGRH
Sbjct: 195 DDTRRLAHFYKLPTADKHESQDICFIPAGDRIAFLKREGAEAGFREGDIVDTTGRILGRH 254

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQR+GLG+  G P  VV LD  ++RV V   E   +  + + E  W+ +   
Sbjct: 255 QGIAHYTLGQRKGLGLPDG-PWHVVALDGATARVTVAHPEDAMIGGVDVSEAVWIREPKS 313

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +AV        K+R    P    ++  D+ + V F + +   A GQ   FY  D     
Sbjct: 314 GEAVT------AKVRYQMQPAACVLEHFDESLRVTFAQPQKPSAPGQVAAFYAGDE---- 363

Query: 377 VLGGGIIS 384
           +LGGGI+S
Sbjct: 364 LLGGGIVS 371


>gi|110802009|ref|YP_699068.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens SM101]
 gi|123047295|sp|Q0SS39|MNMA_CLOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110682510|gb|ABG85880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens SM101]
          Length = 359

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 211/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD 
Sbjct: 65  QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +
Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+
Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRTGNFVDKYGNVLGKHKGIV 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++     ED +
Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEDPM 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+G
Sbjct: 300 ----EVEAKIRYSAKPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351

Query: 380 GGIIS 384
           GGII 
Sbjct: 352 GGIIE 356


>gi|147677391|ref|YP_001211606.1| tRNA-specific 2-thiouridylase MnmA [Pelotomaculum thermopropionicum
           SI]
 gi|205816885|sp|A5D3F0|MNMA_PELTS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146273488|dbj|BAF59237.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Pelotomaculum thermopropionicum SI]
          Length = 365

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 220/371 (59%), Gaps = 15/371 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76
           +  +VVVAMSGGVDSSV AALL   G++VIG+T+Q++N  + ++ KG  +CC+   + DA
Sbjct: 2   EKTKVVVAMSGGVDSSVTAALLLEQGFEVIGITMQIWNPGEEAESKGERTCCSLTAIDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV D + +SHYV ++   F   VI  F S Y  G TP PC+ CNR VKF  LL     +
Sbjct: 62  RRVADKLGISHYVLNFRSIFEEKVIDYFTSEYLRGRTPNPCIACNRYVKFEALLDRALSI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+ +ATGHY R   Y G+ G  R  + RP+D  +DQ+Y L+  TQ+Q+     PLG+  
Sbjct: 122 GAEYIATGHYARLG-YSGEYG--RYTVRRPVDRRKDQTYVLYGMTQRQIARTMMPLGNYT 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL +A K++SQ+ICF+    Y   ++   AGI   G  +++ G+++GRH
Sbjct: 179 KGQVRKIAEDFGLPVAGKAESQEICFILDDDYRRFLREKAAGIK-PGPFLNMKGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           NGI  YT+GQRRGLG+A GE L+VV +D  ++ + +GP E++    +   ++N +   L+
Sbjct: 238 NGIPFYTVGQRRGLGLAAGERLYVVKIDPENNAITLGPEEAVWGRSLIAADVNLI---LY 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E ++ +  +   ++R +    P  +    +G V V F   +  +  GQA VFY  D    
Sbjct: 295 E-SLEEPLEVEAQVRYNARTSPATLVPLPEGRVGVHFHTPQRSITPGQAVVFYRGDY--- 350

Query: 376 RVLGGGIISGS 386
            ++GG  I  +
Sbjct: 351 -LIGGATIEST 360


>gi|291522307|emb|CBK80600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprococcus catus GD/7]
          Length = 368

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 201/365 (55%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++   +       G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQEEEDEIVEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I + +YV ++ E FR  VI  F S Y  G TP PC+ CNR VK+  LL     LGAD
Sbjct: 65  AERIGIPYYVMNFREVFREKVIDNFVSEYEKGRTPNPCIVCNRYVKWEALLEKALALGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    V     R  I     D  +DQ+Y L+   Q QL     P+G   K  
Sbjct: 125 YIATGHYAR---IVHLPNGRYAIEKAAFD-RKDQTYALYNLNQHQLAHTLMPVGAYDKSE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL +A+K DSQDICFV  G Y   ++        EGD V  NG++LG H GI
Sbjct: 181 VRRIAGEIGLSVANKMDSQDICFVSDGNYQAFIEDYTGKKLPEGDFVDKNGKVLGHHRGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GL +AMG P+FV  ++   +++I+G  + L    +Y   +N +     ++ 
Sbjct: 241 GAYTIGQRKGLNLAMGHPVFVTGINPEENKIIIGENDELFQRALYASNVNLMSRASLDEP 300

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           V    +   KIR +    P   ++  DG +YV F++ +  +  GQA V Y  D     V 
Sbjct: 301 V----RLTAKIRYAHKAAPCIARQLPDGSLYVCFDEPQRAITPGQAVVLYDGD----LVA 352

Query: 379 GGGII 383
           GGGII
Sbjct: 353 GGGII 357


>gi|313905756|ref|ZP_07839115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cellulosolvens 6]
 gi|313469362|gb|EFR64705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cellulosolvens 6]
          Length = 363

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 208/368 (56%), Gaps = 13/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDA 76
           KD  VVV MSGGVDSSV A LLK  GY+VIGVT+Q++      +   +G CC    V DA
Sbjct: 4   KDKTVVVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDESECRLENEGGCCGVTAVEDA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   + + +YV +++E F+  VI  F   Y  G TP PC+ CNR VK+  LL+ +  +
Sbjct: 64  RRVAGVLGIPYYVMNFKEEFQKNVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTKSLAI 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R    D+G  R  +   +  ++DQ+Y L+  TQ QL     P+GD +
Sbjct: 124 GADYIATGHYARIRHL--DNG--RYAIANSVTAKKDQTYALYGLTQNQLAHTLMPVGDYE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL +A KSDSQ+ICFV  G Y   ++R +  +  EG+ V  +G++LGRH
Sbjct: 180 KPKVREIAERAGLPVAHKSDSQEICFVPDGDYASFIERDSGIVMPEGNFVTKDGEVLGRH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQRRGL + MG  +FV  +   ++ V+VG  E +    +    +N++G G  
Sbjct: 240 RGITHYTVGQRRGLDLPMGRRVFVTEIRPETNEVVVGEAEDVWSETLKANRLNFMGIGDL 299

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                D F    KIR +       V+R  +D +   F+     V  GQA VFY  D    
Sbjct: 300 PLGEEDHF--LAKIRYNHAGTGCRVKRTGEDEITCVFDDPVRAVTPGQALVFYKDDY--- 354

Query: 376 RVLGGGII 383
            V GGG+I
Sbjct: 355 -VAGGGVI 361


>gi|154503928|ref|ZP_02040988.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149]
 gi|153795527|gb|EDN77947.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149]
          Length = 356

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 216/367 (58%), Gaps = 17/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    + A +  G CC    V DARRV
Sbjct: 3   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEEQAAQEENGGCCGLSAVDDARRV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GA+
Sbjct: 63  AAALEIPYYVMNFKKEFKENVIDYFVEEYQNGRTPNPCIACNRYVKWESLLQRSLSIGAE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+   ++G  R  + R   L +DQ+Y L+  TQ+QL     P+G   K+ 
Sbjct: 123 YIATGHY--ARVVQLENG--RYTLRRSATLAKDQTYALYNLTQEQLKRTLMPVGKYTKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           VR +A ++ L IA+K DSQDICFV  G Y   ++   AG+ + EG+ V  +G +LGRH G
Sbjct: 179 VRAIAEKINLRIANKPDSQDICFVPDGDYAAYIEE-EAGVKVPEGNFVLTDGTVLGRHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YT+GQR+GLG+A+G P FV+ +   ++ V++G +E     ++  R +N++     ED
Sbjct: 238 ITHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTKEESMTTQLRARNLNFMA---VED 294

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +    F KIR +       +++  +D V   F++ +  V  GQA VFY  +     V
Sbjct: 295 -LTEPLHVFTKIRYNHKGAWCTIEKTGEDEVLCTFDEPQRAVTPGQAVVFYDGEY----V 349

Query: 378 LGGGIIS 384
           LGGG I 
Sbjct: 350 LGGGTIQ 356


>gi|167759055|ref|ZP_02431182.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704]
 gi|167663462|gb|EDS07592.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704]
          Length = 361

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 217/370 (58%), Gaps = 17/370 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    R   + +G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEERIVEEEQGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 65  AASLGIPYYVMNFKQEFKTYVIDYFMDEYLHGRTPNPCIACNRYVKWESLLKRSMEIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  RL     G  R  +       +DQ+Y L++ TQ+QL     P+G+  K+
Sbjct: 125 YIATGHYARIERL-----GNGRCSLRTSAASAKDQTYALYSLTQEQLKRTLMPVGEYTKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R LA ++GL++ADK DSQDICFV  G Y   ++  +    L G+ V  +G ++GRH G
Sbjct: 180 EIRKLAGKIGLNVADKPDSQDICFVPDGDYASYIEANSGARILPGNFVLSDGTVVGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I++YT+GQR+GLG+++G P+FV+ +   ++ +IVG  E      +    IN++     ED
Sbjct: 240 IVHYTVGQRKGLGLSLGHPVFVLDIRPETNEIIVGTNEESLTCHVRADRINFMA---IED 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + D  + + KIR +       V++  +D +   FE+ +  VA GQA V Y  +     V
Sbjct: 297 -LADKKRVWAKIRYNHRGAWCTVEKTGEDEILCIFEEPQRAVAPGQAVVLYDGEY----V 351

Query: 378 LGGGIISGSK 387
           LGGG I G +
Sbjct: 352 LGGGTIIGDE 361


>gi|226322606|ref|ZP_03798124.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758]
 gi|225208943|gb|EEG91297.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758]
          Length = 359

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 19/369 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++     K  +  G CC    V DAR+V
Sbjct: 5   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEESKIQEENGGCCGLSAVDDARKV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL+ + ++GAD
Sbjct: 65  AAQIGIPYYVMNFKKDFQEKVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTRSMEIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  +       +DQ+Y L+  TQ QL     P+G+ +K+
Sbjct: 125 YIATGHYARVEQLPNG-----RYAIRHSATWSKDQTYALYNLTQDQLRRTLMPVGEYEKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL IA+K DSQDICFV    Y   ++  +     EG+ V  +G+ILGRH G
Sbjct: 180 QIREIAKEIGLQIANKPDSQDICFVSDDDYASFIEEESDQKIPEGNFVTPDGKILGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YTIGQR+GLG+++G P FV+ +  +++ V++G  E L   R+   ++N++     ED
Sbjct: 240 IIHYTIGQRKGLGLSLGYPAFVLEIRPDTNEVVIGTNEDLMTTRVRANKLNFM---TVED 296

Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             ++G  + F KIR +       V++  +D +   FE  +  V  GQA V Y  D     
Sbjct: 297 --LEGEMRVFAKIRYNHKGDWCTVRKTGEDEIECIFETPQRAVTPGQALVLYDGDY---- 350

Query: 377 VLGGGIISG 385
           VLGGG I G
Sbjct: 351 VLGGGTILG 359


>gi|269217070|ref|ZP_06160924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia exigua ATCC 700122]
 gi|269129207|gb|EEZ60292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia exigua ATCC 700122]
          Length = 362

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 149/373 (39%), Positives = 210/373 (56%), Gaps = 23/373 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-------RKASKRKGSCCAGQDVY 74
           RV+V MSGGVDSSV A +LK+ GY+VIG T++L+ S       R  + R  +CC+  DV 
Sbjct: 4   RVMVGMSGGVDSSVTAYVLKQQGYEVIGATMRLHGSDLPGRDARSCASR--TCCSLDDVE 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V   + ++H   D+ +RF +AVI PF  +Y    TP PC+DCNR +KF  +L    
Sbjct: 62  DAKSVARRLGIAHRTIDFTDRFEDAVIKPFVRAYETARTPNPCIDCNRRLKFGSMLERAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LG D +ATGHY +  +  GD    R  + R  D  +DQSY L++ TQ QL     PLG 
Sbjct: 122 DLGCDYVATGHYAQI-VRRGD----RFALVRGADASKDQSYVLYSLTQYQLAHTLLPLGG 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           M+K  VR +A E G   ADK +SQDICF+  G Y   ++R +      G+I    G ++G
Sbjct: 177 MRKSEVRAIAAEQGFINADKPESQDICFIPDGDYVGFLERYSGHTPQPGEIRDEAGAVIG 236

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH+GI ++T+GQR+G+G+A   PL+VV  D     ++VGP++SL        + NW+ D 
Sbjct: 237 RHSGIESFTVGQRKGIGIAASGPLYVVAKDARDHALVVGPKDSLLSDGCVADDWNWVADP 296

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ED  +  F+  VK    Q P P  V+R  DG V + +       A GQA V Y  D  
Sbjct: 297 --ED--LASFEVMVKTHYRQTPHPARVERRQDGTVRIVYASPARLAAPGQAVVVYQGDE- 351

Query: 374 EARVLGGGIISGS 386
              V+GGG ++ +
Sbjct: 352 ---VIGGGTVAST 361


>gi|225026476|ref|ZP_03715668.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353]
 gi|224956215|gb|EEG37424.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353]
          Length = 354

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 207/364 (56%), Gaps = 17/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L+K  GYD IGVT++LY N      R+ +CC+  D+ DAR VC
Sbjct: 4   KALIAMSGGVDSSVAAYLMKEAGYDCIGVTMKLYDNEDIGMAREKTCCSLSDIEDARSVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YVF++++ F+  VI  F S Y  G TP PC++CNR +KF  L    + L  DV
Sbjct: 64  VKLGIPYYVFNFKDDFKEKVIDNFISCYQNGMTPNPCIECNRHLKFEHLYKRAKVLHCDV 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY +    +  D +   ++ + +D  +DQSY L++ TQ+QL +  FPLGD  K  +
Sbjct: 124 IVTGHYAK----ITHDEQGYHLL-KGVDDSKDQSYVLYSLTQEQLANTCFPLGDYSKTEI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E G   A K DSQDICF+  G Y   +++     +  GD V+  G+++GRH G  
Sbjct: 179 RKIAEEQGFFNAHKHDSQDICFIPDGDYMSFIEKTTGKKSEPGDFVNQEGEVVGRHKGYY 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG++  +P +V  +    ++VIVG  E L    +   + NW+ + L ED V
Sbjct: 239 GYTIGQRKGLGISAPKPYYVTEIRPEENKVIVGSNEDLFKTDLIANDFNWI-ENLAEDEV 297

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                   +IR  Q       ++N DG V + F + +  +  GQA V Y  +     V+G
Sbjct: 298 AKA-----RIRYHQTEKEATARKNSDGTVDIHFLEPQRAITKGQAVVLYRDN----HVVG 348

Query: 380 GGII 383
           GG I
Sbjct: 349 GGTI 352


>gi|227872028|ref|ZP_03990409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sinus F0268]
 gi|227842120|gb|EEJ52369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sinus F0268]
          Length = 362

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 212/371 (57%), Gaps = 16/371 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV AAL++  GYD IG+T++LY+S      R  +CC  +DV DAR+V 
Sbjct: 3   KALIAMSGGVDSSVAAALMQEKGYDCIGITMKLYDSETGQACRSRTCCTLEDVEDARQVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T+++  YV ++++ F+  VI+PF  +Y  G TP PC+ CNR +K   L     +L    
Sbjct: 63  STLSMPFYVLNFKDDFQKKVILPFVETYENGGTPNPCIRCNRFMKHDKLYQRAEELSCSY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           + TGHY R      D+   R ++ +  D ++DQSY L+  +Q+QL    FPLG+   KE 
Sbjct: 123 IVTGHYARIE---KDESSGRYLLKKAKDEKKDQSYVLYFLSQEQLAHTLFPLGEYSSKEE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + G   +DK DSQDICFV  G Y D +++        GD V  NG+ LG H G 
Sbjct: 180 VREIADKYGFINSDKPDSQDICFVTNGDYGDFLEKFRGKPYPSGDFVDENGKKLGEHRGT 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+++ +P++V   +   ++VI+  +E +    +   + NW+     ED 
Sbjct: 240 VRYTIGQRKGLGLSLKKPMYVSGKNIEKNQVILSDKEGIYFEGLLANDFNWISLPPTEDM 299

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      K R +   VP  V   ++G V++ F + E  V  GQA V Y  D     VL
Sbjct: 300 AVE-----AKTRYNGKAVPAIVSVRENGDVFLRFPEKERAVTKGQAVVLYDGD----LVL 350

Query: 379 GGG-IISGSKR 388
           GGG I+ G K+
Sbjct: 351 GGGTIVEGYKK 361


>gi|83590486|ref|YP_430495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moorella thermoacetica ATCC 39073]
 gi|123524262|sp|Q2RHY7|MNMA_MOOTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83573400|gb|ABC19952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moorella thermoacetica ATCC 39073]
          Length = 357

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/363 (41%), Positives = 210/363 (57%), Gaps = 13/363 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VAMSGGVDSS  AALLK  GY+VIGVTL L+         +  CC+ + V DARRV + 
Sbjct: 1   MVAMSGGVDSSTAAALLKEAGYEVIGVTLALWPEDTPPPPGETGCCSLKAVDDARRVANI 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++ +YV ++ + F   VI  F +SY  GETP PC+ CNR +KF  LL+  R LG D +A
Sbjct: 61  LDIPYYVLNFRDLFEREVIDYFIASYLEGETPNPCIACNRRIKFGALLAKARALGIDYIA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R Y  D  K R ++ R  D  +DQSY L+  TQ+QL     PLGD  K  VR+
Sbjct: 121 TGHYAR-RWY--DKEKGRYLLARGRDAGKDQSYALYTFTQEQLAHTLLPLGDYTKVEVRE 177

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL +A K++SQ+ICFV +G Y D ++         G I+   G++LG+H G+  Y
Sbjct: 178 IAARYGLPVARKAESQEICFVTEGDYRDYIQSRAREKIKPGPILDTRGRVLGQHRGLPFY 237

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P FVV LD   + VIVG +E LE   +Y R+ N++  G        
Sbjct: 238 TIGQRKGLGLALGKPCFVVALDPERNAVIVGDKEDLERRVLYARDNNYILWGELPGKA-- 295

Query: 323 GFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   +IR  + +    +         ++F++ +  +  GQA V+Y  D     V+GGG
Sbjct: 296 --RVTARIRYRAPEAAATWHPLAGGRARLEFDEPQRAITPGQAVVYYQGDL----VVGGG 349

Query: 382 IIS 384
            I 
Sbjct: 350 TIE 352


>gi|160931216|ref|ZP_02078618.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
 gi|156869771|gb|EDO63143.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
          Length = 357

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 201/364 (55%), Gaps = 15/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ MSGGVDSSV A LL + GYDV GVT++L  +   A  + G CC+  D+ DARRV 
Sbjct: 4   KVMLGMSGGVDSSVAALLLLQQGYDVTGVTMKLRPDQYMAESQSGGCCSLDDIDDARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H V ++ + F   VI  FAS Y AG TP PC+ CN  VKF  LL     L  D 
Sbjct: 64  YRLGIEHLVLNFTQVFSEKVIDYFASEYLAGRTPNPCIACNAHVKFDALLRKALSLEYDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  + +   D+G   R + +     +DQSY L+  TQ QL     PL  M+K   
Sbjct: 124 VATGHY--AVITQNDEG---RWLLKKAPCSKDQSYVLYHLTQHQLAHTLMPLAGMEKSEA 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+LARE GL +A K DSQ+ICFVQ   Y   ++R        G+ +   G +LG H GI 
Sbjct: 179 RELAREAGLPVAHKPDSQEICFVQDNDYASFIRRYTGKEPPPGNFIDQAGNVLGTHKGIT 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GLG++ G+P+FV  +D  S+ V +G   S     +   ++N +     E  +
Sbjct: 239 HYTIGQRKGLGISFGKPMFVTKIDPISNTVTLGENGSQYASSLIAGKVNLISADTLEAPI 298

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                  VK+R    P P  +   D+G + VDF++ +  V  GQA VFY  D     VLG
Sbjct: 299 ----SAQVKVRYQAPPAPARLTPLDNGKIRVDFQEPQRSVTPGQAAVFYDGD----LVLG 350

Query: 380 GGII 383
           GGII
Sbjct: 351 GGII 354


>gi|260438131|ref|ZP_05791947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio crossotus DSM 2876]
 gi|292809456|gb|EFF68661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio crossotus DSM 2876]
          Length = 357

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/366 (40%), Positives = 204/366 (55%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A +LK  GYDVIGVT+Q++           G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAALILKEQGYDVIGVTMQIWQDEDYCDMSENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +TI + +YV +++E F+  VI  F + Y  G TP PC+ CNR VK+  LL     +GAD
Sbjct: 64  AETIGIPYYVMNFKEEFKKTVIDYFVAEYLRGRTPNPCIACNRYVKWEALLHRCLGIGAD 123

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY    +L  G     R  + +   L +DQSY L+  TQ++L    FP+  M+K+
Sbjct: 124 YIATGHYGNIEKLPNG-----RFAVTKSASLNKDQSYVLYNLTQEELSHTLFPISTMEKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A   GL +A K DSQDICF++ G Y   ++      +  GD V   G +LGRH G
Sbjct: 179 EVRKIAERAGLPVAHKKDSQDICFIKDGDYASFIEEQTGVKSGPGDFVDSKGNVLGRHAG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YT+GQR+GLG+A GEP +V+ LD   ++V++G  + L    +   +IN++      +
Sbjct: 239 IIHYTVGQRKGLGIAFGEPRYVIRLDVPKNQVVLGTLDELMTKEVLFDDINYMSVSDINE 298

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377
            V    K   K+R S   VP  +    DGV    FE+       GQA VFY    +   V
Sbjct: 299 PV----KVTGKVRYSAKDVPCTLYPAKDGVMKAVFEEPVRAATPGQAAVFY---KDGCIV 351

Query: 378 LGGGII 383
            GG II
Sbjct: 352 CGGSII 357


>gi|317498544|ref|ZP_07956838.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894237|gb|EFV16425.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 363

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 210/365 (57%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + HYV ++ + F++ VI  F   Y    TP PC+ CNR VK+  LL     +GAD
Sbjct: 64  AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  S++   D+G R  + C     ++DQ+Y L+  TQ QL     P+G   K+ 
Sbjct: 124 YIATGHY--SQITKLDNG-RYALKCSKTQ-KKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL +A+K DSQDICFV    Y + ++        +G+ V   G +LG H GI
Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L  + +Y  ++N +    FE  
Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFE-- 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             DG K   KIR +   VP  V    +D V V F++ +  +  GQA VFY  D     V 
Sbjct: 297 --DGMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350

Query: 379 GGGII 383
           GG  I
Sbjct: 351 GGATI 355


>gi|167765590|ref|ZP_02437654.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1]
 gi|167712775|gb|EDS23354.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1]
          Length = 363

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 210/365 (57%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + HYV ++ + F++ VI  F   Y    TP PC+ CNR VK+  LL     +GAD
Sbjct: 64  AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  S++   D+G R  + C     ++DQ+Y L+  TQ QL     P+G   K+ 
Sbjct: 124 YIATGHY--SQITKLDNG-RYALKCSKTQ-KKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL +A+K DSQDICFV    Y + ++        +G+ V   G +LG H GI
Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L  + +Y  ++N +    FE  
Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFE-- 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             DG K   KIR +   VP  V    +D V V F++ +  +  GQA VFY  D     V 
Sbjct: 297 --DGMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350

Query: 379 GGGII 383
           GG  I
Sbjct: 351 GGATI 355


>gi|27262188|gb|AAN87375.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Heliobacillus mobilis]
          Length = 376

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 205/365 (56%), Gaps = 16/365 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSSV AALL   GY+VIGVTLQ++        +G CC+   V DARRV  T
Sbjct: 5   VVVAMSGGVDSSVTAALLLEKGYNVIGVTLQIWPKDAPEGAEGGCCSLSAVEDARRVAFT 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV ++ + F   VI  F   Y AG+TP PC+ CNR +KF  LL  +  LGAD +A
Sbjct: 65  LGIPHYVMNFRDYFEEEVINYFGQEYLAGQTPNPCIRCNRVIKFEGLLQKSLALGADKVA 124

Query: 143 TGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           TGHY R    +  D +R+R  + +  D ++DQSY LF  TQ+QL    FPLG   K  +R
Sbjct: 125 TGHYAR----IEYDAERQRYRLGQAKDAKKDQSYVLFNMTQEQLSRTMFPLGGFTKPEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGII 260
           ++AR   L +A K DSQ+ICF+    Y   ++ R        G  V  +G ++G H G+ 
Sbjct: 181 EMARAYNLAVASKPDSQEICFIPDNDYRRFLQERYPENSFAPGPFVDTSGNVIGTHQGLP 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG A G P +VV LD   + VI+G  E +   R+   ++NW+      + +
Sbjct: 241 FYTVGQRKGLGQAFGYPAYVVGLDVARNAVIIGRDEDVFSRRLLAGDLNWIE----VNRL 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               +   KIR S       ++   +G  V V+FE+ +  +  GQA VFY  D     ++
Sbjct: 297 TAPMEVQAKIRYSALKAKAIIRPVGEGDQVIVEFEEKQRAITPGQAVVFYQGDW----IV 352

Query: 379 GGGII 383
           GGG I
Sbjct: 353 GGGTI 357


>gi|331085021|ref|ZP_08334108.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408721|gb|EGG88186.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 357

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 212/365 (58%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    R   +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    V  +  R  + C    L +DQ+Y L+  TQ+QL     P+G+  K+ 
Sbjct: 124 YIATGHYARV---VQLENGRYTLKCSAT-LAKDQTYALYNLTQEQLKRTLMPVGEYTKDQ 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++ L IA+K DSQDICFV  G Y   ++   A    EG+ V L+G++LGRH GI
Sbjct: 180 VREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHKGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+++G P FV+ +   ++ +++G  E    + +   ++N++     ED 
Sbjct: 240 THYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSMSYTLRANQLNFMS---IED- 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    + + KIR +       ++++  D V   FE+ +  +  GQA VFY  +     V+
Sbjct: 296 LTGEMRVWTKIRYNHKGAWCTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGEY----VV 351

Query: 379 GGGII 383
           GGG I
Sbjct: 352 GGGTI 356


>gi|238922133|ref|YP_002935647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium eligens ATCC 27750]
 gi|238873805|gb|ACR73513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium eligens ATCC 27750]
          Length = 355

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 210/363 (57%), Gaps = 13/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  CC    V DARRV  
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDDATEAAENGCCGISAVDDARRVAG 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +YV +++  F+  VI  F   Y  G TP PC+ CNR VK+  LL  + ++GAD +
Sbjct: 64  QLDIPYYVMNFKNEFKCNVIDYFVDEYKKGRTPNPCIACNRYVKWESLLKRSLEIGADYI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R++   +G  R  +C  +   +DQ+Y L+  TQ+QL     P+GD  K+ VR
Sbjct: 124 ATGHY--ARIHQLPNG--RYTICNSVTARKDQTYALYNLTQEQLSHTLLPIGDYTKDQVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++G+ +A K DS +ICF+    Y   +KR     ++ G+ + +NG ++GRH GII+
Sbjct: 180 EIASKIGITVAKKPDSMEICFIPDNDYAGFIKRETGYTSVPGNFIDVNGNVIGRHQGIIH 239

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQR+GLG+A+G+P FVV +   ++ V++G    +   ++Y   +N++     E  + 
Sbjct: 240 YTVGQRKGLGLALGKPAFVVAIRPETNEVVIGDNSDVFSPKLYANNLNFMSIPSLEGEM- 298

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR S +     ++  D+      F++    V  GQA V Y  D+    VLGG
Sbjct: 299 ---RAKGKIRYSHEGAMCTIRMFDENTLECTFDEPVRAVTPGQALVLYDGDN----VLGG 351

Query: 381 GII 383
           G I
Sbjct: 352 GTI 354


>gi|302670955|ref|YP_003830915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Butyrivibrio proteoclasticus B316]
 gi|302395428|gb|ADL34333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Butyrivibrio proteoclasticus B316]
          Length = 373

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 202/363 (55%), Gaps = 15/363 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCD 81
            ++AMSGGVDSSV AAL  + GY+ IG T++LY N        G+CC+ +D  DAR VCD
Sbjct: 19  ALIAMSGGVDSSVAAALTLKKGYNCIGCTMRLYENDMVGLDLLGTCCSIEDTKDARSVCD 78

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + ++ YE  FR+ VI PF  SY  GETP PC+ CN+ +KF  L    R+LG D +
Sbjct: 79  KLGIDYNIYHYEAEFRDKVIEPFVCSYERGETPNPCIRCNKYLKFDSLYKRARELGCDYI 138

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY R     G        + +  DL +DQSY L+  +++QL    FPLG+  K  VR
Sbjct: 139 VTGHYARIEERDG-----HFYLLKAKDLNKDQSYVLYDLSEEQLRHTLFPLGEFTKPEVR 193

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E G   + KS+SQDICFV  G Y  ++ R       +GD V  +G +LG H+GIIN
Sbjct: 194 AIAEENGFVTSHKSESQDICFVPDGDYAGMIHRYRGKDYPKGDFVDKDGNVLGTHDGIIN 253

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+     L+V  LD  +++VI+     L    + +R+ +W+          
Sbjct: 254 YTIGQRRGLGIPADRRLYVTKLDVENNKVILADNIDLFKREMIIRDFHWITGS----EPT 309

Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           + F+C  KIR      P  V    +    V F++++  + +GQ+ V Y  D     VLGG
Sbjct: 310 NEFRCQAKIRYKHKEQPASVLPLGEKRARVVFDEAQRAITAGQSAVLYDGDI----VLGG 365

Query: 381 GII 383
           GII
Sbjct: 366 GII 368


>gi|291556233|emb|CBL33350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum V10Sc8a]
          Length = 358

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 212/370 (57%), Gaps = 23/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +AMSGGVDSSV   LLK D YDV G TL+L++SR  +   G C +  D+ DA+ +  
Sbjct: 3   KLAIAMSGGVDSSVALVLLK-DKYDVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V HY+ D  E F   V   F  SY +G TP PCV+CN T+KF  LL   ++ G + +
Sbjct: 61  KFGVPHYLLDMRELFSKTVQKSFTESYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLE-----RDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY+RS     D+   R ++ + ++ +     +DQSY L+  +QQQL    FPLG+M 
Sbjct: 121 ATGHYVRSCY---DEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A + GL  +DK DSQDICFV  G Y   ++R       +GD +  NG ++GRH
Sbjct: 178 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+I YTIGQRRG+G   G+P++V+  + +++ V +G  E L    +Y   +NW+    F
Sbjct: 238 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIA---F 294

Query: 317 EDAVVDGFKCFVKI--RSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           E    + FKC  K   R ++ P  V+ Q RN   V V F++    V  GQ  VFY  D  
Sbjct: 295 EYPESE-FKCKAKTRYRQTEQPCTVYPQGRNT--VRVVFDEKIRAVTPGQHVVFYDGDI- 350

Query: 374 EARVLGGGII 383
              VLGGG+I
Sbjct: 351 ---VLGGGVI 357


>gi|326390151|ref|ZP_08211712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993799|gb|EGD52230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 364

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 215/370 (58%), Gaps = 14/370 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           RV + MSGGVDSSV A LLK++G+DVIG+T++++  +  KA     SCC+ +   DA++V
Sbjct: 6   RVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHEAKAFDSDKSCCSLRATQDAKKV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + V HY  D+ E F + ++  F + Y  G TP PCV CNR +KF +LL    +LGA 
Sbjct: 66  AEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KKE 
Sbjct: 126 YIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R LA E+ L +A K +SQ+ICF+    Y   +KR        G+   ++G+ LG H GI
Sbjct: 183 IRALAEELKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHKGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++      + 
Sbjct: 243 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI----EK 298

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR ++++   +     +D V V F K +  +  GQ+ VFY  D     V+
Sbjct: 299 LKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 354

Query: 379 GGGIISGSKR 388
           GGGII    R
Sbjct: 355 GGGIIEKKVR 364


>gi|168218238|ref|ZP_02643863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens NCTC 8239]
 gi|182379744|gb|EDT77223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens NCTC 8239]
          Length = 359

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD 
Sbjct: 65  QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +
Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+
Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++     E  +
Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+G
Sbjct: 300 ----EVEAKIRYSARPAKATISPMENGKVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351

Query: 380 GGIIS 384
           GGII 
Sbjct: 352 GGIIE 356


>gi|187933232|ref|YP_001885369.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B str.
           Eklund 17B]
 gi|205813703|sp|B2THM7|MNMA_CLOBB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187721385|gb|ACD22606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 361

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 217/367 (59%), Gaps = 17/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIG T+Q++   ++  +R+G CC+   V DARRVC
Sbjct: 7   KVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARRVC 66

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +++  YV ++ + F+  VI PF   Y  G TP PC++CN+ +KF +LL   + +G D 
Sbjct: 67  DKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGVDY 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +++   DD   R ++ R  D  +DQ+Y L+  TQ QL     P G+  K+ +
Sbjct: 127 IATGHY--AKIDKKDD---RYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKDRI 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +     G    G+ V  +G ILG+H GI+
Sbjct: 182 REIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNILGKHKGIV 241

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+++G P+FV  ++  ++ V++G  E +    +   ++N++  D L ++ 
Sbjct: 242 YYTIGQRKGLGLSVGRPVFVTDINPKTNEVVIGAEEDIFKTELIAGDLNFITFDKLEKEI 301

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR S  P    +    DG V V F + +  +  GQ+ VFY    N   V+
Sbjct: 302 EVEA-----KIRYSARPGKATIVPLKDGRVKVVFNEKQRAITKGQSVVFY----NGNIVI 352

Query: 379 GGGIISG 385
           GGG+I  
Sbjct: 353 GGGVIEA 359


>gi|325661222|ref|ZP_08149849.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472729|gb|EGC75940.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 357

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 212/365 (58%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    R   +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    V  +  R  + C    L +DQ+Y L+  TQ+QL     P+G+  K+ 
Sbjct: 124 YIATGHYARV---VQLENGRYTLKCSAT-LAKDQTYALYNLTQEQLKRTLMPVGEYTKDQ 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++ L IA+K DSQDICFV  G Y   ++   A    EG+ V L+G++LGRH GI
Sbjct: 180 VREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHKGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+++G P FV+ +   ++ +++G  E    + +   ++N++     ED 
Sbjct: 240 THYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSLSYTLKANQLNFMS---IED- 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    + + KIR +       ++++  D V   FE+ +  +  GQA VFY  +     V+
Sbjct: 296 LTGEMRVWTKIRYNHKGAWGTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGEY----VV 351

Query: 379 GGGII 383
           GGG I
Sbjct: 352 GGGTI 356


>gi|282901416|ref|ZP_06309341.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193695|gb|EFA68667.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 350

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 208/372 (55%), Gaps = 37/372 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GYDVIG+TL L       K KG CC+ + + DA  +C 
Sbjct: 4   KVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCS-EGMVDAATICQ 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++ H + D  + F+  ++    S Y+AG TPLPC  CNRTVKF  +L   R+ LG+DV
Sbjct: 57  QLSIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLEYAREKLGSDV 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D G  R  + R  D  +DQSYFL+  +Q+ L    FPLG++ K   
Sbjct: 117 IATGHYARIAY---DHGTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKNDT 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQG--------KYFDVVKRINAGIALEGDIVHLNGQI 252
           R +A E GL  ADK +SQD+C V+          KY          +   GDIV  NG+I
Sbjct: 174 RKIAAEYGLKTADKPESQDLCLVESNGSMRAFLDKYL---------VPKPGDIVDSNGKI 224

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG+H+G+ +YTIGQR+GLG+A  EPL+V+ LD  ++ V+VG R         +  +NW+ 
Sbjct: 225 LGKHDGVHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWVS 284

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +  V+IR    PV    +    D V + F++ +  +  GQA V+Y  D
Sbjct: 285 MAEPRGTI----RGEVQIRYRSQPVLATIIPGETDCVQLVFDEPQFSITPGQAAVWYEGD 340

Query: 372 SNEARVLGGGII 383
               +VLGGGII
Sbjct: 341 ----KVLGGGII 348


>gi|110801338|ref|YP_696468.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens ATCC
           13124]
 gi|168211408|ref|ZP_02637033.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626]
 gi|24638315|sp|Q8XJH3|MNMA_CLOPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123049729|sp|Q0TPH2|MNMA_CLOP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110675985|gb|ABG84972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens ATCC 13124]
 gi|170710614|gb|EDT22796.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626]
          Length = 359

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD 
Sbjct: 65  QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +
Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+
Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++     E  +
Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+G
Sbjct: 300 ----EVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351

Query: 380 GGIIS 384
           GGII 
Sbjct: 352 GGIIE 356


>gi|289450037|ref|YP_003475194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184584|gb|ADC91009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 380

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 203/363 (55%), Gaps = 11/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+VAMSGGVDSSV A LL   GYDV G T+Q++ N R+ +     CC+   V DARRV 
Sbjct: 5   KVLVAMSGGVDSSVAAKLLVDHGYDVTGATMQIWQNEREENHCDRGCCSLSAVEDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I + +YV ++++ FR  VI PF  +Y  GETP PC+ CNR +KF + L     +G D 
Sbjct: 65  AKIGIPYYVLNFKDDFRKQVIAPFVDAYWQGETPNPCILCNRHIKFEEFLQKALMMGFDH 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    V +    R  +       +DQ+Y L+  TQQQL  L  PLGD+ KE V
Sbjct: 125 IATGHYGR---VVYNQATGRYALALSATTAKDQTYALYTLTQQQLSHLLLPLGDLVKERV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A E GL +A+K DSQ+ICFV    Y   V+  +A  +  G+ +  +G +LGRH G+I
Sbjct: 182 REIALEAGLPVANKRDSQEICFVTDNNYARFVEEFSARTSRPGNFILSDGTVLGRHRGLI 241

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GLG+A   PLFV  L  +++ VI+   E L    +      W       + +
Sbjct: 242 HYTIGQRKGLGIAYKHPLFVKALRMDTNEVILAADEDLYATALIANNPVWSAWPKLSEPL 301

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               K  ++ R++  P  ++    DD V + F + +  +  GQA V Y  D     VLGG
Sbjct: 302 --SVKAKIRYRATAAPATLY-PLADDQVGLIFAEPQRAITPGQAVVCYKDD----LVLGG 354

Query: 381 GII 383
             I
Sbjct: 355 ATI 357


>gi|168207849|ref|ZP_02633854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens E str. JGS1987]
 gi|169343749|ref|ZP_02864748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens C str. JGS1495]
 gi|169298309|gb|EDS80399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens C str. JGS1495]
 gi|170660837|gb|EDT13520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens E str. JGS1987]
          Length = 359

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD 
Sbjct: 65  QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +
Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+
Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D +
Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----DKL 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+G
Sbjct: 296 EGHMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351

Query: 380 GGIIS 384
           GGII 
Sbjct: 352 GGIIE 356


>gi|189426122|ref|YP_001953299.1| tRNA-specific 2-thiouridylase MnmA [Geobacter lovleyi SZ]
 gi|226704771|sp|B3E966|MNMA_GEOLS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189422381|gb|ACD96779.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter lovleyi SZ]
          Length = 354

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 217/371 (58%), Gaps = 31/371 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ VAMSGGVDSSVVAALL++ G++VIG+T+QL+    +         G   +D  +V  
Sbjct: 3   RIAVAMSGGVDSSVVAALLQQQGHEVIGITMQLFEPCSSGP-------GTPAHDGAQVAA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H++   E +FR+ +I  F   Y  G+TP PC+ CNR +KF  LL   R+LGA++L
Sbjct: 56  QLGIPHHLLRLEPQFRDLIIDNFIDQYRQGQTPNPCILCNRLIKFGLLLEQARELGAELL 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCR---PMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           ATGHY+R    VG DG     +C      +  +DQSYFL++ +QQQL  + FPLG++  K
Sbjct: 116 ATGHYVRRT--VGPDG-----LCHLRTAANQAKDQSYFLYSLSQQQLRQVIFPLGEIASK 168

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRH 256
           + VR LA   GL +A K DSQ++CF+    Y   +++   GI A  G+IVH+ GQ+LGRH
Sbjct: 169 DEVRSLATGFGLAVATKGDSQEVCFIPNDDYAAFLEQ--QGIKASPGNIVHIGGQVLGRH 226

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           +G   YTIGQR+GLG+   EPL+V+ +D + + ++VG ++ L    +   +I+W+     
Sbjct: 227 SGTHRYTIGQRKGLGIGWSEPLYVLEIDSSRNLIVVGEQQHLLKAGLIGADISWI----- 281

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                  F    KIR    PVP  V+   DD   V F++++  V  GQ  VFY  D    
Sbjct: 282 IPPPATSFNTTCKIRYRHQPVPCRVELLADDQCRVLFDEAQRSVTPGQFVVFYQDD---- 337

Query: 376 RVLGGGIISGS 386
           +VLGGG I  +
Sbjct: 338 QVLGGGRIQAA 348


>gi|162455579|ref|YP_001617946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sorangium cellulosum 'So ce 56']
 gi|205828973|sp|A9EXM5|MNMA_SORC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161166161|emb|CAN97466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sorangium cellulosum 'So ce 56']
          Length = 385

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 203/377 (53%), Gaps = 21/377 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV +AMSGGVDSSV AA L   GY+V+GVTL L++       K  CCA +D +DARRV D
Sbjct: 23  RVFIAMSGGVDSSVAAARLCDAGYEVVGVTLHLWDYPDDGSVKSRCCAPEDQHDARRVAD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HY FD    FR  V+ PF  +Y AGETP PCV CNR+VK  +L  +  +LG   +
Sbjct: 83  HLGIPHYTFDRRALFREHVVDPFVEAYLAGETPSPCVACNRSVKLRELFPLAERLGVSWV 142

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+ + + G R   + R  D  +DQSYFL      +L  L FPLGD  K+ VR
Sbjct: 143 ATGHY--ARVVLEEGGAR---LYRGRDRHKDQSYFLHMLRSDELSRLLFPLGDSTKDEVR 197

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A   GL  A+K +SQ++CF+  G+Y   V    A     G IV  +G+++G H G+  
Sbjct: 198 AEAIARGLPGAEKGESQELCFIPSGRYAPFVADRAADRLRPGPIVDRDGRVVGSHGGVHG 257

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQR+G+GV++G P FVV LD  S  V +G    L      + +  W  D +F     
Sbjct: 258 FTVGQRKGIGVSLGRPAFVVGLDAASGAVHLGDEGDLYAAGAEIADAVWCDDAVFP---- 313

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              +  V++R+  +  P  ++R  D           F      V+ GQ  V Y  D    
Sbjct: 314 --LEAEVRVRARHEAAPGIIERRRDPATGAESFVARFASPVRSVSPGQMAVVYRGD---- 367

Query: 376 RVLGGGIISGSKRSDAV 392
           RVLGGG I  + RS A 
Sbjct: 368 RVLGGGRIKAALRSQAA 384


>gi|302387623|ref|YP_003823445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium saccharolyticum WM1]
 gi|302198251|gb|ADL05822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium saccharolyticum WM1]
          Length = 372

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 210/367 (57%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++       ++  G CC    V DARRV
Sbjct: 18  KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTGTQEENGGCCGLSAVDDARRV 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV +++E F++ VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 78  AWDLGIPYYVMNFKEEFKSQVIDYFVGEYQKGRTPNPCIACNRYVKWESLLKRSLDIGAD 137

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY +  +L  G     R  + + +   +DQ+Y L+  TQ QL     P+G   K+
Sbjct: 138 YIATGHYAQIEKLPNG-----RYALKKSVTAAKDQTYALYNLTQHQLSHTLMPVGAYSKD 192

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A  + L +A K DSQ+ICF+    Y   ++      A EG+ V L+GQ++GRH G
Sbjct: 193 QIREIADRINLMVAHKPDSQEICFIPDNDYAGFIEESAGEKAPEGNFVDLSGQVIGRHKG 252

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           I +YT+GQR+GL ++MG P+FVV +   ++ V++G  + +    +    INW+  DGL  
Sbjct: 253 ITHYTVGQRKGLNLSMGRPVFVVEIRPEANEVVIGTGDDVFSQTLRANHINWMAVDGLHG 312

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376
           +++    +   KIR S       ++  +DGV    F++ +  +  GQA VFY  D     
Sbjct: 313 ESM----RVLAKIRYSHKGAMCTIREAEDGVVECRFDEPQRAITPGQAVVFYEGD----Y 364

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 365 VVGGGTI 371


>gi|197119634|ref|YP_002140061.1| tRNA-specific 2-thiouridylase MnmA [Geobacter bemidjiensis Bem]
 gi|197088994|gb|ACH40265.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
          Length = 355

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 215/377 (57%), Gaps = 29/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72
           +  N K  +V VAMSGGVDSS VAALLK  G +VIG+ ++L+    +  + KG       
Sbjct: 1   MSGNFKGKKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V + + +  ++   EE+F   ++  F + Y  GETP PCV CNR VKF  LL  
Sbjct: 54  --DAQIVAEYLGIEFHLVHLEEQFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LGA+ LATGHY+R+     DDG    ++ +   L +DQSYFL+  TQ+QL  + FPL
Sbjct: 112 ALELGAEYLATGHYVRTSR---DDGGSYHLL-KAAFLAKDQSYFLYTLTQKQLSHVVFPL 167

Query: 193 GDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           GDM  K+ VR LA + GL +A KSDSQ+ICFV    Y   +++        GDIVH++G 
Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGT 227

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LGRH G   YTIGQRRGLGVA  EPL+VV +D    RV+VG    L    +   ++NW+
Sbjct: 228 VLGRHGGTHRYTIGQRRGLGVAWKEPLYVVSIDALQGRVVVGEAGQLFASGLVACDLNWV 287

Query: 312 GDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFY 368
                    V+G  F+   KIR  Q P+   V+   +G+  V F + +  V  GQ+ VFY
Sbjct: 288 -------VPVEGETFETTCKIRYRQQPIACRVKLLGEGLGEVYFAEPQKSVTPGQSVVFY 340

Query: 369 TSDSNEARVLGGGIISG 385
             D     +LGGG I G
Sbjct: 341 REDE----LLGGGRIVG 353


>gi|197122790|ref|YP_002134741.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter sp. K]
 gi|196172639|gb|ACG73612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. K]
          Length = 351

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/364 (42%), Positives = 203/364 (55%), Gaps = 13/364 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSS  AALL   G++VIGVT+++ +   A++ + SCCA  DV DAR   
Sbjct: 1   MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSDAARGR-SCCAPDDVEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  YV + E RFR  VI  F   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGAK- 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    V + G RR ++    D  +DQSYFL+   Q  L D+ FP+G + K  V
Sbjct: 119 LATGHYAR----VEERGGRRALLT-AADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +ADK DSQ+ICFV +G   D V          G+IV   G++LGRH+G+ 
Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDYVALRAPARIRPGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV LD  ++RV+VG  E     R  +RE +W+       AV
Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAAAARVVVGSAEEASRDRFEVREASWVSGAPPAGAV 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +  V+ R   +   V       G  V   +   GVA GQA VFY  D     V+GG
Sbjct: 294 E--LRVKVRHRHEGERGTVRAVSGGAGAEVRLARPVRGVAPGQAAVFYAGDE----VVGG 347

Query: 381 GIIS 384
           G I+
Sbjct: 348 GRIA 351


>gi|223936336|ref|ZP_03628248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [bacterium Ellin514]
 gi|223894854|gb|EEF61303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [bacterium Ellin514]
          Length = 349

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/358 (40%), Positives = 203/358 (56%), Gaps = 12/358 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSS  AALL   GYDVIG+TL+L+     ++ +  CC  Q V DAR V + + + 
Sbjct: 1   MSGGVDSSAAAALLLEQGYDVIGITLKLWPQDCVNRAEDKCCGPQAVMDARSVSNKLGIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y+ D    F+  VI  FA  Y AG TP PCV CN  +KF  L+S  +QLGA+ +ATGH+
Sbjct: 61  YYLVDESADFQKQVIGYFAEEYKAGRTPNPCVMCNEKLKFGTLISRAQQLGAEYIATGHF 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R+      DG R  ++ R  D  +DQSYFLF+  Q QL    FPLG + K   R +AR+
Sbjct: 121 ARTEKSA--DGSRM-LLKRGRDPRKDQSYFLFSLRQDQLARTIFPLGQLTKTDTRTVARQ 177

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
             L  ADK +S +ICFV    Y   +++ N     +G+IV+++G +LG+H+GI  YTIGQ
Sbjct: 178 CELKTADKEESMEICFVPDNDYGKFLQQANLVKKHKGEIVNVHGHVLGQHDGIEFYTIGQ 237

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           RRGLG++  +PL+VV LD  ++RV+VG   +L+     +   NW+       +  + F+ 
Sbjct: 238 RRGLGISSAKPLYVVELDAINNRVMVGDESALDRDEFTVERCNWIPFA----SPPETFEV 293

Query: 327 FVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             KIR +       +    +G   V     +  +  GQACVFY  D     V+GGG I
Sbjct: 294 SAKIRYNHPGTGATITPQPNGTAKVKLHVPQRAITPGQACVFYQDD----LVVGGGWI 347


>gi|167037462|ref|YP_001665040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914208|ref|ZP_07131524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307724557|ref|YP_003904308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|320115876|ref|YP_004186035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|205810696|sp|B0K991|MNMA2_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|205815314|sp|B0K0P8|MNMA2_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|166856296|gb|ABY94704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889143|gb|EFK84289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307581618|gb|ADN55017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|319928967|gb|ADV79652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 364

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 213/366 (58%), Gaps = 14/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           RV + MSGGVDSSV A LLK+ G+DVIG+T++++  +  KA     SCC+ +   DA++V
Sbjct: 6   RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAKKV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + HY  D  + F + ++  F + Y  G TP PCV CNR +KF +LL    +LGA 
Sbjct: 66  AEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KKE 
Sbjct: 126 YIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R LA E+ L +A K +SQ+ICF+    Y  ++KR        G+   ++G+ LG H GI
Sbjct: 183 IRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHKGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++     E  
Sbjct: 243 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISIEKLEKE 302

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR ++++   +     +D V V F K +  +  GQ+ VFY  D     V+
Sbjct: 303 M----KVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 354

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 355 GGGIIE 360


>gi|238926764|ref|ZP_04658524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas flueggei ATCC 43531]
 gi|238885296|gb|EEQ48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas flueggei ATCC 43531]
          Length = 366

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/364 (41%), Positives = 202/364 (55%), Gaps = 14/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80
           RVVVAMSGGVDSSV AALL+  GY+V+GVT++L    R A     SCC+   V DARRV 
Sbjct: 10  RVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEGRDADPDGRSCCSLSSVDDARRVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D+ E F+  VI  F   YA G TP PC+ CNR +KF  LL   R LGA  
Sbjct: 70  DILGIPHYVMDFTEPFQQLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLGKIRALGAQH 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+    DG     + + +D  +DQSY L+  TQ+ +  + FPLGD +K+ +
Sbjct: 130 IATGHY--ARITRTGDGIYH--LRKGIDTAKDQSYVLYHLTQKMMDHVLFPLGDYRKDEI 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL +A K++SQ+ICFV    Y   ++         G I    G ILG H GI 
Sbjct: 186 RHMAEDYGLPVAHKAESQEICFVPHDDYKSYLRMHALQTMRPGAITDRAGHILGTHEGIA 245

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG++   PL+V+ LD   +RVIVG  + +    +    ++W          
Sbjct: 246 FYTIGQRRGLGISAEHPLYVIALDAAENRVIVGASDEVFACALTASNLSW----TLPQPP 301

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                   KIR  +     +++   DG V V F + +  V  GQ+ VFY  D+    VLG
Sbjct: 302 HAPRSVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA----VLG 357

Query: 380 GGII 383
           GG I
Sbjct: 358 GGSI 361


>gi|167040124|ref|YP_001663109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|166854364|gb|ABY92773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
          Length = 387

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 213/366 (58%), Gaps = 14/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           RV + MSGGVDSSV A LLK+ G+DVIG+T++++  +  KA     SCC+ +   DA++V
Sbjct: 29  RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAKKV 88

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + HY  D  + F + ++  F + Y  G TP PCV CNR +KF +LL    +LGA 
Sbjct: 89  AEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 148

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KKE 
Sbjct: 149 YIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 205

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R LA E+ L +A K +SQ+ICF+    Y  ++KR        G+   ++G+ LG H GI
Sbjct: 206 IRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHKGI 265

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++     E  
Sbjct: 266 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISIEKLEKE 325

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR ++++   +     +D V V F K +  +  GQ+ VFY  D     V+
Sbjct: 326 M----KVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 377

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 378 GGGIIE 383


>gi|168214260|ref|ZP_02639885.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969]
 gi|170714272|gb|EDT26454.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969]
          Length = 359

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 209/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD 
Sbjct: 65  QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +
Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G  LG+H GI+
Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNALGKHKGIV 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++     E  +
Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+G
Sbjct: 300 ----EVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351

Query: 380 GGIIS 384
           GGII 
Sbjct: 352 GGIIE 356


>gi|118580257|ref|YP_901507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter propionicus DSM 2379]
 gi|205816920|sp|A1AQ29|MNMA_PELPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118502967|gb|ABK99449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter propionicus DSM 2379]
          Length = 355

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 211/374 (56%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC-CAGQDVYDARRV 79
           M++ VAMSGGVDSSV AALLK  G+++IG+T+Q +          SC  AG   +DA  V
Sbjct: 1   MKIAVAMSGGVDSSVAAALLKEQGHEIIGITMQFFAP--------SCQGAGTPAHDAAVV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + ++H++ D E  FR  +I  F S Y +G+TP PCV CNR VKF  LL   R+ GAD
Sbjct: 53  AAHLGITHHLLDLEHDFRQLIINDFISQYRSGQTPNPCVRCNRFVKFGLLLDAARERGAD 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198
           +LATGHY R+   +  DG R   +    +L +DQ+YFL   +Q++L  + FPLGD+  K+
Sbjct: 113 LLATGHYARTS--IDPDGTRHLRVA--ANLRKDQTYFLHTLSQERLARVVFPLGDIGSKD 168

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VRDLA   GL +A+K DSQ++CF+    Y   ++   A     GDIVH+NG++LGRH G
Sbjct: 169 EVRDLAHRFGLPVAEKGDSQEVCFIPNDDYVSYLEENCALGGETGDIVHVNGRLLGRHRG 228

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQR+GLG+A  EPL+VV +D     V+VG    +    +   E+ W+     E+
Sbjct: 229 THRYTIGQRKGLGIAWSEPLYVVEIDAARKLVVVGEEPHVYAQGLKAEEVGWIIAPGKEE 288

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F+   KIR    PV   V     G   V F +    V  GQ+ VFY  D     V
Sbjct: 289 -----FEASCKIRYRHQPVACRVTLLQGGACRVLFHEPLKAVTPGQSVVFYQDDE----V 339

Query: 378 LGGGIISGSKRSDA 391
           LGGG I+ + + D 
Sbjct: 340 LGGGRITAAIKRDG 353


>gi|220929349|ref|YP_002506258.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulolyticum H10]
 gi|219999677|gb|ACL76278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulolyticum H10]
          Length = 359

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 14/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79
           +V++ MSGGVDSSV AA+L R GY+VIGVTLQ++      +RK  G CC+   V DARRV
Sbjct: 5   KVMLGMSGGVDSSVAAAILLRQGYEVIGVTLQIWQDMDEERRKSEGGCCSLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV ++++ F   VI  F   Y  G TP PC+ CNR VK+  +L     +G D
Sbjct: 65  ANKLGIPYYVLNFKDIFSKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMGID 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    + D    R I+ + +  ++DQ+Y L+  TQQQL     P+GD  K+ 
Sbjct: 125 YIATGHYAK---VIQDAETGRFILKKSVTDKKDQTYALYNLTQQQLSHTLMPVGDYTKDE 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A+E+GL +A K DSQ+ICF+    Y   +        + G  V   G +LG H GI
Sbjct: 182 IREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFVDTKGNVLGNHKGI 241

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           ++YTIGQR+GLG+A G+P+FVV +D  ++ V++G    +   ++   ++N++      + 
Sbjct: 242 VHYTIGQRKGLGIAFGKPMFVVAVDPVNNTVVLGDDSEVFSEKLTASDLNFIS----IEK 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +DG +   KIR S    P  +   D+  + V F+  +  +  GQ+ VFY  D     V+
Sbjct: 298 PIDGMRVNAKIRYSAKEAPATISIIDENRIRVVFDTPQRAITPGQSVVFYDGDV----VV 353

Query: 379 GGGII 383
           GGG I
Sbjct: 354 GGGTI 358


>gi|78043170|ref|YP_361010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575599|sp|Q3AA24|MNMA_CARHZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77995285|gb|ABB14184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 365

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 210/366 (57%), Gaps = 14/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AALL   GY+V+GVT+Q+++ +     +    CC+   V DARRV
Sbjct: 8   KVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVGCCSIYAVNDARRV 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV ++ E F   VI  F   Y  G TP PC+ CNR +KF  LL     LG D
Sbjct: 68  ADRLGIPYYVLNFRELFERKVIDYFTEEYLRGRTPNPCIACNRYIKFDALLKKALSLGMD 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R  +Y  D GK    + R +D ++DQ+Y L+  TQ  L  L  PLG+  KE 
Sbjct: 128 YMATGHYARV-VYKDDIGKYG--LFRGVDRKKDQTYVLYNLTQDMLRRLLLPLGEYTKEQ 184

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR+LAR+  L  ADK +SQ+ICFV    Y   +K         G+ V +NG++LG+H G 
Sbjct: 185 VRELARKYNLVTADKPESQEICFVPDNDYRKFLKERRGEEIKPGNFVDVNGRVLGQHQGY 244

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG+A+G+P +VV +   ++ V++G    +    +   ++N+    L+ D 
Sbjct: 245 PYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIGEASEIFSPGLIASDLNF----LWFDE 300

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + + F+   +IR +  P P  V+R   D V V F + +  +  GQA VFY  D     +L
Sbjct: 301 IPERFEAQAQIRYNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFYRGDE----LL 356

Query: 379 GGGIIS 384
           GGG I 
Sbjct: 357 GGGTIE 362


>gi|108756833|ref|YP_631693.1| tRNA-specific 2-thiouridylase MnmA [Myxococcus xanthus DK 1622]
 gi|123374481|sp|Q1D6N0|MNMA_MYXXD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|108460713|gb|ABF85898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Myxococcus xanthus DK 1622]
          Length = 348

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/364 (43%), Positives = 203/364 (55%), Gaps = 18/364 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSS  AALLK  G++VIG+TL+++ S +     GSCC+  D+ DAR V 
Sbjct: 1   MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKATCGSCCSPDDIDDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T+ +  YV + EE F++ VI PF  SY  G TP+PCV CNR VKF+ LL   R LGA  
Sbjct: 60  QTLGIPFYVANAEEIFQDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGAR- 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R     G     R ++ R +D  +DQSYFLF   Q +L D+ FP+G M K  V
Sbjct: 119 LATGHYARVEEVDG-----RFVLRRAVDAAKDQSYFLFTLGQDELRDILFPVGGMTKAEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A   GL  + K +S +ICFV  G Y   V+++ AG    GDIV   G +LG H GI 
Sbjct: 174 RAVAERHGLVTSQKPESMEICFVPDGDYAGFVEKV-AGPQPAGDIVDTEGNVLGTHQGIH 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GL +  GE  +V  L+  + RV+VGP E        L + +W+         
Sbjct: 233 RYTVGQRKGLNLGGGEIRYVHRLEPETQRVVVGPAEGTGRDNFGLLQPHWVDGPPPASQP 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V+     V+IR         V  +  G V V  +     V  GQA V Y  D    RVLG
Sbjct: 293 VE-----VRIRHRHSGAQGRVHVSPHGLVSVKLDAPARAVTPGQAAVVYDQD----RVLG 343

Query: 380 GGII 383
           GG I
Sbjct: 344 GGWI 347


>gi|303241870|ref|ZP_07328364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetivibrio cellulolyticus CD2]
 gi|302590544|gb|EFL60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetivibrio cellulolyticus CD2]
          Length = 360

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 216/365 (59%), Gaps = 16/365 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRVC 80
           V++ MSGGVDSSV AA+L   GYDVIGVT+Q++   K   +  +G CC+   V DAR V 
Sbjct: 6   VMIGMSGGVDSSVAAAVLLEKGYDVIGVTMQIWPETKEEVKLTEGGCCSLSAVDDARGVA 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++ + +YV +++E F   VI  F   Y  G+TP PC+ CNR VKF  LLS    +G D 
Sbjct: 66  NSLGIPYYVLNFKEVFEEKVINYFIDEYLKGKTPNPCIACNRHVKFESLLSKAVSMGLDY 125

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY    +   D+ ++R ++ + +  ++DQ+Y L+  TQ QL  +  P+G+  K+ V
Sbjct: 126 VATGHY---AIIEYDENRKRYLLKKSVTQQKDQTYALYNLTQDQLSKVLMPIGNYSKDVV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A E+GL +A K DSQ+ICFV    Y   ++       + G+ V   G ILGRH G+I
Sbjct: 183 RQKAAELGLCVASKPDSQEICFVDDNNYGRFIQENTDKKIVPGNFVDTKGNILGRHKGLI 242

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
           +YT+GQR+GLG+A G+P++V+ LD  ++ VI+G    +   ++   ++N++  DGL+E  
Sbjct: 243 HYTVGQRKGLGIAFGKPMYVIGLDVKNNNVILGDNSEVFSDKLIADDLNFISIDGLYEPM 302

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V       KIR S+++     +   +  V V+F+  +  +  GQ+ VFY  D     V+
Sbjct: 303 RVKA-----KIRYSAKEGDATIIPIENGKVRVEFDTPQRAITPGQSVVFYEDDI----VV 353

Query: 379 GGGII 383
           GGGII
Sbjct: 354 GGGII 358


>gi|253580125|ref|ZP_04857392.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848644|gb|EES76607.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39BFAA]
          Length = 360

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 13/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L K  G + IG T++L+ N     KR+ +CC+  DV DAR VC
Sbjct: 3   KAIIAMSGGVDSSVAALLTKETGDECIGATMKLFHNEDIGVKREKTCCSLDDVEDARNVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YVF++ ERF+  V+  F  +Y  G TP PC+DCNR +KF  +    R+L  D 
Sbjct: 63  YRMGIRYYVFNFSERFKEDVMDRFVDAYEHGSTPNPCIDCNRYLKFDKMFQRMRELEYDY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R      D+ K R ++ + +D  +DQSY L+  TQ+QL  +  PLG ++K  V
Sbjct: 123 IVTGHYARVEY---DEEKNRYLLKKAVDDTKDQSYVLYMLTQEQLAHISLPLGGLRKTEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A + G   A K DSQDICFV  G Y   +++     ++ GD V   G ILG+H GII
Sbjct: 180 REIAEKHGFVNARKHDSQDICFVPDGDYAKFIEQYTGRKSIPGDFVDTEGNILGKHKGII 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YT+GQRRGLG+     L+V  +   +++V++G  E L    +   ++N +      +++
Sbjct: 240 HYTLGQRRGLGIPAASRLYVCDISPKTNQVVLGNNEDLFHSELTATKVNLISC----ESL 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   KIR           + +DGV +V F+K +  +  GQA V Y  D     V+G
Sbjct: 296 KEPMRLKAKIRYRHPEQEAVAWQTEDGVLHVRFDKPQRAITRGQAVVLYDGDI----VVG 351

Query: 380 GGIIS 384
           GG+I 
Sbjct: 352 GGVIE 356


>gi|159897370|ref|YP_001543617.1| tRNA-specific 2-thiouridylase MnmA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|205816856|sp|A9AYA7|MNMA_HERA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|159890409|gb|ABX03489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 357

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 212/369 (57%), Gaps = 15/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++VAMSGGVDSS+ A LLK  G+DV GVT+ L+        +  CC+ +    ARRVC 
Sbjct: 3   KIMVAMSGGVDSSLTAVLLKEQGHDVTGVTMHLWEGDDNGIMESQCCSVEMTAGARRVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++ +YVF+Y++ FR  VI  F   Y++G TP PC+ CNR +KF  LL     LG D L
Sbjct: 63  QYDIPYYVFNYQKDFRKHVIDYFLREYSSGATPNPCLACNRDLKFRVLLERAELLGFDGL 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGH+++    +   G++   + R +D+ +DQSY L+  +Q++L  L FPLG   K  VR
Sbjct: 123 ATGHFVQ----ITGGGEQPYDLRRGIDINKDQSYVLYMLSQRELGRLHFPLGGFTKPQVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +ARE GL  ADK +S DICF+    Y   +      I   G IV+ +G +LG+H G+  
Sbjct: 179 QMARERGLVTADKPESMDICFIPDNNYRRFLNEERPEIMQPGPIVNRHGTVLGQHKGLPQ 238

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+A G PLFV+ +D   + +IVG  + LE     + ++  +  G  E  + 
Sbjct: 239 YTIGQRKGLGIAAGSPLFVIEIDTVRNLLIVGDADELERRDFVIDDVRSV-YGQIEAGIY 297

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                 V+IR+  + VP  +   +DG +++ +++ +  V  GQA V Y  D    RV GG
Sbjct: 298 A-----VQIRAHGEAVPATITPREDGTLHIRYDQPQRSVTPGQAAVLYRDD----RVFGG 348

Query: 381 GIISGSKRS 389
           G IS  + S
Sbjct: 349 GRISTERYS 357


>gi|291562415|emb|CBL41231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [butyrate-producing bacterium SS3/4]
          Length = 358

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 208/367 (56%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    +   +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQEEDSCTVEENGGCCGLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T+ + +YV ++ + F+  VI  F + Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 64  AWTLGIPYYVMNFRKEFQKNVIDYFVAEYLHGRTPNPCIACNRYVKWEALLERSLEIGAD 123

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R S+L  G     R  +   +   +DQ+Y L+  TQ QL     P+GD  K+
Sbjct: 124 YIATGHYARISQLPNG-----RYTIRNSVTAAKDQTYALYNLTQFQLSKTLMPIGDYTKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A + GL +A K DS +ICFV    Y   ++R  + +   G+ V  NG ILG+H G
Sbjct: 179 EVRKIAEDRGLAVAKKKDSMEICFVPDNDYAGFIEREASDVPGCGNFVDKNGVILGKHKG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           I +YT+GQR+GL +AMG P+FV  +   ++ V++G    +    +  R++NW+  DGL  
Sbjct: 239 ITHYTVGQRKGLNLAMGHPVFVTGIRPETNEVVIGDGNDVFSDHLICRDVNWMAIDGLHG 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      +   KIR S    P  ++   DG V   F++ +  +  GQA VFY  +     
Sbjct: 299 EEK----EVLAKIRYSHKGSPCIIRELPDGTVECQFKEPQRAITPGQAVVFYEDEC---- 350

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 351 VVGGGTI 357


>gi|254478804|ref|ZP_05092171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035259|gb|EEB75966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydibrachium pacificum DSM 12653]
          Length = 376

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 221/380 (58%), Gaps = 17/380 (4%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65
           RL +L + KN    RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +  +A + +G
Sbjct: 7   RLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +K
Sbjct: 64  GCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL
Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FPLG  KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+ 
Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
               G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +  
Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL-- 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             I++  + +  D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+
Sbjct: 299 --ISYNNNFISIDKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQS 356

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D     V+GGGII 
Sbjct: 357 VVFYDGDI----VVGGGIIE 372


>gi|89895170|ref|YP_518657.1| hypothetical protein DSY2424 [Desulfitobacterium hafniense Y51]
 gi|122482441|sp|Q24US9|MNMA_DESHY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89334618|dbj|BAE84213.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 370

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 204/370 (55%), Gaps = 14/370 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ   S       G CC+   + DARRV  
Sbjct: 8   KVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPS-GGPDDVGGCCSITAIDDARRVAH 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV ++   F   VI  F ++Y +GETP PC  CNR V++ + L   R LGAD L
Sbjct: 67  QLGIPHYVLNFRTIFDENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGADYL 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    + D    R  + RP D  +DQ+Y L+  TQ QL    FPL D KKE +R
Sbjct: 127 ATGHYAK---VLQDPQSGRCFLSRPTDTWKDQTYMLYNLTQDQLKHTLFPLADYKKEHIR 183

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E GL  ++ K DSQ+ICF+    Y   ++  +      G+ V   G ILGRH G+I
Sbjct: 184 EMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPEKIKPGNFVDRQGNILGRHQGLI 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT+GQR+GLGV  G+P+FV+  +   + VI+G  + +  H +   ++NW+     E  +
Sbjct: 244 NYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAIPGVEGPL 303

Query: 321 VDGFKCFVKIRSSQDP-VPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTSDSNE 374
               K   K   ++   +P+       G     V V+F   +  +  GQA VFY     E
Sbjct: 304 TVQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVFY---QGE 360

Query: 375 ARVLGGGIIS 384
             V GG II+
Sbjct: 361 LVVGGGKIIT 370


>gi|182418877|ref|ZP_02950134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum 5521]
 gi|237667388|ref|ZP_04527372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377160|gb|EDT74728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum 5521]
 gi|237655736|gb|EEP53292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 360

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 207/365 (56%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +V++ MSGGVDSSV A LLK  GY+VIG T+Q++   K   +R+G CC+   V DARRVC
Sbjct: 6   KVLIGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEFEEREGGCCSLSAVEDARRVC 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  YV ++ + F+  VI PF   Y  G TP PC++CN+ +KF +LL   R +GAD 
Sbjct: 66  DKLGIPFYVLNFRDYFKEKVIEPFIQEYMDGRTPNPCIECNKHLKFDELLRRARGIGADY 125

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R ++ R  D  +DQ+Y L+  TQ QL     P G  +K  +
Sbjct: 126 VATGHYAKIEERDG-----RYLLIRSDDDSKDQTYALYNFTQDQLAHTLMPCGAYEKTKI 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +          G+ V   G +LG+H GI+
Sbjct: 181 REIAKEIGLAVHNKKDSEEICFISDNNHGKYISEARPSRVKPGNFVDKEGNVLGKHKGIV 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+++G P+FV  ++  ++ VI+G  + +  + +   ++N++      D +
Sbjct: 241 YYTIGQRKGLGLSLGRPVFVTGINAKTNEVIIGSEDEIFKNDLIATDVNFIS----FDKL 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                   KIR S  P    +    +G V V F+  +  +  GQ+ VFY  +     V+G
Sbjct: 297 EGELNVQAKIRYSARPAEAIIYPLPNGKVKVSFKDKQRAITKGQSVVFYDKEV----VVG 352

Query: 380 GGIIS 384
           GGII 
Sbjct: 353 GGIIE 357


>gi|323485784|ref|ZP_08091119.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum
           WAL-14163]
 gi|323693136|ref|ZP_08107354.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum
           WAL-14673]
 gi|323400772|gb|EGA93135.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum
           WAL-14163]
 gi|323502619|gb|EGB18463.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum
           WAL-14673]
          Length = 359

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 210/367 (57%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEEPEIQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV +++  F+  V+  F   Y  G+TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  AENLGIPYYVMNFKREFKENVMDYFVQEYIEGKTPNPCIACNRFVKWESLLKRSMDIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + +     +DQ+Y L+  TQ QL     P+G+  K+
Sbjct: 125 YIATGHYARIEQLENG-----RYTLRKSATAAKDQTYALYNLTQHQLSHTLMPVGEYTKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A ++GL++A K DSQ+ICF+    Y   ++        EG+ V  +G++LGRH G
Sbjct: 180 EIRGMADKIGLNVAHKPDSQEICFIPDHDYAKFIEENTDCRLPEGNFVDKDGRVLGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           I +YT+GQR+GL +A+G P+FV  +  +++ V++G  E +   R+   ++NW+  +GL +
Sbjct: 240 ITHYTVGQRKGLNLALGRPVFVTEIRPDTNEVVIGDNEDVFSRRLTCGKLNWMAVEGLPD 299

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               DG K   KIR S    P  ++   +D V   F+  +     GQA VFY  +     
Sbjct: 300 ----DGMKVTAKIRYSHKGAPCMIRTIGEDLVECVFDDPQRAATPGQAVVFYDGEY---- 351

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 352 VVGGGTI 358


>gi|253699615|ref|YP_003020804.1| tRNA-specific 2-thiouridylase MnmA [Geobacter sp. M21]
 gi|251774465|gb|ACT17046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
          Length = 355

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 215/377 (57%), Gaps = 29/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72
           +  N K  +V VAMSGGVDSS VAALLK  G +VIG+ ++L+    +  + KG       
Sbjct: 1   MSANYKGRKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V + + +  ++   EE F   ++  F + Y  GETP PCV CNR VKF  LL  
Sbjct: 54  --DAQIVAEYLGIEFHLVHLEEEFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LGA+ LATGHY+R+     DDG    ++ +   L +DQSYFL+  TQ+QL  + FPL
Sbjct: 112 ALELGAEYLATGHYVRTSR---DDGGSYHLL-KAAFLAKDQSYFLYTLTQKQLSHVVFPL 167

Query: 193 GDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           GDM  K+ VR LA + GL +A KSDSQ+ICFV    Y   +++        GDIVH++G 
Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGA 227

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LGRH+G   YTIGQRRGLGVA  EPL+VV +D    RV+VG    L    +   ++NW+
Sbjct: 228 VLGRHSGTHRYTIGQRRGLGVAWKEPLYVVSIDALEGRVVVGEVGRLFAAGLVACDLNWV 287

Query: 312 GDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFY 368
                    V+G  F+   KIR  Q P+   V+   +G+  V F + +  V  GQ+ VFY
Sbjct: 288 -------VPVEGETFETTCKIRYRQQPIACRVKLLGEGLGEVFFAEPQKSVTPGQSVVFY 340

Query: 369 TSDSNEARVLGGGIISG 385
             D     +LGGG I G
Sbjct: 341 RDDE----LLGGGRIVG 353


>gi|167749316|ref|ZP_02421443.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702]
 gi|167657707|gb|EDS01837.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702]
          Length = 387

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 213/370 (57%), Gaps = 23/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +AMSGGVDSSV   LLK D Y+V G TL+L++SR  +   G C +  D+ DA+ +  
Sbjct: 32  KLAIAMSGGVDSSVALVLLK-DKYEVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 89

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V HY+ D  + F + V   F  SY +G TP PCV+CN T+KF  LL   ++ G + +
Sbjct: 90  KFGVPHYLLDMRDLFSDTVQKSFVQSYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 149

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLE-----RDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY+RS     D+   R ++ + ++ +     +DQSY L+  +QQQL    FPLG+M 
Sbjct: 150 ATGHYVRS---CYDEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 206

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A + GL  +DK DSQDICFV  G Y   ++R       +GD +  NG ++GRH
Sbjct: 207 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 266

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+I YTIGQRRG+G   G+P++V+  + +++ V +G  E L    +Y   +NW+    F
Sbjct: 267 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIA---F 323

Query: 317 EDAVVDGFKCFVKI--RSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           E    + FKC  K   R ++ P  V+ Q RN   V V F++    V  GQ  VFY  D  
Sbjct: 324 EYPESE-FKCRAKTRYRQTEQPCTVYPQGRNT--VRVVFDEKIRAVTPGQHVVFYDGDI- 379

Query: 374 EARVLGGGII 383
              VLGGG+I
Sbjct: 380 ---VLGGGVI 386


>gi|170760751|ref|YP_001786568.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|205810328|sp|B1KZE1|MNMA1_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|169407740|gb|ACA56151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 356

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 214/366 (58%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCITCNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G +LGRH GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNVLGRHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++IN++  D L E  
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   +DG V V+F++ +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFQEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|150015984|ref|YP_001308238.1| tRNA-specific 2-thiouridylase MnmA [Clostridium beijerinckii NCIMB
           8052]
 gi|205813680|sp|A6LSF2|MNMA_CLOB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149902449|gb|ABR33282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 358

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 217/365 (59%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK+ GYDVIG T+Q++ +  +  +R+G CC+   V DARRVC
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKQQGYDVIGATMQIWQHDEEFEEREGGCCSLSAVDDARRVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +++  YV ++ + F+  VI  F   Y  G+TP PC++CN+ +KF +LL   R +GAD 
Sbjct: 64  DKLDIPFYVLNFRDYFKEKVIDKFVQEYIDGKTPNPCIECNKHLKFDELLRRARGIGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +++   DD   R ++ R  D  +DQ+Y L+  TQ QL     P GD +K  +
Sbjct: 124 VATGHY--AKIEKRDD---RYLLIRSDDDRKDQTYALYNFTQDQLEHTLMPCGDYEKTKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +          G+ V  +G ILG+H GI+
Sbjct: 179 REIAKEIGLAVHNKKDSEEICFISDNNHGKYISEAEPNRVKPGNFVDKSGNILGKHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+++G P+FV  ++  ++ V++G  + +    +   ++N++     E  +
Sbjct: 239 YYTIGQRKGLGLSLGRPVFVTNINAKTNEVVLGSEDDIFKTELIATDVNFIPFDKLEKEI 298

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +    +G V V F++ +  +  GQ+ VFY    ++  V+G
Sbjct: 299 ----EVTAKIRYSARPAEATLIPLPNGRVKVIFKEKQRAITKGQSVVFY----DDEIVVG 350

Query: 380 GGIIS 384
           GGII 
Sbjct: 351 GGIIE 355


>gi|257060381|ref|YP_003138269.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8802]
 gi|256590547|gb|ACV01434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 8802]
          Length = 349

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 210/365 (57%), Gaps = 23/365 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GY+VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H++ D  + F+  ++    S Y AG TPLPC  CNR VKF  +L   RQ LG D 
Sbjct: 56  QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLDYARQELGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+  +R  + R +D  +DQSYFL+  +Q+ L    FPLGD  KE  
Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258
           R +A E  L  A K +SQD+C ++          + IN     EGDIV L G++LG+H G
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYINQK---EGDIVDLEGKVLGKHQG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLGVA  EPL+VV LD   ++VIV  R +       +  +NW+   + E 
Sbjct: 230 IHHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSHCTVTRLNWV--SIAEP 287

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +     +  ++ RSS  PV   +   D+ V + F++ E G+  GQA VFY  +     +L
Sbjct: 288 STPIRVETQIRYRSSAVPVD-LIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----LL 342

Query: 379 GGGII 383
           GGGII
Sbjct: 343 GGGII 347


>gi|188588033|ref|YP_001920516.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251778087|ref|ZP_04821007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|205813690|sp|B2V3V9|MNMA_CLOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188498314|gb|ACD51450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|243082402|gb|EES48292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 361

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 210/351 (59%), Gaps = 13/351 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIG T+Q++   ++  +R+G CC+   V DARRVC
Sbjct: 7   KVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARRVC 66

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +++  YV ++ + F+  VI PF   Y  G TP PC++CN+ +KF +LL   + +G D 
Sbjct: 67  DKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGVDY 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +++   DD   R ++ R  D  +DQ+Y L+  TQ QL     P G+  K+ +
Sbjct: 127 IATGHY--AKIEKKDD---RYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKDRI 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +     G    G+ V  +G +LG+H GI+
Sbjct: 182 REIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNVLGKHKGIV 241

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+++G P+FV  ++  ++ V++G  E +    +   ++N++  D L ++ 
Sbjct: 242 YYTIGQRKGLGLSVGRPVFVTDINPRTNEVVIGAEEDIFKTELIAGDLNFITFDKLEKEI 301

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
            V+      KIR S  P    +    DG V V F++ +  +  GQ+ VFY 
Sbjct: 302 EVEA-----KIRYSAKPAKATIVPLKDGRVKVVFDEKQRAITKGQSVVFYN 347


>gi|307265214|ref|ZP_07546773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919836|gb|EFN50051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 387

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 14/370 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           RV + MSGGVDSSV A LLK++G+DVIG+T++++  ++ KA     SCC+ +   DA++V
Sbjct: 29  RVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHAAKAFDSDKSCCSLRATQDAKKV 88

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + V HY  D+ E F + ++  F + Y  G TP PCV CNR +KF +LL    +LGA 
Sbjct: 89  AEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 148

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KKE 
Sbjct: 149 YIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 205

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R LA  + L +A K +SQ+ICF+    Y   +KR        G+   ++G+ LG H GI
Sbjct: 206 IRALAEGLKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHKGI 265

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++      + 
Sbjct: 266 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI----EK 321

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR ++++   +     +D V V F K +  +  GQ+ VFY  D     V+
Sbjct: 322 LKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 377

Query: 379 GGGIISGSKR 388
           GGGII    R
Sbjct: 378 GGGIIEKKVR 387


>gi|167751458|ref|ZP_02423585.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702]
 gi|167655704|gb|EDR99833.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702]
          Length = 358

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 15/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N      R+ SCC+  DV DAR V 
Sbjct: 4   KAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARSVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++++ +YVF++ +RF   VI  F ++Y  G TP PC+DCNR +KF  L    ++L  D 
Sbjct: 64  YSLDMPYYVFNFSDRFETDVIDRFINAYENGITPNPCIDCNRYLKFDKLYMRAKELDRDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R    V  DG  R ++ + +D  +DQSY L+  TQ+QL    FPLG+M+K   
Sbjct: 124 VVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKSQA 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   G   A K+DSQDICFVQ G Y D +++       +GD +  +G ++GRH G+I
Sbjct: 180 REIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDKDGNVIGRHKGVI 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG++  EPL+V  ++  S+ V +   + L    +   +IN     L     
Sbjct: 240 RYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDWLYSSIVKAGDIN-----LISVPE 294

Query: 321 VDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           + G  +   K+R         V +N D +   F++ +  V  GQA V Y  D+    V+G
Sbjct: 295 IKGEMRVKAKVRYRHTEQWATVTQNGDTITAVFDEPQRAVTCGQALVLYDGDT----VVG 350

Query: 380 GGII 383
           GG I
Sbjct: 351 GGTI 354


>gi|15606458|ref|NP_213838.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
 gi|6226257|sp|O67274|MNMA_AQUAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2983672|gb|AAC07238.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
          Length = 356

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 212/373 (56%), Gaps = 26/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARR 78
           MRV V MSGGVDSSV A LLK  G+DVI VTL+ +     + ++    CC+ +DV DA R
Sbjct: 1   MRVAVGMSGGVDSSVTALLLKEQGHDVIRVTLRFHTVEACEVNETHNVCCSPKDVQDASR 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
           V   + + H VF +EE F++ VI  F   Y  G TP PC  CNR VK        +Q+  
Sbjct: 61  VAKRLGIPHLVFSWEEIFKSKVIDYFVEEYKRGRTPNPCALCNREVKTGFFARYLKQVAD 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LATGHY +    + +D K   ++ RP D +RDQ+YFL    ++ L  L FPLG   K
Sbjct: 121 IDKLATGHYAK----IEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           E VR++A+  GL++A K DSQ++CF+     G+Y + +     G+     I H++G++LG
Sbjct: 177 EEVREIAKRYGLEVAQKRDSQEVCFLMGKSPGEYLEGILGKQRGL-----IKHVSGKVLG 231

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G+  YTIGQRRGLG++ G+P++V+ +D  ++ +IVG  E L   ++ ++EIN     
Sbjct: 232 EHEGVYRYTIGQRRGLGISYGKPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEIN----- 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            F   +        +IR    PVPV  +++ ++G  V F++   G+  GQ   FY  D  
Sbjct: 287 -FHVPLEKWENVSAQIRYRHKPVPVERIEKTEEGFLVKFKEDVRGITPGQVVAFYDGDV- 344

Query: 374 EARVLGGGIISGS 386
              +LGGGII  S
Sbjct: 345 ---LLGGGIIEES 354


>gi|182625650|ref|ZP_02953419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens D str. JGS1721]
 gi|177909052|gb|EDT71527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens D str. JGS1721]
          Length = 359

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 209/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80
           +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD 
Sbjct: 65  QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +
Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+
Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++     E  +
Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++  V V FE  +  +  GQ+ VFY  D     V+G
Sbjct: 300 ----EVEAKIRYSARPAKATISPMENVRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351

Query: 380 GGIIS 384
           GGII 
Sbjct: 352 GGIIE 356


>gi|95930240|ref|ZP_01312978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133703|gb|EAT15364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 346

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 205/366 (56%), Gaps = 22/366 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   V+VAMSGGVDSSV AALL   GY+VIG  ++L    ++ + +          DARR
Sbjct: 2   KKNTVLVAMSGGVDSSVTAALLIDQGYEVIGAHMRLLPGDQSIQGEA---------DARR 52

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +  +  D  + F  A+I  F   Y AG TP PCV CN+  KF  L ++  +LGA
Sbjct: 53  IAEELEIPFHSLDCRDTFNAAIIGDFCREYRAGRTPNPCVRCNQQFKFGALFALADELGA 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R      D  K    +CR +  ++DQSYFLF  +  QL  + FPLG + K 
Sbjct: 113 DYLATGHYARI-----DRQKDHVRLCRGLYKQKDQSYFLFVLSAAQLKRVLFPLGGLTKP 167

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+LA +  L    KS+SQDICFV    Y   ++R ++     G+IVH+NG++LG H+G
Sbjct: 168 EVRNLAEKYHLSSRKKSESQDICFVPDNDYIGFLERYDSPWPDHGEIVHINGKVLGTHHG 227

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+   EPL+V+ LD    RVIVG + +L+  R+ +R++ W        
Sbjct: 228 THRYTIGQRRGLGIGWTEPLYVIELDAEQQRVIVGEKAALQRDRLQVRDVTWSVPPQHTS 287

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             VD   C ++ R       + ++ N D V V F++ + GV  GQ  VFY  D     VL
Sbjct: 288 LRVD---CRIRYRHHPAMATLSIRPNGD-VDVVFDEPQYGVTPGQCAVFYDDDC----VL 339

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 340 GGGWIT 345


>gi|297545060|ref|YP_003677362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842835|gb|ADH61351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 364

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 14/369 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K+ RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +  +A + +G CC+   V DA
Sbjct: 3   KNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     +
Sbjct: 63  RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +ATGHY        D+ +RR ++ + +D  +DQ+Y L+  TQ QL  + FPLG  K
Sbjct: 123 DAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR LA+++GL +A K DSQ+ICFV    Y   ++         G+     G+ LG H
Sbjct: 180 KDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +    I++  + + 
Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL----ISYNNNFIS 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D    
Sbjct: 296 IDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDSPQRAITPGQSVVFYDGDI--- 352

Query: 376 RVLGGGIIS 384
            V+GGGII 
Sbjct: 353 -VVGGGIIE 360


>gi|330838778|ref|YP_004413358.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC
           35185]
 gi|329746542|gb|AEB99898.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC
           35185]
          Length = 352

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 211/363 (58%), Gaps = 19/363 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V VAMSGGVDSS+ AALL+  GY+V+G+T+QL +  +      S        DARRV D
Sbjct: 4   KVAVAMSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMNGVSSAAT-----DARRVAD 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V D+   F + V+  F + Y    TP PCV CNR +KF +LLS  ++ GAD L
Sbjct: 59  FLGIEHVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADFL 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R  +   +DG     + +  D ++DQSY L+   ++ L  + FPLG  +KE  R
Sbjct: 119 ATGHYVR--VEKEEDGSFS--LKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEETR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA+++ L +A+K++SQ+ICFV +  Y   + +        GDIV + GQILG+H G+  
Sbjct: 175 ALAQKLSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGLPF 234

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+A   PL+V+ LD+ ++RVIVG  E L    ++  ++NWL +   ++  V
Sbjct: 235 YTIGQRKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLMEEPTQEISV 294

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                  KIR     V   V   +DG V V F + +  V  GQ+ VFY+ +    R++GG
Sbjct: 295 HA-----KIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLVGG 345

Query: 381 GII 383
             I
Sbjct: 346 ATI 348


>gi|291542284|emb|CBL15394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus bromii L2-63]
          Length = 357

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 13/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L K  GYD  G+TL+L+ N     KR+ +CC+  D+ DARRVC
Sbjct: 4   KALIAMSGGVDSSVAAFLTKDMGYDATGITLKLFDNEDIGEKREKTCCSLDDIDDARRVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YV+++++ F+  VI  F  +Y  G TP PC+DCNR +KF  L+    +L  D 
Sbjct: 64  LKLGIPYYVYNFKDSFKENVIDRFIRAYENGTTPNPCIDCNRFIKFEKLIRRAEELDFDC 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY        D G  R ++ + +D  +DQSY L+  TQ+QL     PLG   KE V
Sbjct: 124 VVTGHYSTIEY---DKGADRYLLKKSVDSTKDQSYVLYCLTQRQLAKTLLPLGTYTKEKV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A E+GL  A K DSQDICFV  G Y   +++        G+ V   G ILG H GII
Sbjct: 181 REIANELGLINARKHDSQDICFVPDGDYAKFIEQYTGRTYPNGNFVDTKGHILGEHKGII 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG+A+  P++V   + +++ VI+     L    +Y  +IN +      D +
Sbjct: 241 RYTVGQRKGLGLALPHPMYVKEKNLDTNEVILCDNNELFSKELYATDINLIT----CDKI 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K   ++R SQ      V++ DD  +++ F++ +  ++ GQA V Y  +     V+G
Sbjct: 297 DKPIKVKARVRYSQPEKDAIVEQIDDNTLHIVFDEPQRAISKGQAAVLYDGEY----VVG 352

Query: 380 GGII 383
           GG I
Sbjct: 353 GGTI 356


>gi|307151112|ref|YP_003886496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7822]
 gi|306981340|gb|ADN13221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7822]
          Length = 353

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 208/364 (57%), Gaps = 23/364 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSS  AA L   GY+V+G+TL L       K KG CC+ + + DA  +C+ 
Sbjct: 4   VVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLM------KGKGQCCS-EGMVDAAFICEQ 56

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + + H++ D  + F+  +I    S Y AG TPLPC  CNR VKF  +L   RQ LG D +
Sbjct: 57  LGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYARQELGIDCI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    D+  +R  + R +D  +DQSYFL+  TQ  L    FPLG+  KE  R
Sbjct: 117 ATGHYARIRY---DETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGTIFPLGNQTKEETR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNGI 259
            +A E GL  ADK +SQD+C ++          + I+     EGDIV L G++LG+H GI
Sbjct: 174 RIANEFGLKTADKPESQDLCLIEAHGSMQAFLDQYIHQK---EGDIVDLKGKVLGKHKGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+G+GVA  EPL+VV LD   ++VIVG R         +  +NW+   + E +
Sbjct: 231 HHYTIGQRKGIGVAAAEPLYVVKLDPVMNQVIVGNRADAGKPECSVSRMNWV--SIAEPS 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +  V+ RSS  PV V +   D+ V + F++ + G+  GQA V Y  +     +LG
Sbjct: 289 SPIHTEVQVRYRSSAVPVDV-IPLGDNRVKLVFDEPQFGITPGQAAVLYDGEV----LLG 343

Query: 380 GGII 383
           GGII
Sbjct: 344 GGII 347


>gi|323702190|ref|ZP_08113857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532877|gb|EGB22749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 366

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 211/369 (57%), Gaps = 16/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYDARR 78
           +V+ AMSGGVDSSV AALL++ GY+V+GVT+Q+++    +   G    CC+   V DARR
Sbjct: 6   KVIAAMSGGVDSSVTAALLQQQGYEVVGVTMQIWDP-DVTVVDGDYVGCCSLSAVDDARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +YVF++ E F   VI  F   Y  G TP PC+ CNR +KF  LL   RQ+G 
Sbjct: 65  VANILGIPYYVFNFRELFTEKVIQYFVDEYLRGRTPNPCIACNRFIKFEALLQKARQMGF 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +RL   ++ KR  +  +  D  +DQ+Y L+  TQ Q+     PL D  KE
Sbjct: 125 DYIATGHY--ARLGYSEEYKRYTVR-KARDERKDQTYVLYGFTQDQIAHTLMPLADYTKE 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++AR  GL  A K +SQ+ICFV    Y + ++  +      G  + L G ++G+H G
Sbjct: 182 QVREMARRWGLPTATKPESQEICFVHDNNYRNFLEERSVEGIKPGPFLDLKGNVIGQHRG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I  YTIGQRRGLG+A GE ++VV +D   + VIVGP E++    +   + N+    +  D
Sbjct: 242 IPFYTIGQRRGLGIATGERVYVVDIDPERNAVIVGPEEAIWGTELIASDNNF----ILYD 297

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   ++R +  P P  ++  ++G V V F+  +  +  GQA V+Y  D     +
Sbjct: 298 KITGPTEVEAQVRYNSKPSPALLEPLENGLVKVTFKYPQRSITPGQAVVYYQGDY----L 353

Query: 378 LGGGIISGS 386
           +GGG I  S
Sbjct: 354 VGGGTIEKS 362


>gi|125973240|ref|YP_001037150.1| tRNA-specific 2-thiouridylase MnmA [Clostridium thermocellum ATCC
           27405]
 gi|256003718|ref|ZP_05428706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 2360]
 gi|281417440|ref|ZP_06248460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum JW20]
 gi|205813738|sp|A3DDC8|MNMA_CLOTH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|125713465|gb|ABN51957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum ATCC 27405]
 gi|255992279|gb|EEU02373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 2360]
 gi|281408842|gb|EFB39100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum JW20]
 gi|316940529|gb|ADU74563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 1313]
          Length = 359

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 14/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +V+V MSGGVDSSV AA+L   GY+VIG T+Q++       +  +G CC+   V DAR V
Sbjct: 5   KVMVGMSGGVDSSVAAAILLEQGYEVIGATMQIWPDTDEETKLVEGGCCSLSAVDDARSV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV ++++ F  +VI  F   Y  G TP PC+ CNR VKF  +L+    +G D
Sbjct: 65  ANKLGIPYYVLNFKDIFEKSVINYFKDEYLKGRTPNPCIACNRFVKFESMLNKALSMGID 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   DD K+R ++ + +  ++DQ+Y L+  TQ+QL  +  P+G+  KE 
Sbjct: 125 YIATGHY---AIITYDDNKKRYLLKKSVTQQKDQTYALYNVTQEQLKHILMPIGNFTKEQ 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A+E+GL +A K DSQ+ICFV    Y   ++         G  V   G ILG+H GI
Sbjct: 182 VRAKAKELGLYVASKPDSQEICFVNDNDYGKFIEENTDKEIKPGYFVDTKGNILGKHRGI 241

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQR+GLG+A+G+P++VV +D  ++ V++G    +    +   ++N++     E+ 
Sbjct: 242 IHYTVGQRKGLGIALGKPMYVVRIDAENNTVVLGDENEVYSKELTAYDLNFISIDKLEEP 301

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR S       +   +DG V V F+  +  V  GQ+ VFY  D     V+
Sbjct: 302 M----RVKAKIRYSAKEADAVIYPLEDGKVRVVFDTPQRAVTPGQSVVFYDGDI----VV 353

Query: 379 GGGII 383
           GGGII
Sbjct: 354 GGGII 358


>gi|291526521|emb|CBK92108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale DSM 17629]
          Length = 362

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K+  +G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV +++  F+  VI  F S Y    TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 64  AAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +      R  +   +  E+DQ+Y L+  TQ+QL     P+G+ +K  
Sbjct: 124 YIATGHYAR----IAQLPNGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEKPQ 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A E GL +A KSDSQDICFV    Y   ++         G+ V  +G ILGRH G+
Sbjct: 180 IRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHKGL 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+    PLFV  L   ++ V++   ESL     Y+ +IN++     ++ 
Sbjct: 240 IHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----QEH 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +  G +   K+R S       +   ++G +   F++ +  +  GQA VFY     +  VL
Sbjct: 296 ITPGTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFY----QDGHVL 351

Query: 379 GGGII 383
            GG I
Sbjct: 352 CGGTI 356


>gi|22299799|ref|NP_683046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosynechococcus elongatus BP-1]
 gi|30173409|sp|Q8CWM0|MNMA_THEEB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22295983|dbj|BAC09808.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Thermosynechococcus elongatus BP-1]
          Length = 369

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 24/365 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV  A LK  G+ V+G+TL L       K KG CC+ + + DA R+C+ 
Sbjct: 7   VVVGLSGGVDSSVAIASLKAQGHPVVGLTLWLM------KGKGQCCS-EGLVDAARLCEQ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141
           + V H++ D  E F   ++    S YA G TPLPC  CNR VKF  +L+ +R QLG D +
Sbjct: 60  LGVPHHIVDSREIFEKYIVNYLISGYANGVTPLPCSQCNRLVKFGPMLAYSREQLGIDYI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + +     D   R  + R +D  +DQSYFL+   Q+ L  + FPLG   K   R
Sbjct: 120 ATGHYAQVKYNPTSD---RYELWRAVDRHKDQSYFLYDLPQEILAHVLFPLGQQTKAETR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            LA + GL  A K +SQD+C ++  G     + +       +G+IV + G++LG H GI 
Sbjct: 177 ALAAQYGLPTASKPESQDLCLIEAHGSMRQFLDQYLP--RQQGEIVDVYGRVLGYHQGIH 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GLG+A  EPL+VV LD+  +RVIVG R +       +  +NW+     ++ +
Sbjct: 235 HYTIGQRKGLGIAAPEPLYVVALDREHNRVIVGDRATAGRRECTVARVNWVSIPPPKEPM 294

Query: 321 VDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                  V+IR    PVPV +    N + V ++F + + GV  GQA V+Y  D    R+L
Sbjct: 295 T----ATVQIRYRTPPVPVTIIPDANAEQVQLEFAEPQFGVTPGQAAVWYAGD----RLL 346

Query: 379 GGGII 383
           GGGII
Sbjct: 347 GGGII 351


>gi|326390968|ref|ZP_08212518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993010|gb|EGD51452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 376

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/380 (37%), Positives = 220/380 (57%), Gaps = 17/380 (4%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65
           RL +  + KN    RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +  +A + +G
Sbjct: 7   RLKNFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +K
Sbjct: 64  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +LL     + A  +ATGHY        D+ +RR ++ + +D  +DQ+Y L+  TQ QL
Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FPLG  KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+ 
Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
               G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +  
Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDEL-- 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             I++  + +  D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+
Sbjct: 299 --ISYNNNFISIDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQS 356

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D     V+GGG I 
Sbjct: 357 VVFYDGDI----VVGGGTIE 372


>gi|307265916|ref|ZP_07547465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919085|gb|EFN49310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 376

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 221/386 (57%), Gaps = 17/386 (4%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--K 59
           ++    RL +L + KN    RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +  +
Sbjct: 1   MIESTRRLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEE 57

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A + +G CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ 
Sbjct: 58  AVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIA 117

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CN+ +KF +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+ 
Sbjct: 118 CNKYIKFEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYN 174

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            TQ QL  + FPLG  KK+ VR LA+ +GL +A K DSQ+ICFV    Y   ++      
Sbjct: 175 LTQTQLEHILFPLGKYKKDEVRKLAQNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEE 234

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
              G+     G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + + 
Sbjct: 235 IKPGEFRDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVF 294

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358
              +    I++  + +  D +    +   KIR +       ++  +DG V+V F+  +  
Sbjct: 295 GDEL----ISYNNNFISIDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRA 350

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           +  GQ+ VFY  D     V+GGG I 
Sbjct: 351 ITPGQSVVFYDGDI----VVGGGTIE 372


>gi|37520120|ref|NP_923497.1| tRNA-specific 2-thiouridylase MnmA [Gloeobacter violaceus PCC 7421]
 gi|73920124|sp|Q7MBC9|MNMA_GLOVI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|35211112|dbj|BAC88492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Gloeobacter violaceus PCC 7421]
          Length = 357

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 216/373 (57%), Gaps = 26/373 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V A+SGGVDSSV AAL+++ GY V GVTL L       + KGSCC+   + DA RVC+
Sbjct: 6   KIVAALSGGVDSSVAAALVRKQGYRVCGVTLWLM------RGKGSCCS-DGMKDAARVCE 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++ H++ D  ++F   ++      Y  G TPLPC  CN+ +KF  LL   R +LG   
Sbjct: 59  QLDIPHHIVDIRQQFEETIVDFLVEGYREGITPLPCSRCNKELKFGLLLEYARRKLGIGT 118

Query: 141 LATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +ATGHY R+    G DG+  R  + R +D  +DQSYFL+  +Q+QL    FPLG+M K+ 
Sbjct: 119 VATGHYART----GFDGQTGRHWLARAVDRTKDQSYFLYDLSQEQLASAVFPLGEMTKDQ 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNG 258
            R LA E+GL +A K +S D+C V+      +   +NA I    G+IV  +G+ILG H+G
Sbjct: 175 TRTLAAELGLSVAHKPESMDLCLVEAAG--SMRNFLNAHIDTRRGEIVDTSGKILGEHDG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             +YT+GQRRGLGVA   PL+VV +D  ++RV+VG RE        + ++NW+     E 
Sbjct: 233 AHHYTVGQRRGLGVAAPYPLYVVAVDAANNRVVVGAREEATACECTVGQVNWVSMAEPEA 292

Query: 319 AVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKS-EVGVASGQACVFYTSDSNEAR 376
            +    +  V++R    PV    +     G  + F+ + +  ++ GQA V+Y  +    R
Sbjct: 293 PI----QAEVQVRYRSQPVQATIIPLPARGARIAFDDAPQFAISPGQAAVWYAGE----R 344

Query: 377 VLGGGIISGSKRS 389
           VLGGGII  S RS
Sbjct: 345 VLGGGIILASGRS 357


>gi|18310765|ref|NP_562699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens str. 13]
 gi|18145446|dbj|BAB81489.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens str. 13]
          Length = 350

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 206/360 (57%), Gaps = 15/360 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV   +++
Sbjct: 1   MSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVAQKLDI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD +ATGH
Sbjct: 61  PFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADYVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y +     G     R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +R++A+
Sbjct: 121 YAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKIREIAK 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+ YTIG
Sbjct: 176 EIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIVYYTIG 235

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325
           QR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++     E  +    +
Sbjct: 236 QRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM----E 291

Query: 326 CFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+GGGII 
Sbjct: 292 VEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVGGGIIE 347


>gi|170755439|ref|YP_001780808.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B1 str.
           Okra]
 gi|205810574|sp|B1IIY2|MNMA2_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|169120651|gb|ACA44487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
          Length = 356

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D  +DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDRKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++IN++      D +
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYIP----FDTL 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            D  +   KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     ++G
Sbjct: 295 KDPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLIG 350

Query: 380 GGIIS 384
           GGII 
Sbjct: 351 GGIIE 355


>gi|160892535|ref|ZP_02073325.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50]
 gi|156865576|gb|EDO59007.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50]
          Length = 362

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/365 (40%), Positives = 204/365 (55%), Gaps = 17/365 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRVC 80
           V V MSGGVDSSV A LLK  GY+VIGVT+Q++    A +    G CC    V DARRV 
Sbjct: 6   VCVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDEDADQISEHGGCCGLSAVDDARRVA 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YV +++E FR  VI  F   Y  G TP PC+ CNR VK+  LL  +  +G D 
Sbjct: 66  AQLEIPYYVMNFKEDFRKYVIDYFVDEYRNGRTPNPCIACNRYVKWESLLRRSLSIGGDY 125

Query: 141 LATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +ATGHY R  +L  G     R  +     +E+DQ+Y L+  TQ QL     P+G+  K  
Sbjct: 126 IATGHYARVEQLSSG-----RYTLRVAKGIEKDQTYALYNLTQDQLSKTLMPVGEYNKTQ 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A ++G+ +A+K DSQDICFV  G Y   ++R     A+ G+ V +NG++LG H GI
Sbjct: 181 IRQIAADIGIQVANKPDSQDICFVPDGDYAGYLEREEGLKAVPGNFVDMNGKVLGTHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+AMG P+FVV +   ++ V++G         +   + N++     E  
Sbjct: 241 IHYTIGQRKGLGLAMGHPVFVVDIIPETNEVVIGENADTFSKELIADKTNFMSVERPE-- 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             DG +   KIR +    P  +   D D V V F++       GQA VFY  D     ++
Sbjct: 299 --DGMQVIGKIRYAHKGAPCRIYMLDADRVRVVFDEPVRAATKGQAVVFYEDD----HIV 352

Query: 379 GGGII 383
           GGG I
Sbjct: 353 GGGTI 357


>gi|225174584|ref|ZP_03728582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169711|gb|EEG78507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 366

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 212/375 (56%), Gaps = 16/375 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKG-SCCAGQDVY 74
           K+ RV+VAMSGGVDSS+ AALLK  GY+ IGVT++L+ S      +K  G  CC+   V 
Sbjct: 3   KNNRVLVAMSGGVDSSLCAALLKEQGYEAIGVTMRLWVSPDFEDEAKHSGRGCCSLSAVD 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DARRV D + +  YV +++E FR  V+  F   Y  G TP PC+ CNR +KF  LL    
Sbjct: 63  DARRVADKMEMPFYVLNFKESFRTQVVDYFVDEYRRGRTPNPCIACNRYLKFDLLLKKAF 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L A  +ATGHY R      D+   R  + +  D  +DQ+Y L+  TQ+QL    FPLG 
Sbjct: 123 ELEAWYVATGHYARVEY---DESLERFRLKKAADARKDQTYTLYNLTQKQLAHTLFPLGG 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K  VR++A + GL +ADK DSQ+ICF+    Y   ++      +  G I+ L+G  LG
Sbjct: 180 FLKSEVREMAAKYGLAVADKPDSQEICFIPDDDYKRFLREETDVESKPGPILDLDGNRLG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G++NYT+GQR+GLG+A+G P+FVV LD  ++ +IVG    +    +   ++N+    
Sbjct: 240 THQGLVNYTVGQRKGLGIAVGRPIFVVELDVENNTLIVGDDRDVFFRALVADDLNF---- 295

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           +  D + +  +   KIR     VP  +     G   ++F++ E  V  GQ+ VFY  D  
Sbjct: 296 ILIDELKEPRRVMAKIRYHAKEVPALLSPLPHGQAKLEFDEPERAVTPGQSVVFYEGDD- 354

Query: 374 EARVLGGGIISGSKR 388
              V+GGGII  + R
Sbjct: 355 ---VVGGGIIQQAIR 366


>gi|283795899|ref|ZP_06345052.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. M62/1]
 gi|291076535|gb|EFE13899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. M62/1]
          Length = 359

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 205/367 (55%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++   +  A +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV ++++ FR  V+  F + Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 65  AEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + +     +DQ+Y L+  TQ+QL     P+G+  K+
Sbjct: 125 YIATGHYARIEKLPNG-----RYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYTKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A+E+ L +A K DSQ+ICF+    Y   ++        EG+ V L G +LGRH G
Sbjct: 180 EIRKMAQELNLRVAHKPDSQEICFIPDNDYAKFIREDIGKELPEGNFVDLQGNVLGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           I +YT+GQR+GL ++MG P+FVV +   ++ V++G    +    +    INW+  DGL  
Sbjct: 240 ITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGLHG 299

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      +   KIR      P  V+    D     F++ +  +  GQA V Y  +     
Sbjct: 300 EE----HRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGEY---- 351

Query: 377 VLGGGII 383
           V GGG I
Sbjct: 352 VAGGGTI 358


>gi|220917573|ref|YP_002492877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955427|gb|ACL65811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 351

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/364 (42%), Positives = 203/364 (55%), Gaps = 13/364 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSS  AALL   G++VIGVT+++ +    ++ + SCCA  DV DAR   
Sbjct: 1   MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSDVARGR-SCCAPDDVEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  YV + E RFR  VI  F   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGAK- 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    V + G RR ++    D  +DQSYFL+   Q  L D+ FP+G + K  V
Sbjct: 119 LATGHYAR----VEERGGRRALLT-AADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +ADK DSQ+ICFV +G   D V          G+IV   G++LGRH+G+ 
Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDFVALRAPARIRAGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV LD  ++RV+VG  E     R  +RE +W+  G      
Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAATARVVVGSAEEASRDRFEVREASWV-SGAPPAGP 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           V+  +  V+ R   +   V       G  V   +   GVA GQA VFY  D     V+GG
Sbjct: 293 VE-LRVKVRHRHEGERGTVRAVSGGAGADVRLARPVRGVAPGQAAVFYAGDE----VVGG 347

Query: 381 GIIS 384
           G I+
Sbjct: 348 GRIA 351


>gi|300868100|ref|ZP_07112736.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506]
 gi|300333898|emb|CBN57914.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506]
          Length = 352

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 214/366 (58%), Gaps = 25/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSS  AA+L   GY+V+G+TL L       K KG CC+ + + DA ++C+
Sbjct: 3   KIVVGLSGGVDSSTAAAILHHQGYEVVGLTLWLM------KGKGQCCS-EGMVDAAQICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H + D  + F+ +++      Y AG TPLPC  CNRTVKF  +L   R+ LG + 
Sbjct: 56  QLGIPHEIVDSRDLFQASIVDYLVEGYGAGITPLPCSQCNRTVKFGPMLRYAREKLGIEK 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCR-PMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +ATGHY +    +  DG   R   R  +D  +DQSYFL+  TQ+ L    FPLGD+ K  
Sbjct: 116 IATGHYAQ----ISYDGSVDRYQLRRAVDSTKDQSYFLYDLTQEMLAGSVFPLGDIAKTE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK++SQD+C V+  G     + +  A   L+GDIV  +G++LG+H+G
Sbjct: 172 TRRIAAEFGLKTADKAESQDLCLVESNGSMRAFLDKYIA--PLKGDIVDKDGRVLGQHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A  EPL+V+ LD   +RVIVG R S   +   +  +NW+   + E 
Sbjct: 230 IQHYTIGQRKGLGIAWAEPLYVIGLDVARNRVIVGDRASAAQNECIVNRVNWV--SIAEP 287

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +  V+IR    PVPV  +   D  V + F++ + G+  GQ  V+Y  D     +
Sbjct: 288 GAP--IRAEVQIRYRSHPVPVSVIPLPDARVKLIFDEPQFGITPGQGAVWYDGDI----L 341

Query: 378 LGGGII 383
           LGGGII
Sbjct: 342 LGGGII 347


>gi|163846255|ref|YP_001634299.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524010|ref|YP_002568480.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus sp. Y-400-fl]
 gi|205811637|sp|A9WFH2|MNMA_CHLAA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811449|sp|B9LK98|MNMA_CHLSY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163667544|gb|ABY33910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus aurantiacus J-10-fl]
 gi|222447889|gb|ACM52155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus sp. Y-400-fl]
          Length = 359

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/363 (42%), Positives = 218/363 (60%), Gaps = 13/363 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSS+ AALL   G+ V GVT+ L++  +   R+  CCA +    ARRVC  
Sbjct: 4   VLVAMSGGVDSSLAAALLLEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAAASARRVCAL 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  YVF+Y+  FR  VI  F  +Y  G TP PCV+CNR +KF  LL   R LG D +A
Sbjct: 64  LGIPFYVFNYQREFRRHVIDYFIRAYTHGLTPNPCVECNRMIKFRALLDRARTLGFDAVA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY  +R+  G+DG+ +  + R +DLE+DQSY L    Q +L  L FP+G   K  VR+
Sbjct: 124 TGHY--ARIIQGEDGRYQ--LWRAVDLEKDQSYMLHMLGQAELSRLIFPIGAYTKREVRE 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL  AD+ +SQDICFV  G Y ++++  +    + G IV L G+ +GRH G+  Y
Sbjct: 180 MAAARGLPSADREESQDICFVPDGDYRNLLRIESPESLVPGPIVDLEGREIGRHRGLPLY 239

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQRRGLG+  GEP +VV +D   + +IVGP  +L   R  + +  W+ D        +
Sbjct: 240 TVGQRRGLGLGGGEPRYVVAIDPARNALIVGPAAALNRARFTVIDACWVDDA----PPAE 295

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            F C V++R+  +P+P  V +  DG + V+ E+ +  V+ GQA VFY       +VLGGG
Sbjct: 296 SFTCLVQVRAHAEPLPARVSQQPDGRWLVELERPQRAVSPGQAAVFYRGQ----QVLGGG 351

Query: 382 IIS 384
            I+
Sbjct: 352 WIA 354


>gi|20808819|ref|NP_623990.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Thermoanaerobacter tengcongensis MB4]
 gi|24638308|sp|Q8R7F0|MNMA2_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|20517470|gb|AAM25594.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Thermoanaerobacter tengcongensis MB4]
          Length = 364

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 216/369 (58%), Gaps = 14/369 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K+ RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +  +A + +G CC+   V DA
Sbjct: 3   KNNRVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     +
Sbjct: 63  RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  K
Sbjct: 123 DAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG H
Sbjct: 180 KDKVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +    I++  + + 
Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL----ISYNNNFIS 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D    
Sbjct: 296 IDKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI--- 352

Query: 376 RVLGGGIIS 384
            V+GGGII 
Sbjct: 353 -VVGGGIIE 360


>gi|291459813|ref|ZP_06599203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417603|gb|EFE91322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 363

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 205/366 (56%), Gaps = 14/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80
           + +VAMSGGVDSSV AAL+K  GYD IGVT++LY        R GSCC  +D  DAR+  
Sbjct: 4   KALVAMSGGVDSSVAAALMKERGYDCIGVTMKLYEKEGGGTCRVGSCCTAEDAEDARQAA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YVF++   F   VI  FA +Y  G TP PC+DCNR +K   L    R+LG D 
Sbjct: 64  SVLGIPYYVFNFTGDFEREVIRRFAETYLKGGTPNPCIDCNRYMKHRRLYQRARELGFDS 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY R      D G+ R ++ +  +  +DQSY L+  +Q+QL    FPLGD + KE 
Sbjct: 124 IATGHYARVSF---DAGRGRWLLKKARNAAKDQSYVLYFLSQEQLSHSVFPLGDFETKEE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR+LA ++    A K DSQDICFV +G Y D ++         G+ V   G+ILGRH GI
Sbjct: 181 VRELAEKLHFLNARKRDSQDICFVTEGDYGDFLESYLGRSFPPGNFVDEEGRILGRHRGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+++  P++V   D   + V +   E L    +   + NW+   L++ +
Sbjct: 241 VRYTIGQRKGLGLSLEAPMYVYEKDLLKNEVYLTRGEKLYQKELIADDFNWI---LYDPS 297

Query: 320 VVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + G      K R     VP   +   DG V V F++ E   A GQA V Y  ++    V
Sbjct: 298 EIKGAIPVTAKSRYRAKEVPAEAELLPDGRVRVRFQEPERAPAIGQAIVLYEGEN----V 353

Query: 378 LGGGII 383
           +GGG I
Sbjct: 354 VGGGTI 359


>gi|225388352|ref|ZP_03758076.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme
           DSM 15981]
 gi|225045595|gb|EEG55841.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 209/366 (57%), Gaps = 18/366 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRVC 80
           VVV MSGGVDSSV A LLK+ GY VIGVT+Q++        + +G CC    V DARRV 
Sbjct: 8   VVVGMSGGVDSSVAAYLLKQQGYRVIGVTMQIWQDEDGDVQEEQGGCCGLSAVDDARRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YV ++++ FR  V+  FA  Y  G TP PC+ CNR VK+  LL  +  +GAD 
Sbjct: 68  MQLEIPYYVMNFKQEFREHVMDYFAGEYLEGRTPNPCIACNRYVKWESLLRRSIAIGADY 127

Query: 141 LATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +ATGHY R  RL  G     R  + R +   +DQ+Y L+  TQ+QL     P+G   K+ 
Sbjct: 128 IATGHYARIERLENG-----RFALRRSVTEAKDQTYALYNLTQEQLSRTLMPVGSYHKDE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A E+GL++A K DSQ+ICFV    Y   ++        EG+ V L+G +LGRH GI
Sbjct: 183 IRRMAEEIGLNVAHKPDSQEICFVPDKDYASFIEDYTGKSCPEGNFVDLHGNVLGRHKGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318
            +YT+GQR+GL ++MG P+FVV +  +++ V++G  E +  + +   ++NW+  DGL   
Sbjct: 243 SHYTVGQRKGLNLSMGRPVFVVEIRPDTNEVVIGEGEDVFTNILRCSKLNWMAVDGLHGG 302

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S       ++   +D V   F++    V  GQA VFYT D     V
Sbjct: 303 RL----RVDAKIRYSHRGAACTIREIGEDLVECVFDEPVRAVTPGQAVVFYTGDY----V 354

Query: 378 LGGGII 383
            GGG I
Sbjct: 355 AGGGTI 360


>gi|269926148|ref|YP_003322771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789808|gb|ACZ41949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 355

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 204/362 (56%), Gaps = 17/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRVC 80
           VVVAMSGGVDSSV AA+L+  GYDVIGV L+LY+    +A      CC    + DA  VC
Sbjct: 4   VVVAMSGGVDSSVAAAMLRDQGYDVIGVNLRLYSKEDSQAYSLNKQCCTLDSMRDAEAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  Y  + E  F   V+  F S Y  G+TP PC+ CN  +KF  L      LGAD 
Sbjct: 64  RKLGIPFYALNMEREFTRDVVDYFVSEYLQGKTPNPCLACNAHIKFHHLFERAMALGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +RL   + G +   +   +D  +DQSY L+  +Q++L     P+G+  K   
Sbjct: 124 IATGHY--ARLRRTESGVK---LLTGVDAAKDQSYTLYMLSQRELERTLLPIGEQTKAET 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+LAR+ GL  A+K +SQDICF+  G Y   V+R+       G IV  +G+ LG H+G+ 
Sbjct: 179 RELARKYGLVTANKPESQDICFIPSGDYRAFVRRLAPHAESPGPIVDTSGRQLGVHHGVA 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+ +G+P++VV LD   + V+VG +E L    I L ++N++ DG      
Sbjct: 239 FYTIGQRKGLGITVGKPMYVVRLDPEKNMVVVGTKEELSSREIRLCDVNYI-DG---SPR 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            + F+C VK+R     +P  V   DD  V V+       VA GQA VFY  +     VLG
Sbjct: 295 TEAFECEVKLRYRGASIPAIVHPEDDRSVRVEL-LGPGNVAPGQAVVFYQGEE----VLG 349

Query: 380 GG 381
           GG
Sbjct: 350 GG 351


>gi|255283411|ref|ZP_05347966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bryantella formatexigens DSM 14469]
 gi|255266059|gb|EET59264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bryantella formatexigens DSM 14469]
          Length = 357

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 205/366 (56%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDV+GVT+Q++   +   +   G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAWLLKEQGYDVVGVTMQIWQDEEEQTQEENGGCCGLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T+ + +YV +++  F+  V+  FA  Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AQTLEIPYYVMNFKAEFKEKVMDYFAQEYLCGRTPNPCIACNRYVKWEALLQRSLAIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  +CR     +DQ+Y L+  TQ+QL     P+G+  KE 
Sbjct: 124 YIATGHYARIRQLPGG----RYTICRSATAAKDQTYALYNLTQEQLAHTLMPVGEYTKEE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A ++GL +A+K DSQ+ICFV    Y   ++         G+ V  +G +LG+H GI
Sbjct: 180 IRGIAEKIGLRVANKPDSQEICFVPDDDYASFIEEYTGREMPAGNFVTADGTVLGQHRGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGL + MG  +FV  +   ++ V++G  E L   R+   ++N++        
Sbjct: 240 THYTIGQRRGLQLPMGHRVFVTDIRPETNEVVIGENEELFKRRLLANKLNFM-----SVP 294

Query: 320 VVDG-FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +DG  +   KIR +    P  ++    D V   F++ +  +  GQA VFY  ++    V
Sbjct: 295 EIDGDTRVTAKIRYNHRGAPATIRMAGPDMVECIFDEPQRAMTPGQAVVFYDGEN----V 350

Query: 378 LGGGII 383
           LGGG I
Sbjct: 351 LGGGTI 356


>gi|218248292|ref|YP_002373663.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8801]
 gi|226704769|sp|B7K1G5|MNMA_CYAP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218168770|gb|ACK67507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 8801]
          Length = 349

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/366 (40%), Positives = 208/366 (56%), Gaps = 25/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GY+VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H++ D  + F+  ++    S Y AG TPLPC  CNR VKF  +L+  RQ LG D 
Sbjct: 56  QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLNYARQELGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+  +R  + R +D  +DQSYFL+  +Q+ L    FPLGD  KE  
Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258
           R +A E  L  A K +SQD+C ++          + I+     EGDIV L G++LG+H G
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYIHQK---EGDIVDLEGKVLGKHQG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLGVA  EPL+VV LD   ++VIV  R +       +  +NW+       
Sbjct: 230 IHHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSDCTVTRLNWVSIA---- 285

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A     +   +IR     VPV  +   D+ V + F++ E G+  GQA VFY  +     +
Sbjct: 286 APSTPIRVETQIRYRSSAVPVDLIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----L 341

Query: 378 LGGGII 383
           LGGGII
Sbjct: 342 LGGGII 347


>gi|291527010|emb|CBK92596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale M104/1]
          Length = 362

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K+  +G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV +++  F+  VI  F S Y    TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 64  AAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +      R  +   +  E+DQ+Y L+  TQ+QL     P+G+ +K  
Sbjct: 124 YIATGHYAR----IAQLPNGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEKPQ 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A E GL +A KSDSQDICFV    Y   ++         G+ V  +G ILGRH G+
Sbjct: 180 IRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHKGL 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+    PLFV  L   ++ V++   ESL     Y+ +IN++     +D 
Sbjct: 240 IHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----QDH 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   K+R S       +   ++G +   F++ +  +  GQA VFY     +  VL
Sbjct: 296 ITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFY----QDGHVL 351

Query: 379 GGGII 383
            GG I
Sbjct: 352 CGGTI 356


>gi|295091002|emb|CBK77109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cf. saccharolyticum K10]
          Length = 359

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 205/367 (55%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++   +  A +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV ++++ FR  V+  F + Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 65  AEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + +     +DQ+Y L+  TQ+QL     P+G+  K+
Sbjct: 125 YIATGHYARIEKLPNG-----RYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYTKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A+E+ L +A K DSQ+ICF+    Y   ++        EG+ V L G +LGRH G
Sbjct: 180 EIRKMAQELNLRVAHKPDSQEICFIPDNDYARFIREDIGKELPEGNFVDLQGNVLGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           I +YT+GQR+GL ++MG P+FVV +   ++ V++G    +    +    INW+  DGL  
Sbjct: 240 ITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGLHG 299

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      +   KIR      P  V+    D     F++ +  +  GQA V Y  +     
Sbjct: 300 EE----HRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGEY---- 351

Query: 377 VLGGGII 383
           V GGG I
Sbjct: 352 VAGGGTI 358


>gi|288818711|ref|YP_003433059.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788111|dbj|BAI69858.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752298|gb|ADO45781.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Hydrogenobacter thermophilus TK-6]
          Length = 354

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 209/368 (56%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV V MSGGVDSSV A LLK  G++VIGVTL+ +   ++        CC+ +DV DA +
Sbjct: 1   MRVAVGMSGGVDSSVSALLLKMAGHEVIGVTLRFHTIPESCSTDDLRVCCSPEDVKDAAK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
           V + + + H  FD+E  F+  VI  F   YA G+TP PC  CNR VK   L    R++  
Sbjct: 61  VSEKLGIPHITFDWERIFKERVIDYFVQEYAEGKTPNPCAICNRDVKTGFLARYLREVAQ 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LATGHY R   Y G     +R++ R  D  +DQSYFL    ++ L  L FPLGD+ K
Sbjct: 121 VDRLATGHYARLVEYKG-----KRLIARAKDKSKDQSYFLALVRKKDLELLEFPLGDLTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR +A E  L +A K DSQ++CF+   K  + +K    G A  G I H++G++LG H 
Sbjct: 176 EQVRRIAVEYSLPVAQKRDSQEVCFLMGKKPGEFIKE-RVGEA-SGYIKHVSGRVLGTHT 233

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI N+TIGQRRGLGV+  EPL+VV +D  ++ VIVG  E +    + L++IN+    L  
Sbjct: 234 GIYNFTIGQRRGLGVSYHEPLYVVDIDAQTNTVIVGSEELIYKSSLKLKDINF---HLHI 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D    G   +  +R     V V  ++   DG  V+FE    G+  GQ C FY  D     
Sbjct: 291 DKW--GKDVYAVVRYRTQAVKVKDIKETKDGFVVEFETPVRGITPGQVCAFYEGDV---- 344

Query: 377 VLGGGIIS 384
           +LGGGII+
Sbjct: 345 LLGGGIIA 352


>gi|307243659|ref|ZP_07525800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492969|gb|EFM64981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 350

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 214/364 (58%), Gaps = 17/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++ MSGGVDSSV A LL+++GY+V+G T+ L++ +  +K          + DAR VC+
Sbjct: 3   RVLLGMSGGVDSSVAAFLLQKEGYEVVGATMALWDFKDGNK-------DTSIEDARVVCN 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H+V D+ E F++ V+  F   Y AG+TP PCV CN+T+KF  L    R+LG D +
Sbjct: 56  KLKIDHHVLDFREDFKDLVVDNFIDEYFAGKTPNPCVFCNKTIKFGLLFDKARELGCDYV 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  + +   +   +  I     D  +DQ+Y L+   Q++L    FP+G   K+++R
Sbjct: 116 ATGHY--ALVDFNEKSGKYEIKKASSD-SKDQTYVLYNLNQEKLARTLFPIGKYDKDTIR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           D+A+E+GL++ +K DSQDICF+    Y   +K  +      G+ V  +G++LGRH GII+
Sbjct: 173 DMAKEIGLEVHNKPDSQDICFIPDHDYEAFLKENSKKKVEVGNFVDRSGKVLGRHKGIIS 232

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+  G+P +VV ++     +++G  + L    +  R++N++     +D VV
Sbjct: 233 YTIGQRKGLGITFGKPTYVVAINGQDKSIVLGDNDDLFKTSLTARDVNFV--EWSQDEVV 290

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                + K+R +  P    V       V VDF + +  + SGQ+ VFY+ D    R+LGG
Sbjct: 291 GPIDVYAKVRYAAKPAQAKVTYIGKYRVRVDFVEPQRAITSGQSVVFYSED----RLLGG 346

Query: 381 GIIS 384
           GII 
Sbjct: 347 GIIE 350


>gi|205829096|sp|B1XM11|MNMA_SYNP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 353

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 203/366 (55%), Gaps = 25/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V +SGGVDSSV A +L R GY V GVTL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVAVGLSGGVDSSVTAGILHRQGYTVEGVTLWLM------KGKGQCCS-EGMVDAADICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + + H++ D  + F+  ++    S Y  G TPLPC  CNR VKF  +L   + +LG D 
Sbjct: 56  QLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRMVKFGPMLQWAKAELGIDQ 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    +D   R  + R +D  +DQSYFL+  TQ+ L    FPLG+M K   
Sbjct: 116 IATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDLTQEMLAGTLFPLGEMTKGET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258
           R +A EM L  A K +SQD+C ++          K I      EG+IV L+G++LG H G
Sbjct: 173 RQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ---REGEIVDLDGKVLGHHTG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A  EPL+VV LD   +RV+V  R+        ++ +NWL       
Sbjct: 230 IHHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRAGQSECTVQRMNWLA----LP 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +  V++R     VPV V     D + + FE+ + G+  GQA V Y  D    RV
Sbjct: 286 GITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQFGITPGQAAVLYDGD----RV 341

Query: 378 LGGGII 383
           LGGGII
Sbjct: 342 LGGGII 347


>gi|291531960|emb|CBK97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum 70/3]
          Length = 358

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 206/363 (56%), Gaps = 13/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N      R+ SCC+  DV D R V 
Sbjct: 4   KAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVDDVRSVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++++ +YVF++ +RF   VI  F  +Y  G TP PC+DCNR +KF  L    ++L  D 
Sbjct: 64  YSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDRDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R    V  DG  R ++ + +D  +DQSY L+  TQ+QL    FPLG M+K   
Sbjct: 124 VVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGKMRKSQA 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   G   A K+DSQDICFVQ G Y D +++       +GD +  NG ++GRH G+I
Sbjct: 180 REIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKGVI 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG++  EPL+V  ++  S+ V +   + L    +   +IN +        +
Sbjct: 240 RYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDGLYSSIVKAGDINLIS----VPEI 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +   K+R         V +N + +   F++ +  V  GQA V Y  D+    V+GG
Sbjct: 296 KGEMRVKAKVRYRHTEQWATVTQNGETLTAVFDEPQRAVTCGQALVLYDGDT----VVGG 351

Query: 381 GII 383
           G I
Sbjct: 352 GTI 354


>gi|289578840|ref|YP_003477467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter italicus Ab9]
 gi|289528553|gb|ADD02905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter italicus Ab9]
          Length = 364

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 216/369 (58%), Gaps = 14/369 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K+ RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +  +A + +G CC+   V DA
Sbjct: 3   KNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLSAVNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     +
Sbjct: 63  RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  K
Sbjct: 123 EAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR LA+++GL +A K DSQ+ICFV    Y   ++         G+     G+ LG H
Sbjct: 180 KDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +    I++  + + 
Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL----ISYNNNFIS 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D    
Sbjct: 296 IDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGKVFVKFDSPQRAITPGQSVVFYDGDI--- 352

Query: 376 RVLGGGIIS 384
            V+GGGII 
Sbjct: 353 -VVGGGIIE 360


>gi|148379169|ref|YP_001253710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931319|ref|YP_001383546.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936775|ref|YP_001387095.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str.
           Hall]
 gi|205810260|sp|A7FT69|MNMA1_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|205810283|sp|A5I123|MNMA1_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|148288653|emb|CAL82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927363|gb|ABS32863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932689|gb|ABS38188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
          Length = 356

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 212/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAIGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L   ++  ++ N++  D L E  
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTKLIAKDTNYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|75910268|ref|YP_324564.1| tRNA-specific 2-thiouridylase MnmA [Anabaena variabilis ATCC 29413]
 gi|123608374|sp|Q3M5R7|MNMA_ANAVT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|75703993|gb|ABA23669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anabaena variabilis ATCC 29413]
          Length = 352

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/364 (40%), Positives = 210/364 (57%), Gaps = 21/364 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCS-EGMIDAAYICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + + H V D  + F+  ++    + Y AG TPLPC  CN+TVKF  ++   R QLG D 
Sbjct: 56  QLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYAREQLGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+M+K   
Sbjct: 116 IATGHYARISY---DEASGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKADT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E GL  ADK +SQD+C V+          ++  IA + GDIV   G+ILG+H+G+
Sbjct: 173 RRIATEHGLKTADKPESQDLCLVESNGSMRAF--LDKYIAPKKGDIVDTAGKILGQHDGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+VV LD  +++V+VG R         +  +NW+   + E +
Sbjct: 231 HHYTIGQRKGLGIAAPEPLYVVELDAVNNKVVVGDRTKATQEECTVSRVNWV--SIPEPS 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                   ++ RS+ +PV V    N   V + F++ +  +  GQA V+Y  D    +VLG
Sbjct: 289 TPIRAAVQIRYRSAPEPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWYDGD----KVLG 343

Query: 380 GGII 383
           GGII
Sbjct: 344 GGII 347


>gi|315652097|ref|ZP_07905095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315485589|gb|EFU75973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 363

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 205/366 (56%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDV GVT+Q++ S       GS  CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +YV ++ + F++ VI  F + Y    TP PC+ CNR VK+  LL  +  LGAD
Sbjct: 65  ARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMMLGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  +       +DQ+Y L+  TQ QL     P+GD +K+
Sbjct: 125 YIATGHYARIEKLENG-----RYALRTSKTSAKDQTYALYNLTQDQLSRTLMPVGDYEKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A++  L +A+K DSQ+ICFV    Y   V+        EG+ V  +G+ILG+H G
Sbjct: 180 EIREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPEGNFVTADGEILGKHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I++YTIGQR+GLG+A+G P+FV  +  +++ V++G  E +  + +    +N +    F  
Sbjct: 240 ILHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLNAMAVEKF-- 297

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              DG +   KIR S       ++   +D + +DF+K    +  GQA V Y        V
Sbjct: 298 --FDGMRAVGKIRYSHKGEHCSIKVIGEDRIRIDFDKKVRAITPGQAVVLY---DESGLV 352

Query: 378 LGGGII 383
           LGGG I
Sbjct: 353 LGGGTI 358


>gi|291547860|emb|CBL20968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus sp. SR1/5]
          Length = 362

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 205/365 (56%), Gaps = 13/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80
           +V++AMSGGVDSSV A L K  G + IG T++LYN+      R+ +CC+  DV DAR V 
Sbjct: 3   KVIIAMSGGVDSSVAALLTKESGDECIGATMKLYNNEDIGVHREKTCCSLDDVEDARSVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++ +YVF++   F   V+  F  +Y  G TP PC+DCNR +KF  +    +++G D 
Sbjct: 63  YQMDMPYYVFNFTADFHTEVMDRFVDAYENGCTPNPCIDCNRYLKFDKMFHRMQEIGYDY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R      D+ + R ++ + +D  +DQSY L+  TQ+QL  ++ PLG ++K+ V
Sbjct: 123 IVTGHYARVEY---DEKRDRYLLKKAVDDTKDQSYVLYMLTQEQLAHVKLPLGGLRKDQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + G   A K DSQDICFV  G Y   +++       EGD V   G  +GRH GII
Sbjct: 180 RVIAEKHGFINARKHDSQDICFVPDGDYAKFIEKYTGKKTPEGDFVDKEGNYIGRHKGII 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGLG+     L+V  +   ++ V++G  E L    +    +N +      D++
Sbjct: 240 HYTIGQRRGLGIPAASRLYVCEISPKTNTVVLGDNEDLFSSELEADNVNLIS----VDSL 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   KIR      P    +  DG+ +V F++ +  +  GQA V Y  D     V+G
Sbjct: 296 TEPKRVTAKIRYRHKEQPATAWQTPDGILHVKFDEPQRAITKGQAVVMYDGDE----VVG 351

Query: 380 GGIIS 384
           GG+I+
Sbjct: 352 GGVIN 356


>gi|260588149|ref|ZP_05854062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blautia hansenii DSM 20583]
 gi|260541676|gb|EEX22245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blautia hansenii DSM 20583]
          Length = 361

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 210/369 (56%), Gaps = 17/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++     +  +  G CC    V DARRV
Sbjct: 5   KVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV ++ + F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  AQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G    R  +  +     +DQ+Y L+  TQ+QL     P+G+  KE
Sbjct: 125 YIATGHYARVEQLPNGRYAIRNSVTAK-----KDQTYALYNLTQEQLSRTLMPVGEYTKE 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A+E GL +A K DSQ+ICFV    Y   ++        EG+ V  +G ++G+H G
Sbjct: 180 EIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YTIGQR+GL ++MG P+FV  +  +++ V++G  E L V  +    +N++      D
Sbjct: 240 IIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAI----D 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +G +   KIR +       ++   +G V V F +S+  V  GQA VFY  +     V
Sbjct: 296 HLEEGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFRESQRAVTPGQAVVFYDGEY----V 351

Query: 378 LGGGIISGS 386
            GGGII G 
Sbjct: 352 AGGGIILGK 360


>gi|262066104|ref|ZP_06025716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380199|gb|EFE87717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 362

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 212/387 (54%), Gaps = 38/387 (9%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           V SE ++   ++ D N K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    + 
Sbjct: 7   VASEFSKY--IEFDSNKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS- 63

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                        DA++VCD + + HYV D  + F+  V+  F + Y  G TP PC+ CN
Sbjct: 64  -------------DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCN 110

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           R +KF  +L      GA  +ATGHY + +   L VGDD              +DQ YFL 
Sbjct: 111 RHIKFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLS 158

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
              + +L  + FP+GD++K  +R+LA+++G+ +  K DSQ+ICFV  GK  + +     G
Sbjct: 159 QIQKDRLSKIIFPVGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKG 218

Query: 239 IALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
            A + G+IV  NG ILG+H G   YTIGQR+GLG++  EPL+V+  DK+++ +IVG  E 
Sbjct: 219 KAQKPGNIVDKNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENED 278

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           L    +    +N       E   +D  +CF K RS        +++N D   V F  ++V
Sbjct: 279 LFKDELTATRLNLFSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKV 336

Query: 358 -GVASGQACVFYTSDSNEARVLGGGII 383
             +  GQ  VFY +D N   V+ GG I
Sbjct: 337 RAITPGQGIVFYNNDGN---VIAGGFI 360


>gi|322805504|emb|CBZ03068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 356

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++  D L E  
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|153938615|ref|YP_001390533.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum F str.
           Langeland]
 gi|205810312|sp|A7GCM3|MNMA1_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|152934511|gb|ABS40009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|295318614|gb|ADF98991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. 230613]
          Length = 356

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGSILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++  D L E  
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|237794471|ref|YP_002862023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
 gi|229260617|gb|ACQ51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
          Length = 356

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY   + +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYAIIKKH-----NDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++  D L E  
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   DDG V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|238922734|ref|YP_002936247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale ATCC 33656]
 gi|238874406|gb|ACR74113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale ATCC 33656]
          Length = 362

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 203/365 (55%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K+  +G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV +++  F+  VI  F S Y    TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 64  AAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +      R  +   +  E+DQ+Y L+  TQ+QL     P+G+ +K  
Sbjct: 124 YIATGHYAR----IAQLPNGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEKPQ 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A E GL +A KSDSQDICFV    Y   ++         G+ V  +G ILGRH G+
Sbjct: 180 IRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHKGL 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+    PLFV  L   ++ V++   ESL     Y+ +IN++     ++ 
Sbjct: 240 IHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----QEH 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   K+R S       +   ++G +   F++ +  +  GQA VFY     +  VL
Sbjct: 296 ITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFY----QDGHVL 351

Query: 379 GGGII 383
            GG I
Sbjct: 352 CGGTI 356


>gi|218133009|ref|ZP_03461813.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991882|gb|EEC57886.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC
           43243]
          Length = 375

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 20/372 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           RVVV MSGGVDSSV A LLK  GYDVIGVT+Q++    +   +  G CC    V DARRV
Sbjct: 16  RVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQDEDSCSMEENGGCCGWSAVEDARRV 75

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV +++  FR  VI  F + Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 76  AQQLDIPYYVMNFKNEFRENVIEYFVNEYKNGRTPNPCIACNRYVKWESLLKRSMEIGAD 135

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +      R ++   +   +DQ+Y L+  TQ+QL     P+G+  KE 
Sbjct: 136 YIATGHYAR----IEQLSNGRYVVRNSVTAAKDQTYALYNLTQEQLRHTLMPIGEYDKEH 191

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-----AGIALEGDIVHLNGQILG 254
           +R +A + GL +A+K DSQDICFV  G Y   +   +     +   + G+ V+L G+++G
Sbjct: 192 IRQIAAQRGLMVANKPDSQDICFVPDGDYAGFIMNSDYAQSCSKACVPGNFVNLAGEVIG 251

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH G ++YTIGQR+GLG+AMG P+FVV +   ++ V++G        R+    +N++   
Sbjct: 252 RHKGYLHYTIGQRKGLGLAMGHPVFVVDIRPETNEVVIGDNSDCFSDRLVADRLNFMA-- 309

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              D + +      +IR S       V+  +DD +   F++ +  V  GQA V Y     
Sbjct: 310 --VDRLTEPKHLMARIRYSHKGGECTVRMIDDDRIECVFDEPQRAVTKGQAVVLY----E 363

Query: 374 EARVLGGGIISG 385
           +  V GGG I G
Sbjct: 364 DGHVFGGGTIIG 375


>gi|168178604|ref|ZP_02613268.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226948452|ref|YP_002803543.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670342|gb|EDT82316.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226842334|gb|ACO85000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 356

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 210/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++  D L E  
Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +    DD V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDDRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|167036708|ref|YP_001664286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115132|ref|YP_004185291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855542|gb|ABY93950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928223|gb|ADV78908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 376

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 217/393 (55%), Gaps = 43/393 (10%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65
           RL +  + KN    RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +  +A + +G
Sbjct: 7   RLENFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +K
Sbjct: 64  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL
Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FPLG  KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+ 
Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
               G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G            
Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG------------ 288

Query: 306 REINWLGDGLFEDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVD 351
                 GD +F D ++     F+             KIR +       ++  +DG V+V 
Sbjct: 289 -----YGDEVFGDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVK 343

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F+  +  +  GQ+ VFY  D     V+GGG I 
Sbjct: 344 FDNPQRAITPGQSVVFYEGDI----VVGGGTIE 372


>gi|167745698|ref|ZP_02417825.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662]
 gi|167655010|gb|EDR99139.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662]
          Length = 356

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 205/366 (56%), Gaps = 18/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++   +       G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + R    E+DQ+Y L+  TQ QL     P+G+  K+
Sbjct: 124 YIATGHYARIEKLSNG-----RYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A ++ L +A K DSQDICFV  G Y D ++         G+ V ++G ILG H G
Sbjct: 179 EIREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YT+GQRRGLG+++ +P +VV +DK  + V++G  E L    +Y   +N +     E 
Sbjct: 238 IVCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIE- 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              DG +   K+R +    P  V  +  D + V F++ +  V  GQA VFY  D     V
Sbjct: 297 ---DGMRFQAKVRYNHRGAPCTVSMDGKDRIKVLFDEPQRAVTPGQAVVFYDGDY----V 349

Query: 378 LGGGII 383
            GG  I
Sbjct: 350 AGGATI 355


>gi|225376291|ref|ZP_03753512.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM
           16841]
 gi|225211937|gb|EEG94291.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM
           16841]
          Length = 358

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 206/367 (56%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        ++ G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQDEDEFTQEKNGGCCGLSAVNDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV ++++ F+  V+  F + Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  ADRLEIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLDRSLAIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    V      R  +   +  E+DQ+Y L+  TQ QL     P+GD  K+ 
Sbjct: 124 YIATGHYAR----VEQLPNGRYAIKNSVTAEKDQTYALYNLTQTQLSRTLMPVGDYHKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNG 258
           +R +A E+GL +A K DS +ICF+    Y   + K     +   G+ V  +G+ILGRH G
Sbjct: 180 IRQIAEEIGLMVAHKKDSMEICFIPDDDYAGFIDKECGKLVPPPGNFVSTDGKILGRHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YT+GQR+GLG+A+G P+FV  +   ++ V++G  E +    +Y   +N++      D
Sbjct: 240 ITHYTVGQRKGLGIALGYPVFVTEIRPETNEVVLGSNEDVFTTELYADHVNFMS---LPD 296

Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +DG  +   KIR S       V R  +D ++  FE+    V  GQA V Y  D     
Sbjct: 297 --IDGEMELKAKIRYSHSGSMCKVTRTGEDQIHCVFEEPVRAVTPGQAVVLYDGD----Y 350

Query: 377 VLGGGII 383
           + GGG+I
Sbjct: 351 IAGGGVI 357


>gi|160940314|ref|ZP_02087659.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436894|gb|EDP14661.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC
           BAA-613]
          Length = 351

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 18/362 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDSSV A LLK  GYDVIGVT+Q++     +  + +G CC    V DARRV   + 
Sbjct: 1   MSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTEVQEAEGGCCGLSAVDDARRVAMDLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + +YV +++E FR  V+  F   Y  G TP PC+ CNR VK+  LL  +  +GAD +ATG
Sbjct: 61  IPYYVMNFKEEFRKNVMDYFVGEYVEGRTPNPCIACNRHVKWESLLRRSMAIGADYIATG 120

Query: 145 HYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           HY +  RL  G     R  +   +   +DQ+Y L+  TQ+QL     P+G   KE +RD+
Sbjct: 121 HYAQIDRLPGG-----RYSLKTSVTAAKDQTYALYNLTQEQLSHTLMPVGSYHKEEIRDM 175

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+ +GL +A K DSQ+ICF+    Y   ++         G+ V L+G++LGRH GI +YT
Sbjct: 176 AKRLGLPVAHKPDSQEICFIPDHDYASFIEEYTGRELPPGNFVDLDGRVLGRHRGITHYT 235

Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDAVVD 322
           +GQR+GL ++MG P+FVV +   ++ V++G  E +  + +   ++NW+  DGL    +  
Sbjct: 236 VGQRKGLNLSMGRPVFVVEIRPETNEVVIGNNEDVFTNVLRCDKLNWMAVDGLHGKPM-- 293

Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                 KIR S    P  ++   DD V   F +    V  GQA VFY  D     V GGG
Sbjct: 294 --DVMAKIRYSHRGSPCTIREIGDDMVECCFHEPVRAVTPGQAVVFYDGDY----VAGGG 347

Query: 382 II 383
            I
Sbjct: 348 TI 349


>gi|186685498|ref|YP_001868694.1| tRNA-specific 2-thiouridylase MnmA [Nostoc punctiforme PCC 73102]
 gi|205816898|sp|B2J5L9|MNMA_NOSP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|186467950|gb|ACC83751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nostoc punctiforme PCC 73102]
          Length = 351

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 211/364 (57%), Gaps = 21/364 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCS-EGMIDAADLCE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H + D  + F+  ++    + Y+AG TPLPC  CN+TVKF  ++   R+ LG D 
Sbjct: 56  QLGVPHQIVDIRDLFQTHIVDYLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREELGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+++K   
Sbjct: 116 IATGHYARISY---DEATGRYQLLRAIDRNKDQSYFLYDLSQDLLAATIFPLGELEKTDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E GL  ADK +SQD+C V+  G     + +  A     GDIV   G+ILG+H+G+
Sbjct: 173 RRIATEYGLKTADKPESQDLCLVESNGSMRAFLDKYLA--PKSGDIVDTTGKILGQHDGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+V+ LD  +++V+VG R  +      +  +NW+   + E +
Sbjct: 231 HHYTIGQRKGLGIAAAEPLYVIELDAENNKVVVGDRTKVTQPECTVNRVNWV--SIAEPS 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +  ++ RS+  PV V    N   V + F++ +  +  GQA V+Y  +    +VLG
Sbjct: 289 TPIHAEVQIRYRSTPTPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWYDGE----KVLG 343

Query: 380 GGII 383
           GGII
Sbjct: 344 GGII 347


>gi|325290391|ref|YP_004266572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965792|gb|ADY56571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 352

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 205/364 (56%), Gaps = 17/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V VAMSGGVDSSV A LLKR+GYDV+GVT+Q++   +   ++ +CC+   V DARRV  
Sbjct: 3   KVFVAMSGGVDSSVAALLLKREGYDVVGVTMQIWP--QPEDKEKACCSLDAVNDARRVAW 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV ++ + F   VI  F   Y AG TP PC+ CNR +KF   L     +GAD +
Sbjct: 61  KLGIPHYVLNFRDDFEEKVIRYFCREYLAGRTPNPCIACNRYLKFDLFLQKALAMGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY R R    ++   R  + + +D  +DQSY L+   Q QL    FPLG  KKE  R
Sbjct: 121 STGHYARIRR---NEQTERYELRKGLDQTKDQSYALYNLQQDQLQHTLFPLGTYKKEETR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA+E GL +A K DSQ+ICFV       + + + + +   G  V  +G ++G H GI  
Sbjct: 178 KLAQEGGLPVAFKKDSQEICFVDHSHAQFIEEYLQSPLT-PGKFVDADGSVVGIHQGIYR 236

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFEDAV 320
           YTIGQ +GLG+AMG P++V  ++  S+ V VG  E L    +   ++N++ G+G      
Sbjct: 237 YTIGQHKGLGLAMGYPVYVTKIEPESNTVRVGKMEELFQDALLAEDLNFVSGEG-----P 291

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K  VKIR +   VP  +    +G + V FE  +  +  GQA VFY  D     VLG
Sbjct: 292 TGPMKVQVKIRYNAQAVPAVIHPRAEGKMKVVFEIPQKSITPGQAVVFYDHDI----VLG 347

Query: 380 GGII 383
           GG I
Sbjct: 348 GGTI 351


>gi|205815324|sp|B0KC14|MNMA1_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
          Length = 364

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 213/382 (55%), Gaps = 40/382 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +  +A + +G CC+   V DA
Sbjct: 3   KNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     +
Sbjct: 63  RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWMI 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  K
Sbjct: 123 DAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG H
Sbjct: 180 KDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G                  GD +F
Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG-----------------YGDEVF 282

Query: 317 EDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
            D ++     F+             KIR +       ++  +DG V+V F+  +  +  G
Sbjct: 283 GDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPG 342

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  D     V+GGG I 
Sbjct: 343 QSVVFYEGDI----VVGGGTIE 360


>gi|320160878|ref|YP_004174102.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerolinea thermophila UNI-1]
 gi|319994731|dbj|BAJ63502.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerolinea thermophila UNI-1]
          Length = 361

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 203/367 (55%), Gaps = 14/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D  VVVAMSGGVDSSV AALL   GY VIG+ L+L+ S +  + +  CC    +  ARR
Sbjct: 4   RDETVVVAMSGGVDSSVAAALLVEQGYRVIGMMLRLW-SEEGKEDQNRCCTPDAMALARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + +  Y  D  E+F+  V+  F   YA+G TP PC+ CNR +++  L    + LGA
Sbjct: 63  VAAKLGIPFYAVDVREKFKEVVVSHFLEGYASGITPNPCLKCNRYIRWGVLHEYAQSLGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY R R     + +    + R +D+E+DQSY L    Q+QL    FP+G+  K 
Sbjct: 123 TWFATGHYARLRRLESGEVQ----LLRGVDVEKDQSYVLSVLPQEQLRHTFFPVGEYHKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+LAR  GL +A+++DSQD+CF+  G Y D + R    ++  G IV+  G+ILG H G
Sbjct: 179 EVRELARRFGLPVANRADSQDLCFLAGGDYRDFLSRHAPEVSRPGVIVNRQGEILGEHQG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YTIGQR+GLG+A   PL+V+  D   +R++VG    L    +    +NW+       
Sbjct: 239 LAFYTIGQRKGLGIAFPRPLYVLEKDVVRNRLVVGEEHELGRSTLIAERVNWISG----Q 294

Query: 319 AVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             V   +  VKIR  +++   V +    D V V+F+     +  GQ CVFY  +      
Sbjct: 295 PPVSSIQVEVKIRYKAREAHGVVIPLTPDRVKVEFDHPLRDITPGQQCVFYQGEI----C 350

Query: 378 LGGGIIS 384
           LGGG IS
Sbjct: 351 LGGGTIS 357


>gi|15895501|ref|NP_348850.1| tRNA-specific 2-thiouridylase MnmA [Clostridium acetobutylicum ATCC
           824]
 gi|24638326|sp|Q97GY2|MNMA_CLOAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15025232|gb|AAK80190.1|AE007723_8 TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           PP-loop ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325509648|gb|ADZ21284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium acetobutylicum EA 2018]
          Length = 355

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 215/367 (58%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
           + +VV+ MSGGVDSSV A LLK  GYDVIGVT++L  +    ++++G CC+   V DARR
Sbjct: 2   NKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLTPDDAFYTEQEGGCCSLSAVEDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I +  YV ++ + F+  VI  F   Y  G+TP PC+ CN+ +KF  LL     LGA
Sbjct: 62  VAYRIGIPFYVVNFTDIFKEKVIDYFTEEYLNGKTPNPCIACNKYIKFDALLKKAESLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R    V ++G  R ++ +  D ++DQ+Y ++  TQ QL     P GD KK+
Sbjct: 122 DYIATGHYCR---IVEENG--RYVIRKSEDEKKDQTYVMYNMTQDQLKHTLMPCGDYKKD 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++ARE+GL++ DK DS++ICF+    +   +KR        G+ V   G++LG+H G
Sbjct: 177 RIREIAREIGLNVFDKKDSEEICFIPDNDHGGFIKRECPKAVKTGNFVDKEGKVLGKHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           II YTIGQR+GLG+A G+ +FV  +D   ++V++G  E +  + +   + N++  D L E
Sbjct: 237 IIYYTIGQRKGLGIATGKRVFVTNIDAMKNQVVIGEEEEIFENELISFKNNFIPFDKLTE 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              VD    +    S     PV    +D+ V V FEK +  +  GQ+ VFY  D     +
Sbjct: 297 PMEVDAKIRYNAKASKATIYPV----DDENVKVKFEKPQRAITKGQSVVFYDGD----LL 348

Query: 378 LGGGIIS 384
           +GGGII 
Sbjct: 349 VGGGIIK 355


>gi|187780204|ref|ZP_02996677.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC
           15579]
 gi|187773829|gb|EDU37631.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC
           15579]
          Length = 359

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 7   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 66

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 67  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 127 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 182 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 241

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++  D L E  
Sbjct: 242 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 301

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 302 EVEA-----KIRYSQIPSKAIITTVEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 352

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 353 GGGIIE 358


>gi|256752949|ref|ZP_05493777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748170|gb|EEU61246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 376

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 217/393 (55%), Gaps = 43/393 (10%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65
           RL +  + KN    RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +  +A + +G
Sbjct: 7   RLENFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +K
Sbjct: 64  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL
Sbjct: 124 FEELLKRAWMIDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FPLG  KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+ 
Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
               G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G            
Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG------------ 288

Query: 306 REINWLGDGLFEDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVD 351
                 GD +F D ++     F+             KIR +       ++  +DG V+V 
Sbjct: 289 -----YGDEVFGDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGRVFVK 343

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F+  +  +  GQ+ VFY  D     V+GGG I 
Sbjct: 344 FDNPQRAITPGQSVVFYDGDI----VVGGGTIE 372


>gi|331002457|ref|ZP_08325975.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410273|gb|EGG89707.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 363

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 208/365 (56%), Gaps = 14/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDV GVT+Q++ S       GS  CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +YV ++ + F++ VI  F + Y    TP PC+ CNR VK+  LL  +  LGAD
Sbjct: 65  ARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMMLGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+   ++G+    M +     +DQ+Y L+  TQ QL     P+GD +K+ 
Sbjct: 125 YIATGHY--ARIEKLENGRFALRMSKTS--AKDQTYALYNLTQDQLSKTLMPVGDYEKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A++  L +A+K DSQ+ICFV    Y   V+         G+ V  +G+ILG+H GI
Sbjct: 181 IREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPVGNFVTADGEILGKHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           ++YTIGQR+GLG+A+G P+FV  +  +++ V++G  E +  + +    +N     +  ++
Sbjct: 241 LHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLN----AMAVES 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             DG +   KIR S       ++   +D + +DF+K    +  GQA V Y        VL
Sbjct: 297 FFDGMRAVGKIRYSHKGEHCTIKVLGEDRIRIDFDKKVRAITPGQAVVLY---DESGLVL 353

Query: 379 GGGII 383
           GGG I
Sbjct: 354 GGGTI 358


>gi|257063219|ref|YP_003142891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia heliotrinireducens DSM 20476]
 gi|256790872|gb|ACV21542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia heliotrinireducens DSM 20476]
          Length = 353

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 204/365 (55%), Gaps = 19/365 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL R GY+V+G T+ LY+  +            D+ DAR V +
Sbjct: 4   RVLVGMSGGVDSSVTAYLLLRQGYEVVGATMNLYDPGRLGVPDVRDGESNDLEDARSVAN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++H+V D+   F N V+ PFA +YA G TP PC+ CNR +KF  +L   R+LG D +
Sbjct: 64  RLGIAHHVLDFGCEFENNVVRPFAQAYADGLTPNPCIACNRHLKFGLMLKAARELGCDGI 123

Query: 142 ATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ATGHY R   RL    DG  R ++ + +D  +DQ+Y L+  TQ QL     PLG+  K+ 
Sbjct: 124 ATGHYARIAQRL----DG--RFVLMKGLDDAKDQAYVLYHMTQDQLAHTVLPLGEYTKQQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E G   A K +SQDICFV  G Y   ++R    +   GD++  NG +LG+H G 
Sbjct: 178 VRAIAAEQGFANARKHESQDICFVPDGDYVGFLERYAGLVPEPGDVLDENGAVLGQHRGA 237

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YT+GQR+G+G+A  + L+V   D  ++ + +GP ++L      +   NW+   L ++ 
Sbjct: 238 IRYTLGQRKGIGIASTQALYVTAKDMAANTITMGPADALLADGCTVGNWNWI---LPDEG 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V      VK    Q P    V   +DG V  DF++     A GQ+ V Y  D+    VL
Sbjct: 295 PV---HAMVKTHYRQKPHGAMVVPQEDGTVRFDFDEPSRLAAPGQSAVAYIGDT----VL 347

Query: 379 GGGII 383
           GGGI+
Sbjct: 348 GGGIV 352


>gi|134298633|ref|YP_001112129.1| tRNA-specific 2-thiouridylase MnmA [Desulfotomaculum reducens MI-1]
 gi|172044262|sp|A4J2K1|MNMA_DESRM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134051333|gb|ABO49304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum reducens MI-1]
          Length = 367

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 209/366 (57%), Gaps = 14/366 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79
           RV+VAMSGGVDSSV AALL++ GYD++GVT+Q+++            CC+   V DARRV
Sbjct: 6   RVLVAMSGGVDSSVTAALLQQQGYDIVGVTMQIWDPEVTVVGDDYVGCCSLTAVDDARRV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV ++ E F   VI  F   Y  G TP PC+ CNR +KF  LL   RQ+G D
Sbjct: 66  ANVLGIPYYVLNFRELFTEKVIQYFVDEYFQGRTPNPCIACNRFIKFEALLQRARQMGFD 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +RL   ++ +R  +  + +D ++DQSY L+  TQ Q+     PL D  K+ 
Sbjct: 126 YIATGHY--ARLGYSEEFQRYTVK-KALDDKKDQSYVLYGFTQDQIAHTLMPLADYTKDQ 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A+EMGL    K +SQ+ICFV    Y + +   + G    G    L G +LG H GI
Sbjct: 183 VRGIAKEMGLPTYSKPESQEICFVHDNNYRNFLDERSQGGIKPGPFKDLAGNVLGEHKGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQRRGLG+A GE  +V+ +D +++ V VG  E++    +   E N++   LFE+ 
Sbjct: 243 PFYTIGQRRGLGLATGERTYVIDIDPDNNVVTVGSEEAIWGTELIASENNFI---LFEN- 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   ++R +  P P  ++   +G V V F+  +  +  GQA V+Y  D     ++
Sbjct: 299 LTGPQELEAQVRYNSKPSPAIIEPYGEGLVKVTFKYPQRAITPGQAVVYYQGDY----LV 354

Query: 379 GGGIIS 384
           GGG I 
Sbjct: 355 GGGTIE 360


>gi|108804192|ref|YP_644129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
 gi|123177389|sp|Q1AWB1|MNMA_RUBXD RecName: Full=Bifunctional protein nifU/mnmA; Includes: RecName:
           Full=NifU-like protein; Includes: RecName:
           Full=tRNA-specific 2-thiouridylase mnmA
 gi|108765435|gb|ABG04317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 488

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/362 (40%), Positives = 202/362 (55%), Gaps = 23/362 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV AMSGGVDS+V A LLK  GY+V+ VT +L++    S+   SCC+   V  AR     
Sbjct: 146 VVAAMSGGVDSAVTALLLKERGYEVVAVTFRLHDGEPGSR---SCCSPDTVLFARETAHG 202

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+  +  E F   V+  F  SYAAG TP PCV CN  VKF     +  +LG   +A
Sbjct: 203 LGIPHFTLNLRELFDRRVMRDFVGSYAAGRTPNPCVACNAHVKFHAAAFLADRLGLRHVA 262

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    VG+       + RP D  +DQ+Y L+    + L    FPLGD +K  VR 
Sbjct: 263 TGHYAR----VGEG----PCLERPEDGRKDQTYVLWPVPPRLLGRTIFPLGDYRKSEVRR 314

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A E GL +A   +SQDICF+  G Y   V+R     +  G+IV   G++LGRH G++++
Sbjct: 315 IAEERGLAVARTPESQDICFIPDGDYRSFVRRRVR--SEPGEIVDRQGRVLGRHAGVVDF 372

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQRRGLG++   PL+V  +   S +V+VG R  LEV R+ +R  NW  D         
Sbjct: 373 TVGQRRGLGISAPTPLYVTEVRPRSRQVVVGSRRELEVRRMLVRGANWFLD--------P 424

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
                V++R + +PVP  ++    G  V   +   GVA GQ+ VFYT D   A+V+GGGI
Sbjct: 425 REAALVQVRYNGEPVPCELEEGAGGWEVALLEPVFGVAPGQSAVFYTRDG--AKVVGGGI 482

Query: 383 IS 384
           I+
Sbjct: 483 IA 484


>gi|226226536|ref|YP_002760642.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27]
 gi|226089727|dbj|BAH38172.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27]
          Length = 381

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 205/376 (54%), Gaps = 19/376 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  RV+VAMSGGVDSSV AA+L   G DV+GVT++L+    A      CC+     DAR
Sbjct: 6   PKGARVLVAMSGGVDSSVAAAILMEHGCDVVGVTMKLHGD-GADVPDRPCCSLDATSDAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RVC+ + + HYV +  + F + V+  F   YA G TP+PCV CN   KF DLL     + 
Sbjct: 65  RVCEKLGIPHYVTNLVDHFSHDVLDDFVQEYARGRTPIPCVRCNTFTKFRDLLHKADAID 124

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LATGHY R     G     + +M R +D  +DQSYFL+   +  L  L  P+G   K
Sbjct: 125 APWLATGHYARIGHRHG-----QAVMVRGLDTSKDQSYFLWGIDRPVLDRLVLPIGAQTK 179

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILG 254
              RD+AR  GL  A+K +SQDICFV  G +  V+      +A     G +   +G+I+G
Sbjct: 180 AETRDIARRFGLRTAEKIESQDICFVPDGDHVRVIAEHLGADAPALQPGPLRLASGEIIG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   +TIGQR+GL     EP+FVV +  +   V+VGPRE+L    +  RE+NWL   
Sbjct: 240 EHQGFARFTIGQRKGLPGGFAEPMFVVEIVPSERAVVVGPREALLGRGVEARELNWLA-- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +A   G +  V++R+   P P  + R D  G+ +  +++   ++ GQ+ V +  D  
Sbjct: 298 ---EAPPVGAQVQVQVRNRARPSPATIVRVDPQGIELALDEAVQAISPGQSLVVFDGDV- 353

Query: 374 EARVLGGGIISGSKRS 389
              VLGGGII    R+
Sbjct: 354 ---VLGGGIIERGMRA 366


>gi|255524816|ref|ZP_05391766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|296188647|ref|ZP_06857035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|255511483|gb|EET87773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|296046911|gb|EFG86357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
          Length = 358

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 213/366 (58%), Gaps = 15/366 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78
           + +VV+ MSGGVDSSV A LLK+ GYDVIGVT+Q++   +  +  +G CC+   V DARR
Sbjct: 2   NKKVVIGMSGGVDSSVAAYLLKQQGYDVIGVTMQVWQEDEEYEAVEGGCCSLSAVEDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++++ F+  VI  F   Y  G TP PCV CN+ +KF  LL    +LGA
Sbjct: 62  VAYKLDIPFYVMNFKDIFKKNVIDYFIDEYMQGRTPNPCVACNKFIKFDALLKKAMELGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      V +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KKE
Sbjct: 122 DYVATGHYA-----VVEKHDNRYILRKSEDDKKDQTYALYNLTQFQLEHTLMPCGVYKKE 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K+        G+ V   G +LGRH G
Sbjct: 177 RIREIAKEIGLLVHNKKDSEEICFIPDNDHGGYIKKQVPSKVKPGNFVDKEGNVLGRHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G P++V  ++   + V++G    +    +  ++IN++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGVPMYVTDINPLRNEVVLGSENDIFKTELIAKDINFIP----FD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           ++    +   K+R S  P   ++   D+G V V+FE  +  +  GQ+ VFY +D     +
Sbjct: 293 SLQGTMEIQAKVRYSAKPSRAWITALDNGRVKVEFENKQRAITKGQSVVFYNND----LL 348

Query: 378 LGGGII 383
           LGGG+I
Sbjct: 349 LGGGVI 354


>gi|87306814|ref|ZP_01088960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blastopirellula marina DSM 3645]
 gi|87290187|gb|EAQ82075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blastopirellula marina DSM 3645]
          Length = 363

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 205/378 (54%), Gaps = 35/378 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGV-------------------TLQLYNSRKASKRKGSC 67
           MSGGVDSSV A LL  +G++VIGV                    L + N R   K+   C
Sbjct: 1   MSGGVDSSVAAHLLLEEGHEVIGVFMRHGEQSPVASCQIDGQSALPILNDRPDHKQ--GC 58

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C+  D  DARRV D + +  Y  + +  F   +I  F   Y AG TP PCV CN  +KF 
Sbjct: 59  CSASDAADARRVADNLQIPFYALNLQREF-GQIIDYFVDEYVAGRTPNPCVMCNNWIKFG 117

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L      +GA+ +ATGHY R    + D       + R +D  +DQ+Y LF   ++ L  
Sbjct: 118 KLFDYADSVGAEYVATGHYAR---LITDQTDALPRLVRGVDSGKDQTYVLFGIGREYLRR 174

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +  P+G  +K  +R+LA ++G+ +ADK DSQ+ICFV  GK+ + +K   A +   G+IV 
Sbjct: 175 MLLPVGQFEKSRIRELAGQIGMRVADKKDSQEICFVTSGKHDEFIKSRRADLQTAGEIVT 234

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G+++G H+GI  YTIGQR+GLGVA+GEP FVV +D  +++V++G +E L    +  R+
Sbjct: 235 TAGEVVGTHDGIEKYTIGQRKGLGVALGEPRFVVRIDAETNQVVIGEKEELGRTELTARD 294

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
            NWL      D      +C  +IR + D  P  V+   DG + V F++   GVA GQA V
Sbjct: 295 CNWL-----VDLPAGPLRCRAQIRYNSDDAPATVEHLPDGRIAVTFDEPRRGVAPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIIS 384
            Y  D    +VLGGG I 
Sbjct: 350 CYDGD----QVLGGGWIE 363


>gi|167039428|ref|YP_001662413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|300915481|ref|ZP_07132794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307725247|ref|YP_003904998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|166853668|gb|ABY92077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|300888541|gb|EFK83690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307582308|gb|ADN55707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
          Length = 376

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 217/393 (55%), Gaps = 43/393 (10%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65
           RL +  + KN    RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +  +A + +G
Sbjct: 7   RLENFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +K
Sbjct: 64  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL
Sbjct: 124 FEELLKRAWMIDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FPLG  KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+ 
Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
               G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G            
Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG------------ 288

Query: 306 REINWLGDGLFEDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVD 351
                 GD +F D ++     F+             KIR +       ++  +DG V+V 
Sbjct: 289 -----YGDEVFGDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVK 343

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F+  +  +  GQ+ VFY  D     V+GGG I 
Sbjct: 344 FDNPQRAITPGQSVVFYDGDI----VVGGGTIE 372


>gi|331082285|ref|ZP_08331411.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400771|gb|EGG80372.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 209/369 (56%), Gaps = 17/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++     +  +  G CC    V DARRV
Sbjct: 5   KVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV ++ + F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  AQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G    R  +  +     +DQ+Y L+  TQ+QL     P+G+  KE
Sbjct: 125 YIATGHYARVEQLPNGRYAIRNSVTAK-----KDQTYALYNLTQEQLSRTLMPVGEYTKE 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A+E GL +A K DSQ+ICFV    Y   ++        EG+ V  +G ++G+H G
Sbjct: 180 EIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YTIGQR+GL ++MG P+FV  +  +++ V++G  E L V  +    +N++      D
Sbjct: 240 IIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAI----D 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +G +   KIR +       ++   +G V V F + +  V  GQA VFY  +     V
Sbjct: 296 HLEEGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFREPQRAVTPGQAVVFYDGEY----V 351

Query: 378 LGGGIISGS 386
            GGGII G 
Sbjct: 352 AGGGIILGK 360


>gi|322420793|ref|YP_004200016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
 gi|320127180|gb|ADW14740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
          Length = 357

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 212/375 (56%), Gaps = 27/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  ++ VAMSGGVDSS VAALLK  G +VIG+ ++L+      +R+G     Q   DAR 
Sbjct: 6   KGKKIAVAMSGGVDSSTVAALLKEQGAEVIGINMKLF------RREGE--DPQAKGDARI 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + +  +    EE F   ++  F S Y  GETP PCV CNR VKF  LL    +LGA
Sbjct: 58  VAEYLGIEFHQVHLEEEFARLIMEDFRSQYLGGETPNPCVRCNRYVKFGLLLDKALELGA 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D LATGHY+R+     DD     ++ +   L +DQSYFL+  TQ QL  + FPLGDM  K
Sbjct: 118 DYLATGHYVRTSR---DDSGTYHLL-KAAHLAKDQSYFLYTLTQPQLARVLFPLGDMPSK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR  A   G+ +A KSDSQ+ICFV    Y   +++        G+IVH+NG +LGRHN
Sbjct: 174 DEVRKRAAAFGIPVAQKSDSQEICFVPGDDYVAFLEKDGRLAGKSGEIVHVNGTVLGRHN 233

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL--GDGL 315
           G   YTIGQRRGLG+A  EPL+VV +D  ++RV+VG    L    +   +++W+   DG 
Sbjct: 234 GTHRYTIGQRRGLGIAWKEPLYVVAIDAINARVVVGEVGILFAPGLTACDLSWVVPPDG- 292

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNE 374
                 +  +   KIR  Q+PV   V+   DG   V F + +  V  GQ+ VFY  +   
Sbjct: 293 ------ETVQTTCKIRYRQNPVECSVKLLGDGRGEVRFSEPQKSVTPGQSVVFYQDEE-- 344

Query: 375 ARVLGGGIISGSKRS 389
             ++GGG I G+  S
Sbjct: 345 --LVGGGRIVGALSS 357


>gi|17228854|ref|NP_485402.1| tRNA-specific 2-thiouridylase MnmA [Nostoc sp. PCC 7120]
 gi|24638319|sp|Q8YX56|MNMA_ANASP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17130706|dbj|BAB73316.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Nostoc sp. PCC 7120]
          Length = 352

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/364 (39%), Positives = 211/364 (57%), Gaps = 21/364 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCS-EGMIDAAYICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            + + H V D  + F+  ++    + Y AG TPLPC  CN+TVKF  ++   + +LG D 
Sbjct: 56  QLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYASEKLGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+M+K   
Sbjct: 116 IATGHYARIRY---DEATGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKADT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E GL  ADK +SQD+C V+          ++  IA + GDIV   G++LG+H+G+
Sbjct: 173 RRIATEHGLKTADKPESQDLCLVESNGSMRAF--LDKYIAPKKGDIVDTAGKVLGQHDGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+VV LD   ++V+VG R         +  +NW+   + E +
Sbjct: 231 HHYTIGQRKGLGIAAPEPLYVVELDAVHNKVVVGDRTKATQEECTVNRVNWV--SIAEPS 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                   ++ RS+ +PV V    N   V + F++ +  +  GQA V+Y  D N  +VLG
Sbjct: 289 TPIRAAVQIRYRSAPEPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWY--DGN--KVLG 343

Query: 380 GGII 383
           GGII
Sbjct: 344 GGII 347


>gi|205815331|sp|B0K584|MNMA1_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
          Length = 364

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 213/382 (55%), Gaps = 40/382 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +  +A + +G CC+   V DA
Sbjct: 3   KNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     +
Sbjct: 63  RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  K
Sbjct: 123 DAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG H
Sbjct: 180 KDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G                  GD +F
Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG-----------------YGDEVF 282

Query: 317 EDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
            D ++     F+             KIR +       ++  +DG V+V F+  +  +  G
Sbjct: 283 GDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPG 342

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  D     V+GGG I 
Sbjct: 343 QSVVFYDGDI----VVGGGTIE 360


>gi|302392703|ref|YP_003828523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetohalobium arabaticum DSM 5501]
 gi|302204780|gb|ADL13458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetohalobium arabaticum DSM 5501]
          Length = 361

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 218/376 (57%), Gaps = 20/376 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAG 70
           L LD+N    RVVVAMSGGVDSS+ AA+LK++GY+VIG+T++++ S +     +  CC+ 
Sbjct: 2   LGLDQN----RVVVAMSGGVDSSLAAAILKKEGYEVIGITMKIWPSEETPVDNENGCCSL 57

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             V DARRV   +++  YV ++E+ F+  VI  F + YA   TP PCV CN+ +KF+  L
Sbjct: 58  SAVNDARRVAYKLDIPFYVINFEDLFKRTVIQNFKNEYAQARTPNPCVVCNKVIKFNAFL 117

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  ++LGA  +ATGHY  +++   +DG  R ++ +    ++DQ+Y L+  TQ+QL    F
Sbjct: 118 NKAKELGAYYMATGHY--AKIIQNEDG--RYLLKKSAAPDKDQTYMLYNLTQEQLKHTIF 173

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PL +  K+  R+LA++  L + DK +SQ+ICF+    Y   ++  +  I   G I+ + G
Sbjct: 174 PLAEYTKQQTRELAKDYDLKVYDKPESQEICFIPDDDYRRFLQENHPEIIEPGPILDVEG 233

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG H G+  YTIGQRRGLG+   + L+VV +D   + +IVG  E +    + + EINW
Sbjct: 234 NKLGEHKGLPFYTIGQRRGLGLENNKKLYVVDMDPERNALIVGDNEDVFAKELIVEEINW 293

Query: 311 LG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFY 368
           +  + L E   V       KIR +       +   ++ V  V F + +  +  GQ+ VFY
Sbjct: 294 ISIEKLTEPKEVQA-----KIRYNSPAAEATIYPVEENVAKVVFAEPQRAITPGQSAVFY 348

Query: 369 TSDSNEARVLGGGIIS 384
               N+  V+GGG+I 
Sbjct: 349 ----NQNIVVGGGVIK 360


>gi|291558301|emb|CBL35418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum V10Sc8a]
          Length = 358

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 13/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + V+AMSGGVDSSV A L+K+  +D IGVT++L+ N      R+ SCC+  DV DAR V 
Sbjct: 4   KAVIAMSGGVDSSVAAYLMKQRVFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARSVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++++ +YVF++ +RF   VI  F  +Y  G TP PC+DCNR +KF  L    ++L  D 
Sbjct: 64  YSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDRDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY  +R+  G++G  R ++ + +D  +DQSY L+  TQ+QL    FPLG+M+K   
Sbjct: 124 VVTGHY--ARVEKGENG--RFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKSQA 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   G   A K+DSQDICFVQ G Y D +++       +GD +  NG ++GRH G+I
Sbjct: 180 REIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKGVI 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG++  EPL+V  ++   + V +   + L    +   +IN +        +
Sbjct: 240 RYTVGQRKGLGISAPEPLYVKAVNPVINTVTLSYNDGLYSSIVKAGDINLIS----VPEI 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +   K+R         V +N D +   F++ +  V  GQA V Y  D+    V+GG
Sbjct: 296 KGEMRVKAKVRYRHTEQWATVTQNSDTITAVFDEPQRAVTCGQALVLYDGDT----VVGG 351

Query: 381 GII 383
           G I
Sbjct: 352 GTI 354


>gi|205814656|sp|B1X0U7|MNMA_CYAA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 355

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 206/367 (56%), Gaps = 27/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F   +I    S Y +G TPLPC  CNR VKF  +L+  ++ L  D 
Sbjct: 56  QLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAKEELNCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+  RR  + R +D  +DQSYFL+  +Q  L    FPLG+  KE  
Sbjct: 116 IATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           R +A E  L  A K +SQD+C ++       + D   +       EG+IV L+G++LG H
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIKPK-----EGEIVDLDGKVLGTH 227

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R +       +  +NW+   + 
Sbjct: 228 QGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWV--SIA 285

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E +     +  V+ RS   PV +    N+  V + F + + G+  GQA VFY  +     
Sbjct: 286 EPSSPITVEVQVRYRSKAVPVSIIPIENNR-VTLQFNEPQFGITPGQAAVFYDGEI---- 340

Query: 377 VLGGGII 383
           VLGGGII
Sbjct: 341 VLGGGII 347


>gi|254423006|ref|ZP_05036724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. PCC 7335]
 gi|196190495|gb|EDX85459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. PCC 7335]
          Length = 365

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 210/375 (56%), Gaps = 22/375 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSSV AA L   G++VIG+TL L       K KG CC+ + + DA ++CD
Sbjct: 3   KIVVGLSGGVDSSVAAATLHNQGHEVIGLTLWLM------KGKGQCCS-EGMTDAAKLCD 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            + +++ V D  E F   ++      Y+ G TPLPC  CN TVKF  +L     ++GAD 
Sbjct: 56  HLGIAYNVVDSREVFEKYIVNYLVEGYSRGVTPLPCSQCNSTVKFGPMLDYAVNEMGADY 115

Query: 141 LATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +ATGHY R    L  G     R  + R +D  +DQSYFL+  +Q  L   +FPLGD  K 
Sbjct: 116 IATGHYARITHNLETG-----RYELRRAVDRNKDQSYFLYDLSQTHLAASQFPLGDTTKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             R +A  +GL  A+K +SQD+C V+Q G     + +  A     GDIV  +GQ+LG+H 
Sbjct: 171 ETRKIAASLGLHTAEKPESQDLCLVEQHGSMKTFLDKFLA--PKPGDIVTTSGQVLGQHE 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YTIGQRRGLG+A   PL+VV LD   ++V+VG R+S+  H   +  +NW+      
Sbjct: 229 GIHHYTIGQRRGLGIAAPNPLYVVSLDVGRNQVVVGERDSVTSHGCIVHRVNWVSIAPPT 288

Query: 318 DAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +    +   + ++ Q  V P       D V + F++ + GV  GQA V+Y S   + R
Sbjct: 289 SPISVEVQIRYRSQAVQATVIPTCRVDGTDRVRIIFDEPQFGVTPGQAAVWYDS---KGR 345

Query: 377 VLGGGIISGSKRSDA 391
           VLGGGII  +   D 
Sbjct: 346 VLGGGIIEPTCSDDT 360


>gi|172038551|ref|YP_001805052.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. ATCC 51142]
 gi|171700005|gb|ACB52986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. ATCC 51142]
          Length = 367

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 150/367 (40%), Positives = 206/367 (56%), Gaps = 27/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 15  KVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F   +I    S Y +G TPLPC  CNR VKF  +L+  ++ L  D 
Sbjct: 68  QLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAKEELNCDR 127

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+  RR  + R +D  +DQSYFL+  +Q  L    FPLG+  KE  
Sbjct: 128 IATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           R +A E  L  A K +SQD+C ++       + D   +       EG+IV L+G++LG H
Sbjct: 185 RRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIKPK-----EGEIVDLDGKVLGTH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R +       +  +NW+   + 
Sbjct: 240 QGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWV--SIA 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E +     +  V+ RS   PV +    N+  V + F + + G+  GQA VFY  +     
Sbjct: 298 EPSSPITVEVQVRYRSKAVPVSIIPIENNR-VTLQFNEPQFGITPGQAAVFYDGEI---- 352

Query: 377 VLGGGII 383
           VLGGGII
Sbjct: 353 VLGGGII 359


>gi|73920128|sp|Q72Q44|MNMA_LEPIC RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 375

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 219/381 (57%), Gaps = 13/381 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           +++VAMSGGVDS+V A LL  DGY+VIGV L+   Y +      K SCC+ +D+ DAR V
Sbjct: 5   KIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + LG D
Sbjct: 65  GISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGID 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  +G+R  I    +D+ ++Q+Y+L+  +Q+ L ++ FPLG+M K  
Sbjct: 125 KIATGHYAR----IARNGERYAI-ANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +AR MGL +ADKS+SQ+ICF+ +  Y   +++ N      G     +G+I+G+H G 
Sbjct: 180 VRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKNVEFT-PGFFKLKDGRIVGKHKGR 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            N+TIGQR+GLG+A   PL+V+ ++ + S VI+G           + ++N+ G     + 
Sbjct: 239 ENFTIGQRKGLGIAWKNPLYVISIEDDGS-VILGEENETYNESFSVIDLNFQGLAPLNEG 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
             +  +C V++R    P+   + +  +G+ V   +   GV  GQ+ VFY  DS+   +L 
Sbjct: 298 --ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLL 353

Query: 380 GGIISGSKRSDAVEESLLSVI 400
           GGIIS       V E  +SV+
Sbjct: 354 GGIISKGSIQMRVAEPAISVL 374


>gi|258515487|ref|YP_003191709.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779192|gb|ACV63086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 362

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 214/371 (57%), Gaps = 21/371 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDAR 77
           K  +VVVAMSGGVDSSV AALL  +GY++ GVT+Q+++  +K +  +  CC+   V DAR
Sbjct: 2   KGKKVVVAMSGGVDSSVTAALLLEEGYEITGVTMQIWDPEQKDATGEEGCCSLSAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + +N+ +YV ++ ++F  +VI  F + Y  G TP PC+ CNR VKF+ LL     +G
Sbjct: 62  RVANILNIPYYVLNFRKQFEKSVIDYFLAEYLEGRTPNPCIACNRYVKFTALLQKAISIG 121

Query: 138 ADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           AD +ATGHY R   S+ Y       R I+ +  D+++DQ+Y L+  TQ Q+     PLG 
Sbjct: 122 ADFIATGHYARLGYSKEY------NRYIIKKSADIKKDQTYVLYNLTQNQIAHTLMPLGV 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             KE VR++A +  L +A K +SQ+ICFV    Y   +++        G  + + G+++G
Sbjct: 176 YTKEQVREMALKYCLPVAAKPESQEICFVPDNDYRSFIQKKTDAEIKPGLFLDIQGKVIG 235

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-INWLGD 313
            H GI  YT GQRRGLG+A GE ++VV +D   + V +G  E      I+ RE I+   +
Sbjct: 236 EHRGIPYYTYGQRRGLGIAAGERMYVVDIDPARNTVTLGYEED-----IFTRELISGQNN 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            +  D ++   +   KIR +  P   V     +D V V F++ +  V  GQA VFY+ D+
Sbjct: 291 FIAIDKLIAPMEVEAKIRYNSKPYKAVIFSEGEDRVKVVFDEPQRSVTPGQAVVFYSGDT 350

Query: 373 NEARVLGGGII 383
               V+GGG I
Sbjct: 351 ----VIGGGTI 357


>gi|168183036|ref|ZP_02617700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|182673881|gb|EDT85842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
          Length = 356

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 210/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARRV 
Sbjct: 4   KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G D 
Sbjct: 64  NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY   + +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 124 VATGHYAIIKKH-----NDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H GI+
Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GL +A G+P++VV ++   + V++G  E L    +  ++ N++  D L E  
Sbjct: 239 YYTIGQRKGLSIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P    +   DDG V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 299 EVEA-----KIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 350 GGGIIE 355


>gi|237739900|ref|ZP_04570381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
 gi|229423508|gb|EEO38555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
          Length = 362

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 208/377 (55%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D + K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSDKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIQKDRLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA+++G+ +  K DSQ+ICF+  GK  + +     G A + G+IV 
Sbjct: 169 IFPVGDLEKPKLRELAKQIGVRVYSKKDSQEICFIDDGKLKEFLIENTKGKAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG+ILG+H G   YTIGQR+GLG++  EPL+V+  DK+++ +IVG  E L    +    
Sbjct: 229 KNGKILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELVATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        +++N D   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY +D N   V+ GG I
Sbjct: 347 FYNNDGN---VIAGGFI 360


>gi|298490709|ref|YP_003720886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           ['Nostoc azollae' 0708]
 gi|298232627|gb|ADI63763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           ['Nostoc azollae' 0708]
          Length = 351

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 212/365 (58%), Gaps = 23/365 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GYDVIG+TL L       K KG CC+ + + DA  VC+
Sbjct: 3   KVVVGLSGGVDSSVAAAMLHNQGYDVIGLTLWLM------KGKGQCCS-EGMIDAASVCE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H V D  + F+  ++    S Y+ G TPLPC  CN+TVKF  ++   R+ LG++ 
Sbjct: 56  QLGIPHEVVDIRDVFQANIVDYLLSGYSMGITPLPCSQCNKTVKFGPMVEYAREKLGSNA 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R    D+   R  + R +   +DQSYFL+  +Q  L    FPLG++ K   
Sbjct: 116 IATGHYAQVRY---DETTGRYKLLRAVYRNKDQSYFLYDLSQDLLSASVFPLGELNKTDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E GL  ADK +SQD+C V+  G     + R    +   GDI+   G++LG+H+G+
Sbjct: 173 RRIAAEYGLTTADKPESQDLCLVESNGSMRAFLDRYL--VPKPGDILDTTGKVLGQHDGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+G+G+A  EPL+V+ LD  ++RV+VG R         L  +NW+   + E A
Sbjct: 231 HHYTIGQRKGIGIAADEPLYVIELDAVNNRVVVGERTKGTQSECTLNRVNWV--SIAEPA 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V+IR    PVPV V   +D  V + F++ +  +  GQA V+Y  D    +VL
Sbjct: 289 T--PIRAEVQIRYRSQPVPVTVIPLEDFRVRLVFDEPQFSITPGQAAVWYEGD----KVL 342

Query: 379 GGGII 383
           GGGII
Sbjct: 343 GGGII 347


>gi|326201928|ref|ZP_08191798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987723|gb|EGD48549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium papyrosolvens DSM 2782]
          Length = 359

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 208/366 (56%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79
           +V++ MSGGVDSSV AA+L + GY+VIGVTLQ++      ++K  G CC+   V DARRV
Sbjct: 5   KVMLGMSGGVDSSVAAAILLKQGYEVIGVTLQIWQDMDEERQKSEGGCCSLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV ++++ F   VI  F   Y  G TP PC+ CNR VK+  +L     +G D
Sbjct: 65  ANKLGIPYYVLNFKDIFNKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMGID 124

Query: 140 VLATGHYIRSRLYVGDDGKRRR-IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY +    V  D K  R I+ + +   +DQ+Y L+  TQQQL     P+GD  K+
Sbjct: 125 YIATGHYAK----VMQDAKTGRFILKKSVTDRKDQTYALYNLTQQQLSHTLMPVGDYTKD 180

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL +A K DSQ+ICF+    Y   +        + G  +   G +LG H G
Sbjct: 181 EIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFLDTKGNVLGNHKG 240

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I++YT+GQR+GLG+A G+P+FVV ++  ++ V++G    +    +   ++N++       
Sbjct: 241 IVHYTVGQRKGLGIAFGKPMFVVAVNPENNTVVLGDDSEVFSETLTASDLNFIS----IP 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             +DG +   KIR S    P  +   D+  + V F+  +  +  GQ+ VFY  D     V
Sbjct: 297 KPIDGMRVNAKIRYSAKEAPATINVIDENRISVVFDIPQRAITPGQSVVFYDGDV----V 352

Query: 378 LGGGII 383
           +GGG I
Sbjct: 353 VGGGTI 358


>gi|237744375|ref|ZP_04574856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229431604|gb|EEO41816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 362

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 209/384 (54%), Gaps = 37/384 (9%)

Query: 6   ATRLNS-LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           A+  N  ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +    
Sbjct: 8   ASEFNKYIEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS---- 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                     DA++VCD + + HYV D  + F+  V+  F S Y  G TP PC+ CNR +
Sbjct: 64  ----------DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHI 113

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           KF  +L      GA  +ATGHY + +   L VGDD              +DQ YFL    
Sbjct: 114 KFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIQ 161

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           + +L  + FP+GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK  + +     G A 
Sbjct: 162 KDRLNKIIFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAK 221

Query: 242 E-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           + G+IV  +G ILGRH G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L  
Sbjct: 222 KTGNIVDRDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFK 281

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GV 359
             +    +N       E   +D  +CF K RS        ++++ D   V F  ++V  +
Sbjct: 282 DELIATRLNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAI 339

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQ  VFY   +NE  V+ GG I
Sbjct: 340 TPGQGIVFY---NNEGNVIAGGFI 360


>gi|56752503|ref|YP_173204.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC
           6301]
 gi|81300318|ref|YP_400526.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC
           7942]
 gi|81561195|sp|Q5MZ36|MNMA_SYNP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123556790|sp|Q31N30|MNMA_SYNE7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56687462|dbj|BAD80684.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Synechococcus elongatus PCC 6301]
 gi|81169199|gb|ABB57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus elongatus PCC 7942]
          Length = 357

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 210/371 (56%), Gaps = 23/371 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV AALL R GY V G+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   RVVVGLSGGVDSSVAAALLHRQGYAVEGLTLWLM------KGKGQCCS-EGMVDAAGICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + V ++V D  +RF+ A++      Y AG TPLPC  CNR VKF  +L   + +L AD 
Sbjct: 56  QMGVPYHVVDSRDRFQEAIVDYVVQGYEAGITPLPCSQCNRAVKFGPMLDYAKTELKADA 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    +    R  + R +D  +DQ+YFL+   Q  L  ++FPLG++ K   
Sbjct: 116 IATGHYARLRQ---NPETGRTELLRAVDRNKDQTYFLYDLPQSVLQSVKFPLGELTKPET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E+GL  A+K +SQD+C  +  G     + R     + EG+IV  +G++LG+H GI
Sbjct: 173 RQIAAELGLRTAEKPESQDLCLAEVHGSMRAFLDRYIE--SREGEIVDQSGRVLGKHTGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+V+ +D   +RV+VG R S       +  +NW+     +  
Sbjct: 231 HHYTIGQRKGLGIAHSEPLYVIAIDPIQNRVVVGDRHSAAQSECTVSRVNWVSIAQPDAP 290

Query: 320 VVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +  V++R    PVP   +    D   + F   +  +  GQA V+Y  D    R+L
Sbjct: 291 I----QAAVQVRYRSAPVPCTVIPLAGDRARILFADPQFSITPGQAAVWYDGD----RLL 342

Query: 379 GGGIISGSKRS 389
           GGG+I   +R+
Sbjct: 343 GGGLIDRVERT 353


>gi|218439179|ref|YP_002377508.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7424]
 gi|226704768|sp|B7KHE5|MNMA_CYAP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218171907|gb|ACK70640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7424]
          Length = 349

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 151/366 (41%), Positives = 205/366 (56%), Gaps = 25/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSS  AA L   GYDV+G+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   RVVVGLSGGVDSSTAAASLHHQGYDVVGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H++ D  + F   +I    S Y  G TPLPC  CNR VKF  +L+  RQ LG D 
Sbjct: 56  QLGIPHHIVDSRDVFEKNIIDYLVSGYEVGITPLPCSQCNRAVKFGPMLNYARQELGIDR 115

Query: 141 LATGHYIRSRLYVG-DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +ATGHY R    +G D+   R  + R +D  +DQSYFL+  TQ  L    FPLG+  KE 
Sbjct: 116 IATGHYAR----IGYDEVSGRYQLLRAVDRNKDQSYFLYDLTQDLLAATLFPLGNQTKEE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C ++  G   + + +       EGDIV L G++LG+H G
Sbjct: 172 TRRIAHEFGLKTADKPESQDLCLIEAHGSMQEFLDKYIK--QKEGDIVDLKGKVLGKHKG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLGVA  EPL+VV LD   +RVIVG R         +  +NW+      D
Sbjct: 230 IHHYTIGQRKGLGVAAPEPLYVVKLDPIMNRVIVGNRADAGQSECNVSRMNWVS---IPD 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +   ++R    PV V  +   D+ + + F++ + G+  GQA V Y  D     +
Sbjct: 287 PSTP-IQTEAQVRYRSFPVRVNVIPLGDNRITLVFDEPQFGITPGQAAVLYQGDI----L 341

Query: 378 LGGGII 383
           LGGGII
Sbjct: 342 LGGGII 347


>gi|260886459|ref|ZP_05897722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sputigena ATCC 35185]
 gi|260863841|gb|EEX78341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sputigena ATCC 35185]
          Length = 344

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 141/358 (39%), Positives = 207/358 (57%), Gaps = 19/358 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSS+ AALL+  GY+V+G+T+QL +  +      S        DARRV D + + 
Sbjct: 1   MSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMNGVSSAAT-----DARRVADFLGIE 55

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H V D+   F + V+  F + Y    TP PCV CNR +KF +LLS  ++ GAD LATGHY
Sbjct: 56  HVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADFLATGHY 115

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R  +   +DG     + +  D ++DQSY L+   ++ L  + FPLG  +KE  R LA++
Sbjct: 116 VR--VEKEEDGSFS--LKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEETRALAQK 171

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           + L +A+K++SQ+ICFV +  Y   + +        GDIV + GQILG+H G+  YTIGQ
Sbjct: 172 LSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGLPFYTIGQ 231

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           R+GLG+A   PL+V+ LD+ ++RVIVG  E L    ++  ++NWL +   ++  V     
Sbjct: 232 RKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLMEEPTQEISVHA--- 288

Query: 327 FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             KIR     V   V   +DG V V F + +  V  GQ+ VFY+ +    R++GG  I
Sbjct: 289 --KIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLVGGATI 340


>gi|307691533|ref|ZP_07633770.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcaceae bacterium D16]
          Length = 361

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 197/363 (54%), Gaps = 12/363 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVCD 81
           +  AMSGGVDSS    LL++ GYD +G T+ L++       ++  C   +DV DA+ V  
Sbjct: 4   IAAAMSGGVDSSTAVWLLQQAGYDPVGFTMSLFSPDALPPDQRSQCHTARDVADAQAVAQ 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +SH+  D  E F   V+ PF  +Y  G+TP PCV CNR +KF  LL   +++G  +L
Sbjct: 64  RLGISHHTLDLSESFCREVMDPFVQAYEQGQTPNPCVLCNRAIKFGALLQAAQEMGCPLL 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D G  R ++ + +  ++DQSY L+  TQQQL   RFPLG + KE +R
Sbjct: 124 ATGHYAQVE---QDSGSGRWLLKKALHPDKDQSYVLWTLTQQQLAATRFPLGQLSKEEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A KSDSQDICFV  G Y   +          GD V   G +LGRH GII+
Sbjct: 181 AIALEQGLVSARKSDSQDICFVPDGDYASFICHHTGKHYPSGDFVDPQGNVLGRHQGIIH 240

Query: 262 YTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           YT+GQRRGLGV+  +  L+V  L    + V +G   +L    +   ++N +     +  +
Sbjct: 241 YTLGQRRGLGVSSNQGRLYVTGLSPQDNTVTLGSNAALLHRSLTAGQLNLIAMERLDQPI 300

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               K  V+ R ++ P  +  Q   D   + F++ +  +  GQ+ VFY  D     VLGG
Sbjct: 301 QVMAK--VRYRMTEQPA-ILEQTGPDTARLTFQEPQRAITPGQSVVFYQDDV----VLGG 353

Query: 381 GII 383
           GII
Sbjct: 354 GII 356


>gi|139438964|ref|ZP_01772424.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC
           25986]
 gi|133775675|gb|EBA39495.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC
           25986]
          Length = 366

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 208/369 (56%), Gaps = 13/369 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VAMSGGVDSSV A LLK  GY+ +G T++L          G     +D+ DA+ V +
Sbjct: 5   RVLVAMSGGVDSSVTAYLLKSQGYECVGATMRL-TCPAPDPTTGMSKVDRDIADAKAVAE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H+V D ++ F   VI  F ++Y  G TP PC+ CNR +KF  LL     +G D +
Sbjct: 64  RLGIPHHVLDLQQTFDRNVIERFVNAYQEGLTPNPCIICNRHIKFGALLDAALDMGCDYI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE-SV 200
           ATGHY ++      DG  +  + R  D ++DQSYFL++ TQ++L    FPL  + KE  V
Sbjct: 124 ATGHYAKTSQAA--DGTWQ--LHRGEDPKKDQSYFLYSLTQERLAHTIFPLAGLDKERDV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E G   A K++S+DICF+  G Y D ++R     A  GDIV  +G ++GRHNG +
Sbjct: 180 RRIAAEQGFTNAQKAESEDICFIPDGDYADYIERRCGHTAAPGDIVWRDGSVVGRHNGAL 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLGVAM  P++V  +D  ++ V +G  E L    +   E  W       +A 
Sbjct: 240 RYTIGQRKGLGVAMAHPVYVTGIDAANNTVHLGEAEDLTAVALTADEWIWSAPDARMEAE 299

Query: 321 VD--GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           +D  G +   K R  Q      + R++DG + + F++ +  +A GQA V Y  D     V
Sbjct: 300 LDAGGIRVGAKYRYRQKDQAATLTRDEDGQMLLTFDEPQRAIAPGQAVVVYRGDI----V 355

Query: 378 LGGGIISGS 386
           LGGG ++G+
Sbjct: 356 LGGGTVTGA 364


>gi|289428353|ref|ZP_06430040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J165]
 gi|289158502|gb|EFD06718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J165]
          Length = 366

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 120 DAVATGHYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKM 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257
           +VR  A  +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HN
Sbjct: 175 NVRQEATALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHN 231

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  ++TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W   
Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D  
Sbjct: 290 ---SSEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD-- 344

Query: 374 EARVLGGGIISGSKRS 389
              V+G   I G+ R+
Sbjct: 345 --LVVGSATICGTDRA 358


>gi|156741716|ref|YP_001431845.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus castenholzii DSM
           13941]
 gi|156233044|gb|ABU57827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseiflexus castenholzii DSM 13941]
          Length = 383

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 215/375 (57%), Gaps = 20/375 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++AMSGGVDSS+ AALL   G+DV GVTL L+        +  CC+ +    ARRVC 
Sbjct: 15  KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YVF+Y+  FR +VI  F   YA+G TP PC++CNR +KF  LL+  R LG D +
Sbjct: 75  QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 134

Query: 142 ATGHYIRSRL---------YVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ATGHY R R+             +G +R +  + R +D E+DQSY L+   Q  L  L F
Sbjct: 135 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 194

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           P+G+  K  VR LA   GL  A++ +SQDICFV  G Y ++++         G I+ L G
Sbjct: 195 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 254

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           + +GRH G+  YTIGQRRGLG+A G+P++V+ LD   + VIVGP  +L    +    + +
Sbjct: 255 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +  G + +A    F C  +IR+  D VP  V     + V V FE  +  +  GQA VFY 
Sbjct: 315 V-SGSWPEA---PFDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFY- 369

Query: 370 SDSNEARVLGGGIIS 384
              + A VLGGG I+
Sbjct: 370 ---DGAVVLGGGRIA 381


>gi|50842596|ref|YP_055823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes KPA171202]
 gi|289425475|ref|ZP_06427252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK187]
 gi|81611733|sp|Q6A8Q1|MNMA_PROAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50840198|gb|AAT82865.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes KPA171202]
 gi|289154453|gb|EFD03141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK187]
          Length = 366

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 120 DAVATGHYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKM 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257
           +VR  A  +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HN
Sbjct: 175 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHN 231

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  ++TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W   
Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D  
Sbjct: 290 ---SSEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD-- 344

Query: 374 EARVLGGGIISGSKRS 389
              V+G   I G+ R+
Sbjct: 345 --LVVGSATICGTDRA 358


>gi|86157907|ref|YP_464692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123497474|sp|Q2IHX6|MNMA_ANADE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|85774418|gb|ABC81255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 153/364 (42%), Positives = 200/364 (54%), Gaps = 13/364 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSS  AALL  +G++VIGVT+++ +   A++ + SCCA  DV DAR   
Sbjct: 1   MRILVAMSGGVDSSTAAALLAGEGHEVIGVTMRVADYSDAARGR-SCCAPDDVEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  YV + E RFR  VI  F   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGAK- 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R           RR +    D  +DQSYFL+   Q  L D+ FP+G + K +V
Sbjct: 119 LATGHYARVEER-----GGRRRLLTAADPAKDQSYFLYGLGQDALGDVLFPVGALAKPAV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +A+K DSQ+ICFV  G   D V          G+IV   G++LGRH+G+ 
Sbjct: 174 RAEAARAGLAVAEKPDSQEICFVTLGDAGDFVALRAPARVRPGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV LD  ++RV+VG  E     R  +RE  W+       AV
Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLDAAAARVVVGSAEEASRDRFEVREATWVSGAPPGGAV 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +  V+ R   +   V  +    G  V   +   GVA GQA VFY  D     V+GG
Sbjct: 294 E--LRVKVRHRHEGERGTVRARAGGAGAEVRLARPVRGVAPGQAAVFYDGDE----VVGG 347

Query: 381 GIIS 384
           G I+
Sbjct: 348 GRIA 351


>gi|24214187|ref|NP_711668.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|59799068|sp|Q8F625|MNMA_LEPIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24195088|gb|AAN48686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 375

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 13/381 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           +++VAMSGGVDS+V A LL  DGY+VIGV L+   Y +      K SCC+ +D+ DAR V
Sbjct: 5   KIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + LG D
Sbjct: 65  GISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGID 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  +G+R  I    +D+ ++Q+Y+L+  +Q+ L ++ FPLG+M K  
Sbjct: 125 KIATGHYAR----IARNGERYAI-ANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +AR MGL +ADKS+SQ+ICF+ +  Y   +++ N      G     +G+I+G+H G 
Sbjct: 180 VRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKNVEFT-PGFFKLKDGRIVGKHKGR 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            N+TIGQR+GLG+A   PL+V+ ++ + S VI+G           + ++N+ G     + 
Sbjct: 239 ENFTIGQRKGLGIAWKNPLYVISIEDDGS-VILGEENETYNESFSVIDLNFQGLAPLNEG 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
             +  +C V++R    P+   + +  +G+ V   +   GV  GQ+ VFY  DS+   +L 
Sbjct: 298 --ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLL 353

Query: 380 GGIISGSKRSDAVEESLLSVI 400
           GGIIS       + E  +SV+
Sbjct: 354 GGIISKGSIQMRIVEPAISVL 374


>gi|225573524|ref|ZP_03782279.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039121|gb|EEG49367.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM
           10507]
          Length = 362

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 211/365 (57%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80
           RVV+ MSGGVDSSV A LLK+ GY+V+GVT++ +    +++   G   + + + DA+ V 
Sbjct: 5   RVVIGMSGGVDSSVAAYLLKKAGYEVLGVTMKTWTPVSESADDPGLGGSPEVIEDAKEVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +S+YV D++  F + V+  F   Y  G TP PCV CNR VK+  LL+  ++LGAD 
Sbjct: 65  RALGISYYVVDFQRDFSDYVVDYFTQEYLEGRTPNPCVVCNRYVKWEALLNKAKELGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+   ++G+     C      +DQ+Y L+  TQ QL     P+GD  KE +
Sbjct: 125 IATGHY--ARIVCLENGRYALKTCEVS--AKDQTYALYNLTQAQLAHTLMPVGDYNKEEI 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL +ADK DSQ+ICF+    Y + +++       +G+ V   G ++G+H GII
Sbjct: 181 REIASKIGLPVADKPDSQEICFIPDHDYANFIRQRTGKEVCQGNFVTAGGTVVGQHRGII 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GL ++MG P+FV  +   ++ V++G  + +    +   +IN++G   FE   
Sbjct: 241 HYTIGQRKGLNLSMGRPVFVTEIRPKTNEVVIGDAQEVFASALRCTKINYMGIEKFE--- 297

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +G +   KIR +    P ++++   D  V   F + +  +  GQA VFY     E  V 
Sbjct: 298 -EGMELLAKIRYNHKGAPCWIEKVLPDGDVICRFAQPQRAITPGQAVVFY----QEGYVA 352

Query: 379 GGGII 383
            GG I
Sbjct: 353 AGGTI 357


>gi|34763143|ref|ZP_00144111.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887172|gb|EAA24275.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 362

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 204/377 (54%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ + N  +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D    F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA++MG+ +  K DSQ+ICFV  GK    +     G A + G+IV 
Sbjct: 169 IFPVGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG+H G   YTIGQR+GLG++  EPL+V+  DK ++ +IVG  E L    +    
Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        ++++ +   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY   +NE  V+ GG I
Sbjct: 347 FY---NNEGNVIAGGFI 360


>gi|291296936|ref|YP_003508334.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Meiothermus ruber DSM 1279]
 gi|290471895|gb|ADD29314.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Meiothermus ruber DSM 1279]
          Length = 362

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 208/369 (56%), Gaps = 31/369 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV AALLK+ GY+VIG  ++ +   K      +CC+    Y+ARRV D
Sbjct: 4   RVLAAMSGGVDSSVSAALLKQQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARRVAD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  Y+ DY E F+  +I PF + Y  GETP PCV+CN  VKF  LL   R LG D +
Sbjct: 64  IIGIPFYLLDYREEFQEKIIDPFIAGYQQGETPNPCVNCNTRVKFDSLLKKARMLGCDYV 123

Query: 142 ATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY+ +R   LY GD  K             DQ+YFL+ T ++ +  + FP+G ++K 
Sbjct: 124 ATGHYVINRDGGLYRGDPKK-------------DQTYFLWGTPKEAIPHMLFPVGHLEKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR LA + GL  A K +SQ+ICFV QG   D + +  +  A  G ++ L  GQ +G HN
Sbjct: 171 QVRALAEQFGLPTAKKPESQNICFV-QGDLKDFLAQHLS--ARPGPLIDLETGQQIGEHN 227

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQ++GLG+       +VV ++  ++ VIVGPRE+     + +RE+N     L 
Sbjct: 228 GAQFYTVGQKKGLGLWKSHLERYVVQVNTTTNEVIVGPREACMWGGLEIREVN-----LL 282

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            +A     +  V++R    PVP  V+  + G + +   + +  V  GQ+ V Y  +    
Sbjct: 283 VEAQDLPERLEVQVRYRTRPVPARVEAMEAGRMVIRLAEPQFAVTPGQSAVLYQGE---- 338

Query: 376 RVLGGGIIS 384
           R+LGGG I+
Sbjct: 339 RLLGGGFIT 347


>gi|205822073|sp|A7NK07|MNMA_ROSCS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 215/375 (57%), Gaps = 20/375 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++AMSGGVDSS+ AALL   G+DV GVTL L+        +  CC+ +    ARRVC 
Sbjct: 3   KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YVF+Y+  FR +VI  F   YA+G TP PC++CNR +KF  LL+  R LG D +
Sbjct: 63  QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 122

Query: 142 ATGHYIRSRL---------YVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ATGHY R R+             +G +R +  + R +D E+DQSY L+   Q  L  L F
Sbjct: 123 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 182

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           P+G+  K  VR LA   GL  A++ +SQDICFV  G Y ++++         G I+ L G
Sbjct: 183 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 242

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           + +GRH G+  YTIGQRRGLG+A G+P++V+ LD   + VIVGP  +L    +    + +
Sbjct: 243 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 302

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +  G + +A    F C  +IR+  D VP  V     + V V FE  +  +  GQA VFY 
Sbjct: 303 V-SGSWPEAP---FDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFY- 357

Query: 370 SDSNEARVLGGGIIS 384
              + A VLGGG I+
Sbjct: 358 ---DGAVVLGGGRIA 369


>gi|28211134|ref|NP_782078.1| tRNA-specific 2-thiouridylase MnmA [Clostridium tetani E88]
 gi|75542384|sp|Q894S7|MNMA2_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|28203574|gb|AAO36015.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Clostridium tetani E88]
          Length = 358

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 210/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80
           +V+V MSGGVDSSV A LLK  GY+VIG T+Q++   K   +R+G CC+   V DARRV 
Sbjct: 7   KVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQDDKEFIEREGGCCSLSAVADARRVA 66

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +  YV ++++ F+  VI  F   Y  G TP PCV CN+ +KFS  L     LG D 
Sbjct: 67  NKIGIPFYVMNFKDAFKKNVIDYFVDEYMEGRTPNPCVACNKFIKFSSFLDKAMTLGIDY 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK  +
Sbjct: 127 VATGHYA-----IIEKQNNRYIVRKSEDDKKDQTYALYNLTQFQLERTLMPCGRYKKSEI 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+++GL + +K DSQ+ICF+    +   +K        +G+ V  +G +LG H GI+
Sbjct: 182 REIAKKIGLRVHNKKDSQEICFIPDNDHGKYIKNRFPSKVRQGNFVDKSGNVLGTHKGIV 241

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319
            YTIGQR+GL +A+G+P++VV ++   + V++G  + L    +  +++N++  D L E  
Sbjct: 242 YYTIGQRKGLDIALGKPMYVVDINPFRNEVVLGNLDDLLNTELIAKDVNYIPFDNLKEPM 301

Query: 320 VVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+      KIR SQ P   V     +D V V+F + +  +  GQ+ VFY  D     ++
Sbjct: 302 EVEA-----KIRYSQIPSKAVITPMENDKVKVNFTEKQRAITKGQSVVFYKGD----LLI 352

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 353 GGGIIE 358


>gi|296328692|ref|ZP_06871209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154291|gb|EFG95092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 362

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 203/377 (53%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D N  ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LKFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HY+ D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKNKLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK    +     G A + G+IV 
Sbjct: 169 IFPVGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG+H G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    
Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        ++++ D   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY +D N   V+ GG I
Sbjct: 347 FYNNDGN---VIAGGFI 360


>gi|310780562|ref|YP_003968894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
 gi|309749885|gb|ADO84546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
          Length = 376

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/358 (39%), Positives = 205/358 (57%), Gaps = 23/358 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQDVYDARRV 79
           V V MSGGVDSS VA +LK+ GY+VIG+T++ +   +         +CC+  D+YDA+RV
Sbjct: 23  VAVGMSGGVDSSTVAYMLKKQGYNVIGITMKHWSGMDELSEDSNSKTCCSLDDIYDAKRV 82

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD +++ HYV + +E F+  V+  F   Y  G TP PC+ CNR +K   LL    ++GAD
Sbjct: 83  CDDLDIPHYVINLKEPFKEKVVDYFIEEYEKGRTPNPCMVCNRYIKLGKLLEYGIKMGAD 142

Query: 140 VLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +ATGHY + +   LY+GDD K            +DQ YFL    ++ L  L FP+GD++
Sbjct: 143 FVATGHYAKIKNGNLYMGDDPK------------KDQVYFLSQVKRENLKYLMFPVGDLE 190

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-IALEGDIVHLNGQILGR 255
           K  VR +A  +G+ +  K DSQ++CF++ GK  + +  +  G +  EGDIV  +G++LG+
Sbjct: 191 KPQVRKIAEYLGVRVYAKRDSQEVCFIEDGKLKEFLVDMTDGRVEKEGDIVTKDGKVLGK 250

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GLG+    PL+V+ LD   +RVIVG  E L  + ++   IN L    
Sbjct: 251 HKGFAFYTIGQRKGLGIQHETPLYVLKLDSKKNRVIVGGNEDLFKNELFADSINVLSFDK 310

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV-GVASGQACVFYTSD 371
            ED  +DG +C  K RS        V+   D+ + V F  ++V  V  GQ  V Y  D
Sbjct: 311 IED--IDGIECQAKTRSRDILHLCKVEVIKDNLIKVKFLDNKVRAVTPGQGLVLYDFD 366


>gi|85860332|ref|YP_462534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
 gi|123517346|sp|Q2LWA6|MNMA1_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|85723423|gb|ABC78366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
          Length = 372

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 200/363 (55%), Gaps = 19/363 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++A+SGGVDSSV A LLK +GY+V GVT+ L    +  + K  CC  + + DAR VC+
Sbjct: 22  RVLLAISGGVDSSVAALLLKEEGYEVAGVTMCL--GVREEENKVRCCGREAIEDARGVCE 79

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV DY       VI  F   Y  G TP PC+DCNR +KF  LL   R +G D L
Sbjct: 80  ILGIPHYVLDYAPLLETCVIDKFVREYRLGRTPNPCIDCNRYLKFGHLLDSARTMGFDYL 139

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      +  + R I+ +  DL +DQ+YFL+      L  + FPL D  K+ VR
Sbjct: 140 ATGHYAKI-----ERKESRWILKKAKDLVKDQTYFLYPIPVAALEHILFPLADRTKDEVR 194

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR+  L IA+K +SQD+CFV Q  Y D ++     +   G IV  +G++LG H+G + 
Sbjct: 195 EIARQALLPIAEKPESQDLCFVTQDSYRDFLQEQGCPVH-PGPIVDRSGRVLGEHSGTVF 253

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR GLG++   PL+VV +D   + VIV  +E +    +   E+NWL     ++A  
Sbjct: 254 YTIGQRHGLGISSPFPLYVVAIDVAGNSVIVSGKEDVYAQGLVAGEMNWLTPERPQEAE- 312

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                  +IR  +      +    D + V F + +  V  GQA V Y  D     VLGGG
Sbjct: 313 ------ARIRHRKRTCSCRIVPEGDRIRVYFAEDQDAVTPGQAVVLYQEDE----VLGGG 362

Query: 382 IIS 384
           +I 
Sbjct: 363 VIE 365


>gi|295130676|ref|YP_003581339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK137]
 gi|291375276|gb|ADD99130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK137]
          Length = 366

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 120 DAVATGHYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKM 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257
           +VR  A  +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HN
Sbjct: 175 NVRQEAAALGLSVADKPDSNDICFIPDG---DTRGWLSEKIGSADGEIRDESGALVGHHN 231

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  ++TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W   
Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D  
Sbjct: 290 ---SSEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD-- 344

Query: 374 EARVLGGGIISGSKRS 389
              V+G   I G+ R+
Sbjct: 345 --LVVGSATICGTDRA 358


>gi|237741734|ref|ZP_04572215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|294785652|ref|ZP_06750940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
 gi|229429382|gb|EEO39594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|294487366|gb|EFG34728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
          Length = 362

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 205/377 (54%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ + N  +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D    F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA++MG+ +  K DSQ+ICFV  GK    +     G A + G+IV 
Sbjct: 169 IFPVGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG+H G   YTIGQR+GLG++  EPL+V+  DK ++ +IVG  E L    +    
Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        ++++++   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDENNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY   ++E  V+ GG I
Sbjct: 347 FY---NDEGNVIAGGFI 360


>gi|160944760|ref|ZP_02091987.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443944|gb|EDP20948.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii
           M21/2]
          Length = 367

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 204/371 (54%), Gaps = 13/371 (3%)

Query: 16  KNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDV 73
           +NP +  R ++AMSGGVDSSV A L+++ GYD  G+T++L +N         +CC+ +D+
Sbjct: 4   QNPANRPRALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKDI 63

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V   +++ + V D+   FR  +I  F   Y AG TP PC+DCN+ +KF  LL   
Sbjct: 64  EDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDWA 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G + + TGHY R      D    R ++ + +D  +DQSY L+  TQ+QL  +R PLG
Sbjct: 124 EEHGMEYVVTGHYARVEQ---DAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLG 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K  VR++A+E     A K DSQDICFV  G Y   +++        GD +  +G+++
Sbjct: 181 ALHKTEVREIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKVV 240

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+G + YT+GQR+GLG+A+G P++V   D  ++ V VGP   L    +Y  ++NW+  
Sbjct: 241 GTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDSIVYAEDVNWIAI 300

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A+    +   + R  Q      V   ++G  ++F++ +     GQA V Y  D  
Sbjct: 301 ----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV- 355

Query: 374 EARVLGGGIIS 384
              VLGGG I+
Sbjct: 356 ---VLGGGTIT 363


>gi|266623735|ref|ZP_06116670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium hathewayi DSM 13479]
 gi|288864455|gb|EFC96753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium hathewayi DSM 13479]
          Length = 369

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 203/366 (55%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    +  G CC    V DARRV
Sbjct: 15  KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEETEVQEESGGCCGLSAVDDARRV 74

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV +++E FR  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 75  AWDLGIPYYVMNFKEEFRENVIDYFVDEYRNGRTPNPCIACNRYVKWESLLKRSLDIGAD 134

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+   ++G  R  +   +   +DQ+Y L+  TQ QL     P+G   K+ 
Sbjct: 135 YIATGHY--ARIEQLENG--RYALKMSVTAAKDQTYALYNLTQYQLAHTLMPVGAYSKDQ 190

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A  + L +A K DSQ+ICF+    Y   ++        +G+ V L+G +LGRH GI
Sbjct: 191 IREIADRINLKVAHKPDSQEICFIPDHDYARFIEENTGKEPAKGNFVDLDGNVLGRHEGI 250

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318
            +YT+GQR+GL ++MG P+FV  +   ++ V++G    +    +    INW+  DGL   
Sbjct: 251 THYTVGQRKGLNLSMGHPVFVTEIRPETNEVVIGNSADVFSDTLRCSRINWMAIDGLHGG 310

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S    P  ++   +D V   F++ +  +  GQA VFY     E  V
Sbjct: 311 EM----RVTAKIRYSHKGAPCTIREVGEDLVECRFDEPQRAITPGQAVVFYL----ENYV 362

Query: 378 LGGGII 383
            GGG I
Sbjct: 363 AGGGTI 368


>gi|198282965|ref|YP_002219286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666259|ref|YP_002425168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|259495823|sp|B7J5X6|MNMA_ACIF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|259495824|sp|B5ENY8|MNMA_ACIF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|198247486|gb|ACH83079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518472|gb|ACK79058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 352

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 209/370 (56%), Gaps = 22/370 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D + ++A+SGGVDS+V A L++  GY++ GVT++L+        +  CC  +D+ DA  +
Sbjct: 3   DKKALIALSGGVDSAVAALLMQGQGYELTGVTMRLWP-------RSRCCDEKDIEDAAEI 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  + + + V DY E FR  V+  F + Y AG TP PC  CN+ +KF  LL+   +LGA 
Sbjct: 56  CARLGIPYTVLDYREAFRRQVVDVFVAEYQAGRTPNPCARCNQFLKFDALLAEGEKLGAT 115

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LATGHY  +RL     G     + R  D  +DQSYFLFA     L  LRFP+G M K+ 
Sbjct: 116 MLATGHY--ARLAETSSGT---ALLRGRDHAKDQSYFLFAIGAGILSRLRFPVGGMNKDE 170

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQILGRHN 257
           VR +AR+ GL +A K DSQDICFV  G Y   ++   AG+  A EG++V  +GQ+LG H 
Sbjct: 171 VRAMARKHGLPVAAKQDSQDICFVPDGDYRRFLEDY-AGLDMAQEGEMVDSSGQVLGHHP 229

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G +++T+GQR+GLG    +P +V+ LD   +RVIVG  + L    + L E NWL D    
Sbjct: 230 GTLHFTVGQRKGLGGGSDQPRYVLALDPAQNRVIVGGEDELYRGVVSLAECNWLTD--LS 287

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                     ++ RS  +   + +  +D    + F + +  V  GQA V Y  +    R+
Sbjct: 288 PGETHAVTVKLRYRSRAESAMLHLL-SDARAELRFREPQRAVTPGQAAVCYQGE----RL 342

Query: 378 LGGGIISGSK 387
           LGGG I G++
Sbjct: 343 LGGGWIQGTE 352


>gi|294783011|ref|ZP_06748335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479889|gb|EFG27666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 362

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 211/387 (54%), Gaps = 38/387 (9%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           V SE ++    D DK  K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    + 
Sbjct: 7   VASEFSKYIEFDSDK--KGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS- 63

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                        DA++VC  + + HYV D  + F+  V+  F + Y  G TP PC+ CN
Sbjct: 64  -------------DAKKVCGDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCN 110

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           R +KF  +L      GA  +ATGHY + +   L VGDD              +DQ YFL 
Sbjct: 111 RHIKFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLS 158

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
              + +L  + FP+GD++K  +R+LA+++G+ +  K DSQ+ICFV  GK  + +     G
Sbjct: 159 QIQKDRLSKIIFPVGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKG 218

Query: 239 IALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
            A + G+I+  NG+ILG+H G   YTIGQR+GLG++  EPL+V+  DK+++ +IVG  E 
Sbjct: 219 KAEKPGNIIDKNGKILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENED 278

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           L    +    +N       E   +D  +CF K RS        +++N D   V F  ++V
Sbjct: 279 LFKDELTATRLNLFSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKV 336

Query: 358 -GVASGQACVFYTSDSNEARVLGGGII 383
             +  GQ  VFY +D N   V+ GG I
Sbjct: 337 RAITPGQGIVFYNNDGN---VIAGGFI 360


>gi|239626056|ref|ZP_04669087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239520286|gb|EEQ60152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 358

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 207/367 (56%), Gaps = 18/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        + +G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQDEDTDVQEAEGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV +++E FR  V+  F   Y AG TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AMDLGIPYYVMNFKEEFRTNVMDYFVGEYVAGRTPNPCIACNRYVKWESLLRRSMAIGAD 123

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY +  +L  G     R  +   +  ++DQ+Y L+  TQ+QL     P+G   K+
Sbjct: 124 YIATGHYAQICQLPSG-----RYALKTSVTAQKDQTYALYNLTQEQLARTLMPVGSYHKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A ++GL +A K DSQ+ICF+    +   ++        EG+ V L G +LG+H G
Sbjct: 179 EIRRMAEDIGLQVAHKPDSQEICFIPDHDHARFIEAYTGMQVPEGNFVDLEGNVLGKHKG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317
           I +YTIGQR+GL ++MG P+FVV +   ++ V++G  + +  + +   ++NW+  DGL  
Sbjct: 239 ISHYTIGQRKGLNLSMGHPVFVVEIRPETNEVVIGEGKDVFTNVLCCDKLNWMAIDGLHG 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +++    +   KIR S    P  ++    G V   F +       GQA VFY  D     
Sbjct: 299 ESM----EVTAKIRYSHKGSPCTIREIGRGLVECRFHEPVRAATPGQAVVFYDGD----Y 350

Query: 377 VLGGGII 383
           V GGG I
Sbjct: 351 VAGGGTI 357


>gi|119486285|ref|ZP_01620344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lyngbya sp. PCC 8106]
 gi|119456498|gb|EAW37628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lyngbya sp. PCC 8106]
          Length = 352

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 207/368 (56%), Gaps = 26/368 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  AA+L    Y+V+G+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSAAAAILHHQDYEVVGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADV 140
            + V H++ D  E F+  ++      Y+AG TPLPC  CN+TVKF  +L     +LG D+
Sbjct: 56  QLGVPHHIVDSRELFQTHIVDYLVEGYSAGITPLPCSQCNKTVKFGPMLRHAKEELGIDL 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+   R  + R +D  +DQSYFL+  TQ  L  + FPLG++ K   
Sbjct: 116 IATGHYARIRY---DEQNNRYQLLRAVDKSKDQSYFLYDLTQDLLAGVVFPLGEVLKTET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A +  L  ADK +SQD+C V+  G     + +   G    GDIV  NG++LG+H GI
Sbjct: 173 RRIAAQYNLKTADKPESQDLCLVEANGSMQAFLDKYITGKT--GDIVDENGKVLGQHEGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A   PL+V+ +D   + VIVG RE+       ++ +NW+        
Sbjct: 231 HHYTIGQRKGLGIAAPNPLYVIGIDAGRNLVIVGDRENATQTECIIKRVNWVSIAPPTSP 290

Query: 320 VVDGFKCFVKIRSSQDPVPVFV----QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +  V+IR    P PV V       D+ V + F++   G+  GQA V+Y  +    
Sbjct: 291 I----RAEVQIRYRTKPQPVTVVPLNSAEDEQVKLIFDEPIFGITPGQAAVWYDGEI--- 343

Query: 376 RVLGGGII 383
            VLGGGII
Sbjct: 344 -VLGGGII 350


>gi|120403098|ref|YP_952927.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166235070|sp|A1T6X1|MNMA_MYCVP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119955916|gb|ABM12921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 357

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 206/374 (55%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  SYA GETP PCV CN  +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALSARALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+ RR     +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DALATGHYARLT-----DGRLRRA----VDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
           ++R+ A   GL +ADK+DS DICF+  G   D    + A I +  G +V   G +L  H+
Sbjct: 171 AIREEAARRGLAVADKADSHDICFIPSG---DTRAFLGARIGVRRGSVVDATGAVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G P +V  +D  +  V VG    LEV  + L E      
Sbjct: 228 GVHGFTIGQRKGLGIPGPGPDGRPRYVTGIDAETGTVHVGDVTDLEVTSL-LGEAPVFTS 286

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           G+  DA V+   C V++R+    V    +  D  + V       GVA GQ  V Y SD +
Sbjct: 287 GVAPDAPVE---CAVQVRAHGGVVDAVAELRDGALEVSLRTPLRGVAPGQTLVLYRSDPD 343

Query: 374 EARVLGGGIISGSK 387
              VLG   IS ++
Sbjct: 344 GDEVLGSATISAAR 357


>gi|167772092|ref|ZP_02444145.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM
           17241]
 gi|167665890|gb|EDS10020.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM
           17241]
          Length = 349

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 196/362 (54%), Gaps = 22/362 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSSV A LLKR GY+V G T +L+N           C   +V DAR VCD 
Sbjct: 5   VLVAMSGGVDSSVAALLLKRQGYEVAGATFELFNG----------CPEGNVRDARAVCDC 54

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYVFDY   F+  V+  F  SY  G+TP PCV CNR+VKF   L    +LG   ++
Sbjct: 55  LGIRHYVFDYRALFQKRVLEHFVDSYLTGKTPNPCVACNRSVKFGAFLQDAMRLGYTHIS 114

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY        D    R  + R     +DQSY L+  +Q+QL  L  P+    K+ VR 
Sbjct: 115 TGHYAGVAY---DQTAGRYCLQRSRQTRKDQSYVLYHLSQEQLSRLLLPVDGYTKDEVRA 171

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
            A E GL +  K+DSQDICFV  G Y   ++R     +  G+ +   G+++GRH G+++Y
Sbjct: 172 FAAEAGLPVQAKADSQDICFVPDGDYAAFIERYTGQASEPGNFIDDEGRVIGRHRGVLHY 231

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLGVA G   +V  LD  ++ V +    S+   ++   ++  +   + E  +  
Sbjct: 232 TIGQRRGLGVAFGTHRYVRRLDPGANTVTLSDESSVFCDQLIADDLRLIAFDVLETPL-- 289

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   KIR +  P P  +   D+G ++V F+  +  +  GQA VFY  D    RVLGG 
Sbjct: 290 --RACAKIRYAHTPAPATITMLDEGRIHVRFDTPQRAITPGQAVVFYDDD----RVLGGA 343

Query: 382 II 383
            I
Sbjct: 344 TI 345


>gi|323141806|ref|ZP_08076673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413729|gb|EFY04581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 357

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 206/364 (56%), Gaps = 13/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A ++    Y+  GVT++L+ N      +  SCC+  DV DAR V 
Sbjct: 4   KALIAMSGGVDSSVSALMMLEQDYECTGVTMKLFANEDIGVSKANSCCSIDDVADARSVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ + +YVF++ +RF   VI  F  +Y  G TP PC+DCNR +KF  L    ++LG D 
Sbjct: 64  TSLGMLYYVFNFADRFERDVIDRFVDAYVNGRTPNPCIDCNRYLKFDQLFVRAQELGCDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY +      D+ K R ++ + +D  +DQSY L+A TQ+QL    FPLG + K  V
Sbjct: 124 VVTGHYAQISY---DEAKGRYLLRKAVDPLKDQSYVLYALTQEQLAHAMFPLGGLYKTQV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A + G   A K DSQDICF+Q G Y D ++         G+ V   G +LGRH GII
Sbjct: 181 REIAEKHGFVNAQKHDSQDICFIQTGTYADFIEARLGRKFNPGNFVDEAGNVLGRHKGII 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YT+GQR+GLG+A+ +P++V  +D  ++ VI+   E L    +  + IN +      DA+
Sbjct: 241 HYTVGQRKGLGLALPQPMYVKEIDTKNNAVILTTNEGLFTKNVTAKNINLID----CDAI 296

Query: 321 VDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   +IR   Q+      Q + D + + F+  +  +  GQ+ V Y  D     V+G
Sbjct: 297 TEPRRVKARIRYHQQEQWATVTQPDADTLQLVFDDPQRAITKGQSVVMYDGDV----VVG 352

Query: 380 GGII 383
           GG I
Sbjct: 353 GGTI 356


>gi|314923325|gb|EFS87156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL001PA1]
          Length = 396

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 215/381 (56%), Gaps = 25/381 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           ++V+ AMSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 31  VKVLAAMSGGVDSAVAAARLVETGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 89

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 90  AADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 149

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 150 DAVATGHYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKV 204

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
           +VR  A  +GL +ADK DS DICF+  G   D    ++  I L +G+I   +G ++G HN
Sbjct: 205 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGLADGEIRDESGALVGHHN 261

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  ++TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I +    W   
Sbjct: 262 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEVIRPVWC-- 319

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D  
Sbjct: 320 ---SGEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD-- 374

Query: 374 EARVLGGGIISGSKRSDAVEE 394
              V+G   I G+ R+    E
Sbjct: 375 --LVVGSATICGTDRAGVKAE 393


>gi|260494072|ref|ZP_05814203.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
 gi|260198218|gb|EEW95734.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
          Length = 362

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 206/377 (54%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F S Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIQKDRLNKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK  + +     G A + G+IV 
Sbjct: 169 IFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKTGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G ILGRH G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    
Sbjct: 229 KDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDELIATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        ++++ D   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY   ++E  V+ GG I
Sbjct: 347 FY---NDEGNVIAGGFI 360


>gi|312898012|ref|ZP_07757421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera micronuciformis F0359]
 gi|310620937|gb|EFQ04488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera micronuciformis F0359]
          Length = 358

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 200/366 (54%), Gaps = 16/366 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARRV 79
           + VAMSGGVDSSV A LLK  GY+VIG+TL+L+    A K +    +CC+   V DA+ V
Sbjct: 5   IAVAMSGGVDSSVTAGLLKEQGYEVIGITLRLWEEEPACKVERNIHACCSLDSVNDAKAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HY  D+ + FR+ VI  F  SYA G+TP PC+ CNR +KF  L    +Q GAD
Sbjct: 65  ADVLGIRHYTLDFRDVFRHDVIDYFIDSYAHGKTPNPCIACNRFIKFGLLWDQAQQFGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LATGHY R    V D+ ++   + R  D  +DQSY L+  TQ  L  + FP+ D++K  
Sbjct: 125 LLATGHYAR---IVYDNERKIYTLRRGKDERKDQSYVLYQLTQDLLKHIIFPMADLEKTK 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R+LA+E GL + +K +SQDICF+    Y   +K+    I   G      G+ +G H GI
Sbjct: 182 TRELAKEWGLPVFNKPESQDICFIPDNDYKGFLKKEAPYIFKAGRFTDGQGRTVGTHKGI 241

Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             YTIGQRR       G P +VV LD+ ++ V VG    L    I   ++ W      E 
Sbjct: 242 AAYTIGQRRGLNLGGPGGPYYVVSLDEKNNEVRVGSERELFSAEIKAHDVTWT-----ET 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              + FK + KIR +    P  V    + + V F+K +    +GQA V Y  D    RVL
Sbjct: 297 VREEPFKAYGKIRYAAQAAPCTVYPAGNEMKVVFDKPQRAATAGQALVLYEDD----RVL 352

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 353 GGGTIT 358


>gi|256845062|ref|ZP_05550520.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|256718621|gb|EEU32176.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
          Length = 362

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 204/377 (54%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ + N  +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D    F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA+++G+ +  K DSQ+ICFV  GK    +     G A + G+IV 
Sbjct: 169 IFPVGDLEKTKLRELAKQIGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG+H G   YTIGQR+GLG++  EPL+V+  DK ++ +IVG  E L    +    
Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        ++++ +   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY   +NE  V+ GG I
Sbjct: 347 FY---NNEGNVIAGGFI 360


>gi|153953713|ref|YP_001394478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium kluyveri DSM 555]
 gi|219854333|ref|YP_002471455.1| hypothetical protein CKR_0990 [Clostridium kluyveri NBRC 12016]
 gi|205813712|sp|A5N749|MNMA_CLOK5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146346594|gb|EDK33130.1| TrmU [Clostridium kluyveri DSM 555]
 gi|219568057|dbj|BAH06041.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 356

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 207/364 (56%), Gaps = 15/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80
           +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++      +  +  CC+   V DA+ V 
Sbjct: 4   KVVVGMSGGVDSSVAAHLLKEQGYEVIGVTMQVWQEDDYYEDMESGCCSLSAVEDAKMVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+ HYV +++E F+  VI  F   Y  G+TP PC+ CN+ +KF +LL     LGAD 
Sbjct: 64  YHLNIPHYVMNFKEAFKKNVIDYFIQEYMEGKTPNPCIACNKYIKFDELLKRAMDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      + D    R  + +  D  +DQ+Y L+  TQ QL     P G  KKE +
Sbjct: 124 VATGHYATVEK-IND----RYTLRKSKDHNKDQTYALYNLTQFQLAHTLMPCGIYKKEEI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++ARE+GL +  K DS++ICF+    +   +KRI      EG+ +   G +LG+H GI+
Sbjct: 179 REIAREIGLMVHSKRDSEEICFIPDNDHGAYIKRITKDKVKEGNFIDKEGNVLGKHKGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG++ G P +V+ +   ++ V++G  E +    +  +++N+L    FE+ +
Sbjct: 239 YYTLGQRKGLGLSFGVPTYVIDIKPYTNEVVLGSEEDIFKTDLVAKDVNFLP---FEN-L 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K   KIR S  P    +   +++ + V F   +  +  GQ+ VFY  +     ++G
Sbjct: 295 TSPMKVEAKIRYSSKPAEATISCLDEERIKVKFTDRQRAITKGQSVVFYKDNI----LIG 350

Query: 380 GGII 383
           GGII
Sbjct: 351 GGII 354


>gi|328907390|gb|EGG27156.1| tRNA-specific 2-thiouridylase MnmA [Propionibacterium sp. P08]
          Length = 366

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 212/381 (55%), Gaps = 25/381 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGG+DS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 1   MKVLAAMSGGIDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADRLGIPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGY 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 120 DAVATGHYAQAKVI---DGVTK--LYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257
            VR  A  +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++GRHN
Sbjct: 175 DVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGRHN 231

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L V+ I      W   
Sbjct: 232 GYHRFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                   D +   V++R+  DPVP  V     GV V+ E    GVA GQA VFY  D  
Sbjct: 290 ---SGEPADTWHGQVQVRAHGDPVPATVSTVPSGVSVELEDPLRGVAPGQAAVFYDGD-- 344

Query: 374 EARVLGGGIISGSKRSDAVEE 394
              V+G   I G+ R+    E
Sbjct: 345 --LVVGSATICGTDRAGTTAE 363


>gi|282853930|ref|ZP_06263267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J139]
 gi|282583383|gb|EFB88763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J139]
          Length = 366

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 120 DAVATGHYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKV 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257
           +VR  A  +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HN
Sbjct: 175 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHN 231

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  ++TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W   
Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D  
Sbjct: 290 ---SGEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD-- 344

Query: 374 EARVLGGGIISGSKRS 389
              V+G   I G+ R+
Sbjct: 345 --LVVGSATICGTDRA 358


>gi|163815111|ref|ZP_02206492.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759]
 gi|158449520|gb|EDP26515.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759]
          Length = 363

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 210/378 (55%), Gaps = 19/378 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGS 66
           +  +D DK      V V MSGGVDSSV A LLK  GY+VIGVT+Q++    R        
Sbjct: 1   MKLIDTDKK----TVCVGMSGGVDSSVAALLLKEQGYNVIGVTMQIWQDEDRDVVSAHAG 56

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC    V DARRV   +++ +YV +++E F+  VI  F   Y  G TP PC+ CNR VK+
Sbjct: 57  CCGLSAVDDARRVASQLDIPYYVMNFKEEFKKYVIDYFVDEYKHGRTPNPCIACNRYVKW 116

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             LL+    +G D +ATGHY  +R+    +G+      R +D  +DQ+Y L+  TQ+QL 
Sbjct: 117 ESLLTRCMAIGGDYIATGHY--ARIIQLPNGRYTLQEARGID--KDQTYALYNLTQEQLA 172

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
               P+G+  K  +R +A + GL +A K DSQDICFV  G Y   ++      A+ GD V
Sbjct: 173 RTLMPVGEYSKPEIRKIAEDHGLMVAHKPDSQDICFVPDGDYAGYLENEAGLKAVPGDFV 232

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            ++G ++GRH GII+YTIGQR+GLG+AMG P+FVV +   +++V++G    +   R+   
Sbjct: 233 DIHGNVIGRHKGIIHYTIGQRKGLGLAMGHPVFVVDIIPETNQVVIGENGDVFSERLTCN 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
            +N++        + +      KIR +       +++ ++D V   F++    V  GQA 
Sbjct: 293 RLNFMSIA----DLTEPMHVKAKIRYNHKGSMCTIRKIDEDLVEAVFDEPVRAVTKGQAV 348

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D     VLGGG I
Sbjct: 349 VFYECD----HVLGGGSI 362


>gi|313113898|ref|ZP_07799457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623777|gb|EFQ07173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 367

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 198/364 (54%), Gaps = 12/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           R ++AMSGGVDSSV A L+++ GYD  G+T++L  N         +CC+ +D+ DA  V 
Sbjct: 11  RALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSEKDIEDAAEVA 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++ + V D+   FR  +I  F   Y AG TP PC+DCN+ +KF  LL   R  G + 
Sbjct: 71  YAMDIPYEVLDFTADFREQIIEKFVRVYEAGGTPNPCIDCNKYMKFRHLLDWARAHGMEY 130

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R      D+   R ++ + +D  +DQSY L+  TQ+QL  +R PLG + K  V
Sbjct: 131 VVTGHYARVEQ---DEATGRFLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLGGLHKTEV 187

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A +     A K DSQDICFV  G Y   ++         GD +  +G+++G HNG +
Sbjct: 188 REIAEQHKFVNARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDESGRVVGPHNGAV 247

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+AMG P++V   D  ++ V VGP E L    +Y  E+NW+        +
Sbjct: 248 RYTIGQRKGLGLAMGAPVYVCGKDMQANTVTVGPEEMLFDRIVYADEVNWIAI----PEL 303

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +   + R  Q      V   + G  ++F++ +     GQA V Y  D+    VLGG
Sbjct: 304 TGPLRVTARTRYHQVEQAATVYPAECGFRLEFDQPQRAPTPGQAVVLYQGDT----VLGG 359

Query: 381 GIIS 384
           G I+
Sbjct: 360 GTIT 363


>gi|188586399|ref|YP_001917944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205816905|sp|B2A5K1|MNMA_NATTJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|179351086|gb|ACB85356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 368

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 205/367 (55%), Gaps = 16/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDAR 77
           RV+VAMSGGVDSSV A +LK  GY+VIG  ++++    +     +    CC+   V+DA+
Sbjct: 6   RVLVAMSGGVDSSVAALMLKEQGYEVIGAHMRIWYREEDEELYEQNVKGCCSLAAVHDAK 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D I +  YV +++E F + V+  F   Y  G TP PC+ CNR +K+ + L     L 
Sbjct: 66  RVADKIGIPFYVLNFKEPFYDWVVKNFIDEYLQGRTPNPCIACNRFIKWEEFLKRAMALE 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY +    V D+ K R ++ R  D  +DQSY L   TQ+QL    FPLGD  K
Sbjct: 126 CDYIATGHYSK---IVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLARTLFPLGDYYK 182

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR++A +  L +ADK DSQ+ICFV    Y + ++ +       G I+   G  LG H 
Sbjct: 183 EDVRNIAEQNELGVADKPDSQEICFVPNNDYGEFLQSVVPEHINPGPILDAQGNKLGEHK 242

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGLG+++G P++V+ +D +++ +IVG +E L    +   EIN +     E
Sbjct: 243 GIAFYTIGQRRGLGISLGRPVYVIDIDADNNALIVGDKEELYSDGLIAEEINLIPYEQIE 302

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +++    +C  KIR +   V   +Q   +D + V F +    V  GQ   FY  D     
Sbjct: 303 NSI--DIEC--KIRYNSRNVSSTLQPYGNDQLLVKFNQPVEAVTPGQGVTFYQDD----L 354

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 355 VIGGGTI 361


>gi|19704100|ref|NP_603662.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81479855|sp|Q8R5X3|MNMA1_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|19714304|gb|AAL94961.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 362

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 202/377 (53%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D N  ++RV VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LKFDSNNSNIRVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HY+ D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRYIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 A  +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKDASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKNKLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK    +     G A + G+IV 
Sbjct: 169 IFPVGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG+H G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    
Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       E   +D  +CF K RS        ++++ D   V F  ++V  +  GQ  V
Sbjct: 289 LNLFSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY +D N   V+ GG I
Sbjct: 347 FYNNDGN---VIAGGFI 360


>gi|282896191|ref|ZP_06304214.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Raphidiopsis brookii D9]
 gi|281198880|gb|EFA73758.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Raphidiopsis brookii D9]
          Length = 350

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 205/372 (55%), Gaps = 37/372 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GYDVIG+TL L       K KG CC+ + + DA  +C 
Sbjct: 4   KVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCS-EGMVDAATICQ 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++ H + D  + F+  ++    S Y+AG TPLPC  CNRTVKF  +L   + +L +D 
Sbjct: 57  QLDIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLQYAKDKLQSDT 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D    R  + R  D  +DQSYFL+  +Q+ L    FPLG++ K   
Sbjct: 117 IATGHYARIAY---DHRTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKNDT 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQG--------KYFDVVKRINAGIALEGDIVHLNGQI 252
           R +A E GL  ADK +SQD+C V+          KY              GDIV  +G++
Sbjct: 174 RKIASEYGLKTADKPESQDLCLVESNGSMRAFLDKYLS---------PKPGDIVDSDGKV 224

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG+H+G+ +YTIGQR+GLG+A  EPL+V+ LD  ++ V+VG R         +  +NW+ 
Sbjct: 225 LGKHDGVHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWV- 283

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             + E       +  V+IR    PV    +    D V + F++ +  +  GQA V+Y  D
Sbjct: 284 -SMVEPRGT--IRGEVQIRYRSQPVLATIIPGEKDCVQMVFDEPQFSITPGQAAVWYEGD 340

Query: 372 SNEARVLGGGII 383
               +VLGGGII
Sbjct: 341 ----KVLGGGII 348


>gi|313674593|ref|YP_004052589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marivirga tractuosa DSM 4126]
 gi|312941291|gb|ADR20481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marivirga tractuosa DSM 4126]
          Length = 378

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 210/386 (54%), Gaps = 19/386 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+VIG+T++   Y S  +SK++  CC+   + DA
Sbjct: 3   KKGRVLVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGSSKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   HY+ D  E F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RNLAVNLGFPHYILDIREEFGDYVIDHFTDEYLAGRTPNPCVLCNTHIKWDSLLRRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY + R   G     R I+ R  DL +DQSY L+  +Q+ L     PLGD+ 
Sbjct: 123 GCDYIATGHYAKVREENG-----RYIISRGKDLNKDQSYALWGVSQESLSRTILPLGDLT 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A + G  ++ +KS+S +ICFV    Y   +KR   G+  E   G+ V  +G +
Sbjct: 178 KPEIRKMAEDKGFYELVNKSESYEICFVPDNDYRGFLKRRVEGLEEEVKGGEFVLEDGTV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G   YT+GQR+GLG+A+G P++V  + K+ +RV++G  + L    +Y++ +    
Sbjct: 238 VGTHEGYPFYTVGQRKGLGIALGYPVYVTEIQKDKNRVVLGTFDELSRDGMYVKNLVMSK 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               ED +        K+R + D  P  +++  D + V F      +A GQA VFY  D 
Sbjct: 298 YTSLEDRL----DTVTKVRYNDDGAPAVIEQVGDTMKVFFGNGVPAIAPGQAAVFYEGDD 353

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
               V+GGG I  S     ++   LS
Sbjct: 354 ----VIGGGWIHSSFNQQKLKNEALS 375


>gi|254416844|ref|ZP_05030593.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176390|gb|EDX71405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microcoleus chthonoplastes PCC 7420]
          Length = 359

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 213/374 (56%), Gaps = 25/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GY+V+G+TL L       K KG CC+ + + DA  +C+
Sbjct: 8   KVVVGLSGGVDSSVAAATLHHQGYEVVGLTLWLM------KGKGQCCS-EGMVDAAFICE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H++ D  E F+  ++    S Y +G TPLPC  CN+TVKF  +L+  R+ LG D 
Sbjct: 61  QLGIPHHIVDSREVFQANIVDYLVSGYESGITPLPCSQCNKTVKFGPMLAYARETLGIDK 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D    R  + R +D  +DQSYFL+  +Q+ L    FPLG+++K   
Sbjct: 121 IATGHYARIRY---DAKSDRYQLLRAVDSNKDQSYFLYDLSQELLAASIFPLGELEKTQT 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNGI 259
           R LA E  L  A K +SQD+C V+   +  +   ++  I+   GDIV  NG++LG+H GI
Sbjct: 178 RQLAAEYQLKTAAKPESQDLCLVE--SHGSMRTFLDQYISQTTGDIVDTNGKVLGQHQGI 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+VV +D  ++RVIVG R S       +  +NW+        
Sbjct: 236 HHYTIGQRKGLGIAAPEPLYVVAIDAGANRVIVGDRASATQPDCTVGRVNWISI----HP 291

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R    PV V V   D + + + F++ +  +  GQA V Y  +     +L
Sbjct: 292 PTTPIQASVQVRYRSHPVDVTVIPLDGNRMKLIFDQPQFSITPGQAAVLYDGE----MLL 347

Query: 379 GGGIISGSKRSDAV 392
           GGGII   +  DAV
Sbjct: 348 GGGII--ERNQDAV 359


>gi|225570688|ref|ZP_03779711.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM
           15053]
 gi|225160515|gb|EEG73134.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM
           15053]
          Length = 361

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 205/369 (55%), Gaps = 15/369 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    R   +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEERAVQEENGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++ + F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 65  AAQLGIPYYVMNFRQEFKEHVIDYFVDEYTHGRTPNPCIACNRYVKWESLLKRSMDIGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R         +R  +     D  +DQ+Y L+  TQ+QL     P+G  +KE 
Sbjct: 125 YIATGHYARIEQL---PNERYALKVSATDT-KDQTYALYNLTQEQLRRTLMPVGMYEKEE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A  +GL++A+K DSQDICFV  G Y   +++     +L G+ V  +G ++G H GI
Sbjct: 181 IRRIAGSLGLEVANKPDSQDICFVPDGDYASYIEKEAGVKSLPGNFVTSDGTVVGTHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           ++YT+GQR+GLG+++G P+FV+ +   ++ ++VG  E      +    +N++  G     
Sbjct: 241 VHYTVGQRKGLGLSLGHPVFVLDIRPGTNEIVVGSNEESMSRYVRADNVNFMSVG----G 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  + + KIR +        ++   D +   F++ +     GQA V Y  +     VL
Sbjct: 297 LPEKKRVWAKIRYNHRGAWCTAEKTGPDEIVCTFDEPQRAATPGQAVVLYDGEY----VL 352

Query: 379 GGGIISGSK 387
           GGG I G +
Sbjct: 353 GGGTIIGDE 361


>gi|268316383|ref|YP_003290102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Rhodothermus marinus DSM 4252]
 gi|262333917|gb|ACY47714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Rhodothermus marinus DSM 4252]
          Length = 382

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 201/370 (54%), Gaps = 20/370 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDARR 78
           RV+VAMSGGVDSSV AALL   GY+V+G+T++ ++   +  R G    CC+ + + DAR 
Sbjct: 6   RVLVAMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCCSLESMNDARA 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +   H++ D  E F + VI  F   Y AG TP PC+ CN  +K++ LL    +LG 
Sbjct: 66  VAVRLGFPHFIVDIREEFGDWVIERFTEEYLAGRTPNPCILCNTHIKWAALLRRADRLGC 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R    D+   R ++ R  DL +DQSY L+   Q+ L     PLGD  K 
Sbjct: 126 DYIATGHYARIRY---DESLGRYVISRGRDLNKDQSYVLWGIAQEHLARTLLPLGDYTKP 182

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
            +R +A EMG + +A K DS +ICF+    Y   +++    +  +   G  V  +G ++G
Sbjct: 183 EIRRMAAEMGFERLAQKPDSYEICFIPDNDYRRFLRQRVPDLDRKVGPGKFVLKDGTVVG 242

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-D 313
            H G   YTIGQR GLG+A+G P +V ++D  ++ + VGPRE L   R+  R+IN +   
Sbjct: 243 THRGYPFYTIGQRHGLGLALGYPAYVTHIDSETNTITVGPREELLRQRLVARQINLVKYP 302

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            L E+    G     KIR   +  P  V +  D ++V F +    +  GQA V Y  D  
Sbjct: 303 DLREERPAIG-----KIRYKDEGAPCLVWQEGDALHVAFAEPRPAITPGQAVVLYEGDD- 356

Query: 374 EARVLGGGII 383
              VL GG I
Sbjct: 357 ---VLAGGWI 363


>gi|295104304|emb|CBL01848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 367

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 202/371 (54%), Gaps = 13/371 (3%)

Query: 16  KNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDV 73
           +NP +    ++AMSGGVDSSV A L+++ GYD  G+T++L +N         +CC+ +D+
Sbjct: 4   QNPANRPHALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKDI 63

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V   +++ + V D+   FR  +I  F   Y AG TP PC+DCN+ +KF  LL   
Sbjct: 64  EDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDWA 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G + + TGHY R      D    R ++ + +D  +DQSY L+  TQ+QL  +R PLG
Sbjct: 124 EEHGMEYVVTGHYARVEQ---DAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLG 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K  VR +A+E     A K DSQDICFV  G Y   +++        GD +  +G+++
Sbjct: 181 ALHKTEVRKIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKVV 240

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+G + YT+GQR+GLG+A+G P++V   D  ++ V VGP   L    +Y  ++NW+  
Sbjct: 241 GTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDRIVYAEDVNWIAI 300

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A+    +   + R  Q      V   ++G  ++F++ +     GQA V Y  D  
Sbjct: 301 ----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV- 355

Query: 374 EARVLGGGIIS 384
              VLGGG I+
Sbjct: 356 ---VLGGGTIT 363


>gi|119512160|ref|ZP_01631251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nodularia spumigena CCY9414]
 gi|119463191|gb|EAW44137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nodularia spumigena CCY9414]
          Length = 351

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 21/364 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCS-EGMIDAADICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H V D  E F+  ++    + Y+AG TPLPC  CN+TVKF  ++   R+ L  D 
Sbjct: 56  QLGVPHEVVDIREVFQTQIVDFLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREKLDCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +      D+   R  + R +D  +DQSYFL+  +Q+ L    FPLG + K   
Sbjct: 116 IATGHYAQINY---DEATGRYQLLRAVDRNKDQSYFLYDLSQELLKATVFPLGKLDKADT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E GL  A+K +SQD+C V+  G     + +  A     GDIV + G++LG+H+G+
Sbjct: 173 RRIAAEYGLTTANKPESQDLCLVESNGSMRAFLDKYLA--PKPGDIVDVAGKVLGQHDGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+V+ LD  +++V+VG R         + ++NW+   + E +
Sbjct: 231 HHYTIGQRKGLGIAAAEPLYVIELDAVNNKVVVGDRTKGTQPECTVNQVNWV--SMAEPS 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +  ++ RSS  PV V    N   V + F++ +  +  GQA V+Y  D    +VLG
Sbjct: 289 TPIRAEVQIRYRSSPTPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWYDGD----KVLG 343

Query: 380 GGII 383
           GGII
Sbjct: 344 GGII 347


>gi|257470341|ref|ZP_05634432.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064551|ref|ZP_07929036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313690227|gb|EFS27062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 359

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 215/378 (56%), Gaps = 37/378 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D+N K   + VAMSGGVDSS VA LLK+ GY+V GVT++              C  +
Sbjct: 12  LQYDENNKSTTIAVAMSGGVDSSTVAYLLKKQGYNVFGVTMK-------------TCKPE 58

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA++VCD + + +Y+ D  + F+  V+  F   Y  G+TP PC+ CN+ +K   L+ 
Sbjct: 59  DS-DAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLID 117

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
             R  GAD +ATGHY + +   L +GDD  +            DQ YFL    +  L  L
Sbjct: 118 FARSKGADFMATGHYTQMKDGVLSMGDDAGK------------DQVYFLSQMKKDNLKYL 165

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
           +FP+G+++K  VR+LA+ +G+ +  K DSQ+ICFV+ GK  + +  ++ G A + G+I+ 
Sbjct: 166 KFPIGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMSNGKAGKPGNIID 225

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +NG++LG+H G+  YTIGQR+GLG+A+  PL+V+ LD   + VIVGP E L  + +    
Sbjct: 226 VNGKVLGKHKGLSFYTIGQRKGLGIALESPLYVIELDSKRNCVIVGPNEMLFKNSLIAES 285

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQAC 365
           +N +     ED  ++G +C+ K RS        ++    G + V+F +++V  V  GQ  
Sbjct: 286 VNLISVDNIED--LNGIECWAKTRSRDQLHKCKLEVLSSGNIKVNFIENQVRAVTPGQGV 343

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D    +VLG G I
Sbjct: 344 VFYDEDH---KVLGSGFI 358


>gi|126656453|ref|ZP_01727714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. CCY0110]
 gi|126622139|gb|EAZ92846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. CCY0110]
          Length = 349

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 204/367 (55%), Gaps = 27/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L+  GY VIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAASLQHQGYTVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F   +I    S Y +G TPLPC  CNR VKF  +L+  R+ L  D 
Sbjct: 56  QLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAREELNCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+  KE  
Sbjct: 116 IATGHYARIRY---DEQMDRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           R +A E  L  A K +SQD+C ++       + D   +       EG+IV L+G++LG H
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIKPK-----EGEIVDLDGKVLGTH 227

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R +       +  +NW+     
Sbjct: 228 QGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWVSIAEP 287

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              +    +  V+ RS    V +    N+  V + F++++ G+  GQA VFY    N   
Sbjct: 288 SSPITAAVQ--VRYRSKAVAVTIIPIENNR-VKLQFDEAQFGITPGQAAVFY----NGEI 340

Query: 377 VLGGGII 383
           VLGGGII
Sbjct: 341 VLGGGII 347


>gi|314966673|gb|EFT10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL082PA2]
 gi|314981402|gb|EFT25496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA3]
 gi|315092068|gb|EFT64044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA4]
 gi|315103674|gb|EFT75650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL050PA2]
 gi|327327498|gb|EGE69274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL103PA1]
          Length = 396

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 214/381 (56%), Gaps = 25/381 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           ++V+ AMSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR
Sbjct: 31  VKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 89

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 90  AADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 149

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K 
Sbjct: 150 DAVATGHYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKV 204

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257
           +VR  A  +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HN
Sbjct: 205 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHN 261

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  ++TIGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W   
Sbjct: 262 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 319

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D  
Sbjct: 320 ---SGEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD-- 374

Query: 374 EARVLGGGIISGSKRSDAVEE 394
              V+G   I G+ R+    E
Sbjct: 375 --LVVGSATICGTDRAGVKAE 393


>gi|187778511|ref|ZP_02994984.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC
           15579]
 gi|187772136|gb|EDU35938.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC
           15579]
          Length = 353

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 206/364 (56%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSASEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LNIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNERKVIVKAEDDKKDQTYMMYNLKQYQLDRTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++     E  +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFIPFDKLEKPM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V FE  +  +  GQ+ VFY  D     + GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDV----LAGGG 347

Query: 382 IISG 385
           II G
Sbjct: 348 IIEG 351


>gi|256027773|ref|ZP_05441607.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
 gi|289765727|ref|ZP_06525105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289717282|gb|EFD81294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 362

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 211/387 (54%), Gaps = 38/387 (9%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           V SE ++   ++ D + ++++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    + 
Sbjct: 7   VASEFSKY--IEFDSSKRNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS- 63

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                        DA++VCD + + HYV D  + F+  V+  F S Y  G TP PC+ CN
Sbjct: 64  -------------DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCN 110

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           R +KF  +L      GA  +ATGHY + +   L VGDD              +DQ YFL 
Sbjct: 111 RHIKFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLS 158

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
              + +L  + FP+GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK  + +     G
Sbjct: 159 QIQKDRLNKIIFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKG 218

Query: 239 IALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
            A + G+IV  +G ILGRH G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E 
Sbjct: 219 KAEKTGNIVDKDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNED 278

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           L    +    +N       E   +D  +CF K RS        ++++ D   V F  ++V
Sbjct: 279 LFKDELIATRLNLFLVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKV 336

Query: 358 -GVASGQACVFYTSDSNEARVLGGGII 383
             +  GQ  VFY   ++E  V+ GG I
Sbjct: 337 RAITPGQGIVFY---NDEGNVIAGGFI 360


>gi|160946390|ref|ZP_02093599.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270]
 gi|158447506|gb|EDP24501.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270]
          Length = 350

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 200/357 (56%), Gaps = 11/357 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDS V   LL ++GY+VIGVT+ L         +  CC+   V DA+ V + + V 
Sbjct: 1   MSGGVDSCVACHLLLKEGYEVIGVTMNLVPKGHLYDEEKGCCSLSSVMDAKIVAEAMGVK 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HY   + E F   VI  F   Y+ G TP PCV CN+ +KF+  +   R L AD ++TGHY
Sbjct: 61  HYTMSFREEFDRKVIENFVREYSLGYTPNPCVACNKYIKFNSFVDKIRPLKADFISTGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            +      D    R ++ R  D ++DQ+YFL+ T+Q+ L    FPL D++KE VR +A++
Sbjct: 121 AKVEF---DKNYNRYLLKRAKDSKKDQTYFLYNTSQEVLSKTLFPLADLEKEKVRQIAKD 177

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
             +    K DS++ICFVQ   +   +K+ N  +  EG  V  NG  LG+H GI+ YT+GQ
Sbjct: 178 ENILTYSKKDSEEICFVQNRDHGLFIKQRNPELIKEGYFVDENGNKLGKHKGIVYYTVGQ 237

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           R+GLG+A+G+ +FV  ++   + V +   ++L  ++I +RE N++      DA+    + 
Sbjct: 238 RKGLGIALGKRVFVSKINAIDNTVTLSDEDALYKNKIRIREENFIP----FDALEKPLEV 293

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            VK+R  Q      +   ++ ++V+FEK       GQ+ VFY  D     V+GGGII
Sbjct: 294 SVKVRHGQSETKGLLFYKNNDLFVEFEKQVRAPNKGQSAVFYLDDI----VVGGGII 346


>gi|317133301|ref|YP_004092615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471280|gb|ADU27884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ethanoligenens harbinense YUAN-3]
          Length = 363

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 15/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ AMSGGVDSSV AALLK  G  VIG+TL ++   +    + SCC+  DV DAR VC+ 
Sbjct: 12  VLAAMSGGVDSSVTAALLKEQGASVIGITLNVWPEEENPCAR-SCCSVTDVDDARAVCNV 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV + +  F+  VI  FA+ Y  G TP PC+ CN  VKF+ +L    +  AD +A
Sbjct: 71  LGIPHYVLNTQADFKRGVIDYFAAEYLRGRTPNPCIACNARVKFTAMLRKADEFQADFIA 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    + D G  R  + R  D  +DQ+Y L+  TQ QL  + FP G  +K  +R 
Sbjct: 131 TGHYAR---ILRDAGGCR--LVRAADARKDQTYVLYMLTQTQLGRILFPCGGYEKPQIRA 185

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA+  GL    K+DSQD+CF+ +G Y   ++   AG+   G+IV  +GQ+LGRH+G+  +
Sbjct: 186 LAKAFGLPTFQKTDSQDLCFIGRGGYTGFLRENCAGLLRPGNIVDESGQVLGRHDGVYRF 245

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQ +GLG    + L+V+ +D   + V VG   +L      +   + +  G  E    D
Sbjct: 246 TIGQHKGLGAFSEKKLYVLSIDAARAEVRVGENAALFAAGALVGGTHRILPGALE----D 301

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G +   KIR +   VP  +   ++G   + F++ +  V  GQA VFY  D+    VLGGG
Sbjct: 302 GARVQAKIRYNAPAVPATLHTVENGALRLLFDEPQRAVTPGQAAVFYDGDT----VLGGG 357

Query: 382 II 383
            I
Sbjct: 358 TI 359


>gi|260892132|ref|YP_003238229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ammonifex degensii KC4]
 gi|260864273|gb|ACX51379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ammonifex degensii KC4]
          Length = 344

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 196/363 (53%), Gaps = 27/363 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV VA+SGGVDS+  A LL + GY+V GVT+                 G++   A  V  
Sbjct: 3   RVAVALSGGVDSATAAFLLLQAGYEVFGVTM--------------LVTGEEGEKAAEVAA 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H+VFD  + F   VI PF  +Y AG TP PCV CNR +KF  LL    +LGAD L
Sbjct: 49  KLKIPHFVFDLRQEFAQEVIKPFVEAYLAGLTPNPCVWCNRKLKFGLLLEKALKLGADFL 108

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D  + R ++ R  D  +DQSYFL++  QQQL  + FPLG   K    
Sbjct: 109 ATGHYARVWF---DPARERYLLARGKDRRKDQSYFLYSLNQQQLARVLFPLGGRTKAENL 165

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            L +++GL +  + +SQD+CF++ G Y +++K +       G I+   G+ +G H G+  
Sbjct: 166 LLVKKLGLPL--REESQDVCFLKGGDYRELIKAMAQEKVKPGPILDPQGKKIGTHRGLAF 223

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG A G+P +V+ LD   + +IVGP E L      +  IN++   LFE    
Sbjct: 224 YTIGQRRGLGHAWGKPYYVLALDPRRNALIVGPEEMLYRPSCRVEGINFI---LFERP-P 279

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             F   V++R +   VP  +    + V V+F   +  V  GQA VFY  D     V+GGG
Sbjct: 280 GPFTAAVQVRYTSPAVPATLFPEGEAVRVEFASPQRAVTPGQAAVFYQEDL----VVGGG 335

Query: 382 IIS 384
            I+
Sbjct: 336 TIA 338


>gi|86608667|ref|YP_477429.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502696|sp|Q2JM78|MNMA_SYNJB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86557209|gb|ABD02166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 368

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 199/350 (56%), Gaps = 19/350 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+V A+SGGVDSS VAALL+  GY V GVTL L       + KG CC  + + DA  VC+
Sbjct: 19  RIVAALSGGVDSSTVAALLQEQGYAVEGVTLWLM------RGKGQCCT-EGLVDAAAVCE 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H+V D  E F+  ++    + YA G TPLPC  CN+ VKF  LL+  R+ LG   
Sbjct: 72  QLGIPHHVVDSRELFQANIVDYLVAGYAEGITPLPCSQCNKLVKFGPLLAYAREKLGISQ 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R +  + G+ +  + R +D ++DQSYFL+  +Q+ L    FPLG+  K   
Sbjct: 132 MATGHYARVR-FNAELGRYQ--LLRAVDRQKDQSYFLYDLSQEHLAHSLFPLGEYTKAQT 188

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGI 259
           R LA   GL  ADK +SQD+C ++   Y  +   ++  +    G+IV   G++LG H GI
Sbjct: 189 RQLAARYGLVTADKPESQDLCLIE--TYGSMRSFLDQYLGQRPGEIVDTQGRVLGSHEGI 246

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+A   PL+VV +D   +RV+VG RE       ++ ++NW+       A
Sbjct: 247 HHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEATQAEAWVSQVNWVSI----PA 302

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
                   V++R    PVP  V   + + V + F + + GV  GQA V+Y
Sbjct: 303 PTGSLAVEVQVRYRTPPVPAMVIPESPERVKLQFAEPQFGVTPGQAAVWY 352


>gi|54026238|ref|YP_120480.1| tRNA-specific 2-thiouridylase MnmA [Nocardia farcinica IFM 10152]
 gi|81602523|sp|Q5YRS5|MNMA_NOCFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54017746|dbj|BAD59116.1| putative tRNA methyl transferase [Nocardia farcinica IFM 10152]
          Length = 372

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/380 (39%), Positives = 209/380 (55%), Gaps = 24/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 2   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F ++YAAGETP PC+ CN  +KFS L      LG 
Sbjct: 61  AADVLGIPFYVWDFADRFKEDVIDDFVAAYAAGETPNPCLRCNEKIKFSALADRAVALGF 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R       DG    ++ R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 121 DAVVTGHYARL-----SDG----VLRRAVDADKDQSYVLAVLTAEQLARAMFPVGDTPKP 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A E GL +A+K DS DICF+  G   D    + A I +  G +V  +GQ+L  H 
Sbjct: 172 QIRAEAAERGLAVANKPDSHDICFIPSG---DTRAFLGARIGIRPGAVVDADGQVLAEHE 228

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+    A G+P +V  +D  S  V VG  E L+V ++      W   
Sbjct: 229 GVHGFTIGQRKGLGLPGPAADGKPRYVTDIDPASGTVRVGSAEDLQVRQVRAERAVWT-S 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           G   +  +D   C  ++R+     P   +  D G+ V   +   GVA GQA V Y  D  
Sbjct: 288 GRTPEGPID---CVAQVRAHGGTAPATAEAVDGGLVVRLHEPLTGVAKGQAVVLYRPDPL 344

Query: 374 EARVLGGGIISGSKRSDAVE 393
              VLG G ISG+ R+ A++
Sbjct: 345 GDEVLGSGTISGTARTHALD 364


>gi|227832922|ref|YP_002834629.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262182589|ref|ZP_06042010.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254811450|sp|C3PFT7|MNMA_CORA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|227453938|gb|ACP32691.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 361

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/377 (40%), Positives = 201/377 (53%), Gaps = 26/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G+DVIGV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 1   MRVLVAMSGGVDSSVAAARAVEAGHDVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+ AVI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSEEFKEAVIGDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      +  DG  R    R +D  +DQSY L   T+++L    FP+GD  K  
Sbjct: 121 AVATGHYAT----IDSDGYMR----RSLDENKDQSYVLGVITKEELDHCFFPIGDTPKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           +R+ A+  G   A K DS DICF+  G     + R    I L  G IV   G  L  H+G
Sbjct: 173 IREEAKRHGFSTAAKPDSYDICFIPDGNTQAFLGR---SIGLRPGMIVDTEGNELKEHDG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G P +V  +D  +  V VG R  L V  I    + +L   
Sbjct: 230 AWNYTIGQRKGLDIKTPTADGSPRYVTDIDAATGTVTVGSRADLAVTHIEADRLKYLHPA 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +  D     F C V++R+    VP    V R  D + ++  +   GVA GQA V Y    
Sbjct: 290 MEGD-----FDCEVQVRAHGSVVPCHAHVDREADRMTLELNEPLSGVARGQAAVLYLPSP 344

Query: 373 NEAR--VLGGGIISGSK 387
           +E    VLG G I G++
Sbjct: 345 DELGDIVLGSGTICGTE 361


>gi|45658118|ref|YP_002204.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601360|gb|AAS70841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 366

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 214/376 (56%), Gaps = 13/376 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V A LL  DGY+VIGV L+   Y +      K SCC+ +D+ DAR V  ++ 
Sbjct: 1   MSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDVGISLK 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + LG D +ATG
Sbjct: 61  IPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGIDKIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R    +  +G+R  I    +D+ ++Q+Y+L+  +Q+ L ++ FPLG+M K  VR +A
Sbjct: 121 HYAR----IARNGERYAI-ANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPEVRQIA 175

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
           R MGL +ADKS+SQ+ICF+ +  Y   +++ N      G     +G+I+G+H G  N+TI
Sbjct: 176 RRMGLPVADKSESQEICFIPENDYRKFLEKKNVEFT-PGFFKLKDGRIVGKHKGRENFTI 234

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQR+GLG+A   PL+V+ ++ + S VI+G           + ++N+ G     +   +  
Sbjct: 235 GQRKGLGIAWKNPLYVISIEDDGS-VILGEENETYNESFSVIDLNFQGLAPLNEG--ESL 291

Query: 325 KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +C V++R    P+   + +  +G+ V   +   GV  GQ+ VFY  DS+   +L GGIIS
Sbjct: 292 ECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLLGGIIS 349

Query: 385 GSKRSDAVEESLLSVI 400
                  V E  +SV+
Sbjct: 350 KGSIQMRVAEPAISVL 365


>gi|313896558|ref|ZP_07830107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974743|gb|EFR40209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 365

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 207/365 (56%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79
           RVVVAMSGGVDSS+ AALL   GYDV+GVT++L N  +    +   SCC+   V DARRV
Sbjct: 9   RVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLSSVDDARRV 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HYV D+   F+ +VI  F   Y  G TP PC+ CNR +KF  LL  + +LGA 
Sbjct: 69  ADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLHKSAELGAS 128

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  DG   R+  +  D+++DQSY L+   Q+ L  +  PLGD  K +
Sbjct: 129 HVATGHYAR----IDFDGGMYRLR-KGKDVDKDQSYVLYHLNQETLAHVLLPLGDFDKGT 183

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R +A E  L +A K +SQ+ICFV +  Y   +K    G ++ GDIV   G +LG H+GI
Sbjct: 184 TRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGNVLGHHDGI 243

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFED 318
             YTIGQRRGLG+A  +PL+V  LD   + V+VG  E +    +   +++W + + L E 
Sbjct: 244 SFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWTMWESLDEV 303

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +      + K  +    +P+   R    + V F + +  V  GQ+ VFY  D     VL
Sbjct: 304 CMAHAKIRYGKREAEARIMPLDGNR----LRVRFTEPQRAVTPGQSIVFYEGDV----VL 355

Query: 379 GGGII 383
           GGG+I
Sbjct: 356 GGGVI 360


>gi|294793679|ref|ZP_06758816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 3_1_44]
 gi|294455249|gb|EFG23621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 3_1_44]
          Length = 363

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 202/362 (55%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 15  IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 70  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V     G    G+IV  +G++LG+HNG+ NY
Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY    N  ++LGG 
Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 357

Query: 382 II 383
           +I
Sbjct: 358 VI 359


>gi|269797937|ref|YP_003311837.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Veillonella parvula DSM 2008]
 gi|282850166|ref|ZP_06259545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella parvula ATCC 17745]
 gi|269094566|gb|ACZ24557.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Veillonella parvula DSM 2008]
 gi|282579659|gb|EFB85063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella parvula ATCC 17745]
          Length = 353

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 203/362 (56%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +   Y  + G     + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 120 TGHYAQVN-YNEETGLYE--LHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V     G    G+IV  +G++LG+HNG+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY    N  ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 347

Query: 382 II 383
           +I
Sbjct: 348 VI 349


>gi|294791818|ref|ZP_06756966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 6_1_27]
 gi|294457048|gb|EFG25410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 6_1_27]
          Length = 363

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 202/362 (55%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 15  IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 70  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V     G    G+IV  +G++LG+HNG+ NY
Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY    N  ++LGG 
Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 357

Query: 382 II 383
           +I
Sbjct: 358 VI 359


>gi|320529055|ref|ZP_08030147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas artemidis F0399]
 gi|320138685|gb|EFW30575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas artemidis F0399]
          Length = 361

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 207/365 (56%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79
           RVVVAMSGGVDSS+ AALL   GYDV+GVT++L N  +    +   SCC+   V DARRV
Sbjct: 5   RVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLSSVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HYV D+   F+ +VI  F   Y  G TP PC+ CNR +KF  LL  + +LGA 
Sbjct: 65  ADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLHKSAELGAS 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  DG   R+  +  D+++DQSY L+   Q+ L  +  PLGD  K +
Sbjct: 125 HVATGHYAR----IDFDGGMYRLR-KGKDVDKDQSYVLYHLNQETLAHVLLPLGDFDKGT 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R +A E  L +A K +SQ+ICFV +  Y   +K    G ++ GDIV   G +LG H+GI
Sbjct: 180 TRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGNVLGHHDGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFED 318
             YTIGQRRGLG+A  +PL+V  LD   + V+VG  E +    +   +++W + + L E 
Sbjct: 240 SFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWTMWESLDEV 299

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +      + K  +    +P+   R    + V F + +  V  GQ+ VFY  D     VL
Sbjct: 300 RMAHAKIRYGKREAEARIMPLDGNR----LRVRFTEPQRAVTPGQSIVFYEGDV----VL 351

Query: 379 GGGII 383
           GGG+I
Sbjct: 352 GGGVI 356


>gi|237738505|ref|ZP_04568986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420385|gb|EEO35432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 357

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 215/375 (57%), Gaps = 37/375 (9%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D+  K++++ VAMSGGVDSS VA +LK+ GYD+IG+T++              C  +D  
Sbjct: 13  DEKNKNIKIAVAMSGGVDSSTVAYILKKQGYDLIGITMR-------------TCNPED-E 58

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA++VC+ + + HYV D  + F+  V+  F   Y  G+TP PC+ CN+ +KF  L+   R
Sbjct: 59  DAKKVCEDLGIPHYVLDATKEFKTKVMDYFIEEYLQGKTPNPCMVCNKHIKFGMLIDFAR 118

Query: 135 QLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             GAD +ATGHY + +   L +GDD              +DQ YFL    ++ L  L FP
Sbjct: 119 SKGADFMATGHYTQLKDGVLSMGDDP------------NKDQVYFLSQINKENLKYLMFP 166

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  VR+LA ++G+ +  K DSQ+ICFV+ GK  + +     G A  +G+IV  +G
Sbjct: 167 IGDLEKPKVRELAEQLGVRVYAKKDSQEICFVEDGKLKEFLLENTKGRAGKKGNIVTTDG 226

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++LG+HNG+  YTIGQR+GLG++  +PL+V+ LD  ++ VIVG  E L    +    +N 
Sbjct: 227 KVLGKHNGLAFYTIGQRKGLGISQEKPLYVIELDSKNNNVIVGDNEQLFKGELIAENVNL 286

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQACVFY 368
           +     E+  ++G  C+ K RS        ++  ++G V V F + +V  V  GQ  VFY
Sbjct: 287 ISFDRLEE--LNGVVCWAKTRSRDKLHKCQLEVLENGNVKVRFIEDKVRAVTPGQGVVFY 344

Query: 369 TSDSNEARVLGGGII 383
              + E +VLG G I
Sbjct: 345 ---NEEKKVLGSGFI 356


>gi|254303789|ref|ZP_04971147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323981|gb|EDK89231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 362

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 203/377 (53%), Gaps = 36/377 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ D N  ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F   Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVDEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                GA+ +ATGHY + +   L VGDD              +DQ YFL    + +L  +
Sbjct: 121 FILSKGANFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247
            FP+GD++K  +R+ A++MG+ +  K DSQ+ICFV  GK    +     G A + G+IV 
Sbjct: 169 IFPVGDLEKPKLREFAQQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVD 228

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG+H G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  + L    +    
Sbjct: 229 KNGNILGKHRGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGENKDLFKDELTATR 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           +N       +   +D  +CF K RS        ++++ D   V F  ++V  V  GQ  V
Sbjct: 289 LNLFSVSSLDS--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAVTPGQGIV 346

Query: 367 FYTSDSNEARVLGGGII 383
           FY  + N   V+ GG I
Sbjct: 347 FYNIEGN---VIAGGFI 360


>gi|195952741|ref|YP_002121031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|226704772|sp|B4U7E2|MNMA_HYDS0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|195932353|gb|ACG57053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 342

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V MSGGVDSSV A LLK  G+DVIGVTL+ Y   +  +    CC+ +DV DAR VC
Sbjct: 1   MIIAVGMSGGVDSSVAAYLLKEQGHDVIGVTLRFY-KEECKENARVCCSPKDVQDARIVC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
           D + + H   D+E  F+  VI  F  SY  G TP PC  CN+ VK + L    +Q    D
Sbjct: 60  DMLGIPHITLDWENLFKERVIDYFIKSYKTGLTPNPCAICNKDVKTAFLGFYLKQTADID 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY+     + ++GK +R        E+DQSYF+    +Q L  L FP+G M K+ 
Sbjct: 120 FLATGHYV-----IKEEGKIKRAK------EKDQSYFMALVPKQSLDYLMFPVGYMTKQE 168

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQ-ILGRHN 257
           +RD+A+++ L +A+K +SQD+CF+   K  D+   ++  I + +GDIVH+  Q  LG+H 
Sbjct: 169 IRDIAKKINLPVANKIESQDVCFL---KGMDLEDYLSQFIDMTQGDIVHIATQKTLGKHK 225

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQR GLGV+  +PL+VV  D   + + VG +E L    I L++ N L D  FE
Sbjct: 226 GIHRYTIGQRHGLGVSYHKPLYVVEKDIEKNILYVGEKEYLLKDAITLKDYNKLED--FE 283

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                    +++IR +  P+P+  ++ N D V +  ++    VA GQ    Y  D     
Sbjct: 284 KD-----NMYIQIRYNSKPIPIKHIEENKDNVIIFLKEPATQVAKGQVGAIYFGDI---- 334

Query: 377 VLGGGIIS 384
           +LGGGIIS
Sbjct: 335 LLGGGIIS 342


>gi|154484582|ref|ZP_02027030.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC
           27560]
 gi|149734430|gb|EDM50347.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC
           27560]
          Length = 358

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 15/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           + ++AMSGGVDSSV A  +K  GYD IGVT++LY++     SK K +CC+  DV DAR V
Sbjct: 3   KALIAMSGGVDSSVAAVFMKEKGYDPIGVTMKLYDNEDINMSKEK-TCCSLSDVEDARSV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +   +YVF+++  F+  VI  F   Y  G TP PC+DCNR +KF +L    + LG D
Sbjct: 62  AYKVGFPYYVFNFKAEFKEKVIDKFVGCYMCGMTPNPCIDCNRYLKFEELYRRAKALGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TGHY R R    D+   +  + + +D  +DQSY L+  TQ+QL    FPLG+  K+ 
Sbjct: 122 VIVTGHYARIRF---DEATGKYQLMKGIDDSKDQSYVLYHMTQEQLAHTMFPLGEYTKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R  A E GL  ADK DSQDICF+  G +   ++        +G+ + +NG+++G+HNG 
Sbjct: 179 IRKKAAETGLINADKHDSQDICFIPDGNHMKFIEEYTHKKVGKGNFLDINGKVIGQHNGY 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQR+G+ V      +V+ +   ++ V+VG  + L    +   + NW+      +A
Sbjct: 239 YRYTVGQRKGINVNRDGKHYVLEIRPETNEVVVGRNKDLFTEELVATDFNWISG----EA 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                K   + R  Q       +  ++G V V F++    +  GQ+ V Y  D     VL
Sbjct: 295 PTGEIKVSGRTRYHQPLTEGVAKVLENGDVKVSFDEPIRAITKGQSVVLYDGDV----VL 350

Query: 379 GGGIIS 384
           GGG I 
Sbjct: 351 GGGTIK 356


>gi|72382697|ref|YP_292052.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           NATL2A]
 gi|123620903|sp|Q46JH9|MNMA_PROMT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72002547|gb|AAZ58349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. NATL2A]
          Length = 388

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 148/380 (38%), Positives = 211/380 (55%), Gaps = 35/380 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSS+ AALL + G+DV G+TL L       K KGSCC+   + DA  +CD 
Sbjct: 23  VVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGICDQ 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + + H++ D +E F+  +I      Y  G TPLPC  CN++VKFS++L  V      + +
Sbjct: 76  LGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNIEKI 135

Query: 142 ATGHYIRSRLY--------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ATGHY R R          +  DG +R  + R  DL +DQSYFL+   Q+ L    FPLG
Sbjct: 136 ATGHYARIRYSNESFNENDLPSDGIKRHKLLRGKDLNKDQSYFLYDLPQEILGKTIFPLG 195

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI 252
           ++ KE  R  A +  L  A K +SQD+C  +   Y  +   I+  +  + G++V  NGQI
Sbjct: 196 ELTKEITRIEALKHSLKTAKKPESQDLCLAEH--YGSMNAFIDKYLPQKKGEVVLKNGQI 253

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G HNGI ++TIGQR+GLG+A   PL VV +D + +RVIV PRE        +++INW+ 
Sbjct: 254 IGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDINWVS 313

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY---VDFEKSEVGVASGQA 364
                +A  +  +  V+IR          +P+F    ++  Y   + FEK +  +  GQA
Sbjct: 314 I----EAPQEPIEVEVQIRYRSKAMKAKLIPIFDSNKENYCYKCNIHFEKDQFSITPGQA 369

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D     VLGGG+IS
Sbjct: 370 AVFYKGD----YVLGGGLIS 385


>gi|297565299|ref|YP_003684271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Meiothermus silvanus DSM 9946]
 gi|296849748|gb|ADH62763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Meiothermus silvanus DSM 9946]
          Length = 371

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 205/369 (55%), Gaps = 31/369 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VAMSGGVDSSV AALLK  GY+VIG  ++ +   K      +CC+    Y+ARRV D
Sbjct: 7   RVLVAMSGGVDSSVSAALLKAQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARRVAD 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y+ DY E F+  +I PF + YAAGETP PCV+CN  VKF  LL   R LG D +
Sbjct: 67  IVGVPFYLLDYREEFQEKIIDPFIAGYAAGETPNPCVNCNTRVKFDSLLKKARMLGCDFV 126

Query: 142 ATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY+    + L+ GD              ++DQ+YFL+ T ++ +  + FP+G ++K 
Sbjct: 127 ATGHYVIREGNALFRGDP-------------KKDQTYFLWGTPKEAIPHMMFPVGHLEKP 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A + GL  A K +SQ+ICFV QG   + +   N   A  G +V L  G+++G H 
Sbjct: 174 QVRAIAEQYGLPTAKKPESQNICFV-QGDLKEFLS--NHLTARPGPLVDLETGEVIGEHA 230

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQ++GLG+       +VV ++  ++ VIVGPRE+     +  RE+N     L 
Sbjct: 231 GAQFYTVGQKKGLGLFKTHLERYVVRVNPATNEVIVGPREACLWSGLEAREVN-----LL 285

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            +         V++R    PV   V+R  D G+ V   + +  V  GQ+ V Y  D    
Sbjct: 286 VEPEELPETLEVQVRYRTKPVLGKVERLGDGGMTVRLAEPQFAVTPGQSMVLYQGD---- 341

Query: 376 RVLGGGIIS 384
           R+LGGG I 
Sbjct: 342 RLLGGGFIQ 350


>gi|311740584|ref|ZP_07714411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304104|gb|EFQ80180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 365

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 203/376 (53%), Gaps = 26/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G++VIGV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 5   MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+  VI  F  SYA GETP PC+ CN  +KF  LL     LG D
Sbjct: 65  CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      +  DG  R    R +D ++DQSY L   + ++L    FP+GD  K  
Sbjct: 125 AVATGHYAT----IDKDGYMR----RSLDEKKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258
           +R+ A   G   A K DS DICF+  G   +    + A I L  G IV   G  L  H+G
Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDG---NTQAFLGARIGLRPGMIVDQEGTELKEHDG 233

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G
Sbjct: 234 AWNYTIGQRKGLDIKAPAADGRPRYVTDIDAVTGTVTVGAREDLAVTSIQADRLKYLHPG 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +  D     F+C V++R+    VP    V R  D + ++ ++S  GVA GQA V Y    
Sbjct: 294 MDGD-----FECEVQVRAHGSVVPCTAHVDREADEMRLELKESLSGVARGQAAVLYLPSP 348

Query: 373 NEAR--VLGGGIISGS 386
           +E    V+G G I G+
Sbjct: 349 DELGDIVIGSGTICGT 364


>gi|170755772|ref|YP_001782543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
 gi|205810298|sp|B1ILH4|MNMA1_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|169120984|gb|ACA44820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
          Length = 353

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 206/363 (56%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CNRT+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNRTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +     G     R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDYIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKKGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  R++N++     E ++  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFIPFDKLEKSM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     ++GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDM----LVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|153939777|ref|YP_001392187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|205810589|sp|A7GHC7|MNMA2_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|152935673|gb|ABS41171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|295320186|gb|ADG00564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. 230613]
          Length = 353

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F+N VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKNNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +     G     R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++     E  +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFIPFDKLEKPM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     + GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDI----LAGGG 347

Query: 382 IISG 385
           II G
Sbjct: 348 IIEG 351


>gi|116328677|ref|YP_798397.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330666|ref|YP_800384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281579|sp|Q04TZ4|MNMA_LEPBJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122283538|sp|Q04ZN1|MNMA_LEPBL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116121421|gb|ABJ79464.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124355|gb|ABJ75626.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 377

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 222/380 (58%), Gaps = 13/380 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           +++VAMSGGVDS+V A LL  +GY+VIGV L+   Y +      K SCC+ +D+ DAR V
Sbjct: 5   KIIVAMSGGVDSAVTAGLLMEEGYEVIGVNLRTWEYEAPVCDTTKKSCCSPEDIRDARDV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + LG D
Sbjct: 65  GLSLKIPFYVVKMEKVFQEKVIDRFIDDYQHGKTPNPCVECNTFVKFGALFEKAKALGID 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  +G+R  I    +D+ ++Q+Y+L+  +Q+ L ++ FPLG M K  
Sbjct: 125 KIATGHYAR----IVRNGERYAI-SNGVDIGKNQAYYLYGLSQENLKNVTFPLGGMTKPE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++AR MGL +ADK++SQ+ICF+ +  Y   +++ +      G     +G+I+G+H G 
Sbjct: 180 VREIARRMGLSVADKAESQEICFIPENDYRKFLEKKHVEFT-PGFFKLRDGRIIGKHKGR 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            N+TIGQR+GLG+A   PL+V+ ++ + S VI+G           + ++N+ G     + 
Sbjct: 239 ENFTIGQRKGLGIAWRNPLYVIAIEDDGS-VILGEENETYAESFSVIDVNYQGFAPLGEG 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
             + F+C V++R    P+   + + ++ + V+  +   GV  GQ+ VFY  +S+   +LG
Sbjct: 298 --ESFECRVQVRYRHTPIRCRITKMNEDLVVNPLEEVRGVTPGQSAVFYPLNSDYL-LLG 354

Query: 380 GGIISGSKRSD-AVEESLLS 398
           G I  GS R   A EES ++
Sbjct: 355 GIIRKGSIRMQVAKEESAIA 374


>gi|220906770|ref|YP_002482081.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7425]
 gi|219863381|gb|ACL43720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7425]
          Length = 368

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 214/376 (56%), Gaps = 26/376 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++  ++  VVV +SGGVDSSV AA L   GY V+G+TL L       K KG CC+ + + 
Sbjct: 7   NQTEQNKSVVVGLSGGVDSSVAAASLHHQGYRVVGLTLWLM------KGKGQCCS-EGLV 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA ++C+ + V H++ D  E F++ ++    + Y+ G TPLPC  CNRTVKF  +L   +
Sbjct: 60  DAAQLCEELGVPHHIVDSRELFQSQIVDYLVAGYSDGITPLPCSQCNRTVKFGPMLHYAQ 119

Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LG + +ATGHY R  +   D    R  + R +D  +DQSYFL+  TQ  L    FPLG
Sbjct: 120 TELGIETIATGHYARITV---DPQTGRYQLRRAVDRSKDQSYFLYDLTQAHLAHTLFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQ 251
           +  K + R +A +  L  A+K +SQD+C ++          K IN    ++G+IV   G+
Sbjct: 177 EQTKATTRQIAAQFNLHTAEKPESQDLCLIETHGSMQAFLDKYINP---IQGEIVDRQGR 233

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H GI +YTIGQR+GLG+A  +PL+V+ LD+  +RVIVG RE        ++ +NW+
Sbjct: 234 VLGYHQGIHHYTIGQRKGLGIAAAQPLYVIGLDRAMNRVIVGDREEAVQSECTVQRVNWV 293

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVF 367
                +  +    +  ++ RSS  PV V     ++G    V + F++ + G+  GQA V+
Sbjct: 294 SIAPPDAPIAAEVQ--IRYRSSPVPVTVVPLPEEEGRSNRVKLIFDQPQFGITPGQAAVW 351

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     +LGGGI+
Sbjct: 352 YQGDV----LLGGGIL 363


>gi|166031729|ref|ZP_02234558.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC
           27755]
 gi|166028182|gb|EDR46939.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC
           27755]
          Length = 359

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 205/368 (55%), Gaps = 20/368 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K++  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDEFKQQEEGGCCGLSAVEDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV +++  F+  VI  F   Y  G TP PC+ CNR VK+  LL+   ++GAD
Sbjct: 65  AARLGIPYYVMNFKNEFKKYVIDYFIDDYLHGRTPNPCIACNRYVKWESLLTRAMEIGAD 124

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY +  +L  G    R  I      + +DQ+Y L+  TQ QL     P+G   K+
Sbjct: 125 YIATGHYAQVEQLPSG----RYSIKTSVTSM-KDQTYALYNLTQDQLSKTLMPVGKYSKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHN 257
            VR +A  +GL +A K DSQDICFV  G Y   ++    AG    G+ V  +G I+G+H 
Sbjct: 180 EVRKMAENIGLLVAHKPDSQDICFVPDGDYATYIEENTAAGSIRPGNFVTSDGTIVGQHK 239

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YT+GQR+GLG+++G P FV+ +   ++ V+VG  E      +    +N++      
Sbjct: 240 GIIHYTVGQRKGLGLSLGHPAFVLEIRPETNEVVVGTNEESMSRYVRANHVNFM-----S 294

Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            A +DG K  + KIR +       V+R  +D +   F++    +  GQA V Y  +    
Sbjct: 295 VADIDGKKRAWGKIRYNHKGAWCTVERTGEDEILCTFDEPVRAITPGQALVLYDGE---- 350

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 351 YVLGGGTI 358


>gi|237756395|ref|ZP_04584939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691446|gb|EEP60510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 352

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  A LLK+ GY+V+G++L+  +          CC+ +D+ DA++V +
Sbjct: 3   KVVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCEVDTQVCCSDKDILDAKKVAE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV ++++ F   VI  F   Y +G TP PC  CNR VK        + LG D L
Sbjct: 63  FLEIPHYVINWKDIFEKKVINYFIEGYKSGLTPNPCSICNREVKTGLFAKYIKSLGFDYL 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHYIR+ +   +DG   +++ R +D  +DQSYF+    ++ +  L FPLG++ KE VR
Sbjct: 123 ATGHYIRTDI---EDG--VKVLKRGIDKNKDQSYFMALVEREVVDTLIFPLGNLTKEEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A+E  + ++ K +S +ICF +     +  K +N     EG+IVH++G++LGRH GI N
Sbjct: 178 KIAQENKIPVSQKEESFEICFTKGKSPEEYFKTLNIKTN-EGEIVHISGKVLGRHKGIEN 236

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGL +A  EPL+V+  D  +++++VG ++ L   ++  ++ N+L        + 
Sbjct: 237 YTIGQRRGLNIAWKEPLYVIEKDALNNKIVVGEKDYLLTDKVVAKDFNFLV------PIE 290

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K  V+ R  Q P+       D + + V FE+     A GQ    Y  D+    +LGG
Sbjct: 291 KWKKIEVQGRYKQKPIKAKEYHFDGENLTVIFEEKVPRFAPGQILAVYDGDT----LLGG 346

Query: 381 GIISGS 386
           GIIS S
Sbjct: 347 GIISRS 352


>gi|313807611|gb|EFS46098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL087PA2]
 gi|313818648|gb|EFS56362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL046PA2]
 gi|313820418|gb|EFS58132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL036PA1]
 gi|313822776|gb|EFS60490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL036PA2]
 gi|313825290|gb|EFS63004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL063PA1]
 gi|314925110|gb|EFS88941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL036PA3]
 gi|314960438|gb|EFT04540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL002PA2]
 gi|314978611|gb|EFT22705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL072PA2]
 gi|314988029|gb|EFT32120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA2]
 gi|314989840|gb|EFT33931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA3]
 gi|315084219|gb|EFT56195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL027PA2]
 gi|315085563|gb|EFT57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL002PA3]
 gi|315088383|gb|EFT60359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL072PA1]
 gi|327443626|gb|EGE90280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL013PA2]
 gi|328753381|gb|EGF66997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL020PA1]
          Length = 360

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K +VR  A
Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HNG  ++T
Sbjct: 175 TALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G
Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRS 389
              I G+ R+
Sbjct: 343 SATICGTDRA 352


>gi|313764363|gb|EFS35727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL013PA1]
 gi|313792051|gb|EFS40152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA1]
 gi|313802000|gb|EFS43234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA2]
 gi|313812853|gb|EFS50567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL025PA1]
 gi|313815901|gb|EFS53615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL059PA1]
 gi|313827583|gb|EFS65297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL063PA2]
 gi|313838822|gb|EFS76536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL086PA1]
 gi|314915354|gb|EFS79185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA4]
 gi|314918090|gb|EFS81921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL050PA1]
 gi|314920172|gb|EFS84003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL050PA3]
 gi|314931695|gb|EFS95526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL067PA1]
 gi|314955597|gb|EFS99998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL027PA1]
 gi|314957994|gb|EFT02097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL002PA1]
 gi|314962706|gb|EFT06806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL082PA1]
 gi|314967428|gb|EFT11527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL037PA1]
 gi|315098625|gb|EFT70601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL059PA2]
 gi|315101372|gb|EFT73348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL046PA1]
 gi|315105724|gb|EFT77700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL030PA1]
 gi|315108590|gb|EFT80566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL030PA2]
 gi|327330347|gb|EGE72096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL097PA1]
 gi|327450691|gb|EGE97345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL087PA3]
 gi|327453231|gb|EGE99885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL092PA1]
 gi|327453970|gb|EGF00625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL083PA2]
 gi|328753227|gb|EGF66843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL025PA2]
 gi|328754110|gb|EGF67726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL087PA1]
          Length = 360

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K +VR  A
Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HNG  ++T
Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G
Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRS 389
              I G+ R+
Sbjct: 343 SATICGTDRA 352


>gi|322807224|emb|CBZ04798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 353

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 207/363 (57%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +     G     R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       +G+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  R++N++     E ++  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFIPFDKLEKSM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V FE  +  +  GQ+ VFY  D     ++GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFESKQRAITKGQSVVFYDKDM----LVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|168179339|ref|ZP_02614003.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226950335|ref|YP_002805426.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669769|gb|EDT81745.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226844215|gb|ACO86881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 353

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +     G     R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++     E  +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFIPFDKLEKPM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V FE  +  +  GQ+ VFY  D     + GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDI----LAGGG 347

Query: 382 IISG 385
           II G
Sbjct: 348 IIEG 351


>gi|148380860|ref|YP_001255401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153934263|ref|YP_001385167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153935159|ref|YP_001388636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
 gi|205810535|sp|A7FXG3|MNMA2_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|205810559|sp|A5I5Y9|MNMA2_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|148290344|emb|CAL84469.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152930307|gb|ABS35807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931073|gb|ABS36572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
          Length = 353

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 210/363 (57%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+      +RKG C       DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRD----ERKGYCNKSA-AEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +     G     R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       +G+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++     E ++  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIAKDVNFIPFDKLEKSM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     ++GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDM----LVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|328950099|ref|YP_004367434.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450423|gb|AEB11324.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
           DSM 14884]
          Length = 374

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 145/365 (39%), Positives = 200/365 (54%), Gaps = 20/365 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV AALLK  GY+VIG  ++ +   K      +CC+    Y+ARRV D
Sbjct: 8   RVLAAMSGGVDSSVTAALLKEQGYEVIGAMMRFWPDNKPEDCFNTCCSPDAAYEARRVAD 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  Y+ DY E F   +I PF   Y  GETP+PCV CN  VKF  LL   R LG D +
Sbjct: 68  QIGIPFYLLDYREVFEVEIIQPFLEGYRRGETPIPCVWCNTRVKFDALLKKARMLGCDYV 127

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       +G +     R  D  +DQ+YFL+ T ++ +  + FP+G M+K  VR
Sbjct: 128 ATGHYVRR-----VEGPQGIEFHRGGDPRKDQTYFLWGTPREAMPHILFPVGHMQKPEVR 182

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
            LA   GL  A K +SQ+ICFV  G     ++    G    G ++ L  G+++G H G  
Sbjct: 183 RLAERFGLITAKKPESQNICFV-PGSVRAFLEEHLGGQP--GPVIDLETGEVIGEHAGAQ 239

Query: 261 NYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQR+GLG+       +VV +   ++ VIVGPRE+ +   +  REIN L D      
Sbjct: 240 FYTVGQRKGLGLWKTHLERYVVEVRPQTNEVIVGPREACQWRGLEAREINLLLDPETLPE 299

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSDSNEARVL 378
           VV       ++R  Q P    V+    G +V +F++ +  V  GQ+ V Y  D    R+L
Sbjct: 300 VVT-----AQVRYRQRPARARVRELGAGRFVLEFDEPQFAVTRGQSVVLYDGD----RLL 350

Query: 379 GGGII 383
           GGG+I
Sbjct: 351 GGGVI 355


>gi|254431220|ref|ZP_05044923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanobium sp. PCC 7001]
 gi|197625673|gb|EDY38232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanobium sp. PCC 7001]
          Length = 399

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 215/389 (55%), Gaps = 33/389 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CCA + +
Sbjct: 25  LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACCA-EGL 77

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + V H+V D+ + FR  ++      YAAG TPLPC  CNR VKF+ +L+  
Sbjct: 78  VDAAGICEQLGVPHHVVDFRDHFRAQIVDFLVDGYAAGVTPLPCSRCNREVKFAPMLAWA 137

Query: 134 R-QLGADVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           R Q G + LATGHY R R       L V  DG+ R  + R +D  +DQSYFL+   Q+ L
Sbjct: 138 REQRGLERLATGHYARVRRADAADPLPVPGDGRGRHQLLRGLDARKDQSYFLYDLPQEVL 197

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGD 244
             L FPLG++ K   R  A   GL  A K +SQD+C      +  +   ++A +   +G+
Sbjct: 198 GRLVFPLGELTKPDTRQEAERHGLRTAHKPESQDLCLADH--HGSMRAFLDAHLPPRDGE 255

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV  +G+++GRH+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR         
Sbjct: 256 IVLQDGRVVGRHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAFNRVVVAPRREAARGDCV 315

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQD-----PVPVF----VQRNDDGVYVDFEKS 355
           +  +NW+      DA ++     V+ RS+ +     P+P        +    V ++F + 
Sbjct: 316 VGAVNWVSMAA-PDAPLE-VMVQVRYRSAPEWALLTPLPATEVDQAAQRPHRVRLEFAEE 373

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  +  GQA VFY  +     +LGGG+I 
Sbjct: 374 QFSITPGQAAVFYAGEV----LLGGGLIQ 398


>gi|327331848|gb|EGE73585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL096PA3]
          Length = 360

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K +VR  A
Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HNG  ++T
Sbjct: 175 TALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHNGYHHFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G
Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRS 389
              I G+ R+
Sbjct: 343 SATICGTDRA 352


>gi|295102218|emb|CBK99763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii L2-6]
          Length = 370

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 196/364 (53%), Gaps = 13/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCD 81
            ++AMSGGVDSSV A L++RDG+D  GVT++L  N    ++   +CC+ +D+ DA  V  
Sbjct: 13  ALIAMSGGVDSSVAAWLMQRDGFDCTGVTMRLTRNEAVNTEGLHTCCSERDIEDAAEVAY 72

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ + V D+   F+  +I  F   Y AG TP PC+DCNR +KF  LL      G D +
Sbjct: 73  AMDIPYEVLDFTADFQERIIDKFIRVYEAGGTPNPCIDCNRYMKFDHLLRWAEAHGLDHV 132

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY R      D+   R ++ + +D  +DQSY L+  TQ+QL  +R PLG + K  VR
Sbjct: 133 VTGHYARVEQ---DEATGRWLLKKGLDENKDQSYVLYNLTQEQLAHVRLPLGGLHKSEVR 189

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +     A K DSQDICFV  G Y   ++         GD + + G+ +G H+G + 
Sbjct: 190 AIAEQQHFVNARKHDSQDICFVPDGDYARFMEEFTGKHYPAGDFLDVGGKKVGTHSGAVR 249

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+AMG P++V   D  ++ V VGP   L    +Y  E+NW+     +  + 
Sbjct: 250 YTIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPESELFDTIVYANEVNWIAIPELKGPL- 308

Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   + R  Q   P  V     D   ++F++ +     GQA V Y  D     VLGG
Sbjct: 309 ---RVTARTRYHQTEQPATVYPAGPDSFRLEFDQPQRAPTPGQAVVLYQGDV----VLGG 361

Query: 381 GIIS 384
           G I+
Sbjct: 362 GTIT 365


>gi|313772254|gb|EFS38220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL074PA1]
 gi|313810119|gb|EFS47840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL083PA1]
 gi|313830448|gb|EFS68162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL007PA1]
 gi|313833819|gb|EFS71533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL056PA1]
 gi|314973449|gb|EFT17545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL053PA1]
 gi|314976129|gb|EFT20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL045PA1]
 gi|314983850|gb|EFT27942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA1]
 gi|315080547|gb|EFT52523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL078PA1]
 gi|315095996|gb|EFT67972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL038PA1]
 gi|327326276|gb|EGE68066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL096PA2]
 gi|327445830|gb|EGE92484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL043PA2]
 gi|327448188|gb|EGE94842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL043PA1]
 gi|328760764|gb|EGF74330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL099PA1]
          Length = 360

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K +VR  A
Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HNG  ++T
Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTRGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G
Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRS 389
              I G+ R+
Sbjct: 343 SATICGTDRA 352


>gi|206901317|ref|YP_002250407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740420|gb|ACI19478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus thermophilum H-6-12]
          Length = 345

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 207/365 (56%), Gaps = 27/365 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V V MSGGVDSS  A LLK++GY+VIG+T+ +  S               + DA ++ 
Sbjct: 3   IKVAVGMSGGVDSSTTAYLLKKEGYEVIGLTMNIAYS-------------DSIKDAEKIA 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+ H+  D  + F   +I  F  SY +G TP PC  CNR +KF  LL   ++LGA+ 
Sbjct: 50  KYLNIPHFYVDLRKEFEEQIIKYFIDSYKSGYTPNPCTFCNRIIKFGLLLKKAQELGAEY 109

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+R    V D+ K+  ++ R  DL++DQSYFL   TQ+Q+    FPLGD+ K  V
Sbjct: 110 LATGHYVRK---VWDEEKKVFLLKRAKDLKKDQSYFLAYLTQEQIEKSLFPLGDLTKNEV 166

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA E+GL ++DK +SQDICF+    Y   + R    +  +G I+  +G  +G H+G+ 
Sbjct: 167 RKLAEEIGLFVSDKEESQDICFLPDRDYRKFLSRYL--VEKKGKIITEDGVEVGYHDGVF 224

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           ++TIGQRRGL VA+G+P++V  +      V+V  RE +    +Y + +N+   G+  +  
Sbjct: 225 SFTIGQRRGLRVALGKPVYVKKIIPEEGIVVVADREKIFSREVYAKNVNY-PSGMPREKE 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           ++       IR + +P P  ++  ++  +Y+ FE+ +  +  GQ  V Y  D     VL 
Sbjct: 284 LE---VKAMIRYNMEPQPALLKILSEKEIYLTFEEPQWAITPGQILVCYKDDY----VLC 336

Query: 380 GGIIS 384
           GG+I 
Sbjct: 337 GGVIE 341


>gi|257437854|ref|ZP_05613609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199514|gb|EEU97798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 371

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 13/370 (3%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVY 74
           +N K    ++AMSGGVDSSV A L+++ GYD  G+T++L  N         +CC+ +D+ 
Sbjct: 9   QNTKRPGALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSEKDIE 68

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA  V   +++ + V D+   FR  +I  F   Y  G TP PC+DCNR +KF  LL    
Sbjct: 69  DAAEVAFAMDIPYEVLDFTADFREKIIEKFIRVYEMGGTPNPCIDCNRYMKFDHLLRWAE 128

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G + + TGHY R      D+   R ++ + +D  +DQSY L+  TQ+QL  +R PLG 
Sbjct: 129 SHGMEYVVTGHYARVEQ---DEATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHVRLPLGG 185

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR++A +     A K DSQDICFV  G Y   ++         GD +  NG+ +G
Sbjct: 186 LHKAEVREIAEKQHFINARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDENGKKVG 245

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            HNG + YTIGQR+GLG+AMG P++V   D  ++ V VGP E+L    +Y  E+NW+   
Sbjct: 246 THNGAVRYTIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPEENLFDRIVYADEVNWIAI- 304

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
                +    +   + R  Q      V    +G + ++F++ +     GQA V Y  D  
Sbjct: 305 ---PELTAPLRVTARTRYHQTEQAATVYPAGEGQFRLEFDQPQRAPTPGQAVVLYQGDV- 360

Query: 374 EARVLGGGII 383
              VLGGG I
Sbjct: 361 ---VLGGGTI 367


>gi|255324545|ref|ZP_05365662.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
 gi|255298451|gb|EET77751.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
          Length = 365

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/376 (39%), Positives = 202/376 (53%), Gaps = 26/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G++VIGV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 5   MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+  VI  F  SYA GETP PC+ CN  +KF  LL     LG D
Sbjct: 65  CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      + +DG  R    R +D  +DQSY L   + ++L    FP+GD  K  
Sbjct: 125 AVATGHYAT----IDEDGYMR----RSLDENKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           +R+ A   G   A K DS DICF+  G   +    + A I L  G IV   G  L  H+G
Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDG---NTQAFLGARIGLRPGMIVDQEGTELKEHDG 233

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G
Sbjct: 234 AWNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTSIQADLLKYLHPG 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +  D     F+C V++R+    VP    V R  D + ++ ++   GVA GQA V Y    
Sbjct: 294 MDGD-----FECEVQVRAHGSVVPCIAHVDREADEMRLELKEPLSGVARGQAAVLYLPSP 348

Query: 373 NEAR--VLGGGIISGS 386
           +E    V+G G I G+
Sbjct: 349 DELGDIVIGSGTICGT 364


>gi|325281886|ref|YP_004254428.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
 gi|324313695|gb|ADY34248.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
          Length = 364

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 210/373 (56%), Gaps = 21/373 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79
           RV++AMSGG+DS+V A LL   GY+++GVT + ++  SR   +++  CC+   +++A+R+
Sbjct: 5   RVLMAMSGGIDSTVAAMLLLEQGYELVGVTYRTFDNISRGCMEKEKGCCSVDSLFEAKRM 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +   H++ D  + F++ VI  F   Y  G TP PCV CN T+K+  L+    ++  D
Sbjct: 65  AQELGFEHHILDIRQEFKDTVITNFIGEYLQGRTPNPCVICNSTIKWGKLIETANEMRCD 124

Query: 140 VLATGHYIRSRLYVG-DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R    +G  DG  RR + +  DL +DQ+YFL+  TQ+ L    FPLG++ K 
Sbjct: 125 YIATGHYAR----IGHQDG--RRYLRKGADLSKDQTYFLWTLTQENLSRTLFPLGELTKP 178

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
            VR +A + G + ++ K +SQ+ICF+    Y   +         +   G+ V  +G+ LG
Sbjct: 179 EVRQIAFDHGYEKLSKKGESQEICFIPGNDYRTFLAEQVENYTEKYGPGNFVDTSGKRLG 238

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G  NYTIGQR+GLG+A+G+P+FV+ +    + V++G +E L+    + +EIN +   
Sbjct: 239 EHKGYPNYTIGQRKGLGIALGQPMFVIAIHPEDNTVVLGTKEELQGKSFFAKEINLMKYA 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                + DG +   KIR   +     +   D+ + V F ++   +  GQ+ VFY  +   
Sbjct: 299 ----KIPDGLEVTAKIRYRNEGKKASLYPEDNRLRVVFHETMDSITPGQSAVFYEGED-- 352

Query: 375 ARVLGGGIISGSK 387
             V+GGG+I G +
Sbjct: 353 --VVGGGVIEGKR 363


>gi|312129941|ref|YP_003997281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leadbetterella byssophila DSM 17132]
 gi|311906487|gb|ADQ16928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leadbetterella byssophila DSM 17132]
          Length = 368

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 19/377 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+V+G+T++   Y S   +K++  CC+   + DA
Sbjct: 3   KRGRVLVAMSGGIDSSLAAVLLHEQGYEVVGMTMKTWDYASSGGTKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   HY+ D    F ++VI  F   Y  G TP PCV CN  +K+  LL     L
Sbjct: 63  RAIAVNLGFPHYILDIRSEFGDSVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADNL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY + R   G     R ++ R  D  +DQSY L+  +Q+ L     PLGD+ 
Sbjct: 123 NCEFIATGHYAKIRQENG-----RYVISRGKDTTKDQSYVLWGVSQESLSRTLLPLGDLT 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++AR+ G  D+ +KS+S +ICFV    Y   +KR   G+  +   G+ V  NGQ+
Sbjct: 178 KAEIREMARQKGFYDLVNKSESYEICFVPDNDYRGFLKRRIEGLEEQVAGGNFVLENGQV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GL +A+G P+FV  + K ++ V++G  E L+ + + + ++N   
Sbjct: 238 VGKHEGYPFYTIGQRKGLKIALGYPVFVTEIRKETNEVVLGTEEYLKKNGMVVSKLNLQK 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
                +    G +   KIR        F+++ D D + V+F +    +A GQA VFY  D
Sbjct: 298 YASIPEG---GLESLTKIRYKDQGEMAFIRQTDADKIEVEFSQPVSAIAPGQAAVFYEGD 354

Query: 372 SNEARVLGGGIISGSKR 388
                V+GGG I  S R
Sbjct: 355 D----VIGGGWIMKSYR 367


>gi|113474569|ref|YP_720630.1| tRNA-specific 2-thiouridylase MnmA [Trichodesmium erythraeum
           IMS101]
 gi|123352667|sp|Q118B7|MNMA_TRIEI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110165617|gb|ABG50157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Trichodesmium erythraeum IMS101]
          Length = 359

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 214/380 (56%), Gaps = 37/380 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V +SGGVDSS  AA+L   GY V G+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KIIVGLSGGVDSSTAAAILHHQGYQVEGLTLWLM------KGKGQCCS-EGMVDAAYICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++ H++ D    F+  ++    + Y+AG TPLPC  CN+TVKF  +L+  R+ LG D 
Sbjct: 56  QLDIPHHIVDTRNLFQANIVDYLVTGYSAGITPLPCSQCNKTVKFGPMLAYGREKLGIDK 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D    R ++ R +D  +DQSYFL+  TQ  L    FPLG+M K   
Sbjct: 116 IATGHYARLDY---DSKSDRYLLKRAIDRNKDQSYFLYDLTQYLLAGSVFPLGEMVKSET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           R +A E GL  ADK +SQD+C V+       + D  K I      +G+IV   G++LGRH
Sbjct: 173 RRIAAEYGLKTADKPESQDLCLVESSGSMRAFLD--KYITPH---QGEIVDREGRVLGRH 227

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           +G+ +YTIGQR+GLGV+   PL+V+ LD   ++VIVG R+S       ++ +NW+     
Sbjct: 228 DGVHHYTIGQRKGLGVSAPHPLYVIDLDPAMNKVIVGDRDSATKMESTVKLVNWVSIAPP 287

Query: 317 EDAVVDGFKCFVKIRSSQDPV-----PVFV--QRNDDGVYVD--FEKSEVGVASGQACVF 367
             ++    +  V++R    PV     P+ V  ++  DG  V   FE++  G+  GQA V+
Sbjct: 288 STSI----RAEVQVRYRSLPVAANIIPLGVNEEKPQDGFRVKLIFEEAVFGITPGQAAVW 343

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  D     +LGGGII   K
Sbjct: 344 YEGDI----LLGGGIIENEK 359


>gi|320536235|ref|ZP_08036280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema phagedenis F0421]
 gi|320146893|gb|EFW38464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema phagedenis F0421]
          Length = 359

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 202/366 (55%), Gaps = 16/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++V +SGGVDS+V A LL   G++V GVT+Q+ +      +       QD+ DAR + 
Sbjct: 1   MKILVGLSGGVDSAVAAKLLLEQGHEVSGVTMQMISPVGEIIKSQE----QDIADARAIA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T+ +  +  D    FR  ++  FA +Y  G TP PC  CN+ +KF  LL    + G D 
Sbjct: 57  NTLGIDFFTLDLRSAFREEIMNYFAETYKQGLTPNPCFICNKKMKFRRLLDAALERGFDA 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    + D    R ++ +  D ++DQSYFL    Q QL  + FPLG+  K  V
Sbjct: 117 IATGHYAQ---IMRDLKTGRYLLLQGSDSKKDQSYFLALLNQFQLAHIMFPLGNYTKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A + DSQDICFV  G Y  +V+ +      EG+ +   G+I+G+H G+ 
Sbjct: 174 RKIAEKAGLISAHRPDSQDICFVPNGDYAKIVEALLPETFTEGNFLDTKGKIIGKHRGLH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGL +A GEP++VV  D  ++ V VG  E+L    +    +N++      + +
Sbjct: 234 HYTIGQRRGLALAFGEPVYVVSKDAKTNTVCVGSSENLFASALVAENVNFIAVEKLTEPI 293

Query: 321 VDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V    C VK R  Q+ +P   +   +D + V+F + E  VA+GQA V Y     +  V  
Sbjct: 294 V----CTVKTRYRQNEIPARLIPITEDSLRVEFLQPERAVAAGQALVCY----KDGAVFA 345

Query: 380 GGIISG 385
           GGII+ 
Sbjct: 346 GGIITA 351


>gi|205814900|sp|Q6MLR7|MNMA_BDEBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 360

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/369 (40%), Positives = 206/369 (55%), Gaps = 20/369 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           RV+VAMSGGVDSS  AALL   GY+VIG T+Q+  Y++    +  G+CC+  DV DAR V
Sbjct: 5   RVLVAMSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDARAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV + E +FR AVI PF  +Y  G+TPLPCV+CN  +KF  L+   R+L  D
Sbjct: 65  ADRLGIPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMRELECD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V DD  +  I     D  +DQ+YFLF    + +  L FP+GDMKK  
Sbjct: 125 YIATGHYAK---IVYDDKGKASIHTSTDDW-KDQTYFLFTIDPELVPKLLFPVGDMKKPQ 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGI--ALEGDIVHL-NGQILGR 255
           VR+ +   GL  A K DSQ ICFV    Y + +K  + + I  + +G I     GQ++  
Sbjct: 181 VREYSESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQVMAS 240

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI NYT GQ +GLG+   E LFV+ +D + + V VG     E   ++  E++ +   L
Sbjct: 241 HEGIHNYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVG-----EEKHLFANEVDVVDPKL 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
             D + DG    VKIR      P  V +   G  + F + +  V  GQA VFY     + 
Sbjct: 296 L-DEIQDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFY----RDR 350

Query: 376 RVLGGGIIS 384
           +++GGG I+
Sbjct: 351 QLVGGGWIT 359


>gi|313893420|ref|ZP_07826992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442061|gb|EFR60481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 353

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 201/362 (55%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 120 TGHYAQVNF---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G++LG+HNG+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKAKPKTGNIVTEDGEVLGKHNGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY    N  ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 347

Query: 382 II 383
           +I
Sbjct: 348 VI 349


>gi|284929056|ref|YP_003421578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [cyanobacterium UCYN-A]
 gi|284809515|gb|ADB95220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [cyanobacterium UCYN-A]
          Length = 352

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 209/367 (56%), Gaps = 27/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSSV AA L   GY+V G+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KIVVGLSGGVDSSVAAASLCDQGYEVSGLTLWLM------KGKGQCCS-EGMVDAAHICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+ HY+ D +E F+  +I    S Y +G TPLPC  CNR+VKF  +L   +Q L  D+
Sbjct: 56  QLNIPHYIVDAKELFKKNIIDYLVSGYKSGITPLPCSQCNRSVKFKPMLDYAQQELDCDL 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D    +  + R +D  +DQSYFL+   Q  L    FPLG+  KE  
Sbjct: 116 IATGHYARIRY---DKETDKYKLLRAIDPNKDQSYFLYDLPQDILAKTIFPLGEQTKEDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E  L  A+K +SQD+C ++   Y  +   +   I  + GDIV+  G++LG H GI
Sbjct: 173 RRMATEFKLRTANKPESQDLCLIES--YGSMASFLEKYIKPQTGDIVNSKGEVLGTHKGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++  EPL+V+ L+  +++V+VG R         ++++NW+   + +  
Sbjct: 231 HNYTIGQRKGLGISSSEPLYVLKLNLYNNQVVVGNRTEGFHSSCIIKDVNWI--SISKPD 288

Query: 320 VVDGFKCFVKIRS---SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +    K  V+ RS   S   +PV   R      + FE+S+ G+ +GQA V Y  D     
Sbjct: 289 ISMNVKVQVRYRSLAVSATIIPVENNRYK----LIFEQSQFGITAGQAAVLYDDDI---- 340

Query: 377 VLGGGII 383
           VL GGII
Sbjct: 341 VLAGGII 347


>gi|238019350|ref|ZP_04599776.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748]
 gi|237864049|gb|EEP65339.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748]
          Length = 363

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 202/362 (55%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 15  IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDS-----VPLAVTDAKKMCDF 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F + V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 70  LGIEHHVIDARDVFYDNVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +   Y  + G     + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 130 TGHYAQVN-YNEETGLYE--LHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G++LG+HNG+ NY
Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKDKPKSGNIVTEDGEVLGKHNGLFNY 246

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  +   + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 306

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY    N  ++LGG 
Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 357

Query: 382 II 383
           +I
Sbjct: 358 VI 359


>gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
 gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
          Length = 371

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/375 (39%), Positives = 205/375 (54%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MKKDPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R       DG+ +  M R +D  +DQ+YFL   TQ QL  + FP+G
Sbjct: 118 MSLGADYLATGHYARVEF---RDGEYK--MLRGLDDNKDQTYFLNQLTQDQLEKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR+LA++ GL  A K DS  ICF+ +  + + +   N   A  G++  ++G+I+
Sbjct: 173 DIEKSKVRELAKDAGLATAAKKDSTGICFIGERNFKEFLG--NYLPAQPGNMETMDGKIV 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP F +  D   + + VG     E L    I     +
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGAGEPWFAIGKDLKRNVLYVGQGFHNEMLYSDSIIAVNAS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+            F+C  K R  Q    V VQ   DG V V F++    V  GQA VFY
Sbjct: 291 WVT----HSEQPQEFECTAKFRYRQADSRVKVQILGDGKVQVIFDEPIRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 347 NGD----ECLGGGTI 357


>gi|124026416|ref|YP_001015531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. NATL1A]
 gi|205816901|sp|A2C457|MNMA_PROM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123961484|gb|ABM76267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. NATL1A]
          Length = 404

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 212/383 (55%), Gaps = 35/383 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  VVV +SGGVDSS+ AALL + G+DV G+TL L       K KGSCC+   + DA  +
Sbjct: 36  DQSVVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGI 88

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
           CD + + H++ D +E F+  +I      Y  G TPLPC  CN++VKFS++L  V      
Sbjct: 89  CDQLGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNI 148

Query: 139 DVLATGHYIRSRLY--------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + +ATGHY R R          +  +G +R  + R  DL +DQSYFL+   Q+ L    F
Sbjct: 149 EKIATGHYARIRYSNESFNENDLPSNGIKRHKLLRGKDLNKDQSYFLYDLPQEILGRTIF 208

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLN 249
           PLG++ KE  R  A +  L  A K +SQD+C  +   Y  +   I+  +  + G++V  +
Sbjct: 209 PLGELTKEITRIEALKHSLKTAKKPESQDLCLAEH--YGSMNAFIDKYLPQKKGEVVLKS 266

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           GQI+G HNGI ++TIGQR+GLG+A   PL VV +D + +RVIV PRE        +++IN
Sbjct: 267 GQIIGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDIN 326

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGVY---VDFEKSEVGVAS 361
           W+      +A  +  K  V+IR     V     P+F    ++  Y   + FE+ +  +  
Sbjct: 327 WVSI----EAPQEPIKVEVQIRYRSKAVKAKLIPIFDSNKENYCYQCHIHFEEDQFSITP 382

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQA VFY  D     VLGGG+IS
Sbjct: 383 GQAAVFYMGD----YVLGGGLIS 401


>gi|325107944|ref|YP_004269012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968212|gb|ADY58990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces brasiliensis DSM 5305]
          Length = 370

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 203/380 (53%), Gaps = 31/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKAS-------------KRKGSC 67
           RVV+AMSGGVDSS  A LL+  GY+VIG+ ++   N    S               K  C
Sbjct: 4   RVVLAMSGGVDSSAAAHLLQEQGYEVIGLFMRSGVNEETCSLDDPNALPVINLKAHKQGC 63

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C+  D  DARRV D +++  +  ++++ F   +   FA  Y AG TP PCV CN  +KF 
Sbjct: 64  CSASDAADARRVADELDIPFHALNFQDAF-GRIKDYFADEYLAGRTPNPCVQCNNWLKFG 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L    +Q+GA  +A+GHY R       DG+    + R +D  +DQSY LF      L  
Sbjct: 123 KLWEFAQQVGATKIASGHYAR---ITEQDGEYH--LERGLDPGKDQSYVLFGIRPDLLPH 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FP+G  +K  +R++A E GL  ADK DSQ+ICF+    Y   V+R       +G  V+
Sbjct: 178 ILFPVGGFQKGEIREMAGEAGLRTADKKDSQEICFIPDNDYAGFVRRYRGEQETKGQFVN 237

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G+ LG H G  ++TIGQRRGLG+A G P FV+ +   +  V++G  + L    +    
Sbjct: 238 TAGESLGEHRGYEHFTIGQRRGLGMAFGTPHFVLEIRPETCEVVLGSYDELGRTGLRADR 297

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           +NWL +      V D F+C  +IR    P    V+R ++D V V F++ + GVA GQA V
Sbjct: 298 MNWLAN------VGDEFRCTAQIRYQHRPAACTVRRLDNDQVEVHFDEPQHGVAPGQAFV 351

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y  D    RVLGGG I+ S
Sbjct: 352 CYDGD----RVLGGGWITES 367


>gi|33861847|ref|NP_893408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|81572901|sp|Q7TTQ1|MNMA_PROMP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33640215|emb|CAE19750.1| tRNA methyl transferase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 390

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 219/387 (56%), Gaps = 38/387 (9%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K+ K  +++V +SGGVDSS+ AALL  DG+ V G+TL L       K +GSCC+ + + 
Sbjct: 18  NKSKKQQKIIVGLSGGVDSSLSAALLIEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA  +C+ + ++H + D    F   V+      Y +G TPLPC  CN+ VKF ++L+ V 
Sbjct: 71  DAAGLCEDLGINHNILDSRVIFEREVVKKTTEGYESGFTPLPCSMCNKNVKFEEMLNFVI 130

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRR-------IMCRPMDLERDQSYFLFATTQQQLC 186
           +Q     +ATGHY R +    ++ K          ++ R  D  +DQSYFL++ +Q+ L 
Sbjct: 131 KQKEFTYIATGHYARVQKVSCENIKNYENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDI 245
            L  PLG++KKE  R  A  +GL  A K +SQD+C V+   Y  + K I+  I   EG+I
Sbjct: 191 RLILPLGNLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHIEPKEGEI 248

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            H+NG+ILG HNGI ++TIGQR+GLG+A  EPL+V  LDK  + V V  ++ L      +
Sbjct: 249 KHINGEILGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKKDLFKREAII 308

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY----VDFEKSE 356
           +EINW+      +A +   +   +IR   +P     VPV   +N+D +     + FE ++
Sbjct: 309 KEINWVSI----EAPLKEIEVEAQIRYRSEPVKGILVPV---KNEDNLTKKFKLIFEDNQ 361

Query: 357 VGVASGQACVFYTSDSNEARVLGGGII 383
             +  GQA VFY  +     +LGGG+I
Sbjct: 362 SSITPGQAAVFYKDEI----LLGGGLI 384


>gi|300855514|ref|YP_003780498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium ljungdahlii DSM 13528]
 gi|300435629|gb|ADK15396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium ljungdahlii DSM 13528]
          Length = 358

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 215/364 (59%), Gaps = 15/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80
           +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++   K  +  +G CC+   V DAR V 
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQVWQDDKYYEGMEGGCCSLSAVDDARLVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YV ++   F+  VI  F   Y  G TP PCV CN+ +KF +LL     LGAD 
Sbjct: 64  YNLGIPYYVMNFRNEFKKCVIDYFIDEYTKGRTPNPCVACNKYIKFDELLKRAMDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      V D    R ++ +  D ++DQ+Y L+  TQ QL     P G  KKE +
Sbjct: 124 VATGHYATVEK-VND----RYVLKKSKDSKKDQTYALYNLTQFQLEHTLMPCGIYKKEQI 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+++GL + +K DS++ICF+    +   +KR+      EG+ V  +G++LG+H GI 
Sbjct: 179 REIAKKIGLAVHNKKDSEEICFIPDNDHGSYIKRVAPNKVKEGNFVDKSGKVLGKHGGIT 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A G P++V+ ++   + V++G  + +  +++  +++N++    FE  +
Sbjct: 239 YYTIGQRKGLGIAFGIPMYVIDINPLKNEVVLGGEKDIFKNKLIAKDLNFMP---FE-KL 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   KIR S  P    +   ++D V V+F++++  +  GQ+ VFY  D     ++G
Sbjct: 295 DKPMRIQAKIRYSAKPADALISAIDEDRVKVEFDENQRAITKGQSVVFYDGDI----LVG 350

Query: 380 GGII 383
           GG+I
Sbjct: 351 GGVI 354


>gi|237785842|ref|YP_002906547.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|259495826|sp|C4LJJ9|MNMA_CORK4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|237758754|gb|ACR18004.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 372

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 203/369 (55%), Gaps = 23/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA L  +G++VIGV L L  S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVMAAMSGGVDSSVAAARLVAEGHEVIGVHLALA-STPTTLRVGSRGCCSLEDSGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RFR  V+ PF +SY  GETP PC+ CN  +KF  LL     LG 
Sbjct: 60  VADALGIPFYVWDFSDRFREDVVDPFINSYEMGETPNPCLRCNEKIKFQALLDRGIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R +     DG+ RR     +D  +DQSY L     +QL    FPLGD +K 
Sbjct: 120 DAVATGHYARLK-----DGELRRA----IDDNKDQSYVLGVLNDEQLAHCLFPLGDTRKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL  A K DS DICF+  G     +   + G+   GD+   +G ++G H+G
Sbjct: 171 DIRKEAEAAGLVTASKPDSHDICFIPDGNTKAFLGN-HIGVR-SGDLKDQDGNVIGHHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           I  +TIGQR+GLG+      G+P +V  +D ++  V VG R+ L V R+Y   +  L + 
Sbjct: 229 IYGFTIGQRKGLGLPGPAPDGKPRYVTDIDADTGTVTVGTRDDLRVGRLYADRLIRLDE- 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E +     +C V++R+    V   V  +D    +D      GVA GQA V Y  D + 
Sbjct: 288 -HEGSTQ---ECQVQVRAHGGVVDATVTIDDGVATIDLHSPLTGVARGQAAVIYRPDPDG 343

Query: 375 ARVLGGGII 383
             VLG G I
Sbjct: 344 DIVLGSGTI 352


>gi|302871531|ref|YP_003840167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574390|gb|ADL42181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 360

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF+ +E F+  VI  F   Y  G TP PC+ CNR +KF   L     LG D
Sbjct: 64  AHILDIPYYVFNMKEDFKKEVINYFIDEYIKGRTPNPCIMCNRKIKFELFLKRAMVLGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D+   R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+    
Sbjct: 181 VRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++   LF D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI---LF-DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     +   ++ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKIRYTAKETKTKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|222529697|ref|YP_002573579.1| tRNA-specific 2-thiouridylase MnmA [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456544|gb|ACM60806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 360

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 208/368 (56%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG D
Sbjct: 64  AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D    R I+ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDKSLYRYILKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+    
Sbjct: 181 VRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++   LF D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI---LF-DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     +   ++ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKIRYTAKEAKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|240169595|ref|ZP_04748254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium kansasii ATCC 12478]
          Length = 363

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 204/375 (54%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV L L ++  ++ R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-STAPSTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F   VI  F SSYA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFNEDVIDDFVSSYARGETPNPCVRCNQRIKFSALSARALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       DG+ RR     +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARL-----SDGRLRRA----VDRDKDQSYVLAVLTARQLRHALFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A   GL +ADK DS DICF+  G   D    + A I +  G +V  +G +L  H+
Sbjct: 171 QIRAEAARRGLAVADKPDSHDICFIPSG---DTRAFLGARIGVRRGLVVDADGAVLATHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G P +V  +D  ++ V VG    L+VH +  R   +   
Sbjct: 228 GVHEFTIGQRKGLGIPGPGPDGRPRYVTAIDAETATVRVGDVSDLDVHALTGRAPVFTA- 286

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           G      VD   C V++R+  + V    +   D + V       GVA GQ  V Y  D  
Sbjct: 287 GAAPSGPVD---CAVQVRAHGETVAATAELVGDELLVRLHAPLRGVARGQTAVLYRPDPG 343

Query: 374 EARVLGGGIISGSKR 388
              VLG   I+GS R
Sbjct: 344 GDEVLGSATIAGSHR 358


>gi|188997646|ref|YP_001931897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932713|gb|ACD67343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 352

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 211/366 (57%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSS  A LLK+ GY+V+G++L+  +          CC+ +D+ DA++V +
Sbjct: 3   KIVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCELDTQVCCSDKDILDAKKVAE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV ++++ F   VI  F   Y +G TP PC  CN+ VK        + LG D L
Sbjct: 63  FLEIPHYVINWKDIFEKKVINYFIEVYQSGLTPNPCSICNKEVKTGLFAKYIKSLGFDYL 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHYIR+ +    DG   +++ R +D  +DQSYF+    ++ +  L FPLG++ KE VR
Sbjct: 123 ATGHYIRTDI---QDG--IKVLKRGIDKNKDQSYFMALVEKEVVDTLTFPLGNLTKEEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A+E  + ++ K +S +ICF +     +  K +N     EG+IVH++G++LGRH GI +
Sbjct: 178 KIAQENRIPVSQKEESFEICFTKGKSPEEYFKTLNIKTN-EGEIVHISGKVLGRHKGIES 236

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGL +A  EPL+V+  D   ++++VG ++ L  +++  ++ N+L    FE    
Sbjct: 237 YTIGQRRGLNIAWKEPLYVIEKDALKNKIVVGEKDYLLTNKVVAKDFNFLVP--FEKWK- 293

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K  V+ R  Q P+       D + + V FE+     A GQ    Y  D+    +LGG
Sbjct: 294 ---KIEVQGRYKQKPIKAKEYHLDRENLTVIFEEKVPKFAPGQILAVYDGDT----LLGG 346

Query: 381 GIISGS 386
           GIIS S
Sbjct: 347 GIISRS 352


>gi|86604778|ref|YP_473541.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-3-3Ab]
 gi|123508144|sp|Q2JY34|MNMA_SYNJA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86553320|gb|ABC98278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. JA-3-3Ab]
          Length = 370

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 201/363 (55%), Gaps = 19/363 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L + ++  +P   R+V A+SGGVDSS VAA+L   GY V GVTL L       + KG CC
Sbjct: 8   LVAPEIAGSPSRPRIVAALSGGVDSSTVAAILHEQGYAVEGVTLWLM------RGKGQCC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
               + DA  +C+ + + H++ D  E F+  ++    + YA G TPLPC  CN+ VKF  
Sbjct: 62  T-DGLVDAAAICEQLGIPHHIVDSRELFQANIVDYLVAGYADGITPLPCSQCNKLVKFGP 120

Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           LL+  R+ LG   +ATGHY R R    +    R  + R +D ++DQSYFL+  +Q+ L  
Sbjct: 121 LLTYARETLGISQIATGHYARVRF---NSELGRYQLLRAVDRQKDQSYFLYDLSQEHLAH 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIV 246
             FPLG+  K   R +A   GL  A+K +SQD+C ++   Y  +   ++  +    G+IV
Sbjct: 178 SLFPLGNYTKAQTRQIAARYGLVTANKPESQDLCLIE--TYGSMRNFLDQHLGQRPGEIV 235

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
              G++LG H GI +YT+GQR+GLG+A   PL+VV +D   +RV+VG RE       ++R
Sbjct: 236 DTQGRVLGSHQGIHHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEATQAEAWVR 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQAC 365
           ++NW+       A  +     V++R     VP   +  + + V + F + + GV  GQA 
Sbjct: 296 QVNWVST----PAPDEPLAVEVQVRYRTPAVPATLIPESPERVKLQFAEPQFGVTPGQAA 351

Query: 366 VFY 368
           V+Y
Sbjct: 352 VWY 354


>gi|315092805|gb|EFT64781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL060PA1]
          Length = 360

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K +VR  A
Sbjct: 120 HYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HNG  ++T
Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHNGYHHFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SGE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G
Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----LVVG 342

Query: 380 GGIISGSKRS 389
              I G+ R+
Sbjct: 343 SATICGTDRA 352


>gi|296119548|ref|ZP_06838106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295967431|gb|EFG80698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 361

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 149/374 (39%), Positives = 203/374 (54%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G++V+GV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 1   MRVLVAMSGGVDSSVAAARAVEAGHEVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+ AVI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSEEFKEAVITDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      +  DG  R    R +D  +DQSY L   T ++L    FP+GD  K  
Sbjct: 121 AVATGHYAT----LDKDGYMR----RSLDENKDQSYVLGVITAEELSYCYFPIGDTPKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           +R+ A+  G   A K DS DICF+  G   +    + A I +  G IV  +G  L  H+G
Sbjct: 173 IREEAKRHGFSTASKPDSYDICFIPDG---NTQAFLGARIGMRPGMIVDQDGTELREHDG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G P +V  +D  +  V VG RE+L+V RI    + +L   
Sbjct: 230 AWNYTIGQRKGLDIKAPAADGRPRYVTGIDAQTGTVTVGSREALKVTRISADRLKYL--- 286

Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +DG F C V++R+    V     V R+ D + +   +   GVA GQA V Y   
Sbjct: 287 ---HPAMDGEFDCDVQVRAHGSVVSCHAEVDRDADAMILTLNEPLSGVAPGQAAVLYFPS 343

Query: 372 SNEAR--VLGGGII 383
            +E    V+G G I
Sbjct: 344 PDELGDIVIGSGTI 357


>gi|257466420|ref|ZP_05630731.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917577|ref|ZP_07913817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691452|gb|EFS28287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 350

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 212/381 (55%), Gaps = 40/381 (10%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +++  +  K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++              C  
Sbjct: 3   NMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TCHA 49

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DA++VC+ + + HYV D  E F   V+  F   Y  G+TP PC+ CNR +KF  LL
Sbjct: 50  EDA-DAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGKLL 108

Query: 131 SVTRQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 GA  +ATGHY +     L VGDDG             +DQ YFL    +++L  
Sbjct: 109 DFILGQGAQYMATGHYTKLVDGHLSVGDDGG------------KDQVYFLSQVPKEKLKK 156

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV 246
           + FP+G+++K  VR+LA+E+G+ +  K DSQ+ICFV+ GK  + ++++    +  +G+IV
Sbjct: 157 IIFPVGELEKTQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIV 216

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             NG+ILG+HNG+  YTIGQR+GLG++   PL+VV L+   + +IVG  E L   ++   
Sbjct: 217 DKNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAE 276

Query: 307 EIN-WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQA 364
           + N +L D L E   +    C+ K RS        ++   D V   F  ++V  V  GQ 
Sbjct: 277 QCNLFLVDKLEE---LHNMNCYAKTRSRDTLHACRLEVIGDEVIAHFIDNKVRAVTPGQG 333

Query: 365 CVFYTSDSNE-ARVLGGGIIS 384
            VFY    NE  +V+ GG I 
Sbjct: 334 VVFY----NELGQVIAGGFIK 350


>gi|226365929|ref|YP_002783712.1| tRNA-specific 2-thiouridylase MnmA [Rhodococcus opacus B4]
 gi|254811458|sp|C1B1S2|MNMA_RHOOB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226244419|dbj|BAH54767.1| putative tRNA uridine-sulfurtransferase [Rhodococcus opacus B4]
          Length = 364

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 206/374 (55%), Gaps = 25/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F +SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  ++L  G       ++ R +D ++DQSY L   T +QL    FP+GD  K+
Sbjct: 120 DAVATGHY--AQLENG-------VLRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256
            +R+ A E GL +A+K DS DICF+  G   D    + A I +  G +V  + G++L  H
Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSG---DTRAFLGAHIGVRPGSVVDADSGEVLAEH 227

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G+  +TIGQR+GLGV    A G+P +V  ++  +  V VG    LEVH I      W  
Sbjct: 228 EGVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPETGTVRVGSARDLEVHAITADRAVWTS 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                  V    +C V++R+         +  D G+ +   +   GVA GQA V Y +D 
Sbjct: 288 GRAPSGPV----ECTVQVRAHGGLAEAVAEAVDGGIRISLREPLTGVAKGQAAVLYRTDP 343

Query: 373 NEARVLGGGIISGS 386
               VLG G ISG+
Sbjct: 344 AGDIVLGSGTISGT 357


>gi|312127260|ref|YP_003992134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777279|gb|ADQ06765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 360

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 207/368 (56%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ S    +     SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQSGCGEELITGKSCCSLYAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     +G D
Sbjct: 64  ANILDIPYYVFNMKDDFKKMVIDYFVDEYIKGRTPNPCIMCNRKIKFEFFLKKAITIGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D+   R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIVEYDNSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A+K DSQ+ICF+    Y   +++   GI  +G  V   G ILGR    
Sbjct: 181 VRRLAEKFKLPVANKPDSQEICFIPDNNYGKFIEK-ETGIKEDGIYVDTEGNILGRSKTY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++VI+G  + +    +   ++N++      D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVAIKPEENKVILGEEDKIYADNLVATDLNFIPF----DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     +   D+ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKIRYTAKEAKARIIPIEDNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|313837818|gb|EFS75532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL037PA2]
 gi|314927301|gb|EFS91132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL044PA1]
          Length = 360

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 207/375 (55%), Gaps = 25/375 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGG+DS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY ++++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K  VR  A
Sbjct: 120 HYAQAKVI---DGVTK--LYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++GRHNG   +T
Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGRHNGYHRFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L V+ I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWC-----SGE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
             D +   V++R+  DPVP  +     GV V+ E    GVA GQA VFY  D     V+G
Sbjct: 287 PADTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRSDAVEE 394
              I G+ R+    E
Sbjct: 343 SATICGTDRAGTTAE 357


>gi|205822033|sp|A4X484|MNMA_SALTO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 360

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 205/373 (54%), Gaps = 26/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G+  CC  +D  DARR
Sbjct: 4   VRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +++  YV+D  +RF+  V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 63  AADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +G DG    ++ R +DL +DQSY L   T++QL    FPLGD  K 
Sbjct: 123 DAVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILGR 255
            VR  A   GL +ADK DS DICFV  G     + R      G  ++GD     G+++GR
Sbjct: 175 QVRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTTPGDVVDGD----TGEVVGR 230

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   YT+GQRRGL +      G P +V+ +   ++ V VGP E+L V ++  R   W+
Sbjct: 231 HTGAYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWI 290

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G     D V    +C V++R+  D VP  V   DDG+  +  +   GVA+GQA V Y  D
Sbjct: 291 GGPRPADPV----ECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPD 346

Query: 372 SNEARVLGGGIIS 384
                VLG   I+
Sbjct: 347 PAGDIVLGSATIA 359


>gi|257458053|ref|ZP_05623212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema vincentii ATCC 35580]
 gi|257444766|gb|EEV19850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema vincentii ATCC 35580]
          Length = 358

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 199/364 (54%), Gaps = 17/364 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDS+VVA LL   G++V GVTL++ N +    ++ S    + + +A +  
Sbjct: 1   MKIAVGLSGGVDSTVVAKLLMEQGHEVCGVTLRVLNEKNPVAKEQS---ERIIGEAAQAA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H V+D+   F+  +I  F  SY  GETP PC  CN+ +KF  LL    Q G D 
Sbjct: 58  RILGIPHRVYDFRAEFQTHIIDYFIQSYCNGETPNPCYICNKQIKFGLLLERALQEGCDA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  +   R ++ R +D ++DQSYFL   +Q+QL    FPL ++ K  V
Sbjct: 118 VATGHYAK----VFQESSGRYVLERGVDAQKDQSYFLALLSQEQLSRTLFPLAELTKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A KSDSQDICFV  G Y  V++        +GD + +NG  +G H G+ 
Sbjct: 174 RLIAEKAGLVNAHKSDSQDICFVPDGDYTAVIEAFAPDAFPQGDFIDMNGIKVGTHRGLH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL +  G P++VV      + V V P   L     ++R++NW+ +   E   
Sbjct: 234 RYTIGQRRGLALPFGYPIYVVEKSAEHNTVTVAPENGLFAAACFVRDVNWIAEIPNEP-- 291

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F   VK R  Q      ++   D+ V + F + E  VA GQA VFY      +RVLG
Sbjct: 292 ---FYAEVKTRYRQQLKKARIEPIGDNRVRIVFTEPERAVARGQAAVFYRG----SRVLG 344

Query: 380 GGII 383
           GGII
Sbjct: 345 GGII 348


>gi|158338655|ref|YP_001519832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acaryochloris marina MBIC11017]
 gi|205810972|sp|B0CE39|MNMA_ACAM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158308896|gb|ABW30513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acaryochloris marina MBIC11017]
          Length = 355

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 209/371 (56%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA LK  GY+VIG+TL L         KG CC+   + DA ++C+
Sbjct: 3   KVVVGLSGGVDSSVAAASLKEKGYEVIGLTLWLMQG------KGQCCS-DGLVDAAQLCE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++ H+V D  + F N +I      Y  G TPLPC  CN+TVKF  +L+  R +L  D 
Sbjct: 56  DLDIPHHVVDSRDLFSNNIIDYLVEGYQQGITPLPCSQCNKTVKFGPMLNYARHELDTDT 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+   +  KR +++ R +D  +DQSYFL+   Q  L    FPLGD  K   
Sbjct: 116 IATGHY--ARIAYSEKEKRYQLL-RAVDRNKDQSYFLYDLDQDLLSGTVFPLGDHTKTET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A ++ L  A+K +SQD+C ++   +  +   ++  I    G+IV   G ILG H G+
Sbjct: 173 RRMATQLDLHTAEKPESQDLCLIE--AHGSMQTFLDQYIETHPGEIVDQEGNILGHHQGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            ++TIGQRRG+GVA   PL+VV LD   +RVIVG RE+       ++ +NW+     ++ 
Sbjct: 231 HHFTIGQRRGIGVAAPHPLYVVDLDPGKNRVIVGDRETALKTECMVKRVNWVSIAPPQNP 290

Query: 320 VVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           +       V++R    P     +P+  +     V + FE  + G+A GQA V+Y    ++
Sbjct: 291 I----HAEVQVRYRSKPTGVTIIPLDAEAPGGRVKLVFEDPQFGIAPGQAAVWY----DQ 342

Query: 375 ARVLGGGIISG 385
             +LGGGII  
Sbjct: 343 EILLGGGIIEA 353


>gi|145593765|ref|YP_001158062.1| tRNA-specific 2-thiouridylase MnmA [Salinispora tropica CNB-440]
 gi|145303102|gb|ABP53684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinispora tropica CNB-440]
          Length = 394

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 205/373 (54%), Gaps = 26/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G+  CC  +D  DARR
Sbjct: 38  VRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +++  YV+D  +RF+  V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 97  AADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 156

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +G DG    ++ R +DL +DQSY L   T++QL    FPLGD  K 
Sbjct: 157 DAVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKT 208

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILGR 255
            VR  A   GL +ADK DS DICFV  G     + R      G  ++GD     G+++GR
Sbjct: 209 QVRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTTPGDVVDGD----TGEVVGR 264

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   YT+GQRRGL +      G P +V+ +   ++ V VGP E+L V ++  R   W+
Sbjct: 265 HTGAYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWI 324

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G     D V    +C V++R+  D VP  V   DDG+  +  +   GVA+GQA V Y  D
Sbjct: 325 GGPRPADPV----ECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPD 380

Query: 372 SNEARVLGGGIIS 384
                VLG   I+
Sbjct: 381 PAGDIVLGSATIA 393


>gi|205821882|sp|A0QJE5|MNMA_MYCA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 358

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 205/375 (54%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
            +R+ A   GL +A+K DS DICF+  G     + +RI       G +V+ +G +L  H+
Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVNADGTVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +   
Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A    F+C V++R+  +      +   D + V       GVA GQ    Y  D +
Sbjct: 288 ----TAPSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPD 343

Query: 374 EARVLGGGIISGSKR 388
              VLG   I+G+ R
Sbjct: 344 GDEVLGSATIAGTSR 358


>gi|254776291|ref|ZP_05217807.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 358

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 205/375 (54%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDAFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
            +R+ A   GL +A+K DS DICF+  G     + +RI       G +V+ +G +L  H+
Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVNADGTVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +   
Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A    F+C V++R+  +      +   D + V       GVA GQ    Y  D +
Sbjct: 288 ----TAPSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPD 343

Query: 374 EARVLGGGIISGSKR 388
              VLG   I+G+ R
Sbjct: 344 GDEVLGSATIAGTSR 358


>gi|312135463|ref|YP_004002801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor owensensis OL]
 gi|311775514|gb|ADQ05001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor owensensis OL]
          Length = 360

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG D
Sbjct: 64  AHILDIPYYVFNMKDNFKKEVINYFVGEYIKGRTPNPCIMCNRKIKFELFLKKAIALGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D+   R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEILSKTIFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+    
Sbjct: 181 VRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +  + ++V++G  + +    +   ++N++   LF D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPDENKVVLGEEDKIFSDGLIASDLNFI---LF-DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     +   ++ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKIRYTAKETKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|168181589|ref|ZP_02616253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|237796359|ref|YP_002863911.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum Ba4 str.
           657]
 gi|182675018|gb|EDT86979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|229264171|gb|ACQ55204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
          Length = 353

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 206/363 (56%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V +  + F+  VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++  RR+++ +  D ++DQ+Y ++   Q QL     P G+ +KE +R+
Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++     E ++  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFIPFDKLEKSM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     ++GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLGNNKVKVVFKNKQRAITKGQSVVFYDKDM----LVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|126434444|ref|YP_001070135.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. JLS]
 gi|166235066|sp|A3PXL7|MNMA_MYCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126234244|gb|ABN97644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. JLS]
          Length = 359

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 203/374 (54%), Gaps = 26/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D +++  YV+D+ +RF+  VI  F +SY  GETP PCV CN  +KFS L      LG 
Sbjct: 60  VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+ RR     +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DALATGHYARL-----SDGRLRRA----VDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A E GL +ADK DS DICF+  G   D    + A I +  G +V   G  L  H 
Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSG---DTRAFLGARIGVRRGAVVDAGGTKLAEHE 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G+P +V  +D  +  V VG  E L+V R+      +   
Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVSRLTGERPVFTSG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDS 372
             F   V    +C V++R +   +   V  +D GV  V+      GVA+GQ  V Y  D 
Sbjct: 288 AAFGGPV----ECQVQVR-AHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDP 342

Query: 373 NEARVLGGGIISGS 386
               VL    ISG+
Sbjct: 343 EGDEVLASATISGA 356


>gi|108798844|ref|YP_639041.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. MCS]
 gi|119867959|ref|YP_937911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. KMS]
 gi|123179026|sp|Q1BAU9|MNMA_MYCSS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235067|sp|A1UE63|MNMA_MYCSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|108769263|gb|ABG07985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. MCS]
 gi|119694048|gb|ABL91121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. KMS]
          Length = 359

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 203/374 (54%), Gaps = 26/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D +++  YV+D+ +RF+  VI  F +SY  GETP PCV CN  +KFS L      LG 
Sbjct: 60  VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+ RR     +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DALATGHYARL-----SDGRLRRA----VDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A E GL +ADK DS DICF+  G   D    + A I +  G +V   G  L  H 
Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSG---DTRAFLGARIGVRRGAVVDAGGTKLAEHE 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G+P +V  +D  +  V VG  E L+V R+      +   
Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVWRLTGERPVFTSG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDS 372
             F   V    +C V++R +   +   V  +D GV  V+      GVA+GQ  V Y  D 
Sbjct: 288 AAFGGPV----ECQVQVR-AHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDP 342

Query: 373 NEARVLGGGIISGS 386
               VL    ISG+
Sbjct: 343 EGDEVLASATISGA 356


>gi|205814682|sp|Q11UP4|MNMA_CYTH3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 209/378 (55%), Gaps = 18/378 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSSV A +L   GY+VIG+T++   Y +   SK++  CC+   + DA
Sbjct: 3   KKGRVLVAMSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +  ++   HY+ D  E F + VI  F   Y  G TP PCV CN  +K+  LL    ++
Sbjct: 63  RNIAVSLGFPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKM 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D +ATGHY + R         R ++ + +D  +DQSY L+  +QQ L    FPLG + 
Sbjct: 123 DCDFIATGHYAQVR-----SENNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLH 177

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A E G +D+ +KS+S +ICFV    Y   +KR N G+  E   G+ V  +G +
Sbjct: 178 KTDIRAMAAERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+ +G P+FV  + K ++RV++G  E L  + +++ +   L 
Sbjct: 238 VGKHEGYPFYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQ---LI 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              +E+      +   K+R + D     +++  D + V F +    +A GQA VFY  + 
Sbjct: 295 MSKYENLKGIQKQSITKVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND 354

Query: 373 NEARVLGGGIISGSKRSD 390
               V+GGG I  S + D
Sbjct: 355 ----VIGGGWIKSSFKQD 368


>gi|209528181|ref|ZP_03276652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrospira maxima CS-328]
 gi|209491390|gb|EDZ91774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrospira maxima CS-328]
          Length = 359

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 207/372 (55%), Gaps = 30/372 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSS  AA+L   GY+V+G+TL L       + KG CC+ + + DA  +C+
Sbjct: 3   KIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCS-EGMVDAAHICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            + + HY+ D  + F+  +I      Y AG TPLPC  CNR VKF  +L   + +L  + 
Sbjct: 56  QLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNINH 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       D   R  + R +D  +DQSYFL+  TQ  L  + FPLG++ K   
Sbjct: 116 IATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDLLAGVVFPLGEVPKSET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A +  L  ADK +SQD+C V+  G     + +   G   +G+IV   G++LG H+GI
Sbjct: 173 RRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDTEGRVLGEHDGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLG++  EPL+V+ +D   +RV+VG R+ +      +R +NW+      + 
Sbjct: 231 HHYTIGQRRGLGISAAEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIAPPSEP 290

Query: 320 VVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +    +  V+IR    P+PV V         +    V + F++   G+  GQA V+Y+ D
Sbjct: 291 I----RAEVQIRYRSKPLPVTVVPLSSEADPQIGSRVRLIFDEPIFGITPGQAAVWYSED 346

Query: 372 SNEARVLGGGII 383
                +LGGG+I
Sbjct: 347 ----LLLGGGVI 354


>gi|257452558|ref|ZP_05617857.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|317059098|ref|ZP_07923583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684774|gb|EFS21609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
          Length = 350

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 212/381 (55%), Gaps = 40/381 (10%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +++  +  K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++              C  
Sbjct: 3   NMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TCHA 49

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DA++VC+ + + HYV D  E F   V+  F   Y  G+TP PC+ CNR +KF  LL
Sbjct: 50  EDA-DAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGKLL 108

Query: 131 SVTRQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 GA  +ATGHY +     L VGDDG             +DQ YFL    +++L  
Sbjct: 109 DFILGQGAQYMATGHYTKLVDGHLSVGDDGG------------KDQVYFLSQVPKEKLKK 156

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV 246
           + FP+G+++K  VR+LA+E+G+ +  K DSQ+ICFV+ GK  + ++++    +  +G+IV
Sbjct: 157 IIFPVGELEKIQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIV 216

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             NG+ILG+HNG+  YTIGQR+GLG++   PL+VV L+   + +IVG  E L   ++   
Sbjct: 217 DKNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAE 276

Query: 307 EIN-WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQA 364
           + N +L D L E   +    C+ K RS        ++   D V   F  ++V  V  GQ 
Sbjct: 277 QCNLFLVDKLEE---LHNMNCYAKTRSRDTLHACRLEVLGDEVIAHFIDNKVRAVTPGQG 333

Query: 365 CVFYTSDSNE-ARVLGGGIIS 384
            VFY    NE  +V+ GG I 
Sbjct: 334 VVFY----NELGQVIAGGFIK 350


>gi|315077923|gb|EFT49974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL053PA2]
          Length = 360

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
            Y R+++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K +VR  A
Sbjct: 120 PYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++G HNG  ++T
Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L VH I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G
Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRS 389
              I G+ R+
Sbjct: 343 SATICGTDRA 352


>gi|291535108|emb|CBL08220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis M50/1]
          Length = 359

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 5   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLSAVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV ++++ F+  V+  F + Y  G TP PC+ CNR VK+  LL+ +  +GAD
Sbjct: 65  ADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLNRSLAIGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +      R  +   +   +DQ+Y L+  TQ+QL     P+G   K+ 
Sbjct: 125 YIATGHYAR----IEQLSNGRYAIKNSVTAAKDQTYALYNLTQEQLSHTLMPVGAYHKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNG 258
           +R +A E+GL +A K DSQ+ICF+    Y   + R     +   G+ V  +G ++G+H G
Sbjct: 181 IRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDGTVVGKHKG 240

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A G P+FV  +   ++ V++G    +  + +    IN++     +D
Sbjct: 241 ITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINFMSIPDIQD 300

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            ++       KIR S       V R  +D ++ +F +    V  GQA V Y  +     V
Sbjct: 301 EML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYDGE----YV 352

Query: 378 LGGGII 383
            GGG I
Sbjct: 353 AGGGTI 358


>gi|253582177|ref|ZP_04859400.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC
           27725]
 gi|251835716|gb|EES64254.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC
           27725]
          Length = 362

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 210/375 (56%), Gaps = 37/375 (9%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D+N ++  + VAMSGGVDSS VA LLK+ GY+V G+T++              C  +D  
Sbjct: 18  DENNQNTTIAVAMSGGVDSSTVAYLLKKQGYNVFGITMK-------------TCKPEDS- 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA++VCD + + +Y+ D  + F+  V+  F   Y  G+TP PC+ CN+ +K   L+   R
Sbjct: 64  DAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLIDFAR 123

Query: 135 QLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             GAD +ATGHY + +   L +GDD              +DQ YFL    ++ L  L+FP
Sbjct: 124 SKGADFMATGHYTQMKDGILSMGDDAG------------KDQVYFLSQMKKENLKYLKFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250
           +G+++K  VR+LA+ +G+ +  K DSQ+ICFV+ GK  + +  +  G A + G+IV  NG
Sbjct: 172 IGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMTDGKAGKPGNIVDTNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +ILG+H G+  YTIGQR+GLG+A   PL+V+ LD   + V+VGP E L    +    IN 
Sbjct: 232 KILGKHKGLSFYTIGQRKGLGIAQENPLYVIELDSKRNCVVVGPNEMLFKDNLIAENINL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQACVFY 368
           +   L     +D  +C+ K RS        ++   +G + V+F  ++V  V  GQ  VFY
Sbjct: 292 I--SLNNIKELDEMECWAKTRSRDQLHKCKLEVLSNGNIKVNFIGNQVRAVTPGQGVVFY 349

Query: 369 TSDSNEARVLGGGII 383
             D    +VLG G I
Sbjct: 350 DKDH---KVLGSGFI 361


>gi|116073367|ref|ZP_01470629.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9916]
 gi|116068672|gb|EAU74424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9916]
          Length = 520

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 36/392 (9%)

Query: 10  NSLD-LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
            +LD L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CC
Sbjct: 144 QALDRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACC 197

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A + + DA  +C+ + V H+V D+ E F+  ++      YA G TPLPC  CNR VKF  
Sbjct: 198 A-EGLVDAAGICEQLGVPHHVVDFREHFKEQIVQFLVDGYAEGVTPLPCSRCNREVKFGP 256

Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +L+   R+   D +ATGHY R R     D  R +++ R +D  +DQSYFL+   Q+ L  
Sbjct: 257 MLAWAERERSIDRIATGHYARVRHGDQSDNGRHQLL-RGLDQRKDQSYFLYDLPQEALGR 315

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEG 243
           L FPLG++ K   R  A   GL  A K +SQD+C          + D           EG
Sbjct: 316 LVFPLGELTKPDTRLEAERFGLRTAKKPESQDLCLADHHGSMRAFLDTYLPPR-----EG 370

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV L+G ++G+H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V  R      R 
Sbjct: 371 EIVLLDGTVVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRAEAGTDRC 430

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGV-------YVDF 352
            +  +NW+   +   A    ++  V++R    PV  +++     + D          + F
Sbjct: 431 VVGAVNWV--SMAPPAQGARYRVEVQVRYRSQPVGAWLEVVPATDADAAGGRPHRCQLQF 488

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           ++ +  +  GQA VFY  +    RVLGGG+I 
Sbjct: 489 DEPQFSITPGQAAVFYDGE----RVLGGGLIQ 516


>gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13]
          Length = 371

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKAPKDTRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY +       DG+ +  M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LDLGADYLATGHYAQVEF---RDGEYK--MLRGLDENKDQTYFLNQLGQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQ 251
           +++K  VR++A+  GL  A K DS  ICF+ +  +    K   +G   A  G+++ ++G+
Sbjct: 173 NIEKSEVREIAKRAGLATATKKDSTGICFIGERNF----KEFLSGYLPAQPGNMLTMDGE 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           + G+H+G++ YTIGQR GLG+   G+P FV+  D   + + VG     E L    I   +
Sbjct: 229 VKGKHDGLMYYTIGQRHGLGIGGSGDPWFVIGKDLEKNVLYVGQSFHNELLYSDSITATD 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           I+W+ +    +   DG  C  K R  Q    V +Q   D+ V V F++    +  GQA V
Sbjct: 289 ISWVSN----NPPADGTVCTAKFRYRQADNKVTIQHLEDNKVKVIFDEPVRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGGG I
Sbjct: 345 FYNGD----ECLGGGTI 357


>gi|257413240|ref|ZP_04742446.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis L1-82]
 gi|257204162|gb|EEV02447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis L1-82]
 gi|291539633|emb|CBL12744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis XB6B4]
          Length = 363

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 203/374 (54%), Gaps = 16/374 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQ 71
           ++K     +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC   
Sbjct: 1   MEKRMAAKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLS 60

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V DARRV D + + +YV ++++ F+  V+  F + Y  G TP PC+ CNR VK+  LL+
Sbjct: 61  AVDDARRVADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLN 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +  +GAD +ATGHY R    +      R  +   +   +DQ+Y L+  TQ+QL     P
Sbjct: 121 RSLAIGADYIATGHYAR----IEQLSNGRYAIKNSVTAVKDQTYALYNLTQEQLSHTLMP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNG 250
           +G   K+ +R +A E+GL +A K DSQ+ICF+    Y   + R     +   G+ V  +G
Sbjct: 177 VGAYHKDEIRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDG 236

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ++G+H GI +YTIGQR+GLG+A G P+FV  +   ++ V++G    +  + +    IN+
Sbjct: 237 TVVGKHKGITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINF 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +     +D ++       KIR S       V R  +D ++ +F +    V  GQA V Y 
Sbjct: 297 MSIPDIQDEML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYD 352

Query: 370 SDSNEARVLGGGII 383
            +     V GGG I
Sbjct: 353 GE----YVAGGGTI 362


>gi|189219049|ref|YP_001939690.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Methylacidiphilum infernorum V4]
 gi|189185907|gb|ACD83092.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Methylacidiphilum infernorum V4]
          Length = 367

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 197/367 (53%), Gaps = 16/367 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ R+VV MSGGVDS+V A LLKR+G+DV+G+TL+++  R        CC    + DAR 
Sbjct: 10  KNTRIVVGMSGGVDSTVAAYLLKREGFDVVGITLKIWTDRCMHISSEKCCGPDAINDARN 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   I + HYV D  + F   VI  F   Y+ G TP PCV CN  +KF  L +  +  G 
Sbjct: 70  MAAQIGIPHYVLDEADCFEKEVISYFLREYSLGRTPNPCVKCNEKIKFGRLWTRVQSWGV 129

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LATGHY    L    D   R  + +  D  RDQSYFLF+ +  QL  +  PLG+++K+
Sbjct: 130 EYLATGHYA---LVENQDHIPR--LKKAKDKRRDQSYFLFSLSAGQLSRMITPLGNLEKK 184

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHN 257
            VR +A+E GL++ +K +S+DICFV    Y + ++ +        G I+   G+++G H 
Sbjct: 185 EVRAIAKEAGLNVWNKEESRDICFVPGKNYKEFIQGKKTPSNTHSGFIIDEEGKVIGEHQ 244

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YT+GQR+GL    G PL+VV +D  S  +  G  +SL     Y  + +W+     E
Sbjct: 245 GIEGYTVGQRKGLPGGQGRPLYVVDIDPESKTIRAGSLKSLFKTHCYASQAHWI-----E 299

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +       VK+R +   V   +     D   +DF   ++G++ GQA V Y  D     
Sbjct: 300 KDIESPRPVTVKLRYNYPEVEALLTLLGKDRFRLDFSSPQMGISPGQAAVCYDGDI---- 355

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 356 VLGGGWI 362


>gi|303229103|ref|ZP_07315905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516227|gb|EFL58167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 353

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H++ D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHIIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +   Y  D G     + + +D  +DQSY ++   Q+ L  + FPLG   K   R 
Sbjct: 120 TGHYAQVN-YNEDTGLYE--LHKGVDPTKDQSYVMYNMNQRILSHIMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G+ILG+H G+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  +   + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V F++ +  +  GQ+  FY    N  ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFY----NGTQLLGGA 347

Query: 382 II 383
           +I
Sbjct: 348 VI 349


>gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 211/371 (56%), Gaps = 24/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+++VVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    S   G C A +D  D  R
Sbjct: 6   KNIKVVVGMSGGVDSSVSALLLKEQGYDVVGIFMKNWDEEDDS---GYCTAAEDYEDVVR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD I + +Y  ++ + + + V   F   Y +G TP P V CN+ +KF   L  + ++GA
Sbjct: 63  VCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFSLKIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       +GK R  M + +D  +DQ+YFL    Q+QL    FP+G + K 
Sbjct: 123 DYIATGHYARIEY---SNGKYR--MLKGVDKNKDQTYFLCELGQKQLSKTIFPIGHLNKF 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++AR+ GL  ADK DS  ICF+ + K+ + + +     A  G+I  L+G++LG+H+G
Sbjct: 178 EVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVLGKHDG 235

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLG 312
           ++ YT+GQRR     G+  GEP FVV  D  ++ + V   E   +L  + ++ +++NW+ 
Sbjct: 236 LMFYTLGQRRGLGIGGIGTGEPWFVVDKDVENNILYVAQGEKNPALYSYALFTKDVNWID 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + +      D F+C  K R  Q    V V   DDG +V F+K +  V  GQ  VFY  + 
Sbjct: 296 NSI----EADTFRCKAKFRYRQPDQDVTVYAKDDGYFVVFDKPQRAVTPGQFVVFYDGEY 351

Query: 373 NEARVLGGGII 383
                LGGG+I
Sbjct: 352 ----CLGGGVI 358


>gi|328955218|ref|YP_004372551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coriobacterium glomerans PW2]
 gi|328455542|gb|AEB06736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coriobacterium glomerans PW2]
          Length = 380

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 199/378 (52%), Gaps = 20/378 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSV A LL   GY  IG T+ LY+     +  +G C    DV DAR VC 
Sbjct: 7   VLVAMSGGVDSSVAAHLLLERGYTCIGATMSLYDETTMGRDPEGICGCADDVADARAVCA 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H VFD+++ F   VI  F   Y +G TP PC DCNR +KF  LL    ++G D +
Sbjct: 67  RLGIEHRVFDFKDLFERRVIDRFVEQYLSGRTPNPCADCNRALKFGALLDRALEIGCDFI 126

Query: 142 ATGHYIRSRLYVGDD-----GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
           ATGHY  +R+   +D     G+  R++    D+ +DQSY L++  Q++L  +  PLG++ 
Sbjct: 127 ATGHY--ARIETREDSEEGTGEGARLLRCATDISKDQSYMLYSLGQERLRRVLLPLGELI 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K   VR +ARE G   A K DSQ ICF+    + D ++R        GDI+   G +LGR
Sbjct: 185 KSRDVRRIAREQGFPNARKKDSQGICFIADRDFADFIERRVGAALPAGDILDGTGAVLGR 244

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDG 314
           H G I YTIGQR+GLGVA G PLFV  LD   + V +G +  L    +      W +   
Sbjct: 245 HRGAIRYTIGQRKGLGVAAGHPLFVTALDARCNTVTLGEQRELRADALIAEGWIWTMPAE 304

Query: 315 LFEDAVV----DGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFY 368
             E  +      G     + R  Q      + R   DD + + F++++  +A GQA V Y
Sbjct: 305 EMEHRLAREREQGLHVLARTRYHQRAQAARMSRLGRDDLMRIVFDEAQYAIAPGQAVVVY 364

Query: 369 TSDSNEARVLGGGIISGS 386
             D     VLGGG +  +
Sbjct: 365 DDDI----VLGGGTVRST 378


>gi|313902383|ref|ZP_07835786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467314|gb|EFR62825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 404

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 201/368 (54%), Gaps = 16/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           RV+ AMSGGVDSSV+AALL+  GY+VIGVT+Q + + +     R G CC+   V DARRV
Sbjct: 8   RVLAAMSGGVDSSVMAALLRDQGYEVIGVTMQTWPAMEPEDEARYGGCCSLSAVDDARRV 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV +  + F   VI  F + Y  G TP PC+ CNR +KF + L     LG D
Sbjct: 68  AERLGIPYYVMNMRQDFEEKVIDYFVAEYLQGRTPNPCIACNRYIKFDEFLRRAEALGCD 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D+   R I+ +  D  +DQ+Y L+  TQ+QL     P+G  +K  
Sbjct: 128 YVATGHYA---IVEYDEALGRFILRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFEKSQ 184

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA   GL  A K +SQ+ICFV+   +   ++         G I    G+ +G H G+
Sbjct: 185 VRQLAEAYGLVTARKPESQEICFVKDNDHRRFLEERAGDRIRPGPIYDTRGRRVGTHRGL 244

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318
             YT+GQRRGLG+    P++VV +    + +IVGP  +     +   E+NW+   GL  +
Sbjct: 245 AYYTVGQRRGLGIQSDRPMYVVRILPEKNALIVGPDTATYARGLRAVEVNWVSWPGLAGE 304

Query: 319 AVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           A V      V+ +S + P  V   V R  D V V FE+ +  +  GQA VFY  D    R
Sbjct: 305 ARV---TARVRYKSPEAPAVVRPLVGRQ-DAVEVWFEEPQRAITPGQAVVFYDGD----R 356

Query: 377 VLGGGIIS 384
           V GGG+I+
Sbjct: 357 VAGGGVIA 364


>gi|41409155|ref|NP_961991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81571098|sp|Q73VF7|MNMA_MYCPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41397975|gb|AAS05605.1| hypothetical protein MAP_3057c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 358

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 204/375 (54%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDEFLSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
            +R+ A   GL +A+K DS DICF+  G     + +RI       G +V  +G +L  H+
Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVDADGTVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +   
Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEASDLDVREMLGRAVVFTSG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A    F+C V++R+  +      +   D + V       GVA GQ    Y  D +
Sbjct: 288 ----TAPSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPD 343

Query: 374 EARVLGGGIISGSKR 388
              VLG   I+G+ R
Sbjct: 344 GDEVLGSATIAGTSR 358


>gi|312891399|ref|ZP_07750916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296093|gb|EFQ73245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
          Length = 362

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++   Y S   + ++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGTNTKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D    F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RALAVGYGFPHYILDIRSEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R +  D+G  R ++ + +D  +DQSY L+  +Q+ L   RFPLG   
Sbjct: 123 DCEFIATGHYANIRQH--DNG--RYVISKGLDQNKDQSYVLWGVSQRNLARTRFPLGSFA 178

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKY--------FDVVKRINAGIALEGDIVH 247
           K  +R +A++MG L++A+KS+S +ICFV    Y         D+ +R++      G+ V 
Sbjct: 179 KAEIRQMAKDMGQLELANKSESYEICFVPDNDYRSFLRHKVGDLEERVSG-----GNYVL 233

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G ++G+H G   YTIGQR+GLG+A+G+P+FV  +   S+ V++G  E LE    ++R 
Sbjct: 234 TDGTVVGKHQGYPFYTIGQRKGLGIALGQPMFVTQILPESNTVVLGTAEDLERREAWVRN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +N +      + + +  +   KIR     +   + +  + + VDF  S  G+A GQ+ VF
Sbjct: 294 LNLIK----YETITEPIEATTKIRYKDAGMLSNIVQIGEHMKVDFHHSVSGIAPGQSAVF 349

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     +LGGG +
Sbjct: 350 YEGDD----LLGGGFL 361


>gi|242373921|ref|ZP_04819495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348475|gb|EES40077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W1]
          Length = 372

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 209/370 (56%), Gaps = 20/370 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   EDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++EE + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  +DG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++K 
Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + + +     A  GD+V L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314
           ++ YTIGQR GLG+   G+P FVV   LD N   V  G   ++L    +   + +++ +G
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNVLYVEQGFHHDALYSDYLVASDYSFVNEG 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             E  +  GF+C  K R  Q    VFVQR N++ + V F++    +  GQA VFY    N
Sbjct: 295 --EINLEQGFECTAKFRYRQKDTKVFVQRENENSIRVTFDQPVRAITPGQAVVFY----N 348

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 349 GEVCLGGATI 358


>gi|111023428|ref|YP_706400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus jostii RHA1]
 gi|122955129|sp|Q0S2J4|MNMA_RHOSR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110822958|gb|ABG98242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus jostii RHA1]
          Length = 364

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/374 (39%), Positives = 207/374 (55%), Gaps = 25/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F +SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  ++L  G       ++ R +D ++DQSY L   T +QL    FP+GD  K+
Sbjct: 120 DAVATGHY--AQLENG-------VLRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256
            +R+ A E GL +A+K DS DICF+  G   D    + A I +  G +V  + G++L  H
Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSG---DTRAFLGARIGVRPGSVVDADSGEVLAEH 227

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G+  +TIGQR+GLGV    A G+P +V  ++ ++  V VG   +LEV  I      W  
Sbjct: 228 EGVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPDTGTVRVGSARNLEVDAITADRAVWTS 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   V   +C V++R+         +  D G+ +   +   GVA GQA V Y +D 
Sbjct: 288 G----STPVGPVECTVQVRAHGGLAEAVAEAVDGGIAISLREPLTGVAKGQAVVLYRTDP 343

Query: 373 NEARVLGGGIISGS 386
               VLG G ISG+
Sbjct: 344 AGDIVLGSGTISGT 357


>gi|319949296|ref|ZP_08023374.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4]
 gi|319437034|gb|EFV92076.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4]
          Length = 366

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 197/370 (53%), Gaps = 23/370 (6%)

Query: 31  VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88
           +DS+V AA     G++V+GV L L +S  A+ R GS  CC+ +D  DARRV D + +  Y
Sbjct: 1   MDSAVAAARAVAAGHEVVGVHLAL-SSDPATLRTGSRGCCSREDAGDARRVADLLGIPFY 59

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148
           V+D+ ERFR  VI  F  SYA GETP PC+ CN  +KF  LL     LG D +ATGHY R
Sbjct: 60  VWDFAERFRADVIDDFVESYARGETPNPCLRCNERIKFEALLERGMALGFDAVATGHYAR 119

Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                  DG RR ++ R +D  +DQSY L   T +QL    FPLGD  K  VR  A   G
Sbjct: 120 LSTEELPDGSRRPVLRRAVDAAKDQSYVLGVLTPEQLAHSMFPLGDSLKSQVRAEAEAAG 179

Query: 209 LDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           L +A K DS DICF+  G    +      +  G  ++ D     G  LGRH+GI  +TIG
Sbjct: 180 LPVATKPDSHDICFIPSGDTRAFLGARIGVRPGAVVDAD----TGDELGRHDGIHGFTIG 235

Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GLGV    A G P +V  +D +S  V VG  + L    +      WL D    +   
Sbjct: 236 QRKGLGVQGPAADGRPRYVTAIDADSGTVTVGGADHLLSVAMTATSPYWLVDDDIRET-- 293

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
               C V+IR+  +  P  V+R  DG    + +  ++   GVA GQA V Y S+ +  RV
Sbjct: 294 ---DCHVQIRAHGEATPAHVRRIGDGADATLEITLDEPVRGVAPGQAAVLYRSEPDGDRV 350

Query: 378 LGGGIISGSK 387
           LG G IS S+
Sbjct: 351 LGSGTISASR 360


>gi|27468222|ref|NP_764859.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867112|ref|YP_188761.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis
           RP62A]
 gi|282875953|ref|ZP_06284820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis SK135]
 gi|293366421|ref|ZP_06613099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30173406|sp|Q8CSA5|MNMA_STAES RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71153357|sp|Q5HNS9|MNMA_STAEQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27315768|gb|AAO04903.1|AE016748_137 (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637770|gb|AAW54558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis RP62A]
 gi|281294978|gb|EFA87505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis SK135]
 gi|291319455|gb|EFE59823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735247|gb|EGG71539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU045]
 gi|329737370|gb|EGG73624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU028]
          Length = 372

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 205/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++EE++ + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  DDG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++K 
Sbjct: 121 DYVATGHYARIRRH--DDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + +       A  G+++ LNG+ +G+H+G
Sbjct: 177 EVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSHYLP--AQSGEMLTLNGKKMGQHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV  + N + + V              E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYV--------------EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    V+VQR N++ + V F +    +  
Sbjct: 281 DYLIASDYSFVNPSEIDLEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY    N+   LGG  I
Sbjct: 341 GQAVVFY----NQEVCLGGATI 358


>gi|28210754|ref|NP_781698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium tetani E88]
 gi|75542643|sp|Q896F5|MNMA1_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|28203192|gb|AAO35635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium tetani E88]
          Length = 362

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 210/373 (56%), Gaps = 32/373 (8%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVY-DARRVCDT 82
            MSGGVDSSV A LLK  GYDVIG+T++++  N    SK K      +D+   A+ VCD 
Sbjct: 12  GMSGGVDSSVTAYLLKEQGYDVIGMTMKVFPGNYHDGSKEKI-----EDIMKSAKEVCDF 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D  E F   V  PF   Y  G TP PCV CN+ +KF   L+   +LGAD +A
Sbjct: 67  LEIPFVEVDLIEEFNKKVATPFMQDYIEGRTPNPCVYCNKHIKFDAFLNKAIELGADYIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      +  DG  R ++ R  D  +DQ+Y L+   Q QL  +  P GD  KE +R+
Sbjct: 127 TGHYAN---IIEKDG--RTLIYRAEDENKDQTYMLYNLKQHQLKHILMPCGDYNKEQIRE 181

Query: 203 LAREMGLDIADKSDSQDICFV---QQGKYF--DVVKRINAGIALEGDIVHLNGQILGRHN 257
           +A+++GL I +K DS++ICF+     G+Y   +  K+I      EG+ V   G++LGRH 
Sbjct: 182 IAKKIGLKIHNKKDSEEICFIPDDDHGRYIRENCKKKIQ-----EGNFVDEKGKVLGRHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GIINYTIGQR+GLG+A+G+P +V+ +    ++V++G  E +  + +  +++N++      
Sbjct: 237 GIINYTIGQRKGLGIALGKPAYVIDIIPEKNQVVLGEEEKIFNNILIAKDVNFIPF---- 292

Query: 318 DAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D + +  K   KIR S++  +       ++ V V F+K +  +  GQ+ VFY     E  
Sbjct: 293 DELKEKIKLEAKIRYSAKGEIAEIEPLENNRVKVTFDKKQRAITKGQSVVFYI----ENL 348

Query: 377 VLGGGIISGSKRS 389
           +LGGGII   + S
Sbjct: 349 LLGGGIIESVESS 361


>gi|300858284|ref|YP_003783267.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685738|gb|ADK28660.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206004|gb|ADL10346.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis C231]
 gi|302330557|gb|ADL20751.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276239|gb|ADO26138.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis I19]
          Length = 372

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 208/377 (55%), Gaps = 19/377 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G++V+GV L L    +  +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F SSY AGETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY + ++   G DG  RR     +D E+DQSY L   +++++    FP+GD  K 
Sbjct: 121 AVVTGHYAQLTQPEDGGDGYLRRA----IDPEKDQSYVLGVLSEKEIAHCMFPVGDTVKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   G  +A K DS DICF+  G     + R + G+   G IV   G+ L  H+G
Sbjct: 177 KIREEAAAQGFSVAKKPDSYDICFIPDGNTQAFLGR-HIGLR-PGMIVDTEGRALKEHDG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G+P +V  +D  +  V VG R+ L V +IY   + +L   
Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTDIDAATGTVTVGSRDDLSVSQIYADRLKYLHPA 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           L  D     F   V++R+    VP  V V  ++D + +   K   GVA GQA V Y  D+
Sbjct: 295 LSGD-----FSAEVQVRAHGSVVPCHVSVDSHNDTMTITLHKPLSGVARGQAAVIYLPDA 349

Query: 373 NEARVLGGGIISGSKRS 389
               VLG G I  +++S
Sbjct: 350 GGDIVLGSGTIYSTQKS 366


>gi|255036423|ref|YP_003087044.1| tRNA-specific 2-thiouridylase MnmA [Dyadobacter fermentans DSM
           18053]
 gi|254949179|gb|ACT93879.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dyadobacter fermentans DSM 18053]
          Length = 368

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 30/384 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGG+DSS+ A LL   GY+VIG+T++   Y S   +K++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   HY+ D    F + VI  F   Y  G TP PCV CN  +K+  LL    +L
Sbjct: 63  RNIAVELGFPHYILDIRAEFGDYVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADRL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   +   G     R  + + +D  +DQSY L+  +Q+ L   + PLG + 
Sbjct: 123 DCEFIATGHYANMQFNNG-----RHYVSKGIDAWKDQSYVLWGVSQESLARTKLPLGYLH 177

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++ARE G +D+ +KS+S +ICFV    Y   +KR   G+  E   G+ V+ +G I
Sbjct: 178 KAEIREMARERGFIDLVNKSESYEICFVPDNDYRGFLKRRIPGLEAEVAGGNFVYADGTI 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-----RESLEVHRIYLRE 307
           +G+H G   YT+GQR+GLG+A+G P+FV  + K+++ V++G      R+ + V ++ L++
Sbjct: 238 VGKHEGYPFYTVGQRKGLGIALGRPVFVTEIRKDTNEVVLGDMPDLFRDGMNVSKLNLQK 297

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
                      ++    +   K+R   D  P  + Q   D +   F     G+A GQA V
Sbjct: 298 YA---------SIEKPLETITKVRYKHDGTPALIEQTGPDQIVARFHDGVNGIAPGQAAV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  D     V+GGG I  S R +
Sbjct: 349 FYEGDD----VVGGGWIMKSFRQE 368


>gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61]
 gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC52]
 gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC61]
 gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC52]
          Length = 371

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 201/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYIATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  V V V    D GV V F+     V  GQA VFY
Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDVGVTVHPLADGGVEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
               N    LGGG I
Sbjct: 347 ----NGEECLGGGTI 357


>gi|317122065|ref|YP_004102068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592045|gb|ADU51341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter marianensis DSM 12885]
          Length = 405

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 14/367 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           RV+ AMSGGVDSSV+AALL+ +GY+VIGVT+Q + +  A    R G CC+   + DARRV
Sbjct: 8   RVLAAMSGGVDSSVMAALLRDEGYEVIGVTMQTWPAMAAEDEARYGGCCSLSAIDDARRV 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +YV +  + F   VI  F   Y  G TP PC+ CNR +KF + L   + LG D
Sbjct: 68  AERLGIPYYVMNMRQDFEEKVIDYFVEEYLRGRTPNPCIACNRYIKFDEFLRRAQALGCD 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   DD   R ++ +  D  +DQ+Y L+  TQ+QL     P+G  +K  
Sbjct: 128 YVATGHYA---IVEYDDAAGRFVLRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFEKSE 184

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA   GL  A K +SQ+ICFV+   +   ++         G I  + G+ +G H G+
Sbjct: 185 VRRLAEAYGLVTARKPESQEICFVKDDDHHRFLEERAGDRIQPGPIYDIRGRRIGTHRGL 244

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318
             YT+GQRRGLG+    P++VV +    + +IVGP  +     +   ++NW+   GL  +
Sbjct: 245 AYYTVGQRRGLGIQSDRPMYVVRILPEQNALIVGPDTATYARGLRAVDVNWVSWPGLAGE 304

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A V      V+ +S +    V  V   DD V V F++ +  +  GQA VFY  D    RV
Sbjct: 305 ARV---TAKVRYKSPEAAAVVRPVAGRDDAVEVWFDEPQRAITPGQAVVFYDGD----RV 357

Query: 378 LGGGIIS 384
            GGG+I+
Sbjct: 358 AGGGVIA 364


>gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911]
 gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911]
          Length = 370

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 207/375 (55%), Gaps = 24/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKSPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY  +R+  G++G +   M R +D  +DQ+YFL   T++QL  + FP+G
Sbjct: 118 MSLGADYLATGHY--ARVEHGENGVK---MLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A++ GL  A K DS  ICF+ +  + + +   N   A  G +  + G+ +
Sbjct: 173 SIEKSEVREIAKKAGLATAAKKDSTGICFIGERNFKEFLG--NYLPAQPGSMETMEGETV 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   G+P FV+  D   + + VG     E L    I   +++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGAGDPWFVIGKDLKRNVLYVGQGFDNEKLYSDSIIADKVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+       A  + F+C  K R  Q    V V   ++G   + F      V  GQA VFY
Sbjct: 291 WV-----SKAPGETFECTAKFRYRQPDNSVTVTLLENGQAKITFHSPIRAVTPGQAVVFY 345

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 346 DGEV----CLGGGTI 356


>gi|314972469|gb|EFT16566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL037PA3]
          Length = 360

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 206/375 (54%), Gaps = 25/375 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGG+DS+V AA L   G+DV GV L L  + + S R+GS  CC+ +D + ARR  D + 
Sbjct: 1   MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFAARRAADRLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY ++++    DG  +  + R +D  +DQSY L    Q QL    FPLG+  K  VR  A
Sbjct: 120 HYAQAKVI---DGVTK--LYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263
             +GL +ADK DS DICF+  G   D    ++  I + +G+I   +G ++GRHNG   +T
Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGRHNGYHRFT 231

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL + +    G+P +V+ ++  ++ V+VG  E L V+ I      W         
Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWC-----SGE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
             D +   V++R+  DPVP  +     GV V+ E    GVA GQA VFY  D     V+G
Sbjct: 287 PADTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVG 342

Query: 380 GGIISGSKRSDAVEE 394
              I G+ R+    E
Sbjct: 343 SATICGTDRAGTTAE 357


>gi|123966685|ref|YP_001011766.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9515]
 gi|205816903|sp|A2BXZ8|MNMA_PROM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123201051|gb|ABM72659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 390

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 214/385 (55%), Gaps = 32/385 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K+ K   +VV +SGGVDSS+ AALL  DG+ V G+TL L       K +GSCC+ + + 
Sbjct: 18  NKSKKQKHIVVGLSGGVDSSLSAALLMEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA  +C+ + + H + D    F   VI      Y +G TPLPC  CN+ VKF ++L  V 
Sbjct: 71  DAAGLCEDLGIQHNILDSRVIFEREVIKKTTEGYESGYTPLPCSMCNKNVKFEEMLKFVI 130

Query: 134 RQLGADVLATGHYIR----SRLYVGDDGK---RRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +Q     +ATGHY R    S  ++ +      +  ++ R  D  +DQSYFL++ +Q+ L 
Sbjct: 131 KQKEFTYIATGHYARVIKSSCEHINNSENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDI 245
            L  PLGD+KKE  R  A  +GL  A K +SQD+C V+   Y  + K I+  +  + G+I
Sbjct: 191 RLILPLGDLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHVKTKNGEI 248

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            H+NG+ LG HNGI ++TIGQR+GLG+A  EPL+V  LDK  + V V  +  L      +
Sbjct: 249 KHINGKTLGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKNDLLKREAII 308

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY-VDFEKSEVGV 359
           +E+NW+      +A +   +   +IR   +P     VP+  + N    + + FE ++  V
Sbjct: 309 KEVNWVSI----EAPIKEIEVEAQIRYRSEPVKGILVPLKSKDNLTKRFKLIFEDNQSSV 364

Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384
             GQA VFY  +     +LGGG+IS
Sbjct: 365 TPGQAAVFYKGEI----LLGGGLIS 385


>gi|312622080|ref|YP_004023693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202547|gb|ADQ45874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 360

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG D
Sbjct: 64  AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+    
Sbjct: 181 VRKLAEKFNLPVARKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++      D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFIPF----DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     +   ++ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKIRYTAKEAKAKVIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
 gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
          Length = 371

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 208/378 (55%), Gaps = 29/378 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  + R +D ++DQ+YFL    Q+QL  + FPLG
Sbjct: 118 LSIGADYVATGHYARIEY---RDGEYK--LLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
            ++K  VR +A++ GL  A K DS  ICF+ +    D  K +++ +  +  I+  L+G++
Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGER---DFKKFLSSYLPAQPGIMQTLDGEV 229

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306
            G+H+G++ YTIGQR GLG+   GEP FVV   KN    I+   +      +Y       
Sbjct: 230 KGKHDGVMYYTIGQRHGLGIGGNGEPWFVV--GKNVKENILYVAQGFNNEYLYSTSLIAT 287

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
            +NW+ D          F+C  K R  Q  + V V   +DD V V F++    V  GQA 
Sbjct: 288 NVNWVSD----RKPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVVFDEPVRAVTPGQAV 343

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY    N    LGGG I
Sbjct: 344 VFY----NGEECLGGGTI 357


>gi|303232130|ref|ZP_07318833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513236|gb|EFL55275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 353

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 199/362 (54%), Gaps = 18/362 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +   Y  D G     + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 120 TGHYAQVN-YNEDTGLYE--LHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G+ILG+H G+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  +   + VIVGP + L  +R+     N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNDRLFTNRMICNFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V F++ +  +  GQ+  FY    N  ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFY----NGTQLLGGA 347

Query: 382 II 383
           +I
Sbjct: 348 VI 349


>gi|295399328|ref|ZP_06809310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978794|gb|EFG54390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 371

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 208/378 (55%), Gaps = 29/378 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  + R +D ++DQ+YFL    Q+QL  + FPLG
Sbjct: 118 LSIGADYVATGHYARIEY---RDGEYK--LLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
            ++K  VR +A++ GL  A K DS  ICF+ +    D  K +++ +  +  I+  L+G++
Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGER---DFKKFLSSYLPAQPGIMQTLDGEV 229

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306
            G+H+G++ YTIGQR GLG+   GEP FVV   KN    I+   +      +Y       
Sbjct: 230 KGKHDGVMYYTIGQRHGLGIGGNGEPWFVV--GKNVKENILYVAQGFNNEYLYSTSLIAT 287

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
            +NW+ D          F+C  K R  Q  + V V   +DD V V F++    V  GQA 
Sbjct: 288 NVNWVSD----RKPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVIFDEPVRAVTPGQAV 343

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY    N    LGGG I
Sbjct: 344 VFY----NGEECLGGGTI 357


>gi|67922387|ref|ZP_00515898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Crocosphaera watsonii WH 8501]
 gi|67855731|gb|EAM50979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Crocosphaera watsonii WH 8501]
          Length = 349

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 203/367 (55%), Gaps = 27/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L+  GYDVIG+TL L       K KG CC+ + + DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAASLQHQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + ++H++ D  + F   +I    S Y +G TPLPC  CNR VKF  +L+  + +L  D 
Sbjct: 56  QLGIAHHIVDTRDLFTENIIDYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAQAELNCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D   +R  + R +D  +DQSYFL+  +Q  L    FPLG+  KE  
Sbjct: 116 IATGHYARIDY---DKITQRYQLLRAVDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           R +A E  L  A K +SQD+C ++       + D   +       EG+IV L G++LG H
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMSTFLDQYIKPK-----EGEIVDLEGKVLGTH 227

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+ +YTIGQRRGLG+A  EPL+VV LD   +RVIVG R         +  +NW+   + 
Sbjct: 228 QGVHHYTIGQRRGLGIAAPEPLYVVKLDAVMNRVIVGNRADGGRSDCTVGRLNWV--SIP 285

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E A     +  V+ RS    V + +   D  V + F + + G+  GQA VFY  +     
Sbjct: 286 EPASPITAEVQVRYRSKAVRVTI-IPLEDHRVKLQFNEPQFGITPGQAAVFYDGEI---- 340

Query: 377 VLGGGII 383
           VLGGGII
Sbjct: 341 VLGGGII 347


>gi|223044127|ref|ZP_03614166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus capitis SK14]
 gi|314933788|ref|ZP_07841153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus caprae C87]
 gi|222442521|gb|EEE48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus capitis SK14]
 gi|313653938|gb|EFS17695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus caprae C87]
          Length = 372

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 208/370 (56%), Gaps = 20/370 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++EE + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  +DG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++K 
Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + + +     A  GD+V L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314
           ++ YTIGQR GLG+   G+P FVV   LD N   V  G   ++L    +   + +++ + 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNLLYVEQGFHHDALYSDYLIASDFSFVNEN 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373
             E  +  GF+C  K R  Q    VFV++ D+  + V F++    +  GQA VFY    N
Sbjct: 295 --EIDLEHGFECTAKFRYRQKDTKVFVKKEDESSIRVTFDQPVRAITPGQAVVFY----N 348

Query: 374 EARVLGGGII 383
           E   LGG  I
Sbjct: 349 EEVCLGGATI 358


>gi|312793905|ref|YP_004026828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181045|gb|ADQ41215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 360

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG D
Sbjct: 64  AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V  +G ILG+    
Sbjct: 181 VRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEK-ETGIKDEGIYVDTDGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++V++G    +    +   ++N++      D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEGKIFSDGLIAYDLNFIPF----DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     +   ++ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKIRYTAKEAKARIIPAQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|226305865|ref|YP_002765825.1| tRNA uridine-sulfurtransferase [Rhodococcus erythropolis PR4]
 gi|229493398|ref|ZP_04387187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus erythropolis SK121]
 gi|259495836|sp|C0ZXK1|MNMA_RHOE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226184982|dbj|BAH33086.1| probable tRNA uridine-sulfurtransferase [Rhodococcus erythropolis
           PR4]
 gi|229319714|gb|EEN85546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus erythropolis SK121]
          Length = 370

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 210/381 (55%), Gaps = 31/381 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-STAPGALRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F +SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFTALADRAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      +DG    ++ R +D ++DQSY L   T  QL    FP+GD  KE
Sbjct: 120 DAVATGHYARL-----EDG----VLRRAVDADKDQSYVLGVLTADQLSRAMFPIGDTPKE 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256
            +R+ A E GL +A+K DS DICF+  G   D    + A I +  G +V  + G++L  H
Sbjct: 171 QIREEAAERGLAVANKPDSHDICFIPTG---DTRAFLGARIGVRPGSVVDADSGEVLAAH 227

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+  +TIGQR+GLGV      G P +V  ++  +  V VG  ++L+V  I  +   W  
Sbjct: 228 DGVHGFTIGQRKGLGVEGPAGDGRPRYVTAIEPETGTVRVGSAKNLDVWAISAQRAIWTS 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVF 367
               E  V    +C V++R+         +  DD     G+ +   +   GVA GQA V 
Sbjct: 288 GQAPEGPV----ECMVQVRAHGGLAQAVAEAVDDGTSGGGISISLREPLTGVAKGQAVVL 343

Query: 368 YTSDSNEA-RVLGGGIISGSK 387
           Y  DS    +VLG G ISG++
Sbjct: 344 YRPDSELGDQVLGSGTISGTE 364


>gi|306835899|ref|ZP_07468893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49726]
 gi|304568224|gb|EFM43795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49726]
          Length = 361

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 147/373 (39%), Positives = 200/373 (53%), Gaps = 26/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G+DV+GV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 1   MRVLVAMSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+  VI  F  SY+ GETP PC+ CN  +KF  LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      + DDG  R    R  D  +DQSY L   + ++L    FP+GD  K  
Sbjct: 121 AVATGHYAT----LDDDGYMR----RSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           +R+ A   G   A K DS DICF+  G   +  + + + I L  G IV   G  L  H+G
Sbjct: 173 IREEAAAHGFSTAKKPDSYDICFIPDG---NTQQFLGSRIGLRPGMIVDQEGTELKEHDG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G
Sbjct: 230 AWNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPG 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +  D     F+C V++R+    VP    V R  D + ++ ++   GVA GQA V Y    
Sbjct: 290 MDGD-----FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSP 344

Query: 373 NEAR--VLGGGII 383
           ++    V+G G I
Sbjct: 345 DDLGDIVIGSGTI 357


>gi|225851037|ref|YP_002731271.1| tRNA-specific 2-thiouridylase MnmA [Persephonella marina EX-H1]
 gi|254811456|sp|C0QRH5|MNMA_PERMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225646565|gb|ACO04751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Persephonella marina EX-H1]
          Length = 353

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 203/368 (55%), Gaps = 21/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV V MSGGVDSSV A LLK  GYDVIGVTL+L +S   S     CC+ QD+ DA+RV 
Sbjct: 1   MRVAVGMSGGVDSSVAALLLKEKGYDVIGVTLKL-SSIVCSNDIQVCCSPQDIKDAKRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
             + + HYV D+E+ FR  VI  F   Y  G+TP PC  CNR VK   L   V   LGAD
Sbjct: 60  SYLGIEHYVIDWEDIFREKVINYFVEEYKKGKTPNPCSVCNREVKTGRLAKFVNIVLGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHYI+    + D     +++ R  D+++DQSYF+    +  L  L FPL D+ KE 
Sbjct: 120 KFATGHYIK----IEDHPVYGKVIKRGSDIKKDQSYFMALLERDVLDLLIFPLSDLTKEE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258
           VR +A +  + ++ K +S +ICF   GK        N  +A E GDIVH++G+ +G+H G
Sbjct: 176 VRKIAEDYKIPVSQKKESFEICFTA-GKTPAEYLLENNLLAFESGDIVHIDGKTVGKHKG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT+GQRRGLGV   EPL+V+  D   + V+VG RE L    +   + N+L     E 
Sbjct: 235 LPFYTVGQRRGLGVRWREPLYVIEKDAERNTVVVGEREKLLTDHVSSEDFNFLVP--VEK 292

Query: 319 AVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              +G    V+ R  Q  V    V ++ N    Y  FEK E   A GQ    Y  D    
Sbjct: 293 WKKEGLS--VQGRYRQKAVKIKDVSIEGNRLTAY--FEKPEERFAKGQVLAVYDGDI--- 345

Query: 376 RVLGGGII 383
            +LGGGII
Sbjct: 346 -LLGGGII 352


>gi|289423552|ref|ZP_06425353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156054|gb|EFD04718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus anaerobius 653-L]
          Length = 350

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 212/370 (57%), Gaps = 32/370 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK++GYDV+GV ++L++              +DV DA  VC+
Sbjct: 5   KVLLGMSGGVDSSVAAYLLKKEGYDVVGVNMKLWDRPDE----------KDVEDAISVCE 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +V D ++ F+  VI  F   Y AG TP PCV CN+ +KF DL     +LG D +
Sbjct: 55  KLDIPFHVIDLQKEFKGKVIENFIKEYEAGHTPNPCVFCNKNIKFGDLFKKAEELGCDYI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY    L   ++ K    + +  +  +DQ+Y ++  +Q++L  + FP+G   K+ +R
Sbjct: 115 ATGHY---ALIEYNEEKGIYELKKASNSNKDQTYVMYNLSQEKLSKILFPIGKYNKDQIR 171

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-----RINAGIALEGDIVHLNGQILGRH 256
           ++A+E+GL + +K DSQDICF+    Y   +K     R+N GI ++ D     G  LG H
Sbjct: 172 EMAKEIGLKVYNKPDSQDICFIPDNNYERFLKEKTNIRVNEGIFVDKD-----GNKLGDH 226

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+  G+P +V+ ++   + +++G  E L    +  ++ N++    F
Sbjct: 227 KGIISYTIGQRKGLGMTFGKPTYVIDINAKDNTIVLGDNEDLFKTELVAKDANFIP---F 283

Query: 317 EDAVVDGFKCF-VKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           +   +DG + F  KIR S       V    D+ + V F++++  +  GQ+ VFY  D   
Sbjct: 284 DIETLDGTRKFDAKIRYSSSLSKASVTYLGDNRIRVVFDQAQRAITRGQSVVFYDGDC-- 341

Query: 375 ARVLGGGIIS 384
             ++GGGII 
Sbjct: 342 --LVGGGIIE 349


>gi|312877398|ref|ZP_07737363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795872|gb|EFR12236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 360

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 206/368 (55%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DARRV
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG D
Sbjct: 64  AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+    
Sbjct: 181 VRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEK-ETGIKDEGIYVDTEGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++      D 
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFIPF----DK 295

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   K+R ++++     +   ++ V V F + +  +  GQ+ VFY+ D     V+
Sbjct: 296 LESELEVTAKVRYTAKEAKARIIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|317472707|ref|ZP_07932022.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899884|gb|EFV21883.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 178/302 (58%), Gaps = 9/302 (2%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++   +       G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +L  G     R  + R    E+DQ+Y L+  TQ QL     P+G+  K+
Sbjct: 124 YIATGHYARIEKLSNG-----RYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A ++ L +A K DSQDICFV  G Y D ++         G+ V ++G ILG H G
Sbjct: 179 EIREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YT+GQRRGLG+++ +P +VV +DK  + V++G  E L    +Y   +N +     ED
Sbjct: 238 IVCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIED 297

Query: 319 AV 320
            +
Sbjct: 298 GM 299


>gi|88809139|ref|ZP_01124648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7805]
 gi|88787081|gb|EAR18239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7805]
          Length = 409

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 213/397 (53%), Gaps = 34/397 (8%)

Query: 3   VSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           V+ AT   +  LD+    P + RV V +SGGVDSS+ AALL   G+DV G+TL L +   
Sbjct: 27  VTAATIAGAEALDRLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWDVEGLTLWLMSG-- 84

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               KG+CCA + + DA  +C+ + + H+V D  E F+  ++      Y AG TPLPC  
Sbjct: 85  ----KGACCA-EGLVDAAGICEQLEIPHHVVDSRETFQREIVNGLIEGYQAGITPLPCSR 139

Query: 120 CNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           CNR VKFS +L   ++  G   +ATGHY R R    DD   R  + R +D  +DQSYFL+
Sbjct: 140 CNRAVKFSPMLRWAQEERGLARIATGHYARLRF---DDSSSRWRLLRGLDARKDQSYFLY 196

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
             TQ+ L  + FPLG++ K   R  A   GL  A K +SQD+C      +  +   ++A 
Sbjct: 197 DLTQEVLDRVVFPLGELTKPDTRLEAARHGLRTAAKPESQDLCLADH--HGSMRAFLDAY 254

Query: 239 IAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
           +   +G+IV  +G ++G H+GI ++TIGQR+GLG+A  EPL VV LD   +RV+V  R+ 
Sbjct: 255 LPPRQGEIVLQDGTVVGEHDGIEHFTIGQRKGLGIAWSEPLHVVRLDAAMNRVVVATRDQ 314

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-------- 349
                  +  INW+   +   A     K  V++R    PVP  +   D            
Sbjct: 315 AGRDHCVVGAINWV--SIAPPAPGQRQKVHVQVRYRSAPVPAQLTTMDAEASDAEAERPH 372

Query: 350 ---VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              +DF++ +  +  GQA VFY  D+    VLGGG+I
Sbjct: 373 RCRLDFDEPQFSITPGQAAVFYDGDA----VLGGGLI 405


>gi|118617523|ref|YP_905855.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium ulcerans Agy99]
 gi|166235069|sp|A0PPW5|MNMA_MYCUA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822174|sp|B2HIE6|MNMA_MYCMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118569633|gb|ABL04384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU
           [Mycobacterium ulcerans Agy99]
          Length = 363

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 200/379 (52%), Gaps = 24/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGALRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ ERF+  VI  F SSYA GETP PC+ CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           DV+ TGHY R       +G+ RR     +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DVVVTGHYARL-----SEGRLRRA----VDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
            +R+ A   GL +ADK DS DICF+  G     + +RI       G +V   G +L  H+
Sbjct: 171 QIREEASRRGLAVADKPDSHDICFIPSGNTQTFLGERIG---VRRGTVVDAAGAVLATHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G P +V  +D  +  V VG    L+VH +  R   +   
Sbjct: 228 GVHGFTIGQRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A     +C V++R+  +      +   D + V       GVA GQ  V Y  D +
Sbjct: 288 ----TAPTGPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPD 343

Query: 374 EARVLGGGIISGSKRSDAV 392
              VLG   I+ +     V
Sbjct: 344 GDEVLGSATITATSACSPV 362


>gi|284052528|ref|ZP_06382738.1| tRNA-specific 2-thiouridylase MnmA [Arthrospira platensis str.
           Paraca]
 gi|291571991|dbj|BAI94263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Arthrospira platensis NIES-39]
          Length = 359

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 207/372 (55%), Gaps = 30/372 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSS  AA+L   GY+V+G+TL L       + KG CC+ + + DA  +C+
Sbjct: 3   KIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCS-EGMVDAAHICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            + + HY+ D  + F+  +I      Y AG TPLPC  CNR VKF  +L   + +L  + 
Sbjct: 56  QLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNINR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       D   R  + R +D  +DQSYFL+  TQ  L  + FPLG++ K   
Sbjct: 116 IATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDILGAVVFPLGEVPKSET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A +  L  ADK +SQD+C V+  G     + +   G   +G+IV   G++LG H+GI
Sbjct: 173 RRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDPEGRVLGEHDGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLG++  EPL+V+ +D   +RV+VG R+ +      +R +NW+      + 
Sbjct: 231 HHYTIGQRRGLGISAPEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIAPPSEP 290

Query: 320 VVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +    +  V+IR    P+PV V         +    V + F++   G+  GQA V+Y+ D
Sbjct: 291 I----RAEVQIRYRSKPLPVTVVPLSSEPDPQIGTRVRLIFDEPIFGITPGQAAVWYSED 346

Query: 372 SNEARVLGGGII 383
                +LGGG+I
Sbjct: 347 ----LLLGGGVI 354


>gi|294508524|ref|YP_003572583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1
           [Salinibacter ruber M8]
 gi|294344853|emb|CBH25631.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 [Salinibacter ruber M8]
          Length = 383

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 203/374 (54%), Gaps = 21/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYD 75
           K  RV+VAMSGGVDSSV A LLK  GYDV+G+T++ ++   +  R G    CC+ + + D
Sbjct: 3   KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V       H+V D  E F + VI  F   Y +G TP PCV CN  +K+  LL     
Sbjct: 63  ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L  + +ATGHY   R    DD + R ++ R +D  +DQSY L+   Q+ L    FPLG  
Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251
           +K  +R++A E GLD +ADK DS +ICF+    Y   +K    G+  E   G  V  +G 
Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+G   YTIGQRRGL +A+GE ++V  +D  ++ + VGPRE L    +   EIN  
Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPREELMEQTLTAHEIN-- 297

Query: 312 GDGLFEDAVVDGFK-CFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369
              L +   +DG +  +  IR + D       Q ++D + V F + +  +  GQ+ V Y 
Sbjct: 298 ---LVKYPELDGERPAWGTIRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYE 354

Query: 370 SDSNEARVLGGGII 383
            D     VLGGG I
Sbjct: 355 DDD----VLGGGWI 364


>gi|51893527|ref|YP_076218.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
 gi|81388362|sp|Q67LS2|MNMA_SYMTH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51857216|dbj|BAD41374.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 390

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 204/393 (51%), Gaps = 31/393 (7%)

Query: 7   TRLNSLDLDKN----PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           TR  +L + K     P   RV++AMSGGVDSSV AALL   GY+VIGVT+  +      +
Sbjct: 10  TRRATLYVTKEGGGRPVAKRVLMAMSGGVDSSVAAALLVEQGYEVIGVTMNTWTDDIPEE 69

Query: 63  ----RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
               +   CC+   V DAR V   + + +YV +++ +F   VI  F   Y  G TP PC+
Sbjct: 70  IQMNQHSGCCSLAAVEDARSVAHKLGIPYYVMNFQGQFARTVIDYFIEEYTRGRTPNPCI 129

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK--RRRIMCRPMDLERDQSYF 176
            CNR VKFS  L   +QL  D +ATGHY      +G D +   R ++ +  D  +DQ+Y 
Sbjct: 130 ACNRYVKFSAFLEKAKQLECDYVATGHYA----VIGQDDRFPGRWLLGKSADARKDQTYV 185

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           L   TQ+ L    FP+G ++K  VR LA + G   ADK DSQ+ICFV    Y   +K   
Sbjct: 186 LHNLTQEALAHTLFPVGHLQKSEVRALAAKYGFVTADKPDSQEICFVYDNDYGRFLKERA 245

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
               + G I++  G+++G+H G+  YTIGQR+GLG+    P++VV LD   + VIVG  E
Sbjct: 246 PEAIVPGPILNTRGEVIGQHQGLPLYTIGQRKGLGLTTPRPVYVVDLDVERNAVIVGEDE 305

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGF----KCFVKIRSSQDPVPVFVQR-NDDGVYVD 351
                 +   ++NW+         + G     +C  KIR         +    +D V V+
Sbjct: 306 ETYRGGLVASDLNWI--------AIPGLTFPRRCRAKIRRMAPEAECTIYPIGEDAVRVE 357

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F++ +  +  GQA VFY  D     VLGGG I 
Sbjct: 358 FDRPQRAITPGQAVVFYDGDW----VLGGGTIE 386


>gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium QM B1551]
 gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium QM B1551]
          Length = 370

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 207/375 (55%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R       DG+ +  M R +D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MTLGADYLATGHYARVAY---RDGEYK--MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E GL  A K DS  ICF+ +  + + + +     A  G +  L+G++ 
Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV   L+KN   V  G   E L    +    ++
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +  +   +     C  K R  Q    V V++ +DD + V F +    +  GQA VFY
Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGG  I
Sbjct: 347 KDD----ECLGGATI 357


>gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. G11MC16]
 gi|166234855|sp|A4IR87|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. G11MC16]
          Length = 371

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYVATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  + V V    DG   V F+     V  GQA VFY
Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDIGVMVHPLADGKAEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 347 NGDE----CLGGGTI 357


>gi|149175981|ref|ZP_01854598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces maris DSM 8797]
 gi|148845135|gb|EDL59481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces maris DSM 8797]
          Length = 369

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 201/378 (53%), Gaps = 29/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---------------KRKGS 66
           RVV+AMSGGVDSS  A LL   GY+VIG+ ++   + + +                 K  
Sbjct: 4   RVVLAMSGGVDSSAAAHLLLEQGYEVIGLFMRSGATEETACAIEDKNSLPVLNLKAHKQG 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+  D  DARRV D +++  +  ++++ F   +   FA  Y AG TP PCV CN  +KF
Sbjct: 64  CCSASDAADARRVADMLDIPFHALNFKDAF-GRIKDYFADEYLAGRTPNPCVMCNNWLKF 122

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L     Q+GA  ++TGHY  ++L    D + +  + R +D  +DQSY LF   +  L 
Sbjct: 123 GKLWEFAEQVGASYISTGHY--AQLTSLPD-ETQPALIRGLDRSKDQSYVLFGINRGLLD 179

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            + FP+G   K  +R++A E GL  A+K DSQ+ICF+    YF  + R        G++V
Sbjct: 180 KIIFPVGGFVKPEIREMAGEAGLRTANKPDSQEICFIPDNDYFGFLNRYRGPQETAGEMV 239

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G ++G+H G  NYTIGQR+ LGVA G P FV+ ++  ++RV++G R+ L  + +   
Sbjct: 240 DTSGNVVGQHTGYENYTIGQRKRLGVAFGTPRFVIKIEPETNRVVIGTRDELARNSLEAN 299

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
             NWL D    +      +C  +IR         V+  ++D   V F+  E GVA GQA 
Sbjct: 300 RSNWLIDDPGSE-----IRCQAQIRYQHKEADCLVEILDEDRFRVTFDDPEYGVAPGQAV 354

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y  D    RVLGGG I
Sbjct: 355 VLYDED----RVLGGGWI 368


>gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
           HTA426]
 gi|81557817|sp|Q5KWT8|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 371

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 200/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYIATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  V V V    D G  V F+     V  GQA VFY
Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
               N    LGGG I
Sbjct: 347 ----NGEECLGGGTI 357


>gi|242242895|ref|ZP_04797340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis W23144]
 gi|242233670|gb|EES35982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis W23144]
          Length = 372

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++EE++ + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  +DG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++K 
Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDVEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + + +     A  G+++ LNG+ +G+H+G
Sbjct: 177 EVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV  + N + + V              E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNILYV--------------EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    V+VQR N++ + V F +    +  
Sbjct: 281 DYLIASDFSFVNPSEIDLEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY    N+   LGG  I
Sbjct: 341 GQAVVFY----NQEVCLGGATI 358


>gi|328554370|gb|AEB24862.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens
           TA208]
          Length = 371

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 203/375 (54%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R    V   G   R M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYAR----VDRSGDTVR-MLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W   GL +   +    C  K R  Q+   V V+    D   + F+K    V  GQA VFY
Sbjct: 291 WTRPGLMDGGEM---TCTAKFRYRQEDHKVTVKMTGADEAEIIFDKQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGE----ECLGGGTI 358


>gi|145224833|ref|YP_001135511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium gilvum PYR-GCK]
 gi|315445164|ref|YP_004078043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. Spyr1]
 gi|189040505|sp|A4TDZ4|MNMA_MYCGI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145217319|gb|ABP46723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium gilvum PYR-GCK]
 gi|315263467|gb|ADU00209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. Spyr1]
          Length = 357

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 150/373 (40%), Positives = 198/373 (53%), Gaps = 30/373 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVAAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  SYA GETP PCV CN  +KFS L S    LG 
Sbjct: 60  VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALASRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+ RR     +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DALATGHYARLA-----DGRLRRA----VDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R+ A  +GL +ADK+DS DICF+  G   D    + A I +  G++V   G +L  H+
Sbjct: 171 QIREEAARLGLAVADKADSHDICFIPSG---DTKAFLGARIGVRRGNVVDAAGTVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G P +V  +D  +  V VG    LEV        +  GD
Sbjct: 228 GVHGFTIGQRKGLGIPGPGPDGSPRYVTGIDAQTGTVHVGDVADLEV-------TSLQGD 280

Query: 314 G-LFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
             +F   V      +C V++R+         +   D + V       GVA GQ  V Y  
Sbjct: 281 APVFTSGVAPTGPLECVVQVRAHGGVADAVAELRGDTLEVSLRTPLRGVAPGQTLVLYRR 340

Query: 371 DSNEARVLGGGII 383
           D     VL    I
Sbjct: 341 DPAGDEVLASATI 353


>gi|170758983|ref|YP_001788227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|205810606|sp|B1KZJ2|MNMA2_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|169405972|gb|ACA54383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 353

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 205/363 (56%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GY+VIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYEVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  ++ +  + F+  VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHIINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++  RR+++ +  D ++DQ+Y ++   Q QL     P G+ +KE +R+
Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++     E ++  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFIPFDKLEKSM-- 293

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ V Y  D     ++GGG
Sbjct: 294 --ELEAKVRYSAKPSKATIIPLGNNKVKVVFQNKQRAITKGQSVVLYDKDM----LVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|326800569|ref|YP_004318388.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21]
 gi|326551333|gb|ADZ79718.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21]
          Length = 362

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++   Y S   S ++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGGSTKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D  + F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RALAVGYGFPHYILDIRDEFGDFVINNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   RL   D G  R ++ +  D  +DQSY L+  +Q+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRLQ--DSG--RYVISKGRDEHKDQSYVLWGVSQKNLARTKFPLGSFT 178

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKY--------FDVVKRINAGIALEGDIVH 247
           K  +R +A EMG +++A+KS+S +ICFV    Y         D+ +RI A     G+ + 
Sbjct: 179 KAEIRQMALEMGQVELANKSESYEICFVPDNDYRSFLRHRVEDIDERIGA-----GNFIL 233

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G ++G+H G   YTIGQR+GLG+A+G P+FV+ +   S+ V++G  E L+    Y+R 
Sbjct: 234 SDGTVVGKHAGYPYYTIGQRKGLGIALGRPVFVIQILPESNTVVLGSEEELQKDTAYVRN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           IN +      + + +  +   KIR         +   +  + VDFE    G+A GQ+ VF
Sbjct: 294 INLIK----YEHIPEPMEAVTKIRYKDAGAISRIVEENGSMKVDFEHYVKGIAPGQSAVF 349

Query: 368 YTSDSNEARVLGGGII 383
           Y  +     +LGGG +
Sbjct: 350 YEGND----LLGGGFL 361


>gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. C56-T3]
 gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. C56-T3]
          Length = 371

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 200/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYIATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--ARPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  V V V    D G  V F+     V  GQA VFY
Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
               N    LGGG I
Sbjct: 347 ----NGEECLGGGTI 357


>gi|225848332|ref|YP_002728495.1| tRNA-specific 2-thiouridylase MnmA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644575|gb|ACN99625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 351

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 210/366 (57%), Gaps = 22/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSS  A +LK+ GY VIG+TL+L    + S  K  CC+ +D+ DA++V  
Sbjct: 3   KVVVGLSGGVDSSTAAFILKQQGYQVIGITLKLSEVDQCSLDKQVCCSTKDILDAKKVAS 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + HYV D+++ F+  VI  F   Y +G TP PC  CNR VK   L    ++ L AD 
Sbjct: 63  FLGIPHYVIDWQDIFKEKVIDYFIREYQSGYTPNPCSICNREVKTGLLAKYAKKVLKADF 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHYI++    G+     +++ R +D  +DQSYF+    ++ +  L FPLGD  KE V
Sbjct: 123 FATGHYIKTDFLDGE-----KVIKRGVDTSKDQSYFMALVEKEVIDMLIFPLGDFTKEEV 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E  + ++ KS+S +ICF       +  K +  GI L+ GDIVH++G++LG+H G+
Sbjct: 178 RKIAYENKIPVSQKSESFEICFTAGKTPEEYFKSL--GIPLKIGDIVHVSGKVLGKHKGL 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG+   EPL+V+  D   + +IVG +E L    +  +  N+L        
Sbjct: 236 EAYTIGQRKGLGIRWKEPLYVIDKDPIKNTIIVGEKEHLLTDTVVAKNFNFL-------V 288

Query: 320 VVDGFKCF-VKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            ++ +K   V+ R  Q P+ V     + + + + F++ +  +A GQ    Y  D+    +
Sbjct: 289 PIEKWKNIQVQGRYRQKPIEVRDFHYDGELLKITFKEKQQKMAPGQILAVYQDDT----L 344

Query: 378 LGGGII 383
           LGGG+I
Sbjct: 345 LGGGVI 350


>gi|317125511|ref|YP_004099623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Intrasporangium calvum DSM 43043]
 gi|315589599|gb|ADU48896.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Intrasporangium calvum DSM 43043]
          Length = 365

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 201/376 (53%), Gaps = 24/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRVV AMSGGVDS+V AA +   G+DV+GV L L  S  A+ R+ +  CC  +D  DARR
Sbjct: 1   MRVVAAMSGGVDSAVAAARMLDAGHDVVGVHLALSQS-AATLRESARGCCTIEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D  ERFR  V+  F + YA G TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VADVLGIPFYVWDMAERFRRDVVEDFTAEYARGRTPNPCLRCNEKIKFAALLDKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +     G  G  RR + R +D  +DQSY L     +QL    FPLGD  K 
Sbjct: 120 DAVATGHYAQVVEVPGVGGGVRRELHRAVDSAKDQSYVLGVLDAEQLARAFFPLGDTTKP 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255
            +R+ A E G  +A K DS DICF+  G       R   G AL    GDIV  +G +LGR
Sbjct: 180 QIREEAAERGFFVARKPDSHDICFIPDGD-----TRAWLGRALGEAPGDIVDTDGAVLGR 234

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   YT+GQR+GLG++     G+P +VV +  ++++V+VG  + L V  I      W 
Sbjct: 235 HAGAFGYTVGQRKGLGLSRPAPDGQPRYVVEVRTDTNQVVVGTADLLGVDAITGDHARWC 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G      A     +   ++R+    VP     + D V V  ++   GVA GQ+ V Y   
Sbjct: 295 G-----PAPAGVVRVGAQVRAHGAEVPATAWADGDRVEVRLDERIRGVAPGQSVVLYEG- 348

Query: 372 SNEARVLGGGIISGSK 387
               RV+G   I+ ++
Sbjct: 349 ---TRVVGSATIASAR 361


>gi|329724654|gb|EGG61160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU144]
          Length = 372

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 205/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++EE++ + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  DDG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++K 
Sbjct: 121 DYVATGHYARIRRH--DDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + + +     A  G+++ LNG+ +G+H+G
Sbjct: 177 EVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV  + N + + V              E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYV--------------EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    V VQR N++ + V F +    +  
Sbjct: 281 DYLIASDYSFVNPSEIDLEKGFECTAKFRYRQKDTKVNVQRENENSIRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY    N+   LGG  I
Sbjct: 341 GQAVVFY----NQEVCLGGATI 358


>gi|159036753|ref|YP_001536006.1| tRNA-specific 2-thiouridylase MnmA [Salinispora arenicola CNS-205]
 gi|205816910|sp|A8M5E1|MNMA_SALAI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157915588|gb|ABV97015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinispora arenicola CNS-205]
          Length = 360

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/372 (39%), Positives = 203/372 (54%), Gaps = 24/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G+  CC  +D  DARR
Sbjct: 4   VRVLAAMSGGVDSAVAAARAVAAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERF+  V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 63  AADVIGIPFYVWDMAERFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +G DG    ++ R +DL +DQSY L   T++QL    FPLGD  K 
Sbjct: 123 DAVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLGRSMFPLGDSTKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRH 256
            VR  A   GL +ADK DS DICFV  G     + +R+    A  GD+V    G ++GRH
Sbjct: 175 QVRAEATGRGLTVADKPDSHDICFVADGDTRGFLAERLG---ATPGDVVDSSTGAVVGRH 231

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGL +      G P +V+ +   ++ V VGP E+L V ++  +   W G
Sbjct: 232 TGAYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVRAQRPVWTG 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                D +    +C V++R+  D VP  V    DG+  +  +   GVA+GQA V Y  D 
Sbjct: 292 GPRPADPI----ECEVQLRAHGDVVPATVAVTGDGLRAELHRPVRGVAAGQAIVAYRPDP 347

Query: 373 NEARVLGGGIIS 384
               VLG   I+
Sbjct: 348 GGDVVLGSATIA 359


>gi|327543019|gb|EGF29466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopirellula baltica WH47]
          Length = 399

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/396 (36%), Positives = 206/396 (52%), Gaps = 46/396 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR------------------ 63
           RVV+AMSGGVDSSV A LL RDG++VIGV ++   +  A+ R                  
Sbjct: 3   RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNANPLNLPVLG 62

Query: 64  ----------KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
                     K  CC+  D  DARRV  ++ +  Y  D +E FR  ++  F   Y A  T
Sbjct: 63  DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P PCV CN  +KF  L      + A+ +ATGHY R    V  +G  R  + R +D  +DQ
Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYAR---MVHSNG--RSELHRGLDGHKDQ 176

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           SY LF     +L  +  P+GD  K  +R++A  +GL ++DK DSQ+ICFV QG + D VK
Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236

Query: 234 --RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
             R     A  G+IV   G+++G H G   +TIGQR+ LGVAMGEP FV+ ++ ++ RV+
Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296

Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGV 348
           +G  E L    +   + NW    +  + + D     ++IR +  P P   V    +   +
Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F+  +  VA GQA V Y  +    RVLGGG I+
Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWIT 385


>gi|296171256|ref|ZP_06852660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894224|gb|EFG73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 358

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 204/377 (54%), Gaps = 32/377 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DA R
Sbjct: 1   MKILAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGALRTGSRGCCSKEDASDASR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ ERF+  VI  F SSYA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAERFQADVIDDFVSSYARGETPNPCVRCNQRIKFSALSAKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDHDKDQSYVLAVLTAEQLRHATFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A   GL +A K DS DICF+  G   D    +   IA+  G +V  +G +L +H+
Sbjct: 171 QIRAEAARRGLAVAAKPDSHDICFIPSG---DTRAFLGERIAVRRGAVVGADGAVLAQHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG- 312
           G+  +T+GQR+GLG+A     G P +V  +D +++ V VG    L+V  +  RE  +   
Sbjct: 228 GVHGFTVGQRKGLGIAGPGPDGRPRYVTEIDADTATVRVGDAADLDVLELRGREPVFTAG 287

Query: 313 ---DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               GL E        C V++R+  +  P   +   D + V       GVA GQ  V Y 
Sbjct: 288 RPPSGLVE--------CAVQVRAHGETAPAVAELVGDELIVRLRVPLRGVARGQTLVLYR 339

Query: 370 SDSNEARVLGGGIISGS 386
            D +   VLG   I+G+
Sbjct: 340 PDPDGDEVLGSATIAGT 356


>gi|183220730|ref|YP_001838726.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910831|ref|YP_001962386.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|205816873|sp|B0SPC6|MNMA_LEPBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816879|sp|B0SG84|MNMA_LEPBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167775507|gb|ABZ93808.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779152|gb|ABZ97450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 380

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 205/365 (56%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           +++VAMSGGVDS+V A LL   GYDVIGV L+   Y +      K SCC+ +D+ DAR V
Sbjct: 6   KIIVAMSGGVDSAVAAGLLMEAGYDVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++N+  YV   E+ F   VI  F S Y  G TP PCV+CN  VKF  L    ++LG D
Sbjct: 66  GLSLNIPFYVIKMEKVFGERVIDRFISDYKDGRTPNPCVECNTFVKFGALFEQAKKLGID 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  DG  R  +   +D++++Q+Y+L+  +Q  + +  FPLG+M K  
Sbjct: 126 KIATGHYAR---VIEVDG--RYAIRNAVDMKKNQTYYLYGLSQDNIKNTVFPLGEMDKSE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR++A+ MGL +A+K +SQ+ICF+ +  Y   +K+   G+        L +GQI+G+H G
Sbjct: 181 VREIAKRMGLPVAEKPESQEICFIPENDYRSFLKK--KGMEFTPGFFKLASGQIIGKHQG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              +TIGQR+GLG+A   PL+V+ ++ + + V++G  E        L EI +    L   
Sbjct: 239 KEGFTIGQRKGLGIAWKNPLYVLSIEDDGT-VVLGEEEETVSESFVLEEITY--QALAPL 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           A+    +  V+IR    PV   V    +   V+F +    V  GQ+  FY ++ +   + 
Sbjct: 296 ALGQSMEMKVQIRYRSAPVHCKVTSLGETWKVNFLEDVKSVTPGQSATFYPTNGD--YLF 353

Query: 379 GGGII 383
            GGII
Sbjct: 354 AGGII 358


>gi|82751221|ref|YP_416962.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
           [Staphylococcus aureus RF122]
 gi|123547857|sp|Q2YT57|MNMA_STAAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82656752|emb|CAI81181.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase tRNA
           [Staphylococcus aureus RF122]
          Length = 372

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 207/382 (54%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG II
Sbjct: 341 GQAVVFYQGDV----CLGGAII 358


>gi|32474336|ref|NP_867330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopirellula baltica SH 1]
 gi|81657396|sp|Q7TTZ4|MNMA_RHOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|32444874|emb|CAD74876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopirellula baltica SH 1]
          Length = 399

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/396 (36%), Positives = 206/396 (52%), Gaps = 46/396 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR------------------ 63
           RVV+AMSGGVDSSV A LL RDG++VIGV ++   +  A+ R                  
Sbjct: 3   RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNTNPLNLPVLG 62

Query: 64  ----------KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
                     K  CC+  D  DARRV  ++ +  Y  D +E FR  ++  F   Y A  T
Sbjct: 63  DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P PCV CN  +KF  L      + A+ +ATGHY R    V  +G  R  + R +D  +DQ
Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYAR---MVHSNG--RSELHRGLDGHKDQ 176

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           SY LF     +L  +  P+GD  K  +R++A  +GL ++DK DSQ+ICFV QG + D VK
Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236

Query: 234 --RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
             R     A  G+IV   G+++G H G   +TIGQR+ LGVAMGEP FV+ ++ ++ RV+
Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296

Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGV 348
           +G  E L    +   + NW    +  + + D     ++IR +  P P   V    +   +
Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F+  +  VA GQA V Y  +    RVLGGG I+
Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWIT 385


>gi|42523417|ref|NP_968797.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575623|emb|CAE79790.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 351

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 201/364 (55%), Gaps = 20/364 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDSS  AALL   GY+VIG T+Q+  Y++    +  G+CC+  DV DAR V D + 
Sbjct: 1   MSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDARAVADRLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV + E +FR AVI PF  +Y  G+TPLPCV+CN  +KF  L+   R+L  D +ATG
Sbjct: 61  IPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMRELECDYIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY +    V DD  +  I     D  +DQ+YFLF    + +  L FP+GDMKK  VR+ +
Sbjct: 121 HYAK---IVYDDKGKASIHTSTDDW-KDQTYFLFTIDPELVPKLLFPVGDMKKPQVREYS 176

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGI--ALEGDIVHL-NGQILGRHNGII 260
              GL  A K DSQ ICFV    Y + +K  + + I  + +G I     GQ++  H GI 
Sbjct: 177 ESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQVMASHEGIH 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT GQ +GLG+   E LFV+ +D + + V VG     E   ++  E++ +   L  D +
Sbjct: 237 NYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVG-----EEKHLFANEVDVVDPKLL-DEI 290

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            DG    VKIR      P  V +   G  + F + +  V  GQA VFY     + +++GG
Sbjct: 291 QDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFY----RDRQLVGG 346

Query: 381 GIIS 384
           G I+
Sbjct: 347 GWIT 350


>gi|146297250|ref|YP_001181021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205814264|sp|A4XLP5|MNMA_CALS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145410826|gb|ABP67830.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 361

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 204/368 (55%), Gaps = 15/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +     SCC+   V DAR+V
Sbjct: 4   KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQNECGEELITGKSCCSIYAVDDARKV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +YVF+ ++ FR  VI  F   Y  G TP PC+ CNR +KF   L     +G D
Sbjct: 64  ANILDIPYYVFNMKDDFRKIVIDYFIDEYIKGRTPNPCIMCNRKIKFELFLKKAIAIGMD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K+ 
Sbjct: 124 YIATGHY---AIIEYDSSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA +  L +A K DSQ+ICF+    Y   +++   GI  +G  V   G ILG+    
Sbjct: 181 VRKLAEKFKLPVAKKPDSQEICFIPDNNYGKFIEK-ETGIREDGVYVDTEGNILGKSKAY 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++ G+ ++VV +    ++V++G    +    +   ++N++     E  
Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVAIKPEENKVVLGEEGKIFADALIATDLNFIPFDKLESE 299

Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   KIR ++++     V   ++ V V F + +  +  GQ+ VFY +D     V+
Sbjct: 300 I----EVTAKIRYTAKEAKAKIVPMENNKVLVKFYEKQRAITPGQSVVFYNNDI----VV 351

Query: 379 GGGIISGS 386
           GGGII  +
Sbjct: 352 GGGIIEKA 359


>gi|295706703|ref|YP_003599778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium DSM 319]
 gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium DSM 319]
          Length = 370

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 207/375 (55%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R       DG+ +  M R +D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MTLGADYLATGHYARVAY---RDGEYK--MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E GL  A K DS  ICF+ +  + + + +     A  G +  L+G++ 
Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV   L+KN   V  G   E L    +    ++
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +  +   +     C  K R  Q    V V++ +DD + V F +    +  GQA VFY
Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      +GG  I
Sbjct: 347 KDD----ECVGGATI 357


>gi|42526204|ref|NP_971302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema denticola ATCC 35405]
 gi|81570437|sp|Q73PV6|MNMA_TREDE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41816316|gb|AAS11183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema denticola ATCC 35405]
          Length = 366

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 188/356 (52%), Gaps = 12/356 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+V +SGGVDS+V A LL   GYDV GVT+QL        ++ +     D+ DA++V 
Sbjct: 1   MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKEQT----DDIEDAKKVA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V+D  E F+  +I  F   Y  G TP PC  CN  +KF   L    + G D 
Sbjct: 57  DKLGIKHIVYDMRETFKTEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +       +G  R ++ +  D ++DQSYFL   TQ+QL    FPLGD  KE V
Sbjct: 117 IATGHYAKIE-KTEIEGDERFLLRQAEDAQKDQSYFLALLTQEQLSRSIFPLGDFTKEKV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A + DSQDICFV    Y  V+  + AG   EG  +   G  +GRH G+ 
Sbjct: 176 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL +AMG P++VV  D  ++ V VG  E L    +    +N +     +  +
Sbjct: 236 YYTIGQRRGLAIAMGYPVYVVKKDAKTNTVTVGKDEELFAESLIASRVNIILKKTIDKEI 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSD 371
               +   + R  +    +   +N++        V+F + E  VA GQA VFYT D
Sbjct: 296 --DIEVKTRYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYTGD 349


>gi|217967082|ref|YP_002352588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus turgidum DSM 6724]
 gi|217336181|gb|ACK41974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus turgidum DSM 6724]
          Length = 343

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 205/368 (55%), Gaps = 33/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V V MSGGVDSS+ A LLK++GY+VIG+T+ +  S               + DA++V 
Sbjct: 3   IKVAVGMSGGVDSSITAYLLKKEGYEVIGLTMNIAYS-------------SSIKDAKKVA 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N+ H+  D +  F   +I  F  SY  G TP PCV CN+ +KF  LL   ++LGAD 
Sbjct: 50  EYLNIPHFFVDLKNEFEEKIIKYFVESYKHGYTPNPCVFCNKLIKFGLLLEKAKELGADF 109

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L+TGHY+R    V D+ ++  ++ R  DL++DQSYFL   TQ+Q+    FPLG++ KE V
Sbjct: 110 LSTGHYVRK---VWDEERKTYLLMRAKDLKKDQSYFLGMLTQEQIKKTLFPLGELTKEEV 166

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHN 257
           R +A E+G+ +A+K +SQDICF+    Y   + +      LE   G I+  +G+ +G H+
Sbjct: 167 RKIADELGIFVANKKESQDICFLPDKDYKRFLSKY-----LEDKPGKIITEDGKEVGYHS 221

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+ ++TIGQRRGL VA+G P++V  +D N+  V V  RE +    +Y   +N+     F 
Sbjct: 222 GVFSFTIGQRRGLRVALGVPVYVRDIDPNTGNVTVTDREKVFGKEVYAVNVNY--PSYFP 279

Query: 318 DAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      + +  IR +  P P V    ++  V   F+  +  +  GQ  V Y  +     
Sbjct: 280 EK--RELRAYAMIRYNMKPSPGVLKIVSEKEVLFIFDDPQWAITPGQILVCYLDN----H 333

Query: 377 VLGGGIIS 384
           VL  GII 
Sbjct: 334 VLCAGIIE 341


>gi|262203144|ref|YP_003274352.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Gordonia bronchialis DSM 43247]
 gi|262086491|gb|ACY22459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Gordonia bronchialis DSM 43247]
          Length = 373

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/388 (39%), Positives = 208/388 (53%), Gaps = 30/388 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-STAPGALRTGSRGCCSREDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF++ VI  F ++YAAG+TP PC+ CN  VKF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKDDVIDEFVAAYAAGQTPNPCLTCNEKVKFAALAEKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+ RR     +D ++DQSY L   T++QL    FP+GD  K 
Sbjct: 120 DALATGHYARLA-----DGELRRA----VDADKDQSYVLAVLTRKQLGRAMFPVGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--HLNGQILGRH 256
            +R  A   GL +A+K DS DICF+  G   D    + A I L    V     G  L  H
Sbjct: 171 EIRAEAARRGLSVANKPDSHDICFIPSG---DTRAFLGARIGLRPGAVVDAATGDRLADH 227

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G+  +TIGQR+GLG+    A G+P +V  +D +S  V VG    LEV  I  R   W  
Sbjct: 228 EGVHGFTIGQRKGLGIDAPAADGKPRYVTDIDPDSGTVTVGTAADLEVWSISARRAVWT- 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
            G   D  VD   C V++R+     P     V R+ + G+ ++  +   GVA GQA V Y
Sbjct: 287 SGHTPDGPVD---CVVQVRAHGGLAPARATPVDRDGEPGIEIELTEPLTGVARGQAAVLY 343

Query: 369 TSDSNEAR-VLGGGIISGSKRSDAVEES 395
             D+     VLG G I+ +    AV  S
Sbjct: 344 LPDAQRGDLVLGCGRIAATSARGAVAPS 371


>gi|154686891|ref|YP_001422052.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens
           FZB42]
 gi|166234844|sp|A7Z745|MNMA_BACA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|154352742|gb|ABS74821.1| TrmU [Bacillus amyloliquefaciens FZB42]
          Length = 371

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 201/375 (53%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     G        M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARVDRSAG-----TVRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I    ++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           W   GL +   +    C  K R  Q+   V V+   DD   V F+     V  GQA VFY
Sbjct: 291 WTRPGLMDGGEM---TCTAKFRYRQEDHKVTVKMTGDDEAEVIFDGQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGE----ECLGGGTI 358


>gi|163785075|ref|ZP_02179792.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879656|gb|EDP73443.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/381 (38%), Positives = 206/381 (54%), Gaps = 49/381 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGGVDSSV A LLK  GYDV G+TL+L +S + S     CC+ QDV DA +V 
Sbjct: 1   MKVAVGMSGGVDSSVAALLLKEKGYDVTGITLKL-SSIENSCDIQVCCSPQDVKDAEKVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
             + + HY  D+E+ F+N VI  F +    G+TP PC  CNR +K   L   V    GAD
Sbjct: 60  SFLGIEHYTIDWEKDFKNKVIDYFVNELKEGKTPNPCSVCNREIKTGRLYKYVNLVFGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHYI++    G     ++++ R  DL++DQSYF+    ++ L  L FPLGD  KE 
Sbjct: 120 FLATGHYIKTVEING-----QKLIKRGKDLKKDQSYFMALVEKEVLNGLLFPLGDFTKEE 174

Query: 200 VRDLAREMGLDIADKSDSQDICF---------VQQGKYFDVVKRINAGIALEGDIVHLNG 250
           VR +A + GL ++ K DS +ICF         +++ K F++ K         GDI+H++G
Sbjct: 175 VRKIAEKYGLPVSQKKDSFEICFTAGKTPAEYIEENKIFELQK---------GDIIHISG 225

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN- 309
           + LG+H G+ +YTIGQRRGLGV   +PL+V+  +  ++ VIV     L    +   + N 
Sbjct: 226 KKLGKHRGLAHYTIGQRRGLGVRWHKPLYVIDKNVENNTVIVAEDNYLLTDTVKAEDFNF 285

Query: 310 ------WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASG 362
                 W G+              V+ R  Q PV V      +G+  +  ++ +V  ASG
Sbjct: 286 HLPIEKWEGN------------LNVQGRYRQKPVEVEDFSYKNGILEIKLKQPQVKFASG 333

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q    Y  D     +LGGGII
Sbjct: 334 QILAVYKDDI----LLGGGII 350


>gi|168700409|ref|ZP_02732686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemmata obscuriglobus UQM 2246]
          Length = 357

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 198/369 (53%), Gaps = 26/369 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKR---KGSCCAGQDVYDA 76
           RVV+AMSGGVDSS  A LLK+ G++VIG+ ++   +   +  +R   K  CC+  D  DA
Sbjct: 3   RVVLAMSGGVDSSASAVLLKKQGHEVIGLFMRTGTHGHDQPDERRDNKKGCCSAIDAGDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV D +++  Y  D+E  F N +I  FA  Y  G TP PCV CN  +KF  L +  ++L
Sbjct: 63  RRVADKLDIPFYALDFESEF-NRIIDYFADEYVRGRTPNPCVVCNNWLKFGQLWTFGQKL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + R     +G+    + + +D ++DQSY L    ++ L  L FP+G   
Sbjct: 122 GADFIATGHYAQVR-----NGE----LHKGVDADKDQSYVLHGIKREVLPHLLFPVGGYT 172

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R  ARE  L  +A+K DS +ICFV  G + DVV+    G A  G I   +G +LG 
Sbjct: 173 KPQIRQFAREASLVGVAEKPDSVEICFVPSGNHTDVVRARRPGAATAGVIAERDGTVLGD 232

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H+GI  YTIGQR+GL +  G+  FV+ L   ++ V+VG    L    +    +NWL    
Sbjct: 233 HDGIDRYTIGQRKGLNIGGGKKRFVLELLAETNTVVVGDESDLLSSGLVASGMNWL---- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   +   C  KIR     VP  V    D G  V F+  +  V  GQA   Y    + 
Sbjct: 289 -IDPPTEPLTCVAKIRYRHAGVPATVTALPDGGAEVVFDAPQPAVTPGQALALY----DG 343

Query: 375 ARVLGGGII 383
            RVLGGG I
Sbjct: 344 TRVLGGGWI 352


>gi|284035746|ref|YP_003385676.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirosoma linguale DSM 74]
 gi|283815039|gb|ADB36877.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirosoma linguale DSM 74]
          Length = 391

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 217/394 (55%), Gaps = 33/394 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGG+DSS+ A +L  +GY+VIG+T++   Y S   +K++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGIDSSLAAVMLHEEGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +  ++   HY+ D  E F +AVI  F   Y  G TP PCV CN  +K+  LL    +L
Sbjct: 63  RNIAVSLGFPHYILDIREEFGDAVIDHFTGEYLEGRTPNPCVMCNTHIKWDALLRRADRL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R    D+G  R ++ + +D  +DQSY L+  +Q+ L   + PLG ++
Sbjct: 123 DCESIATGHYAHIRE---DNG--RFVLSKGVDTLKDQSYVLWGVSQESLSRTKLPLGHLR 177

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIV-HLNGQ 251
           K  +RD+A E G +++  KS+S +ICFV    Y   +KR   G+  E   G+ V    G+
Sbjct: 178 KSEIRDMATERGFMELVTKSESYEICFVPDNDYRGFLKRRMPGLEAEVAGGNFVMEGTGK 237

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG+H G   YTIGQR+GLG+A G+P+FV  + K+++ V++G  + L    + + ++N  
Sbjct: 238 VLGKHQGYPFYTIGQRKGLGMAFGQPMFVTEIRKDTNEVVLGVDKDLYRDGMIVSKLN-- 295

Query: 312 GDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
              L +   ++G  +   K+R         + ++ D + V F++    +A GQA VFY  
Sbjct: 296 ---LQKYPTLNGPMETVTKVRYKDPGTAATISQSGDKIEVLFKEGVSAIAPGQAAVFYEG 352

Query: 371 DSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
           D     V+GGG I  S R            GDEF
Sbjct: 353 DD----VIGGGWIMKSFRQ-----------GDEF 371


>gi|300771093|ref|ZP_07080969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761763|gb|EFK58583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 363

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 18/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           RV+VAMSGGVDSSV A +L   GY+VIG+T++   Y S   S ++  CC+   + DAR +
Sbjct: 6   RVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDARAL 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                  H++ D  + F + VI  F   Y AG TP PCV CN  +K+  L+    +L  +
Sbjct: 66  AVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKLDCE 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY   RL+  ++G  R ++ +  D  +DQSY L+  TQ+ L   +FPLG   K+ 
Sbjct: 126 FIATGHYANIRLH--ENG--RHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFTKKE 181

Query: 200 VRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           +R +A +MG +++A+KS+S +ICFV    Y   ++     +  +   G+ +  +G ++G+
Sbjct: 182 IRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTVVGQ 241

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   +TIGQR+GLG+A+G+P+FV+ +   S+ V++G    LE  + Y+R IN +    
Sbjct: 242 HIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVKYA- 300

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              ++ +  +   KIR         + +  D + VDFE    G+A GQ+ VFY  +    
Sbjct: 301 ---SISEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHHVKGIAPGQSAVFYEGND--- 354

Query: 376 RVLGGGII 383
            ++GGG +
Sbjct: 355 -LIGGGFL 361


>gi|258424047|ref|ZP_05686929.1| tRNA methyl transferase [Staphylococcus aureus A9635]
 gi|257845668|gb|EEV69700.1| tRNA methyl transferase [Staphylococcus aureus A9635]
          Length = 372

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 206/371 (55%), Gaps = 22/371 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316
           ++ YTIGQR GLG+   G+P FVV   KN    ++   +    + +Y   +    D  F 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV--GKNLKDNVLYVEQGFHHNALYSDYL-IASDYSFV 291

Query: 317 --EDAVVD-GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
             ED  +D GF+C  K R  Q    VFV+R ND  + V F++    +  GQA VFY  D 
Sbjct: 292 NPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFDEPVRAITPGQAVVFYQGDV 351

Query: 373 NEARVLGGGII 383
                LGG  I
Sbjct: 352 ----CLGGATI 358


>gi|118473593|ref|YP_886701.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166235065|sp|A0QUW3|MNMA_MYCS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118174880|gb|ABK75776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 356

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 201/373 (53%), Gaps = 28/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF++ VI  F  SYA GETP PCV CN  +KFS L +    LG 
Sbjct: 60  VADILGIPFYVWDFADRFKDDVIDDFVESYARGETPNPCVRCNERIKFSALAARALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       DG+ RR     +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARL-----SDGRLRRA----VDADKDQSYVLGVLTAEQLRHALFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A E GL +A+K DS DICF+  G   D    + A I +  G +V  +G +L  H+
Sbjct: 171 QIRAEAAERGLAVAEKPDSHDICFIPTG---DTKAFLGARIGVRPGAVVDGSGTVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G P +V  +D  +  V VGP E LEV  +          
Sbjct: 228 GVHGFTIGQRKGLGIAGPGADGRPRYVTAIDAETGTVRVGPAEDLEVWELTGERP----- 282

Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +F   V  G   +C V++R+         +  D  + +       GVA GQ  V Y  D
Sbjct: 283 -VFTSGVEPGGPIECQVQVRAHGGITDTVAELRDGKLELSLRAPLRGVAPGQTMVLYRPD 341

Query: 372 SNEARVLGGGIIS 384
            +   V+    I+
Sbjct: 342 PDGDEVIASATIT 354


>gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
           pseudofirmus OF4]
 gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           pseudofirmus OF4]
          Length = 367

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 205/377 (54%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D +VVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    S   G C A +D 
Sbjct: 1   MKKRPEDTKVVVGMSGGVDSSVTALVLKEQGYDVIGIFMKNWDDTDES---GFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L+  
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  + R +D  +DQ+YFL A +QQQL    FP+G
Sbjct: 118 MALGADYVATGHYARVEEV---DGEFQ--LLRGVDSNKDQTYFLNALSQQQLSKTMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQ 251
            + K+ VR+ A    L  A K DS  ICF+ +  +    K   +G   A  G++  ++G+
Sbjct: 173 HIPKKEVREKALAADLATAKKKDSTGICFIGERNF----KEFLSGFLPAQPGEMQTVDGE 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           + G+H+G++ YT+GQR+GLG+   GEP FV+  D   + +IVG     + L    +    
Sbjct: 229 VKGQHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGFHNQGLYSEGLEAVH 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           +NW+            F+C  K R  QD   V V  + D G  V F++ E  +  GQA V
Sbjct: 289 LNWIS----PTKPTSEFRCTAKFRYRQDDQGVTVIPQEDGGALVKFDEPERAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGGG I
Sbjct: 345 FYEGDV----CLGGGTI 357


>gi|311069234|ref|YP_003974157.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942]
 gi|310869751|gb|ADP33226.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942]
          Length = 371

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 207/375 (55%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R    V   G + R M R +D  +DQ+YFL   T++QL  + FP+G
Sbjct: 118 LSLGADYLATGHYAR----VDRSGGKVR-MLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I   +++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITAADVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W   G+ +   +    C  K R  Q+   V V+   +    V F++    V  GQA VFY
Sbjct: 291 WTRTGILDGKEI---SCTAKFRYRQEDHKVTVRMTGESEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGEE----CLGGGTI 358


>gi|311029205|ref|ZP_07707295.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           sp. m3-13]
          Length = 368

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 204/377 (54%), Gaps = 26/377 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    S   G C A +D 
Sbjct: 1   MKKRPEDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDES---GFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  +V + I + +Y  ++E+++ + V   F   Y +G TP P V CN+ +KF   L+  
Sbjct: 58  EDVIKVSNQIGIPYYAVNFEKQYWDKVFTYFLEEYKSGRTPNPDVMCNKEIKFKAFLNHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ R  + R  D  +DQSYFL A +Q+QL    FPLG
Sbjct: 118 MSIGADYIATGHYARVEE---KDGQYR--LLRGADHNKDQSYFLNALSQKQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQ 251
            + K+ VR++A E GL  A K DS  ICF+ +  +    K   +G   A  G++  ++G+
Sbjct: 173 HLSKKEVREIAIEAGLATAKKKDSTGICFIGERNF----KEFLSGFLPAQPGEMQTVDGE 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           + G H+G++ YTIGQR+GLG+   GEP FV+  D   + +IVG     E L    +    
Sbjct: 229 MKGHHDGLMYYTIGQRQGLGIGGSGEPWFVIGKDLKRNVLIVGQGFHNEGLYSEGLEAIG 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACV 366
           +NW+   L        F C  K+R  Q+   V V   +DG   + F K +  +  GQA V
Sbjct: 289 MNWIKRDL---TFKQEFSCTAKMRYRQEDQEVTVYPQEDGTAKIYFHKRQRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D      +GGG I
Sbjct: 346 LYDGDI----CIGGGTI 358


>gi|239637572|ref|ZP_04678544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus warneri L37603]
 gi|239596790|gb|EEQ79315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus warneri L37603]
          Length = 372

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 208/371 (56%), Gaps = 22/371 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   QDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD+ K+
Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGIDNNKDQTYFLNQLSQQQLSKVMFPIGDIDKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E  L  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G H+G
Sbjct: 177 RVREIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGDMITLDGKKMGVHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314
           ++ YTIGQR GLG+   G+P FVV   L+ N   V  G   ++L    +   +++++ + 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVLYVEQGFHHDALYSDYLIASDVSFVNE- 293

Query: 315 LFEDAVVD-GFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
             +D  +D GF C  K R  Q    VFVQR D + + V F++    +  GQA VFY    
Sbjct: 294 --QDVDLDKGFYCTAKFRYRQKDTKVFVQREDNEAIRVTFDEPVRAITPGQAVVFY---- 347

Query: 373 NEARVLGGGII 383
           NE   LGG  I
Sbjct: 348 NEEVCLGGATI 358


>gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
 gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. WCH70]
          Length = 371

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 203/377 (53%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R       DG+ +  M R +D  +DQ+YFL    Q  L  + FP+G
Sbjct: 118 LSIGADYVATGHYARVEY---RDGEYK--MLRGVDQNKDQTYFLNQLGQSVLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A++ GL  A K DS  ICF+ +  + + +   N   A  G +  L+G++ 
Sbjct: 173 HLEKAQVRQIAKDAGLVTATKKDSTGICFIGERDFKEFLS--NYLPAKPGIMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LRE 307
           G+H+G++ YTIGQR GLG+   GEP FVV   KN    I+   +      +Y        
Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGSGEPWFVV--GKNVKENILYVAQGFNNEYLYSTSLIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +NW+ D        + F+C  K R  Q    V V   +DD V V F++    V  GQA V
Sbjct: 289 VNWVSD----RKPTNSFQCTAKFRYRQPDTGVTVHIIDDDKVEVVFDEPVRAVTPGQAVV 344

Query: 367 FYTSDSNEARVLGGGII 383
           FY    N    LGGG I
Sbjct: 345 FY----NGEECLGGGTI 357


>gi|256822321|ref|YP_003146284.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
 gi|256795860|gb|ACV26516.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
          Length = 367

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/384 (35%), Positives = 210/384 (54%), Gaps = 29/384 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           DK P++  V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ 
Sbjct: 3   DKAPENTHVIVGMSGGVDSSVSAYLLKKQGYQVEGLFMKNWEEDDTDE---YCSAAEDLA 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD + +     ++   + + V   F   Y AG TP P + CN+ +KF   L   +
Sbjct: 60  DAQAVCDKLGIKLRTVNFAAEYWDRVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLDYAQ 119

Query: 135 QLGADVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            LGAD +ATGHY+R     G+ DGK    + R +DL +DQSYFL+  + +++    FP+G
Sbjct: 120 LLGADYIATGHYVRR----GEADGK--ATLLRGLDLNKDQSYFLYGVSHEKIAKTLFPVG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A E GL  A K DS  ICF+ + K+ D +++     A  G+I    G+++
Sbjct: 174 CIEKPEVRKIAEEQGLVTAKKKDSTGICFIGERKFTDFLQQYLP--AQPGNIETPEGEVI 231

Query: 254 GRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYL 305
           G+HNG++ +T+GQR+GLG+     +  EP F +  D   + +IVG       L  H +  
Sbjct: 232 GKHNGLMYHTLGQRKGLGIGGRQDSSEEPWFTLNKDLKRNVLIVGQGHEHPLLMSHGLIA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
            +++W+      +   D F+C  K R  QD VP  V+R ND    V+F+  +  V  GQ+
Sbjct: 292 DKLDWIAT----EPPSDEFRCTAKTRYRQDDVPCQVKRLNDTQWLVEFDDKQRAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            VFY  +      LGGGII   +R
Sbjct: 348 VVFYQGEV----CLGGGIIKEIRR 367


>gi|83816248|ref|YP_446592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinibacter ruber DSM 13855]
 gi|123528021|sp|Q2RZN9|MNMA_SALRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83757642|gb|ABC45755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinibacter ruber DSM 13855]
          Length = 383

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 203/374 (54%), Gaps = 21/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYD 75
           K  RV+VAMSGGVDSSV A LLK  GYDV+G+T++ ++   +  R G    CC+ + + D
Sbjct: 3   KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V       H+V D  E F + VI  F   Y +G TP PCV CN  +K+  LL     
Sbjct: 63  ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L  + +ATGHY   R    DD + R ++ R +D  +DQSY L+   Q+ L    FPLG  
Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251
           +K  +R++A E GLD +ADK DS +ICF+    Y   +K    G+  E   G  V  +G 
Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+G   YTIGQRRGL +A+GE ++V  +D  ++ + VGP+E L    +   EIN  
Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPKEELMEQTLTAHEIN-- 297

Query: 312 GDGLFEDAVVDGFK-CFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369
              L +   +DG +  +  IR + D       Q ++D + V F + +  +  GQ+ V Y 
Sbjct: 298 ---LVKYPELDGERPAWGTIRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYE 354

Query: 370 SDSNEARVLGGGII 383
            +     VLGGG I
Sbjct: 355 DED----VLGGGWI 364


>gi|221141109|ref|ZP_03565602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
          Length = 364

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|169630437|ref|YP_001704086.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium abscessus ATCC
           19977]
 gi|229486416|sp|B1MDW3|MNMA_MYCA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169242404|emb|CAM63432.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium abscessus]
          Length = 356

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 203/371 (54%), Gaps = 24/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDSSV AA +   G++V+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKILAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-SAAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  +YA G TP PCV CN  +KF+ L      LG 
Sbjct: 60  VADMLGIPFYVWDFADRFKEDVIDDFVEAYAEGRTPNPCVKCNEKIKFAALADRAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R +     DG+ RR     +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLQ-----DGRLRRA----VDADKDQSYVLGVLTPEQLRRAMFPVGDSPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A + GL +A+K DS DICF+  G   D    + A I +  G++V  +G +L  H 
Sbjct: 171 DIRAEAEQRGLLVANKPDSHDICFIPSG---DTQAFLGARIGVRRGNVVDADGSVLATHA 227

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+    A G P +V  +D  ++ V VG  E LE+       + W   
Sbjct: 228 GVHEFTIGQRKGLGLVGPAADGRPRYVTSIDAETATVRVGTVEDLEIWEFGGEPVVWTSG 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            +    +    +C V++R+    V   V+   + ++V    +  GVA GQ  V Y  D+ 
Sbjct: 288 RVPGQPI----ECQVQVRAHGSVVDAIVEPGAERIHVRLRTALRGVAPGQTVVLYRPDAE 343

Query: 374 EARVLGGGIIS 384
              VLG  +I+
Sbjct: 344 GDEVLGSAVIT 354


>gi|227540270|ref|ZP_03970319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239914|gb|EEI89929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 363

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 18/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           RV+VAMSGGVDSSV A +L   GY+VIG+T++   Y S   S ++  CC+   + DAR +
Sbjct: 6   RVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDARAL 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                  H++ D  + F + VI  F   Y AG TP PCV CN  +K+  L+    +L  +
Sbjct: 66  AVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKLDCE 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY   RL+  ++G  R ++ +  D  +DQSY L+  TQ+ L   +FPLG   K+ 
Sbjct: 126 FIATGHYANIRLH--ENG--RHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFTKKE 181

Query: 200 VRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           +R +A +MG +++A+KS+S +ICFV    Y   ++     +  +   G+ +  +G ++G+
Sbjct: 182 IRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTVVGQ 241

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   +TIGQR+GLG+A+G+P+FV+ +   S+ V++G    LE  + Y+R IN +    
Sbjct: 242 HIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVKYA- 300

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              ++ +  +   KIR         + +  D + VDFE    G+A GQ+ VFY  +    
Sbjct: 301 ---SLSEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHYVKGIAPGQSAVFYEGND--- 354

Query: 376 RVLGGGII 383
            ++GGG +
Sbjct: 355 -LIGGGFL 361


>gi|308174451|ref|YP_003921156.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307607315|emb|CBI43686.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus amyloliquefaciens DSM 7]
 gi|328912774|gb|AEB64370.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus amyloliquefaciens LL3]
          Length = 371

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/375 (38%), Positives = 202/375 (53%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R    V   G   R M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYAR----VDRSGDTVR-MLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W   GL +   +    C  K R  Q+   V V+    D   + F+     V  GQA VFY
Sbjct: 291 WTRPGLMDGGEM---TCTAKFRYRQEDHKVTVKMTGADEAEIIFDGQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGE----ECLGGGTI 358


>gi|15924611|ref|NP_372145.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156979939|ref|YP_001442198.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006407|ref|ZP_05145008.2| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|24638325|sp|Q931Q6|MNMA_STAAM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235085|sp|A7X333|MNMA_STAA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14247392|dbj|BAB57783.1| tRNA-methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722074|dbj|BAF78491.1| 5-methylaminomethyl-2-thiouridylate- methyltransf erase
           [Staphylococcus aureus subsp. aureus Mu3]
          Length = 372

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|323442826|gb|EGB00451.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O46]
          Length = 372

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGNVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|15927201|ref|NP_374734.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49483866|ref|YP_041090.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57650503|ref|YP_186516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|148268102|ref|YP_001247045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394170|ref|YP_001316845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221735|ref|YP_001332557.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509848|ref|YP_001575507.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316605|ref|ZP_04839818.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732278|ref|ZP_04866443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733127|ref|ZP_04867292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425746|ref|ZP_05602170.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428406|ref|ZP_05604804.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431044|ref|ZP_05607423.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433730|ref|ZP_05610088.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436645|ref|ZP_05612689.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876]
 gi|257793696|ref|ZP_05642675.1| tRNA methyl transferase [Staphylococcus aureus A9781]
 gi|258411005|ref|ZP_05681285.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763]
 gi|258420193|ref|ZP_05683148.1| tRNA methyl transferase [Staphylococcus aureus A9719]
 gi|258438195|ref|ZP_05689479.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299]
 gi|258443658|ref|ZP_05691997.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115]
 gi|258446865|ref|ZP_05695019.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300]
 gi|258448779|ref|ZP_05696891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus A6224]
 gi|258450551|ref|ZP_05698613.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948]
 gi|258453598|ref|ZP_05701576.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937]
 gi|262048616|ref|ZP_06021499.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Staphylococcus aureus D30]
 gi|269203247|ref|YP_003282516.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893124|ref|ZP_06301358.1| tRNA methyl transferase [Staphylococcus aureus A8117]
 gi|282904202|ref|ZP_06312090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906028|ref|ZP_06313883.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908941|ref|ZP_06316759.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911258|ref|ZP_06319060.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914426|ref|ZP_06322212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282916890|ref|ZP_06324648.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139]
 gi|282919396|ref|ZP_06327131.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427]
 gi|282920169|ref|ZP_06327894.1| tRNA methyl transferase [Staphylococcus aureus A9765]
 gi|282924721|ref|ZP_06332389.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101]
 gi|282928255|ref|ZP_06335860.1| tRNA methyl transferase [Staphylococcus aureus A10102]
 gi|283958382|ref|ZP_06375833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024678|ref|ZP_06379076.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus 132]
 gi|293503501|ref|ZP_06667348.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510518|ref|ZP_06669224.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809]
 gi|293531058|ref|ZP_06671740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294848651|ref|ZP_06789397.1| tRNA methyl transferase [Staphylococcus aureus A9754]
 gi|295406743|ref|ZP_06816548.1| tRNA methyl transferase [Staphylococcus aureus A8819]
 gi|295428198|ref|ZP_06820830.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275907|ref|ZP_06858414.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245675|ref|ZP_06929540.1| tRNA methyl transferase [Staphylococcus aureus A8796]
 gi|297590835|ref|ZP_06949473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|304380782|ref|ZP_07363449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|24638330|sp|Q99TM8|MNMA_STAAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56749735|sp|Q6GG82|MNMA_STAAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71153356|sp|Q5HFE1|MNMA_STAAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|172048920|sp|A6QHG3|MNMA_STAAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040510|sp|A6U290|MNMA_STAA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040511|sp|A5ITE6|MNMA_STAA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040512|sp|A8Z4F9|MNMA_STAAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829108|sp|Q2FGA5|MNMA_STAA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829109|sp|Q2FXV6|MNMA_STAA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13701419|dbj|BAB42713.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus N315]
 gi|49241995|emb|CAG40692.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284689|gb|AAW36783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|147741171|gb|ABQ49469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946622|gb|ABR52558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374535|dbj|BAF67795.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368657|gb|ABX29628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253724067|gb|EES92796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728883|gb|EES97612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271440|gb|EEV03586.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275247|gb|EEV06734.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278247|gb|EEV08889.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281823|gb|EEV11960.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283996|gb|EEV14119.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876]
 gi|257787668|gb|EEV26008.1| tRNA methyl transferase [Staphylococcus aureus A9781]
 gi|257840155|gb|EEV64619.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763]
 gi|257843904|gb|EEV68298.1| tRNA methyl transferase [Staphylococcus aureus A9719]
 gi|257848239|gb|EEV72230.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299]
 gi|257851064|gb|EEV75007.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115]
 gi|257854440|gb|EEV77389.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300]
 gi|257858057|gb|EEV80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus A6224]
 gi|257861709|gb|EEV84508.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948]
 gi|257864329|gb|EEV87079.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937]
 gi|259163263|gb|EEW47822.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Staphylococcus aureus D30]
 gi|262075537|gb|ACY11510.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941107|emb|CBI49493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313556|gb|EFB43951.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101]
 gi|282317206|gb|EFB47580.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427]
 gi|282319377|gb|EFB49729.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139]
 gi|282321607|gb|EFB51932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324953|gb|EFB55263.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327205|gb|EFB57500.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331320|gb|EFB60834.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590062|gb|EFB95144.1| tRNA methyl transferase [Staphylococcus aureus A10102]
 gi|282594517|gb|EFB99502.1| tRNA methyl transferase [Staphylococcus aureus A9765]
 gi|282595820|gb|EFC00784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282764442|gb|EFC04568.1| tRNA methyl transferase [Staphylococcus aureus A8117]
 gi|283470898|emb|CAQ50109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790531|gb|EFC29348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817303|gb|ADC37790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus 04-02981]
 gi|290920326|gb|EFD97392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095167|gb|EFE25432.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466882|gb|EFF09402.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809]
 gi|294824677|gb|EFG41100.1| tRNA methyl transferase [Staphylococcus aureus A9754]
 gi|294968490|gb|EFG44514.1| tRNA methyl transferase [Staphylococcus aureus A8819]
 gi|295128556|gb|EFG58190.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297177326|gb|EFH36578.1| tRNA methyl transferase [Staphylococcus aureus A8796]
 gi|297575721|gb|EFH94437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|302333295|gb|ADL23488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751450|gb|ADL65627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340658|gb|EFM06591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312437911|gb|ADQ76982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830008|emb|CBX34850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129903|gb|EFT85893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195521|gb|EFU25908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198681|gb|EFU29009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140492|gb|EFW32346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144031|gb|EFW35800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439031|gb|EGA96763.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O11]
 gi|329314296|gb|AEB88709.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727166|gb|EGG63622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728421|gb|EGG64858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 372

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus selenitireducens MLS10]
 gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus selenitireducens MLS10]
          Length = 371

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 216/384 (56%), Gaps = 23/384 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +K P+D R+VV MSGGVDSSV A LLK  GY+VIG+ ++ ++    +   G C A +
Sbjct: 1   MNNEKRPEDTRIVVGMSGGVDSSVTAHLLKEQGYEVIGIFMKNWDD---TDEFGVCTATE 57

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D  RVC+ +++ +Y  ++E+++ + V   F   Y +G TP P V CN+ +KF   L 
Sbjct: 58  DYEDVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLDEYKSGRTPNPDVMCNKEIKFKAFLD 117

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY  +++    DG +   + R  D  +DQ+YFL A +Q QL  + FP
Sbjct: 118 HAMTLGADYVATGHY--AKVSHTPDGVK---LLRGKDRNKDQTYFLNALSQDQLRHVLFP 172

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LGD++K  VR++A E GL  A K DS  ICF+ +  + + +       A  G++  L+G+
Sbjct: 173 LGDIEKPRVREIAEEAGLATAGKKDSTGICFIGERNFKEFLSEYLP--AQPGNMETLDGE 230

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           + G H+G++ YT+GQR+GLG+   GEP FV+  D + + ++VG      +L    +    
Sbjct: 231 VKGTHDGLMYYTLGQRQGLGIGGSGEPWFVIDKDLSRNVLLVGQGFHHPALYSEGLKADG 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           +NW+       A  + F C VK R  Q      V    DG V + F+++E  V  GQA V
Sbjct: 291 VNWVAG----SAPAERFHCTVKTRYRQQDRGATVTVEPDGSVTLMFDEAERAVTPGQAVV 346

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY    ++   LGGG I+   +S+
Sbjct: 347 FY----DDEICLGGGTINERIKSE 366


>gi|329733069|gb|EGG69406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 372

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVV+ MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVIGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|257462397|ref|ZP_05626811.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
 gi|317060061|ref|ZP_07924546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313685737|gb|EFS22572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 350

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 206/371 (55%), Gaps = 40/371 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV +A+SGGVDSS VA LLK+ GYD+ GVT++              C  +D  DA++VC
Sbjct: 13  IRVGIALSGGVDSSTVAYLLKKRGYDIFGVTMR-------------TCHEEDA-DAKKVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + HYV D  E F   V+  F   Y  G TP PC+ CNR +KF  LL    + GA  
Sbjct: 59  QDLGIQHYVLDLTEDFSEKVMDYFVEEYMQGRTPNPCMVCNRHIKFGKLLDFILEQGAQY 118

Query: 141 LATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY +     L VGDDG             +DQ YFL    +++L ++ FP+GD++K
Sbjct: 119 MATGHYTKLVDGHLSVGDDGG------------KDQVYFLSQVPKEKLKNIIFPVGDLEK 166

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGR 255
             VR+LA+E+G+ +  K DSQ+ICFV+ G  K F ++++    +  +G+IV  +G+ILG+
Sbjct: 167 RQVRELAKELGVRVHAKKDSQEICFVEDGQLKQF-LIEKTKGKVYNKGNIVDRDGKILGK 225

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDG 314
           HNG+  YTIGQR+GLG++   PL+VV L+   + +IVG  E L   ++     N +L + 
Sbjct: 226 HNGLSFYTIGQRKGLGISSESPLYVVELNSERNEIIVGNNEDLMREKLIAERCNLFLVEH 285

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSN 373
           L E   +   +C+ K RS        ++     + V F  + V  V  GQ  VFY   + 
Sbjct: 286 LEE---LHDMECYAKTRSRDSLHACRLEVVGKEIVVHFINNRVRAVTPGQGVVFY---NE 339

Query: 374 EARVLGGGIIS 384
           + +V+ GG I 
Sbjct: 340 QGQVIAGGFIK 350


>gi|283770696|ref|ZP_06343588.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460843|gb|EFC07933.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 372

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--TRIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAELVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|38233668|ref|NP_939435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|73920122|sp|Q6NHQ7|MNMA_CORDI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|38199929|emb|CAE49597.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium diphtheriae]
          Length = 366

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 203/376 (53%), Gaps = 19/376 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L    +  +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F SSY AGETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIRSRLYV-GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R    V G DG  R    R +D ++DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPVDGGDGYLR----RSIDPDKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A  MG  +A K DS DICF+  G     + R + G+   G IV  +G  L  H+G
Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGR-HIGLR-PGMIVDSDGNELKEHDG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G+P +V  +D  +  V VG RE+L+V  +    + +L   
Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTNIDAATGTVTVGSRENLKVIALTADRLKYL--- 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               A+   F+  V++R+    V   V V  +DD + V+      GVA GQA V Y  D 
Sbjct: 292 --HPAMTGSFEAEVQVRAHGSVVACSVMVNESDDTMRVELHTPLSGVARGQAAVIYLPDD 349

Query: 373 NEARVLGGGIISGSKR 388
           +   VLG G I  ++ 
Sbjct: 350 DGDIVLGSGTICATEH 365


>gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. Y412MC10]
 gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. Y412MC10]
          Length = 375

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 210/385 (54%), Gaps = 25/385 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + + K   + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A  
Sbjct: 5   ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D RRVC+ +++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+
Sbjct: 62  DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 121

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    + +DG+ R  + R +D  +DQ+YFL A +Q+QL    FP
Sbjct: 122 KAMDLGADYVATGHYARV---IEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLAKAMFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           +G + K  VR LA E GL  A K DS  +CF+ +  + + + +     A  GD+V +  G
Sbjct: 177 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 234

Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYL 305
           ++ GRH+G++ YT+GQR+     G   GEP FV    L  N   V+ G   SL    +  
Sbjct: 235 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 294

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
             INW+     +DA+  D + C  K R  Q    V +   +DG V+V F K +  +  GQ
Sbjct: 295 SGINWIAG---QDAMPKDAYTCTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           A VFY  D      LGGG I  + +
Sbjct: 352 AVVFYQGD----ECLGGGTIETADK 372


>gi|320335245|ref|YP_004171956.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM
           21211]
 gi|319756534|gb|ADV68291.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM
           21211]
          Length = 386

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 201/370 (54%), Gaps = 15/370 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV A LLK  GYDVIG  ++ +   K +    SCC+    Y+ARRV D
Sbjct: 11  RVLCAMSGGVDSSVSAQLLKDQGYDVIGAMMRFWPDNKRTDTFDSCCSPDAAYEARRVAD 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y+ DY + F+  ++ PF   YA G TP PCV+CN  VKF  L+   R LG + +
Sbjct: 71  QVGVPFYLLDYRDEFKRNIMDPFLEDYARGRTPNPCVNCNTKVKFDALVKKARMLGCEYV 130

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       DG       R  D  +DQ+YFL+ T +  L  + FP+G M+K  VR
Sbjct: 131 ATGHYVRREDVPTADGGVEVQFHRGDDPRKDQTYFLWGTPRDALKYILFPVGQMEKPRVR 190

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260
           ++A E GL  A K +SQ+ICFV  G   D V          G IV ++ G ++G H G  
Sbjct: 191 EIAEEHGLLTAQKPESQNICFV-PGAVKDFVAEFVP--QRTGYIVDIHTGDVVGEHLGTQ 247

Query: 261 NYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQ++GLG+    E  FVV+LD +++ V VG +   +   +  R  N+L D      
Sbjct: 248 FYTLGQKKGLGLYKTHEVRFVVHLDPDTNIVWVGDQVDCQWTGVRARGANYLLDVADLPQ 307

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            VD     V++R    PV   V R D DG  + F +++  V  GQ+ V Y    +  R+L
Sbjct: 308 EVD-----VQVRYRTKPVRARVLRADEDGFELAFAEAQFAVTPGQSAVLY----DGTRLL 358

Query: 379 GGGIISGSKR 388
           GGG+I    R
Sbjct: 359 GGGLIEDHVR 368


>gi|325473540|gb|EGC76733.1| tRNA-specific 2-thiouridylase mnmA [Treponema denticola F0402]
          Length = 383

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 191/356 (53%), Gaps = 12/356 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+V +SGGVDS+V A LL   GYDV GVT+QL        ++ +     D+ DA++V 
Sbjct: 18  MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKEQT----DDIEDAKKVA 73

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H V+D  E F+  +I  F   Y  G TP PC  CN  +KF   L    + G D 
Sbjct: 74  AKLGIKHIVYDMRETFKAEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 133

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +       +G+ R ++ +  D+++DQSYFL   TQ+QL    FPLGD  K+ V
Sbjct: 134 IATGHYAKIE-KTEIEGEERFLLRQAEDVQKDQSYFLALLTQEQLSHSIFPLGDFTKKKV 192

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A + DSQDICFV    Y  V+  + AG   EG  +   G  +GRH G+ 
Sbjct: 193 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 252

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL +AMG P++VV  D  ++ V VG  E L    +   ++N +     ++ +
Sbjct: 253 YYTIGQRRGLAIAMGYPVYVVKKDAKANTVTVGKDEELFAESLIASDVNIISKKTIDEEI 312

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSD 371
               K   + R  +    +   +N++        V+F + E  VA GQA VFY+ D
Sbjct: 313 DIEIKT--RYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYSGD 366


>gi|296140603|ref|YP_003647846.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Tsukamurella paurometabola DSM 20162]
 gi|296028737|gb|ADG79507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Tsukamurella paurometabola DSM 20162]
          Length = 365

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 201/380 (52%), Gaps = 26/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSEA-PGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RFR  VI  F ++YAAGETP PC+ CN  +KFS L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFREDVIDDFVAAYAAGETPNPCLRCNEKIKFSALAERAYALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +RL  G+       + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHY--ARLQGGE-------LRRAVDPDKDQSYVLAVLTAEQLSRAMFPVGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--HLNGQILGRH 256
            +R+ A   GL +ADK DS DICF+  G   D    + A I +    V     G+ LG H
Sbjct: 171 LIREEAARRGLAVADKPDSHDICFIPSG---DTQAFLGARIGVRPGAVVDAATGERLGEH 227

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G+  +TIGQR+GLG+      G P +V  +D  S  V VG  E L+V RI      W  
Sbjct: 228 GGVHEFTIGQRKGLGLPGPGPDGAPRYVTAIDAASGEVRVGRGEQLDVTRIVADGAVWTS 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
             +    +    +  V++R+     PV  +   D + +D  +   GVA GQA V Y  D 
Sbjct: 288 GSVPTQPI----EAMVQVRAHGGLAPVTARAEGDRIVMDLAEPLRGVAPGQAAVLYAPDQ 343

Query: 373 NEAR-VLGGGIISGSKRSDA 391
           +    V+G G I  +  + A
Sbjct: 344 DRGDLVVGSGTIRSTAHATA 363


>gi|169832175|ref|YP_001718157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Desulforudis audaxviator MP104C]
 gi|205816638|sp|B1I677|MNMA_DESAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169639019|gb|ACA60525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 343

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 195/366 (53%), Gaps = 26/366 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA+SGGVDSS  A L+K  G+ V  +T+   N R A+             +A RV   
Sbjct: 4   VAVALSGGVDSSTTALLMKEAGHRVFTLTMAT-NDRVAA-------------EAARVSAF 49

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D    F   VI PF ++Y  G TP PC+ CNR +K+  L     + GAD  A
Sbjct: 50  LGLPHHVLDISGLFEQRVIGPFCAAYLEGRTPNPCIACNRDLKYGTLFRQAVEWGADYFA 109

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R    +    R ++ R  D  +DQSY LF   Q++L  L  PLGD+ KE+VR+
Sbjct: 110 TGHYARVRF---EPEPGRYVLLRARDPRKDQSYVLFYLDQERLARLLLPLGDLTKETVRE 166

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
            AR  G+     ++SQ+ICFV    Y   ++R       EG  V   G +LGRH GI  Y
Sbjct: 167 KARAAGIPF-TAAESQEICFVAGDDYRTFIRRRCGQAVAEGPFVDRQGNVLGRHRGIPFY 225

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+A+G P+FV+  ++  + VIVGP E L        +++++   L + A   
Sbjct: 226 TIGQRRGLGLALGRPVFVLGFNRERNAVIVGPEEELWHTAFLAVDVHYI---LPQPAGGT 282

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
             +  ++ R+   P  ++ Q   D   V FEK +  +  GQA VFY  +    RV+GGGI
Sbjct: 283 LIEAQIRYRAKAAPARLYPQ-PPDAARVVFEKPQRAITPGQAAVFYQGE----RVVGGGI 337

Query: 383 ISGSKR 388
           IS + R
Sbjct: 338 ISCAVR 343


>gi|196232683|ref|ZP_03131534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chthoniobacter flavus Ellin428]
 gi|196223143|gb|EDY17662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chthoniobacter flavus Ellin428]
          Length = 363

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 185/361 (51%), Gaps = 13/361 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLKR GYDV+GVT++++     S+ +  CC  Q + DAR V   + V 
Sbjct: 1   MSGGVDSSVAAYLLKRQGYDVVGVTMKVWPQDCISRAEDKCCGPQAIADARGVAHALGVP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D  E F   VI  F   Y  G TP PCV CN  VKF +L    + LGA+ +ATGHY
Sbjct: 61  HYVVDEGENFERLVIDYFTEEYKNGRTPNPCVMCNEKVKFGNLWGKAKALGAEYIATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
                 + +    R ++ +  D  +DQSYFLF+  Q QL     PLG+M K  +R +AR+
Sbjct: 121 A-----IIEHHADRAVLRKGRDPRKDQSYFLFSLRQAQLQHAICPLGEMSKPEIRAIARQ 175

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           +GL +A+K DSQ+ICFV    Y   +K  + AG    G I    G  L  H GI  +TIG
Sbjct: 176 LGLKVAEKEDSQEICFVPGNDYKAFLKSHMGAGEFHPGGIYDKAGNRLAEHEGIEMFTIG 235

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE--DAVVDG 323
           QR+GL      P +V+ +D  +S VIVG  E L      +    W          +  + 
Sbjct: 236 QRKGLPGGSPRPRYVIDIDPVTSSVIVGDAEDLITGEFTIDHCMWHPSTSLRAGGSATEP 295

Query: 324 FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
           F+  VKIR         V   ++G   V   K +  V  GQA V Y  D     VLGGG 
Sbjct: 296 FEVNVKIRYGHAGADATVYPGENGEARVRLHKPQRAVTPGQAAVCYRGDE----VLGGGW 351

Query: 383 I 383
           I
Sbjct: 352 I 352


>gi|148240074|ref|YP_001225461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7803]
 gi|205828977|sp|A5GMJ9|MNMA_SYNPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147848613|emb|CAK24164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7803]
          Length = 389

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/400 (36%), Positives = 215/400 (53%), Gaps = 34/400 (8%)

Query: 3   VSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           V+ AT   +  LD+    P + RV V +SGGVDSS+ AALL   G++V G+TL L +   
Sbjct: 7   VTAATPAGAEALDRLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG-- 64

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               KG+CCA + + DA  +C+ + + H+V D  + F+  ++      Y AG TPLPC  
Sbjct: 65  ----KGACCA-EGLVDAAGICEQLEIPHHVVDSRDTFQREIVNGLIEGYQAGITPLPCSR 119

Query: 120 CNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           CNR VKFS +L   ++  G   +ATGHY R R    D+   R  + R +D  +DQSYFL+
Sbjct: 120 CNRAVKFSPMLQWAQEKRGLARIATGHYARLRF---DETTGRWRLLRGLDARKDQSYFLY 176

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
             TQ+ L  + FPLG++ K   R  A   GL  A K +SQD+C      +  +   ++A 
Sbjct: 177 DLTQEVLARVVFPLGELTKPDTRLEAARHGLRTAAKPESQDLCLADH--HGSMRAFLDAY 234

Query: 239 IAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
           +   +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V  R+ 
Sbjct: 235 LPPRQGEIVLQDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRDQ 294

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-----VFVQRNDDGV---- 348
                  +  INW+   +   A        V++R    PVP     +  + +D       
Sbjct: 295 AGRSHCVVGAINWV--SMAPPAPEHSQMVQVQVRYRSAPVPARLTTMTAEASDAAAERPH 352

Query: 349 --YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
              +DF++ +  +  GQA VFY  D+    VLGGG+I  S
Sbjct: 353 RCRLDFDEPQFSITPGQAAVFYDGDA----VLGGGLIQTS 388


>gi|297624808|ref|YP_003706242.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Truepera radiovictrix DSM 17093]
 gi|297165988|gb|ADI15699.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Truepera radiovictrix DSM 17093]
          Length = 372

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 197/387 (50%), Gaps = 23/387 (5%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +++ +  L     D  PK  RV+ AMSGGVDSS+ AALLK  GY V G  L+ +   +  
Sbjct: 1   MLAPSPTLEPQTTDAAPKG-RVLCAMSGGVDSSLAAALLKEAGYAVQGAMLRFWPDDRPK 59

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                CC+    +DARRV D I+V  Y+ D  E+F   VI PF  +Y AG TP PCV CN
Sbjct: 60  GAFDLCCSPDAAFDARRVADAIDVPFYLLDAREQFDEVVISPFVPTYEAGRTPNPCVWCN 119

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           R +KF   L   R+LG D +ATGHY+R       DG     + R  D  +DQ+YFL+A  
Sbjct: 120 REIKFGTFLKKARRLGCDYIATGHYVRRV-----DGPGGVELHRGEDDTKDQTYFLWALE 174

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGI 239
           +  L  L FPLG + K  VR+LA   G   ADK  S  +CF+      Y         G 
Sbjct: 175 RSILPHLLFPLGALSKTQVRELAEARGFATADKRSSHGLCFITTSVKDYLRDFSERRPGA 234

Query: 240 ALEGDIVHLNG-QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRES 297
            L+      +G + +G H+G+  YTIGQRRGLG+       FVV L   ++ VIVG RE 
Sbjct: 235 VLDAS----DGFKKVGEHSGVQFYTIGQRRGLGLYHSHLERFVVDLRSETNEVIVGTREM 290

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
                +   + NWL      DA     +  V+ R  Q PVP  V+ +     + F++   
Sbjct: 291 CHWRGLRAEQANWL-----LDAAEVPERVLVQTRYRQRPVPASVRLSGSSFELRFDEPMF 345

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ V Y    +  R+LGGG+I+
Sbjct: 346 AVTLGQSAVLY----HGTRLLGGGVIT 368


>gi|118467226|ref|YP_883033.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium 104]
 gi|118168513|gb|ABK69410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium avium 104]
          Length = 352

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 200/369 (54%), Gaps = 24/369 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG D +ATG
Sbjct: 60  IPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGFDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R        G R R   R +D ++DQSY L   + +QL    FP+GD  K  +R+ A
Sbjct: 120 HYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKPQIREEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIINYT 263
              GL +A+K DS DICF+  G     + +RI       G +V+ +G +L  H+G+  +T
Sbjct: 171 ARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVNADGTVLAEHDGVHGFT 227

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +        A
Sbjct: 228 IGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSG----TA 283

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               F+C V++R+  +      +   D + V       GVA GQ    Y  D +   VLG
Sbjct: 284 PSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPDGDEVLG 343

Query: 380 GGIISGSKR 388
              I+G+ R
Sbjct: 344 SATIAGTSR 352


>gi|21283300|ref|NP_646388.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486454|ref|YP_043675.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207658|ref|ZP_06924093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911740|ref|ZP_07129183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24638304|sp|Q8NW84|MNMA_STAAW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56749706|sp|Q6G8U8|MNMA_STAAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21204740|dbj|BAB95436.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244897|emb|CAG43358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887675|gb|EFH26573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885986|gb|EFK81188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 372

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K 
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKI 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G
Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           D ++                GF+C  K R  Q    VFV+R ND  + V F +    +  
Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGG  I
Sbjct: 341 GQAVVFYQGDV----CLGGATI 358


>gi|78186206|ref|YP_374249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium luteolum DSM 273]
 gi|123583498|sp|Q3B625|MNMA_PELLD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78166108|gb|ABB23206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium luteolum DSM 273]
          Length = 367

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 200/376 (53%), Gaps = 27/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V+V +SGGVDSSV A +L R+GY+V+G+ L++      S    +      +  + R
Sbjct: 4   KKKKVIVGLSGGVDSSVAACMLVREGYEVLGLHLKVLQEGDGS----TVLEPSPMTISSR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +  ++  +  +   RFRN V+  F   Y A  TP PC+ CN+T+K+  LL    QLGA
Sbjct: 60  --EEFHIPVFTLNLAARFRNEVMDYFKEEYLAARTPNPCMVCNKTIKWRGLLEGAAQLGA 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY R+      DG+ R  +   +D ++DQSYFL+   Q++L     PLG + K 
Sbjct: 118 DMVATGHYARTAFI---DGRHR--LFAGLDRKKDQSYFLWMLAQEELSRTILPLGGLTKP 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
            VRDLAR  GL  A+K +SQ+ICFV    Y   ++    G+      G+I+  +GQ++G 
Sbjct: 173 EVRDLARSFGLTAAEKKESQEICFVPDDDYGSYLESAVPGLHRRVEGGEILDPSGQVIGH 232

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQRRGLG A GEPL+V  +D   + V  GP+ +L    + +  +NW+G   
Sbjct: 233 HKGYPFYTIGQRRGLGTATGEPLYVTAIDPIGNLVHTGPKSALFSTSVEVSHLNWIGI-- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTS 370
             D      +   KIR      P  +     G       + F++ +  +  GQA VFY  
Sbjct: 291 --DPPFAPMEATAKIRYRDHASPCTIIPLGPGPTGVTARIMFKEPKSALTPGQAAVFYRG 348

Query: 371 DSNEARVLGGGIISGS 386
           +     VLGGGII G+
Sbjct: 349 E----EVLGGGIIEGA 360


>gi|227503892|ref|ZP_03933941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium striatum ATCC 6940]
 gi|227199515|gb|EEI79563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium striatum ATCC 6940]
          Length = 355

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 198/371 (53%), Gaps = 28/371 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA     G+DV+GV L L+   + ++ K   CC+ +D  DARR+CD + +
Sbjct: 1   MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ E+F+  VI  F  SYA GETP PC+ CN  +KF  LL     LG D +ATGH
Sbjct: 61  PFYVWDFSEQFKEEVIGDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y      + D G  R    R  D  +DQSY L   + ++L    FP+GD  K  +R+ A 
Sbjct: 121 YAT----LDDAGYMR----RSKDENKDQSYVLGVISAEELEHCYFPIGDTPKPQIREEAA 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTI 264
             G   A K DS DICF+  G   +    + + I L  G IV   GQ L +H+G  NYTI
Sbjct: 173 RHGFSTAKKPDSYDICFIPDG---NTQAFLGSRIGLRPGMIVDQEGQELKQHDGAWNYTI 229

Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           GQR+GL +    A G P +V  +D  S  V VG RE L V  I    + +L         
Sbjct: 230 GQRKGLDIKEPTADGRPRYVTDIDAASGTVTVGSREDLAVSTIQADRLKYL------HPA 283

Query: 321 VDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR- 376
           +DG  +C V++R+    VP   +V R+ D + ++ ++   GVA GQA V Y    +E   
Sbjct: 284 MDGELECEVQVRAHGSVVPCKAYVDRDGDKMTLELKEPLSGVARGQAAVLYLPSPDELGD 343

Query: 377 -VLGGGIISGS 386
            VLG G I G+
Sbjct: 344 IVLGSGTICGT 354


>gi|87301094|ref|ZP_01083935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 5701]
 gi|87284062|gb|EAQ76015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 5701]
          Length = 376

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/381 (37%), Positives = 200/381 (52%), Gaps = 34/381 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CCA + + DA 
Sbjct: 5   PGEHRVAVGLSGGVDSSLTAALLVAAGWQVEGLTLWLMSG------KGACCA-EGLVDAA 57

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136
            +C+ + V H+V D  ERFR  ++      Y  G TPLPC  CNR VKF+ +L     +L
Sbjct: 58  GLCEQLGVPHHVVDSRERFREQIVEFLVQGYEGGVTPLPCSRCNREVKFTPMLEWAEAEL 117

Query: 137 GADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G   +ATGHY R RL   D G R  R  + R +D+ +DQSYFL+   Q  L  L FPLG+
Sbjct: 118 GISRIATGHYARVRL--ADAGARAGRHQLLRGLDVHKDQSYFLYDLPQAVLARLVFPLGE 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQIL 253
           + K   R  A  +GL  A K +SQD+C      +  +   ++A +   +G IV  +G ++
Sbjct: 176 LTKPDTRLEAEALGLRTARKPESQDLCLADH--HGSMKAFLDAYLPPRQGQIVLADGTVV 233

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR         +  INW+  
Sbjct: 234 GEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNRVVVAPRAEAARSGCVVGAINWISI 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-----------QRNDDGVYVDFEKSEVGVASG 362
              E       +  V++R    PV   +                   ++F + +  +  G
Sbjct: 294 PPPEAP----LELEVQVRYRSAPVAAQLIPLEPTAADAAAARPHRARLNFHEEQFSITPG 349

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA VFY  +     VLGGG+I
Sbjct: 350 QAAVFYAGEV----VLGGGLI 366


>gi|254820453|ref|ZP_05225454.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 358

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 203/377 (53%), Gaps = 28/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLALSSS-PGTLRSGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDEFVSSYARGETPNPCVVCNQKIKFSALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDHDKDQSYVLAVLSAEQLRHAAFPIGDTPKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R  A   GL +A+K DS DICF+  G   D    + + I +  G +V+ +G +L  H+
Sbjct: 171 QIRAEAARRGLAVAEKPDSHDICFIPSG---DTRAFLGSRIGVRRGAVVNADGTVLAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+A     G P +V  +D  ++ V VG    LEV  +  R       
Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDAETATVRVGDVAELEVRELTGRAP----- 282

Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +F   V      +C V++R+  +      +     + V       GVA GQ  V Y  D
Sbjct: 283 -VFTSGVTPSGPIECAVQVRAHGETADAVAELVGGELVVRLRVPLRGVAPGQTLVLYRPD 341

Query: 372 SNEARVLGGGIISGSKR 388
            +   V+G  +I+ + R
Sbjct: 342 PDGDEVIGSAVIAATSR 358


>gi|325675868|ref|ZP_08155552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus equi ATCC 33707]
 gi|325553839|gb|EGD23517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus equi ATCC 33707]
          Length = 372

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 201/385 (52%), Gaps = 37/385 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DA+R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F  SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      +DG+ RR     +D ++DQSY L   T  QL    FP+GD  KE
Sbjct: 120 DAVATGHYARL-----EDGELRRA----VDADKDQSYVLAVLTADQLSRAMFPVGDTPKE 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGR 255
            +R+ A   GL +A+K DS DICF+  G    +      I  G  ++ D     G++L +
Sbjct: 171 QIREEAAARGLAVANKPDSHDICFIPSGDTRAFLGARIGIRPGAVVDAD----TGEVLAQ 226

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G+  +TIGQR+GLGV    A G+P +V  ++  +  V VG    L+V  I      W 
Sbjct: 227 HEGVHGFTIGQRKGLGVQGPAADGQPRYVTAIEPETGTVRVGSAARLDVWTITAERAIWT 286

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----------NDDGVYVDFEKSEVGVAS 361
                E  +    +C V++R+         +            D G+ V   +   GVA 
Sbjct: 287 SGQAPEGPI----ECIVQVRAHGGTARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAK 342

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQA V Y  D +   V+G G I+G+
Sbjct: 343 GQAVVLYRPDEDGDVVIGSGTIAGT 367


>gi|110638005|ref|YP_678212.1| tRNA-specific 2-thiouridylase MnmA [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280686|gb|ABG58872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 358

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 203/370 (54%), Gaps = 18/370 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGG+DSSV A +L   GY+VIG+T++   Y +   SK++  CC+   + DAR +  ++ 
Sbjct: 1   MSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDARNIAVSLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
             HY+ D  E F + VI  F   Y  G TP PCV CN  +K+  LL    ++  D +ATG
Sbjct: 61  FPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKMDCDFIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY + R         R ++ + +D  +DQSY L+  +QQ L    FPLG + K  +R +A
Sbjct: 121 HYAQVR-----SENNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLHKTDIRAMA 175

Query: 205 REMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGII 260
            E G +D+ +KS+S +ICFV    Y   +KR N G+  E   G+ V  +G ++G+H G  
Sbjct: 176 AERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTVVGKHEGYP 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+ +G P+FV  + K ++RV++G  E L  + +++ +   L    +E+  
Sbjct: 236 FYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQ---LIMSKYENLK 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +   K+R + D     +++  D + V F +    +A GQA VFY  +     V+GG
Sbjct: 293 GIQKQSITKVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND----VIGG 348

Query: 381 GIISGSKRSD 390
           G I  S + D
Sbjct: 349 GWIKSSFKQD 358


>gi|163840418|ref|YP_001624823.1| tRNA-specific 2-thiouridylase MnmA [Renibacterium salmoninarum ATCC
           33209]
 gi|189040507|sp|A9WMS3|MNMA_RENSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|162953894|gb|ABY23409.1| tRNA methyl transferase [Renibacterium salmoninarum ATCC 33209]
          Length = 378

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 203/380 (53%), Gaps = 25/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DA +
Sbjct: 1   MKVLAAMSGGVDSAVAAARTVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSTDAWK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + + +YV+D+ ERF+  V+  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACEKLGIPYYVWDFSERFKEDVVDDFIAEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY R    V  D      + R  D  +DQSY L   T +QL    FPL D + K
Sbjct: 120 DAVCTGHYAR----VAQDEDGNYELHRASDWAKDQSYVLGVLTHEQLKHSMFPLSDAQTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
             VR  A   GL +A K DS DICF+  G     + ++I+      G+I+  +G  +G H
Sbjct: 176 AEVRAEADRRGLSVAKKPDSHDICFISDGDTRGWLAEKID---MTPGEILDQSGAKVGTH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQRRGL +    A G+P FV+ +    + V+VGP + L ++ I   +I+W G
Sbjct: 233 EGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENTVVVGPEQMLAMNEIRGIKISWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDG---VYVDFEKSEVGVASGQACVF 367
           + + E      F C  ++R+  DPVP   FV  +DDG   + V+      GVA GQ  V 
Sbjct: 293 EPIAEVGAGTEFDCMAQVRAHGDPVPARAFVTTDDDGAPLLVVNLIDPLRGVAPGQTVVL 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y       RVLG   I  ++
Sbjct: 353 YQG----TRVLGQATIDTAR 368


>gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1]
 gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Anoxybacillus flavithermus WK1]
          Length = 371

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 198/367 (53%), Gaps = 23/367 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D  RVC+
Sbjct: 9   RVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYEDVVRVCN 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L     LGAD L
Sbjct: 66  QIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMALGADYL 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DG+ +  + R +D  +DQ+YFL    Q QL  + FP+G+++K  VR
Sbjct: 126 ATGHYARVAY---RDGEYQ--LLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+E GL  A K DS  ICF+ +  +   +   N   A  G++  L+G++ G H+G++ 
Sbjct: 181 EIAKEAGLATAGKKDSTGICFIGERNFKQFLS--NYLPAQPGEMQTLDGEVKGTHDGLMY 238

Query: 262 YTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDGLFE 317
           YTIGQR GLG+   GEP FVV   L  N   V  G   E L    I    +NW+ D    
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSDRKPN 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +     C  K R  Q  VPV V+  D+    V F +    V  GQA VFY    N  +
Sbjct: 299 EPIA----CTAKFRYRQPDVPVTVEMIDETTARVSFSQRVRAVTPGQAVVFY----NGEQ 350

Query: 377 VLGGGII 383
            LGGG I
Sbjct: 351 CLGGGTI 357


>gi|229543733|ref|ZP_04432793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coagulans 36D1]
 gi|229328153|gb|EEN93828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coagulans 36D1]
          Length = 371

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 210/391 (53%), Gaps = 26/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MQKAPKDTRVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R       DG+ +  M R +D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 LNLGADYLATGHYARV---THQDGEYK--MLRGVDGNKDQTYFLNQLGQYQLSRVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E GL  A+K DS  ICF+ +  + + +       A +G +  L+G+++
Sbjct: 173 DLEKPRVREIAKEAGLATANKKDSTGICFIGERNFKEFLSHYLP--AQKGLMKTLDGKVM 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLREI--N 309
           G H G++ YTIGQR GLG+   GEP F V  D K +   +        ++  Y+  +  N
Sbjct: 231 GEHEGLMYYTIGQRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKAN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+      +     F+C  K R  Q    V VQ   +D V V +++    V  GQA VFY
Sbjct: 291 WVSGKKPPEV----FRCTAKFRYRQPDQKVTVQLLGNDEVKVIYDEPVRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
               N    LGG  I    ++   EE L+ V
Sbjct: 347 ----NGEECLGGATIDKIYKN---EEQLMYV 370


>gi|225621511|ref|YP_002722770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira hyodysenteriae WA1]
 gi|225216332|gb|ACN85066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira hyodysenteriae WA1]
          Length = 352

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 201/369 (54%), Gaps = 27/369 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78
           ++ V MS GVDS+  A LLK  G DV GVT+ L+N  + +   GSC +      V +  +
Sbjct: 3   KIAVGMSAGVDSTTTAKLLKEQGNDVFGVTMLLWNGDERAPLSGSCYSPYQKNIVEECEK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I + +Y FD  E F+  VI     SY  G TP PC+ CN  +KF  L     + G 
Sbjct: 63  YAKAIGIDYYAFDISEMFQKKVIDYVTESYKKGFTPNPCIMCNSQIKFMALFEAIEKQGL 122

Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D  ATGHY   +    D+  +R ++ R  +L +DQSYFL+  TQ QL  + FP+ +  
Sbjct: 123 EFDKFATGHYAGVKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIMFPMHENT 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
           KE  R++ARE  LD+A+KS+SQD    +  + FD  K        EG I++++  +ILG 
Sbjct: 180 KEDTRNIAREYNLDVAEKSESQDFFAGEYHRLFDEDK--------EGSIINIDTNEILGH 231

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI +YT+GQR+GLG+A  EPLF+V LD  ++ V VG +    V+ + + ++NW+ +  
Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFIVALDSETNTVYVGNKNHTFVNEVKIYDVNWIAEPK 291

Query: 316 FEDAVVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            ++     F+  VK RS+    +   +  +++ + + F +    +A GQ+CV Y +D   
Sbjct: 292 QKE-----FEALVKTRSAHKGTMAAVIPIDENTINIKFHEPTGIIAKGQSCVCYDNDI-- 344

Query: 375 ARVLGGGII 383
              L GGI+
Sbjct: 345 --TLCGGIV 351


>gi|123969022|ref|YP_001009880.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           AS9601]
 gi|205816921|sp|A2BSL2|MNMA_PROMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123199132|gb|ABM70773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. AS9601]
          Length = 385

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 210/377 (55%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAISKKDFTHI 138

Query: 142 ATGHYIR---SRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R   S      D K    +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARINKSSYATTLDCKNLVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  +   I+  I   EG+IVH+NG++L
Sbjct: 199 MKKEDTRREALRLGLRTAQKPESQDLCLVEH--YGSMQIFIDKHIEPKEGEIVHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+HNGI ++T+GQR+GLG+A  EPL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GKHNGIQHFTVGQRKGLGIAWPEPLYVKSLDRLKNIVYVADKSDLFNKEAIISKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVD----FEKSEVGVASGQACVF 367
              E  +    +   +IR   +PV   +   +N D         FE+S+  V  GQA VF
Sbjct: 317 EEPEQEI----EVQAQIRYRSNPVKGTLIPLKNLDNTTTTFKLIFEESQSSVTPGQAAVF 372

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +     +LGGG+IS
Sbjct: 373 YKGEI----LLGGGLIS 385


>gi|325103525|ref|YP_004273179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter saltans DSM 12145]
 gi|324972373|gb|ADY51357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter saltans DSM 12145]
          Length = 362

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 20/372 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++   Y S  A+ ++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGANSKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D    F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RSLAVGYGFPHYILDIRNEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R    D+G  R ++ +  D  +DQSY L+  +Q+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRQQ--DNG--RYVISKGRDENKDQSYVLWGVSQENLARTKFPLGSFT 178

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQ 251
           K  +R +A +MG  D+A KS+S +ICFV    Y   +K     + A +A  GD V ++G 
Sbjct: 179 KAEIRQMAFDMGQEDLAKKSESYEICFVPDNDYRSFLKHRVPELEADVA-GGDFVLVDGT 237

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
            +G+H G   YTIGQR+GLG+A+G+P+FV  +   S+ V++G    L+     +R +N +
Sbjct: 238 KVGKHQGYPFYTIGQRKGLGIALGKPMFVTQILPESNTVVLGEEADLQRREATVRNLNLI 297

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  ++ +  +   KIR         + +  D + V+F  S  G+A GQ+ VFY  +
Sbjct: 298 KYA----SINEPLEAITKIRYKDPGTLSHIHQEGDIMKVNFHHSVTGIAPGQSAVFYEGN 353

Query: 372 SNEARVLGGGII 383
                +LGGG +
Sbjct: 354 D----LLGGGFL 361


>gi|321312277|ref|YP_004204564.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5]
 gi|291485158|dbj|BAI86233.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320018551|gb|ADV93537.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5]
          Length = 371

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 205/375 (54%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R    V   G++ R M R +D  +DQ+YFL   T+  L  + FP+G
Sbjct: 118 LSLGADYLATGHYAR----VDRSGEKVR-MLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +   +    C  K R  Q+   V V+   +G   V F++    V  GQA VFY
Sbjct: 291 WVRSDIMKGEEI---SCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGEE----CLGGGTI 358


>gi|169829330|ref|YP_001699488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus sphaericus C3-41]
 gi|205816875|sp|B1HUL3|MNMA_LYSSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168993818|gb|ACA41358.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus sphaericus C3-41]
          Length = 374

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 18/371 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++P  +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  D
Sbjct: 5   RDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYDD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L     
Sbjct: 62  VIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY  +R+    DG+ +  M R +D  +DQ+YFL   +Q+QL  + FP+GD+
Sbjct: 122 LGADYLATGHY--ARIDRSGDGEVK--MLRGVDNNKDQTYFLNQLSQEQLAHVMFPIGDI 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR +A E GL  A K DS  ICF+ +  + + + +     A  G++  ++G ++G+
Sbjct: 178 EKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQFLP--AQPGNMETMDGVVMGK 235

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H+G++ YT+GQR GLG+   GEP FV+  D   + ++VG  +  +   +Y   ++ +   
Sbjct: 236 HDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVG--QGFDNEHLYSTSLSAVKMN 293

Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                 + G F C  K R  Q   PV V+   DG  ++ F +    +  GQA V Y  + 
Sbjct: 294 YTSTKKLPGKFSCTAKFRYRQTDTPVEVELLADGRTHITFAEPVRAITPGQAVVLYDGE- 352

Query: 373 NEARVLGGGII 383
                +GGG I
Sbjct: 353 ---ECIGGGTI 360


>gi|229828822|ref|ZP_04454891.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM
           14600]
 gi|229791985|gb|EEP28099.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM
           14600]
          Length = 361

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 194/365 (53%), Gaps = 16/365 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRVC 80
           VVV MSGGVDSSV A LLK +GY VIGVT+Q++    A   +  G CC    V DARRV 
Sbjct: 7   VVVGMSGGVDSSVAAYLLKEEGYRVIGVTMQIWQDESACSLEEHGGCCGLSAVEDARRVA 66

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I + HYV +++  F++ VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD 
Sbjct: 67  RMIGIPHYVMNFKAEFQDRVIDYFTDEYLRGRTPNPCIACNRYVKWESLLERSLAIGADY 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    V      R  +   +   +DQ+Y L+  TQ+QL     P+GD  K  +
Sbjct: 127 IATGHYAR----VEHLANGRYAVRNSVTAAKDQTYALYNLTQEQLAHTLMPVGDYDKPRI 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-IALEGDIVHLNGQILGRHNGI 259
           R++A   GL +A K+DS+DICF+    Y   ++R     I   G+ V  +G ++GRH GI
Sbjct: 183 REIALAAGLPVAHKADSEDICFIPDHDYASFLEREAPDRIPEPGNFVLEDGSVIGRHQGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG++   PLFV  +   S+ V++  +E +    +    +N +    F+  
Sbjct: 243 SHYTIGQRKGLGISWDSPLFVKEIRPGSNEVVLTSKEGVFTDHLTFENVNHMAVEAFQ-- 300

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              G +   KIR S       ++    + + + F +    V  GQA V Y  +     + 
Sbjct: 301 --PGEEYLAKIRYSDPGCMCRIEAVGQERIRLAFSRKVRAVTPGQALVLYQGEF----IA 354

Query: 379 GGGII 383
           GGG I
Sbjct: 355 GGGTI 359


>gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. HGF5]
 gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. HGF5]
          Length = 389

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 210/385 (54%), Gaps = 25/385 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + + K   + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A  
Sbjct: 19  ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 75

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D RRVC+ +++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+
Sbjct: 76  DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 135

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    + +DG+ R  + R +D  +DQ+YFL A +Q+QL    FP
Sbjct: 136 KAMDLGADYVATGHYARV---IEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLSKAMFP 190

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           +G + K  VR LA E GL  A K DS  +CF+ +  + + + +     A  GD+V +  G
Sbjct: 191 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 248

Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYL 305
           ++ GRH+G++ YT+GQR+     G   GEP FV    L  N   V+ G   SL    +  
Sbjct: 249 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 308

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
             +NW+     +DA+  D + C  K R  Q    V +   +DG V+V F K +  +  GQ
Sbjct: 309 SGMNWIAG---QDAMPKDAYACTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQ 365

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           A VFY  D      LGGG I  + +
Sbjct: 366 AVVFYQGDD----CLGGGTIETADK 386


>gi|290969182|ref|ZP_06560707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780688|gb|EFD93291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 362

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/366 (37%), Positives = 197/366 (53%), Gaps = 14/366 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARRV 79
           V VAMSGGVDSSV A LL+R G DVIG+TL+L+ +    + ++   +CC+   V DA+ V
Sbjct: 5   VAVAMSGGVDSSVTAGLLQRRGLDVIGITLRLWEAPPTCEVTENIHACCSLSAVEDAKAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HY  D+ + F   VI  F  +Y  G+TP PC+ CN+ +KF  L    +Q GAD
Sbjct: 65  ADVLGIPHYTLDFRDVFSQDVITYFIQAYKDGKTPNPCIACNKWIKFGLLWQRAQQFGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R    V D  ++   + R  D  +DQSY L+   Q  L  + FP+ ++ K  
Sbjct: 125 FLATGHYAR---IVYDARRKVYSLLRGADRRKDQSYVLYQLQQDLLPHILFPMAELTKTE 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R LA+E  L + +K +SQDICF+    Y   ++       + G+ V   G++LG H GI
Sbjct: 182 TRRLAKEWHLPVFNKPESQDICFIPDNDYKKFLRSRAPQHFIPGNFVDKEGRVLGTHAGI 241

Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             YT+GQRR       G P +V  LD   +RVIVG    L    + ++E+ W+     E+
Sbjct: 242 PCYTVGQRRGLHLGGPGGPYYVTALDVPHNRVIVGGAADLFRTAVEVQEVTWV-----EE 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F    KIR +    P  V  +D   + V+F   +  V +GQA V Y + + E RV
Sbjct: 297 TPETDFSALGKIRYAAKEAPCRVHVSDGARMRVEFVTPQRAVTAGQALVLYDAATGE-RV 355

Query: 378 LGGGII 383
           LGGGII
Sbjct: 356 LGGGII 361


>gi|314936263|ref|ZP_07843610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313654882|gb|EFS18627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 370

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 207/380 (54%), Gaps = 42/380 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++K+
Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG+ +G H+G
Sbjct: 177 DVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++LE + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280

Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           D ++             +GF+C  K R  Q    VFVQ+ D+  + V F++    +  GQ
Sbjct: 281 DYLIASDASFVNPVDLENGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQ 340

Query: 364 ACVFYTSDSNEARVLGGGII 383
           A VFY    N    LGG  I
Sbjct: 341 AVVFY----NGEVCLGGATI 356


>gi|78185088|ref|YP_377523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9902]
 gi|123580788|sp|Q3AV73|MNMA_SYNS9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78169382|gb|ABB26479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9902]
          Length = 389

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 207/387 (53%), Gaps = 39/387 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CCA + +
Sbjct: 18  LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACCA-EGL 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132
            DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CNR+VKF  +L   
Sbjct: 71  VDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCNRSVKFGPMLEWA 130

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +ATGHY R R + GD G+ +  + R +D  +DQSYFL+   Q+ L  + FPL
Sbjct: 131 AQERNLPRIATGHYARIR-HGGDCGRHQ--LLRGLDSRKDQSYFLYDLPQEALGRIVFPL 187

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEGDIVHL 248
           G++ K   R  A   GL  A+K +SQD+C          + D           +G+IV  
Sbjct: 188 GELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLPPR-----QGEIVLK 242

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR     H   +  I
Sbjct: 243 DGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRAEAGRHEAVVGAI 302

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDG------VYVDFEKSEV 357
           NW+      D  +      V++R    PV     P+    +D         ++ F++ + 
Sbjct: 303 NWVSI----DPPLQAMNLEVQVRYRSAPVTARLTPLPATDDDHQRQRPHRCHLVFDEDQF 358

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            +A GQA VFY+ D+    VLGGG++ 
Sbjct: 359 SIAPGQAAVFYSDDT----VLGGGLLQ 381


>gi|116671273|ref|YP_832206.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter sp. FB24]
 gi|166234843|sp|A0JYI6|MNMA_ARTS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116611382|gb|ABK04106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter sp. FB24]
          Length = 379

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 201/384 (52%), Gaps = 29/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  +++    DG     + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVCTGHY--AKVITDADGNPE--LHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
             VR  A   GL +A+K DS DICF+  G   D    +   I +  GDIV   G  +G H
Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFIPDG---DTAGWLAEKIEMTTGDIVDEAGTKVGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQRRGL +    A G+P FV+ +    ++V+VGP   L +  I   +++W G
Sbjct: 233 PGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDG-----VYVDFEKSEVGVASGQ 363
             + E A  D F C  ++R+  DPVP   +     +DDG     + V       GVA GQ
Sbjct: 293 LPIAEVATGDEFDCHAQVRAHGDPVPATARMERLTDDDGAERTNLVVTLATPLRGVAPGQ 352

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
             V Y      +RVLG   I  ++
Sbjct: 353 TVVLYQG----SRVLGQATIDTAR 372


>gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus tetradius ATCC 35098]
 gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus tetradius ATCC 35098]
          Length = 367

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 207/373 (55%), Gaps = 24/373 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++    +   G C A  D  D
Sbjct: 2   KDKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  VC+ I++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + 
Sbjct: 59  AVAVCNQIDIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R      D      +M R +D  +DQ+YFL   +Q+Q+ D+ FP+G++
Sbjct: 119 LGADFVATGHYARV-----DRSADETVMLRGVDSNKDQTYFLSQLSQEQIKDVLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR++A +  L  ADK DS  ICF+ +  + + +   N   A EG+IV   G ILGR
Sbjct: 174 EKSQVREIAHKYKLATADKKDSTGICFIGERDFNEFLS--NYLPAQEGNIVDTEGNILGR 231

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311
           H G++ +TIGQRRGLG+   GE  FV   D   + +IV   ++   L  +++Y  E + +
Sbjct: 232 HEGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFSTI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            D      + + F C  K R  Q  +   V+   DG + V +++++  V  GQA VFY  
Sbjct: 292 SD----KEIPEEFSCTAKFRYRQADINAHVKVLGDGKIEVTYDRTK-AVTPGQAAVFYLG 346

Query: 371 DSNEARVLGGGII 383
           D      LG  II
Sbjct: 347 DV----CLGSAII 355


>gi|152976810|ref|YP_001376327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189036217|sp|A7GT74|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 371

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL    Q+QL    FPLG
Sbjct: 118 MALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLGQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P FVV   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFVV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           +NW+ D   E      FKC  K R  Q+   V VQ  D+  + +  ++    +  GQA V
Sbjct: 289 VNWVSDRAKEKE----FKCTAKFRYRQEDNGVTVQIVDENTIRILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363


>gi|221310688|ref|ZP_03592535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315011|ref|ZP_03596816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319932|ref|ZP_03601226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324213|ref|ZP_03605507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|255767628|ref|NP_390627.3| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|254763446|sp|O35020|MNMA_BACSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225185256|emb|CAB14691.3| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 371

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R    V   G + R M R +D  +DQ+YFL   T+  L  + FP+G
Sbjct: 118 LSLGADYLATGHYAR----VDRSGGKVR-MLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +   +    C  K R  Q+   V V+   +G   V F++    V  GQA VFY
Sbjct: 291 WVRSDIMKGEEI---SCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGEE----CLGGGTI 358


>gi|327439665|dbj|BAK16030.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Solibacillus silvestris StLB046]
          Length = 372

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 201/372 (54%), Gaps = 18/372 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++P  +RVV+ MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 5   RDPSQIRVVIGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDEFGVCTATEDYDD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L     
Sbjct: 62  VIAVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHALA 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY  +R+   ++G +   M R +D  +DQ+YFL   T +QL  + FP+G +
Sbjct: 122 LGADYLATGHY--ARVAHDENGVK---MLRGIDNNKDQTYFLNQLTSEQLEKVMFPIGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A E GL  A K DS  ICF+ +  + + + +     A  G++   +G++ G 
Sbjct: 177 PKPEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGNMETFDGEVKGT 234

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H+G++ YT+GQR GLG+   GEP FVV  D   + + VG  +      +Y   +  +   
Sbjct: 235 HDGLMYYTLGQRHGLGIGGDGEPWFVVGKDLTRNVLYVG--QGFHHDALYSDALTAVKMS 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSN 373
              +A    F C  K R  Q+  PV V   +DG  Y++F +    +  GQA V Y  +  
Sbjct: 293 FTGEAKTGTFNCTAKFRYRQEDSPVTVTMREDGTAYIEFAEPVRAITPGQAVVLYDGE-- 350

Query: 374 EARVLGGGIISG 385
               LGGG I G
Sbjct: 351 --ECLGGGTIDG 360


>gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 367

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 213/375 (56%), Gaps = 21/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++   +++RVVV MSGGVDSSV A LLK++GY VIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNTEKQNIRVVVGMSGGVDSSVAAYLLKQEGYQVIGIFMKNWDD---TDEFGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ +++ +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIRVCNQLDIPYYAVNFEKEYWDKVFTYFLNEYRAGRTPNPDVMCNKEIKFKAFLDHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R R    D+G     + R +D  +DQ+YFL A ++ QL  + FP+G
Sbjct: 119 MSLGADYVATGHYARVRH--SDNGVE---LLRGIDENKDQTYFLNALSEDQLKHVLFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  + + + +     A  G++  L+G++ 
Sbjct: 174 EIEKPRVREIAKEAHLATATKKDSTGICFIGERNFKEFLSQYLP--AQRGEMQTLDGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H+G++ YT+GQR+GLG+   GEP FV+  D + + ++VG      +L    +   ++N
Sbjct: 232 GYHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLDKNILLVGQGYHHPALYSSGLIAEDVN 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   L +      F C  K R  Q    V V   +DG V V F++ E  +  GQ+ VFY
Sbjct: 292 WINQHLIKGK--KEFHCTAKFRYRQKDQGVTVSIMNDGQVKVIFDEQERAITPGQSVVFY 349

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG+I
Sbjct: 350 DGEV----CLGGGVI 360


>gi|124003360|ref|ZP_01688210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microscilla marina ATCC 23134]
 gi|123991458|gb|EAY30889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microscilla marina ATCC 23134]
          Length = 386

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+V+G+T++   Y S   SK++  CC+   + DA
Sbjct: 3   KKGRVLVAMSGGIDSSLAAVLLHEQGYEVVGITMKTWDYASSGGSKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   H + D    F + VI  F + Y  G TP PCV CN  +K+  LL    +L
Sbjct: 63  RNIAVDLGFPHLILDIRNEFGDYVIDHFTNEYLDGRTPNPCVLCNTHIKWDALLRRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R   G     R ++ + +D  +DQSY L+  +QQ L     PLG + 
Sbjct: 123 DCEHIATGHYANIREENG-----RYVISKGIDEGKDQSYALWGVSQQSLSRTILPLGQLY 177

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++A E G +++ +KS+S +ICFV    Y   +KR    +  +   GD +  +G +
Sbjct: 178 KSQIREMAIERGFVELVNKSESYEICFVPDNDYRGFLKRRVPELEEKVDGGDFILEDGTV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A+G P++V  +DKN++RV++G  + LE + +    +N L 
Sbjct: 238 VGKHKGYPFYTIGQRKGLGIALGYPVYVTGIDKNNNRVVLGTVKDLEKNGMI---VNQLT 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              + D      +   K+R + +  P  +++ +D  + V F +    +A GQA VFY  D
Sbjct: 295 LQKYADMKGKPLETVTKVRYNHEGAPARIEQVSDHEIKVWFHEEVSAIAPGQAAVFYEGD 354

Query: 372 SNEARVLGGGIISGSKRSDAVEESLL 397
                ++GGG I  S +    EE ++
Sbjct: 355 D----MIGGGWIKSSFKWQENEEGII 376


>gi|116747617|ref|YP_844304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobacter fumaroxidans MPOB]
 gi|205828997|sp|A0LEL7|MNMA_SYNFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116696681|gb|ABK15869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 362

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 196/373 (52%), Gaps = 21/373 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +RV VAMSGGVDS   A LLK  G DV GV ++         R G  CAG  + +   
Sbjct: 3   RSLRVAVAMSGGVDSLRAAILLKEQGNDVFGVHMR----HVPPSRTGRWCAGAMIREKEA 58

Query: 79  -VCDT---INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +C+          V D  + F + VI PF  +Y  G+TP PC+ CN  VKF  L+   R
Sbjct: 59  FLCELGLRFGFPIAVVDLRDAFESHVIEPFMEAYLLGQTPNPCIFCNPAVKFGFLMEKAR 118

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+  ATGHY  +R+       RR  + R  DL +DQSYFL+  +Q QL    FPLG 
Sbjct: 119 ALGAERFATGHY--ARVSPPGPTSRRFRLLRGSDLSKDQSYFLYGLSQDQLASTLFPLGS 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIA-LEGDIVHLNGQI 252
            +K  V   A ++G+      +SQ+ICFV  GKY + + +R++   A  EG I+ L G+ 
Sbjct: 177 TRKRDVSAWAGQLGIASLFPGESQEICFVPAGKYHEFLTERLDTLHAPAEGPILDLEGRE 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRH GI  YTIGQRRGLG+A   PL+VV L+  ++ V VG    L+  R+ +  +NW+ 
Sbjct: 237 LGRHKGIFAYTIGQRRGLGIASSAPLYVVGLEPAANAVRVGRVGDLDRDRLEVGRVNWVS 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  V    +C V+IR+   P    V    +    V FE  +  V  GQ+ VFY  D
Sbjct: 297 IPAPNVPV----RCRVRIRNQHAPAAAVVTPVGERSASVRFEAPQRAVTPGQSAVFYDGD 352

Query: 372 SNEARVLGGGIIS 384
                VLGGG IS
Sbjct: 353 V----VLGGGTIS 361


>gi|296333160|ref|ZP_06875613.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675334|ref|YP_003867006.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149358|gb|EFG90254.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413578|gb|ADM38697.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 371

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 22/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R    V   G + R M R +D  +DQ+YFL   T+  L  + FP+G
Sbjct: 118 LSLGADYLATGHYAR----VDRSGGKVR-MLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEADLATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V   L+KN   V  G    L    +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +   +    C  K R  Q+   V V+   +G   V F++    V  GQA VFY
Sbjct: 291 WVRSDIMKGQEI---ACTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 348 DGEE----CLGGGTI 358


>gi|15827913|ref|NP_302176.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae TN]
 gi|221230390|ref|YP_002503806.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae Br4923]
 gi|3122976|sp|O33099|MNMA_MYCLE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811455|sp|B8ZS29|MNMA_MYCLB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2414533|emb|CAB16422.1| hypothetical protein MLCB637.07 [Mycobacterium leprae]
 gi|13093466|emb|CAC30660.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium leprae]
 gi|219933497|emb|CAR71802.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium leprae Br4923]
          Length = 358

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 199/370 (53%), Gaps = 22/370 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +DV DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STVSGTLRTGSRGCCSKEDVSDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L      LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQEDVIDNFVSAYARGETPNPCVQCNQRIKFSALSVRALMLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D  +DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRGKDQSYVLAVLTAQQLRHAAFPIGDTLKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL +ADK DS  ICF+  G     +     GI   G +V  +G +L  H+G
Sbjct: 171 QVRAEAARRGLLVADKPDSHGICFIPSGNTRAFLSEC-IGIR-RGSVVDADGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +T+GQR+GLG+      G P +V  +D +++ V VG    L VH +  R   +    
Sbjct: 229 VHGFTVGQRKGLGIVGPGPNGRPRYVTAIDADTATVYVGDAADLGVHTLIGRAPVFTAGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A +   +C V+IR+  +     V+   D ++V   +   GVA GQ  V Y  D + 
Sbjct: 289 ----APLGPVQCVVQIRAHGETAVAVVELIGDELFVRLCEPLRGVARGQTLVLYRLDPDG 344

Query: 375 ARVLGGGIIS 384
             VLG   I+
Sbjct: 345 DEVLGSATIA 354


>gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-44]
 gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-44]
          Length = 376

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 206/379 (54%), Gaps = 19/379 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R   Y+  DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVA-YI--DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E+    
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 313 DGLFED-AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            G   + A   GFKC  K R  Q+   V VQ  DD  + +  ++    +  GQA VFY  
Sbjct: 294 VGWVSNRAKEKGFKCTAKFRYRQEDNKVTVQIVDDNTIRILCDEPIRAITPGQAVVFYDG 353

Query: 371 DSNEARVLGGGIISGSKRS 389
           D      LGG  I    RS
Sbjct: 354 D----ECLGGATIDEVYRS 368


>gi|70726299|ref|YP_253213.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus haemolyticus
           JCSC1435]
 gi|123660380|sp|Q4L6W8|MNMA_STAHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68447023|dbj|BAE04607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 370

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 205/380 (53%), Gaps = 42/380 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAHVLKDQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  DDG     M R +D  +DQ+YFL   +QQQL  + FP+GD+ K+
Sbjct: 121 DYVATGHYARIRRH--DDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIDKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG  +G H+G
Sbjct: 177 EVRKIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGEMRTLNGDKMGMHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++LE + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280

Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
           D ++             +GF+C  K R  Q    VFVQR + + + V F++    +  GQ
Sbjct: 281 DYLIASDFSFVNPVDLDNGFECTAKFRYRQKDTKVFVQRESQNALRVTFDEPVRAITPGQ 340

Query: 364 ACVFYTSDSNEARVLGGGII 383
           A VFY    +E   LGG  I
Sbjct: 341 AVVFY----DEEVCLGGATI 356


>gi|116072337|ref|ZP_01469604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. BL107]
 gi|116064859|gb|EAU70618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. BL107]
          Length = 389

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 210/399 (52%), Gaps = 39/399 (9%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            ++EA       L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +     
Sbjct: 6   TMTEAGEAALTRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG---- 61

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             KG+CCA + + DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CN
Sbjct: 62  --KGACCA-EGLVDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCN 118

Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           R+VKF  +L   +Q      +ATGHY R R + GD G+ +  + R +D  +DQSYFL+  
Sbjct: 119 RSVKFGPMLEWAKQERHLPRIATGHYARIR-HGGDRGRHQ--LLRGLDSRKDQSYFLYDL 175

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRIN 236
            Q+ L  + FPLG++ K   R  A   GL  A+K +SQD+C          + D      
Sbjct: 176 PQEALGRIVFPLGELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLPPR 235

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
                +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR 
Sbjct: 236 -----QGEIVLKDGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRA 290

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDG---- 347
                   +  INW+      D  +      V++R    PV     P+    +D      
Sbjct: 291 EAGRQEAVVGAINWVSI----DPPLQAMNVDVQVRYRSAPVTARLTPLPATDDDHQRQRP 346

Query: 348 --VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              ++ F++++  +A GQA VFY  D+    VLGGG++ 
Sbjct: 347 HRCHLVFDENQFSIAPGQAAVFYADDT----VLGGGLLQ 381


>gi|289550612|ref|YP_003471516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658107|ref|ZP_07910979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis M23590]
 gi|289180144|gb|ADC87389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496436|gb|EFU84759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis M23590]
          Length = 370

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 200/380 (52%), Gaps = 42/380 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++EE + N V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEEEYWNKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R + Y  DDG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K+
Sbjct: 121 DYVATGHYARLKRY--DDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ +  +   + +     A  GD+  L+G+ +G H+G
Sbjct: 177 EVRRIAEEQGLATAKKKDSTGICFIGERNFKSFLSQYLPAQA--GDMRTLDGKKMGVHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV   KN             V  +   E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV--GKNL------------VDNVLYVEQGFHHDALYS 280

Query: 318 DAVVD-------------GFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           D ++              GF C  K R  Q    V V+R DD  + V F++    +  GQ
Sbjct: 281 DYLIASDYSFVNPVDLERGFNCTAKFRYRQQDTEVSVERVDDHSIKVTFKEPVRAITPGQ 340

Query: 364 ACVFYTSDSNEARVLGGGII 383
           + VFY  +      LGG  I
Sbjct: 341 SVVFYDGEI----CLGGATI 356


>gi|183981704|ref|YP_001849995.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU
           [Mycobacterium marinum M]
 gi|183175030|gb|ACC40140.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU
           [Mycobacterium marinum M]
          Length = 357

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 195/373 (52%), Gaps = 24/373 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGALRTGSRGCCSKEDASDARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ ERF+  VI  F SSYA GETP PC+ CN+ +KFS L +    LG DV+ TG
Sbjct: 60  IPFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGFDVVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R       +G+ RR     +D ++DQSY L   T +QL    FP+GD  K  +R+ A
Sbjct: 120 HYARL-----SEGRLRRA----VDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKPQIREEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIINYT 263
              GL +ADK DS DICF+  G     + +RI       G +V   G +L  H+G+  +T
Sbjct: 171 SRRGLAVADKPDSHDICFIPSGNTQTFLGERIG---VRRGTVVDAAGAVLATHDGVHGFT 227

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR+GLG+      G P +V  +D  +  V VG    L+VH +  R   +        A
Sbjct: 228 IGQRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAG----TA 283

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +C V++R+  +      +   D + V       GVA GQ  V Y  D +   VLG
Sbjct: 284 PTGPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPDGDEVLG 343

Query: 380 GGIISGSKRSDAV 392
              I+ +     V
Sbjct: 344 SATITATSACSPV 356


>gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
           [Oceanobacillus iheyensis HTE831]
 gi|30173412|sp|Q8CXC7|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Oceanobacillus iheyensis HTE831]
          Length = 371

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KN KD RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  D
Sbjct: 2   KNNKDTRVVVGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDFDD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RVC+ + + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L     
Sbjct: 59  VVRVCNQLEIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHALA 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY + R     D   R  M R  D  +DQ+YFL   ++  L  + FPLG +
Sbjct: 119 LGADYLATGHYAQVRR----DKNGRVEMLRGNDENKDQTYFLNQLSEDVLDKVMFPLGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A+E  L  A+K DS  ICF+ +  + + +       A  G++  L+G + G 
Sbjct: 175 PKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLP--AQPGEMQTLDGIVKGS 232

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           H+G++ YT+GQR+GLG+   G+P FVV  +   + + VG     + L  + +   +INW+
Sbjct: 233 HDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGYENDYLYSNALVATDINWI 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 D + D F C  K R  Q    V V  ++++ VYV F++ +  +  GQA VFY  
Sbjct: 293 Q----PDKISDTFNCTAKFRYRQQDSEVNVTIKSENEVYVAFKEDQRAITPGQAVVFYDG 348

Query: 371 DSNEARVLGGGIISGSKRSD 390
           +      LGGG I    ++D
Sbjct: 349 EV----CLGGGTIDTIIKND 364


>gi|167970222|ref|ZP_02552499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis H37Ra]
          Length = 367

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 205/375 (54%), Gaps = 26/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV + L+ +   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMALWTA-PGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            +R  A   GL +A+K DS DICF+  G  K F + +RI       G +V  +G +L  H
Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASH 226

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +  
Sbjct: 227 DGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            G      VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D 
Sbjct: 287 -GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDP 342

Query: 373 NEARVLGGGIISGSK 387
               VLG   I+G+ 
Sbjct: 343 AGDEVLGSATIAGAS 357


>gi|119357892|ref|YP_912536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeobacteroides DSM 266]
 gi|205813544|sp|A1BI85|MNMA_CHLPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119355241|gb|ABL66112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 357

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCD 81
           VVV +SGGVDS+V A LL + GY V+G+ +++ ++  +      S     D  D +    
Sbjct: 5   VVVGISGGVDSAVAACLLMKQGYRVLGLNIRILDTPDEHPSLAPSPLLISDHADYQFPVF 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++N+S        RF   VI  F + Y AG+TP PC+ CN+ +K+  LL   R LGA+ +
Sbjct: 65  SLNLS-------ARFSQEVIRYFQADYLAGKTPNPCMVCNKKIKWHGLLEGARLLGAERI 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+      DG+ R  + + +D ++DQSYFL+  +Q  L    FPLG++ KE VR
Sbjct: 118 ATGHYART---ASLDGRVR--LYKGLDPQKDQSYFLWMLSQNDLNKTCFPLGELAKEKVR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258
           +LAR  G+  A+K +SQ+ICFV    Y   ++    G+  +   GDIV  NG++LG+H G
Sbjct: 173 ELARTFGVRAAEKKESQEICFVPHDDYCRYLELAVPGLKEKVAGGDIVDENGKVLGKHRG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG++  EPL+V  LD+ ++ V  G + SL+   + +  +NW+ +   ++
Sbjct: 233 YPFYTIGQRRGLGLSSTEPLYVTALDQENNCVHTGNKSSLDTRSLTVSGLNWINNKSLDE 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V    + F KIR      P  +    DG   + F  ++  VA GQA VFY    ++  V
Sbjct: 293 PV----EAFGKIRYRDRETPCTIAPLPDGQATITFHTAKHAVAPGQAAVFY----HDEEV 344

Query: 378 LGGGIISGSKR 388
           LGGG IS   R
Sbjct: 345 LGGGFISAVNR 355


>gi|118444647|ref|YP_878354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium novyi NT]
 gi|205813888|sp|A0Q152|MNMA_CLONN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118135103|gb|ABK62147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium novyi NT]
          Length = 350

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 205/365 (56%), Gaps = 27/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V +SGGVDSSV A LLK  GYD+IG+T+++      S+            DA++V D
Sbjct: 7   KVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSCDLDVSE------------DAKKVAD 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YV D  E F+N VI  FA  Y  G TP PC  CN+ +KF  L+   ++LGAD +
Sbjct: 55  KLGIPYYVIDLTEEFKNKVIDNFAEEYLQGRTPNPCAVCNKHIKFGALIQKAKELGADYI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   + G     R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K+ +R
Sbjct: 115 ATGHYARIEEHNG-----RFLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKDQIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
           ++A+++GL++ +K +S DICF+    +   +K +     ++ G+ V  +G+ILG H G+I
Sbjct: 170 EIAKKIGLEVHNKKESMDICFIPDNDHGKYIKGLECRDRIKPGNFVDKDGKILGTHKGLI 229

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+++G+P FV+ ++   + V++G  E +    +  +E+N++      D++
Sbjct: 230 YYTIGQRKGLGLSLGKPGFVIDINPERNEVVIGDEEEIFNEGLIAKEVNFIP----FDSL 285

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   KIR S       +   DDG + V F+  +  +  GQ  VFY  D     ++G
Sbjct: 286 ENPMEVEAKIRYSTTKSKATIIPYDDGKIKVMFKDKQRAITKGQRVVFYIQD----MLVG 341

Query: 380 GGIIS 384
           GG I 
Sbjct: 342 GGTIE 346


>gi|84498222|ref|ZP_00997019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janibacter sp. HTCC2649]
 gi|84381722|gb|EAP97605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janibacter sp. HTCC2649]
          Length = 374

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 210/383 (54%), Gaps = 26/383 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77
           MRVV AMSGGVDS+V AA +   G++V+GV L L  SR A+  + S   CC  +D  DAR
Sbjct: 1   MRVVAAMSGGVDSAVAAARMLDAGHEVVGVHLAL--SRSAATLRESARGCCTIEDAGDAR 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D + +  YV+D  ERF+  V+  F + Y AG TP PC+ CN ++KF+ LL     LG
Sbjct: 59  RVADRLGIPFYVWDMAERFQRDVMDDFVAEYQAGRTPNPCLRCNESIKFAALLDRAVALG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY +    V  +G   R + R +D ++DQSY L     +QL    FPLGD  K
Sbjct: 119 FDAVATGHYAQIVERVDAEGVTHRELHRAVDPKKDQSYVLGVLDDEQLSRAFFPLGDTAK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL-NGQILGR 255
             +R+ A   G  IA K DS DICF+  G     + K++       G+IV   +G+++G 
Sbjct: 179 PQIREEAAARGFSIAKKPDSYDICFIPDGDTRGFLTKKLG---EQPGEIVDAESGEVVGS 235

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   +T+GQRRGLG+       EP +VV +D  ++RV++G ++ L V  I      W 
Sbjct: 236 HEGAYGFTVGQRRGLGLDRSSLDAEPRYVVGVDAPTNRVLIGTQDLLGVDVIVADHARWC 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFY 368
           G     DA V   +   ++R+  + VP      + + + V+V  ++   GVA GQ+ V Y
Sbjct: 296 G-----DAPVGEVRVGAQVRAHGEEVPALAWVDESDPELVHVRLDERIRGVAPGQSVVLY 350

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
               ++ RV+G   I+ + R+ A
Sbjct: 351 ----DDTRVVGSATIAATSRAGA 369


>gi|300871209|ref|YP_003786082.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira pilosicoli 95/1000]
 gi|300688910|gb|ADK31581.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira pilosicoli 95/1000]
          Length = 353

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/374 (36%), Positives = 207/374 (55%), Gaps = 36/374 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA---GQDVYDARR 78
           ++ V MS GVDS+  A LLK  G +V GVT+ L++  + +   GSC      + V + ++
Sbjct: 3   KIAVGMSAGVDSTTTAKLLKEQGNEVFGVTMLLWDGDERAPLAGSCYGPYQNKVVEECKK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I + +Y F+  E F+  VI     SY  G TP PC+ CNR +KF  L     + G 
Sbjct: 63  YAAQIGIDYYAFNVSELFQKKVIDYVKDSYKKGLTPNPCIMCNREIKFMALFDAIEKSGL 122

Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D  ATGHY   R    D+ ++R I+ R  +  +DQSYFL+  TQ+QL  + FP+ +M 
Sbjct: 123 TFDKFATGHYAGVRY---DEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFPMYEMT 179

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           KE  R LARE  L D+A+K+DSQD    +  + FD          LEG+IVH+   +ILG
Sbjct: 180 KEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFDE--------DLEGNIVHIETNEILG 231

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +HNGI +YT+GQR+GLG+A  EPLF++ LD +++ V VG +    + ++ + +INW+ + 
Sbjct: 232 KHNGIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTVYVGNKNHTIIDKVTIYDINWIVNK 291

Query: 315 LFEDAVVDGFKCFVKIRSSQ-----DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
             ++     F   VK RS+      + VP+    +D+ + + F +    VA GQ+CV Y 
Sbjct: 292 REKE-----FTALVKTRSAHKGTMANVVPI----DDNRIDIHFLEPTGIVAKGQSCVCYD 342

Query: 370 SDSNEARVLGGGII 383
            +      L GGI+
Sbjct: 343 GEI----TLCGGIV 352


>gi|258593690|emb|CBE70031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [NC10
           bacterium 'Dutch sediment']
          Length = 357

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/359 (40%), Positives = 203/359 (56%), Gaps = 16/359 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AALL   GY+V+G++L+L    +   S+R   CC+ +D  DAR V   + 
Sbjct: 1   MSGGVDSAVAAALLIEQGYEVVGISLKLLPEGAGNGSERADRCCSVKDAEDARLVAAQLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + +Y+ +YE +F+  VI  F  +Y  G TP PCV CN  +KF  LL     LGA  LATG
Sbjct: 61  IPYYILNYESQFQREVIREFTEAYLGGLTPNPCVRCNELIKFGSLLQQALGLGAKRLATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R      +D + R ++ R +D ERDQSYFL++ TQ+QL  + FP+G M K+ VR+ A
Sbjct: 121 HYARVER---EDMRGRYLLRRGVDEERDQSYFLYSLTQEQLAGICFPVGHMTKDQVRERA 177

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYT 263
              GL IA K+DSQD+CFV  G  +    +   G  L  G I    G+ILG+H G+  YT
Sbjct: 178 AAYGLRIAAKADSQDLCFV--GHDYRTFLQERCGDRLRPGPITDRTGRILGQHEGVALYT 235

Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323
           +GQR GL +A G P +V+ LD  ++ V+VG R+ L         +N +      D +   
Sbjct: 236 VGQRNGLRLASG-PFYVIRLDPQTNAVVVGRRDELLRREFVAERLNLVA----YDRLTAE 290

Query: 324 FKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
               VK+RS Q  +P   +   D  + V + +++   A GQA VFY  D+ E  +L GG
Sbjct: 291 RPVLVKVRSRQAAMPATILPLGDSRIRVRWHQAQPAAAPGQAAVFY--DAAEPDLLVGG 347


>gi|152990183|ref|YP_001355905.1| tRNA-specific 2-thiouridylase MnmA [Nitratiruptor sp. SB155-2]
 gi|205816887|sp|A6Q239|MNMA_NITSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151422044|dbj|BAF69548.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Nitratiruptor sp. SB155-2]
          Length = 339

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 209/365 (57%), Gaps = 33/365 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VVAMSGGVDSS  A LL+  GY+VIGV ++ +   +  ++        ++ + ++V  
Sbjct: 4   KIVVAMSGGVDSSYTANLLQSRGYEVIGVYMKFHPREEYHQK--------NIANIQKVAK 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + ++V D  + F+  V  PF  SY AG TP PC  CNR +KF++L+    +LG D +
Sbjct: 56  HLGIEYHVLDRTKEFQERVYQPFVDSYVAGLTPNPCAMCNRVMKFTELIEFADELGVDNV 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DG   + +    D  +DQSYFLF   ++ L  + FPLGD  KE+V+
Sbjct: 116 ATGHYAKT------DG---QFIYEATDKSKDQSYFLFNLKKEFLPRIIFPLGDWYKENVK 166

Query: 202 DLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
             A ++ L   IA++ +S +ICFV+   Y DV+K  +  + + G++V  +G+++G H G 
Sbjct: 167 KEAMKILLLKSIAEQKESSEICFVETN-YIDVLKE-HTEVEMPGEVVDTHGKVIGEHKGY 224

Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           ++YTIG+R+G  +    +P +V+ +  + +R++VG +E LE  +I LR +N   D     
Sbjct: 225 MHYTIGKRKGFRLFKAHQPHYVLDIIPHKNRIVVGTKEQLEKRQIVLRGLNMFLDQ---- 280

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                F C++KIR     VP  V+ +     V  ++   GVA GQA VFY    +E +VL
Sbjct: 281 ---KEFDCYIKIRYRTHKVPCHVKIDGSVASVTLKEPVYGVAKGQAGVFY----DEEKVL 333

Query: 379 GGGII 383
           GGG I
Sbjct: 334 GGGWI 338


>gi|298373676|ref|ZP_06983665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274728|gb|EFI16280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 361

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 19/368 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79
           +V+++MSGG+DS+V A LL R GYD++GVT + ++S  +   +R+  CC    + +ARR+
Sbjct: 6   KVLLSMSGGIDSTVAAILLMRQGYDLVGVTYRTWDSVSQGCFEREKGCCTINAIMEARRM 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +   H+  D  ++FR++VI  F   Y AG TP PCV CN  +K+ +++ +   +  D
Sbjct: 66  AAEMGFPHHFLDIRQKFRDSVIKNFIDEYLAGRTPNPCVVCNAEIKWGEVVKLADSMDCD 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R     G     +  + + +D  +DQ+YFL+   Q  L    FPLG++ K  
Sbjct: 126 YIATGHYARIESLNG-----KYYLKKGVDTNKDQTYFLWRLPQSVLRRTIFPLGELTKPE 180

Query: 200 VRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAG---IALEGDIVHLNGQILGR 255
           VR +A + G + ++ K++SQ+ICFV    Y + ++  ++    I  +G+ V + G ILGR
Sbjct: 181 VRQIAFDAGYEKLSKKAESQEICFVPDNDYREFLRAESSAYNEIGTDGNFVDVAGNILGR 240

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G  NYT+GQR+GLG+A+G P+FV  +    + V++  R+ L    +   + N++    
Sbjct: 241 HKGYPNYTVGQRKGLGIALGRPMFVSQIRPERNEVVLADRDDLYTKTLTATDCNFVD--- 297

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
             D + DG +   +IR         +    + V V F+K    VA+GQ+ VFY  +    
Sbjct: 298 -RDTIHDGLEVDARIRYKSPATSAKIVLEGNKVRVSFDKEVWAVAAGQSVVFYKDN---- 352

Query: 376 RVLGGGII 383
            ++GGG+I
Sbjct: 353 LIIGGGVI 360


>gi|228475220|ref|ZP_04059946.1| tRNA-methyltransferase [Staphylococcus hominis SK119]
 gi|228270831|gb|EEK12233.1| tRNA-methyltransferase [Staphylococcus hominis SK119]
          Length = 370

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 206/380 (54%), Gaps = 42/380 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +R++  +D      M R +D  +DQ+YFL   +Q+QL  + FP+GD++K+
Sbjct: 121 DYVATGHY--ARIHRHEDSHVE--MLRGIDNNKDQTYFLNQLSQKQLSKVMFPIGDLEKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG+ +G H+G
Sbjct: 177 EVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++LE + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280

Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           D ++             +GF+C  K R  Q    VFVQ+ D+  + V F++    +  GQ
Sbjct: 281 DYLIASDASFVNPVDLENGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQ 340

Query: 364 ACVFYTSDSNEARVLGGGII 383
           A VFY    N    LGG  I
Sbjct: 341 AVVFY----NGEVCLGGATI 356


>gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 371

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 206/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V++  ++    +  GQA V
Sbjct: 289 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVHILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363


>gi|319441115|ref|ZP_07990271.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium variabile DSM
           44702]
          Length = 364

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 201/367 (54%), Gaps = 24/367 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA    +G++VIGV L L  S +A  R GS  CC+ +D  DARRVCD++ 
Sbjct: 1   MSGGVDSSVAAARALAEGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARRVCDSLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF+  VI  F  SY  GETP PC+ CN  +KF  LL  +  LG D + TG
Sbjct: 60  IPFYVWDFSDRFKADVIDNFVESYEIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY  ++L+ G       ++ R +D  +DQSY L   T +QL    FP+GD  K ++R  A
Sbjct: 120 HY--AQLHDG-------VLRRGIDDNKDQSYVLGVLTDEQLAHCMFPVGDTVKPAIRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263
           +++G+ +A K DS DICF+  G+       +   I +   IV  + G+ L  H+G+  +T
Sbjct: 171 KDLGMGVASKPDSHDICFIPDGR---TQAFLGTKIGMRPGIVQSVEGETLAEHDGVYGFT 227

Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR+GLG+    A G+P +V  ++ ++  V VG +  L +  I    +  L      + 
Sbjct: 228 IGQRKGLGLPGPAADGQPRYVTDINASTGTVTVGRKRDLRIGHITADRLKRLDPAKHGET 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +C V++R+    VP       D V ++  +   GVA GQA V Y  D+    ++G
Sbjct: 288 ----LECEVQVRAHGGVVPATATLTSDAVELELHEPLQGVARGQAAVVYLPDAEGDILIG 343

Query: 380 GGIISGS 386
            G IS +
Sbjct: 344 SGTISAT 350


>gi|33240814|ref|NP_875756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|81664194|sp|Q7VAT9|MNMA_PROMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33238343|gb|AAQ00409.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 406

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 209/389 (53%), Gaps = 40/389 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  + V +SGGVDSS+ AALL   G++V G+TL L +       KGSCC    + DA  +
Sbjct: 36  DHSIAVGLSGGVDSSLTAALLVEAGWNVEGITLWLMSG------KGSCCT-DGLVDAAGI 88

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           C+ + + H+V D  E F+  +I      Y  G TP PC  CNR VKFS +L    Q LG 
Sbjct: 89  CEQLGIPHHVIDARETFQREIIESLVKGYQEGMTPSPCSKCNRFVKFSPILEWAEQNLGL 148

Query: 139 DVLATGHYIRSRLY--------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +ATGHY R +            ++  RR  + R +D  +DQSYFL+  +Q+ L  + F
Sbjct: 149 KRIATGHYARIKHLQEPIKISSAKENQIRRHQLLRGLDQNKDQSYFLYDLSQEILEKVIF 208

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN 249
           PLG++KK   R  A  + L  A+K +SQD+C  +   +  +   ++  I+   G+I+  N
Sbjct: 209 PLGELKKADTRKEASRIELRTAEKPESQDLCLAEH--HGSMKAFLDEYISPRNGEILLSN 266

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           GQ+LG+H+GI ++TIGQR+GLG+A  EPL V+ +  +++RVIV PR         +  IN
Sbjct: 267 GQLLGQHDGIEHFTIGQRKGLGIAWKEPLHVIEIQSSTNRVIVAPRSEASRDNCTVGSIN 326

Query: 310 WLG-DGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRND---DGVY---VDFEKSEV 357
           W+  +   +  +V+     V++R    PV     P+   + D   D  Y   + F+  + 
Sbjct: 327 WVSIEPPSKKTIVE-----VQLRYRSKPVLATLTPIKPLKKDIENDRPYRCNLQFQSEQF 381

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            +  GQA VFY  +     +LGGGII G+
Sbjct: 382 SITPGQAAVFYEGEI----LLGGGIIEGN 406


>gi|228993134|ref|ZP_04153056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pseudomycoides DSM 12442]
 gi|228999183|ref|ZP_04158765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock3-17]
 gi|229006731|ref|ZP_04164365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock1-4]
 gi|228754592|gb|EEM04003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock1-4]
 gi|228760800|gb|EEM09764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock3-17]
 gi|228766593|gb|EEM15234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pseudomycoides DSM 12442]
          Length = 376

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/383 (37%), Positives = 206/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R   Y+  DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARV-AYI--DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           I W+ +   E      FKC  K R  Q+   V VQ  DD  V +  ++    +  GQA V
Sbjct: 294 IGWVSNRAKEKE----FKCTAKFRYRQEDNKVTVQIVDDNTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|318042099|ref|ZP_07974055.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0101]
          Length = 394

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 209/410 (50%), Gaps = 66/410 (16%)

Query: 6   ATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           AT   +L L++    P + RV V +SGGVDSS+ AALL   G+ V G+TL L +      
Sbjct: 17  ATPAGALALERLQAWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSG----- 71

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            KG+CCA + + DA  +C+ + V H+V D+ E F+  ++      Y  G TPLPC  CNR
Sbjct: 72  -KGACCA-EGLVDAAGICEQLGVEHHVVDFREHFKEQIVDFLVQGYGDGITPLPCSRCNR 129

Query: 123 TVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            VKF  +L   ++  G   +ATGHY R       D  R +++ R +D ++DQSYFL+   
Sbjct: 130 EVKFGPMLHWAQEERGISRIATGHYARVCHGEQSDNGRHQLL-RGLDRQKDQSYFLYDLP 188

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINA 237
           Q+ L  L FPLG++ K   R  A   GL  A+K +SQD+C          + D       
Sbjct: 189 QEALGRLVFPLGELTKADTRVEAARHGLRTAEKPESQDLCLADHHGSMRAFLDTYLPPR- 247

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
               +G+IV  +GQ++G+H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR  
Sbjct: 248 ----QGEIVLEDGQVVGQHDGIQHFTIGQRKGLGVAWSEPLHVVRLDGVMNRVVVAPRR- 302

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVY------- 349
                          D    DAVV G   +V I   Q+P+ V VQ R   G         
Sbjct: 303 ---------------DAARSDAVV-GAVNWVSIAPPQEPIEVEVQVRYRSGAVAARLSPL 346

Query: 350 ----------------VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                           ++F + +  +  GQA VFY  D    RVLGGG+I
Sbjct: 347 DATDADAAAGRPHRCRLEFAEEQFSITPGQAAVFYAGD----RVLGGGLI 392


>gi|78779771|ref|YP_397883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9312]
 gi|123768944|sp|Q319J8|MNMA_PROM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78713270|gb|ABB50447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 385

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 210/377 (55%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G+DV G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVESGWDVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + ++H + D  E F   VI      Y  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTEGYEKGFTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138

Query: 142 ATGHYIR---SRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R   S      D K    +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYAETLDYKSFVFKDFLLLRGTDENKDQSYFLYSLSQEVLSRLVFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+I+H+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIIHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNGI ++TIGQR+GLG+A  EPL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHNGIHHFTIGQRKGLGIAWPEPLYVKSLDRVKNIVYVADKSDLFNREAIISKVNWVS- 315

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDG----VYVDFEKSEVGVASGQACVF 367
              E+   +  +   +IR    PV   +   +N D       + FE+S+  V  GQA VF
Sbjct: 316 --IEEPKQE-IEVEAQIRYRSHPVKGTLIPMKNSDNPANTFKLIFEESQSSVTPGQAAVF 372

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +     +LGGG+I+
Sbjct: 373 YKGEI----LLGGGLIN 385


>gi|157413852|ref|YP_001484718.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9215]
 gi|205816917|sp|A8G6A1|MNMA_PROM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157388427|gb|ABV51132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 385

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 28/375 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEKEVIKKTTESYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138

Query: 142 ATGHY--IRSRLYVGD-DGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY  I+   YV   D K    +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYVEKLDCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+I+H+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNGI ++T+GQR+GLG+A  +PL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHNGIQHFTVGQRKGLGIAWPKPLYVKSLDRGKNIVYVADKSDLFNKEAIISKVNWV-- 314

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD----FEKSEVGVASGQACVFYT 369
            + E       +  ++ RS      +   +N D    +    FE+++  +  GQA VFY 
Sbjct: 315 SIVEPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKNFKLIFEENQSSITPGQAAVFYK 374

Query: 370 SDSNEARVLGGGIIS 384
            D     +LGGG+I+
Sbjct: 375 GDI----LLGGGLIN 385


>gi|110596963|ref|ZP_01385253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium ferrooxidans DSM 13031]
 gi|110341650|gb|EAT60110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium ferrooxidans DSM 13031]
          Length = 361

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 204/368 (55%), Gaps = 25/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVC 80
           +VVV +SGGVDS+  A LLK+ GY V G+ +++ +S + S   + S     D  D +   
Sbjct: 6   KVVVGISGGVDSATTACLLKKAGYAVTGLNIRVLDSLEDSPSLQPSPLVISDHPDFQIPV 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T+N+S        +FR+ VI  F + Y  G TP PC+ CN+ +K+  L    + L AD 
Sbjct: 66  LTLNLSR-------KFRDDVITYFHNDYLGGHTPNPCMVCNKKIKWFGLFEGLKLLEADF 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGH+  +      DG+ R  + + +D E+DQSYFL+  +Q  L     PLG+M K  V
Sbjct: 119 IATGHFASTSF---SDGRYR--LYKGVDPEKDQSYFLWMLSQSDLAKTLLPLGEMVKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHN 257
           R LARE G+  A+K +SQ+ICFV Q  Y   ++    G+A +   G+IV   G ++G+H 
Sbjct: 174 RRLAREFGVRAAEKKESQEICFVPQDDYCSYLEGAIPGLAEKVSGGEIVDEAGTVIGKHR 233

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQRRGLGVA   PL+V  +D   +R+ VG + +LE  ++    +NW+G     
Sbjct: 234 GYPFYTIGQRRGLGVAAKVPLYVTEIDPEHNRIHVGQKSALETRKLVASGLNWIGI---- 289

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D V        KIR      P  ++   D+ V V F+  + GV++GQA VFY     E+ 
Sbjct: 290 DGVNAPVTALGKIRYRDKETPCTIEPLADNEVAVAFDAPKSGVSTGQAAVFY----RESE 345

Query: 377 VLGGGIIS 384
           VLGGG I+
Sbjct: 346 VLGGGFIT 353


>gi|227501721|ref|ZP_03931770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49725]
 gi|227077746|gb|EEI15709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49725]
          Length = 355

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 194/367 (52%), Gaps = 26/367 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA     G+DV+GV L L+   + ++ K   CC+ +D  DARR+CD + +
Sbjct: 1   MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ E F+  VI  F  SY+ GETP PC+ CN  +KF  LL     LG D +ATGH
Sbjct: 61  PFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y      + DDG  R    R  D  +DQSY L   + ++L    FP+GD  K  +R+ A 
Sbjct: 121 YAT----LDDDGYMR----RSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQIREEAA 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTI 264
             G   A K DS DICF+  G   +  + + + I L  G IV   G  L  H+G  NYTI
Sbjct: 173 AHGFSTAKKPDSYDICFIPDG---NTQQFLGSRIGLRPGMIVDQEGTELKEHDGAWNYTI 229

Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           GQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G+  D  
Sbjct: 230 GQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPGMDGD-- 287

Query: 321 VDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR-- 376
              F+C V++R+    VP    V R  D + ++ ++   GVA GQA V Y    ++    
Sbjct: 288 ---FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSPDDLGDI 344

Query: 377 VLGGGII 383
           V+G G I
Sbjct: 345 VIGSGTI 351


>gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 376

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  QD   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQDDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|299535696|ref|ZP_07049017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus fusiformis ZC1]
 gi|298728896|gb|EFI69450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus fusiformis ZC1]
          Length = 374

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 205/371 (55%), Gaps = 18/371 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++P  +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  D
Sbjct: 5   RDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYDD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L     
Sbjct: 62  VIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMN 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY  +R+    DG+ R  M R +D  +DQ+YFL   +Q+QL  + FP+GD+
Sbjct: 122 LGADYLATGHY--ARIDRNGDGEVR--MLRGVDDNKDQTYFLNQLSQEQLAHVMFPIGDI 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR +A E GL  A K DS  ICF+ +  + + + +     A  G +  ++G ++G+
Sbjct: 178 EKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGKMETMDGVVMGQ 235

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H+G++ YT+GQR GLG+   GEP FV+  D   + ++VG  +  +    Y   +  +   
Sbjct: 236 HDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLARNVLLVG--QGFDNEYSYSTSLTAVKMN 293

Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                 + G F C  K R  Q   PV V+   DG  ++ F +    +  GQA V Y    
Sbjct: 294 YTSTKKLPGKFSCTAKFRYRQTDTPVEVEILPDGRAHITFAEPVRAITPGQAVVLY---- 349

Query: 373 NEARVLGGGII 383
           N    +GGG I
Sbjct: 350 NGEECMGGGTI 360


>gi|15610161|ref|NP_217540.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842587|ref|NP_337624.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           CDC1551]
 gi|31794202|ref|NP_856695.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis AF2122/97]
 gi|121638907|ref|YP_979131.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662876|ref|YP_001284399.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           H37Ra]
 gi|148824215|ref|YP_001288969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis F11]
 gi|215405014|ref|ZP_03417195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 02_1987]
 gi|215428470|ref|ZP_03426389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis T92]
 gi|215447296|ref|ZP_03434048.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis T85]
 gi|224991399|ref|YP_002646088.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797879|ref|YP_003030880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 1435]
 gi|254233657|ref|ZP_04926982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis C]
 gi|254365655|ref|ZP_04981700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254552097|ref|ZP_05142544.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188054|ref|ZP_05765528.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202161|ref|ZP_05769652.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis T46]
 gi|289444586|ref|ZP_06434330.1| tRNA methyl transferase [Mycobacterium tuberculosis T46]
 gi|289448700|ref|ZP_06438444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553185|ref|ZP_06442395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 605]
 gi|289746832|ref|ZP_06506210.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU
           [Mycobacterium tuberculosis 02_1987]
 gi|289751695|ref|ZP_06511073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis T92]
 gi|289759148|ref|ZP_06518526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis T85]
 gi|294993474|ref|ZP_06799165.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis 210]
 gi|297635653|ref|ZP_06953433.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732651|ref|ZP_06961769.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN
           R506]
 gi|306777328|ref|ZP_07415665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu001]
 gi|306781232|ref|ZP_07419569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu002]
 gi|306785873|ref|ZP_07424195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu003]
 gi|306790227|ref|ZP_07428549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu004]
 gi|306794722|ref|ZP_07433024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu005]
 gi|306798964|ref|ZP_07437266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu006]
 gi|306969100|ref|ZP_07481761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu009]
 gi|306973444|ref|ZP_07486105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu010]
 gi|307081154|ref|ZP_07490324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu011]
 gi|307085756|ref|ZP_07494869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu012]
 gi|313659983|ref|ZP_07816863.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039755|sp|P66977|MNMA_MYCBO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54042259|sp|P66976|MNMA_MYCTU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234858|sp|A1KN20|MNMA_MYCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235068|sp|A5U737|MNMA_MYCTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811454|sp|C1AGE1|MNMA_MYCBT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2791622|emb|CAA16109.1| PROBABLE tRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           TRMU [Mycobacterium tuberculosis H37Rv]
 gi|13882900|gb|AAK47438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis CDC1551]
 gi|31619797|emb|CAD96737.1| PROBABLE tRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           TRMU [Mycobacterium bovis AF2122/97]
 gi|121494555|emb|CAL73036.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599186|gb|EAY58290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis C]
 gi|134151168|gb|EBA43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148507028|gb|ABQ74837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis H37Ra]
 gi|148722742|gb|ABR07367.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU
           [Mycobacterium tuberculosis F11]
 gi|224774514|dbj|BAH27320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319382|gb|ACT23985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417505|gb|EFD14745.1| tRNA methyl transferase [Mycobacterium tuberculosis T46]
 gi|289421658|gb|EFD18859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis CPHL_A]
 gi|289437817|gb|EFD20310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 605]
 gi|289687360|gb|EFD54848.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU
           [Mycobacterium tuberculosis 02_1987]
 gi|289692282|gb|EFD59711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis T92]
 gi|289714712|gb|EFD78724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis T85]
 gi|308214222|gb|EFO73621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu001]
 gi|308325877|gb|EFP14728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu002]
 gi|308329399|gb|EFP18250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu003]
 gi|308333244|gb|EFP22095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu004]
 gi|308336898|gb|EFP25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu005]
 gi|308340714|gb|EFP29565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu006]
 gi|308353256|gb|EFP42107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu009]
 gi|308357089|gb|EFP45940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu010]
 gi|308361042|gb|EFP49893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu011]
 gi|308364679|gb|EFP53530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu012]
 gi|323718255|gb|EGB27433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902753|gb|EGE49686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis W-148]
 gi|328457656|gb|AEB03079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 4207]
          Length = 367

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 148/375 (39%), Positives = 205/375 (54%), Gaps = 26/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            +R  A   GL +A+K DS DICF+  G  K F + +RI       G +V  +G +L  H
Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASH 226

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +  
Sbjct: 227 DGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            G      VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D 
Sbjct: 287 -GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDP 342

Query: 373 NEARVLGGGIISGSK 387
               VLG   I+G+ 
Sbjct: 343 AGDEVLGSATIAGAS 357


>gi|189485341|ref|YP_001956282.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|205828982|sp|B1GZY9|MNMA_UNCTG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170287300|dbj|BAG13821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 360

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 208/375 (55%), Gaps = 30/375 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRK-GSCCAG---QDVY 74
           +M++++ +SGGVDS+V A LLK+ GY+V G T+ ++ N   A K K    C G   +++ 
Sbjct: 4   EMKILIGLSGGVDSAVAAYLLKKQGYEVTGTTMSIWDNFLPAPKTKVNDSCLGPENENIE 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A ++ D + +  YV D    ++  V+  F + Y  G TP PC+ CN  +KF  L +  +
Sbjct: 64  TAHKIADFLTIPLYVTDCSGEYKKVVLENFRNEYKEGRTPNPCIRCNAYIKFGILPAAVK 123

Query: 135 QLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + G   D  ATGHY        D       + +  DL +DQ+YFL+  TQ+ L +  FPL
Sbjct: 124 KTGLSFDKFATGHYANIGF---DSSTNMYKLYKAADLNKDQTYFLYRLTQKTLSETIFPL 180

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G   KE VR++A+++GL  A+K DSQD  C    G Y D+++      A  G+IV  NG+
Sbjct: 181 GIYTKEQVRNIAKKIGLPSAEKPDSQDFYC----GDYNDILQF----PANPGNIVDKNGR 232

Query: 252 ILGRHNGIINYTIGQRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +LG+HNGI NYTIG+R+GLG+  G  +PL+V+ +    + V +G +E L    +  ++++
Sbjct: 233 VLGKHNGIWNYTIGKRKGLGLLGGTKDPLYVINISAKQNMVTIGTKEDLYSSSLTAKKVS 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFY 368
           W      +  +    +   KIR    P   F + + D  V V+F + ++ V +GQ+ VFY
Sbjct: 293 WCSILPPKKTI----EATAKIRRQHKPEKAFIIPQEDSSVKVEFAQPQMSVTAGQSIVFY 348

Query: 369 TSDSNEARVLGGGII 383
             D+    VLGGG+I
Sbjct: 349 KDDT----VLGGGVI 359


>gi|302865761|ref|YP_003834398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|315502317|ref|YP_004081204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora sp. L5]
 gi|302568620|gb|ADL44822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|315408936|gb|ADU07053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora sp. L5]
          Length = 358

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 146/374 (39%), Positives = 202/374 (54%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  +RF + V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADVLGIPFYVWDMADRFHDDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +G DG    ++ R +D  +DQSY L   T+ QL    FPLGD  K 
Sbjct: 120 DAVVTGHHAR----LGADG----LLRRSVDAAKDQSYVLAVLTRAQLDRSIFPLGDSTKA 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRH 256
            VR  A   GL +ADK DS DICF+  G     + +R+       G +V  L G ++G H
Sbjct: 172 EVRAEAARRGLAVADKPDSHDICFIADGDTRGFLAERLGEA---PGQVVDALTGAVVGSH 228

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   YT+GQRRGL +      G P +V+ +   ++ V VGP E+LEV  +      W G
Sbjct: 229 SGAYQYTVGQRRGLHLDRPAPDGRPRYVLSITPTTNTVTVGPAEALEVSDVRATRPVWTG 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            G   D  V+   C V++R+  D VP  V+ + DG+     +   GVA+GQA V Y  D 
Sbjct: 289 -GPRPDGPVE---CEVQLRAHGDVVPAAVEVDADGLRASLRRPVRGVAAGQAIVAYRPDP 344

Query: 373 NEARVLGGGIISGS 386
               VLG   I+ +
Sbjct: 345 AGDVVLGSATITAA 358


>gi|229814917|ref|ZP_04445255.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM
           13280]
 gi|229809404|gb|EEP45168.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM
           13280]
          Length = 409

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 199/408 (48%), Gaps = 54/408 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VAMSGGVDSSV A LL + GYD +G T+ L+         G+C +G D  DA  +C 
Sbjct: 5   RVLVAMSGGVDSSVTAYLLTQQGYDCLGATMLLHGDAA----PGACGSGSDADDAAAICA 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +   H V D  E F   V+  F  +Y  G TP PC+DCNR +KF  LLS  R+   D +
Sbjct: 61  RLGFPHEVIDMRETFERHVVEKFVRTYETGRTPNPCIDCNRHLKFDALLSYAREHDCDFI 120

Query: 142 ATGHYIR-SRLYVGDDGKRRR---------IMCR------------PMDLERDQSYFLFA 179
           ATGHY R   L  G  G  RR         I  R             +D  +DQSY L++
Sbjct: 121 ATGHYGRIGTLAEGGGGSVRRGEEQEFVARITARTGASNAVHTLSCALDPSKDQSYVLYS 180

Query: 180 TTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
            TQ++L     PLG + KE  VR +ARE G + A K DSQ ICFV    +   +++ N  
Sbjct: 181 LTQERLARTLLPLGGLFKERDVRRIAREQGFENAGKRDSQGICFVPDNDFATYIEKRNGA 240

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298
              EGDIV+ +G +LGRH+G I YT+GQR+GLGVA   P++V  +D  ++ V +G    L
Sbjct: 241 PLPEGDIVNTSGHVLGRHHGAIRYTVGQRKGLGVACAHPVYVTGIDAVANTVTLGEVADL 300

Query: 299 EVHRIYLREINWLGDG-----LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY---- 349
               +   +  W         L ++A   G     KIR      P  ++R   G      
Sbjct: 301 MASGLVADDWIWSAPANVMEELLDEAGETGLPVSAKIRYRHPAQPARLRRATCGTTGSSA 360

Query: 350 --------------VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                         + F+  E G+A GQA V Y  D     VLGGG +
Sbjct: 361 GANAIAENAANAFELIFDSPERGIAPGQAVVAYAGDI----VLGGGTV 404


>gi|189502542|ref|YP_001958259.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|229470222|sp|B3ETH8|MNMA_AMOA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189497983|gb|ACE06530.1| hypothetical protein Aasi_1200 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 376

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 206/386 (53%), Gaps = 18/386 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+++G+T++ ++  S    K++  CC+   + DA
Sbjct: 2   KKGRVLVAMSGGIDSSITALLLHEQGYEIVGLTMKTWDYVSSGGRKKETGCCSLDSINDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V  ++   H + D  E F + VI  F S Y AG TP PCV CN  +K+  LL    +L
Sbjct: 62  RNVAVSLGFPHIILDIREEFGDYVISNFTSEYLAGRTPNPCVLCNTHIKWDALLRRADKL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R   G     R I+ R  DL +DQSY L+  +Q+ L     PLG   
Sbjct: 122 NCEYIATGHYANIRHENG-----RYIVSRGKDLNKDQSYALWGVSQESLSRTLLPLGVFT 176

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++A + G  ++  KS+S +ICF+    Y   +KR    +  +   G+ V  +G +
Sbjct: 177 KPEIREIASQRGFKELVTKSESYEICFIPDNDYRGFLKRRVDNLEEQVKGGEFVLEDGTV 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G   YT+GQR+GLG+ +G P++V  +  + +RV++G  + L    +Y+ ++N   
Sbjct: 237 VGHHEGYPFYTVGQRKGLGITLGYPVYVTEIQADKNRVVLGTFDELARDGMYVHKLNM-- 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            G + D          K+R +    P  ++++ D + V F K    +A GQA VFY  D 
Sbjct: 295 -GKYPDLQGRRLDSVTKVRYNDPGSPAVLEQDGDIMKVFFGKGVHAIAPGQAAVFYEGDD 353

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
               V+GGG I  S +  A ++   S
Sbjct: 354 ----VIGGGWIKASFKQPAFKKYNFS 375


>gi|157736745|ref|YP_001489428.1| tRNA-specific 2-thiouridylase MnmA [Arcobacter butzleri RM4018]
 gi|205810156|sp|A8ES35|MNMA1_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|157698599|gb|ABV66759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
          Length = 345

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 33/370 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N       K       ++     V  
Sbjct: 5   KVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDGYHEK-------NLGYIEDVAK 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ +Y+ D  ++F   V   F  SY  G TP PCV CNR +KF  +L   +Q GA  L
Sbjct: 58  FLNIKYYILDLADKFSKEVYDYFVDSYLTGTTPNPCVKCNRQIKFGAMLDFAKQHGASYL 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DGK         D  +DQSYFL    +  L  + FPL   KKE + 
Sbjct: 118 ATGHYAKT------DGK---FFYEADDKTKDQSYFLSQVDKDALKYMMFPLSTYKKEDIV 168

Query: 202 DLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
               ++ +    I +KS+SQ+ICFV+   Y DVVK+ +A I  EGD++  NG+++G+H G
Sbjct: 169 KFGAKLDVAYKKITEKSESQEICFVET-VYTDVVKK-HANIDQEGDVLDENGKVVGKHKG 226

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
             +YTIG+RRG  V    EP FV  L+   + ++VG +E+LEV+ +    +N   D    
Sbjct: 227 FAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVVGNNLNMFIDDT-- 284

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 F C VK+R      P  VQ  D+  Y+  ++   GVA GQ  VFY    +E +V
Sbjct: 285 -----KFSCNVKLRYRSVSTPCEVQIKDEKAYITLKEPVYGVAKGQLAVFY----HEEKV 335

Query: 378 LGGGIISGSK 387
           +G   I  +K
Sbjct: 336 IGSAWIESTK 345


>gi|52081229|ref|YP_080020.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC
           14580]
 gi|52786609|ref|YP_092438.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC
           14580]
 gi|319644804|ref|ZP_07999037.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2]
 gi|73919897|sp|Q65GR9|MNMA_BACLD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52004440|gb|AAU24382.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus licheniformis ATCC 14580]
 gi|52349111|gb|AAU41745.1| TrmU [Bacillus licheniformis ATCC 14580]
 gi|317392613|gb|EFV73407.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2]
          Length = 372

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 21/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  +VC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIKVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D    R  M R +D  +DQ+YFL   T++QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRTDGRVKMLRGLDENKDQTYFLNQLTEEQLSKVLFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A+E GL  A K DS  ICF+ +  +   + +     A  GD+  + G+  
Sbjct: 173 QLQKSRVREIAKEAGLATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMRTMEGEFK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV   L+KN   V  G    L    +I    ++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNILYVDQGFDNPLLFSDKITATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           ++  G+F     +   C  K R  Q    V V+    D   V F++    V  GQA VFY
Sbjct: 291 FVHKGVFGGE--EELACTAKFRYRQADHEVTVRMTGTDEAEVVFKEPVRAVTPGQAVVFY 348

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG I
Sbjct: 349 KGEE----CLGGGTI 359


>gi|126696814|ref|YP_001091700.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9301]
 gi|205816922|sp|A3PEC4|MNMA_PROM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126543857|gb|ABO18099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 385

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 210/377 (55%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLI------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAVNKKDFTHI 138

Query: 142 ATGHYIR---SRLYVGDDGKRRR----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R   S      D K  +    ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYAETLDCKSFKFKDFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+IVH+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIVHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNGI ++TIGQR+GLG+A  +PL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHNGIQHFTIGQRKGLGIAWPDPLYVKSLDRVKNIVYVADKSDLFNREAIITKVNWVS- 315

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVD----FEKSEVGVASGQACVF 367
              E+   +  +   +IR    PV   +   +N D         FE+S+  V  GQA VF
Sbjct: 316 --IEEPKQE-IEVEAQIRYRSHPVKGTLIPLKNFDNPTTTFKLIFEESQSSVTPGQAAVF 372

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +     +LGGG+IS
Sbjct: 373 YKGEI----LLGGGLIS 385


>gi|218899565|ref|YP_002447976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9842]
 gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9842]
          Length = 372

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 204/379 (53%), Gaps = 19/379 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E+    
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            G   + V +  FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA VFY  
Sbjct: 290 VGWVSNKVKETEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDG 349

Query: 371 DSNEARVLGGGIISGSKRS 389
           D      LGG  I    RS
Sbjct: 350 D----ECLGGATIDEVYRS 364


>gi|68536405|ref|YP_251110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium K411]
 gi|123650729|sp|Q4JUL5|MNMA_CORJK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68264004|emb|CAI37492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium K411]
          Length = 395

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 207/390 (53%), Gaps = 46/390 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRVV AMSGGVDS+V A+     G++VIGV L L  S +A  R GS  CC+ +D  DARR
Sbjct: 1   MRVVAAMSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL  +  LG 
Sbjct: 60  VADKLGIPFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +RL+ G       +M R +D  +DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVVTGHY--ARLHDG-------VMRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
            +R+ A++ G  +A K DS DICF+  G+    + K+I     L  D    +G  +  H+
Sbjct: 171 EIREEAKDHGFGVASKPDSHDICFIPDGQTQAFLGKKIGLRPGLMKD---QDGSTVAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G+P +V  +D  +  V +G R+ L V  I    +  L  
Sbjct: 228 GVYGFTIGQRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRL-- 285

Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVF---------------VQRNDDGVY---VDFE 353
               D  V G  F+C V++R+    VP                 V++ D+  +   +D  
Sbjct: 286 ----DPAVHGREFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEDESPWRLELDLH 341

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +   GVA GQA V Y  D++   +LG G I
Sbjct: 342 EPLQGVARGQAAVVYQPDADGDILLGSGTI 371


>gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 4222]
 gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 4222]
          Length = 376

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 204/379 (53%), Gaps = 19/379 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E+    
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            G   + V +  FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA VFY  
Sbjct: 294 VGWVSNKVKETEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDG 353

Query: 371 DSNEARVLGGGIISGSKRS 389
           D      LGG  I    RS
Sbjct: 354 D----ECLGGATIDEVYRS 368


>gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           halodurans C-125]
 gi|14195281|sp|Q9KDF2|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus
           halodurans C-125]
          Length = 371

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 205/375 (54%), Gaps = 27/375 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P+  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 4   KRPEQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYQD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +VC+ + +++Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L+    
Sbjct: 61  VVQVCNQLGIAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHALT 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + +     DG+ + I  R  D  +DQ+YFL A +QQQL  + FPLG +
Sbjct: 121 LGADYVATGHYAQVK---NVDGQYQLI--RGKDPNKDQTYFLNALSQQQLSRVMFPLGHL 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR +A   GL  A K DS  ICF+ +  + + +       A  G++  L+G++ G 
Sbjct: 176 EKKEVRAIAERAGLATAKKKDSTGICFIGKRDFKEFLSSYLP--AQPGEMQTLDGEVKGT 233

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LR--EIN 309
           H+G++ YT+GQR+GLG+   GEP FV+   KN  + I+   +      +Y   LR  ++N
Sbjct: 234 HDGLMYYTLGQRQGLGIGGSGEPWFVI--GKNLEKNILYVGQGFHHPGLYSEGLRAIKVN 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W    +      + F+C  K R  Q    V V    DG V V F + +  +  GQA VFY
Sbjct: 292 W----ILRRESDEPFECTAKFRYRQPDQKVTVYPQSDGAVEVLFAEPQRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 348 DGDV----CLGGGTI 358


>gi|317969133|ref|ZP_07970523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0205]
          Length = 397

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 208/398 (52%), Gaps = 33/398 (8%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  +EA  L    L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +    
Sbjct: 15  VAATEAGALAIERLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG--- 71

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              KG+CCA + + DA  VC+ + V H+V D+ E F+  ++      Y AG TPLPC  C
Sbjct: 72  ---KGACCA-EGLVDAAGVCEQLEVPHHVVDFREHFKEQIVDFLVQGYEAGVTPLPCSRC 127

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLF 178
           NR VKF  +L   ++    D +ATGHY R R   GD  +  R  + R +D  +DQSYFL+
Sbjct: 128 NREVKFGPMLRWAKEERKIDRIATGHYARVRH--GDQSENGRHQLLRGLDERKDQSYFLY 185

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
              Q+ L  L FPLG++ K   R  A   GL  A K +SQD+C      +  +   ++A 
Sbjct: 186 DLPQEALGRLVFPLGELTKPDTRLEADRHGLRTAQKPESQDLCLADH--HGSMKAFLDAY 243

Query: 239 IAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
           +    G IV  +GQ++G H+GI ++TIGQR+GLGVA  EPL VV LD   ++V+V PR  
Sbjct: 244 LPPRPGQIVLADGQVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGVMNQVVVAPRRD 303

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGV---- 348
                  +  +NW+          +     V++R    P     +P+    +D       
Sbjct: 304 AARGEAVVGAVNWVSIA----PPTEPLDVEVQVRYRSGPQQARLIPLPETESDRAADRPH 359

Query: 349 --YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              ++F + +  +  GQA VFY  +     VLGGG+I 
Sbjct: 360 RCRLEFAEEQFSITPGQAAVFYAGEM----VLGGGLIQ 393


>gi|289549263|ref|YP_003474251.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermocrinis albus DSM 14484]
 gi|289182880|gb|ADC90124.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermocrinis albus DSM 14484]
          Length = 349

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 195/365 (53%), Gaps = 20/365 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ V MSGGVDSSV A LLK +G++VIGVTL+ Y +   ++    CC+ QDV DA  V 
Sbjct: 1   MRIAVGMSGGVDSSVTALLLKEEGHEVIGVTLRFYKAVCNTEDLRVCCSPQDVKDAVLVS 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
             + + H   D+E+ F   VI  F   Y  G TP PC  CNR VK   L    R +   D
Sbjct: 61  QRLGIPHITLDWEKIFYERVIKYFVEGYKEGITPNPCAVCNREVKTGFLARYLRNVALID 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY+R   Y+G       ++ R  D  RDQSYF+     + +  L FPLGD  KE 
Sbjct: 121 RLATGHYVRKIQYMGYS-----LLARGKDTTRDQSYFMALVRGEDIPLLEFPLGDKTKEE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DSQ++CF+      + +K I      EG IV+  G+++G+H G 
Sbjct: 176 VRKIAEEKGLPTARKRDSQEVCFLMGRSPGEYMKDILG--EREGPIVY-KGKVVGKHRGY 232

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGL VA+G+P++V  +D  ++ V VG  E L    + L +IN      F   
Sbjct: 233 YAYTVGQRRGLSVALGKPVYVTGIDPITNTVFVGDEEELYKDWLLLEDIN------FHLP 286

Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +  V+ R     V V  +++  +G  V  ++    +  GQ C FY  D     +L
Sbjct: 287 MHLWSRPAVQTRYRSKTVEVRDIEKLPNGYKVYLKEPVRAITPGQVCAFYEGDV----LL 342

Query: 379 GGGII 383
           GGGII
Sbjct: 343 GGGII 347


>gi|298245195|ref|ZP_06969001.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552676|gb|EFH86541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Ktedonobacter racemifer DSM 44963]
          Length = 391

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/399 (35%), Positives = 202/399 (50%), Gaps = 46/399 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---------KGSCCAGQD 72
           R+VVAMSGGVDSSV AALLK  G++VIG+ L+L++     +          +  CC+ + 
Sbjct: 3   RIVVAMSGGVDSSVAAALLKEQGHEVIGMMLRLWSEPGVIEAEDDGVERVVQNKCCSLES 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DARRV   +++  Y+ + E+ F+  ++  F   Y AG TP PC+ CNR ++F+ LL+ 
Sbjct: 63  VDDARRVARMLDIPFYLVNVEQEFKERIVDSFYEDYVAGRTPNPCLTCNRHIRFTVLLNK 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              L AD LATGHY+R      DD  +   R + R +D ++DQSY L    Q QL    F
Sbjct: 123 ALALEADYLATGHYVRV-----DDHPQTGRRRLRRGLDPDKDQSYVLHVLNQHQLSHACF 177

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG------------ 238
           PLG   K  VR +A E G+++A K++SQ+ICFV Q  Y   + R  A             
Sbjct: 178 PLGGYTKPQVRAMAAERGMNVATKAESQEICFVAQNDYRGFIDRYAASKQEDDALVPAGV 237

Query: 239 ------------IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286
                       I   G I    G +LGRH G+  YTIGQR+GLG+    PL V+ LD +
Sbjct: 238 TATATAAQPLITIPRPGPIYDQQGTLLGRHRGLAYYTIGQRKGLGLTSPAPLHVLKLDAD 297

Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-ND 345
            + +IVGP  +L+     + ++++       D     F+  V++R      P  V     
Sbjct: 298 QNALIVGPATALDQQEFTIGKMHYTTG----DVPTAPFEALVRVRYKAPEQPALVTPLEG 353

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
               V     +  +  GQA V Y  +  +  VLGGGII 
Sbjct: 354 QRARVQLVHPQRAITPGQAAVLYGGEDGD-EVLGGGIIE 391


>gi|269794372|ref|YP_003313827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
 gi|269096557|gb|ACZ20993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
          Length = 407

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 211/399 (52%), Gaps = 35/399 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA +   G++V+GV + L  +R    R+GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSAVAAARIVDAGHEVVGVHMALSRNRN-QFREGSRGCCSIEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + +YV+D  E+F + V+  F S YAAG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADVLGIPYYVWDLSEKFEDTVVADFLSEYAAGRTPNPCVRCNEHIKFEALLDKATALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D +ATGHY +       DG   R + R  +  +DQSY L     ++L    FPLG  + K
Sbjct: 120 DAVATGHYAQVITSTRPDGSELRELHRSPNTAKDQSYVLAVMGPERLRRAMFPLGAFESK 179

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGR 255
           ++VR  A   GL ++ K DS DICFV  G  K F + +R+       GDIV ++G +LG 
Sbjct: 180 DAVRAEAAARGLSVSAKPDSYDICFVADGDTKGF-LQERLGTKT---GDIVDVDGTVLGE 235

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   YT+GQR+GL +    A G+  +V+ +   S+ V+VGP E L V RI   +  WL
Sbjct: 236 HEGAYAYTVGQRKGLAIGRPAADGKARYVLDIQPVSNTVVVGPAEMLSVDRITGDQSVWL 295

Query: 312 GD----------GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKS 355
            D          G    A        V++R+  +PVP  V+   D      G+ V+   +
Sbjct: 296 ADDVLAAHGAETGSTAAAPSGWIDAEVQVRAHGEPVPARVRAVPDASGATGGMEVELVGA 355

Query: 356 EV-GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            + GVA+GQ+ V Y       RVLG   +  S R+   E
Sbjct: 356 TLRGVAAGQSLVAYLG----TRVLGQSTVVASTRAGRAE 390


>gi|205815001|sp|A1R863|MNMA_ARTAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 379

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 200/384 (52%), Gaps = 29/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY +    V +D    R + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
             VR  A   GL +A+K DS DICF+  G     + ++I+      GDIV   G  +G H
Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKID---MTTGDIVDETGAKVGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQRRGL +    A G+P FV+ +    ++V+VGP   L +  I   +++W G
Sbjct: 233 PGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGV-----YVDFEKSEVGVASGQ 363
             + E A    F C  ++R+  DPVP   +     ++ GV      V       GVA GQ
Sbjct: 293 LPISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQ 352

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
             V Y      +RVLG   I  ++
Sbjct: 353 TVVLYQG----SRVLGQATIDAAR 372


>gi|304413559|ref|ZP_07395032.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Regiella insecticola LSR1]
 gi|304284402|gb|EFL92795.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Regiella insecticola LSR1]
          Length = 367

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 209/374 (55%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V MSGGVDSSV A LLK+ GY V G+ ++ +   +       C A +D+ DA+ VCD
Sbjct: 8   KIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMKNW---EEDDNDTYCGAAKDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +N++ +  ++   + + V   F + Y AG TP P + CN+ +KF+  LS    +L AD 
Sbjct: 65  KLNINLHRVNFAAEYWDNVFKLFLAEYQAGRTPNPDILCNKEIKFNAFLSFACEELEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     G     +  + R +D  +DQSYFL+   QQQL    FP+GD+KK  V
Sbjct: 125 IATGHYVRRHTSAG-----KNCLLRGLDDNKDQSYFLYTLNQQQLARSLFPIGDLKKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ LG+H+G++
Sbjct: 180 RNIAEQLNLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGSIISVDGQDLGQHHGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKN--SSRVIVG---PRESLEVHRIYLREINW 310
            +T+GQR+GLG+       G P +VV  DKN  ++ ++V        L  H +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGIKEGNGAPWYVV--DKNIATNTLLVAQDHKHAKLMSHGLIAQQLSW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +       ++    +C VK R  Q  +P  V  + ++ + V FE+  V V  GQ+ VFY 
Sbjct: 296 ID----LPSLTFPLRCMVKTRYRQQDIPCTVFSKAENSIEVRFEQPIVAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGII 383
            D      LGGGII
Sbjct: 352 GDI----CLGGGII 361


>gi|305682215|ref|ZP_07405019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305658688|gb|EFM48191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/376 (39%), Positives = 202/376 (53%), Gaps = 23/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA   + G+DV+GV L L    +A +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVKAGHDVVGVHLALSQDPQAVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKTDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG  R    R +D  +DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPADGGDGYLR----RGVDPNKDQSYVLGVLGHHEIAHCMFPVGDTIKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R+ A  MG  +A K DS DICF+  G   +    +   I L  G IV   G  L  H+
Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDG---NTQAFLGERIGLRPGMIVDTEGNKLREHD 233

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  NYTIGQR+GL +    A G+P +V  ++  +  V VG R  L V  I    + +L  
Sbjct: 234 GAWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIEADRLKYL-- 291

Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 ++DG F   V++R+    VP  V V R  D + ++ +K+  GVA GQA V Y  
Sbjct: 292 ----HPMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVARGQAAVLYLP 347

Query: 371 DSNEARVLGGGIISGS 386
           D     VLG G I G+
Sbjct: 348 DPGGDIVLGSGTICGT 363


>gi|296124260|ref|YP_003632038.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Planctomyces limnophilus DSM 3776]
 gi|296016600|gb|ADG69839.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Planctomyces limnophilus DSM 3776]
          Length = 392

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/389 (37%), Positives = 209/389 (53%), Gaps = 31/389 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---------------KRKGS 66
           RVV+AMSGGVDSSV A LL++ GY+VIG+ ++   +  ++                 K  
Sbjct: 9   RVVLAMSGGVDSSVAAVLLQQQGYEVIGLFMRSGEASASACSLPPSGLLPVIERKSHKQG 68

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+  D  DA+RV D +++  +  ++ + F + +   FA  Y  G TP PCV CN  +KF
Sbjct: 69  CCSAADAADAQRVADLLDIPFHALNFRDSF-DQIKSYFADEYLKGRTPNPCVMCNVWLKF 127

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    +Q+GA  +ATGHY R    + D+  + R+M R  DL +DQSY LF      L 
Sbjct: 128 GRLWEFAQQVGATRIATGHYAR---IIQDEFGQTRLM-RGADLSKDQSYVLFGIRPDILS 183

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            + FP+G   K  +R++A +  L +A K DSQ+ICF+    Y   ++R        G+ V
Sbjct: 184 KILFPVGHQPKAEIREIAAQANLRVAGKPDSQEICFIPDNDYRGFLRRYRDVSDTSGNFV 243

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
              G+ILG+H+G   +TIGQRRGLG+A+GEP FV+ +D  S  V +G  E L    +   
Sbjct: 244 DPQGKILGQHSGFEQFTIGQRRGLGIALGEPRFVIKIDAESRNVTLGTAEELGSSSLVAA 303

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
             NWL          + F C  +IRS       + Q + DG +++ F + + GVA GQA 
Sbjct: 304 RTNWL-----SAPTSEVFSCTAQIRSMHRAAAAWAQVDADGTLHLRFCEPQSGVAPGQAV 358

Query: 366 VFYTSDSNEARVLGGGIISGSK--RSDAV 392
           V Y  DS E RV+ G  I  S+  R+DA+
Sbjct: 359 VLY--DSLE-RVICGAWIEDSQPPRADAL 384


>gi|271969310|ref|YP_003343506.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptosporangium roseum DSM 43021]
 gi|270512485|gb|ACZ90763.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptosporangium roseum DSM 43021]
          Length = 356

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 199/371 (53%), Gaps = 27/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA +   G+DV GV L L ++   S R G+  CC  +D  DARR
Sbjct: 3   LRVLAAMSGGVDSAVAAARIAEAGHDVTGVHLAL-SANPQSYRTGARGCCTIEDSRDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  Y++D  ERF   V+  F S YAAG TP PC+ CN  +KF  +L     LG 
Sbjct: 62  AADVIGIPFYIWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFEAVLDRALALGF 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGH+ R       DG    ++ R  D  +DQSY L   T++QL    FPLGD  K 
Sbjct: 122 DAVATGHHARIA-----DG----VLSRSPDEGKDQSYVLGVLTREQLKHAIFPLGDSTKA 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHN 257
            VR+ A   GL +ADK DS DICF+  G     +  R+    A +G IV  +G ++GRH 
Sbjct: 173 QVREEAARRGLMVADKPDSHDICFIADGDTRGFLADRLG---AEQGPIVDESGAVVGRHE 229

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G P +V+ ++  S+ V VGPR +LEV  I      W G 
Sbjct: 230 GAYGFTVGQRKGLHIDRPAPDGRPRYVLSIEPVSNTVTVGPRSALEVTGIVATRPVWNGP 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               D   +   C V++R+  +      Q + D V++  +    GVA+GQA V Y  D+ 
Sbjct: 290 A---DVPHEPLTCTVQLRAHGEVYGCRAQLSGDEVHIALDTPATGVAAGQAAVLYLGDT- 345

Query: 374 EARVLGGGIIS 384
              V+G   I+
Sbjct: 346 ---VIGSATIA 353


>gi|254525416|ref|ZP_05137468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221536840|gb|EEE39293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 385

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTDSYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138

Query: 142 ATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R        +L       +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYVEKLNCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+I+H+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H GI ++T+GQR+GLG+A  EPL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHKGIQHFTVGQRKGLGIAWPEPLYVKSLDRGKNIVYVSDKSDLFNKEAIISKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDG----VYVDFEKSEVGVASGQACVF 367
               D      +   +IR    PV   +   +N D       + FE+++  +  GQA VF
Sbjct: 317 ----DEPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKKFKLIFEENQSSITPGQAAVF 372

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  D     +LGGG+I+
Sbjct: 373 YKGDI----LLGGGLIN 385


>gi|159903879|ref|YP_001551223.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9211]
 gi|205816902|sp|A9BBQ7|MNMA_PROM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|159889055|gb|ABX09269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 406

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 142/407 (34%), Positives = 217/407 (53%), Gaps = 51/407 (12%)

Query: 10  NSLDLDKNPKDMRVV-------------VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN 56
           N   L+++P +M VV             V +SGGVDSS+ AALL   G+ V G+TL L  
Sbjct: 13  NKSKLERSPIEMEVVSHLKQLQGEHAIAVGLSGGVDSSLTAALLVEAGWKVEGLTLWLME 72

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
                  KGSCC  + + DA  +C+ + + H+V D    F+  V+    + Y  G TPLP
Sbjct: 73  G------KGSCCT-EGLVDAAGICEQLKIPHHVVDERSTFQKEVVENLVNGYQEGITPLP 125

Query: 117 CVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIR------SRLYVGDDGKRRRIMCRPMDL 169
           C  CNR VKFS +++  R+      +ATGHY R      ++L   D+ K R  + R +D 
Sbjct: 126 CSRCNRFVKFSPMINWARKNRNLKRIATGHYARIKHAETNKLNSLDERKNRHQLLRGIDQ 185

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
            +DQSYFL+  +Q+ L  + FPLG + K   R  A   GL  A+K +SQD+C  +  K+ 
Sbjct: 186 NKDQSYFLYDLSQEILGHVVFPLGALTKSFTRKEANRYGLRTANKKESQDLCLAE--KHG 243

Query: 230 DVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
            +   +N  +   +G+IV  +G ++G H+GI ++TIGQR+GLG+A  EPL V+ +  + +
Sbjct: 244 SMKAFLNNYLPPRKGEIVLTDGLVVGEHDGIEHFTIGQRKGLGIAWKEPLHVINIQPSLN 303

Query: 289 RVIVGPRESLEVHRIYLREINWLG-DGLFEDAVVDGFKCFVKIRSSQDPV--------PV 339
           RVIVGPR+        + E+NW+      ++ +V+     V++R   DPV        P 
Sbjct: 304 RVIVGPRDQSGRSNCTVGEVNWVSISAPMQERLVE-----VQVRYRSDPVKAKLVPIEPT 358

Query: 340 FVQRNDDGVY---VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                ++  +   ++FE  +  ++ GQA VFY  +     VLGGGII
Sbjct: 359 IKDIKNNRPHRCRIEFENPQFSISPGQAAVFYKGEV----VLGGGII 401


>gi|90408225|ref|ZP_01216392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas sp. CNPT3]
 gi|90310671|gb|EAS38789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas sp. CNPT3]
          Length = 369

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 209/374 (55%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +    +S+    C A QD+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSSEY---CAAAQDLQDAQAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD
Sbjct: 64  DKLDIKLHTVNFSAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R R   G        + R +D  +DQSYFL+A  ++Q+    FP+G+++K  
Sbjct: 124 FIATGHYVRRREVNG-----HVQLLRGLDTNKDQSYFLYAVGEKQIAQTLFPVGELEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A + GL  A+K DS  ICF+ + K+ D ++      A  GDIV   G+++G+H G+
Sbjct: 179 VRRIAEQQGLITANKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPEGKVIGKHQGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+     A  +P +VV  D  ++R++V       +L  + +   + +W+
Sbjct: 237 MYHTLGQRKGLGIGGRQDANEDPWYVVAKDMPNNRLLVAQGANNPALLSYGLIATKCDWV 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
              + ++A    F C +K R  Q  VP  V   +DD + V FE  +  V  GQ+ VFY  
Sbjct: 297 DRKILKEA----FTCTLKTRYRQQDVPCTVTPLDDDTLRVIFETPQSAVTPGQSAVFYMQ 352

Query: 371 DSNEARVLGGGIIS 384
           +      LGG II 
Sbjct: 353 EV----CLGGAIIE 362


>gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9241]
 gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141111|ref|YP_085718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus E33L]
 gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1]
 gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055]
 gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
 gi|301055904|ref|YP_003794115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis CI]
 gi|71658010|sp|Q634E9|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73919896|sp|Q6HDD0|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205814924|sp|A0RJ05|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811444|sp|B9IYG1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9241]
 gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus E33L]
 gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Q1]
 gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
 gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 371

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 289 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363


>gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264]
 gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus B4264]
          Length = 372

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 290 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364


>gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus NVH0597-99]
 gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus H3081.97]
 gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187]
 gi|218905591|ref|YP_002453425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH820]
 gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB102]
 gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus NVH0597-99]
 gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus H3081.97]
 gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH187]
 gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH820]
 gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB102]
          Length = 372

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364


>gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al
           Hakam]
 gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-42]
 gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 95/8201]
 gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST26]
 gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 4342]
 gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis str. Al Hakam]
 gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 4342]
 gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST26]
 gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 95/8201]
 gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-42]
 gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 376

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BGSC 6E1]
 gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BGSC 6E1]
          Length = 376

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYGGD----ECLGGATIDEVYRS 368


>gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0488]
 gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0442]
 gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0193]
 gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0465]
 gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0389]
 gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0174]
 gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227817175|ref|YP_002817184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. CDC 684]
 gi|229601635|ref|YP_002868683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0248]
 gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0488]
 gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0193]
 gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0442]
 gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0389]
 gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0465]
 gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0174]
 gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. CDC 684]
 gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0248]
          Length = 372

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364


>gi|296127476|ref|YP_003634728.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Brachyspira murdochii DSM 12563]
 gi|296019292|gb|ADG72529.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Brachyspira murdochii DSM 12563]
          Length = 352

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 201/369 (54%), Gaps = 27/369 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78
           ++ V MS GVDS+  A +LK  G +V GVT+ L+N  K +   GSC +      V + R+
Sbjct: 3   KIAVGMSAGVDSTTTAKILKEKGNEVFGVTMLLWNGDKRAPLSGSCYSPSQLKMVEECRK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I + +Y FD  + F+  VI   A SY  G TP PC+ CN  +KF  L     + G 
Sbjct: 63  YAQAIGIDYYAFDVSDMFQKKVIDYVAESYKKGLTPNPCIMCNSQIKFMALFEAIEKQGL 122

Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D  ATGHY   +    D+  +R ++ R  +L +DQSYFL+  TQ QL  + FP+ +  
Sbjct: 123 EFDKFATGHYAGIKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQNQLSKIIFPMHENT 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
           KE  R +ARE  L++A+KS+SQD    +  + FD  +        EGDI++++  +ILG 
Sbjct: 180 KEDTRKMAREYNLEVAEKSESQDFFAGEYSRLFDEDR--------EGDIINIDTNEILGH 231

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI +YT+GQR+GLG+A  EPLFVV LD  ++ V VG +    V+ + + ++NW+ +  
Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFVVSLDSKTNTVYVGNKNHTFVNEVTVYDVNWIAEPR 291

Query: 316 FEDAVVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            ++     F+  VK RS+    +   +   ++ + + F +    VA GQ+CV Y  D   
Sbjct: 292 DKE-----FEALVKTRSAHKGSMARVIPIEENVINIKFFEPTGIVARGQSCVCYDEDV-- 344

Query: 375 ARVLGGGII 383
              L GG++
Sbjct: 345 --TLCGGVV 351


>gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB108]
 gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB108]
          Length = 372

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVSVQIVDENTVRILCDEPIRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364


>gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames]
 gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne]
 gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger
           B]
 gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum]
 gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
           Australia 94]
 gi|73919893|sp|Q81JE5|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. Ames]
 gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. Sterne]
          Length = 371

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 289 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363


>gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Bacillus anthracis str. A2012]
          Length = 376

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1271]
 gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1271]
          Length = 376

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           I W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 IGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|119962187|ref|YP_948425.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter aurescens TC1]
 gi|119949046|gb|ABM07957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter aurescens TC1]
          Length = 436

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 200/384 (52%), Gaps = 29/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 58  MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 116

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 117 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 176

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY +    V +D    R + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 177 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 232

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
             VR  A   GL +A+K DS DICF+  G     + ++I+      GDIV   G  +G H
Sbjct: 233 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKID---MTTGDIVDETGAKVGEH 289

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQRRGL +    A G+P FV+ +    ++V+VGP   L +  I   +++W G
Sbjct: 290 PGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAG 349

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGV-----YVDFEKSEVGVASGQ 363
             + E A    F C  ++R+  DPVP   +     ++ GV      V       GVA GQ
Sbjct: 350 LPISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQ 409

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
             V Y      +RVLG   I  ++
Sbjct: 410 TVVLYQG----SRVLGQATIDAAR 429


>gi|226312727|ref|YP_002772621.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
 gi|226095675|dbj|BAH44117.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
          Length = 370

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 210/379 (55%), Gaps = 31/379 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P+D RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 2   KRPEDTRVVVGMSGGVDSSVTAYLLKQQGYDVIGIFMKNWDD---TDEFGHCTAEEDFQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            RRVC+ I + +Y  ++E+ + + V   F   Y  G TP P V CNR +KF +LL+    
Sbjct: 59  VRRVCEQIGIPYYTVNFEKEYMDKVFQYFLDEYKRGRTPNPDVMCNREIKFGELLAKVMD 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + + Y+  DG+ + I  R  D  +DQ+YFL    Q+QL    FP+G +
Sbjct: 119 LGADYIATGHYAQVK-YI--DGEYKLI--RGADNNKDQTYFLNVLGQEQLSKTMFPIGHL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++A + GL  A K DS  ICF+ +  + + ++  N   A +G+I  ++G ++G 
Sbjct: 174 PKPQVREIAEKAGLYTAKKKDSTGICFIGERNFREFLQ--NYLPAKQGNIETVDGAVIGT 231

Query: 256 HNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR---- 306
           H+G++ YT+GQR+     G     G+P FVV  D   + +IVG  E  +  R+Y +    
Sbjct: 232 HDGLMYYTLGQRQGLGIGGGHGTSGQPWFVVDKDLERNALIVG--EGSDHIRLYSKSLLA 289

Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             ++W+ D        + F C  K R  Q    V V   +DG V V F++ +  V  GQA
Sbjct: 290 TNVSWVSD----KKPSETFTCTAKFRYRQPDQGVTVHLLEDGNVEVVFDQPQKAVTPGQA 345

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY    N    LGGG I
Sbjct: 346 VVFY----NGEVCLGGGTI 360


>gi|309812162|ref|ZP_07705920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dermacoccus sp. Ellin185]
 gi|308433849|gb|EFP57723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dermacoccus sp. Ellin185]
          Length = 384

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 209/387 (54%), Gaps = 27/387 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRVV AMSGGVDS+V A+ +   G+DV+GV L L  S  A+ R+ +  CC  +D  DARR
Sbjct: 1   MRVVAAMSGGVDSAVAASRMLEAGHDVVGVHLALSQS-AATLRESARGCCTIEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D  ERF+  V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VADRLGIPFYVWDMAERFKADVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +++  G +GK    + R +D+ +DQSY L     +QL    FPLGD  K 
Sbjct: 120 DAVATGHY--AQIVEGPNGKE---LHRAVDMAKDQSYVLGVLDAEQLAHSFFPLGDTTKP 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            +R+ A   G  +A+K DS DICF+  G  K + + KR+       GDIV  +G+++GRH
Sbjct: 175 QIREEAAAKGFYVANKPDSHDICFIADGDTKAW-LTKRLG---EKPGDIVDTDGEVVGRH 230

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGLG+ +        +VV +   ++ V+VG  + L V  I      W G
Sbjct: 231 EGAYAYTVGQRRGLGLKVPRDDHAKRYVVDVQPKTNTVVVGTADLLGVDVIEGLHARWPG 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   V   +   ++R+  +  P  V  +DD V V  +    GVA GQ+ V Y    
Sbjct: 291 -----PPPVGEVRLGAQLRAHGEEFPATVTADDDRVVVRLDARTRGVAPGQSVVLYEG-- 343

Query: 373 NEARVLGGGIISGSKRSDAVEESLLSV 399
              RV+G   I+ + R+     S+++V
Sbjct: 344 --TRVVGSATITATSRAPRQSSSVVTV 368


>gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987]
 gi|73919894|sp|Q730D7|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10987]
          Length = 371

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 289 VGWVSNKAKEKE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363


>gi|315604614|ref|ZP_07879677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313626|gb|EFU61680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 363

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 147/378 (38%), Positives = 206/378 (54%), Gaps = 25/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +S+    R GS  CC+ +D  DA R
Sbjct: 1   MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPQECRIGSRGCCSIEDAGDAAR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I +  YV+D  + F   VI  F + Y AG TP PCV CN  VKF +L S  R LG 
Sbjct: 60  AAQIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELASRARALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  + +  G  G     + R  D  +DQSY L     ++L  +  PLG    K
Sbjct: 120 DAVCTGHY--AAIVDGPSGPE---LHRGADALKDQSYVLAVMGPEELARVVLPLGQAPSK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A  +GL +++K DS DICF+  G     + R + G A EG+IV  +G++LGRH 
Sbjct: 175 AWVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFL-RAHLG-ASEGEIVTPDGEVLGRHE 232

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  NYT+GQR+GLG+      G P +V+     +++V+VGP E L + RI+     WL  
Sbjct: 233 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGPSELLSISRIHATNAVWLAS 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVD--FEKSEVGVASGQACVFYTS 370
              +DA  +    FV++R+   P+PV  + R++    +D   E    GVA GQ+ V Y  
Sbjct: 293 ---DDAGNEPADLFVQLRAHGAPIPVAELVRDEASATIDVVLEDGARGVARGQSMVIYRG 349

Query: 371 DSNEARVLGGGIISGSKR 388
               +RVLG G I  ++R
Sbjct: 350 ----SRVLGEGTIGRTER 363


>gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 365

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 206/374 (55%), Gaps = 18/374 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G+C A QD  D RRVC+
Sbjct: 4   RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVCE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E  +   V   F   +  G TP P V CNR +KF +LL+    LGAD L
Sbjct: 61  QIGIPYYGVNFEREYEERVFQHFLEEFRRGRTPNPDVLCNREIKFKELLACALDLGADYL 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R    +DG     + R  D  +DQ+YFL   TQ  L    FP+G + K  VR
Sbjct: 121 ATGHYAQVRQL--EDGS--VALVRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL +A K DS  ICF+ +  +   +++     A  G I  ++G++LG H+G++ 
Sbjct: 177 QIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLMY 234

Query: 262 YTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFE 317
           YTIGQR+GL   G+   +P     +DK+ +R ++   +  +  R+Y R ++      + E
Sbjct: 235 YTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALSADTVSFVAE 294

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               + F+C  K R  QD  PV V+   +D   V F++ +  +  GQ+ VFY  D     
Sbjct: 295 RPPAERFRCTAKFRYRQDDQPVKVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGDI---- 350

Query: 377 VLGGGIISGSKRSD 390
            LGGGII+  +  D
Sbjct: 351 CLGGGIIASREPVD 364


>gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 200]
 gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 200]
          Length = 376

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKAKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|225016206|ref|ZP_03705398.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
           DSM 5476]
 gi|224951028|gb|EEG32237.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
           DSM 5476]
          Length = 352

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 14/364 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVCDT 82
           ++ MSGGVDSSV AALL   GY+V+G T +L+         + +CC+  D+ DAR VC  
Sbjct: 1   MIGMSGGVDSSVAAALLIEQGYEVVGATFRLWKPEDDLFDSEATCCSLDDINDAREVCHQ 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV + +  F+ AV+  F   Y AG TP PC+ CN+ +KF         LG D +A
Sbjct: 61  LGIPHYVLNLKREFKEAVVQNFVEEYQAGRTPNPCIVCNQKIKFDYFYQKAAALGFDYVA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY  +R+   + G+ +  +      ++DQSYFL+      L  + FPLG   K  VR+
Sbjct: 121 TGHY--ARIEQNEQGEFQ--LKTAAYAQKDQSYFLYGIPYPNLGHILFPLGGYTKPQVRE 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + G  ++ K DSQ+ICFV +  Y   ++R    I  +G+ +   G +LG H GI +Y
Sbjct: 177 LAEKYGFSVSHKRDSQEICFVDRNGYGTFLERFTGTIPPKGNFIDSQGTVLGEHKGIWHY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLG+A G+P++V  ++   + V +   E     R+    +N+    L       
Sbjct: 237 TVGQRKGLGMAFGKPMYVSEINPADNTVRLVDDEENYSSRLTAERMNY----LIPHPPSK 292

Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +  VKIR+  +  P  +   ++  + + F++ +  +  GQ+ V Y  +      LGGG
Sbjct: 293 PVRVQVKIRNRAEFAPALLTPLSEAKIELAFDQPQRAITKGQSAVLYDGEV----CLGGG 348

Query: 382 IISG 385
           II+ 
Sbjct: 349 IITA 352


>gi|124023662|ref|YP_001017969.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963948|gb|ABM78704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 431

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 207/391 (52%), Gaps = 46/391 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   + DA 
Sbjct: 54  PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 106

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT---R 134
            +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+ +LS     R
Sbjct: 107 GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWAEKER 166

Query: 135 QLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           QL    +ATGHY R R            GD   R +++ R +D  +DQSYFL+  +Q  L
Sbjct: 167 QL--HRVATGHYARIRHREDPEPQQALPGDSSGRHQLL-RGLDQNKDQSYFLYDLSQDVL 223

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEG 243
             + FPLG++ K   R  A   GL  A K++SQD+C      ++  +K    N   A +G
Sbjct: 224 AKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCL---ADHYGSMKAFLDNYLPARQG 280

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR        
Sbjct: 281 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 340

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVD--------F 352
            +  +NW+       A+       V++R    PV    + ++   + +  D        F
Sbjct: 341 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 396

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  +  GQA VFY +D+    VLGGG+I
Sbjct: 397 NEEQFSITPGQAAVFYAADA----VLGGGLI 423


>gi|119717667|ref|YP_924632.1| tRNA-specific 2-thiouridylase MnmA [Nocardioides sp. JS614]
 gi|205816899|sp|A1SMB0|MNMA_NOCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119538328|gb|ABL82945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardioides sp. JS614]
          Length = 366

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 201/377 (53%), Gaps = 24/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV G+ L L  + + S R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAAEAGHDVTGIHLALSRNPQ-SYRSGARGCCTIEDSNDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  +RF   V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADVIGIPFYVWDLSDRFHEDVVEDFMAEYAAGRTPNPCLRCNEKIKFAAVLDRALGLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +RL  G DG     M R +D  +DQSY L    Q QL    FPLG   K+
Sbjct: 120 DAVATGHY--ARLVAGADGLVE--MHRAVDHGKDQSYVLGVLDQGQLRHSLFPLGGSTKD 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDIVHLN-GQILGR 255
            VR  A E GL +ADK DS DICF+  G     ++    +     EG IV  + G++LGR
Sbjct: 176 EVRREAAERGLLVADKPDSHDICFIADGDNAGWLREKLGDRAPHHEGTIVDDDTGEVLGR 235

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   +TIGQR+GL +      G P FV+ ++  S  V VGP E L VHR+      W 
Sbjct: 236 HEGSYGFTIGQRKGLRIGRPAPDGRPRFVLDIEPVSGTVTVGPHERLAVHRLRGIRPRWC 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G       V D     V++R+  +     + R+ D V ++  +   G+A GQA V Y   
Sbjct: 296 G------TVPDRLSGTVQLRAHGEEHRAVLVRDGDEVDIELLEPAYGIAPGQAAVLY--- 346

Query: 372 SNEARVLGGGIISGSKR 388
            + +RV+G   IS + R
Sbjct: 347 -DGSRVVGSATISATDR 362


>gi|205822245|sp|A2CB44|MNMA_PROM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 409

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 207/391 (52%), Gaps = 46/391 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   + DA 
Sbjct: 32  PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 84

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT---R 134
            +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+ +LS     R
Sbjct: 85  GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWAEKER 144

Query: 135 QLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           QL    +ATGHY R R            GD   R +++ R +D  +DQSYFL+  +Q  L
Sbjct: 145 QL--HRVATGHYARIRHREDPEPQQALPGDSSGRHQLL-RGLDQNKDQSYFLYDLSQDVL 201

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEG 243
             + FPLG++ K   R  A   GL  A K++SQD+C      ++  +K    N   A +G
Sbjct: 202 AKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCL---ADHYGSMKAFLDNYLPARQG 258

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR        
Sbjct: 259 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 318

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVD--------F 352
            +  +NW+       A+       V++R    PV    + ++   + +  D        F
Sbjct: 319 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 374

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  +  GQA VFY +D+    VLGGG+I
Sbjct: 375 NEEQFSITPGQAAVFYAADA----VLGGGLI 401


>gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus MM3]
 gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus MM3]
          Length = 376

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           I W+ +    +A    FKC  K R  Q+   V VQ  D + V +  ++    +  GQA V
Sbjct: 294 IGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDGNTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus R309803]
 gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus R309803]
          Length = 372

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 203/379 (53%), Gaps = 19/379 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E+    
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            G   +   +  FKC  K R  Q    V VQ  D+  V +  ++    +  GQA VFY  
Sbjct: 290 VGWVSNKAKEAEFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDG 349

Query: 371 DSNEARVLGGGIISGSKRS 389
           D      LGG  I    RS
Sbjct: 350 D----ECLGGATIDEVYRS 364


>gi|73919895|sp|Q812R6|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 289 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363


>gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1293]
 gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1293]
          Length = 376

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLVTAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKAKEKE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|30022472|ref|NP_834103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 14579]
 gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1134]
 gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis BMB171]
 gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus cereus ATCC 14579]
 gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1134]
 gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis BMB171]
 gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 372

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 290 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364


>gi|161350046|ref|NP_894177.2| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9313]
 gi|205822220|sp|Q7TTR0|MNMA_PROMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 409

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 204/389 (52%), Gaps = 42/389 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   + DA 
Sbjct: 32  PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 84

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+++LS   ++L
Sbjct: 85  GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWAKKEL 144

Query: 137 GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               +ATGHY R R            GD   R +++ R +D  +DQSYFL+  +Q  L  
Sbjct: 145 QLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLL-RGLDQNKDQSYFLYDLSQDVLAK 203

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDI 245
           + FPLG++ K   R  A   GL  A K +SQD+C      ++  +K    N   A +G+I
Sbjct: 204 VIFPLGELTKAETRQEAERYGLRTAKKEESQDLCL---ADHYGSMKAFLDNYLPARQGEI 260

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR         +
Sbjct: 261 VLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNCVV 320

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGV------YVDFEK 354
             +NW+        +       V++R    PV     P+     D          + F +
Sbjct: 321 GAVNWISMAPPSTTI----NVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTFNE 376

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  +  GQA VFY +D+    VLGGG+I
Sbjct: 377 KQFSITPGQAAVFYAADT----VLGGGLI 401


>gi|78212421|ref|YP_381200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9605]
 gi|123578503|sp|Q3AL87|MNMA_SYNSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78196880|gb|ABB34645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9605]
          Length = 383

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 209/395 (52%), Gaps = 28/395 (7%)

Query: 2   VVSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           V S  TR     L++    P + RV + +SGGVDSS+ AALL   G++V G+TL L +  
Sbjct: 3   VGSTTTRAGEAALERLRQWPGEHRVAIGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG- 61

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
                KG+CCA + + DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC 
Sbjct: 62  -----KGACCA-EGLVDAAGICEQLGIPHHVVDMRETFQQEIVQRLVDGYRDGITPLPCS 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CNR+VKF  +L    Q      +ATGHY R R + GD G+ +  + R +D  +DQSYFL
Sbjct: 116 QCNRSVKFGPMLDWALQERKLPRIATGHYARIR-HGGDRGRHQ--LLRGLDTRKDQSYFL 172

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +   Q+ L  + FPLG++ K   R  A   GL  A+K +SQD+C      +  +   ++A
Sbjct: 173 YDLPQEVLGRIVFPLGELTKPDTRLEAARHGLRTAEKPESQDLCLADH--HGSMRAFLDA 230

Query: 238 GIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
            +   +G+IV  +G ++G H+GI ++T+GQR+GLGVA GEPL V+ LD   +RV+V PR 
Sbjct: 231 YLPPRQGEIVLADGTVVGEHDGIEHFTVGQRKGLGVAWGEPLHVIRLDAAMNRVVVAPRA 290

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVF----VQRNDDGVY 349
                   +  +NW+     E       +       +R+   P+P       +       
Sbjct: 291 EAGRDSCVVGAVNWVSIDPIEAPRTVEVQVRYRSTPVRAELSPLPAIEADQQRERPHRCR 350

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + FE+ +  +  GQA VFY  ++    VLGGG+I 
Sbjct: 351 LSFEEEQFSITPGQAAVFYDGET----VLGGGLIQ 381


>gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis Bt407]
 gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH676]
 gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus F65185]
 gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock4-2]
 gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-15]
 gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-Cer4]
 gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST24]
 gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1550]
 gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 172560W]
 gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10876]
 gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10876]
 gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 172560W]
 gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1550]
 gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST24]
 gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-Cer4]
 gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-15]
 gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock4-2]
 gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus F65185]
 gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH676]
 gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis Bt407]
 gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 376

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368


>gi|297559139|ref|YP_003678113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843587|gb|ADH65607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 362

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 201/379 (53%), Gaps = 29/379 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA +   G+DV GV L L  + + S R G+  CC  +D +DARR
Sbjct: 3   LRVLAAMSGGVDSAVAAARVAEAGHDVTGVHLALSKNPQ-SYRTGARGCCTVEDSHDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  E F   V+  F + Y AG TP PC+ CN  +KF  +L     LG 
Sbjct: 62  AADVIGIPFYVWDMSEEFDREVVQDFVAEYEAGNTPNPCLRCNEKIKFEAVLDRAVALGF 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGH++R       DG+    + R +D  +DQSY L     +QL    FPLGD  K+
Sbjct: 122 DAVATGHHVRKV-----DGR----LVRSVDAAKDQSYVLGVLNAEQLERAVFPLGDCTKD 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHN 257
            VR  A   GL +ADK DS DICF+  G   D    +N  I    G I   +G ++G HN
Sbjct: 173 EVRAEAERRGLSVADKPDSHDICFIADG---DTAGFLNRRIGERPGPIRDEDGTVVGTHN 229

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   +T+GQR+GLG+     P +V+ ++   + V VGPR SL V  I      W G    
Sbjct: 230 GSHTFTVGQRKGLGLGGAAHPRYVLSIEPVDNSVTVGPRASLRVDAITGVRPVWSG---- 285

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDG---VYVDFEKSEVGVASGQACVFYTSDS 372
            + + +   C V++R+  +  P  V QR  DG   + V   +   GVA+GQA V Y  D+
Sbjct: 286 SEPLTEPTDCHVQLRAHGEVYPASVWQREADGGPELVVRLAEPATGVATGQAVVVYQGDT 345

Query: 373 NEARVLGGGIISGSKRSDA 391
               VLG   IS + R+ A
Sbjct: 346 ----VLGSATISATSRTGA 360


>gi|87125503|ref|ZP_01081348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9917]
 gi|86166803|gb|EAQ68065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9917]
          Length = 583

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 207/393 (52%), Gaps = 27/393 (6%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           V+EA      +L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +      
Sbjct: 194 VTEAGHQALANLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSG----- 248

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            KG+CCA + + DA  +CD + + H+V D+   F+  ++      Y  G TPLPC  CNR
Sbjct: 249 -KGACCA-EGLVDAAGICDQLGIPHHVVDFRAHFKEQIVDFLVQGYGEGITPLPCSRCNR 306

Query: 123 TVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            VKF  +L     + G + +ATGHY R R     D    +++ R  D  +DQSYFL+   
Sbjct: 307 EVKFGPMLQWALDERGIERIATGHYARIRHGAQSDNGCHQLL-RGCDSHKDQSYFLYDLP 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+ L  L FPLG++ K   R  A   GL  A K++SQD+C      +  +   ++  +A 
Sbjct: 366 QEALGRLVFPLGELTKSDTRLEAARHGLRTAKKTESQDLCLADH--HGSMRAFLDTYLAP 423

Query: 242 -EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR     
Sbjct: 424 RQGEIVLRDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVQLDGALNRVVVAPRRDAAR 483

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRS---SQDPVPVFVQRNDDGV------YVD 351
               +  +NW+   + E       +  V+ RS   +    P+  Q  D          +D
Sbjct: 484 AGAVVGAVNWV--SIPEPQHPIEVEVQVRYRSGAVAARLTPLPAQEADAAADRPHRCRLD 541

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F + +  +  GQA VFY+ +    R+LGGG+I 
Sbjct: 542 FAEPQFSITPGQAAVFYSGE----RLLGGGLIQ 570


>gi|33634533|emb|CAE20519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 431

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 204/389 (52%), Gaps = 42/389 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   + DA 
Sbjct: 54  PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 106

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+++LS   ++L
Sbjct: 107 GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWAKKEL 166

Query: 137 GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               +ATGHY R R            GD   R +++ R +D  +DQSYFL+  +Q  L  
Sbjct: 167 QLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLL-RGLDQNKDQSYFLYDLSQDVLAK 225

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDI 245
           + FPLG++ K   R  A   GL  A K +SQD+C      ++  +K    N   A +G+I
Sbjct: 226 VIFPLGELTKAETRQEAERYGLRTAKKEESQDLCL---ADHYGSMKAFLDNYLPARQGEI 282

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR         +
Sbjct: 283 VLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNCVV 342

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGV------YVDFEK 354
             +NW+        +       V++R    PV     P+     D          + F +
Sbjct: 343 GAVNWISMAPPSTTI----NVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTFNE 398

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  +  GQA VFY +D+    VLGGG+I
Sbjct: 399 KQFSITPGQAAVFYAADT----VLGGGLI 423


>gi|15806762|ref|NP_295482.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus radiodurans R1]
 gi|6459532|gb|AAF11314.1|AE002017_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus radiodurans R1]
          Length = 413

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 204/370 (55%), Gaps = 19/370 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV A+LLK  GY VIG  ++ +   K +    SCC+    Y+ARRV +
Sbjct: 54  RVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEARRVAE 113

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y+ DY E F+  ++ PF   YA G TP PCV+CN  VKF +L+   + LG   +
Sbjct: 114 QVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 173

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY++      D+ +      R  D  +DQ+YFL+ T +  L  + FP+G+++K  VR
Sbjct: 174 ATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGELEKPQVR 229

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E GL  A K +SQ+ICFV  GK  D V + +        +I    G+++G H G  
Sbjct: 230 EIAAERGLLTAQKPESQNICFV-PGKVQDFVAEHLPQAQGYIREIA--TGEVVGEHLGTQ 286

Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQ++GLG+     +  VV+LD +S+ V VG  +      +   + N+L D L E  
Sbjct: 287 FYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYLLD-LAELP 345

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R    PV   V   D +G  ++F + +  VA GQ+ V Y      +R+L
Sbjct: 346 T----ELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG----SRLL 397

Query: 379 GGGIISGSKR 388
           GGG+I+   R
Sbjct: 398 GGGLIADHAR 407


>gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 378

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 210/381 (55%), Gaps = 26/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A  D 
Sbjct: 2   MAKPNSETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGYCTAEADA 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I++ +Y  ++E+++ + V   F   Y  G TP P V CNR +KF + L+  
Sbjct: 59  EDVRRVCEQIDIPYYTVNFEKQYYDKVFAYFLEEYKRGRTPNPDVMCNREIKFGEFLNKA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V ++ K  +++ R +D  +DQ+YFL A  Q+QL    FP+G
Sbjct: 119 LDLGADYVATGHYAR----VVEENKTYKLL-RGVDSNKDQTYFLNALNQEQLSKAMFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
            + K  VR +A E GL  A K DS  +CF+ +  + + +   N   A  GD++ +  G++
Sbjct: 174 HLPKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNFKEFLS--NYLPAQSGDMIDIVTGEV 231

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRE-SLEVHRIYLR 306
            GRH+G++ YT+GQR+     G   GEP FV    L++N   V+ G +  SL    +   
Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGTGEPWFVADKDLERNILYVVQGDKHPSLYSTSLIAS 291

Query: 307 EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
            +NW+      D + +G +KC  K R  Q    V + +  DG V+V F++ +  +  GQA
Sbjct: 292 GVNWIAGA---DKMPEGPYKCTAKFRYRQPDQGVTLTKQPDGTVHVAFDEPQKAITPGQA 348

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            VFY  +      LGGG I  
Sbjct: 349 VVFYQGE----ECLGGGTIEA 365


>gi|325283230|ref|YP_004255771.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP]
 gi|324315039|gb|ADY26154.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP]
          Length = 422

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 205/365 (56%), Gaps = 19/365 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV AALLK  GY V+G  ++ +   K ++   SCC+    Y+ARRV +
Sbjct: 61  RVLCAMSGGVDSSVTAALLKDQGYSVVGAMMRFWPDDKRTETFDSCCSPDAAYEARRVAE 120

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y+ DY E+F+  ++ PF   YA G TP PCV+CN  VKF +L+   + LG   +
Sbjct: 121 QVGVPFYLLDYREQFQQHIVGPFIEEYAKGRTPNPCVNCNTKVKFDELVKKAKMLGCQYV 180

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY++    V + G+      R  D  +DQ+YFL+ T ++ L  + FP+G+++K  VR
Sbjct: 181 ATGHYVKR--VVNERGEVE--FWRGDDPRKDQTYFLWGTPREALPYILFPVGELEKPRVR 236

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
           ++A E GL  A K +SQ+ICFV  GK  D V      +  +G I  +  G+I+G H G  
Sbjct: 237 EIAAERGLLTASKPESQNICFV-PGKVQDFVAEHLPQV--QGHIREIRTGEIVGEHLGTQ 293

Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQ++GLG+     +  VV+LD  +  V VG  E      +   + N+L D L E  
Sbjct: 294 FYTLGQKKGLGLYQTHRVRHVVHLDPATQTVWVGDYEDCLWDDLSASQANYLVD-LAELP 352

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R    PV   V   D+ G  + F++ +  VA GQ+ V Y    +  R+L
Sbjct: 353 Q----RLQVQVRYRTAPVGATVLHADEHGFRLRFDEPQFAVAPGQSAVLY----DGPRLL 404

Query: 379 GGGII 383
           GGG+I
Sbjct: 405 GGGLI 409


>gi|320096111|ref|ZP_08027710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976950|gb|EFW08694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 515

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 205/388 (52%), Gaps = 27/388 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +S+ A  R GS  CC+ +D  DA R
Sbjct: 142 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPAQCRIGSRGCCSVEDAGDAAR 200

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +TI +  YV+D  E F   VI  F + Y AG TP PCV CN  VKF +L    R LG 
Sbjct: 201 AAETIGIPFYVWDLAEEFEQTVITDFIAQYRAGRTPNPCVRCNEFVKFRELADRARALGF 260

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  + +  G+ G     + R  D  +DQSY L      +L  +  PLG    K
Sbjct: 261 DAVCTGHY--AAIVEGEQGPE---LHRGADAAKDQSYVLAVMGPDELRRVVLPLGGAPSK 315

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A  +GL ++DK DS DICF+  G     + R + G A EG+IV  +G++LGRH 
Sbjct: 316 AWVRAEAERLGLGVSDKPDSYDICFIPDGDTQGFL-RAHLGSA-EGEIVTPDGRVLGRHG 373

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  NYT+GQR+GLG+      G P +V+     +++V+VG  E L V RI   +  WL  
Sbjct: 374 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLTVDRIECSDAVWLAP 433

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGV----YVDFEKSEVGVASGQACVF 367
               DA   G   + + R+   P+PV   V+R   G      V   +   GVA GQ+ V 
Sbjct: 434 DDPGDAASGGL--YAQFRAHGRPLPVASLVRRAPGGAGARFVVGLAEGARGVARGQSLVV 491

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEES 395
           Y  D    RVLG G I  + R+ A   S
Sbjct: 492 YRGD----RVLGEGTIDATSRAGAALAS 515


>gi|331006794|ref|ZP_08330060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC1989]
 gi|330419412|gb|EGG93812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC1989]
          Length = 426

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 213/379 (56%), Gaps = 26/379 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P++ RV+V MSGGVDSSV A LL++ GY V G+ ++ ++    ++    C A  D+ DA+
Sbjct: 58  PQETRVMVGMSGGVDSSVTALLLQQQGYLVEGLFMKNWDEDDGTEY---CSAKDDLADAQ 114

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RVCDT+ ++ +  ++   + + V   F   Y AG TP P + CNR +KF   L   + LG
Sbjct: 115 RVCDTLGITLHTANFAAEYWDNVFEYFLDEYKAGRTPNPDILCNREIKFKVFLDYAQVLG 174

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY+R   Y  +     R++ +  D  +DQSYFL A   +QL    FP+G+++K
Sbjct: 175 ADMIATGHYVRRDDYFNNSAGSTRLL-KGCDNNKDQSYFLHAVGGEQLAKTLFPVGELEK 233

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR LA +  L   +K DS  ICF+ + ++ D +++     A EG+IV   GQ++G+H 
Sbjct: 234 PAVRLLAEQHNLITHNKKDSTGICFIGERRFKDFLEQYLP--AQEGEIVTDKGQVIGKHA 291

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVH-RIYLREIN 309
           G++ +T+GQR+GLG+     A   P +VV   LDKN   V+ G +  L  H R+   +++
Sbjct: 292 GLMYHTMGQRQGLGIGGVKNAPDAPWYVVDKDLDKNQLIVVQGDQHPLLYHQRLTATDMH 351

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQD----PVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           W+     +DAV   F+C  KIR  Q      V V    ND  + V F++ +  V  GQ+ 
Sbjct: 352 WINPS-DQDAV---FRCHAKIRYRQADQACEVTVSRDNNDSSISVIFDEPQRAVTPGQSI 407

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  +      LGG +I+
Sbjct: 408 VLYDGE----HCLGGAVIA 422


>gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus W]
 gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus W]
          Length = 372

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 205/383 (53%), Gaps = 27/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A++ GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKKAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +    +A    FKC  K R  Q+   V VQ  D+  V +  ++    +  GQA V
Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  D      LGG  I    RS
Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364


>gi|14195297|sp|Q9RTK1|MNMA_DEIRA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 380

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 204/371 (54%), Gaps = 19/371 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV A+LLK  GY VIG  ++ +   K +    SCC+    Y+ARRV +
Sbjct: 21  RVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEARRVAE 80

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y+ DY E F+  ++ PF   YA G TP PCV+CN  VKF +L+   + LG   +
Sbjct: 81  QVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 140

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY++      D+ +      R  D  +DQ+YFL+ T +  L  + FP+G+++K  VR
Sbjct: 141 ATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGELEKPQVR 196

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E GL  A K +SQ+ICFV  GK  D V + +        +I    G+++G H G  
Sbjct: 197 EIAAERGLLTAQKPESQNICFV-PGKVQDFVAEHLPQAQGYIREIA--TGEVVGEHLGTQ 253

Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQ++GLG+     +  VV+LD +S+ V VG  +      +   + N+L D L E  
Sbjct: 254 FYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYLLD-LAELP 312

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R    PV   V   D +G  ++F + +  VA GQ+ V Y      +R+L
Sbjct: 313 T----ELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG----SRLL 364

Query: 379 GGGIISGSKRS 389
           GGG+I+   R 
Sbjct: 365 GGGLIADHARE 375


>gi|227486632|ref|ZP_03916948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235344|gb|EEI85359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 367

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 206/372 (55%), Gaps = 24/372 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++    +   G C A +D  DA
Sbjct: 3   DKKDIKVIVGISGGVDSSVAALLLKEEGYDVTGIFMKNWDD---TDENGFCTAEEDFEDA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + L
Sbjct: 60  VAVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKNL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+Q+ D+ FP+GD++
Sbjct: 120 GADYLATGHYARVDR---TDGETK--MLRGLDNNKDQTYFLSQLSQEQIKDVLFPVGDLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A++ GL  A+K DS  ICF+ +  + + +       A  G+IV   G I+G+H
Sbjct: 175 KSEVREIAKKAGLATANKKDSTGICFIGERDFNEFLSHYLP--AQPGNIVDTEGHIMGKH 232

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEV-HRIYLREINWLG 312
           +G++ +TIGQRRGLG+   GE  FV    L+KN   V  G    L   +++Y  E + + 
Sbjct: 233 DGLMYHTIGQRRGLGIGGEGEAWFVYGKDLEKNELLVCQGKNNPLLFSNKLYGSEFSTIS 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D          F C  K R  Q  +   V+   DG V V ++K++  V  GQA VFY  +
Sbjct: 293 D----KECPKEFDCTAKFRYRQADIKAHVKVLGDGKVEVTYDKTKA-VTPGQAAVFYDGE 347

Query: 372 SNEARVLGGGII 383
                 LG  II
Sbjct: 348 V----CLGSAII 355


>gi|320101712|ref|YP_004177303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Isosphaera pallida ATCC 43644]
 gi|319748994|gb|ADV60754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Isosphaera pallida ATCC 43644]
          Length = 401

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 203/379 (53%), Gaps = 20/379 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+AMSGGVDSSV A LLK  GYDV+G+ ++   +    ++R  +CC+  D  DA+ V 
Sbjct: 5   RVVLAMSGGVDSSVAAGLLKNQGYDVVGLFMRTGVHFDDPTRRAKTCCSQFDALDAQAVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +++  +  D+E  F   ++  F   Y  G TP PCV CN  +KF  L +  +++GAD 
Sbjct: 65  DRLDIPFHALDFEADF-GRIMEDFTEEYLRGRTPNPCVMCNIWLKFGKLWAYGKKVGADF 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    V D+  R RI  R +D  +DQSY L    ++ L  +  P+G   KE +
Sbjct: 124 VATGHYAR---VVQDESGRPRI-ARGVDRAKDQSYVLSGVRREILQRMLLPVGGFTKEEI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  AR+  L +  K+DSQ+ICF+    Y   ++     +   G++V  +G+++G H+G  
Sbjct: 180 RAKARDWNLPVHSKADSQEICFIPDHDYVKFIRERRPNLETAGEVVDESGRVVGTHDGYE 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQR+GL +A GEP +V+ +D    +V+VG R +L    +     NW  D      V
Sbjct: 240 GFTVGQRKGLKIAFGEPRYVIQIDPRRRQVVVGDRTALVKPGLIADRFNWHLDPPEPGQV 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND--------DGVYVDFEKSEVGVASGQACVFYTSDS 372
              ++   +IRS    VP  ++R +        + V V F + +  +  GQ    Y  D 
Sbjct: 300 ---WEVVAQIRSQHAGVPALLERLEPSARSEGGERVVVRFAEPQSAITPGQVVTLY--DC 354

Query: 373 NEARVLGGGIISGSKRSDA 391
            E RV+GGG I     +DA
Sbjct: 355 YE-RVVGGGWIERPLEADA 372


>gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2]
 gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2]
          Length = 373

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+  
Sbjct: 58  EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V +DG  R  + R +D  +DQ+YFL A +Q QL    FP+G
Sbjct: 118 LDLGADYVATGHYARV---VEEDG--RFTLLRGVDSNKDQTYFLNALSQAQLSRTMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NG 250
            + K  VR +A   GL  A K DS  +CF+ +  +    K   +G   A  GD+V +  G
Sbjct: 173 HLPKPEVRRIAEAAGLYTAKKKDSTGVCFIGERNF----KEFLSGYLPAKGGDMVDIATG 228

Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPR-ESLEVHRIY 304
           ++ GRH+G++ YT+GQR+     G   GEP FV    L+KN   V+ G R  SL    + 
Sbjct: 229 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLI 288

Query: 305 LREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
             ++NW+      DA   G F+C  K R  Q    V +Q   DG V+V F+  +  +  G
Sbjct: 289 ATDVNWIEGA---DARPSGEFRCTAKFRYRQPDQQVTLQWLPDGTVHVVFDIHQKAITPG 345

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA VFY  +    R LGGG I
Sbjct: 346 QAVVFYDGE----RCLGGGTI 362


>gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coahuilensis m4-4]
          Length = 371

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 201/377 (53%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVANQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +LGAD LATGHY  +  R     DG+ +  M R  D  +DQ+YFL   +Q  L  + FP
Sbjct: 118 MKLGADYLATGHYAQVEER-----DGEIK--MLRGKDENKDQTYFLNQLSQDVLKKVLFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G + K  VR++A+E GL  A K DS  ICF+ +  + + + +     A  G +  L+G+
Sbjct: 171 IGSLDKSRVREIAKEAGLATATKKDSTGICFIGERNFKEFLGQYLP--AQPGTMETLSGE 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           + G+H G++ +TIGQR GLG+   GEP F V  D   + + V      +SL    I   +
Sbjct: 229 VKGQHEGLMYHTIGQRHGLGIGGAGEPWFAVGKDLERNVLFVEQGFDHDSLYSTSILATD 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           I+W  D   E      F C  K R  Q    V V+  D+  V V F++    V  GQA V
Sbjct: 289 ISWTSDFPKEQE----FHCTAKFRYRQSDNSVTVKLLDNNKVEVIFDEPIRAVTPGQAVV 344

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGGG I
Sbjct: 345 FYDGDV----CLGGGTI 357


>gi|21674668|ref|NP_662733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium tepidum TLS]
 gi|81790728|sp|Q8KBD3|MNMA_CHLTE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21647873|gb|AAM73075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium tepidum TLS]
          Length = 366

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 196/369 (53%), Gaps = 27/369 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V++ +SGGVDS+V A LL + GY V G+ +++ ++ + +              A R+ D
Sbjct: 6   HVIIGLSGGVDSAVAACLLIKQGYHVTGLNIRVLDTPEDTPTLAP--------SAMRISD 57

Query: 82  TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +      VF  +   +F   V+  F   Y AG TP PC+ CN+ +K+  L    R L AD
Sbjct: 58  SEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLRAD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R+ L    D   R  + + +D E+DQSYFL+  TQ +L    FPLG   K  
Sbjct: 118 LVATGHYARTEL---RDAVTR--LLKGVDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRH 256
           VR+LAR  G+  A+K +SQ+ICFV    Y   +     G+      G+IV   G+++G H
Sbjct: 173 VRELARSFGVHAAEKKESQEICFVPHDDYCAYLANAIPGLEARVAGGEIVDQAGKVIGHH 232

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YTIGQRRGLGV+ GEP++V  +D   +R+ VG +  LE   +    +NW+G    
Sbjct: 233 RGYPFYTIGQRRGLGVSTGEPVYVTEIDAEHNRIHVGSKADLECRSLIASGMNWIGIATP 292

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           + +    F+   +IR         ++  DD   +V F + + GVA GQA VFY  D    
Sbjct: 293 DKS----FEAEARIRYRDRQSACMIEPMDDNRAWVSFREPKQGVACGQAVVFYDGD---- 344

Query: 376 RVLGGGIIS 384
            VLGGGII+
Sbjct: 345 EVLGGGIIA 353


>gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 365

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 204/374 (54%), Gaps = 18/374 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G+C A QD  D RRVC+
Sbjct: 4   RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVCE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E  +   V   F   +  G TP P V CNR +KF +LL+    LGAD L
Sbjct: 61  QIGIPYYGVNFEREYEERVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDLGADYL 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R    +DG     + R  D  +DQ+YFL   TQ  L    FP+G + K  VR
Sbjct: 121 ATGHYAQVR--KDEDGT--VALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL +A K DS  ICF+ +  +   +++     A  G I  ++G++LG H+G++ 
Sbjct: 177 QIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLMY 234

Query: 262 YTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFE 317
           YTIGQR+GL   G+   +P     +DK+ +R ++   +  +  R+Y R +       + E
Sbjct: 235 YTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALTADTVSFVAE 294

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 F+C  K R  QD  PV V+   +D   V F++ +  +  GQ+ VFY  +     
Sbjct: 295 RPPAKRFRCTAKFRYRQDEQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGEV---- 350

Query: 377 VLGGGIISGSKRSD 390
            LGGGII+  +  D
Sbjct: 351 CLGGGIIASREPVD 364


>gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2053A-b]
 gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 60-B]
 gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2053A-b]
 gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 60-B]
          Length = 375

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 201/379 (53%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    S   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D+     +M RP D  +DQ+YFL   TQ+QL    FPL D+ K  V
Sbjct: 124 IAMGHYAKT---VTDENGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H+G++
Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR GLG+   +    P FVV  +   + +IV      E L    +   E+++   
Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVSFFTG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
               D  +    C  K R  Q  V V V  N D   V+V+F++    V  GQA VFY  +
Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVFYDGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II  + R +
Sbjct: 355 ----ECLGGAIIDKAYRGN 369


>gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulovorans 743B]
 gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B]
 gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulovorans 743B]
          Length = 373

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 139/390 (35%), Positives = 209/390 (53%), Gaps = 23/390 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K  K+++VV+ +SGGVDSSV A  LK  GYDVIGV +   N+       G C + QD 
Sbjct: 1   MEKENKNIKVVLGVSGGVDSSVAALELKNQGYDVIGVFM---NNWDDEDENGVCTSVQDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D R+VCD+I+V +Y  ++++ + + V   F + Y +G TP P V CN+ +KF   L   
Sbjct: 58  EDVRKVCDSISVPYYSVNFQKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDFA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +A GHY +       DG+ +  + R  D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 LTVGADYIAMGHYAQVDF---RDGEYK--LLRAADENKDQTYFLCKLNQYQLSKSMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR+ ARE  L  A K DS  +CF+ +  +   +   N   A  G ++ L+G ++
Sbjct: 173 HLRKPEVREKAREANLVTATKKDSTGVCFIGEKNFRQFLN--NYLPAKSGPMMTLDGNVM 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREIN 309
           G H G+++YT+GQR+GLG+   GEP FVV   L KN   V+ G ++  L  + +   E++
Sbjct: 231 GEHIGLMHYTLGQRKGLGIGGAGEPWFVVDKDLKKNILYVVQGEQDPRLYSYGLTAVEVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+     E      F C  K R  Q    V V QR D+   V+F + +  +  GQ  VFY
Sbjct: 291 WIS----EKEKPKTFNCTAKFRYRQKDQGVIVHQREDNTCIVEFIEPQKAITPGQIVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
             D      LGGG I    +S    +++L+
Sbjct: 347 DGD----ECLGGGTIDKYYKSKQHLQAVLN 372


>gi|330836254|ref|YP_004410895.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM
           17374]
 gi|329748157|gb|AEC01513.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM
           17374]
          Length = 357

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 200/376 (53%), Gaps = 28/376 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCC----AGQDVYD 75
           M+++V MSGG+DSSV A LLK+ GY+VIG T+ ++      +   G+ C      +++ +
Sbjct: 1   MKILVGMSGGIDSSVAAWLLKQQGYEVIGATMSIWKEGTPYNGPAGNSCYQPETQEELAE 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            + +C  I + H V D ++ + + V+  F + Y AG TP PCV CN  +KF  L+   R+
Sbjct: 61  IQEICRKIGIPHVVVDCQDMYEDIVLKNFRAEYLAGRTPNPCVWCNSKIKFGALIDFARK 120

Query: 136 LGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            G   D  ATGHY R      D    R  + R +DL +DQ+YFL   TQ+QL  + FPLG
Sbjct: 121 SGIEFDKFATGHYARVDF---DKKTGRYRLRRAVDLHKDQTYFLHRLTQEQLSSVIFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           DM K+ VR +  E G     + +SQD  C    G Y D++  +      +G+I+   G +
Sbjct: 178 DMLKKDVRKIDEEQGFHAVGQEESQDFYC----GDYTDLLGVVPG----KGNIIDRQGTV 229

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G+ NYTIGQR+GLG+A   PL+VV L   S+ V+VG  E     R+ + +++W  
Sbjct: 230 MGTHTGVWNYTIGQRKGLGIASDRPLYVVELRPGSNEVVVGHEEDTLHTRVVIEDLSWSA 289

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSD 371
               +       +C  +IRS+ +P    V   +D   V  F  +      GQ+ V Y  D
Sbjct: 290 VAALDTP----RECVARIRSASNPQMAMVSPGEDNTLVISFTGAVKAATPGQSLVVYDGD 345

Query: 372 SNEARVLGGGIISGSK 387
           +    VL GGIIS ++
Sbjct: 346 T----VLCGGIISSAR 357


>gi|311898474|dbj|BAJ30882.1| putative tRNA-specific 2-thiouridylase MnmA [Kitasatospora setae
           KM-6054]
          Length = 377

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 199/376 (52%), Gaps = 24/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA     G++V GV L L  S   S R G+  CC  +D  DARR
Sbjct: 16  LRVLAAMSGGVDSAVAAARAVEAGHEVTGVHLAL-ASNPQSFRTGARGCCTLEDSRDARR 74

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERFR  VI  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 75  AADVIGIPFYVWDLAERFREDVIDDFVAEYAAGRTPNPCLRCNEKIKFAALLDKAVALGF 134

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +R+    DG R   + R  D  +DQSY L      QL    FPLGD  K+
Sbjct: 135 DAVCTGHY--ARIVDHPDGTRE--LHRAADAAKDQSYVLGVLDADQLAHSLFPLGDTTKD 190

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHN 257
            +R  A   GL +A K DS DICF+  G     + +R+       GDI+  +G  LG H+
Sbjct: 191 VIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAERLGTA---PGDILDADGTKLGEHD 247

Query: 258 GIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +TIGQR+GL      A G+P +V+ +    + V VGP E L+VH +      W G 
Sbjct: 248 GAYGFTIGQRKGLRLGRPAADGKPRYVLDISPVDNTVTVGPVEGLDVHALTAIRPRWCG- 306

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A  +G +   ++R+  + VPV     +D ++V  +    G+A GQA V Y    +
Sbjct: 307 ---TPAAGEG-RYTAQLRAHGEEVPVTAVLGEDELHVRLDTPARGIAPGQAVVLY----D 358

Query: 374 EARVLGGGIISGSKRS 389
             RV+G   I+ ++R+
Sbjct: 359 GTRVVGSATIASTERA 374


>gi|296393981|ref|YP_003658865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Segniliparus rotundus DSM 44985]
 gi|296181128|gb|ADG98034.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Segniliparus rotundus DSM 44985]
          Length = 375

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 148/380 (38%), Positives = 193/380 (50%), Gaps = 36/380 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDA 76
           M+V+ AMSGGVDS+V AA     G+DV GV L L     N+R  S+    CC+ +D  DA
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALSRNPDNTRGGSR---GCCSVEDSRDA 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D + +  YV+D+ E F   VI  F ++YA G TP PCV CN  +KF+ LL     L
Sbjct: 58  RRAADMLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVAL 117

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R       DG   R   R +D ++DQSY L   T QQL    FP+GD  
Sbjct: 118 GFDKVATGHYARL------DGTTLR---RAVDADKDQSYVLAVLTAQQLSRAMFPVGDTP 168

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--------HL 248
           K  +R+ A   GL +A K DS DICF+  G   D    + A IA+             H 
Sbjct: 169 KPRIREEAERRGLAVAHKPDSHDICFIPSG---DTKAFLGARIAVRSGAAARPGEFRDHR 225

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G +LG H+G I +T+GQRRGL +      G P +V  ++  +  V VG  E L V  I 
Sbjct: 226 TGAVLGHHDGAIGFTVGQRRGLRLGNPTGDGVPRYVTAVEPETGVVRVGTMEDLRVFSIS 285

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           +R   W G      A    F C V+IR+     P  V+    G  V+ ++    VASGQ 
Sbjct: 286 VRTAVWSGG----AAPAAAFPCVVQIRAHGGFAPARVRAAGAGFEVELDEPLEAVASGQT 341

Query: 365 CVFYTSDSNEA-RVLGGGII 383
            V Y  D     RV+G G+I
Sbjct: 342 VVLYDPDPVLGDRVIGSGVI 361


>gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 364

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 205/371 (55%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            ++V MSGGVDSSV A LL + GY V G+ ++ +         G C A +D+ DA+ VC+
Sbjct: 6   HIIVGMSGGVDSSVAALLLIQAGYRVEGLFMKNWEE---DDEPGYCAAAEDLADAKAVCE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   RQLGAD +
Sbjct: 63  VLEIPLHKVNFSADYWHRVFSHFLDEYQAGRTPNPDILCNKEIKFRAFLDYARQLGADGI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +G DG+   ++    D  +DQ+YFL+   Q+QL    FP+G+++K  VR
Sbjct: 123 ATGHYAR----IGRDGESYTLLAG-RDANKDQTYFLYTLGQEQLSKSLFPIGELEKPRVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           DLAR  GL +  K DS  ICF+ + ++ D ++      A  G+IV   G  LG H G++ 
Sbjct: 178 DLARAHGLPVFAKKDSTGICFIGERRFRDFLQTYLP--ARPGEIVDPEGNRLGEHQGLMY 235

Query: 262 YTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIV--GPRESLEVHR-IYLREINWLGD 313
           YT+GQR+GLG+      GE P +VV  D   +R+IV  G    L  HR +  ++++W+  
Sbjct: 236 YTLGQRQGLGIGGVHDAGEAPWYVVDKDMAHNRLIVAQGHDHPLMHHRGLEAQDLHWVSG 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
               +A  + F C  +IR  Q      V+ + DG V V F++++  +A GQ+ VFY  D 
Sbjct: 296 ----EAPREAFSCRARIRHRQPLQACRVEPHADGRVRVLFDEAQRAIAPGQSVVFYQED- 350

Query: 373 NEARVLGGGII 383
              R LGGGII
Sbjct: 351 ---RCLGGGII 358


>gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planococcus donghaensis MPA1U2]
 gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planococcus donghaensis MPA1U2]
          Length = 371

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 200/372 (53%), Gaps = 17/372 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKAPQDTRVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY  +++   ++G+ +  M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 LSLGADYLATGHY--AQVEHAENGETK--MLRGKDNNKDQTYFLNQLDQHQLSKVMFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K+ VR++A E  L  A K DS  ICF+ +  + + + +     A  G +  L G  +
Sbjct: 174 HMEKKKVREIALEAELATATKKDSTGICFIGERNFKEFLGQYLP--AQPGQMETLEGVKM 231

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G H+G++ YTIGQR+GLG+   G+P FV+  D   + + VG  +++    ++   +  + 
Sbjct: 232 GTHDGLMYYTIGQRQGLGIGGAGDPWFVIGKDLERNVLYVG--QNIHHDALFSDSLTAVN 289

Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                +    G  +C  K R  Q  V V V+   +   V F +    +  GQA VFY  +
Sbjct: 290 LSFTSNTPPSGILECTAKFRYRQQDVGVSVEFKGESAIVTFAEPVRAITPGQAVVFYDGE 349

Query: 372 SNEARVLGGGII 383
                 LGGG I
Sbjct: 350 ----ECLGGGTI 357


>gi|213964680|ref|ZP_03392880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium amycolatum SK46]
 gi|213952873|gb|EEB64255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium amycolatum SK46]
          Length = 379

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 210/388 (54%), Gaps = 30/388 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA     G++V+GV L L    + S R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARALAAGHEVVGVHLALSKDPQ-SVRAGSRGCCSLEDSGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD + +  YV+D+ ERF+  V+  F  SY  GETP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCDELGIPFYVWDFSERFKEEVMDDFYDSYERGETPNPCLRCNERIKFAALLERGLALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY      +GDDG    ++ R  D+++DQSY L    ++QL    FP+GD +K 
Sbjct: 120 DAVVTGHYA----LLGDDG----LLRRGRDMKKDQSYVLGVLDREQLSHSLFPVGDTEKP 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--HLNGQILGRH 256
            +R+ AR+MGL  A+K DS DICF+  G   +    + A I     ++     G  +  H
Sbjct: 172 EIREEARDMGLGTANKPDSYDICFIPDG---NTQAFLGAKIGRRPGLIVDKETGDTVAEH 228

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+  +TIGQR+G+G+    A G+P +V  +D +++ V +G  + L V+ +      WL 
Sbjct: 229 DGVYGFTIGQRKGIGLPGPMADGKPRYVTGIDADTATVTIGTADDLNVNVLQADRAIWLA 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDP----VPVFVQRNDD-----GVY-VDFEKSEVGVASG 362
           +        +  K  V++R+   P    + V    +DD     G + +   +   GVA G
Sbjct: 289 NPDEVLVASEAGKLQVQVRAHGRPIDCRIEVLAGPDDDVTGRGGTFRLHLSEPLRGVAPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSD 390
           QA V Y +D+    VLG G I  + R +
Sbjct: 349 QAAVLYHTDTAGDYVLGSGTIVSTAREE 376


>gi|284032792|ref|YP_003382723.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kribbella flavida DSM 17836]
 gi|283812085|gb|ADB33924.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kribbella flavida DSM 17836]
          Length = 372

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/384 (39%), Positives = 200/384 (52%), Gaps = 29/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA +   G++V+GV L L  + + S R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARMAEAGHEVVGVHLALSRNPQ-SYRSGARGCCTIEDSRDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERF   V+  F + YAAG TP PC+ CN  VKFS +L     L  
Sbjct: 60  AADVIGIPFYVWDLAERFHADVVEDFVAEYAAGRTPNPCLRCNEKVKFSAVLERALALDF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +++     G   R + R +D  +DQSY L   TQ+QL    FPLGD  K 
Sbjct: 120 DAVATGHY--AQIVETPAG---RELHRAVDQAKDQSYVLGVLTQEQLRHAFFPLGDTPKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +A K DS DICF+  G     + +   G A  GDIV  NG  LG H G
Sbjct: 175 EIRAEAERRGLSVAAKPDSHDICFIADGNTPGFLSK-QLGEA-PGDIVDSNGTKLGEHKG 232

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQR+GL +    A G+P FV+ +      V VG RE L V  +   +  W G  
Sbjct: 233 THGFTVGQRKGLRIGTPAADGKPRFVLDISPVDRTVTVGSREELAVESLTASKPRWCGPV 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E   V       ++R+  D V V  +   D V+V F++    VA GQA V Y    + 
Sbjct: 293 PTETLHVK-----AQLRAHGDEVAVTARVEGDQVFVTFDEPTAAVAPGQAVVLY----DG 343

Query: 375 ARVLGGGIISGSKRSDAVEESLLS 398
            RV+G   I      D V  +LLS
Sbjct: 344 TRVVGSATI------DTVARALLS 361


>gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032]
 gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus ATCC 7061]
 gi|166991121|sp|A8FFP0|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus SAFR-032]
 gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus ATCC 7061]
          Length = 372

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 201/375 (53%), Gaps = 21/375 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKRPEDTRVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     GD+ K    M R +D  +DQ+YFL   TQ+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARVDR-TGDEVK----MLRGLDANKDQTYFLNQLTQEQLDKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K+ VR+LA+E  L  A K DS  ICF+ +  +   + +     A  G +  ++G++ 
Sbjct: 173 DLEKKRVRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGVMQTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G H+G++ YTIGQR+GLG+   G+P FVV  D   + + V   +      +Y   I+ + 
Sbjct: 231 GEHDGLMYYTIGQRQGLGIGGSGDPWFVVGKDLEQNILFV--EQGFHNPLLYSESISAVN 288

Query: 313 DGLFEDAVV---DGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
                  +V       C  K R  Q+   V V+   +    V F++    V  GQA VFY
Sbjct: 289 ISWTRPHIVGENGELTCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFY 348

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 349 DGD----ECLGGGTI 359


>gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria ivanovii FSL F6-596]
 gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria ivanovii FSL F6-596]
          Length = 371

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 203/377 (53%), Gaps = 23/377 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  RV
Sbjct: 7   DIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYEDVIRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L     LGAD
Sbjct: 64  ANQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q+QL  + FPLG M+K  
Sbjct: 124 FVATGHYAQVK-QVGDEIE----LLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKSE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + GL  A+K DS  ICF+ +  +   +       A  G +  LNG++LG+H+G+
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLNGEVLGKHDGL 236

Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           + YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I++  +  
Sbjct: 237 MYYTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHETLYSDSLIATDISFTTNA- 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              A     +C  K R  Q    V V  R+D+   V F +    +  GQA VFY  D   
Sbjct: 296 ---AKPKTIECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFYDGDI-- 350

Query: 375 ARVLGGGIISGSKRSDA 391
              LGGG I    ++ A
Sbjct: 351 --CLGGGTIDTVWKNGA 365


>gi|323704672|ref|ZP_08116250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536134|gb|EGB25907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 369

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 205/372 (55%), Gaps = 24/372 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++++VVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    S   G C A +D  D  R
Sbjct: 6   QNVKVVVGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDEEDDS---GYCTAAEDYEDVVR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD I + +Y  ++ + + + V   F + Y +G TP P V CN+ +KF   L  + ++GA
Sbjct: 63  VCDKIGIPYYSINFTKEYWDRVFQYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFSMKIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       DG  +  M + +D  +DQ+YFL    Q+QL    FP+G + K 
Sbjct: 123 DYIATGHYARIEHI---DGHYK--MLKGVDKNKDQTYFLCELGQKQLSKTMFPIGHLDKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++AR+ GL  ADK DS  ICF+ + K+ + + +     A  G+I  L+G++LGRH+G
Sbjct: 178 EVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVLGRHDG 235

Query: 259 IINYTI---GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           ++ YT+         GV  GEP FVV  D  ++ + V       +L  + ++ + +NW+ 
Sbjct: 236 LMFYTLGQRRGIGIGGVGTGEPWFVVDKDVENNILYVAQGDKNPALYSYGLFTKNVNWI- 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           DG   D   D  +C  K R  Q    V V + D+G  V F+K +  V  GQ  VFY  + 
Sbjct: 295 DG---DMNFDELRCKAKFRYRQPDQDVMVFKKDNGYLVVFDKPQRAVTPGQFVVFYDGEY 351

Query: 373 NEARVLGGGIIS 384
                LGGG+I 
Sbjct: 352 ----CLGGGVIE 359


>gi|257054918|ref|YP_003132750.1| tRNA-specific 2-thiouridylase MnmA [Saccharomonospora viridis DSM
           43017]
 gi|256584790|gb|ACU95923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharomonospora viridis DSM 43017]
          Length = 363

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 196/369 (53%), Gaps = 23/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +++  + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCSLEDSNDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F   YAAG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADILGIPFYVWDFAERFTEEVVETFIGEYAAGRTPNPCVTCNEKIKFEALLEKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +RL V D     R   R  D  +DQSY L +   +QL    FPLGD +K 
Sbjct: 120 DAVCTGHY--ARLSVVDGVPELR---RSADESKDQSYVLASLKPEQLRHAMFPLGDSRKP 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHL-NGQILGR 255
            VR  A E GL +A K DS DICF+  G  K F + KR+       GD+V    G +LGR
Sbjct: 175 EVRAEAAERGLPVARKPDSHDICFIPDGDTKAF-LEKRLG---QRPGDLVDAETGAVLGR 230

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G+  +TIGQR+GLG+      G+P +V+ L+  S  V VG  + L V+RI      W 
Sbjct: 231 HTGVHGFTIGQRKGLGIDAPAPDGKPRYVLALEPVSGTVKVGSGDKLAVNRIEGERPIWP 290

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                E  +    +C  ++R+     P   +  DD V V   +   GVA GQ  V Y  D
Sbjct: 291 S----ERPLAGPTECVAQVRAHGGTAPAVAEVVDDRVVVHLREPLRGVAPGQVVVLYRED 346

Query: 372 SNEARVLGG 380
           +    V+ G
Sbjct: 347 AEAGDVVLG 355


>gi|73662449|ref|YP_301230.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123642746|sp|Q49Y59|MNMA_STAS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72494964|dbj|BAE18285.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 370

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 202/370 (54%), Gaps = 22/370 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RVVV MSGGVDSSV A +LK  GYDVIG+ ++ +++   +   G C A +D  D   
Sbjct: 4   KDTRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDN---TDENGYCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  +DG     M R +D  +DQ+YFL   +Q QL  + FP+GD++K+
Sbjct: 121 DYVATGHYARVRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDIEKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + + +     A  G++  L G+ +G H G
Sbjct: 177 EVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMRTLKGEKIGTHAG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314
           ++ YTIGQR GLG+   G+P FVV   LD N   V  G   ++L    +   +I+++ D 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVNDV 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             E    +GF+C  K R  Q    VFV+  N++ + V F +    +  GQ+ V Y  D  
Sbjct: 295 DLE----NGFECTAKFRYRQKDTKVFVKNENENAIRVIFNEPVRAITPGQSVVLYDGDV- 349

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 350 ---CLGGATI 356


>gi|94984899|ref|YP_604263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus geothermalis DSM 11300]
 gi|205816613|sp|Q1J090|MNMA_DEIGD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94555180|gb|ABF45094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus geothermalis DSM 11300]
          Length = 381

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 206/374 (55%), Gaps = 19/374 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDSSV AALLK  GY VIG  ++ +   K      +CC+    Y+ARRV +
Sbjct: 10  RVLCAMSGGVDSSVTAALLKDAGYQVIGAMMRFWPDDKRVDTFDTCCSPDAAYEARRVAE 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y+ DY E+F++ ++ PF S YA G TP PCV+CN  VKF +L+   + LG   +
Sbjct: 70  QVGVPFYLLDYREQFQHHIVGPFLSEYAQGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 129

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY++      +DG       R  D  +DQ+YFL+ T ++ L  + FP+G+++K  VR
Sbjct: 130 ATGHYVKR--VEREDGSVE--FHRGDDPRKDQTYFLWGTPREALPFILFPVGELEKPRVR 185

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E GL  A K +SQ+ICFV  GK  D V + +     L  +I    G+++G H G  
Sbjct: 186 EIAAEKGLLTARKPESQNICFV-PGKVQDFVAEHLPQRQGLIREI--RTGEVVGEHLGTQ 242

Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQ++GLG+     +  VV+LD  ++ V VG  E      +     N+L D      
Sbjct: 243 FYTLGQKKGLGLYQTHRVRHVVHLDPETNTVWVGDYEDCLWTGLKAEGANYLLDLAELPR 302

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V+     V++R    PV   V   D+ G  + FE+ +  VA GQ+ V Y       R+L
Sbjct: 303 EVE-----VQVRYRTKPVRATVLHADEHGFELQFEEPQFAVAPGQSAVLYAG----TRLL 353

Query: 379 GGGIISGSKRSDAV 392
           GGG+I+   R+  V
Sbjct: 354 GGGLIADHARNLPV 367


>gi|270291444|ref|ZP_06197666.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
 gi|304385157|ref|ZP_07367503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pediococcus acidilactici DSM 20284]
 gi|270280290|gb|EFA26126.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
 gi|304329351|gb|EFL96571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pediococcus acidilactici DSM 20284]
          Length = 377

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 200/379 (52%), Gaps = 34/379 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDD---TDENGYCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D    + + R  D  +DQ+YFL   + +QL  + FPLG M K  VR
Sbjct: 125 ATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMVKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A+E GL + DK DS  ICF+ +  + + +   N   A  G ++ L+G++ G H G++ 
Sbjct: 181 AIAKEAGLAVYDKKDSVGICFIGEKNFREFLS--NYLPAKPGKMMTLDGEVKGEHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGPRESLEVHRIY--------LREIN 309
           YTIGQRRGLG+  G    EP FVV  D + + + VG  +  +   +Y        +  +N
Sbjct: 239 YTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVG--QGFDNPHLYAASLDASDMHFVN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367
            LG+    D     F+C  K R     VPV V  +DD   V VDF++    +  GQA V 
Sbjct: 297 RLGEERGHD-----FRCTAKFRYRAKDVPVTVHFSDDFSKVTVDFDEPARAITPGQALVL 351

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y  +      +GGGII  +
Sbjct: 352 YDGE----ECIGGGIIDAA 366


>gi|189347539|ref|YP_001944068.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium limicola DSM 245]
 gi|189341686|gb|ACD91089.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium limicola DSM 245]
          Length = 358

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 194/366 (53%), Gaps = 25/366 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCD 81
           VV  +SGGVDS+V A LL R GY V G+ +++ ++       + S     D  D +    
Sbjct: 7   VVTGISGGVDSAVAACLLHRQGYRVTGINIRILDTPVDNPSLQPSRLVISDHPDFQIPVF 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++N+S   FD       AVI  F   Y +G TP PC+ CN+T+K+  LL   R L A+++
Sbjct: 67  SLNLSAKFFD-------AVIRYFRDDYLSGRTPNPCMVCNKTIKWYGLLEAARMLEAEMI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+      DG+ R  + +  D E+DQSYFL+  +Q  L     PLG + K  VR
Sbjct: 120 ATGHYARTSF---SDGRYR--LMKGCDPEKDQSYFLWMLSQADLSKTLLPLGALTKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258
           +LAR  G+  A+K +SQ+ICFV    Y   +K    G+  E   G+IV  +G +LG H G
Sbjct: 175 ELARTFGVRAAEKKESQEICFVPNDDYCSYLKNSIPGLEQEVAGGEIVDADGNVLGHHRG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+   +PL+V  LD   +R+ VG +  LE   +    +NW+G     +
Sbjct: 235 YPFYTIGQRRGLGIPAPKPLYVTGLDARHNRIRVGGKADLECRALTASGLNWIGI----E 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A    F+   +IR      P  V+    +   V FE  + GV  GQA VFY SD     V
Sbjct: 291 APSSPFETAARIRYRDKESPCTVEPIGGNKATVTFETPKHGVTPGQAVVFYRSD----EV 346

Query: 378 LGGGII 383
           LGGG I
Sbjct: 347 LGGGFI 352


>gi|226356219|ref|YP_002785959.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus deserti VCD115]
 gi|226318209|gb|ACO46205.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus deserti VCD115]
          Length = 391

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 201/382 (52%), Gaps = 35/382 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  RV+ AMSGGVDSSV AALLK  GY V+G  ++ +   K      +CC+    Y+AR
Sbjct: 16  PQGERVLCAMSGGVDSSVTAALLKDQGYQVVGAMMRFWPDDKRVDTFDTCCSPDAAYEAR 75

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + + V  Y+ DY E+F+  ++ PF   YA G TP PCV+CN  VKF +L+   + LG
Sbjct: 76  RVAEQVGVPFYLLDYREQFQRHIVGPFLDEYARGRTPNPCVNCNTKVKFDELVKKAKMLG 135

Query: 138 ADVLATGHYIRS--------RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +ATGHY++           + GDD +            +DQ+YFL+ T +  L  + 
Sbjct: 136 CRYVATGHYVKRVENAAGEVEFWRGDDPR------------KDQTYFLWGTPRDALPYIL 183

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL 248
           FP+G+++K  VR +A E GL  A K +SQ+ICFV  GK  D V + +        +I   
Sbjct: 184 FPVGELEKPQVRQIAEERGLLTARKPESQNICFV-PGKVQDFVAEHLPQATGFIREIA-- 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +G+++G H G   YT+GQ++GLG+     +  VV+LD  ++ V VG  E      +    
Sbjct: 241 SGEVVGEHLGTQFYTLGQKKGLGLYQSHRIRHVVHLDPATNTVWVGDYEDCMWTGLRASS 300

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
            N+L D    D   D     V++R    PV    V  ++ G  ++F + +  VA GQ+ V
Sbjct: 301 ANYLLD--LRDLPQD---LEVQVRYRTAPVKARVVHADEHGFKLEFAEPQFAVAPGQSAV 355

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y       R+LGGG+I    R
Sbjct: 356 LYAG----PRLLGGGLIEDHSR 373


>gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 369

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 138/380 (36%), Positives = 211/380 (55%), Gaps = 22/380 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K+ KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++    +   G C A  D  
Sbjct: 3   NKDKKDIKVIVGVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYE 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA +VC+ I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   +
Sbjct: 60  DAVKVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAK 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD LATGHY R     G+       M R +D  +DQ+YFL   +Q Q+ D+ FP+G+
Sbjct: 120 DLGADYLATGHYARVDRSSGE-----TKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGN 174

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K+ VR +A+E  L  ADK DS  ICF+ +  + + +   N   A EG+IV  +G I+G
Sbjct: 175 LDKKEVRKIAKENNLATADKKDSTGICFIGERNFNEFLS--NYLPAKEGNIVDTDGNIMG 232

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           +H G++ +TIGQRRGLG+   GE  FV   D   + +IV      E L  +R+    ++ 
Sbjct: 233 KHYGLMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSS 292

Query: 311 L-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +GL ++     F C  K R  Q  +   V+  DDG V + ++K++  V  GQA VFY
Sbjct: 293 ISAEGLKKE-----FDCTCKFRYRQKDINSHVKILDDGKVEIRYDKTKA-VTPGQAAVFY 346

Query: 369 TSDSNEARVLGGGIISGSKR 388
             +      +   + +G KR
Sbjct: 347 DGEVCLGSCIIDEVYNGDKR 366


>gi|300781387|ref|ZP_07091241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300533094|gb|EFK54155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 361

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 195/372 (52%), Gaps = 22/372 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA L   G+DV+GV L L      ++     CC+ +D  DARRVCD + +
Sbjct: 1   MSGGVDSSVAAARLVDAGHDVVGVHLALSKDAHQTRESARGCCSLEDSADARRVCDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL    QLG D +ATGH
Sbjct: 61  PFYVWDFSDRFKEDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERAVQLGFDAIATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y    L  G    RR I     D ++DQSY L   T+ +L    FP+GD +K  +R+ A 
Sbjct: 121 YA---LIDGAGNLRRSI-----DPQKDQSYVLGVMTRDELDRCIFPVGDTEKPQIREEAA 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTI 264
             G   A K DS DICF+  G     + R    I +  G IV  +G  L  H+G   YTI
Sbjct: 173 AYGFSTASKPDSYDICFIPDGNTQAFLGR---SIGMRPGMIVDESGAELKEHDGAFQYTI 229

Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA- 319
           GQR+GL +    A G+P +V  +D  +  V VGPR +L+V  I+   +  L + +   + 
Sbjct: 230 GQRKGLNIRVPAADGKPRYVTDIDAATGTVTVGPRAALDVRTIHADRLKILHEAMSAASQ 289

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--GVASGQACVFYTSDSNEAR- 376
             D     V+IR+    V      + D   +  E +E   GVA GQA V Y  D +    
Sbjct: 290 CSDPIAAHVQIRAHGGVVSCTAHVDLDADTMTLELAEPLSGVARGQAAVLYLPDPDGQGD 349

Query: 377 -VLGGGIISGSK 387
            VLG G I G++
Sbjct: 350 VVLGSGTICGTE 361


>gi|116492933|ref|YP_804668.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Pediococcus pentosaceus ATCC 25745]
 gi|122265603|sp|Q03EZ6|MNMA_PEDPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116103083|gb|ABJ68226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 377

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 204/393 (51%), Gaps = 37/393 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVVGVFMKNWDD---TDENGYCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D    + + R  D  +DQ+YFL   + +QL  + FPLG M K  VR
Sbjct: 125 ATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMIKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL + DK DS  ICF+ +  + + +   N   A  G ++ L+G++ G H G++ 
Sbjct: 181 KVAEEAGLSVYDKKDSVGICFIGEKNFREFLG--NYLPAKAGKMMTLDGEVKGEHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGPRESLEVHRIY--------LREIN 309
           YTIGQRRGLG+  G    EP FVV  D + + + VG  +  E   +Y        +  +N
Sbjct: 239 YTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVG--QGFENSHLYAASLDASDMHFVN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367
            LG+    D     F+C  K R     VPV V  ++D   V VDF+     +  GQA V 
Sbjct: 297 KLGEERGRD-----FRCTAKFRYRAQDVPVTVHFSEDFSKVTVDFDDPARAITPGQALVL 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +      +GGGII  +  S   E+ +L  I
Sbjct: 352 YDGE----ECIGGGIIDAAYNS---EKKMLQYI 377


>gi|224476719|ref|YP_002634325.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254811461|sp|B9DNH6|MNMA_STACT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222421326|emb|CAL28140.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 370

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 197/380 (51%), Gaps = 42/380 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   QDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY + R     D      M R +D  +DQ+YFL   T +QL  + FPLG M+K 
Sbjct: 121 DYVATGHYAQVRR----DADGNVEMLRGVDNNKDQTYFLNQLTHEQLSKVMFPLGGMEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ +  + + +   N   A  GD+  LNG+ +G H+G
Sbjct: 177 EVRRIAAEQDLATAKKKDSTGICFIGERNFKEFLS--NYLPAQSGDMRTLNGKKMGTHSG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++LE + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNVLYV-EQGFHHDALYS 280

Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
           D ++             DG +C  K R  Q    V V R D+  + VDF++    +  GQ
Sbjct: 281 DYLIASDVSLVNDIDLTDGLECTAKFRYRQKDTKVTVTRIDENQIRVDFDQPVRAITPGQ 340

Query: 364 ACVFYTSDSNEARVLGGGII 383
           A V Y  D      LGG  I
Sbjct: 341 AVVLYDGDV----CLGGATI 356


>gi|300087159|ref|YP_003757681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526892|gb|ADJ25360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 359

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 203/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG----QDVYD 75
           +++VA+SGGVDS+V AAL +  GYDV G+ + +Y+  ++   K     C G    +DV D
Sbjct: 4   KILVALSGGVDSAVAAALAQESGYDVTGIIMTIYDGPESPNEKSHKHGCYGPGEEEDVKD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V   + +   VFD +  +R  ++  F + Y AG TP PCV CN+ +K   LL   R+
Sbjct: 64  AEAVAQHLGIKLQVFDLKNEYRTNILESFKNEYRAGRTPNPCVYCNQQIKLGALLDKARE 123

Query: 136 LGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            G D   + TGHY R+  +      R R++ R     +DQSYFL   +Q QL  LRFPLG
Sbjct: 124 SGLDFEFVFTGHYARTDFH--HQSNRYRLL-RARYHNKDQSYFLSRLSQAQLRILRFPLG 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D+ K+ VR LA  + L ++ K +SQ+      G Y  +V   +      G I + +G I+
Sbjct: 181 DLSKDEVRKLAERINLPVSRKEESQNFI---SGGYRQLVCSQDTS----GPIKNKSGDII 233

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+H+GI ++TIGQR GLG++  EPL+VV +D   + ++VG R +L    I + ++NW+  
Sbjct: 234 GQHSGISSFTIGQRHGLGLSSPEPLYVVQIDAPENTIVVGARSALYRDEIQVEKLNWISI 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSD 371
              E+ V    +   ++RS+  P    V  N   D V V FE  ++  A GQ  VFY  D
Sbjct: 294 SQLENPV----QLTARVRSAAVPAAAMVIPNHLTDSVTVRFEVPQMAPAPGQIAVFYEDD 349

Query: 372 SNEARVLGGGIIS 384
                V+G G+I+
Sbjct: 350 I----VVGSGVIT 358


>gi|291299863|ref|YP_003511141.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Stackebrandtia nassauensis DSM 44728]
 gi|290569083|gb|ADD42048.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Stackebrandtia nassauensis DSM 44728]
          Length = 359

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 198/366 (54%), Gaps = 25/366 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA    DG+DV GV L L +S   + R G+  CC  +D  DARR  D I 
Sbjct: 1   MSGGVDSAVAAARAVADGHDVTGVHLAL-SSNPQTFRSGARGCCTLEDSRDARRAADVIG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  ERFR  V+  F + YAAG TP PC+ CN  +KF+ +L     LG D + TG
Sbjct: 60  IPFYVWDMAERFREDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H+  +RL  G       ++ R +DL +DQSY L      QL    FPLGD  K+ VR  A
Sbjct: 120 HH--ARLADG-------VLRRSVDLGKDQSYVLAVLNAAQLSRAVFPLGDSTKDEVRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH-LNGQILGRHNGIINY 262
               L +ADK DS DICF+  G   D    +N  +  + GDIV   +G++LG H+G   +
Sbjct: 171 ARRDLAVADKPDSHDICFIADG---DTQGFLNQRLGSKTGDIVDAASGEVLGSHSGAHQF 227

Query: 263 TIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           TIGQR GLG+    A G+P +V+ +    + V VGPRE+L+VH ++     WL DG+  +
Sbjct: 228 TIGQRHGLGIGRPAADGKPRYVLSITPVDNTVKVGPREALDVHVVHADRPVWL-DGVERE 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                F+C V++R+  +     V  + D +         GVA+GQA V Y  D     VL
Sbjct: 287 GP---FECQVQLRAHGEVHDATVTSDGDTITARLHSPAKGVAAGQALVVYQPDPEGDIVL 343

Query: 379 GGGIIS 384
               I+
Sbjct: 344 ASATIA 349


>gi|114566016|ref|YP_753170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122318873|sp|Q0AZQ5|MNMA_SYNWW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114336951|gb|ABI67799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 338

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 206/364 (56%), Gaps = 28/364 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGG+DS+V A LL+  GY+V G+T+ ++  R+A ++            A R+ 
Sbjct: 1   MKVAVLMSGGIDSTVSALLLREQGYEVTGLTM-VHLEREAGEK------------AARIA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + H V D  E F++AV+  F   Y  G TP PCV CN  +KF  LL     LGAD 
Sbjct: 48  NELQIEHKVVDLREPFQSAVVDYFCREYEQGHTPNPCVKCNEEIKFGLLLKAALDLGADK 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY  +R+   D  +  R+M + +D  +DQSYFL+   QQQL  L FPLG  +KE V
Sbjct: 108 VASGHY--ARIDYDDKSQCYRLM-KGVDPRKDQSYFLYRLKQQQLSRLIFPLGGYRKEEV 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++AR   L +A++ +SQ++CF+  G Y + + R +     EG  +   G+ILGRH GI 
Sbjct: 165 REMARRYHLQLAEEKESQEVCFI-PGDYREFI-RPHVSYK-EGSFLDRTGKILGRHRGIP 221

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL V+ G PL+V+ +D   +++++G  E L    +  ++ +++    FE  +
Sbjct: 222 FYTIGQRRGLAVSAGRPLYVLKIDPEKNQILLGENEVLFSKLLRFKQNHFICSQDFELLI 281

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K   KIR +       +   +D ++ + F++++     GQ+ V+Y  D     VLG
Sbjct: 282 ----KVKAKIRYAARESEAILHCIEDDIWELVFDEAQRAATPGQSVVYYQGDY----VLG 333

Query: 380 GGII 383
           GG I
Sbjct: 334 GGTI 337


>gi|163942146|ref|YP_001647030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus weihenstephanensis KBAB4]
 gi|205812536|sp|A9VIM2|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus weihenstephanensis KBAB4]
          Length = 371

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 201/377 (53%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++   A+   G C A +D 
Sbjct: 1   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      F C  K R  Q    V VQ  D+  V +  ++    +  GQA V
Sbjct: 289 VGWVSNKAKEKE----FTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGG  I
Sbjct: 345 FYDGD----ECLGGATI 357


>gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides DSM 2048]
 gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH603]
 gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH621]
 gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH621]
 gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH603]
 gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides DSM 2048]
          Length = 376

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 201/377 (53%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++   A+   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      F C  K R  Q    V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKAKEKE----FTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGG  I
Sbjct: 350 FYDGD----ECLGGATI 362


>gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 367

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 24/373 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++    +   G C A  D  D
Sbjct: 2   KEKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + 
Sbjct: 59  AVAVSNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R+     D      +M R +D  +DQ+YFL   +Q+Q+ D+ FP+G+ 
Sbjct: 119 LGADYVATGHYARA-----DRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKDVLFPVGEF 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR++A +  L  ADK DS  ICF+ +  + + +   N   A  G+IV   G ILG+
Sbjct: 174 EKKEVREIAHKYNLATADKKDSTGICFIGERDFNEFLS--NYLPAQPGNIVDTEGHILGK 231

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINWL 311
           H+G++ +TIGQRRGLG+   GE  FV   D KN+  ++   R +  L  +++Y  E + +
Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKNNELIVCQGRNNPLLFSNKLYASEFSTI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            D        + F C  K R  Q  +   V+   +G V V ++K++  V  GQA VFY  
Sbjct: 292 SD----KKCPEEFDCTAKFRYRQKDINAHVKVLGEGKVEVTYDKTKA-VTPGQAAVFYQG 346

Query: 371 DSNEARVLGGGII 383
           +      LG  II
Sbjct: 347 EV----CLGSAII 355


>gi|256824827|ref|YP_003148787.1| tRNA-specific 2-thiouridylase MnmA [Kytococcus sedentarius DSM
           20547]
 gi|256688220|gb|ACV06022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
          Length = 416

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 204/410 (49%), Gaps = 45/410 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQD 72
           L  + + +RVV AMSGGVDS+V AA +   G++V GV L L  S +  +     CC  +D
Sbjct: 8   LPTDGRRLRVVAAMSGGVDSAVAAARMIDAGHEVTGVHLALSQSAETLRESARGCCTLED 67

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARRV D + +  YV+D  ERFR  VI  F + Y AG TP PC+ CN ++KF+ LL  
Sbjct: 68  AGDARRVADALGIPFYVWDMAERFRRDVIEDFVAEYEAGRTPNPCLRCNESIKFAALLDK 127

Query: 133 TRQLGADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              LG D +ATGHY +  + V D   +G  RR + R +D  +DQSY L      QL    
Sbjct: 128 AVALGFDAVATGHYAQV-VEVPDPAAEGGVRRELHRAVDAAKDQSYVLGVLDADQLARAH 186

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL 248
           FPLGD  K  +R+ A   G  +A K DS DICF+  G     + +R+       G+IV  
Sbjct: 187 FPLGDTTKPQIREEAARRGFSVARKPDSHDICFIADGDTRAYLAERLG---EQPGNIVDP 243

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G++LG H G   YT+GQR+GLG+ +    G P +V+  D  +++V+VGP+E L V  I 
Sbjct: 244 AGRVLGTHGGAHGYTVGQRKGLGLRVPASDGAPRYVLRTDPATNQVVVGPKEMLGVDVIR 303

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND------------------- 345
              + W G     +         ++   ++ P  V V   D                   
Sbjct: 304 ADHVRWCGPAPEGETR---LGAQIRAHGAEYPARVVVSGADASGSLLSGPGRSEPGDGEI 360

Query: 346 ------DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
                  GV V  ++   GVA GQ+ V Y    +  RV+G   I+ + RS
Sbjct: 361 AATAGHQGVTVFLDELVRGVAPGQSVVLY----DGTRVVGSATITATDRS 406


>gi|241667518|ref|ZP_04755096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 359

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   QNKKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F + Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R++  V DDG  +  + + +D  +DQ+YFL+   Q+QL    FP+GD++K 
Sbjct: 119 DYIATGHYARTK--VADDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ D + +     A +G+I   NG  +G H+G
Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLREIN--W 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+ I+  W
Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N+DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQSCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348

Query: 370 SDSNEARVLGGGII 383
           +D      LGGGII
Sbjct: 349 NDV----CLGGGII 358


>gi|310778027|ref|YP_003966360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
 gi|309747350|gb|ADO82012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
          Length = 356

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 13/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV MSGGVDSSV A LLK +GY+VIGVTL+ L +    +    +CC+  D+YDA+  C
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEEGYEVIGVTLKHLSDEDSENTNTKTCCSLDDIYDAKMAC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + HYV D  E F+  VI  F   Y+ G TP PCV C+  +K   L     +LGAD 
Sbjct: 64  FKLGIPHYVVDAVEPFKKDVIDYFIGEYSKGITPSPCVVCDEKIKIKKLAETADKLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ++TGHY     Y  + G    ++    +  +DQ+Y L+   +  L  + FPL + +K+ V
Sbjct: 124 ISTGHYCDVS-YSQELG--SHLLKLSKNSAKDQTYMLYRIGENILKRMLFPLKNFEKKKV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A+E G+ + DK DSQ ICF  +G Y +++KRI       G+ +  +G ILG+H G  
Sbjct: 181 RGIAKEAGISVHDKKDSQGICFAPEG-YKELLKRILGEKIKPGNFITRDGHILGQHEGYQ 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +  F+  +D + + +I+G  E L    + L +  +L D       
Sbjct: 240 LYTIGQRRGLGINLSKVYFITGIDSDKNEIILGDFEELMKKEVELTDTVFLAD----IEK 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           ++  K F + R S   +P  +++ D+ ++  +++     + GQ  V Y  D     V+GG
Sbjct: 296 LEKIKLFGRPRFSSIGLPGRLKKIDNRIFFIYDEENAKNSPGQHMVIYYKD----LVVGG 351

Query: 381 GII 383
           G I
Sbjct: 352 GKI 354


>gi|205822051|sp|A4FMT5|MNMA_SACEN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 199/375 (53%), Gaps = 21/375 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V+GV L L +++  + R G+  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   VI  F   YAAG TP PC+ CN  +KF  LL     LG 
Sbjct: 60  AADILGIPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +RL V +DG    ++ R  D  +DQSY L + T +QL    FPLGD  K 
Sbjct: 120 DAVCTGHY--ARLTV-EDGV--PVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NGQILGRH 256
            VR  A E GL +A K DS DICF+  G   D  K + + +  + G +V    G +LG H
Sbjct: 175 QVRQEAAERGLAVAKKPDSHDICFIPDG---DTKKFLESKLGQKPGQLVDAETGAVLGEH 231

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G+  +T+GQR+GLG+      G P +V+ L+  S  V VG  + L V  I  +   W  
Sbjct: 232 TGVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIWPS 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +       +C V++R+         +  D G+ +   +   GVA GQA V Y  + 
Sbjct: 292 QRELDGPT----ECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEE 347

Query: 373 NEARVLGGGIISGSK 387
               VLG  +I+ ++
Sbjct: 348 EGDLVLGSALIAATR 362


>gi|170079302|ref|YP_001735940.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. PCC 7002]
 gi|169886971|gb|ACB00685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. PCC 7002]
          Length = 318

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 179/327 (54%), Gaps = 19/327 (5%)

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           K KG CC+ + + DA  +C+ + + H++ D  + F+  ++    S Y  G TPLPC  CN
Sbjct: 2   KGKGQCCS-EGMVDAADICEQLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCN 60

Query: 122 RTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           R VKF  +L   + +LG D +ATGHY R R    +D   R  + R +D  +DQSYFL+  
Sbjct: 61  RMVKFGPMLQWAKAELGIDQIATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDL 117

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAG 238
           TQ+ L    FPLG+M K   R +A EM L  A K +SQD+C ++          K I   
Sbjct: 118 TQEMLAGTLFPLGEMTKGETRQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ- 176

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298
              EG+IV L+G++LG H GI +YTIGQR+GLG+A  EPL+VV LD   +RV+V  R+  
Sbjct: 177 --REGEIVDLDGKVLGHHTGIHHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRA 234

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEV 357
                 ++ +NWL        +    +  V++R     VPV V     D + + FE+ + 
Sbjct: 235 GQSECTVQRMNWLA----LPGITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQF 290

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
           G+  GQA V Y  D    RVLGGGII 
Sbjct: 291 GITPGQAAVLYDGD----RVLGGGIIE 313


>gi|172058087|ref|YP_001814547.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sibiricum
           255-15]
 gi|205816866|sp|B1YJE9|MNMA_EXIS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171990608|gb|ACB61530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Exiguobacterium sibiricum 255-15]
          Length = 374

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 202/379 (53%), Gaps = 23/379 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P++  VVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  D
Sbjct: 6   KAPEETTVVVGMSGGVDSSVTAYLLKQQGYNVIGIFMKNWDD---TDENGFCTATEDYED 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 63  VIAVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLDHAMR 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R+   V +DG+ +  + R +D  +DQ+YFL   +Q Q+    FP+G M
Sbjct: 123 LGADFVATGHYARA---VYEDGEHK--LLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGHM 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  L+G+ +GR
Sbjct: 178 EKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLP--AQPGEMRTLDGKTMGR 235

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           H+G++ YT+GQR GLG+   GEP FVV  +   + + V      E L    +Y  +I+W 
Sbjct: 236 HDGLMYYTMGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISWT 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                       F+C  K R  Q   PV V+  D G + V F++ +  +  GQA VFY  
Sbjct: 296 A----TMPAGTEFRCTAKFRYRQTDTPVTVRVLDGGRLDVAFDERQRAITPGQAVVFYDG 351

Query: 371 DSNEARVLGGGIISGSKRS 389
           D      LGG  I  + ++
Sbjct: 352 DV----CLGGATIDDAYKA 366


>gi|284992470|ref|YP_003411024.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Geodermatophilus obscurus DSM 43160]
 gi|284065715|gb|ADB76653.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Geodermatophilus obscurus DSM 43160]
          Length = 357

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 200/370 (54%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AAL    G+DV GV L L   R+ + R G+  CC+ +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVDAGHDVTGVHLALSPDRQ-TLRSGARGCCSVEDAHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D  ERF   V+  F + YAAG TP PC+ CN  +KFS +L   R LG 
Sbjct: 60  VADELGIPFYVWDLAERFTEDVVEDFVAEYAAGRTPNPCLRCNEKIKFSAVLDRARALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+  +RL  G+       + R +D ++DQSY L   T  QL    FPLG M K+
Sbjct: 120 DAVVTGHH--ARLAGGE-------LRRSVDADKDQSYVLAVLTADQLAGAVFPLGSMTKQ 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHN 257
            VR++A E G  +A K+DS DICF+  G     + R     A  G +V    G  +G H 
Sbjct: 171 RVREIATERGFAVATKADSHDICFIPDGDTRGFLARRLG--AQPGPVVDAATGATVGEHA 228

Query: 258 GIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           G   +T+GQRRGLGVA+G+  P +V+ ++  +  V +G  +   V  +      W G   
Sbjct: 229 GAYGFTVGQRRGLGVAVGDSRPRYVLGIEPVTRTVTIGTADLAGVGEVRTARPTWTG--- 285

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNE 374
              A    F   V++R+   PVP  V   DD G+ +     + GVA GQ+ V Y  D+  
Sbjct: 286 --TAPALPFAAEVQLRAHGTPVPCEVTAGDDGGLRLLLGSHQRGVAPGQSAVLYAPDAER 343

Query: 375 A-RVLGGGII 383
              VLG G +
Sbjct: 344 GDLVLGQGTV 353


>gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-29]
 gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-28]
 gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-3]
 gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-3]
 gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-28]
 gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-29]
          Length = 376

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 200/377 (53%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKDNILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q    V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKAKETE----FKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGG  I
Sbjct: 350 FYDGD----ECLGGATI 362


>gi|87162110|ref|YP_494273.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87128084|gb|ABD22598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|298694901|gb|ADI98123.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 361

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 199/374 (53%), Gaps = 44/374 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   VC+ I + 
Sbjct: 1   MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGAD +ATGHY
Sbjct: 58  YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
             +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++K  VR +A E
Sbjct: 118 --ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEE 173

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G++ YTIGQ
Sbjct: 174 QGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSGLMYYTIGQ 231

Query: 267 RRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV---- 321
           R GLG+   G+P FVV              ++L+ + +Y+ E  +  D L+ D ++    
Sbjct: 232 RHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYSDYLIASDY 277

Query: 322 -----------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
                       GF+C  K R  Q    VFV+R ND  + V F +    +  GQA VFY 
Sbjct: 278 SFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQ 337

Query: 370 SDSNEARVLGGGII 383
            D      LGG  I
Sbjct: 338 GDV----CLGGATI 347


>gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria innocua FSL J1-023]
          Length = 371

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 200/385 (51%), Gaps = 43/385 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  GD+  L+G++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V              E  +  
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFV--------------EQGFHH 276

Query: 313 DGLFEDAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358
           D L+ D+++               F+C  K R  Q    V V   +DG   V F      
Sbjct: 277 DSLYSDSLIATDISFTTNSEKPKTFECTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRA 336

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           +  GQA VFY  D      LGGG I
Sbjct: 337 ITPGQAVVFYDGDI----CLGGGTI 357


>gi|217964341|ref|YP_002350019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HCC23]
 gi|254811452|sp|B8DDZ8|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HCC23]
 gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes L99]
          Length = 371

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 203/383 (53%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADFVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 AMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +     A     +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    ++ A
Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365


>gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262]
 gi|24638323|sp|Q92BK1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262]
          Length = 371

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 199/385 (51%), Gaps = 43/385 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  GD+  LNG++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V              E  +  
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFV--------------EQGFHH 276

Query: 313 DGLFEDAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358
           D L+ D+++               F C  K R  Q    V V   +DG   V F      
Sbjct: 277 DSLYSDSLIATDISFTTNSEKPKTFVCTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRA 336

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           +  GQA VFY  D      LGGG I
Sbjct: 337 ITPGQAVVFYDGDI----CLGGGTI 357


>gi|313680731|ref|YP_004058470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanithermus profundus DSM 14977]
 gi|313153446|gb|ADR37297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanithermus profundus DSM 14977]
          Length = 369

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 201/377 (53%), Gaps = 21/377 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---KGSCCAGQDVYD 75
           K  RV+VAMSGGVDSSV AALL   GYDV+G  ++ ++  + ++    + SCC      +
Sbjct: 2   KKPRVLVAMSGGVDSSVAAALLVEQGYDVVGAMMKFWSDEELAESCNSESSCCTPTAALE 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V   + +   + DY E F   ++ PF   YAAG TP PCV CN  VKF  LL   R 
Sbjct: 62  AGWVARQLGIPFELLDYRETFDERIVTPFLEGYAAGRTPNPCVWCNTDVKFDALLEHARA 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA+ +ATGHY+R       +G     + R  D  +DQ+YFL+ T +  L  L FP+G +
Sbjct: 122 IGAEYVATGHYVRR-----VEGPAGVELWRGGDAAKDQTYFLWGTPRAALPHLLFPVGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K +VR LA   GL  A K +SQ+ICFV+      + K I +     G +V L +G+++G
Sbjct: 177 EKPAVRRLAEARGLITARKPESQNICFVRGSLRDFLAKHIPSE---PGPLVDLESGEVIG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G   YT+GQR+GLG+       +VV +   ++ V+VGPR ++E   +    +N L D
Sbjct: 234 EHAGARFYTVGQRKGLGLWKSHLERYVVEVRPETNEVVVGPRAAVEWWGLEASGLNLLLD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDS 372
                 + D  +  V+ R+      V       G + + FE+ +  VA GQ+ V Y  D 
Sbjct: 294 ---PAGLPDRIEAMVRYRTRPVGARVLELDPTAGRFRLRFERPQFAVAPGQSVVLYAGD- 349

Query: 373 NEARVLGGGIISGSKRS 389
              R+LGGG I  ++ +
Sbjct: 350 ---RLLGGGFIERAREN 363


>gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189040504|sp|B0TW32|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 359

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A Q + DA+ 
Sbjct: 2   QNNKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQHIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F + Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R++  V DDG  +  + + +D  +DQ+YFL+   Q+QL    FP+GD++K 
Sbjct: 119 DYIATGHYARTK--VIDDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ D + +     A +G+I   NG  +G H+G
Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLREIN--W 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+ I+  W
Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q   P  V+ N+DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQPCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348

Query: 370 SDSNEARVLGGGII 383
           +D      LGGGII
Sbjct: 349 NDV----CLGGGII 358


>gi|154509242|ref|ZP_02044884.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798876|gb|EDN81296.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC
           17982]
          Length = 363

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/378 (39%), Positives = 202/378 (53%), Gaps = 25/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +S+    R GS  CC+ +D  DA R
Sbjct: 1   MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPQECRIGSRGCCSIEDAGDAAR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I +  YV+D  + F   VI  F + Y AG TP PCV CN  VKF +L +  R LG 
Sbjct: 60  AAEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY         DG     + R  D  +DQSY L     ++L  +  PLGD   K
Sbjct: 120 DAVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A  +GL +++K DS DICF+  G     + R + G A EG+IV  +G++LGRH 
Sbjct: 175 AWVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFL-RAHLGAA-EGEIVSPDGEVLGRHE 232

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  NYT+GQR+GLG+      G P +V+     +++V+VG  E L + RI   +  WL  
Sbjct: 233 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLAS 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
              +D   D    FV++R+   PVPV  + R+ D   + V    S  GVA GQ+ V Y  
Sbjct: 293 ---DDDGSDATDLFVQLRAHGTPVPVASLTRDLDAGTISVVLASSARGVARGQSMVVYRG 349

Query: 371 DSNEARVLGGGIISGSKR 388
                RVLG G I  + R
Sbjct: 350 ----TRVLGEGTIDATGR 363


>gi|297569866|ref|YP_003691210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925781|gb|ADH86591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 358

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 194/372 (52%), Gaps = 37/372 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR--- 78
           RV VAMSGGVDSSV AAL+ + G +V GV ++L              A   + D +R   
Sbjct: 12  RVAVAMSGGVDSSVTAALMLQAGAEVEGVFMRL--------------AQPGIEDHQRRVE 57

Query: 79  -VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V   + +   V D  E F   V+ PF ++Y AG TP PCV CNR +KF  LL      G
Sbjct: 58  GVAAHLGIPLTVLDLAEPFGQKVLQPFVAAYLAGLTPNPCVFCNRQIKFGLLLEAMLSRG 117

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LATGHY+R    +  D    R++CR +D  +DQSYFL    ++ L  + FPLG+ +K
Sbjct: 118 VDFLATGHYVRLTPALPLD----RLLCRGLDPRKDQSYFLCRLKREVLPRILFPLGEKRK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQI 252
             V +LA  +GL      +SQD+CF+ +    D +     +   A     G IV  +G+ 
Sbjct: 174 TEVYELAASLGLSGRHGPESQDVCFLGEQTVADFLAAYAGQEAPAEGPAGGLIVTTDGRE 233

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +GRH G+  YTIGQRRGLG+    P +VV LD  S+RV+VG  E L   +I L  +NWL 
Sbjct: 234 VGRHRGVFRYTIGQRRGLGIPDDTPYYVVALDAQSNRVVVGKPEDLLRRQIRLGALNWLI 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSD 371
           D     A     +  V++R    P P  +    DG + +DF++ +   A GQ   FY  D
Sbjct: 294 DPPRLPA-----RFSVQLRHRHRPAPALLTPAADGTFTLDFDQPQRAPAPGQYAAFYQED 348

Query: 372 SNEARVLGGGII 383
               ++LGGG I
Sbjct: 349 ----QLLGGGEI 356


>gi|193215134|ref|YP_001996333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088611|gb|ACF13886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 365

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 21/370 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDAR 77
           +V+V MSGGVDSSV A LL  +G++VIGVTL  +     +   S+ + +     +  +A+
Sbjct: 4   KVIVGMSGGVDSSVAACLLAEEGFEVIGVTLHTWEKLPKTNNDSEEQNALSPTHEHEEAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++       H+  D+ E F+  VI  F S Y  G TP PCV CN  +K+  LL   ++ G
Sbjct: 64  QIAAAKGFLHFTIDFREAFQREVIDYFKSEYLLGRTPNPCVICNTKIKWQALLQEAKRHG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY R    V     R R++ +  D  +DQSY L+  +Q+ L   RFPL D  K
Sbjct: 124 AAYIATGHYAR----VAKQEGRFRLL-QGCDASKDQSYVLWGLSQEILEKARFPLADYTK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
           + VR LAR+  L +A+K +SQ+ICF+    Y   +K     +A +   G I+  N   LG
Sbjct: 179 DEVRALARKYDLPVAEKDESQEICFIPDNNYERFLKDALPNLAEKIAGGKILDTNQNELG 238

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQRRGLG++   P++V  +    + ++VG ++ L    +   ++NW+   
Sbjct: 239 KHRGYPFYTIGQRRGLGISTPAPVYVTDIHAEDNTIVVGSKDDLLHSGLIATDLNWIAFS 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ++     F+   KIR      P  V   + G V V FE  +  +  GQA VFY+ +  
Sbjct: 299 KLQEP----FQAEAKIRYKDTAEPCVVTPLETGCVQVTFETPKRAITPGQAVVFYSGE-- 352

Query: 374 EARVLGGGII 383
              +LGGG I
Sbjct: 353 --ELLGGGFI 360


>gi|239616529|ref|YP_002939851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505360|gb|ACR78847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kosmotoga olearia TBF 19.5.1]
          Length = 359

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 206/368 (55%), Gaps = 19/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNS--RKASKRKGSCCAGQDVYDAR 77
           +++ VA+SGGVDS+V AA+LK +G+DV+G  ++ L ++      ++K  CC+  D  D  
Sbjct: 3   VKIGVALSGGVDSAVAAAILKAEGHDVVGYHMKNLPDTLFELVPEKKKVCCSPSDTIDTH 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++   + +   +    + FR  +I  F   Y AG+TP PCV CN  +KF  L+      G
Sbjct: 63  KIAAKLGIELRIVKLNDIFRKEIIDYFIREYQAGKTPNPCVRCNDLMKFGALMEKAFGDG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            +  A+GHY R    + +  K    + R +   +DQ+YFL    +++L  + FP G+M K
Sbjct: 123 MEKFASGHYAR----IVEHPKYGLSLARGVAKYKDQAYFLSRIKRRKLPYIIFPNGNMTK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256
           E +RD+ARE+GL +  K +SQ++CF+    Y   +  +  GI ++ G+IV L G +LGRH
Sbjct: 179 EEIRDIARELGLPVHSKKESQELCFIPDNDYRRFL--LEEGIEIKPGEIVDLEGNVLGRH 236

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+  YT+GQRRGLG+   + L+VV LD + +RV+VGP+E++   +    E NWL D L 
Sbjct: 237 KGLAFYTVGQRRGLGIVSDKKLYVVALDADKNRVVVGPKEAVMRKKFRAIEPNWLAD-LD 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E  +    +C  +IRS+       ++   + V V+F+K  + +  GQ  VFY  +     
Sbjct: 296 EKEL----RCQCQIRSNMKAQGATIRIFSNIVEVEFDKPALAITPGQLAVFYDGNI---- 347

Query: 377 VLGGGIIS 384
           VLG   I 
Sbjct: 348 VLGSAFIE 355


>gi|33866156|ref|NP_897715.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. WH 8102]
 gi|81572928|sp|Q7TTU4|MNMA_SYNPX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33639131|emb|CAE08137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8102]
          Length = 396

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 205/383 (53%), Gaps = 33/383 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CCA + +
Sbjct: 23  LRTWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACCA-EGL 75

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132
            DA  +C+ + + H+V D  + F+  ++      Y  G TPLPC  CNR+VKF  +L   
Sbjct: 76  VDAAGICEQLGIPHHVVDTRDTFQREIVQRLVDGYREGITPLPCSQCNRSVKFGPMLDWA 135

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G   +ATGHY R R + G+ G+ +  + R +D  +DQSYFL+   Q+ L  + FPL
Sbjct: 136 AEERGLPRIATGHYARIR-HGGEQGRHQ--LLRGLDSRKDQSYFLYDLPQEVLGRIVFPL 192

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQ 251
           G++ K   R  A   GL  A+K +SQD+C      +  +   ++A +   +G+IV  +G 
Sbjct: 193 GELTKADTRGEAARHGLRTAEKPESQDLCLADH--HGSMRAFLDAYLPPRQGEIVLSDGT 250

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+GI ++TIGQR+GLGVA  EPL V+ LD   ++V+V PR         +  INW+
Sbjct: 251 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDPAMNQVVVAPRAEAGQRSCVVGAINWV 310

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDG------VYVDFEKSEVGVA 360
                +       +  V++R   +PV     P+     D+         + F   +  + 
Sbjct: 311 SIAPLQQP----LELEVQVRYRSEPVAAQLTPIPHTPEDEARQRPHRCRLQFLDDQFSIT 366

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQA VFY  ++    VLGGG+I
Sbjct: 367 PGQAAVFYRGET----VLGGGLI 385


>gi|229826315|ref|ZP_04452384.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC
           49176]
 gi|229789185|gb|EEP25299.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC
           49176]
          Length = 360

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 195/364 (53%), Gaps = 11/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK+ GY+V GVT+ ++         G C   Q   DAR+V +
Sbjct: 4   KVVVGLSGGVDSSVAAYLLKKQGYEVYGVTMDIWTEGAVDTVNGGCLGSQAKEDARKVAE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+++ + V D   +FR  V+  FA SY  GETP PC  CNR VK+  L       GA+ +
Sbjct: 64  TLDIPYKVVDVRGKFRENVMNYFADSYKNGETPNPCTLCNRRVKWEALFKGAELFGAEYV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R         R  +       +DQ+Y L   TQ+QL     P+GD +K  VR
Sbjct: 124 ATGHYAKIRKLANG----RYTIANSYTAAKDQTYALCNLTQEQLRRTLLPIGDYEKSEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E G++IA K DS +ICF+  G Y   +++     A +G+ V ++G +LG H GI++
Sbjct: 180 KIAAEAGIEIAAKPDSMEICFIPDGDYAGYLEKEYGIAAHKGNFVDVDGNVLGEHRGIVH 239

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+A G+P+FV  +   ++ V++   E L   R+    IN++ +   E    
Sbjct: 240 YTIGQRKGLGIAFGKPMFVKEIRPETNEVVLSDNEGLFTERVVAERINFMAETKEEIEAS 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR--VLG 379
           D      KIR +       +   +D +  +F + +   A GQ  V Y    NEA   V G
Sbjct: 300 DKI-YLAKIRYNHKGGECKLSFEEDRIAAEFLEPQRASAPGQTLVVY----NEAGEVVCG 354

Query: 380 GGII 383
           G I+
Sbjct: 355 GRIV 358


>gi|315635921|ref|ZP_07891183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315479900|gb|EFU70571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 345

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 198/370 (53%), Gaps = 33/370 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N       K       ++     V  
Sbjct: 5   KVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDGYHEK-------NLGYIEDVAK 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ +++ D  + F   V   F  SY +G TP PCV CN+ +KF  +L   ++ GAD L
Sbjct: 58  FLNIKYHILDLADEFSKEVYDYFVDSYLSGTTPNPCVKCNKQIKFGAMLDFAKKHGADFL 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DGK         D  +DQSYFL    ++ L  + FPL   KKE + 
Sbjct: 118 ATGHYAKT------DGK---FFYEADDKTKDQSYFLSQVDKEALKYMMFPLSSYKKEDIV 168

Query: 202 DLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
               ++ +    I +KS+SQ+ICFV+   Y DVVKR +A I  EGD++  NG+++G+H G
Sbjct: 169 KFGAKLDVAYKKITEKSESQEICFVET-VYTDVVKR-HANIDQEGDVLDENGKVVGKHKG 226

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
             +YTIG+RRG  V    EP FV  L+   + ++VG +E+LEV+ +    +N   D    
Sbjct: 227 FAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVIGNNLNMFIDDT-- 284

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 F C VK+R      P  VQ  D+   +  ++   GVA+GQ  VFY    +  +V
Sbjct: 285 -----KFSCNVKLRYRSVSTPCEVQIKDEKACITLKEPVFGVANGQLAVFY----DNQKV 335

Query: 378 LGGGIISGSK 387
           +G   I  +K
Sbjct: 336 IGSAWIESTK 345


>gi|169338047|ref|ZP_02621467.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum C str. Eklund]
 gi|169295231|gb|EDS77364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum C str. Eklund]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 204/365 (55%), Gaps = 27/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V +SGGVDSSV A LLK  GYD+IG+T+++ +    S+            DA++V +
Sbjct: 7   KVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSSDLDVSE------------DAKKVAE 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +YV D  E F+  VI  FA  Y  G TP PC  CN+ +KF  +L   ++LGAD +
Sbjct: 55  KLDIPYYVIDLTEEFKKRVINSFAEEYLQGRTPNPCAVCNKYIKFGAMLEKAKELGADYI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   + G     R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K  +R
Sbjct: 115 ATGHYARIEEHNG-----RILVLNAKDDKKDQTYMFYSLTQDVLKHVLMPCGEYTKVQIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
           ++A+ +G+++ +K +S DICF+    +   ++++     ++ G+ V  NG +LG+H G+I
Sbjct: 170 EIAKNIGIEVHNKKESMDICFIPDNDHGKYIQQLECKDRIKPGNFVDENGNVLGKHKGLI 229

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+++G+P FV+ +    + V++G  E +  + +  +++N++      D++
Sbjct: 230 YYTIGQRKGLGLSLGKPGFVIDIIPERNEVVIGDEEEIFNNGLIAKDVNFIP----FDSL 285

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   KIR S       +   D+G +   F+  +  +  GQ  VFY  D     ++G
Sbjct: 286 ENTMEVEAKIRYSTTKSKATIIPYDNGKIKAMFKDKQRAITKGQRVVFYIED----MLVG 341

Query: 380 GGIIS 384
           GG I 
Sbjct: 342 GGTIE 346


>gi|116872941|ref|YP_849722.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123461086|sp|A0AIW1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 371

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 204/383 (53%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLEEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  +GD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-IGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      ESL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +  +          F+C  K R  Q    V V  R+D    V F      +  GQA VFY
Sbjct: 291 FTTNA----EKPKTFECTAKFRYRQTDTKVTVHLRSDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    +++A
Sbjct: 347 DGDI----CLGGGTIDTVWKNEA 365


>gi|56963351|ref|YP_175082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus clausii KSM-K16]
 gi|81366419|sp|Q5WHN4|MNMA_BACSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56909594|dbj|BAD64121.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus clausii KSM-K16]
          Length = 364

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  +D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    S   G C A +D  D
Sbjct: 2   KKREDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---SNDSGFCSATEDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   + + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L+    
Sbjct: 59  VERVAQQLGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAIS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + +     DG+ R I  +  D  +DQ+YFL A +Q+QL  + FPLG +
Sbjct: 119 LGADYVATGHYAQLQEL---DGEYRLI--KGADANKDQTYFLNALSQKQLSKVMFPLGHL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ +  + + ++      A  G +  ++G   G+
Sbjct: 174 QKAEVRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLP--AQPGRMETMDGIDKGQ 231

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           H+G++ YT+GQR+GLG+   GEP FV+  D   + +IVG       L    ++  ++NW+
Sbjct: 232 HDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                ++     F C  K R  Q+   V V   +DG  ++ F++ +  +  GQA V Y  
Sbjct: 292 A----KEERTSPFTCKAKFRYRQEDQGVTVFPKEDGRAFIQFDQPQRAITPGQAVVLYEG 347

Query: 371 DSNEARVLGGGIISGSKRSDA 391
           D    R +GGG+I    R +A
Sbjct: 348 D----RCIGGGVIDKIHRENA 364


>gi|46907740|ref|YP_014129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 4b F2365]
 gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes Clip81459]
 gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J1-194]
 gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL R2-503]
 gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HPB2262]
 gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J2-064]
 gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N1-017]
 gi|67461977|sp|Q71ZF8|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|259495831|sp|C1KVF9|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|225876575|emb|CAS05284.1| Putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL R2-503]
 gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HPB2262]
 gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J1-194]
 gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N1-017]
 gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 1816]
 gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 220]
          Length = 371

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 203/383 (53%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    ++ A
Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365


>gi|215431975|ref|ZP_03429894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis EAS054]
 gi|289755139|ref|ZP_06514517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis EAS054]
 gi|308375963|ref|ZP_07445668.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu007]
 gi|308377199|ref|ZP_07441475.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu008]
 gi|289695726|gb|EFD63155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis EAS054]
 gi|308344583|gb|EFP33434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu007]
 gi|308348530|gb|EFP37381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu008]
          Length = 361

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 200/369 (54%), Gaps = 26/369 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG D +ATG
Sbjct: 60  IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K  +R  A
Sbjct: 120 HYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
              GL +A+K DS DICF+  G  K F + +RI       G +V  +G +L  H+G+  +
Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGF 226

Query: 263 TIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +   G    
Sbjct: 227 TIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPS 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D     VL
Sbjct: 286 GPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVL 342

Query: 379 GGGIISGSK 387
           G   I+G+ 
Sbjct: 343 GSATIAGAS 351


>gi|25027890|ref|NP_737944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
 gi|30173439|sp|Q8FQ01|MNMA_COREF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|23493173|dbj|BAC18144.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
          Length = 365

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 199/377 (52%), Gaps = 23/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V A+     G++V+GV L L    ++ +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG  R    R +D+ +DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPADGGDGYLR----RGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R+ A   G  +A K DS DICF+  G   +    +   I L  G IV   G  L  H 
Sbjct: 177 EIREEAAASGFSVAKKPDSYDICFIPDG---NTQAFLGKHIGLRPGMIVDREGTTLREHA 233

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GL +    A G P +V  +D  +  V VG RE LEV  I+   + +L  
Sbjct: 234 GVHEFTIGQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFL-- 291

Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                  +DG   C V++R+    V     + R  D + +D  +S  GVA GQA V Y  
Sbjct: 292 ----HPAMDGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLP 347

Query: 371 DSNEARVLGGGIISGSK 387
           D     VLG G I G++
Sbjct: 348 DPEGDIVLGSGTICGTE 364


>gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria marthii FSL S4-120]
 gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria marthii FSL S4-120]
          Length = 371

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 201/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  ADK DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 GMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 347 DGDI----CLGGGTI 357


>gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e]
 gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|224500677|ref|ZP_03669026.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes Finland
           1988]
 gi|224501548|ref|ZP_03669855.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           R2-561]
 gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N3-165]
 gi|254898322|ref|ZP_05258246.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J0161]
 gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes J2818]
 gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes F6900]
 gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
 gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
 gi|24638317|sp|Q8Y714|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e]
 gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N3-165]
 gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes F6900]
 gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
 gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
 gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes J2818]
          Length = 371

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 200/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  ADK DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 347 DGDV----CLGGGTI 357


>gi|193212019|ref|YP_001997972.1| tRNA-specific 2-thiouridylase MnmA [Chlorobaculum parvum NCIB 8327]
 gi|193085496|gb|ACF10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobaculum parvum NCIB 8327]
          Length = 364

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 198/377 (52%), Gaps = 27/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V++ +SGGVDS+  A LL + GY V G+ +++ ++ + +              A R+ D
Sbjct: 6   HVIIGLSGGVDSAAAACLLIKQGYRVTGLNIRVLDTPEDTSTLAP--------SAMRISD 57

Query: 82  TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +      VF  +   +F   V+  F   Y AG TP PC+ CN+ +K+  L    R LGAD
Sbjct: 58  SEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLGAD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R+      DG  R  + + +D E+DQSYFL+  TQ +L    FPLG   K  
Sbjct: 118 LVATGHYARTER---RDGVTR--LLKGIDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRH 256
           VR+LAR   +  A+K +SQ+ICFV    Y   + R   G+      G+IV  +G+++G H
Sbjct: 173 VRELARSFEVHAAEKKESQEICFVPHDDYCAYLTRAIPGLEERVAGGEIVDQSGKVIGHH 232

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YTIGQRRGLGV+ GEP++V  +D   +R+ VG +  LE   +    +NW G    
Sbjct: 233 RGYPFYTIGQRRGLGVSTGEPVYVTKIDAEHNRIRVGSKADLECRSLIATAMNWSGIAT- 291

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            DA    F+   +IR         V+   DD   V F + + GVA GQA VFY  D    
Sbjct: 292 PDAP---FETEARIRYRDRQSACMVEPLGDDRARVRFHEPKQGVACGQAVVFYDGDE--- 345

Query: 376 RVLGGGIISGSKRSDAV 392
            VLGGGII+    +D+ 
Sbjct: 346 -VLGGGIIAEVNPADSA 361


>gi|289571223|ref|ZP_06451450.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis T17]
 gi|289544977|gb|EFD48625.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis T17]
          Length = 347

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/359 (39%), Positives = 198/359 (55%), Gaps = 26/359 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            +R  A   GL +A+K DS DICF+  G  K F + +RI       G +V  +G +L  H
Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASH 226

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +  
Sbjct: 227 DGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            G      VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D
Sbjct: 287 -GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPD 341


>gi|255532078|ref|YP_003092450.1| tRNA-specific 2-thiouridylase MnmA [Pedobacter heparinus DSM 2366]
 gi|255345062|gb|ACU04388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter heparinus DSM 2366]
          Length = 363

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 17/371 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++   Y +  +S ++  CC+   + DA
Sbjct: 3   KKGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D  + F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RTLAVNYGFPHYILDIRDEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R    D G  R ++ +  D  +DQSY L+  +Q+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRQQ--DSG--RYVISKGKDENKDQSYVLWGVSQENLSRTQFPLGSFA 178

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A +MG  ++A KS+S +ICFV    Y   +K     +      G+ +  NG +
Sbjct: 179 KSEIRQMALDMGQEELAKKSESYEICFVPDNDYRAFLKHKVEDLEQRVAGGNFITSNGMV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A GEP+FV  +   S+ V++G  + LE     +R +N + 
Sbjct: 239 VGQHKGYPFYTIGQRKGLGIAFGEPMFVTQILPESNTVVLGRADELERKEAMVRNLNLVK 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              +E           KIR     +   + +  D + V F+ +   +A GQ+ VFY  + 
Sbjct: 299 ---YESIHEPMDNVVTKIRYKDAGMLSTIVQEKDKMRVVFDHNVSAIAPGQSAVFYEGND 355

Query: 373 NEARVLGGGII 383
               +LGGG +
Sbjct: 356 ----LLGGGFL 362


>gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 375

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK   YDV+GV ++ ++    S   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEQRYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D+     +M RP D  +DQ+YFL   TQ+QL    FPL D+ K  V
Sbjct: 124 IAMGHYAKT---VTDENGIVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H+G++
Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR GLG+   +    P FVV  +   + +IV      E L    +   E+++   
Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVSFFTG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
               D  +    C  K R  Q  V V V  N D   V+V+F++    V  GQA VFY  +
Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVFYDGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II  + R +
Sbjct: 355 ----ECLGGAIIDKAYRGN 369


>gi|94263083|ref|ZP_01286902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
 gi|93456626|gb|EAT06734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
          Length = 443

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 205/405 (50%), Gaps = 41/405 (10%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S+A   N++ +       +V VAMSGGVDSSV AALL++ G +V GV ++L      + R
Sbjct: 59  SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 118

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           +           A  V D + +   V D  + FR  V+ PF  +Y AG TP PCV CNR 
Sbjct: 119 Q----------RAAAVADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 168

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +KF  LL +    G ++LATGHY+  RL     G RR  +CR +D  +DQSYFL     +
Sbjct: 169 IKFGLLLEILLAQGVELLATGHYV--RLLPAATGGRR--LCRGLDPGKDQSYFLCRLAAE 224

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK---------- 233
           +L  L FPLGD  K  V  LA  +GL     S+SQD+CF+ +    D +           
Sbjct: 225 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDVCFLGKQSVGDFLAAHGPPGGAEG 284

Query: 234 --------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
                    ++   A +G IV ++G+ LG+H G+  YT+GQRRGLG+    P +VV LD 
Sbjct: 285 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 344

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             + V+VG  E L+   I L ++NWL        +   F   V++R    P P  ++   
Sbjct: 345 ARNLVVVGKPEDLQRRLIRLADLNWLTTA--PPPLPARFA--VQLRHRHRPAPALIEPAA 400

Query: 346 DGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
           DG + V F++ +   A GQ    Y  +    ++L GG I  ++ S
Sbjct: 401 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEILPAQAS 441


>gi|323359738|ref|YP_004226134.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Microbacterium testaceum StLB037]
 gi|323276109|dbj|BAJ76254.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Microbacterium testaceum StLB037]
          Length = 365

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 197/367 (53%), Gaps = 25/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +   + R GS  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSRA-GGTLRAGSRGCCTIEDAMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERFR+ VI  F S Y AG TP PC+ CN  +KF+ LL    +LG 
Sbjct: 60  AADKLGMPFYVWDFSERFRDDVIDDFVSEYRAGRTPNPCMRCNEKIKFAALLERALELGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  + L    D    R + R  D  +DQSY L   T +QL    FPLG    +
Sbjct: 120 DAVCTGHY--ATLV---DTPEGRELHRASDNAKDQSYVLGVLTAEQLAHTYFPLGATPSK 174

Query: 199 S-VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256
           + VR  A E GL +A K DS DICF+  G   D    +   +  E G+I+  +G ++G H
Sbjct: 175 ALVRAEAEERGLTVAQKPDSHDICFIPDG---DTRGWLADKVGAEKGEILDRSGAVVGTH 231

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQRRGL + +    G+P FV+ +   ++ V+VGP+E+L    I      W G
Sbjct: 232 EGAHAFTVGQRRGLQLGVPAPDGKPRFVLEVRPVNNTVVVGPKEALACAEIAGERFTWAG 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 +    F C V+IR+  DPVP F +  D  + V  +    GVA GQ  V Y    
Sbjct: 292 RAPSSTS----FACDVQIRAHADPVPAFAELEDGVLTVRPDAPFDGVAPGQTAVLY---- 343

Query: 373 NEARVLG 379
           +  RV+G
Sbjct: 344 DGTRVIG 350


>gi|297616542|ref|YP_003701701.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144379|gb|ADI01136.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 340

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 195/366 (53%), Gaps = 32/366 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V MSGGVDS V A LLK  GYDVIG+T+  +++    K             A  V  
Sbjct: 4   RVAVLMSGGVDSGVAALLLKEQGYDVIGLTMLNWSAEVCQK-------------AAEVAR 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +SH+V D    F+  VI  F  +Y  G TP PCV CN  VKF  +L     +G   +
Sbjct: 51  FLGISHHVVDLRAEFKRQVIDYFCRTYEEGLTPNPCVVCNEFVKFGLMLEQAWDVGCRWV 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  L   D+   R ++ + +D ++DQSYFL+   Q QLC L FPLG+M K+  +
Sbjct: 111 ATGHYARVEL---DETTGRHLLKKGVDPKKDQSYFLYRLKQNQLCRLLFPLGNMTKQETK 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKY--FDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            +A + GL +A   +SQ++CF+ +G Y  F   K +     + G I    G +LG H G+
Sbjct: 168 SIAAKYGLPVAKAEESQEVCFI-EGDYRQFLAAKGVK---GVPGPIRDQEGNVLGTHQGL 223

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318
           I+YT+GQRRGLG+  G P +V+ LD  ++ ++VG  + L    +   + N++  + L E 
Sbjct: 224 ISYTVGQRRGLGLRAGRPFYVIDLDTRNNTLVVGEEKELYRQELLATDNNFIPFESLTEP 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +V+      KIR +       +     G+ V+F   +  V  GQ+ V+Y  D     V+
Sbjct: 284 LMVEA-----KIRYTAPLAQARLTPVSGGIKVEFVHPQRAVTRGQSVVYYQGDV----VV 334

Query: 379 GGGIIS 384
           GGGII+
Sbjct: 335 GGGIIA 340


>gi|94266357|ref|ZP_01290057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
 gi|93453040|gb|EAT03525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
          Length = 389

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 204/405 (50%), Gaps = 41/405 (10%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S+A   N++ +       +V VAMSGGVDSSV AALL++ G +V GV ++L      + R
Sbjct: 5   SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 64

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           + +            V D + +   V D  + FR  V+ PF  +Y AG TP PCV CNR 
Sbjct: 65  QRAAA----------VADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 114

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +KF  LL      G ++LATGHY+  RL     G RR  +CR +D  +DQSYFL     +
Sbjct: 115 IKFGLLLETLLAQGVELLATGHYV--RLLPAATGGRR--LCRGLDPGKDQSYFLCRLAAE 170

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK---------- 233
           +L  L FPLGD  K  V  LA  +GL     S+SQDICF+ +    D +           
Sbjct: 171 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDICFLGKQSVGDFLAAHGPPGGAEG 230

Query: 234 --------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
                    ++   A +G IV ++G+ LG+H G+  YT+GQRRGLG+    P +VV LD 
Sbjct: 231 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 290

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             + V+VG  E L+   I L ++NWL        +   F   V++R    P P  ++   
Sbjct: 291 ARNLVVVGKPEDLQRRLIRLADLNWLTTA--PPPLPARFA--VQLRHRHRPAPALIEPAA 346

Query: 346 DGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
           DG + V F++ +   A GQ    Y  +    ++L GG I  ++ S
Sbjct: 347 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEILPAQAS 387


>gi|289434792|ref|YP_003464664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri FSL N1-067]
          Length = 371

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 203/377 (53%), Gaps = 23/377 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  RV
Sbjct: 7   DIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYDDVIRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGAD
Sbjct: 64  ANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q+QL  + FPLG M+K+ 
Sbjct: 124 FVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + GL  A+K DS  ICF+ +  +   +       A  G +  L+G++LG+H+G+
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVLGKHDGL 236

Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           + YTIGQR GLG+   GEP FV   D   + + V      ESL    +   +I++  +  
Sbjct: 237 MYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTNAE 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               +    +C  K R  Q    V V  R+D+   V F +    +  GQA VFY  D   
Sbjct: 297 KPKTI----ECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFYDGDI-- 350

Query: 375 ARVLGGGIISGSKRSDA 391
              LGGG I    +++A
Sbjct: 351 --CLGGGTIDTVWKNNA 365


>gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners DSM 13335]
 gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1]
 gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 11V1-d]
 gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners ATCC 55195]
 gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 143-D]
 gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 1401G]
 gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners DSM 13335]
 gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners ATCC 55195]
 gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 143-D]
 gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 1401G]
          Length = 375

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    S   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D+     +M RP D  +DQ+YFL   TQ+QL    FPL D+ K  V
Sbjct: 124 IAMGHYAKT---VTDENGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H+G++
Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E+++   
Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VFY  +
Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II  + R +
Sbjct: 355 ----ECLGGAIIDKAYRGN 369


>gi|117927897|ref|YP_872448.1| tRNA-specific 2-thiouridylase MnmA [Acidothermus cellulolyticus
           11B]
 gi|166234840|sp|A0LSQ2|MNMA_ACIC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117648360|gb|ABK52462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidothermus cellulolyticus 11B]
          Length = 362

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 151/375 (40%), Positives = 205/375 (54%), Gaps = 23/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G++V+GV L L ++ + S R+G+  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHEVVGVHLALSSTPR-SHREGARGCCSLEDARDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  ERFR  VI  F + YA G TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADVLGIPFYVWDVAERFRQDVIEDFLAEYAQGRTPNPCLRCNERIKFAAVLDRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +R+  G  G     + R  D  +DQSY L   +Q QL    FPLGD  K 
Sbjct: 120 DAVCTGHY--ARIQRGPQGLE---LHRAADSAKDQSYVLGVLSQPQLEHALFPLGDSLKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL +ADK DS DICF+  G   D + R + G A  GDIV  +G+ LG H+G
Sbjct: 175 EVRAEAAARGLAVADKPDSHDICFIPDGDTADFL-RSHLGAA-PGDIVDSSGRRLGSHDG 232

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQRRGL +      G P +V+ +   +  V+VG  + L V  +      W G  
Sbjct: 233 AYQFTVGQRRGLRLGTPAPDGRPRYVLEVSPVTRTVVVGTADELSVTGLTGVRPIWCGPP 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              DA ++   C V+ R+     P  V+   D V V+F     GVA GQA VFY     +
Sbjct: 293 --PDAPLE---CTVQYRAHGAAAPAVVELRGDEVDVEFRAPVRGVAPGQAAVFYA----D 343

Query: 375 ARVLGGGIISGSKRS 389
            RVLG   I+ ++R+
Sbjct: 344 TRVLGSATIARTRRA 358


>gi|308070334|ref|YP_003871939.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus polymyxa E681]
 gi|305859613|gb|ADM71401.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus polymyxa E681]
          Length = 373

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 205/380 (53%), Gaps = 28/380 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+  
Sbjct: 58  EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V +DG     + R +D  +DQ+YFL A +Q QL    FP+G
Sbjct: 118 LDLGADYVATGHYAQV---VEEDG--HFTLLRGVDSNKDQTYFLNALSQTQLSRAMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NG 250
            + K  VR +A   GL  A K DS  +CF+ +  +    K   +G   A  GD+V +  G
Sbjct: 173 HLPKPEVRKIAEAAGLYTAKKKDSTGVCFIGERNF----KEFLSGYLPAKGGDMVDIATG 228

Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPR-ESLEVHRIY 304
           ++ GRH+G++ YT+GQR+     G   GEP FV    L+KN   V+ G R  SL    + 
Sbjct: 229 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
             ++NW+     +      F+C  K R  Q    V +Q   DG V+V F+  +  +  GQ
Sbjct: 289 ATDVNWIEGA--DTRPTSEFRCTAKFRYRQPDQQVTLQWLADGTVHVIFDVHQKAITPGQ 346

Query: 364 ACVFYTSDSNEARVLGGGII 383
           A VFY  +    R LGGG I
Sbjct: 347 AVVFYDGE----RCLGGGTI 362


>gi|220913201|ref|YP_002488510.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter chlorophenolicus
           A6]
 gi|219860079|gb|ACL40421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter chlorophenolicus A6]
          Length = 372

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 191/377 (50%), Gaps = 28/377 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R CD + 
Sbjct: 1   MSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG D + TG
Sbjct: 60  IPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203
           HY +    V +D    R + R  D  +DQSY L   T +QL    FPL D   K  VR  
Sbjct: 120 HYAK----VIEDSHGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAE 175

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINY 262
           A   GL +A+K DS DICF+  G   D    +   I +  GDIV   G  +G H G   +
Sbjct: 176 AERRGLSVANKPDSHDICFIPDG---DTAGWLAEKIDMSTGDIVDETGAKVGEHPGANAF 232

Query: 263 TIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           T+GQRRGL +    A G+P FV+ +    ++V+VGP   L +  I   +++W G  + E 
Sbjct: 233 TVGQRRGLKLGRPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIQGIKVSWAGLPIEEV 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--------GVASGQACVFYTS 370
                F C  ++R+  DPVP   +   D    D     V        GVA GQ  V Y  
Sbjct: 293 DTGAEFDCHAQVRAHGDPVPAHARMEADPDSADAPARLVVTLTDPLRGVAPGQTVVLYQG 352

Query: 371 DSNEARVLGGGIISGSK 387
               +RVLG   I  ++
Sbjct: 353 ----SRVLGQATIDAAR 365


>gi|227548033|ref|ZP_03978082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079887|gb|EEI17850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 359

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 195/371 (52%), Gaps = 24/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+ AMSGGVDSSV AA L   G+DV+GV L L    +A++     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSSVAAARLVDAGHDVVGVHLALSRDPQATRESARGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SY  GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKAEVIDNFVWSYDNGETPNPCLRCNEKIKFAALLDRALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      V D+G  R    R  D  +DQSY L   T+ +L    FP+GD +K  
Sbjct: 121 AVATGHYA----IVDDEGNLR----RSADPLKDQSYVLGVLTRAELDRCIFPVGDTEKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258
           +R+ A+  G   A K DS DICF+  G     + R    I +  G IV  +G  L  H+G
Sbjct: 173 IREEAKRHGFSTATKPDSYDICFIPDGNTQAFLGR---SIGMRPGMIVDADGTELKEHDG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +    A G+P +V  +D  +  V VGPR++LEV  I    +      
Sbjct: 230 AFQYTIGQRRGLDLRVPAADGQPRYVTDIDAATGVVTVGPRQALEVREIRADRLK----- 284

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           +   A+   F   V+IR+    V    +   D + +       GVA GQA V Y  D + 
Sbjct: 285 VLHPAMNGTFTANVQIRAHGGVVGCDARVEGDEMVLALHSPLEGVARGQAAVLYLPDPDG 344

Query: 375 AR--VLGGGII 383
               VLG G I
Sbjct: 345 LGDVVLGSGTI 355


>gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J2-071]
 gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J2-071]
          Length = 371

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 203/383 (53%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +     A     +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    ++ A
Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365


>gi|331269731|ref|YP_004396223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum BKT015925]
 gi|329126281|gb|AEB76226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum BKT015925]
          Length = 346

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 200/370 (54%), Gaps = 38/370 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V + +SGGVDSSV A LLK  GYD+IG+T+++ +   +              DA +V +
Sbjct: 4   KVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVSE-------------DAAKVAE 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +++ D  + F+N VI  FA  Y  G TP PC  CN+ +KF  LL   ++LGAD +
Sbjct: 51  KLDIPYHILDLRDEFKNRVIDNFAEEYLQGRTPNPCAMCNKYIKFGVLLEKAKELGADYI 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   + G     R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K  +R
Sbjct: 111 ATGHYARVEEHNG-----RYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQIR 165

Query: 202 DLAREMGLDIADKSDSQDICFV---QQGKY---FDVVKRINAGIALEGDIVHLNGQILGR 255
           ++AR +GL++ DK +S DICF+     GKY    +   RI A     G+ V   G ILG+
Sbjct: 166 EIARNLGLEVHDKKESMDICFIPDNDHGKYIQGLECKNRIKA-----GNFVDKEGNILGK 220

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G+I YTIGQR+GLG+++G+P FV+ +    + V+VG    +    +  +++N++   L
Sbjct: 221 HKGLIYYTIGQRKGLGLSLGKPGFVIDIIPERNEVVVGDESEIFNSGLIAKDVNFIPFDL 280

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
            E+ +    +   KIR S       +   +DG + V F   +  +  GQ  VFY  D   
Sbjct: 281 LENPM----EVEAKIRYSTTKSKATIIPFEDGKIKVMFNDKQRAITKGQRVVFYIQD--- 333

Query: 375 ARVLGGGIIS 384
             ++GGG I 
Sbjct: 334 -MLVGGGTIE 342


>gi|46200029|ref|YP_005696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB27]
 gi|55980227|ref|YP_143524.1| tRNA-specific 2-thiouridylase MnmA [Thermus thermophilus HB8]
 gi|81405338|sp|Q72GX1|MNMA_THET2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81600559|sp|Q5SLN5|MNMA_THET8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46197656|gb|AAS82069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB27]
 gi|55771640|dbj|BAD70081.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB8]
          Length = 367

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 196/371 (52%), Gaps = 34/371 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKRKG--SCCAGQDVY 74
           RV+VAMSGGVDSSV A LLK  GY+V+G  ++ +      S +A K +   SCC     Y
Sbjct: 3   RVLVAMSGGVDSSVAALLLKEAGYEVVGAMMRFWPDLPPPSLEAGKPRAWESCCTPDAAY 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +ARRV D + +  Y+ DY E F   +I PF   YA G TP PC  CN  VKF  LL   R
Sbjct: 63  EARRVADRLGIPFYLLDYREVFEEEIISPFLQDYAQGRTPNPCARCNTFVKFGALLKQAR 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LG D +ATGHY+R         K    + R +D  +DQ+YFL+ T ++ L  L FP+G 
Sbjct: 123 RLGLDYVATGHYVR---------KEGLALLRGLDPHKDQTYFLWGTPKEALPHLLFPVGG 173

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQIL 253
           + K  VR LA + GL  A + +SQ++CFV       + +R+       G +V  L G+++
Sbjct: 174 LTKPEVRALAEKAGLPTARRPESQNLCFVAGDLKGFLKERLK---PRPGPLVDALTGEVV 230

Query: 254 GRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G H G   YT+GQR+GLG+       +VV +D   + V VGP+E+     +    +N L 
Sbjct: 231 GEHEGASLYTLGQRKGLGLYKTHLERYVVGVDPERNVVYVGPKEACYFEGLEGEGLNLLA 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + L E+         V++R    PV   V+ +   + + F      V  GQ+ VFY  + 
Sbjct: 291 E-LPEEVE-------VQVRYRTPPVRAKVE-SLSPLRLRFAHPVFAVTPGQSAVFYRGE- 340

Query: 373 NEARVLGGGII 383
              R+LGG +I
Sbjct: 341 ---RLLGGAVI 348


>gi|313681611|ref|YP_004059349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154471|gb|ADR33149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 339

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 204/367 (55%), Gaps = 37/367 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR--RV 79
           +V++ MSGGVDS+V   LLK  GYDV GV ++L+          S     +++ AR  R 
Sbjct: 4   KVLIGMSGGVDSTVSTLLLKEQGYDVEGVYMKLH----------SKPGYHEIHQARAQRA 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D   V  ++ D +E F   V  PF  +Y  G+TP PC  CNR +KF  +++    +GAD
Sbjct: 54  ADFAGVKLHILDLQEEFNAKVFTPFIETYKEGKTPNPCALCNRNIKFGAMVAYADSIGAD 113

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHYIR       DG   + + +  D  +DQSYFLF      +  L FPLG+  K  
Sbjct: 114 YVATGHYIRH------DG---QYLLQAHDDTKDQSYFLFYIDPALVPRLLFPLGERHKSD 164

Query: 200 VRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           ++  A  + GL+  A +S+S +ICFV+   Y DV+K     +  EG++++L G+++G+H 
Sbjct: 165 IKAYAAGIEGLESFASQSESSEICFVET-TYMDVLKPY-VPVDQEGEVLNLEGKVVGKHK 222

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+R+G  V    +P FVV +    ++++VG RE LE HR+ L  +N       
Sbjct: 223 GYMHYTIGKRKGFSVHGAHDPHFVVEIKPEINQIVVGTREDLECHRVELERVNMF----- 277

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D+  + F+C VK+R     V   V+ + D   V+  +  +GVASGQA VFY  +    +
Sbjct: 278 -DSRTE-FECDVKLRYRTTAVRCSVKIDGDHATVELHEPVLGVASGQAGVFYDGE----K 331

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 332 LLGGGWI 338


>gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST196]
 gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST196]
          Length = 376

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 200/377 (53%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++   A+   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  +   +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKGFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      F C  K R  Q    V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKAKEKE----FTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGG  I
Sbjct: 350 FYDGD----ECLGGATI 362


>gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 375

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 201/379 (53%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    S   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D      +M RP D  +DQ+YFL   TQ+QL    FPL D+ K  V
Sbjct: 124 IAMGHYAKT---VTDKNGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H+G++
Sbjct: 180 RMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTADGRIVGKHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E+++   
Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VFY  +
Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II  + R +
Sbjct: 355 ----ECLGGAIIDKAYRGN 369


>gi|254829729|ref|ZP_05234384.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 10403S]
          Length = 371

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 202/375 (53%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I++ +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIDIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  ADK DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV   L +N   V  G   E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKNLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 347 DGDV----CLGGGTI 357


>gi|187250509|ref|YP_001874991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Elusimicrobium minutum Pei191]
 gi|186970669|gb|ACC97654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Elusimicrobium minutum Pei191]
          Length = 354

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 36/376 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAG---QDVYDA 76
           M+++V +SGGVDSS+ AALLK  GY+V G T+ +++ S        + C G   +D+  A
Sbjct: 1   MKILVGLSGGVDSSLTAALLKDKGYEVTGATMSIWDPSLPTPATPNNACLGPEEEDIKTA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V   I +  +V D  E ++  VI  F   Y  G TP PC+ CN  +KF  L +  ++ 
Sbjct: 61  SAVAKEIGIGFHVIDCREEYKKIVIENFKDEYKKGRTPNPCIWCNSFIKFGALPASAKKQ 120

Query: 137 GA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G   D  ATGHY R    + ++   R  + + +D  +DQ+YFL+  TQ+QL +  FPLG+
Sbjct: 121 GVIFDKFATGHYAR---IIFNEETGRYQLRKALDEAKDQTYFLYRLTQKQLSETLFPLGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             K+ VR LA+E  L  A+K+DSQD  C    G Y D+++      A  G IV   G +L
Sbjct: 178 YTKKQVRALAKEKNLLAAEKADSQDFYC----GDYNDILQF----SAQPGSIVDKEGNVL 229

Query: 254 GRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+GI NYTIG+R+G+G++   EP++V+ L    + V+VG ++ L    +   EINW  
Sbjct: 230 GKHDGIWNYTIGKRKGVGISGAKEPMYVIELLPKQNLVVVGTKKDLYKDVLTASEINW-- 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
            G  E+   +  K   KIR    P      P+   R +    V F++ ++ + +GQ+ VF
Sbjct: 288 -GSVEEP-KEPVKVQAKIRQMHTPSNATLTPLPGNRAE----VKFDEPQMSITAGQSVVF 341

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     VLGGGII
Sbjct: 342 YQGDI----VLGGGII 353


>gi|260435745|ref|ZP_05789715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8109]
 gi|260413619|gb|EEX06915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8109]
          Length = 383

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 205/381 (53%), Gaps = 29/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L + P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CCA + +
Sbjct: 18  LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSG------KGACCA-EGL 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132
            DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CNR+VKF  +L   
Sbjct: 71  VDAAGICEQLGIPHHVVDTRETFQQEIVQRLVDGYRDGITPLPCSQCNRSVKFGPMLDWA 130

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +ATGHY R R + GD G+ +  + R +D  +DQSYFL+   Q+ L  + FPL
Sbjct: 131 LKERKLLRIATGHYARIR-HDGDQGRHQ--LLRGLDTRKDQSYFLYDLPQEVLGRIVFPL 187

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQ 251
           G++ K   R  A   GL  A+K +SQD+C      +  +   ++A +   +G+IV  +G 
Sbjct: 188 GELTKPDTRLEAALHGLRTAEKPESQDLCLADH--HGSMRAFLDAYLPPRQGEIVLSDGT 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+GI ++TIGQR+GLGVA  EPL V+ LD   +RV+V PR         +  +NW+
Sbjct: 246 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDAAMNRVVVAPRAEAGRDSCVVGAVNWV 305

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQ-----DPVPVF----VQRNDDGVYVDFEKSEVGVASG 362
                E       +  V+ RS+       P+P       Q       + F++ +  +  G
Sbjct: 306 SIDPIEAPRT--VEVQVRYRSTPVHAQLSPLPPTDADQQQERPHRCRLSFDEEQFSITPG 363

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA VFY  D+    VLGGG+I
Sbjct: 364 QAAVFYDGDT----VLGGGLI 380


>gi|329121788|ref|ZP_08250404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister micraerophilus DSM 19965]
 gi|327468061|gb|EGF13549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister micraerophilus DSM 19965]
          Length = 352

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 29/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDS++   LL+  GY+V G T+QL++             GQ++ DA+ +  
Sbjct: 8   RVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLNDAKEMAK 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140
            + + H V D  E ++  V+  F  SY  G TP PC+ C+  +KF      ++ +   D 
Sbjct: 55  FLGIKHAVIDIRELYKKIVLEYFIDSYKNGITPNPCMMCDFKLKFGVFYDESKAMFDCDY 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY R    V D  +++  + + +DL +DQSY ++  TQ+QL  + FPLG + K+  
Sbjct: 115 FATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKDT 171

Query: 201 RDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +++E GL   +K++SQDICF+  +  Y D +K        EG IV+  G+ILG+H+GI
Sbjct: 172 RRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHGI 231

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFED 318
            NYTIGQR+GLG+    P +VV +D  ++++IVG  E L   ++  +++ +  G    ++
Sbjct: 232 PNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDGKPPAQE 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +G     K+R         V+  DDG   V F++ +  + SGQ+ VFY  D    R+
Sbjct: 292 FTAEG-----KVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342

Query: 378 LGGGII 383
           +GGG I
Sbjct: 343 IGGGTI 348


>gi|319892675|ref|YP_004149550.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus pseudintermedius ED99]
          Length = 370

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 42/388 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   QNTRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYNDVIA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 61  VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R +  +DG     M R +D  +DQ+YFL   T+ QL  + FP+GD+ K+
Sbjct: 121 DYVATGHYARVRHH--EDGSVE--MLRGVDNNKDQTYFLNQLTEAQLSKVMFPIGDIDKQ 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG++ G+H G
Sbjct: 177 KVREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQPGEMRTLNGELKGQHGG 234

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           ++ YTIGQR GLG+   G+P FVV              ++LE + +Y+ E  +  D L+ 
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280

Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
           D ++             +  KC  K R  Q  V V V    DD V V F++    +  GQ
Sbjct: 281 DYLIASDVSFVNATDLTEPLKCTAKFRYRQKDVGVTVTAHGDDAVKVTFDEPVRAITPGQ 340

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391
           A VFY  D      LGG  I    + D 
Sbjct: 341 AVVFYDGDV----CLGGATIDDVYKKDG 364


>gi|254459090|ref|ZP_05072513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
 gi|207084361|gb|EDZ61650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
          Length = 343

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 33/368 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V+V MSGGVDS+V A LLK+DGYDV G+ ++L++     +   S         A++
Sbjct: 3   KNKKVLVGMSGGVDSTVSALLLKKDGYDVEGLYMKLHSKPGYHEVHLS--------RAQK 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  +V D +E F   V  PF  +YA G+TP PC  CNR +KF +++     +GA
Sbjct: 55  AADFVGMKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMVKFADLIGA 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHYI++      DGK      +  D  +DQSYFLF   +  L  L FPLG   K 
Sbjct: 115 DYVATGHYIKT------DGK---YFYQAADDTKDQSYFLFYVQKNVLPKLIFPLGSRHKN 165

Query: 199 SVRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            +++ A  + GL+  A + +S +ICFV+   Y D++K     +   G+++  +G ++G H
Sbjct: 166 DIKEFAASIKGLESFASQGESSEICFVET-TYTDLLKDY-VNVDNSGEVLDRDGNVVGEH 223

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  V    EP +V+ +D  ++++ VG +E L  + + +  +N   D  
Sbjct: 224 KGYMHYTIGKRKGFTVKGAHEPHYVLSIDAKNNQITVGKKEELACNNVTIEHLNMFNDS- 282

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 D F   VK+R     VP  V+  ++   V  ++S  GVA+GQA VFY  D    
Sbjct: 283 ------DEFDTTVKLRYRTIAVPCHVKIENNKATVTLKESVYGVATGQAAVFYDDD---- 332

Query: 376 RVLGGGII 383
           R++GGG I
Sbjct: 333 RLIGGGWI 340


>gi|293189756|ref|ZP_06608472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces odontolyticus F0309]
 gi|292821346|gb|EFF80289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces odontolyticus F0309]
          Length = 363

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/378 (38%), Positives = 201/378 (53%), Gaps = 25/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +S+    R GS  CC+ +D  DA R
Sbjct: 1   MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPQECRIGSRGCCSIEDAGDAAR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I +  YV+D  + F   VI  F + Y AG TP PCV CN  VKF +L +  R LG 
Sbjct: 60  AAEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY         DG     + R  D  +DQSY L     ++L  +  PLGD   K
Sbjct: 120 DAVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A  +GL +++K DS DICF+  G     + R + G A EG+IV  +G++LGRH 
Sbjct: 175 AWVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFL-RAHLGAA-EGEIVTPDGEVLGRHE 232

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G  NYT+GQR+GLG+      G P +V+     +++V+VG  E L + RI   +  WL  
Sbjct: 233 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLAS 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
              +D   D    FV++R+   PVPV  + R+ D   + V       GVA GQ+ V Y  
Sbjct: 293 ---DDDGSDATGLFVQLRAHGTPVPVASLTRDLDAGTISVVLASGARGVARGQSMVIYRG 349

Query: 371 DSNEARVLGGGIISGSKR 388
                RVLG G I  + R
Sbjct: 350 ----TRVLGEGTIDETGR 363


>gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b]
 gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Exiguobacterium sp. AT1b]
          Length = 373

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 205/379 (54%), Gaps = 24/379 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P++  VVV MSGGVDSSV A +LK  GY+VIG+ ++ ++    +   G C A +D  D
Sbjct: 6   KAPEETTVVVGMSGGVDSSVTAHVLKEQGYNVIGIFMKNWDD---TDENGVCTATEDYED 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V + I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    +
Sbjct: 63  VIAVANQIGIPYYAVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDHALR 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + + YV  DG+ R  + R  D  +DQ+YFL   +Q QL    FP+G M
Sbjct: 123 LGADFVATGHYAQVK-YV--DGEHR--LLRGKDDNKDQTYFLNQLSQDQLARTMFPIGHM 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K+ VR +A E GL  A K DS  ICF+ +  + + +       +  G++  L+G + GR
Sbjct: 178 DKKDVRAIAEEAGLATAKKKDSTGICFIGERNFKEFLSEYLP--SQPGEMRTLDGVVKGR 235

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           H+G++ YT+GQR GLG+   G+P FVV  D  ++ + VG     ++L    +   +++W 
Sbjct: 236 HDGLMYYTLGQRHGLGIGGDGDPWFVVGKDVENNVLFVGQGFHHDALYSDALLASKLSWT 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
           G      A    F+   K R  Q  VPV V   ++G V V F++ +  +  GQA VFY  
Sbjct: 296 G-----AAPTGEFRATAKFRYRQQDVPVTVAPLENGEVLVKFDEPQRAITPGQAVVFYDG 350

Query: 371 DSNEARVLGGGIISGSKRS 389
           D      LGG  I  + R+
Sbjct: 351 DV----CLGGATIDEAYRN 365


>gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria innocua FSL S4-378]
          Length = 371

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 199/385 (51%), Gaps = 43/385 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  GD+  L+G++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V              E  +  
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFV--------------EQGFHH 276

Query: 313 DGLFEDAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358
           D L+ D+++               F C  K R  Q    V V   +DG   V F      
Sbjct: 277 DSLYSDSLIATDISFTTNSEKPKTFVCTAKFRYRQTDTKVTVNLREDGTAEVVFADPVRA 336

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           +  GQA VFY  D      LGGG I
Sbjct: 337 ITPGQAVVFYDGDI----CLGGGTI 357


>gi|296128959|ref|YP_003636209.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Cellulomonas flavigena DSM 20109]
 gi|296020774|gb|ADG74010.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Cellulomonas flavigena DSM 20109]
          Length = 372

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/378 (39%), Positives = 205/378 (54%), Gaps = 26/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV + L  +  A +R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHMALSRT-PAQERTGSRGCCSIEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + +YV+D  ERF   V+  F + YAAG TP PCV CN  VKF+ LL     LG 
Sbjct: 60  AADVLGIPYYVWDMSERFERTVVADFLAEYAAGRTPNPCVRCNEHVKFAALLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY R     G      R + R +D  +DQSY L     ++L    FPLGD+  K
Sbjct: 120 DAVCTGHYARVVERAGS-----RELHRAVDPAKDQSYVLAVMGPERLARAVFPLGDVASK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A K DS DICFV  G     ++R        G++V  +GQ++G H+
Sbjct: 175 SEVRAEAVARGLSVAAKPDSYDICFVADGDTQGFLRRALG--EQPGEVVDESGQVVGTHD 232

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQRRGL +      G P +V+ ++    RV+VGP ESL+V ++      W G 
Sbjct: 233 GAYAYTVGQRRGLALGRPAPDGRPRYVLAVEPVQRRVVVGPAESLDVAQVRGDAAVWFG- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQACVFYTSD 371
               D    G  C V++R+    VP  V   D G V VD   + + GVA+GQ+ V Y   
Sbjct: 292 ----DVPAAGATCTVQVRAHGTDVPARVLAADAGTVTVDVSGAGLRGVAAGQSLVLY--- 344

Query: 372 SNEARVLGGGIISGSKRS 389
            + +RV+G   ++ ++ +
Sbjct: 345 -DGSRVVGQATVAATRSA 361


>gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 374

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 202/377 (53%), Gaps = 26/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D  +V +
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  ++L   +DG     + R  D  +DQ+YFL   +  QL  + FP+G++ K  VR
Sbjct: 125 ATGHY--AQLTRDEDGHNH--LLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR+ GL  ADK DS  ICF+ +  +   +       A  G ++ ++G++ G+H+G++ 
Sbjct: 181 EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQRRGLG+       +P FVV  D   + + VG     E L    +   +I+W+ + 
Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372
              D   D F C  K R  Q    V V  +DDG  V VDF+     +  GQA VFY  + 
Sbjct: 298 --LDRGQD-FHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGE- 353

Query: 373 NEARVLGGGIISGSKRS 389
                LG  II  + + 
Sbjct: 354 ---ECLGSAIIDAAYKQ 367


>gi|313892248|ref|ZP_07825841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister microaerophilus UPII 345-E]
 gi|313119386|gb|EFR42585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister microaerophilus UPII 345-E]
          Length = 352

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 29/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+ AMSGGVDS++   LL+  GY+V G T+QL++             GQ++ DA+ +  
Sbjct: 8   RVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLDDAKEMAK 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140
            + + H V D  E ++  V+  F  SY  G TP PC+ C+  +KF      ++ +   D 
Sbjct: 55  FLGIKHAVIDIRELYKKIVLEYFIDSYKNGVTPNPCMMCDFKLKFGVFYDESKAMFDCDY 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY R    V D  +++  + + +DL +DQSY ++  TQ+QL  + FPLG + K+  
Sbjct: 115 FATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKDT 171

Query: 201 RDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +++E GL   +K++SQDICF+  +  Y D +K        EG IV+  G+ILG+H+GI
Sbjct: 172 RRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHGI 231

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFED 318
            NYTIGQR+GLG+    P +VV +D  ++++IVG  E L   ++  +++ +  G    ++
Sbjct: 232 PNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDGKPPAQE 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +G     K+R         V+  DDG   V F++ +  + SGQ+ VFY  D    R+
Sbjct: 292 FTAEG-----KVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342

Query: 378 LGGGII 383
           +GGG I
Sbjct: 343 IGGGTI 348


>gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 375

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 201/379 (53%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    S   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D      +M RP D  +DQ+YFL   TQ+QL    FPL D+ K  V
Sbjct: 124 IAMGHYAKT---VTDKNGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H+G++
Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E+++   
Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VFY  +
Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II  + R +
Sbjct: 355 ----ECLGGAIIDKAYRGN 369


>gi|197284773|ref|YP_002150645.1| tRNA-specific 2-thiouridylase MnmA [Proteus mirabilis HI4320]
 gi|227357779|ref|ZP_03842128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis ATCC 29906]
 gi|229486421|sp|B4EVG2|MNMA_PROMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194682260|emb|CAR41993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis HI4320]
 gi|227162108|gb|EEI47122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis ATCC 29906]
          Length = 367

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V+G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     DGK +  + R +D  +DQSYFL+  + QQ+    FP+G+M+K  V
Sbjct: 125 IATGHYVRRR---DIDGKSQ--LLRGVDNNKDQSYFLYTLSHQQIAQSLFPVGEMEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G H G++
Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIVTVDGETIGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGHEHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + + F+C VK R  Q  +P  V   ++D + V F+     V  GQ+ VFY 
Sbjct: 296 VA----REPITEAFRCTVKTRYRQADIPCTVTPLDEDKIEVRFDYPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 352 DEV----CLGGGII 361


>gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 09V1-c]
          Length = 375

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    S   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D      +M RP D  +DQ+YFL   TQ+QL    FPL D+ K  V
Sbjct: 124 IAMGHYAKT---VTDKNGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ +  + + +       A+ G IV  +G+I+G+H+G++
Sbjct: 180 RMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGKIVTADGRIVGKHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E+++   
Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VFY  +
Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II  + R +
Sbjct: 355 ----ECLGGAIIDKAYRGN 369


>gi|72161001|ref|YP_288658.1| tRNA-specific 2-thiouridylase MnmA [Thermobifida fusca YX]
 gi|123733604|sp|Q47SD2|MNMA_THEFY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71914733|gb|AAZ54635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermobifida fusca YX]
          Length = 363

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 200/372 (53%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA     GYDV GV L L +S   S R G+  CC  +D  DARR
Sbjct: 3   LRVLAAMSGGVDSAVAAARAVEAGYDVTGVHLAL-SSNPQSYRTGARGCCTIEDSRDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  Y++D  E F   V+  F + YAAG TP PC+ CN  +KF  +L     LG 
Sbjct: 62  AADVIGIPFYIWDMAEEFDRDVVQDFVAEYAAGRTPNPCLRCNEKIKFQAVLERALALGF 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH++R      ++G+ R    R +D  +DQSY L   T++QL    FPLGD  KE
Sbjct: 122 DAVCTGHHVRL-----ENGRLR----RSVDAVKDQSYVLAVLTREQLAHAIFPLGDCTKE 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL +ADK DS DICF+  G     ++R     +  G IV   GQ++G H G
Sbjct: 173 EVRAEAARRGLTVADKPDSHDICFIADGDTSGFLERRLG--SNPGPIVDETGQVVGEHRG 230

Query: 259 IINYTIGQRRGLGVAMGEPL--FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
              +T+GQRRGL ++ G P   +V+ ++  S+ V VGPRE+L+V RI      W G    
Sbjct: 231 AHAFTVGQRRGLNLS-GAPHRRYVLSIEPVSNTVRVGPREALQVDRIVGERPVWSGCEPP 289

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E+         V++R+  +      ++ +  V +  ++  +GVA GQA V Y  D     
Sbjct: 290 EEWT----PFLVQLRAHGEVYSCRARQYEGRVEILLDEPALGVAKGQAAVLYDGDV---- 341

Query: 377 VLGGGIISGSKR 388
           V+G   I+ + R
Sbjct: 342 VMGSSTIAETSR 353


>gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri FSL S4-171]
          Length = 371

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 203/377 (53%), Gaps = 23/377 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  RV
Sbjct: 7   DIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYDDVIRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGAD
Sbjct: 64  ANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q+QL  + FPLG M+K+ 
Sbjct: 124 FVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + GL  A+K DS  ICF+ +  +   +       A  G +  L+G++LG+H+G+
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVLGKHDGL 236

Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           + YTIGQR GLG+   GEP FV   D   + + V      ESL    +   +I++  +  
Sbjct: 237 MYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTNAE 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               +    +C  K R  Q    V V  R+++   V F +    +  GQA VFY  D   
Sbjct: 297 KPKTI----ECTAKFRYRQTDTKVTVHLRDNNTAEVVFAEPVRAITPGQAVVFYDGDI-- 350

Query: 375 ARVLGGGIISGSKRSDA 391
              LGGG I    +++A
Sbjct: 351 --CLGGGTIDTVWKNNA 365


>gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus buchneri ATCC 11577]
          Length = 374

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 26/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D  +V +
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  ++L   +DG     + R  D  +DQ+YFL   +  QL  + FP+G++ K  VR
Sbjct: 125 ATGHY--AQLTRDEDGHNH--LLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR+ GL  ADK DS  ICF+ +  +   +       A  G ++ ++G++ G+H+G++ 
Sbjct: 181 EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQRRGLG+       +P FV+  D   + + VG     E L    +   +I+W+ + 
Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372
              D   D F C  K R  Q    V V  +DDG  V VDF+     +  GQA VFY  + 
Sbjct: 298 --LDRGQD-FHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGE- 353

Query: 373 NEARVLGGGIISGSKRS 389
                LG  II  + + 
Sbjct: 354 ---ECLGSAIIDAAYKQ 367


>gi|294631522|ref|ZP_06710082.1| tRNA methyl transferase [Streptomyces sp. e14]
 gi|292834855|gb|EFF93204.1| tRNA methyl transferase [Streptomyces sp. e14]
          Length = 376

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 206/388 (53%), Gaps = 26/388 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           +  + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 3   ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  +++ VG+DG R   + R  D+ +DQSY L    ++QL    F
Sbjct: 122 DKALALGFDAVCTGHY--AKVVVGEDGVRE--LHRASDMAKDQSYVLGVLDEKQLAHALF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    KE +R  A   GL +A K DS DICF+  G     + R   G A EGDIV  
Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAR-RLGKA-EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G ++G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  + 
Sbjct: 236 TGAVVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVEALT 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
                W G      A   G   +  ++R+      V  +  D  + V F +   GVA GQ
Sbjct: 296 AIRPRWCG------AAPTGPGVYTAQLRAHGGESEVTAELVDGELRVTFTEPVRGVAPGQ 349

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391
           A V Y    +  RV+G   I+ ++R+ A
Sbjct: 350 AIVLY----DGTRVVGSATIASTRRATA 373


>gi|304407559|ref|ZP_07389211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343510|gb|EFM09352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus curdlanolyticus YK9]
          Length = 376

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 199/378 (52%), Gaps = 29/378 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K   + RVVV MSGGVDSSV A LLK++GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 3   KTKAETRVVVGMSGGVDSSVTALLLKQEGYDVIGIFMKNWDD---TDEFGHCTAEEDAED 59

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            RRVCD I + +Y  ++E+++ + V   F   Y  G TP P V CNR +KF + L     
Sbjct: 60  VRRVCDQIGIPYYTVNFEQQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGEFLQKAID 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY R       + K    + R +D  +DQ+YFL    Q QL    FP+GD+
Sbjct: 120 LGADYLATGHYARVERTANGETK----LLRGVDSNKDQTYFLHQLDQSQLAKAMFPIGDL 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NGQI 252
            K  VR +A E GL  A K DS  +CF+ +  +    K+  +G   A  G ++ L +G+ 
Sbjct: 176 PKPEVRRIAEEAGLATAKKKDSTGVCFIGERNF----KQFLSGYLPAQPGPMIDLRSGET 231

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLR 306
            G+H+G++ YT+GQR+     G   GEP FV    L++N   V+ G   + L   R+   
Sbjct: 232 KGQHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGDSHARLYSERLTAE 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
            INW+     E  +     C  K R  Q    V V  + DG+  V F++ +  +  GQA 
Sbjct: 292 GINWISPNRPEGPIT----CTAKFRYRQADQGVTVTLSADGMAEVVFDQPQKAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D      LGGG I
Sbjct: 348 VFYDGDI----CLGGGTI 361


>gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arsenophonus nasoniae]
          Length = 364

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 207/374 (55%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A  D+ DA+ VCD
Sbjct: 3   KVIVGMSGGVDSSVSAYLLKQQGYQVAGLFMKNW---EEDDNEEYCAAATDLADAQSVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 60  KLDIELHTVNFAAEYWDNVFAHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLAADY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +   G     R  + R +D  +DQSYFL+   Q QL    FP+G+++K +V
Sbjct: 120 IATGHYARCKTVNG-----RHQLLRGLDNNKDQSYFLYTLDQAQLAQSLFPIGELEKSTV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ILG H+G++
Sbjct: 175 RRIAEEIGLITAKKKDSTGICFIGERKFRDFLARYLP--AKPGVIITVDGKILGEHSGLM 232

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++R+IV      PR  L    + +++I+W
Sbjct: 233 YHTLGQRKGLGIGGVKEANDDPWYVVDKDIKNNRLIVAQGHNHPR--LMSTGLIVQQIHW 290

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +       A+ +  +  VK R  Q  +P  + Q +D+ + V F+     V  GQ+ VFY 
Sbjct: 291 IN----PPALNETNQYTVKTRYRQPDIPCTIKQLSDNKIIVQFDYPIAAVTPGQSAVFYQ 346

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 347 GEI----CLGGGVI 356


>gi|256390508|ref|YP_003112072.1| tRNA-specific 2-thiouridylase MnmA [Catenulispora acidiphila DSM
           44928]
 gi|256356734|gb|ACU70231.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Catenulispora acidiphila DSM 44928]
          Length = 358

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 200/375 (53%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA ++  G++V GV L L  +R+A  R G+  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARVRDAGHEVTGVHLALSRNRQA-LRDGARGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  Y++D  +RF   VI  F + Y AG TP PC+ CN  +KF+ +L   R LG 
Sbjct: 60  AADMLGIPFYIWDMSDRFHEDVIDDFVAEYQAGRTPNPCLRCNEKIKFAAVLDKARALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           DV+ATGHY  +RL  G  G     + R  D  +DQSY L      QL    FPLGD  K 
Sbjct: 120 DVVATGHY--ARLLDGPHGPE---LHRAADPAKDQSYVLGVLDADQLAHSLFPLGDDTKP 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +VR  A E GL +A K DS D+CF+  G     + +        G IV   G+ +G H+G
Sbjct: 175 AVRAEAAERGLYVAKKPDSHDVCFIPDGDTKAYLAKTLG--TSSGPIVDSEGRRVGEHDG 232

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +TIGQRRGL +      G P +V+ +   ++ V VG  E L+V  +   ++ W G  
Sbjct: 233 AWGFTIGQRRGLRIGDPAGDGRPRYVLDISPVTNTVTVGTAEELDVTGLSGIKLRWCG-- 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +   +C  ++R+  +PVP   +R+  D + V   +   G+A GQA V Y    +
Sbjct: 291 ---PEFIGRIECHAQLRAHGEPVPATAERSGPDSIDVVLHEPVRGLAPGQAAVLY----D 343

Query: 374 EARVLGGGIISGSKR 388
             RV+G   ++ + R
Sbjct: 344 GTRVIGSATVAQTSR 358


>gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 374

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 26/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D  +V +
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  ++L   +DG     + R  D  +DQ+YFL   +  QL  + FP+G++ K  VR
Sbjct: 125 ATGHY--AQLTRDEDGHNH--LLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR+ GL  ADK DS  ICF+ +  +   +       A  G ++ ++G++ G+H+G++ 
Sbjct: 181 EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQRRGLG+       +P FV+  D   + + VG     E L    +   +I+W+ + 
Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372
              D   D F C  K R  Q    V V  +DDG  V VDF+     +  GQA VFY  + 
Sbjct: 298 --LDRGQD-FHCTAKFRYRQRDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGE- 353

Query: 373 NEARVLGGGIISGSKRS 389
                LG  II  + + 
Sbjct: 354 ---ECLGSAIIDAAYKQ 367


>gi|320449214|ref|YP_004201310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus scotoductus SA-01]
 gi|320149383|gb|ADW20761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus scotoductus SA-01]
          Length = 372

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 196/373 (52%), Gaps = 36/373 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-----RKG----SCCAGQD 72
           +V+VAMSGGVDSSV A LLK  GY+V+G  ++ +             KG    SCC  + 
Sbjct: 3   KVLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPEEPPRPTLDIPHKGRAWESCCTPEA 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            Y+ARRV + +++  Y+ DY E F   +I PF   YA G TP PC  CN  VKF  LL  
Sbjct: 63  AYEARRVAEILDIPFYLLDYRETFEEEIIQPFLKDYAQGRTPNPCARCNTFVKFGALLKQ 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++LG D +ATGHY+R         +    + R +D  +DQSYFL+ T ++ L  L FP+
Sbjct: 123 AQRLGLDYVATGHYVR---------REGESLLRGIDPLKDQSYFLWGTPKEALPHLLFPV 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQ 251
           G M K  VR LA   GL  A K +SQ++CFV       + +R+       G +V  L G+
Sbjct: 174 GGMTKAEVRALAERAGLPTARKPESQNLCFVAGDLKEFLRERLE---VRPGPLVDALTGE 230

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++G H G   YTIGQR+GLG+       +VV +D  ++ V VGPRE+     +   E N 
Sbjct: 231 VVGEHQGASLYTIGQRKGLGLFKPHLERYVVGVDPLANVVYVGPREATLWLGLEGEEANL 290

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           L + L E+         V++R    PV   V+ + + + + F      V  GQ+ VFY  
Sbjct: 291 LAE-LPEEVE-------VQVRYRTPPVRAKVE-SLNPLRLRFATPVFAVTPGQSAVFYQG 341

Query: 371 DSNEARVLGGGII 383
           +    R+LGG +I
Sbjct: 342 E----RLLGGAVI 350


>gi|251798335|ref|YP_003013066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. JDR-2]
 gi|247545961|gb|ACT02980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. JDR-2]
          Length = 377

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 204/378 (53%), Gaps = 29/378 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ ++ RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  D
Sbjct: 3   KSKQETRVVVGMSGGVDSSVTALLLKQQGYDVVGIFMKNWDD---TDEFGHCTAEEDAED 59

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            RRVCD I + +Y  ++E+++ + V   F   Y  G TP P V CNR +KF D L    +
Sbjct: 60  VRRVCDQIGIPYYTVNFEKQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGDFLKKANE 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY  +R+   +DG+ R  + R +D  +DQ+YFL A  Q+QL    FP+G +
Sbjct: 120 LGADYLATGHY--ARVERNEDGETR--LLRGVDGNKDQTYFLSALNQKQLEKAMFPIGHL 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NGQI 252
            K  VR +A E GL  A K DS  +CF+ +  +    K   +G   A  GD+V + +G++
Sbjct: 176 PKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNF----KEFLSGYLPARPGDMVDIRSGEV 231

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLR 306
            GRH+G++ YT+GQR+     G   GEP FV    L++N   V+ G    SL    +   
Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGESHPSLYSTGLTAS 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
            +NW+     E      F+C  K R  Q    V V  + DG   V F+  +  +  GQA 
Sbjct: 292 GMNWIAPLRPEGT----FRCTAKFRYRQPDQGVSVTLHTDGTAEVVFDYPQKAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y  D      L GG I
Sbjct: 348 VLYDGDV----CLAGGTI 361


>gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 374

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 200/377 (53%), Gaps = 26/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D  +V +
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  ++L    DG     + R  D  +DQ+YFL   +  QL  + FP+G++ K  VR
Sbjct: 125 ATGHY--AQLTRDADGHNH--LLRASDGNKDQTYFLSQLSADQLDRVMFPIGNLVKPDVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +ARE GL  ADK DS  ICF+ +  + + +       A  G ++ ++G++ G+H+G++ 
Sbjct: 181 KIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQRRGLG+       +P FVV  D   + + VG       L    +   +I+W+ + 
Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDIHWVNN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372
              D   D F C  K R  Q    V V  +DDG  V VDF+     +  GQA VFY  D 
Sbjct: 298 --LDRGKD-FHCTAKFRYRQKDTGVTVHISDDGQSVRVDFDAPVRAITPGQAVVFYDGD- 353

Query: 373 NEARVLGGGIISGSKRS 389
                LG  II  + + 
Sbjct: 354 ---ECLGSAIIDAAYKQ 367


>gi|284097781|ref|ZP_06385771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283830707|gb|EFC34827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 372

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------KASKRKGSCCAGQDVYDARRV 79
           MSGGVDSSV A LL   GYDV GVTLQ++          K  + +G C  G     AR V
Sbjct: 1   MSGGVDSSVAALLLTEQGYDVQGVTLQVWEPEDDNAAVTKKWEERGCCKVGL----ARHV 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H V D  E FR  VI  F + Y  G TP PCV CN  VKF  L  + +  G D
Sbjct: 57  AGRLGIPHEVVDTRETFRKNVIDDFVAGYLGGTTPNPCVRCNEWVKFGGLYELAKDRGID 116

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +R+   D+G     + R  D ++DQSYFL+      L  + FP+G ++K  
Sbjct: 117 FVATGHY--ARVVPVDEGVG---LFRGADGKKDQSYFLYRLPAAWLPHILFPVGHLQKTE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           V   A E+ L   +  +SQ+ICFV QG Y   +          G  +   G+ +G H GI
Sbjct: 172 VWARAEELDLPADEMKESQEICFVTQGDYRTFLTEEAPQALRPGPFLDPEGRKIGEHRGI 231

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE-- 317
             YT GQR+GLG+A GE L+V  ++  ++ V++G  E L      ++++NWL D L E  
Sbjct: 232 AFYTPGQRKGLGIARGERLYVKEVNPETNAVVLGRAEDLSRQTCTVQDVNWLADTLPETL 291

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376
           D V       +K R +   V   VQ +  G   ++F++ +  ++ GQ+ V Y +D    R
Sbjct: 292 DHVA------IKYRYASPAVSGQVQPHTAGTLSIEFKEPQQALSPGQSLVLYQAD----R 341

Query: 377 VLGGGIISGSKR 388
           VLGGGII   +R
Sbjct: 342 VLGGGIIQPFER 353


>gi|290957209|ref|YP_003488391.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptomyces scabiei 87.22]
 gi|260646735|emb|CBG69832.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Streptomyces scabiei 87.22]
          Length = 376

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 204/390 (52%), Gaps = 28/390 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           ++ + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 3   EIPQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  +++ V +DG R   + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHY--AQVIVREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247
           PLGD    K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV 
Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGRS---EGDIVD 234

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +G +LG H G   YTIGQR+GL +      G+P +V+ +   ++ V VGP  SL+V  +
Sbjct: 235 ESGTVLGTHEGAFGYTIGQRKGLRIGTPASDGKPRYVLDISPVNNTVTVGPASSLDVEAL 294

Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
                 W G      A   G   +  ++R+      V  +  D  + V F +   GVA G
Sbjct: 295 TAIRPRWCG------AAPTGPGTYTAQLRAHGGETEVRAEPVDGTLEVSFTEPVRGVAPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           QA V Y    +  RV+G   I+ + R+ A 
Sbjct: 349 QAIVLY----DGTRVVGSATIASTTRAGAA 374


>gi|78776909|ref|YP_393224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas denitrificans DSM 1251]
 gi|123550559|sp|Q30SP2|MNMA_SULDN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78497449|gb|ABB43989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 341

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 206/367 (56%), Gaps = 37/367 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR--RV 79
           +V++ MSGGVDS+V A  LK +GY+V G+ ++L+          S     ++++AR  + 
Sbjct: 4   KVLLGMSGGVDSTVSAMFLKEEGYEVEGLYMKLH----------SNPGYHEIHEARARKA 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +V D +E F   V  PF  +YA G+TP PC  CNR++KF ++L    ++GAD
Sbjct: 54  ADFLGIKLHVIDLQEIFNEKVFKPFVDTYAKGKTPNPCALCNRSLKFGEMLKFAYKIGAD 113

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHYI++      DGK         D  +DQSYFLF   ++ L  L FPLGD KK  
Sbjct: 114 FVATGHYIKT------DGK---YFYEADDDTKDQSYFLFYVNKEILPRLLFPLGDRKKSE 164

Query: 200 VRDLAREM-GL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           +++LA  + GL   A + +S +ICFV+   Y D+++     +   G+++  +G+++G H 
Sbjct: 165 IKELAASINGLATFASQRESSEICFVET-TYTDLLQDY-VEVDKVGEVLDTSGKVVGEHK 222

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+RRG  V    +P +VV ++ + +++IVG +E L  + + L  +N   D   
Sbjct: 223 GYMHYTIGKRRGFSVNGAHDPHYVVSINPDKNQIIVGKKEDLACNSVVLNNLNLYSDE-- 280

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  F   VK+R     +P  V   DD  +V  ++S  GVA GQA VFY  D N  +
Sbjct: 281 -----KSFDTTVKLRYRTKAIPCHVDIIDDKAHVTLKESVFGVAVGQAAVFY--DGN--K 331

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 332 LLGGGWI 338


>gi|149376379|ref|ZP_01894142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter algicola DG893]
 gi|149359393|gb|EDM47854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter algicola DG893]
          Length = 386

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P++ RV+V MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+
Sbjct: 1   MTKAPENTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR V +TI ++ +   +   + + V   F S Y AG TP P + CN+ VKF   L   
Sbjct: 58  ADARAVAETIGITLHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R R    DDG     + + +D  +DQSYFL A + +++    FP+G
Sbjct: 118 ITLGADYIATGHYTRQRPL--DDGSGGAELLKGLDPNKDQSYFLHAVSGERIARTLFPVG 175

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E G    DK DS  ICF+ + K+ D +K+     A  G+I   +GQ++
Sbjct: 176 ELEKPEVRRIAAEQGFITHDKKDSTGICFIGERKFRDFLKQYIP--AQPGNIETPDGQVI 233

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLR 306
           GRH G++ +TIGQR+GLG+        EP +V    L +N    + G    L   R  + 
Sbjct: 234 GRHQGLMYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLIS 293

Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             ++W+      +A    F+C  K R  Q      V    +G  V F+ ++  V  GQ+ 
Sbjct: 294 GPVDWIAG----EAPAAEFRCKAKTRYRQPDQDCTVTVLGNGFRVVFDDAQRAVTPGQSV 349

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  +      LGGG+I  + R
Sbjct: 350 VFYRDEV----CLGGGVIEQTWR 368


>gi|294815245|ref|ZP_06773888.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327844|gb|EFG09487.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC
           27064]
          Length = 381

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 200/380 (52%), Gaps = 26/380 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYD 75
           P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  D
Sbjct: 6   PRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRD 64

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     
Sbjct: 65  ARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALA 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194
           LG D + TGHY  + +    DG R   + R  D+ +DQSY L    ++QL    FPLGD 
Sbjct: 125 LGFDAVCTGHY--ATVVTLPDGGRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDT 180

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQI 252
              K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +G  
Sbjct: 181 LTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDESGTR 237

Query: 253 LGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           LG H G   +TIGQR+GL +    A G+P +V+ +    +RV VGP E+L+V  +     
Sbjct: 238 LGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRP 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W G      A         ++R+     PV  +   DG+ V+F +   GVA GQA V Y
Sbjct: 298 RWCG-----TAPAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIVLY 352

Query: 369 TSDSNEARVLGGGIISGSKR 388
               +  RV+G   I+ ++R
Sbjct: 353 ----DGTRVVGSATIASTRR 368


>gi|260577537|ref|ZP_05845477.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258604341|gb|EEW17578.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 389

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 199/384 (51%), Gaps = 46/384 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V A+     G++VIGV L L  S +A  R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARRVADKLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL  +  LG D + TG
Sbjct: 60  IPFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY  +RL+ G       +M R +D  +DQSY L   T +QL    FP+GD  K  +R+ A
Sbjct: 120 HY--ARLHDG-------VMRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPEIREEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           ++ G  +A K DS DICF+  G+    + K+I     L  D    +G  +  H+G+  +T
Sbjct: 171 KDHGFGVASKPDSHDICFIPDGQTQAFLGKKIGLRPGLMKD---QDGSTVAEHDGVYGFT 227

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR+GLG+      G+P +V  +D  +  V +G R+ L V  I    +  L      D 
Sbjct: 228 IGQRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRL------DP 281

Query: 320 VVDG--FKCFVKIRSSQDPVPVFVQRNDDG------------------VYVDFEKSEVGV 359
            V G  F+C V++R+    VP   +  DD                   + +D  +   GV
Sbjct: 282 AVHGREFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEGESPWRLELDLHEPLQGV 341

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A GQA V Y  D+    +LG G I
Sbjct: 342 ARGQAAVVYQPDAEGDILLGSGTI 365


>gi|311694977|gb|ADP97850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine bacterium HP15]
          Length = 395

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 197/379 (51%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+ DA+ V
Sbjct: 15  NTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAV 71

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +   +   + + V   F S Y AG TP P + CN+ VKF   L     LGAD
Sbjct: 72  ADAIGIKLHTASFAAEYWDRVFEHFLSEYQAGRTPNPDILCNKEVKFRAFLDYAITLGAD 131

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G  GK +  + + +D  +DQSYFL A +  ++    FP+G+++K  
Sbjct: 132 YIATGHYARQRPIAGSTGKAQ--LLKGLDPNKDQSYFLHAVSGDRIARTLFPVGELEKPE 189

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A + G    DK DS  ICF+ + K+ D +K+     A  GDI   +GQ +GRH G+
Sbjct: 190 VRRIAEQQGFVTHDKKDSTGICFIGERKFKDFLKQYLP--AQPGDIETPDGQKIGRHQGL 247

Query: 260 INYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWL 311
           + +TIGQR+GLG+        EP +V    L +N    + G    L   R +    I+W+
Sbjct: 248 MYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLVSGPIDWV 307

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +A    F+C  K R  Q      V   D GV VDF+ ++  V  GQ+ VFY  +
Sbjct: 308 AG----EAPAGHFRCKAKTRYRQPDQDCQVLLIDGGVRVDFDDAQRAVTPGQSVVFYDGE 363

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGGG+I  + R D
Sbjct: 364 V----CLGGGVIEQTWRDD 378


>gi|315638313|ref|ZP_07893494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481660|gb|EFU72283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 338

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 201/369 (54%), Gaps = 36/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK+ G++VIG  ++L+          S    +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKQAGHEVIGCYMKLHGK--------SGYHEENIAKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +++ D +E F+  V +PF ++Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY  +RL  G        +   +D  +DQSYFL    ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHY--ARLENG-------CIKVAVDESKDQSYFLANANKEALQYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV +  Y DV+++      ++G+++  +G+++G HNG
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFV-ENTYVDVLEQF-MDTKIKGEVLDSSGKVVGEHNG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   ++++VG +E L+     L  IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKENQIVVGTKEELKTKEFKLENINLFIDK--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 F C VKIR     VP  V V  N +   +  ++   G+ASGQ  VFY  D    
Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNA-QISLKEPVYGLASGQMAVFYEED---- 329

Query: 376 RVLGGGIIS 384
           RV+  G IS
Sbjct: 330 RVIASGFIS 338


>gi|172040408|ref|YP_001800122.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium urealyticum DSM
           7109]
 gi|229486339|sp|B1VFZ9|MNMA_CORU7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171851712|emb|CAQ04688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium urealyticum DSM 7109]
          Length = 406

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 205/393 (52%), Gaps = 46/393 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRVV AMSGGVDS+V AA     G++VIGV L L  S +A  R GS  CC+ +D  DARR
Sbjct: 1   MRVVAAMSGGVDSAVAAARALEAGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL  +  LG 
Sbjct: 60  VADKLGIPFYVWDFSDRFKADVIDNFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  ++L+ G       ++ R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVVTGHY--AQLHDG-------VLRRGVDADKDQSYVLGVLTDEQLAHCMFPVGDTVKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            +R+ A + G  +A+K DS DICF+  G+       + + I L   +V    G+ +  H+
Sbjct: 171 EIREEAADAGFGVANKPDSHDICFIPDGR---TQAFLGSKIGLRPGLVRDTGGETVAEHD 227

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +T+GQR+GLG+      G P +V  +D ++  V VG RE L V  I    +  L  
Sbjct: 228 GVYGFTVGQRKGLGLPRETLDGRPRYVTDIDAHTGTVTVGTREDLRVGGIIADRLKRL-- 285

Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDF-----EKSEV--------- 357
               D  V G  F C V++R+    VP   +  DD   V       E  E+         
Sbjct: 286 ----DPEVHGREFDCEVQVRAHGGVVPARARLVDDPTPVTPAGRVKEADELPWRLELELL 341

Query: 358 ----GVASGQACVFYTSDSNEARVLGGGIISGS 386
               GVA GQA V Y  D +   +LG G I  +
Sbjct: 342 QPLEGVARGQAAVVYRPDEDGDILLGSGTIRAT 374


>gi|116334036|ref|YP_795563.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus brevis ATCC 367]
 gi|122269280|sp|Q03QJ0|MNMA_LACBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116099383|gb|ABJ64532.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus brevis
           ATCC 367]
          Length = 375

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 197/378 (52%), Gaps = 33/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSVVA  LK+ GYDVIGV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVVALRLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYALELGADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D+     +M R +D  +DQ+YFL   + +QL  + FP+GD+ K  VR
Sbjct: 125 ATGHYAQ---LTRDEAGHAHLM-RAVDQNKDQTYFLSQLSTEQLDRVMFPIGDLVKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A+E GL  A+K DS  ICF+ ++G + D +K      A  GD++ ++G+I G H G++
Sbjct: 181 EIAKEAGLATAEKKDSMGICFIGEKGHFKDFLKTYLPAKA--GDMMTVDGEIKGHHAGLM 238

Query: 261 NYTIGQRR----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR+    G      EP FV+  D   + + VG       L    +   +I+W+  
Sbjct: 239 YYTIGQRKGLGIGGDGIDNEPWFVIGKDLQKNILYVGKGYHNPHLYATHLSASDIHWVN- 297

Query: 314 GLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFY 368
                  +D    F C  K R  Q    V V  NDDG  V V+F+     +  GQA VFY
Sbjct: 298 ------TIDRGSDFHCTAKFRYRQKDTGVTVHLNDDGQQVTVEFDDPARAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGS 386
             D      LG  II  +
Sbjct: 352 NGD----ECLGSAIIDAA 365


>gi|218295964|ref|ZP_03496744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus aquaticus Y51MC23]
 gi|218243702|gb|EED10230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus aquaticus Y51MC23]
          Length = 371

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 194/373 (52%), Gaps = 40/373 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQDVYD 75
           V+VAMSGGVDSSV A LLK  GY+V+G  ++ +           A++   SCC     Y+
Sbjct: 5   VLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPDLPPVSLETGAARAWESCCTPDAAYE 64

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV D + +  Y+ DY E F  A+I PF   YA G TP PC  CN  VKF  LL   R+
Sbjct: 65  ARRVADLLGIPFYLLDYREVFEEAIIAPFLEDYARGRTPNPCARCNTFVKFGALLKQARR 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG D +ATGHY+R         +    + R +D E+DQSYFL+ T ++ L  L FP+G +
Sbjct: 125 LGLDYVATGHYVR---------REGEALLRGLDKEKDQSYFLWGTPKEALPHLLFPVGHL 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K+ VR +A+E GL  A K +SQ++CFV       + +R+ A      D+  L G+++G+
Sbjct: 176 TKKEVRQIAQEAGLPTARKPESQNLCFVAGDLKGFLKERLKARPGPLVDV--LTGEVVGQ 233

Query: 256 HNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G   YT+GQR+GLG+       +VV LD   + V VGP+E+             L +G
Sbjct: 234 HEGASLYTLGQRKGLGLWKTHLERYVVGLDVERNVVYVGPKEAA------------LWEG 281

Query: 315 L----FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           +             +  V++R    PV   V+ +   + + F      V  GQ+  FY  
Sbjct: 282 MEAEGENLLEELPEEVEVQVRYRTPPVRAVVESSSP-LCLRFLTPVFAVTPGQSAAFYRG 340

Query: 371 DSNEARVLGGGII 383
           +    R+LGG +I
Sbjct: 341 E----RLLGGAVI 349


>gi|149276507|ref|ZP_01882651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter sp. BAL39]
 gi|149233027|gb|EDM38402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter sp. BAL39]
          Length = 353

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 195/363 (53%), Gaps = 17/363 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDSSV A +L   GY+VIG+T++   Y +  +S ++  CC+   + DAR +     
Sbjct: 1   MSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDARTLAVNYG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
             HY+ D  + F + VI  F   Y AG TP PCV CN  +K+  LL    +L  + +ATG
Sbjct: 61  FPHYILDIRDEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKLDCEFIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY   R +  D+G  R ++ + +D  +DQSY L+  +Q+ L   +FPLG   K  +R +A
Sbjct: 121 HYANVRQH--DNG--RHVISKGLDENKDQSYVLWGVSQENLARTKFPLGSFAKSEIRQMA 176

Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRHNGII 260
            +MG  ++A KS+S +ICFV    Y   ++     +      G+ +  +G ++G+H G  
Sbjct: 177 LDMGQEELAKKSESYEICFVPDNDYRSFLRHKVGDLEERVAGGNFITSDGMVVGQHKGYP 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A GEP+FV  +   S+ V++G  + LE     +R +N +    +E+ +
Sbjct: 237 FYTIGQRKGLGIAFGEPMFVTKILPESNTVMLGRADELERGEALVRNLNLIK---YENIL 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   KIR         + +  D + V F+ +   +A GQ+ VFY  +     +LGG
Sbjct: 294 NPMDDVITKIRYKDAGTLSTIVQEKDKMRVVFDHAVSAIAPGQSAVFYEGND----LLGG 349

Query: 381 GII 383
           G +
Sbjct: 350 GFL 352


>gi|257125311|ref|YP_003163425.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
 gi|257049250|gb|ACV38434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
          Length = 364

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 201/380 (52%), Gaps = 29/380 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K   D +VVV MSGG+DSSV A LLK+ GY+VIGVTL+      +     +CC+  D+
Sbjct: 1   MNKKLDDKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR  C  + + HYV +  E F+  V+  F   Y AG+TP PCV C+  VK   L+   
Sbjct: 61  NDARYTCYNLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLVEFA 120

Query: 134 RQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++G   ++TGHY +   + + + D   R           +DQ+Y L+   +  +    F
Sbjct: 121 DKMGIKYISTGHYSKVSENNMLLWDKNNR-----------KDQTYMLYRLDKDIVERFLF 169

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PL + +K  VR++AR+ G+   +K DSQ ICF   G Y   +K++      +G+ V  NG
Sbjct: 170 PLAEYEKSEVREIARQNGIHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKNG 228

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +I+G H G   YTIGQRRGLG+ +G+P FV+ L   ++ V+VG  E L +  I +  IN+
Sbjct: 229 KIIGEHIGYQFYTIGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEELLIKEIEV--INY 286

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQA 364
                 E+ +  G K   + R S   +   +      + N++ +  +F++     + GQ 
Sbjct: 287 KFHYSLENII--GKKLTARPRFSSKGLTGELKILKNEESNENRIIFEFDEKTHENSEGQH 344

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY +D     ++GGG I 
Sbjct: 345 IVFYLNDE----IVGGGEIK 360


>gi|308062619|gb|ADO04507.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Cuz20]
          Length = 342

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  R   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDRVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|302522058|ref|ZP_07274400.1| tRNA methyl transferase [Streptomyces sp. SPB78]
 gi|302430953|gb|EFL02769.1| tRNA methyl transferase [Streptomyces sp. SPB78]
          Length = 382

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 145/385 (37%), Positives = 203/385 (52%), Gaps = 26/385 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQD 72
           + +P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D
Sbjct: 3   ETSPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 62  SRDARRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY  +R+    DG R   + R  D+ +DQSY L     +QL    FPL
Sbjct: 122 ALALGFDAVCTGHY--ARVLTHPDGSRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPL 177

Query: 193 GDMK--KESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN 249
           GD +  K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +
Sbjct: 178 GDTETTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA---EGDIVDES 234

Query: 250 GQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           G  LG H G   +TIGQR+GL +    A G+P +V+ +    + V VGPRESL+V  +  
Sbjct: 235 GTRLGTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
               W G      A +   +   ++R+      V  +   D + V F+    GVA GQA 
Sbjct: 295 VRPRWCG-----TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAV 349

Query: 366 VFYTSDSNEARVLGGGIISGSKRSD 390
           V Y    +  RV+G   I+ +++ +
Sbjct: 350 VLY----DGTRVVGSATIATTRKPE 370


>gi|194476611|ref|YP_002048790.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Paulinella chromatophora]
 gi|171191618|gb|ACB42580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Paulinella chromatophora]
          Length = 434

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 202/373 (54%), Gaps = 29/373 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P   ++ V +SGGVDSS+ AALL + G+ V G+TL L +       KG+CC+ + +
Sbjct: 38  LKNAPNKQKIAVGLSGGVDSSLAAALLVKAGWQVEGLTLWLMSG------KGTCCS-EGL 90

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132
            DA  +C+ +N+ H++ D  E F+  ++      Y +G TPLPC  CNR VKF  +L   
Sbjct: 91  LDAVGICEQLNIPHHIVDSREHFQKQIVAFLLRGYESGVTPLPCSRCNREVKFPLMLGWA 150

Query: 133 TRQLGADVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            R+ G   +ATGHY R         L +    K R  + R +D ++DQSYFL+  +Q+ L
Sbjct: 151 ERERGIRKIATGHYARIVDKEDELNLDIPGLSKGRYKLLRGVDYQKDQSYFLYDLSQEIL 210

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGD 244
             L FPLG++ K   R  A+   L+ A+K +SQD+C             +N+ + +  G+
Sbjct: 211 SSLIFPLGELTKVETRLEAKRYNLNTANKPESQDLCLADHHGSMKAF--LNSYLPSRTGE 268

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV  +G ILG H+GI ++T+GQR+GL +A  EPL+VV +D + ++VIVG R  +      
Sbjct: 269 IVLSDGTILGHHDGIEHFTVGQRKGLKIAWKEPLYVVKIDASRNQVIVGSRNDVAYKSCL 328

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQD-----PVPVFVQ-RNDDGVY---VDFEKS 355
           +  INW+     + A+    +  V+ RS  +     P+P  +  +N +  Y   + F  +
Sbjct: 329 VGAINWVSIAPPKKAI--DVEVQVRYRSKPEFARLIPLPFTITDQNAERPYRCRLIFHHN 386

Query: 356 EVGVASGQACVFY 368
           +  +  GQA VFY
Sbjct: 387 QFSITPGQAAVFY 399


>gi|223041130|ref|ZP_03611385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter rectus RM3267]
 gi|222877624|gb|EEF12750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter rectus RM3267]
          Length = 338

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 210/367 (57%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++++AMSGGVDS++ A +L   GY+V+G  ++L+      K+ G     Q++    R C
Sbjct: 1   MKILMAMSGGVDSTMGAKMLLEAGYEVVGCYMKLH------KKPGY--HEQNIGKVARAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + ++++V D ++ F   V  PF  +Y  G TP PC  CNR +KF +LL   + +G + 
Sbjct: 53  EYLGINYHVIDLQDEFDRYVYTPFVGAYKEGRTPNPCALCNRFIKFGELLKFAKSIGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHYIR +     DG  R       D  +DQSYF+    ++ + D+ FPLGD  K+ +
Sbjct: 113 LATGHYIRVQ-----DGLIR----VAADPSKDQSYFVAQVPKEIIADMIFPLGDKFKKDI 163

Query: 201 RDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LA+ +    +  ++++S +ICFV+   Y +V+ + +    L GD+V   G+++GRHNG
Sbjct: 164 KELAKSLPSFREYGEQAESSEICFVED-TYIEVLNK-HYETDLPGDVVDSAGRVIGRHNG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ +D  ++R++VGP+E LE  +I +  +N     LF 
Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLAIDAANNRIVVGPKEELERGKIAVNSLN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376
           D     F C VK+R     +   V+  + G   V+ ++S  GVASGQ  VFY  +     
Sbjct: 277 DE--SEFDCDVKVRYRSIGLNAHVKVLEGGTAEVELKQSAFGVASGQLAVFYRGE----L 330

Query: 377 VLGGGII 383
           V+G G I
Sbjct: 331 VIGSGFI 337


>gi|255322034|ref|ZP_05363184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter showae RM3277]
 gi|255301138|gb|EET80405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter showae RM3277]
          Length = 338

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 208/367 (56%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++++AMSGGVDS++ A +L   G++V+G  ++L+      ++        ++    R C
Sbjct: 1   MKILMAMSGGVDSTMSAKMLLEAGHEVVGCYMKLHKKPGYHEK--------NIDKVARAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + ++V D +E+F   V  PF SSY  G+TP PC  CN  +KF +LL   + +G + 
Sbjct: 53  GYLGIPYHVLDLQEQFDRYVYTPFVSSYKEGKTPNPCALCNHFIKFGELLKFAKSIGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHYIR +     DG  R       D  +DQSYF+    ++ + D+ FPLGD  K+ +
Sbjct: 113 LATGHYIRVQ-----DGLIR----VAADPSKDQSYFVAQVPKEIIADMIFPLGDKFKKDI 163

Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LA+ +    +  ++++S +ICFV+   Y +V+ + +    L GD+V   G+++GRH+G
Sbjct: 164 KELAKSLPSFREYGEQAESSEICFVED-TYIEVLNK-HYETDLPGDVVDSAGRVIGRHSG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ +D  ++R++VGP+E LE  +I +  +N     LF 
Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLAIDAQNNRIVVGPKEELERGKIAVNSLN-----LFV 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376
           D     F C VK+R     +   V+  D G   V+ ++S  GVASGQ  VFY  +     
Sbjct: 277 DE--SEFDCDVKVRYRSIGLNAHVKVLDGGTAEVELKQSAFGVASGQLAVFYRGE----L 330

Query: 377 VLGGGII 383
           V+G G I
Sbjct: 331 VIGSGFI 337


>gi|158319927|ref|YP_001512434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus oremlandii OhILAs]
 gi|205811148|sp|A8MEV9|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus oremlandii OhILAs]
          Length = 364

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 199/363 (54%), Gaps = 23/363 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD +VV+ MSGGVDSSV A LLK+ GYDV+G+ ++ ++    S   G C + +D 
Sbjct: 1   MSKAPKDTKVVIGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDE---SDELGYCTSAEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVCD I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVRRVCDQIGIPYYSVNFEKEYWDRVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY +       DG+ R  + R +D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 IKLGADYLATGHYAQVDY---SDGEYR--LLRGVDTNKDQTYFLNQLNQYQLSKAMFPVG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K+ +R +A + GL  A K DS  ICF+ +  + + +   N   A  G I+ L+G++ 
Sbjct: 173 HLQKKDLRQIALDAGLATASKKDSTGICFIGERNFKEFLS--NYLPAKPGKIISLDGEVK 230

Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLRE 307
           G+H+G++ YT+GQR+     G   GEP FVV   L+KN   V  G    SL    +   +
Sbjct: 231 GKHDGLMYYTLGQRKGLGIGGAGTGEPWFVVDKDLEKNILYVTQGETHPSLYSRGLIGAD 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           + W+     E+      KC  K R  Q    V V+V+  +    V F++ +  +  GQA 
Sbjct: 291 LQWVS----ENPKPSVIKCTAKFRYRQPDQGVTVYVEEGNT-CRVMFDEPQKAITPGQAV 345

Query: 366 VFY 368
           VFY
Sbjct: 346 VFY 348


>gi|183599450|ref|ZP_02960943.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827]
 gi|188021697|gb|EDU59737.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V+G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEEY---CSAATDLADAQSVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   +  + R +D  +DQSYFL+  +  Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSYAQIAKSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G+H G++
Sbjct: 180 RRIAEEVGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQHEGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D  ++R+IV      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGMKEGSDEPWYVVDKDVENNRLIVAQGHEHPR--LMSTGLIAQQLDW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + +    +C VK R  Q  +P  V   +DG V V F+     V  GQ+ VFY 
Sbjct: 296 VD----REPLTQTLRCAVKTRYRQADIPCTVTPLNDGKVEVIFDYPVAAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 DEV----CLGGGIIE 362


>gi|326381518|ref|ZP_08203212.1| tRNA-specific 2-thiouridylase MnmA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199765|gb|EGD56945.1| tRNA-specific 2-thiouridylase MnmA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 362

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 201/380 (52%), Gaps = 31/380 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-STAPGALRTGSRGCCSREDADDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F ++YAAGETP PC+ CN  +KFS L      LG 
Sbjct: 60  AADLLGIPFYVWDFADRFKEDVIDEFVAAYAAGETPNPCLSCNEKIKFSALAERAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L TGHY R       DG+ RR     +D ++DQSY L     QQL    FP+GD  K 
Sbjct: 120 DALVTGHYARLA-----DGELRRA----VDADKDQSYVLAVLDHQQLSRAMFPVGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGR 255
            +R+ A   GL +A+K DS DICF+  G    +      +  G  ++G      G  L  
Sbjct: 171 RIREEAERRGLAVANKPDSHDICFIPTGDTRAFLGARIGVRPGAVVDG----ATGDTLAE 226

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H+G+  +TIGQR+GLG+    A G P +V  +D +S  V VG    LEV  I      W 
Sbjct: 227 HDGVHGFTIGQRKGLGIEAPAADGHPRYVTGIDPDSGTVTVGTAADLEVTSISANRAVWT 286

Query: 312 GDGLFEDAVVDGFKCFVKIRSS---QDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367
                E  V    +C V++R+       V   V   D  G+ +D  +   GVA GQA V 
Sbjct: 287 SGRTPEGPV----ECIVQVRAHGGLAQAVATPVDTPDGPGIQIDLREPLRGVARGQAAVL 342

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  D+   +V+G G I+GS+
Sbjct: 343 YVPDAAGDQVIGCGRITGSE 362


>gi|325833497|ref|ZP_08165946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eggerthella sp. HGA1]
 gi|325485421|gb|EGC87890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eggerthella sp. HGA1]
          Length = 352

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 198/364 (54%), Gaps = 25/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ + MSGGVDS+V AALL R GY+V+GVT +  ++    +            DA  VC 
Sbjct: 6   RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAA---------ADAAAVCS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   +    F   V+ PF SSYAAG TP PCV CN   K   L+ V  +LG D +
Sbjct: 57  QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R +RL   D G  R ++ R +D  +DQSY L   +Q+QL  L  PLG M K  V
Sbjct: 117 ATGHYARIARL--SDSG--RFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL +A+K++SQD CF+ +G Y   ++      A  GDIV   G +LG H G+ 
Sbjct: 173 RVIAADLGLVVAEKAESQDNCFI-EGDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLA 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT+GQR+G+GVA  EP +VV     +  ++VG  +   +  + + ++NW     FE ++
Sbjct: 231 NYTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGDMNWQA---FE-SL 286

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            + +   VK+R    P    ++  DD  V +     +   A GQ  V Y  D+    VLG
Sbjct: 287 GESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLG 342

Query: 380 GGII 383
           GG+I
Sbjct: 343 GGMI 346


>gi|205822461|sp|A6W7K7|MNMA_KINRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 365

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 192/377 (50%), Gaps = 27/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V+GV + L N    + R GS  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  E F   V+  F + YAAG TP PCV CN  +KF+ LL     LG 
Sbjct: 60  AADLLGIPFYVWDLSEDFVEDVVADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D +ATGHY  +R+  G DG  R  + R  D  +DQSY L      Q+    FPLGD   K
Sbjct: 120 DAVATGHY--ARVVTGPDG--RAELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A K DS DICF+  G     +      +   G++V  +G++LG H 
Sbjct: 176 AEVRAEAERRGLPVASKPDSHDICFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHT 233

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQR+GLG+    A G P +V+ ++     V VGP E L V  +   E  W   
Sbjct: 234 GTYGYTVGQRKGLGISRPAADGRPRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW--- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVY-VDFEKSEVGVASGQACVFYT 369
               DA V   +  V++R+  +PVP   +     DD V  V       GVA GQ    Y 
Sbjct: 291 --NADAPVGPVEVHVQVRAHGEPVPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYR 348

Query: 370 SDSNEARVLGGGIISGS 386
                 RVLG   ISG+
Sbjct: 349 G----TRVLGSATISGT 361


>gi|326330731|ref|ZP_08197035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
 gi|325951572|gb|EGD43608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
          Length = 374

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/391 (39%), Positives = 197/391 (50%), Gaps = 46/391 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRVV AMSGGVDS+V AA  K  G+DV GV L L +   AS R G+  CC  +D  DARR
Sbjct: 3   MRVVAAMSGGVDSAVAAARAKEAGHDVTGVHLAL-SRNPASYRSGARGCCTIEDANDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  +RF   V+  F S YA G TP PC+ CN  +KF+ +L     LG 
Sbjct: 62  AADVIGIPFYVWDLSDRFHEDVVEDFMSEYAEGRTPNPCLRCNEKIKFAAVLDRALALGF 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY   R    +D      + R +D  +DQSY L    Q QL    FPLGD  K 
Sbjct: 122 DAVATGHYATLR----EDADGLVELHRAVDGGKDQSYVLGVLDQDQLRHSLFPLGDTPKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE----------GDIVHL 248
            VR+ A   GL +ADK DS DICFV  G         NAG   E          G IV  
Sbjct: 178 LVREEAARRGLLVADKPDSHDICFVADGD--------NAGWLREKLGDRAPNESGPIVDE 229

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G++LG H G   YTIGQR+GL +      G+P FV+ ++  S  V VGPRE L V  + 
Sbjct: 230 TGEVLGEHQGTYAYTIGQRKGLRLGKPAPDGKPRFVLDIEPVSGTVTVGPREHLAVDGLS 289

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-------VPVFVQRNDDGVYVDFEKSEV 357
                W G     + V++G    V++R+  D        VP      D  V ++      
Sbjct: 290 GIRPRWAGRA--PEGVLEG---TVQLRAHGDEHRARVTVVPTG-STTDAEVEIELLDPAY 343

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           G+A GQA V Y    +  RV+G   IS ++R
Sbjct: 344 GIAPGQAAVIY----DGTRVVGSATISTTRR 370


>gi|148242801|ref|YP_001227958.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. RCC307]
 gi|205828978|sp|A5GUP6|MNMA_SYNR3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147851111|emb|CAK28605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RCC307]
          Length = 383

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 203/383 (53%), Gaps = 33/383 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL+   + V G+TL L +       KG+CCA + +
Sbjct: 19  LQAWPGEHRVAVGLSGGVDSSLTAALLRDAQWQVEGLTLWLMSG------KGACCA-EGL 71

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132
            DA  +C+ + + H+V D  + F+  ++      Y  G TPLPC  CNR VKF  +L   
Sbjct: 72  VDAAGLCEELEIPHHVVDSRDTFQQEIVQFLVQGYGDGITPLPCSRCNRAVKFGPMLDWA 131

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++ G   +ATGHY  +RL    DG R +++ R +D  +DQSYFL+   Q  L  L FPL
Sbjct: 132 EKERGITRVATGHY--ARLRPNADGGRTQLL-RGLDARKDQSYFLYDLPQAVLQRLIFPL 188

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQ 251
           G++ K   R  A  +GL  A+K +SQD+C      +  +   ++A +    G+IV  +G+
Sbjct: 189 GELTKPDTRAEAARLGLRTAEKPESQDLCLADH--HGSMKAFLDAYLPERPGEIVLTDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G+H+GI ++TIGQR+GLGVA  EPL VV LD   ++V+V PR         +  +NW+
Sbjct: 247 VVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNQVVVAPRAEAARGDAVVGAVNWV 306

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY------VDFEKSEVGVA 360
                 D   +     V++R    P      P+    +D          +DF + +  + 
Sbjct: 307 SI----DPPAEPLDVEVQVRYRSAPERARLTPLPPVESDHQAERPHRCRLDFAEEQFSIT 362

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQA VFY  +      LGGG+I
Sbjct: 363 PGQAAVFYDGEV----CLGGGLI 381


>gi|253682565|ref|ZP_04863362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum D str. 1873]
 gi|253562277|gb|EES91729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum D str. 1873]
          Length = 346

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 38/370 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V + +SGGVDSSV A LLK  GYD+IG+T+++ +   +              DA ++  
Sbjct: 4   KVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVSE-------------DAAKIAQ 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +++ D  + F+N VI  FA  Y  G TP PC  CN+ +KF  LL   ++LGAD +
Sbjct: 51  KLDIPYHILDLRDEFKNHVIDNFAKEYLQGRTPNPCAMCNKYIKFGVLLQKAKELGADYI 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   + G     R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K  +R
Sbjct: 111 ATGHYARVEEHNG-----RYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQIR 165

Query: 202 DLAREMGLDIADKSDSQDICFV---QQGKYFDVVK---RINAGIALEGDIVHLNGQILGR 255
           ++AR + L++ DK +S DICF+     GKY   ++   RI       G+ V   G ILG+
Sbjct: 166 EIARNLDLEVHDKKESMDICFIPDNDHGKYIQSLECKDRIKP-----GNFVDKQGNILGK 220

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G+I YTIGQR+GLG+++G+P FVV +    + V+VG    +    +  ++IN++    
Sbjct: 221 HKGLIYYTIGQRKGLGLSLGKPGFVVDIIPERNEVVVGDESEIFNSGLIAKDINFIP--- 277

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D++ +  +   KIR S       +   ++G V V FE  +  +  GQ  VFY  D   
Sbjct: 278 -FDSLENPMEVEAKIRYSTTKSKATIIPFEEGKVKVVFEDKQRAITKGQRVVFYIQD--- 333

Query: 375 ARVLGGGIIS 384
             +LGGG I 
Sbjct: 334 -MLLGGGTIE 342


>gi|297380515|gb|ADI35402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori v225d]
 gi|308064111|gb|ADO05998.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Sat464]
          Length = 342

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|238897773|ref|YP_002923452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465530|gb|ACQ67304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 364

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 204/376 (54%), Gaps = 27/376 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N    +VVV MSGGVDSSV A LL   GY V G+ ++ +   +    +  C A  D+ D 
Sbjct: 3   NKNSKKVVVGMSGGVDSSVAAYLLLEQGYQVCGLFMKNW---EEDDNELYCAAAVDLSDT 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD +N+  +  ++   + N V   F + Y AG TP P + CN+ +KF   L    Q 
Sbjct: 60  QAVCDKLNIELHTVNFSAEYWNQVFTLFLAEYRAGRTPNPDILCNKEIKFKAFLEFALQD 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +   G     +  + R +D  +DQSYFL+   QQQL +  FP+G +
Sbjct: 120 LGADYIATGHYVRHQSNNG-----QHFLLRGIDENKDQSYFLYTIGQQQLANCLFPIGGL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK  VRD+A+++ L  A K DS  ICFV + K+ D + +  +G   +G I+ ++G+ +G+
Sbjct: 175 KKSEVRDIAKKLNLVNAQKKDSTGICFVGERKFRDFLSQYLSG--QKGSIMTVDGKHIGQ 232

Query: 256 HNGIINYTIGQRRGLGV--AMGE---PLFVVYLDKNSSRVIVG--PRESLEVHR-IYLRE 307
           H G++ +T+GQR+GLG+    GE   P +VV  D  ++ ++V   P   L + + +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKGEGEAPWYVVDKDIKNNILLVAQNPLHPLLMSKGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           ++W+            ++C +K R  Q+ +   +    D   V FE     V  GQ+ VF
Sbjct: 293 LHWVNS----PPTKSPYRCVLKTRYRQEDIRAEIIVEQDQSVVRFEHPVSSVTPGQSVVF 348

Query: 368 YTSDSNEARVLGGGII 383
           Y ++      LGGGII
Sbjct: 349 YQNE----LCLGGGII 360


>gi|46447434|ref|YP_008799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/
           antisuppressor [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626468|sp|Q6MA75|MNMA_PARUW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46401075|emb|CAF24524.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase/
           Antisuppressor [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 376

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 19/365 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV MSGGVDSSV A L+K  GY+VIG+ ++ +  +  +   G C + QD  D RRVCD 
Sbjct: 7   VVVGMSGGVDSSVSALLMKEQGYNVIGLFMKNWEEKDEN---GVCSSAQDYDDVRRVCDH 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           IN+ +Y  ++ E +R  V   F + +  G TP P + CNR +KF   L    +LGAD LA
Sbjct: 64  INIPYYAVNFVENYRKQVFTQFIADFQKGWTPNPDILCNREIKFKVFLEKALELGADFLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY ++ +   D G     + + +D  +DQ+YFL+   QQ L  + FP+G ++K  VRD
Sbjct: 124 TGHYCQNLIL--DKGSPS--LVKGIDHNKDQTYFLYTLNQQILQQVLFPVGGLEKSQVRD 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIIN 261
           +AR+  L  A+K DS  ICF+ +  +   + +    +A++ G    L G+ +G+H G   
Sbjct: 180 IARKHQLVTAEKKDSTGICFIGERDFRSFLSQY---VAIQPGAFQTLQGKNVGKHMGTAY 236

Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           YT+GQR+GLG+   GE  FVV   K+  R IV   +      +Y  E+         +A 
Sbjct: 237 YTLGQRKGLGIGGAGEAWFVV--GKDHERGIVFVEQGANHPALYCDELIATDLSWVAEAP 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           +  + C  K+R  Q+     + R ++G  +V F++ +  V  GQ+ VFY  +      LG
Sbjct: 295 LLPYTCQSKVRYRQNDQFCTIHRIENGKAFVTFDRPQRAVTPGQSIVFYVGNI----CLG 350

Query: 380 GGIIS 384
           GG+I 
Sbjct: 351 GGVIQ 355


>gi|239982445|ref|ZP_04704969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces albus J1074]
 gi|291454292|ref|ZP_06593682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces albus J1074]
 gi|291357241|gb|EFE84143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces albus J1074]
          Length = 381

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 205/392 (52%), Gaps = 26/392 (6%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--C 67
            S   +  P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  C
Sbjct: 4   TSPRTENPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGC 62

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C  +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+
Sbjct: 63  CTIEDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFA 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            LL     LG D + TGHY  + +   +DG R   + R  D+ +DQSY L    ++QL  
Sbjct: 123 ALLDKALALGFDAVCTGHY--ATVVTREDGSRE--LHRASDMAKDQSYVLGVLDERQLAH 178

Query: 188 LRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGD 244
             FPLGD    K+ +R  A   GL +A K DS DICF+  G     +  R+      EGD
Sbjct: 179 ALFPLGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLAGRLGTA---EGD 235

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           I+   GQ +G H G   YTIGQR+GL +    A G+P +V+ +    + V VGP  +L+V
Sbjct: 236 ILDEAGQKVGTHEGAYGYTIGQRKGLRIGTPAADGKPRYVLDISPVDNTVTVGPAAALDV 295

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             +      W G            +   ++R+  +  PV  +  +  + V F++   GVA
Sbjct: 296 TGLTAIRPRWCG-----TPPEGSGRYTAQLRAHGEETPVTAEVREGELTVTFDEPVRGVA 350

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            GQA V Y    + +RV+G   I+ ++R+ AV
Sbjct: 351 PGQAVVLY----DGSRVVGSATIAATRRAGAV 378


>gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
 gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
          Length = 365

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 198/373 (53%), Gaps = 22/373 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +  +  +   G C + +D  D   
Sbjct: 2   RNKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDDN---GVCMSEEDYKDVVA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L    ++GA
Sbjct: 59  VAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDYAMKIGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R  ++   DGK + +M R +D  +DQ+YFL    Q+QL  + FP+G+  K 
Sbjct: 119 DHVATGHYARI-IHEEKDGKIKSVMLRGIDDNKDQTYFLCQLNQKQLEKVLFPIGEYTKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A +  L  A K DS  ICF+ +  + + + +     A  G+IV   G  LG+HNG
Sbjct: 178 QIREIAEKYNLKTAKKKDSTGICFIGERDFNEFLSKYLP--AKTGNIVDTKGNTLGKHNG 235

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++ YTIGQR+G+G+       GEP FVV   LD N   V  G    L    +   + N++
Sbjct: 236 LMYYTIGQRKGIGIGNTKEGTGEPWFVVDKNLDTNELIVTQGDNSVLYSKGLIATDFNFI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +D +    +C VK R  Q D   V  + ND+   + F++ +  +  GQ  V Y  
Sbjct: 296 N----KDELQFPLECTVKFRYRQKDAGAVINKLNDNEYEIIFDEPQKAITLGQIAVVYKG 351

Query: 371 DSNEARVLGGGII 383
           +      LGGG+I
Sbjct: 352 E----ECLGGGVI 360


>gi|119503231|ref|ZP_01625315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2080]
 gi|119460877|gb|EAW41968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2080]
          Length = 363

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 198/380 (52%), Gaps = 30/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           NP    V+V MSGGVDSSV A LL+  GY V G+ ++ ++    +     C A +D+ DA
Sbjct: 3   NPSPSTVIVGMSGGVDSSVAALLLRDQGYRVEGLFMKNWDEDDGTDY---CTAKEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V  ++ +  +  ++   + + V   F + Y +G TP P + CNR +KF   L    +L
Sbjct: 60  EAVAASLGIKLHSANFAAEYWDGVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYATEL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY+R      DD   R  + + +D ++DQSYFL     ++L    FP+GD+ 
Sbjct: 120 GADFIATGHYVRR-----DDSGERTALLKGLDPDKDQSYFLHQVGHRELSRSLFPVGDLA 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G I   NGQ LG H
Sbjct: 175 KPEVRKIAEQAGLTTARKKDSTGICFIGERRFKDFLQQYLP--AQPGVIEDTNGQALGEH 232

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVG---PRESLEVHRIYLR 306
            G++ +TIGQR+GLG+         P +VV  ++++N   V  G   PR  L  H ++  
Sbjct: 233 QGLMYHTIGQRQGLGIGGLADRNAAPWYVVEKHVERNVLIVAQGNDHPR--LYKHSLHAS 290

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            + W+     E A     +C  K+R  Q      V +   G  V+F+  +  +  GQ+ V
Sbjct: 291 TLFWIS----EQAPTFPLQCTAKVRYRQPDQSCVVTKTASGFLVEFDVPQRAITPGQSVV 346

Query: 367 FYTSDSNEARVLGGGIISGS 386
           FY +D+     +GGGII G+
Sbjct: 347 FYHNDT----CMGGGIIEGA 362


>gi|224372387|ref|YP_002606759.1| tRNA-specific 2-thiouridylase MnmA [Nautilia profundicola AmH]
 gi|223589875|gb|ACM93611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nautilia profundicola AmH]
          Length = 341

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 201/369 (54%), Gaps = 34/369 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDS++   LLK  GYDV+G+ ++++               ++V    R+  
Sbjct: 4   RVLVGVSGGVDSAMSVYLLKEQGYDVVGIYMKMHEGVNHV---------ENVAKLNRLSK 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +   + + D E+ FR  V   F  SY  G TP PC  CN  +KF   +    + G ++ 
Sbjct: 55  KLGFEYVIEDVEDEFRKEVYEYFVESYKQGITPNPCAMCNIKIKFGIFMGFLEKYGCELA 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R      +DG+    + +  D  +DQSYFLF   ++ L  + FPLG+  K+ ++
Sbjct: 115 ATGHYVR------NDGE---FLYQAKDQSKDQSYFLFGIKKKVLPKILFPLGEYTKDEIK 165

Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            LA E+GLD  A + +SQDICF+    Y DV+K ++     +G +V+  GQ +G H G  
Sbjct: 166 KLASEIGLDEFASQKESQDICFIDNS-YIDVLK-LHFNPERKGKVVNKRGQKIGVHKGYS 223

Query: 261 NYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQR+G  +    +P +V+ +D  S+ +IVG ++ LE  +++L+ +N     LF D 
Sbjct: 224 FYTVGQRKGFNLFKSHKPQYVIGIDAKSNTLIVGDKKDLEKKQVFLKGVN-----LFIDD 278

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V  F+C  KIR     VP  V+  +     V+F +   GVA GQACVFY  +    ++L
Sbjct: 279 KV--FECEAKIRYRAPKVPAVVKMESKSKAVVNFHEPVSGVAKGQACVFYEGE----KLL 332

Query: 379 GGGIISGSK 387
           GGG I G +
Sbjct: 333 GGGWIRGGR 341


>gi|299143928|ref|ZP_07037008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518413|gb|EFI42152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 355

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 190/364 (52%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ MSGGVDSSV AALLK  GYDV  V ++ ++        G C A +D  D  RVC  
Sbjct: 7   VILGMSGGVDSSVCAALLKEQGYDVTAVFMKNWDEEDDD---GVCTATEDYLDVIRVCSE 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + +Y  ++E+ +++ V   F S Y  G TP P V CN  +KF   L    +  +D +A
Sbjct: 64  LGIKYYTVNFEKEYKDRVFSYFLSEYEKGRTPNPDVMCNTEIKFKAFLEFAMKFNSDYIA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            GHY R+   +  DGK    + R +D  +DQSYFL    +  L    FP+G+MKKE VR+
Sbjct: 124 MGHYART---LKKDGK--TYLLRGLDENKDQSYFLSRVPEAALSKTLFPIGNMKKEQVRE 178

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA++  L  A K DS  ICF+ +  + + + +       EGDI  ++GQ LG+H+G+++Y
Sbjct: 179 LAQKYNLATAKKKDSTGICFIGERNFNNFLDKF--LFTKEGDIYSVDGQYLGKHSGLMHY 236

Query: 263 TIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           TIGQRR     G+  GEP FV   D  ++R+IV   + L+   +Y +E          D 
Sbjct: 237 TIGQRRGMGLGGMGSGEPFFVADKDLKNNRLIVA--QGLKHPALYKKETICENAFWITDT 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                KC  KIR       + V   +D + V FE    GV  GQ  VFY  D      LG
Sbjct: 295 PKFPLKCTGKIRYRAKDENMTVYLENDELKVIFENPLKGVTPGQVLVFYQGDI----CLG 350

Query: 380 GGII 383
            GII
Sbjct: 351 SGII 354


>gi|317178074|dbj|BAJ55863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F16]
          Length = 342

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|315587224|gb|ADU41605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 35A]
          Length = 342

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|146282652|ref|YP_001172805.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri A1501]
 gi|166235074|sp|A4VLW2|MNMA_PSEU5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145570857|gb|ABP79963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas stutzeri A1501]
          Length = 375

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 198/377 (52%), Gaps = 32/377 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+
Sbjct: 9   PEKTRVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTEY---CTAKEDLADAQ 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LG
Sbjct: 66  AVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLG 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +QL    FP+G+++K
Sbjct: 126 ADLIATGHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELEK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I  ++G+++GRH+
Sbjct: 181 PEVRAIAEKHSLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIEAVDGEVIGRHH 238

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +TIGQR+GLG+     A  EP +V+  D   + +IVG       L    +   EI 
Sbjct: 239 GLMYHTIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEIY 298

Query: 310 WLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           W+         VD     K   K+R  Q      +++  DG    FE  +  V  GQ+ V
Sbjct: 299 WVNP-------VDLSAPLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGII 383
           FY  +      LGGG+I
Sbjct: 352 FYDGEV----CLGGGVI 364


>gi|57241962|ref|ZP_00369902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis RM3195]
 gi|57017154|gb|EAL53935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis RM3195]
          Length = 338

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 202/369 (54%), Gaps = 36/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK+ G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKKAGHEVIGCYMKLHGKPGYHE--------ENIAKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +++ D +E F+  V +PF ++Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY  +RL  G        +   +D  +DQSYFL    ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHY--ARLENG-------CIKVAVDESKDQSYFLANADKEALQYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y DV+++      ++G+++  +G+++G HNG
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEN-TYVDVLEQF-MDTKIKGEVLDSSGKVVGEHNG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P FV+ ++   ++++VG +E L++    L  IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHDPHFVLKINPKENQIVVGTKEELKIKEFKLENINLFIDK--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 F C VKIR     VP  V V  N +   +  ++   G+ASGQ  VFY  D    
Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNA-QISLKEPVYGLASGQMAVFYEED---- 329

Query: 376 RVLGGGIIS 384
           RV+  G IS
Sbjct: 330 RVIASGFIS 338


>gi|118496723|ref|YP_897773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida U112]
 gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida FTE]
 gi|166234853|sp|A0Q454|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella novicida U112]
 gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida FTE]
          Length = 359

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+R  V +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL F2-208]
          Length = 371

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 200/383 (52%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP   V  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWXXVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D       GGG I    ++ A
Sbjct: 347 DGDI----CFGGGTIDTVWKNGA 365


>gi|150391390|ref|YP_001321439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus metalliredigens QYMF]
 gi|205811141|sp|A6TUB2|MNMA_ALKMQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149951252|gb|ABR49780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus metalliredigens QYMF]
          Length = 369

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/383 (35%), Positives = 202/383 (52%), Gaps = 25/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD +VV+ MSGGVDSSV A  LK  GYDVIG+ ++ ++        G C A +D 
Sbjct: 1   MKKDPKDTKVVIGMSGGVDSSVAALKLKEQGYDVIGIFMKNWDE---PDEYGYCTAAEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  EDVRRVCEQIGIPYYTVNFEKEYWEKVFQYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY +       DG+ R  + R +D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 LKLGADYLATGHYAQVDY---KDGEYR--LLRGVDSNKDQTYFLNTLGQYQLSKAMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K+ VR++A    L  A K DS  ICF+ +  + + + +     A  G++  L+G + 
Sbjct: 173 HIDKKKVREMALAHDLVTAKKKDSTGICFIGERNFKEFLSQYLP--AQPGEMRDLSGNVK 230

Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLD-KNSSRVIVGPRE--SLEVHRIYLRE 307
           G+H+G++ +T+GQR+     G   GEP FVV  D KN+   +V   +  SL  + +   +
Sbjct: 231 GKHDGLMYHTLGQRKGLGIGGSGSGEPWFVVSKDLKNNILYVVQGEDHPSLYTYGLLATD 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           ++W+     E  +   F C  K R  Q    V VQ    D   V F+  +  V  GQA V
Sbjct: 291 LHWVS----EKEIPQTFTCTAKFRYRQPDQNVTVQLTGGDTCKVLFDGPQKAVTPGQAVV 346

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  ++     LGGGII  + ++
Sbjct: 347 FYNGEA----CLGGGIIDETIKT 365


>gi|317490186|ref|ZP_07948674.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA]
 gi|316910680|gb|EFV32301.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA]
          Length = 352

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 194/364 (53%), Gaps = 25/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ + MSGGVDS+V AALL R GY+V+GVT +  ++    +             A  VC 
Sbjct: 6   RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAAD---------AAAVCS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   +    F   V+ PF SSYAAG TP PCV CN   K   L+ V  +LG D +
Sbjct: 57  QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R +RL   D G  R ++ R +D  +DQSY L   +Q+QL  L  PLG M K  V
Sbjct: 117 ATGHYARIARL--SDSG--RFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL +A+K++SQD CF+ +G Y   ++      A  GDIV   G +LG H G+ 
Sbjct: 173 RVIAADLGLVVAEKAESQDNCFI-EGDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLA 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT+GQR+G+GVA  EP +VV     +  ++VG  +   +  + +  +NW        A+
Sbjct: 231 NYTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNWQA----YPAL 286

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            + +   VK+R    P    ++  DD  V +     +   A GQ  V Y  D+    VLG
Sbjct: 287 GESYDAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLG 342

Query: 380 GGII 383
           GG+I
Sbjct: 343 GGMI 346


>gi|305432523|ref|ZP_07401685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
 gi|304444562|gb|EFM37213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
          Length = 338

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 201/367 (54%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVIGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P FV+ ++   +++IVG +E L+++   L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V  +DD    +  ++S  G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 331 VIASGFI 337


>gi|226330495|ref|ZP_03806013.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
 gi|225201290|gb|EEG83644.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 202/372 (54%), Gaps = 28/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V+G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASTDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  Y  ++   + + V   F S Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELYTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   +  + R +D  +DQSYFL+  + +Q+    FP+G+M+K  V
Sbjct: 125 IATGHYVRRR-----DINGKSQLLRGVDNNKDQSYFLYTLSHEQIAQSLFPVGEMEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G H G++
Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIITVDGETIGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVS 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                + + + F+C VK R  Q  +   V   ++D + V F+     V  GQ+ VFY  +
Sbjct: 298 ----REPITEAFRCTVKTRYRQPDIACTVTPLSEDKIEVRFDYPVAAVTPGQSAVFYQDE 353

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 354 V----CLGGGII 361


>gi|169825283|ref|YP_001692894.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia
           magna ATCC 29328]
 gi|205816864|sp|B0S3R4|MNMA_FINM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167832088|dbj|BAG09004.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia
           magna ATCC 29328]
          Length = 366

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 203/353 (57%), Gaps = 20/353 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  DA  V 
Sbjct: 6   IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVCTAEEDYKDAVAVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +LGAD 
Sbjct: 63  NEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKLGADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+  GDDG +   + R +D  +DQ+YFL   TQ+Q+ ++ FP+G+++K+ V
Sbjct: 123 VATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQEQIKNVMFPVGELQKKEV 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+HNG++
Sbjct: 178 REIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKHNGLM 235

Query: 261 NYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLF 316
            +TIGQRRGLG+   G   FV   +  ++ +IV   E    L  +++Y  +     + L 
Sbjct: 236 YHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQFETSLNHLD 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +     F C  K R  Q  +   V+  DD  V V ++ ++  V  GQA VFY
Sbjct: 296 RNE----FDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDTK-AVTPGQAAVFY 343


>gi|283955448|ref|ZP_06372946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793075|gb|EFC31846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 338

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G+++IG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEIIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTALDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++   G+++G+H G
Sbjct: 164 KKFASTIEILKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDNTGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFSLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+ +DD    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIHDDKSAKITLKDPVYGLASGQMAVFYDDD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|330466187|ref|YP_004403930.1| tRNA-specific 2-thiouridylase MnmA [Verrucosispora maris AB-18-032]
 gi|328809158|gb|AEB43330.1| tRNA-specific 2-thiouridylase MnmA [Verrucosispora maris AB-18-032]
          Length = 351

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 196/366 (53%), Gaps = 24/366 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA   + G+DV GV L L  + + + R G+  CC  +D  DARR  D + 
Sbjct: 1   MSGGVDSAVAAARAVQAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRAADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  +RF   V+  F + YAAG TP PC+ CN  +KF+ +L     LG D + TG
Sbjct: 60  IPFYVWDMADRFHADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H+ R    +G DG    ++ R +D  +DQSY L   T++QL    FPLGD  K  VR  A
Sbjct: 120 HHAR----LGPDG----LLRRSVDEAKDQSYVLAVLTREQLDRSMFPLGDSTKAQVRQEA 171

Query: 205 REMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRHNGIINY 262
            E GL +ADK DS DICF+  G     + +R+       GD+V    G ++G+H G   Y
Sbjct: 172 AERGLAVADKPDSHDICFIADGDTRGFLAQRLGES---PGDVVDATTGAVVGQHAGAYAY 228

Query: 263 TIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           TIGQRRGL +      G P +V+ +   ++ V VGP E+LEV  +      W G    E 
Sbjct: 229 TIGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALEVSTVSATRPVWTGGARPEQ 288

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +    +C V++R+    VP  V  + D ++ D  +   GVA+GQA V Y  D     VL
Sbjct: 289 PI----ECEVQLRAHGVVVPAVVTVDGDRLHADLRRPVRGVAAGQAIVAYRPDPAGDIVL 344

Query: 379 GGGIIS 384
           G   I+
Sbjct: 345 GSATIT 350


>gi|85059063|ref|YP_454765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sodalis glossinidius str. 'morsitans']
 gi|123519587|sp|Q2NU15|MNMA_SODGM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84779583|dbj|BAE74360.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sodalis glossinidius str. 'morsitans']
          Length = 369

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 205/378 (54%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +        +  C A  D+ DAR VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYRVEGLFMKNWEE---DDNEEYCTAASDLADARAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
           T+ ++ +  ++   + + V   F + Y  G TP P + CN+ +KF   L      LGAD 
Sbjct: 65  TLGIALHTVNFAAEYWDNVFAHFLAEYQVGRTPNPDILCNKEIKFKAFLEFADDDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+     QL    FP+G++ K  V
Sbjct: 125 IATGHYVR-RADV--NGKSR--LLRGLDDNKDQSYFLYTLGHAQLARCLFPIGELAKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R        G IV ++GQ +GRH G++
Sbjct: 180 RRIAADLGLATAAKKDSTGICFIGERKFRDFLGRYLP--VQPGAIVSVDGQEVGRHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D + +R+IV      PR  L    +   +++W
Sbjct: 238 YHTLGQRKGLGIGGTRDGSEDPWYVVDKDLDHNRLIVAQGHQHPR--LMSTGLTAGQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VKIR  Q  +   V    DG + V F++    V  GQ+ VFY 
Sbjct: 296 VE----REPLTEALRCTVKIRYRQPDIACLVTPQADGRLQVTFDQPVTAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIISGSK 387
           ++    R LGGGII   +
Sbjct: 352 AE----RCLGGGIIEARQ 365


>gi|291004692|ref|ZP_06562665.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 356

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 194/369 (52%), Gaps = 21/369 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G++V+GV L L +++  + R G+  CC  +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ ERF   VI  F   YAAG TP PC+ CN  +KF  LL     LG D + TG
Sbjct: 60  IPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY  +RL V +DG    ++ R  D  +DQSY L + T +QL    FPLGD  K  VR  A
Sbjct: 120 HY--ARLTV-EDGV--PVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NGQILGRHNGIINY 262
            E GL +A K DS DICF+  G   D  K + + +  + G +V    G +LG H G+  +
Sbjct: 175 AERGLAVAKKPDSHDICFIPDG---DTKKFLESKLGQKPGQLVDAETGAVLGEHTGVHGF 231

Query: 263 TIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           T+GQR+GLG+      G P +V+ L+  S  V VG  + L V  I  +   W      + 
Sbjct: 232 TVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIWPSQRELDG 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                 +C V++R+         +  D G+ +   +   GVA GQA V Y  +     VL
Sbjct: 292 PT----ECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVL 347

Query: 379 GGGIISGSK 387
           G  +I+ ++
Sbjct: 348 GSALIAATR 356


>gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 369

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 199/368 (54%), Gaps = 20/368 (5%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDSSV A LLK++GYDV G+ ++ ++    +   G C A  D  DA +VC+ I +
Sbjct: 14  GVSGGVDSSVAALLLKKEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
            +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + LGAD LATGH
Sbjct: 71  PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R      D  +    M R +D  +DQ+YFL   +Q Q+ D+ FP+GD+ K+ VR +A+
Sbjct: 131 YARV-----DRSEGETKMLRGLDSNKDQTYFLSQLSQDQIKDVLFPVGDLDKKEVRKIAK 185

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E  L  ADK DS  ICF+ +  + + +   N   A EG+IV  +G I+G+H G++ +TIG
Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLS--NYLPAKEGNIVDTDGNIMGKHYGLMYHTIG 243

Query: 266 QRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGLG+   GE  FV   D   + +IV      E L  +R+    ++     + +  + 
Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLS----SISKKGLK 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
             F C  K R  Q  +   V+  DDG V + ++K++  V  GQA VFY  +      +  
Sbjct: 300 KEFDCTCKFRYRQKDINSHVKILDDGRVEITYDKTKA-VTPGQAAVFYDGEVCLGSCIID 358

Query: 381 GIISGSKR 388
            + +G KR
Sbjct: 359 EVYNGEKR 366


>gi|317014725|gb|ADU82161.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           Gambia94/24]
          Length = 342

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    QLG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  R   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDRVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKKG-----EYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria grayi DSM 20601]
 gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria grayi DSM 20601]
          Length = 370

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 201/383 (52%), Gaps = 43/383 (11%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+  ++RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  D
Sbjct: 2   KDNSNIRVVVGMSGGVDSSVTAYLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV + I + +Y  ++E+++ + V   F + Y  G TP P V CN+ +KF   L     
Sbjct: 59  VIRVANQIGIPYYAVNFEKQYWDKVFTYFLAEYKLGRTPNPDVMCNKEIKFKAFLEHAES 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R+ +    DG+ +  + R +D  +DQ+YFL   +Q+QL  + FPLG M
Sbjct: 119 LGADYVATGHYARTEIV---DGEVQ--LLRGVDNNKDQTYFLNQLSQEQLSKVMFPLGGM 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VRD+A++ GL  A+K DS  ICF+ +  +   +       A  G++  L G+ +G+
Sbjct: 174 EKSEVRDIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLTGKRMGK 231

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H+G++ YTIGQR GLG+   GEP FV   D  ++ + V              E  +  D 
Sbjct: 232 HDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLENNVLFV--------------EQGFHHDS 277

Query: 315 LFEDAVVDG-------------FKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVA 360
           L+ D ++               F C  K R  Q    V V   ++G   V F++    + 
Sbjct: 278 LYSDMLIATDVSFTSNRPKEMVFHCTAKFRYRQVDSGVTVYLTENGTAKVVFDEPVRAIT 337

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQA VFY  D      LGG  I
Sbjct: 338 PGQAVVFYDGDI----CLGGATI 356


>gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella novicida FTG]
 gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella novicida FTG]
          Length = 359

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+R  V +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|296270802|ref|YP_003653434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobispora bispora DSM 43833]
 gi|296093589|gb|ADG89541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobispora bispora DSM 43833]
          Length = 362

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 199/362 (54%), Gaps = 26/362 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA +  +G++V+GV L L  + + S R G+  CC  +D  DA
Sbjct: 5   RKLRVLAAMSGGVDSAVAAARIAEEGHEVVGVHLALSPNPR-SHRVGARGCCTLEDARDA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERF   V+  F S YAAG TP PC+ CN  +KFS +L     L
Sbjct: 64  RRAADVIGIPFYVWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFSAVLDRALAL 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGH+  +RL  G       ++ R +D  +DQSY L   T++QL    FPLG   
Sbjct: 124 GFDAVATGHH--ARLIDG-------VLRRSVDASKDQSYVLGVLTREQLKHAIFPLGGST 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIV-HLNGQIL 253
           K  VR  A   GL +ADK DS DICF+  G  + F + +R+      EG IV  L G++L
Sbjct: 175 KAEVRAEAARRGLAVADKPDSHDICFIADGDTRAF-LAERLGTA---EGPIVDALTGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G H G   +TIGQR+GLG+      G P +V+ ++  S+ V VGPR  L+V RI      
Sbjct: 231 GTHRGAYGFTIGQRKGLGLERPAPDGRPRYVLSIEPVSNTVKVGPRSRLQVTRIIGERPV 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W G  + E    +   C V++R+  +         +  +++D +    GVA GQA V Y 
Sbjct: 291 WNGP-VAEP--YEPITCSVQLRAHGEVYGCRAWVEEGRLHIDLDTPAYGVAPGQAAVLYQ 347

Query: 370 SD 371
            D
Sbjct: 348 DD 349


>gi|312140513|ref|YP_004007849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu
           [Rhodococcus equi 103S]
 gi|311889852|emb|CBH49169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Rhodococcus equi 103S]
          Length = 362

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 192/375 (51%), Gaps = 37/375 (9%)

Query: 31  VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88
           +DS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DA+R  D + +  Y
Sbjct: 1   MDSAVAAARAVEAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKRAADVLGIPFY 59

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148
           V+D+ +RF+  VI  F  SYAAGETP PC+ CN  +KF+ L      LG D +ATGHY R
Sbjct: 60  VWDFADRFKEDVIDDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGFDAVATGHYAR 119

Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                 +DG+ RR     +D ++DQSY L   T  QL    FP+GD  KE +R+ A   G
Sbjct: 120 L-----EDGELRRA----VDADKDQSYVLAVLTADQLSRAMFPVGDTPKEQIREEAAARG 170

Query: 209 LDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           L +A+K DS DICF+  G    +      I  G  ++ D     G++L +H G+  +TIG
Sbjct: 171 LAVANKPDSHDICFIPSGDTRAFLGARIGIRPGAVVDAD----TGEVLAQHEGVHGFTIG 226

Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GLGV    A G+P +V  ++  +  V VG    L+V  I      W      E  + 
Sbjct: 227 QRKGLGVQGPAADGQPRYVTAIEPETGTVRVGSAARLDVWTITAERAIWTSGQAPEGPI- 285

Query: 322 DGFKCFVKIRSSQDPVPVFVQR----------NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              +C V++R+         +            D G+ V   +   GVA GQA V Y  D
Sbjct: 286 ---ECIVQVRAHGGTARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAKGQAVVLYRPD 342

Query: 372 SNEARVLGGGIISGS 386
            +   V+G G I+G+
Sbjct: 343 EDGDVVIGSGTIAGT 357


>gi|317013122|gb|ADU83730.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           Lithuania75]
          Length = 342

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGKTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P   FV   D  + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAFVSLKDGMIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|219559055|ref|ZP_03538131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis T17]
          Length = 396

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/360 (39%), Positives = 194/360 (53%), Gaps = 26/360 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G++V+GV + L  +   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHEVVGVHMALSTA-PGTLRTGSRGCCSKEDAADARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG D +ATG
Sbjct: 60  IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K  +R  A
Sbjct: 120 HYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
              GL +A+K DS DICF+  G  K F + +RI       G +V  +G +L  H+G+  +
Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGF 226

Query: 263 TIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +   G    
Sbjct: 227 TIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPS 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D     VL
Sbjct: 286 GPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVL 342


>gi|194334691|ref|YP_002016551.1| tRNA-specific 2-thiouridylase MnmA [Prosthecochloris aestuarii DSM
           271]
 gi|194312509|gb|ACF46904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prosthecochloris aestuarii DSM 271]
          Length = 362

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 25/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+V +SGGVDS+V A LL   GY V G+ ++ L +S  +++   S     D+ + R    
Sbjct: 10  VIVGLSGGVDSAVAACLLIEQGYSVTGLHIRTLDDSPDSAELVASTLVVSDLDEYRFPVF 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++N+S+        FR  VI+ F   Y AG+TP PC  CN+ +K+  LL   +  GA+ +
Sbjct: 70  SLNLSN-------SFREHVIMTFQKDYLAGKTPNPCTLCNKLIKWEGLLKGAQLCGAEYV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   D   R   + + +D ++DQSYFL+   ++ L    FPLG+  K  VR
Sbjct: 123 ATGHY--ARIQHSDSSCR---LLKGVDNKKDQSYFLWMLGRKTLEKTLFPLGEYSKPEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258
            LAR  G+  A+K++SQ+ICFV    Y   +K    G+      GDI+   G ++G H G
Sbjct: 178 QLARRFGIRAAEKTESQEICFVGDNNYRQFLKSSIPGLEQSVQGGDIIDEEGSVIGHHTG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQR+GLG++  EPL+V  +D   +R+ VG ++ L   R+   ++NW+G    E 
Sbjct: 238 YPFYTIGQRKGLGISSSEPLYVTTIDPKRNRIHVGGKQKLACSRLKAGQLNWIGIAPPER 297

Query: 319 AVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    K   +IR   Q+     +  + D + V F++ +  V  GQA VFY    +E  +
Sbjct: 298 PL----KALGRIRYRDQESACTIIPLDGDRIEVLFDEPKNAVTPGQAIVFY----HEEEL 349

Query: 378 LGGGIISGS 386
           LGGG+I+ +
Sbjct: 350 LGGGVITAA 358


>gi|56460418|ref|YP_155699.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina loihiensis L2TR]
 gi|73920125|sp|Q5QYZ7|MNMA_IDILO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56179428|gb|AAV82150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 371

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA +VC+
Sbjct: 7   KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAASDDLADAEKVCE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
           T+ +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 64  TLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEALDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK    M R +D  +DQSYFL+  + + +    FP+G+++K  V
Sbjct: 124 IATGHYVRRQQ---RDGKWE--MLRGLDSNKDQSYFLYTLSHEHIAQTLFPVGELEKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  ADK DS  ICF+ + K+ D +++     A  G I  + G+ LG H G++
Sbjct: 179 RRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AKPGPIESVEGEALGEHEGLM 236

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR-----EINW 310
            +T+GQR+GL +       GEP +VV  DK+  R ++   +  +  R+Y +     +++W
Sbjct: 237 YHTLGQRKGLHIGGMADNSGEPWYVV--DKDVERNVLIVAQGKKHPRLYSQGLIAGQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +      +A  + F C VK R  Q  +P  V    +G + V F++    V  GQ+ VFY+
Sbjct: 295 VS----RNAPPEAFDCTVKTRYRQQDIPCRVTPLSNGDFQVQFKEPVAAVTPGQSAVFYS 350

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 351 DDV----CLGGGIIE 361


>gi|260889979|ref|ZP_05901242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia hofstadii F0254]
 gi|260860585|gb|EEX75085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia hofstadii F0254]
          Length = 371

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 200/382 (52%), Gaps = 31/382 (8%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +++K   + +VVV MSGG+DSSV A LLK+ GY+VIGVTL+      +     +CC+  D
Sbjct: 6   EMNKKLDEKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDD 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DAR  C T+ + HYV +  E F+  V+  F   Y AG+TP PCV C+  VK   LL  
Sbjct: 66  INDARYTCYTLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLLEF 125

Query: 133 TRQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             ++G   ++TGHY +   + + + D   R           +DQ+Y L+   +  +    
Sbjct: 126 ADKMGIKYISTGHYSKVSENNMLLWDKNNR-----------KDQTYMLYRLDKDVVERFL 174

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPL + +K  VR++AR+ G+   +K DSQ ICF   G Y   +K++      +G+ V  N
Sbjct: 175 FPLAEYEKSEVREIARQNGVHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKN 233

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+I+G H G   YT+GQRRGLG+ +G+P FV+ L   ++ V+VG  E L      ++EI 
Sbjct: 234 GKIIGEHIGYQFYTVGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEEL-----LIKEIE 288

Query: 310 WLGDGLFED-AVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASG 362
            +      D   + G K   + R S   V   +      + N++ +  +F++     + G
Sbjct: 289 VINRKFHYDLKEIIGKKLTARPRFSSKGVVGKLKLLKSEKSNENRIIFEFDEKTHENSEG 348

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q  VFY  +     ++GGG I 
Sbjct: 349 QHIVFYLDNE----IVGGGEIK 366


>gi|253989217|ref|YP_003040573.1| tRNA -specific 2-thiouridylase MnmA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780667|emb|CAQ83829.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus asymbiotica]
          Length = 367

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW---EEDDNEEYCSAATDLADAQSVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLDIELHTVNFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     D   +  + R +D  +DQSYFL+    QQ+    FP+G+++K  V
Sbjct: 125 IATGHYVRRK-----DINGKSQLLRGLDNNKDQSYFLYTLNHQQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ LG H G++
Sbjct: 180 RRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIVTVDGKNLGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+        EP +V+  D  ++ +IV       SL    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKDGNEEPWYVIDKDIQNNILIVAQGHEHPSLMSTGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +  + +   C VK R  Q  +P  V   N+D + V F      V  GQ+ VFY  +
Sbjct: 298 ----KQPLTEEIHCVVKTRYRQQDIPCTVTPINEDKIKVRFANPVAAVTPGQSAVFYQGE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGG+I 
Sbjct: 354 I----CLGGGVIE 362


>gi|57169043|ref|ZP_00368171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli RM2228]
 gi|57019588|gb|EAL56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli RM2228]
          Length = 338

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 201/367 (54%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P FV+ ++   +++IVG +E L+++   L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V  +DD    +  ++S  G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 331 VIASGFI 337


>gi|297588098|ref|ZP_06946742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ATCC 53516]
 gi|297574787|gb|EFH93507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ATCC 53516]
          Length = 375

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 207/366 (56%), Gaps = 24/366 (6%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           + N++D  K    ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C
Sbjct: 6   KENTMDNSK----IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVC 58

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A +D  DA  V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF 
Sbjct: 59  TAEEDYKDAVTVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFK 118

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L    +LGAD +ATGHY  +R+  GDDG +   + R +D  +DQ+YFL   TQ Q+ +
Sbjct: 119 AFLDFAMKLGADYVATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKN 173

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FP+G+++K+ VR++A++  L  ADK DS  ICF+ +  + + +       A +G+IV 
Sbjct: 174 VMFPVGELQKKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVD 231

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
           ++G I+G+HNG++ +TIGQRRGLG+   G   FV   +   + +IV   E    L  +++
Sbjct: 232 VDGNIMGKHNGLMYHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKL 291

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
           Y  +     + L  +     F C  K R  Q  +   V+  DD  V V ++ ++  V  G
Sbjct: 292 YASQFETSLNHLDRNE----FDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDTK-AVTPG 346

Query: 363 QACVFY 368
           QA VFY
Sbjct: 347 QAAVFY 352


>gi|303234693|ref|ZP_07321321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna BVS033A4]
 gi|302494176|gb|EFL53954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna BVS033A4]
          Length = 366

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 203/353 (57%), Gaps = 20/353 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  DA  V 
Sbjct: 6   IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVCTAEEDYKDAVAVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +LGAD 
Sbjct: 63  NEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKLGADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+  GDDG +   + R +D  +DQ+YFL   TQ Q+ ++ FP+G+++K+ V
Sbjct: 123 VATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQKKEV 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+HNG++
Sbjct: 178 REIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKHNGLM 235

Query: 261 NYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLF 316
            +TIGQRRGLG+   G   FV   +  ++ +IV   E    L  +++Y  +     + L 
Sbjct: 236 YHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQFETSLNHLD 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +     F C  K R  Q  +   V+  DD  V V+++ ++  V  GQA VFY
Sbjct: 296 RNE----FDCTAKFRYRQKDIRAHVKFIDDTHVEVNYDDTKA-VTPGQAAVFY 343


>gi|26990719|ref|NP_746144.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida KT2440]
 gi|37999625|sp|Q88FR9|MNMA_PSEPK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24985713|gb|AAN69608.1|AE016594_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida KT2440]
          Length = 374

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 204/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G    ++ + +D  +DQSYFL A   Q++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGALTELL-KGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    VD     +   K+R  Q      ++R   G    F++ +  V  GQ+ VF
Sbjct: 293 LASEIFWVNPVDLGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIEAAE 368


>gi|119944723|ref|YP_942403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas ingrahamii 37]
 gi|166235075|sp|A1STI9|MNMA_PSYIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119863327|gb|ABM02804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas ingrahamii 37]
          Length = 367

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 206/374 (55%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA+ VC
Sbjct: 7   VKVIVGMSGGVDSSVSAYLLQQQGYLVEGLFMKNWEEDDTDQY---CAAAQDLEDAQSVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD
Sbjct: 64  DKLGIPLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R R     DG  +  + R +D  +DQSYFL+A  ++Q+    FP+G+++K  
Sbjct: 124 YIATGHYVRRREV---DGHVQ--LLRGLDNNKDQSYFLYAIGEKQIAKSLFPVGELEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A +  L   +K DS  ICF+ + K+ D ++      A  GDIV   G+++G+H G+
Sbjct: 179 VRRIAEQQDLITHNKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPTGEVIGQHQGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+     +   P +VV  D +++R++V       +L  + +  ++ +W+
Sbjct: 237 MYHTLGQRKGLGIGGLQNSNENPWYVVGKDMDNNRLLVAQGADHPALFSYGLIAKQCDWV 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
                       F+C VK R  Q  +P  V   +DD + V F+ ++  V  GQ+ VFY  
Sbjct: 297 D----RTPKKSTFRCTVKTRYRQQDIPCTVTPLDDDTLKVIFDTAQAAVTPGQSAVFY-- 350

Query: 371 DSNEARVLGGGIIS 384
             N+   LGG II 
Sbjct: 351 --NDEVCLGGAIIE 362


>gi|317178374|dbj|BAJ56162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F30]
          Length = 342

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  + ++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNTQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDYALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKSG-----EYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|257792258|ref|YP_003182864.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Eggerthella lenta DSM 2243]
 gi|257476155|gb|ACV56475.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Eggerthella lenta DSM 2243]
          Length = 352

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 196/364 (53%), Gaps = 25/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ + MSGGVDS+V AALL R GY+V+GVT +  ++    +            DA  VC 
Sbjct: 6   RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAA---------ADAAAVCS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H        F   V+ PF SSYAAG TP PCV CN   K   L+ V  +LG D +
Sbjct: 57  QLGIRHEAPGCVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVAGELGCDRI 116

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R +RL   D G  R ++ R +D  +DQSY L   +Q+QL  L  PLG M K  V
Sbjct: 117 ATGHYARIARL--SDSG--RFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL +A+K++SQD CF+ +G Y   ++      A  GDIV   G +LG H G+ 
Sbjct: 173 RVIAADLGLVVAEKAESQDNCFI-EGDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLA 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT+GQR+G+GVA  EP +VV     +  ++VG  +   +  + +  +NW     FE ++
Sbjct: 231 NYTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNWQA---FE-SL 286

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            + +   VK+R    P    ++  DD  V +     +   A GQ  V Y  D+    VLG
Sbjct: 287 GESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLG 342

Query: 380 GGII 383
           GG+I
Sbjct: 343 GGMI 346


>gi|148547054|ref|YP_001267156.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida F1]
 gi|166235073|sp|A5W1G2|MNMA_PSEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148511112|gb|ABQ77972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida F1]
          Length = 374

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 204/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G    ++ + +D  +DQSYFL A   Q++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGALTELL-KGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    VD     +   K+R  Q      ++R   G    F++ +  V  GQ+ VF
Sbjct: 293 LASDIFWVNPVDLGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIEAAE 368


>gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
 gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
          Length = 364

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 195/370 (52%), Gaps = 24/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +  +  +   G C A +D  D   V +
Sbjct: 6   KVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIAVAE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L    ++GAD +
Sbjct: 63  QLGIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKIGADYV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  ++   DG+ +  M R +D  +DQ+YFL    Q+QL  + FPLG+  K  +R
Sbjct: 123 ATGHYARI-IHEEKDGEMKSTMLRGIDDNKDQTYFLCQLNQEQLEKVLFPLGEYTKPKIR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A +  L  A K DS  ICF+ +  +   + +     A  G+IV+  G++LG HNG++ 
Sbjct: 182 EIAEKYNLATAKKKDSTGICFIGERDFNKFLSQYLP--AKGGNIVNTQGKVLGHHNGLMY 239

Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           YTIGQR+G+G+       GEP FVV   L+KN   V  G    L    +   + N++ + 
Sbjct: 240 YTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLIATDFNFINEV 299

Query: 315 LFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            F        +C VK R  Q D   V  + N++   V F + +  V  GQ  V Y  +  
Sbjct: 300 QFP------LECTVKFRYRQKDTKAVISKLNENEYEVIFNEPQKAVTLGQIVVAYDGEV- 352

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 353 ---CLGGGII 359


>gi|149194412|ref|ZP_01871509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caminibacter mediatlanticus TB-2]
 gi|149135587|gb|EDM24066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caminibacter mediatlanticus TB-2]
          Length = 339

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 36/371 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV+V +SGGVDS+V   LLK+ GY+VIG+ L++++    S         +++    ++ 
Sbjct: 1   MRVLVGVSGGVDSAVTTYLLKKAGYEVIGIYLKMHSGVNHS---------ENLKKIEKLS 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I  S+ V D EE FR  V   F  SY  G TP PC  CN+ +KF   ++   +   + 
Sbjct: 52  KKIGFSYVVEDVEEEFRKEVYEYFIKSYEEGSTPNPCAMCNKQIKFGIFMNFLEKYNCEK 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY+R      +DGK    +    D  +DQSYFLF   ++ L  L FPLG+  K  +
Sbjct: 112 AATGHYVR------NDGK---FLYEAKDKNKDQSYFLFGIKKEVLPKLIFPLGEYTKNEI 162

Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           + +A+E+GL + A + +SQDICF++   Y DV+K  +     +G +V+  GQ +G H G 
Sbjct: 163 KLIAKEIGLEEFATQKESQDICFIENS-YIDVLK-FHFNPEKKGKVVNKKGQKIGIHKGY 220

Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDGLFE 317
             YTIGQR+G  +    +P +V+ +D  ++ +IVG ++ LE   ++L+ +N ++ D +FE
Sbjct: 221 AFYTIGQRKGFSLFKSSKPHYVIGIDAKTNTIIVGDKKDLEKKLVFLKGVNLFIDDKIFE 280

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C  K+R     +   V+  +     V F+++  GVA GQACVFY  +    +
Sbjct: 281 --------CEAKVRYRAPKLKAVVKMESKTKAVVKFKEAATGVAKGQACVFYEGE----K 328

Query: 377 VLGGGIISGSK 387
           +LGGG I G+K
Sbjct: 329 LLGGGWIRGAK 339


>gi|298487541|ref|ZP_07005583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157925|gb|EFH99003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 376

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 198/376 (52%), Gaps = 26/376 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 8   NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     L
Sbjct: 65  QAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 125 GADLIATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH
Sbjct: 180 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI
Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLIKDLDNNELIVGQGNDHPWLFSRALVSTEI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+        +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY
Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFY 353

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGG+I 
Sbjct: 354 DGEI----CLGGGVIE 365


>gi|153951834|ref|YP_001397317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|166234847|sp|A7H1D7|MNMA_CAMJD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152939280|gb|ABS44021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 338

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGTHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+   D    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYNHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|113953824|ref|YP_729973.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9311]
 gi|123327918|sp|Q0IC49|MNMA_SYNS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113881175|gb|ABI46133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9311]
          Length = 391

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 208/399 (52%), Gaps = 34/399 (8%)

Query: 1   MVVSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           M  S AT+  +  L++    P + RV V +SGGVDSS+ AAL+   G++V G+TL L + 
Sbjct: 7   MTTSTATQAGAEALERLRQWPGEHRVAVGLSGGVDSSLTAALMVEAGWEVEGLTLWLMSG 66

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                 KG+CCA + + DA  +C  + V H+V D  + F   ++      Y AG TPLPC
Sbjct: 67  ------KGACCA-EGLVDAAGICQQLGVPHHVVDSRDTFVREIVQGLVDGYRAGITPLPC 119

Query: 118 VDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
             CNR+VKF  +L+   Q      +ATGHY R RL   D    R  + R +D  +DQSYF
Sbjct: 120 SKCNRSVKFGPMLAWAEQERNLPRIATGHYARIRL---DREDGRWKLLRGLDRRKDQSYF 176

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           L+   Q+ L  + FPLG++ K   R  A   GL  ADK +SQD+C      +  +   ++
Sbjct: 177 LYDLPQEVLARVVFPLGELTKADTRLEAGRHGLRTADKPESQDLCLADH--HGSMRAFLD 234

Query: 237 AGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295
           A I   +G+IV  +G ++G+H+GI ++TIGQR+GLG+A  EPL VV LD   ++V+V  R
Sbjct: 235 AYIPPRDGEIVLQDGTVVGQHDGIEHFTIGQRKGLGIAWSEPLHVVKLDAAMNQVVVATR 294

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDG--- 347
                    +  +NW+   +    +    +  V++R   +PV   +       ND     
Sbjct: 295 AEAGRTGCEVGAMNWV--SIAPPPLDSPMEVEVQVRYRSEPVRAHLICIEATANDRAKER 352

Query: 348 ---VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                + F++ +  +  GQ  V Y  +     VLGGG+I
Sbjct: 353 PHRCKLTFQEPQFSITPGQGAVLYDGEV----VLGGGLI 387


>gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549]
          Length = 359

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R+R  V +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 NYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|261838653|gb|ACX98419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 51]
          Length = 342

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++ V   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312320|ref|ZP_06803107.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122501358|sp|Q2A5X5|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234852|sp|A7N9A5|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205821924|sp|Q0BP64|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 359

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQTRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166234854|sp|A4J081|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 359

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQTRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|237809068|ref|YP_002893508.1| tRNA-specific 2-thiouridylase MnmA [Tolumonas auensis DSM 9187]
 gi|259495840|sp|C4L952|MNMA_TOLAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|237501329|gb|ACQ93922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tolumonas auensis DSM 9187]
          Length = 369

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 205/379 (54%), Gaps = 32/379 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +    + +    C A  D+ DA
Sbjct: 3   NNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSDEY---CSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIKLHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R      DD      + R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LGADYIATGHYVRR-----DDSTGHPRLLRGLDNNKDQSYFLYTLSSEQIAQSLFPVGDL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I  ++G+++G 
Sbjct: 175 EKPQVRAIAEQLGLATAKKKDSTGICFIGERKFTEFLGRYLP--AQPGVIETVDGKVIGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----L 305
           H G++ +T+GQR+GLG+         P +VV  DK+ +R ++   +  +  R++      
Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKDGDENPWYVV--DKDVARNVLIVAQGHDHPRLFSDGLIA 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           ++++W+   +  +     F C VK R  Q  +P  V+  +DD + V F   +  V  GQ+
Sbjct: 291 KQLDWVDRQVRREP----FDCVVKTRYRQQDIPCHVEPLDDDTIKVTFASPQAAVTPGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY  +      LGGGII
Sbjct: 347 AVFYLGE----ECLGGGII 361


>gi|325963946|ref|YP_004241852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470033|gb|ADX73718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 369

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/374 (36%), Positives = 189/374 (50%), Gaps = 29/374 (7%)

Query: 31  VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88
           +DS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R CD + + +Y
Sbjct: 1   MDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLGIPYY 59

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148
           V+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG D + TGHY +
Sbjct: 60  VWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTGHYAK 119

Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREM 207
               V +D    R + R  D  +DQSY L   T +QL    FPL D   K  VR  A   
Sbjct: 120 ----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAEAERR 175

Query: 208 GLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQ 266
           GL +A+K DS DICF+  G   D    +   I +  GDIV   G  +G H G   +T+GQ
Sbjct: 176 GLSVANKPDSHDICFIPDG---DTAGWLAEKIEMTTGDIVDETGTKVGEHPGANAFTVGQ 232

Query: 267 RRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           RRGL +    A G+P FV+ +    ++V+VGP   L +  I   +++W G  + E     
Sbjct: 233 RRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGLPIAEVGTGA 292

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV---------GVASGQACVFYTSDSN 373
            F C  ++R+  DPVP   +    G   D   S++         GVA GQ  V Y     
Sbjct: 293 EFDCHAQVRAHGDPVPATARMEPAGAGEDPAGSQLVVRLTTPLRGVAPGQTVVLYQG--- 349

Query: 374 EARVLGGGIISGSK 387
            +RVLG   I  ++
Sbjct: 350 -SRVLGQATIDAAR 362


>gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457896|ref|ZP_03666369.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371318|ref|ZP_04987320.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|71658014|sp|Q5NEF9|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816649|sp|B2SEJ7|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822328|sp|Q14FW2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 359

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQTRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|108563707|ref|YP_628023.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori HPAG1]
 gi|107837480|gb|ABF85349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPAG1]
          Length = 353

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 12  MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 62  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 122 EKIATGHYARVK-----EIDKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 176

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 177 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 233

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 234 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 294 --FKDG-----EYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI- 345

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 346 ---LLGGGVI 352


>gi|257485430|ref|ZP_05639471.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330987933|gb|EGH86036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 366

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 378

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 21  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 78  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 138 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 312 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 368 DDV----CLGGGVI 377


>gi|269838417|ref|YP_003320645.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787680|gb|ACZ39823.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sphaerobacter thermophilus DSM 20745]
          Length = 353

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 192/370 (51%), Gaps = 24/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VA+SGGVDS+V A  L+  G++ IG+ L+L++S   S  +G CC  Q  +DAR V +
Sbjct: 3   RILVALSGGVDSAVAALTLQSLGWEPIGIHLRLFDSDPESIAEGVCCGDQAAFDARLVAN 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  YV D  E F   V      SYA  ETP PC+ CN  V+   LL +   LG   +
Sbjct: 63  WLGIPFYVRDLREEFSREVAGMTVESYARAETPNPCIACNHRVRIPALLRLADSLGIPAV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R ++ VGD    R  +    D  RDQSY L+  T + L  L FPLG++ KE+VR
Sbjct: 123 ATGHYVR-KVRVGD----RWYLAESRDGRRDQSYALYRLTSEDLERLEFPLGELDKETVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
             AR  GL +ADK+ S D+CF +  G   ++V          G ++  +G+++GRH GI 
Sbjct: 178 QRARAAGLPVADKAASVDLCFAKTAGGVGNLVAAARPETGKPGPLLDEHGRVVGRHPGIA 237

Query: 261 NYTIGQRRGLGV--AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             TIGQR GL     + E  +V  +D  +  V V PR  L    + LR+  W G+     
Sbjct: 238 YVTIGQRSGLQWDKTVPERRYVASIDPATRTVAVAPRARLLTRSVTLRDPIWHGE----- 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                 +   +IR      P F +   DG  V+F      +A GQA V Y    +  RVL
Sbjct: 293 ---PPKRAQARIRYQG---PRF-EVTCDGERVEFLDPGPPLAPGQAVVLY----DGPRVL 341

Query: 379 GGGIISGSKR 388
           GGG  +  +R
Sbjct: 342 GGGTAASVER 351


>gi|167010288|ref|ZP_02275219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica FSC200]
          Length = 378

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 21  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 78  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 138 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 312 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 368 DDV----CLGGGVI 377


>gi|205822484|sp|Q1CRS3|MNMA_HELPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|308183444|ref|YP_003927571.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4]
 gi|308065629|gb|ADO07521.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4]
          Length = 342

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P   FV   D  + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 379

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 195/382 (51%), Gaps = 26/382 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V
Sbjct: 11  NTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKV 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGAD
Sbjct: 68  ADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGAD 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +RL   +DG     + R +D  +DQ+YFL     + L  + FPLG+M K  
Sbjct: 128 YIATGHY--ARLQHDEDGTMH--LLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKPD 183

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA   GL  A K DS  ICF+ +  + + +       A  G ++  +GQ+ G H G+
Sbjct: 184 VRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAGL 241

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQRRGLG+       EP FVV  D   + + VG       L    +   +++++ 
Sbjct: 242 MYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFVT 301

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
           D   ED   D F    K R  Q    V V  NDD   V V F+     +  GQA VFY  
Sbjct: 302 D---EDLGND-FHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFY-- 355

Query: 371 DSNEARVLGGGIISGSKRSDAV 392
             N    LG G+I  +   + V
Sbjct: 356 --NGEECLGSGMIDAAYNDERV 375


>gi|325970705|ref|YP_004246896.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy]
 gi|324025943|gb|ADY12702.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy]
          Length = 356

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 194/372 (52%), Gaps = 29/372 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---KGSCCA---GQDVY 74
           M+V+V MSGG+DSSV A LLK+ G++V+GVT+ ++N R    R     SC A    +D+ 
Sbjct: 1   MKVLVGMSGGIDSSVAAYLLKQQGHEVMGVTMTIWNKRSHLTRPLNSTSCFAPDKTEDII 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             +++C+ I + H V +  + F   V+  F + Y  G TP PCV CN  +KF  ++   +
Sbjct: 61  AIKKICEKIGIEHQVLELSDLFEEIVLANFKTEYMDGRTPNPCVWCNSKIKFGAMVEYAK 120

Query: 135 QLGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + G D    ATGHY R    V ++G  R  + + +DL++DQSYFL+   QQQL    FPL
Sbjct: 121 ESGLDFDRFATGHYAR---IVEENG--RYAVAKAVDLKKDQSYFLYRLNQQQLARTLFPL 175

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G M KE VR +    G     + +SQD          D+  R        G+IV+  G++
Sbjct: 176 GAMTKEEVRRIDVAQGFHKVYQEESQDFYDGDYTDLLDITSR-------PGNIVNRQGRV 228

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRH GI +YTIGQR+GLG+A   PL+V+ L  +++ V+VG  E      +   ++ W  
Sbjct: 229 LGRHEGIWHYTIGQRKGLGIAAERPLYVLALRSDTNEVVVGFVEDTLQSTVTAGDVVWSS 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSD 371
               +  V+       KIRS+         +N DG        EV  A+ GQ+ V Y   
Sbjct: 289 VQTLQQEVM----VQAKIRSTGFATEAKAHQNPDGSITAIFSDEVKAATVGQSLVLY--- 341

Query: 372 SNEARVLGGGII 383
            +   +L GGII
Sbjct: 342 -DGPVILCGGII 352


>gi|28378785|ref|NP_785677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum WCFS1]
 gi|254556990|ref|YP_003063407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum JDM1]
 gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258513|sp|Q88V96|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28271622|emb|CAD64528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum WCFS1]
 gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum JDM1]
 gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 374

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 195/382 (51%), Gaps = 26/382 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V
Sbjct: 6   NTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +RL   +DG     + R +D  +DQ+YFL     + L  + FPLG+M K  
Sbjct: 123 YIATGHY--ARLQHDEDGTMH--LLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKPD 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA   GL  A K DS  ICF+ +  + + +       A  G ++  +GQ+ G H G+
Sbjct: 179 VRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAGL 236

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQRRGLG+       EP FVV  D   + + VG       L    +   +++++ 
Sbjct: 237 MYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFVT 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
           D   ED   D F    K R  Q    V V  NDD   V V F+     +  GQA VFY  
Sbjct: 297 D---EDLGND-FHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFY-- 350

Query: 371 DSNEARVLGGGIISGSKRSDAV 392
             N    LG G+I  +   + V
Sbjct: 351 --NGEECLGSGMIDAAYNDERV 370


>gi|302035751|ref|YP_003796073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrospira defluvii]
 gi|300603815|emb|CBK40147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrospira defluvii]
          Length = 360

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 199/372 (53%), Gaps = 25/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------KASKRKGSCCAGQDVYD 75
           V++ MSGGVDSSV A+LL + GYDV G+TLQ++          K  + +G C  G   Y 
Sbjct: 6   VLLGMSGGVDSSVAASLLVQQGYDVHGITLQVWEHEDDQIAVSKRWEERGCCKIGIAKYV 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+R    + + + V D  E F+  VI  F + YA+G TP PCV CN  VK   L ++ ++
Sbjct: 66  AQR----LRIPYEVVDRREVFQQGVIDDFVAGYASGTTPNPCVRCNERVKLRSLYALAQE 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G D +ATGHY R +   G     +  + R +D  +DQSYFL+      L  L FP+G M
Sbjct: 122 RGMDHVATGHYARVQQVNG-----QWSLHRALDARKDQSYFLYRINPAWLPRLLFPVGHM 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  V   A  +GL + +  +SQ+ICFV  G Y   +++        G  V ++G++LG+
Sbjct: 177 QKCDVWQEAESLGLPVEELKESQEICFVSHGDYRTFIEQEMPEAKKPGSFVGVDGEVLGQ 236

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI  YT GQRRGLG+A+G+ L+V  +   S +V++   + L      + +++     L
Sbjct: 237 HAGIAFYTPGQRRGLGIAVGQRLYVQKVVPESGQVVLCAEDQLVQSECQVADLSLFDHAL 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
               VV      VK+R +  P    +  ++ G + V F + +  ++ GQ+ VFY  D   
Sbjct: 297 GRQPVVAD----VKVRYATPPCQATLLPSEIGTLQVRFHQPQRALSPGQSAVFYDGD--- 349

Query: 375 ARVLGGGIISGS 386
            RVLGGGII  S
Sbjct: 350 -RVLGGGIIQRS 360


>gi|317495071|ref|ZP_07953443.1| tRNA methyl transferase [Gemella moribillum M424]
 gi|316914843|gb|EFV36317.1| tRNA methyl transferase [Gemella moribillum M424]
          Length = 370

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 191/370 (51%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK+ GYDVIGV ++ +  +     +G C A +D  D  +VC+
Sbjct: 6   KVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGGCVAEKDYEDVIKVCE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y  ++E+ + N V   F   Y  G TP P + CN+ +KF   L     LGAD +
Sbjct: 63  QLDIPYYSINFEKEYWNKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGADYV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +     D   +R++ R +D  +DQ+YFL    Q Q+ ++ FP+G+++K+ VR
Sbjct: 123 ATGHYARVK-----DEDNQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKDVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A K DS  ICF+ +  + + + +     A  G +V L+G I G H G+++
Sbjct: 178 RIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AKSGKMVDLDGNIRGEHVGLMH 235

Query: 262 YTIGQRRGLGVAM-----GEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           YTIGQR GLG+       GE  F     L+KN   V  G           L         
Sbjct: 236 YTIGQRHGLGIGGTKDTDGEAWFACGKDLEKNILYVCQGFHNEKLYSDSLLASSLSF--- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +D   + F C  K R  Q    V V+   DD V V ++     V  GQA VFY  D  
Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVDVEILEDDKVKVVYKNPVRAVTPGQAVVFYDGDV- 351

Query: 374 EARVLGGGII 383
               LGG II
Sbjct: 352 ---CLGGAII 358


>gi|104781327|ref|YP_607825.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas entomophila L48]
 gi|122403646|sp|Q1IBE4|MNMA_PSEE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|95110314|emb|CAK15021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas entomophila L48]
          Length = 374

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 207/380 (54%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G+   ++ + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGELTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    +D     +   K+R  Q      ++R ++G    F++ +  V  GQ+ VF
Sbjct: 293 LASEIFWVNPIDLSSPRRLTAKVRYRQGDQQCTLERTENGYRAMFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIETAE 368


>gi|27366203|ref|NP_761731.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus CMCP6]
 gi|30173408|sp|Q8CWJ6|MNMA_VIBVU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27362403|gb|AAO11258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus CMCP6]
          Length = 374

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +     S+    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSEY---CTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G++LG+H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
            +T+GQR+GL +          EP FV   D   + +I         L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      D V    KC VK R  Q  +P   +  +D+ + V F++ E+ V  GQ+ VFY 
Sbjct: 300 VEREPIRDVV----KCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQSAVFYQ 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 GDV----CLGGGIIE 366


>gi|259506284|ref|ZP_05749186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
 gi|259166064|gb|EEW50618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
          Length = 359

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 194/371 (52%), Gaps = 23/371 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V A+     G++V+GV L L    ++ +     CC+ +D  DARRVCD + +
Sbjct: 1   MSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRVCDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D + TGH
Sbjct: 61  PFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFDAVVTGH 120

Query: 146 YIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           Y R ++   G DG  R    R +D+ +DQSY L      ++    FP+GD  K  +R+ A
Sbjct: 121 YARLTQPADGGDGYLR----RGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKPEIREEA 176

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYT 263
              G  +A K DS DICF+  G   +    +   I L  G IV   G  L  H G+  +T
Sbjct: 177 AASGFSVAKKPDSYDICFIPDG---NTQAFLGKHIGLRPGMIVDREGTTLREHAGVHEFT 233

Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR+GL +    A G P +V  +D  +  V VG RE LEV  I+   + +L        
Sbjct: 234 IGQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFL------HP 287

Query: 320 VVDG-FKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +DG   C V++R+    V     + R  D + +D  +S  GVA GQA V Y  D     
Sbjct: 288 AMDGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLPDPEGDI 347

Query: 377 VLGGGIISGSK 387
           VLG G I G++
Sbjct: 348 VLGSGTICGTE 358


>gi|319957080|ref|YP_004168343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419484|gb|ADV46594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
          Length = 340

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 204/367 (55%), Gaps = 33/367 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDS+V A LL+++GY+V+GV ++L+++    +        ++   ARRV
Sbjct: 3   EKKVLVGMSGGVDSTVAALLLQKEGYEVVGVYMKLHDNEAYHR--------ENYAKARRV 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + V  +  D    FR  V   F   Y  G TP PCV CNR +KF  +L     LG +
Sbjct: 55  GEYLGVEVHFLDISGDFRQEVYDYFVEEYRTGRTPNPCVVCNRQIKFGRMLEFADSLGIE 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+RS      DG   R +    D  +DQSYFL    ++ +  L FPLG+  KE 
Sbjct: 115 KVATGHYVRS------DG---RYIYMARDRSKDQSYFLAQVRKEVIPRLLFPLGEWLKEE 165

Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           V+  A E+ +  D+A + +S +ICFV+   Y +V++R +  I  EG++++  G+++G H 
Sbjct: 166 VKAYAAEIPVLQDLATQKESSEICFVEN-DYTEVLQR-HMEIDREGEVLNEAGEVVGTHK 223

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+RRG  V    +P +V+ +D   +R++VG RE LE     +  IN     LF
Sbjct: 224 GYMHYTIGKRRGFTVRGAHDPHYVLSVDPERNRIVVGTREKLEERSFEISRIN-----LF 278

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ED  +  F C VK+R     +P  V  + +   V+  +   G+A GQ  VFY  +    R
Sbjct: 279 ED--LTEFDCQVKVRYRTRAIPAHVVIDGERGRVELGEPVYGLARGQFAVFYDGE----R 332

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 333 LLGGGEI 339


>gi|258646059|ref|ZP_05733528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister invisus DSM 15470]
 gi|260403430|gb|EEW96977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister invisus DSM 15470]
          Length = 350

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 194/366 (53%), Gaps = 29/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVVAMSGGVDS++ A LL+  GYDV G T+  ++             GQD+ +A+++ D
Sbjct: 6   KVVVAMSGGVDSTLTARLLQEAGYDVYGATMNQFD-------------GQDMTEAQKIAD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140
            + + H V D  + +++ V+  F  SY  G TP PC+ C+  +KF       R       
Sbjct: 53  FLGIPHKVIDVRKMYQDIVLSYFVDSYKNGITPNPCMMCDFKIKFGFFYDTVRAFFDCPY 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMC-RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ATGHY R    +  DG RR+    +  DL +DQSY ++  TQ QL  + FPLG + K+ 
Sbjct: 113 FATGHYAR----ITYDGTRRKYQVEKATDLAKDQSYMMYHLTQDQLAHILFPLGRIYKKD 168

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258
            R ++ E GL   +K++SQDICF+   K +    + +A  A   G+I    G+ILG H G
Sbjct: 169 TRRISEEKGLPTYNKAESQDICFLTSEKSYAEFLQNHAPEAFRPGNITDTKGRILGTHKG 228

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YTIGQR+GLG+A   PL+VV L    +RVIVG  + L    +   E+++  DG    
Sbjct: 229 LPFYTIGQRKGLGIASRTPLYVVSLHAGKNRVIVGSNDDLFRSGLLANELDFT-DGA--- 284

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F+C  KIR         V  ++ G   V F++ +  +  GQ+ VFY     E R+
Sbjct: 285 PPSQQFRCRAKIRYGIHVHNCTVTLDNHGRAAVKFDEPQRAITPGQSVVFY----EENRL 340

Query: 378 LGGGII 383
           LGGG I
Sbjct: 341 LGGGTI 346


>gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica 257]
 gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica 257]
          Length = 381

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 24  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 81  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 141 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 315 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 371 DDV----CLGGGVI 380


>gi|226944910|ref|YP_002799983.1| tRNA-specific 2-thiouridylase MnmA [Azotobacter vinelandii DJ]
 gi|226719837|gb|ACO79008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Azotobacter vinelandii DJ]
          Length = 372

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 203/385 (52%), Gaps = 29/385 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +P   RV+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 3   DPAHTRVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 60  QAVCDRIGMRLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D + R  + + +D  +DQSYFL A   +QL    FP+G+++
Sbjct: 120 GADMIATGHYVRRR-----DAEDRTELLKGLDPNKDQSYFLHAVASEQLAKSLFPVGELE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K +VR +A   GL  A K DS  ICF+ + ++ D +K+     A  G I    G+++G+H
Sbjct: 175 KPAVRAIAELHGLATARKKDSTGICFIGERRFGDFLKQYLP--ARPGPIETTEGKVIGQH 232

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+     A  +P +V+  D   + +IVG       L    ++  E+
Sbjct: 233 HGLMYHTIGQRQGLGIGGMKNATEDPWYVLAKDLTRNVLIVGQGNQHPWLFSRALHTSEM 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+    F        +   K+R  Q      +++ D G  V F++ +  V  GQ+ V Y
Sbjct: 293 FWVNPPDFPLPR----RLAAKVRYRQGDQTCTLEKTDQGFRVLFDEPQRAVTPGQSVVLY 348

Query: 369 TSDSNEARVLGGGIISGS---KRSD 390
             D      LGGG+I  +   KR D
Sbjct: 349 DGDV----CLGGGVIETAEPWKRED 369


>gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella cf. novicida Fx1]
          Length = 359

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+R  V +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N D  V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDASVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|289625417|ref|ZP_06458371.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649300|ref|ZP_06480643.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866846|gb|EGH01555.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 366

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|330965599|gb|EGH65859.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 366

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCTLEKTTDGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
          Length = 381

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 24  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 81  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 141 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 315 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 371 DDV----CLGGGVI 380


>gi|37679527|ref|NP_934136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus YJ016]
 gi|61217310|sp|Q7MLT4|MNMA_VIBVY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|37198271|dbj|BAC94107.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Vibrio vulnificus YJ016]
          Length = 374

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 201/375 (53%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +     S+    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSEY---CTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHKINFAAEYWDNVFEYFLSEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G++LG+H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
            +T+GQR+GL +          EP FV   D   + +I         L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q  +P   +  +D+ + V F++ E+ V  GQ+ VFY 
Sbjct: 300 VE----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQSAVFYQ 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 GDV----CLGGGIIE 366


>gi|208435231|ref|YP_002266897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori G27]
 gi|229486341|sp|B5Z8Y2|MNMA_HELPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|208433160|gb|ACI28031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori G27]
          Length = 342

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++GV L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGVYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++ V   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P   FV   D+ + V F++S  GVA GQA V Y  D  
Sbjct: 283 --FKSG-----EYFIKARYRSVPTKAFVSLKDEMIEVGFKESFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|283955497|ref|ZP_06372992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792958|gb|EFC31732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 338

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+   D    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKNPVYGLASGQMAVFYDYD----K 330

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 331 VIASGFI 337


>gi|330875781|gb|EGH09930.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 366

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|329936861|ref|ZP_08286540.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptomyces griseoaurantiacus M045]
 gi|329303786|gb|EGG47670.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptomyces griseoaurantiacus M045]
          Length = 376

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 144/390 (36%), Positives = 204/390 (52%), Gaps = 28/390 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           D  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 4   DTPQTRRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 62

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 63  EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 122

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  +++ + +DG R   + R  D+ +DQSY L    ++QL    F
Sbjct: 123 DKALALGFDAVCTGHY--AQVILREDGTRE--LHRASDMAKDQSYVLGVLDERQLAHAMF 178

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247
           PLGD    KE +R  A   GL +A K DS DICF+  G     + KR+      EGDIV 
Sbjct: 179 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSKRLGRA---EGDIVD 235

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +G  +G H G   +TIGQR+GL +    A G+P +V+ +   ++ V VGP  +L+V  +
Sbjct: 236 ESGTKVGTHEGAFGFTIGQRKGLRIGTPAADGKPRYVLDISPVTNTVTVGPAAALDVDAL 295

Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
              +  W G          G   +  ++R+  +   V  +  D  + V F     GVA G
Sbjct: 296 TAVKPRWCG------TAPSGPGTYTAQLRAHGEETEVSAELVDGALEVTFTTPVRGVAPG 349

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           QA V Y       RV+G   I+ ++R+ A 
Sbjct: 350 QAVVLYQG----TRVVGSATIASTRRAVAA 375


>gi|210135491|ref|YP_002301930.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori P12]
 gi|210133459|gb|ACJ08450.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Helicobacter pylori P12]
          Length = 362

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 209/384 (54%), Gaps = 37/384 (9%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 8   ARLRAITFNERIK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 60

Query: 67  CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                D+Y  +A++ C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +
Sbjct: 61  ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLM 116

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF   L    +LG + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + 
Sbjct: 117 KFGLALDHALKLGCEKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEV 171

Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +  L FPLGD+ K+ ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  + 
Sbjct: 172 IAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 228

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299
            EG + +L G+I+G H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L 
Sbjct: 229 KEGVVKNLQGEIIGTHKGYMQYTIGKRKGFNVKGALEPHFVVGIDAKKNELIVGKKEDLA 288

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
            H +  +  + + D  F+       + F+K R    P   FV   D+ + V FE+   GV
Sbjct: 289 THSLKAKNKSLMKD--FKSG-----EYFIKARYRSVPAKAFVSLRDEVIEVGFEEPFYGV 341

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A GQA V Y  D     +LGGG+I
Sbjct: 342 AKGQALVVYKDDI----LLGGGVI 361


>gi|206889455|ref|YP_002249424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206889622|ref|YP_002249374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741393|gb|ACI20450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741560|gb|ACI20617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 342

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 196/365 (53%), Gaps = 33/365 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++AMSGG+DSSV A LL+  G  V GV   L++               ++  A++  +
Sbjct: 3   KVLLAMSGGIDSSVAAYLLREKGMAVEGVFFILFDE------------PANIELAKQTAN 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+  ++ D  E+F+  VI PF   Y  G TP PCV CN+ +KF  L  +  ++ A+ +
Sbjct: 51  FLNIKLHIEDLREKFKADVITPFFEGYKKGITPNPCVICNKKIKFPLLKFLAEKVKANYI 110

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R  R+          ++ + +D ++DQSYFL+   +  L  + FPLG+  K  +
Sbjct: 111 ATGHYARIVRI------NNIPLLMKGIDPKKDQSYFLYGIERTLLSHIIFPLGEYTKYKI 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++G+      +S ++CF++  +Y++ ++    G  +E       G+I+G+H GI 
Sbjct: 165 REIAEKVGIPSKVAEESTEVCFLRDKRYYESIRPTKGGPIIEMS----TGKIIGQHRGIH 220

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+ LG+A   PL+VV ++ + + V V  +E   +    + E+NWL D   E+  
Sbjct: 221 LYTIGQRKRLGIASPHPLYVVKIEPSENAVYVDSKEKAFMREFVVNELNWLCDIEKEE-- 278

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F C VKIR + +P    V   N D   V FEK +     GQ+ VFY  D     VLG
Sbjct: 279 ---FSCQVKIRYAMNPEKATVTLINKDRANVVFEKPQFAPTPGQSAVFYNGDI----VLG 331

Query: 380 GGIIS 384
           GG+I 
Sbjct: 332 GGVIK 336


>gi|302381006|ref|ZP_07269467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311227|gb|EFK93247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 366

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 201/353 (56%), Gaps = 20/353 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  DA  V 
Sbjct: 6   IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVCTAEEDYKDAVAVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +LGAD 
Sbjct: 63  NEICIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKLGADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R+  GDDG +   + R +D  +DQ+YFL   TQ Q+ ++ FP+G+++K+ V
Sbjct: 123 VATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQKKEV 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+HNG++
Sbjct: 178 REIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKHNGLM 235

Query: 261 NYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLF 316
            +TIGQRRGLG+   G   FV   +   + +IV   E    L  +++Y  +     + L 
Sbjct: 236 YHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKLYASQFETSLNHLD 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +     F C  K R  Q  +   V+  DD  V V ++ ++  V  GQA VFY
Sbjct: 296 RNE----FDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDTK-AVTPGQAAVFY 343


>gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
 gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
          Length = 359

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIRFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R+R  V +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 NYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+  E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|71735842|ref|YP_275272.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123635957|sp|Q48H61|MNMA_PSE14 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71556395|gb|AAZ35606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 376

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 198/376 (52%), Gaps = 26/376 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 8   NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     L
Sbjct: 65  QAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH
Sbjct: 180 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI
Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+        +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY
Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFY 353

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGG+I 
Sbjct: 354 DGEI----CLGGGVIE 365


>gi|121613044|ref|YP_999778.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004752|ref|ZP_02270510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|166234848|sp|A1VXD7|MNMA_CAMJJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|87249047|gb|EAQ72009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 338

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+   D    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 331 VIASGFI 337


>gi|330889667|gb|EGH22328.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 366

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|217033651|ref|ZP_03439079.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10]
 gi|216943997|gb|EEC23431.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10]
          Length = 342

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P    V   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAHVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|120554680|ref|YP_959031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter aquaeolei VT8]
 gi|205816919|sp|A1U1H5|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter aquaeolei VT8]
          Length = 392

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 199/383 (51%), Gaps = 23/383 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++P   RV+V MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+ D
Sbjct: 8   QSPAHTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLAD 64

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +   +   + + V   F S Y+AG TP P + CN+ VKF   L     
Sbjct: 65  AQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAVT 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R R    +DG  +  + + +D  +DQSYFL A + +++    FP+G++
Sbjct: 125 LGADYIATGHYTRQRPL--NDGSGKAQLLKGLDPNKDQSYFLHAVSGERIARTLFPVGEL 182

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E G    DK DS  ICF+ + K+ D +K+     A  G+I   +G ++G+
Sbjct: 183 EKPEVRRIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGNIETPDGTVIGK 240

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHR-IYLRE 307
           H G++ +TIGQR+GLG+        EP +V    L +N    + G    L   R +    
Sbjct: 241 HQGLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSGP 300

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           ++W+      +     F+C  K R  Q      V   D GV V F+ ++  V  GQ+ VF
Sbjct: 301 VDWVAG----EPPAQKFRCKAKTRYRQPDQDCEVTVIDGGVKVVFDDAQRAVTPGQSVVF 356

Query: 368 YTSDSNEARVLGGGIISGSKRSD 390
           Y  +      LGGG+I  + R +
Sbjct: 357 YQGEV----CLGGGVIEQTWRDN 375


>gi|320156716|ref|YP_004189095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus MO6-24/O]
 gi|319932028|gb|ADV86892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus MO6-24/O]
          Length = 374

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 201/375 (53%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +     S+    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNSE---YCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G++LG+H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
            +T+GQR+GL +          EP FV   D   + +I         L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q  +P   +  +D+ + V F++ E+ V  GQ+ VFY 
Sbjct: 300 VE----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQSAVFYQ 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 GDV----CLGGGIIE 366


>gi|229591246|ref|YP_002873365.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens SBW25]
 gi|259495834|sp|C3JY68|MNMA_PSEFS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229363112|emb|CAY50124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens SBW25]
          Length = 374

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 200/381 (52%), Gaps = 29/381 (7%)

Query: 15  DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D  P D    RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  
Sbjct: 3   DPAPSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMD 59

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L 
Sbjct: 60  DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP
Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I   +G+
Sbjct: 175 VGELEKPEVRKIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTDGE 232

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303
           ++GRH+G++ +TIGQR+GLG+     A  EP +V+  D +++ +IVG       L    +
Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLDNNVLIVGQGNEHPLLFSGAL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              EI W+        +    +   K+R  Q   P  +++   G    F+  +  V  GQ
Sbjct: 293 LASEIYWVN----PIDLSTPRRLTAKVRYRQGDQPCTLEKTATGYRATFDDPQRAVTPGQ 348

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGG+I 
Sbjct: 349 SVVFYDGEI----CLGGGVIE 365


>gi|212696912|ref|ZP_03305040.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676202|gb|EEB35809.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 369

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 204/369 (55%), Gaps = 22/369 (5%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDSSV A LLK +GYDV G+ ++ ++    +   G C A  D  DA +VC+ I +
Sbjct: 14  GVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
            +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + LGAD LATGH
Sbjct: 71  PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R      +DG+ +  M R +D  +DQ+YFL   +Q Q+ D+ FP+G++ K+ VR +A+
Sbjct: 131 YARVDR---EDGETK--MLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGNLDKKEVRKIAK 185

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E  L  ADK DS  ICF+ +  + + +   N   A EG+IV  +G ++G+H G++ +TIG
Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLS--NYLPAKEGNIVDTDGNVMGKHYGLMYHTIG 243

Query: 266 QRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL-GDGLFEDAV 320
           QRRGLG+   GE  FV   D   + +IV      E L  +R+    ++ +   GL ++  
Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSISAKGLKKE-- 301

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F C  K R  Q  +   V+  DDG V + ++K++  V  GQA VFY  +      + 
Sbjct: 302 ---FDCTCKFRYRQKDINSHVKILDDGKVEITYDKTKA-VTPGQAAVFYDGEVCLGSCII 357

Query: 380 GGIISGSKR 388
             + +G+KR
Sbjct: 358 DEVYNGNKR 366


>gi|284925349|gb|ADC27701.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 338

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+   D    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 331 VIASGFI 337


>gi|188528124|ref|YP_001910811.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Shi470]
 gi|229486342|sp|B2UV99|MNMA_HELPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188144364|gb|ACD48781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori Shi470]
          Length = 342

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++         +K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNGEYS-----IKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|4155868|gb|AAD06840.1| putative TRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           [Helicobacter pylori J99]
          Length = 360

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 37/384 (9%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 6   ARLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 58

Query: 67  CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                D+Y  +A++ C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +
Sbjct: 59  ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLM 114

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF   L    +LG + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + 
Sbjct: 115 KFGLALDHALKLGCEKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEV 169

Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +  L FPLGD+ K+ ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  + 
Sbjct: 170 IAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 226

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299
            EG + +L G+++G H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L 
Sbjct: 227 KEGVVKNLQGEVIGTHKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLA 286

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
            H +  +  +   D  F+D      + F+K R    P   FV   D  + V+F++   GV
Sbjct: 287 THSLKAKNKSLTKD--FKDG-----EYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGV 339

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A GQA V Y  D     +LGGG+I
Sbjct: 340 AKGQALVVYKDDI----LLGGGVI 359


>gi|213970042|ref|ZP_03398174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato T1]
 gi|213925146|gb|EEB58709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato T1]
          Length = 376

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 26/375 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 8   NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     L
Sbjct: 65  QAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++GRH
Sbjct: 180 KPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI
Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+        +    K   K+R  Q   P  +++   G    F+  +  V  GQ+ VFY
Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVVFY 353

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG+I
Sbjct: 354 DGEI----CLGGGVI 364


>gi|330828858|ref|YP_004391810.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Aeromonas veronii B565]
 gi|328803994|gb|AEB49193.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Aeromonas veronii B565]
          Length = 368

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 201/373 (53%), Gaps = 27/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADAKAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
           D + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     +LGA 
Sbjct: 64  DKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGAT 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      DD   R  + R +D  +DQSYFL+  +++Q+    FP+GD++K  
Sbjct: 124 YIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEKQVGQSLFPVGDLEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++ L  A K DS  ICF+ + K+ D + +     A  G I  ++G+++G H G+
Sbjct: 179 VRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGKIETVDGKVIGEHQGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + +T+GQR+GLG+     A  E  +VV   +++N   V  G    L    +   +++W+ 
Sbjct: 237 MYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHPRLYSDGLIASQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  + +  +C VK R  Q  +P  +Q  +D+ + V F++ +  V  GQ+ VFY  +
Sbjct: 297 ----RTPIREPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGE 352

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 353 V----CLGGGIIE 361


>gi|117617943|ref|YP_855954.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166234841|sp|A0KI53|MNMA_AERHH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117559350|gb|ABK36298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 368

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 201/373 (53%), Gaps = 27/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADAKAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
           D + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     +LGA 
Sbjct: 64  DKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGAT 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      DD   R  + R +D  +DQSYFL+  ++ Q+    FP+GD++K  
Sbjct: 124 YIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEAQVGQSLFPVGDLEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++ L  A K DS  ICF+ + K+ D + +     A  G I  ++G+++G H G+
Sbjct: 179 VRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGEHQGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + +T+GQR+GLG+     A  E  +VV   +++N+  V  G    L    +   +++W+ 
Sbjct: 237 MYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q+ +P  +Q  +D+ + V F++ +  V  GQ+ VFY  +
Sbjct: 297 ----RTPIRAPRRCTVKTRYRQEDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGE 352

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 353 V----CLGGGIIE 361


>gi|313498097|gb|ADR59463.1| MnmA [Pseudomonas putida BIRD-1]
          Length = 374

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLDEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G    ++ + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGTLTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    VD     +   K+R  Q      ++R   G    F++ +  V  GQ+ VF
Sbjct: 293 LASEIFWVNPVDLGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIEAAE 368


>gi|91203955|emb|CAJ71608.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 336

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 182/342 (53%), Gaps = 16/342 (4%)

Query: 44  GYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
           GY+V+G+ ++L      A  +   CC+ +D  DAR V + + +  +V +++E F + +I 
Sbjct: 5   GYEVVGLFMRLGLEKLDAMTKTKVCCSLEDANDARTVAEQLGIQFHVLNFKEAF-DHIID 63

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162
            F + Y  G TP PC+ CN+ +KF  LL+  + L AD +ATGHY +   +       R +
Sbjct: 64  HFCTEYLNGRTPNPCIMCNQELKFGKLLNFAKMLNADFVATGHYAKVEKH-----NDRFL 118

Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
           + +  DL ++QSY LF+  Q+QL    FPLG + KESVR +A+++ L   DK +SQDICF
Sbjct: 119 LKKGDDLNKEQSYVLFSLNQEQLSKTLFPLGTLTKESVRRIAKDLNLKTKDKPESQDICF 178

Query: 223 VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282
           V    Y  ++        + G I    G ILG H G   +TIGQR+GLGVA G P +VV 
Sbjct: 179 VLDNNYHSLLYERYGNHIIPGPIKDRQGNILGEHQGAPFFTIGQRKGLGVAFGSPRYVVD 238

Query: 283 LDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           ++   + VI+G  + LE   +    +NW+     E  +    +   KIR    P    V 
Sbjct: 239 INPRENAVIIGTDKDLEETGLIASSLNWISVQQLELPM----EVQAKIRYHHMPAHATVS 294

Query: 343 R-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
               D V V F + +  +  GQA VFY +D+    V+GGG I
Sbjct: 295 PFGTDKVRVHFNEPQKAITPGQAVVFYDNDT----VVGGGWI 332


>gi|254779876|ref|YP_003057982.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori B38]
 gi|254001788|emb|CAX30019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B38]
          Length = 342

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    QLG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALQLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P    V   D+ + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAHVSLRDEVIEVEFKEPFYGVAKGQALVVYQDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|320008432|gb|ADW03282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 377

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 200/381 (52%), Gaps = 25/381 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  + + + DDG R   M R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHY--ATVVLKDDGTRE--MHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDI+  +G  +G
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGGPA-EGDILDESGAKVG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300

Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            G          G   +  ++R+      V  +  D  ++V F +   GVA GQA V Y 
Sbjct: 301 CG------TAPSGPGTYTAQLRAHGGETEVTAELTDGTLHVTFTEPVRGVAPGQAVVLY- 353

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              +  RV+G   I+ + R +
Sbjct: 354 ---DGTRVVGSATIATTVRRE 371


>gi|301381398|ref|ZP_07229816.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058396|ref|ZP_07249937.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           K40]
 gi|302130355|ref|ZP_07256345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 366

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++   G    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|300783583|ref|YP_003763874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Amycolatopsis mediterranei U32]
 gi|299793097|gb|ADJ43472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Amycolatopsis mediterranei U32]
          Length = 363

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 197/377 (52%), Gaps = 24/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +++  + R GS  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  Y++D+ ERF   V+  F   YAAG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADILGIPFYIWDFAERFTEEVVETFVGEYAAGRTPNPCVTCNEKIKFEALLEKAMALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +RL V D     R   R  D  +DQSY L + T  QL    FPLGD  K 
Sbjct: 120 DAVATGHY--ARLTVVDGVPELR---RSADSGKDQSYVLASLTPDQLSHAMFPLGDSWKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL-NGQILGRH 256
            VR  A   GL +A+K DS DICF+  G   D  K +   +    G++V    G +LGRH
Sbjct: 175 DVRAEAERRGLSVANKPDSHDICFIPDG---DTKKFLENRLGQRPGELVDAETGAVLGRH 231

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL- 311
            G+  +T+GQR+GLG+      G P +V+ L+  S  V VG    L V  I      W  
Sbjct: 232 TGVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGSVKVGSVADLGVKVIEADRATWPS 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G  L E       +C V++R+    V      +DD + V   +   GVA GQ  V Y  D
Sbjct: 292 GRPLTEPT-----ECVVQVRAHGGIVDAVADVDDDTMTVHLREPLRGVAPGQVVVLYRPD 346

Query: 372 SNEAR-VLGGGIISGSK 387
             +   VLG   ISG++
Sbjct: 347 PGDGDVVLGSAKISGTR 363


>gi|158312934|ref|YP_001505442.1| tRNA-specific 2-thiouridylase MnmA [Frankia sp. EAN1pec]
 gi|205816861|sp|A8L536|MNMA_FRASN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158108339|gb|ABW10536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EAN1pec]
          Length = 355

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 195/371 (52%), Gaps = 32/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S  AS R G+  CC  +D  DARR
Sbjct: 4   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRS-PASDRVGARGCCTLEDARDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  ERF   VI  F + Y+AG TP PCV CN  +KF+ +L     LG 
Sbjct: 63  AADVLGIPFYVWDLAERFETEVIDEFVADYSAGRTPNPCVRCNERIKFAAVLEKALALGF 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    + +DG  RR     +D  +DQSY L     +QL   RFPLGD  K 
Sbjct: 123 DAVVTGHHAR----LDEDGTLRRS----VDPAKDQSYVLGTLRPEQLAAARFPLGDSTKA 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHL-NGQILGRH 256
            VR+ A   GL +ADK DS DICFV  G     ++ R+       G +V    G+ LG H
Sbjct: 175 QVREEAARRGLAVADKPDSHDICFVASGDTGAWLRERLG---PRPGPVVDAETGETLGEH 231

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   +T+GQRRGLG+      G P +V+ +   +S V VGP  +L++  +    I W  
Sbjct: 232 DGAYAFTVGQRRGLGLGRPAPDGRPRYVLEISPATSTVTVGPSSALDMRSLVAERIVWPH 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           DG           C  ++R+    VP  V    D + V   +   G A+GQA VFY  D 
Sbjct: 292 DGP--------VSCTAQVRAHGGVVPAVVTARGDELDVRLAEPVRGTAAGQAVVFYDGD- 342

Query: 373 NEARVLGGGII 383
              RVLGGG I
Sbjct: 343 ---RVLGGGRI 350


>gi|212712841|ref|ZP_03320969.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
           30120]
 gi|212684533|gb|EEB44061.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
           30120]
          Length = 385

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 32/377 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY VIG+ ++ +      +    C A  D+ DA+ VC
Sbjct: 25  IKVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNWEEDDDEEY---CSAATDLADAQAVC 81

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +     ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD
Sbjct: 82  DKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 141

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R R     DGK +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 142 YIATGHYVRRR---DVDGKSQ--LLRGLDNNKDQSYFLYTLSHEQVAKSLFPVGELEKPE 196

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+I+G+H G+
Sbjct: 197 VRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGEIIGQHEGL 254

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GLG+        EP +VV  D  ++++IV      PR  L    +  ++++
Sbjct: 255 MYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNQLIVAQGHEHPR--LMSVGLIAQQLD 312

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+        + +  +C VK R  Q  +P  +   + + + V F+     V  GQ+ VFY
Sbjct: 313 WVD----RQPLTEPLRCVVKTRYRQADIPCTITPLSAEKIQVIFDYPVAAVTPGQSAVFY 368

Query: 369 TSDSNEARVLGGGIISG 385
             +      LGGG+I  
Sbjct: 369 IDEV----CLGGGVIEA 381


>gi|19552461|ref|NP_600463.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC
           13032]
 gi|62390127|ref|YP_225529.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC
           13032]
 gi|145295379|ref|YP_001138200.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum R]
 gi|24638303|sp|Q8NR24|MNMA_CORGL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234850|sp|A4QDK1|MNMA_CORGB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21324007|dbj|BAB98633.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325463|emb|CAF19943.1| TRNA-METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032]
 gi|140845299|dbj|BAF54298.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 365

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 199/371 (53%), Gaps = 19/371 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V A+     G++V+GV L L    +  +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDNFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG  R    R +D  +DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPADGGDGYLR----RGVDPNKDQSYVLGVLGAHEIEHCMFPVGDTIKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   G  +A K DS DICF+  G     + + + G+   G IV   G  L  H G
Sbjct: 177 EIREEASAAGFSVAKKPDSYDICFIPDGNTQAFLGK-HIGMR-PGMIVDQEGTQLREHAG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GL +    A G P +V  +D  +  V VG RE+L++  I+   + +L   
Sbjct: 235 VHEFTIGQRKGLDIKAPAADGRPRYVTDIDAKTGTVTVGTRENLKISTIHADRLKFLHPA 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +  D  +D   C V++R+    V     + R+ D + ++  +   GVA GQA V Y  D+
Sbjct: 295 M--DGQID---CEVQVRAHGGVVSCSATIDRDADFMVLNLNEPLQGVARGQAAVLYLPDA 349

Query: 373 NEARVLGGGII 383
           +   VLG G I
Sbjct: 350 DGDIVLGSGTI 360


>gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1273]
 gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1273]
          Length = 376

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 199/377 (52%), Gaps = 27/377 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A   GL  A K DS  ICF+ +  + D +   N   A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATAAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +      +Y  E     
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           + W+ +   E      FKC  K R  Q    V VQ  D+  V +  ++    +  GQA V
Sbjct: 294 VGWVSNKAKETE----FKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LGG  I
Sbjct: 350 FYDGD----ECLGGATI 362


>gi|217032089|ref|ZP_03437589.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128]
 gi|216946237|gb|EEC24845.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128]
          Length = 342

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F+NAV   F S+Y  G+TP PC  CN  +KF   L    QLG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLKGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L +  +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLAMRFLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKSG-----EYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|221134862|ref|ZP_03561165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola sp. HTCC2999]
          Length = 372

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 202/384 (52%), Gaps = 32/384 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P D +V+V MSGGVDSSV A LLK+ G+ V GV ++ +      +    C A +D+ DA 
Sbjct: 9   PADTKVIVGMSGGVDSSVSAYLLKQQGFQVEGVFMKNWEEDDNDEY---CAAAEDLADAH 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136
            V D + ++ +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L
Sbjct: 66  AVADKLGITLHSINFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEYAAEDL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY+ SR   GD  +    M R  D  +DQSYFL+  + + +    FP+G ++
Sbjct: 126 GADYIATGHYV-SRAKNGDKWE----MLRGFDQNKDQSYFLYTLSHEHIAKTLFPIGHLE 180

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K +VR++A   GL   DK DS  ICF+ + K+ D + +     A  GDI    G+ +G H
Sbjct: 181 KPTVREIAEAQGLVTHDKKDSTGICFIGERKFTDFLSQYLP--AQPGDIYTFEGEKIGEH 238

Query: 257 NGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLR 306
            G++ +T+GQR+GL +        EP +VV  D  ++R+IVG     PR  L  + +  +
Sbjct: 239 QGLMYHTLGQRKGLLIGGTRDHGDEPWYVVDKDMTNNRLIVGQGANHPR--LYSNGLIAK 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           +++W+       A+ +  +  VK R  Q  +   V   +DD V V F+  +  V  GQ+ 
Sbjct: 297 QLDWVS----RTALTEPTRMTVKTRYRQADIDCIVTPIDDDSVEVIFDTPQKAVTPGQSA 352

Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389
           VFY         LGGGII    RS
Sbjct: 353 VFYQG----PVCLGGGIIESYIRS 372


>gi|57237061|ref|YP_178073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni RM1221]
 gi|86149727|ref|ZP_01067957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86151459|ref|ZP_01069674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86154052|ref|ZP_01072253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597704|ref|ZP_01100937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926860|ref|ZP_01810538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356437|ref|ZP_03223201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218561738|ref|YP_002343517.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|14195288|sp|Q9PJ66|MNMA_CAMJE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658012|sp|Q5HXB2|MNMA_CAMJR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57165865|gb|AAW34644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni RM1221]
 gi|85839995|gb|EAQ57254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85841806|gb|EAQ59053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842466|gb|EAQ59680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190008|gb|EAQ93984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359444|emb|CAL34227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|145844437|gb|EDK21545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345624|gb|EDZ32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315057493|gb|ADT71822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315929157|gb|EFV08382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 338

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+   D    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|296272288|ref|YP_003654919.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096463|gb|ADG92413.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 376

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 201/378 (53%), Gaps = 34/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARRVC 80
           +VVV MSGGVDSSV A LLK+ GYDVIG+ ++ +        KGS C  + +  DA++V 
Sbjct: 14  KVVVGMSGGVDSSVTALLLKQQGYDVIGLFMRNWEY----GIKGSQCPNRIEFEDAKKVG 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I +     D+ E +R  V   F      G TP P + CNR +KF+  L+  +++GADV
Sbjct: 70  ELIGIEVLGKDFVEEYRTKVFDVFLEGLKKGLTPNPDILCNREIKFNVFLNEAKKMGADV 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +   Y     K   ++  P D  +DQSYFL A + +QL    FPLGD+ K+ V
Sbjct: 130 IATGHYAKIAKY-----KDHYVLDTPKDSSKDQSYFLHALSSEQLSHAMFPLGDLTKKEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++AR   L ++DK DS  ICF+   ++ + + +     A+ GDIV  NG++LGRH G+I
Sbjct: 185 REIARLHNLPVSDKKDSTGICFIGNQRFDEFITQHLK--AIPGDIVDENGKVLGRHKGLI 242

Query: 261 NYTIGQRRGLGVA----------MGEPLFVVY--LDKNSSRVIVGPRESLEVHR-IYLRE 307
            YT+GQR+G+G+           +  P +     ++ N+  V+      L +++ +    
Sbjct: 243 CYTLGQRKGIGLGGIKETETANHIHNPWYAAKKNMEDNTLTVVQDTNHPLLMNQSVEASH 302

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W    + E+A   G K   +IR  Q      V     D V V F+K +  V  GQ+ V
Sbjct: 303 MHW----VLEEAPKVGDKLMAQIRYRQQKQACTVTEVTGDKVLVQFDKPQRAVTLGQSLV 358

Query: 367 FYTSDSNEARVLGGGIIS 384
            Y  D      LGGG IS
Sbjct: 359 LYEGD----YCLGGGFIS 372


>gi|153875033|ref|ZP_02003007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beggiatoa sp. PS]
 gi|152068503|gb|EDN66993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beggiatoa sp. PS]
          Length = 359

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 196/372 (52%), Gaps = 27/372 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+V MSGGVDSSV A LLK+ GY+V G+ ++ +   +    +  C A +DV DA+ VC
Sbjct: 1   MKVIVGMSGGVDSSVAALLLKKQGYEVQGLFMKNW---EEDDTENYCSAAEDVRDAQAVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           DT+ +  +  ++   + + V       Y AG TP P + CNR +KF   L     LG   
Sbjct: 58  DTLEIPLHTVNFATEYWDNVFTHCLQEYQAGRTPNPDILCNREIKFKVFLEHALHLGGKA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R    +G +    +++ +  D  +DQSYFL+   Q QL    FP+G+++K  V
Sbjct: 118 IATGHYVR----LGKNNAHYQLL-KGHDPNKDQSYFLYTLGQSQLAHSLFPIGELQKTQV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA + GL    K DS  ICF+ +  +   + R        G +    G++LG+H+G++
Sbjct: 173 RQLAEQAGLATYAKKDSTGICFIGERPFKAFLSRFLP--TQPGPMETPEGEVLGQHDGLM 230

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT+GQR+GL +       GEP +VV  D  ++R+IVG   +   L    +  ++++W+ 
Sbjct: 231 YYTLGQRQGLNIGGQVGGSGEPWYVVAKDMPNNRLIVGQGHNHPLLFCDGLKAQQLHWI- 289

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            G+   A    F C  K R  Q   P V    +++   V F + +  V  GQ+ VFY +D
Sbjct: 290 SGI---APSLPFSCSAKTRYRQTEQPCVITALDNETCEVHFNQPQRAVTPGQSVVFYQND 346

Query: 372 SNEARVLGGGII 383
                 LGG II
Sbjct: 347 ----ECLGGAII 354


>gi|329568350|gb|EGG50159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1467]
          Length = 374

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  +  V+VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTYNVLVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|28870522|ref|NP_793141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|37999578|sp|Q87ZR6|MNMA_PSESM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28853770|gb|AAO56836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 376

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 26/375 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 8   NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     L
Sbjct: 65  QAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++GRH
Sbjct: 180 KPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI
Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+        +    K   K+R  Q   P  +++   G    F+  +  V  GQ+ VFY
Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVVFY 353

Query: 369 TSDSNEARVLGGGII 383
             +      LGGG+I
Sbjct: 354 DGEI----CLGGGVI 364


>gi|298735640|ref|YP_003728165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
 gi|298354829|emb|CBI65701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
          Length = 360

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 210/384 (54%), Gaps = 37/384 (9%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 6   ARLRAITHNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 58

Query: 67  CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                D+Y  +A++ C+ + +   V D+++ F+NAV   F S+Y  G+TP PC  CN  +
Sbjct: 59  ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLM 114

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF   L    QLG + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + 
Sbjct: 115 KFGLALDHALQLGCEKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEV 169

Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +  L FPLGD+ K+ ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  + 
Sbjct: 170 IAKLVFPLGDLLKKDIKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 226

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299
            EG + +L G+I+G H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L 
Sbjct: 227 KEGVVKNLKGEIIGTHKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLA 286

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
           +  +  +  + + D  F+       + F+K R    P   FV   D+ + V+F++   GV
Sbjct: 287 MRFLKAKNKSLMKD--FKSG-----EYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGV 339

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A GQA V Y  D     +LGGG+I
Sbjct: 340 AKGQALVVYKDDI----LLGGGVI 359


>gi|330940375|gb|EGH43479.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 366

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVNP 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                      +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 293 IDLSSPP----RLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|147669349|ref|YP_001214167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. BAV1]
 gi|146270297|gb|ABQ17289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. BAV1]
          Length = 361

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 188/362 (51%), Gaps = 20/362 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSSV A LL   GY+V GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 12  VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 68

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+ HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL+  +   AD LA
Sbjct: 69  LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 128

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY  +R+   ++G     + R  D ++DQSYFL+    + L  L FPLG   K+ +  
Sbjct: 129 TGHY--ARIVSDENGTH---LLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 183

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA  M L ++ K +SQD+CF+  G Y   +     G    G I+   G+ILG H G+  Y
Sbjct: 184 LATNMKLPVSQK-ESQDVCFIPDGDYKSFLA-TRMGFT-PGKILDTTGKILGEHQGLPLY 240

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLG+A  E LFV  ++ +++ + V   + L   RI L    W   G+     +D
Sbjct: 241 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIWRESGI----PLD 296

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSDSNEARVLGGG 381
                VK+R    P  V         Y+    S V  A+ GQA V Y  D     VLGGG
Sbjct: 297 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 352

Query: 382 II 383
           II
Sbjct: 353 II 354


>gi|310828741|ref|YP_003961098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
 gi|308740475|gb|ADO38135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
          Length = 359

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV MSGGVDSSV A LLK+ GYDVIGV ++ +  +      G C A +D  D +RVC
Sbjct: 1   MKIVVGMSGGVDSSVAALLLKQQGYDVIGVFMKNWEEKDED---GVCTATEDYEDVQRVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
           +TI++ +Y  ++   + + V   F   Y  G TP P V CN+ +KF   L     + G D
Sbjct: 58  ETIDIPYYTVNFTREYYDHVFAYFLDEYKKGRTPNPDVLCNKEIKFKRFLDYALGVVGGD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           VLATGHY +  ++   +GK R I  R  D  +DQ+YFL    Q QL ++ FP+G + K+ 
Sbjct: 118 VLATGHYAQKDVH---EGKFRLI--RAFDHNKDQTYFLCQLGQHQLENVMFPIGHLDKKE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A +  L  ADK DS  ICF+ +  +   + +     A  G+I  L+G I G+H G+
Sbjct: 173 VREIAEKNNLITADKKDSTGICFIGERNFTKFLSQYLP--AQPGEIRDLDGNIKGKHEGL 230

Query: 260 INYTIGQRR---GLGVAMGEPLFVVY--LDKNSSRVIVGPRE-SLEVHRIYLREINWLGD 313
           + YT+GQRR     G   GEP FVV   L  N   V+ G +  +L    +   + +W+  
Sbjct: 231 MYYTLGQRRGLGIGGQGTGEPWFVVEKDLKDNVLYVVQGEKHPALYSRSLEATDTSWVAG 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +A    F C  K R  Q    V V  R+D G++VDF+K +  V  GQ  V Y    
Sbjct: 291 ----EAPAREFSCTAKFRYRQPDQGVHVTVRDDGGLHVDFDKDQKAVTPGQEVVLYDGQV 346

Query: 373 NEARVLGGGII 383
                LGG  I
Sbjct: 347 ----CLGGATI 353


>gi|161353441|ref|NP_223972.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori J99]
 gi|205371768|sp|Q9ZJQ0|MNMA_HELPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P   FV   D  + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKDG-----EYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|320323780|gb|EFW79864.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327920|gb|EFW83925.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 366

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W   
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWAN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|269123624|ref|YP_003306201.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptobacillus moniliformis DSM 12112]
 gi|268314950|gb|ACZ01324.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptobacillus moniliformis DSM 12112]
          Length = 359

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 201/370 (54%), Gaps = 27/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GY+VIGV ++ +  +  +   G C +  D  D   V +
Sbjct: 4   RVVLGMSGGVDSSVAAILLKEAGYEVIGVFMKNWEEKDEN---GVCMSDIDYEDVISVAE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +Y  ++ + + + V   F S Y    TP P V CN+ +KF   L    +LGAD +
Sbjct: 61  QLEIPYYSVNFVKEYWDRVFEYFLSEYRLARTPNPDVMCNKEIKFKAFLDYANKLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +RL   + G+  +++ R +D  +DQSYFL    Q+QL  + FP+G+ +K  +R
Sbjct: 121 ATGHY--ARLTTNEKGE--KVLLRGVDNNKDQSYFLCGLNQKQLEKVLFPIGEYEKTEIR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +  L  A K DS  ICF+ +  + + + +     A +G+IV +NG ILG H+G++ 
Sbjct: 177 KIAEKYNLKTAKKKDSTGICFIGERNFNEFLSKYLP--AKDGNIVDINGNILGSHHGLMY 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           YTIGQR+G+G+       GEP FVV   ++KN   V  G    L    +   + N++ + 
Sbjct: 235 YTIGQRKGIGLGNTKEGTGEPYFVVDKNVEKNELIVAQGDDNLLYSKGLIANKFNFINE- 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
                +   F+C VK R  Q+ V   + + ++  Y + F++ +  V  GQ  V Y  +  
Sbjct: 294 -----IELPFRCTVKFRYRQNDVSAVIDKIEEDRYQIIFDEKQRAVTLGQIVVLYDGE-- 346

Query: 374 EARVLGGGII 383
             + LGGGII
Sbjct: 347 --KCLGGGII 354


>gi|73748589|ref|YP_307828.1| tRNA-specific 2-thiouridylase MnmA [Dehalococcoides sp. CBDB1]
 gi|289432615|ref|YP_003462488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. GT]
 gi|123619640|sp|Q3ZXD7|MNMA_DEHSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205814533|sp|A5FR85|MNMA_DEHSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73660305|emb|CAI82912.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. CBDB1]
 gi|288946335|gb|ADC74032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. GT]
          Length = 357

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 188/362 (51%), Gaps = 20/362 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSSV A LL   GY+V GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 8   VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+ HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL+  +   AD LA
Sbjct: 65  LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY  +R+   ++G     + R  D ++DQSYFL+    + L  L FPLG   K+ +  
Sbjct: 125 TGHY--ARIVSDENGTH---LLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA  M L ++ K +SQD+CF+  G Y   +     G    G I+   G+ILG H G+  Y
Sbjct: 180 LATNMKLPVSQK-ESQDVCFIPDGDYKSFLA-TRMGFT-PGKILDTTGKILGEHQGLPLY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLG+A  E LFV  ++ +++ + V   + L   RI L    W   G+     +D
Sbjct: 237 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIWRESGI----PLD 292

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSDSNEARVLGGG 381
                VK+R    P  V         Y+    S V  A+ GQA V Y  D     VLGGG
Sbjct: 293 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 348

Query: 382 II 383
           II
Sbjct: 349 II 350


>gi|256380038|ref|YP_003103698.1| tRNA-specific 2-thiouridylase MnmA [Actinosynnema mirum DSM 43827]
 gi|255924341|gb|ACU39852.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Actinosynnema mirum DSM 43827]
          Length = 362

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 189/366 (51%), Gaps = 33/366 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L +++  + R GS  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F + YAAG TP PC+ CN  +KF  LL     LG 
Sbjct: 60  AADVLGIPFYVWDFAERFTEDVVEDFVAEYAAGRTPNPCLRCNERIKFEALLDKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +RL V D     R   R  D  +DQSY L + T++QL    FPLG   K 
Sbjct: 120 DAVCTGHY--ARLDVVDGSVELR---RSADEGKDQSYVLASLTREQLAHAMFPLGGSTKV 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRIN--AGIALEGDIVHLNGQILGR 255
            VR  A   GL +A K DS DICF+  G     + KR+   AG+ ++ +     G +LG+
Sbjct: 175 EVRAEAARRGLSVAAKPDSHDICFIPDGDTQGFLTKRLGQRAGVLVDDE----TGAVLGQ 230

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY----LRE 307
           H G+  +T+GQR+GLG+      G P +V+ L+  S  V VG  E L V  I     +  
Sbjct: 231 HVGVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVRVGAAEKLAVREIVAVRPVSR 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           ++W G            +C  ++R+     P   +   + + V   +   GVA GQA   
Sbjct: 291 VDWSGP----------VECVAQVRAHGGTAPAIAELVGEELVVRLREPLSGVAPGQAVAV 340

Query: 368 YTSDSN 373
           Y  D  
Sbjct: 341 YREDPE 346


>gi|325003016|ref|ZP_08124128.1| tRNA-specific 2-thiouridylase MnmA [Pseudonocardia sp. P1]
          Length = 366

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 199/381 (52%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +R A  R GS  CC+ +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSRTRDA-MRSGSRGCCSKEDSADAAR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + +YV+D  E F   V+  F ++YAAGETP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADVLGIPYYVWDLSEEFARDVVDDFVAAYAAGETPNPCLRCNEKIKFAAVLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R    V         + R  D ++DQSY L      QL    FP+GD  K 
Sbjct: 120 DAVCTGHYARLDPAVPS-------LRRSADADKDQSYVLAVLRADQLRHAMFPVGDTPKP 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHL-NGQILGRH 256
            +R  A  +GL +A K DS DICF+  G     ++ R+    +  G++V    G +LG H
Sbjct: 173 EIRAEAERLGLRVAGKPDSHDICFIPTGDTQGFLRERLG---SQPGELVDAGTGDVLGSH 229

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+  +T+GQR+GLG+    A G P +V+ ++  S  V VGP  +L+V  I  R   W  
Sbjct: 230 DGVHGFTVGQRKGLGIDRPAADGRPRYVLGIEPVSGTVRVGPESALDVSGITARSPVWTS 289

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RND---DGVYVDFEKSEVGVASGQACV 366
            G  +      F C V++R+     P  V    R D   DGV +   +   GVA GQA  
Sbjct: 290 GGAPDGP----FGCVVQVRAHGGIAPAEVTPSGRGDDGVDGVEIALAEPLRGVAPGQAVA 345

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY  D +   VLG   I+ + 
Sbjct: 346 FYRPDDDGDVVLGSATITATS 366


>gi|297620680|ref|YP_003708817.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Waddlia chondrophila WSU 86-1044]
 gi|297375981|gb|ADI37811.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Waddlia chondrophila WSU 86-1044]
          Length = 354

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 196/366 (53%), Gaps = 22/366 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK+ GY VIG+ ++ +  + +    G C +  D  D  RVCD 
Sbjct: 5   VVVGLSGGVDSAVAALLLKQQGYSVIGLFMKNWEEKDSD---GQCSSAADYEDVSRVCDL 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++ +Y  ++ + + ++V       +  G TP P V CNR +KF  L    ++LG D LA
Sbjct: 62  LDIPYYGVNFSQEYWDSVFADCLEEFKKGHTPNPDVLCNREIKFKVLFEKAKELGGDYLA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R+R+Y G+       + +  D ++DQSYFL+      L  + FP+G + K+ VR+
Sbjct: 122 TGHYCRTRIYEGE-----AQLLKGADPDKDQSYFLYMIKSDILQSVLFPIGSLPKKEVRE 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +AR   L +  K DS  ICF+ +  + + + +  +     G+   ++G+ +GRH+G+  Y
Sbjct: 177 IARRHNLPVHSKKDSTGICFIGERNFKEFLGQYIS--FAPGEFQTMDGKTVGRHDGVPFY 234

Query: 263 TIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFED 318
           TIGQRRGLG+   G+  FVV  D   + V V       +L    +Y  E++W+     + 
Sbjct: 235 TIGQRRGLGIGGAGDAWFVVGKDVEKNIVFVEQGADHPALYATDLYADELSWVSS---KG 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377
           A    F C  KIR  Q   P  +   ++G+  V+F + +  V   Q+ VFY  D      
Sbjct: 292 APEKTFVCSSKIRYRQKDKPCRITAIEEGIARVEFPEKQRAVTPRQSIVFYDGDV----C 347

Query: 378 LGGGII 383
           LGGG+I
Sbjct: 348 LGGGMI 353


>gi|302185016|ref|ZP_07261689.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae 642]
 gi|330981378|gb|EGH79481.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 366

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|27904738|ref|NP_777864.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29428172|sp|P59460|MNMA_BUCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27904135|gb|AAO26969.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 370

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 200/379 (52%), Gaps = 36/379 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+VAMSGGVDSSV A +LK+ GY V G+ ++ +     S     C + +D+ DA+ V
Sbjct: 5   NKKVIVAMSGGVDSSVTAWILKKKGYHVEGLFMKNWEEHN-SDSDMHCSSKKDLSDAQGV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           C+ +N+  +  ++   +   V   F   Y  G TP P V CN+ +KF      + Q L A
Sbjct: 64  CNQLNIFLHKVNFSFEYWENVFQKFLFEYKMGRTPNPDVLCNKEIKFKIFFEYSIQDLQA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY++ R++     K +  + R +D  +DQSYFL+   Q+ L    FP+G + K 
Sbjct: 124 HYIATGHYVQKRIF-----KNKYFLLRGLDATKDQSYFLYTINQKVLKQCLFPIGHLTKC 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257
            VR +AR + L +A K DS  ICF+      ++ K +N  +  + G+I+   GQ +G+H 
Sbjct: 179 EVRKIARRINLIVAKKKDSTGICFISPQ---NIKKFLNHYLPHKSGNIITTLGQKIGQHY 235

Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL------- 305
           G+I+YTIGQRRGLG+         P +VV  D  ++ +IV    S  ++  YL       
Sbjct: 236 GLIHYTIGQRRGLGIGGIKGFNNIPWYVVSKDITNNSLIV----SQGMNNFYLMSIGLIA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQA 364
            E++W+ D      + + F C  KIR     +P   V      + V FE+ E  VA GQ+
Sbjct: 292 NELHWIND----INIQNSFFCTAKIRYRHIDIPCKIVMHKKKQIKVLFERPESSVAPGQS 347

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY SD      LGGGII
Sbjct: 348 VVFYLSD----LCLGGGII 362


>gi|312961679|ref|ZP_07776177.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6]
 gi|311283938|gb|EFQ62521.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6]
          Length = 374

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 199/381 (52%), Gaps = 29/381 (7%)

Query: 15  DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D  P D    RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  
Sbjct: 3   DPAPSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMD 59

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L 
Sbjct: 60  DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP
Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+
Sbjct: 175 VGELEKPEVRRIAEQHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303
           ++GRH+G++ +TIGQR+GLG+     A  EP +V+  D  ++ ++VG       L    +
Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLENNVLVVGQGNEHPLLFSGAL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              EI W+      D  V   +   K+R  Q   P  +++   G    F+  +  V  GQ
Sbjct: 293 LASEIYWVNP---IDLSVP-RRLTAKVRYRQSDQPCTLEKTASGYRATFDDPQRAVTPGQ 348

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGG+I 
Sbjct: 349 SVVFYDGEI----CLGGGVIE 365


>gi|261346011|ref|ZP_05973655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rustigianii DSM 4541]
 gi|282565896|gb|EFB71431.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rustigianii DSM 4541]
          Length = 373

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 32/377 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V+G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 13  IKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEEY---CSAATDLADAQAVC 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +     ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD
Sbjct: 70  DKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 129

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R R     D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 130 YIATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSHEQIAKSLFPVGELEKPE 184

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G+H G+
Sbjct: 185 VRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQHEGL 242

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GLG+        EP +VV  D   +++IV      PR  L    +  ++++
Sbjct: 243 MYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVEKNQLIVAQGHEHPR--LMSVGLIAQQLD 300

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+        + +  +C VK R  Q  +P  +   + D + V F+     V  GQ+ VFY
Sbjct: 301 WVD----RQVLTEPLRCVVKTRYRQADIPCTITPLSADKIQVTFDYPVAAVTPGQSAVFY 356

Query: 369 TSDSNEARVLGGGIISG 385
             +      LGGG+I  
Sbjct: 357 IDEV----CLGGGVIEA 369


>gi|308177899|ref|YP_003917305.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter arilaitensis
           Re117]
 gi|307745362|emb|CBT76334.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter arilaitensis
           Re117]
          Length = 378

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 201/383 (52%), Gaps = 25/383 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTLEDSNDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ +RF   V+  F   Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACDKLGIPYYVWDFSDRFAEDVVQDFVDEYEAGRTPNPCMRCNEKIKFAALLEKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  +++   D+G     + R  D  +DQSY L   T +QL    FPL +   K
Sbjct: 120 DAVCTGHY--AKVLRDDEGNPE--LHRAADWAKDQSYVLGVLTHEQLEHCMFPLAETPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256
             VR  A   GL +A+K DS DICF+  G   D    +   I ++ G+IV   G  LG H
Sbjct: 176 AEVRAEAAARGLTVANKPDSYDICFIPDG---DTRGWLAERIEMKPGEIVDHEGNQLGEH 232

Query: 257 NGIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQR+GL      A G+P FV+ +    ++VIVGP   L V ++    I+W G
Sbjct: 233 EGAQAFTVGQRKGLRLGRPAADGKPRFVLEIRPKENKVIVGPEALLAVDQLRGIRISWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-----RNDDGVYVDFEKSEVGVASGQACVF 367
             + E    + F C V++R+  DPVP          + D + V+  +   GVA GQ  V 
Sbjct: 293 VPISEVFTGEKFDCMVQVRAHGDPVPAVAHMERSAESHDELVVNLPEGMRGVAPGQTMVV 352

Query: 368 YTSDSNEARVLGGGIISGSKRSD 390
           Y      +RVLG   I  ++ S+
Sbjct: 353 YQG----SRVLGQATIDSARSSE 371


>gi|261840049|gb|ACX99814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 52]
          Length = 342

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARIK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P    V   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAHVNLRDEVIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|157414371|ref|YP_001481627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|172046984|sp|A8FJL3|MNMA_CAMJ8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157385335|gb|ABV51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747016|gb|ADN90286.1| tRNA-specific 2-thiouridylase mnmA [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 338

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 197/367 (53%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D ++ F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V+   D    +  +    G+ASGQ  VFY  D    +
Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 331 VIASGFI 337


>gi|42518912|ref|NP_964842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii NCC 533]
 gi|73920127|sp|Q74JW9|MNMA_LACJO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41583198|gb|AAS08808.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii NCC 533]
          Length = 375

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L     L AD 
Sbjct: 64  DEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY  +R  V D+G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  V
Sbjct: 124 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 180 REIAIASGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   F
Sbjct: 238 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  VD  KC  K R  Q  V V +     D+ V+V+F++    V  GQA VFY   
Sbjct: 296 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 351

Query: 372 SNEARVLGGGII 383
            N    LGG  I
Sbjct: 352 -NGEECLGGATI 362


>gi|331017263|gb|EGH97319.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 366

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    K   K+R  Q   P  +++   G    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|307720640|ref|YP_003891780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978733|gb|ADN08768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 341

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 205/370 (55%), Gaps = 43/370 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR--RV 79
           +V+V MSGGVDS++ + LLK  GY+V G+ ++L+          S     +++ AR  + 
Sbjct: 4   KVLVGMSGGVDSTITSLLLKEQGYEVEGLYMKLH----------SKPGYHEIHQARAQKA 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +V D +E F   V  PF  +YA G+TP PC  CNR +KF +++    ++GA 
Sbjct: 54  ADFVGIKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMIKFADEIGAQ 113

Query: 140 VLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            LATGHYI++    LY  DD              +DQSYFLF   ++ L  L+FPLG+  
Sbjct: 114 YLATGHYIKTDGEYLYAADDDT------------KDQSYFLFYINREILPRLKFPLGERH 161

Query: 197 KESVRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           K+ +++LA  + GL+  + +++S +ICFV+   Y D++K     +   G+++   G ++G
Sbjct: 162 KKDIKELAASIKGLESFSSQAESSEICFVET-TYTDLLKDY-VKVDQVGEVLDQEGNVVG 219

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G ++YTIG+R+G  V    +P FV+ ++   ++++VG +E L  + + L  +N    
Sbjct: 220 EHKGYMHYTIGKRKGFTVHGAHDPHFVLSINPEKNQIVVGKKEDLACYDVKLNNLN---- 275

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            +F+D     F   VK+R     V   V+  +D  Y+  E+S  GVA GQA VFY  D  
Sbjct: 276 -MFDDR--KEFDTTVKLRYRTKAVKCNVKIENDVAYLKLEESVFGVAVGQAAVFYDDD-- 330

Query: 374 EARVLGGGII 383
             +++GGG I
Sbjct: 331 --KLIGGGWI 338


>gi|66046419|ref|YP_236260.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae B728a]
 gi|75501528|sp|Q4ZRK0|MNMA_PSEU2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|63257126|gb|AAY38222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. syringae B728a]
          Length = 376

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 26/376 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 8   NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     L
Sbjct: 65  QAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH
Sbjct: 180 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+     A  +P +V+  D  ++ +IVG       L    +   EI
Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSSEI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+        +    +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY
Sbjct: 298 YWVN----PIDLSSPRRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFY 353

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGG+I 
Sbjct: 354 DGEI----CLGGGVIE 365


>gi|327480910|gb|AEA84220.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 4166]
          Length = 362

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 32/373 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD 
Sbjct: 1   MIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADAQAVCDR 57

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD++A
Sbjct: 58  IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIA 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R R     D   R  + + +D  +DQSYFL A   +QL    FP+G+++K  VR 
Sbjct: 118 TGHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELEKPEVRA 172

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I  ++G+++GRH+G++ +
Sbjct: 173 IAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETVDGEVIGRHHGLMYH 230

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           TIGQR+GLG+     A  EP +V+  D   + +IVG       L    +   EI W+   
Sbjct: 231 TIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEIYWVNP- 289

Query: 315 LFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 VD     K   K+R  Q      +++  DG    FE  +  V  GQ+ VFY  +
Sbjct: 290 ------VDLSAPLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVVFYDGE 343

Query: 372 SNEARVLGGGIIS 384
                 LGGG+I 
Sbjct: 344 V----CLGGGVIE 352


>gi|329667542|gb|AEB93490.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii DPC 6026]
          Length = 375

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L     L AD 
Sbjct: 64  DEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY  +R  V D+G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  V
Sbjct: 124 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 180 REIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   F
Sbjct: 238 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  VD  KC  K R  Q  V V +     D+ V+V+F++    V  GQA VFY   
Sbjct: 296 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 351

Query: 372 SNEARVLGGGII 383
            N    LGG  I
Sbjct: 352 -NGEECLGGATI 362


>gi|227889771|ref|ZP_04007576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227849635|gb|EEJ59721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 383

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 194/372 (52%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 15  IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L AD 
Sbjct: 72  DEIGIPYYSINFEKDYWDRVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY  +R  V D+G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  V
Sbjct: 132 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLNQLSQDQLKKVIFPLANLTKPQV 187

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 188 REIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 245

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   F
Sbjct: 246 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 303

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  VD  KC  K R  Q  V V +     D+ V+V+F++    V  GQA VFY   
Sbjct: 304 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 359

Query: 372 SNEARVLGGGII 383
            N    LGG  I
Sbjct: 360 -NGEECLGGATI 370


>gi|194337468|ref|YP_002019262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309945|gb|ACF44645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 361

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 197/368 (53%), Gaps = 25/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVC 80
           +VVV +SGGVDS+V A LL   GY V G+ +++ ++   S   + S     D  D +   
Sbjct: 6   KVVVGISGGVDSAVSACLLVEQGYAVTGLNIRVLDAPDESPSLRPSPLVISDHPDFQIPV 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++N+S        +FR+ VI  F   Y  G TP PC+ CN+ +K+  L    R L AD 
Sbjct: 66  LSLNLSR-------KFRDEVIGYFHEDYLGGRTPNPCMVCNKKIKWFGLFEGLRLLDADF 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGH+  +      +G+ R  + +  D E+DQSYFL+  +Q  L    FPLG++ K  V
Sbjct: 119 VATGHFAATSF---SEGRYR--LYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA---LEGDIVHLNGQILGRHN 257
           R LAR  G+  A+K +SQ+ICFV Q  Y   +     G+A    +GDIV  +G+++G+H 
Sbjct: 174 RALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVDESGRVIGKHR 233

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQRRGLGV+  EPL+V  LD   +R+ VG + SLE   +    IN +G    E
Sbjct: 234 GYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKKSSLECSSLVASGINLIG---ME 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              +   + + KIR      P  ++   ++   V F   +  VA GQA VFY     +  
Sbjct: 291 RPNIP-IEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFY----RDRE 345

Query: 377 VLGGGIIS 384
           VLGGG I+
Sbjct: 346 VLGGGFIT 353


>gi|262394626|ref|YP_003286480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
 gi|262338220|gb|ACY52015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
          Length = 374

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 200/375 (53%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       D   +  M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVRRSF---PDNGEKPAMLRGLDGNKDQSYFLYTLSHEQIGRSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          EP FV    L++N    + G     L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 DDV----CLGGGIIE 366


>gi|330972900|gb|EGH72966.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 366

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D  ++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|317010016|gb|ADU80596.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori India7]
          Length = 342

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 203/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  + ++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNVQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + ++VG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYQDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|77459818|ref|YP_349325.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf0-1]
 gi|123604062|sp|Q3KA70|MNMA_PSEPF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77383821|gb|ABA75334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens Pf0-1]
          Length = 374

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 199/381 (52%), Gaps = 29/381 (7%)

Query: 15  DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D  P D    RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  
Sbjct: 3   DPAPSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTEY---CTAMD 59

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L 
Sbjct: 60  DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP
Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I    G+
Sbjct: 175 VGELEKPEVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           ++GRH+G++ +TIGQR+GLG+     A  EP +V+  D +++ +IVG       L    +
Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLRKDLDTNELIVGQGNNHPWLFSSAL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              EI W+        +    +   K+R  Q      +++ D G    F++ +  V  GQ
Sbjct: 293 LASEIYWVN----PIDLSQPLRLTAKVRYRQSDQACTLEKTDTGYRAVFDEPQRAVTPGQ 348

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGG+I 
Sbjct: 349 SVVFYDGEI----CLGGGVIE 365


>gi|167034615|ref|YP_001669846.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida GB-1]
 gi|189040506|sp|B0KMQ6|MNMA_PSEPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166861103|gb|ABY99510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida GB-1]
          Length = 374

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 204/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G    ++ + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGDLTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    +D     +   K+R  Q      ++  + G    F++ +  V  GQ+ VF
Sbjct: 293 LASEIFWVNPIDLSSPRQLTAKVRYRQSDQQCTLELTETGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIEAAE 368


>gi|90961839|ref|YP_535755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius UCC118]
 gi|122449023|sp|Q1WTT7|MNMA_LACS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|90821033|gb|ABD99672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius UCC118]
          Length = 375

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 25/377 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ +  S   G C   +D  D
Sbjct: 2   KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P + CN+ VKF   L     
Sbjct: 59  VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + AD +A GHY  ++L   +DG  R  + R  D  +DQ+YFL   +Q+QL  + FP+G +
Sbjct: 119 IDADYIAMGHY--AQLRRDEDG--RVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   +       A  G++V L+G++ G 
Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++NYTIGQR+GLG+       EP FV+  D  ++ ++VG     E L  + +   ++
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACV 366
           +++ D    D   D F C  K R  Q    V V+ N+D   V+  F++    +  GQ  V
Sbjct: 293 SFVDD--ISDC-GDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  +      LG G I
Sbjct: 350 FYDGE----ECLGSGTI 362


>gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 359

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY + RL    DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQIRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLREI--NW 310
           ++ YTIGQR+GLG+   +     P F    D +N+  + V   +   + +  L+ I  +W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIKLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +  G+   A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|28572507|ref|NP_789287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tropheryma whipplei TW08/27]
 gi|81629880|sp|Q83HX5|MNMA_TROW8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28410639|emb|CAD67025.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tropheryma whipplei TW08/27]
          Length = 359

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 201/382 (52%), Gaps = 41/382 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+ AMSGGVDS+V AA     G+DV+GV L L  SR AS ++G CC  +D  DA +  
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            TI +  YV+D+ E F+  VI  F S Y+AG TP PC+ CN  +KFS LL     LG D 
Sbjct: 58  QTIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199
           + TGHY  +R+++ +DG  +  + R     +DQSY L    Q QL    FPLG    K+ 
Sbjct: 118 VCTGHY--ARVFLDEDGTYQ--LHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-------EGDIVHLNGQI 252
           VR  A E GL ++ K DS D+CF+            N G  L       +GDI+   GQ 
Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSS---------NTGAWLSQRIGRRDGDIIDDLGQR 224

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI--YLR 306
           +G H G   YT+GQR+GL ++     G+P +V+ ++  S+ V+VGPRESL V  +     
Sbjct: 225 VGSHTGAFAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFT 284

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W     F    ++   C V++R+  DPV       DD + V  ++    VA GQ+  
Sbjct: 285 TTGW----CFTSRPIE---CSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAA 337

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y       RVLG  +I  +K+
Sbjct: 338 IYRG----TRVLGQLMIDNTKK 355


>gi|301301190|ref|ZP_07207346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300214575|gb|ADJ78991.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT
           5713]
 gi|300851189|gb|EFK78917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 375

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 25/377 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ +  S   G C   +D  D
Sbjct: 2   KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P + CN+ VKF   L     
Sbjct: 59  VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + AD +A GHY  ++L   +DG  R  + R  D  +DQ+YFL   +Q+QL  + FP+G +
Sbjct: 119 IDADYIAMGHY--AQLRRDEDG--RVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   +       A  G++V L+G++ G 
Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++NYTIGQR+GLG+       EP FV+  D  ++ ++VG     E L  + +   ++
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACV 366
           +++ D    D   D F C  K R  Q    V V+ N+D   V+  F++    +  GQ  V
Sbjct: 293 SFVDD--ISDR-GDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  +      LG G I
Sbjct: 350 FYDGE----ECLGSGTI 362


>gi|307287836|ref|ZP_07567872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0109]
 gi|306501170|gb|EFM70476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0109]
 gi|315164727|gb|EFU08744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1302]
          Length = 374

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|302558240|ref|ZP_07310582.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000]
 gi|302475858|gb|EFL38951.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000]
          Length = 377

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 204/393 (51%), Gaps = 28/393 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           +  + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 3   ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  +++ + +DG R   + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHY--AQVILREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247
           PLGD    KE +R  A   GL +A K DS DICF+  G     +  R+      EGDIV 
Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGRA---EGDIVD 234

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +G  +G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  +
Sbjct: 235 ESGSKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTAL 294

Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
              +  W G      A   G   +  ++R+      V  +  D  + V F +   GVA G
Sbjct: 295 SAIKPRWCG------AAPSGPGTYTAQLRAHGGETEVTAELVDGTLEVSFTEPVRGVAPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
           QA V Y    +  RV+G   I+ + R+ A   S
Sbjct: 349 QAIVLY----DGTRVVGSATIASTVRAAAATAS 377


>gi|227890864|ref|ZP_04008669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ATCC 11741]
 gi|227867273|gb|EEJ74694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ATCC 11741]
          Length = 375

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 25/377 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ +  S   G C   +D  D
Sbjct: 2   KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P + CN+ VKF   L     
Sbjct: 59  VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKDGRTPNPDIMCNKEVKFKAFLDYAMS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + AD +A GHY  ++L   +DG  R  + R  D  +DQ+YFL   +Q+QL  + FP+G +
Sbjct: 119 IDADYIAMGHY--AQLRRDEDG--RVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   +       A  G++V L+G++ G 
Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++NYTIGQR+GLG+       EP FV+  D  ++ ++VG     E L  + +   ++
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACV 366
           +++ D    D   D F C  K R  Q    V V+ N+D   V+  F++    +  GQ  V
Sbjct: 293 SFVDD--ISDR-GDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  +      LG G I
Sbjct: 350 FYDGE----ECLGSGTI 362


>gi|29376579|ref|NP_815733.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecalis V583]
 gi|227520188|ref|ZP_03950237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227555378|ref|ZP_03985425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HH22]
 gi|256762940|ref|ZP_05503520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T3]
 gi|256853584|ref|ZP_05558949.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8]
 gi|257079445|ref|ZP_05573806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis JH1]
 gi|257087270|ref|ZP_05581631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis D6]
 gi|257090346|ref|ZP_05584707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis CH188]
 gi|257419691|ref|ZP_05596685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T11]
 gi|257422150|ref|ZP_05599140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis X98]
 gi|294780347|ref|ZP_06745716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis PC1.1]
 gi|307270242|ref|ZP_07551555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4248]
 gi|307295656|ref|ZP_07575491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0411]
 gi|312900841|ref|ZP_07760135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0470]
 gi|312902847|ref|ZP_07762051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0635]
 gi|73920123|sp|Q820U1|MNMA_ENTFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29344043|gb|AAO81803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis V583]
 gi|227072360|gb|EEI10323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227175492|gb|EEI56464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HH22]
 gi|256684191|gb|EEU23886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T3]
 gi|256710527|gb|EEU25570.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8]
 gi|256987475|gb|EEU74777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis JH1]
 gi|256995300|gb|EEU82602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis D6]
 gi|256999158|gb|EEU85678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis CH188]
 gi|257161519|gb|EEU91479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T11]
 gi|257163974|gb|EEU93934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis X98]
 gi|294452611|gb|EFG21044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis PC1.1]
 gi|306496368|gb|EFM65945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0411]
 gi|306513458|gb|EFM82077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4248]
 gi|310633901|gb|EFQ17184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0635]
 gi|311291940|gb|EFQ70496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0470]
 gi|315025815|gb|EFT37747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2137]
 gi|315028590|gb|EFT40522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4000]
 gi|315031109|gb|EFT43041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0017]
 gi|315149261|gb|EFT93277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0012]
 gi|315157187|gb|EFU01204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0043]
 gi|315171619|gb|EFU15636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1342]
 gi|315173202|gb|EFU17219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1346]
 gi|315575062|gb|EFU87253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0309B]
 gi|315576621|gb|EFU88812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0630]
 gi|315582488|gb|EFU94679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0309A]
 gi|327535526|gb|AEA94360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis OG1RF]
          Length = 374

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|317182580|dbj|BAJ60364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F57]
          Length = 342

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L    +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|308274462|emb|CBX31061.1| tRNA-specific 2-thiouridylase mnmA [uncultured Desulfobacterium
           sp.]
          Length = 354

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +A+SGGVDS V A LLK  GYDV G+        +  K + S     ++    ++  
Sbjct: 4   KIAIALSGGVDSLVAAYLLKNQGYDVTGI--HFITGYEHGKVQDSGKNNPELQKITQLAK 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I ++   FD   +F+  VI  F  +Y AG+TP PC+ CN+++KF  +L   +++G   L
Sbjct: 62  QIEINIEFFDCRTQFKQIVINYFTQTYKAGKTPNPCIICNQSIKFGVVLEFAKKIGCTFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +    G DG     + +  D ++DQSYFL   +Q+QL    FPL    K+ V 
Sbjct: 122 ATGHY--AGKMTGRDGMFH--LLKGADTKKDQSYFLSMLSQKQLSCAIFPLYGFTKKEVI 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            L+ E GL  A + +SQDICF++   Y D + R       +G IV +NG+ +G H GI  
Sbjct: 178 RLSEEKGLHPAVQKESQDICFIKDNDYADFLIRETGFSPNDGIIVDINGKRIGNHKGIHQ 237

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQRRG+     EP +V+ +D +++ V+VG +  L         INW+      +   
Sbjct: 238 FTVGQRRGINCPAPEPYYVISIDADANSVVVGSKNDLLTKHCKAANINWIAKSYTTE--- 294

Query: 322 DGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K   +IR     VP V      +   ++FE  +  V  GQ  VFY  D     V+GG
Sbjct: 295 --LKVCTRIRYRNKEVPSVLFPEPGNCATIEFESPQSAVTPGQCAVFYIGD----EVIGG 348

Query: 381 GIISGS 386
           G I  +
Sbjct: 349 GFIENA 354


>gi|300933640|ref|ZP_07148896.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium resistens DSM
           45100]
          Length = 374

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 196/391 (50%), Gaps = 46/391 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V A+     G+DV+GV L L  S +A  R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSAVAASRALEAGHDVVGVHLALSQSPEAV-RAGSRGCCSLEDSADARRVADKLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ +RF+  VI  F  SY+ GETP PC+ CN  +KF  LL  +  LG D +ATG
Sbjct: 60  IPFYVWDFSDRFKADVIDNFVDSYSIGETPNPCLRCNEKIKFEALLDRSIALGFDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY  +RL+ G       ++ R +D  +DQSY L   T +QL    FP+GD  K  +R+ A
Sbjct: 120 HY--ARLHDG-------VLRRGIDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPDIREEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263
            E G  +A K DS DICF+  G+       +   I L   +V    G+ L  H+G+  +T
Sbjct: 171 AENGFGVASKPDSHDICFIPDGR---TQAFLGNKIGLRPGMVQSTGGEKLADHDGVYGFT 227

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR+GLG+      G+P +V  +D  +  V VG R  L +  I    +  L      D 
Sbjct: 228 IGQRKGLGLPREGLDGKPRYVTDIDAATGTVTVGHRRDLRIGGIVADRLKRL------DP 281

Query: 320 VVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDF---EKSE---------------VGV 359
            V G  F C V++R+    VP   +  DD   V      K E                GV
Sbjct: 282 EVHGREFDCEVQVRAHGGVVPAVARLVDDPEPVTPAGRNKHEDEAPFRLELELAEPLEGV 341

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
           A GQA V Y  D     +LG G I  +   D
Sbjct: 342 ARGQAAVVYRPDEAGDILLGSGTIRATTPWD 372


>gi|269957192|ref|YP_003326981.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305873|gb|ACZ31423.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 400

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 147/397 (37%), Positives = 210/397 (52%), Gaps = 40/397 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AAL    G+DV+GV + L  +R    R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVEAGHDVVGVHMALSRNRD-QFRTGSRGCCSIEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + +YV+D  ERF + V+  F + Y AG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADVLGIPYYVWDLSERFEDTVVADFLAEYEAGRTPNPCVRCNEHIKFETLLEKATALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D +ATGHY  +R+    DG R   + R  + E+DQSY L     ++L    FPLG    K
Sbjct: 120 DAVATGHY--ARVVERPDGTRE--LHRSPNTEKDQSYVLAVMGPERLARAIFPLGGFASK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRH 256
             VR  A   GL ++ K DS DICFV  G     ++ R+    +  G++V  +G ++G H
Sbjct: 176 AEVRAEAARRGLAVSAKPDSYDICFVADGDTRGFLRDRLG---SRPGEVVDTSGAVVGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   YT+GQR+GL +    A G+P +V+ +  ++++V+VGP E L V RI      W  
Sbjct: 233 DGAYAYTVGQRKGLALGRPAADGKPRYVLDVRTSTNQVVVGPAELLTVDRIAGDRAVWFT 292

Query: 313 D-----------GL-FEDAVVDGFKCF------VKIRSSQDPVPV-FVQRNDDGVYVDFE 353
           D           GL   D  V G          +++R+   PVP   +   D GV V+  
Sbjct: 293 DPAPGPRASRDVGLPTPDTDVPGRPSSPVDDVEIQVRAHGTPVPARILDAADGGVEVELT 352

Query: 354 KSEV-GVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
            + + GVA+GQ+ V Y       +VLG   ++ + R+
Sbjct: 353 GTPLRGVAAGQSLVVYRG----TQVLGQATVTRAWRA 385


>gi|218891213|ref|YP_002440079.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa LESB58]
 gi|226704774|sp|B7UV15|MNMA_PSEA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218771438|emb|CAW27205.1| tRNA methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 204/387 (52%), Gaps = 36/387 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P+  RV+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ DA
Sbjct: 7   TPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 64  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 124 GADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI  + G+++GRH
Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETIEGKVIGRH 236

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303
           +G++ +TIGQR+GLG+     A  +P +V+  D   + ++VG           +L   RI
Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           Y     W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ
Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390
           + VFY  D      LGGG+I  ++  D
Sbjct: 348 SVVFYDGDV----CLGGGVIETAEAWD 370


>gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 197/381 (51%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y AG TP P + CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA GHY ++   V ++G     M RP D  +DQ+YFL   TQ+Q+  + FPL D+ K  V
Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G+H G++
Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGQHAGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   +++IV   +  +  R+Y   +   G   F
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295

Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369
                ED     FK   K R  Q  V V V+ +      D  F++    V  GQA V Y 
Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              N    LGGG I  + + D
Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369


>gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|123077302|sp|Q1GAS1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 196/381 (51%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y AG TP P + CN  VKF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA GHY ++   V ++G     M RP D  +DQ+YFL   TQ+Q+  + FPL D+ K  V
Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H G++
Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   +++IV   +  +  R+Y   +   G   F
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295

Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369
                ED     FK   K R  Q  V V V+ +      D  F++    V  GQA V Y 
Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              N    LGGG I  + + D
Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369


>gi|152989329|ref|YP_001347945.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PA7]
 gi|205816889|sp|A6V4G0|MNMA_PSEA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150964487|gb|ABR86512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa PA7]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 204/387 (52%), Gaps = 36/387 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P+  RV+V MSGGVDSSV A LL++ GY V G+ ++ ++    ++    C A +D+ DA
Sbjct: 7   TPRRERVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 64  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 124 GADLIATGHYVRRR-----DLDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GRH
Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRH 236

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303
           +G++ +TIGQR+GLG+     A  +P +V+  D   + ++VG           +L   RI
Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           Y     W+     E       +   K+R  Q      +++  DG    F++ +  V  GQ
Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTADGYRAVFDEPQRAVTPGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390
           + VFY  +      LGGG+I  ++  D
Sbjct: 348 SVVFYDGEV----CLGGGVIETAEAWD 370


>gi|255975449|ref|ZP_05426035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T2]
 gi|256961498|ref|ZP_05565669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Merz96]
 gi|293385188|ref|ZP_06631008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis R712]
 gi|293388180|ref|ZP_06632702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis S613]
 gi|307277736|ref|ZP_07558822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0860]
 gi|312908274|ref|ZP_07767238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 512]
 gi|312910654|ref|ZP_07769495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 516]
 gi|255968321|gb|EET98943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T2]
 gi|256951994|gb|EEU68626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Merz96]
 gi|291077561|gb|EFE14925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis R712]
 gi|291082420|gb|EFE19383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis S613]
 gi|306505615|gb|EFM74799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0860]
 gi|310625688|gb|EFQ08971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 512]
 gi|311289030|gb|EFQ67586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 516]
          Length = 374

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQTQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|330958166|gb|EGH58426.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 366

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 194/370 (52%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D      + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DTDGHTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D  ++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLQNNELIVGQGNDHPWLFSSALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRRLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGII 383
               LGGG+I
Sbjct: 348 ---CLGGGVI 354


>gi|326803425|ref|YP_004321243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651703|gb|AEA01886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 374

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 197/381 (51%), Gaps = 26/381 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +VV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D + 
Sbjct: 5   KNKKVVLGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYRDVQA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F   Y    TP P V CN+ +KF   L     LGA
Sbjct: 62  VASQIGIPYYSVNFEKEYWDRVFEYFLDEYRHDRTPNPDVMCNKEIKFKAFLDYALDLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R R    D G+    + R +D  +DQ+YFL   +Q+QL    FP+G+++K 
Sbjct: 122 DYVAMGHYARVR--TNDQGEVE--LLRGVDSNKDQTYFLNQLSQEQLQHALFPIGELEKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A +  L  A K DS  +CF+ +  +   +   N  +A  G +  L+GQ++  H+G
Sbjct: 178 EVRKIAEDHNLKTAHKKDSTGVCFIGERDFNAFLS--NYLLAKPGLMKTLDGQVMAEHHG 235

Query: 259 IINYTIGQRRGLG-----VAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG     V   EP FV+  ++  + + VG       L    +   E+++
Sbjct: 236 LMYYTIGQRKGLGIGGTKVGNNEPWFVIGKNQAKNELYVGQGYHHPLLYADYLLASEVSF 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
             D        + F C  K R  Q  +PV V   +DD + VDFE+    +  GQ+ VFY 
Sbjct: 296 TSDHF----PPEDFTCTAKFRYRQKDIPVKVSFLSDDHLRVDFEEPVRAITPGQSVVFYK 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
            +      LGG  I  + + D
Sbjct: 352 DEV----CLGGATIDAAYKDD 368


>gi|268319690|ref|YP_003293346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii FI9785]
 gi|262398065|emb|CAX67079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii FI9785]
          Length = 375

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L     L AD 
Sbjct: 64  DEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY  +R  V D+G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  V
Sbjct: 124 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 180 REIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   F
Sbjct: 238 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--DQGYDSKLLYATSLDASGVSFF 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  VD  KC  K R  Q  V V +     D+ V+V+F++    V  GQA VFY   
Sbjct: 296 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 351

Query: 372 SNEARVLGGGII 383
            N    LGG  I
Sbjct: 352 -NGEECLGGATI 362


>gi|238789081|ref|ZP_04632870.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
           33641]
 gi|238722845|gb|EEQ14496.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
           33641]
          Length = 373

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 201/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQPMGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        +P +V   D  N+  V+    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVADKDVANNILVVAQGHEHPRLMSVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                + V + F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ VFY  +
Sbjct: 298 ----REPVTEAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQGE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 V----CLGGGIIE 362


>gi|269120194|ref|YP_003308371.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
 gi|268614072|gb|ACZ08440.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
          Length = 359

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GY+VIGV ++ ++    +   G C A +D  D   V +
Sbjct: 4   RVVLGMSGGVDSSVAAILLKEQGYEVIGVFMKNWDE---TDENGVCPADEDYKDVIAVAE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            ++V +Y  ++ + + + V   F   Y AG TP P V CN+ +KF   L    ++GAD +
Sbjct: 61  QLDVPYYSVNFVKEYWDRVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLDYAVKIGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D GK R  + R +D  +DQ+YFL   +Q+QL  + FP+G+  K+ +R
Sbjct: 121 ATGHYARIER---DSGKVR--LLRGLDDNKDQTYFLCQLSQEQLDKVIFPIGEYNKKDIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +  L  A K DS  ICF+ +  + + + R     A  G IV  +G+ LG H G+++
Sbjct: 176 AIAEKYNLKTAKKKDSTGICFIGERDFAEFLNRYLP--AKPGKIVTADGENLGNHVGLMH 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YTIGQR+G+G+       GEP FV   D   + +IV   G  E L    +     N++  
Sbjct: 234 YTIGQRKGIGIGNTKDGSGEPWFVADKDLEKNELIVVQGGDHEKLYSKALIADNFNFINK 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                      KC  K R  Q  V V V++   D   V F+K E  V  GQ  V Y ++ 
Sbjct: 294 RELP------LKCTAKFRYRQKDVGVTVEKAGTDSYRVTFDKPEKAVTLGQIVVLYDNEE 347

Query: 373 NEARVLGGGIIS 384
                LGGGII 
Sbjct: 348 ----CLGGGIIK 355


>gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 375

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 196/381 (51%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y AG TP P + CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA GHY ++   V ++G     M RP D  +DQ+YFL   TQ+Q+  + FPL D+ K  V
Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H G++
Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   +++IV   +  +  R+Y   +   G   F
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295

Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369
                ED     FK   K R  Q  V V V+ +      D  F++    V  GQA V Y 
Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              N    LGGG I  + + D
Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369


>gi|256619544|ref|ZP_05476390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 4200]
 gi|307276004|ref|ZP_07557137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2134]
 gi|256599071|gb|EEU18247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 4200]
 gi|295113315|emb|CBL31952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus sp. 7L76]
 gi|306507334|gb|EFM76471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2134]
          Length = 374

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|328947275|ref|YP_004364612.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM
           2489]
 gi|328447599|gb|AEB13315.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM
           2489]
          Length = 406

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 142/410 (34%), Positives = 207/410 (50%), Gaps = 46/410 (11%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-----NSRKASKRKGSC 67
           +L+   K  RVVV +SGGVDS++ A LLK  G DV  VT+ L+     N     K   SC
Sbjct: 10  ELELPKKGDRVVVGLSGGVDSTMTAMLLKEKGCDVTCVTMSLWQEADLNLPDDYKIPDSC 69

Query: 68  CAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
            + ++V D    R+ C    + + V D +E+++  VI  F   Y  G TP PC+ CNR +
Sbjct: 70  YSPKEVEDIEENRKFCAEQGIPYVVVDVKEKYQQEVIEYFKREYRNGRTPNPCIRCNRFI 129

Query: 125 KFSDLLSVTRQLGA--DVLATGHYIRS--------RLYVGDDGKRRRIMCRP------MD 168
           KF  +LS  + LG   D   TGHY ++         +Y  +  K  R  CRP      +D
Sbjct: 130 KFGAMLSGLKDLGIEYDYFCTGHYAKAVRGTEPLFLVYGENASKDERGKCRPVQIHTALD 189

Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228
           + +DQ+YFL+      L  +RFPL    K+ +  +ARE GL  A+K +SQD       +Y
Sbjct: 190 ITKDQAYFLYRIPSAILEKVRFPLASFSKKEIFKMARERGLKAAEKEESQDFIPAPMLEY 249

Query: 229 FDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
                      ++ GD + L+G++LGRH GI +YTIGQRRGLGV+   PL+V  +DK  +
Sbjct: 250 M-----FKDKPSVPGDFIDLDGKVLGRHKGIEHYTIGQRRGLGVSAPYPLYVAEIDKEKN 304

Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQR 343
            V++G    L    +   ++ W  D    D   + F   VKIR +  P     VP     
Sbjct: 305 LVVLGKDSDLFCSGLIADDLVWPAD---YDPCCE-FDAMVKIRLASKPVKAHVVPYQPLE 360

Query: 344 NDD----GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
           N++       V F++ +  VA GQ+ VFY     +   LGGGIIS + ++
Sbjct: 361 NEEFCGKSYKVVFDEPQRAVAPGQSIVFY----KDGITLGGGIISKAIKA 406


>gi|253583302|ref|ZP_04860500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
 gi|251833874|gb|EES62437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
          Length = 346

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 193/366 (52%), Gaps = 27/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK +GY VIGVTL   N +K    K    A Q      R+C 
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKSEGYGVIGVTL---NHKKEESLKDEIKAAQ------RICH 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H + D EE F+  VI  F   Y+ G TP PCV C+  VK   L  +  +  AD +
Sbjct: 56  FLGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDEKVKMKILFEIADKENADFV 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  S +   ++ K   ++    D  +DQSY L+     ++  L FPL   +K+ +R
Sbjct: 116 ATGHY--SSVEYSEEFK-TSLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQIR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           D+A+ +GL++ +K DSQ ICF ++G Y + +KR       +G  +  NG+ILG H G   
Sbjct: 173 DIAKNIGLEVYNKKDSQGICFAKEG-YIEFLKRNLGNKIKKGKYIDKNGKILGEHEGYQL 231

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW---LGDGLFED 318
           YTIGQRRGLG+ +    F+  +DK  + + +G  E L   R+ L++      + D L ++
Sbjct: 232 YTIGQRRGLGLKLPRAYFITKIDKEKNEITIGEYEELYKKRVELKKYKLAVKITDILNKN 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +  G   F    +S       V   ++ ++ +F++     A GQ  V Y  +     VL
Sbjct: 292 II--GRPRFSSFGTSGK-----VLFENEKLFFEFDEETPQTAPGQHLVLYYKN----LVL 340

Query: 379 GGGIIS 384
           GGGIIS
Sbjct: 341 GGGIIS 346


>gi|154496175|ref|ZP_02034871.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC
           29799]
 gi|150274730|gb|EDN01794.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC
           29799]
          Length = 342

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 191/369 (51%), Gaps = 29/369 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDS+V A LL RD Y+V G+ L +          G    GQ   DA  V   +
Sbjct: 1   MLGLSGGVDSAVAAQLLSRD-YEVHGLYLDI----------GLGGTGQ--ADAAAVAHRL 47

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++  +  D  +   N V  PFA+ Y AG TPLPC  CN TVKF  LL++  ++GA+ +AT
Sbjct: 48  DIPFHTADIRQELENQVCGPFAADYLAGRTPLPCARCNPTVKFPALLALAEEIGAEKVAT 107

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R+ L    DG   R++ R      DQSY L    Q  L  + FPLGD +K +VR +
Sbjct: 108 GHYARTAL--APDG---RVLLRKGLPANDQSYMLSRLPQNILQKVIFPLGDYEKTAVRAM 162

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A +  L +ADK DS +ICF+  G Y   ++     +   GD V  +G++LGRH GI  YT
Sbjct: 163 AGQAELPVADKPDSMEICFIPDGDYAAWLEH-RGTVPPAGDFVDRDGRVLGRHGGIHRYT 221

Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDAVVD 322
           +GQ RGLGV+     +V  +D    RV++     L   R+Y  ++NWL  DGL E     
Sbjct: 222 LGQGRGLGVSGPHKYYVTEIDPAHDRVVLSDGSDLMARRVYCADMNWLSVDGLPEP---- 277

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
             +  V++R S+  +    + + + V ++          GQ  V Y  D     V   G 
Sbjct: 278 -LEVTVRLRHSKTELAAVARADGENVVLEMLDPARAPTPGQLAVLYQGDI----VAASGW 332

Query: 383 ISGSKRSDA 391
           I+G++R+ A
Sbjct: 333 ITGAERTAA 341


>gi|153950153|ref|YP_001400589.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
           31758]
 gi|205828987|sp|A7FH61|MNMA_YERP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152961648|gb|ABS49109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis IP 31758]
          Length = 371

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ++G+H G++
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGKHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGP-RESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        +P +VV  D +S+ ++V    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ VFY  +
Sbjct: 298 ----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAVFYQGE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 I----CLGGGIIE 362


>gi|148269543|ref|YP_001244003.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga petrophila RKU-1]
 gi|166235088|sp|A5IJQ4|MNMA_THEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147735087|gb|ABQ46427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga petrophila RKU-1]
          Length = 358

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 191/370 (51%), Gaps = 22/370 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDA 76
           M+V VA+SGGVDS+V   LL ++G++V    ++     +  RK  K+K  CC+  D  DA
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKK-VCCSPSDTADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R+   + V   + D +E FR  VI PF S    G TP PCV CNR VKF  L+      
Sbjct: 60  MRIAHFLGVEIEIVDVKEIFREKVIEPFKSDLLKGLTPNPCVHCNRFVKFGYLMDYVLNQ 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D  A+GHY R       +   R+++ + +DL++DQSYFL      ++  L FP G   
Sbjct: 120 GFDAFASGHYARIEF---SEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYT 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGR 255
           KE +R +A E G+ +A K +SQD+CF+  G   + +K  + GI L EGD++   G+++GR
Sbjct: 177 KEEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLKEGDLITPEGEVVGR 234

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G   YTIGQR+G  +   G   +V       + V+V   E +    +   +  W  + 
Sbjct: 235 HFGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE- 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                V + FKC  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+  
Sbjct: 294 -----VPEEFKCVCRVRKKSEEAPAVVKLRDNEVEVRFEKKVFAVTPGQIAAFYDGDT-- 346

Query: 375 ARVLGGGIIS 384
             +LGG II 
Sbjct: 347 --LLGGAIIK 354


>gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Dichelobacter nodosus VCS1703A]
 gi|205816915|sp|A5EVB4|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Dichelobacter nodosus VCS1703A]
          Length = 376

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 207/378 (54%), Gaps = 26/378 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + P+   + V MSGGVDSSV A LLK+ GYDV G+ ++ +    +S   G C A +D+ D
Sbjct: 7   QAPQGSTIAVGMSGGVDSSVTAYLLKKQGYDVFGIFMKNWEETFSS---GYCSAAEDLED 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR VC T+++  +  ++ +++ + V   F   Y AG TP P V CNR +KF++L    +Q
Sbjct: 64  ARDVCQTLDIPLHTVNFVQQYHDRVFQLFLDEYRAGRTPNPDVLCNREIKFAELALYAQQ 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY + RL           + + +D ++DQSYFL   T  QL    FPLG +
Sbjct: 124 LGADFLATGHYAQ-RL---QSDNHEAALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGL 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR +ARE GL   DK DS  ICF+ +  +   +++     A +G +   NG+I+G 
Sbjct: 180 QKKQVRAIARERGLTTFDKKDSTGICFIGERPFRAFLQQYLP--AQKGLMKTPNGEIVGE 237

Query: 256 HNGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRES-LEVHRIYLR-EI 308
           H G++ YTIGQR+GLG+        EP +V+  D +++ +IVG  +  L  HR+ +  ++
Sbjct: 238 HMGLMYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLIAGQL 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           +WL      +A + G     K R  Q      V    DG + + FE+ +  +  GQ  V 
Sbjct: 298 SWL-----NEAPIAGRFYHAKTRYRQSDQKCRVDYAADGRLQLTFEQLQRAITLGQYAVI 352

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  +    R LGGG+I  
Sbjct: 353 YDGE----RCLGGGVIEA 366


>gi|194429520|ref|ZP_03062041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B171]
 gi|194412394|gb|EDX28695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B171]
 gi|323163677|gb|EFZ49499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E128010]
          Length = 368

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTATADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|330900616|gb|EGH32035.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 366

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+  
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 +    +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +  
Sbjct: 292 ---PIDLSSPRRLTAKVRYRQGDQPCTLEKAADGYRATFDDPQRAVTPGQSVVFYDGEI- 347

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 348 ---CLGGGVIE 355


>gi|302554308|ref|ZP_07306650.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736]
 gi|302471926|gb|EFL35019.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736]
          Length = 376

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 201/389 (51%), Gaps = 28/389 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           D  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 3   DTPQRSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  +++ V +DG R   + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHY--AQVIVHEDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247
           PLGD    K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV 
Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGKA---EGDIVD 234

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +G  LG H G   +TIGQR+GL +      G+P +V+ +    + V VGP  +L+V  +
Sbjct: 235 ESGAKLGTHEGAFGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPASALDVSAL 294

Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
              +  W G          G   +  ++R+      V  +  D  + V F +   GVA G
Sbjct: 295 TAVKPRWCG------VAPTGPGTYTAQLRAHGGETEVTAELVDGSLEVTFSEPVRGVAPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDA 391
           QA V Y    +  RV+G   I+ +KR+ A
Sbjct: 349 QAIVLY----DGTRVVGSATIASTKRTPA 373


>gi|22125693|ref|NP_669116.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis KIM 10]
 gi|45441579|ref|NP_993118.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51596752|ref|YP_070943.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
           32953]
 gi|108807881|ref|YP_651797.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Antiqua]
 gi|108812155|ref|YP_647922.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Nepal516]
 gi|145599092|ref|YP_001163168.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Pestoides F]
 gi|149366398|ref|ZP_01888432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162421419|ref|YP_001607233.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Angola]
 gi|165925423|ref|ZP_02221255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938528|ref|ZP_02227085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008070|ref|ZP_02228968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211105|ref|ZP_02237140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401703|ref|ZP_02307194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421866|ref|ZP_02313619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426312|ref|ZP_02318065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470788|ref|ZP_02335492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis FV-1]
 gi|170023961|ref|YP_001720466.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895819|ref|YP_001872931.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928774|ref|YP_002346649.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92]
 gi|229841625|ref|ZP_04461783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843742|ref|ZP_04463885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229894486|ref|ZP_04509668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides A]
 gi|229902476|ref|ZP_04517595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|270490345|ref|ZP_06207419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis KIM D27]
 gi|294504164|ref|YP_003568226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Z176003]
 gi|24638321|sp|Q8ZFQ5|MNMA_YERPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73920130|sp|Q669Q4|MNMA_YERPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122980130|sp|Q1CI58|MNMA_YERPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123245748|sp|Q1C6S0|MNMA_YERPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828988|sp|B2K711|MNMA_YERPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828989|sp|A9R0L5|MNMA_YERPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828990|sp|A4TLN3|MNMA_YERPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828991|sp|B1JI67|MNMA_YERPY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21958608|gb|AAM85367.1|AE013782_8 hypothetical protein y1799 [Yersinia pestis KIM 10]
 gi|45436440|gb|AAS61995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51590034|emb|CAH21668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis IP 32953]
 gi|108775803|gb|ABG18322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|108779794|gb|ABG13852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Antiqua]
 gi|115347385|emb|CAL20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CO92]
 gi|145210788|gb|ABP40195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides F]
 gi|149290772|gb|EDM40847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162354234|gb|ABX88182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Angola]
 gi|165913643|gb|EDR32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922532|gb|EDR39683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992452|gb|EDR44753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208285|gb|EDR52765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960351|gb|EDR56372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048808|gb|EDR60216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054667|gb|EDR64471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750495|gb|ACA68013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis YPIII]
 gi|186698845|gb|ACC89474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis PB1/+]
 gi|229680522|gb|EEO76619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|229689350|gb|EEO81413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694088|gb|EEO84136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703505|gb|EEO90522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides A]
 gi|262362281|gb|ACY59002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis D106004]
 gi|262366214|gb|ACY62771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis D182038]
 gi|270338849|gb|EFA49626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis KIM D27]
 gi|294354623|gb|ADE64964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Z176003]
 gi|320014781|gb|ADV98352.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 371

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ++G+H G++
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGKHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGP-RESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        +P +VV  D +S+ ++V    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ VFY  +
Sbjct: 298 ----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAVFYQGE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 I----CLGGGIIE 362


>gi|295396917|ref|ZP_06807041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus viridans ATCC 11563]
 gi|294974851|gb|EFG50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus viridans ATCC 11563]
          Length = 378

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 26/390 (6%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ NP K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D
Sbjct: 2   VENNPNKNTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGFCTATED 58

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D   V   I + +Y  ++E+ + + V   F   Y    TP P V CN+ +KF   L  
Sbjct: 59  YKDVAAVAAQIGIPYYSINFEKEYWDKVFTYFLDEYKRDRTPNPDVMCNKEIKFKAFLDY 118

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LGAD +ATGHY +    V  D K +  M R +D  +DQ+YFL   +Q QL  + FPL
Sbjct: 119 ALELGADYVATGHYAQ----VERDAKGKVHMLRGLDNNKDQTYFLNQLSQDQLQRVMFPL 174

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G ++K  VR +A E GL  A K DS  ICF+ +  + + +   N   A  G ++  +G +
Sbjct: 175 GHLEKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NFLPAQPGKMIAEDGTV 232

Query: 253 LGRHNGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +G H G++ YTIGQR+GLG+  G    +P FVV  D+  + + VG     + L    +  
Sbjct: 233 MGDHMGLMYYTIGQRKGLGIGGGGESDQPWFVVGKDQAKNVLYVGQGFHNDKLYADYLMA 292

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQA 364
            +++++ D    +     F C  K R  Q    V V  N+DG   + F +    +  GQA
Sbjct: 293 SDLSFVDD----EFTATSFDCTAKFRYRQKDTQVHVDINEDGTAKITFAEPVRAITPGQA 348

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
            VFY         LGGG I  + ++  V E
Sbjct: 349 VVFYDG----PECLGGGTIDAAFKNSEVAE 374


>gi|88855226|ref|ZP_01129891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine actinobacterium PHSC20C1]
 gi|88815754|gb|EAR25611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine actinobacterium PHSC20C1]
          Length = 375

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 199/372 (53%), Gaps = 35/372 (9%)

Query: 31  VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88
           +DS+V AA     G++V+GV L L + +  + R G+  CC  +D  DA+R  + I + +Y
Sbjct: 1   MDSAVAAARAVEAGHEVVGVHLAL-SRQPGTLRTGARGCCTIEDSMDAQRAANIIGIPYY 59

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148
           V+D+ ERF+  V+  F + Y+AG TP PC+ CN  +KF+ LL     LG D +ATGHY  
Sbjct: 60  VWDFSERFKLDVVDDFIAEYSAGRTPNPCMRCNERIKFAALLEKAVALGFDAVATGHYAN 119

Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREM 207
               + +D    R + R     +DQSY L   T +QL    FPLG    K+ VR  A E 
Sbjct: 120 ----IVEDENGNRELHRAAAWAKDQSYVLGVLTTEQLAHSMFPLGATPSKDEVRAEAAER 175

Query: 208 GLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           G  +A+K DS DICF+  G     +  ++    A +G+I+  +G +LG+H G + +TIGQ
Sbjct: 176 GFSVANKPDSHDICFIPDGNTRGWLADKVG---AEQGEILDRSGDVLGKHEGALAFTIGQ 232

Query: 267 RRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV- 321
           R+GL V      G+P FV+ +   +++V+VGPRE+L +  I   + +W G       ++ 
Sbjct: 233 RKGLNVGYPTDDGKPRFVLEIRPKTNQVVVGPREALALAEIAGDKYSWAGLDPLASGLIS 292

Query: 322 ---DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK--SEV---------GVASGQACVF 367
              + F+C V++R+  DP+P   Q    GV  D  +  SE+         GV+ GQ  V 
Sbjct: 293 QPGESFECHVQVRAHSDPMPAVAQVTVAGVDADGNELVSELIVTPNEPLNGVSPGQTAVL 352

Query: 368 YTSDSNEARVLG 379
           Y       RVLG
Sbjct: 353 YVG----TRVLG 360


>gi|317181057|dbj|BAJ58843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F32]
          Length = 342

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 201/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D
Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++      + F+K R    P    V   D+ + V+FE+    VA GQA V Y  D  
Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAHVSLRDEMIEVEFEEPFYAVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|229545347|ref|ZP_04434072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1322]
 gi|257084787|ref|ZP_05579148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Fly1]
 gi|229309554|gb|EEN75541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1322]
 gi|256992817|gb|EEU80119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Fly1]
          Length = 374

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 198/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V   G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEEGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|90415927|ref|ZP_01223860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2207]
 gi|90332301|gb|EAS47498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2207]
          Length = 370

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 27/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL   GY V G+ ++ ++    ++    C A  D+ DA++VCD
Sbjct: 6   KVIVGMSGGVDSSVAALLLMEQGYSVEGLFMKNWDEDDETEY---CTAKADLADAQQVCD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  ++   + + V   F   Y AG TP P + CNR +KF   L   + LGAD +
Sbjct: 63  KLGITLHTANFAADYWDNVFEHFLEEYRAGRTPNPDILCNREIKFKVFLDYAQILGADAI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DG+ R  + + +D  +DQSYFL A  Q       FP+G+++K  VR
Sbjct: 123 ATGHYTR---LAEVDGQTR--LLKGLDGNKDQSYFLHAVEQSAFAKSLFPVGELEKPEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E G   + K DS  ICF+ + ++ D +++     A  G++V   G ++G+H G++ 
Sbjct: 178 RIAEEHGFVTSTKKDSTGICFIGERRFKDFLEQYIP--AQPGEMVTPEGVVIGQHQGLMF 235

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+     +  EP F +  D  ++R++VG       L   ++    INW+  
Sbjct: 236 YTIGQRQGLGIGGVKNSPDEPWFTLQKDLANNRLVVGQGAQHPLLFTDQLRAEGINWI-- 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                     F+C  K R  Q      V     G  V F+  +  +  GQ+ VFY +D  
Sbjct: 294 ---NGTPSSSFRCMAKARYRQPDQECLVTPTATGCEVLFDTPQRAITPGQSVVFYRAD-- 348

Query: 374 EARVLGGGIISGS 386
               LGGGII  +
Sbjct: 349 --HCLGGGIIEAT 359


>gi|254241058|ref|ZP_04934380.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
 gi|126194436|gb|EAZ58499.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
          Length = 375

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 203/387 (52%), Gaps = 36/387 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P+  RV+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ DA
Sbjct: 7   TPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 64  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 124 GADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GRH
Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRH 236

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303
           +G++ +TIGQR+GLG+     A  +P +V+  D   + ++VG           +L   RI
Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           Y     W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ
Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTTEGYRAVFDEPQRAVTPGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390
           + VFY  D      LGGG+I  ++  D
Sbjct: 348 SVVFYDGDV----CLGGGVIETAEAWD 370


>gi|109946881|ref|YP_664109.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter acinonychis str.
           Sheeba]
 gi|122973425|sp|Q17Z16|MNMA_HELAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109714102|emb|CAJ99110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 342

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYNLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++ V   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSVVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R      ++  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARI-----EENDKVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGKIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVRIDAKKNELVVGKKEDLATHFLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P   FV   D+ + V+ ++   GVA GQA V Y  D  
Sbjct: 283 --FKSG-----EYFIKARYRSMPTKAFVSLKDEMIEVELKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              VLGGG+I
Sbjct: 335 ---VLGGGVI 341


>gi|269127770|ref|YP_003301140.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermomonospora curvata DSM 43183]
 gi|268312728|gb|ACY99102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermomonospora curvata DSM 43183]
          Length = 358

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 200/379 (52%), Gaps = 31/379 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           +RV+ AMSGGVDS+V AA +   G+DV GV + L ++   S R G+  CC  +D  DARR
Sbjct: 3   LRVLAAMSGGVDSAVAAARVAEAGHDVTGVHMAL-SANPRSYRTGARGCCTLEDARDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERF   V+  F S YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 62  AADVIGIPFYVWDLAERFDRDVVADFVSEYAAGRTPNPCLRCNEKIKFAALLDRALALGF 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R      ++G    ++ R +D  +DQSY L   T +QL    FPLGD  K 
Sbjct: 122 DAVCTGHYARW-----ENG----VLRRGVDTAKDQSYVLAVCTPEQLAHAIFPLGDTTKA 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            +R  A   GL +ADK DS DICF+  G  + F + +R+       G IV   GQ++G H
Sbjct: 173 EIRREAERRGLAVADKPDSHDICFIADGDTRAF-LAERLGTA---PGPIVDETGQVVGEH 228

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YTIGQRRGL +      G P +V+ +   ++ V VGPRE+L+VH I      WL 
Sbjct: 229 QGAYAYTIGQRRGLRLGRPAPDGRPRYVLDISPATNTVTVGPREALDVHEIVGERPVWLA 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +C V++R+  +      + + D V +   +   GVA GQA V Y  D 
Sbjct: 289 -----PPPAGPHECQVQLRAHGEVYDCTAEADGDRVRIRLHEPARGVARGQAAVLYDGD- 342

Query: 373 NEARVLGGGIISGSKRSDA 391
              RV+G   I+ + R  A
Sbjct: 343 ---RVIGSSTIALTSRVPA 358


>gi|315185969|gb|EFU19733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6578]
          Length = 376

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 185/363 (50%), Gaps = 15/363 (4%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+    +  R+VVAMSGGVDSSV A LL   G +V+G+T    N+      +G     ++
Sbjct: 13  DIRDTRRPRRLVVAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDHEGFS---EE 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              AR V   + + H+V +  + + + V+      Y +G TP PCV CNRT+KF  L+  
Sbjct: 70  ARAAREVASHLGIEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRY 129

Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            R+ L AD +ATGHY  +R+YV  +G     + R     ++QSYFL  T  + L    FP
Sbjct: 130 AREVLRADGIATGHY--ARIYVDAEGCVH--LLRGKAGTKEQSYFLAQTRPEDLRHAYFP 185

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF-DVVKRINAGIALEGDIVHLNG 250
           LGD  K  +R  AR  G+  A++ +SQD+CF   G  F + ++         G I+   G
Sbjct: 186 LGDQTKNEIRTYARHHGIPTAERPESQDVCFNTTGLRFGEFLQEFFEEGGESGPILDERG 245

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-IN 309
            +LGRH GI  +TIGQRRGLGVA+G P++V  +D   + VIV  RE   +HR+     +N
Sbjct: 246 NVLGRHRGIHVFTIGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEALLHRVVEAAGVN 305

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W     F        +   +IR +    P  +    D + V F + +  V  GQ  V Y 
Sbjct: 306 W-----FAPPPPRPMEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQRAVTPGQLLVAYV 360

Query: 370 SDS 372
            D 
Sbjct: 361 GDE 363


>gi|229549592|ref|ZP_04438317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255972288|ref|ZP_05422874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T1]
 gi|256956522|ref|ZP_05560693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DS5]
 gi|256963413|ref|ZP_05567584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HIP11704]
 gi|300860987|ref|ZP_07107074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TUSoD Ef11]
 gi|307272736|ref|ZP_07553983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0855]
 gi|312951194|ref|ZP_07770097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0102]
 gi|229305257|gb|EEN71253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255963306|gb|EET95782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T1]
 gi|256947018|gb|EEU63650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DS5]
 gi|256953909|gb|EEU70541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HIP11704]
 gi|300850026|gb|EFK77776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TUSoD Ef11]
 gi|306510350|gb|EFM79373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0855]
 gi|310630859|gb|EFQ14142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0102]
 gi|315034636|gb|EFT46568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0027]
 gi|315143340|gb|EFT87356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2141]
 gi|315152679|gb|EFT96695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0031]
 gi|315159473|gb|EFU03490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0312]
 gi|315161320|gb|EFU05337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0645]
 gi|323481203|gb|ADX80642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis 62]
          Length = 374

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIADRAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|257082170|ref|ZP_05576531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis E1Sol]
 gi|256990200|gb|EEU77502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis E1Sol]
          Length = 374

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAIQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 375

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/381 (36%), Positives = 196/381 (51%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y AG TP P + CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALALDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA GHY ++   V ++G     M RP D  +DQ+YFL   TQ+Q+  + FPL D+ K  V
Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H G++
Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   +++IV   +  +  R+Y   +   G   F
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295

Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369
                ED     FK   K R  Q  V V V+ +      D  F++    V  GQA V Y 
Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              N    LGGG I  + + D
Sbjct: 352 ---NGEECLGGGNIDDAFKDD 369


>gi|251793304|ref|YP_003008032.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534699|gb|ACS97945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 384

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 213/388 (54%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L++  L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  AKLSAEQLAQNATK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY--- 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLEDAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L    + LGA+ +ATGHY+R R    DD  +   + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGANYIATGHYVRRR--GADDNAQ---LLRGLDTNKDQSYFLYTLSTKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD+ K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGDIAKPIVRAIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G I+GRH+G++ +T+GQR+GLG+     A  E  +VV  D  ++ +IV       +
Sbjct: 241 RTVDGDIIGRHDGLMYHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSA 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSE 356
           L    +  ++++W+        + +  +C VK R  Q  VP  ++  +D+ + V F++ +
Sbjct: 301 LLSTGLIAQQLHWVD----RQPIRESLRCTVKTRYRQTDVPCIIEPIDDESIKVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
           + V  GQ+ VFY ++      LGGGII 
Sbjct: 357 IAVTPGQSAVFYLNEV----CLGGGIIE 380


>gi|145298399|ref|YP_001141240.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166234842|sp|A4SKS0|MNMA_AERS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|142851171|gb|ABO89492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 368

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 27/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSASQDLADAKAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
           D + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     +LGA 
Sbjct: 64  DKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGAT 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R      DD      + R +D  +DQSYFL+  +++Q+    FP+GD++K  
Sbjct: 124 YIATGHYVRR-----DDSTGHPRLLRGLDSNKDQSYFLYTLSEKQVGQSLFPVGDLEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++ L  A K DS  ICF+ + K+ D + +     A  G I  ++G+++G H G+
Sbjct: 179 VRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGEHQGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + +T+GQR+GLG+     A  E  +VV   +++N+  V  G    L    +   +++W+ 
Sbjct: 237 MYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q  +P  +Q  +D+ + V F++ +  V  GQ+ VFY  +
Sbjct: 297 ----RTPIRAPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGE 352

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 353 V----CLGGGIIE 361


>gi|300361472|ref|ZP_07057649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri JV-V03]
 gi|300354091|gb|EFJ69962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri JV-V03]
          Length = 383

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 195/372 (52%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 15  IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L AD 
Sbjct: 72  DEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY  ++  V ++G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  V
Sbjct: 132 IAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 187

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 188 REIAIAAGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 245

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   F
Sbjct: 246 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 303

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  +D  KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VFY   
Sbjct: 304 TGLPDHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY--- 359

Query: 372 SNEARVLGGGII 383
            N    LGG  I
Sbjct: 360 -NGEECLGGATI 370


>gi|199598161|ref|ZP_03211583.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus
           rhamnosus HN001]
 gi|199590922|gb|EDY99006.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus
           rhamnosus HN001]
          Length = 377

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 188/375 (50%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 10  NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 67  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D +    M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 127 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 240

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 241 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                +A VDG     K R  Q    V +  +DDG   VDF+     +  GQA VFY  +
Sbjct: 301 G----EAPVDGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 356

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 357 ----ECLGGGTIDAA 367


>gi|291288175|ref|YP_003504991.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885335|gb|ADD69035.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 344

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 30/366 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++AMSGGVDS++ A ++K  GYDVIG T++ ++ +  +           ++D  +   
Sbjct: 4   KVLIAMSGGVDSTLTAHIMKEKGYDVIGCTIKFFDEQTEA-----------LHDGEKAAK 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  Y  DY + F+  VI  F  +Y  G TP PC  CNR  KF+ L    +  GA  +
Sbjct: 53  ELGIDWYYADYTDYFKEDVISYFIRTYIQGRTPNPCAHCNRHAKFNYLFREMKSKGATKI 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   ++ VG+    +    +  D+ +DQSY+L      Q   + FPLG+M+K  V+
Sbjct: 113 ATGHYA-GKVKVGE----KYFFKKGQDVRKDQSYYLCLLKDHQREVIEFPLGEMEKTDVK 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGII 260
             A E+GL +ADK +SQDICF++ G Y D ++ +I+     +G  +  +G+    H GII
Sbjct: 168 AKAAELGLSVADKDESQDICFLKGGDYRDFLESKIDKDSIKKGWFIK-DGEKFKEHEGII 226

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+   EPLFV ++D  S  +I+G ++ +    + +       D +F D  
Sbjct: 227 YYTIGQRKGLGIGYHEPLFVKHIDAESGNIILGNKDEVTGTGVKVH------DFVFPDDH 280

Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ-ACVFYTSDSNEARVL 378
              F+  VK+R    PVP  V+    +   + F++ E     GQ ACV+     N+    
Sbjct: 281 DRVFRAEVKVRYRMAPVPCMVEIHPGNTATILFDRPEFAPTPGQIACVY----ENDLVTC 336

Query: 379 GGGIIS 384
           GG I S
Sbjct: 337 GGYIES 342


>gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Francisella cf. novicida 3523]
          Length = 358

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 203/371 (54%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ VCD
Sbjct: 4   KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQAVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +I +     ++   + + V   F + Y AG TP P + CN+ +KF   LS    LG D +
Sbjct: 61  SIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++R     DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K  VR
Sbjct: 121 ATGHYAQTRQAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNVEKSKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G++ 
Sbjct: 177 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDGLMY 234

Query: 262 YTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           YTIGQR+GLG+   +     P F    D  N+  + V   +   + +  L+  E++W+  
Sbjct: 235 YTIGQRQGLGIGGVKNRPEVPWFAAKKDLANNVLIAVQGHDHPLLFKQSLQAIELSWVA- 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
           G+   A    F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY  D 
Sbjct: 294 GM---APAGKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDEPQRAITPGQSVVFYIDDV 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|116629824|ref|YP_814996.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus gasseri ATCC 33323]
 gi|116095406|gb|ABJ60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri ATCC 33323]
          Length = 383

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 197/373 (52%), Gaps = 25/373 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V
Sbjct: 14  EIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKV 70

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L AD
Sbjct: 71  ADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDAD 130

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY  ++  V ++G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  
Sbjct: 131 YIAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQ 186

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G+
Sbjct: 187 VREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGL 244

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           + YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   
Sbjct: 245 MYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSF 302

Query: 316 F---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTS 370
           F    +  +D  KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VFY  
Sbjct: 303 FTGQPEHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY-- 359

Query: 371 DSNEARVLGGGII 383
             N    LGG  I
Sbjct: 360 --NGEECLGGATI 370


>gi|15597822|ref|NP_251316.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO1]
 gi|107102147|ref|ZP_01366065.1| hypothetical protein PaerPA_01003197 [Pseudomonas aeruginosa PACS2]
 gi|116050613|ref|YP_790568.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|14195276|sp|Q9I0L2|MNMA_PSEAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122259736|sp|Q02NB8|MNMA_PSEAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9948693|gb|AAG06014.1|AE004691_5 tRNA methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|115585834|gb|ABJ11849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 375

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 203/387 (52%), Gaps = 36/387 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P+  RV+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ DA
Sbjct: 7   TPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 64  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++
Sbjct: 124 GADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GRH
Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRH 236

Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303
           +G++ +TIGQR+GLG+     A  +P +V+  D   + ++VG           +L   RI
Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           Y     W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ
Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390
           + VFY  D      LGGG+I  ++  D
Sbjct: 348 SVVFYDGDV----CLGGGVIETAEAWD 370


>gi|146307422|ref|YP_001187887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas mendocina ymp]
 gi|205816890|sp|A4XUY9|MNMA_PSEMY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145575623|gb|ABP85155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas mendocina ymp]
          Length = 370

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 203/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + P   RV+V MSGGVDSSV A LL   GY V G+ ++ ++    ++    C A  D+ D
Sbjct: 2   QAPSTQRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLAD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     
Sbjct: 59  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G++
Sbjct: 119 LGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  GDI    GQ++GR
Sbjct: 174 EKPQVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGR 231

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  +P +V+  D   + +IVG  +  E   ++ R +  
Sbjct: 232 HHGLMYHTIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVG--QGNEHPWLFSRAL-- 287

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   ++    VD     +   K+R  Q      +++ ++G    F++ +  V  GQ+ VF
Sbjct: 288 LASDIYWVNPVDLSTPRRLTAKVRYRQSDQACTLEKTENGYRAVFDEPQRAVTPGQSVVF 347

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 348 YDGEV----CLGGGVIETAQ 363


>gi|325273429|ref|ZP_08139681.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
 gi|324101442|gb|EGB99036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
          Length = 374

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G    ++ + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGAVTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    VD     +   K+R  Q      +   D G    F++ +  V  GQ+ VF
Sbjct: 293 LASEIFWVNSVDLSSPRQLTAKVRYRQSDQRCTLALTDGGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIEAAE 368


>gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT]
 gi|123327501|sp|Q0I5Y6|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus somnus 129PT]
          Length = 383

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 210/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L SL++ KN K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 12  KLTSLEIAKNSKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 68  TAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 127

Query: 128 DLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  ++ Q+ 
Sbjct: 128 AFLEYAVEDLGADYIATGHYVRR-----SDVNGQTKLLRGLDSNKDQSYFLYTLSKDQVA 182

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G+I 
Sbjct: 183 QSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKEFLARFLP--AQPGEIR 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++G+H+G++ YT+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 241 MVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGNDNSAL 300

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEV 357
               +   ++ W+ D L    +    +C VK R   QD     +  NDD V V F++ ++
Sbjct: 301 LSQGLIATQLYWV-DRL---PIRQNLRCTVKTRYRQQDIACEVIPLNDDCVEVRFDEPQI 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 357 AVTPGQSAVFYQGE----ECLGGGVIE 379


>gi|328473137|gb|EGF43985.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329]
          Length = 374

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGKHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          +P FV    LD+N    + G     L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 DDV----CLGGGIIE 366


>gi|238783798|ref|ZP_04627817.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
 gi|238715349|gb|EEQ07342.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
          Length = 373

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     +GK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +   F+C VK R  Q  +P  V   +DD V V F+     V  GQ+ VFY 
Sbjct: 296 VD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDDRVEVRFDNPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
           ++      LGGGII 
Sbjct: 352 AEV----CLGGGIIE 362


>gi|257416449|ref|ZP_05593443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis AR01/DG]
 gi|257158277|gb|EEU88237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ARO1/DG]
          Length = 374

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 198/371 (53%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M K  VR
Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMGKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FV+  D  ++ + VG     E L    +   E+++  D 
Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
                +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VFY    
Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350

Query: 373 NEARVLGGGII 383
           +    LGGG+I
Sbjct: 351 DGMECLGGGLI 361


>gi|152965276|ref|YP_001361060.1| tRNA-specific 2-thiouridylase MnmA [Kineococcus radiotolerans
           SRS30216]
 gi|151359793|gb|ABS02796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kineococcus radiotolerans SRS30216]
          Length = 359

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/371 (38%), Positives = 187/371 (50%), Gaps = 27/371 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G++V+GV + L N    + R GS  CC  +D  DARR  D + 
Sbjct: 1   MSGGVDSAVAAARAVDAGHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARRAADLLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  E F   V+  F + YAAG TP PCV CN  +KF+ LL     LG D +ATG
Sbjct: 60  IPFYVWDLSEDFVEDVVADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGFDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203
           HY  +R+  G DG  R  + R  D  +DQSY L      Q+    FPLGD   K  VR  
Sbjct: 120 HY--ARVVTGPDG--RAELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTKAEVRAE 175

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A   GL +A K DS DICF+  G     +      +   G++V  +G++LG H G   YT
Sbjct: 176 AERRGLPVASKPDSHDICFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHTGTYGYT 233

Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           +GQR+GLG+    A G P +V+ ++     V VGP E L V  +   E  W       DA
Sbjct: 234 VGQRKGLGISRPAADGRPRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW-----NADA 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN---DDGVY-VDFEKSEVGVASGQACVFYTSDSNEA 375
            V   +  V++R+  +PVP   +     DD V  V       GVA GQ    Y       
Sbjct: 289 PVGPVEVHVQVRAHGEPVPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYRG----T 344

Query: 376 RVLGGGIISGS 386
           RVLG   ISG+
Sbjct: 345 RVLGSATISGT 355


>gi|282851667|ref|ZP_06261032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 224-1]
 gi|311110534|ref|ZP_07711931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri MV-22]
 gi|205822450|sp|Q042R4|MNMA_LACGA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|282557635|gb|EFB63232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 224-1]
 gi|311065688|gb|EFQ46028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri MV-22]
          Length = 375

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 197/373 (52%), Gaps = 25/373 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V
Sbjct: 6   EIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L AD
Sbjct: 63  ADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY  ++  V ++G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  
Sbjct: 123 YIAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQ 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G+
Sbjct: 179 VREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGL 236

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           + YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   
Sbjct: 237 MYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSF 294

Query: 316 F---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTS 370
           F    +  +D  KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VFY  
Sbjct: 295 FTGQPEHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY-- 351

Query: 371 DSNEARVLGGGII 383
             N    LGG  I
Sbjct: 352 --NGEECLGGATI 362


>gi|127512489|ref|YP_001093686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella loihica PV-4]
 gi|166235081|sp|A3QD79|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella loihica PV-4]
          Length = 371

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 198/382 (51%), Gaps = 32/382 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ NP   +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+
Sbjct: 4   IEPNPNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R       D   +  M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRS-----DASGQSQMLRGVDGNKDQSYFLYTLSHEQIARSLFPV 175

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D ++      A  G I    G++
Sbjct: 176 GELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLP--AQPGKIETAEGEV 233

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G H G++ +T+GQR+GLG+     +  +P +VV  D   + ++VG     PR  L    
Sbjct: 234 IGEHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQGGKHPR--LMSVG 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
            Y  +++W+          DG K  VK R   QD         DD + V F++    V  
Sbjct: 292 FYADQLHWVD----RTGPNDGAKITVKTRYRQQDVACTLTYEGDDRIKVIFDEPVAAVTP 347

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ+ VFY  +      LGGGII
Sbjct: 348 GQSAVFYDGEV----CLGGGII 365


>gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122275384|sp|Q04B58|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 375

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 195/381 (51%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F   Y AG TP P + CN  VKF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA GHY ++   V ++G     M RP D  +DQ+YFL   TQ+Q+  + FPL D+ K  V
Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H G++
Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   +++IV   +  +  R+Y   +   G   F
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295

Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369
                ED     FK   K R  Q  V V V+        D  F++    V  GQA V Y 
Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQALVLY- 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              N    LGGG I  + + D
Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369


>gi|167464004|ref|ZP_02329093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382960|ref|ZP_08056792.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153080|gb|EFX45538.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 364

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 191/371 (51%), Gaps = 25/371 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R+++ MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D RRV
Sbjct: 4   NKRIILGMSGGVDSSVSALLLKEQGYDVIGVFMKNWDD---TVEFGHCTAEEDAEDVRRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  Y  ++E+++   V   F + Y  G TP P V CNR +KF + L     LG D
Sbjct: 61  CDQVGIPFYTVNFEKQYMEKVFSYFLNEYKRGRTPNPDVMCNREIKFGEFLQKGLDLGGD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R     G+      ++ R  D  +DQ+YFL A  Q QL    FP+G + K  
Sbjct: 121 YIATGHYARVEERNGE-----YVLLRGNDPNKDQTYFLHALNQFQLSKAMFPIGHLPKPE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E GL  A K DS  +CF+ +  + + +   N   A  G++  L G++ GRH+G+
Sbjct: 176 VRKLAEEAGLATAKKKDSTGVCFIGERNFKEFLS--NYLPAKPGEMRTLEGEVKGRHDGL 233

Query: 260 INYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRE-SLEVHRIYLREINWLGD 313
           + YT+GQR+     G   GEP FV    L  N   V+ G +  SL    +   ++NW+  
Sbjct: 234 MYYTLGQRQGLGIGGSGTGEPWFVADKDLQNNILYVVQGEKHPSLYSTGLSATDVNWISP 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              E      ++C  K R  Q D         D+   V F++ +  V  GQ+ VFY  + 
Sbjct: 294 VKPEGQ----YRCTAKFRYRQPDQGVTLTMGADNTCEVIFDEPQKAVTPGQSVVFYDGEV 349

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 350 ----CLGGGII 356


>gi|255023815|ref|ZP_05295801.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J1-208]
          Length = 291

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/280 (40%), Positives = 165/280 (58%), Gaps = 11/280 (3%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV 292
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFV 270


>gi|170718124|ref|YP_001785155.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 2336]
 gi|205816854|sp|B0UWF2|MNMA_HAES2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168826253|gb|ACA31624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus somnus 2336]
          Length = 383

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +L++ KN K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 12  KLTALEIAKNSKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 68  TAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 127

Query: 128 DLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  ++ Q+ 
Sbjct: 128 AFLEYAVEDLGADYIATGHYVRR-----SDVNGQTKLLRGLDSNKDQSYFLYTLSKDQVA 182

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A ++GL  A+K DS  ICF+ + K+ D ++R     A  G+I 
Sbjct: 183 QSLFPVGEIEKPIVRAIAGDLGLITAEKKDSTGICFIGERKFKDFLERFLP--AQPGEIR 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++G+H+G++ YT+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 241 MVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVDKDLINNVLVVAQGNDNSAL 300

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEV 357
               +   ++ W+ D L    +    +C VK R  Q  V    +  NDD + V F++ ++
Sbjct: 301 LSQGLMATQLYWI-DRL---PIRQNLRCTVKTRYRQKDVACEVIPINDDCIEVRFDEPQI 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 357 AVTPGQSAVFYQGEV----CLGGGVIE 379


>gi|28493382|ref|NP_787543.1| tRNA-specific 2-thiouridylase MnmA [Tropheryma whipplei str. Twist]
 gi|81436231|sp|Q820Y1|MNMA_TROWT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28476423|gb|AAO44512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tropheryma whipplei str. Twist]
          Length = 359

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 200/382 (52%), Gaps = 41/382 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+ AMSGGVDS+V AA     G+DV+GV L L  SR AS ++G CC  +D  DA +  
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I +  YV+D+ E F+  VI  F S Y+AG TP PC+ CN  +KFS LL     LG D 
Sbjct: 58  QAIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199
           + TGHY  +R+++ +DG  +  + R     +DQSY L    Q QL    FPLG    K+ 
Sbjct: 118 VCTGHY--ARVFLDEDGTYQ--LHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-------EGDIVHLNGQI 252
           VR  A E GL ++ K DS D+CF+            N G  L       +GDI+   GQ 
Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSS---------NTGAWLSQRIGRRDGDIIDDLGQR 224

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI--YLR 306
           +G H G   YT+GQR+GL ++     G+P +V+ ++  S+ V+VGPRESL V  +     
Sbjct: 225 VGSHTGAFAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFT 284

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W     F    ++   C V++R+  DPV       DD + V  ++    VA GQ+  
Sbjct: 285 TTGW----CFTSRPIE---CSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAA 337

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y       RVLG  +I  +K+
Sbjct: 338 IYRG----TRVLGQLMIDNTKK 355


>gi|297157006|gb|ADI06718.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces bingchenggensis
           BCW-1]
          Length = 384

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/385 (37%), Positives = 204/385 (52%), Gaps = 27/385 (7%)

Query: 17  NPKD---MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQ 71
            P+D   +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +
Sbjct: 10  GPRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIE 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL 
Sbjct: 69  DSRDARRAADVIGIPFYVWDLAERFREDVVDNFIAEYEAGRTPNPCLRCNEKIKFAALLD 128

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LG D + TGHY  + +   +DG R   + R  D+ +DQSY L    ++QL    FP
Sbjct: 129 KALALGFDAVCTGHY--ATVVHREDGTRE--LHRASDMAKDQSYVLGVLDERQLAHAMFP 184

Query: 192 LGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           LGD    K+ +R  A   GL +A K DS DICF+  G     + + + G A EGDIV  +
Sbjct: 185 LGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAK-HLGTA-EGDIVDED 242

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           G+ LG H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP ++L++  +  
Sbjct: 243 GRKLGTHEGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVDALDIASLTA 302

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
               W G      A         ++R+      V  +  D  + V F +   GVA GQA 
Sbjct: 303 ITPRWCGTPPTGPATYT-----AQLRAHGSETEVTAEAVDGELRVTFAEPVRGVAPGQAI 357

Query: 366 VFYTSDSNEARVLGGGIISGSKRSD 390
           V Y    + ARV+G   I+ ++R++
Sbjct: 358 VLY----DGARVVGSATIATTERAE 378


>gi|295836383|ref|ZP_06823316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. SPB74]
 gi|295825995|gb|EDY45586.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. SPB74]
          Length = 385

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 200/381 (52%), Gaps = 26/381 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + ++V+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 10  RPLKVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 68

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 69  RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 128

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D + TGHY  +R+ +  DG R   + R  D+ +DQSY L     +QL    FPLGD +
Sbjct: 129 GFDAVCTGHY--ARVLIRPDGSRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTE 184

Query: 197 --KESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253
             K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +G  L
Sbjct: 185 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA---EGDIVDEDGTRL 241

Query: 254 GRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G H G   +TIGQR+GL +    A G+P +V+ +    + V VGPR SL+V  +      
Sbjct: 242 GTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRASLDVASLTAVRPR 301

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W G      A +   +   ++R+      V  +     + V+F+    GVA GQA V Y 
Sbjct: 302 WCG-----TAPLTAGRYTAQLRAHGGESDVRAELAGGELRVEFDAPVRGVAPGQAVVLY- 355

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              +  RV+G   I+ +++ +
Sbjct: 356 ---DGTRVVGSATIATTRKPE 373


>gi|153838264|ref|ZP_01990931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ3810]
 gi|161511058|ref|NP_797509.2| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364461|ref|ZP_05777086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus K5030]
 gi|260877061|ref|ZP_05889416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AN-5034]
 gi|260896850|ref|ZP_05905346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus Peru-466]
 gi|260902426|ref|ZP_05910821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ4037]
 gi|32130287|sp|Q87QL9|MNMA_VIBPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149748319|gb|EDM59178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087006|gb|EFO36701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus Peru-466]
 gi|308093683|gb|EFO43378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AN-5034]
 gi|308110639|gb|EFO48179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ4037]
 gi|308114601|gb|EFO52141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus K5030]
          Length = 374

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          +P FV    LD+N    + G     L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 DDV----CLGGGIIE 366


>gi|218961454|ref|YP_001741229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730111|emb|CAO81023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Cloacamonas acidaminovorans]
          Length = 382

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 193/356 (54%), Gaps = 24/356 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAG----QDV 73
           K   V V +SGG+DS++ A LL+  GY VIG+T+Q Y+   +  K   S C G    +++
Sbjct: 3   KKTSVAVGISGGIDSAMTAYLLQESGYRVIGITMQTYDENIEMDKTLKSGCFGPAQEENI 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  +   + + HY+   +E FR+ VI  F  +Y  G+TP PC+ CN  +KF+ L    
Sbjct: 63  LSASLLWRKLGIEHYIIPLQEEFRHKVIDYFCETYIKGKTPNPCLVCNAYIKFALLPEKA 122

Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLERDQSYFLFATTQQQLCDLRF 190
             LG   D  ATGHY +    +G +   +R   R   D  +DQSYFL   +Q+QL    F
Sbjct: 123 HSLGLEFDYFATGHYAK----IGFNNTLKRYQIRKAKDANKDQSYFLAFLSQEQLAQTLF 178

Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           PLGD  K+ ++ +A   G  ++ ++ +SQD  F+Q      + K  +      G+I+ + 
Sbjct: 179 PLGDYTKQEIKKMAIGKGFTELVERKESQD--FLQSSDLEVLFKPEDFN---PGEIIDMQ 233

Query: 250 GQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G+++G+H GIINYTIGQRR LG++ M EP +V+ +D  ++R+++GP+E L   +    ++
Sbjct: 234 GKVIGKHKGIINYTIGQRRNLGISGMPEPYYVLQIDAENNRIVLGPKEYLFKKKCSATDM 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
           NW+       A    F+   KIR    P    V   ND+ + V F++ ++ +  GQ
Sbjct: 294 NWVS----LPAPEKKFRAKAKIRQQHSPADCIVTPINDNTIEVVFKEPQLSITPGQ 345


>gi|281355523|ref|ZP_06242017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Victivallis vadensis ATCC BAA-548]
 gi|281318403|gb|EFB02423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Victivallis vadensis ATCC BAA-548]
          Length = 358

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 187/365 (51%), Gaps = 17/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGGVDSSV A L ++ G +VIGVTL+L +          C +  D      +C 
Sbjct: 4   KVIVALSGGVDSSVAAVLAQQAGCEVIGVTLRLKHPDPEFSAAQLCASKNDEAAVESICA 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H+  +    F   V+ P A  YA G TP PC +CN  +KF  L+   R +GA  +
Sbjct: 64  KLGIEHHYLELFPEFECKVLRPAAQEYARGRTPNPCCECNYRIKFGKLVEFARSVGAAKV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY +   + G    RR       DL++DQSYFL+   Q  L  +RFP+G M K  VR
Sbjct: 124 LTGHYAKLSEHGGVYELRRG-----DDLKKDQSYFLYRLDQAILSMVRFPVGAMDKGEVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  +DK DSQD CF   G+ F    R    +     +    G+I+GRHNG+  
Sbjct: 179 RIAAEYGLVTSDKPDSQDACFQVPGESFGETLRRLEKLPRRPGLFRYQGRIVGRHNGVHE 238

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           +TIGQR+GL VA+G P +V  +D  S   R+   P E L   R  +  ++W   G   D 
Sbjct: 239 FTIGQRKGLNVALGVPAYVAGIDPESGDIRLETEP-ERLLASRFTVERVSWQ-SGRAPD- 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK-SEVGVASGQACVFYTSDSNEARVL 378
            + G +  V+IR     VP  V+ +  G    F    +  V  GQA VFY  D     +L
Sbjct: 296 -LSG-ELEVQIRYRSRAVPCRVEPDGAGGAAVFPAIPQRAVTPGQAAVFYRGDL----LL 349

Query: 379 GGGII 383
           GGG+I
Sbjct: 350 GGGVI 354


>gi|70731250|ref|YP_260991.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf-5]
 gi|123654441|sp|Q4K9U2|MNMA_PSEF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68345549|gb|AAY93155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 200/381 (52%), Gaps = 29/381 (7%)

Query: 15  DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D  P D    RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A  
Sbjct: 3   DPAPSDTQKKRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAMD 59

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L 
Sbjct: 60  DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP
Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I    G+
Sbjct: 175 VGELEKPEVRAIAEKHDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++GRH+G++ +TIGQR+GLG+     A  EP +V+  D   + +IVG  +  +   ++ R
Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLIKDLEHNELIVG--QGNDHPWLFSR 290

Query: 307 EINWLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
            +  L   ++    +D     +   K+R  Q   P  +++  +G    F+  +  V  GQ
Sbjct: 291 AL--LASDIYWVNPIDLSLPRRLTAKVRYRQSDQPCTLEKTTNGYRATFDDPQRAVTPGQ 348

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGG+I 
Sbjct: 349 SVVFYDGEI----CLGGGVIE 365


>gi|145219199|ref|YP_001129908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prosthecochloris vibrioformis DSM 265]
 gi|205816888|sp|A4SD47|MNMA_PROVI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145205363|gb|ABP36406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 357

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 191/376 (50%), Gaps = 37/376 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++  V+V +SGGVDS+V A +L  +GY VIG+ +++ +S +++    +      V   R 
Sbjct: 3   QETTVLVGISGGVDSAVAACMLVDEGYRVIGLNIKVLDSPESNP---ALQPSSLVISNR- 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +   +  Y  +  +RFR  VI  F   Y A  TP PC+ CN+ +K++ LL     L A
Sbjct: 59  --EEFRIPVYTLNLSKRFREDVIGYFQEEYLAARTPNPCIVCNKKIKWAGLLEAADMLNA 116

Query: 139 DVLATGHYI-------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           D++ATGHY        R RLY G D K+            DQSYFL+   Q++L     P
Sbjct: 117 DLVATGHYASTAFLGGRCRLYQGADKKK------------DQSYFLWMLQQKELLKTILP 164

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHL 248
           LG + K  VR+LAR  G+  A+K +SQ+ICFV    Y   +++    +A     G++V  
Sbjct: 165 LGTLAKPEVRELARSYGVPAAEKKESQEICFVPGDDYCRYLEQAIPDLAERVRGGELVDA 224

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+++G H G   YTIGQRRGLG + GEP++V  +D   +R+  G +  L    +    +
Sbjct: 225 SGRVIGHHRGYPFYTIGQRRGLGASTGEPIYVTSIDPVHNRIHTGKKTDLLSRELTASGM 284

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+G     +     F+   +IR    P P  V    D+   + F   +  +  GQA V 
Sbjct: 285 NWIGI----EPPKKPFEATARIRYRDAPTPCRVTPLEDNRATISFHSPKSAITRGQAAVI 340

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     VLGGG I
Sbjct: 341 YRDDE----VLGGGSI 352


>gi|258508299|ref|YP_003171050.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus GG]
 gi|257148226|emb|CAR87199.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus GG]
          Length = 372

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 5   NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 62  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D +    M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 122 YIAMGHYAQ----VKTDEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 178 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 235

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 236 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY  +
Sbjct: 296 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 351

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 352 ----ECLGGGTIDAA 362


>gi|302524933|ref|ZP_07277275.1| tRNA methyl transferase [Streptomyces sp. AA4]
 gi|302433828|gb|EFL05644.1| tRNA methyl transferase [Streptomyces sp. AA4]
          Length = 361

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 196/376 (52%), Gaps = 27/376 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCD 81
           + AMSGGVDS+V AA     G+DV+GV L L +++  + R GS  CC  +D +DARR  D
Sbjct: 1   MAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAQPGTLRTGSRGCCTIEDSHDARRAAD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  Y++D+ ERF   V+  F   YAAG TP PCV CN  +KF  LL     LG D +
Sbjct: 60  ILGIPFYIWDFAERFTEEVVETFVGEYAAGRTPNPCVTCNEKIKFEALLEKALALGFDAV 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G+   RR       D  +DQSY L +   +QL    FPLGD  K  VR
Sbjct: 120 ATGHYARLATVDGELELRRS-----ADEGKDQSYVLASLQPEQLRHAMFPLGDSWKSDVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
             A + GL +A K DS DICF+  G  K F + KR+       G++V    G +LGRH G
Sbjct: 175 AEAEQRGLSVARKPDSHDICFIPDGDTKKF-LEKRLG---ERPGELVDAETGAVLGRHTG 230

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +T+GQR+GLG+    A G P +V+ L+  S  V VG    L V  I      W    
Sbjct: 231 VHGFTVGQRKGLGIDAPAADGRPRYVLSLEPVSGTVKVGSSADLGVQAIDADRAIWP--- 287

Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                 +DG  +C V++R+         + ++DG V +   +S  GVA GQ  V Y  D 
Sbjct: 288 --SGRALDGPTECTVQVRAHGGIADAVAEVDEDGRVSIQLRESLRGVAPGQVVVLYRRDD 345

Query: 373 NEAR-VLGGGIISGSK 387
                VLG   ISG++
Sbjct: 346 QAGDLVLGSAKISGTR 361


>gi|260904921|ref|ZP_05913243.1| tRNA-specific 2-thiouridylase MnmA [Brevibacterium linens BL2]
          Length = 397

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 195/399 (48%), Gaps = 48/399 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++VAMSGGVDSSV AA     G++V+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKILVAMSGGVDSSVAAARAVDAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAHR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV+D+ ERF+  ++  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VAGMLDIPFYVWDFSERFKEDIVDDFIAEYAAGRTPNPCMRCNERIKFAALLDRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKK 197
           D +ATGHY  + +   D+G     + R  DL +DQSY L   +  QL    FP+G    K
Sbjct: 120 DAIATGHY--AEVLRDDNGLPE--LHRGEDLAKDQSYVLGVLSGDQLEHCYFPIGATASK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
             VR  A E G  +A+K DS DICF+  G   D    +   I +  G I    G+ LG H
Sbjct: 176 AEVRAEAAERGFSVANKPDSYDICFIPDG---DTKAWLADKIPMRPGLIKDAEGETLGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G + YTIGQR+GLG+    A G+P FV  LD  S+ V VG R  L V  +      W G
Sbjct: 233 DGAMTYTIGQRKGLGIQKPAADGQPRFVTGLDPASNTVTVGSRSDLAVSHLTGIRTTWAG 292

Query: 313 DGLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRND------------------------- 345
               +          C V+IR+  DPVP      D                         
Sbjct: 293 PAPTDIGSEPATAIDCEVQIRAHSDPVPARAWLGDYISEAPEHEVNPIVDEVEVPAARPA 352

Query: 346 -DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              +++D ++   GVA GQ  V Y       RVLG   I
Sbjct: 353 GQLMHIDVDEELSGVAPGQTMVIYRG----TRVLGQATI 387


>gi|318059485|ref|ZP_07978208.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actG]
 gi|318081277|ref|ZP_07988609.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actF]
          Length = 372

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 197/377 (52%), Gaps = 26/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVC 80
           ++ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DARR  
Sbjct: 1   MLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     LG D 
Sbjct: 60  DVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--KE 198
           + TGHY  +R+    DG R   + R  D+ +DQSY L     +QL    FPLGD +  K+
Sbjct: 120 VCTGHY--ARVLTHPDGSRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTETTKD 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHN 257
            +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +G  LG H 
Sbjct: 176 EIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA---EGDIVDESGTRLGTHQ 232

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +TIGQR+GL +    A G+P +V+ +    + V VGPRESL+V  +      W G 
Sbjct: 233 GAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTAVRPRWCG- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A +   +   ++R+      V  +   D + V F+    GVA GQA V Y    +
Sbjct: 292 ----TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAVVLY----D 343

Query: 374 EARVLGGGIISGSKRSD 390
             RV+G   I+ +++ +
Sbjct: 344 GTRVVGSATIATTRKPE 360


>gi|259649616|dbj|BAI41778.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Lactobacillus rhamnosus GG]
          Length = 377

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 10  NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 67  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D +    M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 127 YIAMGHYAQ----VKTDEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 240

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 241 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY  +
Sbjct: 301 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 356

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 357 ----ECLGGGTIDAA 367


>gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Shewanella violacea DSS12]
 gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Shewanella violacea DSS12]
          Length = 376

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 210/399 (52%), Gaps = 45/399 (11%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M   E T LN         + +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 1   MAAIEPTALN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 52  DEY---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + L AD +A GHY+R      + G+ R  M R +D  +DQSYFL+ 
Sbjct: 109 NKEIKFKAFLEFADEILDADFIAMGHYVRRS---DETGQSR--MLRGIDGNKDQSYFLYT 163

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D +       
Sbjct: 164 LSHEQIARSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP-- 221

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG- 293
           A  GDI    G+++G+H G++ +T+GQR+GLG+     +  +P +VV  + + + ++VG 
Sbjct: 222 AQPGDIETAEGEVIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281

Query: 294 ----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDG 347
               PR  L     Y  +++W+         VD  K  VK R  Q  V   +F++ ND G
Sbjct: 282 GGTHPR--LMSLGFYADQLHWVD----RKGPVDEAKITVKTRYRQRDVACTLFLETNDKG 335

Query: 348 ---VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              + V F++    V  GQ+ VFY+ +      LGGGII
Sbjct: 336 EDTIRVLFDEPVAAVTPGQSAVFYSGE----LCLGGGII 370


>gi|161353438|ref|NP_208127.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori 26695]
 gi|205371769|sp|O25893|MNMA_HELPY RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+++G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+D      + F+K R    P    V   D+ + V F++   GVA GQA V Y  D  
Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|119476176|ref|ZP_01616528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2143]
 gi|119450803|gb|EAW32037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2143]
          Length = 372

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 30/379 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P D +V+V MSGGVDSSV A LL++ GY V G+ ++ ++    S+    C A  D+ DA+
Sbjct: 9   PSDQKVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGSEY---CTAKDDLADAQ 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VCD + ++ +  ++   + + V   F + Y AG TP P V CNR +KF   L     LG
Sbjct: 66  AVCDQLKITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDVLCNREIKFKAFLDYALVLG 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R +  +GD    R  + +  D  +DQSYFL A +  ++    FP+GD++K
Sbjct: 126 ADYIATGHYVR-KHQMGD----RAQLIKGRDNNKDQSYFLHAVSGTEIAKTLFPVGDLEK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A +  L   +K DS  ICF+ + ++ D +++     A  G I   +G I+G H+
Sbjct: 181 PDVRAIAEKYSLTTHNKKDSTGICFIGERRFKDFLQQYLP--AQPGMIEDTDGSIMGGHS 238

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHR-----IYLRE 307
           G++ +TIGQR+GLG+     A   P +VV  DK+  R ++   +  + HR     +++ E
Sbjct: 239 GLMYHTIGQRQGLGIGGVSGAGDAPWYVV--DKDLKRNVLIIAQGSQHHRLFKQGLFVSE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I+W+ +    D +    +C  KIR  Q      +++   G  + F+  +  +  GQ+ VF
Sbjct: 297 IHWINN----DGITLPHRCKAKIRYRQVDQNCEIRKLSVGYEIVFDLPQRAITPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y ++      LGGG+I  +
Sbjct: 353 YDNEI----CLGGGVIEAA 367


>gi|282861250|ref|ZP_06270315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. ACTE]
 gi|282563908|gb|EFB69445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. ACTE]
          Length = 377

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 198/386 (51%), Gaps = 25/386 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  + + + +DG R   + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHY--ATVVLTEDGTRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDIV   G  +G
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDIVDEAGTKVG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +      W
Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIRPRW 300

Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            G          G   +  ++R+      V  +  D  + V F +   GVA GQA V Y 
Sbjct: 301 CG------TAPSGPGTYTAQLRAHGGETEVTAELVDGTLNVSFTEPVRGVAPGQAVVLY- 353

Query: 370 SDSNEARVLGGGIISGSKRSDAVEES 395
              +  RV+G   I+ + R +    S
Sbjct: 354 ---DGTRVVGSATIATTVRRETAAAS 376


>gi|330810455|ref|YP_004354917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327378563|gb|AEA69913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 374

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 197/381 (51%), Gaps = 29/381 (7%)

Query: 15  DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D  P D    RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  
Sbjct: 3   DPAPSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTE---YCTAMD 59

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L 
Sbjct: 60  DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP
Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I    G+
Sbjct: 175 VGELEKPEVRAIAEKHQLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           ++GRH+G++ +TIGQR+GLG+     A  EP +V+  D   + +IVG       L    +
Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLEHNELIVGQGNDHPWLFSRAL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              +I W+        + +  +   K+R  Q   P  +++   G    F+  +  V  GQ
Sbjct: 293 LASDIYWVN----PIDLGEPRRLTAKVRYRQSDQPCTLEKTATGYRATFDDPQRAVTPGQ 348

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGG+I 
Sbjct: 349 SVVFYDGEI----CLGGGVIE 365


>gi|78188235|ref|YP_378573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium chlorochromatii CaD3]
 gi|123580466|sp|Q3ATZ5|MNMA_CHLCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78170434|gb|ABB27530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium chlorochromatii CaD3]
          Length = 359

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            ++V +SGGVDS+V   LL + GY V  V L+L ++  A   + +      V        
Sbjct: 6   HILVGISGGVDSAVATCLLVQQGYRVTAVNLRLLDTLDAPYAEPTLQPSSLVVSDH---P 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++  +  +    FR+ V+  F + Y AG TP PC+ CNR VK++ L      +GA+ +
Sbjct: 63  DYHIPLFSLNLSRTFRDEVMRYFNAEYLAGRTPNPCMVCNRQVKWAGLRHAAELIGANAI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         DG+ R  + +  D ++DQSYFL+  +Q+ L     PLG + K  VR
Sbjct: 123 ATGHYANRAF---SDGRYR--LYKGADSQKDQSYFLWMLSQKDLAHTLLPLGGLTKPEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA---LEGDIVHLNGQILGRHNG 258
           +LA+  G+  A+K +SQ+ICFV    Y   +      +A    +GDIV   G ++G+H G
Sbjct: 178 ELAKNFGVRAAEKKESQEICFVPNDDYSTYLMSAMPELAERVADGDIVDAAGTVIGKHRG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLGV+  EPL+V  LD   +R+ VG + +L  HR+     NW+G     +
Sbjct: 238 YPFYTIGQRRGLGVSAKEPLYVTALDAEQNRIHVGHKAALMSHRLLASRCNWIG----ME 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +   +IR         V   ++G + V F++ +  +  GQA VFY  D     V
Sbjct: 294 PPSSSVELLGRIRYRDRQTACRVTPLENGQIEVVFQEPKSAITPGQAVVFYCGD----EV 349

Query: 378 LGGGII 383
           LGGG I
Sbjct: 350 LGGGFI 355


>gi|318606118|emb|CBY27616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 373

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     +GK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLTQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ VFY 
Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|332162070|ref|YP_004298647.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666300|gb|ADZ42944.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860067|emb|CBX70393.1| tRNA-specific 2-thiouridylase mnmA [Yersinia enterocolitica W22703]
          Length = 373

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     +GK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ VFY 
Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|308185086|ref|YP_003929219.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180]
 gi|308061006|gb|ADO02902.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180]
          Length = 342

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 200/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAQNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+          +K R    P   FV   D  + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKKGEYS-----IKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYQDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|256425783|ref|YP_003126436.1| tRNA-specific 2-thiouridylase MnmA [Chitinophaga pinensis DSM 2588]
 gi|256040691|gb|ACU64235.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Chitinophaga pinensis DSM 2588]
          Length = 366

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 19/369 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           +V+VAMSGG+DS+V A +L   GY+V+G+T++   Y S  +SK++  CC      DAR  
Sbjct: 6   KVLVAMSGGIDSTVTALMLHEQGYEVVGITMKTWDYASAGSSKKETGCCNLDSFNDARAA 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                  H+V D  + F + VI  F   Y AG TP PCV CN  +K+  L+     +   
Sbjct: 66  AVHHGFPHFVLDIRDEFGDFVINNFVDEYIAGRTPNPCVLCNTHIKWRALMKRADAMDCA 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + R   G     R I+ + +D  +DQSY L+   Q  L     PLG  +K  
Sbjct: 126 FIATGHYAQIREQDG-----RHILSKGIDDLKDQSYVLWGLQQDVLARTILPLGQYRKTE 180

Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           +R +A + G  ++A K++S +ICFV    Y   +KR   G+  +   G+ V  +G I+G 
Sbjct: 181 IRQMAFDFGYPELAKKAESYEICFVPDNDYRGFLKRKVDGLEEQVNGGNFVLRDGTIVGH 240

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GL +A+G P+FV  +   ++ V++G  + L  + + +  +N +    
Sbjct: 241 HKGYPFYTIGQRKGLDIALGRPVFVTEIIPETNTVVLGNEDELNRNEMTVAGLNMIK--- 297

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
             D + +G +   KIR         +   D  V V+F +   G+A GQ+ VFY  D    
Sbjct: 298 -YDHIPEGMEAITKIRYKDKGALSNLYNVDGKVKVNFYEHVKGIAPGQSAVFYEGDD--- 353

Query: 376 RVLGGGIIS 384
            V+ GGII 
Sbjct: 354 -VIAGGIIQ 361


>gi|2314503|gb|AAD08378.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 360

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 209/384 (54%), Gaps = 37/384 (9%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 6   ARLRAITHNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 58

Query: 67  CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                D+Y  +A++ C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +
Sbjct: 59  ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLM 114

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF   L    +LG + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + 
Sbjct: 115 KFGLALDHALKLGCEKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEV 169

Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +  L FPLGD+ K+ ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  + 
Sbjct: 170 IAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 226

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299
            EG + +L G+++G H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L 
Sbjct: 227 KEGVVKNLQGEVIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLA 286

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
            H +  +  + + D  F+D      + F+K R    P    V   D+ + V F++   GV
Sbjct: 287 THSLKAKNKSLMKD--FKDG-----EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGV 339

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A GQA V Y  D     +LGGG+I
Sbjct: 340 AKGQALVVYKDDI----LLGGGVI 359


>gi|224371642|ref|YP_002605806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
 gi|223694359|gb|ACN17642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
          Length = 365

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 36/366 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
             +AMSGG+DS V A +LKR G+D++G+               +     +  D   + D 
Sbjct: 30  TAIAMSGGIDSLVAAHVLKRQGHDLVGIHF-------------TTGFESEAVDLSSIEDQ 76

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +  D    F  AV+  F  +YA G+TP PCV CNRT+KF  L    + LGA+ +A
Sbjct: 77  LDIKIHQMDLSAEFNRAVVDYFVKTYARGKTPNPCVVCNRTIKFGVLAQRAKTLGAEKIA 136

Query: 143 TGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           TGHY          G R R      + + +D  +DQSYFL   +Q+QL    FPLG M K
Sbjct: 137 TGHYA---------GTRTRSNGGIALVKGVDGVKDQSYFLAMLSQEQLKQAVFPLGRMTK 187

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR++AR+  L   ++ +SQDICF++   +   V    +     GDIV  +G ++GRH 
Sbjct: 188 EQVRNIARDNRLMPVEEKESQDICFIKAPGFSGFVAARLSTPPSPGDIVLTDGTVVGRHR 247

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YTIGQRRGL     EP +V  +D  ++ ++VG ++ L   ++ + ++NW+   L  
Sbjct: 248 GLHRYTIGQRRGLNSPGPEPYYVKTIDMENNLLVVGGKKELYTIKVAVGDLNWITPPL-- 305

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                  K   KIR S       +   +D   + F+  ++ V  GQ  VFY     +  V
Sbjct: 306 ---ASSLKVTTKIRYSHKGAASTLSIENDRTTLVFDAPQLAVTPGQVAVFY----RDEEV 358

Query: 378 LGGGII 383
           LG GII
Sbjct: 359 LGAGII 364


>gi|86742330|ref|YP_482730.1| tRNA-specific 2-thiouridylase MnmA [Frankia sp. CcI3]
 gi|123750792|sp|Q2J6U1|MNMA_FRASC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86569192|gb|ABD13001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. CcI3]
          Length = 352

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 149/369 (40%), Positives = 191/369 (51%), Gaps = 28/369 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S + S R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPE-SDRTGARGCCTIEDARDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  +RF   VI  F  SYAAG TP PCV CN  +KF+ +L     LG 
Sbjct: 60  AADILGIPFYVWDLADRFETDVIEEFVESYAAGRTPNPCVRCNERIKFAAVLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + + TGH+ R    +  DG  R    R +D ++DQSY L     +QL   RFPLGD  K 
Sbjct: 120 EAVVTGHHAR----LDPDGTLR----RSVDPDKDQSYVLGTLRPEQLAAARFPLGDSTKA 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A E  L +ADK DS DICF+  G     + R   G      I    GQ LG H+G
Sbjct: 172 QVRVEAAERRLAVADKPDSHDICFISHGDTGGWL-RERLGPRPGPVIDATTGQTLGHHDG 230

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQRRGL +    A G P +V+ +   +S V VGP E+L+V R+      W  +G
Sbjct: 231 AYAFTVGQRRGLKLGRPAADGRPRYVLDISPVTSTVTVGPAEALDVRRLVADRAVWPHEG 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                      C  ++R+    VP   Q  D+ + V       G A+GQA V Y  D   
Sbjct: 291 --------AVSCLAQVRAHGGVVPAVAQARDEELVVTLTTPVRGTAAGQAVVLYDGD--- 339

Query: 375 ARVLGGGII 383
            RVLGGG I
Sbjct: 340 -RVLGGGHI 347


>gi|258539512|ref|YP_003174011.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus Lc 705]
 gi|257151188|emb|CAR90160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus Lc 705]
          Length = 372

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 5   NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 62  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D +    M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 122 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 178 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 235

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 236 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY  +
Sbjct: 296 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 351

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 352 ----ECLGGGTIDAA 362


>gi|257453848|ref|ZP_05619126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enhydrobacter aerosaccus SK60]
 gi|257448775|gb|EEV23740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 211/389 (54%), Gaps = 24/389 (6%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           +T +N  D+  +P   RV+V MSGGVDSSV A LLK+ G+DV G+ ++ +     ++   
Sbjct: 4   STAVNLSDI-ASPAQTRVIVGMSGGVDSSVTAVLLKQAGFDVEGLFMKNWEEDDGTEY-- 60

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ V D I +  +  ++   + + V   F + Y+AG TP P + CN+ VK
Sbjct: 61  -CTAMTDLADAQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYSAGRTPNPDILCNKEVK 119

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F   L     LGAD +ATGHY R R +  + GK    + R +D  +DQSYFL A    ++
Sbjct: 120 FKAFLDYALTLGADYIATGHYAR-RGFSDETGKAP--LLRGLDNNKDQSYFLHAVAGDKI 176

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G ++K  VR +A +  L  A K DS  ICF+ + ++ D +++     A +GDI
Sbjct: 177 AKTLFPVGALEKPEVRRIAEQYDLATAKKKDSTGICFIGERRFKDFLQQYLP--AQKGDI 234

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RES 297
              +G+ +G H+G++ YT+GQR G+G+   +     P FV++ D +++R+IVG       
Sbjct: 235 YTDDGKKIGTHDGLMYYTLGQRGGIGIGGVKDRDEAPWFVLHKDLDNNRLIVGQGHDHPM 294

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVF-VQRNDDGVYVDFEK 354
           L+   +   +++W+ D   +     G++C  K R  Q      VF +    D + V F++
Sbjct: 295 LQSTELTAYKLDWVVDAPAQLFTAQGYRCTAKTRYRQPDQACTVFALDETGDTIKVVFDE 354

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  V  GQ+CVFY  D      LGGG+I
Sbjct: 355 PQRAVTPGQSCVFYQDDI----CLGGGVI 379


>gi|149191014|ref|ZP_01869275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio shilonii AK1]
 gi|148835148|gb|EDL52124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio shilonii AK1]
          Length = 369

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 32/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+ SR +  ++G++ + M R +D  +DQSYFL+  +  Q+    FP+G+++K  V
Sbjct: 125 IAMGHYV-SRTF-PENGEKPQ-MLRGLDSNKDQSYFLYTLSHDQVARSLFPVGELEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308
            +T+GQR+GL +          EP +V   +KN  R ++          L+ + +   ++
Sbjct: 240 YHTLGQRKGLHIGGQKGGGGNEEPWYVA--EKNLERNVLIAVQGADHPLLKSNGLRASQL 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+      +A+ +  +C VK R  Q  +P   +  +DD + V F++ +V V  GQ+ VF
Sbjct: 298 HWVS----REAIKEPMQCTVKTRYRQQDIPCTIIPIDDDNIKVIFDEPQVAVTPGQSAVF 353

Query: 368 YTSDSNEARVLGGGIIS 384
           Y+ +      LGGGII 
Sbjct: 354 YSDNV----CLGGGIIE 366


>gi|238762225|ref|ZP_04623197.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
           33638]
 gi|238699572|gb|EEP92317.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
           33638]
          Length = 373

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     +GK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---EGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ VFY 
Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDELVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|222823281|ref|YP_002574854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter lari RM2100]
 gi|254811447|sp|B9KEW8|MNMA_CAMLR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222538502|gb|ACM63603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter lari RM2100]
          Length = 338

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 199/368 (54%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK+ G+++IG  ++L+      +        +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKQAGHEIIGCYMKLHGKPNYHE--------ENIQKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF ++Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLGIKYHILDLQEDFKNQVYMPFINTYKDGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      ++G    ++    D  +DQSYFL    ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARI-----ENG----LIKTAFDDSKDQSYFLANADKEALEYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G +   +G+ +G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGIVRDSSGKEVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ +D   + +IVG +E L+++   L +IN     LF 
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKIDPKKNEIIVGKKEELKINEFDLEKIN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA      C VKIR      P  V  NDD    V  ++   G+ASGQ  VFY  D     
Sbjct: 277 DA--KELDCEVKIRYRSRSTPCKVMINDDKSAKVILKEPVYGLASGQMAVFYDKD----L 330

Query: 377 VLGGGIIS 384
           VL  G I+
Sbjct: 331 VLASGFIN 338


>gi|328462804|gb|EGF34672.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 372

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 5   NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 62  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D +    M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 122 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 178 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 235

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 236 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY  +
Sbjct: 296 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTAIVDFDVPVRAITPGQAVVFYDGE 351

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 352 ----ECLGGGTIDAA 362


>gi|33151616|ref|NP_872969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus ducreyi 35000HP]
 gi|71153355|sp|Q7U342|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus ducreyi 35000HP]
          Length = 384

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 205/377 (54%), Gaps = 28/377 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ 
Sbjct: 23  KNKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQN 79

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137
           V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LG
Sbjct: 80  VADRLGIKLHKINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEYAAEDLG 139

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R       D +  +++ R +D  +DQSYFL+  + QQ+    FP+G+++K
Sbjct: 140 ADYIATGHYVRRSA----DNENAQLL-RGLDANKDQSYFLYTLSNQQVAKSLFPVGEIEK 194

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ + + R     A  GDI  + G+I+GRH+
Sbjct: 195 PMVRQIATDLGLVTAKKKDSTGICFIGERKFKEFLARFLP--AQPGDISTVEGEIVGRHD 252

Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ YT+GQR+GLG+        +P +VV  D  ++ +IV       +L    +   +++
Sbjct: 253 GLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLVNNVLIVAQGHDNSALLSTGLIANQLH 312

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+        + D  +C VK R  Q  +   V+  D + + V F++ ++ V  GQ+ VFY
Sbjct: 313 WVD----RKTIGDTLRCTVKTRYRQTDIACLVEPIDAENIRVIFDEPQIAVTPGQSAVFY 368

Query: 369 TSDSNEARVLGGGIISG 385
             +      LGGG+I  
Sbjct: 369 QGEV----CLGGGVIEA 381


>gi|238853983|ref|ZP_04644340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 202-4]
 gi|238833428|gb|EEQ25708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 202-4]
          Length = 375

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 196/373 (52%), Gaps = 25/373 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    S   G C A +D  D ++V
Sbjct: 6   EIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L AD
Sbjct: 63  ADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY  ++  V ++G     M RP D  +DQ+YFL   +Q QL  + FPL ++ K  
Sbjct: 123 YIAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQ 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G+
Sbjct: 179 VREIAIYAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGL 236

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           + YTIGQR GLG+       +P FVV  D   + +IV   +  +   +Y   ++  G   
Sbjct: 237 MYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSF 294

Query: 316 F---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTS 370
           F    +  +D  KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VFY  
Sbjct: 295 FTGQPEHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY-- 351

Query: 371 DSNEARVLGGGII 383
             N    LGG  I
Sbjct: 352 --NGEECLGGATI 362


>gi|326443600|ref|ZP_08218334.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces clavuligerus ATCC
           27064]
          Length = 367

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 193/371 (52%), Gaps = 26/371 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DARR  D I 
Sbjct: 1   MSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAADVIG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     LG D + TG
Sbjct: 60  IPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDAVCTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVRD 202
           HY  + +    DG R   + R  D+ +DQSY L    ++QL    FPLGD    K+ +R 
Sbjct: 120 HY--ATVVTLPDGGRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTTKDEIRA 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            A   GL +A K DS DICF+  G     +  R+      EGDIV  +G  LG H G   
Sbjct: 176 EAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDESGTRLGTHEGAYG 232

Query: 262 YTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           +TIGQR+GL +    A G+P +V+ +    +RV VGP E+L+V  +      W G     
Sbjct: 233 FTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRPRWCG----- 287

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            A         ++R+     PV  +   DG+ V+F +   GVA GQA V Y    +  RV
Sbjct: 288 TAPAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIVLY----DGTRV 343

Query: 378 LGGGIISGSKR 388
           +G   I+ ++R
Sbjct: 344 VGSATIASTRR 354


>gi|229552096|ref|ZP_04440821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229314529|gb|EEN80502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 377

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 10  NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 67  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D +    M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 127 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 240

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 241 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY  +
Sbjct: 301 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 356

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 357 ----ECLGGGTIDAA 367


>gi|77360631|ref|YP_340206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123588218|sp|Q3IH16|MNMA_PSEHT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76875542|emb|CAI86763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 366

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAADDLKDAQAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    Q LGAD
Sbjct: 64  DKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R  L   DD   + +MCR +D  +DQSYFL+  + + +    FP+GD+ K  
Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDDNKDQSYFLYTLSHEHIGQTLFPVGDIAKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G  +G H G+
Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GL +       GEP +VV  D   + +IVG     PR  L  + +   +++
Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQGKDHPR--LYSNGLNANQLH 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           W+ D +         +C VK R  Q+ +   +   +DG+  V F++ +  V  GQ+ VFY
Sbjct: 295 WV-DRIGPKGTT---RCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFY 350

Query: 369 TSDSNEARVLGGGII 383
             D      LGGGII
Sbjct: 351 AEDV----CLGGGII 361


>gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
 gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
          Length = 377

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 194/372 (52%), Gaps = 25/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   +  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +    D+     +M R  D  +DQ+YFL      QL  + FPL    K+ VR
Sbjct: 125 ATGHYADLKR---DEAGNMHLM-RAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            LA++ GL +ADK DS  ICF+ + G + + + +     A +G++  ++G+++G H G++
Sbjct: 181 QLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGTHAGLM 238

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
            YTIGQR+GLG+       +P FV+  D   + + VG     E L    +   +I+W+ D
Sbjct: 239 YYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
            +        F C  K R  Q    V V+ +DDG  V V  +     +  GQA VFY  D
Sbjct: 299 VVSRYGTE--FHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGD 356

Query: 372 SNEARVLGGGII 383
                 LG  II
Sbjct: 357 ----ECLGSAII 364


>gi|119470125|ref|ZP_01612891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonadales bacterium TW-7]
 gi|119446546|gb|EAW27820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonadales bacterium TW-7]
          Length = 366

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    Q LGAD
Sbjct: 64  DKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R  L   DD   + +MCR +D  +DQSYFL+  + + +    FP+GD+ K  
Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDNNKDQSYFLYTLSHEHIAQTLFPVGDIAKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E  L   DK DS  ICF+ + K+ D +++     A  G I    G  +G H G+
Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTEGNNVGEHEGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GL +       GEP +VV  D   + +IVG     PR  L  + +   +++
Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKDHPR--LYSNGLNANQLH 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           W+ D +         +C VK R  Q+ +   +   DDG+  V F++ +  V  GQ+ VFY
Sbjct: 295 WV-DRVGPKGTT---RCTVKTRYRQEDINCTLLVGDDGMARVLFDEPQKAVTPGQSAVFY 350

Query: 369 TSDSNEARVLGGGII 383
             +      LGGGII
Sbjct: 351 AQEV----CLGGGII 361


>gi|170722583|ref|YP_001750271.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida W619]
 gi|205816891|sp|B1JBJ1|MNMA_PSEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169760586|gb|ACA73902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida W619]
          Length = 374

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R    D G    ++ + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR----DTGAVTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           H+G++ +TIGQR+GLG+     A  EP +V++ D   + ++VG  +  E   ++ R +  
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVG--QGNEHPWLFSRAL-- 292

Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           L   +F    +D         K+R  Q      +   + G    F++ +  V  GQ+ VF
Sbjct: 293 LASEIFWVNPIDLSSPRTLTAKVRYRQSDQRCTLALTESGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 353 YDGEV----CLGGGVIETAE 368


>gi|21223845|ref|NP_629624.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces coelicolor A3(2)]
 gi|256785060|ref|ZP_05523491.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces lividans TK24]
 gi|289768953|ref|ZP_06528331.1| tRNA methyl transferase [Streptomyces lividans TK24]
 gi|6226260|sp|O86583|MNMA_STRCO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3402255|emb|CAA20191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces coelicolor A3(2)]
 gi|289699152|gb|EFD66581.1| tRNA methyl transferase [Streptomyces lividans TK24]
          Length = 376

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 200/383 (52%), Gaps = 28/383 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 9   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 68  RRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 127

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  +++ + +DG R   + R  D+ +DQSY L     +QL    FPLGD  
Sbjct: 128 GFDAVCTGHY--AQVILREDGVRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTV 183

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253
             K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV   G  L
Sbjct: 184 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGNTQGFLADRLGKA---EGDIVDEAGNRL 240

Query: 254 GRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G H G   YTIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  
Sbjct: 241 GTHEGAYGYTIGQRKGLRIGTPAPDGKPRYVLDISPVNNTVTVGPAEALDVDALRAIKPR 300

Query: 310 WLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           W G      A   G   +  ++R+      V  +  D  + V F +   GVA GQA V Y
Sbjct: 301 WCG------AAPTGPGTYTAQLRAHGGETEVRAELVDGTLEVTFSEPVRGVAPGQAIVLY 354

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
               +  RV+G   I+ + R+ A
Sbjct: 355 ----DGTRVVGSATIASTTRATA 373


>gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO
           3956]
 gi|229486413|sp|B2GB92|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Lactobacillus fermentum IFO 3956]
          Length = 377

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 195/372 (52%), Gaps = 25/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   +  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +    D+     +M R  D  +DQ+YFL      QL  + FPL    K+ VR
Sbjct: 125 ATGHYADLKR---DEAGNMHLM-RAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            LA++ GL +ADK DS  ICF+ + G + + + +     A +G++  ++G+++G H G++
Sbjct: 181 QLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGTHAGLM 238

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
            YTIGQR+GLG+       +P FV+  D   + + VG     E L    +   +I+W+ D
Sbjct: 239 YYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
            +    +   F C  K R  Q    V V+ +DDG  V V  +     +  GQA VFY  D
Sbjct: 299 VVSRYGME--FHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGD 356

Query: 372 SNEARVLGGGII 383
                 LG  II
Sbjct: 357 ----ECLGSAII 364


>gi|238749636|ref|ZP_04611141.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
 gi|238712291|gb|EEQ04504.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
          Length = 373

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGKHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +        V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ VFY 
Sbjct: 296 VD----RQPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|238758422|ref|ZP_04619599.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
 gi|238703326|gb|EEP95866.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
          Length = 373

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDLANNILLVAQGHEHPRLMSVGLAAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +        V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ VFY 
Sbjct: 296 VD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDSPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|325567216|ref|ZP_08143883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158649|gb|EGC70795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 372

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 205/378 (54%), Gaps = 25/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D  +
Sbjct: 4   ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 61  VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +++ V ++G     M R +D  +DQ+YFL   +Q+QL    FPLG M+K 
Sbjct: 121 DYVATGHY--AQVTVDENGVTH--MLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A   GL  A K DS  +CF+ +  +   +   N   A +G++V L+G++ G+H+G
Sbjct: 177 EVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234

Query: 259 IINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           ++ YTI    G   G G A  EP FVV  D  ++ + VG      +L  +R+   +I++ 
Sbjct: 235 LMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYAYRLEASQIHFT 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
            +   +D   + F C  K R  Q  VPV V+  D D   V F++    +  GQA VFY  
Sbjct: 295 TE---QDRGTE-FSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY-- 348

Query: 371 DSNEARVLGGGIISGSKR 388
             +    LGGG+I  + +
Sbjct: 349 --DGMECLGGGLIDAAYK 364


>gi|284044473|ref|YP_003394813.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Conexibacter woesei DSM 14684]
 gi|283948694|gb|ADB51438.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Conexibacter woesei DSM 14684]
          Length = 519

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 29/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +VAMSGGVDS+V A L  R+  DV+ VTL+L+   +    + SCC+ Q V  AR +  
Sbjct: 144 RTLVAMSGGVDSAVAALLAARESGDVVAVTLELWADEQNDGER-SCCSAQAVRFARALAH 202

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   D  E F   V+ PF   +AAG TP PCV CN  V+   +L +  +LGA  L
Sbjct: 203 RMGLPHLTLDLREEFSAGVVTPFLDDHAAGLTPNPCVRCNGHVRLDAMLELADRLGAATL 262

Query: 142 ATGHYIR------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ATGHY R               +     +   ++    D  +DQ+Y L A     L  LR
Sbjct: 263 ATGHYARVEPAEPVEPAAAPAEHAAAPAEHGPLLRAAADAWKDQTYMLAALAPASLARLR 322

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL 248
           FPLGD+ K  VR LA E  L +A K++SQD+CF+      + + R +AGIA   G++V  
Sbjct: 323 FPLGDLTKPQVRALAAEAELPVASKAESQDLCFLAGTSRSEFLAR-HAGIAQRPGEVVDA 381

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G ++G H G   +T+GQRRGLGVA  EPL+V+  D  S+RV+ G R  L    + +R  
Sbjct: 382 AGDVIGAHTGHHGFTVGQRRGLGVAAEEPLYVLRTDPASNRVVAGTRAQLATTSVPVRGA 441

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVY----VDFEKSEVGVASGQ 363
               DG   D         VK+R    P+P   V     G +    +  E+   G A GQ
Sbjct: 442 RLHRDGARVD--------RVKLRYRAKPLPARVVGAPAAGTHRRLEIALEEPVDGAAPGQ 493

Query: 364 -ACVF 367
            AC+ 
Sbjct: 494 LACLM 498


>gi|123442025|ref|YP_001006008.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|205828986|sp|A1JLK6|MNMA_YERE8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122088986|emb|CAL11797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     +GK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ VFY 
Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|323340632|ref|ZP_08080884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091755|gb|EFZ34375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 375

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 192/372 (51%), Gaps = 25/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ +K S   G C   +D  D  +V 
Sbjct: 7   IRVVVGMSGGVDSSVCAYLLKRQGYDVVGVFMKNWDEKKDS---GVCTVTEDYQDVAKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    +L AD 
Sbjct: 64  NEIGIPYYSVNFEKEYWDGVFTYFLDEYRHGRTPNPDVMCNKEVKFKAFLDYAMELDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY  +++   DDG     + R  D  +DQ+YFL   + +QL    FP+G M+K  V
Sbjct: 124 IAMGHY--AQIKRDDDGTVH--LMRGADQNKDQTYFLSQLSGKQLEKAMFPIGGMQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++ GL  ADK DS  +CF+ +  +   +       A  G ++   G+  G H G++
Sbjct: 180 REIAKKAGLATADKKDSTGVCFIGERNFSKFLSEFLP--AKPGKMMTFEGEYKGEHFGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           NYTIGQRRGLG+       EP FVV  D  ++ + VG     E L    +   +++++  
Sbjct: 238 NYTIGQRRGLGIGGDGKSNEPWFVVGKDLKTNTLYVGQGYHNEHLYATSLDATKLSFVAP 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371
              ED     F C  K R  Q    V V  ND+   V V F+     +  GQ  VFY  +
Sbjct: 298 --IEDR-GQSFHCTAKFRYRQKDSGVTVNFNDERNKVEVVFDNPVRAITPGQEIVFYDGE 354

Query: 372 SNEARVLGGGII 383
                 LG G I
Sbjct: 355 ----ECLGSGTI 362


>gi|114047179|ref|YP_737729.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-7]
 gi|122944742|sp|Q0HW33|MNMA_SHESR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113888621|gb|ABI42672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. MR-7]
          Length = 372

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADDILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++MGL   DK DS  ICF+ + K+ + +   N   A  G+I    G+++G+H G++
Sbjct: 185 REIAKKMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETAEGEVIGKHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + ++VG     PR  L  + +++ +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMFVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +         V+G +  VK R  Q  +P      +D+ + V F++    V  GQ+ VFY 
Sbjct: 301 VD----RKGPVEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            D      LGGGII
Sbjct: 357 GDV----CLGGGII 366


>gi|238791830|ref|ZP_04635467.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
 gi|238728934|gb|EEQ20451.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
          Length = 373

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +        +   F+C VK R  Q  +P  V   D+  V V F+     V  GQ+ VFY 
Sbjct: 296 VD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDNERVEVRFDNPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|254480686|ref|ZP_05093933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2148]
 gi|214039269|gb|EEB79929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2148]
          Length = 363

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +     ++    C A +D  DA+ V D
Sbjct: 8   KVIVGMSGGVDSSVSALLLKEQGYAVEGLFMKNWEEDDGTEY---CTAKEDFADAQAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 65  KLGIKLHGANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFKAFLDYALTLGADLI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  L  G     +  + + +D  +DQSYFL A   ++L    FP+GD++K  VR
Sbjct: 125 ATGHYTRLGLAAG-----QATLLKGLDPNKDQSYFLHAVGHRELAKTLFPVGDIEKPEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E  L  A K DS  ICF+ + ++ D +++     A  GDIV L+G+ LG+H G++ 
Sbjct: 180 SLAEEYDLATAKKKDSTGICFIGERRFSDFLQQYLP--AQPGDIVSLDGEHLGQHQGLMY 237

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+        +P +VV  D +++ ++V       +L    +   E+ W+  
Sbjct: 238 HTIGQRQGLGIGGLANHTDDPWYVVEKDLDNNVLLVAQGNDHPALFKSSLVTGEVFWVAG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                      +C  K+R  Q      +     G  V+F+  +  +  GQ+ VFY  ++ 
Sbjct: 298 A----PPPLPLQCTAKVRYRQSDQSCTITEQKGGYQVEFDAPQRAITPGQSVVFYLGET- 352

Query: 374 EARVLGGGII 383
               LGGG+I
Sbjct: 353 ---CLGGGVI 359


>gi|239928784|ref|ZP_04685737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291437105|ref|ZP_06576495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340000|gb|EFE66956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 378

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 142/387 (36%), Positives = 201/387 (51%), Gaps = 28/387 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           D  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 3   DTPQPSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  +++ + +DG R   + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHY--AKVVLREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247
           PLGD    KE +R  A   GL +A K DS DICF+  G     +  R+      EGDIV 
Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLANRLGRA---EGDIVD 234

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +G  +G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  +
Sbjct: 235 ESGAKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTAL 294

Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
                 W G      A  +G   +  ++R+      V  +  D  + V F +   GVA G
Sbjct: 295 TAIRPRWCG------AAPEGPGTYTAQLRAHGGETEVTAEPVDGELRVRFTEPVRGVAPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRS 389
           QA V Y    +  RV+G   I+ + RS
Sbjct: 349 QAIVLY----DGTRVVGSATIATTVRS 371


>gi|212634687|ref|YP_002311212.1| tRNA-specific 2-thiouridylase MnmA [Shewanella piezotolerans WP3]
 gi|226704776|sp|B8CLH4|MNMA_SHEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|212556171|gb|ACJ28625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella piezotolerans WP3]
          Length = 371

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 202/374 (54%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R     DG  +  M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRRDI---DGTSQ--MLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKSEV 183

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           RD+A+EMGL   DK DS  ICF+ + K+ D +       A  G+I    G+++G+H G++
Sbjct: 184 RDIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP--AQPGNIETSEGEVIGQHQGLM 241

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + ++VG     PR  L  + +   +++W
Sbjct: 242 YHTLGQRKGLGIGGLKNSSEDPWYVVEKDLVRNVLVVGQGGNHPR--LMSNGLLANQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G K  +K R  Q  VP  V  + DD + V F+++   V  GQ+ VFY 
Sbjct: 300 VD----RKGPAEGAKITLKTRYRQHDVPCTVTYDSDDQIRVIFDEAVAAVTPGQSAVFYD 355

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 356 GEI----CLGGGII 365


>gi|227535218|ref|ZP_03965267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187102|gb|EEI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 471

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 104 NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 160

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 161 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 220

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D      M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 221 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 276

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H+G+
Sbjct: 277 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 334

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 335 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 394

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                 A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY  D
Sbjct: 395 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 450

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 451 ----ECLGGGTIDAA 461


>gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
 gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
          Length = 370

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 201/387 (51%), Gaps = 25/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     +  + R  DL +DQ+YFL   T++ L  + FPLG++ K+
Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  +   +K  N   A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLK--NFLPAQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G   V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LG  +I    + DA   ++ S
Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370


>gi|307638008|gb|ADN80458.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyl transferase
           [Helicobacter pylori 908]
 gi|325996611|gb|ADZ52016.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2018]
 gi|325998201|gb|ADZ50409.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2017]
          Length = 342

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALKHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLKGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L    +  +  + + D
Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D  
Sbjct: 283 --FKSG-----EYFIKARYRSVPAKAFVSLEDEVIEVEFKEPFYGVAKGQALVVYKDDI- 334

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 335 ---LLGGGVI 341


>gi|191638296|ref|YP_001987462.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei BL23]
 gi|190712598|emb|CAQ66604.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus casei BL23]
 gi|327382323|gb|AEA53799.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W]
 gi|327385523|gb|AEA56997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II]
          Length = 443

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 76  NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 132

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 133 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 192

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D      M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 193 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 248

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H+G+
Sbjct: 249 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 306

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 307 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 366

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                 A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY  D
Sbjct: 367 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 422

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 423 ----ECLGGGTIDAA 433


>gi|302542324|ref|ZP_07294666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302459942|gb|EFL23035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 372

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 196/379 (51%), Gaps = 24/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           D + TGHY      V DD     +  R  D+ +DQSY L    ++QL    FPLGD    
Sbjct: 120 DAVCTGHYA---TVVRDDNGVLELH-RASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R  A   GL +A K DS DICF+  G     + R + G A EGDIV   GQ LG H
Sbjct: 176 KDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSR-HLGTA-EGDIVDEGGQKLGTH 233

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +TIGQR+GL +    A G+P +V+ +   ++ V VGP E+L+V  +   +  W G
Sbjct: 234 EGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVSALTAIKPRWCG 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
                      +   ++    +  V        DG  + V F +   GVA GQA V Y  
Sbjct: 294 AAPTGPGT---YTAQLRAHGGETEVTAEPVGGADGGELRVSFAEPVRGVAPGQAIVLY-- 348

Query: 371 DSNEARVLGGGIISGSKRS 389
             +  RV+G   I+ ++RS
Sbjct: 349 --DGTRVVGSATIAATERS 365


>gi|282890136|ref|ZP_06298667.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499987|gb|EFB42275.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 375

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 197/373 (52%), Gaps = 37/373 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV MSGGVDSSV A LLK  GY+VIG+ ++ ++    +   G C A +D  D  RVCD 
Sbjct: 7   VVVGMSGGVDSSVSALLLKEQGYNVIGMFMKNWDE---TDENGVCPATRDFEDVVRVCDQ 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I++ +Y  ++ + + + V   F      G TP P + CNR +KF  +L    QLGAD LA
Sbjct: 64  ISIPYYSVNFVKEYWDNVFSHFIEELKQGHTPNPDILCNREIKFKVMLDKALQLGADFLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R+ L      +    + + +D  +DQSYFL+A +Q+ L    FP+G+++K  VR+
Sbjct: 124 TGHYCRNYL-----AESHTQLLKGLDPGKDQSYFLYAISQRALHRALFPIGNLQKSEVRE 178

Query: 203 LAREMGLDIADKSDSQDICFVQQ-------GKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +AR+ GL  ++K DS  ICF+ +       G+Y    K         G+  ++ G ++G+
Sbjct: 179 IARKHGLSTSEKKDSTGICFIGKRDFKQFLGQYLSFQK---------GNFENVKGDVVGQ 229

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311
           H+G+  YTIGQR+GLG+   G+  FVV  D   + V++       +L    +   +++W 
Sbjct: 230 HDGVAYYTIGQRKGLGIGGQGDAWFVVGKDVERNVVVIDQGTHHPALYASTLTATDLHWH 289

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
              L +      F C  KIR  Q      +++  +G V V F   +  +   Q+ VFY  
Sbjct: 290 SPELPKTP----FTCRAKIRYRQTDQDCVIEKMSEGRVEVRFPIPQRAITPRQSIVFY-- 343

Query: 371 DSNEARVLGGGII 383
             +E   LGG II
Sbjct: 344 --DEHVCLGGAII 354


>gi|222151508|ref|YP_002560664.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Macrococcus caseolyticus JCSC5402]
 gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Macrococcus caseolyticus JCSC5402]
          Length = 371

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 194/368 (52%), Gaps = 25/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  RVC+
Sbjct: 7   KVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYEDVIRVCN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 64  QIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHAVKLGADYV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R    +DG     M R +D  +DQ+YFL   TQ+QL  + FPLG ++K  VR
Sbjct: 124 ATGHYAQIRR--SEDGVE---MLRGVDNNKDQTYFLNQLTQEQLSRVMFPLGHLQKPEVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQILGRHNGI 259
           ++A +  L  A K DS  ICF+ +  +    K   +G   A  G++  L+G+ +G H+G+
Sbjct: 179 EIALKHDLATAKKKDSTGICFIGERNF----KEFLSGYLPAQNGEMQTLDGKPMGTHSGL 234

Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + YTIGQR GLG+   G+P FVV   KN    ++   +  + H     +     D  F +
Sbjct: 235 MYYTIGQRHGLGIGGDGDPWFVV--GKNLKDNVLYVEQGFD-HDALYSDYLIASDVSFVN 291

Query: 319 AV--VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            V      +C  K R  Q    V V++ DD  + V + +    +  GQA VFY    N  
Sbjct: 292 PVDLTTPLECTAKFRYRQRDTKVTVEKIDDNTIKVTYAEPVRAITPGQAVVFY----NGE 347

Query: 376 RVLGGGII 383
             LGG  I
Sbjct: 348 VCLGGATI 355


>gi|218779733|ref|YP_002431051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761117|gb|ACL03583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 356

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 21/365 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-RRVC 80
           R+ +AMSGGVDS + A LLK+   D++G+           + +G+      V +   R  
Sbjct: 4   RIAIAMSGGVDSMISAYLLKQTCRDMVGIHFI-----TGFENEGAPPGPDGVPEPLARAS 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             +++   V + +E F   V+ PF  +Y  G TP PC+ CNRTVKF  LL   R +  A+
Sbjct: 59  KELDLPIEVVNLQEEFHTHVVAPFVDTYLKGRTPNPCMVCNRTVKFGALLDAARNRFNAE 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R     D   R  + +  DL++DQSYFL   +Q QL    FPLG+  K+ 
Sbjct: 119 KIATGHYARVR----PDSAGRFRLVKGADLKKDQSYFLGFLSQAQLGAAVFPLGEFTKDQ 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A E+GLD   K +SQ+ CF+   +Y D ++      +  GD+V++ G+++GRH G+
Sbjct: 175 IREKAVELGLDKYTKPESQETCFIADDRYRDFLQNQPGFPSRPGDVVNVQGEVIGRHQGV 234

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             +TIGQRRG+ +   E  +V  +D  ++R+ V  +  L    +++  +NW+        
Sbjct: 235 FAFTIGQRRGINIPASEAYYVQAIDPAANRITVCFKSGLLSRGVHVGGVNWI-----VPP 289

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             + F+   +IR         ++  +DG V V F++ +  V  GQ  VFY  D     VL
Sbjct: 290 QKNAFEAATRIRYRHKEAASAIEVLEDGTVNVWFDEPQSAVTPGQGAVFYQEDE----VL 345

Query: 379 GGGII 383
           G G I
Sbjct: 346 GAGWI 350


>gi|317011534|gb|ADU85281.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           SouthAfrica7]
          Length = 342

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 200/370 (54%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDAFIAAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R +     +  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+
Sbjct: 111 EKIATGHYARIK-----EIDQVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165

Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            ++ LA      +G  +    +SQ+ICFV++  Y D +K+ +  +  EG + +L G+I+G
Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222

Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G + YTIG+R+G  V    EP FVV +D   + ++VG +E L  H +  +  + + D
Sbjct: 223 THKGYVQYTIGKRKGFSVKGALEPHFVVQIDAKKNELVVGKKEDLATHFLKAQNKSLMKD 282

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F+       + F+K R    P    V   D  + V F++   GVA GQA V Y  D  
Sbjct: 283 --FKSG-----EYFIKARYRSMPTKALVSLKDGMIEVGFKEPFYGVAKGQALVVYEDDI- 334

Query: 374 EARVLGGGII 383
              VLGGG+I
Sbjct: 335 ---VLGGGVI 341


>gi|238796003|ref|ZP_04639515.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
 gi|238720208|gb|EEQ12012.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
          Length = 373

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     +GK R  + R +D  +DQSYFL+  + +QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +        +   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ VFY 
Sbjct: 296 VD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|315126737|ref|YP_004068740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas sp. SM9913]
 gi|315015251|gb|ADT68589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas sp. SM9913]
          Length = 366

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    Q LGAD
Sbjct: 64  DKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R  L   DD   + +MCR +D  +DQSYFL+    + +    FP+GD+ K  
Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDDNKDQSYFLYTLGHEHIAQTLFPVGDIAKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G  +G H G+
Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GL +       GEP +VV  D   + +IVG     PR  L  + +   +++
Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKNHPR--LYSNGLNANQLH 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           W+ D +         +C VK R  Q+ +   +   +DG+  V F++ +  V  GQ+ VFY
Sbjct: 295 WV-DRVGPQGTT---RCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFY 350

Query: 369 TSDSNEARVLGGGII 383
              +NE   LGGGII
Sbjct: 351 ---ANEV-CLGGGII 361


>gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
          Length = 377

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 194/372 (52%), Gaps = 25/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   +  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +    D+     +M R  D  +DQ+YFL      QL  + FPL    K+ VR
Sbjct: 125 ATGHYADLKR---DEAGNMHLM-RAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            LA++ GL +ADK DS  ICF+ + G + + + +     A +G++  ++G+++G H G++
Sbjct: 181 QLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGTHAGLM 238

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
            YTIGQR+GLG+       +P FV+  D   + + VG     E L    +   +I+W+ D
Sbjct: 239 YYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
            +        F C  K R  Q    V V+ +DDG  V V  +     +  GQA VFY  D
Sbjct: 299 VVSRYGXE--FHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGD 356

Query: 372 SNEARVLGGGII 383
                 LG  II
Sbjct: 357 ----ECLGSAII 364


>gi|329767202|ref|ZP_08258729.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341]
 gi|328836869|gb|EGF86516.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341]
          Length = 370

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 191/372 (51%), Gaps = 25/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ +  +     +G C A +D  D  +V
Sbjct: 4   NKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVIKV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L     LGAD
Sbjct: 61  CEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +     D    R+M R +D  +DQ+YFL    Q Q+ ++ FP+G+++K+ 
Sbjct: 121 YVATGHYARVK-----DVDGERLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + + + +     A  G +V L+G I G H G+
Sbjct: 176 VRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNIRGEHIGL 233

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           ++YTIGQR GLG+       GE  F     L+ N   V  G           L       
Sbjct: 234 MHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLASSLSF- 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               ++   + F C  K R  Q    V V+   D+ V V +++    V  GQA VFY  D
Sbjct: 293 --TTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350

Query: 372 SNEARVLGGGII 383
                 LGG II
Sbjct: 351 V----CLGGAII 358


>gi|317491853|ref|ZP_07950288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920287|gb|EFV41611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 367

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 202/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +        +  C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEE---DDNEEYCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     DG  +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRRDI---DGTTQ--LLRGVDTNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G+H G++
Sbjct: 180 RKIAEQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIMTVDGEEIGQHQGLM 237

Query: 261 NYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GLG+      GE P +VV  D  ++ ++V       SL    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKDGGEDPWYVVEKDLENNVLLVAQGHDHPSLYSQGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  V + F+C VK R  Q  +   V   DD  + V F++    V  GQ+ VFY  +
Sbjct: 298 ----RKTVTEPFRCVVKTRYRQPDIACTVTPIDDERIEVRFDEPVAAVTPGQSAVFYIDE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGG+I 
Sbjct: 354 V----CLGGGVIE 362


>gi|289705112|ref|ZP_06501516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus SK58]
 gi|289558140|gb|EFD51427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus SK58]
          Length = 378

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/382 (37%), Positives = 195/382 (51%), Gaps = 25/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +  Y +D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ LL    +LG 
Sbjct: 60  ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY   R   G DG     + R  D  +DQSY L   T  QL    FPL D   K
Sbjct: 120 DAVCTGHYAAVR--PGPDGSLE--LHRAADDAKDQSYVLGVLTSDQLAHCLFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
           E VR  A E GL +A K DS DICF+  G     + +RI+      G IV   GQ LG H
Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA---PGPIVDAEGQELGTH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQR+GL +      G+P FV+ +    + V+VG RE L+V RI     +W G
Sbjct: 233 AGAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENTVVVGGRELLDVDRITGIRPSWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDD----GVYVDFEKSEVGVASGQACVF 367
             + E      F C ++ R+  + V     QR D+    G  ++  +   GVA GQ  V 
Sbjct: 293 APVPEARTGAWFDCALQFRAHGEIVEARARQRADEAGNPGWEIEPARPLRGVAPGQTAVL 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y       RVLG   I  ++ +
Sbjct: 353 YRG----TRVLGQATIDTARNA 370


>gi|116494783|ref|YP_806517.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus casei ATCC 334]
 gi|301066347|ref|YP_003788370.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Lactobacillus casei str. Zhang]
 gi|122263799|sp|Q039P7|MNMA_LACC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116104933|gb|ABJ70075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus casei ATCC 334]
 gi|300438754|gb|ADK18520.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus casei
           str. Zhang]
          Length = 377

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 10  NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 67  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D      M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 127 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H+G+
Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 240

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 241 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                 A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY  D
Sbjct: 301 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 356

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 357 ----ECLGGGTIDAA 367


>gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934142|ref|ZP_06339420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
 gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301756|gb|EFA94022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 198/389 (50%), Gaps = 29/389 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F S Y  G TP P + CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D      +M RP D  +DQ+YFL   +Q+Q+  + FPL ++ K  V
Sbjct: 124 IAMGHYAKT---VKDKNGVTHMM-RPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G H+G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   + +IV   +  +  R+Y   +   G   +
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIV--EQGYDSPRLYATSLKASGMSFY 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  V+ F C  K R  Q  V V V+ +  D    V F++    V  GQA V Y  +
Sbjct: 296 TGNPDHDVE-FDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVLYKGE 354

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400
                 LGGG I  + +    EE  L ++
Sbjct: 355 ----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|239631620|ref|ZP_04674651.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526085|gb|EEQ65086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 376

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D  +V
Sbjct: 9   NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL AD
Sbjct: 66  ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    V  D      M R  D  +DQ+YFL   +Q QL    FP+G ++K  
Sbjct: 126 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H+G+
Sbjct: 182 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 239

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +NW  
Sbjct: 240 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 299

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                 A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY  D
Sbjct: 300 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 355

Query: 372 SNEARVLGGGIISGS 386
                 LGGG I  +
Sbjct: 356 ----ECLGGGTIDAA 366


>gi|257892743|ref|ZP_05672396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,408]
 gi|257829122|gb|EEV55729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,408]
          Length = 373

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + N V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   +   N   A +G++V L+G++ G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   EI++  + 
Sbjct: 239 YTIGQRQGLGIGGGGNSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY    +
Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + +   V
Sbjct: 351 GMECLGGGLIDHAYQETKV 369


>gi|301065024|ref|ZP_07205369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium NaphS2]
 gi|300440873|gb|EFK05293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium NaphS2]
          Length = 363

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 191/376 (50%), Gaps = 29/376 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   ++++VA+SGGVDSS+ AA LK  G+ V G+   L +    S+++        +  
Sbjct: 9   KSSNALKILVALSGGVDSSMAAAFLKGAGHRVHGLHFVLPSPADISQKR--------ISK 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ + + + +    FD    F   +I PF  +Y  G TP PCV CN  +KF  +    + 
Sbjct: 61  AKEISEHLQIPLTTFDLRPIFETELIAPFVDAYLKGLTPNPCVRCNPLIKFEQMYRHLKT 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              D +ATGHY+R R      GK   + + R  D  +DQSYFL    Q+QL    FPLG 
Sbjct: 121 FQFDFMATGHYVRIR----RKGKNSPVTLWRGKDRLKDQSYFLHRLGQRQLAKTIFPLGH 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQI 252
           M K  +R  AR+MG+  ++  +SQ+ICF+    Y + +  ++ NA    +G I++L G+ 
Sbjct: 177 MTKTEIRFQARKMGIPSSEDPESQEICFIPNMDYRNFIESRKKNASFQ-KGPIINLKGET 235

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H+GI  YT+GQR GLG+A   P +V  L    + VIVG RE L    +   + +W+ 
Sbjct: 236 VGEHSGIHRYTVGQRHGLGIASSRPYYVKTLKPEDNCVIVGRREDLFSKGVAATDFHWIT 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYT 369
              FE   +D     V+ R      P   +   D    V   F + ++ +  GQA V Y 
Sbjct: 296 P--FEPGSLDSLSGQVRYRHK----PAGGRLEIDASRRVRFIFHRPQMAITPGQALVCYQ 349

Query: 370 SDSNEARVLGGGIISG 385
            D    RVLGGG I G
Sbjct: 350 GD----RVLGGGWIVG 361


>gi|83645146|ref|YP_433581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hahella chejuensis KCTC 2396]
 gi|123533626|sp|Q2SJL8|MNMA_HAHCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83633189|gb|ABC29156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hahella chejuensis KCTC 2396]
          Length = 364

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 26/373 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V +SGGVDSSV A LLK  GY+V G+ ++ ++    ++    C A  D+ DA++
Sbjct: 5   RNQRVIVGISGGVDSSVSAYLLKALGYEVEGLFMKNWDEDDGTE---YCTALSDLEDAQK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD + +  +   +   + + V   F   Y AG TP P + CN+ +KF   L   + LG 
Sbjct: 62  VCDKLGIKLHTASFSAEYWDRVFEHFLDEYRAGRTPNPDILCNKEIKFKAFLDYAQALGG 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY +   +    G+   +M +  D  ++QSYFL A   Q L    FP+G + K+
Sbjct: 122 DLIATGHYAQFSRF----GEHTYLM-KGADPSKEQSYFLHAVPGQALARTLFPVGGLLKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +ARE+ L   DK DS  ICF+ + K+ D +K      A  G IV   G+ +GRH G
Sbjct: 177 EVRRIARELDLITHDKKDSTGICFIGERKFSDFLKTYLP--AQPGKIVTDKGEEIGRHQG 234

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           ++ +TIGQR+GLG+         P +VV  D +++ ++V   G    L    +   +++W
Sbjct: 235 LMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQGGDHPRLFSAGLTASKLDW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           + +G+        F C+ K R  Q      V   D GV V F+K +  V  GQ+ VFY  
Sbjct: 295 I-NGV---PAKSSFSCYAKTRYRQPDQLCRVDVQDGGVRVTFDKRQRAVTPGQSVVFY-- 348

Query: 371 DSNEARVLGGGII 383
             + AR LGGG+I
Sbjct: 349 --DGARCLGGGVI 359


>gi|156934382|ref|YP_001438298.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166234851|sp|A7MFV2|MNMA_ENTS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|156532636|gb|ABU77462.1| hypothetical protein ESA_02213 [Cronobacter sakazakii ATCC BAA-894]
          Length = 369

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +           C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+     Q+    FP+G+++K  V
Sbjct: 125 IATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ + + R     A  G IV ++G  +G H G++
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDTIGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + V   F C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY 
Sbjct: 296 VD----REPVTAPFTCSVKTRYRQADIPCTVRPLDDDRIEVVFDEPVAAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|260597502|ref|YP_003210073.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter turicensis z3032]
 gi|260216679|emb|CBA30030.1| tRNA-specific 2-thiouridylase mnmA [Cronobacter turicensis z3032]
          Length = 369

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +           C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGED---YCTAASDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+     Q+    FP+G+++K  V
Sbjct: 125 IATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ + + R     A  G IV ++G ++G H G++
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDVIGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + V   F C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY 
Sbjct: 296 VD----REPVTAPFTCTVKTRYRQADIPCTVRPLDDDRIEVLFDEPVAAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|328885206|emb|CCA58445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces venezuelae ATCC 10712]
          Length = 381

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 198/379 (52%), Gaps = 26/379 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           K +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 3   KTLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 62  RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  + + + +DG R   + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 122 GFDAVCTGHY--ATVVLNEDGSRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253
             K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV   G  +
Sbjct: 178 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDEAGAKV 234

Query: 254 GRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G H G   +TIGQR+GL +    A G+P +V+ +   ++ V VGP E+L+V  +   +  
Sbjct: 235 GTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPR 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W G     +      +   ++R+      V     D  + V F++   GVA GQA V Y 
Sbjct: 295 WCGTAPEGEG-----RYTAQLRAHGGETEVTASLADGELTVSFDEPVRGVAPGQAIVLY- 348

Query: 370 SDSNEARVLGGGIISGSKR 388
              +  RV+G   I+ + R
Sbjct: 349 ---DGTRVVGSATIATTVR 364


>gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii JV-V16]
 gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii JV-V16]
          Length = 375

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 198/389 (50%), Gaps = 29/389 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F S Y  G TP P + CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++   V D      +M RP D  +DQ+YFL   +Q+Q+  + FPL ++ K  V
Sbjct: 124 IAMGHYAKT---VKDKNGVTHMM-RPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G H+G++
Sbjct: 180 REIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNHSGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   + +IV   +  +  R+Y   +   G   +
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIV--EQGYDSPRLYATSLKASGMSFY 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371
               D  V+ F C  K R  Q  V V V+ +  D    V F++    V  GQA V Y  +
Sbjct: 296 TGNPDHDVE-FDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVLYKGE 354

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400
                 LGGG I  + +    EE  L ++
Sbjct: 355 ----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|295425130|ref|ZP_06817835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295065189|gb|EFG56092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 375

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/381 (35%), Positives = 197/381 (51%), Gaps = 25/381 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G C A +D  D ++
Sbjct: 5   KKKRVVVGMSGGVDSSVSALLLKQQGYDVIGVFMKNWDD---TDDAGVCTATEDYEDVKK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L A
Sbjct: 62  VADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY ++   V D+     +M RP D  +DQ+YFL   +Q+Q+  + FPL D+ K 
Sbjct: 122 DYIAMGHYAKT---VKDENGIVHMM-RPKDGNKDQTYFLSQLSQEQIKKVIFPLADLTKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G H G
Sbjct: 178 QVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGHVVGEHAG 235

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           ++ YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y  E+      
Sbjct: 236 LMYYTIGQRQGLGLGSTKQSTDPWFVVGKDLKKNELIV--EQGYDSKLLYATELKASDMS 293

Query: 315 LF---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYT 369
            F    D  V+ F C  K R  Q  V V V+ +  ++ V V F++    V  GQA V Y 
Sbjct: 294 FFTGKPDHDVE-FHCSAKFRYRQCDVGVTVKYHAAENSVDVFFDEPARAVTPGQALVLY- 351

Query: 370 SDSNEARVLGGGIISGSKRSD 390
              N    LGGG I  + + +
Sbjct: 352 ---NGEECLGGGFIDAAYQHE 369


>gi|257467821|ref|ZP_05631917.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062110|ref|ZP_07926595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313687786|gb|EFS24621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 346

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 193/375 (51%), Gaps = 45/375 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V+ MSGGVDSSV A LLK  GY+VIGVTL   N +K           +++  A+R+CD
Sbjct: 5   KAVIGMSGGVDSSVGAYLLKEQGYEVIGVTL---NHKKEK------SLNEEIKAAQRICD 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H + D EE F+  VI  F   Y+ G TP PCV C+  VK   L     + GA  +
Sbjct: 56  FLGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDERVKMRVLFETADKEGAYFV 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  S +   ++ K R ++    D  +DQSY L+     ++  L FPL   +K+ +R
Sbjct: 116 ATGHY--SSVEYSEEFK-RDLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQIR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+ +GL++ DK DSQ ICF ++G Y + +++       +G+ +  NG I+G H G   
Sbjct: 173 EIAKNIGLEVHDKEDSQGICFAKEG-YIEFLRKNLGDKIKKGNFIDSNGNIMGEHEGYQL 231

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ +    F+  ++K  + + +G  E L   R+ L++              
Sbjct: 232 YTIGQRRGLGLKLPRAYFITKINKEKNEITIGEYEELYQKRVELKK-------------- 277

Query: 322 DGFKCFVKIRSSQDPV----PVF--------VQRNDDGVYVDFEKSEVGVASGQACVFYT 369
             FK  VKI    D      P F        +   ++ ++ +F++     A GQ  V Y 
Sbjct: 278 --FKLSVKITDILDKKIIGRPRFSSFGASGKILFENEKLFFEFDEENPQTAPGQHLVLYY 335

Query: 370 SDSNEARVLGGGIIS 384
            +     VLGGGIIS
Sbjct: 336 KN----LVLGGGIIS 346


>gi|262037400|ref|ZP_06010864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
 gi|261748562|gb|EEY35937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
          Length = 364

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 194/372 (52%), Gaps = 25/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGG+DSSV A LLK +GY+VIGVTL+      +     +CC+  D+ DA+  
Sbjct: 7   NKKVIVGMSGGIDSSVAALLLKNEGYEVIGVTLKHLPDELSENPGKTCCSLDDISDAKMT 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C T+ + HY  +  E F+  V+  F   Y  G+TP PC+ C+  VK   L+    + G  
Sbjct: 67  CYTLGIPHYTINVVEEFQKEVMDYFIKMYNEGKTPSPCIICDEKVKIKKLVDFADKTGVK 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +  +          ++    +  +DQSY L+   +  +    FPL + +K +
Sbjct: 127 YIATGHYSKKSM--------NNLLLWDENNPKDQSYMLYRLDKSVIERFLFPLSEYEKPT 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A+E G+    K DSQ ICF   G Y   +K++      +G+ +  NG+I+G H G 
Sbjct: 179 VRQIAKENGIHTHAKPDSQGICFAPDG-YISFLKKMLGDSVKKGNFIDKNGKIIGEHIGY 237

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGLG+ +G P F+  +   ++ +++G  E L +  I +  IN+     +E A
Sbjct: 238 QFYTVGQRRGLGLNLGRPFFISEIRPETNEIVIGDFEELLIDEIEI--INY--KFHYEIA 293

Query: 320 VVDGFKCFVKIRSSQ----DPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFYTSD 371
            + G +   + R S       + + +++ND+     +Y  FEK     + GQ  VFY  +
Sbjct: 294 DLIGKELTARPRFSSKGLKGKLLLKIEKNDELQKQRLYFKFEKKTHENSEGQHIVFYLDN 353

Query: 372 SNEARVLGGGII 383
                ++GGG I
Sbjct: 354 ----ELIGGGEI 361


>gi|261208073|ref|ZP_05922748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TC 6]
 gi|289565497|ref|ZP_06445945.1| tRNA methyl transferase [Enterococcus faecium D344SRF]
 gi|294615054|ref|ZP_06694941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1636]
 gi|294617680|ref|ZP_06697306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1679]
 gi|314938375|ref|ZP_07845666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a04]
 gi|314942298|ref|ZP_07849146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133C]
 gi|314951434|ref|ZP_07854484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133A]
 gi|314993154|ref|ZP_07858539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133B]
 gi|314996038|ref|ZP_07861116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a01]
 gi|260077657|gb|EEW65373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TC 6]
 gi|289162695|gb|EFD10547.1| tRNA methyl transferase [Enterococcus faecium D344SRF]
 gi|291592089|gb|EFF23711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1636]
 gi|291596054|gb|EFF27321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1679]
 gi|313589792|gb|EFR68637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a01]
 gi|313592331|gb|EFR71176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133B]
 gi|313596391|gb|EFR75236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133A]
 gi|313598915|gb|EFR77760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133C]
 gi|313642273|gb|EFS06853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a04]
          Length = 373

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   +   N   A +GD+V L+G++ G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGDMVTLDGEVKGQHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   EI++  + 
Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY    +
Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + +   V
Sbjct: 351 GMECLGGGLIDHAYQETKV 369


>gi|37526694|ref|NP_930038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81571961|sp|Q7MB22|MNMA_PHOLL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|36786126|emb|CAE15178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 367

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 197/374 (52%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQSVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLNADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   +  + R +D  +DQSYFL+  + QQ+    FP+G+++K  V
Sbjct: 125 IATGHYVRRR-----DINGKSQLLRGLDNNKDQSYFLYTLSHQQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ LG H G++
Sbjct: 180 RRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIMTVDGESLGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +V+  D  ++ +IV      PR  L    +  +++ W
Sbjct: 238 YHTLGQRKGLGIGGTKEGSEEPWYVIDKDVQNNILIVAQGHEHPR--LMSTGLIAQQLYW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +   C VK R  Q  +P  V   ++D + V F      V  GQ+ VFY 
Sbjct: 296 VD----RQTLTEKIHCVVKTRYRQQDIPCSVTPISEDKIEVHFANPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 352 GEV----CLGGGVI 361


>gi|257866681|ref|ZP_05646334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC30]
 gi|257872802|ref|ZP_05652455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC10]
 gi|257800639|gb|EEV29667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC30]
 gi|257806966|gb|EEV35788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC10]
          Length = 372

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 204/378 (53%), Gaps = 25/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D  +
Sbjct: 4   ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 61  VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +++ V ++G     M R +D  +DQ+YFL   +Q+QL    FPLG M+K 
Sbjct: 121 DYVATGHY--AQVTVDENGVTH--MLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A   GL  A K DS  +CF+ +  +   +   N   A +G++V L+G++ G+H+G
Sbjct: 177 EVRAIAERAGLATAQKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234

Query: 259 IINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           ++ YTI    G   G G A  EP FVV  D  ++ + VG      +L   R+   +I++ 
Sbjct: 235 LMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIHFT 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
            +   +D   + F C  K R  Q  VPV V+  D D   V F++    +  GQA VFY  
Sbjct: 295 TE---QDRGTE-FSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY-- 348

Query: 371 DSNEARVLGGGIISGSKR 388
             +    LGGG+I  + +
Sbjct: 349 --DGMECLGGGLIDAAYK 364


>gi|257876279|ref|ZP_05655932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC20]
 gi|257810445|gb|EEV39265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC20]
          Length = 372

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 204/378 (53%), Gaps = 25/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D  +
Sbjct: 4   ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 61  VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +++ V ++G     M R +D  +DQ+YFL   +Q+QL    FPLG M+K 
Sbjct: 121 DYVATGHY--AQVTVDENGVTH--MLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A   GL  A K DS  +CF+ +  +   +   N   A +G++V L+G++ G+H+G
Sbjct: 177 EVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234

Query: 259 IINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           ++ YTI    G   G G A  EP FVV  D  ++ + VG      +L   R+   +I++ 
Sbjct: 235 LMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIHFT 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
            +   +D   + F C  K R  Q  VPV V+  D D   V F++    +  GQA VFY  
Sbjct: 295 TE---QDRGTE-FSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY-- 348

Query: 371 DSNEARVLGGGIISGSKR 388
             +    LGGG+I  + +
Sbjct: 349 --DGMECLGGGLIDAAYK 364


>gi|226951365|ref|ZP_03821829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|226837887|gb|EEH70270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ATCC 27244]
          Length = 377

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R    + +  G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREISKTLFPVGEIEKPQV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLPAQA--GKIVLDNGKEVGEHHGLM 238

Query: 261 NYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT+GQR      G+  A     FV++ D  ++R+++G       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGVYVDFEKSEVGVASGQACVFYT 369
               ++    GF+C  K R  Q      + R   N++G+ V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 GEV----CLGGGVI 366


>gi|170288218|ref|YP_001738456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga sp. RQ2]
 gi|205828981|sp|B1L8X5|MNMA_THESQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170175721|gb|ACB08773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga sp. RQ2]
          Length = 358

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 189/369 (51%), Gaps = 20/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        K   +K  CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+  ++ V   + D  E FR  VI PF      G TP PCV CNR VKF   +      G
Sbjct: 61  RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R   + G  GK  +++ + +D ++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARVE-FSGKYGK--KVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
           E +R +A E G+ +A K +SQD+CF+  G   + +K  + GI L EG ++   G+++G H
Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLSEGKVITEKGEVVGHH 235

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G   YT+GQR+GL +   GE L+V      S+ V+V   E +    +   +  W  +  
Sbjct: 236 RGYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEDVFFSGLIAEDPVWHVE-- 293

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               V + F+C  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+   
Sbjct: 294 ----VPEEFRCVCRVRKKSEEAPAVVRVRDNEVEVRFEKKVFAVTPGQIAAFYDEDT--- 346

Query: 376 RVLGGGIIS 384
            +LGG II 
Sbjct: 347 -LLGGAIIK 354


>gi|307131188|ref|YP_003883204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii 3937]
 gi|306528717|gb|ADM98647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii 3937]
          Length = 370

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 208/381 (54%), Gaps = 33/381 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYRVEGLFMKNWEEDDDTE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + QQL    FP+G+++K  V
Sbjct: 125 IATGHYVRRKDV---DGKSR--LLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+++G H G+
Sbjct: 180 REIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMGEHQGL 237

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+        +P +VV  DK+ +  ++   +  E  R+       ++++
Sbjct: 238 MYHTLGQRKGLGIGGVKEGGDDPWYVV--DKDVANNVLYVAQGHEHPRLMSVGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  +P  +   D D + V F++    V  GQ+ VFY
Sbjct: 296 WVD----REPLTQPLRCAVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             ++     LGGGII    R+
Sbjct: 352 QGEA----CLGGGIIEERLRA 368


>gi|295402096|ref|ZP_06812056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975878|gb|EFG51496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 370

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 201/387 (51%), Gaps = 25/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     +  + R  DL +DQ+YFL   T++ L  + FPLG++ K+
Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  +   +K  N   A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLK--NFLPAQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G   V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPCTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LG  +I    + DA   ++ S
Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370


>gi|241664140|ref|YP_002982500.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12D]
 gi|240866167|gb|ACS63828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia pickettii 12D]
          Length = 370

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 195/384 (50%), Gaps = 28/384 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                A V+G     K R  Q   P  V R  DG + + F +++  V  GQ+ V Y  + 
Sbjct: 295 ----QAPVEGTDLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYDGEV 350

Query: 373 NEARVLGGGIISGSKRSDAVEESL 396
                LGGGIIS ++ +  VE+++
Sbjct: 351 ----CLGGGIISAAEPA-VVEKAI 369


>gi|332035000|gb|EGI71520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 366

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 7   IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLKDAQAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    Q LGAD
Sbjct: 64  DKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R  L   DD   + +MCR +D  +DQSYFL+  + + +    FP+GD++K  
Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVGDIEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G  +G H G+
Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGL 236

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GL +       GEP +VV  D   + ++VG     PR  L  + +   +++
Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLVVGQGKDHPR--LYSNGLNANQLH 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           W+ D +         +C VK R  Q+ +   +   +DG+  V F++ +  V  GQ+ VFY
Sbjct: 295 WV-DRVGPKGTT---RCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFY 350

Query: 369 TSDSNEARVLGGGII 383
             D      LGGGII
Sbjct: 351 AEDV----CLGGGII 361


>gi|241889855|ref|ZP_04777153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemella haemolysans ATCC 10379]
 gi|241863477|gb|EER67861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemella haemolysans ATCC 10379]
          Length = 370

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 191/372 (51%), Gaps = 25/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ +  +     +G C A +D  D  +V
Sbjct: 4   NKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVIKV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L     LGAD
Sbjct: 61  CEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +     D    R+M R +D  +DQ+YFL    Q Q+ ++ FP+G+++K+ 
Sbjct: 121 YVATGHYARVK-----DVDGERLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + + + +     A  G +V L+G + G H G+
Sbjct: 176 VRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNVRGEHIGL 233

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           ++YTIGQR GLG+       GE  F     L+ N   V  G           L       
Sbjct: 234 MHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLASSLSF- 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               ++   + F C  K R  Q    V V+   D+ V V +++    V  GQA VFY  D
Sbjct: 293 --TTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350

Query: 372 SNEARVLGGGII 383
                 LGG II
Sbjct: 351 V----CLGGAII 358


>gi|296272287|ref|YP_003654918.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096462|gb|ADG92412.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 346

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 191/366 (52%), Gaps = 33/366 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGG+DSSV A +L+++GY+V GV L+L+N       K       ++     V  
Sbjct: 6   KVMVGMSGGIDSSVTAYMLQKEGYEVEGVYLKLHNRTDGYHEK-------NLEYIEDVAA 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +++ D  ++F   V   F  SY  G TP PCV CN+ +KF  +L   ++ GA  L
Sbjct: 59  FLGIKYHILDLADKFTAEVYDYFVDSYLEGTTPNPCVKCNKQIKFGAMLDFAKEHGASYL 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DG+         D  +DQSYFL    ++ L  + FPL   KKE + 
Sbjct: 119 ATGHYAKT------DGE---FFYEADDKTKDQSYFLSQVPKEALPFMMFPLSTYKKEDIV 169

Query: 202 DLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
               E+      I +K++SQ+ICFV+   Y DVVKR +A I + G+++   G ++G H G
Sbjct: 170 KFGAELDSAYKRITEKNESQEICFVET-VYTDVVKR-HANIDVPGNVLDEKGNVIGEHKG 227

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
             +YTIG+RRG  V    EP FV  L+   + ++VG +E+LEV+ +    +N   D    
Sbjct: 228 YAHYTIGKRRGFSVNGAHEPHFVTKLNPKDNTIVVGKKEALEVNNVIADNLNMFVDE--- 284

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                   C VK+R      P  ++  D+ V +  ++   GVA+GQ  VFY    +  +V
Sbjct: 285 ----KELTCTVKLRYRTTSTPCEIKIEDNKVNISLKEPVFGVATGQLAVFY----DNQKV 336

Query: 378 LGGGII 383
           +G   I
Sbjct: 337 IGSAWI 342


>gi|134102624|ref|YP_001108285.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915247|emb|CAM05360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 348

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 186/361 (51%), Gaps = 21/361 (5%)

Query: 35  VVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDY 92
           + AA     G++V+GV L L +++  + R G+  CC  +D +DARR  D + +  YV+D+
Sbjct: 1   MAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILGIPFYVWDF 59

Query: 93  EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLY 152
            ERF   VI  F   YAAG TP PC+ CN  +KF  LL     LG D + TGHY  +RL 
Sbjct: 60  AERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTGHY--ARLT 117

Query: 153 VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
           V +DG    ++ R  D  +DQSY L + T +QL    FPLGD  K  VR  A E GL +A
Sbjct: 118 V-EDGV--PVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEAAERGLAVA 174

Query: 213 DKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NGQILGRHNGIINYTIGQRRGL 270
            K DS DICF+  G   D  K + + +  + G +V    G +LG H G+  +T+GQR+GL
Sbjct: 175 KKPDSHDICFIPDG---DTKKFLESKLGQKPGQLVDAETGAVLGEHTGVHGFTVGQRKGL 231

Query: 271 GVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           G+      G P +V+ L+  S  V VG  + L V  I  +   W      +       +C
Sbjct: 232 GIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIWPSQRELDGPT----EC 287

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V++R+         +  D G+ +   +   GVA GQA V Y  +     VLG  +I+ +
Sbjct: 288 VVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVLGSALIAAT 347

Query: 387 K 387
           +
Sbjct: 348 R 348


>gi|29829295|ref|NP_823929.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces avermitilis
           MA-4680]
 gi|81719846|sp|Q82JK2|MNMA_STRAW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29606402|dbj|BAC70464.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 376

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 191/363 (52%), Gaps = 24/363 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDV 73
           + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D 
Sbjct: 6   QRPRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDS 64

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL   
Sbjct: 65  RDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKA 124

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LG D + TGHY  +++ V +DG R   + R  D+ +DQSY L     +QL    FPLG
Sbjct: 125 LALGFDAVCTGHY--AQVIVREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHALFPLG 180

Query: 194 D--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNG 250
           D    K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +G
Sbjct: 181 DTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGKA---EGDIVDESG 237

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            ++G H G   +TIGQR+GL +      G+P +V+ +    + V VGP  +L+V  +   
Sbjct: 238 SVVGSHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPAAALDVTALTAI 297

Query: 307 EINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           +  W G      A   G   +  ++R+      V  +  D  + V F +   GVA GQA 
Sbjct: 298 KPRWCG------AAPTGPGTYTAQLRAHGGETQVTAELVDGELQVTFAEPVRGVAPGQAV 351

Query: 366 VFY 368
           V Y
Sbjct: 352 VLY 354


>gi|50955069|ref|YP_062357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71658015|sp|Q6AEE4|MNMA_LEIXX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50951551|gb|AAT89252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 366

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 189/368 (51%), Gaps = 24/368 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V+GV L L +    +   GS  CC  +D  DA+R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRLPGTLHTGSRGCCTIEDSMDAQR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I + +YV+D+ ERF   V+  F + Y+AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AANVIGIPYYVWDFSERFALDVVDDFIAEYSAGRTPNPCMRCNEKIKFAALLEKALDLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKK 197
           D + TGHY  + +    DG R   + R     +DQSY L   T  QL    FPLG    K
Sbjct: 120 DAVCTGHY--ASIVTDADGNRE--LHRASAWAKDQSYVLGVLTADQLAHSMFPLGVTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
             VR  A   GL +A K DS DICF+  G     + +R+ A     GDI+  +G  +G H
Sbjct: 176 AEVRAEAAARGLTVAAKPDSHDICFIPDGDTRGWLAERVGAET---GDILDRSGARIGTH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQR+GL +      G P FV+ +    + V+VGP+E+L++  I      W G
Sbjct: 233 EGAHAYTVGQRKGLNIGFPSPDGRPRFVLEVRPKDNTVVVGPKEALDIAEIAGARYTWAG 292

Query: 313 DGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 A  D  F C V+IR+  DPVP   +     + +  +    GVA GQ  V Y   
Sbjct: 293 T---PPASPDTPFACEVQIRAHADPVPAVARVAGGELVIRPDAPLNGVAPGQTAVVYAG- 348

Query: 372 SNEARVLG 379
               RVLG
Sbjct: 349 ---TRVLG 353


>gi|288919111|ref|ZP_06413450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EUN1f]
 gi|288349455|gb|EFC83693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EUN1f]
          Length = 358

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 194/371 (52%), Gaps = 32/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV GV L L  S  AS R GS  CC  +D  DARR
Sbjct: 7   MKVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRS-PASDRGGSRGCCTLEDARDARR 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  +RF   VI  F + YAAG TP PCV CN  +KFS +L     LG 
Sbjct: 66  AADVLGIPFYVWDLADRFEAEVIDQFVADYAAGRTPNPCVQCNERIKFSAVLDKALALGF 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +  DG  R    R +DL +DQSY L      QL   RFPLGD  K 
Sbjct: 126 DAVVTGHHAR----LDPDGTLR----RSVDLAKDQSYVLGTLRPDQLAAARFPLGDSTKA 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIV-HLNGQILGRH 256
            VR+ A   GL +ADK DS DICFV  G     ++ R+       G IV    G+ LG H
Sbjct: 178 QVREEAARRGLGVADKPDSHDICFVAAGDTGAWLRDRLG---PRPGPIVDSETGETLGEH 234

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   +T+GQRRGL +      G P +V+ +   +S V VGP  +L++  +    I W  
Sbjct: 235 DGAYAFTVGQRRGLRLGHPAPDGRPRYVLEVSPVTSTVTVGPARALDMRSLVAERIVWPH 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +G           C  ++R+    VP  V+   + + V   +   G A+GQA VFY  D 
Sbjct: 295 EGP--------VSCVAQVRAHGGVVPAVVRARGEELDVQLVEPVRGTAAGQAVVFYDGD- 345

Query: 373 NEARVLGGGII 383
              RVLGGG I
Sbjct: 346 ---RVLGGGRI 353


>gi|270261459|ref|ZP_06189732.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
 gi|270044943|gb|EFA18034.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 204/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV+++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVNVDGQTVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHDHPR--LMSTGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           + D L    +    +C VK R  Q  +P  V   DD  + V F++    V  GQ+ VFY 
Sbjct: 296 V-DRL---PLSGPLRCTVKTRYRQQDIPCTVTPLDDQRIEVRFDEPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 DEI----CLGGGIIE 362


>gi|269119363|ref|YP_003307540.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
 gi|268613241|gb|ACZ07609.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
          Length = 353

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 187/363 (51%), Gaps = 17/363 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSS  A  LK+ GY+VIG+TL+      +     +CC+  D+ DA+ VC 
Sbjct: 4   KVIVGMSGGVDSSAAALFLKKQGYEVIGITLKHLPDELSENGGKTCCSIDDITDAKNVCS 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HY  D  E F+  V+  F   Y  G+TP PCV C+  +K   L  +  ++GA+ +
Sbjct: 64  HLEIPHYTIDVSEEFKKEVMDYFIKMYNEGKTPSPCVICDEKIKIKKLAEIADKMGAEYI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY    L      + + I  R  +  +DQ+Y L+      L  + FPL    K+ +R
Sbjct: 124 ATGHYSGKTL------ENKLIWDR--ENTKDQTYMLYRLDTGILSRMLFPLSGYNKKEIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++ +E G+ I  K DSQ ICF  +G Y D +K     +  EG     NG +LG+H G   
Sbjct: 176 EIVKEAGIRIHSKPDSQGICFAPKG-YEDFLKGSKEIVIKEGLFKDKNGNVLGKHKGYQL 234

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQRRGLG+ +G+  F+  +    + +I+G  E  ++ +  ++ IN+  +   E+   
Sbjct: 235 FTVGQRRGLGINLGKMYFITDIIPEENLIILG--EFQDLMKKSVKVINYKFNTELENTA- 291

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            G K   + R S   +   +   D  VY  F+      A GQ  VFY  D     ++GGG
Sbjct: 292 -GKKITARPRFSSKGLTGEIITKDKEVYFVFDNENAENAEGQHIVFYLDDV----LIGGG 346

Query: 382 IIS 384
            I+
Sbjct: 347 EIA 349


>gi|282881825|ref|ZP_06290478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus lacrimalis 315-B]
 gi|281298317|gb|EFA90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus lacrimalis 315-B]
          Length = 351

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 189/373 (50%), Gaps = 30/373 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +         G C A +D  D  +
Sbjct: 2   KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWAD------DGVCTATEDYMDVVK 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + ++  ++EE +RN V   F + Y  G TP P V CN  +KF   L+       
Sbjct: 56  VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R++     DGK    +CR +D  +DQSYFL   T+  L    FP+G+++K+
Sbjct: 116 DYIAMGHYARTK---NIDGK--TYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A++ GL  A K DS  ICF+ +  +   + +        G IV + G +LG H+G
Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQF--LFTKPGKIVDIQGNVLGEHSG 228

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL- 311
           +I+YTIGQRR     G   GEP FV   D  ++ +IV   E   +L      + ++ W+ 
Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G   F        K  VKIR         ++ N+   +V  +    GV  GQ  VFY   
Sbjct: 289 GQPHFP------LKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFY--- 339

Query: 372 SNEARVLGGGIIS 384
            N+   LG GII 
Sbjct: 340 -NDEICLGSGIIK 351


>gi|238754412|ref|ZP_04615768.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
 gi|238707445|gb|EEP99806.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
          Length = 371

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW---EEDDNEEYCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       D   +  + R +D  +DQSYFL+     QL    FP+G+++K  V
Sbjct: 125 IATGHYVRRH-----DVNGKSQLLRGLDSNKDQSYFLYTLGHDQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A  + L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ LG H G++
Sbjct: 180 RRIAETLDLVTAKKKDSTGICFIGERKFRDFLARYLP--AQPGQILSVDGQYLGEHQGLM 237

Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNVLVVAQGHEHPR--LMSTGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +        V+  F+C VK R  Q  +P  V   DD  + V F++    V  GQ+ VFY 
Sbjct: 296 VD----RQTVIAPFRCVVKTRYRQQDIPCTVTPLDDERIDVCFDQPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 269-3]
 gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932449|ref|ZP_06337874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
 gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 1153]
 gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 269-3]
 gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 1153]
 gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303398|gb|EFA95575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 196/389 (50%), Gaps = 29/389 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D +RV 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKRVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ +   V   F S Y  G TP P + CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ K  V
Sbjct: 124 IAMGHYAKTV----KDANGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A + GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G+H G++
Sbjct: 180 REIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGQHGGLM 237

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+   +    P FVV  D   + +IV   +  +  R+Y   +   G   +
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIV--EQGYDSPRLYATSLKASGMSFY 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSD 371
               D  V+ F C  K R  Q  V V V+ +      D  F++    V  GQA V Y  +
Sbjct: 296 TGNPDHDVE-FDCTAKFRYRQADVGVHVKYHAATKTCDVYFDEPARAVTPGQALVLYKGE 354

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400
                 LGGG I  + +    EE  L ++
Sbjct: 355 ----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|269139398|ref|YP_003296099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda EIB202]
 gi|267985059|gb|ACY84888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda EIB202]
 gi|304559294|gb|ADM41958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda FL6-60]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +    + +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  RLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G+++K  V
Sbjct: 125 IATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G+ +G H G++
Sbjct: 180 RRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D +++ ++V      PR  L  + +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPR--LFSNGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  +P  V   +DD + V F++    V  GQ+ VFY 
Sbjct: 296 VD----RRPLGAPLRCTVKTRYRQADIPCLVTPLSDDRIAVRFDQPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 DEV----CLGGGIIE 362


>gi|302344576|ref|YP_003809105.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfarculus baarsii DSM 2075]
 gi|301641189|gb|ADK86511.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfarculus baarsii DSM 2075]
          Length = 340

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 182/350 (52%), Gaps = 24/350 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ VA+SGGVDS+V A +L+R G++VIG+TL L     A  R+        + +A     
Sbjct: 3   RIAVALSGGVDSTVAALMLRRAGHEVIGLTLAL----GAGPRRA-------LTEAAEAAR 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++H V D    F  AVI P A +YAAG TP PC  CN  +K   L    +  G   L
Sbjct: 52  ALGLTHQVIDVAAAFERAVIAPAARAYAAGRTPNPCAVCNAALKIPALWRAAQAFGCQAL 111

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     R ++ R  D  + Q+YFL       L  L FPLG + K+ VR
Sbjct: 112 ATGHYARLARLGG-----RPVLARAADAAKSQAYFLARLRPALLERLIFPLGGLTKDEVR 166

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +ARE GL  A +++SQD CF+  G + +++ R   G+   G I    G+++G+H G+  
Sbjct: 167 RVARESGLAAAQRAESQDGCFLPPGGWDELIGR--RGLTRPGPIEDAAGRVIGQHGGLHR 224

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQRRGLG+A+G P +V+ LD   + V VGP+E+L     +     W       DA+ 
Sbjct: 225 FTVGQRRGLGLALGRPTYVLSLDGARAAVRVGPKEALVTGGFWGGAAMWNAT-PGADAIY 283

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           D      ++R +       V+R  D   VDF   +  VA GQ  VF+  D
Sbjct: 284 D-----CRVRYAAQGAACRVERQGDLWRVDFNSPQGAVAPGQLAVFFLDD 328


>gi|153835174|ref|ZP_01987841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi HY01]
 gi|148868331|gb|EDL67456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi HY01]
          Length = 374

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          +P FV    L++N    + G     L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 DDV----CLGGGIIE 366


>gi|297626267|ref|YP_003688030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922032|emb|CBL56594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 357

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/356 (37%), Positives = 190/356 (53%), Gaps = 27/356 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV VA+SGGVDS+V AA +   G++ +GV L L        R           DAR V 
Sbjct: 1   MRVAVALSGGVDSAVTAARVVEAGHEAVGVHLLLGAGSVPETR-----------DARGVA 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +   V+D  +RF + V+  F SSYAAG TP PC+ CNR VKF  LLS   + G D 
Sbjct: 50  DAVGIPLVVWDLRDRFEHRVLDYFTSSYAAGRTPNPCLRCNREVKFRGLLSRGIEEGFDA 109

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199
           +ATGHY  +RL    DG     + R  ++ +DQSY L   +Q  L    FPLG +  K+ 
Sbjct: 110 VATGHY--ARLQPARDGSIG--LHRAANVRKDQSYVLGVLSQDDLRHCLFPLGTVTTKDE 165

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR+ A   GL +A K DS DICFV +G   + +    A    +GDIV   G +LG H+GI
Sbjct: 166 VREEAERRGLPVAHKPDSTDICFVTEGGAAEFLAGRLAD--RQGDIVDARGTVLGTHHGI 223

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            ++T+GQR+GLG+      G+P +V  LD  ++ V VG    L V ++ + +++  G  L
Sbjct: 224 QHFTVGQRKGLGLRRPADDGKPRYVTALDAATNTVHVGQGRELLVGQVDVEDLSDTGTAL 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                   ++  V+ R+    VP  ++  D  + V F +   GVA GQ  VFY +D
Sbjct: 284 GPH-----WRGLVQFRAHGRAVPARLEEADGQLRVHFAEPVSGVAPGQFIVFYDAD 334


>gi|294650884|ref|ZP_06728231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292823302|gb|EFF82158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 377

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R    + +  G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPQV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLPAQA--GKIVLDNGKEVGEHHGLM 238

Query: 261 NYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT+GQR      G+  A     FV++ D  ++R+++G       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGVYVDFEKSEVGVASGQACVFYT 369
               ++    GF+C  K R  Q      + R   N++G+ V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 GEV----CLGGGVI 366


>gi|331695625|ref|YP_004331864.1| tRNA-specific 2-thiouridylase mnmA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950314|gb|AEA24011.1| tRNA-specific 2-thiouridylase mnmA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 359

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 208/377 (55%), Gaps = 28/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +  A  R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSETPDA-LRSGSRGCCSREDADDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +++  YV+D+   F   V+  F ++YAAG TP PCV CN  +KF+ LL     LG 
Sbjct: 60  AADVLDIPFYVWDFAAPFSAGVVDDFVAAYAAGRTPNPCVRCNERIKFAALLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +RL  G       ++ R +D  +DQSY L   T  QL    FP+GD  K 
Sbjct: 120 DAVCTGHY--ARLSNG-------VLRRAVDDGKDQSYVLAVLTPFQLAHALFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIV-HLNGQILGR 255
            VR  A E GL +ADK DS DICF+  G  + F + +R+    A  G IV  ++G+++G 
Sbjct: 171 QVRAEAAERGLRVADKPDSHDICFIPSGDTRAF-LAERLG---ARPGPIVDAVSGEVIGD 226

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G+  +T+GQR+G+GV    A G P +V+ ++  S+ V VGP E+L+V  I      W 
Sbjct: 227 HAGVHGFTVGQRKGIGVDRPAADGRPRYVLGIEPVSATVTVGPAEALDVREIDTETPVW- 285

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
           G G   D  V    C V++R+     P        DG++V+  +   GVA GQ+  FY  
Sbjct: 286 GCGTAPDGPV---SCVVQVRAHGGLAPATAWPTARDGLHVELGEPLRGVAPGQSAAFYRP 342

Query: 371 DSNEARVLGGGIISGSK 387
           D     VLG  +IS ++
Sbjct: 343 DPGGDVVLGSAVISAAR 359


>gi|261856534|ref|YP_003263817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothiobacillus neapolitanus c2]
 gi|261837003|gb|ACX96770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothiobacillus neapolitanus c2]
          Length = 377

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 198/380 (52%), Gaps = 24/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P+D RV+V +SGGVDSSV A  L   GY V G+ ++ +   +       C A  D+ D
Sbjct: 7   KRPQDTRVIVGLSGGVDSSVAALRLIEAGYQVEGLFMKNW---EGDDNDEYCAAKADMLD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V D + +  +  ++ + + + V   F   Y AG TP P + CNR +KF   L   R 
Sbjct: 64  ALSVADRLGIEFHFVNFAQDYWDRVFAHFLDEYRAGRTPNPDILCNREIKFRAFLDHART 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R +  + DD      + + +D  +DQSYFL A +++QL    FP+G+M
Sbjct: 124 LGADYIATGHYARVQHALPDDSG-ETCLLKGLDANKDQSYFLHALSREQLASALFPIGEM 182

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + G   A K DS  ICF+ + ++ + +K      A  GDIV ++GQ++G+
Sbjct: 183 EKPEVRRIAEQAGFKTATKKDSTGICFIGERRFSEFLKTYLP--AQPGDIVTVDGQVVGQ 240

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +TIGQR+GLG+        +P +V   +   + +IV       +L    +   +
Sbjct: 241 HQGLMYHTIGQRQGLGIGGLRDQGDQPWYVAGKNLGDNTLIVAQGQDHPALFAPALRAGQ 300

Query: 308 INWLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           I+W+ D      +V  +  +   KIR  Q   P  V   + D + V F++ +  +  GQ+
Sbjct: 301 IHWIND---PTKLVGPYPLRLTAKIRYRQPDQPCTVMTISKDQLQVVFDQPQRAITPGQS 357

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGG +I 
Sbjct: 358 IVFYHGDV----CLGGAVIE 373


>gi|300716270|ref|YP_003741073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia billingiae Eb661]
 gi|299062106|emb|CAX59222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia billingiae Eb661]
          Length = 367

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIYLHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+    +Q+    FP+G++ K  V
Sbjct: 124 IATGHYVRRQ---DVDGKSR--LLRGLDDNKDQSYFLYTLGHEQIAQSLFPVGELAKPDV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I++  G+++G H G++
Sbjct: 179 RRIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPILNAEGEVVGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D  N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKAGSEEPWYVVDKDVANNILVVAQGHEHPRLMSVGLVAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                + +    +C VK R  Q  +P  V    +D + V F++    V  GQ+ VFY  +
Sbjct: 297 ----REILTAPLRCTVKTRYRQADIPCTVTPLGEDRIEVRFDEPVAAVTPGQSAVFYLDE 352

Query: 372 SNEARVLGGGIISG 385
                 LGGGII  
Sbjct: 353 I----CLGGGIIEA 362


>gi|258404437|ref|YP_003197179.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796664|gb|ACV67601.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfohalobium retbaense DSM 5692]
          Length = 349

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 24/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           MR  VA+SGG DS      L+  G+DV+ +                     DV D  R  
Sbjct: 1   MRTAVAVSGGADSLFALLALREAGHDVLALHAHFLAPDAVDA---------DVQDRLRHC 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C T+ V   + D   +F   VI PF   YA G TP PC  CN  +KF  L    +QLG  
Sbjct: 52  CKTLGVDLEIVDLHHKFAELVITPFIEHYAQGMTPNPCALCNPRIKFGILRDAAKQLGCK 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHY+R  L    +G    ++CR  D  ++QSYFL    Q  L ++ FPLG   K +
Sbjct: 112 GFATGHYVR--LLQTPNGP---LLCRGNDPRKEQSYFLSLVPQASLDNVVFPLGTRHKST 166

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           ++    + G  I +  +SQ++CF+    Y   ++   A ++  G IV   G  LG H+G+
Sbjct: 167 IQGELEQRGFTIPESEESQEVCFIPDDDYRSFLQNTGAPLSGPGPIVDRAGNQLGHHSGL 226

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGLG+A  EPL+V+  +  S+R++VG R   +     + E+N L   L  + 
Sbjct: 227 WRYTLGQRRGLGIAYSEPLYVIDKEIRSNRLVVGTRAERQATGCSVHELNTL---LPFEK 283

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             D  + +V+    Q PVP  ++  ++ G+ + F + +   A GQ   FYT+   +  VL
Sbjct: 284 WPD--QIWVQTNYRQQPVPCRIRIVSETGMEISFLEPKGPAAPGQVAAFYTA---KGYVL 338

Query: 379 GGGIISGSKRS 389
           GGGII  S R+
Sbjct: 339 GGGIIHDSTRT 349


>gi|71065801|ref|YP_264528.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter arcticus 273-4]
 gi|123648512|sp|Q4FSB4|MNMA_PSYA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71038786|gb|AAZ19094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter arcticus 273-4]
          Length = 408

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 212/394 (53%), Gaps = 24/394 (6%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +A R  +L    NP    V+V MSGGVDSSV A LL++ G+ V G+ ++ +     ++  
Sbjct: 17  DAHRPLTLTYIDNPSTKHVIVGMSGGVDSSVSAVLLQQAGFVVEGLFMKNWEEDDGTEY- 75

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             C A  D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CN+ +
Sbjct: 76  --CTAMDDLADAQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNKEI 133

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           KF   L     LGAD +ATGHY R  + Y  +DG     + R +D  +DQSYFL A    
Sbjct: 134 KFKAFLDYALTLGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAVGGD 193

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           +L    FP+G+++K  VR +A E  L  A+K DS  ICF+ + ++ D +++     A +G
Sbjct: 194 KLAKTLFPVGELEKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--AQKG 251

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PR 295
           DIV  +G  +G H+G++ YT+GQR G+G+        EP FV+  D +++R+IVG     
Sbjct: 252 DIVTDDGINIGTHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQGHEH 311

Query: 296 ESLEVHRIYLREINWLGDGLFEDAV--VDGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYV 350
             +  + ++  +++W  DGL    +  ++G +C  K R  Q D        N DG  V V
Sbjct: 312 PMMLSNELHAYKLDWT-DGLPPTDIFSLEGLRCMAKSRYRQPDQACRVFAVNADGSEVRV 370

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++ +  V  GQ+ VFY     E   LGGG+I+
Sbjct: 371 IFDEPQRAVTPGQSAVFYI----EEVCLGGGVIA 400


>gi|146293329|ref|YP_001183753.1| tRNA-specific 2-thiouridylase MnmA [Shewanella putrefaciens CN-32]
 gi|166235082|sp|A4Y7M1|MNMA_SHEPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145565019|gb|ABP75954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella putrefaciens CN-32]
          Length = 372

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 200/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHQV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + ++      A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLRTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|257897740|ref|ZP_05677393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com15]
 gi|257835652|gb|EEV60726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com15]
          Length = 373

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   +   N   A +G++V L+G+I G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEIKGQHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   EI++  + 
Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY    +
Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + +   V
Sbjct: 351 GMECLGGGLIDHAYQETKV 369


>gi|163801953|ref|ZP_02195849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. AND4]
 gi|159174094|gb|EDP58902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. AND4]
          Length = 374

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 204/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++GK+ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYVRRSF--PENGKKPQ-MLRGLDSNKDQSYFLYTLSNEQIARSLFPVGNLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINW 310
            +T+GQR+GL +          +P FV   D K +  + V  ++   L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q+ +P   V  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIVPIDDENIKVIFDEPQIAVTPGQSAVFYE 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 GDV----CLGGGIIE 366


>gi|309781297|ref|ZP_07676033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia sp. 5_7_47FAA]
 gi|308919710|gb|EFP65371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia sp. 5_7_47FAA]
          Length = 370

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 194/384 (50%), Gaps = 28/384 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  +    D  +DQSYFL    Q QL    FPLG+M K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLTAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                A V+G     K R  Q   P  V R  DG + + F +++  V  GQ+ V Y  + 
Sbjct: 295 ----QAPVEGTNLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYDGEV 350

Query: 373 NEARVLGGGIISGSKRSDAVEESL 396
                LGGGIIS ++ +  VE+++
Sbjct: 351 ----CLGGGIISAAEPA-VVEKAI 369


>gi|262376077|ref|ZP_06069308.1| tRNA methyl transferase [Acinetobacter lwoffii SH145]
 gi|262309171|gb|EEY90303.1| tRNA methyl transferase [Acinetobacter lwoffii SH145]
          Length = 379

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 25/375 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVNLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYCRRGETMTNSRGEEYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPQV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  +G+ +G H+G++
Sbjct: 181 RKIAEELDLVTAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLEDGKEVGDHHGLM 238

Query: 261 NYTIGQRRGL------GVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311
            YT+GQR G+      GVA G   FV++ D   +R++VG       ++   ++   I+W+
Sbjct: 239 YYTLGQRGGIGIGGMKGVAEG-AWFVLHKDIEGNRLVVGQGHEHPLMQSTTLWSEAIDWV 297

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFY 368
                +D    GF+C  K R  Q      V ++ +   GV V+F++ +  V  GQ+ VFY
Sbjct: 298 AGE--QDIPETGFRCTAKTRYRQTDQACTVYQDSESPNGVRVEFDEPQRAVTPGQSVVFY 355

Query: 369 TSDSNEARVLGGGII 383
           + +      LGGG+I
Sbjct: 356 SGEV----CLGGGVI 366


>gi|312194884|ref|YP_004014945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EuI1c]
 gi|311226220|gb|ADP79075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EuI1c]
          Length = 359

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 149/373 (39%), Positives = 198/373 (53%), Gaps = 34/373 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V GV L L  S  A +R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHEVTGVHLALSRSPDA-ERTGARGCCTVEDARDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  +RF   VI  F ++YAAGETP PCV CN  +KFS +L     LG 
Sbjct: 60  AADVLGIPFYVWDLADRFETDVIADFVAAYAAGETPNPCVRCNERIKFSAVLGRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +  DG    ++ R +D  +DQSY L     +QL    FPLGD  K 
Sbjct: 120 DAVVTGHHAR----LSADG----VLRRSVDPAKDQSYVLGTLRPEQLRRAIFPLGDSTKA 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIV-HLNGQILGRH 256
            VR  A   GL +ADK DS DICFV  G     ++ R+    A  G IV    G+ LG H
Sbjct: 172 QVRAEAAARGLGVADKPDSHDICFVPSGDTGAWLRDRLG---AKPGPIVDAATGETLGAH 228

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   +T+GQRRGL +      G P +V+ +   +S V VGP ESL+V R+      W  
Sbjct: 229 DGTFAFTVGQRRGLRLGRPAPDGRPRYVLDISPVTSTVTVGPAESLDVWRLVADAGVW-- 286

Query: 313 DGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 A  +G   +C  ++R+  D VP   + +   + ++      G A+GQA V Y  
Sbjct: 287 ------AAPEGVDVECLAQVRAHGDAVPAVARADGGELSIELRAPVRGTAAGQAVVLYDG 340

Query: 371 DSNEARVLGGGII 383
           D    RVLGGG I
Sbjct: 341 D----RVLGGGHI 349


>gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121]
 gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121]
          Length = 377

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 205/391 (52%), Gaps = 26/391 (6%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+    T  N++   KN K   V+V MSGGVDSSV A LL + GY V G+ ++ ++    
Sbjct: 1   MITETNTPENTIHSIKNTK---VIVGMSGGVDSSVSALLLIQQGYQVEGLFMKNWDEDDG 57

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           ++    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 58  TEY---CTAKDDLADAQSVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILC 114

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+ +KF   L     LGAD +ATGHY+R      DD + +  + + +D  +DQSYFL+A 
Sbjct: 115 NKEIKFKAFLEYANALGADYIATGHYVRR---THDDNQAK--LLKGLDNNKDQSYFLYAV 169

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
            + ++    FP+G+++K  VR LA+E  L   +K DS  ICF+ + ++ D +++     A
Sbjct: 170 GKDEIAKSLFPVGELEKPEVRRLAQEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--A 227

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGP 294
             GDI  L G  +GRH+G++ +TIGQR+GLG+        EP +VV  D  N+  ++   
Sbjct: 228 QPGDIKTLEGDTIGRHSGLMYHTIGQRQGLGIGGLANYSDEPWYVVEKDLDNNVLLVTQS 287

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFE 353
            +   +++ +L   N   D +   A      C  K R  Q      +  N DG + V F 
Sbjct: 288 SDDKPLYKTHLNASNM--DWVARVAPELPLTCKAKCRYRQADQDCTISANPDGSIEVSFV 345

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +++  +  GQ+ VFY  +      LGGGII+
Sbjct: 346 EAQRAITPGQSVVFYLDE----ECLGGGIIN 372


>gi|156974113|ref|YP_001445020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi ATCC BAA-1116]
 gi|166235090|sp|A7MSW1|MNMA_VIBHB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|156525707|gb|ABU70793.1| hypothetical protein VIBHAR_01824 [Vibrio harveyi ATCC BAA-1116]
          Length = 374

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLDIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R +  +D K +  M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVR-RSFPENDEKPQ--MLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          +P FV    L++N    + G     L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGG II 
Sbjct: 356 DDV----CLGGSIIE 366


>gi|269967776|ref|ZP_06181823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 40B]
 gi|269827596|gb|EEZ81883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 40B]
          Length = 430

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 64  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 120

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 121 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 180

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 181 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 237

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 238 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 295

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          +P FV    L++N    + G     L+   +   +++W
Sbjct: 296 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 355

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 356 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 411

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 412 GDV----CLGGGIIE 422


>gi|255327012|ref|ZP_05368088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia mucilaginosa ATCC 25296]
 gi|255296229|gb|EET75570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia mucilaginosa ATCC 25296]
          Length = 407

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/396 (36%), Positives = 197/396 (49%), Gaps = 44/396 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + +  +V+D+ ERF+  V+  F S Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCSQLGIPFFVWDFSERFKEDVVDDFISEYEAGRTPNPCMRCNEKIKFAALLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY  +R+   +DG R   + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVVTGHY--ARVITTEDGNRE--LHRAADWAKDQSYVLGVLTHEQLKHAWFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
             VR  A E G  +A K DS DICF+ +G   D    +   I +  G I   +G++LG H
Sbjct: 176 AQVRAEAAERGFSVAKKPDSYDICFIPEG---DTRAWLGDHITMRPGLIKDTHGEVLGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQR+GL +    A G+P FV+ +    + VIVG RE L VH I      W G
Sbjct: 233 PGAQAYTVGQRKGLALGRPAADGKPRFVLEVRPKENEVIVGSRELLAVHEIRGIRATWAG 292

Query: 313 DGLFEDAVV-----------DGFKCFVKIRSSQDPVPVFV--------QRNDDGVY---- 349
             + + A             + F+   ++R+  DPV            +  ++G      
Sbjct: 293 IPVEQAARFLEEPAQLGARSEEFEVTAQVRAHADPVRAKAYMTWAPDPEAEEEGALRLET 352

Query: 350 -VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V       GVA GQ  V Y       RVLG   I+
Sbjct: 353 VVRLLDPLSGVAPGQTMVLYQG----TRVLGQSTIA 384


>gi|91226036|ref|ZP_01260963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 12G01]
 gi|91189477|gb|EAS75754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 12G01]
          Length = 374

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 28/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
            +T+GQR+GL +          +P FV    L++N    + G     L+   +   +++W
Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + D  KC VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ VFY 
Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 356 GDV----CLGGGIIE 366


>gi|90021322|ref|YP_527149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharophagus degradans 2-40]
 gi|123090544|sp|Q21K42|MNMA_SACD2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89950922|gb|ABD80937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharophagus degradans 2-40]
          Length = 380

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 197/383 (51%), Gaps = 24/383 (6%)

Query: 15  DKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           D  P  ++ V+V MSGGVDSSV A LLK+ GY V G+ ++ ++    ++    C A  D+
Sbjct: 12  DPRPANEITVIVGMSGGVDSSVSALLLKQQGYKVEGLFMKNWDEDDGTE---YCTAMTDL 68

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  VC  +++  +  ++  ++ + V   F   Y A  TP P + CNR +KF   L   
Sbjct: 69  MDAAAVCQKLDIHLHTANFARQYWDNVFEYFLEEYKACRTPNPDILCNREIKFKVFLEYA 128

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGAD +ATGHY R+  + G    R+      +D  +DQSYFL A  +Q+     FP+G
Sbjct: 129 KKLGADYIATGHYTRTSQHEGCTQLRKG-----LDPNKDQSYFLHAVGEQEFAQTLFPIG 183

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR +A E GL   +K DS  ICF+ + ++ D ++      A  G IV  NG  +
Sbjct: 184 DIEKPQVRAIAEERGLVTHNKKDSTGICFIGERRFKDFLETYLP--AQPGVIVDENGVEI 241

Query: 254 GRHNGIINYTIGQRRGLGVA--MGEPLFVVY-----LDKNSSRVIVGPRESLEV-HRIYL 305
           G+H G++ +TIGQR+GLG+    G P    Y     L  N   V+ G    L   + +  
Sbjct: 242 GKHQGLMYHTIGQRQGLGIGGVPGRPEAPWYVAEKRLQTNQLVVVQGSNHPLLFSNELTT 301

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             ++W+   L    + + F+C  K R  Q      +  N DGV   F++ +  V  GQ+ 
Sbjct: 302 GAMHWINPRL-APTLSEPFRCTAKTRYRQPEQWCTLTANGDGVIAVFDEPQRAVTPGQSA 360

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  D      LGG +I  +++
Sbjct: 361 VFYQGDI----CLGGAVIETTRK 379


>gi|258621706|ref|ZP_05716737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM573]
 gi|258626348|ref|ZP_05721195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM603]
 gi|262171838|ref|ZP_06039516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus MB-451]
 gi|258581400|gb|EEW06302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM603]
 gi|258585937|gb|EEW10655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM573]
 gi|261892914|gb|EEY38900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus MB-451]
          Length = 371

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 244 YHTLGQRKGLHIGGMKESNEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 302 VD----RTPITEPLRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 357

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 358 GEI----CLGGGIIE 368


>gi|281411738|ref|YP_003345817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga naphthophila RKU-10]
 gi|281372841|gb|ADA66403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga naphthophila RKU-10]
          Length = 358

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 189/370 (51%), Gaps = 22/370 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDA 76
           M+V VA+SGGVDS+V   LL ++G++V    ++     +  RK  K+K  CC+  D  DA
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKK-VCCSPSDTADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R+   + V   + D +E FR  VI PF      G TP PC  CNR VKF  L+      
Sbjct: 60  MRIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQ 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D  A+GHY R       +   R+++ + +DL++DQSYFL      ++  L FP G   
Sbjct: 120 GFDAFASGHYARIEF---SEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYT 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGR 255
           KE +R +A E G+ +A K +SQD+CF+  G   + +K  + GI L +GDI+   G+++GR
Sbjct: 177 KEEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLKDGDIITPEGEVVGR 234

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G   YTIGQR+G  +   G   +V       + V+V   E +    +   +  W  + 
Sbjct: 235 HFGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE- 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                V + F+C  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+  
Sbjct: 294 -----VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVRFEKKVFAVTPGQIAAFYDGDT-- 346

Query: 375 ARVLGGGIIS 384
             +LGG II 
Sbjct: 347 --LLGGAIIK 354


>gi|239944472|ref|ZP_04696409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|239990930|ref|ZP_04711594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 11379]
 gi|291447937|ref|ZP_06587327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|291350884|gb|EFE77788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 15998]
          Length = 378

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 200/384 (52%), Gaps = 26/384 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  + + + +DG R   + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHY--ATVVLTEDGSRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDI+  +G  LG
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGGPA-EGDILDESGTKLG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTSLTAIKPRW 300

Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            G          G   +  ++R+      V  +  D   + V F +   GVA GQA V Y
Sbjct: 301 CG------TPPSGPGTYTAQLRAHGGETEVTAELVDGSELNVTFTEPVRGVAPGQAVVLY 354

Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392
               +  RV+G   I+ + R + V
Sbjct: 355 ----DGTRVVGSATIATTVRRERV 374


>gi|148652768|ref|YP_001279861.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter sp. PRwf-1]
 gi|205816892|sp|A5WE20|MNMA_PSYWF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148571852|gb|ABQ93911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter sp. PRwf-1]
          Length = 398

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 24/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           NP   RVVV MSGGVDSSV A LL++ G+ V G+ ++ +     ++    C A +D+ DA
Sbjct: 24  NPAQTRVVVGMSGGVDSSVSAVLLQQAGFQVEGLFMKNWEEDDGTEY---CTAMEDLADA 80

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I ++ +  ++   + + V   F + Y AG TP P + CN+ +KF   L     L
Sbjct: 81  QAVCDKIGINLHTANFAMEYWDRVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYAVTL 140

Query: 137 GADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GAD +ATGHY R  + Y  +DG     + R +D  +DQSYFL A    ++    FP+G++
Sbjct: 141 GADYIATGHYTRRSVNYTREDGLEVAHLMRGLDNNKDQSYFLHAVGGDKIAKTLFPVGEL 200

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + ++ D +++     A  G+IV  +G  +G+
Sbjct: 201 EKPEVRRIAEEHDLITAKKKDSTGICFIGERRFKDFLQQYLP--AKPGNIVTDDGITIGK 258

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ YT+GQR G+G+        EP FV+  D +++ +IVG       L   R+   +
Sbjct: 259 HDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLQKDLSNNELIVGQGHDHPMLLSQRLTAYK 318

Query: 308 INWLGDGLFEDAVV--DGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDFEKSEVGVASG 362
           ++W+ + +   A+    G KC  K R  Q D        +DDG  V V F++ +  V  G
Sbjct: 319 LDWV-ERIAPAAIFSEQGLKCMAKTRYRQPDQSCTVFADSDDGSRVKVIFDEPQRAVTPG 377

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ VFY  +      LGGG+I
Sbjct: 378 QSAVFYIGEV----CLGGGVI 394


>gi|189501011|ref|YP_001960481.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium phaeobacteroides
           BS1]
 gi|229486338|sp|B3EN11|MNMA_CHLPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189496452|gb|ACE05000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeobacteroides BS1]
          Length = 359

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 202/368 (54%), Gaps = 29/368 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+V +SGGVDS+V A +L  +GY V G+ ++ L +S  +   + S     D  + R    
Sbjct: 8   VIVGISGGVDSAVAACILIENGYRVTGLHIKVLDHSDDSLHLEKSPLIISDRKEFRFPVF 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++N+S         FR  VI  F   Y +G TP PC+ CN+ +K+  LL     L A ++
Sbjct: 68  SLNLSG-------SFRRDVIDYFLQDYLSGRTPNPCMVCNKLIKWKGLLKGADLLQATLV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D G+ +  + +  D ++DQSYFL+  + ++L     P+G++ K+ VR
Sbjct: 121 ATGHYARI-----DCGREKCRLLKGTDSQKDQSYFLWMLSSEELSKTLLPVGNLTKQEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258
           +LAR  G+  A+K +SQ+ICFV    Y +VVK    G+A +   G+I+   G+++G H G
Sbjct: 176 ELARRFGVRAAEKKESQEICFVPDNDYREVVKSSRPGLAEKLTGGEIIDTEGKVIGHHAG 235

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQR+GLG++  EPL+V  LD   +R+ VG +  L+  ++   ++NW G    E 
Sbjct: 236 YPFYTIGQRKGLGISSPEPLYVNRLDPEKNRIRVGGKAMLQCRKLIAGQMNWTGISPPET 295

Query: 319 AVVDGFKCFVKIRSSQDP---VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +     +  ++ R + +    VPV  +R +    V F+K +  V  GQA VFY  D    
Sbjct: 296 STRAAAR--IRYRDTGEACTIVPVEKERFE----VIFDKPKQSVTPGQAVVFYRDDE--- 346

Query: 376 RVLGGGII 383
            V+GGGII
Sbjct: 347 -VIGGGII 353


>gi|253688256|ref|YP_003017446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259495833|sp|C6DFW7|MNMA_PECCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|251754834|gb|ACT12910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 368

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 201/376 (53%), Gaps = 33/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       DGK R  + R MD  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ + + + +G+H G+
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237

Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309
           + +T+GQR+GLG+      GE P +VV  D  ++ + V      PR  L  H +  ++++
Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPR--LMSHGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+        +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ VFY
Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGGII 
Sbjct: 352 LDDV----CLGGGIIE 363


>gi|69244797|ref|ZP_00603021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium DO]
 gi|257879151|ref|ZP_05658804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,230,933]
 gi|257882042|ref|ZP_05661695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,502]
 gi|257883775|ref|ZP_05663428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,501]
 gi|257889981|ref|ZP_05669634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,410]
 gi|258615538|ref|ZP_05713308.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecium DO]
 gi|260560202|ref|ZP_05832379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium C68]
 gi|293553765|ref|ZP_06674382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1039]
 gi|293563497|ref|ZP_06677945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1162]
 gi|293569057|ref|ZP_06680369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1071]
 gi|293571269|ref|ZP_06682303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E980]
 gi|294622809|ref|ZP_06701763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium U0317]
 gi|314947767|ref|ZP_07851174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0082]
 gi|68196151|gb|EAN10581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium DO]
 gi|257813379|gb|EEV42137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,230,933]
 gi|257817700|gb|EEV45028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,502]
 gi|257819613|gb|EEV46761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,501]
 gi|257826341|gb|EEV52967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,410]
 gi|260073769|gb|EEW62094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium C68]
 gi|291588238|gb|EFF20074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1071]
 gi|291597767|gb|EFF28905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium U0317]
 gi|291602058|gb|EFF32293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1039]
 gi|291604499|gb|EFF33985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1162]
 gi|291608676|gb|EFF37964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E980]
 gi|313645747|gb|EFS10327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0082]
          Length = 373

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   +   N   A +G++V L+G++ G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   EI++  + 
Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY    +
Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + +   V
Sbjct: 351 GMECLGGGLIDHAYQETKV 369


>gi|283457726|ref|YP_003362313.1| putative tRNA methyltransferase [Rothia mucilaginosa DY-18]
 gi|283133728|dbj|BAI64493.1| predicted tRNA methyltransferase [Rothia mucilaginosa DY-18]
          Length = 407

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/396 (36%), Positives = 197/396 (49%), Gaps = 44/396 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + +  +V+D+ ERF+  V+  F S Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCSQLGIPFFVWDFSERFKEDVVDDFISEYEAGRTPNPCMRCNEKIKFAALLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY  +R+   +DG R   + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVVTGHY--ARVITTEDGNRE--LHRAADWAKDQSYVLGVLTHEQLKHAWFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
             VR  A E G  +A K DS DICF+ +G   D    +   I +  G I   +G++LG H
Sbjct: 176 AQVRAEAAERGFSVAKKPDSYDICFIPEG---DTRAWLGDHITMRPGLIKDTHGEVLGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQR+GL +    A G+P FV+ +    + VIVG RE L VH I      W G
Sbjct: 233 PGAQAYTVGQRKGLALGRPAADGKPRFVLEVRPKENEVIVGSRELLAVHEIRGIRATWAG 292

Query: 313 DGLFEDAVV-----------DGFKCFVKIRSSQDPVPVFV--------QRNDDGVY---- 349
             + + A             + F+   ++R+  DPV            +  ++G      
Sbjct: 293 VPVEQAARFLEEPAQLGARSEEFEVTAQVRAHADPVRAKAYMTWAPDPEAEEEGTLRLET 352

Query: 350 -VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V       GVA GQ  V Y       RVLG   I+
Sbjct: 353 VVRLLDPLSGVAPGQTMVLYQG----TRVLGQSTIA 384


>gi|182435820|ref|YP_001823539.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776445|ref|ZP_08235710.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus
           XylebKG-1]
 gi|205828974|sp|B1VZW7|MNMA_STRGG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|178464336|dbj|BAG18856.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656778|gb|EGE41624.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 378

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 200/384 (52%), Gaps = 26/384 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  + + + +DG R   + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHY--ATVVLAEDGSRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDI+  +G  LG
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDILDESGTKLG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300

Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            G          G   +  ++R+      V  +  D   + V F +   GVA GQA V Y
Sbjct: 301 CG------TPPSGPGTYTAQLRAHGGESEVTAELVDGTELNVTFTEPVRGVAPGQAVVLY 354

Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392
               +  RV+G   I+ + R + V
Sbjct: 355 ----DGTRVVGSATIATTVRRERV 374


>gi|227552294|ref|ZP_03982343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX1330]
 gi|257895129|ref|ZP_05674782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com12]
 gi|293377883|ref|ZP_06624064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium PC4.1]
 gi|227178565|gb|EEI59537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX1330]
 gi|257831694|gb|EEV58115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com12]
 gi|292643430|gb|EFF61559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium PC4.1]
          Length = 373

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   +   N   A +G++V L+G++ G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   EI++  + 
Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY    +
Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + +   V
Sbjct: 351 GMECLGGGLIDHAYQETKV 369


>gi|205822381|sp|A2RLX1|MNMA_LACLM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 376

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 198/385 (51%), Gaps = 24/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 4   KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 61  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R    +DG     M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 121 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG  +      +Y   ++
Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 292

Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
              D  F   + + F   C  K R  Q+   V +  N D V VDF++    +  GQA VF
Sbjct: 293 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGG +I  + +   V
Sbjct: 352 YDGE----ECLGGAMIDVAYKEQKV 372


>gi|148272583|ref|YP_001222144.1| tRNA-specific 2-thiouridylase MnmA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|166234849|sp|A5CQU4|MNMA_CLAM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147830513|emb|CAN01448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltr [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 387

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 186/371 (50%), Gaps = 26/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G+DV GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SRMPGTLRTGSRGCCTIEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADLLGIPFYVWDFSERFAADVVDDFVAEYQAGRTPNPCMRCNERIKFAAVLEKALDLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  + +  G DG+    + R     +DQSY L   T +Q+    FPLG    K
Sbjct: 120 DAVCTGHY--ADVLEGPDGQPE--LHRAAAWAKDQSYVLGVLTAEQIAHSYFPLGSTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
             VR  A+  G+ +A K DS DICF+  G     +  R+    A  G+I+   G  +G H
Sbjct: 176 AEVRAEAQARGIQVAQKPDSHDICFIPDGDTRGWLADRVG---AEPGEILDGEGNAIGTH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQR+GL +      G P FV+ +    + V+VGP+E+L +  I      W G
Sbjct: 233 QGAAAFTVGQRKGLAIGTPAPDGRPRFVLEIRPKDNTVVVGPQEALAIREIAGSSYTWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEV--GVASGQACVFY 368
                      F C V+IR+  DPVP    V   D  V +     +   GVA GQ  V Y
Sbjct: 293 TPPTRPD--QPFDCDVQIRAHADPVPARAAVSVVDGSVQLVITPRDPLHGVAPGQTAVVY 350

Query: 369 TSDSNEARVLG 379
                  RVLG
Sbjct: 351 AG----TRVLG 357


>gi|120598593|ref|YP_963167.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. W3-18-1]
 gi|166235084|sp|A1RIW8|MNMA_SHESW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120558686|gb|ABM24613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. W3-18-1]
          Length = 372

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 200/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHQV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L  + + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSNGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSVVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|192361469|ref|YP_001982951.1| tRNA-specific 2-thiouridylase MnmA [Cellvibrio japonicus Ueda107]
 gi|190687634|gb|ACE85312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellvibrio japonicus Ueda107]
          Length = 378

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 27/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ ++    ++    C A  D+ DA+RVCD
Sbjct: 20  KVIVGMSGGVDSSVSALLLQQQGYAVEGLFMKNWDEDDGTEY---CTAKADLADAQRVCD 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F   Y AG TP P + CNR +KF   +   + LG +++
Sbjct: 77  KLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFMEYAQMLGGELI 136

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       D     ++ + +D  +DQSYFL A  + +     FP+G+++K  VR
Sbjct: 137 ATGHYVRRA-----DRNGHTLLLKGLDPNKDQSYFLHAVGEAEFAKSLFPVGELEKPEVR 191

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL   +K DS  ICF+ + ++ D +++     A  G+I   +GQ++G H G++ 
Sbjct: 192 RIAEEHGLVTHNKKDSTGICFIGERRFKDFLQQYLP--AQPGEIQTPDGQVIGEHMGLMY 249

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+     A  EP FV   D   + +IV        L  + +  ++ +W+  
Sbjct: 250 HTIGQRQGLGIGGVKGANEEPWFVAQKDLGRNVLIVVQGTDHPLLYTNHLLAQQTHWING 309

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                A    F+C  K R  Q      VQ  D+G + V F++ +  V  GQ+ V Y  D+
Sbjct: 310 ----SAPASEFRCMAKTRYRQPDQACRVQVLDNGRLDVFFDEPQRAVTPGQSLVLYDGDT 365

Query: 373 NEARVLGGGIISGS 386
                LGG +I  +
Sbjct: 366 ----CLGGAVIEST 375


>gi|330444363|ref|YP_004377349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pecorum E58]
 gi|328807473|gb|AEB41646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pecorum E58]
          Length = 361

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 196/369 (53%), Gaps = 29/369 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVVAMSGGVDSSVVA LLKR   Y+V+G+ ++ +  +        C + QD  D  +VC 
Sbjct: 5   VVVAMSGGVDSSVVAYLLKRYTSYNVVGLFMKNWEEKT---HDDVCLSAQDYADVEKVCS 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   +   ++  V   F   Y+ G TP P + CNR +KF+ L    R+LG D L
Sbjct: 62  QLDIPYYTVSFVREYQELVFSRFLKEYSLGYTPNPDILCNREIKFALLQKKVRELGGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY RS L    D     +  R +D  +DQSYFL  T +Q L ++ FPLG+MKK  VR
Sbjct: 122 ATGHYCRSNL----DASGVSLF-RGVDRNKDQSYFLSGTPRQALANVLFPLGEMKKNEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260
            LA E GL  A K DS  ICF+ +  +   +++       EGDIV  + Q ILG+H G  
Sbjct: 177 ALAEEAGLATARKKDSTGICFIGKRPFKQFLEQFVP--KKEGDIVDWDTQTILGKHEGAH 234

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHR--IYLREINWLGDGL 315
            YTIGQRRGL +    +P +VV   ++KN   ++ G    L ++R  ++ +E+NW  D  
Sbjct: 235 YYTIGQRRGLDLGGTSKPCYVVGKDMEKNLVYIVQGEDHPL-LYRTELFAKELNWFVD-- 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                V      V+ RS  +   + FV  ++D + V F      V  GQ   FY  D   
Sbjct: 292 --PKSVHTCTAQVRYRSEDEQCTIEFV--SEDRLRVCFITPIKAVTPGQTIAFYQGD--- 344

Query: 375 ARVLGGGII 383
            R LG G+I
Sbjct: 345 -RCLGSGVI 352


>gi|125624516|ref|YP_001032999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493324|emb|CAL98297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071310|gb|ADJ60710.1| tRNA-specific 2-thiouridylase MnmA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 384

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 198/385 (51%), Gaps = 24/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 12  KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 69  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R    +DG     M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 129 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG  +      +Y   ++
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 300

Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
              D  F   + + F   C  K R  Q+   V +  N D V VDF++    +  GQA VF
Sbjct: 301 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 359

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGG +I  + +   V
Sbjct: 360 YDGE----ECLGGAMIDVAYKEQKV 380


>gi|227495064|ref|ZP_03925380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces coleocanis DSM 15436]
 gi|226831516|gb|EEH63899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces coleocanis DSM 15436]
          Length = 378

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 210/386 (54%), Gaps = 31/386 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G+DV  V + L +S + S R G+  CC+ +D  DA R
Sbjct: 1   MRVLAALSGGVDSAVAAARAVEAGHDVTAVHMALSSSPQ-SCRMGARGCCSLEDSVDAAR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +T+ + +YV+D  E F   VI  F   Y  G TP PCV CN  VKF +L    + LG 
Sbjct: 60  AAETLGIPYYVWDLAEEFEETVINDFVEQYQLGRTPNPCVRCNEFVKFRELAERAKALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D + TGHY  +R+  G +GK+   + R  DL +DQSY L    +++L  +  PLGD+  K
Sbjct: 120 DAVCTGHY--ARVEEGPNGKQ---LLRARDLLKDQSYVLAVMGEEELDRVILPLGDVTSK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRH 256
            +VR+ A   GL +++K DS DICF+  G     ++ R+       G+IV  +G +LG H
Sbjct: 175 TAVREEAEARGLGVSNKPDSYDICFIPDGDTQGFLRARLGENT---GNIVDPDGNVLGTH 231

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL- 311
            G   YT+GQR+GLG+      G+P +V+    +++ V+VG    L +  +   E+ WL 
Sbjct: 232 RGYFEYTVGQRKGLGIDRPAEDGKPRYVLETRPSTNEVVVGSATLLSIDTVRANELTWLA 291

Query: 312 ----GDGLFE---DAVVDGFKC-FVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASG 362
               G+ L E   +   D  +C + ++R+    +PV  +++  + V +   +   G+A+G
Sbjct: 292 TDDQGEVLTEISQEMGTDDDQCLYAQMRAHGRAIPVVGLEKTTETVKIRLGEMVRGIAAG 351

Query: 363 QACVFYTSDSNEARVLGGGIISGSKR 388
           Q+ V Y  +    RVL   +I  ++R
Sbjct: 352 QSLVIYRGN----RVLAHAVIEFARR 373


>gi|157370264|ref|YP_001478253.1| tRNA-specific 2-thiouridylase MnmA [Serratia proteamaculans 568]
 gi|166991124|sp|A8GDD5|MNMA_SERP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157322028|gb|ABV41125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia proteamaculans 568]
          Length = 367

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 203/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +    D   + R++ R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQ----DVDSKSRLL-RGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVSVDGQTVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+     +  +P +VV  D  N+  V+    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHEHPRLMSVGLIAQQLHWV- 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D L    +   F+C VK R  Q  +P  V   D+  + V F++    V  GQ+ VFY  +
Sbjct: 297 DRL---PLSGPFRCTVKTRYRQQDIPCTVTPLDEQRIEVRFDEPVAAVTPGQSAVFYQDE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 I----CLGGGIIE 362


>gi|300814306|ref|ZP_07094578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511573|gb|EFK38801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 351

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 188/373 (50%), Gaps = 30/373 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +         G C A +D  D  +
Sbjct: 2   KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWAD------DGICTATEDYMDVVK 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + ++  ++EE +RN V   F + Y  G TP P V CN  +KF   L+       
Sbjct: 56  VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R++     DGK    +CR +D  +DQSYFL   T+  L    FP+G+++K+
Sbjct: 116 DYIAMGHYARTK---NIDGK--TYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A++ GL  A K DS  ICF+ +  +   + +        G IV   G +LG H+G
Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQF--LFTKPGKIVDTQGNVLGEHSG 228

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL- 311
           +I+YTIGQRR     G   GEP FV   D  ++ +IV   E   +L      + ++ W+ 
Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G   F        K  VKIR         ++ N+   +V  +    GV  GQ  VFY   
Sbjct: 289 GKPHFP------LKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFY--- 339

Query: 372 SNEARVLGGGIIS 384
            N+   LG GII 
Sbjct: 340 -NDEICLGSGIIK 351


>gi|205821993|sp|A6WP69|MNMA_SHEB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|319426629|gb|ADV54703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella putrefaciens 200]
          Length = 372

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHQV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|126174691|ref|YP_001050840.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS155]
 gi|125997896|gb|ABN61971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS155]
          Length = 392

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 32  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 89  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 148

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 149 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 204

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 205 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 262

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 263 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 320

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 321 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQSAVFYD 376

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 377 GEV----CLGGGII 386


>gi|296388914|ref|ZP_06878389.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAb1]
 gi|313107663|ref|ZP_07793846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa 39016]
 gi|310880348|gb|EFQ38942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa 39016]
          Length = 363

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 200/381 (52%), Gaps = 36/381 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ DA+ VCD 
Sbjct: 1   MIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADAQAVCDR 57

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD++A
Sbjct: 58  IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIA 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR 
Sbjct: 118 TGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRA 172

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GRH+G++ +
Sbjct: 173 IAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRHSGLMYH 230

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREIN 309
           TIGQR+GLG+     A  +P +V+  D   + ++VG           +L   RIY     
Sbjct: 231 TIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIY----- 285

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ+ VFY 
Sbjct: 286 WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVVFYD 341

Query: 370 SDSNEARVLGGGIISGSKRSD 390
            D      LGGG+I  ++  D
Sbjct: 342 GDV----CLGGGVIETAEAWD 358


>gi|217973050|ref|YP_002357801.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS223]
 gi|205821978|sp|A3D5F8|MNMA_SHEB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811460|sp|B8E945|MNMA_SHEB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|217498185|gb|ACK46378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS223]
          Length = 372

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|153000990|ref|YP_001366671.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS185]
 gi|151365608|gb|ABS08608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS185]
          Length = 392

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 32  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 89  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 148

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 149 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 204

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 205 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 262

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 263 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 320

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         VDG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 321 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 376

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 377 GEV----CLGGGII 386


>gi|327398348|ref|YP_004339217.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411]
 gi|327180977|gb|AEA33158.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411]
          Length = 338

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 192/353 (54%), Gaps = 37/353 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V VA+SGGVDS+  A LLK++G++V+G+TL+LY+     K+            A ++ 
Sbjct: 1   MKVAVALSGGVDSATAAFLLKKEGHEVVGITLKLYDDESYIKQ------------AEKIA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  + FDY   F+  VI  F ++Y  G+TP PCV CNR VKF+ LL V  +L  D 
Sbjct: 49  EFLGIEWHCFDYSLEFKKGVIDYFFNTYLNGKTPNPCVVCNRYVKFNYLLEVADKLNCDK 108

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPM----DLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           LATGHY R           R+++ +P+      E+DQSYFL    + Q+  L FPLG++ 
Sbjct: 109 LATGHYARI---------SRKLLNKPLIAKSPSEKDQSYFLCFLNESQIKKLMFPLGELN 159

Query: 197 -KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            KE+ R +A ++ L +A K DS D+CFV +G Y D++K  N     EG  + L+G+ + +
Sbjct: 160 SKETTRQIAEKINLSLAQKKDSFDVCFV-RGNYRDLLK--NRLKEKEGYFI-LSGKKIKK 215

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI +YT+GQR+GL +A  E L+V  +   +  + +  ++ L     Y R +    + L
Sbjct: 216 HEGIFSYTVGQRKGLRIAYKEALYVKSIHPKTGNIYLSTKKEL-----YKRTVRASVENL 270

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ-ACVF 367
              A  + FK   K+RS  D     +  +     ++F+        GQ ACV+
Sbjct: 271 LY-APSEKFKAKAKLRSKMDKAFCTITLDKKSFLMEFDHPVFAPTPGQVACVY 322


>gi|307128600|ref|YP_003880630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri CARI]
 gi|306483062|gb|ADM89932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri CARI]
          Length = 387

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 204/402 (50%), Gaps = 56/402 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LLK+ GYDVIG+ L+ YN          C   +D  DA  V  
Sbjct: 3   RVIVGMSGGVDSSVAALLLKKKGYDVIGIYLKYYNIN------NKCPWREDSIDAMLVSQ 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ +  Y+ D  + ++  +I      Y  G TP P + CN  +KF   L  +R   +D++
Sbjct: 57  SLKIPFYIIDITKNYKKLIINYIYKEYKKGFTPNPDILCNSKIKFKIFLEKSRFFKSDLI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R    +  +GK    +   +D  +DQSYFL    Q Q+ +  FPLG++ K+ VR
Sbjct: 117 ATGHYVRKEK-IKKNGKIYYKIISGIDDNKDQSYFLCNLNQDQIQNSIFPLGNLNKKKVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------------ 249
           ++A +  L  A K DSQ ICF+ + K+ + +K+    +  +GDI+ +N            
Sbjct: 176 EIANKYNLINAKKKDSQGICFIGKIKFLNFLKK--KLVEKKGDIIEINKNNHIYKYDKYK 233

Query: 250 ---------------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
                                G+I+G+H G+  +T GQR+GL +     PLF++  D  +
Sbjct: 234 FSSKKEFLFFLSKKIKYKKEYGKIIGKHIGVHYFTKGQRKGLKIGGYKYPLFIIEKDIIN 293

Query: 288 SRVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + + VG     P    +V  I  + I+W+ +   +  +    +C ++ R +     +F+ 
Sbjct: 294 NILYVGMGKNHPGLYTKVICIKKKNIHWMNENFIKKKI--EVECRIRYRQNFQKATLFIN 351

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +N   +YV+FE  ++ V +GQ  V+Y ++     ++G G+IS
Sbjct: 352 KNS--LYVEFEIPQLAVNAGQFIVWYINNE----IIGSGLIS 387


>gi|261252577|ref|ZP_05945150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio orientalis CIP 102891]
 gi|260935968|gb|EEX91957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio orientalis CIP 102891]
          Length = 378

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 203/380 (53%), Gaps = 33/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +A GHY+R      ++   G++ + M R +D  +DQSYFL+  +  Q+    FP+G+++K
Sbjct: 129 IAMGHYVRRTFPTAEELAAGEKPK-MLRGLDGNKDQSYFLYTLSSDQVARSLFPVGELEK 187

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E  L  A K DS  ICF+ + K+ D + R     A  G+I    G+++G+HN
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGKVIGQHN 245

Query: 258 GIINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYL 305
           G++ +T+GQR+GL +          +P FV   DK+  R ++          L+   +  
Sbjct: 246 GLMYHTLGQRKGLHIGGQKGGGGNEDPWFVG--DKDLKRNVLIAVQGKDHPMLKSQGLIA 303

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQA 364
            +++W+      DA+ +  +C VK R  Q  +P   +  +D+ + V F++ +V V  GQ+
Sbjct: 304 SQLHWVD----RDAIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPGQS 359

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  +      LGGGII 
Sbjct: 360 AVFYKDEV----CLGGGIIE 375


>gi|238920209|ref|YP_002933724.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella ictaluri 93-146]
 gi|259495829|sp|C5B8B9|MNMA_EDWI9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|238869778|gb|ACR69489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Edwardsiella ictaluri 93-146]
          Length = 367

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +    + +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  RLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G+++K  V
Sbjct: 125 IATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G+ +G H G++
Sbjct: 180 RRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D +++ ++V      PR  L  + +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPR--LFSNGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           + D L   A +   +C VK R  Q  +P  V    D+ + V F++    V  GQ+ VFY 
Sbjct: 296 V-DRLPLGAPL---RCTVKTRYRQADIPCLVTPLADERIEVRFDQPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 DEV----CLGGGIIE 362


>gi|297191915|ref|ZP_06909313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721106|gb|EDY65014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 375

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 192/361 (53%), Gaps = 25/361 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY  + + + DDG R   + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHY--ATVVLKDDGSRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253
             K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +G+ L
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGTA---EGDIVDESGKKL 238

Query: 254 GRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  
Sbjct: 239 GSHEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPR 298

Query: 310 WLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           W G      A  +G   +  ++R+      V  +  D   + V F +   GVA GQA V 
Sbjct: 299 WCG------AAPEGPGTYTAQLRAHGGETEVTAELVDGSELRVTFTEPVRGVAPGQAVVL 352

Query: 368 Y 368
           Y
Sbjct: 353 Y 353


>gi|329770388|ref|ZP_08261770.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325]
 gi|328836511|gb|EGF86171.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325]
          Length = 370

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 188/370 (50%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDVIGV ++ +  +     KG C A +D  D  +VC+
Sbjct: 6   KVVVGMSGGVDSSVTAYLLKEQGYDVIGVFMKNWEEKDD---KGVCVAEKDYADVIKVCE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L     LGAD +
Sbjct: 63  QLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLEYAEDLGADYV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +     D   +R++ R +D  +DQ+YFL    Q Q+ ++ FP+G+++K+ VR
Sbjct: 123 ATGHYARVK-----DENGQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKDVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A K DS  ICF+ +  + + + +     +  G +V L+G + G H G+++
Sbjct: 178 RIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--SQSGKMVDLDGNVRGEHIGLMH 235

Query: 262 YTIGQRRGLGVAM-----GEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           YTIGQR GLG+       GE  F     L+ N   V  G           L         
Sbjct: 236 YTIGQRHGLGIGGTKDTDGEAWFACGKDLENNILYVCQGFHNEKLYSDSLLASSLSF--- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +D   + F C  K R  Q    V V+    D V V +++    V  GQA VFY  D  
Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVEVEILEGDKVRVVYKEPVRAVTPGQAVVFYDGDI- 351

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 352 ---CLGGATI 358


>gi|271500468|ref|YP_003333493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech586]
 gi|270344023|gb|ACZ76788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech586]
          Length = 370

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 33/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + ++ +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGITLHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + QQL    FP+G+++K  V
Sbjct: 125 IATGHYVRRQ---DIDGKSR--LLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+++G H G+
Sbjct: 180 RKIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMGEHQGL 237

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+        +P +VV  DK+ +  ++   +  E  R+       ++++
Sbjct: 238 MYHTLGQRKGLGIGGVKEGGDDPWYVV--DKDVASNVLYVAQGHEHPRLMSVGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  +P  +   D D + V FE+    V  GQ+ VFY
Sbjct: 296 WVD----REPLSAPLRCTVKTRYRQADIPCLLTPLDADRIDVRFEEPVAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGGII 
Sbjct: 352 QGEV----CLGGGIIE 363


>gi|269960819|ref|ZP_06175190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi 1DA3]
 gi|269834483|gb|EEZ88571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi 1DA3]
          Length = 380

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 201/378 (53%), Gaps = 28/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRL---YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +A GHY+R       +  + + +  M R +D  +DQSYFL+  + +Q+    FP+GD++K
Sbjct: 125 IAMGHYVRRSFPENALPGEEQEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDLEK 184

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H 
Sbjct: 185 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQ 242

Query: 258 GIINYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLRE 307
           G++ +T+GQR+GL +          +P FV    L++N    + G     L+   +   +
Sbjct: 243 GLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQ 302

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + + D  KC VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 303 LHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 358

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D      LGGGII 
Sbjct: 359 FYKDDV----CLGGGIIE 372


>gi|257886541|ref|ZP_05666194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,141,733]
 gi|257822595|gb|EEV49527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,141,733]
          Length = 373

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   +   N   A +G++V L+G++ G+H G++ 
Sbjct: 181 AIAERAGLVTAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238

Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   EI++  + 
Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY    +
Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + +   V
Sbjct: 351 GMECLGGGLIDHAYQETKV 369


>gi|239917970|ref|YP_002957528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus NCTC 2665]
 gi|259495832|sp|C5CB51|MNMA_MICLC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|239839177|gb|ACS30974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus NCTC 2665]
          Length = 378

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 192/382 (50%), Gaps = 25/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +  Y +D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ LL    +LG 
Sbjct: 60  ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY   R   G DG     + R  D  +DQSY L   T  QL    FPL D   K
Sbjct: 120 DAVCTGHYAAVR--PGPDGSLE--LHRAADDAKDQSYVLGVLTADQLAHCLFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
           E VR  A E GL +A K DS DICF+  G     + +RI+      G IV   GQ LG H
Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA---PGPIVDPEGQELGTH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQR+GL +      G+P FV+ +    ++V+VG RE L+V RI     +W G
Sbjct: 233 AGAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENKVVVGGRELLDVDRITGIRPSWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-----VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
             + E      F C ++ R+  + V              G  ++  +   GVA GQ  V 
Sbjct: 293 APVPEARTGAWFDCALQFRAHGEIVEARARQRADAAGHPGWEIEPARPLRGVAPGQTAVL 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y       RVLG   I  ++ +
Sbjct: 353 YRG----TRVLGQATIDTARNA 370


>gi|28806117|dbj|BAC59393.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Vibrio parahaemolyticus RIMD 2210633]
          Length = 362

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 198/370 (53%), Gaps = 28/370 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCDKLGIH 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD +A GH
Sbjct: 58  LHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R      ++G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  VR +A 
Sbjct: 118 YVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAE 174

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E GL  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++ +T+G
Sbjct: 175 EQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLMYHTLG 232

Query: 266 QRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGDGL 315
           QR+GL +          +P FV    LD+N    + G     L+   +   +++W+    
Sbjct: 233 QRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWVD--- 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             + + D  KC VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ VFY  D   
Sbjct: 290 -REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDV-- 346

Query: 375 ARVLGGGIIS 384
              LGGGII 
Sbjct: 347 --CLGGGIIE 354


>gi|297202529|ref|ZP_06919926.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083]
 gi|297148131|gb|EFH28850.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083]
          Length = 374

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 200/384 (52%), Gaps = 28/384 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQD 72
           D   + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D
Sbjct: 3   DTTQRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 62  SRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY  +++    DG R   + R  D+ +DQSY L    ++QL    FPL
Sbjct: 122 ALALGFDAVCTGHY--AKVVTLADGSRE--LHRASDMAKDQSYVLGVLDERQLAHALFPL 177

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN 249
           GD    K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +
Sbjct: 178 GDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDES 234

Query: 250 GQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           G  +G H G   +TIGQR+GL +    A G+P +V+ +   ++ V VGP  +L+V  +  
Sbjct: 235 GAKVGTHEGAYGFTIGQRKGLRIGTPAADGKPRYVLDISPVNNTVTVGPAAALDVTALSA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
            +  W G      A   G   +  ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 295 IKPRWCG------AAPTGPGTYTAQLRAHGGETEVTAELVDGELRVSFTEPVRGVAPGQA 348

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            V Y    ++ RV+G   I+ + R
Sbjct: 349 IVLY----DDTRVVGSATIATTVR 368


>gi|153826012|ref|ZP_01978679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-2]
 gi|149740232|gb|EDM54379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-2]
          Length = 372

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 70  KIGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 303 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 359 GEI----CLGGGIIE 369


>gi|323494972|ref|ZP_08100063.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
 gi|323310767|gb|EGA63940.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
          Length = 378

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 201/380 (52%), Gaps = 33/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +A GHY+R      ++   G++ + M R +D  +DQSYFL+  +  Q+    FP+G+++K
Sbjct: 129 IAMGHYVRRTFPTAEELAAGEKPK-MLRGLDGNKDQSYFLYTLSSDQVARSLFPVGELEK 187

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E  L  A K DS  ICF+ + K+ D + R     A  GDI    G+++G+HN
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGDIETPEGKVIGKHN 245

Query: 258 GIINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYL 305
           G++ +T+GQR+GL +          +P FV   DK+  R ++          L+   +  
Sbjct: 246 GLMYHTLGQRKGLHIGGQKGGGGNEDPWFVG--DKDLKRNVLIAVQGKDHPMLKSQGLIA 303

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQA 364
            +++W+       A+ +  +C VK R  Q  +P   +  +D+ + V F++ +V V  GQ+
Sbjct: 304 SQLHWVDRA----AIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPGQS 359

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  +      LGGGII 
Sbjct: 360 AVFYKDEV----CLGGGIIE 375


>gi|111225218|ref|YP_716012.1| tRNA-specific 2-thiouridylase MnmA [Frankia alni ACN14a]
 gi|122953781|sp|Q0RDH6|MNMA_FRAAA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|111152750|emb|CAJ64493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia alni ACN14a]
          Length = 352

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 149/371 (40%), Positives = 192/371 (51%), Gaps = 32/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S + S R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPE-SDRTGARGCCTLEDARDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  ERF   VI  F  SYAAG TP PCV CN  +KF+ +L     LG 
Sbjct: 60  AADVLGIPFYVWDLAERFETEVIDQFVESYAAGRTPNPCVRCNERIKFAAVLDRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +  DG  R    R +D  +DQSY L     +QL   RFPLGD  K 
Sbjct: 120 DAVVTGHHAR----LDPDGTLR----RSVDPAKDQSYVLGTLRPEQLGAARFPLGDSTKA 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIV-HLNGQILGRH 256
            VR  A   GL +ADK DS DICF+  G     ++ RI    +  G IV    GQ LG H
Sbjct: 172 QVRREAAARGLAVADKPDSHDICFISGGDTGGWLRERIG---SRPGPIVDSRTGQTLGEH 228

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   +T+GQRRGL +      G P +V+ +   +S V VGP E L++ R+      W  
Sbjct: 229 DGTFAFTVGQRRGLRLGHPAPDGRPRYVLDISPVTSTVTVGPAEELDIRRLVADRAAWPH 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +G+          C  ++R+    V    +   D + V  +    G A+GQA V Y  D 
Sbjct: 289 EGV--------VTCQAQVRAHGGVVAAEAEARGDDLVVTLDTPVRGTAAGQAVVLYDGD- 339

Query: 373 NEARVLGGGII 383
              RVLGGG I
Sbjct: 340 ---RVLGGGHI 347


>gi|329894882|ref|ZP_08270681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC3088]
 gi|328922611|gb|EGG29946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC3088]
          Length = 361

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 196/378 (51%), Gaps = 27/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           NPK  +V+V +SGGVDSSV A  L   G+DV  + ++ ++    ++    C A QD  DA
Sbjct: 2   NPK-QKVIVGLSGGVDSSVAALCLIEQGFDVEALFMKNWDEDDDTEY---CTAMQDFADA 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V   + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     L
Sbjct: 58  SAVAAALGIVLHGANFAREYWDRVFEYFLAEYRAGRTPNPDILCNKEIKFKAFLDYALNL 117

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R+ L    D      + +  D  +DQSYFL     Q L    FPLGDM 
Sbjct: 118 GADFIATGHYARTGL----DNAGLTTLQKGADPNKDQSYFLHQVPHQALAKTLFPLGDMH 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR+ A+  GL   DK DS  ICF+ + ++ D +       A  G IV ++G+ LG H
Sbjct: 174 KTEVRERAKAAGLATFDKKDSTGICFIGERRFTDFLSTYLP--AQPGKIVAVSGEELGSH 231

Query: 257 NGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
            G++ +TIGQR+GLG+   +     P +VV  D +++R+IV       SL   R+ + + 
Sbjct: 232 QGLMYHTIGQRQGLGIGGTKDFGDAPWYVVDKDLDNNRLIVAQGNQHPSLFKQRLTVVDP 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+G     D     F+C  KIR  Q   P  V      + V+F++++  +  GQ+ VFY
Sbjct: 292 FWIGTPPPRD-----FRCSAKIRYRQPDQPCSVSYQGGDLLVEFDQAQRAITPGQSVVFY 346

Query: 369 TSDSNEARVLGGGIISGS 386
             D    R LGGG+I+G+
Sbjct: 347 DGD----RCLGGGVIAGA 360


>gi|304409068|ref|ZP_07390689.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS183]
 gi|307303071|ref|ZP_07582826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica BA175]
 gi|304352889|gb|EFM17286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS183]
 gi|306913431|gb|EFN43853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica BA175]
          Length = 372

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         +DG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|315640033|ref|ZP_07895158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus italicus DSM 15952]
 gi|315484161|gb|EFU74632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus italicus DSM 15952]
          Length = 378

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 209/385 (54%), Gaps = 25/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+  + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 7   KDNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     
Sbjct: 64  VAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALD 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY  +++   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG M
Sbjct: 124 LGADYVATGHY--AQVVRDEDGLTH--MLRGVDNNKDQTYFLSQLSQEQLAKTMFPLGGM 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A+   L  A K DS  +CF+ +  +   +       A +G++V L+G++ G+
Sbjct: 180 EKSEVRAIAQRANLATAKKKDSTGVCFIGEKNFKQFLSHYLP--AQKGNMVTLDGEVKGQ 237

Query: 256 HNGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H+G++ YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L    +   +I
Sbjct: 238 HDGLMYYTIGQRQGLGIGGGGKTQEPWFVVGKDLATNTLYVGQGFHHPALYADHLDASDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
           ++      +    + FKC  K R  Q  VPV V+   D+   V F++    +  GQA VF
Sbjct: 298 HFTN----QSGQPEEFKCTAKFRYRQQDVPVTVRLLADNRAEVYFDEPVRAITPGQAVVF 353

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y    +    LGGG+I  + + + V
Sbjct: 354 Y----DGMECLGGGLIDRAFQENKV 374


>gi|307326495|ref|ZP_07605690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306887903|gb|EFN18894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 383

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 204/391 (52%), Gaps = 34/391 (8%)

Query: 17  NPKD---MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQ 71
            P+D   +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +
Sbjct: 10  GPRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIE 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL 
Sbjct: 69  DSRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLD 128

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LG D + TGHY  + +    DG R   + R  D+ +DQSY L    ++QL    FP
Sbjct: 129 KALALGFDAVCTGHY--ATIVERADGSRE--LHRASDMAKDQSYVLGVLDERQLAHAMFP 184

Query: 192 LGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           LGD    K  +R  A   GL +A K DS DICF+  G     +   + G A EGDIV  +
Sbjct: 185 LGDTLTTKGEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAG-HLGTA-EGDIVDED 242

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           G+ LG H G   +TIGQRRGL +      G+P +V+ +    + V VGP E+L+V  +  
Sbjct: 243 GRKLGTHEGAYGFTIGQRRGLRIGHPAPDGKPRYVLDISPVDNTVTVGPVEALDVAALTA 302

Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPV---PVFVQRNDDGVYVDFEKSEVGVAS 361
            +  W G       V  G +   ++    +  V   P+ V     G+ V F +   GVA 
Sbjct: 303 IKPRWCG----APPVGPGSYTAQLRAHGGETEVTAEPIGVS----GLRVTFAEPVRGVAP 354

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           GQA V Y    ++ RV+G   I+ ++R+  V
Sbjct: 355 GQAIVLY----DDTRVVGSATIATTERAQVV 381


>gi|15672819|ref|NP_266993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|12723762|gb|AAK04935.1|AE006317_4 tRNA-methyltransferase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406382|gb|ADZ63453.1| 5-methylaminomethyl-2-thiouridylate-tRNA methyltransferase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 384

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 12  KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 69  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 129 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 185 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 242

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG  +      +Y   ++
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 300

Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
              D  F   + + F   C  K R  Q+   V +  N D V VDF++    +  GQA VF
Sbjct: 301 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 359

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGG +I  + ++  V
Sbjct: 360 YDGE----ECLGGAMIDVAYKAQKV 380


>gi|270308092|ref|YP_003330150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. VS]
 gi|270153984|gb|ACZ61822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. VS]
          Length = 357

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 182/363 (50%), Gaps = 22/363 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VAMSGGVDSSV A LL   GYDV GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 8   IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL       A  LA
Sbjct: 65  LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLDKIPDFNAGYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    V  DG    ++ +  D ++DQSYFL+      L  L FPLG   K+ +  
Sbjct: 125 TGHYAR----VLSDGNGTHLL-KGADEKKDQSYFLYTLPPASLSRLMFPLGKRYKKDIIR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA +M L ++ K +SQD+CF+  G Y   +     G    G I+   G+ILG H G+  Y
Sbjct: 180 LAAKMKLPVSQK-ESQDVCFIPDGDYKSFLS-TRMGFT-PGKILDKTGKILGEHQGLPLY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV-V 321
           TIGQR+GLG+A  E LFV  ++  ++ + V   + L   RI L    W      E ++ +
Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTITVASHDQLYTSRILLSNFIWR-----ESSISI 291

Query: 322 DGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           D     VK+R    P  V  + +  D   ++          GQA V Y  D     VLGG
Sbjct: 292 DTPGMIVKVRYKAAPAEVKKISQTGDFHLLELASPVWAATPGQAAVIYLGD----MVLGG 347

Query: 381 GII 383
           GII
Sbjct: 348 GII 350


>gi|15641141|ref|NP_230773.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587442|ref|ZP_01677211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 2740-80]
 gi|121726243|ref|ZP_01679533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V52]
 gi|147673628|ref|YP_001216596.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O395]
 gi|153816924|ref|ZP_01969591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae NCTC 8457]
 gi|153822021|ref|ZP_01974688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|227081301|ref|YP_002809852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae M66-2]
 gi|14195282|sp|Q9KSX8|MNMA_VIBCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828983|sp|A5F2F2|MNMA_VIBC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9655600|gb|AAF94287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548362|gb|EAX58426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 2740-80]
 gi|121631189|gb|EAX63562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V52]
 gi|126512511|gb|EAZ75105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae NCTC 8457]
 gi|126520486|gb|EAZ77709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|146315511|gb|ABQ20050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O395]
 gi|227009189|gb|ACP05401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae M66-2]
 gi|227012943|gb|ACP09153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O395]
          Length = 372

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 70  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 303 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 359 GEI----CLGGGIIE 369


>gi|229505277|ref|ZP_04394787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae BX 330286]
 gi|229511053|ref|ZP_04400532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|229518173|ref|ZP_04407617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC9]
 gi|229608296|ref|YP_002878944.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae MJ-1236]
 gi|254848257|ref|ZP_05237607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MO10]
 gi|255745540|ref|ZP_05419488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholera CIRS 101]
 gi|262158386|ref|ZP_06029502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae INDRE 91/1]
 gi|262170249|ref|ZP_06037936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC27]
 gi|229344888|gb|EEO09862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC9]
 gi|229351018|gb|EEO15959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|229357500|gb|EEO22417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae BX 330286]
 gi|229370951|gb|ACQ61374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MJ-1236]
 gi|254843962|gb|EET22376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MO10]
 gi|255736615|gb|EET92012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholera CIRS 101]
 gi|262021264|gb|EEY39978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC27]
 gi|262029827|gb|EEY48475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae INDRE 91/1]
          Length = 371

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 244 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 302 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 357

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 358 GEI----CLGGGIIE 368


>gi|222099125|ref|YP_002533693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga neapolitana DSM 4359]
 gi|254811469|sp|B9KBD1|MNMA_THENN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221571515|gb|ACM22327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga neapolitana DSM 4359]
          Length = 358

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 188/369 (50%), Gaps = 20/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        K   +K  CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+  ++ V   + D  E FR  VI PF      G TP PCV CNR VKF   +      G
Sbjct: 61  RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R   + G  GK  +++ + +D ++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARVE-FSGKYGK--KVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
           E +R +A E G+ +A K +SQD+CF+  G   + +K  + GI L EG ++   G+++G H
Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLSEGKVITEKGEVVGHH 235

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G   YT+GQR+GL +   GE L+V      S+ V+V   E +    +   +  W  D  
Sbjct: 236 RGYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEGVFFSGLIAVDPVWHVD-- 293

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               + + F+C  ++R   +  P  V+  +  V V FEK    V  GQ   FY  D+   
Sbjct: 294 ----LPEEFRCVCRVRKKAEEAPAIVRVKNSEVEVRFEKKIFAVTPGQIAAFYDEDT--- 346

Query: 376 RVLGGGIIS 384
            +LGG II 
Sbjct: 347 -LLGGAIIK 354


>gi|160875703|ref|YP_001555019.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS195]
 gi|160861225|gb|ABX49759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS195]
 gi|315267892|gb|ADT94745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS678]
          Length = 392

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 32  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 89  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 148

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 149 IAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 204

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 205 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 262

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 263 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 320

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         +DG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 321 VD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 376

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 377 GEV----CLGGGII 386


>gi|224826536|ref|ZP_03699637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lutiella nitroferrum 2002]
 gi|224601137|gb|EEG07319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lutiella nitroferrum 2002]
          Length = 358

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 184/369 (49%), Gaps = 24/369 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV MSGGVDSSV A LLK+ G++VIGV +Q +      +    C   QD  DA  V D
Sbjct: 6   RIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDEY---CSIKQDALDAMSVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V ++ + +++ V   F   Y+AG TP P V CN  +KF   L    +LGAD +
Sbjct: 63  IVGIDMEVVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGADCI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DGK    + + +D  +DQSYFL+   Q QL    FPLG+++K  VR
Sbjct: 123 ATGHYARKE---ERDGK--HYLLKAVDHTKDQSYFLYRLNQAQLSKAMFPLGEIRKTEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL  A K DS  ICF+ +  + + ++R        GD+V   G+ +GRH G++ 
Sbjct: 178 QLAEQAGLPTAAKKDSTGICFIGERPFREFLQRYLP--TQPGDMVTPEGKTVGRHEGLMY 235

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD--G 314
           YT+GQR+GL +       GEP FV   D   +R+IV        H + L+    +GD   
Sbjct: 236 YTLGQRKGLNIGGAKDGSGEPWFVAGKDIPGNRLIVVQGHD---HPLLLKNTLEMGDLSW 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             ++A + G           D         D    + F   +  V  GQ+ V Y  D   
Sbjct: 293 TLDEAPLPGDYAAKNRYRMADAACSLSPVVDGEANLTFRDKQWAVTPGQSAVLYDGDI-- 350

Query: 375 ARVLGGGII 383
              LGGGII
Sbjct: 351 --CLGGGII 357


>gi|24374174|ref|NP_718217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella oneidensis MR-1]
 gi|30173411|sp|Q8CX40|MNMA_SHEON RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24348681|gb|AAN55661.1|AE015704_12 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella oneidensis MR-1]
          Length = 372

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    +DG  +  M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR--DNEDGTTQ--MLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++MGL   DK DS  ICF+ + K+ + +   N   A  G+I   +G+++G H G++
Sbjct: 185 REIAKQMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETADGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + ++VG     PR  L  + + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMLVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +         ++G +  VK R  Q  +P      +D+ + V F++    V  GQ+ VFY 
Sbjct: 301 VD----RKGPINGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|289208445|ref|YP_003460511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. K90mix]
 gi|288944076|gb|ADC71775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. K90mix]
          Length = 373

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 193/381 (50%), Gaps = 29/381 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDS+V A+ L   GY V G+ ++ +     ++    C A  D   AR V  
Sbjct: 6   RVIVGLSGGVDSAVAASRLLEAGYRVEGLFMKNWEDDDDAE---YCAAEADFEMAREVAA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ E +R  V   F   Y AG TP P + CNR +KF   L   RQLGA  +
Sbjct: 63  CLEIPLHKANFAEDYRQRVFRHFLHEYEAGRTPNPDILCNREIKFRSFLDHARQLGAQWI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G        +C   D  +DQ+YFL   TQ+QL    FPLGD+ K+ VR
Sbjct: 123 ATGHYARVRHLPGHSE-----LCMAADANKDQTYFLHTLTQEQLRPALFPLGDIPKDQVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             ARE+GL    + DS  ICF+ + ++ D + +     A EG++    GQ++G H G++ 
Sbjct: 178 ARARELGLPNHARKDSTGICFIGERRFRDFLAQYLR--APEGEMCTPEGQVVGHHQGLMF 235

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG--PRESLEVH-RIYLREINWLGD 313
           YT+GQR+GLG+         P +VV  D  S+R+IV   PR  L +   I    ++W+  
Sbjct: 236 YTLGQRQGLGIGGIDGFPEAPWYVVDKDLGSNRLIVAQDPRHPLLMSPEIETETVHWI-- 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                    G     ++R  Q   P  ++  D G V V F+  +     GQ+ VFY  D 
Sbjct: 294 ---HRPPEPGRPVMARLRHRQPLQPCRLESVDGGRVRVRFDAPQRAATPGQSAVFYNGDV 350

Query: 373 NEARVLGGGIISGSKRSDAVE 393
                LGG +I+ ++R+ A E
Sbjct: 351 ----CLGGAVIA-TRRTLASE 366


>gi|256028712|ref|ZP_05442546.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
 gi|289766621|ref|ZP_06525999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289718176|gb|EFD82188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 344

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 195/362 (53%), Gaps = 21/362 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC+
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCN 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  A+ +
Sbjct: 53  KLEIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  + +   +   +  ++     + +DQSY L+  +  +L  L FPL    K+ +R
Sbjct: 113 ATGHY--TSVEYSEIFSKYLLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEIR 170

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL+I +K DSQ ICF ++G Y + +K       + G+ V  +G ILG H G   
Sbjct: 171 EIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQL 229

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + +P+F+  +   ++ +++G    L  +++ L  IN+     +E   +
Sbjct: 230 YTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTNKVEL--INYKFSVEYEK--L 285

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +  +   + R S       + +N + +Y  + +     A GQ  VF+     +  V+GGG
Sbjct: 286 ENLELLARPRFSSTGFFGKLMKNKNKIYFKYNEENAHNAKGQHIVFFY----DGFVVGGG 341

Query: 382 II 383
            I
Sbjct: 342 EI 343


>gi|281491325|ref|YP_003353305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis KF147]
 gi|14195271|sp|Q9CHA1|MNMA_LACLA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|281375066|gb|ADA64584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 376

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 4   KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 61  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 121 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 177 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 234

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG  +      +Y   ++
Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 292

Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
              D  F   + + F   C  K R  Q+   V +  N D V VDF++    +  GQA VF
Sbjct: 293 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGG +I  + ++  V
Sbjct: 352 YDGE----ECLGGAMIDVAYKAQKV 372


>gi|205821998|sp|A9L4G9|MNMA_SHEB9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G+++G H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L    + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         +DG    VK R  Q  VP  +   D+    V F++    V  GQ+ VFY 
Sbjct: 301 VD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|253995996|ref|YP_003048060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera mobilis JLW8]
 gi|253982675|gb|ACT47533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera mobilis JLW8]
          Length = 369

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 204/385 (52%), Gaps = 27/385 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++L+K  K  ++VV +SGGVDSSV A LLK+ GY+V G+ ++ +      +    C + Q
Sbjct: 1   MNLNKAQKK-KIVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDEY---CSSKQ 56

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA  V D I +     ++ + +++ V   F S Y AG TP P + CN  +KF   L 
Sbjct: 57  DLIDAVSVADKIGIDIEAVNFSKEYKDRVFANFLSEYQAGRTPNPDILCNAEIKFKAFLD 116

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               +GAD++ATGHY + R      GK +  + +  D  +DQSYFL+   Q QL    FP
Sbjct: 117 HAMGMGADLIATGHYAQVRENPLQPGKFQ--LLKADDGSKDQSYFLYRLNQAQLSKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250
           LG   K  VR++AR  GL  A+K DS  ICF+ +  + + + +    +  E GD+    G
Sbjct: 175 LGQHLKREVREIARSAGLINAEKKDSTGICFIGERPFQEFLSKY---LPREPGDMKTPEG 231

Query: 251 QILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHR- 302
           +++GRH G++ YT+GQR+GL +     + GEP FV    ++KN   V+ G    L ++  
Sbjct: 232 KLVGRHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAGKDMEKNELIVVQGHEHPLLLNDG 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           +   +++W+     E+     +    K R  Q   P  V R + D V + F + +  +  
Sbjct: 292 LKAGQLHWIS----EENPTTNWVYAAKTRYRQPDAPCEVDRISSDEVEIKFGQKQWAITP 347

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQ+ V Y S+      LGGGII+G+
Sbjct: 348 GQSAVVYESNV----CLGGGIITGA 368


>gi|261210711|ref|ZP_05925003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC341]
 gi|260840196|gb|EEX66776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC341]
          Length = 371

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLDIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 244 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGAEHPLLKSHGLVAAQLHW 301

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    V   DD + V F++ +V V  GQ+ VFY 
Sbjct: 302 VD----RTPITEPVRCSVKTRYRQSDIACTVVPVGDDRIKVMFDEPQVAVTPGQSAVFYQ 357

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 358 GEI----CLGGGIIE 368


>gi|33519851|ref|NP_878683.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia
           floridanus]
 gi|81657434|sp|Q7U353|MNMA_BLOFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33504196|emb|CAD83458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Blochmannia floridanus]
          Length = 369

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 206/379 (54%), Gaps = 42/379 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDSSV A LL++ GY V G+ ++ + +      K  C + +D+ DA  +C+
Sbjct: 3   KVIVGISGGVDSSVAAWLLQQQGYLVEGLFMKNWEN---DDEKEYCSSEEDLSDAWSICN 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
           T+ +  +  ++ + +   V   F  +Y +G TP P V CN+ +KF   L    + LGAD 
Sbjct: 60  TLKIPLHTVNFAQEYWENVFQVFLQAYQSGFTPNPDVLCNKEIKFKHFLDFALEDLGADF 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       + K++  + + +D  +DQSYFL+   QQQL    FP+G + K +V
Sbjct: 120 IATGHYVRCM-----NVKKKITLMKGIDQNKDQSYFLYTLNQQQLKRCLFPIGSLTKLTV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A+E+ L  A+K DS  ICF+ +  +   +      IA++ GDI++++G  LG H GI
Sbjct: 175 RKIAKELNLITANKKDSTGICFIGKRNFRSFLSNY---IAIQPGDIINIHGNKLGLHQGI 231

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV----GPRESLEVHRIYL-REIN 309
             YTIGQR+GL +       G+P +VV  DKN +  ++    G      + RI++ ++I 
Sbjct: 232 PFYTIGQRKGLNIGGISNGNGKPWYVV--DKNITHNVLIVAQGINHPCLMSRIFIVQKIF 289

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGVYVDFEKSEVGVASGQA 364
           W+   + +  +    +C VKIR  Q  V     P+ V    D + +  ++    +A GQ+
Sbjct: 290 WIKGNILKSPI----QCSVKIRYQQSDVQCQIYPISV----DTLKIILKQPVTAIAPGQS 341

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY     +   +GGG I
Sbjct: 342 AVFYI----KKHCIGGGTI 356


>gi|254459256|ref|ZP_05072678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
 gi|207084149|gb|EDZ61439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
          Length = 344

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 199/368 (54%), Gaps = 32/368 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGG+DSSV A LL+++GY+VIGV ++L++  +            ++   ++V  
Sbjct: 4   KVIVGMSGGIDSSVTAYLLQQEGYEVIGVYMKLHDLIENFHE-------DNIASGKKVAR 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ + +++ D   +F+  V   F   Y  G TP PCV CNRT+KF  L    ++ GAD L
Sbjct: 57  SLGIEYHILDLSSKFKEEVYDYFVGEYLNGNTPNPCVKCNRTIKFGALFDFAKEQGADFL 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DG+    + +  D  +DQSYFL    Q  L  L FP+   +K  + 
Sbjct: 117 ATGHYAKT------DGE---FIYKAEDDTKDQSYFLAQIKQDVLKHLIFPMNKYRKTEIV 167

Query: 202 DLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            L   + +  +IA + +SQ+ICFV+   Y D++K+ +  I L G  +  +G  +G H G 
Sbjct: 168 KLGSTLPVIKEIAKRKESQEICFVEN-VYTDIIKK-HTDIDLPGLALDTDGNEVGHHKGY 225

Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           ++YTIG+RRG  V    EP +V  +D N++ ++V  ++ L V ++ +  +N     LF D
Sbjct: 226 MHYTIGKRRGFTVHGAHEPHYVKEIDPNANTIVVCKKDDLGVSKVLIDTLN-----LFID 280

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                F+C VK+R     +   V   D    +  +K+  GVA+GQ  VFY  D N  +VL
Sbjct: 281 K--KEFECTVKLRYRTHKIACKVIIEDSEAMIYLDKNVDGVATGQVAVFY--DGN--KVL 334

Query: 379 GGGIISGS 386
           G G I  +
Sbjct: 335 GSGFIKKT 342


>gi|149908394|ref|ZP_01897057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moritella sp. PE36]
 gi|149808557|gb|EDM68492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moritella sp. PE36]
          Length = 379

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 196/375 (52%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 18  KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEDDDNDEY---CAAAEDLADAQAVCD 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 75  KLGIELHAINFSAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLQFASEVLAADY 134

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+  R     DGK    M R +D  +DQSYFL+     Q+    FP+G+++K  V
Sbjct: 135 IAMGHYVSRRQTA--DGKFE--MLRGLDSNKDQSYFLYTLDHVQVSRSLFPVGELEKPEV 190

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A+K DS  ICF+ + K+ + + +     A  G I  ++G+ +G H G++
Sbjct: 191 RRIAEEQGLITANKKDSTGICFIGERKFTEFLSKYLP--AQPGKIESVDGEEIGEHQGLM 248

Query: 261 NYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
            +T+GQR+GL +         EP +VV  DK+  R ++   +     R++       +++
Sbjct: 249 YHTLGQRKGLHIGGMKNNNNQEPWYVV--DKDMERNVLLVAQGHNHPRLFSTGLMASQLH 306

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  VP  V    +D + V F+K E+ V  GQ+ VFY
Sbjct: 307 WIS----REPLTQPLRCTVKTRYRQTDVPCLVTPIGEDQIEVTFDKPELAVTPGQSAVFY 362

Query: 369 TSDSNEARVLGGGII 383
             D      LGG II
Sbjct: 363 LDDV----CLGGAII 373


>gi|187930035|ref|YP_001900522.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12J]
 gi|229486417|sp|B2UC85|MNMA_RALPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187726925|gb|ACD28090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia pickettii 12J]
          Length = 370

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 193/384 (50%), Gaps = 28/384 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGTGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                A  +G     K R  Q   P  V R   G + + F +++  V  GQ+ V Y  + 
Sbjct: 295 ----HAPAEGTHLGAKTRYRQADAPCTVARAAGGALTLTFSEAQWAVTPGQSAVLYDGEV 350

Query: 373 NEARVLGGGIISGSKRSDAVEESL 396
                LGGGIIS ++ +  VE+++
Sbjct: 351 ----CLGGGIISAAEPA-VVEKAI 369


>gi|17547442|ref|NP_520844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum GMI1000]
 gi|24638316|sp|Q8XVV4|MNMA_RALSO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17429745|emb|CAD16430.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum GMI1000]
          Length = 370

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 196/384 (51%), Gaps = 28/384 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    + G R  ++ +  D  +DQSYFL    Q QL    FPLG+M K  VR
Sbjct: 122 ATGHYARVR----EAGGRFELL-KAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G+H G+  
Sbjct: 177 EIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TKPGPIRTPDGKTIGQHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   +G +   K R  Q   P  V R   D + + F++++  V  GQ+ V Y  D 
Sbjct: 295 ----HPPAEGTQLAAKTRYRQADAPCAVTRATGDALTLTFQQAQWAVTPGQSAVLYDGDI 350

Query: 373 NEARVLGGGIISGSKRSDAVEESL 396
                LGGGII+ S  + ++E+++
Sbjct: 351 ----CLGGGIIA-STEAASLEQAV 369


>gi|88798697|ref|ZP_01114280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Reinekea sp. MED297]
 gi|88778460|gb|EAR09652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Reinekea sp. MED297]
          Length = 364

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 193/372 (51%), Gaps = 26/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDSSV AALL   GY V G+ ++ ++    ++    C A +D+ DA+ V
Sbjct: 6   ETKVIVGMSGGVDSSVTAALLLEQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD
Sbjct: 63  ADRLGIHLHKANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYALTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R+      +GK R  + R  D  +DQ+YFL A   +Q     FP+G+++K  
Sbjct: 123 KIATGHYARTDTM---NGKGR--LLRGNDHNKDQTYFLHAVGHEQFEKTLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G IV L G++LG H G+
Sbjct: 178 VRAIAEKYKLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGKIVTLEGEVLGDHQGL 235

Query: 260 INYTIGQRRGLGVA---MGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           + YTIGQR+GLG+     GE P FV   +  ++ ++V       +L    + L  I W+ 
Sbjct: 236 MYYTIGQRQGLGIGGTRHGEAPWFVAQKNLATNELVVVQGTDHPALFTTYMSLNNIYWVD 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSD 371
           D   E  V     C  K R  Q      + RN  G Y V F + +  +  GQ+ VFY  D
Sbjct: 296 DTGPELPVT--LAC--KHRYRQPDQSCELSRNAQGEYQVTFHEPQRAITPGQSAVFYLGD 351

Query: 372 SNEARVLGGGII 383
                 LGGG+I
Sbjct: 352 V----CLGGGVI 359


>gi|157375020|ref|YP_001473620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sediminis HAW-EB3]
 gi|189040509|sp|A8FUG9|MNMA_SHESH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157317394|gb|ABV36492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sediminis HAW-EB3]
          Length = 372

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 203/395 (51%), Gaps = 41/395 (10%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + E T +N         + +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 1   MALIEPTAIN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 52  DEY---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      L AD +A GHY+R       D   +  M R  D  +DQSYFL+ 
Sbjct: 109 NKEIKFKAFLEFADDILDADYIAMGHYVRRS-----DESGQSQMLRGRDGNKDQSYFLYT 163

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D +       
Sbjct: 164 LSHEQISRSLFPVGELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLSTFLP-- 221

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG- 293
           A  G+I    G+I+G+H G++ +T+GQR+GLG+     +  +P +VV  + + + ++VG 
Sbjct: 222 AQPGNIETAEGEIIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281

Query: 294 ----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGV 348
               PR  L     Y  +++W+         +DG +  VK R  Q D         DD +
Sbjct: 282 GGHHPR--LMSVGFYADQLHWVD----RKGPIDGAQITVKTRYRQRDVACTLTYEGDDRI 335

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            V F++    V  GQ+ VFY ++      LGGGII
Sbjct: 336 KVIFDEPVAAVTPGQSAVFYDAE----LCLGGGII 366


>gi|167623646|ref|YP_001673940.1| tRNA-specific 2-thiouridylase MnmA [Shewanella halifaxensis
           HAW-EB4]
 gi|189040508|sp|B0TQ02|MNMA_SHEHH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167353668|gb|ABZ76281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella halifaxensis HAW-EB4]
          Length = 371

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R     DG  +  M R +D  +DQSYFL+    +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRRDI---DGTSQ--MLRGIDGNKDQSYFLYTLGHEQVARSLFPVGELEKSEV 183

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G H G++
Sbjct: 184 REIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQGLM 241

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L  + +   +++W
Sbjct: 242 YHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVGQGGNHPR--LMSNGLIANQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          DG    VK R  Q  VP  V  + DD + V F++    V  GQ+ VFY 
Sbjct: 300 VD----RKGPADGSNITVKTRYRQQDVPCRVTYDSDDILRVIFDEPVAAVTPGQSAVFYD 355

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 356 GEI----CLGGGII 365


>gi|167756778|ref|ZP_02428905.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402]
 gi|237734496|ref|ZP_04564977.1| tRNA-specific 2-thiouridylase mnmA [Mollicutes bacterium D7]
 gi|167702953|gb|EDS17532.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402]
 gi|229382316|gb|EEO32407.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. D7]
          Length = 377

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 202/376 (53%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           RVV+ +SGGVDS+V A LLK  GYDVIGV ++ ++S+  +   G+       C   +D  
Sbjct: 4   RVVLGLSGGVDSAVAAYLLKEQGYDVIGVFMRNWDSQLNNDILGNPTNDNDICPQEEDYN 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V + + +     D+ + + + V   F   Y  G TP P + CN+ +KF   L   +
Sbjct: 64  DAKAVAECLGIPIKRVDFIKEYWDHVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLDFAK 123

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            L AD +ATGHY + + Y G D     +M + +D  +DQ+YFL    QQQL +  FPLG+
Sbjct: 124 TLNADYIATGHYAQVKHYQGAD----SVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLGE 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           + K  VR +ARE+ L +ADK DS  ICF+ +  + + ++  N   A  G +V +  G ++
Sbjct: 180 IDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQ--NYIPAQAGKMVDIETGNVI 237

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREIN 309
           G H+GI+ YTIGQR+GLG+   G+  FVV    DKN   +  G  ++ L      + ++N
Sbjct: 238 GDHSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQGDQKDWLYSTGALITDVN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+         +D   C  K R  Q   P+ ++  ++D VY+ F+K    V  GQA VFY
Sbjct: 298 WIA----STKPIDKIACNAKFRYRQPDNPIQLEFIDEDTVYLTFDKPIKAVTPGQAAVFY 353

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGG I 
Sbjct: 354 DGDI----CLGGGTIE 365


>gi|157363709|ref|YP_001470476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga lettingae TMO]
 gi|205828979|sp|A8F5H8|MNMA_THELT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157314313|gb|ABV33412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga lettingae TMO]
          Length = 349

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 36/373 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-----QLYNSRKASKRKGSCCAGQDVYD 75
           M++ + +SGGVDS+V    LK +GY+++   +     + + +R+   +   CC+  D  D
Sbjct: 1   MKIGILLSGGVDSAVALYQLKNEGYEIVAYHMKTMKDEFFLNRQVKHK--ICCSPSDTVD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ +  T  V   V +  E F+  +I  +   Y  G TP PC  CNR +KF  L+ +  +
Sbjct: 59  AKLIAKTAGVPLKVVNLHEIFKEKIITYYLQEYTRGRTPNPCYFCNRFIKFGYLMDLMIE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G DV+++GHY R       DGK    + + +D E+DQSYFL +  +++L  + FP GD 
Sbjct: 119 DGVDVISSGHYARVV-----DGK----LLKALDKEKDQSYFLASIEKERLKKIVFPNGDK 169

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG---KYFDVVKRINAGIALE-GDIVHLNGQ 251
            K+ +RD+A++ G+ +  K++SQD+CF+  G   ++F+       GI ++ G I    G+
Sbjct: 170 TKDEIRDIAKKAGIHVHSKAESQDLCFIPDGDQKRFFE-----EQGIKIKSGPIFDKYGK 224

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
            +G H G+INYTIGQR+ +GV+ GE ++V  +  + + +IVG  + ++  +  + + N L
Sbjct: 225 KIGEHTGLINYTIGQRK-IGVSAGERVYVTRICADRNALIVGNEKDVQSDKFSVIDFNLL 283

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            D      +   F+  VK+R +   VP  V   +  V V        VA GQA VFY  D
Sbjct: 284 VD------IDKNFEATVKVRKNSTEVPCKVSLENHRVIVKTTMPVFAVAPGQAAVFYRGD 337

Query: 372 SNEARVLGGGIIS 384
                V+G GII 
Sbjct: 338 I----VIGAGIIE 346


>gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
 gi|123555534|sp|Q31GM9|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
          Length = 379

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 24/378 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +++V+V +SGGVDSSV A LLK+ GYDV G+ ++ +   +    +  C A +D+ D   +
Sbjct: 10  NIKVIVGLSGGVDSSVTALLLKQQGYDVEGLFMKNW---EGDDTEDYCPAAEDLKDVLAI 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++  +V ++   + + V   F + Y +G TP P + CN+ VKF   L     LGAD
Sbjct: 67  CEKLDIPLHVENFSGEYWDRVFEHFLAEYQSGRTPNPDILCNKEVKFKAFLEHAMTLGAD 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  D   +  + + +D  +DQSYFL+   Q QL    FP+G+++K  
Sbjct: 127 YIATGHYAR----ISRDENGQCYLLKGLDNNKDQSYFLYTLQQHQLSKSMFPIGELEKPY 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E  L   DK DS  ICF+ + K+ D +++     A  GDIV+  G+++G H G+
Sbjct: 183 VRQLAEEADLITHDKKDSTGICFIGERKFKDFLQQFLP--AQPGDIVNTEGEVIGHHEGL 240

Query: 260 INYTIGQRRGLGVAMGE-----PLFVV--YLDKNSSRVIVGPRESLEVHRIYLREI-NWL 311
           + +T+GQR+GLG+  G      P F     L+ N    + G    L  H     +  +W+
Sbjct: 241 MYHTLGQRKGLGIGGGFGDSGLPWFSADKNLETNQLIAVQGSDHPLLNHAFLTADTCDWV 300

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  A+    K  V+ R  + P  +  ++N + + V F++ +  +  GQ+ VFY  +
Sbjct: 301 SGHC--PALKQALKAKVRYRQPEQPCQILSEKNGE-IIVQFDEEQTAITPGQSVVFYEGE 357

Query: 372 SNEARVLGGGIISGSKRS 389
           +     LGG II+G   S
Sbjct: 358 T----CLGGAIITGRYHS 371


>gi|258651678|ref|YP_003200834.1| tRNA-specific 2-thiouridylase MnmA [Nakamurella multipartita DSM
           44233]
 gi|258554903|gb|ACV77845.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Nakamurella multipartita DSM 44233]
          Length = 368

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 25/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AAL    G++V GV + L  +   + R GS  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVEAGHEVTGVHMALSRT-PGTLRTGSRGCCTVEDAFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD + +  YV+D+ E F + V+  F S YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCDLLGIPFYVWDFSEDFLDDVVADFLSEYAAGRTPNPCLRCNEKIKFAALLDRAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  +RL  G        + R +DL +DQSY L   T  QL    FPLG++ K 
Sbjct: 120 DAVCTGHY--ARLIDG-------ALYRSVDLAKDQSYVLAVLTPDQLAHSMFPLGELTKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIV-HLNGQILGRH 256
            VR  A+  G  +A K DS DICF+  G  +  +V ++    A  G +V    G+ +  H
Sbjct: 171 QVRAQAQARGFAVAAKPDSYDICFIPDGDTHGYLVDKLG---ARPGAVVDATTGEQIAEH 227

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   YTIGQR+GLG+    A G P +V+ ++  +  V VGP   L+V  +    + + G
Sbjct: 228 DGFFAYTIGQRKGLGLSRPAADGRPRYVLGIEPTTRTVTVGPASGLDVRLVVADRVVFPG 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            G   D  +   +   ++R+    V       D  + +  +++  GVA GQ  V Y   +
Sbjct: 288 -GRRPDFPI---RVQAQLRAHGGTVGGSADLVDGTLRLSLDQAARGVAPGQTMVLYGGAT 343

Query: 373 NEARVLG 379
            +A   G
Sbjct: 344 PDAASAG 350


>gi|329957309|ref|ZP_08297829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328523022|gb|EGF50125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 388

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 202/398 (50%), Gaps = 49/398 (12%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           V  +A  +N  +++K  K  RV+V MSGG+DS+    +L+  GY++IG+T+ ++      
Sbjct: 22  VFLQAKTMNIREMNKIEK--RVLVGMSGGIDSTATCLMLQEQGYEIIGLTMWVW------ 73

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                   G +  +AR++  ++ + H+V D  E FRN ++  F   Y  G TP PCV CN
Sbjct: 74  --------GDEPLEARQLARSMGIEHHVADEREAFRNVIVRNFIDEYRQGRTPNPCVMCN 125

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQS 174
              KF        +L    +ATGHY R      ++Y+  GDD K            +DQS
Sbjct: 126 PLFKFRIFTEWADKLNCRYIATGHYTRLEELNGKIYIVAGDDEK------------KDQS 173

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVK 233
           YFL+   Q  L    FPLG   K  VRD  R+ G  + A++ +S ++CF+ +G Y D ++
Sbjct: 174 YFLWKLGQDVLRRCLFPLGAYTKLQVRDYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLR 232

Query: 234 RINAGIALE---GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290
             +  I  E   G  V+  G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V
Sbjct: 233 EHSPEIDDEVGPGWFVNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTV 292

Query: 291 IVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349
           ++G  E L+   +   + N + +G     V+      V+IR    PVP  V+R +DG + 
Sbjct: 293 MLGDAEQLKAEYMLAEQDNLIDEG----EVLGSSGLTVRIRYRSKPVPCSVKRLEDGRLL 348

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           V FE     +A GQ+ VFY       RV GG  I+  +
Sbjct: 349 VHFEAEASAIAPGQSAVFYIGK----RVAGGSFIASQR 382


>gi|292488015|ref|YP_003530892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora CFBP1430]
 gi|292899233|ref|YP_003538602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC 49946]
 gi|291199081|emb|CBJ46192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC 49946]
 gi|291553439|emb|CBA20484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora CFBP1430]
          Length = 369

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ G+ V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + QQ+    FP+G++ K  V
Sbjct: 124 IATGHYVRRQ---DVDGKSR--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELAKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+H G++
Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +   +    +    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ VFY 
Sbjct: 295 VDRNVLSAPL----RCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 351 DEV----CLGGGIIE 361


>gi|257471315|ref|ZP_05635314.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 392

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++   + +   ++G C + +D+ DA  +C  +N
Sbjct: 35  VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 91

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 92  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258
           A+++ L IA K DS  ICF+         K++   ++L     +GDIV ++G+++G+H+G
Sbjct: 207 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259

Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308
           +  YTIGQR+GLG+    GE   P +VV  +KN  + +++  + S   H + +    + I
Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 317

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VF
Sbjct: 318 NWIN----YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVF 373

Query: 368 YTSDSNEARVLGGGII 383
           Y SD      +GGGII
Sbjct: 374 YVSDI----CIGGGII 385


>gi|113969944|ref|YP_733737.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-4]
 gi|123029751|sp|Q0HJT7|MNMA_SHESM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113884628|gb|ABI38680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. MR-4]
          Length = 372

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 201/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADDILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++MGL   DK DS  ICF+ + K+ + +   N   A  G+I    G+++G+H G++
Sbjct: 185 REIAKKMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETAEGEVIGKHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + ++VG     PR  L  + + + +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMLVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G +  VK R  Q  +P      +D+ + V F++    V  GQ+ VFY 
Sbjct: 301 VD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|330998316|ref|ZP_08322141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329568705|gb|EGG50506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 378

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 210/393 (53%), Gaps = 55/393 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQD----VYDA 76
           +V+V MSGG+DSS V  +L+ +GY+V+GVT+++++ +R+ +       AGQ+    + DA
Sbjct: 7   KVLVGMSGGIDSSAVCLMLQDEGYEVVGVTMRVWDLARQFTD------AGQEYPDFIQDA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   + + HYV D    F++ V+  F   Y AG TP PCV CN   KF  L+    +L
Sbjct: 61  RALAARLGIVHYVADERTAFKDIVVRDFVDEYLAGRTPNPCVMCNPAFKFRVLVEWADKL 120

Query: 137 GADVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           G D +ATGHY+R +       LY G DGK            +DQSYFL+   Q  L    
Sbjct: 121 GCDYIATGHYVRVKEEDGHYALYCGVDGK------------KDQSYFLWRLGQDVLSRCI 168

Query: 190 FPLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGI---ALEGDI 245
           FPLG M+KE VR      G ++  +S +S +ICF+ +  Y D ++     +     EG  
Sbjct: 169 FPLGAMRKEDVRGYLARKGFEMKARSGESMEICFIDK-DYRDFLREQVPDLDRCVGEGKF 227

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V + G+++G H G   +T+GQR+GLG+A+G+P +V+ L+   + V++G  + L+   + +
Sbjct: 228 VDVQGRVIGTHCGFPYFTVGQRKGLGIALGKPAYVLRLNARKNTVMLGDADDLDASHMLV 287

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----------NDDGVYVDFEKS 355
             +    DG ++D  +      V+IR    P+P  V+R          +++   V F++ 
Sbjct: 288 SGMRMPEDGTWDDGSLS-----VRIRYRSRPIPCTVRRVKNLFPEEGGSEELGLVRFKEK 342

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
              V  GQ+ VFY  D    +++GG  I GS+R
Sbjct: 343 ASAVTPGQSAVFYVGD----KMVGGAYI-GSQR 370


>gi|153214224|ref|ZP_01949259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 1587]
 gi|153802718|ref|ZP_01957304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-3]
 gi|153828671|ref|ZP_01981338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 623-39]
 gi|254225518|ref|ZP_04919128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V51]
 gi|297578730|ref|ZP_06940658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC385]
 gi|124115473|gb|EAY34293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 1587]
 gi|124121758|gb|EAY40501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-3]
 gi|125621988|gb|EAZ50312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V51]
 gi|148875824|gb|EDL73959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 623-39]
 gi|297536324|gb|EFH75157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC385]
          Length = 372

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 70  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 303 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 359 GEI----CLGGGIIE 369


>gi|319790619|ref|YP_004152252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermovibrio ammonificans HB-1]
 gi|317115121|gb|ADU97611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermovibrio ammonificans HB-1]
          Length = 357

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 190/365 (52%), Gaps = 30/365 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++  SGGVDS   A LL   G++V  V  +L                 D    RR  +
Sbjct: 16  RVLLGFSGGVDSFYAAHLLLEQGFNVYPVYFKL-------------LPDADTTKPRRSAE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+   V D  E F+ AVI  F + Y  G TP PC  CNR +K  +L  + R+L    +
Sbjct: 63  LLNLKLTVVDLTEEFKKAVIDYFIAYYRKGLTPNPCAVCNREIKLKELYKLARKLKIPYI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V   G  R+++ R ++  ++QSYFL    Q+   +L  PLG++ K  V 
Sbjct: 123 ATGHYARVE-KVESFG--RKLIKRGVEPGKEQSYFLALVEQRVFENLILPLGNLTKREVI 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++G     + +SQD+CF+++  Y D +++        G      G++LG+H G+I 
Sbjct: 180 EKAKKLGFPF--EGESQDVCFIKEKSYADFLRKFIK--PRPGPFKLTTGEVLGKHKGLIY 235

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG++   PL VV L    + VIVGP+E++E   I + ++NW    + ++ + 
Sbjct: 236 YTVGQRRGLGISYKHPLHVVELRPEENAVIVGPKEAVEKDEITVWKVNW---HVPQERLT 292

Query: 322 DGFKCFVKIRSSQDPVPV-FVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           D      ++R   +PVPV  +    +G+Y V         A GQ C FY++D     +LG
Sbjct: 293 D-LPLLAQVRYRSEPVPVESLHYFKNGIYRVKLAAKVSAPAPGQVCAFYSNDL----LLG 347

Query: 380 GGIIS 384
           GG I+
Sbjct: 348 GGEIT 352


>gi|257066076|ref|YP_003152332.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Anaerococcus prevotii DSM 20548]
 gi|256797956|gb|ACV28611.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Anaerococcus prevotii DSM 20548]
          Length = 372

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 201/361 (55%), Gaps = 20/361 (5%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++    +   G C A  D  D
Sbjct: 2   KEKKDTKVVVGVSGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  VC+ I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + 
Sbjct: 59  AVAVCNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R      D      +M R +D  +DQ+YFL   +Q+Q+ D+ FP+G++
Sbjct: 119 LGADYVATGHYARV-----DRSGDETVMLRGLDSNKDQTYFLSQLSQEQIKDVLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR++A +  L  ADK DS  ICF+ +  + + +   N   A  GDIV  +G +LG+
Sbjct: 174 QKSEVREIAHKYKLATADKKDSTGICFIGERDFNEFLS--NYLPAQAGDIVDTDGNVLGK 231

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311
           H+G++ +TIGQRRGLG+   GE  FV   D   + +IV   ++   L  +++Y  E +  
Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFSTF 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                E  +   F C  K R  Q  +   V+  +DG V V +++++  V  GQA VFY  
Sbjct: 292 T----EKKIPKEFDCTAKFRYRQADIKAHVKVLEDGKVEVTYDRTK-AVTPGQAAVFYQG 346

Query: 371 D 371
           +
Sbjct: 347 E 347


>gi|239994884|ref|ZP_04715408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonas macleodii ATCC 27126]
          Length = 369

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 32/379 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ V D
Sbjct: 11  KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVAD 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 68  KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     DGK +  M R +D  +DQSYFL+   ++ +    FP+GD++K  V
Sbjct: 128 IATGHYVRRREV---DGKWQ--MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL   DK DS  ICF+ + K+ D + R     A  G I    G+ +G+H G++
Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLP--AQPGVIETAEGEEIGQHEGLM 240

Query: 261 NYTIGQRRGL---GVAM--GEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GL   G+A    +P +VV  DK+ +R ++   +  +  R+Y      ++++W
Sbjct: 241 YHTLGQRKGLHIGGLAKYGDDPWYVV--DKDVARNVLIVGQGADHPRLYSKGLVAKQLHW 298

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +  VK R  Q  +P       DD + V F++ +  V  GQ+ VFY+
Sbjct: 299 VD----RKTITEPVRAVVKTRYRQADIPCTITPTQDDTIEVIFDEPQKAVTPGQSAVFYS 354

Query: 370 SDSNEARVLGGGIISGSKR 388
            +      LGGGII    R
Sbjct: 355 DEV----CLGGGIIESYIR 369


>gi|219681627|ref|YP_002468013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219624470|gb|ACL30625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 368

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++   + +   ++G C + +D+ DA  +C  +N
Sbjct: 11  VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 67

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 68  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258
           A+++ L IA K DS  ICF+         K++   ++L     +GDIV ++G+++G+H+G
Sbjct: 183 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235

Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308
           +  YTIGQR+GLG+    GE   P +VV  +KN  + +++  + S   H + +    + I
Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VF
Sbjct: 294 NWIN----YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVF 349

Query: 368 YTSDSNEARVLGGGII 383
           Y SD      +GGGII
Sbjct: 350 YVSDI----CIGGGII 361


>gi|262274515|ref|ZP_06052326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Grimontia hollisae CIP 101886]
 gi|262221078|gb|EEY72392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Grimontia hollisae CIP 101886]
          Length = 370

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 31/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLEIPLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R +    G++ + M R +D  +DQSYFL+  +  Q+    FP+GD++K  V
Sbjct: 125 IAMGHYVR-RTFPTKTGEKAQ-MLRGLDSNKDQSYFLYTLSHDQVARSLFPVGDLEKPEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + +     A  G I  ++G+ +G H G++
Sbjct: 183 RRIAEEQGLVTAKKKDSTGICFIGERKFTDFLSKYLP--AQPGIIETVDGKKIGEHQGLM 240

Query: 261 NYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR-----EI 308
            +T+GQR+GL       G     P +VV  DK+  R ++   +  +  R++ +     ++
Sbjct: 241 YHTLGQRKGLHIGGQKGGNGNEAPWYVV--DKDVERNVLIVAQGHDHPRLFSKGLIAAQL 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367
           +W+        + +  KC VK R  Q  +   ++  D D + V F++ +  V  GQ+ VF
Sbjct: 299 HWVD----RKTMTEPLKCTVKTRYRQQDISCTIEPIDGDQIKVIFDEPQAAVTPGQSAVF 354

Query: 368 YTSDSNEARVLGGGIIS 384
           Y+ D      LGGGII 
Sbjct: 355 YSGDV----CLGGGIIE 367


>gi|229515510|ref|ZP_04404969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TMA 21]
 gi|229520442|ref|ZP_04409867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TM 11079-80]
 gi|229525739|ref|ZP_04415144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae bv. albensis VL426]
 gi|229529783|ref|ZP_04419173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 12129(1)]
 gi|229333557|gb|EEN99043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 12129(1)]
 gi|229339320|gb|EEO04337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae bv. albensis VL426]
 gi|229342540|gb|EEO07533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TM 11079-80]
 gi|229347279|gb|EEO12239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TMA 21]
 gi|327483833|gb|AEA78240.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Vibrio cholerae LMA3894-4]
          Length = 371

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 244 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 302 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 357

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 358 GEI----CLGGGIIE 368


>gi|224536253|ref|ZP_03676792.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522139|gb|EEF91244.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 359

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 195/384 (50%), Gaps = 49/384 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  D RV+V MSGG+DS+    +LK  GY+++G+T+ ++              G +  +A
Sbjct: 2   NSPDKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVW--------------GDEPVEA 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R++  ++ + H+V D  E FR  ++  F   Y  G TP PCV CN T KF  L     +L
Sbjct: 48  RQLAGSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKL 107

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           G   ++TGHY R      ++Y+  GDD K            +DQSYFL+   Q  L    
Sbjct: 108 GCAFISTGHYSRLEEKNGKIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCI 155

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVK----RINAGIALEGD 244
           FPLG   K  VR+  RE G  + A++ +S ++CF+ +G Y D ++     I++ I   G 
Sbjct: 156 FPLGTYTKLQVREYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSAIG-PGW 213

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            V   G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L    + 
Sbjct: 214 FVSSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTEYML 273

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
             + N + +  F  A        V+IR    P+P  V+R +DG ++V F      +A GQ
Sbjct: 274 TEQDNLIDEQEFFSAS----DLTVRIRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQ 329

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
           + VFY       RV+GG  I+  +
Sbjct: 330 SAVFYIG----RRVVGGSFIASQR 349


>gi|330954571|gb|EGH54831.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7]
          Length = 357

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 190/364 (52%), Gaps = 26/364 (7%)

Query: 29  GGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY 88
           GGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD I +  +
Sbjct: 1   GGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCDKIGIKLH 57

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148
             ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++ATGHY+R
Sbjct: 58  TANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHYVR 117

Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
            R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR +A + G
Sbjct: 118 RR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVRAIAEKHG 172

Query: 209 LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRR 268
           L  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ +TIGQR+
Sbjct: 173 LATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMYHTIGQRQ 230

Query: 269 GLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAV 320
           GLG+     A  +P +V+  D +++ +IVG       L    +   EI W+        +
Sbjct: 231 GLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN----PIDL 286

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +      LGG
Sbjct: 287 SSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI----CLGG 342

Query: 381 GIIS 384
           G+I 
Sbjct: 343 GVIE 346


>gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella benthica KT99]
 gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella benthica KT99]
          Length = 376

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 205/378 (54%), Gaps = 36/378 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMKNWEEDDTDE---YCAAADDLKDAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 70  KLGIKLHTVNFAAEYWDKVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADEILDADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      + G+ R  M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 130 IAMGHYVRR---CDETGQSR--MLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G+H G++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLP--AQPGNIETAEGEVIGKHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  + + + ++VG     PR  L     Y  +++W
Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPR--LMSMGFYADQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDG---VYVDFEKSEVGVASGQAC 365
           +         ++  +  VK R  Q  V   +F++ ND G   + V F++    V  GQ+ 
Sbjct: 301 VD----RKGPINEARITVKTRYRQRDVACTLFLENNDKGEDTIRVLFDEPVAAVTPGQSA 356

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY+ +      LGGGII
Sbjct: 357 VFYSDE----LCLGGGII 370


>gi|302537071|ref|ZP_07289413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. C]
 gi|302445966|gb|EFL17782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. C]
          Length = 379

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 195/377 (51%), Gaps = 27/377 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70
           +L +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  
Sbjct: 4   NLPRTARPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 62

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  Y +D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 63  EDSRDARRAADVIGIPFYCWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALL 122

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY  + +    DG R   + R  D+ +DQSY L    ++QL    F
Sbjct: 123 DKALALGFDAVCTGHY--ATIVENADGSRE--LHRASDMAKDQSYVLGVLDEKQLAHALF 178

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247
           PLGD    K+ +R  A   GL +A K DS DICF+  G     + KR+      EGDIV 
Sbjct: 179 PLGDTITTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAKRLGKA---EGDIVD 235

Query: 248 -LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHR 302
              G+ +G H+G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  
Sbjct: 236 GATGEKVGTHDGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTA 295

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           +      W G                ++R+      VF +  D  + V F +   GVA G
Sbjct: 296 LTAIRPRWCGSTPAAPGTYT-----AQLRAHGGETEVFAEVVDGELRVTFTEPVRGVAPG 350

Query: 363 QACVFYTSDSNEARVLG 379
           QA V Y    ++ RV+G
Sbjct: 351 QAIVLY----DDTRVVG 363


>gi|268589250|ref|ZP_06123471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rettgeri DSM 1131]
 gi|291315435|gb|EFE55888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rettgeri DSM 1131]
          Length = 366

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDTEY---CSAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     DGK +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVRRR---DIDGKSQ--LLRGLDGNKDQSYFLYTLSHEQVAKSLFPVGELEKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G+H G++
Sbjct: 179 RRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQHEGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  + +  +C VK R  Q  +P  +   +DD + V F+     V  GQ+ VFY  +
Sbjct: 297 ----RKTMTEPLRCVVKTRYRQADIPCTITPLSDDRIEVAFDYPVAAVTPGQSAVFYIDE 352

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 353 V----CLGGGIIE 361


>gi|167765362|ref|ZP_02437475.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC
           43183]
 gi|167696990|gb|EDS13569.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC
           43183]
          Length = 361

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 194/378 (51%), Gaps = 33/378 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + N  + RV+V MSGG+DS+    +L+  GY+++G+T+ ++ +  A              
Sbjct: 6   NMNKSEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVWGNEPA-------------- 51

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +AR + D++ + H+V D  E FR  ++  F   Y  G TP PCV CN   KF  L     
Sbjct: 52  EARNLADSMGIEHHVADEREAFRQIIVQNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 111

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L    +ATGHY R      ++  R+  +    D ++DQSYFL+   Q  L    FPLG 
Sbjct: 112 KLNCRYIATGHYTRL-----EEQNRKIYIVAGDDDKKDQSYFLWRLGQDVLRRCLFPLGT 166

Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250
             K  VRD  R+ G    A++ +S ++CF+ +G Y D ++  +  I  E   G  V+  G
Sbjct: 167 YTKMQVRDYLRDKGYAPKAEEGESMEVCFI-KGDYRDFLREHSPEIDNEVGPGWFVNSEG 225

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N 
Sbjct: 226 VKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAEYMLAEQDNL 285

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           + +G     V    +  V+IR    P+P  V+R +DG + V FE     +A GQ+ VFY 
Sbjct: 286 IDEG----EVFGSGELTVRIRYRSKPIPCSVKRLEDGRLLVHFETEASAIAPGQSAVFYI 341

Query: 370 SDSNEARVLGGGIISGSK 387
                 RV+GG  I+  +
Sbjct: 342 G----KRVVGGSFIASQR 355


>gi|71281561|ref|YP_269601.1| tRNA-specific 2-thiouridylase MnmA [Colwellia psychrerythraea 34H]
 gi|123632113|sp|Q480B8|MNMA_COLP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71147301|gb|AAZ27774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Colwellia psychrerythraea 34H]
          Length = 375

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 197/383 (51%), Gaps = 35/383 (9%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P+  +V+V MSGGVDSSV A LLK  GY V G+ ++ +      +    C A QD+ D
Sbjct: 8   KAPEQTKVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDTDEY---CAASQDLED 64

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-R 134
           A+ +CD +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 65  AQAICDKLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFACE 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY++  L   D+  +   M R +D  +DQSYFL+   + QL    FP+G 
Sbjct: 125 DLGADYIATGHYVQRELR--DNSWK---MIRGLDNNKDQSYFLYTLDEAQLAHTLFPVGH 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL   +K DS  ICF+ + K+ D + +     A  G I    G  +G
Sbjct: 180 IEKPEVRAIAEKAGLITHNKKDSTGICFIGERKFKDFLGQYLP--AQPGIIESAEGVAVG 237

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIY 304
            H+G++ +T+GQR+GL +     A  EP +VV  D   + +IVG     PR  L    + 
Sbjct: 238 HHDGLMYHTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIVGQGHNHPR--LFSKGLI 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV----YVDFEKSEVGVA 360
             +++W+       A+    +C VK R  Q+ V   V    D       +DF + +  V 
Sbjct: 296 ANQLHWVD----RKALTSSIQCTVKTRYRQEDVSCTVTPITDSATEEYQIDFTEQQSSVT 351

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ+ VFY  D      LGGGII
Sbjct: 352 PGQSVVFYKDDV----CLGGGII 370


>gi|227111563|ref|ZP_03825219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
 gi|227327064|ref|ZP_03831088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 368

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 201/376 (53%), Gaps = 33/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       DGK R  + R MD  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ + + + +G+H G+
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237

Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+      GE P +VV  DK+ +  I+   +  E  R+       ++++
Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVV--DKDVANNILYVAQGHEHPRLMSYGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+        +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ VFY
Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGGII 
Sbjct: 352 LDDV----CLGGGIIE 363


>gi|187730842|ref|YP_001879941.1| tRNA-specific 2-thiouridylase MnmA [Shigella boydii CDC 3083-94]
 gi|205816914|sp|B2TZ86|MNMA_SHIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187427834|gb|ACD07108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii CDC 3083-94]
          Length = 368

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + N V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|262372981|ref|ZP_06066260.1| tRNA methyl transferase [Acinetobacter junii SH205]
 gi|262313006|gb|EEY94091.1| tRNA methyl transferase [Acinetobacter junii SH205]
          Length = 377

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 204/374 (54%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R  +   +  G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGVSTQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RRIAEQLDLATAKKKDSTGICFIGERRFTDFLKQYLPAQA--GKIVLDNGKEVGEHHGLM 238

Query: 261 NYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT+GQR      G+  A     FV++ D  ++R+++G       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGIGGMKGAQEGAWFVLHKDIANNRLVIGQGHEHPLMQSKQLWSEAIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVFYT 369
               ++    GF+C  K R  Q      + R+   ++G+ V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QEIPTTGFRCTAKTRYRQPDQACTIYRDEHTENGIRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 GEV----CLGGGVI 366


>gi|73855169|gb|AAZ87876.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 383

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R   G 
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQ 232

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
              G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  V+  
Sbjct: 233 P--GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|311085999|gb|ADP66081.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086574|gb|ADP66655.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087155|gb|ADP67235.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087689|gb|ADP67768.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 392

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++   + +   ++G C + +D+ DA  +C  +N
Sbjct: 35  VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 91

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 92  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258
           A+++ L IA K DS  ICF+         K++   ++L     +GDIV ++G+++G+H+G
Sbjct: 207 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259

Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308
           +  YTIGQR+GLG+    GE   P +VV  +KN  + +++  + S   H + +    + I
Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 317

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VF
Sbjct: 318 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVF 373

Query: 368 YTSDSNEARVLGGGII 383
           Y SD      +GGGII
Sbjct: 374 YVSDI----CIGGGII 385


>gi|262402513|ref|ZP_06079074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC586]
 gi|262351295|gb|EEZ00428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC586]
          Length = 371

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 198/375 (52%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+GD++K  V
Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQVTRSLFPVGDLEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 244 YHTLGQRKGLHIGGMKESNEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +    +  ++D + V F+  +V V  GQ+ VFY 
Sbjct: 302 VD----RTPITEPLRCSVKTRYRQSDIACTIIPLSNDRIKVMFDDPQVAVTPGQSAVFYQ 357

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 358 GEI----CLGGGIIE 368


>gi|119775197|ref|YP_927937.1| tRNA-specific 2-thiouridylase MnmA [Shewanella amazonensis SB2B]
 gi|205816912|sp|A1S7B1|MNMA_SHEAM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119767697|gb|ABM00268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella amazonensis SB2B]
          Length = 377

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 198/374 (52%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 18  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLKDAQAVCD 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 75  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 134

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R     DGK    M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 135 IAMGHYVRRR---DTDGKTE--MLRGIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 189

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL   DK DS  ICF+ + K+ D +       A  G+I    G I+GRH G++
Sbjct: 190 RRIAEEQGLITHDKKDSTGICFIGERKFKDFLATYLP--AQPGNIETPEGDIIGRHEGLM 247

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310
            +T+GQR+GLG+     +  +P +VV  DK+ +R ++   +  E  R+      + +++W
Sbjct: 248 YHTLGQRKGLGIGGMKNSNDDPWYVV--DKDMARNVLVVAQGHEHPRLMSKGMRVNQLHW 305

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
           +          DG    VK R  Q  +P  V+  D+  + V F++    V  GQ+ VFY 
Sbjct: 306 VD----RTGPADGATISVKTRYRQQDIPCTVKIIDEQTIEVLFDEPVAAVTPGQSAVFYD 361

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 362 GEV----CLGGGII 371


>gi|219682184|ref|YP_002468568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621917|gb|ACL30073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
          Length = 368

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++   + +   ++G C + +D+ DA  +C  +N
Sbjct: 11  VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 67

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 68  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258
           A+++ L IA K DS  ICF+         K++   ++L     +GDIV ++G+++G+H+G
Sbjct: 183 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235

Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308
           +  YTIGQR+GLG+    GE   P +VV  +KN  + +++  + S   H + +    + I
Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VF
Sbjct: 294 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVF 349

Query: 368 YTSDSNEARVLGGGII 383
           Y SD      +GGGII
Sbjct: 350 YVSDI----CIGGGII 361


>gi|205822400|sp|Q030C8|MNMA_LACLS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 376

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 4   KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 61  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R    +DG     M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 121 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG  +      +Y   ++
Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 292

Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
              D  F   + + F   C  K R  Q+   V +    D V VDF++    +  GQA VF
Sbjct: 293 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVVF 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGG +I  + +   V
Sbjct: 352 YDGE----ECLGGAMIDVAYKEQKV 372


>gi|317052362|ref|YP_004113478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurispirillum indicum S5]
 gi|316947446|gb|ADU66922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurispirillum indicum S5]
          Length = 345

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 189/369 (51%), Gaps = 38/369 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VAMSGGVDSS+   LL   GY V G  ++L+ + +  +        Q++    RV  
Sbjct: 7   KVLVAMSGGVDSSMTTKLLLEQGYPVEGCYMKLHGNEQMHE--------QNIARVERVAR 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             N+  +V D ++ F  +V  PF   Y+ G+TP PC  CNR +KF  L    R+L    L
Sbjct: 59  YFNIPWHVLDRQDLFHQSVYQPFIDIYSQGQTPNPCTFCNRLIKFGTLFEFARELDCHHL 118

Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY++     +Y GDD              +DQSYFLF    + +  L FPLG  +K 
Sbjct: 119 ATGHYVKCDGQYIYQGDDPG------------KDQSYFLFNIEPRIIPHLLFPLGSWRKS 166

Query: 199 SVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            V+ +A ++ L   +A + +S +ICFV+   Y DV+ R +  +   G ++  +G ++G H
Sbjct: 167 DVKAMAADIPLLASLATQKESSEICFVED-SYIDVL-REHLQVDQPGKVLDTSGNVVGSH 224

Query: 257 NGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YT+GQR+G  V +    L+V  +   ++ ++VG RE + + R  +R++N     L
Sbjct: 225 RGYMHYTVGQRKGFDVPLSHTALYVKQILPKTNELVVGTREEINLQRFAVRDLN-----L 279

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
           F       F C VK+R      P  V     G   ++ E+ E  +A GQA  FY      
Sbjct: 280 FLPDPGQEFTCEVKVRYRNPKAPARVLLGAGGSATIELERPEYAIAPGQAAAFYEG---- 335

Query: 375 ARVLGGGII 383
            R+LGGG I
Sbjct: 336 TRLLGGGYI 344


>gi|261415477|ref|YP_003249160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371933|gb|ACX74678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 366

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 196/364 (53%), Gaps = 31/364 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKG-SCCAG----QDVYD 75
           RV V +SGGVDS++ A LLK+ GY+V+G+T+  ++ S K    +G   C G    +++ +
Sbjct: 6   RVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKNIEE 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V + + + HYV    E ++  V+  F + Y AG TP PCV CN+++KF  L    R+
Sbjct: 66  AKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHAARK 125

Query: 136 LGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG D    ATGHY R      D       +   +D  +DQ+YFL   + +QL  + FPLG
Sbjct: 126 LGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIFPLG 181

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKY---FDVVKRINAGIALEGDIVHLN 249
            M+K  V+ LA+E+G  D A K +SQD  F++ G Y   FD    +       GD + +N
Sbjct: 182 GMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESDNV------PGDFIDVN 233

Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G++LG+H GI++YTIGQR+GL +    EPL+VV +D + ++VI+GPR +L    +   ++
Sbjct: 234 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQAC 365
           N +   + E + +        IR         +   D     + V F++ +   A GQ  
Sbjct: 294 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 350

Query: 366 VFYT 369
           V Y 
Sbjct: 351 VLYA 354


>gi|91793184|ref|YP_562835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella denitrificans OS217]
 gi|91715186|gb|ABE55112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella denitrificans OS217]
          Length = 377

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 197/373 (52%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY+V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 17  KVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 74  KLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 133

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 134 IAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 189

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           RD+A++MGL   DK DS  ICF+ + K+ D +       A  GDI    G+++G+H G++
Sbjct: 190 RDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETPEGEVIGKHQGLM 247

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   + +IV   G    L    + + +++W+ 
Sbjct: 248 YHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVNQLHWVD 307

Query: 313 -DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
             G   D+     +  VK R  Q  VP  +  +D   + V F+     V  GQ+ VFY  
Sbjct: 308 RKGPATDS-----QLVVKTRYRQTDVPCRISFDDPQRITVIFDSPVAAVTPGQSAVFYDG 362

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 363 DV----CLGGGII 371


>gi|117920194|ref|YP_869386.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. ANA-3]
 gi|166235083|sp|A0KW11|MNMA_SHESA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117612526|gb|ABK47980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. ANA-3]
          Length = 372

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 200/374 (53%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADDILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A++MGL   DK DS  ICF+ + K+ + +   N   A  G+I    G+I+G+H G++
Sbjct: 185 REIAKKMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETAEGEIIGKHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
             T+GQR+GLG+     +  +P +VV  D   + ++VG     PR  L  + + + +++W
Sbjct: 243 YQTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMLVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G +  VK R  Q  +P      +D+ + V F++    V  GQ+ VFY 
Sbjct: 301 VD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 357 GEV----CLGGGII 366


>gi|116511650|ref|YP_808866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107304|gb|ABJ72444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 384

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 12  KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 69  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R    +DG     M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 129 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG  +      +Y   ++
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 300

Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
              D  F   + + F   C  K R  Q+   V +    D V VDF++    +  GQA VF
Sbjct: 301 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVVF 359

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGG +I  + +   V
Sbjct: 360 YDGE----ECLGGAMIDVAYKEQKV 380


>gi|57234425|ref|YP_181511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides ethenogenes 195]
 gi|123618735|sp|Q3Z8D8|MNMA_DEHE1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57224873|gb|AAW39930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides ethenogenes 195]
          Length = 357

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 183/362 (50%), Gaps = 20/362 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VAMSGGVDSSV A LL   GYDV GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 8   IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL       A  LA
Sbjct: 65  LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLEKIPDFNAGYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY  +R+   ++G     + +  D ++DQSYFL+    + L  L FPLG   K+ +  
Sbjct: 125 TGHY--ARVLSDENGTH---LLKGADEKKDQSYFLYTLPPESLSRLIFPLGKRYKKDIIR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA +M L ++ K +SQD+CF+  G Y   +     G    G I+   G+ILG H G+  Y
Sbjct: 180 LADKMKLPVSQK-ESQDVCFIPDGDYKSFLA-TRMGFT-PGKILDKTGKILGEHQGLPLY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A  E LFV  ++  ++ ++V   + L   RI L    W    +     +D
Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTIMVASHDQLYTSRILLSNFIWRESRI----PLD 292

Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VK+R    P  V  + +  D   ++          GQA V Y  D     VLGGG
Sbjct: 293 TPGMIVKVRYKAAPAEVKKISQTGDFYLLELASPVWAATPGQAAVIYLGD----MVLGGG 348

Query: 382 II 383
           II
Sbjct: 349 II 350


>gi|302325766|gb|ADL24967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 390

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 196/364 (53%), Gaps = 31/364 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKG-SCCAG----QDVYD 75
           RV V +SGGVDS++ A LLK+ GY+V+G+T+  ++ S K    +G   C G    +++ +
Sbjct: 30  RVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKNIEE 89

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V + + + HYV    E ++  V+  F + Y AG TP PCV CN+++KF  L    R+
Sbjct: 90  AKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHAARK 149

Query: 136 LGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG D    ATGHY R      D       +   +D  +DQ+YFL   + +QL  + FPLG
Sbjct: 150 LGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIFPLG 205

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKY---FDVVKRINAGIALEGDIVHLN 249
            M+K  V+ LA+E+G  D A K +SQD  F++ G Y   FD    +       GD + +N
Sbjct: 206 GMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESDNV------PGDFIDVN 257

Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G++LG+H GI++YTIGQR+GL +    EPL+VV +D + ++VI+GPR +L    +   ++
Sbjct: 258 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 317

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQAC 365
           N +   + E + +        IR         +   D     + V F++ +   A GQ  
Sbjct: 318 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 374

Query: 366 VFYT 369
           V Y 
Sbjct: 375 VLYA 378


>gi|205822016|sp|Q12N64|MNMA_SHEDO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 197/373 (52%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY+V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 69  KLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           RD+A++MGL   DK DS  ICF+ + K+ D +       A  GDI    G+++G+H G++
Sbjct: 185 RDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETPEGEVIGKHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   + +IV   G    L    + + +++W+ 
Sbjct: 243 YHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVNQLHWVD 302

Query: 313 -DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
             G   D+     +  VK R  Q  VP  +  +D   + V F+     V  GQ+ VFY  
Sbjct: 303 RKGPATDS-----QLVVKTRYRQTDVPCRISFDDPQRITVIFDSPVAAVTPGQSAVFYDG 357

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 358 DV----CLGGGII 366


>gi|25298369|pir||C84960 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [imported] - Buchnera sp. (strain APS)
 gi|10038936|dbj|BAB12971.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 392

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++   + +   ++G C + +D+ DA  +C  +N
Sbjct: 35  VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 91

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 92  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258
           A+++ L IA K DS  ICF+         K++   ++L     +GDIV ++G+++G+H+G
Sbjct: 207 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259

Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308
           +  YTIGQR+GLG+    GE   P +VV  +KN  + +++  + S   H + +    + I
Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 317

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VF
Sbjct: 318 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVF 373

Query: 368 YTSDSNEARVLGGGII 383
           Y SD      +GGGII
Sbjct: 374 YVSDI----CIGGGII 385


>gi|32266455|ref|NP_860487.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter hepaticus ATCC
           51449]
 gi|81657428|sp|Q7U320|MNMA_HELHP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|32262506|gb|AAP77553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter hepaticus ATCC 51449]
          Length = 345

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 34/373 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA--RR 78
           M+V + MSGGVDSS  A LL   GY+VIG+ L+L++  K            D+Y A   +
Sbjct: 1   MKVALLMSGGVDSSYCAHLLSSQGYEVIGIYLKLHDKNKK----------HDIYIANCEQ 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++   V D  E F+ +V   F SSY  G+TP PC  CN  +KF   L    +LG 
Sbjct: 51  VAAHLHIDFQVLDLREEFKKSVYDTFVSSYKEGKTPNPCAICNPLMKFGLGLQKALELGC 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY + +     +G +R  + + +D  +DQSYFL+A  Q+ +  + FPLG + KE
Sbjct: 111 DYIATGHYAQIKEV---NGIKR--IAKAVDESKDQSYFLYALPQEAIDRIIFPLGALLKE 165

Query: 199 SVRDLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            ++  A E+      +    +SQ+ICFV+Q  Y D++K ++  +  EG + + NG+ +G 
Sbjct: 166 DIKKTALELLPFLGTLQTYKESQEICFVEQS-YIDILK-LHDKVDNEGVVRNSNGKAIGT 223

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G ++YTIG+R+G  V    EP +V  ++  ++ ++VG +E L +  I  + +N     
Sbjct: 224 HKGYMHYTIGKRKGFSVFGSHEPHYVKAINPQNNEIVVGTKEELAIDSI--KALNKSLPQ 281

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            F   + D     VK+R    P+   +    + +Y    +S  GVA GQA V Y  D   
Sbjct: 282 AFNGGIYD-----VKVRYRSTPLKAQIDIQGEFIYAKLLESAYGVAQGQALVLYQEDC-- 334

Query: 375 ARVLGGGIISGSK 387
             VLGGG+I+ ++
Sbjct: 335 --VLGGGVITQAQ 345


>gi|28952048|ref|NP_240085.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11135216|sp|P57349|MNMA_BUCAI RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++   + +   ++G C + +D+ DA  +C  +N
Sbjct: 11  VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 67

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 68  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258
           A+++ L IA K DS  ICF+         K++   ++L     +GDIV ++G+++G+H+G
Sbjct: 183 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235

Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308
           +  YTIGQR+GLG+    GE   P +VV  +KN  + +++  + S   H + +    + I
Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VF
Sbjct: 294 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVF 349

Query: 368 YTSDSNEARVLGGGII 383
           Y SD      +GGGII
Sbjct: 350 YVSDI----CIGGGII 361


>gi|81241404|gb|ABB62114.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 383

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 210/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R       DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAKSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  I L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSIGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|205822022|sp|A8H5M1|MNMA_SHEPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R     DG  +  M R +D  +DQSYFL+    +Q+    FP+G++ K  V
Sbjct: 129 IAMGHYVRRRDI---DGTSQ--MLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKSEV 183

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G H G++
Sbjct: 184 REIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQGLM 241

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L  + +   +++W
Sbjct: 242 YHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPR--LMSNGLVANQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G K  VK R  Q  VP  V  + DD + V F++    V  GQ+ VFY 
Sbjct: 300 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 355

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 356 GEI----CLGGGII 365


>gi|301167152|emb|CBW26731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteriovorax marinus SJ]
          Length = 382

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 18/379 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ ++  V+V MSGGVDSSV AA+LK  GY+VIG+ ++ +  +  +   G C + ++  D
Sbjct: 11  KSNEETTVIVGMSGGVDSSVCAAVLKEQGYNVIGMFMKNWEEQDEN---GVCQSSKEYAD 67

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC+ +++ +Y  D+ + +R+ V   F   Y AG TP P + CNR +KF   L+   +
Sbjct: 68  VISVCEKLDIPYYSVDFVKEYRDNVFQHFLDEYEAGFTPNPDILCNREIKFKVFLNKALE 127

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY ++ L  G++      + +  D  +DQ+YFL+   +++L  + FP+G +
Sbjct: 128 LGADYLATGHYCQNILIDGENH-----LVKGNDPGKDQTYFLYTMKKEKLEHVHFPIGHL 182

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR LA +  L    K DS  ICF+ +  + + +   N      G    L+G+ +G 
Sbjct: 183 PKTEVRKLAEKFDLSTKHKKDSTGICFIGERNFKNFLS--NYIQIKPGKFETLSGEEVGE 240

Query: 256 HNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL 311
           H+G   YTIGQR+       G P FVV  D   + VIV   E   +L    ++  EI+W+
Sbjct: 241 HSGSAYYTIGQRKGLGLGGPGAPWFVVGKDTKRNVVIVERGEDHPALFFDELWADEISWV 300

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
             G F+  +    KC  KIR  Q+     + + +DG ++V F++++  VA  Q+ VFYT 
Sbjct: 301 S-GEFKGELP--LKCKAKIRYRQEDQDCTITKIEDGELHVQFDQAQRAVALRQSIVFYTQ 357

Query: 371 DSNEARVLGGGIISGSKRS 389
               A  LGG +IS + +S
Sbjct: 358 VQGHAVCLGGAMISRAGKS 376


>gi|312172139|emb|CBX80396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ G+ V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +     DGK R  + R +D  +DQSYFL+  + QQ+    FP+G++ K  V
Sbjct: 124 IATGHYARRQ---DVDGKSR--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELAKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+H G++
Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +   +    +    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ VFY 
Sbjct: 295 VDRNVLSAPL----RCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 351 DEV----CLGGGIIE 361


>gi|24051447|gb|AAN42769.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040928|gb|AAP16658.1| hypothetical protein S1235 [Shigella flexneri 2a str. 2457T]
 gi|281600566|gb|ADA73550.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Shigella flexneri 2002017]
          Length = 383

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  V+  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIKV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|157962359|ref|YP_001502393.1| tRNA-specific 2-thiouridylase MnmA [Shewanella pealeana ATCC
           700345]
 gi|157847359|gb|ABV87858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella pealeana ATCC 700345]
          Length = 398

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 39  KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 95

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 96  KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 155

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R     DG  +  M R +D  +DQSYFL+    +Q+    FP+G++ K  V
Sbjct: 156 IAMGHYVRRRDI---DGTSQ--MLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKSEV 210

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G H G++
Sbjct: 211 REIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQGLM 268

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D   + +IVG     PR  L  + +   +++W
Sbjct: 269 YHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPR--LMSNGLVANQLHW 326

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G K  VK R  Q  VP  V  + DD + V F++    V  GQ+ VFY 
Sbjct: 327 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 382

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 383 GEI----CLGGGII 392


>gi|93005976|ref|YP_580413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter cryohalolentis K5]
 gi|122415456|sp|Q1QBM4|MNMA_PSYCK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|92393654|gb|ABE74929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter cryohalolentis K5]
          Length = 408

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 24/383 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +P    V+V MSGGVDSSV A LL++ G+ V G+ ++ +     ++    C A  D+ D
Sbjct: 28  NDPSTKHVIVGMSGGVDSSVSAVLLQQAGFMVEGLFMKNWEEDDGTEY---CTAMDDLAD 84

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 85  AQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLDYALT 144

Query: 136 LGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LGAD +ATGHY R  + Y  +DG     + R +D  +DQSYFL A    +L    FP+G+
Sbjct: 145 LGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAVGGDKLAKTLFPVGE 204

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           +KK  VR +A E  L  A+K DS  ICF+ + ++ D +++     A +GDIV  +G  +G
Sbjct: 205 LKKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--AQKGDIVTDDGITIG 262

Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
            H+G++ YT+GQR G+G+        EP FV+  D +++R+IVG       +  + +   
Sbjct: 263 THDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQGHEHAMMLSNELQAY 322

Query: 307 EINWLGDGLFEDAVV--DGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDFEKSEVGVAS 361
           +++W+ D L    +   DG +C  K R  Q D        N++G  V V F++ +  V  
Sbjct: 323 KLDWV-DVLPPADIFSEDGLRCMAKSRYRQPDQACTVFANNENGSEVRVVFDEPQRAVTP 381

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY  +      LGGG+I+
Sbjct: 382 GQSAVFYIDEV----CLGGGVIA 400


>gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
          Length = 375

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 191/379 (50%), Gaps = 25/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ K  V
Sbjct: 124 IAMGHYAKTV----KDADGLTHMMRPKDGNKDQTYFLNQLNQDQIKKVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL IA K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 180 REIALANGLAIAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F
Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYASRLKASDMSFF 295

Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSD 371
               D  V+ F C  K R  Q  V V V+ + D    D  F++    V  GQA V Y  +
Sbjct: 296 TGKPDHDVE-FHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGE 354

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGGG I  + + D
Sbjct: 355 ----ECLGGGNIDAAYQED 369


>gi|154173866|ref|YP_001408766.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter curvus 525.92]
 gi|205811591|sp|A7GZX4|MNMA_CAMC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112802625|gb|EAT99969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter curvus 525.92]
          Length = 339

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 201/369 (54%), Gaps = 35/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS++ A +LK  G+++ G  ++L+      +        +++   ++V 
Sbjct: 1   MKIMVAMSGGVDSTMTAKILKEAGHEIEGCYMKLHQKPGYHE--------ENIRKVKKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D +++F   V  PF   Y  G+TP PC  CNR +K   LL+  +Q G + 
Sbjct: 53  EYLGIKVHILDLQDKFNEFVYDPFVRLYKEGKTPNPCALCNRFIKLGALLNFAKQNGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY++       DG     +    D  +DQSYFL    ++ L D+ FPLGD  K  +
Sbjct: 113 LATGHYVQII-----DG----FVTMAKDPSKDQSYFLAQVPKEVLKDVIFPLGDKFKADI 163

Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LARE+ +  + A + +S +ICFV+   Y +++ + +    L G++V  NG ++GRH G
Sbjct: 164 KELAREVPVLNEFATQPESSEICFVED-TYIEILNK-HYNTNLPGNVVDKNGNVIGRHQG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++ + + ++VG ++ L    + L  +N     LF 
Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLKINADKNEIVVGSKDDLAQKIVELENVN-----LFI 276

Query: 318 DAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D   D F+C  KI  RS +    V + + +    V   ++ +GVA GQ CV Y  +    
Sbjct: 277 DE--DEFECETKIRYRSPKLEASVKIDKQNKTAVVALSQNALGVAQGQLCVMYDGE---- 330

Query: 376 RVLGGGIIS 384
           RV+  G I 
Sbjct: 331 RVIASGFIK 339


>gi|300816836|ref|ZP_07097056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 107-1]
 gi|300821083|ref|ZP_07101232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 119-7]
 gi|300906948|ref|ZP_07124620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 84-1]
 gi|300917906|ref|ZP_07134539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 115-1]
 gi|300922663|ref|ZP_07138760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 182-1]
 gi|300928309|ref|ZP_07143845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 187-1]
 gi|300949484|ref|ZP_07163481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 116-1]
 gi|300955539|ref|ZP_07167901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 175-1]
 gi|301306077|ref|ZP_07212155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 124-1]
 gi|301328492|ref|ZP_07221558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 78-1]
 gi|301644551|ref|ZP_07244544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 146-1]
 gi|309796520|ref|ZP_07690927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 145-7]
 gi|331641677|ref|ZP_08342812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H736]
 gi|331652184|ref|ZP_08353203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M718]
 gi|331676926|ref|ZP_08377622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H591]
 gi|300317578|gb|EFJ67362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 175-1]
 gi|300401295|gb|EFJ84833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 84-1]
 gi|300414896|gb|EFJ98206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 115-1]
 gi|300421012|gb|EFK04323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 182-1]
 gi|300451104|gb|EFK14724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 116-1]
 gi|300463695|gb|EFK27188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 187-1]
 gi|300526382|gb|EFK47451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 119-7]
 gi|300530610|gb|EFK51672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 107-1]
 gi|300838649|gb|EFK66409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 124-1]
 gi|300845099|gb|EFK72859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 78-1]
 gi|301077133|gb|EFK91939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 146-1]
 gi|308119832|gb|EFO57094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 145-7]
 gi|315135765|dbj|BAJ42924.1| trmU [Escherichia coli DH1]
 gi|315254893|gb|EFU34861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 85-1]
 gi|324017533|gb|EGB86752.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 117-3]
 gi|331038475|gb|EGI10695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H736]
 gi|331050462|gb|EGI22520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M718]
 gi|331075615|gb|EGI46913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H591]
 gi|332102031|gb|EGJ05377.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 383

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  V+  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|161503672|ref|YP_001570784.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865019|gb|ABX21642.1| hypothetical protein SARI_01756 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 383

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 213/398 (53%), Gaps = 36/398 (9%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           MV   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MVEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R    V  +GK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRR---VDINGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV 292
             A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV
Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288

Query: 293 G-----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDD 346
                 PR  L    +  ++++W+    F   +     C VK R  Q  +P  +   +DD
Sbjct: 289 AQGHEHPR--LMSSGLIAQQLHWVDREPFTGTL----SCTVKTRYRQTDIPCTINALDDD 342

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + V F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 343 RIEVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|188534099|ref|YP_001907896.1| tRNA-specific 2-thiouridylase MnmA [Erwinia tasmaniensis Et1/99]
 gi|188029141|emb|CAO97013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia tasmaniensis Et1/99]
          Length = 369

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIYLHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+    +Q+    FP+G++ K  V
Sbjct: 124 IATGHYVRRQ---DVDGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELAKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+H G++
Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLSRYLP--AQPGPILSVDGDNVGQHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGRKEANDDPWYVVDKDVANNVLVVAQGHEHPR--LMSTGLIAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +      D++    +C VK R  Q  +P  V   D + + V F+     V  GQ+ VFY 
Sbjct: 295 VD----RDSLTTPLRCTVKTRYRQQDIPCTVTPVDAERIEVRFDFPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 351 DEV----CLGGGIIE 361


>gi|16419753|gb|AAL20163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261246446|emb|CBG24256.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase EC 2.1.1.61
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|323129504|gb|ADX16934.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 383

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           M+   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MIEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++
Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  +   NDD +
Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALNDDRI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|81245791|gb|ABB66499.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 383

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  V+  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCSVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|260495095|ref|ZP_05815224.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
 gi|260197538|gb|EEW95056.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
          Length = 343

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 193/366 (52%), Gaps = 28/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  Y    +          +D+ D ++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQYLEENS----------KDIEDTKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY     S ++       + ++     + +DQSY L+  +  +L  L FPL    K+
Sbjct: 113 ATGHYTSVEYSEIF------SKYLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQ 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A ++GL+I +K DSQ ICF ++G Y + +K       + G+ V  +G ILG H G
Sbjct: 167 EIREIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDKIVRGNYVDKDGNILGEHEG 225

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YT+GQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L  IN+     +E 
Sbjct: 226 YQLYTMGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVEL--INYKFSVEYEK 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             ++  +   + R S       + ++ D +Y  + +     A GQ  VF+     +  V+
Sbjct: 284 --LENLELLARPRFSSTGFYGKIIKDKDKIYFKYNEENAHNAKGQHIVFFY----DGFVV 337

Query: 379 GGGIIS 384
           GGG I 
Sbjct: 338 GGGEIK 343


>gi|254291552|ref|ZP_04962342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae AM-19226]
 gi|150422504|gb|EDN14461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae AM-19226]
          Length = 372

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 198/375 (52%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 70  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310
            +T+GQR+GL +     +  +P +V   DK+  R ++          L+ H +   +++W
Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q D     +  +DD + V F++ +V V  GQ+ VFY 
Sbjct: 303 VD----RTPITGPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 359 GEI----CLGGGIIE 369


>gi|293414424|ref|ZP_06657073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B185]
 gi|291434482|gb|EFF07455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B185]
          Length = 368

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R    V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVRR---VDVDGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGKVCLGGGIIE 361


>gi|165923972|ref|ZP_02219804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 334]
 gi|165916580|gb|EDR35184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 334]
          Length = 362

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 67  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLEHAKKLGATHLA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 239

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 354 ECLGGGIIN 362


>gi|293396528|ref|ZP_06640804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia odorifera DSM 4582]
 gi|291420792|gb|EFE94045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia odorifera DSM 4582]
          Length = 370

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDV---DGKNR--LLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV ++GQ +G H G++
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGQTIGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  D  +++++V      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNQLVVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  +   V   D + + V F++    V  GQ+ VFY 
Sbjct: 296 VD----RQPLTAPLRCTVKTRYRQQDLACTVTPIDAERIEVRFDEPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEI----CLGGGIIE 362


>gi|301154862|emb|CBW14325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae T3T1]
          Length = 382

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 214/389 (55%), Gaps = 33/389 (8%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L++  L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 12  KLSAEQLAENATK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 67

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 68  TAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFK 127

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGA+ +ATGHY+R R   G D +    + R +D  +DQSYFL+  ++ Q+ 
Sbjct: 128 AFLEYAAEDLGANYIATGHYVRRR---GADNQAE--LLRGLDSNKDQSYFLYTLSKHQVG 182

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI 
Sbjct: 183 QSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIR 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRE 296
            ++G+I+GRH G++ +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR 
Sbjct: 241 TVDGEIIGRHEGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR- 299

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKS 355
            L    +  ++++W+      + V + F+C VK R  Q  +   V+  +DD + V F++ 
Sbjct: 300 -LFSKGLIAKQLHWVN----REPVREAFRCTVKTRYRQTDIACLVEPIDDDCIRVIFDEP 354

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  V  GQ+ VFY  +      LGGGII 
Sbjct: 355 QAAVTPGQSAVFYLDEV----CLGGGIIE 379


>gi|12514787|gb|AAG55959.1|AE005329_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361069|dbj|BAB35028.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209772838|gb|ACI84731.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772840|gb|ACI84732.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772842|gb|ACI84733.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772844|gb|ACI84734.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772846|gb|ACI84735.1| hypothetical protein ECs1605 [Escherichia coli]
          Length = 383

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 212/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|293404489|ref|ZP_06648483.1| trmU [Escherichia coli FVEC1412]
 gi|298380264|ref|ZP_06989869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
 gi|300896838|ref|ZP_07115333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 198-1]
 gi|300938705|ref|ZP_07153429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 21-1]
 gi|301024581|ref|ZP_07188253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 69-1]
 gi|331646392|ref|ZP_08347495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M605]
 gi|281178243|dbj|BAI54573.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli SE15]
 gi|291429075|gb|EFF02100.1| trmU [Escherichia coli FVEC1412]
 gi|298279962|gb|EFI21470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
 gi|300359320|gb|EFJ75190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 198-1]
 gi|300396506|gb|EFJ80044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 69-1]
 gi|300456350|gb|EFK19843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 21-1]
 gi|331045144|gb|EGI17271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M605]
          Length = 383

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 212/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|257870651|ref|ZP_05650304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus gallinarum EG2]
 gi|257804815|gb|EEV33637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus gallinarum EG2]
          Length = 372

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 203/376 (53%), Gaps = 25/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D  +
Sbjct: 4   ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 61  VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+K 
Sbjct: 121 DYVATGHYAQ----VETDENGVTHMLRGVDSNKDQTYFLSQLSQAQLSKTMFPLGGMEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A   GL  A K DS  +CF+ +  +   +   N   A +G++V L+G++ G+H+G
Sbjct: 177 EVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234

Query: 259 IINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           ++ YTIGQR+GLG+  G    EP FVV  D  ++ + VG      +L   R+   +I++ 
Sbjct: 235 LMYYTIGQRQGLGIGGGGTSQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIHFT 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
            D    D   + FKC  K R  Q  V V V+  ++D   V F++    +  GQA VFY  
Sbjct: 295 TD---TDRPSE-FKCTAKFRYRQQDVGVSVRLLDNDRAEVIFDEPVRAITPGQAVVFY-- 348

Query: 371 DSNEARVLGGGIISGS 386
             +    LGGG+I  +
Sbjct: 349 --DGMECLGGGLIDAA 362


>gi|212218582|ref|YP_002305369.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuK_Q154]
 gi|259495827|sp|B6J7H5|MNMA_COXB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|212012844|gb|ACJ20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii CbuK_Q154]
          Length = 371

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 19  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 76  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 135

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 136 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 190

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 191 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 248

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 249 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 306

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 307 DTEPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 362

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 363 ECLGGGIIN 371


>gi|261821429|ref|YP_003259535.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium wasabiae WPP163]
 gi|261605442|gb|ACX87928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium wasabiae WPP163]
          Length = 368

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 33/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       DGK R  + R MD  +DQSYFL+    +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ + + + +G+H G+
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237

Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+      GE P +VV  DK+ +  I+   +  E  R+       ++++
Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVV--DKDVANNILYVAQGHEHPRLMSYGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+        +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ VFY
Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGGII 
Sbjct: 352 LDDV----CLGGGIIE 363


>gi|153208378|ref|ZP_01946716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|120576035|gb|EAX32659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 362

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 67  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 239

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 354 ECLGGGIIN 362


>gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
           MV-1A-US]
 gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
 gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus 214-1]
 gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus CTV-05]
 gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
           MV-1A-US]
 gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
 gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus 214-1]
 gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus CTV-05]
          Length = 375

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 196/387 (50%), Gaps = 27/387 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    S   G C A +D  D ++V D
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L AD +
Sbjct: 65  KIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY ++   V D      +M RP D  +DQ+YFL   +Q+Q+  + FPL ++ K  VR
Sbjct: 125 AMGHYAKT---VKDTNGVTHMM-RPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++ 
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +N      F 
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLNASDMSFFT 296

Query: 318 DAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 F+  C  K R  Q  + V V+ +  D+   V F++    V  GQA V Y  +  
Sbjct: 297 GKPDHDFEMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGE-- 354

Query: 374 EARVLGGGIISGSKRSDAVEESLLSVI 400
               LGGG I  + +    EE  L ++
Sbjct: 355 --ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|251789549|ref|YP_003004270.1| tRNA-specific 2-thiouridylase MnmA [Dickeya zeae Ech1591]
 gi|247538170|gb|ACT06791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya zeae Ech1591]
          Length = 372

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 204/381 (53%), Gaps = 33/381 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 10  KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADAQAVCD 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 67  KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       DGK    + R +D  +DQSYFL+  + QQL    FP+G+++K  V
Sbjct: 127 IATGHYVRRH---DIDGKSH--LLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPQV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+++G H G+
Sbjct: 182 RKIAEQLSLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMGEHQGL 239

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+        +P +VV  DK+ +  ++   +  E  R+       ++++
Sbjct: 240 MYHTLGQRKGLGIGGVKEGGDDPWYVV--DKDVAGNVLYVAQGHEHPRLMSVGLIAQQLH 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  +P  +   D D + V F++    V  GQ+ VFY
Sbjct: 298 WVD----REPLAAPLRCTVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSAVFY 353

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             +      LGGGII    R+
Sbjct: 354 LGEV----CLGGGIIEERLRA 370


>gi|161986546|ref|YP_310111.2| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei Ss046]
 gi|205829110|sp|Q3Z2Y6|MNMA_SHISS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R   G    G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQP--GKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|54294275|ref|YP_126690.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
 gi|81601380|sp|Q5WWV9|MNMA_LEGPL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53754107|emb|CAH15580.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
          Length = 361

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +   +       C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDYCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALTLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +  G  G     + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  GDI    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGDIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+     +  EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
             +E+ +     CF K R  Q      +   D+   YV F   +  +  GQ  VFY  + 
Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNQHYVMFSNPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGII 383
              + LGG  I
Sbjct: 349 ---QCLGGATI 356


>gi|189036221|sp|A9KE87|MNMA_COXBN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 67  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 239

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 354 ECLGGGIIN 362


>gi|294783066|ref|ZP_06748390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479944|gb|EFG27721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 343

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 191/363 (52%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  AD +
Sbjct: 53  RLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         +   + ++     + +DQSY L+    ++L  L FPL    K+ +R
Sbjct: 113 ATGHYTSVEY---SETFSKYLLKSVHSIIKDQSYILYRLAPEKLERLIFPLKPYSKQEIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL++ DK DSQ +CF ++G Y + +K       ++G+ +   G+ILG+H G   
Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKEGKILGQHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + + +F+  +   ++ +++G    L    I L   N+     FE   +
Sbjct: 229 YTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIEL--TNYKFAVKFEK--L 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +      + R S       + +N+D +Y  + +     A GQ  VF+  +     V+GGG
Sbjct: 285 EDLNLLARPRFSSTGFYGKLIKNNDKIYFKYNEENAHNAKGQHVVFFYDNF----VVGGG 340

Query: 382 IIS 384
            I 
Sbjct: 341 EIK 343


>gi|237739846|ref|ZP_04570327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
 gi|229423454|gb|EEO38501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
          Length = 343

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 188/363 (51%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  AD +
Sbjct: 53  RLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         +   + ++     + +DQSY L+    ++L  L FPL    K+ +R
Sbjct: 113 ATGHYTSVEY---SETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL++ DK DSQ +CF ++G Y + +K       ++G  +   G ILG H G   
Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGKYIDKEGNILGEHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + + +F+  +   ++ +++G    L    I L  IN+     FE   +
Sbjct: 229 YTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIEL--INYKFAVEFEK--I 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                  + R S       + +N+D +Y  + +     A GQ  VF+  +     V+GGG
Sbjct: 285 KDLNLLARPRFSSTGFYGKLIKNNDKIYFKYNEENAHNAKGQHVVFFYDNF----VVGGG 340

Query: 382 IIS 384
            I 
Sbjct: 341 EIK 343


>gi|317507343|ref|ZP_07965081.1| tRNA methyl transferase [Segniliparus rugosus ATCC BAA-974]
 gi|316254361|gb|EFV13693.1| tRNA methyl transferase [Segniliparus rugosus ATCC BAA-974]
          Length = 354

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 167/306 (54%), Gaps = 27/306 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDA 76
           MRV+ AMSGGVDS+V AA     G+DV+GV L L     N+R  S+    CC+ +D  DA
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSRNPDNTRGGSR---GCCSVEDSRDA 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D + +  YV+D+ E F   VI  F ++YA G TP PCV CN  +KF+ LL     L
Sbjct: 58  RRSADVLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVAL 117

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R       DG     + R  D ++DQSY L   T +QL    FP+GD  
Sbjct: 118 GFDKVATGHYARL------DGT---TLRRSADPDKDQSYVLAVLTAEQLARAMFPVGDTP 168

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVK---RINAGIALEGDIV-HLNG 250
           K  +R+ A   GL +A K DS DICF+  G  K F   K   R  AG +  G+   H  G
Sbjct: 169 KPQIREEADRRGLAVAQKPDSHDICFIPSGDTKAFLGAKLAVRSGAG-SRPGEFRDHRTG 227

Query: 251 QILGRHNGIINYTIGQRRG--LGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++LG H+G + +T+GQRRG  LG   G+  P +V  ++  +  V VG  E L V  +  R
Sbjct: 228 EVLGHHDGAVGFTVGQRRGLRLGNPTGDGIPRYVTAVEPETGVVRVGTLEDLRVRSLVAR 287

Query: 307 EINWLG 312
           +  W G
Sbjct: 288 KAVWGG 293


>gi|209364013|ref|YP_001424605.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii Dugway
           5J108-111]
 gi|207081946|gb|ABS77207.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 371

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 19  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 76  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 135

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 136 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 190

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 191 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 248

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 249 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 306

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 307 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 362

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 363 ECLGGGIIN 371


>gi|62127388|gb|AAX65091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 383

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           MV   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MVEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++
Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  +   +DD +
Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|187922695|ref|YP_001894337.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phytofirmans PsJN]
 gi|229486336|sp|B2SX74|MNMA_BURPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187713889|gb|ACD15113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia phytofirmans PsJN]
          Length = 383

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 184/373 (49%), Gaps = 27/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    ++   R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRQ---NERNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 179 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIGLAF 236

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W+  
Sbjct: 237 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHAWLLSHTLSAGNTSWVAG 296

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVY-VDFEKSEVGVASGQACVFYTS 370
               +   DGF C  K R  Q   P       + +G++ ++F+ ++  V  GQ+ V Y  
Sbjct: 297 ----EPPADGFACGAKTRYRQADAPCTFSSAGSGEGLFELNFDAAQWAVTPGQSAVLYDG 352

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 353 DV----CLGGGII 361


>gi|88860122|ref|ZP_01134761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas tunicata D2]
 gi|88818116|gb|EAR27932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas tunicata D2]
          Length = 366

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 200/376 (53%), Gaps = 32/376 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +++V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 6   NIKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           C+ + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + L A
Sbjct: 63  CEKLGIPLHTVNFASEYWDNVFQYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAAEALNA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R  L  GD    + +M R  D  +DQSYFL+  + + L    FP+G+++K 
Sbjct: 123 DFIATGHYVRRELR-GD----KYVMIRGDDDNKDQSYFLYTLSHEHLAQTLFPVGEIEKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G ++G H G
Sbjct: 178 EVRRIAEEQNLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGKIEDTDGNVVGDHEG 235

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREI 308
           ++ +T+GQR+GL +       GEP +VV  D   + ++VG     PR  L  + +   ++
Sbjct: 236 LMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLIRNVLVVGQGKDHPR--LYSNGLMANQL 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           +W+ D +     +   +C VK R  Q  +P  +   DDG   V F++ E  V  GQ+ VF
Sbjct: 294 HWV-DRVGPKTTL---RCTVKTRYRQTDLPCTLLVGDDGYARVLFDQPEKAVTPGQSAVF 349

Query: 368 YTSDSNEARVLGGGII 383
           Y ++      LGGGII
Sbjct: 350 YLNEV----CLGGGII 361


>gi|81628239|sp|Q820W2|MNMA_COXBU RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 67  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETSEGKIIGKHDGIMFY 239

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 354 ECLGGGIIN 362


>gi|212212452|ref|YP_002303388.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuG_Q212]
 gi|215919120|ref|NP_820145.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 493]
 gi|259495828|sp|B6IZW5|MNMA_COXB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|206584005|gb|AAO90659.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 493]
 gi|212010862|gb|ACJ18243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii CbuG_Q212]
          Length = 371

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 19  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 76  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 135

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 136 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 190

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 191 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETSEGKIIGKHDGIMFY 248

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 249 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 306

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 307 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 362

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 363 ECLGGGIIN 371


>gi|161830166|ref|YP_001597021.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 331]
 gi|189040503|sp|A9NDN1|MNMA_COXBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161762033|gb|ABX77675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 331]
          Length = 362

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+ DA+ + D 
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   ++LGA  LA
Sbjct: 67  IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY      + ++    R++ +  D  +DQSYFL    Q QL +  FP+G  +K  VR 
Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+G+H+GI+ Y
Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAKPGNIETSEGKIIGKHDGIMFY 239

Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           T+GQR+GL +      GE P +VV  DK+  R ++   +  E   +Y +E+         
Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297

Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D        C  K R  Q D   V  + ++D  +V FE  +  +  GQ+ VFY  +    
Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353

Query: 376 RVLGGGIIS 384
             LGGGII+
Sbjct: 354 ECLGGGIIN 362


>gi|85712895|ref|ZP_01043936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina baltica OS145]
 gi|85693275|gb|EAQ31232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina baltica OS145]
          Length = 376

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 203/381 (53%), Gaps = 32/381 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KNP + +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ D
Sbjct: 6   KNPSETKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDDDE---YCAAADDLAD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  VC+ + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    +
Sbjct: 63  AEAVCEKLGIELHTVNFAAEYWDNVFEHFLDEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 122

Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY+R      +DGK +  + R +D  +DQSYFL+  + + +    FP+G+
Sbjct: 123 ALGADYIATGHYVRRAF---NDGKWQ--LLRGLDNNKDQSYFLYTLSHEHVAQTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL  ADK DS  ICF+ + K+ D +++     A  G I  ++G+ LG
Sbjct: 178 LEKPEVRRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AQPGKIESVDGEELG 235

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR--- 306
            H G++ +TIGQR+GL +     A  +P +VV  DK+  R ++   +     R++ +   
Sbjct: 236 DHEGLMYHTIGQRKGLHIGGLADAGDDPWYVV--DKDVERNVLVVAQGKNHPRLFSKGLI 293

Query: 307 --EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
             +++W+      + + +  +C VK R  Q  +   +    DG + V F++    V  GQ
Sbjct: 294 ANQLHWVN----REEITEPLRCVVKTRYRQADIACQITPAADGRITVSFDEPVAAVTPGQ 349

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  D      LGGGII 
Sbjct: 350 SAVFYIDDV----CLGGGIIE 366


>gi|330503284|ref|YP_004380153.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01]
 gi|328917570|gb|AEB58401.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01]
          Length = 362

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 26/373 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V MSGGVDSSV A LL   GY V G+ ++ ++    ++    C A  D+ DA+ VCD 
Sbjct: 1   MIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLADAQAVCDR 57

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD++A
Sbjct: 58  IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIA 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R R     D   R  + + +D  +DQSYFL A    Q+    FP+G+++K  VR 
Sbjct: 118 TGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGVQIAKTLFPVGELEKPQVRA 172

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A +  L  A K DS  ICF+ + ++ D +K+     A  GDI    GQ++GRH+G++ +
Sbjct: 173 IAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGRHHGLMYH 230

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
           TIGQR+GLG+     A  +P +V+  D   + +IVG       L    +   EI W+   
Sbjct: 231 TIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNAHPWLFSRALLASEIYWVNPV 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                     +   K+R  Q      +++ + G    F++ +  V  GQ+ VFY  +   
Sbjct: 291 DLSSPR----RLTAKVRYRQSDQLCTLEKTETGYRAVFDEPQRAVTPGQSVVFYDGEV-- 344

Query: 375 ARVLGGGIISGSK 387
              LGGG+I  ++
Sbjct: 345 --CLGGGVIETAE 355


>gi|326794627|ref|YP_004312447.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
 gi|326545391|gb|ADZ90611.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
          Length = 371

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 203/384 (52%), Gaps = 27/384 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NS + + N K   V+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C 
Sbjct: 1   MNSSEQNSNTK---VIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CT 54

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A +D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF  
Sbjct: 55  AKEDLADAQAVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKA 114

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L     L AD +ATGHY+R     G D     ++ + +D  +DQSYFL+A  + ++   
Sbjct: 115 FLEYAMALKADYIATGHYVRK----GFDENGNALLLKGLDNNKDQSYFLYAVGKGEIAKT 170

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G+++K  VR LA E  L   +K DS  ICF+ + ++ D +++     A  GDI  L
Sbjct: 171 FFPVGELEKPEVRRLAEEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETL 228

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVH 301
            G  +GRH+G++ +TIGQR+GLG+        EP +VV   L++N  +V  G +    ++
Sbjct: 229 EGDKIGRHHGLMYHTIGQRQGLGIGGLSKYPDEPWYVVAKDLERNVLQVTQGGQHP-SLY 287

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
           + +L   N+  D +  +       C  K R  Q      +    DG + V F + +  + 
Sbjct: 288 KTHLIADNF--DWVAREKPSLPLTCKAKCRYRQPDQDCTISELKDGRIEVSFSEPQRAIT 345

Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384
            GQ+ VFY  ++     LGGGII+
Sbjct: 346 PGQSVVFYLDEN----CLGGGIIN 365


>gi|307299195|ref|ZP_07578996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914991|gb|EFN45377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 357

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 192/354 (54%), Gaps = 24/354 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +M++ +A+SGGVDS+V AA L R G DVIG  + +         +G+  A     DA+ V
Sbjct: 6   EMKIGIALSGGVDSAVAAARLIRQGNDVIGYHMIVL--------EGNPLANAAADDAKAV 57

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +   + D  E FR  ++  F +SY +GETP PCV CN ++KF  LL      G +
Sbjct: 58  ADHLGIELKIVDLREEFRR-ILNYFTTSYMSGETPNPCVVCNDSIKFGLLLERMFSFGEE 116

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY  +RL   D+      + R +D  +DQSYFL    + +L D+ FPLG+M KE 
Sbjct: 117 KIATGHY--ARLVSLDENV---FLARALDRAKDQSYFLSRIGKHKLHDILFPLGEMTKEE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNG 258
           VR  A  + L +  K DSQ+ICF+  G Y   +K  + GI    G I   +G +LGRH G
Sbjct: 172 VRQEASGIDLPVHSKKDSQEICFIPDGDYRSFLK--SRGIEGNPGPITDESGILLGRHTG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YTIGQR+G+G +  +  +V  LD  ++++I+  R+SL    +  ++ NW  D   E 
Sbjct: 230 LSGYTIGQRKGIGFSGRDRYYVKRLDLKNNKLILAQRQSLMSEALVAKDPNWYIDPGEE- 288

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                F C  KIRSS  PV   V   + + + VDF++    V  GQ  VFY  D
Sbjct: 289 -----FDCLCKIRSSMKPVSAKVTIVSGEKIRVDFQEKVWAVTPGQLAVFYIDD 337


>gi|89107979|ref|AP_001759.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111218|ref|NP_415651.4| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157156703|ref|YP_001462402.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli E24377A]
 gi|157160657|ref|YP_001457975.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli HS]
 gi|170020474|ref|YP_001725428.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ATCC 8739]
 gi|170080784|ref|YP_001730104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|191168327|ref|ZP_03030119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B7A]
 gi|193066260|ref|ZP_03047312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E22]
 gi|193071716|ref|ZP_03052616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E110019]
 gi|194436948|ref|ZP_03069047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 101-1]
 gi|209918390|ref|YP_002292474.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SE11]
 gi|218553711|ref|YP_002386624.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI1]
 gi|218694667|ref|YP_002402334.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 55989]
 gi|238900387|ref|YP_002926183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BW2952]
 gi|253773843|ref|YP_003036674.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161240|ref|YP_003044348.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli B str. REL606]
 gi|256018611|ref|ZP_05432476.1| tRNA-specific 2-thiouridylase MnmA [Shigella sp. D9]
 gi|256023169|ref|ZP_05437034.1| tRNA-specific 2-thiouridylase MnmA [Escherichia sp. 4_1_40B]
 gi|260843449|ref|YP_003221227.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260854815|ref|YP_003228706.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260867562|ref|YP_003233964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|293433421|ref|ZP_06661849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B088]
 gi|297518453|ref|ZP_06936839.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli OP50]
 gi|301029558|ref|ZP_07192636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 196-1]
 gi|307137768|ref|ZP_07497124.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli H736]
 gi|307310090|ref|ZP_07589740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|331667534|ref|ZP_08368398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA271]
 gi|8039808|sp|P25745|MNMA_ECOLI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816868|sp|A7ZZ88|MNMA_ECOHS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816869|sp|B1XA43|MNMA_ECODH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816870|sp|A7ZKS3|MNMA_ECO24 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816881|sp|B1IUD4|MNMA_ECOLC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4062697|dbj|BAA35955.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli str. K12 substr. W3110]
 gi|87081837|gb|AAC74217.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157066337|gb|ABV05592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli HS]
 gi|157078733|gb|ABV18441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E24377A]
 gi|169755402|gb|ACA78101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ATCC 8739]
 gi|169888619|gb|ACB02326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|190901622|gb|EDV61379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B7A]
 gi|192926109|gb|EDV80751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E22]
 gi|192954978|gb|EDV85481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E110019]
 gi|194423931|gb|EDX39919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 101-1]
 gi|209911649|dbj|BAG76723.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli SE11]
 gi|218351399|emb|CAU97105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 55989]
 gi|218360479|emb|CAQ98033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IAI1]
 gi|238863704|gb|ACR65702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BW2952]
 gi|242376935|emb|CAQ31656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253324887|gb|ACT29489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973141|gb|ACT38812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B str. REL606]
 gi|253977355|gb|ACT43025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|257753464|dbj|BAI24966.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257758596|dbj|BAI30093.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|257763918|dbj|BAI35413.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|260449728|gb|ACX40150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli DH1]
 gi|291324240|gb|EFE63662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B088]
 gi|299877553|gb|EFI85764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 196-1]
 gi|306909808|gb|EFN40302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|309701457|emb|CBJ00761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ETEC H10407]
 gi|315060410|gb|ADT74737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|315616009|gb|EFU96635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 3431]
 gi|320175639|gb|EFW50731.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella dysenteriae CDC 74-1112]
 gi|320184390|gb|EFW59201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella flexneri CDC 796-83]
 gi|320201029|gb|EFW75613.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli EC4100B]
 gi|323153179|gb|EFZ39443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli EPECa14]
 gi|323179331|gb|EFZ64901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1180]
 gi|323185683|gb|EFZ71044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1357]
 gi|323379030|gb|ADX51298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli KO11]
 gi|323937873|gb|EGB34137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E1520]
 gi|323942603|gb|EGB38770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E482]
 gi|323962732|gb|EGB58310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H489]
 gi|323973277|gb|EGB68466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA007]
 gi|324117296|gb|EGC11203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E1167]
 gi|331065119|gb|EGI37014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA271]
          Length = 368

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|312881247|ref|ZP_07741045.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371139|gb|EFP98593.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 369

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 32/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEDYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLDFADDVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      D   ++  M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYVRRSCIESD---QKPQMLRGLDGNKDQSYFLYTLSHEQIGRSLFPVGELEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + +     A  G I    G+ +G H G++
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSKYLP--AQPGKIETPEGKEIGEHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308
            +T+GQR+GL +          EP +V   DK+  R ++          L+   +   ++
Sbjct: 240 YHTLGQRKGLHIGGQKGGGGNEEPWYVA--DKDLKRNVLIAVQGADHPLLKSEGLIASQL 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           +W+        +V   KC VK R  Q+ +P  +   D+G + V F+  +V V  GQ+ VF
Sbjct: 298 HWVD----RSPLVSEIKCSVKTRYRQNDIPCTIVPIDNGSIKVIFDNPQVAVTPGQSAVF 353

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  D      LGGGII 
Sbjct: 354 YQGDV----CLGGGIIE 366


>gi|304397251|ref|ZP_07379130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. aB]
 gi|304355400|gb|EFM19768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. aB]
          Length = 370

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 198/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       DG+ +  + R +D  +DQSYFL+  + QQ+    FP+G+++K  V
Sbjct: 125 IATGHYVRRHDV---DGQSQ--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G+I    GQI+G H G++
Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   +R+IV   G    L    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q  +P   +   DD + V F++    V  GQ+ VFY  D
Sbjct: 298 ----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 V----CLGGGIIE 362


>gi|296435803|gb|ADH17977.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9768]
 gi|296437663|gb|ADH19824.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11074]
 gi|297140162|gb|ADH96920.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9301]
          Length = 358

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPNEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|110805161|ref|YP_688681.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5 str. 8401]
 gi|161485922|ref|NP_707062.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 301]
 gi|161486505|ref|NP_836851.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str.
           2457T]
 gi|123342960|sp|Q0T5N9|MNMA_SHIF8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828969|sp|Q83LF7|MNMA_SHIFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110614709|gb|ABF03376.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313650389|gb|EFS14796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri 2a str. 2457T]
          Length = 368

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIKVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|114793688|pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Initial Trna Binding State
 gi|114793689|pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Initial Trna Binding State
 gi|114793692|pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Pre-Reaction State
 gi|114793694|pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Adenylated Intermediate State
 gi|114793695|pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Adenylated Intermediate State
          Length = 380

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 19  KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 76  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 135

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 136 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 190

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 191 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 248

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 249 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 308

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 309 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 361

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 362 -NGEVCLGGGIIE 373


>gi|161950103|ref|YP_403605.2| tRNA-specific 2-thiouridylase MnmA [Shigella dysenteriae Sd197]
 gi|309788203|ref|ZP_07682809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1617]
 gi|205821961|sp|Q32EZ1|MNMA_SHIDS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|308924055|gb|EFP69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1617]
          Length = 368

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAKSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  I L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSIGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|15643286|ref|NP_228330.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga maritima MSB8]
 gi|8134745|sp|Q9WYZ0|MNMA_THEMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4981033|gb|AAD35605.1|AE001728_6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga maritima MSB8]
          Length = 358

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 186/369 (50%), Gaps = 20/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        K++     CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIKKEIKKKVCCSPSDTADAM 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   + V   + D +E FR  VI PF      G TP PC  CNR VKF  L+      G
Sbjct: 61  RIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R       +   R+++ + +DL++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARIEF---SEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
           E +R +A E G+ +A K +SQD+CF+  G   + +K  + GI L +GDI+   G+++GRH
Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLKDGDIITPEGEVVGRH 235

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G   YTIGQR+G  +   G   +V       + V+V   E +    +   +  W  +  
Sbjct: 236 FGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE-- 293

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               V + F+C  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+   
Sbjct: 294 ----VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVSFEKKVFAVTPGQIAAFYDGDT--- 346

Query: 376 RVLGGGIIS 384
            +LGG II 
Sbjct: 347 -LLGGAIIK 354


>gi|311111740|ref|YP_003982962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia dentocariosa ATCC 17931]
 gi|310943234|gb|ADP39528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia dentocariosa ATCC 17931]
          Length = 403

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 191/396 (48%), Gaps = 44/396 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + +  +V+D+ ERF+  V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCAQLGIPFFVWDFSERFKEDVVDDFIAEYEAGRTPNPCMRCNEKIKFAALLERAVSLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  +R+   DDG R   + R  D  +DQSY L   T +QL    FPL     K
Sbjct: 120 DAVVTGHY--ARVITNDDGNRE--LHRAADWAKDQSYVLGVLTHEQLKHAWFPLATTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
             VR  A   G  +A K DS DICF+ +G   D    +   I +  G I   +G ++G H
Sbjct: 176 AEVRAEAERRGFSVAKKPDSYDICFIPEG---DTRAWLGEHIQMRPGMIKDTSGNVVGEH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQR+GL +      G+P FV+ +   ++ VIVG RE L +  I      W G
Sbjct: 233 PGAQGFTVGQRKGLALGTPAPDGKPRFVLEIRPKTNEVIVGSRELLSIDEIRGIRATWAG 292

Query: 313 DGLFEDAVV-----------DGFKCFVKIRSSQDPV--PVFVQRNDDG-----------V 348
             + E               + F    ++R+  DPV     ++  +D             
Sbjct: 293 IPVPEAEHFLAQEPKLGVRSETFDVTAQVRAHADPVRGTAHLEWAEDTDAETPGKLRVET 352

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V       GVA GQ  V Y       RVLG   I+
Sbjct: 353 VVRLHDGLFGVAPGQTMVLYQG----TRVLGQSTIA 384


>gi|160903153|ref|YP_001568734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Petrotoga mobilis SJ95]
 gi|205816886|sp|A9BIS3|MNMA_PETMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160360797|gb|ABX32411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Petrotoga mobilis SJ95]
          Length = 367

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 193/371 (52%), Gaps = 19/371 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYDA 76
           + +V++ MSGGVDSSV A LLK   Y VIG+  +  +    S   ++K  CC+  D  DA
Sbjct: 3   NKKVLMLMSGGVDSSVAAYLLKEQNYHVIGLHFKTVSDVVFSLIPEKKKVCCSPSDTQDA 62

Query: 77  RRVCDTINVSHY-VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            ++ D +++  + + D ++ F+  +I  F  +Y  G+TP PC+ CNR  KF   L +   
Sbjct: 63  LKIADKLDLDDFQIVDIKKEFKEKIIDYFIKTYKEGKTPNPCMLCNRFFKFGKALEIAHS 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD +++GHY+        +     I+ + +D  +DQSYFL    +  L  L FPLG+M
Sbjct: 123 YGADWVSSGHYLIKEY---SNKYSTYIIKKGVDQYKDQSYFLSYIDKNTLPKLHFPLGNM 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  +RD+A ++GL +A+K DSQ++CF+    Y   +K  N     EG +  L G  +G 
Sbjct: 180 YKVEIRDIANKIGLSVANKPDSQELCFIPDNDYRRFLKE-NGVTTEEGKVYDLEGNEIGT 238

Query: 256 HNGIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           H G +NYTIGQR G+         L V  +    + +IV P E +    + ++ +N+  D
Sbjct: 239 HTGYMNYTIGQRSGISYYKNANVKLHVYKIFPQKNVLIVAPTEEMYSKELIVQNVNFFVD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             F++  ++GF C V+ +S + P  V  +  D  + V F++    V  GQ    Y     
Sbjct: 299 --FKE--IEGF-CRVRKKSEEKPA-VVKKIADHTLKVSFKEPIFAVTPGQFATIY---DE 349

Query: 374 EARVLGGGIIS 384
              VL  G+I+
Sbjct: 350 SGVVLASGVIN 360


>gi|293409499|ref|ZP_06653075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B354]
 gi|291469967|gb|EFF12451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B354]
          Length = 395

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 208/389 (53%), Gaps = 28/389 (7%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +   
Sbjct: 18  ALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY-- 75

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +K
Sbjct: 76  -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIK 134

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F   L    + LGAD +ATGHY+R       DGK R  + R +D  +DQSYFL+  + +Q
Sbjct: 135 FKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDSNKDQSYFLYTLSHEQ 189

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G 
Sbjct: 190 IAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGK 247

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESL 298
           I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++    E  
Sbjct: 248 IITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHP 307

Query: 299 EVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKS 355
            +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  +DD + V F++ 
Sbjct: 308 RLMSVGLIAQQLHWVDREPFTSTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEP 363

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384
              V  GQ+ VFY    N    LGGGII 
Sbjct: 364 VAAVTPGQSAVFY----NGEVCLGGGIIE 388


>gi|157146082|ref|YP_001453401.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter koseri ATCC
           BAA-895]
 gi|157083287|gb|ABV12965.1| hypothetical protein CKO_01838 [Citrobacter koseri ATCC BAA-895]
          Length = 383

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 215/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           M+   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MIEYAALKFNVVSIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G  +G+H G++ +T+GQR+GLG+        +P +VV  D +N+  V+
Sbjct: 231 --AQPGKIITVDGDEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  DD  +
Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFSGTL----RCTVKTRYRQTDIPCTVKALDDERI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|148358920|ref|YP_001250127.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila str. Corby]
 gi|296106968|ref|YP_003618668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|205816878|sp|A5IBN1|MNMA_LEGPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148280693|gb|ABQ54781.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila str. Corby]
 gi|295648869|gb|ADG24716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 361

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 191/371 (51%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +   +       C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDYCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +  G  G     + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  G+I    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+     +  EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
             +E+ +     CF K R  Q      +   D+ + YV F   +  +  GQ  VFY  + 
Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNLHYVMFSSPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGII 383
              + LGG  I
Sbjct: 349 ---QCLGGATI 356


>gi|161984923|ref|YP_408327.2| tRNA-specific 2-thiouridylase MnmA [Shigella boydii Sb227]
 gi|205821943|sp|Q31ZK9|MNMA_SHIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|332094391|gb|EGI99440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii 3594-74]
          Length = 368

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCSVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|308186449|ref|YP_003930580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Pantoea vagans C9-1]
 gi|308056959|gb|ADO09131.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Pantoea vagans C9-1]
          Length = 370

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DG+ +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRKDV---DGQSQ--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G+I    GQI+G H G++
Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   +R+IV   G    L    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q  +P   + + DD + V F++    V  GQ+ VFY  D
Sbjct: 298 ----RQPITAPLRCTVKTRYRQTDIPCEIIPQGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 V----CLGGGIIE 362


>gi|170682526|ref|YP_001744044.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SMS-3-5]
 gi|218549144|ref|YP_002382935.1| tRNA-specific 2-thiouridylase MnmA [Escherichia fergusonii ATCC
           35469]
 gi|205816880|sp|B1LI10|MNMA_ECOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170520244|gb|ACB18422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218356685|emb|CAQ89312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia fergusonii ATCC 35469]
 gi|323967072|gb|EGB62498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M863]
 gi|323976496|gb|EGB71584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TW10509]
 gi|324113924|gb|EGC07898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia fergusonii B253]
 gi|325497565|gb|EGC95424.1| orf, hypothetical protein [Escherichia fergusonii ECD227]
 gi|327253837|gb|EGE65466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli STEC_7v]
          Length = 368

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|218700344|ref|YP_002407973.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI39]
 gi|218704607|ref|YP_002412126.1| tRNA -specific 2-thiouridylase MnmA [Escherichia coli UMN026]
 gi|218370330|emb|CAR18133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IAI39]
 gi|218431704|emb|CAR12586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli UMN026]
 gi|284920959|emb|CBG34022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 042]
 gi|330910947|gb|EGH39457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli AA86]
          Length = 368

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|326623649|gb|EGE29994.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628111|gb|EGE34454.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 383

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           MV   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MVEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++
Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  +   +DD +
Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|91210289|ref|YP_540275.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UTI89]
 gi|117623318|ref|YP_852231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli APEC O1]
 gi|237706881|ref|ZP_04537362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|300982382|ref|ZP_07176080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 200-1]
 gi|91071863|gb|ABE06744.1| probable ATPase YcfB [Escherichia coli UTI89]
 gi|115512442|gb|ABJ00517.1| putative ATPase [Escherichia coli APEC O1]
 gi|226898091|gb|EEH84350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|300307219|gb|EFJ61739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 200-1]
 gi|315287470|gb|EFU46881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 110-3]
 gi|315296602|gb|EFU55897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 16-3]
 gi|324013226|gb|EGB82445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 60-1]
          Length = 383

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 211/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|38703944|ref|NP_309632.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367616|ref|NP_287347.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7
           EDL933]
 gi|168749736|ref|ZP_02774758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756472|ref|ZP_02781479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168762550|ref|ZP_02787557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771001|ref|ZP_02796008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776054|ref|ZP_02801061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168782470|ref|ZP_02807477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168787608|ref|ZP_02812615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|168800455|ref|ZP_02825462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|195938765|ref|ZP_03084147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808537|ref|ZP_03250874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814775|ref|ZP_03255954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208822542|ref|ZP_03262861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209397379|ref|YP_002270050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217328487|ref|ZP_03444569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254792593|ref|YP_003077430.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227234|ref|ZP_05941515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258759|ref|ZP_05951292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282168|ref|YP_003498986.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Escherichia coli O55:H7 str. CB9615]
 gi|24638314|sp|Q8X735|MNMA_ECO57 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187768490|gb|EDU32334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016000|gb|EDU54122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000055|gb|EDU69041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356337|gb|EDU74756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189360141|gb|EDU78560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189367117|gb|EDU85533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189372405|gb|EDU90821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|189377259|gb|EDU95675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728338|gb|EDZ77939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731423|gb|EDZ80111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208738027|gb|EDZ85710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209158779|gb|ACI36212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217318914|gb|EEC27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254591993|gb|ACT71354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290762041|gb|ADD56002.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Escherichia coli O55:H7 str. CB9615]
 gi|320187860|gb|EFW62530.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320637601|gb|EFX07401.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           G5101]
 gi|320643161|gb|EFX12362.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str.
           493-89]
 gi|320648098|gb|EFX16774.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H
           2687]
 gi|320653931|gb|EFX22005.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659411|gb|EFX26980.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664548|gb|EFX31699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339412|gb|EGD63224.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           1044]
 gi|326341465|gb|EGD65256.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli O157:H7 str. 1125]
          Length = 368

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|324005950|gb|EGB75169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 57-2]
          Length = 383

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 212/396 (53%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG- 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 ----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV 348
               PR  + V  I L +++W+    F   +    +C VK R  Q  +P  V+  D D +
Sbjct: 291 GHEHPR-LMSVGLIAL-QLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|291617068|ref|YP_003519810.1| TrmU [Pantoea ananatis LMG 20103]
 gi|291152098|gb|ADD76682.1| TrmU [Pantoea ananatis LMG 20103]
          Length = 376

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 199/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 14  KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 71  KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 130

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     D   R  + R  D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 131 IATGHYVRRQ-----DSDGRSHLLRGRDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ + + R     A  G+I  ++GQ++G H G++
Sbjct: 186 RRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   +R+IV   G    L    +  ++++W+ 
Sbjct: 244 YHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q  +P   + + DD + V F++    V  GQ+ VFY  D
Sbjct: 304 ----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYLGD 359

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 360 V----CLGGGIIE 368


>gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC
           4571]
 gi|205816860|sp|A8YUQ2|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571]
          Length = 375

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 189/378 (50%), Gaps = 25/378 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    S   G C A +D  D ++V D
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD +
Sbjct: 65  KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ K  VR
Sbjct: 125 AMGHYAKTV----KDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++ 
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316
           YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F 
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYASRLKASDMSFFT 296

Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSDS 372
              D  V+ F C  K R  Q  V V V+ + D    D  F++    V  GQA V Y  + 
Sbjct: 297 GKPDHDVE-FHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGE- 354

Query: 373 NEARVLGGGIISGSKRSD 390
                LGGG I  + + D
Sbjct: 355 ---ECLGGGNIDAAYQED 369


>gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
           HTA426]
 gi|81347762|sp|Q5L186|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 370

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 25/380 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R     G     +  + R  D  +DQ+YFL   T + L  + FP+G++ K+
Sbjct: 119 DYIATGHYARINRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  + + +K  N   A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLK--NYLPAQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G  +V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 LG  II    + DA
Sbjct: 348 V----CLGSAIIDEVIKMDA 363


>gi|237741407|ref|ZP_04571888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|229430939|gb|EEO41151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
          Length = 343

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 195/365 (53%), Gaps = 28/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y  G TP PC+ C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY     S+++       + ++     + +DQSY L+  +  +L  L FPL D  K+
Sbjct: 113 ATGHYTSVEYSKIF------SKYLLKSVHSIIKDQSYMLYRLSSNKLERLIFPLKDYSKQ 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A ++GL+I +K DSQ +CF ++G Y + +K       ++G+ +  +G ILG+H G
Sbjct: 167 EIREIALKIGLEIHNKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEG 225

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L  IN      +E 
Sbjct: 226 YQLYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVEL--INSKFSVEYEK 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             ++  +   + R S       + ++ + +Y  + +     A GQ  VF+     +  V+
Sbjct: 284 --LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVV 337

Query: 379 GGGII 383
           GGG I
Sbjct: 338 GGGEI 342


>gi|300723601|ref|YP_003712906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630123|emb|CBJ90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 367

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 202/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAADDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G+++K  V
Sbjct: 125 IATGHYVRRR-----DADGISQLLRGLDGNKDQSYFLYTLSHQQIAKSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV  +GQ +G+H+G++
Sbjct: 180 RRIAEEIGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTEDGQTIGQHSGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        +P +VV  + +N++ ++    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGTKDGSEDPWYVVDKELENNTLIVAQGHEHPRLMSVGLIAQQLHWVN 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +  +    +C VK R  Q  +P   +  ++D + V F+     V  GQ+ VFY  +
Sbjct: 298 RQSLKTEI----RCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTPGQSAVFYQDE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGG+I 
Sbjct: 354 I----CLGGGVIE 362


>gi|254390807|ref|ZP_05006019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197704506|gb|EDY50318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 367

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/351 (39%), Positives = 187/351 (53%), Gaps = 25/351 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYD 75
           P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G+  CC  +D  D
Sbjct: 18  PRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRD 76

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     
Sbjct: 77  ARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALA 136

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194
           LG D + TGHY  + +    DG R   + R  D+ +DQSY L    ++QL    FPLGD 
Sbjct: 137 LGFDAVCTGHY--ATVVTLPDGGRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDT 192

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQI 252
              K+ +R  A   GL +A K DS DICF+  G     +  R+      EGDIV  +G  
Sbjct: 193 LTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDESGTR 249

Query: 253 LGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           LG H G   +TIGQR+GL +    A G+P +V+ +    +RV VGP E+L+V  +     
Sbjct: 250 LGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRP 309

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVY-VDFEKS 355
            W G      A  D +   ++    + PV   PV  +R D GV+   FE++
Sbjct: 310 RWCGTA---PAGADAYTAQLRAHGGETPVMGEPV-RRRADTGVHDYQFERT 356


>gi|300690463|ref|YP_003751458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum PSI07]
 gi|299077523|emb|CBJ50149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum PSI07]
          Length = 370

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 188/375 (50%), Gaps = 27/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QLC   FPLG++ K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLCRTLFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I   + + +G+H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDDKTIGQHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                   +G +   K R  Q   P  V R   G + + F +++  V  GQ+ V Y  D 
Sbjct: 295 ----HPPAEGTQLAAKTRYRQTDAPCAVTRAAGGALTLTFPQAQWAVTPGQSAVLYDGDV 350

Query: 373 NEARVLGGGIISGSK 387
                LGGGII+ ++
Sbjct: 351 ----CLGGGIIASTE 361


>gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus helveticus DSM 20075]
 gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus helveticus DSM 20075]
 gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
           5463]
          Length = 375

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 189/378 (50%), Gaps = 25/378 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    S   G C A +D  D ++V D
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD +
Sbjct: 65  KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ K  VR
Sbjct: 125 AMGHYAKTV----KDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++ 
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316
           YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F 
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYASRLKASDMSFFT 296

Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSDS 372
              D  V+ F C  K R  Q  V V V+ + D    D  F++    V  GQA V Y  + 
Sbjct: 297 GKPDHDVE-FHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGE- 354

Query: 373 NEARVLGGGIISGSKRSD 390
                LGGG I  + + D
Sbjct: 355 ---ECLGGGNIDAAYQED 369


>gi|15605008|ref|NP_219792.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|237804632|ref|YP_002888786.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255317389|ref|ZP_05358635.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276s]
 gi|6647880|sp|O84289|MNMA_CHLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3328701|gb|AAC67880.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|231272932|emb|CAX09843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436728|gb|ADH18898.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11222]
 gi|297748416|gb|ADI50962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis D-EC]
 gi|297749296|gb|ADI51974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis D-LC]
          Length = 358

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|89094503|ref|ZP_01167442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanospirillum sp. MED92]
 gi|89081239|gb|EAR60472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanospirillum sp. MED92]
          Length = 371

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 41/384 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    +LGAD +
Sbjct: 70  KLGIHLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYAVELGADFI 129

Query: 142 ATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY+R     GD DGK R  + + +D  +DQSYFL    Q ++    FP+G+++K +V
Sbjct: 130 ATGHYVRR----GDRDGKTR--LLKGLDNNKDQSYFLHQVGQLEIEKTLFPVGELEKPAV 183

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA E  L   +K DS  ICF+ + ++ D +K+     A  G I   NG ++G H G++
Sbjct: 184 RKLAEEHDLVTHNKKDSTGICFIGERRFSDFLKQYLP--AQPGKIETPNGDVIGEHAGLM 241

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWL-G 312
            YTIGQR+GL +        EP FV    LD+N    + G +  L          +WL  
Sbjct: 242 YYTIGQRQGLQIGGLKDYPEEPWFVGAKDLDRNVLIAVQGKQNDLLF-------TDWLTA 294

Query: 313 DGLFEDAVVDG------FKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQAC 365
           D LF    ++G      ++C  K+R  Q      ++R+ + G  + F + +  +  GQ+ 
Sbjct: 295 DELF---WINGEEPQLPYQCTAKVRYRQSDQGCIIERHGESGYRIVFNEPQRAITPGQSV 351

Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389
           V Y  D      LGGG+I  + ++
Sbjct: 352 VIYQDDI----CLGGGVIEHTGKN 371


>gi|327393518|dbj|BAK10940.1| tRNA 5-methylaminomethyl-2- thiouridylate-methyltransferase TrmU
           [Pantoea ananatis AJ13355]
          Length = 370

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 199/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     D   R  + R  D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQ-----DSDGRSHLLRGGDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ + + R     A  G+I  ++GQ++G H G++
Sbjct: 180 RRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   +R+IV   G    L    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q  +P   + + DD + V F++    V  GQ+ VFY  D
Sbjct: 298 ----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYLGD 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 V----CLGGGIIE 362


>gi|315453196|ref|YP_004073466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter felis ATCC 49179]
 gi|315132248|emb|CBY82876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter felis ATCC 49179]
          Length = 346

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 194/371 (52%), Gaps = 32/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGGVDSS  A LL++ G++++GV L+L+   +        C        + V 
Sbjct: 1   MKVAVLMSGGVDSSYSAYLLQQAGHELLGVYLKLHGKEEKHALYIRNC--------QEVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+   V D +  F+  V   F  +Y  G+TP PC  CN  +KF   L      G + 
Sbjct: 53  KFLNIPFEVVDLQAEFKQGVYDAFVQAYEQGQTPNPCALCNPLMKFGLGLEFALNQGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    +   G   RI     D  +DQSYFL+A  Q+ +  L FPLGD+ K  +
Sbjct: 113 IATGHYAR----LEKVGGVLRIK-EAKDTSKDQSYFLYALPQKAIDRLLFPLGDLLKSEI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA E    +G D+    +SQ+ICFV+   Y D +K+ +  +  EG + +L G+++G H
Sbjct: 168 KPLALEKMPFLG-DLQTYKESQEICFVET-NYIDTLKK-HVQVDQEGIVRNLKGEVVGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  +    EP FVV +D   + +IVG +E+L +  +  R  +   +  
Sbjct: 225 RGYMHYTIGKRKGFTIKGAHEPHFVVGIDALKNEIIVGQKEALAICTLEARNKSLPSN-- 282

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           F++      +  VK+R    P    ++  DD +   FE    GVA GQA V Y  D    
Sbjct: 283 FKEG-----EYLVKVRYRSTPTSAHIRLEDDTIRARFENPVYGVALGQALVIYDQD---- 333

Query: 376 RVLGGGIISGS 386
           RVLGGG+I+ S
Sbjct: 334 RVLGGGVITKS 344


>gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus downei F0415]
 gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus downei F0415]
          Length = 374

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 191/379 (50%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 9   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 66  QIGIPYYSVNFEKEYWDRVFEYFLAKYRAGRTPNPDVMCNKEIKFKAFLDYAMSLGADYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 126 ATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A K DS  ICF+ +  + + +   N   A  G ++ L+G+ +G+H G++ 
Sbjct: 182 KIAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMLTLDGKDMGQHAGLMY 239

Query: 262 YTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTI         G       P FVV  D + + + VG     ++L    +    I++  D
Sbjct: 240 YTIGQRGGLGIGGQQGGGNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLKASTIHFTRD 299

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V    D   V F++ +  +  GQA VFY  D  
Sbjct: 300 TPEEFTM----ECTAKFRYRQPDSKVTVHVKGDQAEVVFDQPQRAITPGQAVVFYDGD-- 353

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGGII  + +++ V
Sbjct: 354 --ECLGGGIIDNAYKNEVV 370


>gi|189463744|ref|ZP_03012529.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM
           17393]
 gi|189438694|gb|EDV07679.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM
           17393]
          Length = 359

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 194/383 (50%), Gaps = 47/383 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  + RV+V MSGG+DS+    +LK  GY+++G+T+ ++              G +  +A
Sbjct: 2   NRPEKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVW--------------GDEPVEA 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R++ D++ + H+V D  E FR  ++  F   Y  G TP PCV CN T KF  L     +L
Sbjct: 48  RQLADSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKL 107

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++TGHY         +Y+  GDD K            +DQSYFL+   Q  L    
Sbjct: 108 DCAFISTGHYSHLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCL 155

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K  VR   RE G  + A++ +S ++CF+ +G Y D ++  +  I  E   G  
Sbjct: 156 FPLGTYTKLQVRKYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDREIGPGWF 214

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +  
Sbjct: 215 VNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLA 274

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
            + N + +  F  A+       V++R    P+P  V+R +DG ++V F      +A GQ+
Sbjct: 275 EQDNIIDEQEFFSAL----DLTVRVRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQS 330

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            VFY       RV+GG  I+  +
Sbjct: 331 AVFYIG----RRVVGGSFIASQR 349


>gi|319900025|ref|YP_004159753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319415056|gb|ADV42167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 357

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 197/384 (51%), Gaps = 49/384 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  + RV+V MSGG+DS+    +LK  GY+++G+T+ ++              G +  +A
Sbjct: 2   NVFEKRVLVGMSGGIDSTATCLMLKGQGYEIVGLTMWVW--------------GDEPVEA 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++ D++ + HY+ D  E FR  ++  F   Y+ G TP PCV CN   KF  L     +L
Sbjct: 48  GQLADSMGIEHYIVDERESFRRIIVQNFIDEYSGGRTPNPCVMCNPLFKFRILTEWADKL 107

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +ATGHY R      ++Y+  GDD K            +DQSYFL+   Q  L    
Sbjct: 108 CCKYIATGHYTRLEEINHKIYIIAGDDDK------------KDQSYFLWRLGQDVLKRCI 155

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K  VR+  R+ G  + A++ +S ++CF+ +G Y D +K  +  I  E   G  
Sbjct: 156 FPLGTYTKIQVREYLRDNGYTVKAEEGESMEVCFI-KGDYRDFLKEYSPEIDSEIGSGWF 214

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +  
Sbjct: 215 VNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTRYMLA 274

Query: 306 REINWLGDG-LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
            + N   +G  FE  V+      V+IR    P+P  V+R +DG + V F      +A GQ
Sbjct: 275 EQENLTDEGEFFESDVLT-----VRIRYRSKPIPCTVKRLEDGRLLVHFLIDASAIAPGQ 329

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
           + VFY     + RV+GG  I+  +
Sbjct: 330 SAVFYI----DKRVVGGAFIASQR 349


>gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cardiobacterium hominis ATCC 15826]
          Length = 369

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 195/382 (51%), Gaps = 29/382 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  ++ V +SGGVDSSV A LL+  GYDV G+ ++ +    +S   G C A +DV DAR
Sbjct: 7   PQGAKIAVGISGGVDSSVAALLLRDAGYDVFGIFMKNWEETYSS---GYCSAEEDVEDAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VC+T+ +  +  ++   +   V   F + Y AG TP P + CNR +KF+++     +LG
Sbjct: 64  DVCETLGIPLHTVNFVAEYHERVFRHFLAEYGAGRTPNPDILCNREIKFAEMAHYAAELG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LATGHY R   + G        + + +D  +DQSYFL   T  QL    FPLG M K
Sbjct: 124 ADYLATGHYARRGTHHGAPA-----LYKGVDGSKDQSYFLSQITPAQLDKALFPLGGMAK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A + GL   DK DS  ICF+ +  + D +   N      G ++   G  +G H 
Sbjct: 179 SDVRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLA--NYFENKPGKMITPQGVWVGEHI 236

Query: 258 GIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSS--RVIVGPRESLEVHRIYL--REI 308
           G++ YTIGQR+GLG+        EP +V  LDKN +   +IVG  E   ++   L  R++
Sbjct: 237 GLMYYTIGQRQGLGIGGIAGASEEPWYV--LDKNPADNTLIVGQGEHPLLYHDTLTARQL 294

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            WL +      V   ++   + R    P  +  Q  D+ + V F++ +  +  GQ  V Y
Sbjct: 295 AWLNEAPEAGRV---YQAKTRYRQPDQPCRITWQGEDE-ITVQFDEPQRAITPGQYLVLY 350

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +    R LGGG+I      D
Sbjct: 351 DGE----RCLGGGVIEARSNRD 368


>gi|54297299|ref|YP_123668.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str.
           Paris]
 gi|81601865|sp|Q5X5H6|MNMA_LEGPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53751084|emb|CAH12495.1| hypothetical protein lpp1344 [Legionella pneumophila str. Paris]
          Length = 361

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 191/371 (51%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +   +       C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDFCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +  G  G     + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  G+I    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+     +  EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
             +E+ +     CF K R  Q      +   D+ + YV F   +  +  GQ  VFY  + 
Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNLHYVIFSSPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGII 383
              + LGG  I
Sbjct: 349 ---QCLGGATI 356


>gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
 gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. WCH70]
          Length = 370

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 25/380 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R     G     +  + R  D  +DQ+YFL   T + L  + FP+G++ K+
Sbjct: 119 DYIATGHYARISRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  + + +K  N   A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLK--NYLPAQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G  +V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 LG  II    + DA
Sbjct: 348 V----CLGSAIIDEVIKMDA 363


>gi|188494195|ref|ZP_03001465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 53638]
 gi|188489394|gb|EDU64497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 53638]
          Length = 368

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  +
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDGE 352

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 353 V----CLGGGIIE 361


>gi|322833617|ref|YP_004213644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rahnella sp. Y9602]
 gi|321168818|gb|ADW74517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rahnella sp. Y9602]
          Length = 369

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 194/373 (52%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEE---YCTAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     D      + R +D  +DQSYFL+    +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQ-----DINGVSHLLRGIDGNKDQSYFLYTLGHEQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I  ++GQ++G+H G++
Sbjct: 180 RRIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIKSVDGQVMGQHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP + V  D +N+   +    E   +  + L  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGQKDGSEEPWYTVEKDVENNILYVAQGHEHPRLMNVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +     C VK R  Q+ +P V     DD + V F+     V  GQ+ VFY  +
Sbjct: 298 ----RKTLTGPLTCTVKTRYRQEDIPCVVTPLGDDRIEVRFDAPVAAVTPGQSAVFYLGE 353

Query: 372 SNEARVLGGGIIS 384
                 LGGG+I 
Sbjct: 354 V----CLGGGVIE 362


>gi|320086325|emb|CBY96098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 383

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           M+   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MIEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++
Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  +   +DD +
Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|308049705|ref|YP_003913271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ferrimonas balearica DSM 9799]
 gi|307631895|gb|ADN76197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ferrimonas balearica DSM 9799]
          Length = 367

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 201/378 (53%), Gaps = 33/378 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A QD+ DA+ 
Sbjct: 5   RNKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDTEE---YCAASQDLADAQA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LG
Sbjct: 62  VCDKLGIELHSVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEALG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R R    +DG+    M R +D  +DQSYFL+    + +    FP+G+++K
Sbjct: 122 ADYIATGHYVRRRQR--EDGQFE--MLRGLDGNKDQSYFLYTLGHEHVAQTLFPVGELEK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E  L  A K DS  ICF+ + K+ D + +     A  GDI    G+++G+H+
Sbjct: 178 PEVRRIAEEQDLITAGKKDSTGICFIGERKFKDFLAKYLP--AQPGDIETTEGEVIGQHD 235

Query: 258 GIINYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           G++ +T+GQR+GL +      GE P +VV  D   + +IVG     PR  L  + +   +
Sbjct: 236 GLMYHTLGQRKGLRIGGLKDAGEAPWYVVDKDLERNVLIVGQGADNPR--LFSNGLVANQ 293

Query: 308 INWLG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           ++W+   G   + VV      VK R  Q  +P  V    DG + V F +    V  GQ+ 
Sbjct: 294 LHWVDRTGPQGETVVS-----VKTRYRQQDIPCTVTPLADGELEVRFHEPVSSVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D      LGGGII
Sbjct: 349 VFYQGDV----CLGGGII 362


>gi|299065725|emb|CBJ36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum CMR15]
          Length = 370

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 187/375 (49%), Gaps = 27/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPL +M K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLSEMPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G+H G+  
Sbjct: 177 EIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TQPGPIRTPDGKTIGQHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   +G +   K R  Q   P  V   + D + + FE+++  V  GQ+ V Y  D 
Sbjct: 295 ----HPPAEGTQLAAKTRYRQADAPCAVTSASGDALTLTFEQAQWAVTPGQSAVLYDGDI 350

Query: 373 NEARVLGGGIISGSK 387
                LGGGII+ ++
Sbjct: 351 ----CLGGGIIASTE 361


>gi|331703443|ref|YP_004400130.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801998|emb|CBW54152.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 384

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 13  KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINNDICPQEQDFL 72

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA+ V D +N+  +  D+ + + + V   F   Y    TP P + CN+ +KF   L+   
Sbjct: 73  DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 132

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            QL AD +A GHY +      +   ++  + +  D  +DQ+YFL    Q QL    FPL 
Sbjct: 133 NQLNADYIAMGHYAKVEF---NKTTKQYELIKASDTNKDQTYFLSQLNQNQLSKTLFPLA 189

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ KE VR +A E  L  A+K DS  ICF+ +  + D ++  N   +  GDIV +   ++
Sbjct: 190 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQ--NYIPSQTGDIVDIKTNKV 247

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306
           LG+H GI+ YTIGQR+G+ ++ M EP +V   DK+  + I+       +  L     ++ 
Sbjct: 248 LGKHIGIMYYTIGQRKGIHLSGMSEPYYVA--DKDVEKKILYVCSTSDQSYLYSTSCFVN 305

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           +INW+ D     + V+ FKC  K R  Q+   V V++ DD  Y V FEK    +  GQ  
Sbjct: 306 DINWILDLSKYVSDVNEFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 365

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D      LGG +I
Sbjct: 366 VFYLDDI----CLGGAVI 379


>gi|237749831|ref|ZP_04580311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter bilis ATCC 43879]
 gi|229374581|gb|EEO24972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter bilis ATCC 43879]
          Length = 347

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 197/374 (52%), Gaps = 32/374 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +++N K  +V + MSGGVDSS  A LL++ GY+V+G+ L+L++  +             +
Sbjct: 1   MEQNKK--KVALLMSGGVDSSYSAYLLQQQGYEVLGIYLKLHDKEEKH--------AVFI 50

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +  +VC+ + +   + + +E F+ AV   F  SY  GETP PC  CN  +KF   L+  
Sbjct: 51  RNCEKVCEFLGLEFKIIEAKEEFKKAVYNEFIESYKRGETPNPCALCNPLMKFGLALNAA 110

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G + +ATGHY R    +  DG +R    R  D  +DQSYFL+A +Q  +  L FPLG
Sbjct: 111 LGYGCEYIATGHYAR---IISIDGIKRIQEAR--DKSKDQSYFLYAISQDAINRLIFPLG 165

Query: 194 DMKKESVRD---LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           DM KE V+     A  +  D+    +SQ+ICFV+   Y D++K+ +  +  +G +    G
Sbjct: 166 DMLKEEVKPKAFAALPILGDLESYKESQEICFVET-DYIDILKK-HVSVENKGVVRDTQG 223

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
            I+G H G + YTIG+R+G  V    EP FV+ ++   + ++VG +E LE        + 
Sbjct: 224 NIVGEHKGYMQYTIGKRKGFSVKGAHEPHFVLKINPKDNEIVVGKKEELETFC-----VT 278

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            L   L  + +   +K  V+ RS+     + +Q  DD +    ++   GVA GQA V Y 
Sbjct: 279 ALNKSLPNEFINGEYKAKVRYRSTPSNATITIQ--DDKIIATLKEPVYGVAKGQALVIYK 336

Query: 370 SDSNEARVLGGGII 383
            D     VLGGG+I
Sbjct: 337 DDI----VLGGGVI 346


>gi|34498857|ref|NP_903072.1| tRNA-specific 2-thiouridylase MnmA [Chromobacterium violaceum ATCC
           12472]
 gi|81653627|sp|Q7MBE1|MNMA_CHRVO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|34104709|gb|AAQ61066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromobacterium violaceum ATCC 12472]
          Length = 384

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 186/370 (50%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV MSGGVDSSV A LLK+ G++VIGV +Q +      +    C   QD  DA  V D
Sbjct: 32  RIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDEY---CSIKQDALDAMSVAD 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   + ++ + +++ V   F   Y+AG TP P V CN  +KF   L    +LGAD +
Sbjct: 89  IVGIDMEIVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGADCI 148

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +  DG     + + +D  +DQSYFL+   Q QL    FPLGD++K  VR
Sbjct: 149 ATGHYARK---LEQDGT--HYLMKAVDHTKDQSYFLYRLQQHQLAKAIFPLGDIRKTEVR 203

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + ++R        G +V  +G+++G H G++ 
Sbjct: 204 RLAEEAGLPTAAKKDSTGICFIGERPFREFLQRYLP--TSPGQMVTPDGKVVGEHIGLMY 261

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVH-RIYLREINWLGD 313
           YT+GQR+GL +       GEP FV   D   +++IV  G    L +   + + +++W   
Sbjct: 262 YTLGQRKGLTIGGSRDGNGEPWFVAGKDIPGNKLIVVQGHDHPLLLKPTLSMADLSW--- 318

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               DA   G           D         D    + F++ +  V  GQ+ V Y  D  
Sbjct: 319 -TLPDAPAPGEYSAKNRYRMADAACTLSPIVDGQASLTFQEKQWAVTPGQSAVLYHGDI- 376

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 377 ---CLGGGII 383


>gi|331682639|ref|ZP_08383258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H299]
 gi|331080270|gb|EGI51449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H299]
          Length = 368

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  +
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDGE 352

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 353 V----CLGGGIIE 361


>gi|237802710|ref|YP_002887904.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273944|emb|CAX10736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 358

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 195/368 (52%), Gaps = 27/368 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFYKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGIIS 384
            LGGG+I 
Sbjct: 344 CLGGGVIE 351


>gi|290475827|ref|YP_003468719.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus bovienii SS-2004]
 gi|289175152|emb|CBJ81955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus bovienii SS-2004]
          Length = 367

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 34/383 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           LD + K  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 2   LDNSQK--KVIVGMSGGVDSSVSAYLLQQQGYKVAGLFMKNWEEDDDEE---YCSAAADL 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 57  ADAQAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R     DG  +  + R +D  +DQSYFL+  + QQ+    FP+
Sbjct: 117 AEDLGADYIATGHYVRRRDV---DGISQ--LLRGLDGNKDQSYFLYTLSHQQIAKSLFPV 171

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR LA E+GL  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ 
Sbjct: 172 GELEKPEVRRLAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGSIITVDGQT 229

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G+H G++ +T+GQR+GLG+        E  +VV  D  ++ +IV      PR  L    
Sbjct: 230 IGQHTGLMYHTLGQRKGLGIGGTKDGSEEAWYVVDKDVENNTLIVAQGHDHPR--LMSVG 287

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVAS 361
           +  ++++W+       A+    +C VK R  Q  +P   +  ++D + V F+     V  
Sbjct: 288 LIAQQLDWVD----RQALKTEIRCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTP 343

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY  +      LGGG+I 
Sbjct: 344 GQSAVFYQGEI----CLGGGVIE 362


>gi|170727050|ref|YP_001761076.1| tRNA-specific 2-thiouridylase MnmA [Shewanella woodyi ATCC 51908]
 gi|205816913|sp|B1KID0|MNMA_SHEWM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169812397|gb|ACA86981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella woodyi ATCC 51908]
          Length = 377

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 202/374 (54%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 18  KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD 
Sbjct: 75  KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADDILDADY 134

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      DD  + + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 135 IAMGHYVRRS----DDSGQSQ-MLRGIDGNKDQSYFLYTLSHEQVSRSLFPVGELEKSEV 189

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+EMGL   DK DS  ICF+ + K+ D +       A  G+I    G+++G H G++
Sbjct: 190 REIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP--AQPGNIETAEGEVIGTHQGLM 247

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  +P +VV  + + + ++VG     PR  L     Y  +++W
Sbjct: 248 YHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGNHPR--LMSTGFYADQLHW 305

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           + D +  D   +G K  VK R  Q  V   +  + +D V V F++    V  GQ+ VFY 
Sbjct: 306 V-DRIGPD---NGAKITVKTRYRQRDVACSLHYDGEDRVKVLFDEPVAAVTPGQSAVFYD 361

Query: 370 SDSNEARVLGGGII 383
           ++      LGGGII
Sbjct: 362 AEV----CLGGGII 371


>gi|291279546|ref|YP_003496381.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Deferribacter desulfuricans SSM1]
 gi|290754248|dbj|BAI80625.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Deferribacter desulfuricans SSM1]
          Length = 346

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 199/365 (54%), Gaps = 29/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++VAMSGGVDSSV A  + ++G+DV+GVTL+L++S    K          + DA  V  
Sbjct: 4   KIIVAMSGGVDSSVAAYKMLKEGFDVVGVTLKLFDSENTEKM---------IADAESVAK 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V DY   F++ VI  F +SY  GETP PC  CN+T KF  L +  ++  A  +
Sbjct: 55  LLGIKWCVADYSSYFKD-VISYFINSYRKGETPNPCAYCNKTAKFVYLFNEMQKNNAKYI 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESV 200
           ATGHY +    +  +GK+   + +  +L++DQSY+L      Q+  L+FPL ++  K+  
Sbjct: 114 ATGHYAK---IIEKNGKK--YIGKATNLQKDQSYYLALLDSFQISLLKFPLSEIDSKDET 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A+E+GL +++K DSQ++CF+    Y + + +++++    +G +++ NG+ L  H G+
Sbjct: 169 RQIAKEIGLPVSEKKDSQEVCFLCGRNYREFLSEKVDSKRFKKGYMIY-NGKKLREHEGV 227

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGLG+   EPL+V  +D     + +  +E +    + LR++N + D L    
Sbjct: 228 EFYTVGQRRGLGLNYHEPLYVKEIDAKKGNIYLAKKEEVVKRGVKLRDVNMVDDRL---- 283

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               FK   KIR   +     V+   +    + FEK +     GQ    Y  D     V+
Sbjct: 284 --RVFKAKAKIRYRMNEEDCLVEILPESKALILFEKPQFAPTKGQLAAIYLDDI----VV 337

Query: 379 GGGII 383
           GGG I
Sbjct: 338 GGGFI 342


>gi|255348647|ref|ZP_05380654.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70]
 gi|255503187|ref|ZP_05381577.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70s]
          Length = 358

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   IIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|260779096|ref|ZP_05887988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605260|gb|EEX31555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 373

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 196/377 (51%), Gaps = 32/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      D+G++ + M R +D  +DQSYFL+  +  Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRTF--PDNGEKPQ-MLRGLDGNKDQSYFLYTLSSDQIARSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQDLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308
            +T+GQR+GL +          +P +V   DK+  R ++          L+   +   ++
Sbjct: 244 YHTLGQRKGLHIGGQKGGGGNEDPWYVA--DKDLKRNVLIAVQGAEHPLLKSQGLIASQL 301

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+      + +    +C VK R  Q  +P   +  +D+ + V F+  +V V  GQ+ VF
Sbjct: 302 HWVD----REIIKAPLQCSVKTRYRQTDIPCTIIPIDDENIKVIFDDPQVAVTPGQSAVF 357

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  D      LGGGII 
Sbjct: 358 YKDDV----CLGGGIIE 370


>gi|91781835|ref|YP_557041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia xenovorans LB400]
 gi|123359156|sp|Q145K0|MNMA_BURXL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91685789|gb|ABE28989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 381

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 178/373 (47%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVR-----ENNGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L  A K DS  ICF+ +  + D + R        G +    G+++G H G+  
Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYTS 370
               +   DGF C  K R  Q   P        G     ++F+ ++  V  GQ+ V Y  
Sbjct: 295 ----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDVAQWAVTPGQSAVLYDG 350

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 351 DV----CLGGGII 359


>gi|50121369|ref|YP_050536.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium atrosepticum
           SCRI1043]
 gi|71658013|sp|Q6D4E9|MNMA_ERWCT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49611895|emb|CAG75344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 368

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 200/376 (53%), Gaps = 33/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       DGK R  + R MD  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ + + + +G+H G+
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237

Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+      GE P +VV  DK+ +  I+   +  E  R+       ++++
Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVV--DKDVANNILYVAQGHEHPRLMSYGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+        +    +C VK R  Q  +   V    DD + V F++    V  GQ+ VFY
Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADISCTVTPLGDDRITVRFDEPFAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGGII 
Sbjct: 352 LDDV----CLGGGIIE 363


>gi|296161025|ref|ZP_06843836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. Ch1-1]
 gi|295888724|gb|EFG68531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. Ch1-1]
          Length = 381

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 177/373 (47%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAISLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG+  K  VR
Sbjct: 122 ATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGETPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L  A K DS  ICF+ +  + D + R        G +    G+++G H G+  
Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYTS 370
               +   DGF C  K R  Q   P        G     ++F+ ++  V  GQ+ V Y  
Sbjct: 295 ----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDTAQWAVTPGQSAVLYDG 350

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 351 DV----CLGGGII 359


>gi|157736746|ref|YP_001489429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
 gi|205810440|sp|A8ES36|MNMA2_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|157698600|gb|ABV66760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
          Length = 367

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 205/381 (53%), Gaps = 34/381 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77
           K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ +        KGS C  + +  DA+
Sbjct: 3   KNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEY----GIKGSQCPNRIEFEDAK 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V   I +     D+ + +R+ V   F      G TP P + CN+ +KF+  L+  + +G
Sbjct: 59  KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY +   Y     K   ++  P D  +DQSYFL A + +QL    FPLGD+ K
Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR++AR   L ++DK DS  ICF+   K+ + + +     A+ GDI+  NG+++G+H 
Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231

Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IY 304
           G++ YT+GQR+G+G+             +P FV   D   N+  ++      L + + + 
Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++W    + E+A   G K   ++R   Q      V+ N++ V V+F+  +  V  GQ
Sbjct: 292 ASHMHW----VLEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVEFDNPQRAVTLGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y+ D      LGGG IS
Sbjct: 348 SLVLYSGD----YCLGGGFIS 364


>gi|227886510|ref|ZP_04004315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 83972]
 gi|300975599|ref|ZP_07173078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 45-1]
 gi|301051077|ref|ZP_07197911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 185-1]
 gi|227836714|gb|EEJ47180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 83972]
 gi|300297249|gb|EFJ53634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 185-1]
 gi|300410262|gb|EFJ93800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 45-1]
 gi|315293099|gb|EFU52451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 153-1]
          Length = 383

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 210/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+   + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|294788306|ref|ZP_06753549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Simonsiella muelleri ATCC 29453]
 gi|294483737|gb|EFG31421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Simonsiella muelleri ATCC 29453]
          Length = 363

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 194/374 (51%), Gaps = 22/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++  ++V +SGGVDSSV AALLK+DG +V GV +Q +      +    C   QD  DA  
Sbjct: 3   ENQNIIVGLSGGVDSSVTAALLKQDGANVHGVFMQNWEDDNNDQY---CSIKQDSLDAMA 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +   + ++  ++++ V   F   YAAG TP P V CN  +KF   L    + GA
Sbjct: 60  VADIIGIDIDIVNFATQYKDKVFAYFLQEYAAGRTPNPDVLCNAEIKFKCFLDYAIEQGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R ++  G        + R +D  +DQSYFL+     QL    FPLG ++K 
Sbjct: 120 EAIATGHYARKQIRNG-----VHYLLRGLDNNKDQSYFLYRLQPHQLEKSLFPLGHLQKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA E+ L  A K DS  ICF+ +  + + +++        G++V   G+I+G H G
Sbjct: 175 EVRRLATELKLPTATKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 232

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGDG 314
           +  YTIGQR+GLG+   GEP FVV   L KN   V+ G   E L  + + + +++W    
Sbjct: 233 LTFYTIGQRKGLGIGGAGEPWFVVGKDLPKNELLVVQGHDHELLYTNSLEMNQLSWT--- 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           L E  V   + C  + R + D        +DD   + F + +  V  GQ+ V Y  +   
Sbjct: 290 LPEKPVAGRYTCKTRYRMA-DAACELRYLSDDTAELLFNEPQWAVTHGQSAVLYDGEI-- 346

Query: 375 ARVLGGGIISGSKR 388
              LGGGII+ + +
Sbjct: 347 --CLGGGIITATDK 358


>gi|34762114|ref|ZP_00143122.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888191|gb|EAA25249.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 343

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 28/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y  G TP PC+ C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY     S+++       + ++     + +DQSY L+  +  +L  L FPL    K+
Sbjct: 113 ATGHYTSVEYSKIF------SKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKSYSKQ 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A ++GL++ DK DSQ +CF ++G Y   +K       ++G+ +  +G ILG+H G
Sbjct: 167 EIREIALKIGLEVYDKKDSQGVCFAKEG-YKKFLKENLKDEIVKGNYIDKDGNILGQHEG 225

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L  IN+     +E 
Sbjct: 226 YQLYTIGQRRGLGINLSKPVFITEIKPQTNEIVLGEFSELFTDKVEL--INYKFSVGYEK 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             ++  +   + R S       + +N + +Y  + +     A GQ  VF+     +  V+
Sbjct: 284 --LEDLELLARPRFSSTGFYGKLIKNKNKIYFKYNEENTHNAKGQHIVFFY----DGFVV 337

Query: 379 GGGII 383
           GGG I
Sbjct: 338 GGGEI 342


>gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM]
 gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|73920126|sp|Q5FKU0|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 375

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 188/378 (49%), Gaps = 23/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    S   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++      D      M RP D  +DQ+YFL   +Q Q+  + FPL ++ K  V
Sbjct: 124 IAMGHYAKTIT----DANGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V   G+++G H G++
Sbjct: 180 REIALANGLVTAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPEGKVVGEHAGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F
Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLKASDMSFF 295

Query: 317 EDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSDS 372
                  F+  C  K R  Q  + V V+ + D   VD  F++    V  GQA V Y    
Sbjct: 296 TGKPDHDFEMHCTAKFRYRQCDIGVTVKYHADDNTVDVYFDEPARAVTPGQALVLY---- 351

Query: 373 NEARVLGGGIISGSKRSD 390
           N    +GGG I  + + D
Sbjct: 352 NGEECIGGGNIDAAFQED 369


>gi|317047745|ref|YP_004115393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. At-9b]
 gi|316949362|gb|ADU68837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. At-9b]
          Length = 370

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DG+ R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQDI---DGQSR--LLRGLDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I  ++G+I+G H G++
Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGAIETVDGEIVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   +R+IV   G    L    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGRKESNDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C VK R  Q  +P   +   DD + V F++    V  GQ+ VFY  D
Sbjct: 298 ----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 V----CLGGGIIE 362


>gi|126667269|ref|ZP_01738242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter sp. ELB17]
 gi|126628214|gb|EAZ98838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter sp. ELB17]
          Length = 374

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 187/370 (50%), Gaps = 23/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+ DA+ V D I + 
Sbjct: 1   MSGGVDSSVAAWLLKEQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVADHIGIK 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            +   +   + + V   F S Y AG TP P + CN+ VKF   L     LGAD +ATGHY
Sbjct: 58  LHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYAITLGADYIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R      DDG  +  + + +D  +DQSYFL A +  ++    FP+G+++K  VR +A  
Sbjct: 118 TRQCPL--DDGSGKAQLLKGLDDNKDQSYFLHAVSGDRIARTLFPVGELEKPEVRRIAEA 175

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL   DK DS  ICF+ + K+ D +K+     A  G I    G I+GRH G++ +TIGQ
Sbjct: 176 QGLVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGTIETPEGDIIGRHQGLMYHTIGQ 233

Query: 267 RRGLGVA-----MGEPLFVVYLDKNSSRVIV--GPRESLEVHR-IYLREINWLGDGLFED 318
           R+GLG+        EP +V   D   + +I   G    L   R +    ++W+      +
Sbjct: 234 RQGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQGKNHPLLFSRGLVSGPVDWVA----AE 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           A    F+C  K R  Q      V   D GV V F+ ++  V  GQ+ VFY  +      L
Sbjct: 290 APSAKFRCMAKTRYRQPDQLCEVTVIDGGVKVVFDDAQRAVTPGQSAVFYDGEI----CL 345

Query: 379 GGGIISGSKR 388
           GGG+I  + R
Sbjct: 346 GGGVIEHTWR 355


>gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1]
 gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1]
          Length = 375

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 193/387 (49%), Gaps = 27/387 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    S   G C A +D  D ++V D
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L AD +
Sbjct: 65  KIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ K  VR
Sbjct: 125 AMGHYAKTV----KDANGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++ 
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F 
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLKASDMSFFT 296

Query: 318 DAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 F+  C  K R  Q  + V V+ +  D+   V F++    V  GQA V Y  +  
Sbjct: 297 GKPDHDFEMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGE-- 354

Query: 374 EARVLGGGIISGSKRSDAVEESLLSVI 400
               LGGG I  + +    EE  L ++
Sbjct: 355 --ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1112]
 gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
 gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1112]
 gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
 gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1118]
          Length = 375

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 189/378 (50%), Gaps = 23/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V 
Sbjct: 7   IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD 
Sbjct: 64  DKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ K  V
Sbjct: 124 IAMGHYAKTV----KDANGVTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++
Sbjct: 180 REIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLM 237

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F
Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLKASDMSFF 295

Query: 317 EDAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDS 372
                  F+  C  K R  Q  + V V+ +  D+   V F++    V  GQA V Y    
Sbjct: 296 TGKPDHDFEMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLY---- 351

Query: 373 NEARVLGGGIISGSKRSD 390
           N    LGGG I  + + D
Sbjct: 352 NGEECLGGGNIDAAYQED 369


>gi|52841619|ref|YP_095418.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603374|sp|Q5ZVQ1|MNMA_LEGPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52628730|gb|AAU27471.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|307610092|emb|CBW99633.1| hypothetical protein LPW_14011 [Legionella pneumophila 130b]
          Length = 361

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 190/371 (51%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +   +       C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDYCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +  G  G     + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  G+I    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+     +  EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
             +E+ +     CF K R  Q      +   D+   YV F   +  +  GQ  VFY  + 
Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNQHYVMFSSPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGII 383
              + LGG  I
Sbjct: 349 ---QCLGGATI 356


>gi|237731114|ref|ZP_04561595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter sp. 30_2]
 gi|226906653|gb|EEH92571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter sp. 30_2]
          Length = 383

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 214/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           M+   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MLEYAALKFNVVSIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R       DGK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G+ +G+H G++ +T+GQR+GLG+        +P +VV  D +N+  V+
Sbjct: 231 --AQPGKIITVDGEEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  D + +
Sbjct: 289 AQGHEHPRLMSVGLVAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDAERI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|148980425|ref|ZP_01816047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrionales bacterium SWAT-3]
 gi|145961228|gb|EDK26541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrionales bacterium SWAT-3]
          Length = 378

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 202/386 (52%), Gaps = 27/386 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     + +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D
Sbjct: 3   DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             + L AD +A GHY+R      ++ +   +  M R +D  +DQSYFL+  +  Q+    
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELEAGVKPEMLRGLDSNKDQSYFLYTLSSDQVARSL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  GDI    
Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPE 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LE 299
           G+++G+HNG++ +T+GQR+GL +          +P FV   D K +  + V  ++   L+
Sbjct: 238 GKVIGKHNGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVG 358
              +   +++W+        + +   C VK R  Q  +P   +  +D+ + V F++ ++ 
Sbjct: 298 SEGLIASQLHWVN----RTPIAEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           V  GQ+ VFY  D      LGGGII 
Sbjct: 354 VTPGQSAVFYQDDV----CLGGGIIE 375


>gi|89898460|ref|YP_515570.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila felis Fe/C-56]
 gi|123483134|sp|Q253W3|MNMA_CHLFF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89331832|dbj|BAE81425.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 361

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 193/376 (51%), Gaps = 25/376 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVVAMSGGVDSSVVA LLK    Y V+G+ ++ +        +G C   +D  D  +V  
Sbjct: 5   VVVAMSGGVDSSVVAYLLKNYTSYKVLGLFMKNWEEEDG---EGLCSTAKDYEDVEKVAG 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + +R  V   F + Y+ G TP P V CNR +KF  L    R+LG D L
Sbjct: 62  QLDIPYYTVSFAKEYRERVFSRFLTGYSEGYTPNPDVLCNREIKFDLLQKKVRELGGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D     ++ R +D ++DQSYFL  T ++ L ++ FPLGD  K  VR
Sbjct: 122 ATGHYCR----VSPDENGVNLL-RGIDPQKDQSYFLCGTRKESLENVIFPLGDKTKTEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260
            +A + GL  A K DS  ICF+ +  +   +++      LEG+IV  + Q ++G H G  
Sbjct: 177 SIAAQAGLATAQKRDSTGICFIGKRPFKSFLEKFVPN--LEGNIVDYDSQRVVGHHEGAH 234

Query: 261 NYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREINWLGDGLF 316
            YTIGQRRGL +   E P +VV   ++KN   ++ G    L     +  RE+NW      
Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTARELNW----FV 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               +      V+ RS+ +   + + R +D V V F      +  GQA  FY  +    R
Sbjct: 291 SPKSITTCSAKVRYRSNDEECEILL-RGEDEVLVRFASPVKAITPGQAIAFYDGE----R 345

Query: 377 VLGGGIISGSKRSDAV 392
            LGGG+I  S    +V
Sbjct: 346 CLGGGVIEISMTPQSV 361


>gi|194433661|ref|ZP_03065937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1012]
 gi|194418090|gb|EDX34183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1012]
 gi|320179167|gb|EFW54125.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella boydii ATCC 9905]
 gi|332089265|gb|EGI94371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii 5216-82]
 gi|332092905|gb|EGI97973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 155-74]
          Length = 368

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGVHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|323497848|ref|ZP_08102859.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
 gi|323317076|gb|EGA70076.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
          Length = 369

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 32/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      ++G++ + M R +D  +DQSYFL+  +  Q+    FP+G+++K  V
Sbjct: 125 IAMGHYVRRTF--PENGEKAQ-MLRGLDSNKDQSYFLYTLSSDQVERSLFPVGELEKPEV 181

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L  A K DS  ICF+ + K+ + + +     A  GDI    G+++G+H G++
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPEGKVIGQHQGLM 239

Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308
            +T+GQR+GL +          EP FV   DK+  R ++          L+   +   ++
Sbjct: 240 YHTLGQRKGLHIGGQKGGGGNEEPWFVG--DKDLKRNVLIAVQGKDHPLLKSEGLIASQL 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+        + D  KC VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ VF
Sbjct: 298 HWVD----RTPIKDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVF 353

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LGGGII 
Sbjct: 354 YQDEV----CLGGGIIE 366


>gi|262066347|ref|ZP_06025959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379911|gb|EFE87429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 343

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 188/362 (51%), Gaps = 22/362 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +             + +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEE----------SSKDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  V  +  AD +
Sbjct: 53  RLGIIHEVVNIRKNFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEVANKYKADYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         +   + ++     + +DQSY L+    ++L  L FPL    K+ +R
Sbjct: 113 ATGHYTSVEY---SETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL++ DK DSQ +CF ++G Y + +K       ++G+ +   G+ILG+H G   
Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKEGKILGQHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + + +F+  +   ++ +++G    L    I L    +  +  FE   +
Sbjct: 229 YTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIKLTNYKFAVE--FEK--I 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                  + R S       + +N D +   + +     A GQ  VF+  +     V+GGG
Sbjct: 285 KDLNLLARPRFSSTGFYGKLIKNSDKICFKYNERNAHNAKGQHVVFFYDNF----VIGGG 340

Query: 382 II 383
            I
Sbjct: 341 EI 342


>gi|330815569|ref|YP_004359274.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3]
 gi|327367962|gb|AEA59318.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3]
          Length = 390

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 180/381 (47%), Gaps = 36/381 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 ETIATGHYARVREREG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +    G+ +G H G
Sbjct: 174 RVREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKRVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-----I 308
           +  YT GQR+G+G+       GEP FV   D  S+ + V   +  E   +  RE     +
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVA--QGHEHPWLLSRELVAGNV 289

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASG 362
           +W+      +   DGF C  K R  Q   P    R   G        + F+  +  V  G
Sbjct: 290 SWVAG----EPPADGFACGAKTRYRQADAPCSFARAKAGEAGEARFSLGFDTPQWAVTPG 345

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ V Y  +      LGGGII
Sbjct: 346 QSAVLYDGEI----CLGGGII 362


>gi|291085497|ref|ZP_06353231.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter youngae ATCC 29220]
 gi|291071151|gb|EFE09260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter youngae ATCC 29220]
          Length = 383

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 214/396 (54%), Gaps = 32/396 (8%)

Query: 1   MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           M+   A + N  S+ + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +   
Sbjct: 1   MLEYAALKFNVVSIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
              +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P +
Sbjct: 59  DGEE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115

Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            CN+ +KF   L    + LGAD +ATGHY+R       DGK R  + R +D  +DQSYFL
Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDGNKDQSYFL 170

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           +    +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R   
Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP 230

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291
             A  G I+ ++G+ +G+H G++ +T+GQR+GLG+        +P +VV  D +N+  V+
Sbjct: 231 --AQPGKIITVDGEDIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVV 288

Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV 348
               E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  D + +
Sbjct: 289 AQGHEHPRLMSVGLVAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDAERI 344

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            V F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|152997270|ref|YP_001342105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
 gi|205816876|sp|A6W0E1|MNMA_MARMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150838194|gb|ABR72170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
          Length = 390

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 192/374 (51%), Gaps = 27/374 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+V MSGGVDSSV A +L + GY V G+ ++ ++    ++    C A  D+ DA+ V
Sbjct: 30  DKKVIVGMSGGVDSSVSALILMQQGYQVEGLFMKNWDEDDGTE---YCTAKDDLADAQAV 86

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     L AD
Sbjct: 87  SDKLGIKLHTANFASEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAMALNAD 146

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R     G+      ++ + +D  +DQSYFL+A  + ++    FP+G+++K  
Sbjct: 147 YIATGHYVRRGEKNGEP-----LLLKGLDGNKDQSYFLYAVGKDEIAKTLFPVGELEKTE 201

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E GL   +K DS  ICF+ + ++ D +++     A  GDI  L G  + RH+G+
Sbjct: 202 VRRLAEEFGLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETLEGDKIARHHGL 259

Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311
           + +TIGQR+GLG+        +P +VV  D   + +IV   G  ESL    +     +W+
Sbjct: 260 MYHTIGQRQGLGIGGLAKYSDDPWYVVEKDLERNVLIVTQGGQHESLFKTHLIADNFDWV 319

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                 +       C  K R  Q      +    DG V V F + +  V  GQ+ VFY  
Sbjct: 320 A----REKPTFPLTCKAKCRYRQSDQECTINELADGRVEVSFVEPQRAVTPGQSVVFYVD 375

Query: 371 DSNEARVLGGGIIS 384
           D      LGGGII+
Sbjct: 376 DV----CLGGGIIN 385


>gi|184200523|ref|YP_001854730.1| tRNA-specific 2-thiouridylase MnmA [Kocuria rhizophila DC2201]
 gi|205816858|sp|B2GL48|MNMA_KOCRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183580753|dbj|BAG29224.1| putative tRNA uridine-sulfurtransferase [Kocuria rhizophila DC2201]
          Length = 383

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 140/386 (36%), Positives = 202/386 (52%), Gaps = 32/386 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V GV L L  +   + R G+  CC  +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHEVTGVHLALSRT-PGTLRTGARGCCTIEDSRDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + + +YV+D+ ERF+  V+  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AAEKLGIPYYVWDFSERFQADVVDDFVAEYAAGRTPNPCMRCNEKIKFAALLEKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  +++  G DG +   + R  D  +DQSY L   T +QL    FPL +   K
Sbjct: 120 DAVCTGHY--AKVVEGPDGHKE--LHRAADWAKDQSYVLGVLTAEQLEHAIFPLAETPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256
             VR  A E GL +A K DS DICF+  G   D    +   + L+ G IV   G  LG H
Sbjct: 176 AQVRAEAEERGLSVATKPDSHDICFIPDG---DTRGWLADHMDLDPGRIVDTEGNELGEH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGL +      G+P FV+ +   ++ V+VGP + L +  +     +W G
Sbjct: 233 RGAQAYTVGQRRGLHIGRPAPDGKPRFVLEIRPKTNEVVVGPEQLLAIDVMEGIRPSWAG 292

Query: 313 DGLFEDAVV--------DGFKCFVKIRSSQDPVP--VFVQRNDDG--VYVDFEKSEVGVA 360
               E A +        + F+  V++R+  DP P   ++ R++    ++V  + ++ GVA
Sbjct: 293 LPPREVAALGADPKARSEEFEVTVQVRAHGDPAPARAWLTRSEGTPRLHVRLDTAQRGVA 352

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ  V Y       RVLG   I  +
Sbjct: 353 PGQTMVLYQG----TRVLGQATIDAA 374


>gi|254506120|ref|ZP_05118264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus 16]
 gi|219550938|gb|EED27919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus 16]
          Length = 374

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 196/379 (51%), Gaps = 31/379 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124

Query: 141 LATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +A GHY+R      +  D   +  M R +D  +DQSYFL+  +  Q+    FP+G+++K 
Sbjct: 125 IAMGHYVRRTFPTQEELDAGAKPEMLRGLDSNKDQSYFLYTLSSDQVARSLFPVGELEKP 184

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E  L  A K DS  ICF+ + K+ + + +     A  G+I    G+++G+H G
Sbjct: 185 EVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGKHQG 242

Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306
           ++ +T+GQR+GL +          EP FV   DK+  R ++          L+   +   
Sbjct: 243 LMYHTLGQRKGLHIGGQKGGGGNEEPWFVG--DKDLKRNVLIAVQGKDHPLLKSEGLIAS 300

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQAC 365
           +++W+        + D  KC VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ 
Sbjct: 301 QLHWVD----RTPITDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPGQSA 356

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  +      LGGGII 
Sbjct: 357 VFYQGEV----CLGGGIIE 371


>gi|329942704|ref|ZP_08291483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci Cal10]
 gi|313847883|emb|CBY16878.1| tRNA-methyltransferase [Chlamydophila psittaci RD1]
 gi|325507227|gb|ADZ18865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
 gi|328814964|gb|EGF84953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci Cal10]
 gi|328914545|gb|AEB55378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
          Length = 362

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 193/373 (51%), Gaps = 30/373 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVVAMSGGVDSSVVA LLK+   Y V+G+ ++ +    ++   G C   +D  D  RV +
Sbjct: 5   VVVAMSGGVDSSVVAYLLKKMTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVERVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   +   +R  V   F   Y+ G TP P V CNR +KF  L     +LG D L
Sbjct: 62  QLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R       D +R+ + + R  D  +DQSYFL  T Q+ L ++ FPLGDM K  V
Sbjct: 122 ATGHYCRL------DVRRQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKTEV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGI 259
           R +A + GL  A K DS  ICF+ +  +   +++      LEGDI+  + Q I+G H G 
Sbjct: 176 RAIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPN--LEGDIMDYDSQKIVGSHEGA 233

Query: 260 INYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWLGDGL 315
             YTIGQRRGL +   E P +VV   ++KN   ++ G    L   + +  +E+NW    +
Sbjct: 234 HYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF---V 290

Query: 316 FEDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +++    +C  K+  RS  +   +      D V V F      +  GQ   FY  +  
Sbjct: 291 SPESIT---RCSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYDGE-- 345

Query: 374 EARVLGGGIISGS 386
             R LGGG+I  S
Sbjct: 346 --RCLGGGVIEVS 356


>gi|145641507|ref|ZP_01797085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
 gi|145273798|gb|EDK13666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.4-21]
          Length = 362

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 208/378 (55%), Gaps = 32/378 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ 
Sbjct: 2   RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LG
Sbjct: 59  VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G++KK
Sbjct: 119 ADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++G+I+GRH+
Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHD 231

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           G++ +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +
Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQ 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACV 366
           ++W+      + + +  +C VK R  Q  +P  ++  DD +  V F++ +  V  GQ+ V
Sbjct: 290 LHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQSAVTPGQSAV 345

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII+
Sbjct: 346 FYLGEV----CLGGGIIA 359


>gi|325955195|ref|YP_004238855.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922]
 gi|323437813|gb|ADX68277.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922]
          Length = 397

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 196/401 (48%), Gaps = 47/401 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GY+VIG+ ++ +N    +  +  C   +D  DA    +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMRNWNDASVT-LEDECPWIEDSADALLTAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+   V D    ++  ++    + Y  G TP P V CNR +KF   L    +LGAD +
Sbjct: 62  KLNIPFQVIDMSASYKERIVDYMFAEYEQGRTPNPDVLCNREIKFDLFLKTALELGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   ++  +GK    + + +D  +DQSYFL   +Q+QL    FP+G+++K  VR
Sbjct: 122 ATGHYARKNSFIDKNGKEIFQLIKGVDNNKDQSYFLCQLSQEQLSKALFPIGNLEKSEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFV-------------------------------QQGKYFD 230
            +A+ + L  ADK DSQ +CF+                               ++ K+F 
Sbjct: 182 RIAKNLDLVTADKKDSQGLCFIGKVSLPEFLQQQLRPKKGKIIEIPKSSSIYQKEEKHFP 241

Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
            +++     A        +G+I+G H G   +T GQR+GLGV    EPLFV+  D   + 
Sbjct: 242 TIEKKLENQAAAISYKKTDGEIVGEHQGAHFFTRGQRKGLGVGGKAEPLFVLATDVQENI 301

Query: 290 VIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQ 342
           +  G     P    +   I   EI+W+ + +   A+ +G   +   +IR  Q      + 
Sbjct: 302 IYTGQGHDHPGLLKDALFIQADEIHWIREDM---ALKEGESLEVQARIRYRQPLQKATLH 358

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +  +G++V F+  +  +  GQ C +Y  D     ++G G+I
Sbjct: 359 QTKNGLFVAFDTPQSAITEGQFCAWYIED----ELVGSGVI 395


>gi|229819858|ref|YP_002881384.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Beutenbergia cavernae DSM 12333]
 gi|259495825|sp|C5C2D6|MNMA_BEUC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229565771|gb|ACQ79622.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/380 (37%), Positives = 201/380 (52%), Gaps = 28/380 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G+DV+GV + L  +R A  R GS  CC+ +D  DARR
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHDVVGVHMALSRTR-AQHRTGSRGCCSIEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  E F + V+  F S YAAG TP PCV CN  +KFS LL     LG 
Sbjct: 60  AADVLGIPFYVWDLSEEFTDTVVADFLSEYAAGRTPNPCVRCNEHIKFSALLDRGLALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D +ATGHY  +R+  G  G     + R  D  +DQSY L     ++L    FPLG++  K
Sbjct: 120 DAVATGHY--ARIERGAAGVPE--LHRAADAAKDQSYVLAVMGPERLARSLFPLGEVPTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           ++VR  A   GL ++ K DS DICFV  G     + R + G +  G ++  +G+ +G H+
Sbjct: 176 DAVRAEAAARGLSVSAKPDSYDICFVADGDTQGFL-RSHLG-SQPGPVLDTDGREVGAHD 233

Query: 258 GIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL      A G P +VV +   S+ V+VGP E L V  +      WL +
Sbjct: 234 GAYAFTVGQRKGLRLPRPAADGRPRYVVDVRTASNTVVVGPAELLSVRDVLGERPVWLAE 293

Query: 314 GLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFY 368
              E  DA V      V+   +  P  +    +DDG   +     +   G+A+GQ+ V Y
Sbjct: 294 EPHEWTDATVQ-----VRAHGAALPARIRTVTDDDGASHLAARLAEPLRGLAAGQSVVAY 348

Query: 369 TSDSNEARVLGGGIISGSKR 388
               +  RVLG   ++ + R
Sbjct: 349 ----DGTRVLGQATVAATGR 364


>gi|39546313|ref|NP_460204.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991976|ref|ZP_02573075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168264253|ref|ZP_02686226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197263918|ref|ZP_03163992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200391023|ref|ZP_03217634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|24638322|sp|Q8ZPZ4|MNMA_SALTY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|197242173|gb|EDY24793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199603468|gb|EDZ02014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205329792|gb|EDZ16556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205347303|gb|EDZ33934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|267993013|gb|ACY87898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301157775|emb|CBW17268.1| Probable tRNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912222|dbj|BAJ36196.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223852|gb|EFX48915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
          Length = 368

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  +   NDD + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALNDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|313884882|ref|ZP_07818634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619573|gb|EFR31010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 374

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 195/377 (51%), Gaps = 26/377 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV+V MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KKARVIVGMSGGVDSSVAALLLKEAGYDVIGLFMKNWDD---TDENGVCTATEDYKDVAL 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 61  VAEKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY +    V  D      + R +D  +DQ+YFL   +Q QL    FPLG ++K 
Sbjct: 121 DYVAMGHYAQ----VETDADGTVHLLRGLDDNKDQTYFLSQLSQDQLKKSLFPLGHLQKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A + GL  A K DS  +CF+ +  + + +   N      G +V L+GQI+G H G
Sbjct: 177 QVREIAEKAGLATAKKKDSTGVCFIGERNFNEFLS--NYLPNKSGKMVTLDGQIMGDHAG 234

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYL--REINWL 311
           ++ YTIGQR GLG+       EP FVV  D  ++ + VG       ++  YL   +I++ 
Sbjct: 235 LMYYTIGQRHGLGIGGGGESNEPWFVVGKDLETNTLYVGQGYHHPNLYSDYLDASQIHFT 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369
            D      +   F+C  K R  Q  V V V  N+D     V F+     +  GQA VFY 
Sbjct: 295 VD----RDMPQEFECTAKFRYRQKDVKVKVVLNEDQESGRVYFQDPVRAITPGQAVVFY- 349

Query: 370 SDSNEARVLGGGIISGS 386
              +    LGGGII  +
Sbjct: 350 ---DGLECLGGGIIDAA 363


>gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Halomonas elongata DSM 2581]
 gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halomonas elongata DSM 2581]
          Length = 370

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 192/374 (51%), Gaps = 27/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL   G+DV G+ ++ ++    ++    C A +D+ DA  VC 
Sbjct: 7   KVIVGMSGGVDSSVSAQLLLEQGFDVEGLFMKNWDEDDGTE---YCTAKEDLADAEAVCA 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD +
Sbjct: 64  KLGIHLHTANFAAEYWDNVFEHFLAEYQAGRTPNPDILCNREIKFKVFLEYAEMLGADWI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       DG  R  + + +D  +DQSYFL A  +  +    FP+G+++K  VR
Sbjct: 124 ATGHYVRR---AERDGHAR--LLKGLDANKDQSYFLHAVPEAAIARSLFPVGELEKSEVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           D+A   GL  A K DS  ICF+ + ++ D +++     A  G I   +G ++G H G++ 
Sbjct: 179 DIAERHGLATARKKDSTGICFIGERRFRDFLRQYLP--AQPGTIATPDGDVIGEHMGLMY 236

Query: 262 YTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRES-LEVHRIYLREINWLGD 313
           YT+GQR+GLG+         P +V    L++N   V+ G     L    +    ++W+  
Sbjct: 237 YTLGQRQGLGIGGLANYSDAPWYVAGKDLERNVLTVVQGKHHPLLYTDSLATEAMDWVAG 296

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   +G +   K R  QD VP  ++   DDGV V F+  +  V  GQ+ V Y  D 
Sbjct: 297 ---TPPAREG-RYHAKTRYRQDDVPCTMRVAEDDGVEVHFDDPQRAVTPGQSLVLYDGDI 352

Query: 373 NEARVLGGGIISGS 386
                LGGG+I  +
Sbjct: 353 ----CLGGGVIRAT 362


>gi|215486387|ref|YP_002328818.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264459|emb|CAS08822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 368

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|307719725|ref|YP_003875257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6192]
 gi|306533450|gb|ADN02984.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6192]
          Length = 352

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 180/350 (51%), Gaps = 15/350 (4%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +AMSGGVDSSV A LL   G +V+G+T    N+      +G     ++   AR V   + 
Sbjct: 1   MAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDHEGFS---EEARAAREVASHLG 57

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLAT 143
           + H+V +  + + + V+      Y +G TP PCV CNRT+KF  L+   R+ L AD +AT
Sbjct: 58  IEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYAREVLRADGIAT 117

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY  +R+YV  +G     + R     ++QSYFL  T  + L    FPLGD  K+ +R  
Sbjct: 118 GHY--ARIYVDAEGGVH--LMRGKAGTKEQSYFLAQTRPEDLRHAYFPLGDQTKDEIRTY 173

Query: 204 AREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           AR  G+  A++ +SQD+CF   G ++ + ++         G I+   G +LGRH GI  +
Sbjct: 174 ARHHGIPTAERPESQDVCFNTTGLRFGEFLEEFFEEGGEPGPILDERGNVLGRHRGIHVF 233

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-LREINWLGDGLFEDAVV 321
           TIGQRRGLGVA+G P++V  +D   + VIV  RE   +HR+     +NW     F     
Sbjct: 234 TIGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEALLHRVVEAAGVNW-----FAPPPS 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              +   +IR +    P  +    D + V F + +  V  GQ    Y  D
Sbjct: 289 GPVEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQRAVTPGQLLAAYVGD 338


>gi|222032885|emb|CAP75625.1| hypothetical protein LF82_1359 [Escherichia coli LF82]
 gi|312945695|gb|ADR26522.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 368

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 205/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D  ++ +IV      PR  + V  I L +++W
Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPR-LMSVGLIAL-QLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +    F   +    +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY 
Sbjct: 295 VDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY- 349

Query: 370 SDSNEARVLGGGIIS 384
              N    LGGGII 
Sbjct: 350 ---NGEVCLGGGIIE 361


>gi|168239141|ref|ZP_02664199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738212|ref|YP_002114241.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713714|gb|ACF92935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288113|gb|EDY27500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 368

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +NPK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSENPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|62184976|ref|YP_219761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila abortus S26/3]
 gi|73920121|sp|Q5L6D1|MNMA_CHLAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|62148043|emb|CAH63795.1| tRNA-methyltransferase [Chlamydophila abortus S26/3]
          Length = 362

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 191/370 (51%), Gaps = 30/370 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVVAMSGGVDSSVVA LLK+   Y V+G+ ++ +    ++   G C   +D  D  RV +
Sbjct: 5   VVVAMSGGVDSSVVAYLLKKYTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVERVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   +   +R  V   F   Y+ G TP P V CNR +KF  L     +LG D L
Sbjct: 62  QLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R       D K +R+ + R  D  +DQSYFL  T  + L ++ FPLGDM K  V
Sbjct: 122 ATGHYCRL------DVKSQRVGLLRGKDPHKDQSYFLCGTHPESLKNVLFPLGDMTKREV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGI 259
           R +A + GL  A K DS  ICF+ +  +   +++    +  EG+I+  + Q I+G H G 
Sbjct: 176 RSIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNV--EGEIIDYDSQKIVGNHEGA 233

Query: 260 INYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWLGDGL 315
             YTIGQRRGL +   E P +VV   ++KN   ++ G    L   + +  +E+NW    +
Sbjct: 234 HYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF---V 290

Query: 316 FEDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +++    +C  K+  RS  +   +      D V V F      +  GQ   FY  +  
Sbjct: 291 SPESIT---RCSAKVRYRSPDEECEILHTGTQDTVRVRFTSPVKAITPGQTIAFYDGE-- 345

Query: 374 EARVLGGGII 383
             R LGGGII
Sbjct: 346 --RCLGGGII 353


>gi|110641310|ref|YP_669040.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 536]
 gi|191173062|ref|ZP_03034595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli F11]
 gi|218558015|ref|YP_002390928.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli S88]
 gi|218689086|ref|YP_002397298.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ED1a]
 gi|306814017|ref|ZP_07448190.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
 gi|331657197|ref|ZP_08358159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA206]
 gi|123344119|sp|Q0TIU0|MNMA_ECOL5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822319|sp|A1AA27|MNMA_ECOK1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822366|sp|Q1RD20|MNMA_ECOUT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110342902|gb|ABG69139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 536]
 gi|190906607|gb|EDV66213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli F11]
 gi|218364784|emb|CAR02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli S88]
 gi|218426650|emb|CAR07478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ED1a]
 gi|294491197|gb|ADE89953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IHE3034]
 gi|305852654|gb|EFM53102.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
 gi|307627395|gb|ADN71699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146]
 gi|323187621|gb|EFZ72928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli RN587/1]
 gi|323953180|gb|EGB49046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H252]
 gi|323957959|gb|EGB53671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H263]
 gi|331055445|gb|EGI27454.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA206]
          Length = 368

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|170768217|ref|ZP_02902670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia albertii TW07627]
 gi|170122983|gb|EDS91914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia albertii TW07627]
          Length = 368

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--NGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|265767771|ref|ZP_06095303.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|263252443|gb|EEZ23971.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 362

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +  
Sbjct: 7   RVLVGMSGGIDSTATCMMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV D    F+N ++  F   Y  G TP PCV CN   KF  L+    +LG D +
Sbjct: 53  RMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112

Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FPLG+
Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160

Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250
             K++VRD  RE G +   K  +S ++CF+ +G Y D ++     +  E   G  V   G
Sbjct: 161 YTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L    +   + N 
Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNI 279

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +     ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY 
Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYE 335

Query: 370 SDSNEARVLGGGIISGSK 387
                 RVLGG  I+  +
Sbjct: 336 G----RRVLGGAFIASQR 349


>gi|253567176|ref|ZP_04844626.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5]
 gi|251944007|gb|EES84526.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5]
          Length = 362

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +  
Sbjct: 7   RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV D    F+N ++  F   Y  G TP PCV CN   KF  L+    +LG D +
Sbjct: 53  RMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112

Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FPLG+
Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160

Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250
             K++VRD  RE G +   K  +S ++CF+ +G Y D ++     +  E   G  V   G
Sbjct: 161 YTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L    +   + N 
Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNI 279

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +     ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY 
Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYE 335

Query: 370 SDSNEARVLGGGIISGSK 387
                 RVLGG  I+  +
Sbjct: 336 G----RRVLGGAFIASQR 349


>gi|256846579|ref|ZP_05552036.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|294784166|ref|ZP_06749467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
 gi|256718348|gb|EEU31904.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|294488236|gb|EFG35581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
          Length = 343

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 195/365 (53%), Gaps = 28/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC+
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCN 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +SH V +  + F N VI  F   Y++G TP PCV C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGISHEVINIRKDFENIVIKYFLDGYSSGITPSPCVICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY     S ++       + ++     + +DQSY L+  +  +L  L FPL    K 
Sbjct: 113 ATGHYTSVEYSEIF------SKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYTKH 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A ++GL++ DK DSQ +CF ++G Y + +K       ++G+ +  +G ILG+H G
Sbjct: 167 EIREIALKIGLEVYDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEG 225

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ + +P+F+  +   ++ +++G    L    + L  IN+     +E 
Sbjct: 226 YQLYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDIVEL--INYKFSVEYEK 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             ++  +   + R S       + ++ + +Y  + +     A GQ  VF+     +  V+
Sbjct: 284 --LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVV 337

Query: 379 GGGII 383
           GGG I
Sbjct: 338 GGGEI 342


>gi|229822980|ref|ZP_04449050.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271]
 gi|229787793|gb|EEP23907.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271]
          Length = 375

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 198/376 (52%), Gaps = 24/376 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ ++    +   G C A +D  D  +V +
Sbjct: 7   RVVLGMSGGVDSSVAALLLKEQGYEVIGLFMKNWDD---TDENGHCTATEDYQDVVKVAE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y AG TP P V CN+ VKF   L    +LGAD +
Sbjct: 64  KIGIPYYSVNFEKEYWDRVFEYFLREYRAGRTPNPDVMCNKEVKFKAFLDYAMELGADYI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY RS      D      + R +D  +DQ+YFL   +Q QL    FPLG ++K  VR
Sbjct: 124 AMGHYARSE----RDENGVVHLLRGLDNNKDQTYFLSQLSQAQLQKALFPLGHLQKSEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  +CF+ +  + + +   N      G +V L+GQ+ G H G++ 
Sbjct: 180 ALAEEAGLATAKKKDSTGVCFIGERNFNEFLS--NYLPNKPGKMVTLDGQVKGEHMGLMY 237

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+       EP FV+  D+ +  + VG      +L    +   E+++    
Sbjct: 238 YTIGQRQGLGIGGGGTSNEPWFVIGKDQTTQTLYVGQGFHHPNLYSDYLTASEVSFTAPN 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVFYTSDS 372
           L +  V + F+C  K R  Q  + V V+ + D     V F++    +  GQA VFY  D 
Sbjct: 298 LSD--VPEEFRCTAKFRYRQQDIGVTVKLSQDKTQATVMFDEPVRAITPGQAVVFY--DG 353

Query: 373 NEARVLGGGIISGSKR 388
            E   LGGG+I  + +
Sbjct: 354 QEC--LGGGLIDAAYK 367


>gi|315635922|ref|ZP_07891184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315479901|gb|EFU70572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 367

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 204/381 (53%), Gaps = 34/381 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77
           K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ +        KGS C  + +  DA+
Sbjct: 3   KNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEY----GIKGSQCPNRIEFEDAK 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V   I +     D+ + +R+ V   F      G TP P + CN+ +KF+  L+  + +G
Sbjct: 59  KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY +   Y     K   ++  P D  +DQSYFL A + +QL    FPLGD+ K
Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR++AR   L ++DK DS  ICF+   K+ + + +     A+ GDI+  NG+++G+H 
Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231

Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IY 304
           G++ YT+GQR+G+G+             +P FV   D   N+  ++      L + + + 
Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++W    + E+A   G K   ++R   Q      V+ N++ V V F+  +  V  GQ
Sbjct: 292 ASHMHW----VLEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVQFDNPQRAVTLGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y+ D      LGGG IS
Sbjct: 348 SLVLYSGD----YCLGGGFIS 364


>gi|224542883|ref|ZP_03683422.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524213|gb|EEF93318.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM
           15897]
          Length = 376

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 197/375 (52%), Gaps = 27/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           RVV+ +SGGVDS+V A LLK+ GY+VI V ++ ++S   +   G+       C   +D  
Sbjct: 3   RVVLGLSGGVDSAVAAYLLKKQGYEVICVFMRNWDSSLNNDILGNPTNDDDVCPQEKDYQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V   + +     D+ + + + V   F   YA G TP P + CN+ +KF   L   +
Sbjct: 63  DAQAVATHLGLEIRRVDFIKEYWDQVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            + AD +ATGHY R    V  +GK   +M R +D  +DQ+YFL    Q QL +  FP+G+
Sbjct: 123 SIDADYIATGHYARV---VHTEGKES-VMLRGVDNNKDQTYFLCQLNQNQLNNSLFPIGE 178

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           + K  VR +A E+ L +A K DS  ICF+ +  + + +K  N   A  G +V + + +++
Sbjct: 179 LTKPEVRRIAEELDLPVAHKKDSTGICFIGERDFREFLK--NYIPAKSGKMVDIVSKKVI 236

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
           G H GI+ YTIGQR+GLG+   GEP FVV  D + + + +   +S   L  H   + ++N
Sbjct: 237 GDHQGIMYYTIGQRKGLGIGGNGEPWFVVGKDYDKNILYIAQGDSNKWLLSHGALITDVN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W+     E      + C  K R  Q    V +   D+  +YV F+K    V  GQA VFY
Sbjct: 297 WVSKTKPEGE----YDCTAKFRYRQKDNDVSLHFIDETTLYVTFKKPIKAVTPGQAAVFY 352

Query: 369 TSDSNEARVLGGGII 383
             D      LGGG I
Sbjct: 353 DGDV----CLGGGTI 363


>gi|238026255|ref|YP_002910486.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia glumae BGR1]
 gi|237875449|gb|ACR27782.1| TRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia glumae BGR1]
          Length = 393

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 179/379 (47%), Gaps = 32/379 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + + +D  +DQSYFL    Q QL   RFPLG+M K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKALDQTKDQSYFLHRLNQAQLSKTRFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A  +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G
Sbjct: 174 QVREIAARIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMRTPDGRRVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSRDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQA 364
           +      +   DGF C  K R  Q        R   G        + F+  +  V  GQ+
Sbjct: 292 VAG----EPPADGFVCGAKTRYRQADSACSFARAKAGEAGEPRFSLAFDAPQWAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGII 383
            V Y  +      LGGGII
Sbjct: 348 AVLYDGEV----CLGGGII 362


>gi|256383871|gb|ACU78441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384702|gb|ACU79271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455514|gb|ADH21749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 375

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNININNDICPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA+ V D +N+  +  D+ + + + V + F   Y    TP P + CN+ +KF   L+   
Sbjct: 64  DAKAVADKLNIKLHRVDFIKEYWDYVFLYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            QL AD +A GHY +      +   ++  + +  D  +DQ+YFL    Q QL    FPL 
Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTKQYELFKASDTNKDQTYFLSQLNQNQLSKTLFPLA 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ KE VR +A E  L  A+K DS  ICF+ +  + D ++  N   +  G+IV +   ++
Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQ--NYIPSQTGNIVDIKTNKV 238

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306
           LG+H GI+ YTIGQR+G+ ++ M EP +V   DK+  + I+       +  L     ++ 
Sbjct: 239 LGQHIGIMYYTIGQRKGIHLSGMSEPYYVA--DKDVEKKILYVCSTSDQSYLYSTSCFVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           +INW+ D     + V+ FKC  K R  Q+   V V++ DD  Y V FEK    +  GQ  
Sbjct: 297 DINWILDLSKYVSDVNQFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D      LGG +I
Sbjct: 357 VFYLDDI----CLGGAVI 370


>gi|283478712|emb|CAY74628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia pyrifoliae DSM 12163]
          Length = 384

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ G+ V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 22  KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEE---DDDEAYCTAAEDLADAQAVCD 78

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 79  KLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +    D G + R++ R +D  +DQSYFL+    + +    FP+G++ K  V
Sbjct: 139 IATGHYVRRQ----DMGGKSRLL-RGLDGNKDQSYFLYTLGHEHIAQSLFPVGELAKPEV 193

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+H G++
Sbjct: 194 RRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 251

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 252 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 309

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +   +   ++    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ VFY 
Sbjct: 310 VDRSVLSASL----RCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 365

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGG+I 
Sbjct: 366 DEV----CLGGGVIE 376


>gi|330432069|gb|AEC17128.1| tRNA-specific 2-thiouridylase MnmA [Gallibacterium anatis UMN179]
          Length = 384

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVIVGMSGGVDSSVSAYILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R   GDD   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRRR---GDDENAQ--LLRGLDGNKDQSYFLYTLSHKQVGQSLFPVGELEKPVV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI  ++G+++GRH+G++
Sbjct: 198 RQIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEVIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GL +     A  E  +VV  D   + +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLRIGGLKNAGDEAWYVVDKDLEHNELIVAQGHNHPR--LFSKGLIAGQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  VP   +  NDD + V  ++ ++ V  GQ+ VFY 
Sbjct: 314 VD----RQPLKQPLRCTVKTRYRQQDVPCQIIPLNDDLIEVRLDEPQIAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 370 DE----LCLGGGIIE 380


>gi|312866787|ref|ZP_07727000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis F0405]
 gi|311097570|gb|EFQ55801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis F0405]
          Length = 373

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D   V
Sbjct: 6   ETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G+
Sbjct: 179 VRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTIDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+         P FVV  D + + + VG     E+L    ++  ++++ 
Sbjct: 237 MYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLHASQVHFT 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            D + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +
Sbjct: 297 RD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE 352

Query: 372 SNEARVLGGGIISGSKRSDAV 392
                 LGGG+I  + R   V
Sbjct: 353 ----ECLGGGLIDNAYRDGKV 369


>gi|259908739|ref|YP_002649095.1| tRNA-specific 2-thiouridylase MnmA [Erwinia pyrifoliae Ep1/96]
 gi|224964361|emb|CAX55870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia pyrifoliae Ep1/96]
          Length = 369

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 203/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ G+ V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEE---DDDEAYCTAAEDLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +    D G + R++ R +D  +DQSYFL+    + +    FP+G++ K  V
Sbjct: 124 IATGHYVRRQ----DMGGKSRLL-RGLDGNKDQSYFLYTLGHEHIAQSLFPVGELAKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+H G++
Sbjct: 179 RRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +   +   ++    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ VFY 
Sbjct: 295 VDRSVLSASL----RCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGG+I 
Sbjct: 351 DEV----CLGGGVIE 361


>gi|170691401|ref|ZP_02882566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia graminis C4D1M]
 gi|170143606|gb|EDT11769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia graminis C4D1M]
          Length = 381

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 184/373 (49%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRND-DGVY-VDFEKSEVGVASGQACVFYTS 370
               +   +GF C  K R  Q D    F + N  +G++ + F+ ++  V  GQ+ V Y  
Sbjct: 295 ----EPPAEGFACGAKTRYRQADARCTFSRANQREGLFELTFDDAQWAVTPGQSAVLYDG 350

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 351 DV----CLGGGII 359


>gi|315925181|ref|ZP_07921397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621552|gb|EFV01517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 367

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 187/371 (50%), Gaps = 24/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+VV MSGGVDSSV A  LKR G+DVIG+ ++ ++    +   G C A +D  D +RV 
Sbjct: 1   MRIVVGMSGGVDSSVAALQLKRAGHDVIGIFMKNWDE---TDENGVCTATEDYEDVKRVS 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
           + + + +Y  ++E+ +++ V   F + Y  G TP P V CN+ +KF   +    ++ GAD
Sbjct: 58  EALAIPYYTVNFEKEYQDRVFAYFLAEYKRGRTPNPDVLCNKEIKFKAFMDYAMKVAGAD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R      D       M + +D  +DQ+YFL    Q QL    FP+GD+ K  
Sbjct: 118 KLATGHYARIDR---DPASGVFRMLKGIDTGKDQTYFLCQLGQAQLEKTLFPIGDLPKSE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA    L  A K DS  ICF+ +  +   + R     A  G I  L+G + GRHNG+
Sbjct: 175 VRRLAEAHHLITAGKKDSTGICFIGERNFRQFLSRYLP--AKPGLIKDLSGNVKGRHNGL 232

Query: 260 INYTIGQRR---GLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           + YT+GQRR     G   GEP FVV   L +N   V+ G    +L    +    +NW+  
Sbjct: 233 MYYTLGQRRGLGIGGQGTGEPWFVVRKDLSENVLYVVQGAGHPALYSTSLRASAMNWIAG 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +     F C  K R  Q    V V  R+D  + VDFEK +  V  GQ  V Y  + 
Sbjct: 293 ----ETPAASFGCTAKFRYRQPDQAVRVTPRSDTTIAVDFEKLQRAVTPGQEVVLYDGEI 348

Query: 373 NEARVLGGGII 383
                LGG  I
Sbjct: 349 ----CLGGATI 355


>gi|163790364|ref|ZP_02184796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carnobacterium sp. AT7]
 gi|159874435|gb|EDP68507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carnobacterium sp. AT7]
          Length = 374

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 201/374 (53%), Gaps = 26/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A +LK+ GYDV+G+ ++ ++    +   G C A +D  D   V +
Sbjct: 8   RVVVGMSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGMCTATEDYNDVALVAN 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+++ + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 65  QIGIPYYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR
Sbjct: 125 ATGHYAQ----VERDENGVTHMLRGVDNNKDQTYFLNQLSQEQLAKTLFPLGGMQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A K DS  +CF+ +  +   +  +    A  G+++ ++G+I G+H+G++ 
Sbjct: 181 RIAEEAGLATAKKKDSTGVCFIGERDFKKFL--MTYLPAQPGNMMTVDGEIKGQHDGLMY 238

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           YTIGQR+GLG+       +P FVV  D  ++ + VG     E L    +   ++++  + 
Sbjct: 239 YTIGQRQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDLHFTTNE 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372
             E + V  FKC  K R  Q    V V  N+DG    V+F++    +  GQA VFY    
Sbjct: 299 --EKSRV--FKCTAKFRYRQADTGVTVHLNEDGTAATVEFDEPVRAITPGQAVVFY---- 350

Query: 373 NEARVLGGGIISGS 386
           +    LGGG I  +
Sbjct: 351 DGMECLGGGTIDAA 364


>gi|76789009|ref|YP_328095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis A/HAR-13]
 gi|123606993|sp|Q3KM75|MNMA_CHLTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76167539|gb|AAX50547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis A/HAR-13]
          Length = 358

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG + K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGVYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|315634990|ref|ZP_07890271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
 gi|315476252|gb|EFU67003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
          Length = 383

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 206/373 (55%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 25  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQAVCD 81

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGA+ 
Sbjct: 82  KLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGANY 141

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R    DD  +   + R +D  +DQSYFL+  +++Q+    FP+GD++K  V
Sbjct: 142 IATGHYVRRR--GADDNAQ---LLRGLDANKDQSYFLYTLSKKQVGQSLFPVGDIEKPIV 196

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  + G I+GRH+G++
Sbjct: 197 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVEGDIIGRHDGLM 254

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV       +L    +  ++++W+ 
Sbjct: 255 YHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSALLSTGLIAQQLHWVD 314

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  + +  +C VK R  Q  VP  ++  +D+ + V F++ ++ V  GQ+ VFY  +
Sbjct: 315 ----RQPIREPLRCTVKTRYRQTDVPCTIEPIDDESIKVIFDEPQIAVTPGQSAVFYLDE 370

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 371 V----CLGGGIIE 379


>gi|255311088|ref|ZP_05353658.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276]
          Length = 358

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++ N   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMENNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|223041989|ref|ZP_03612173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor 202]
 gi|223017246|gb|EEF15674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor 202]
          Length = 389

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 208/372 (55%), Gaps = 28/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ V D
Sbjct: 31  KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQAVAD 87

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 88  KLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 147

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GDD   +  + R +D  +DQSYFL+A +++Q+    FP+G+++K  V
Sbjct: 148 IATGHYVRRS---GDDENAQ--LLRGLDTNKDQSYFLYALSKKQVGQSLFPVGEIEKPIV 202

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++G+++GRH+G++
Sbjct: 203 RKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIRTVDGKVVGRHDGLM 260

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GLG+        EP +VV  D  ++ ++V       +L    +   ++NW+ 
Sbjct: 261 YHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHDNSALLSTGLIASQLNWVD 320

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  + +  +C VK R  Q+ +P  +Q  DD  + V F++ ++ V  GQ+ VFY  +
Sbjct: 321 ----LQPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFDEPQIAVTPGQSAVFYLGE 376

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 377 V----CLGGGII 384


>gi|253828114|ref|ZP_04870999.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511520|gb|EES90179.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Helicobacter canadensis MIT 98-5491]
          Length = 349

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 38/372 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79
           +V++ MSGGVDSS  A LL++ GY V G+ L+L++  +            D Y  + ++ 
Sbjct: 3   KVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEK----------HDYYTRNIQKC 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++N+ + + D  E F+ +V   F  SY  G TP PC  CN  VKF+    + + LG +
Sbjct: 53  AESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCE 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +     +G+    + + +D  +DQSYFLF    + +  + FPLGD KKE 
Sbjct: 113 FVATGHYAQIK-----NGR----IAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEE 163

Query: 200 VRDLA-REMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           ++ +A +E+     +    DSQ+ICFV+   Y DV+K+ +     +GD++   G  +G H
Sbjct: 164 IKPIALKELPWLGTLETYKDSQEICFVENS-YIDVLKK-HHKTEQKGDVLDSKGNKIGTH 221

Query: 257 NGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +     P +V+ ++   + +I G +E L  +++    ++   +  
Sbjct: 222 KGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKVQALNLSLPKEWF 281

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV----QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            ++ V+D   C VKIR     +P  +      N D +  + ++S  GVA+GQA V Y   
Sbjct: 282 QDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGVANGQALVLY--- 335

Query: 372 SNEARVLGGGII 383
            N   VLGGG I
Sbjct: 336 -NGNEVLGGGFI 346


>gi|325266287|ref|ZP_08132966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kingella denitrificans ATCC 33394]
 gi|324982249|gb|EGC17882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kingella denitrificans ATCC 33394]
          Length = 389

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 188/374 (50%), Gaps = 22/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+  +VV +SGGVDSSV AALLKR G +V GV +Q +    + +    C   QD  DA  
Sbjct: 29  KNQNIVVGLSGGVDSSVTAALLKRGGANVRGVFMQNWEDDDSDE---YCSIKQDSLDAMA 85

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L      GA
Sbjct: 86  VADIVGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVAEGA 145

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R  +  G        + R  D  +DQSYFL+     QL    FPLG ++K 
Sbjct: 146 EAIATGHYARKEVRDG-----VHYLLRGADGNKDQSYFLYRLQPYQLQKALFPLGHLEKP 200

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA E GL  A K DS  ICF+ +  + + +++        G++V   G+I+G H G
Sbjct: 201 EVRRLAVEFGLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 258

Query: 259 IINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDG 314
           +  YTIGQR+GLG+   GEP FV    L KN   V+ G   E L    + + +++W    
Sbjct: 259 LTFYTIGQRKGLGIGGAGEPWFVAGKNLPKNELLVVQGHDHELLYTRSLQMNQLSWT--- 315

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           L E      + C  + R + D        +DD   + F++ +  V  GQ+ V Y  +   
Sbjct: 316 LPEKPREGRYTCKTRYRMT-DAACTLQYLSDDTAELQFDEPQWAVTHGQSAVLYDGEV-- 372

Query: 375 ARVLGGGIISGSKR 388
              LGGGII+ + +
Sbjct: 373 --CLGGGIITATDK 384


>gi|150003570|ref|YP_001298314.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
 gi|205810521|sp|A6KZ28|MNMA2_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|149931994|gb|ABR38692.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus ATCC 8482]
          Length = 351

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 184/363 (50%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGG DSSV A LL+  GY+V G+T + Y     +         + + DAR +C+
Sbjct: 9   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDT---------EYLEDARALCE 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ H  +D  + FR  +I  F + Y AG TP+PC  CN  +K+  L  ++ ++G    
Sbjct: 60  RLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYHF 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R   G        +   +D ++DQS+FL+   Q+ L  +  P+G++ K  VR
Sbjct: 120 ATGHYVRRRFINGCYH-----ITTGVDPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174

Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E G L  A K DS  +CF        + K +  G  L G      G  + RH G  
Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E +     L  +  
Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITNPALLLNK- 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D     ++ R   +   V +Q  D+ ++V   +    +A GQA  FY  D     VLGG
Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347

Query: 381 GII 383
           GII
Sbjct: 348 GII 350


>gi|19705225|ref|NP_602720.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81479885|sp|Q8R5Z5|MNMA2_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|19713176|gb|AAL94019.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 343

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 192/362 (53%), Gaps = 22/362 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIG+TL  +    +          +D+ D ++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGITLNQHLEENS----------KDIEDTKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PC+ C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGIIHEVVNIRKDFENIVIKYFLEGYNSGKTPSPCIICDDEIKFKILFDIADKYNAEYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL D  K+ +R
Sbjct: 113 ATGHYTSVEY---SEVFSKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L++ DK DSQ +CF ++G Y + +K       + G+ +  NG ILG+H G   
Sbjct: 170 EIALKIDLEVHDKKDSQGVCFAKEG-YKEFLKENLRDEIVRGNFIDKNGNILGQHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + +P+F+  +   ++ +++G    L + ++ L  IN      +E   +
Sbjct: 229 YTIGQRRGLGINLSKPVFITEIKAQTNDIVLGEFSELFIDKVEL--INSKFSVEYEK--L 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +  +   + R S       + ++ + +Y  + +     A GQ  VF+     +  V+GGG
Sbjct: 285 ENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVVGGG 340

Query: 382 II 383
            I
Sbjct: 341 EI 342


>gi|332173678|gb|AEE22932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 377

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 33/392 (8%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L++ +L  N +  +V+V MSGGVDSSV A +L + GY V G+ ++ +      +    C 
Sbjct: 7   LSAAELASNSQK-KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CA 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A +D+ DA+ V D + +  +  ++   + + V   F   Y +G TP P + CN+ +KF  
Sbjct: 63  AAEDLKDAQAVADKLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKA 122

Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L     +L AD +ATGHY+R R     DG  +  M R MD  +DQSYFL+   +Q +  
Sbjct: 123 FLEFAAEELEADYIATGHYVRRREV---DGHWQ--MLRGMDDNKDQSYFLYTLGEQHVGQ 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+GD++K  VR++A+E GL   DK DS  ICF+ + K+ D + +     A  G I  
Sbjct: 178 TLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIET 235

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGE----PLFVVYLDKNSSRVIVG-----PRES 297
             GQ +G+H G++ +T+GQR+GL +  M E    P +VV  D   + +IVG     PR  
Sbjct: 236 PEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPR-- 293

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L    +   +++W+ D +     +   KC VK R  Q+ +P  +  + DG   V F++ +
Sbjct: 294 LFSKGLVANQLHWV-DRVGPTCAI---KCSVKTRYRQEDIPCSLTLDSDGSARVIFDQPQ 349

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
             V  GQ+ VFY ++      LGGGII    R
Sbjct: 350 KAVTPGQSAVFYLNEV----CLGGGIIESYIR 377


>gi|221633062|ref|YP_002522287.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159]
 gi|221155991|gb|ACM05118.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159]
          Length = 370

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/384 (35%), Positives = 195/384 (50%), Gaps = 29/384 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA+SGGVDS+V A LLK+ G++ +G+ L+L+++  A    G CC      DAR V  
Sbjct: 11  RVLVALSGGVDSAVTAYLLKQAGWEPVGIHLRLFDA--APGLDGVCCGDVAAADARAVAA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +V D    F   V+ P    YA   TP PCV CN  V+   LL +   LG   +
Sbjct: 69  QIGIPFFVRDLRPEFEQEVVAPTVEEYARARTPNPCVFCNHRVRIPALLELAEALGIRFV 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R    V   G  R    R  D +RDQSY L+  T  QL  L FPLG+  K +VR
Sbjct: 129 ATGHYVRK---VATPGGWRLAEAR--DAQRDQSYVLYRLTADQLERLLFPLGEYDKPTVR 183

Query: 202 DLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A+E GL +A K  S D+CF +  G    +V +     +  G ++    +++G H GI 
Sbjct: 184 AIAQEAGLFVARKPSSVDLCFAKTYGGIGRLVSQRRPETSRPGPLLDERDEVVGTHPGIA 243

Query: 261 NYTIGQRRGLGVAMGEP--LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             TIGQRRGL  A   P   +V  +D  ++ V V PRE     RI  R +  L D ++ D
Sbjct: 244 FVTIGQRRGLEWARPTPERRYVAEIDPATAVVRVAPRE-----RILTRAVR-LADPVWHD 297

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            V        ++R     +P  +    +G +V F++    +A GQ+ V Y  D    RV+
Sbjct: 298 PV---LTADARLRYQGPRIPARI----EGDWVIFDEPAPPLAPGQSVVLYVGD----RVV 346

Query: 379 GGGIISGSKRSDAVEESLLSVIGD 402
           GGGI     R++  +ES +  +  
Sbjct: 347 GGGIAEEVVRTE--QESPIPALAQ 368


>gi|205822040|sp|A9MG80|MNMA_SALAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 206/383 (53%), Gaps = 34/383 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R    V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRR---VDINGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPR--LMSSG 286

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           +  ++++W+    F   +     C VK R  Q  +P  +   +DD + V F++    V  
Sbjct: 287 LIAQQLHWVDREPFTGTL----SCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTP 342

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY+ +      LGGGII 
Sbjct: 343 GQSAVFYSGEV----CLGGGIIE 361


>gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ultunensis DSM 16047]
          Length = 375

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 191/377 (50%), Gaps = 23/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D ++V D
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKKVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD +
Sbjct: 65  KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY ++   V D      +M RP D  +DQ+YFL   +Q Q+  + FPL ++ K  VR
Sbjct: 125 AMGHYAKT---VKDKNGIVHMM-RPKDGNKDQTYFLSQLSQDQIQKVIFPLANLTKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H G++ 
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           YTIGQR+GLG+       +P FVV  D   + +IV   +  +   +Y   +       F 
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASHLKASDMSFFT 296

Query: 318 DAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 F+  C  K R  Q  + V V+ +  D+   V F++    V  GQA V Y    N
Sbjct: 297 GQPDHDFEMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLY----N 352

Query: 374 EARVLGGGIISGSKRSD 390
               LGGG I  + + D
Sbjct: 353 GEECLGGGNIDAAYQED 369


>gi|240948512|ref|ZP_04752885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor NM305]
 gi|240297020|gb|EER47591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor NM305]
          Length = 389

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 208/372 (55%), Gaps = 28/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ V D
Sbjct: 31  KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQAVAD 87

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 88  KLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 147

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GDD   +  + R +D  +DQSYFL+A +++Q+    FP+G+++K  V
Sbjct: 148 IATGHYVRRS---GDDENAQ--LLRGLDTNKDQSYFLYALSKKQVGQSLFPVGEIEKPIV 202

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++G+++GRH+G++
Sbjct: 203 RKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIRTVDGKVVGRHDGLM 260

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GLG+        EP +VV  D  ++ ++V       +L    +   ++NW+ 
Sbjct: 261 YHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHDNSALLSTGLIASQLNWVD 320

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  + +  +C VK R  Q+ +P  +Q  DD  + V F++ ++ V  GQ+ VFY  +
Sbjct: 321 ----LQPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFDEPQIAVTPGQSAVFYLDE 376

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 377 V----CLGGGII 384


>gi|148543839|ref|YP_001271209.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri DSM
           20016]
 gi|184153240|ref|YP_001841581.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri JCM 1112]
 gi|227364743|ref|ZP_03848792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM2-3]
 gi|325682630|ref|ZP_08162147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM4-1A]
 gi|166991123|sp|A5VJ48|MNMA_LACRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229486414|sp|B2G6L9|MNMA_LACRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148530873|gb|ABQ82872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri DSM 20016]
 gi|183224584|dbj|BAG25101.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Lactobacillus reuteri JCM 1112]
 gi|227070202|gb|EEI08576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM2-3]
 gi|324978469|gb|EGC15419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM4-1A]
          Length = 377

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 201/383 (52%), Gaps = 33/383 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAS 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +    D+  R  +M R  D  +DQ+YFL     +QL  + FPL    K  +R
Sbjct: 125 ATGHYADVKR---DENGRMHLM-RAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A E GL  ADK DS  ICF+ + G + + + +     A  G++  L+G+++G+H G++
Sbjct: 181 KIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQHMGLM 238

Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
            YTIGQRRGLG+       EP FV+  D   + + VG   E+  ++  +L   +I+W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDIHWVDD 298

Query: 314 GLFEDAVVD----GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
                 VV      F C  K R  Q  V V V  +DD   V V+F+     +  GQA VF
Sbjct: 299 ------VVSRYGRDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRSD 390
           Y  +      LG  II  +   D
Sbjct: 353 YDGE----ECLGSAIIDRAYSHD 371


>gi|325844820|ref|ZP_08168272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sp. HGF1]
 gi|325489007|gb|EGC91395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sp. HGF1]
          Length = 377

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 28/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQ 71
           K  +V+V MSGGVDSSV A LLK  GY+V GV ++ ++S   +   G+       C    
Sbjct: 5   KGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQEV 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA+ V D + +  +  D+ + + + V + F   Y AG TP P + CN+ VKF   L 
Sbjct: 65  DYNDAKAVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAFLD 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LG D +A GHY R    V  +G+ +  M R +D  +DQ+YFL   TQ QL    FP
Sbjct: 125 YAMNLGCDYIAMGHYAR----VSHEGEVQ--MLRGLDNNKDQTYFLSQLTQAQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A ++ L  A K DS  +CF+ +  +   ++  N   A  G +  L G+
Sbjct: 179 VGELQKSEVRAIAEKLDLATAKKKDSTGVCFIGERNFTQFLQ--NYLPAQPGQMRTLEGE 236

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           ++G H G++ YTIGQR+GLG+   G+  FV+  +   + ++VG     E +      +  
Sbjct: 237 VVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALVSN 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
           +NW+    F    V  ++C  K R  Q  +PV     +D+ + V   +    V  GQA V
Sbjct: 297 VNWIPSERF----VGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQAAV 352

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG I 
Sbjct: 353 FYLDEV----CLGGGRIE 366


>gi|120603213|ref|YP_967613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris DP4]
 gi|205816916|sp|A1VFH0|MNMA_DESVV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120563442|gb|ABM29186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris DP4]
          Length = 346

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 178/368 (48%), Gaps = 26/368 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRV 79
           M + VAMSGG DS     LLK  G  V G+  +                G D V D R +
Sbjct: 1   MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-----------TGHDPVPDIRAM 49

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + V  +V D  E F   V+ PF   Y  G TP PC  CN T+KF  L      +GA 
Sbjct: 50  CDRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAV 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R    +    +   ++ R +D  +DQSYFL      +L    FPLG+ +KE+
Sbjct: 110 HLATGHYAR----LLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEA 165

Query: 200 VR-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           VR +LAR   +     S+SQ+ICFV    Y   +K     +   G IV   G+ +G H G
Sbjct: 166 VRGELARR-SIVPPLPSESQEICFVPDDDYRAFLKNRRVRLPGPGPIVTTRGRKIGSHAG 224

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQR+GLG+A  EPL+VV  D  ++ ++VG RE+L        E+N L    +ED
Sbjct: 225 LWQYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLLVP--YED 282

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              +     V+IR  Q P+   V   D  +Y  F + +   A GQ    Y     E  VL
Sbjct: 283 WPAE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVY---DMEHHVL 336

Query: 379 GGGIISGS 386
           GGG+I G 
Sbjct: 337 GGGVILGP 344


>gi|50084409|ref|YP_045919.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. ADP1]
 gi|73919892|sp|Q6FCW2|MNMA_ACIAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49530385|emb|CAG68097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ADP1]
          Length = 377

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 202/374 (54%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   +     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFIDHAMTLGADFI 120

Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R    + +  G+    + R +D  +DQSYFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYTRRGESMQNSRGESYAPLLRGVDNNKDQSYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RKIAEKLDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238

Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT          GL  A     FV++ D  ++R+++G       ++   ++ ++I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDLENNRLVIGQGHEHPLMQSTTLWSQDIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFYT 369
               +D    GF+C  K R  Q      + R++D   GV V+F++ +  V  GQ+ VFYT
Sbjct: 299 GE--QDIPASGFRCTAKTRYRQPDQACTIYRDEDRNNGVRVEFDEPQRAVTPGQSVVFYT 356

Query: 370 SDSNEARVLGGGII 383
           ++      LGGG+I
Sbjct: 357 NEI----CLGGGVI 366


>gi|310767364|gb|ADP12314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia sp. Ejp617]
          Length = 369

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ G+ V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEE---DDDEAYCTAAEDLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +    D G + R++ R +D  +DQSYFL+    + +    FP+G++ K  V
Sbjct: 124 IATGHYVRRQ----DVGGKSRLL-RGLDGNKDQSYFLYTLGHEHIAQSLFPVGELAKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+H G++
Sbjct: 179 RRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +   +    +    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ VFY 
Sbjct: 295 VDRSVLSAPL----RCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGG+I 
Sbjct: 351 DEV----CLGGGVIE 361


>gi|167618733|ref|ZP_02387364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis Bt4]
          Length = 386

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 186/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-------FEKSEVGVASGQACV 366
               +   DG +C  K R  Q   P        G           F++ +  V  GQ+ V
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQSAV 350

Query: 367 FYTSDSNEARVLGGGII--SGSKRSDAVEESLLSVIGD 402
            Y  D      LGGGII  + + R DA   S  S + +
Sbjct: 351 LYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384


>gi|169632892|ref|YP_001706628.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii SDF]
 gi|229486328|sp|B0VUD6|MNMA_ACIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169151684|emb|CAP00474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii]
          Length = 377

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238

Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGMKGASEGAWFVLHKDVTNNRLVVGQGHDHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
               ++   +G +C  K R  Q      VF+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|307553134|gb|ADN45909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ABU 83972]
          Length = 368

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 203/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+   + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|256832943|ref|YP_003161670.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Jonesia denitrificans DSM 20603]
 gi|256686474|gb|ACV09367.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Jonesia denitrificans DSM 20603]
          Length = 423

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 142/417 (34%), Positives = 202/417 (48%), Gaps = 57/417 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AAL    G+DV+GV + L  +R    R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVEAGHDVVGVHMALSRNRN-QFRSGSRGCCSIEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + +YV+D  E+F + V+  F S Y AG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADILGIPYYVWDLSEKFEDTVVADFISEYEAGRTPNPCVRCNEHIKFEALLDKAMALGF 119

Query: 139 DVLATGHYI----RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           D +ATGHY     R    V       R + R  +  +DQSY L      +L +  FPLG 
Sbjct: 120 DAVATGHYAQIIDRDTTDVHGQPTVIRELHRSPNDAKDQSYVLAVMGPDRLKNAIFPLGG 179

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQI 252
              K+ VR  A   GL +++K DS DICFV  G     ++ R+    +  G+++  +G +
Sbjct: 180 YASKDEVRAEAERRGLSVSNKPDSYDICFVADGDTKGFLRDRLG---SRPGEVLDTDGNV 236

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G H+G   YT+GQR+GL +      G+P +V+ +    + VIVGP E L V+RI   + 
Sbjct: 237 VGTHDGAYAYTVGQRKGLALGRPAEDGKPRYVLGVSTRDNTVIVGPSELLSVNRIVGDKA 296

Query: 309 NWLGDGLFEDAVV-----DGFKCFVKIRSSQDPVP------------------------- 338
            W    +  DA +     D F    ++R+    +P                         
Sbjct: 297 VWFATDILTDASLTTEGSDWFAIEGQVRAHGAALPGRARIVPLDRARDLMPAGREELAAE 356

Query: 339 -VFVQRNDDG------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
              V+  D G      V V+ +    GVA+GQ+ V Y       RV+G   +  S R
Sbjct: 357 CTRVEGADPGHDHTALVEVELQSPLRGVAAGQSIVLYRG----TRVIGQATVVASDR 409


>gi|76810425|ref|YP_334767.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
           1710b]
 gi|126451955|ref|YP_001067626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106a]
 gi|242317503|ref|ZP_04816519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106b]
 gi|254191526|ref|ZP_04898029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194966|ref|ZP_04901396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei S13]
 gi|254261623|ref|ZP_04952677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1710a]
 gi|254299216|ref|ZP_04966666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 406e]
 gi|123598034|sp|Q3JNT6|MNMA_BURP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811476|sp|A3NZ55|MNMA_BURP0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76579878|gb|ABA49353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1710b]
 gi|126225597|gb|ABN89137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106a]
 gi|157808903|gb|EDO86073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 406e]
 gi|157939197|gb|EDO94867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169651715|gb|EDS84408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei S13]
 gi|242140742|gb|EES27144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106b]
 gi|254220312|gb|EET09696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1710a]
          Length = 383

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 181/377 (48%), Gaps = 30/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G+H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y 
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350

Query: 370 SDSNEARVLGGGIISGS 386
            D      LGGGII  +
Sbjct: 351 GDV----CLGGGIIESA 363


>gi|329963139|ref|ZP_08300919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328529180|gb|EGF56110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 359

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 195/383 (50%), Gaps = 47/383 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  + RV+V MSGG+DS+    +LK  GY+++G+T+ ++  +                DA
Sbjct: 2   NKSEKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDKPV--------------DA 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             + +++ + HY+ D  + FR  ++  F   Y  G TP PCV CN   KF  L+    +L
Sbjct: 48  CELAESMGIGHYIADERDAFRRIIVQDFIDEYRQGRTPNPCVMCNPMFKFRILMEWADKL 107

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           G   +ATGHY R      ++Y+  GDD K            +DQSYFL+   Q  L    
Sbjct: 108 GCKYIATGHYTRLEEIDGKVYIIAGDDDK------------KDQSYFLWRLGQDVLKRCI 155

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K  VR   R+ G  + A++ +S ++CF+ +G Y D +K  +  I  E   G  
Sbjct: 156 FPLGTYTKPQVRGYLRDKGYAVKAEEGESMEVCFI-KGDYRDFLKEHSPEIDREIGPGWF 214

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   + L
Sbjct: 215 VNSEGVKLGEHKGYPYYTIGQRKGLEIALGKPAYVLKINPLKNTVMLGDAEQLKTRHM-L 273

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
            E   L D   E  V +  +  V+IR    P+P  V+R +DG + V F+     +A GQ+
Sbjct: 274 VEQEKLTD---EREVFESKELTVRIRYRSKPIPCTVRRLEDGRLLVCFQVEASAIAPGQS 330

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            VFY       RV+GG  I+  +
Sbjct: 331 AVFYIG----RRVVGGSFIASQR 349


>gi|293374251|ref|ZP_06620579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sanguinis PC909]
 gi|292647084|gb|EFF65066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sanguinis PC909]
          Length = 377

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 28/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQ 71
           K  +V+V MSGGVDSSV A LLK  GY+V GV ++ ++S   +   G+       C    
Sbjct: 5   KGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQEV 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA+ V D + +  +  D+ + + + V + F   Y AG TP P + CN+ VKF   L 
Sbjct: 65  DYNDAKTVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAFLD 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LG D +A GHY R    V  +G+ +  M R +D  +DQ+YFL   TQ QL    FP
Sbjct: 125 YAMNLGCDYIAMGHYAR----VSHEGEVQ--MLRGLDNNKDQTYFLSQLTQAQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A ++ L  A K DS  +CF+ +  +   ++  N   A  G +  L G+
Sbjct: 179 VGELQKSEVRAIAAKLDLATAKKKDSTGVCFIGERNFTQFLQ--NYLPAQPGQMRTLEGE 236

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           ++G H G++ YTIGQR+GLG+   G+  FV+  +   + ++VG     E +      +  
Sbjct: 237 VVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALVSN 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
           +NW+    F    V  ++C  K R  Q  +PV     +D+ + V   +    V  GQA V
Sbjct: 297 VNWIPSERF----VGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQAAV 352

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG I 
Sbjct: 353 FYLDEV----CLGGGRIE 366


>gi|255011782|ref|ZP_05283908.1| putative tRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 364

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 49/387 (12%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++    + RV+V MSGG+DS+    +L+  GY+++GVT++++              G + 
Sbjct: 1   MNMKESNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEP 46

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +   + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+   
Sbjct: 47  QDARELAVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWA 106

Query: 134 RQLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            +LG D +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L 
Sbjct: 107 DKLGCDWIATGHYSRLEERNGYIYIVAGDDEK------------KDQSYFLWRLGQDVLR 154

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVK----RINAGIAL 241
              FPLG+  K++VRD  RE G +   K  +S ++CF+ +G Y D ++     ++A I  
Sbjct: 155 RCIFPLGNYTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIG- 212

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
            G  V   G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+  
Sbjct: 213 PGWFVSSEGVKLGQHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAG 272

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
            +   + N +     ED +    +  V+IR    P+P  V+R +DG + V F      +A
Sbjct: 273 YMVAEQDNIVD----EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIA 328

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RV+GG  I+  +
Sbjct: 329 PGQSAVFYDG----RRVIGGAFIASQR 351


>gi|221202286|ref|ZP_03575320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2M]
 gi|221209100|ref|ZP_03582094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2]
 gi|221171004|gb|EEE03457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2]
 gi|221177860|gb|EEE10273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2M]
          Length = 381

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   +GF C  K R  Q D    F +   +   + F  ++  V  GQ+ V Y  + 
Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYDGEV 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|149926700|ref|ZP_01914960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Limnobacter sp. MED105]
 gi|149824629|gb|EDM83845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Limnobacter sp. MED105]
          Length = 358

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 190/370 (51%), Gaps = 26/370 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+ MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C + QD  DA  V D 
Sbjct: 5   VVIGMSGGVDSSVSAWLLKQQGYNVIGLFMKNWEDDDDSEY---CSSRQDWLDAASVADV 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V     ++   +++ V   F S Y+AG TP P + CN  +KF   L     LGAD +A
Sbjct: 62  VGVDIEAVNFASEYKDRVFSVFLSEYSAGRTPNPDILCNSEIKFKAFLDHAYSLGADYIA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R   G+       + + +D  +DQSYFL    Q QL    FPLG+++K  VR 
Sbjct: 122 TGHYARVRELNGE-----FQLLKAVDHSKDQSYFLHRLNQAQLSKTLFPLGEIQKTEVRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A E+GL  A K DS  ICF+ +  + + + R        G I++  GQ +G H G+  Y
Sbjct: 177 IALELGLANATKKDSTGICFIGERPFREFLNRYLP--TAPGPILNDEGQQIGEHVGLSFY 234

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDG 314
           T+GQR+G+G+       GEP FV   D +N++  +V   +   +H+  L   + +++   
Sbjct: 235 TLGQRKGIGIGGQKEGNGEPWFVARKDLQNNTLYVVQGHDHPWLHQKVLVAEQAHYISG- 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A  D      K R  Q+      +  + G  ++F +S+  V  GQ+ V Y  D   
Sbjct: 294 ---HAPSDPQHMACKARYRQEDSSCDFKLTEQGFELNFAESQFAVTPGQSAVLYRGDV-- 348

Query: 375 ARVLGGGIIS 384
              LGGG+I+
Sbjct: 349 --CLGGGVIA 356


>gi|260582389|ref|ZP_05850181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae NT127]
 gi|260094540|gb|EEW78436.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae NT127]
          Length = 418

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 208/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 61  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI  ++G+I+GRH+G++
Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEIIGRHDGLM 290

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 349 VD----REPIRELLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 405 CEV----CLGGGIIA 415


>gi|325577519|ref|ZP_08147881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160623|gb|EGC72747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 384

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 206/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGA  
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGAHY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ + K+ D + R     A  GDI  ++G+I+GRH+G++
Sbjct: 198 RAIAEELGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRELVRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 370 GEI----CLGGGIIE 380


>gi|254881202|ref|ZP_05253912.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA]
 gi|319640212|ref|ZP_07994938.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A]
 gi|254833995|gb|EET14304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA]
 gi|317388199|gb|EFV69052.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A]
          Length = 351

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 183/363 (50%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGG DSSV A LL+  GY+V G+T + Y     +         + + DAR +C+
Sbjct: 9   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDT---------EYLEDARALCE 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ H  +D  + FR  +I  F + Y AG TP+PC  CN  +K+  L  ++ ++G    
Sbjct: 60  RLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYHF 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R   G        +    D ++DQS+FL+   Q+ L  +  P+G++ K  VR
Sbjct: 120 ATGHYVRRRFINGCYH-----ITTGADSDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174

Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E G L  A K DS  +CF        + K +  G  L G      G  + RH G  
Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E +     L  +  
Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITNPALLLNK- 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D     ++ R   +   V +Q  D+ ++V   +    +A GQA  FY  D     VLGG
Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347

Query: 381 GII 383
           GII
Sbjct: 348 GII 350


>gi|209695634|ref|YP_002263563.1| tRNA-specific 2-thiouridylase MnmA [Aliivibrio salmonicida LFI1238]
 gi|208009586|emb|CAQ79882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 195/377 (51%), Gaps = 27/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124

Query: 141 LATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +A GHY+R      +D     +  M R +D  +DQSYFL+  + +Q+    FP+GD++K 
Sbjct: 125 IAMGHYVRRTFPTAEDIANGAKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVGDLEKP 184

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E  L  A K DS  ICF+ + K+ + + +     A  G+I    G+++G+H G
Sbjct: 185 EVRRIAQEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGQHQG 242

Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREI 308
           ++ +T+GQR+GL +          +P FV   D   + +I         L+   +   ++
Sbjct: 243 LMYHTLGQRKGLHIGGSKGGGGNEDPWFVGEKDLKRNVLIAVQGHDHPLLKSQGLLASQL 302

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+       A+     C VK R  Q  +P   +  +D+ + V F + ++ V  GQ+ VF
Sbjct: 303 DWVD----RTAIKAPLSCTVKTRYRQTDIPCTIIPIDDENIKVIFNEPQIAVTPGQSAVF 358

Query: 368 YTSDSNEARVLGGGIIS 384
           Y+ +      LGGGII 
Sbjct: 359 YSGEI----CLGGGIIE 371


>gi|86147101|ref|ZP_01065418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. MED222]
 gi|218710012|ref|YP_002417633.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus LGP32]
 gi|85835166|gb|EAQ53307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. MED222]
 gi|218323031|emb|CAV19208.1| Probable tRNA(5-methylaminomethyl-2-thiouridylate)-
           methyltransferase [Vibrio splendidus LGP32]
          Length = 378

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 27/386 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     + +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D
Sbjct: 3   DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             + L AD +A GHY+R      +  D   +  M R +D  +DQSYFL+  +  Q+    
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGAKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G+I    
Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LE 299
           GQ++G+H G++ +T+GQR+GL +          EP FV   D K +  + V  ++   L+
Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLK 297

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVG 358
              +   +++W+        + +   C VK R  Q  +P   +  +D+ + V F++ ++ 
Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           V  GQ+ VFY  +      LGGGII 
Sbjct: 354 VTPGQSAVFYLDNV----CLGGGIIE 375


>gi|309972705|gb|ADO95906.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Haemophilus influenzae R2846]
          Length = 413

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 56  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 112

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 113 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 172

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 173 IATGHYVRR---AGDNENAK--LLRGLDTNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 227

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  +N +I+GRH+G++
Sbjct: 228 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVNDEIIGRHDGLM 285

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 286 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 343

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 344 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 399

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 400 GEV----CLGGGIIA 410


>gi|296329079|ref|ZP_06871584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153798|gb|EFG94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 343

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 189/362 (52%), Gaps = 22/362 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +               +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENL----------KDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y++G+TP PCV C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGIIHEVVNIRKDFENIVIKYFLDGYSSGKTPSPCVICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL    K+ +R
Sbjct: 113 ATGHYTSVEY---SEVFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYSKQGIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL++ DK DSQ +CF ++G Y + +K       + G+ V  +G ILG+H G   
Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGQHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+   +P+F+  +   ++ +++G    L   ++ L    +      E   +
Sbjct: 229 YTIGQRRGLGINFSKPVFITEIKAQTNEIVLGEFSELFTDKVELINCKF----SVEYKKI 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +  +   + R S       + ++ + +Y  + +     + GQ  VF+     +  V+GGG
Sbjct: 285 EKLELLARPRFSSTGFYGKLMKDKEKIYFKYNEENAHNSKGQHIVFFY----DGFVVGGG 340

Query: 382 II 383
            I
Sbjct: 341 EI 342


>gi|83719254|ref|YP_441804.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis
           E264]
 gi|257137971|ref|ZP_05586233.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis
           E264]
 gi|123537507|sp|Q2SZ45|MNMA_BURTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83653079|gb|ABC37142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis E264]
          Length = 386

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 186/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-------FEKSEVGVASGQACV 366
               +   DG +C  K R  Q   P        G           F++ +  V  GQ+ V
Sbjct: 295 ----EPPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQSAV 350

Query: 367 FYTSDSNEARVLGGGII--SGSKRSDAVEESLLSVIGD 402
            Y  D      LGGGII  + + R DA   S  S + +
Sbjct: 351 LYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384


>gi|313673847|ref|YP_004051958.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940603|gb|ADR19795.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 343

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 191/366 (52%), Gaps = 29/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVVAMSGGVDSSV A +LK+ GYDV+GVT++++ +++   +           DA  V  
Sbjct: 3   RVVVAMSGGVDSSVTAYILKKMGYDVVGVTIKMFENQEKYLK-----------DAEAVAK 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++   + D    F+  VI  F +SY  G TP PC  CNR  KF  L +   + GAD +
Sbjct: 52  KLDIKWEMIDKTIEFQETVISYFINSYRKGLTPNPCAYCNRNAKFFFLYNEMLKYGADHI 111

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY      V  DG   + + +  + ++DQSY+L       L  L FPLG M K  VR
Sbjct: 112 ATGHYADI---VEVDG--HKYIKKSTNTKKDQSYYLALIRDDLLDKLLFPLGMMDKSEVR 166

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNGII 260
            +A  +GL++A+K DSQ++CF++ G Y D +K+ I+     +G  ++ N +I+ +H GI 
Sbjct: 167 KIASSIGLEVAEKKDSQEVCFLEGGDYRDYLKKMIDPNKIKKGYFIYNNERIM-KHEGIE 225

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLG+   +PL+V ++D  +  + +          + L   NW G      + 
Sbjct: 226 FYTVGQRRGLGIGYHKPLYVQHIDPVTFDIHLTDENRSGYRGVRLNNCNWFG------SP 279

Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F+   ++R         V+   DD   + F++ +   A GQ    Y  D     +LG
Sbjct: 280 KKLFRAQARLRYRMKDANTLVEILPDDRADLLFDEPQPFPAPGQVAAIYNKDI----LLG 335

Query: 380 GGIISG 385
           GG I G
Sbjct: 336 GGFIEG 341


>gi|254302170|ref|ZP_04969528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322362|gb|EDK87612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 343

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 194/362 (53%), Gaps = 22/362 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ +SGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC+
Sbjct: 3   KVVIGISGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCN 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +SH V +  + F N VI  F   Y+ G TP PCV C+  +KF  L  +  +  A+ +
Sbjct: 53  KLGISHEVINIRKDFENTVIKYFLDGYSTGITPSPCVICDDEIKFKILFDIADKYKAEYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL    K+ +R
Sbjct: 113 ATGHYTSVEY---SEFFSKYLLKSVHSIIKDQSYMLYRLSPTKLERLIFPLKPYSKQKIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL++ +K DSQ +CF ++G Y + +K       + G+ V  +G ILG+H G   
Sbjct: 170 EIALKIGLEVYNKKDSQGVCFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGQHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + +P+F+  +   ++ +++G  E LE+    +  IN+     +E   +
Sbjct: 229 YTIGQRRGLGINLSKPVFITEIIPQTNEIVLG--EFLELFTDKVELINFKFSVEYEK--L 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +  +   + R S       + ++ D +Y  + +     A GQ  VF+  +     V+GGG
Sbjct: 285 ENLELLARPRFSSTGFYGKLIKDRDKIYFKYNEENAHNAKGQHIVFFYDNF----VVGGG 340

Query: 382 II 383
            I
Sbjct: 341 EI 342


>gi|290581402|ref|YP_003485794.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus mutans NN2025]
 gi|254998301|dbj|BAH88902.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus mutans NN2025]
          Length = 373

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 199/381 (52%), Gaps = 29/381 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQKPRVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A + GL  A K DS  ICF+ +  + + +       A +G ++ ++G+ +G HNG++ 
Sbjct: 181 EIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEHNGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR G+G+         P FVV  D + + + VG     ++L    +   +++    
Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQVH---- 294

Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             F   + D F   C  K R  Q    V V+ N D   V F++ +  +  GQA VFY  D
Sbjct: 295 --FTQNMPDKFTLNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPGQAVVFYDGD 352

Query: 372 SNEARVLGGGIISGSKRSDAV 392
                 LGGG+I  + + + +
Sbjct: 353 ----ECLGGGLIDNAYQEEKI 369


>gi|166154498|ref|YP_001654616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis 434/Bu]
 gi|166155373|ref|YP_001653628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335758|ref|ZP_07224002.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis L2tet1]
 gi|205813555|sp|B0B7K3|MNMA_CHLT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205813565|sp|B0BBR8|MNMA_CHLTB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|165930486|emb|CAP03979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis 434/Bu]
 gi|165931361|emb|CAP06933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 358

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L     +L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVLELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|205814741|sp|A8AHK2|MNMA_CITK8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G+H G++ +T+GQR+GLG+        +P +VV  D +N+  V+    E   +  + L 
Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  V+  DD  + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFSGTL----RCTVKTRYRQTDIPCTVKALDDERIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY    N    LGGGII 
Sbjct: 345 SAVFY----NGEVCLGGGIIE 361


>gi|218128478|ref|ZP_03457282.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697]
 gi|317475697|ref|ZP_07934957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217989369|gb|EEC55682.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697]
 gi|316908153|gb|EFV29847.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 362

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 196/386 (50%), Gaps = 49/386 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D N  + RV+V MSGG+DS+    +L+  GY+++G+T+ ++              G +  
Sbjct: 5   DMNKAEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVW--------------GDEPS 50

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +AR++  ++ + HYV D  + FR  ++  F   Y  G TP PCV CN   KF  L     
Sbjct: 51  EARQLAQSMGIEHYVADERKAFREVIVRNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 110

Query: 135 QLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +L    +ATGHY R      ++Y+  GDD K            +DQSYFL+   Q  L  
Sbjct: 111 RLDCRYIATGHYTRLEERNGKIYIVAGDDEK------------KDQSYFLWRLGQDVLRR 158

Query: 188 LRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---G 243
             FPLG   K  VRD  R  G  + A++ +S ++CF+ +G Y D ++  +  I  E   G
Sbjct: 159 CLFPLGTYTKLQVRDYLRGKGYALKAEEGESMEVCFI-KGDYRDFLREYSPEIDKEVGPG 217

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
             V+  G  LG H G   YT+GQR+GL +A+G+P +V+ ++   + V++G  E L+   +
Sbjct: 218 WFVNSEGVKLGEHKGFPYYTVGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTEYM 277

Query: 304 YLREINWLGDGLFEDAVVDGFKCF-VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
              +     D L ++A V G +   V+IR    P+   V+R +DG + V F+     +A 
Sbjct: 278 LAEQ-----DNLIDEAEVFGNEELTVRIRYRSKPIACSVKRLEDGRLLVHFQTEASAIAP 332

Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387
           GQ+ VFY       RV+GG  I+  +
Sbjct: 333 GQSAVFYVG----KRVVGGSFIASQR 354


>gi|167580628|ref|ZP_02373502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis TXDOH]
          Length = 386

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 186/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-------FEKSEVGVASGQACV 366
               +   DG +C  K R  Q   P        G           F++ +  V  GQ+ V
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQSAV 350

Query: 367 FYTSDSNEARVLGGGII--SGSKRSDAVEESLLSVIGD 402
            Y  D      LGGGII  + + R DA   S  S + +
Sbjct: 351 LYDGDV----CLGGGIIEAAATGRPDAAPASRESTLAE 384


>gi|187478638|ref|YP_786662.1| tRNA-specific 2-thiouridylase MnmA [Bordetella avium 197N]
 gi|123514648|sp|Q2KZ71|MNMA_BORA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115423224|emb|CAJ49755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella avium 197N]
          Length = 370

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 191/378 (50%), Gaps = 28/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ DA  
Sbjct: 7   KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAAS 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 64  VADLIGVEFEYVNFASEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R      G+R +++ + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 124 EHIATGHYARVRAVDTARGQRFQLL-KALDASKDQSYFLHRLNQAQLSRTLFPLGELHKT 182

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+GL  A K DS  ICF+ +  + + + R        G I+   G+ LG+H+G
Sbjct: 183 EVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TAPGPILTPEGRRLGQHHG 240

Query: 259 IINYTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR- 306
           +  YT+GQR+GLG+             +  +    D KN++  +V   +   +    LR 
Sbjct: 241 LAFYTLGQRKGLGIGGVKGQQREDGTADAWYSARKDLKNNALYVVQGHDHPWLLSDTLRA 300

Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++NW+ DG              K R  Q   P  ++ ++ G  + F +++  V  GQ+ 
Sbjct: 301 QDVNWV-DG----EAPAAGAYAAKTRYRQADAPCELRADEAGFDLSFAQAQWAVTPGQSA 355

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y  D      LGGGII
Sbjct: 356 VLYDGDV----CLGGGII 369


>gi|313149619|ref|ZP_07811812.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138386|gb|EFR55746.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 362

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 194/380 (51%), Gaps = 47/380 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +
Sbjct: 5   NKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDAREL 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+    +LG D
Sbjct: 51  AVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCD 110

Query: 140 VLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FPL
Sbjct: 111 WIATGHYSRLEERNGYIYIVAGDDEK------------KDQSYFLWRLGQDVLRRCIFPL 158

Query: 193 GDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHL 248
           G+  K++VRD  RE G +   K  +S ++CF+ +G Y D ++     +  E   G  V  
Sbjct: 159 GNYTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIGPGWFVSS 217

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + 
Sbjct: 218 EGVKLGQHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMVAEQD 277

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           N +     ED +    +  V+IR    P+P  V+R +DG + V F      +A GQ+ VF
Sbjct: 278 NIVD----EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVF 333

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y       RV+GG  I+  +
Sbjct: 334 YDG----RRVIGGAFIASQR 349


>gi|145637334|ref|ZP_01792994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittHH]
 gi|145269426|gb|EDK09369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittHH]
          Length = 383

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 206/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI  ++G+I+GRH+G++
Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLGIGGLKNTGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIAGQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  DD +  V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 370 GEV----CLGGGIIA 380


>gi|21672533|ref|NP_660600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009493|sp|Q8K9Q8|MNMA_BUCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21623156|gb|AAM67811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 367

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 204/375 (54%), Gaps = 28/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V++AMSGGVDSSV A  LK + Y V G+ ++   + +    K  C A +D+ DA  
Sbjct: 4   KNKKVIIAMSGGVDSSVSAWFLKNENYQVEGLFMK---NWEEDDEKEYCNAAKDLSDAEE 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG 137
           VC  +N+  +  ++ + +   V   F + +  G+TP P + CN+ +KF    +   ++L 
Sbjct: 61  VCKKLNIHLHKVNFSKEYWEKVFENFLNEHKKGKTPNPDILCNKEIKFKIFFNYAIQELQ 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +D +ATGHY + +   G     +  + + +DL +DQSYFL+     QL ++ FP+G +KK
Sbjct: 121 SDYIATGHYAQIKKKNG-----KYFLLKAVDLNKDQSYFLYTLKGIQLKNILFPIGGLKK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A+++GL +A+K DS  ICF+   K  + + R     A +GDI+   G I+G+HN
Sbjct: 176 SQVRIIAKKIGLKVAEKKDSTGICFIGPKKINNFLNRYIK--AEKGDIITTEGTIVGKHN 233

Query: 258 GIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+  YT+GQR+GLG+   +     P +V+  +  ++ +I+      + L    +   +IN
Sbjct: 234 GLFCYTLGQRKGLGIGGIKGNYNIPWYVIEKNIINNTLIIAQGSCNKRLMSIGLIAEKIN 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D    D ++  F C  KIR  Q  +   ++  ND  + V F+     V  GQ+ VFY
Sbjct: 294 WIND----DKIIFPFSCQAKIRYRQIDIFCNIKYINDFLIKVLFDSPVSSVTPGQSIVFY 349

Query: 369 TSDSNEARVLGGGII 383
           +S       LGGG+I
Sbjct: 350 SSKI----CLGGGVI 360


>gi|194468395|ref|ZP_03074381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri 100-23]
 gi|194453248|gb|EDX42146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri 100-23]
          Length = 377

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 201/383 (52%), Gaps = 33/383 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAS 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +    D+  R  +M R  D  +DQ+YFL     +QL  + FPL    K  +R
Sbjct: 125 ATGHYADVKR---DENGRMHLM-RAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A E GL  ADK DS  ICF+ + G + + + +     A  G++  L+G+++G+H G++
Sbjct: 181 KIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQHMGLM 238

Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
            YTIGQRRGLG+       EP FV+  D   + + VG   E+  ++  +L   +++W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDVHWVDD 298

Query: 314 GLFEDAVVD----GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
                 VV      F C  K R  Q  V V V  +DD   V V+F+     +  GQA VF
Sbjct: 299 ------VVSRYGRDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRSD 390
           Y  +      LG  II  +   D
Sbjct: 353 YDGE----ECLGSAIIDRAYSHD 371


>gi|91776467|ref|YP_546223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacillus flagellatus KT]
 gi|123254088|sp|Q1GZF5|MNMA_METFK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91710454|gb|ABE50382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacillus flagellatus KT]
          Length = 360

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 191/386 (49%), Gaps = 51/386 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY+V+G+ ++ +      +    C A QD+ DA  V D
Sbjct: 4   KVIVGMSGGVDSSVAALLLKEQGYEVVGLFMKNWEDDDTDEY---CPAKQDLIDAAAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++ + ++  V   F   Y+AG TP P + CN  +KF   L     LG D++
Sbjct: 61  KIGIELEAVNFSKEYKERVFANFLEEYSAGRTPNPDILCNSEIKFKAFLDHAMALGGDLM 120

Query: 142 ATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY + R       L   DDG             +DQSYFL+   Q QL    FPLG 
Sbjct: 121 ATGHYAQVREKNGLFQLMKADDGT------------KDQSYFLYRLNQAQLSKTLFPLGH 168

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  +RD+AR  GL  ++K DS  ICF+ +  + + + R        G+I    G+++G
Sbjct: 169 LLKREIRDIARRAGLPTSEKKDSTGICFIGERPFQEFLSRYLP--RAPGEIQTPEGKVVG 226

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +H+G++ YT+GQR+GLG+     + GEP FV   D   + +IV     ++ H   L    
Sbjct: 227 QHHGLMYYTMGQRQGLGIGGSKDSNGEPWFVAGKDMQRNVLIV-----VQGHDHPLL--- 278

Query: 310 WLGDGLFEDAV--VDG------FKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVA 360
            L DGL  D +  + G      +    K R  Q   P  + R D G   + F   +  + 
Sbjct: 279 -LNDGLIADNLHWIAGEEPKTHWVYAAKTRYRQPDAPCEIDRLDSGTAEIRFGHKQWAIT 337

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ V Y S+      LGGGII+ +
Sbjct: 338 PGQSVVVYESNV----CLGGGIITSA 359


>gi|15603201|ref|NP_246275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|14195272|sp|Q9CLA3|MNMA_PASMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|12721705|gb|AAK03420.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 29/386 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L++  L +N K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C 
Sbjct: 13  LSAEQLAENRKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCT 68

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF  
Sbjct: 69  AAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKA 128

Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L    + LGAD +ATGHY+R       DG+ +  + R +D  +DQSYFL+  ++ Q+  
Sbjct: 129 FLDYAAEDLGADYIATGHYVRRG---EKDGQCQ--LLRGLDNNKDQSYFLYTLSKDQVAQ 183

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  
Sbjct: 184 SLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIRT 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV----AMGE-PLFVVYLDKNSSRVIVGP---RESLE 299
           + G+++GRH+G++ +T+GQR+GLG+     MGE P +VV  D  ++ ++V       +L 
Sbjct: 242 VEGKVVGRHDGLMYHTLGQRKGLGIGGVKGMGEDPFYVVEKDLVNNVLVVAQGHDNSALL 301

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              +   +++W+        V    +C VK R  Q+ +P  +Q  ND+ + V F++ ++ 
Sbjct: 302 SSGLIASQLHWVDRQPIRQPV----RCTVKTRYRQEDIPCEIQPINDETIRVVFDEPQIA 357

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           V  GQ+ VFY  +      LGGG+I 
Sbjct: 358 VTPGQSAVFYQGEI----CLGGGVIE 379


>gi|46579220|ref|YP_010028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404995|sp|Q72DX2|MNMA_DESVH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46448633|gb|AAS95287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233051|gb|ADP85905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris RCH1]
          Length = 346

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 178/368 (48%), Gaps = 26/368 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRV 79
           M + VAMSGG DS     LLK  G  V G+  +                G D V D R +
Sbjct: 1   MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-----------TGHDPVPDIRAM 49

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + V  +V D  E F   V+ PF   Y  G TP PC  CN T+KF  L      +GA 
Sbjct: 50  CDRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAV 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R   +     +   ++ R +D  +DQSYFL      +L    FPLG+ +KE+
Sbjct: 110 HLATGHYARLLRHP----RWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEA 165

Query: 200 VR-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           VR +LAR   +     S+SQ+ICFV    Y   +K     +   G IV   G+ +G H G
Sbjct: 166 VRGELARR-SIVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAG 224

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQR+GLG+A  EPL+VV  D  ++ ++VG RE+L        E+N L    +ED
Sbjct: 225 LWQYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLLVP--YED 282

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              +     V+IR  Q P+   V   D  +Y  F + +   A GQ    Y     E  VL
Sbjct: 283 WPAE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVY---DMEHHVL 336

Query: 379 GGGIISGS 386
           GGG+I G 
Sbjct: 337 GGGVILGP 344


>gi|323524770|ref|YP_004226923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1001]
 gi|323381772|gb|ADX53863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1001]
          Length = 381

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 179/373 (47%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRENNG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 KIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L  HR+     +W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHRLTAGNTSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
               +   +GF C  K R  Q D    F      G    + F+ ++  V  GQ+ V Y  
Sbjct: 295 ----EPPAEGFACGAKTRYRQADARCTFSAAGAGGDLFQLTFDDAQWAVTPGQSAVLYDG 350

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 351 DV----CLGGGII 359


>gi|162139594|ref|YP_216172.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|71658017|sp|Q57QC0|MNMA_SALCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|322714225|gb|EFZ05796.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 368

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|312795152|ref|YP_004028074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166927|emb|CBW73930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [Burkholderia rhizoxinica HKI 454]
          Length = 380

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 27/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C + QD  D   V D
Sbjct: 5   RVVIGMSGGVDSSVAAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSSRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++  ++++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAQYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R      G+R  ++ + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRRI----GERFELL-KALDSSKDQSYFLHRLNQSQLSRTLFPLGELPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  +   + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAAKKDSTGICFIGERPFRTFLNRYLP--TRPGPMRTPDGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDK--NSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       GEP FV   D   N+  V+ G     L    +     +W+  
Sbjct: 235 YTLGQRKGIGLGGSRDGSGEPWFVAGKDMAGNTLYVVQGHDHPWLLSSTLQAENASWIAG 294

Query: 314 GLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                A  DG  C  K R   QD    F    D    + F +S+  V  GQ+ V Y  D 
Sbjct: 295 A----APQDGHSCTAKTRYRQQDAACTFQHAPDRHFALHFAQSQWAVTPGQSAVLYDGDV 350

Query: 373 NEARVLGGGIISGS 386
                LGGGII  +
Sbjct: 351 ----CLGGGIIGAT 360


>gi|184158965|ref|YP_001847304.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii ACICU]
 gi|294840582|ref|ZP_06785265.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6014059]
 gi|205811014|sp|B2HVN5|MNMA_ACIBC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183210559|gb|ACC57957.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Acinetobacter baumannii ACICU]
 gi|322508947|gb|ADX04401.1| trmU [Acinetobacter baumannii 1656-2]
 gi|323518933|gb|ADX93314.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 377

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238

Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
               ++   +G +C  K R  Q      VF+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|312966389|ref|ZP_07780611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 2362-75]
 gi|312288842|gb|EFR16740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 2362-75]
          Length = 368

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGISGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|294777621|ref|ZP_06743072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|294448689|gb|EFG17238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
          Length = 351

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 182/363 (50%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGG DSSV A LL+  GY+V G+T + Y     +         + + DAR +C+
Sbjct: 9   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDT---------EYLEDARALCE 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ H  +D  + FR  +I  F + Y AG TP+PC  CN  +K+  L  ++ ++G    
Sbjct: 60  RLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYHF 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R   G        +    D ++DQS+FL+   Q+ L  +  P+G++ K  VR
Sbjct: 120 ATGHYVRRRFINGCYH-----ITTGADPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174

Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E G L  A K DS  +CF        + K +  G  L G      G  + RH G  
Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E       L  +  
Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITNPALLLNK- 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D     ++ R   +   V +Q  D+ ++V   +    +A GQA  FY  D     VLGG
Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347

Query: 381 GII 383
           GII
Sbjct: 348 GII 350


>gi|307728482|ref|YP_003905706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1003]
 gi|307583017|gb|ADN56415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1003]
          Length = 385

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 182/377 (48%), Gaps = 33/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L  H +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLFVAQGHDHPWLLSHTLTAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVF------VQRNDDGVYVDFEKSEVGVASGQACV 366
               +   +GF C  K R  Q D    F          +D   + F++++  V  GQ+ V
Sbjct: 295 ----EPPPEGFACGAKTRYRQADARCTFRSASGATTNGEDLFELTFDEAQWAVTPGQSAV 350

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D      LGGGII
Sbjct: 351 LYDGDV----CLGGGII 363


>gi|167847243|ref|ZP_02472751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei B7210]
          Length = 373

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 181/377 (48%), Gaps = 30/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G+H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y 
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350

Query: 370 SDSNEARVLGGGIISGS 386
            D      LGGGII  +
Sbjct: 351 GDV----CLGGGIIESA 363


>gi|109898694|ref|YP_661949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas atlantica T6c]
 gi|122971887|sp|Q15T93|MNMA_PSEA6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109700975|gb|ABG40895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas atlantica T6c]
          Length = 396

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 204/392 (52%), Gaps = 33/392 (8%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L++ +L  N +  +V+V MSGGVDSSV A +L + GY V G+ ++ +      +    C 
Sbjct: 26  LSATELASNSQK-KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CA 81

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D+ DA+ V D + +  +  ++   + + V   F   Y +G TP P + CN+ +KF  
Sbjct: 82  AADDLKDAQAVADKLGIVLHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKA 141

Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L     +L AD +ATGHY+R R     DG  +  M R MD  +DQSYFL+   +Q +  
Sbjct: 142 FLEFAAEELEADYIATGHYVRRREV---DGHWQ--MLRGMDDNKDQSYFLYTLGEQHVGQ 196

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+GD++K  VR++A+E GL   DK DS  ICF+ + K+ D + +     A  G I  
Sbjct: 197 TLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIET 254

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGE----PLFVVYLDKNSSRVIVG-----PRES 297
             GQ +G+H G++ +T+GQR+GL +  M E    P +VV  D   + +IVG     PR  
Sbjct: 255 PEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPR-- 312

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L  + +   +++W+             KC VK R  Q+ +   +    DG V V F++ +
Sbjct: 313 LYSNGLIANQLHWVD----RTGPTSPMKCSVKTRYRQEDIACTLTPEPDGNVRVMFDEPQ 368

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
             V  GQ+ VFY ++      LGGGII    R
Sbjct: 369 KAVTPGQSAVFYLNEV----CLGGGIIESYIR 396


>gi|330881196|gb|EGH15345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 161/277 (58%), Gaps = 15/277 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG 293
           +TIGQR+GLG+     A  +P +V+  D +++ +IVG
Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVG 269


>gi|169795184|ref|YP_001712977.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AYE]
 gi|213158152|ref|YP_002320203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB0057]
 gi|215482732|ref|YP_002324930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|239501147|ref|ZP_04660457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB900]
 gi|260556664|ref|ZP_05828882.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606]
 gi|294837181|ref|ZP_06781864.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013113]
 gi|294860682|ref|ZP_06798451.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013150]
 gi|301346855|ref|ZP_07227596.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB056]
 gi|301511134|ref|ZP_07236371.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB058]
 gi|301596413|ref|ZP_07241421.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB059]
 gi|205811029|sp|B0VBY5|MNMA_ACIBY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205815008|sp|A3M7G3|MNMA_ACIBT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226704765|sp|B7GZ21|MNMA_ACIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226704766|sp|B7I4K8|MNMA_ACIB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169148111|emb|CAM85974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AYE]
 gi|213057312|gb|ACJ42214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB0057]
 gi|213987036|gb|ACJ57335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|260409923|gb|EEX03223.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606]
          Length = 377

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238

Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
               ++   +G +C  K R  Q      VF+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|319746158|gb|EFV98430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae ATCC 13813]
          Length = 397

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 30  NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 86

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 87  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 146

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 147 YVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 202

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H G+
Sbjct: 203 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 260

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI++ 
Sbjct: 261 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 320

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            D   E  +    +C  K R  Q    V V    +   V F+  +  +  GQA VFY   
Sbjct: 321 RDMPNEFKL----ECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY--- 373

Query: 372 SNEARVLGGGIISGSKRSDAV 392
            NE   LGGG+I  + R D +
Sbjct: 374 -NEQECLGGGMIDQAYRDDKI 393


>gi|221214491|ref|ZP_03587462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD1]
 gi|221165748|gb|EED98223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD1]
          Length = 381

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRGLVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   +GF C  K R  Q D    F +   +   + F  ++  V  GQ+ V Y  + 
Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYDGEI 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|157165469|ref|YP_001467209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter concisus 13826]
 gi|205811585|sp|A7ZEK1|MNMA_CAMC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112799930|gb|EAT97274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter concisus 13826]
          Length = 340

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 198/369 (53%), Gaps = 35/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS++ A  L+  G++V G  + L+      +        +++   ++V 
Sbjct: 1   MKIMVAMSGGVDSTMTAKFLQEAGHEVQGCYMMLHQKPGYHE--------ENIRKVKKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D +++F   V  PF   Y  G+TP PC  CN+ +K   LL   +  G + 
Sbjct: 53  EYLGIKVHILDLQDKFNEYVYDPFVRLYKEGKTPNPCALCNKFIKLGALLDFAKVNGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY++       DG    I C   D  +DQSYFL    ++ L D+ FPLGD  K+ +
Sbjct: 113 LATGHYVQVV-----DG---FITC-AKDPSKDQSYFLAQVPKEVLKDVIFPLGDKFKKDI 163

Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LAR + +  + A +++S +ICFV+   Y +V+ + +    L G++V  +G I+GRH G
Sbjct: 164 KELARGVKVLEEFATQAESSEICFVEN-TYIEVLNK-HYNTNLPGNVVDKDGNIIGRHQG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   + ++VG ++ L    + L  +N     LF 
Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVIKINAEKNEIVVGTKDDLAQKVVELENVN-----LFI 276

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D   D F+C  KIR     +  FV+  ++     +   ++ +GVA GQ CV Y  D    
Sbjct: 277 DE--DKFECETKIRYRSPKLEAFVEVDKSSKTAKLTLNQNALGVAQGQLCVMYDGD---- 330

Query: 376 RVLGGGIIS 384
           RV+  G I 
Sbjct: 331 RVIASGFIK 339


>gi|53720497|ref|YP_109483.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
           K96243]
 gi|126440060|ref|YP_001060365.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 668]
 gi|167817350|ref|ZP_02449030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 91]
 gi|167904220|ref|ZP_02491425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei NCTC 13177]
 gi|217421190|ref|ZP_03452695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 576]
 gi|81379110|sp|Q63QY5|MNMA_BURPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205813851|sp|A3NDE4|MNMA_BURP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52210911|emb|CAH36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|126219553|gb|ABN83059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 668]
 gi|217396602|gb|EEC36619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 576]
          Length = 383

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 180/377 (47%), Gaps = 30/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y 
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350

Query: 370 SDSNEARVLGGGIISGS 386
            D      LGGGII  +
Sbjct: 351 GDV----CLGGGIIESA 363


>gi|160890666|ref|ZP_02071669.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492]
 gi|270295763|ref|ZP_06201963.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|317479803|ref|ZP_07938923.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|156859665|gb|EDO53096.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492]
 gi|270273167|gb|EFA19029.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|316904009|gb|EFV25843.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 364

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 47/383 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N    RV+V MSGG+DS+    +L+  GY++IG+T+ ++              G +  +A
Sbjct: 2   NKPGKRVLVGMSGGIDSTATCLMLREQGYEIIGLTMWVW--------------GDEPVEA 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + D++ + HYV D  + FR  ++  F   Y  G TP PCV CN   KF  L     +L
Sbjct: 48  RSLADSMGIEHYVADERDAFRRIIVRNFIDEYRRGRTPNPCVMCNPLFKFRILTEWADRL 107

Query: 137 GADVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           G   +ATGHY R       + +  GDD K            +DQSYFL+   Q+ L    
Sbjct: 108 GCAFVATGHYTRLEERNGKTYIVAGDDDK------------KDQSYFLWRLGQEVLKRCI 155

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K  VR   R+ G  + A++ +S ++CF+ +G Y D ++  +  I  E   G  
Sbjct: 156 FPLGAFTKMQVRGYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSEVGPGWF 214

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +  
Sbjct: 215 VNSEGVKLGGHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMLA 274

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
            E N + +  F  +     +  V+IR    P+P  V+R +DG + V F      +A GQ+
Sbjct: 275 EEENLIDEAEFFGSE----ELTVRIRYRSKPIPCTVKRLEDGRLLVRFLSEASAIAPGQS 330

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            VFY       RV+GG  I+  +
Sbjct: 331 AVFYVG----RRVVGGSFIASQR 349


>gi|84391736|ref|ZP_00991638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio splendidus 12B01]
 gi|84376449|gb|EAP93328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio splendidus 12B01]
          Length = 378

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 27/386 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     + +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D
Sbjct: 3   DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             + L AD +A GHY+R      +  D   +  M R +D  +DQSYFL+  +  Q+    
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGVKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G+I    
Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LE 299
           GQ++G+H G++ +T+GQR+GL +          +P FV   D K +  + V  ++   L+
Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVG 358
              +   +++W+        + +   C VK R  Q  +P   +  +DD + V F++ ++ 
Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDDNIKVIFDEPQIA 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           V  GQ+ VFY  +      LGGGII 
Sbjct: 354 VTPGQSAVFYQDEV----CLGGGIIE 375


>gi|26107782|gb|AAN79981.1|AE016759_255 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli CFT073]
          Length = 383

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 209/394 (53%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + L AD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLCADYIATGHYVR-RAXV--DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+   + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D +N+  ++  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
             E   +  + L  ++++W+    F   +    +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY    N    LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376


>gi|260549713|ref|ZP_05823930.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624]
 gi|260407230|gb|EEX00706.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624]
          Length = 377

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 23/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238

Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGMKGAAEGAWFVLHKDVANNRLVVGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
               +    +G +C  K R  Q      VF+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QHIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGIISGS 386
            +      LGGG+I  +
Sbjct: 357 DEV----CLGGGVIHHT 369


>gi|77412483|ref|ZP_00788784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae CJB111]
 gi|77161459|gb|EAO72469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae CJB111]
          Length = 373

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 6   NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H G+
Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI++ 
Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            D   E  +    +C  K R  Q    V V    +   V F+  +  +  GQA VFY   
Sbjct: 297 RDMPNEFKL----ECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY--- 349

Query: 372 SNEARVLGGGIISGSKRSDAV 392
            NE   LGGG+I  + R D +
Sbjct: 350 -NEQECLGGGMIDQAYRDDKI 369


>gi|161525855|ref|YP_001580867.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC
           17616]
 gi|189349424|ref|YP_001945052.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC
           17616]
 gi|205811411|sp|A9AH63|MNMA_BURM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160343284|gb|ABX16370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans ATCC 17616]
 gi|189333446|dbj|BAG42516.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Burkholderia multivorans ATCC 17616]
          Length = 381

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   +GF C  K R  Q D    F +   +   + F  ++  V  GQ+ V Y  + 
Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYDGEI 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|16760109|ref|NP_455726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142120|ref|NP_805462.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413780|ref|YP_150855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614531|ref|YP_001588496.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168233116|ref|ZP_02658174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168244308|ref|ZP_02669240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168467196|ref|ZP_02701038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822341|ref|ZP_02834341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194444280|ref|YP_002040490.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449928|ref|YP_002045236.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472097|ref|ZP_03078081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249278|ref|YP_002146807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362703|ref|YP_002142340.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245672|ref|YP_002215901.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204930753|ref|ZP_03221626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353032|ref|YP_002226833.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857259|ref|YP_002243910.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213428090|ref|ZP_03360840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213580464|ref|ZP_03362290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213612639|ref|ZP_03370465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213648222|ref|ZP_03378275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|224584258|ref|YP_002638056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|24638320|sp|Q8Z7G9|MNMA_SALTI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658018|sp|Q5PMJ4|MNMA_SALPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816911|sp|A9N4K8|MNMA_SALPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|25298380|pir||AC0647 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502403|emb|CAD08358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137749|gb|AAO69311.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56128037|gb|AAV77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|161363895|gb|ABX67663.1| hypothetical protein SPAB_02280 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402943|gb|ACF63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408232|gb|ACF68451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194458461|gb|EDX47300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195630429|gb|EDX49055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197094180|emb|CAR59684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197212981|gb|ACH50378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197940188|gb|ACH77521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204320212|gb|EDZ05416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272813|emb|CAR37739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205332653|gb|EDZ19417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336786|gb|EDZ23550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205341217|gb|EDZ27981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|206709062|emb|CAR33395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224468785|gb|ACN46615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322616610|gb|EFY13519.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619875|gb|EFY16749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622443|gb|EFY19288.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629439|gb|EFY26216.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632935|gb|EFY29678.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636820|gb|EFY33523.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641380|gb|EFY38019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645145|gb|EFY41674.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652308|gb|EFY48664.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655660|gb|EFY51962.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660965|gb|EFY57195.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665449|gb|EFY61637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667574|gb|EFY63735.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673632|gb|EFY69734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677558|gb|EFY73622.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679777|gb|EFY75816.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687250|gb|EFY83222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193058|gb|EFZ78280.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199445|gb|EFZ84538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203633|gb|EFZ88655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208826|gb|EFZ93764.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217800|gb|EGA02515.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218889|gb|EGA03400.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226637|gb|EGA10837.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229603|gb|EGA13726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232828|gb|EGA16924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240136|gb|EGA24180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242877|gb|EGA26898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246793|gb|EGA30763.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254307|gb|EGA38124.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255573|gb|EGA39332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259407|gb|EGA43043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267003|gb|EGA50488.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272107|gb|EGA55521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 368

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|24380473|ref|NP_722428.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans UA159]
 gi|30173426|sp|Q8DRS4|MNMA_STRMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24378503|gb|AAN59734.1|AE015035_3 putative tRNA [Streptococcus mutans UA159]
          Length = 373

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 199/381 (52%), Gaps = 29/381 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQKPRVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A + GL  A K DS  ICF+ +  + + +       A +G ++ ++G+ +G HNG++ 
Sbjct: 181 EIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEHNGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR G+G+         P FVV  D + + + VG     ++L    +   +++    
Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQVH---- 294

Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             F   + D F   C  K R  Q    V V+ N D   V F++ +  +  GQA VFY  D
Sbjct: 295 --FTQNMPDKFTLNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPGQAVVFYDGD 352

Query: 372 SNEARVLGGGIISGSKRSDAV 392
                 LGGG+I  + + + +
Sbjct: 353 ----ECLGGGLIDNAYQEEKI 369


>gi|330446458|ref|ZP_08310110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490649|dbj|GAA04607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 371

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 203/378 (53%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R R +   +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYTR-RSFPTAEGEKPQ-MLRGVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R +A E GL  A K DS  ICF+ + K+ + + +     A  G IV  + G+ +G H G+
Sbjct: 183 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIGEHQGL 240

Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           + +T+GQR+GL       G    +  +VV  D  ++ +IVG     PR  L+ + +  ++
Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVENNLLIVGQGKDHPR--LKSNGLIAKQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +   C VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 299 LHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY    N    LGGGII 
Sbjct: 355 FY----NGEICLGGGIIE 368


>gi|53726189|ref|YP_103922.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei ATCC 23344]
 gi|67642326|ref|ZP_00441084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei GB8 horse 4]
 gi|121599684|ref|YP_991629.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei SAVP1]
 gi|124385119|ref|YP_001027125.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10229]
 gi|126448036|ref|YP_001082070.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10247]
 gi|167000516|ref|ZP_02266328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei PRL-20]
 gi|254178980|ref|ZP_04885634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei ATCC 10399]
 gi|254202634|ref|ZP_04908997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei FMH]
 gi|254207974|ref|ZP_04914324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei JHU]
 gi|254355888|ref|ZP_04972166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei 2002721280]
 gi|81604334|sp|Q62H98|MNMA_BURMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811421|sp|A3MP84|MNMA_BURM7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811429|sp|A2S5A6|MNMA_BURM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811467|sp|A1V076|MNMA_BURMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52429612|gb|AAU50205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei ATCC 23344]
 gi|121228494|gb|ABM51012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei SAVP1]
 gi|124293139|gb|ABN02408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei NCTC 10229]
 gi|126240906|gb|ABO03999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei NCTC 10247]
 gi|147746881|gb|EDK53958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei FMH]
 gi|147751868|gb|EDK58935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei JHU]
 gi|148024863|gb|EDK83041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei 2002721280]
 gi|160694894|gb|EDP84902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei ATCC 10399]
 gi|238523456|gb|EEP86894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei GB8 horse 4]
 gi|243063570|gb|EES45756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei PRL-20]
          Length = 383

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 180/377 (47%), Gaps = 30/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAVKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y 
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350

Query: 370 SDSNEARVLGGGIISGS 386
            D      LGGGII  +
Sbjct: 351 GDV----CLGGGIIESA 363


>gi|60683221|ref|YP_213365.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|81313727|sp|Q5L8X6|MNMA3_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|60494655|emb|CAH09456.1| putative tRNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|301164740|emb|CBW24299.1| putative tRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 362

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +  
Sbjct: 7   RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+    +LG D +
Sbjct: 53  RMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112

Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FPLG+
Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160

Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250
             K++VRD  RE G +   K  +S ++CF+ +G Y D ++     +  E   G  V   G
Sbjct: 161 YTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L    +   + N 
Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNI 279

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +     ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY 
Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYE 335

Query: 370 SDSNEARVLGGGIISGSK 387
                 RVLGG  I+  +
Sbjct: 336 G----RRVLGGAFIASQR 349


>gi|168483769|ref|ZP_02708721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042905|gb|EDT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1873-00]
          Length = 373

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG +KK  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLKKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|167586157|ref|ZP_02378545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ubonensis Bu]
          Length = 382

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 180/371 (48%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L   R+    ++W   
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRRLVAGNVSWTAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   DGF C  K R  Q D    F +   +   + F+ ++  V  GQ+ V Y  + 
Sbjct: 295 ----EPPADGFACGAKTRYRQADAGCTFARAGGERFSLTFDDAQWAVTPGQSAVLYDGEI 350

Query: 373 NEARVLGGGII 383
                +GGGII
Sbjct: 351 ----CVGGGII 357


>gi|160871950|ref|ZP_02062082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsiella grylli]
 gi|159120749|gb|EDP46087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsiella grylli]
          Length = 361

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 188/376 (50%), Gaps = 31/376 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV+V +SGGVDSSV A LLK  GY V G+ ++ +        +  C A  D+ DA+ 
Sbjct: 2   KKKRVMVGLSGGVDSSVAALLLKEQGYQVEGLFMKNWEE---DDTEVYCSASTDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD + +     ++   + NAV + F + Y  G TP P + CN+ +KF   L      GA
Sbjct: 59  ICDKLAIPLRTINFAAEYWNAVFMHFLAEYRRGRTPNPDILCNKEIKFKAFLQYALHTGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY         +   + + C   D  +DQ+YFL+   Q  L    FPL  + K 
Sbjct: 119 DFIATGHYAHKSF---QNNMYQLLQC--ADKNKDQTYFLYTLGQHPLAHTLFPLARLTKS 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALE-GDIVHLNGQILGRH 256
            VR +A+  G   A K DS  ICF+ + K+    KR +   + L+ G I  L G+ +G+H
Sbjct: 174 EVRAIAQSKGFVNATKKDSTGICFIGERKF----KRFLQTYLPLQPGPIETLEGETVGQH 229

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRE-SLEVHRIYLREI 308
           +G++ YTIGQR+GLG+      +G P +VV   L+ N+  V+ G    +L    +   ++
Sbjct: 230 DGLMYYTIGQRQGLGIGGQREKLGVPWYVVDKKLNHNALIVVQGKEHPALFSSNLICTDL 289

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           +W+     E  +     C  KIR  Q   P  +Q   +D  +V F+  +  +  GQ+ VF
Sbjct: 290 HWVN----ECPLTLPLNCAAKIRYRQLETPCLIQPCANDAYHVRFKIPQRAITIGQSIVF 345

Query: 368 YTSDSNEARVLGGGII 383
           Y         LGGGII
Sbjct: 346 YQGPV----CLGGGII 357


>gi|255506865|ref|ZP_05382504.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D(s)2923]
 gi|289525326|emb|CBJ14802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis Sweden2]
 gi|296434876|gb|ADH17054.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/150]
 gi|296438596|gb|ADH20749.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/11023]
          Length = 358

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 194/367 (52%), Gaps = 27/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VAMSGGVDSSVVA LLK+ G  +V+G+ ++ +  +  +   G C A +D  D  R+ +
Sbjct: 5   IIVAMSGGVDSSVVAYLLKKQGECNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G  
Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316
            YTIGQRRGL +  M +P +V+   ++KN   ++ G    L   +  L +E+NW      
Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++ ++   K  V+ RS  +   V+    D  V V F+     V  GQ   FY  D     
Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343

Query: 377 VLGGGII 383
            LGGG+I
Sbjct: 344 CLGGGVI 350


>gi|260913335|ref|ZP_05919816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632566|gb|EEX50736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 214/386 (55%), Gaps = 29/386 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L++  L +N K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C 
Sbjct: 13  LSTAQLSENSKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CT 68

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF  
Sbjct: 69  AAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKA 128

Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L    + LGAD +ATGHY+R       DG+ +  + R +D  +DQSYFL+  ++ Q+  
Sbjct: 129 FLEYAAEDLGADYIATGHYVRRS---EKDGECQ--LLRGLDNNKDQSYFLYTLSKDQVAQ 183

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  
Sbjct: 184 SLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIKT 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV----AMGE-PLFVVYLDKNSSRVIVGP---RESLE 299
           ++G ++GRH+G++ +T+GQR+GLG+     M E P +VV  D  ++ ++V       +L 
Sbjct: 242 VDGVVVGRHDGLMYHTLGQRKGLGIGGVKGMSEDPFYVVEKDLANNVLVVAQGHDNSALL 301

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              +   +++W+   +    V    +C VK R  Q+ +P  +Q  +D+ + V F+++++ 
Sbjct: 302 SSGLIASQLHWVDRKVIRKPV----RCTVKTRYRQEDIPCEIQPIDDETIRVVFDEAQIA 357

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           V  GQ+ VFY  +      LGGG+I 
Sbjct: 358 VTPGQSAVFYQGEV----CLGGGVIE 379


>gi|145631293|ref|ZP_01787065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
 gi|144983078|gb|EDJ90578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
          Length = 362

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 209/378 (55%), Gaps = 32/378 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ 
Sbjct: 2   RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LG
Sbjct: 59  VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+    FP+G++KK
Sbjct: 119 AHYIATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+
Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHD 231

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR-----E 307
           G++ +T+GQR+GLG+     A  E  +VV  D  ++ +IV   +  +  R++ R     +
Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVA--QGHDHPRLFSRGLIASQ 289

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ V
Sbjct: 290 LHWVD----REPIRESLRCTVKTRYRQQDIPCVIESIDDETIRVIFDEPQSAVTPGQSAV 345

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII+
Sbjct: 346 FYLGEV----CLGGGIIA 359


>gi|227544860|ref|ZP_03974909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300909920|ref|ZP_07127380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri SD2112]
 gi|227185134|gb|EEI65205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300892568|gb|EFK85928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri SD2112]
          Length = 377

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 201/383 (52%), Gaps = 33/383 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAS 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +    D+  R  +M R  D  +DQ+YFL     +QL  + FPL    K  +R
Sbjct: 125 ATGHYADVKR---DENGRMHLM-RAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A E GL  ADK DS  ICF+ + G + + + +     A  G++  L+G+++G+H G++
Sbjct: 181 KIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQHMGLM 238

Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
            YTIGQRRGLG+       EP FV+  D   + + VG   E+  ++  +L   +I+W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDIHWVDD 298

Query: 314 GLFEDAVVD----GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
                 VV      F C  K R  Q  V V V  ++D   V V+F+     +  GQA VF
Sbjct: 299 ------VVSRYGRDFHCTAKFRYRQTDVGVTVHLSEDDQMVTVEFDDPARAITPGQAVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRSD 390
           Y  +      LG  II  +   D
Sbjct: 353 YDGE----ECLGSAIIDRAYSHD 371


>gi|312869501|ref|ZP_07729656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus oris PB013-T2-3]
 gi|311094948|gb|EFQ53237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus oris PB013-T2-3]
          Length = 377

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +     D   R  + R  D  +DQ+YFL      QL  + FPL +  K  +R
Sbjct: 125 ATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLANYTKPQIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A+E GL  A+K DS  ICF+ + G + + + +     A  G++  ++G+++G+H G++
Sbjct: 181 EIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQHMGLM 238

Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQRRGLG+       EP FV+  D   + + VG     E L    +   +I+W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDIEKNVLYVGQGYHNEHLYATHLEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
            +        F C  K R  Q  V V V+  DD   V V F+     +  GQA VFY  D
Sbjct: 299 VVSRYG--REFHCTAKFRYRQKDVGVTVRIADDDQMVTVTFDDPARAITPGQAVVFY--D 354

Query: 372 SNEARVLGGGIISGSKRSD 390
             E   LG  II  +  +D
Sbjct: 355 GQEC--LGSAIIDRAYNAD 371


>gi|15838041|ref|NP_298729.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa 9a5c]
 gi|14195287|sp|Q9PDD9|MNMA_XYLFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9106458|gb|AAF84249.1|AE003974_4 tRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 379

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQRETIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADSI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R + Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K  +R
Sbjct: 121 ATGHYARIKHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATMFPIGDLEKPQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQAGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V   R+S  +   +LR    +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                     F C  + R  Q  +P  V V RND  + VDF +++  V  GQ+ V Y  D
Sbjct: 294 ----SPPAPTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTQTQWAVTPGQSLVLY--D 346

Query: 372 SNEARVLGGGIISGS 386
            NE   LGG +I+ +
Sbjct: 347 GNE--CLGGAVIATT 359


>gi|154250437|ref|YP_001411262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fervidobacterium nodosum Rt17-B1]
 gi|205816865|sp|A7HNX2|MNMA_FERNB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|154154373|gb|ABS61605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 348

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 193/369 (52%), Gaps = 30/369 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-----QLYNSRKASKRKGSCCAGQDVYDA 76
           +V V +SGGVDS+V   LL   GY+V    +     +LY +++   +   CC+  D +DA
Sbjct: 4   KVGVLLSGGVDSAVALYLLIEKGYEVTAYHMKTVRDELYITKQIKHK--VCCSPSDTHDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + +     V   +   E+ F+  +I  F S   AG+TP PC  CN  +KF  ++ V    
Sbjct: 62  QLIAKKFGVPFKIIHVEDVFKEKIIDYFISENLAGKTPNPCFFCNDYIKFGFVMDVALSD 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +A+GHY R       +GK    + R +D E+DQSYFL +  +++L  +  P G+  
Sbjct: 122 GMDFVASGHYARIL-----NGK----LYRALDKEKDQSYFLASIKKEKLSKILLPNGEYS 172

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGR 255
           KE++RD+A   G+ +A K DSQD+CF+    +    +    G+ +E G+I+   G+I+G+
Sbjct: 173 KETIRDIAERAGIHVAKKIDSQDLCFLPDNDFKSFFEE--RGVKIEPGNIITSEGKIIGK 230

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G+  YTIGQR+ LGVA G+ L+V   +   + ++V P + +  + + ++ +N   D  
Sbjct: 231 HEGLPFYTIGQRK-LGVAAGQKLYVKAKNVEGNFIVVSPLDEVYQNEMRVKNLNIYVD-- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               + D F   VKIR     VP  V+   D + V F +    V  GQ  VFY    NE 
Sbjct: 288 ----LPDEFLATVKIRKKFKEVPCRVEYLKDELKVQFLEPVFAVTPGQIAVFY----NED 339

Query: 376 RVLGGGIIS 384
            VL  G+I 
Sbjct: 340 EVLCSGVIE 348


>gi|297537830|ref|YP_003673599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera sp. 301]
 gi|297257177|gb|ADI29022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera sp. 301]
          Length = 369

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 200/383 (52%), Gaps = 27/383 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++L+K+ K   VVV +SGGVDSSV A LLK+ GY+V G+ ++ +      +    C + Q
Sbjct: 1   MNLNKSSKK-HVVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDEY---CSSKQ 56

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA  V D I +     ++ + +++ V   F S Y AG TP P + CN  +KF   L 
Sbjct: 57  DLIDAVSVADKIGIDIEAVNFSKEYKDRVFDNFLSEYKAGRTPNPDILCNAEIKFKAFLD 116

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGADV+ATGHY + R      G  +  + +  D  +DQSYFL    Q QL    FP
Sbjct: 117 HAMGLGADVIATGHYAQVRENPLKPGLFQ--LMKADDGSKDQSYFLHRLNQAQLSKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250
           LG M K  VR++AR  GL  A+K DS  ICF+ +  + + + +    +  E G+I    G
Sbjct: 175 LGQMLKREVREIARGAGLINAEKKDSTGICFIGERPFQEFLSKY---LPREPGEIKTPEG 231

Query: 251 QILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHR- 302
           + +G+H G++ YT+GQR+GL +     + GEP FV   D  ++ +IV  G +  L ++  
Sbjct: 232 KTVGKHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAAKDMVANELIVVQGHQHPLLLNDG 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           +   ++ W+ D    +  +  +    K R  Q   P  + R   D V + F + +  +  
Sbjct: 292 LKASQLTWIDD----EEPITNWVYDAKTRYRQPDAPCEIDRLTKDEVEIKFGQKQWAITP 347

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ V Y S+      LGGGII+
Sbjct: 348 GQSAVVYESNV----CLGGGIIT 366


>gi|167920433|ref|ZP_02507524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei BCC215]
 gi|237813753|ref|YP_002898204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei MSHR346]
 gi|254180696|ref|ZP_04887294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1655]
 gi|184211235|gb|EDU08278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1655]
 gi|237503455|gb|ACQ95773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei MSHR346]
          Length = 383

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 180/377 (47%), Gaps = 30/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y 
Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350

Query: 370 SDSNEARVLGGGIISGS 386
            D      LGGGII  +
Sbjct: 351 GDV----CLGGGIIESA 363


>gi|269303316|gb|ACZ33416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 361

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 188/368 (51%), Gaps = 27/368 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA L K+   Y VIG+ ++ +   +     G C + +D  D  RVC 
Sbjct: 5   VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNW---EEDSEGGLCSSTKDYEDVERVCL 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + +R  V   F   Y+ G TP P + CNR +KF  L    ++LG D L
Sbjct: 62  QLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDYL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +     +   + R  D ++DQSYFL  T +  L ++ FPLG+M K  VR
Sbjct: 122 ATGHYCRLNTEL-----QETQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A +  L  A+K DS  ICF+ +  + + +++        G+I+  +  +I+G+H G  
Sbjct: 177 AIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPNKT--GNIIDWDTKEIVGQHQGAH 234

Query: 261 NYTIGQRRGLGVAMGE-PLFVV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLF 316
            YTIGQRRGL +   E P +VV   +++NS  ++ G     L +  +  RE+NW      
Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWF----- 289

Query: 317 EDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 G  C  K+R  S D        +DD V V F +    V  GQ   FY  D+   
Sbjct: 290 -TPPKSGCHCSAKVRYRSPDEACTIDYSSDDEVKVRFSQPVKAVTPGQTIAFYQGDT--- 345

Query: 376 RVLGGGII 383
             LG G+I
Sbjct: 346 -CLGSGVI 352


>gi|29840118|ref|NP_829224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila caviae GPIC]
 gi|33301704|sp|Q820E9|MNMA_CHLCV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29834466|gb|AAP05102.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila caviae GPIC]
          Length = 360

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 191/372 (51%), Gaps = 28/372 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVVAMSGGVDSSVVA LLK    Y VIG+ ++ +    +    G C   +D  D  RV  
Sbjct: 5   VVVAMSGGVDSSVVAYLLKTTTPYKVIGLFMKNWEEEDSD---GLCSTAKDYEDVERVAG 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + +R  V   F   Y+ G TP P V CNR +KF  L    R+LG D L
Sbjct: 62  QLDIPYYTVSFAKEYRERVFSRFLREYSKGYTPNPDVLCNREIKFDLLQRKVRELGGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   RL    +G   R + R +D ++DQSYFL  T ++ L ++ FPLG M K  VR
Sbjct: 122 ATGHYC--RLSSAAEG---RHLLRGLDPQKDQSYFLCGTRRESLDNVLFPLGGMTKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260
            +A +  L  A K DS  ICF+ +  +   +++    +  EGDIV  + Q ++GRH G  
Sbjct: 177 AIAEQARLATAQKRDSTGICFIGKRPFKSFLEKFVPNV--EGDIVDYDSQKVVGRHEGAH 234

Query: 261 NYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREINWLGDGLF 316
            YTIGQRRGL +   E P +VV   ++KN   ++ G    L     +  +E+NW    + 
Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTAKELNWF---VS 291

Query: 317 EDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +++    +C  K+  RS  +   +     D  V V F      +  GQ   FY  +   
Sbjct: 292 PESIT---RCSAKVRYRSEDEECEILHSDEDSEVRVRFSSPVKAITPGQTIAFYDGE--- 345

Query: 375 ARVLGGGIISGS 386
            + LGGG+I  S
Sbjct: 346 -KCLGGGVIEVS 356


>gi|170781459|ref|YP_001709791.1| tRNA-specific 2-thiouridylase MnmA [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189036220|sp|B0RGA6|MNMA_CLAMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169156027|emb|CAQ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 397

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 184/371 (49%), Gaps = 26/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G+DV GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVDAGHDVTGVHLAL-SRMPGTLRTGSRGCCTVEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADLLGIPFYVWDFSERFAADVVDDFVAEYQAGRTPNPCMRCNERIKFAALLEKALDLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY  + +  G DG+    + R     +DQSY L   T +Q+    FPLG    K
Sbjct: 120 DAVCTGHY--ADVLPGPDGQPE--LHRAAAWAKDQSYVLGVLTAEQIAHSYFPLGSTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256
             VR  A   G+ +A K DS DICF+  G     +  R+    A  GDI+   G  +G H
Sbjct: 176 AEVRAEAAARGIQVAQKPDSHDICFIPDGDTRGWLADRVG---AEPGDILDGEGNAIGTH 232

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +T+GQR+GL +      G P FV+ +    + V+VGP+E+L +  I      W G
Sbjct: 233 QGAAAFTVGQRKGLAIGTPAPDGRPRFVLEIRPKDNTVVVGPQEALAIREIAGSSYTWAG 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP----VFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
                      F C V+IR+  DPVP    V V      + +       GVA GQ  V Y
Sbjct: 293 TPPTRPD--QPFDCDVQIRAHADPVPARAAVSVVDGSMQLVITPRDPLHGVAPGQTAVVY 350

Query: 369 TSDSNEARVLG 379
                  RVLG
Sbjct: 351 AG----TRVLG 357


>gi|161936317|ref|YP_129360.2| tRNA-specific 2-thiouridylase MnmA [Photobacterium profundum SS9]
          Length = 371

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 205/378 (54%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW---EEDDNEEYCSAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R R +   +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYTR-RSFPTAEGEKPK-MLRGVDSNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R +A E  L  A K DS  ICF+ + K+ + + +     A  G I   + G+++G H G+
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIGEHQGL 240

Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           + +T+GQR+GL       G  + +  +VV  D   + +IVG     PR  L+ + +   +
Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPR--LKSNGLVASQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +   C VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 299 LDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY   SNE   LGGGII 
Sbjct: 355 FY---SNEI-CLGGGIIE 368


>gi|319946006|ref|ZP_08020255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus australis ATCC 700641]
 gi|319747814|gb|EFW00059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus australis ATCC 700641]
          Length = 373

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 197/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     E+L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQVHFTRE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVTFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGKV 369


>gi|15902166|ref|NP_357716.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae R6]
 gi|15457661|gb|AAK98926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae R6]
          Length = 391

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 199/395 (50%), Gaps = 38/395 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 17  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 73  DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG +KK  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 189 LGHLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG           SL
Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306

Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           E  +++  RE+        E+  ++   C  K R  Q    V V    D   V F + + 
Sbjct: 307 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            +  GQA VFY  +      LGGG+I  + R   V
Sbjct: 357 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 387


>gi|260772624|ref|ZP_05881540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio metschnikovii CIP 69.14]
 gi|260611763|gb|EEX36966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio metschnikovii CIP 69.14]
          Length = 372

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 193/372 (51%), Gaps = 26/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +        +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIYLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R R +     K +  M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVR-RTFPTQGEKPQ--MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GL +        +P +V   D   + +I         L+   +   +++W+ 
Sbjct: 244 YHTLGQRKGLHIGGLKDGSEQPWYVAEKDLQRNVLIAVQGADHPLLKSQGLVASQLHWVS 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  + +  +C VK R  Q D     +  ++  + V F++ ++ V  GQ+ VFY  +
Sbjct: 304 ----RQTITEPTRCTVKTRYRQTDIACTIIPLDEQNIKVMFDEPQIAVTPGQSAVFYQGE 359

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 360 V----CLGGGII 367


>gi|81615317|sp|Q6LT18|MNMA_PHOPR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46912768|emb|CAG19558.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum SS9]
          Length = 377

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 205/378 (54%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 14  KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW---EEDDNEEYCSAAEDLADAQAVCD 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 71  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 130

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R R +   +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 131 IAMGHYTR-RSFPTAEGEKPK-MLRGVDSNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 188

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R +A E  L  A K DS  ICF+ + K+ + + +     A  G I   + G+++G H G+
Sbjct: 189 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIGEHQGL 246

Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           + +T+GQR+GL       G  + +  +VV  D   + +IVG     PR  L+ + +   +
Sbjct: 247 MYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPR--LKSNGLVASQ 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +   C VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 305 LDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 360

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY   SNE   LGGGII 
Sbjct: 361 FY---SNEI-CLGGGIIE 374


>gi|145639770|ref|ZP_01795372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittII]
 gi|145271138|gb|EDK11053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittII]
 gi|309750410|gb|ADO80394.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Haemophilus influenzae R2866]
          Length = 418

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 208/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 61  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404

Query: 370 SDSNEARVLGGGIIS 384
            ++     LGGGII+
Sbjct: 405 GEA----CLGGGIIA 415


>gi|302879502|ref|YP_003848066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gallionella capsiferriformans ES-2]
 gi|302582291|gb|ADL56302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gallionella capsiferriformans ES-2]
          Length = 366

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 190/379 (50%), Gaps = 27/379 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ +     S+    C + QD+ DA  
Sbjct: 3   KNKRVVVGMSGGVDSSVTALLLKQQGYDVIGLFMKNWEDDDNSEY---CSSRQDLLDAVS 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V DTI +     ++ + +++ V   F   Y +G TP P + CN  +KF   L    +LGA
Sbjct: 60  VADTIGIPIEAVNFAKEYKDRVFSAFLREYQSGRTPNPDILCNAEIKFKAFLDHAIELGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY + R     DG  +  + +  D  +DQSYFL    Q QL    FPLG + K 
Sbjct: 120 DTIATGHYAQVREV---DGLFQ--LLKATDASKDQSYFLHRLNQAQLSRAMFPLGRLLKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A + GL    K DS  ICF+ +  + + +          G++    G+ +GRH G
Sbjct: 175 EIRKIAEQHGLCNFAKKDSTGICFIGERPFREFLSGYLP--TQPGEMRTPEGKRVGRHIG 232

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           +  YT+GQR+GLG+     + GEP FV   D  ++R+IV       +L  H +   + +W
Sbjct: 233 LSFYTLGQRQGLGIGGEKNSSGEPWFVAAKDMENNRLIVVQGHDHPALLSHTLTALDAHW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +       A         K R  Q   P  F +++ D   + F++ +  V  GQ+ V Y 
Sbjct: 293 ISG----SAPKTNHPYAAKTRYRQADAPCHFTEQSGDQCSIAFDQPQWAVTPGQSVVLYE 348

Query: 370 SDSNEARVLGGGIISGSKR 388
            +      LGG II   +R
Sbjct: 349 GEV----CLGGAIIEAGQR 363


>gi|255320585|ref|ZP_05361763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262378583|ref|ZP_06071740.1| tRNA methyl transferase [Acinetobacter radioresistens SH164]
 gi|255302347|gb|EET81586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262299868|gb|EEY87780.1| tRNA methyl transferase [Acinetobacter radioresistens SH164]
          Length = 377

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L    +LGAD +
Sbjct: 61  RIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVKLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGETKYNSQGEAYAELLRGVDTNKDQTYFLHAVHGREINKTLFPVGEIEKPQV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ + ++ D +K+     A  G IV  +G+ +G H+G++
Sbjct: 181 RKIAEELGLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDDGKEVGEHHGLM 238

Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT          GL  A     FV+Y D   +R++VG       ++   ++   I+W+ 
Sbjct: 239 YYTLGQRGGIGIGGLKGAAEGAWFVLYKDIAGNRLVVGQGHEHPLMQSTILWSEAIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVFYT 369
               ++    G +C  K R  Q      V ++D    GV V+F+  +  V  GQ+ VFY+
Sbjct: 299 GE--QEIPASGLRCTAKTRYRQADQDCTVYKDDSSTQGVRVEFDDPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 GEV----CLGGGVI 366


>gi|260583885|ref|ZP_05851633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella elegans ATCC 700633]
 gi|260158511|gb|EEW93579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella elegans ATCC 700633]
          Length = 374

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 197/382 (51%), Gaps = 37/382 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +++RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   NKENIRVIVGMSGGVDSSVTALLLKQAGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    QL
Sbjct: 59  AAVAEQIGIPYYSVNFEKEYWDRVFEYFLKEYRLGRTPNPDVMCNKEVKFQAFLEYALQL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +A GHY  +R+   ++G  R  + R +D  +DQ+YFL    QQQL    FP+G ++
Sbjct: 119 GADYVAMGHY--ARVEKDENGVVR--LLRGVDNNKDQTYFLSQLNQQQLSKAMFPIGHLE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E  L  A K DS  +CF+ +  + + +       A  G +V L+G++ G H
Sbjct: 175 KKEVRKIAEEFDLATAKKKDSTGVCFIGERNFNEFLSHYLP--AKPGKMVTLDGEVKGDH 232

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G++ YTIGQR+GLG+       +P FVV  D +++ + VG               N   
Sbjct: 233 AGLMYYTIGQRQGLGIGGGGKTNDPWFVVGKDLSTNTLYVGQG---------FHHPNLYS 283

Query: 313 DGLF--------EDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVDFEKSEVGVAS 361
           D LF        ++   + F+C  K R  Q       VF + +     V FE+    +  
Sbjct: 284 DSLFATDLQFNTDEEKPNEFECTAKFRYRQQDTKVRVVFQEDDKTKAMVYFEEPVRAITP 343

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQA VFY  D      LGGGII
Sbjct: 344 GQAVVFYDGDI----CLGGGII 361


>gi|148827312|ref|YP_001292065.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae PittGG]
 gi|205816853|sp|A5UFX6|MNMA_HAEIG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148718554|gb|ABQ99681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittGG]
          Length = 385

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 206/375 (54%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +           C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDDDTD-YCTAAADLADAQAVCD 84

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 85  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 144

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 145 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 199

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 200 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 257

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 258 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 315

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 316 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 371

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 372 GEV----CLGGGIIA 382


>gi|329123820|ref|ZP_08252378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|327469307|gb|EGF14778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 418

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 61  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+    FP+G ++K  V
Sbjct: 178 IATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGKIEKPIV 232

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 405 GEV----CLGGGIIA 415


>gi|15835177|ref|NP_296936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia muridarum Nigg]
 gi|7190601|gb|AAF39399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia muridarum Nigg]
          Length = 373

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 188/369 (50%), Gaps = 29/369 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ +  +  +   G C A +D  D  ++ +
Sbjct: 20  VIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQIAE 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   Y  G TP P V CNR +KF  L    R+L  D L
Sbjct: 77  QLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 136

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG     + R +D  +DQSYFL  T ++ L ++ FPLG M K  VR
Sbjct: 137 ATGHYCRG----GLDGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTEVR 189

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260
            LA E GL  A K DS  ICF+ +  +   +++        GDIV  + Q ++G H G  
Sbjct: 190 QLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNSP--GDIVDFDTQKVVGCHEGAH 247

Query: 261 NYTIGQRRGLGV-AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGDGLF 316
            YTIGQRRGL V  M +P +V+  D  KN   ++ G    L   + +  +E+NW      
Sbjct: 248 YYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWF----- 302

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
              +     C  K+R         V   +DG V V F+     V  GQ   FY  D    
Sbjct: 303 -VPLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV--- 358

Query: 376 RVLGGGIIS 384
             LGGG+I+
Sbjct: 359 -CLGGGVIA 366


>gi|114563431|ref|YP_750944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella frigidimarina NCIMB 400]
 gi|122299537|sp|Q081F9|MNMA_SHEFN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114334724|gb|ABI72106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella frigidimarina NCIMB 400]
          Length = 372

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 29/385 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           + SL+   N K  +V+V MSGGVDSSV A LL + G++V G+ ++ +      +    C 
Sbjct: 1   MTSLNPTSNGK--KVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMKNWEEDDTDEY---CA 55

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF  
Sbjct: 56  AADDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKA 115

Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L      L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+  
Sbjct: 116 FLEFADDILDADYIAMGHYVRRR----DNSDGSVEMLRGVDGNKDQSYFLYTLSHEQVAR 171

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+G+++K  VR++A+++GL   DK DS  ICF+ + K+ D +       A  GDI  
Sbjct: 172 SLFPVGELEKHQVREIAQKLGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIET 229

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLE 299
             G+++G H G++ +T+GQR+GLG+     +  +P +VV  D   + +IV   G    L 
Sbjct: 230 SEGEVIGTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVAQGGNHPRLM 289

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVG 358
              + + +++W+          +     VK R  Q  V   +  +D D + V F++    
Sbjct: 290 STGMTVNQLHWVD----RTGPANNSTITVKTRYRQRDVGCTLTYDDADNITVMFDEPVAA 345

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           V  GQ+ VFY  D      LGGGII
Sbjct: 346 VTPGQSAVFYDGDI----CLGGGII 366


>gi|115350645|ref|YP_772484.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria AMMD]
 gi|122323996|sp|Q0BI73|MNMA_BURCM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115280633|gb|ABI86150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria AMMD]
          Length = 384

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 183/371 (49%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   DGF C  K R  Q D    F + + +   + F+ ++  V  GQ+ V Y  + 
Sbjct: 295 ----EPPADGFSCGAKTRYRQADAACSFGRADGERFSLAFDDAQWAVTPGQSAVLYDGEI 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|323165641|gb|EFZ51428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella sonnei 53G]
          Length = 357

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 28/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD +ATGH
Sbjct: 58  LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A 
Sbjct: 118 YVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++GL  A K DS  ICF+ + K+ + + R   G    G I+ ++G  +G H G++ +T+G
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQP--GKIITVDGDEIGEHQGLMYHTLG 230

Query: 266 QRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317
           QR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+    F 
Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFT 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY    N   
Sbjct: 291 GTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY----NGEV 342

Query: 377 VLGGGIIS 384
            LGGGII 
Sbjct: 343 CLGGGIIE 350


>gi|22538278|ref|NP_689129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 2603V/R]
 gi|25012138|ref|NP_736533.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae
           NEM316]
 gi|76798859|ref|ZP_00781068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 18RS21]
 gi|77406508|ref|ZP_00783561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae H36B]
 gi|77408912|ref|ZP_00785637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae COH1]
 gi|54039756|sp|P66979|MNMA_STRA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54042260|sp|P66978|MNMA_STRA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22535193|gb|AAN01002.1|AE014289_2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 2603V/R]
 gi|24413682|emb|CAD47762.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585782|gb|EAO62331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 18RS21]
 gi|77172503|gb|EAO75647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae COH1]
 gi|77174880|gb|EAO77696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae H36B]
          Length = 373

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 199/383 (51%), Gaps = 29/383 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 6   NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H G+
Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI++ 
Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296

Query: 312 GDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            D      + + FK  C  K R  Q    V V    +   V F+  +  +  GQA VFY 
Sbjct: 297 RD------MPNEFKLECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY- 349

Query: 370 SDSNEARVLGGGIISGSKRSDAV 392
              NE   LGGG+I  + R D +
Sbjct: 350 ---NEQECLGGGMIDQAYRDDKI 369


>gi|237743285|ref|ZP_04573766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229433064|gb|EEO43276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 343

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 22/362 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VCD
Sbjct: 3   KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +   + +
Sbjct: 53  KLEMIHKVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKTEYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATG+Y  S  Y  D  K   ++     + +DQSY L+  +  +L  L FPL D  K+ +R
Sbjct: 113 ATGYYT-SVEYSKDFDK--YLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEIR 169

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL+I +K DSQ ICF ++G Y + +K       + G+ V  +G ILG H G   
Sbjct: 170 EIALKIGLEIHNKKDSQGICFAEEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQL 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L    +      E   +
Sbjct: 229 YTIGQRRGLGINLSKPVFITEIRPLTNEIVLGEFSELFTDKVELMNSKF----SVEYEKL 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +  +   + R S       + ++ + +Y  + +     A GQ  VF+     +  V+GGG
Sbjct: 285 ENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVVGGG 340

Query: 382 II 383
            I
Sbjct: 341 EI 342


>gi|291613422|ref|YP_003523579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583534|gb|ADE11192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
          Length = 361

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 195/378 (51%), Gaps = 33/378 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + + VVV MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C + QD+ DA  
Sbjct: 5   RKITVVVGMSGGVDSSVTALLLKEQGYEVIGLFMKNWEDDDDSEY---CSSRQDLIDAVS 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V DTI +     ++ + +++ V   F   Y AG TP P + CN  +KF   L    +LGA
Sbjct: 62  VADTIGIPIEAVNFAKEYKDRVFNYFLREYEAGRTPNPDILCNSEIKFKAFLDHAIRLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY + R     DG  +  + +  D  +DQSYFL    Q QL    FPLGD+ K 
Sbjct: 122 EKIATGHYAKVR---EQDGAFQ--LLKADDDSKDQSYFLHRLNQHQLSKSMFPLGDIPKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++AR+  L  A K DS  ICF+ +  + + + R        GD+V   G+++G+H G
Sbjct: 177 KVREIARQHNLSNAAKKDSTGICFIGERPFREFLNRYLP--TKPGDMVTPEGKVMGQHMG 234

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR------E 307
           +  YT GQR+GLG+     + GEP FV   D  ++R++V        H + L+      +
Sbjct: 235 LSFYTYGQRQGLGIGGGKDSSGEPWFVAGKDMANNRLLVVQGHD---HPLLLKPQLDALD 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366
           ++W+GD    D   D      K R  Q      +  N  D  +  F++++  V  GQ+ V
Sbjct: 292 MHWIGDHA-PDTTRD---YAAKTRYRQQDAACRISINAPDTAHFSFDEAQWAVTPGQSVV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
            Y  +      LGGGII+
Sbjct: 348 AYDGEI----CLGGGIIA 361


>gi|270285349|ref|ZP_06194743.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Nigg]
 gi|270289365|ref|ZP_06195667.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Weiss]
 gi|301336746|ref|ZP_07224948.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum MopnTet14]
 gi|14195289|sp|Q9PKA7|MNMA_CHLMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 358

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 188/369 (50%), Gaps = 29/369 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ +  +  +   G C A +D  D  ++ +
Sbjct: 5   VIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + ++  V   F   Y  G TP P V CNR +KF  L    R+L  D L
Sbjct: 62  QLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  L    DG     + R +D  +DQSYFL  T ++ L ++ FPLG M K  VR
Sbjct: 122 ATGHYCRGGL----DGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260
            LA E GL  A K DS  ICF+ +  +   +++        GDIV  + Q ++G H G  
Sbjct: 175 QLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNSP--GDIVDFDTQKVVGCHEGAH 232

Query: 261 NYTIGQRRGLGV-AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGDGLF 316
            YTIGQRRGL V  M +P +V+  D  KN   ++ G    L   + +  +E+NW      
Sbjct: 233 YYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWF----- 287

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
              +     C  K+R         V   +DG V V F+     V  GQ   FY  D    
Sbjct: 288 -VPLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV--- 343

Query: 376 RVLGGGIIS 384
             LGGG+I+
Sbjct: 344 -CLGGGVIA 351


>gi|327405404|ref|YP_004346242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fluviicola taffensis DSM 16823]
 gi|327320912|gb|AEA45404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fluviicola taffensis DSM 16823]
          Length = 392

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 199/399 (49%), Gaps = 46/399 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LL+++GY+VIG+ ++ ++    +     C    D  DA  + +
Sbjct: 3   RVVVGLSGGVDSSVTAHLLQQEGYEVIGLFMRNWHDETVT-LSNDCPWIDDSNDALLIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V D  + ++  ++    + Y AG TP P V CNR +KF   L    +LGAD +
Sbjct: 62  QLGIPFQVLDLSKEYKERIVDYMFAEYEAGRTPNPDVLCNREIKFDVFLKAAMELGADFV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      +DG     +   +D  +DQSYFL   +Q QL    FP+G+++K  VR
Sbjct: 122 ATGHYCRK--ITTEDGIHH--LLTGLDPNKDQSYFLCQLSQDQLSKALFPIGNLQKSEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFV---------QQ------GKYFDVVKRINAGIALEGDIV 246
            +A+E+GL  ADK DSQ +CFV         QQ      GK  ++ +  N  +      V
Sbjct: 178 AIAKEIGLVTADKKDSQGLCFVGKISLPEFLQQKLEVKYGKIIEINELDNQFLNYSTIPV 237

Query: 247 HLNGQI---------------LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRV 290
           +LN  I               + +H G   YTIGQR+GL +     P FV+ +D  ++ V
Sbjct: 238 NLNNVIELSKEFIYSPDMGIEVEKHIGAHYYTIGQRKGLNIGGRPNPSFVIGIDTTTNTV 297

Query: 291 IVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             G     P  +    +I   E++W+ +  FE  + D  +  ++IR  Q      + R  
Sbjct: 298 YSGQKDEHPGLNKWALKIETSEMHWI-NPTFEMNIGDSKEFDIRIRYRQSFQKGTLTRLQ 356

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           DG Y+ F + + G+  GQ   FY    NE  ++G GIIS
Sbjct: 357 DGFYILFNQKQRGITPGQFAAFY----NEDELIGSGIIS 391


>gi|326561491|gb|EGE11835.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 46P47B1]
 gi|326566712|gb|EGE16851.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 103P14B1]
 gi|326571429|gb|EGE21444.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC7]
 gi|326576626|gb|EGE26533.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 101P30B1]
          Length = 392

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 208/389 (53%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+   A +    GF+C  K R   S QD     +    D V V F+ ++ 
Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|53804157|ref|YP_114223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylococcus capsulatus str. Bath]
 gi|81681831|sp|Q607H5|MNMA_METCA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53757918|gb|AAU92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylococcus capsulatus str. Bath]
          Length = 371

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 41/390 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VVV MSGGVDSSV A LL R GY V G+ ++ +     ++    C A QD  DA++VC+
Sbjct: 4   HVVVGMSGGVDSSVTALLLLRQGYRVSGLFMKNWEEDDGTE---YCTAAQDFADAKQVCE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  +  ++   + + V   F S Y AG TP P + CN+ +KF   L     LGAD++
Sbjct: 61  RLGVELHTVNFAAEYWDEVFEVFLSEYRAGRTPNPDILCNKQIKFRAFLDYAEDLGADLI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY R    V ++  R +++ +  D  +DQSYFL+   Q+QL    FPLG ++K  VR
Sbjct: 121 AMGHYAR----VAEEEGRLQLL-KGCDPGKDQSYFLYTLQQEQLARTLFPLGGLRKTEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA   G     K DS  ICF+ + ++ D + R     A  GDI    G +LGRH+G++ 
Sbjct: 176 ALAAGAGFANDAKKDSTGICFIGERRFKDFLARYLP--ARPGDIRTPEGVLLGRHDGLMY 233

Query: 262 YTIGQRRGLGV----AMG-EPLFVVYLDKNSSR--VIVGPRESLEVHRIYLRE------I 308
           YT+GQR GLG+    A G EP +V  LDK+ +R  ++VG       H +  R+      +
Sbjct: 234 YTLGQRSGLGIGGTRAGGQEPWYV--LDKDLARNVLVVGQGHD---HPLLYRDGLLASRL 288

Query: 309 NWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           +W+ G G     ++   +C  K R  Q      ++   +D + V F + +  V  GQ+ V
Sbjct: 289 HWVDGAGPAPGEIL---RCAAKTRYRQSDQDCRIRLIGEDRLEVVFAQPQRAVTPGQSVV 345

Query: 367 FYTSDSNEARVLGGGII----SGSKRSDAV 392
           FY  D      LGGG+I    +   R+DA 
Sbjct: 346 FYQDDC----CLGGGVIDLTFNADSRADAA 371


>gi|32490853|ref|NP_871107.1| hypothetical protein WGLp104 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173418|sp|Q8D397|MNMA_WIGBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|25166059|dbj|BAC24250.1| ycfB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 368

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++A+SGGVDSSV A  LK+ GY V GV ++ +    +S +   C   +D+ DA+ 
Sbjct: 3   KKKKVIIAISGGVDSSVSAWFLKKSGYHVEGVFMKNWEEINSSIK---CTFKKDLKDAQI 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137
           VCD I ++  + ++ E++ N V   F   Y  G TP P + CN+ +KF   L+   +++ 
Sbjct: 60  VCDQIGININIVNFSEQYWNKVFKIFLREYKIGNTPNPDILCNKEIKFKYFLNFAIKEMQ 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R    +  +GK +  +    DL++DQSYFL     ++L    FP+G++ K
Sbjct: 120 ADYIATGHYVRK---INFNGKSQ--LFSAFDLKKDQSYFLHQINYKELSKCIFPIGNILK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++ L  + K DS  ICF+    +   +K  N      G I     + +G H 
Sbjct: 175 SKVRYIASKLNLITSKKRDSTGICFIGNKNFNKFIK--NYLHDDPGLIFSTEKKQIGTHK 232

Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREIN 309
           G++ YTIGQR+GL +        +P +VV   +DKN   V  G     L    I + E N
Sbjct: 233 GLMYYTIGQRKGLNIKKIYYNCHDPWYVVDKKIDKNYLIVSQGKNNPYLMSTSIIIIETN 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+     ++ +    KC VK R  Q+     V   D   + V F K    VA GQ  VFY
Sbjct: 293 WIDQIYLKNPI----KCMVKTRYRQNSTLCLVIPIDKKSIEVIFYKPISSVAPGQYAVFY 348

Query: 369 TSDSNEARVLGGGIISGSK 387
             D    R LGGGII   K
Sbjct: 349 LLD----RCLGGGIIKSRK 363


>gi|303260932|ref|ZP_07346881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303269624|ref|ZP_07355383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS458]
 gi|301801084|emb|CBW33752.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae INV200]
 gi|302637769|gb|EFL68255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640826|gb|EFL71214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS458]
 gi|332077431|gb|EGI87892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA41301]
          Length = 373

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|289523006|ref|ZP_06439860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503549|gb|EFD24713.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 351

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 200/378 (52%), Gaps = 37/378 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +R++ A+SGG+DSS+  +LL + G++V+G  L + +  +           +DV  AR+VC
Sbjct: 5   LRIITAISGGIDSSLALSLLAKQGHEVVGCFLVMSDGHE-----------EDVDRARKVC 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + V  Y  D  E+F++ VI+P  +SY+ G+TP PCV CN  VKF  L  +     +D 
Sbjct: 54  ELLKVPFYAIDIREKFQSEVIMPLITSYSNGKTPNPCVFCNPNVKFKTLFDLLNCYNSDF 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +++Y  D       + R  D +++QSY L+   +  L  + FPLGD+ K  V
Sbjct: 114 VATGHY--AKIYKDDLNYH---LVRGRDPKKEQSYMLYRLPKNWLSSVIFPLGDLTKAEV 168

Query: 201 RDLAREMGLDIADK-SDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHLNGQILGRHN 257
           +  ARE+  +I D   +S D+CF+++ +     +  RI+     EG I+ L G+ LG H 
Sbjct: 169 KKKAREIFGNIFDDVEESADLCFLRRDETLRDFLSSRIDVK---EGPILSLQGEFLGSHR 225

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YT+GQR GLG+  G P +V  ++ + + +IVG +E L+   I     +WL      
Sbjct: 226 GIGYYTVGQREGLGLPNG-PWYVSEINASENALIVGRKEDLQRRFIKCYSPHWL------ 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVD-FEKSEVGVASGQACVFYTSDSNEA 375
           +    G     + R    P PV      ++G  V   E    GVA GQ+ V Y       
Sbjct: 279 EGPEVGKVYSAQHRYKATPKPVALTDSGEEGFTVKALESPFWGVAPGQSLVLYDGRV--- 335

Query: 376 RVLGGGIISGSKRSDAVE 393
            V+GGGII+G   SDA E
Sbjct: 336 -VVGGGIIAGC--SDAKE 350


>gi|254253215|ref|ZP_04946533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia dolosa AUO158]
 gi|124895824|gb|EAY69704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia dolosa AUO158]
          Length = 382

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 180/371 (48%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   +G  C  K R  Q D    F     +   + F+ ++  V  GQ+ V Y  D 
Sbjct: 295 ----EPPAEGHACGAKTRYRQADAACTFAGAGGERFSLAFDDAQWAVTPGQSAVLYDGDV 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|293364413|ref|ZP_06611139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
 gi|291317259|gb|EFE57686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
          Length = 415

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 200/389 (51%), Gaps = 26/389 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYIATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 330

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D + E+  ++   C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 331 EASQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           A VFY  +      LGGG+I  + R   V
Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQV 411


>gi|261867343|ref|YP_003255265.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412675|gb|ACX82046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 383

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 214/387 (55%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N    +++  MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 12  KLTAQQLAENATK-KIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF 
Sbjct: 68  TAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFK 127

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGA+ +ATGHY+R R    DD  +   + R +D  +DQSYFL+  ++ Q+ 
Sbjct: 128 AFLEYAAEDLGANYIATGHYVRRR--GADDNAQ---LLRGLDNNKDQSYFLYTLSKTQVG 182

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 183 QSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIR 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+I+GRH+G++ +T+GQR+GLG+     A  +  +VV  D  ++ +IV       +L
Sbjct: 241 TVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHDHSAL 300

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +  ++++W+ D L    +    +C VK R  Q  VP  ++  +D+ + V F++ ++
Sbjct: 301 LSTGLIAQQLHWV-DCL---PIRAPLRCTVKTRYRQTDVPCIIEPIDDETIKVIFDEPQI 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGGII 
Sbjct: 357 AVTPGQSAVFYLDEI----CLGGGIIE 379


>gi|207721599|ref|YP_002252038.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum MolK2]
 gi|206586760|emb|CAQ17345.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum MolK2]
          Length = 370

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 183/371 (49%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I    G+ +G+H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                   +G     K R  Q   P  V    DG + + F +++  V  GQ+ V Y  D 
Sbjct: 295 ----HPPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFSEAQWAVTPGQSAVLYDGDV 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|225012689|ref|ZP_03703124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium MS024-2A]
 gi|225003222|gb|EEG41197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium MS024-2A]
          Length = 394

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 200/397 (50%), Gaps = 41/397 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++V +SGGVDSSV A LLK++GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 5   RIIVGLSGGVDSSVAAYLLKKEGYEVIGLFMKNWHDETVT-LSNECPWLEDSNDAMLVAE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  + ++  ++      Y+ G TP P V CNR +KF   L +   LGAD +
Sbjct: 64  KLGIPFQTVDLSKEYKERIVDYMFDEYSKGRTPNPDVLCNREIKFDVFLEIALSLGADYV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +   +    G     +    D  +DQSYFL    Q+QL  + FP+G ++KE VR
Sbjct: 124 ATGHYCQKTFFATPSGDHIHQLKSGADNNKDQSYFLCQLNQKQLSHVLFPIGHLQKEEVR 183

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-----------------INAGIAL-EG 243
            +A E  L  ADK DSQ +CF+ + +  D +++                 + AG      
Sbjct: 184 KIALEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLKSKKGSIIEISTDFSVYAGSETSHK 243

Query: 244 DIVH---------LNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVG 293
           D+++          +G I+G HNG   YT+GQR+GLGV    EPLFV+  + + + + VG
Sbjct: 244 DLINRAKKVRYQPTDGAIVGEHNGAHFYTVGQRKGLGVGGNVEPLFVIDTNVDDNTIYVG 303

Query: 294 P-RESLEVHRIYL----REINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347
             +E   ++R  L     +I+W+ GD           +  ++ R +     +F  + +  
Sbjct: 304 QGKEHPGLYRYALAVAQEDIHWVRGDLALRPGETLSIQARIRYRQALQKATLF--QTESA 361

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +YV F++ +  + SGQ   +Y    +E  +LG G+I+
Sbjct: 362 LYVSFDEPQSAITSGQFVAWY----HEKELLGSGVIT 394


>gi|118474553|ref|YP_892616.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886048|ref|ZP_06010087.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|205811604|sp|A0RQY3|MNMA_CAMFF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118413779|gb|ABK82199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 338

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 189/366 (51%), Gaps = 32/366 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+VA+SGGVDSS+ A  L   GY V+G  ++L++     +        +++   ++V 
Sbjct: 1   MKVLVALSGGVDSSMSAKYLLEAGYSVVGCYMKLHSKPGYHE--------ENIRKVKKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D EE F   V  PF ++Y  G TP PC  CN+ +KF  L    + LG D 
Sbjct: 53  EFLGIETHILDLEEEFNAKVYEPFVNAYKEGLTPNPCAHCNKNIKFGALWKFAQTLGCDK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      +DG    ++    DL +DQSYFL   + + L  + FPLGD  K  +
Sbjct: 113 MATGHYARI-----EDG----LIKVASDLSKDQSYFLANISPEILPYIIFPLGDKFKVDI 163

Query: 201 R--DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +          ++A + +S +ICFV+   Y D++ + +    + G +  ++G+++G+H+G
Sbjct: 164 KAAAAQIPQIAELASQKESSEICFVET-TYIDILNK-HFNTLMPGVVRDVSGKVVGKHDG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            + YTIG+R+G  V     P +V+ +D   + ++VG ++ L          N   D    
Sbjct: 222 YMRYTIGKRKGFSVDGAHSPHYVLKIDAAKNEIVVGLKDELSSFSFTTTNFNNFTDK--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
               +  +CFVKIR    P+P  V + DDG  V  + +  GVASGQ  VFY       RV
Sbjct: 279 ----NELECFVKIRYRSTPIPCLVSKLDDGATVKLKDNAGGVASGQLAVFYDEFD---RV 331

Query: 378 LGGGII 383
           L  G I
Sbjct: 332 LASGFI 337


>gi|332040942|gb|EGI77312.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC
           19624]
          Length = 386

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 195/396 (49%), Gaps = 39/396 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK+ +  RVVV +SGGVDS+V A LLK+ G+DV+G+ ++ +     ++    C +  D 
Sbjct: 1   MDKSNRGQRVVVGLSGGVDSAVTAYLLKKQGHDVVGIFMKNWEDDDDNE---YCSSNVDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L   
Sbjct: 58  VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY R RL   ++   +  + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 118 MRLGAEKIATGHYARVRL---NEKTGKHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR--------INAGIALEG-- 243
           ++ K  VR +A E+GL  A K DS  ICF+ +  + + + R        I  G  L G  
Sbjct: 175 ELHKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIQKEPGPIKDGTPLPGSP 234

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV------------AMGEPLFVVY--LDKNSSR 289
           D    +G+++G+H G+  YT+GQR+GLG+               EP FV    +DKN   
Sbjct: 235 DYERAHGRVIGKHVGLSFYTLGQRQGLGIGGIKDKGAQKGGGEHEPWFVARKDMDKNQLW 294

Query: 290 VIVGPRES-LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348
           V+ G     L+ H ++  + +W+     E  +        + R + D         D G 
Sbjct: 295 VVQGHDHPLLQSHGLHALDASWIAG---EPPLPGDLHAKARYRQA-DAACTLDHVEDSGF 350

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + F +++  V  GQ+ V Y  +      LGGGI+ 
Sbjct: 351 SLRFPEAQWAVTPGQSAVLYDGEV----CLGGGIVQ 382


>gi|116516757|ref|YP_815643.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae D39]
 gi|30173410|sp|Q8CWW0|MNMA_STRR6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122279467|sp|Q04MV1|MNMA_STRP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116077333|gb|ABJ55053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae D39]
          Length = 373

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG +KK  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLKKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|270291927|ref|ZP_06198142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M143]
 gi|270279455|gb|EFA25297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M143]
          Length = 383

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 199/395 (50%), Gaps = 38/395 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 9   LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 65  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 125 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDTGKDQTYFLSQLSQEQLQKTMFP 180

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 181 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMMTMDGR 238

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG           SL
Sbjct: 239 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 298

Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           E  +++  RE+        E+  ++   C  K R  Q    V V    D   V F + + 
Sbjct: 299 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 348

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            +  GQA VFY  +      LGGG+I  + R   V
Sbjct: 349 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 379


>gi|167553799|ref|ZP_02347544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321840|gb|EDZ09679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 368

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 208/381 (54%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQLGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|227498170|ref|ZP_03928341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832420|gb|EEH64803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces urogenitalis DSM 15434]
          Length = 399

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 166/305 (54%), Gaps = 17/305 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G++V+GV + L   R A  R GS  CC+ +D  DAR 
Sbjct: 1   MRVLAALSGGVDSAVAAARAVEAGHEVVGVHMALTRHR-AQTRSGSRGCCSIEDSADARW 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + +  YV+D  E F + V+  F S Y AG TP PCV CN  VKF  LL     +G 
Sbjct: 60  AAEILGIPFYVWDLSEEFEDRVVADFLSEYRAGRTPNPCVRCNERVKFDALLERGLAMGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           D +ATGHY  +RL  G    R        + R  D  +DQSY L  + ++ L    FPLG
Sbjct: 120 DAVATGHY--ARLTGGASSGRPGDTHDLCLSRAADAAKDQSYVLAVSGREGLSRALFPLG 177

Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           D   K +VR  A E GL +ADK DS DICFV  G     ++R       EG +V  +G++
Sbjct: 178 DAPSKAAVRAEAAERGLPVADKPDSYDICFVADGDTRGFLQRSLG--TQEGTLVSPDGEV 235

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           LG H G   +T+GQR+GLG+      G+P +V+     ++ V+VGPRE L  H I    +
Sbjct: 236 LGTHEGYFGFTVGQRKGLGLTRPAPDGQPRYVIATRPATNEVVVGPRELLSRHEIEADAL 295

Query: 309 NWLGD 313
             L D
Sbjct: 296 VLLAD 300


>gi|71274784|ref|ZP_00651072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Dixon]
 gi|71901076|ref|ZP_00683185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|170729970|ref|YP_001775403.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M12]
 gi|205828985|sp|B0U6Q7|MNMA_XYLFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71164516|gb|EAO14230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Dixon]
 gi|71729158|gb|EAO31280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|167964763|gb|ACA11773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa M12]
          Length = 379

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K+ +R
Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V   R+S  +   +LR    +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                     F C  + R  Q  +P  V V RND  + VDF +++  V  GQ+ V Y  D
Sbjct: 294 ----SPPAHTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTRTQWAVTPGQSLVLY--D 346

Query: 372 SNEARVLGGGIISGS 386
            NE   LGG +I+ +
Sbjct: 347 GNE--CLGGAVIATT 359


>gi|326561065|gb|EGE11430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 7169]
          Length = 392

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 209/389 (53%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-- 133
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 134 RQ--LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           RQ  LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 RQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+   A +    GF+C  K R   S QD     +    D V V F  ++ 
Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|323172490|gb|EFZ58127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli LT-68]
 gi|323947563|gb|EGB43567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H120]
          Length = 357

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 28/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD +ATGH
Sbjct: 58  LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A 
Sbjct: 118 YVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++ +T+G
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230

Query: 266 QRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317
           QR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+    F 
Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFT 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY    N   
Sbjct: 291 GTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY----NGEV 342

Query: 377 VLGGGIIS 384
            LGGGII 
Sbjct: 343 CLGGGIIE 350


>gi|315221594|ref|ZP_07863514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus anginosus F0211]
 gi|315189428|gb|EFU23123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus anginosus F0211]
          Length = 373

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 201/389 (51%), Gaps = 37/389 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R++    +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYARAKR--DEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 AIAEKAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+        EP FVV  D + + + VG           SL+  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I                +C  K R  Q    V V    D   V+F + +  +  GQA VF
Sbjct: 299 I----------PAEFTMECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y    +E   LGGG+I  + +   +++ +
Sbjct: 349 Y----DEEECLGGGLIDNAYKDGKLQQYI 373


>gi|254785838|ref|YP_003073267.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901]
 gi|237686421|gb|ACR13685.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901]
          Length = 367

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 28/377 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K     +V+V MSGGVDSSV A LL + GY V G+ ++ +N    ++    C A  D+ D
Sbjct: 5   KPASQTKVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWNEDDGTEY---CTAMTDLLD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  VC  + +  +  ++  ++ + V   F   Y AG TP P + CNR +KF   L    Q
Sbjct: 62  AANVCQKLGIPLHTANFATQYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFLDYAEQ 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA+ +ATGHY R+R   G     +  +C+ +D  +DQSYFL A  ++      FP+G++
Sbjct: 122 LGANYIATGHYARTRNKAG-----QTQLCKGLDGNKDQSYFLHAVEEKAFAKTLFPIGEL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR+LA    L   +K DS  ICF+ + ++ D ++      A  G IV   G+ILG 
Sbjct: 177 EKPRVRELAEAHDLVTHNKKDSTGICFIGERRFKDFLQTYLP--AQPGKIVTPEGEILGD 234

Query: 256 HNGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ YTIGQR+GLG+        +  +V   + + + +IV   G  E L    +    
Sbjct: 235 HQGLMYYTIGQRQGLGIGGIAGAHEDAWYVARKNLSDNTLIVVQGGSHELLLETALVANG 294

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+     E     GF+C+ K R  Q      +Q+ + D + V F++ +  +  GQ+ V
Sbjct: 295 MHWINQPQEE-----GFRCYAKTRYRQPDQRCTLQKVSGDTITVVFDEPQRAITPGQSIV 349

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D      LGGG+I
Sbjct: 350 LYDGDV----CLGGGVI 362


>gi|76788488|ref|YP_330692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae A909]
 gi|123601021|sp|Q3JYG1|MNMA_STRA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76563545|gb|ABA46129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae A909]
          Length = 373

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 199/383 (51%), Gaps = 29/383 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 6   NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H G+
Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI++ 
Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296

Query: 312 GDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            D      + + FK  C  K R  Q    V V    +   V F+  +  +  GQA VFY 
Sbjct: 297 RD------MPNEFKLECTAKFRYRQPDSKVKVYVKGNQARVVFDDLQRAITPGQAVVFY- 349

Query: 370 SDSNEARVLGGGIISGSKRSDAV 392
              NE   LGGG+I  + R D +
Sbjct: 350 ---NEQECLGGGMIDQAYRDDKI 369


>gi|28198570|ref|NP_778884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Temecula1]
 gi|182681251|ref|YP_001829411.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M23]
 gi|32130276|sp|Q87DM0|MNMA_XYLFT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828984|sp|B2I9X8|MNMA_XYLF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28056654|gb|AAO28533.1| tRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|182631361|gb|ACB92137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa M23]
 gi|307579701|gb|ADN63670.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 379

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K+ +R
Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V   R+S  +   +LR    +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                     F C  + R  Q  +P  V V RND  + VDF +++  V  GQ+ V Y  D
Sbjct: 294 ----SPPAPTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTRTQWAVTPGQSLVLY--D 346

Query: 372 SNEARVLGGGIISGS 386
            NE   LGG +I+ +
Sbjct: 347 GNE--CLGGAVIATT 359


>gi|311279962|ref|YP_003942193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae SCF1]
 gi|308749157|gb|ADO48909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae SCF1]
          Length = 369

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 197/375 (52%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G  +G H G++
Sbjct: 180 RKIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILVVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + V    +C VK R  Q  +P  V   DD  + V F++    V  GQ+ VFY 
Sbjct: 296 VD----REPVTGTLRCTVKTRYRQTDIPCTVTAQDDSRIEVRFDEPVAAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEV----CLGGGIIE 362


>gi|224436863|ref|ZP_03657852.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter cinaedi CCUG
           18818]
 gi|313143341|ref|ZP_07805534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter cinaedi CCUG 18818]
 gi|313128372|gb|EFR45989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter cinaedi CCUG 18818]
          Length = 346

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 191/367 (52%), Gaps = 30/367 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V + MSGGVDSS  A LL   GY+VIG+ L+L++  K  K     C         +V  
Sbjct: 3   KVALLMSGGVDSSYCAHLLLSQGYEVIGLYLKLHDKEKKHKIYIKNC--------EQVAS 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V D  E F+  V   F  SY AG+TP PC  CN  +KF   L    +LG D +
Sbjct: 55  QLGIRFEVLDLREEFKKNVYDAFVKSYKAGQTPNPCAVCNPLMKFGLGLQKADELGCDFI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + +     +G +R  + + +D  +DQSYFL+A  Q  +  + FPLG   KE V+
Sbjct: 115 ATGHYAQIKEI---NGIKR--IAKALDDTKDQSYFLYALPQSAIDRIIFPLGTFTKEEVK 169

Query: 202 DLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             A ++      +    +SQ+ICFV+   Y D++K ++  + +EG +   NG+ +G H G
Sbjct: 170 KTALKLLPFLGTLETYKESQEICFVEDS-YIDILK-LHEKVDMEGIVRDSNGKAVGTHKG 227

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+R+G  V    EP +V  ++   + +IVG +E L +  I  + +N      F+
Sbjct: 228 YMHYTIGKRKGFSVFGSHEPHYVKAINPQKNEIIVGTKEELTIDSI--QALNKSLPQAFD 285

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             V D     +K+R   +P+   +    + ++    +S  GVA GQA V Y  D     V
Sbjct: 286 GGVYD-----IKVRYRSEPLKAEINIQGEYIHAKLLESAYGVAQGQALVLYQDDC----V 336

Query: 378 LGGGIIS 384
           LGGG+I+
Sbjct: 337 LGGGVIT 343


>gi|152969695|ref|YP_001334804.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954544|gb|ABR76574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 388

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +   
Sbjct: 11  ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +K
Sbjct: 69  -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F   L    + LGAD +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+  + +Q
Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G 
Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294
           I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      P
Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
           R  L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V F+
Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +    V  GQ+ VFY  +      LGGGII 
Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|315179841|gb|ADT86755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii NCTC 11218]
          Length = 372

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 197/373 (52%), Gaps = 26/373 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      + G++ + M R +D  +DQSYFL+    +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRTF--PEHGEKPQ-MLRGLDGNKDQSYFLYTLGHEQVARSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GL +        +P +V   D   + +I         L+ + +   +++W+ 
Sbjct: 244 YHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQLHWV- 302

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D L    + +  +C VK R  Q  +   V   D+  + V F++ +V V  GQ+ VFY  +
Sbjct: 303 DRL---PMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAVFYQGE 359

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 360 V----CLGGGIIE 368


>gi|59712391|ref|YP_205167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri ES114]
 gi|71658019|sp|Q5E3W7|MNMA_VIBF1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|59480492|gb|AAW86279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri ES114]
          Length = 374

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 197/377 (52%), Gaps = 27/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124

Query: 141 LATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +A GHY+R      ++     +  M R +D  +DQSYFL+  + +Q+    FP+G+++K 
Sbjct: 125 IAMGHYVRRTFPTAEEIANGIKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVGELEKP 184

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ + K+ + + +     A  G+I    G+++G+H G
Sbjct: 185 EVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGQHQG 242

Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREI 308
           ++ +T+GQR+GL +          +P FV   D K +  + V  ++   L+   +   ++
Sbjct: 243 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGLLASQL 302

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+        +     C VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ VF
Sbjct: 303 HWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPGQSAVF 358

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LGGGII 
Sbjct: 359 YLDEV----CLGGGIIE 371


>gi|197336343|ref|YP_002156606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri MJ11]
 gi|229487426|sp|B5FG83|MNMA_VIBFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|197317833|gb|ACH67280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri MJ11]
          Length = 374

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 197/377 (52%), Gaps = 27/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124

Query: 141 LATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +A GHY+R      ++     +  M R +D  +DQSYFL+  + +Q+    FP+G+++K 
Sbjct: 125 IAMGHYVRRTFPTAEEIANGVKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVGELEKP 184

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E GL  A K DS  ICF+ + K+ + + +     A  G+I    G+++G+H G
Sbjct: 185 EVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGQHQG 242

Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREI 308
           ++ +T+GQR+GL +          +P FV   D K +  + V  ++   L+   +   ++
Sbjct: 243 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGLLASQL 302

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+        +     C VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ VF
Sbjct: 303 HWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPGQSAVF 358

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LGGGII 
Sbjct: 359 YLDEV----CLGGGIIE 371


>gi|322378091|ref|ZP_08052577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M334]
 gi|321280928|gb|EFX57942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M334]
          Length = 391

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 200/389 (51%), Gaps = 26/389 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 17  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 73  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 189 LGHLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D + E+  ++   C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 307 EASQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 362

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           A VFY  +      LGGG+I  + R   V
Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQV 387


>gi|238894182|ref|YP_002918916.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546498|dbj|BAH62849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 388

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +   
Sbjct: 11  ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVGGLFMKNWEEDDGEEY-- 68

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +K
Sbjct: 69  -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F   L    + LGAD +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+  + +Q
Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G 
Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294
           I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      P
Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
           R  L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V F+
Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +    V  GQ+ VFY  +      LGGGII 
Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|68248779|ref|YP_247891.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae
           86-028NP]
 gi|68056978|gb|AAX87231.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 86-028NP]
          Length = 397

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 40  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 96

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 97  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 156

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 157 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 211

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 212 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 269

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 270 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 327

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 328 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 383

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 384 GEV----CLGGGIIA 394


>gi|89073381|ref|ZP_01159905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium sp. SKA34]
 gi|89050868|gb|EAR56342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium sp. SKA34]
          Length = 371

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 198/378 (52%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R      +  K +  M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYTRRSFPTAEGDKPQ--MLRGVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R +A E  L  A K DS  ICF+ + K+ + + +     A  G IV  + G+ +G H G+
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIGEHQGL 240

Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           + +T+GQR+GL       G    +  +VV  D  S+ +IVG     PR  L+ + +  ++
Sbjct: 241 MYHTLGQRKGLLIGGQKGGNGHEDAWYVVDKDVKSNLLIVGQGKDHPR--LKSNGLIAKQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +   C VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 299 LHWVA----RKPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY    N    LGGGII 
Sbjct: 355 FY----NGEICLGGGIIE 368


>gi|71897609|ref|ZP_00679854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|71732512|gb|EAO34565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
          Length = 379

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K+ +R
Sbjct: 121 ATGHYARIEHY-----RQRWRLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V   R+S  +   +LR    +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                     F C  + R  Q  +P  V V RND  + VDF +++  V  GQ+ V Y  D
Sbjct: 294 ----SPPAPTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTRTQWAVTPGQSLVLY--D 346

Query: 372 SNEARVLGGGIISGS 386
            NE   LGG +I+ +
Sbjct: 347 GNE--CLGGAVIATT 359


>gi|225857998|ref|YP_002739508.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae 70585]
 gi|254811463|sp|C1CAE7|MNMA_STRP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225721738|gb|ACO17592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 70585]
          Length = 373

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|322375113|ref|ZP_08049627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C300]
 gi|321280613|gb|EFX57652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C300]
          Length = 415

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 200/389 (51%), Gaps = 26/389 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D + E+  ++   C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 331 EASQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           A VFY  +      LGGG+I  + R   V
Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQV 411


>gi|331662546|ref|ZP_08363469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA143]
 gi|331060968|gb|EGI32932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA143]
          Length = 357

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 201/368 (54%), Gaps = 28/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD +ATGH
Sbjct: 58  LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A 
Sbjct: 118 YVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++ +T+G
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230

Query: 266 QRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317
           QR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+    F 
Sbjct: 231 QRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVDREPFT 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY    N   
Sbjct: 291 GTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY----NGEV 342

Query: 377 VLGGGIIS 384
            LGGGII 
Sbjct: 343 CLGGGIIE 350


>gi|297181285|gb|ADI17477.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase
           domain-protein [uncultured beta proteobacterium
           HF0130_04F21]
          Length = 385

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 194/392 (49%), Gaps = 36/392 (9%)

Query: 8   RLN-SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           +LN  L++ K      +V+ MSGGVDSSV A LLK  G+ V+G+ ++ ++          
Sbjct: 13  KLNIKLEIIKMITKKHIVIGMSGGVDSSVAAWLLKSQGHKVVGIFMKNWDDDDTDTY--- 69

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C + QD  DA    + I +      +   +R  V   F   Y+ G TP P V CN  +KF
Sbjct: 70  CTSKQDFLDAAAASEIIGIEFDAVSFSNEYRKKVFNDFLHEYSLGRTPNPDVFCNSEIKF 129

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L  ++ LGAD++ATGHY ++   +  + +    + +  D  +DQSYFL   TQ+QL 
Sbjct: 130 KSFLHHSQNLGADLIATGHYAKTIKNINGEFE----LHKGKDQNKDQSYFLHRLTQKQLR 185

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FPLG   K+ VR LA+E+GL  A+K DS  ICF+ +  +   + +      + G + 
Sbjct: 186 YTTFPLGQYYKKDVRKLAQEIGLPNANKRDSTGICFIGERPFKVFLSKYLK--TMSGPVC 243

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----------MGEPLFVVYLDKNSSRVIVGP-R 295
             +G+I+G+H+G+  YTIGQR+GLG+              P FVV  +K  +R+IV    
Sbjct: 244 TTDGKIIGKHDGLSFYTIGQRKGLGIGGIKKSNDFEKTAAPWFVVAKEKKDNRLIVAQGH 303

Query: 296 ESLEVHRIYLREIN--WLGDGL--FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351
           ++  +    L  IN  W+      FE+         VKIR  Q      +    +  ++ 
Sbjct: 304 DNPFLMSTSLSAINPSWVKGKAPKFEEME-------VKIRYRQKTFSCILSVRSEKFFLK 356

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           F+  + GV  GQ+ V Y  +      LGGGII
Sbjct: 357 FDSPQRGVTPGQSAVLYKGE----ECLGGGII 384


>gi|145635278|ref|ZP_01790981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittAA]
 gi|205822421|sp|Q4QP16|MNMA_HAEI8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145267422|gb|EDK07423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittAA]
          Length = 383

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 370 GEV----CLGGGIIA 380


>gi|262043152|ref|ZP_06016290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259039540|gb|EEW40673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 388

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +   
Sbjct: 11  ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +K
Sbjct: 69  -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F   L    + LGAD +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+  + +Q
Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G 
Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294
           I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      P
Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
           R  L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V F+
Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +    V  GQ+ VFY  +      LGGGII 
Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|227874682|ref|ZP_03992843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844725|gb|EEJ54873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35243]
          Length = 394

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 201/399 (50%), Gaps = 36/399 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ +SGGVDS+V AA L   GYDV    ++L  S    +   +    Q + DAR+V  
Sbjct: 4   KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGENNPTA---QALADARKVAA 60

Query: 82  TINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + +     +V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++    + G 
Sbjct: 61  YLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREGF 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D +ATGHY R   ++GD  + R    R   LE+DQSY L     + L    FPL D++ K
Sbjct: 121 DYVATGHYARLD-HIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPLFDVRDK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
              R  A+  GL +A K DS DICF+  G     + R   G A  G IV  NG ++G+H 
Sbjct: 176 AETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGAVVGQHL 234

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQRRGL +      G+P +V  +D + + V VGP E+L+VH+I    INWL +
Sbjct: 235 GAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSRNVVTVGPLETLDVHQIRCGRINWLVE 294

Query: 314 GLF--EDAVVDGFKC--------------FVKIRSSQDPVPVFVQRND-DGVYVDFEKSE 356
             F  +   V G +                V+ R+   P P   + +D D + V F ++ 
Sbjct: 295 PGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTVIFPETA 354

Query: 357 V--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
              GVA GQ+ V Y  +   A+    G  S + R D  E
Sbjct: 355 TIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393


>gi|307700537|ref|ZP_07637571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris FB024-16]
 gi|307614258|gb|EFN93493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris FB024-16]
          Length = 394

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 201/399 (50%), Gaps = 36/399 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ +SGGVDS+V AA L   GYDV    ++L  S +  +   +    Q + DAR+V  
Sbjct: 4   KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESGRDEENNPTA---QALADARKVAA 60

Query: 82  TINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + +     +V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++    + G 
Sbjct: 61  YLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREGF 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D +ATGHY     ++GD  + R    R   LE+DQSY L     + L    FPL D++ K
Sbjct: 121 DYVATGHYA-CLDHIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPLFDVRDK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
              R  A+  GL +A K DS DICF+  G     + R   G A  G IV  NG ++G+H 
Sbjct: 176 AETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGAVVGQHL 234

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQRRGL +      G+P +V  +D + + V VGP E+L+VH+I    INWL +
Sbjct: 235 GAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSHNVVTVGPLETLDVHQIRCGRINWLVE 294

Query: 314 GLF--EDAVVDGFKC--------------FVKIRSSQDPVPVFVQRND-DGVYVDFEKSE 356
             F  +   V G +                V+ R+   P P   + +D D + V F ++ 
Sbjct: 295 PGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFEIDDQDRLTVIFPETA 354

Query: 357 V--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
              GVA GQ+ V Y  +   A+    G  S + R D  E
Sbjct: 355 TIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393


>gi|213052788|ref|ZP_03345666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
          Length = 374

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 203/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 13  KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 70  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+G+++K  V
Sbjct: 130 IATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  +G H G++
Sbjct: 185 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLM 242

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        +P +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 243 YHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHWVD 302

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  +   +DD + V F++    V  GQ+ VFY+ +
Sbjct: 303 REPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGE 358

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 359 V----CLGGGIIE 367


>gi|170699615|ref|ZP_02890654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria IOP40-10]
 gi|170135497|gb|EDT03786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria IOP40-10]
          Length = 384

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 182/371 (49%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   DGF C  K R  Q D    F + + +   + F  ++  V  GQ+ V Y  + 
Sbjct: 295 ----EPPADGFSCGAKTRYRQADAACSFGRGDGERFSLAFNDAQWAVTPGQSAVLYDGEI 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|311746884|ref|ZP_07720669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Algoriphagus sp. PR1]
 gi|126578570|gb|EAZ82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Algoriphagus sp. PR1]
          Length = 403

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/404 (32%), Positives = 206/404 (50%), Gaps = 49/404 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LL   GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 6   RVVVGLSGGVDSSVAAHLLLEQGYEVIGMFMKNWHDESVT-ISNECPWMEDSTDAMLVAE 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E +R  ++      Y AG TP P + CNR +KF   L   ++L AD +
Sbjct: 65  KLGIPFQAIDLSEEYRERIVDYMFGEYKAGRTPNPDILCNREIKFDIFLKAAQKLKADFV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + +  +  DGK    +    D  +DQSYFL    Q+QL    FP+G ++K  VR
Sbjct: 125 ATGHYCQ-KGEIEVDGKPVYQLLAGADPNKDQSYFLCQLDQEQLSKALFPIGHLQKPEVR 183

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV-----------------------KRINAG 238
            +A+E+ L  ADK DSQ +CF+ + +  D +                       ++I  G
Sbjct: 184 KIAKELDLITADKKDSQGLCFIGKVRLPDFLQQQLKPKKGRIIQIPEDLEIYKSQKIPVG 243

Query: 239 IALEG-DIVHL------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLD 284
           +A E  D+  L             G++LG HNG   +T+GQR+GL V   G+PLFV+  D
Sbjct: 244 VAAEDLDLEDLEAISLPLHYRPEEGKVLGEHNGAHYFTVGQRKGLNVGGTGKPLFVISTD 303

Query: 285 KNSSRVIVGPRES---LEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + +  G  E+   L  + ++++E  I+W+ + L +  V +  +   +IR  Q     
Sbjct: 304 TKENVIYTGLGETHPGLLRNGLFVKEDQIHWIREDL-KLQVGESARYKARIRYRQPLTWA 362

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + R + G++V F++++ GVASGQ   +Y  D NE+  +G G I
Sbjct: 363 TLIRKEKGLFVIFDQAQKGVASGQFVAWY--DENES--IGSGTI 402


>gi|53715285|ref|YP_101277.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81608253|sp|Q64P39|MNMA3_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|52218150|dbj|BAD50743.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Bacteroides fragilis YCH46]
          Length = 362

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +  
Sbjct: 7   RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+    +LG D +
Sbjct: 53  RMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112

Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FPLG+
Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160

Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250
             K++VRD   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V   G
Sbjct: 161 YTKQTVRDYLHEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L+   +   + N 
Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLKAEYMVAEQDNI 279

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +     ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY 
Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYE 335

Query: 370 SDSNEARVLGGGIISGSK 387
                 RVLGG  I+  +
Sbjct: 336 G----RRVLGGAFIASQR 349


>gi|322391188|ref|ZP_08064660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus peroris ATCC 700780]
 gi|321145941|gb|EFX41330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus peroris ATCC 700780]
          Length = 453

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 200/389 (51%), Gaps = 26/389 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 79  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 134

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 135 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 194

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 195 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 250

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR +A E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 251 LGHLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGR 308

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     E+L    +
Sbjct: 309 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHEALMSTSL 368

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D + E+  ++   C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 369 EASQVHFTRD-MPEEFTLE---CIAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 424

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           A VFY  +      LGGG+I  + R   V
Sbjct: 425 AVVFYDGE----ECLGGGLIDNAYRDGKV 449


>gi|307702622|ref|ZP_07639574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
 gi|307623738|gb|EFO02723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
          Length = 373

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|161486247|ref|NP_753421.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CFT073]
 gi|30173414|sp|Q8CXZ8|MNMA_ECOL6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 202/373 (54%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLCADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RAXV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+   + R     A  G I+ ++G  +G H G++
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312
            +T+GQR+GLG+        EP +VV  D +N+  ++    E   +  + L  ++++W+ 
Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
              F   +    +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY   
Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349

Query: 372 SNEARVLGGGIIS 384
            N    LGGGII 
Sbjct: 350 -NGEVCLGGGIIE 361


>gi|289168790|ref|YP_003447059.1| tRNA methyl transferase [Streptococcus mitis B6]
 gi|288908357|emb|CBJ23199.1| tRNA methyl transferase [Streptococcus mitis B6]
          Length = 373

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   DDG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVARDDDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEKAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|209519013|ref|ZP_03267821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. H160]
 gi|209500525|gb|EEA00573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. H160]
          Length = 416

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 185/375 (49%), Gaps = 31/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    +DG  R  + + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRE---NDG--RFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP F    D  ++ + V        L  H +     +W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRN---DDGVY-VDFEKSEVGVASGQACVFY 368
               +   +GF C  K R  Q D    F   +    +G++ + F+ ++  V  GQ+ V Y
Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFNAASGNASEGLFDLTFDAAQWAVTPGQSAVLY 350

Query: 369 TSDSNEARVLGGGII 383
             D      LGGGII
Sbjct: 351 DGDV----CLGGGII 361


>gi|307710241|ref|ZP_07646684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK564]
 gi|307619003|gb|EFN98136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK564]
          Length = 373

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|304372837|ref|YP_003856046.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1]
 gi|304309028|gb|ADM21508.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1]
          Length = 370

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 39/369 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S   +  KG+       C   +D  
Sbjct: 3   KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+ VC  +N+  Y  D+ + +   V   F   Y +G+TP P + CN+ +KF   L    
Sbjct: 63  DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   AD +A GHY ++     ++GK    + +  DL +DQSYFL      QL    FPL 
Sbjct: 123 KTFNADFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           ++ K  VR +A E+ L   +K DS  ICF+ + K+ D ++  N   A  GDIV ++  + 
Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQ--NYIPAQPGDIVDISKNKK 231

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +G+H GI+ +T+GQR+GLG+  M +P FVV  +     + V P+   +          WL
Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQ----------WL 281

Query: 312 ----GDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
                DG+  + +   F   K  VK R  Q+ +P  +Q  D+  + V++ +    V  GQ
Sbjct: 282 ISDKADGINLNLIETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQ 341

Query: 364 ACVFYTSDS 372
             V Y  D 
Sbjct: 342 EVVIYQEDK 350


>gi|16272139|ref|NP_438342.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae Rd KW20]
 gi|260580945|ref|ZP_05848769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae RdAW]
 gi|1074294|pir||D64144 probable ATPase HI0174 - Haemophilus influenzae (strain Rd KW20)
 gi|1573129|gb|AAC21843.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092434|gb|EEW76373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae RdAW]
          Length = 418

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 61  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 405 GEV----CLGGGIIA 415


>gi|301168825|emb|CBW28416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 10810]
          Length = 418

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 61  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 405 GEV----CLGGGIIA 415


>gi|182415638|ref|YP_001820704.1| tRNA-specific 2-thiouridylase MnmA [Opitutus terrae PB90-1]
 gi|205816897|sp|B1ZZ32|MNMA_OPITP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|177842852|gb|ACB77104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutus terrae PB90-1]
          Length = 378

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 197/391 (50%), Gaps = 38/391 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +++VAMSGGVDSSV A LLK+ GYDV+G  ++  N     +  G C   QD+ DAR
Sbjct: 2   PGAEKILVAMSGGVDSSVAALLLKQQGYDVVGAYMK--NWINEDQVIGHCPWQQDIEDAR 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   I +   V +    +R  V+      YA G TP P + CNR VKF    S  +  G
Sbjct: 60  RVATQIGIEFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKFGVFRSWAKDHG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIM---------------CRPMDLERDQSYFLFATTQ 182
              +ATGHY + R+ V  D     ++                   D  +DQSYFL   +Q
Sbjct: 120 FAAIATGHYAQ-RVEVKPDLVTPAVLGGLNADGTPASTFALLEGADKNKDQSYFLALLSQ 178

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +QL D RFP+G + K  +R +ARE GL  ADK DSQ ICF+ + K  D ++         
Sbjct: 179 EQLRDARFPIGHLPKPELRRIAREAGLATADKKDSQGICFIGEVKMQDFLRAYVPDA--P 236

Query: 243 GDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLE 299
           G IV   +G+ LG+H G+  YT+GQR+G+G+        +VV   + + R ++   +  +
Sbjct: 237 GPIVRATDGRELGQHRGLHFYTLGQRKGIGIPSNTDHEAYVVVGKRAADRALLVAFDHPD 296

Query: 300 VHRIYLREI-----NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFE 353
              ++ RE+     +W+G  +     ++G     ++R     VP+ FV  ++    + F 
Sbjct: 297 APGLFQREVRVHALSWIGKPVTTARALEG-----RVRYRDPRVPLEFVPESETTALIRFA 351

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             + G+A+GQ   FY  +    R+LGGG+ +
Sbjct: 352 APQRGLAAGQILAFYDGE----RLLGGGVYA 378


>gi|288936092|ref|YP_003440151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella variicola At-22]
 gi|290510856|ref|ZP_06550226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. 1_1_55]
 gi|288890801|gb|ADC59119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella variicola At-22]
 gi|289777572|gb|EFD85570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. 1_1_55]
          Length = 388

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +   
Sbjct: 11  ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +K
Sbjct: 69  -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F   L    + LGAD +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+  + +Q
Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G 
Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294
           I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      P
Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
           R  L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V F+
Sbjct: 301 R--LMSVGLIAQQLHWVD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +    V  GQ+ VFY  +      LGGGII 
Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|8039809|sp|P44551|MNMA_HAEIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 383

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 370 GEV----CLGGGIIA 380


>gi|322390500|ref|ZP_08064018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 903]
 gi|321142774|gb|EFX38234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 903]
          Length = 373

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 193/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTIDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASMIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352

Query: 374 EARVLGGGII 383
           E   LGGGII
Sbjct: 353 EC--LGGGII 360


>gi|304439506|ref|ZP_07399414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372014|gb|EFM25612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 355

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 24/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   VV+ +SGGVDSSV A LLK  GY+VIGV ++ ++          C A  D  D  +
Sbjct: 4   KKRTVVLGISGGVDSSVAAYLLKEQGYNVIGVFMKNWDENDEE-----CTATDDYLDVVK 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + +++ +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 59  VANALDIKYYTVNFEKEYWDTVFTYFLNEYKKGRTPNPDVMCNQNIKFKAFLDFALKLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R +   G        + R +D  +DQSYFL    ++ L    FP+GD+KKE
Sbjct: 119 DYIAMGHYARVKHENG-----HSYLLRGVDENKDQSYFLSRVKEEALKKTIFPIGDIKKE 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+ L  A K DS  +CF+ +  +   + +        G IV   G +LG H+G
Sbjct: 174 RVREIAEELNLATAKKKDSTGVCFIGERDFNKFLDKF--LFTKPGKIVDEAGNVLGEHSG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           +++YTIGQR+     GV  GEP FV   DKN  +  +   + ++   +Y  E  ++ +  
Sbjct: 232 LMHYTIGQRKGIGIGGVGTGEPFFVA--DKNLEKNELIVAQGVDNPILYRDEF-YVEEPF 288

Query: 316 FEDAVVD-GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           F +   D    C  KIR     V + V + +D+ + V  EK   GV  GQ  VFY+ +  
Sbjct: 289 FINGTPDYPLNCTGKIRYRAPDVGMVVTKIDDETLKVKLEKPLKGVTPGQIAVFYSGEI- 347

Query: 374 EARVLGGGIIS 384
               LG GII 
Sbjct: 348 ---CLGSGIIK 355


>gi|269977689|ref|ZP_06184653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris 28-1]
 gi|269934117|gb|EEZ90687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris 28-1]
          Length = 394

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 198/405 (48%), Gaps = 48/405 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ +SGGVDS+V AA L   GYDV    ++L  S          C G+D   A+ + D
Sbjct: 4   KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESD---------CDGEDNPTAQALAD 54

Query: 82  TINVSHY---------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              V+ Y         V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++  
Sbjct: 55  ARKVAAYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVER 114

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G D +ATGHY     ++GD  + R    R   LE+DQSY L     + L    FPL
Sbjct: 115 ALREGFDYVATGHYA-CLDHIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPL 169

Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
            D++ K   R  A+  GL +A K DS DICF+  G     + R   G A  G IV  NG 
Sbjct: 170 FDVRDKAETRSEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGA 228

Query: 252 ILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+H G   YT+GQRRGL +      G+P +V  +D N + V VGP E+L+VH+I    
Sbjct: 229 VVGQHLGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGR 288

Query: 308 INWLGDGLF--EDAVVDG--------------FKCFVKIRSSQDPVPVFVQRND-DGVYV 350
           INWL +  F  +   V G                  V+ R+   P P   + +D D + V
Sbjct: 289 INWLVEPGFGRQLLTVSGQESREAPHETKETEMPLTVQFRAHSHPEPATFKIDDQDRLTV 348

Query: 351 DFEKSEV--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            F ++    GVA GQ+ V Y  +   A+    G  S + R D  E
Sbjct: 349 IFPETATIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393


>gi|296112822|ref|YP_003626760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moraxella catarrhalis RH4]
 gi|295920516|gb|ADG60867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moraxella catarrhalis RH4]
          Length = 392

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+   A +    GF+C  K R   S QD     +    D V V F  ++ 
Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|229845165|ref|ZP_04465299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 6P18H1]
 gi|229811876|gb|EEP47571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 6P18H1]
          Length = 383

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLCADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++G+I+GRH+G++
Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 370 DEV----CLGGGIIA 380


>gi|90413208|ref|ZP_01221203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum 3TCK]
 gi|90325760|gb|EAS42218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum 3TCK]
          Length = 371

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 204/378 (53%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW---EEDDNEEYCSAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R R +   +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYTR-RSFPTAEGEKPK-MLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R +A E  L  A K DS  ICF+ + K+ + + +     A  G I   + G+++G H G+
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIGEHQGL 240

Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           + +T+GQR+GL       G  + +  +VV  D   + +IVG     PR  L+ + +   +
Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPR--LKSNGLVASQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +     C VK R  Q+ +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 299 LDWVD----RQPIRQPMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY   SNE   LGGGII 
Sbjct: 355 FY---SNEI-CLGGGIIE 368


>gi|145633601|ref|ZP_01789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 3655]
 gi|229847290|ref|ZP_04467393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 7P49H1]
 gi|144985807|gb|EDJ92421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 3655]
 gi|229809833|gb|EEP45556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 7P49H1]
          Length = 383

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLCADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++G+I+GRH+G++
Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 370 DEV----CLGGGIIA 380


>gi|322388413|ref|ZP_08062016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|321140726|gb|EFX36228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis ATCC 700779]
          Length = 373

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVLRDEDGVVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGKV 369


>gi|293390912|ref|ZP_06635246.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951446|gb|EFE01565.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 383

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 214/387 (55%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N    +++  MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 12  KLTAQQLAENATK-KIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 67

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF 
Sbjct: 68  TAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFK 127

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGA+ +ATGHY+R R    DD  +   + R +D  +DQSYFL+  ++ Q+ 
Sbjct: 128 AFLEYAAEDLGANYIATGHYVRRR--GADDNAQ---LLRGLDNNKDQSYFLYTLSKIQVG 182

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 183 QSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIR 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESL 298
            ++G+I+GRH+G++ +T+GQR+GLG+     A  +  +VV  D  ++ +IV       +L
Sbjct: 241 TVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHEHSAL 300

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +  ++++W+ D L    +    +C VK R  Q  VP  ++  +D+ + V F++ ++
Sbjct: 301 LSTGLIAQQLHWV-DRL---PIRAPLRCTVKTRYRQTDVPCTIEPIDDETIKVIFDEPQI 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGGII 
Sbjct: 357 AVTPGQSAVFYLDEI----CLGGGIIE 379


>gi|152992636|ref|YP_001358357.1| tRNA-specific 2-thiouridylase MnmA [Sulfurovum sp. NBC37-1]
 gi|205828996|sp|A6Q941|MNMA_SULNB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151424497|dbj|BAF72000.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sulfurovum sp. NBC37-1]
          Length = 340

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 191/368 (51%), Gaps = 39/368 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDS+V A LL+++GY+V GV ++L++     +              ++V D
Sbjct: 5   KVLVGLSGGVDSTVTAVLLQKEGYEVEGVYMRLHDKPGYHEDNWG--------KVQKVAD 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D  E F   V   F  SY  G TP PCV CNRT+KF  ++     LG + +
Sbjct: 57  YLRIKVHFHDLSEAFNANVYEYFVESYKKGLTPNPCVMCNRTIKFGKMVEFADTLGIEFV 116

Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY++   + +Y  +D              +DQSYFL    ++ L  L FPLG   K+
Sbjct: 117 ATGHYLQCDGNYIYAAEDAG------------KDQSYFLSEVKKEVLPRLLFPLGTWIKD 164

Query: 199 SVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            V+  A  + +  + A +++S +ICFV+    +D V   +  I + G+ V   G ++G H
Sbjct: 165 DVKAYAANIDVLKEFATQAESSEICFVENS--YDEVLAKHMNIDMPGETVDTQGNVVGTH 222

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+RRG  V    +P FV+ +   S++++VG RE LE +   +++IN     L
Sbjct: 223 KGYMHYTIGKRRGFFVNGAHDPHFVIDIKPESNQIVVGTREKLEENAFEVKQIN-----L 277

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           FED V   F C VK+R     VP  ++   +   V   +   G+A  Q   FY       
Sbjct: 278 FEDLV--EFDCEVKVRYRTRAVPCHIKIEGERATVVLTEPVFGLAKEQVAAFYDG----R 331

Query: 376 RVLGGGII 383
           R+LGGG+I
Sbjct: 332 RLLGGGVI 339


>gi|260768141|ref|ZP_05877075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii CIP 102972]
 gi|260616171|gb|EEX41356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii CIP 102972]
          Length = 372

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 197/373 (52%), Gaps = 26/373 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +   +    +  C A +D+ DA+ VCD
Sbjct: 12  KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 69  KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY+R      + G++ + M R +D  +DQSYFL+    +Q+    FP+G+++K  V
Sbjct: 129 IAMGHYVRRTF--PEHGEKPQ-MLRGLDGNKDQSYFLYTLGHEQVARSLFPVGELEKPEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G H G++
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GL +        +P +V   D   + +I         L+ + +   +++W+ 
Sbjct: 244 YHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQLHWV- 302

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D +    + +  +C VK R  Q  +   V   D+  + V F++ +V V  GQ+ VFY  +
Sbjct: 303 DRM---PMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAVFYQGE 359

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 360 V----CLGGGIIE 368


>gi|182683091|ref|YP_001834838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CGSP14]
 gi|182628425|gb|ACB89373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CGSP14]
          Length = 391

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 202/395 (51%), Gaps = 38/395 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 17  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 73  DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 133 YAMTLGADYVATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 189 LGHLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG           SL
Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306

Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           E  +++  RE+        E+  ++   C  K R  Q    V V    D   V F + + 
Sbjct: 307 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQR 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            +  GQA VFY  +      LGGG+I  + R   V
Sbjct: 357 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 387


>gi|303256580|ref|ZP_07342594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderiales bacterium 1_1_47]
 gi|302860071|gb|EFL83148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderiales bacterium 1_1_47]
          Length = 378

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 192/373 (51%), Gaps = 25/373 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK+ GY+VIG+ ++ +     S+    C + QD+ DA  V D 
Sbjct: 23  VVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVADV 79

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++ + +++ V   F S Y+AG TP P V CN  +KF   L    +LGAD +A
Sbjct: 80  IGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADKIA 139

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R     DG     + + +D  +DQSYFL    Q QL    FP+GDM K  VR 
Sbjct: 140 TGHYARVR---ERDGLFE--LLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEVRR 194

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A E+GL  A K DS  ICF+ +  + + + R  A     G I   +G+I+G H G+  Y
Sbjct: 195 IAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLANKP--GPIKTPDGRIVGEHIGLSYY 252

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINWLGDG 314
           T+GQR+G+GV       GEP FV   D  N++  IV   +   L+   +     NW+   
Sbjct: 253 TLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWISGT 312

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E   + G K   ++   +  V   ++ +D+ V V        V  GQ+ VFY    +E
Sbjct: 313 APEAGRMLGLKTRYRMADQECKV---IRTDDESVVVSSLDPLWAVTPGQSAVFY----DE 365

Query: 375 ARVLGGGIISGSK 387
              LGG II  S+
Sbjct: 366 EVCLGGAIIGTSR 378


>gi|296102847|ref|YP_003612993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057306|gb|ADF62044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 370

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G IV ++G  +G+H G++
Sbjct: 180 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIVTVDGDEIGQHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + +    +C VK R  Q  +P  +   +DD + V F++    V  GQ+ VFY+
Sbjct: 296 VD----REPLKGTLRCTVKTRYRQTDIPCTITALDDDRIDVRFDEPVAAVTPGQSAVFYS 351

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 352 GDI----CLGGGIIE 362


>gi|322374000|ref|ZP_08048534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C150]
 gi|321276966|gb|EFX54037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C150]
          Length = 373

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G HNG++ 
Sbjct: 181 EIAEHAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            L E  +    +C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 299 MLEEFDM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352

Query: 374 EARVLGGGIISGSKRSDAV 392
           E   LGGGII  + +   V
Sbjct: 353 EC--LGGGIIDQAYKDGKV 369


>gi|303255169|ref|ZP_07341245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS455]
 gi|303259175|ref|ZP_07345153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP-BS293]
 gi|303263258|ref|ZP_07349181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS397]
 gi|303265423|ref|ZP_07351323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS457]
 gi|302597999|gb|EFL65069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS455]
 gi|302639593|gb|EFL70050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP-BS293]
 gi|302644863|gb|EFL75110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS457]
 gi|302647031|gb|EFL77255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS397]
          Length = 373

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|225024394|ref|ZP_03713586.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC
           23834]
 gi|224942775|gb|EEG23984.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC
           23834]
          Length = 368

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 24/375 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P    ++V +SGGVDSSV A LLK+ G+ V GV +Q +      +    C   QD +DA 
Sbjct: 2   PTPQNIIVGLSGGVDSSVTAHLLKQQGHQVRGVFMQNWEDDDNDEY---CSIKQDSFDAI 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D I +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L    + G
Sbjct: 59  AVADIIGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVEQG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY R  ++ G     +  + + +D  +DQSYFL+     QL    FPLG ++K
Sbjct: 119 AEAIATGHYARKEVHSG-----KHYLLKGLDANKDQSYFLYRLQPHQLERALFPLGHLEK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E GL  A K DS  ICF+ +  + + +++  +    EGD+V   G+++G+H 
Sbjct: 174 PEVRRIAAEAGLPTAAKKDSTGICFIGERPFREFLQKYLS--TCEGDMVTPEGKVVGKHI 231

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL-- 311
           G++ YT+GQR+GLG+   GEP FV   D  ++R+IV        L    + + +++W   
Sbjct: 232 GLMFYTLGQRKGLGIGGAGEPWFVAGKDLAANRLIVVQGHQHPMLFSGSLTMSQLSWTLP 291

Query: 312 ---GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
              G+          + C  + R +  P  +     DD   + F+  +  V  GQ+ V Y
Sbjct: 292 ENPGEAHGSRPPEGRYTCKTRYRMADAPCQLRY-LGDDSAELVFDAPQWAVTPGQSAVLY 350

Query: 369 TSDSNEARVLGGGII 383
             D      LGGGII
Sbjct: 351 DGDV----CLGGGII 361


>gi|307707803|ref|ZP_07644280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis NCTC 12261]
 gi|307616063|gb|EFN95259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis NCTC 12261]
          Length = 373

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 200/387 (51%), Gaps = 26/387 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + ++V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDSVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++ + +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDSRDM 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +  
Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA 
Sbjct: 291 SQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAV 346

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAV 392
           VFY  +      LGGG+I  + R   V
Sbjct: 347 VFYDGE----ECLGGGLIDNAYRDGQV 369


>gi|295675544|ref|YP_003604068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1002]
 gi|295435387|gb|ADG14557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1002]
          Length = 420

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 179/376 (47%), Gaps = 29/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     DG  R  + + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRQNHERDG--RFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+I+G H G+  
Sbjct: 180 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKIVGEHIGLAF 237

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP F    D  ++ + V        L  H +     +W+  
Sbjct: 238 YTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSWVAG 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY------VDFEKSEVGVASGQACVF 367
               +   DGF C  K R  Q            G        + F+ ++  V  GQ+ V 
Sbjct: 298 ----EPPADGFACGAKTRYRQADAACTFNAAAAGGSGDGLFELTFDAAQWAVTPGQSAVL 353

Query: 368 YTSDSNEARVLGGGII 383
           Y  D      LGGGII
Sbjct: 354 YDGDV----CLGGGII 365


>gi|306826063|ref|ZP_07459399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431779|gb|EFM34759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 415

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 200/395 (50%), Gaps = 38/395 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG           SL
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330

Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           E  +++  RE+        E+  ++   C  K R  Q    V V    D   V F + + 
Sbjct: 331 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 380

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            +  GQA VFY  +      LGGG+I  + R+  V
Sbjct: 381 AITPGQAVVFYDGE----ECLGGGLIDNAYRNGKV 411


>gi|264680822|ref|YP_003280732.1| Predicted tRNA(5-methylaminomethyl-2-
           thiouridylate)methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|262211338|gb|ACY35436.1| Predicted tRNA(5-methylaminomethyl-2-
           thiouridylate)methyltransferase [Comamonas testosteroni
           CNB-2]
          Length = 376

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 192/380 (50%), Gaps = 34/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V D
Sbjct: 6   RVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ +
Sbjct: 63  VIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++ K  VR
Sbjct: 123 ATGHYARVRQ---NPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
            +A E+GL  A K DS  ICF+ +  + D + R    I+ E G I+    + LG+H G+ 
Sbjct: 180 RIAEEIGLPNARKKDSTGICFIGERPFRDFLNRY---ISKEPGPILDDRNRKLGKHVGLS 236

Query: 261 NYTIGQRRGLGV--------AMG----EPLFVV--YLDKNSSRVIVGPRESLEV-HRIYL 305
            YT+GQR GLG+        A G     P FV    +DKN  RV+ G    L + H +  
Sbjct: 237 FYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALLA 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364
            +++W+       A  +G     K R  Q   P  + Q  D G  +DF +++  V  GQ+
Sbjct: 297 DQVSWVAG----HAPAEGKAYGSKTRYRQPDSPALISQATDAGFRLDFPEAQWAVTPGQS 352

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D      LGGGII+
Sbjct: 353 AVLYDGDV----CLGGGIIA 368


>gi|83746745|ref|ZP_00943793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum UW551]
 gi|207744291|ref|YP_002260683.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum IPO1609]
 gi|83726514|gb|EAP73644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum UW551]
 gi|206595696|emb|CAQ62623.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum IPO1609]
          Length = 370

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 184/371 (49%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I+V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIDVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I    G+ +G+H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                   +G     K R  Q   P  V    DG + + F +++  V  GQ+ V Y  + 
Sbjct: 295 ----HPPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFTEAQWAVTPGQSAVLYDGEV 350

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 351 ----CLGGGII 357


>gi|326577507|gb|EGE27387.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis O35E]
          Length = 392

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+     +    GF+C  K R   S QD     +    D V V F+ ++ 
Sbjct: 306 TAYKLDW---GIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|77413211|ref|ZP_00789409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 515]
 gi|77160751|gb|EAO71864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 515]
          Length = 373

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 198/383 (51%), Gaps = 29/383 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK  GYDVIG  ++ ++    +   G C A +D  D   V
Sbjct: 6   NIRVVVGMSGGVDSSVTALLLKEQGYDVIGXFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H G+
Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI++ 
Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296

Query: 312 GDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            D      + + FK  C  K R  Q    V V    +   V F+  +  +  GQA VFY 
Sbjct: 297 RD------MPNEFKLECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY- 349

Query: 370 SDSNEARVLGGGIISGSKRSDAV 392
              NE   LGGG+I  + R D +
Sbjct: 350 ---NEQECLGGGMIDQAYRDDKI 369


>gi|331000512|ref|ZP_08324184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parasutterella excrementihominis YIT 11859]
 gi|329571476|gb|EGG53161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parasutterella excrementihominis YIT 11859]
          Length = 388

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/373 (35%), Positives = 192/373 (51%), Gaps = 25/373 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK+ GY+VIG+ ++ +     S+    C + QD+ DA  V D 
Sbjct: 33  VVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVADV 89

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++ + +++ V   F S Y+AG TP P V CN  +KF   L    +LGAD +A
Sbjct: 90  IGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADKIA 149

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R     DG     + + +D  +DQSYFL    Q QL    FP+GDM K  VR 
Sbjct: 150 TGHYARVR---ERDGLFE--LLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEVRR 204

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A E+GL  A K DS  ICF+ +  + + + R  A     G I   +G+I+G H G+  Y
Sbjct: 205 IAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLANKP--GPIKTPDGRIVGEHIGLSYY 262

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINWLGDG 314
           T+GQR+G+GV       GEP FV   D  N++  IV   +   L+   +     NW+   
Sbjct: 263 TLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWISGT 322

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E   + G K   ++   +  V   ++ +D+ V V        V  GQ+ VFY    +E
Sbjct: 323 APEAGRMLGLKTRYRMADQECKV---IRTDDESVVVSSLDPLWAVTPGQSAVFY----DE 375

Query: 375 ARVLGGGIISGSK 387
              LGG II  S+
Sbjct: 376 EVCLGGAIIGTSR 388


>gi|167854995|ref|ZP_02477769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis 29755]
 gi|219870378|ref|YP_002474753.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus parasuis SH0165]
 gi|167853843|gb|EDS25083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis 29755]
 gi|219690582|gb|ACL31805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis SH0165]
          Length = 383

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 209/386 (54%), Gaps = 29/386 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L    L +N K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C 
Sbjct: 13  LTDEQLAENAKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CT 68

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF  
Sbjct: 69  AAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKA 128

Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L    + LGA+ +ATGHY+R          ++  + R +D  +DQSYFL+  ++QQ+  
Sbjct: 129 FLEYAAEDLGANFIATGHYVRRPPL-----DQQPKLLRGLDSNKDQSYFLYTLSEQQVAQ 183

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI  
Sbjct: 184 SLFPVGDIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLPAQA--GDIKT 241

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRE---SLE 299
           ++GQ++GRH+G++ +T+GQR+GLG+     A     +VV  D  ++ +IV   +   +L 
Sbjct: 242 VDGQVIGRHDGLMYHTLGQRKGLGIGGVKGASENAWYVVEKDLVNNVLIVAQGQDNSALL 301

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              +   +++W+        + +  +C VK R  Q  +   +Q  +D+ + V F++ ++ 
Sbjct: 302 SSGLIASQLHWVD----RQPIREKLRCTVKTRYRQADILCEIQPLDDETIRVIFDEPQIA 357

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           V  GQ+ VFY  +      LGGGII 
Sbjct: 358 VTPGQSAVFYQGEV----CLGGGIIE 379


>gi|311744042|ref|ZP_07717848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromicrobium marinum DSM 15272]
 gi|311313172|gb|EFQ83083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromicrobium marinum DSM 15272]
          Length = 363

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 145/376 (38%), Positives = 192/376 (51%), Gaps = 35/376 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRVV AMSGGVDS+V AA     G+DV GV L L  + + S R G+  CC+ +D  DARR
Sbjct: 8   MRVVAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRNPR-SYRSGARGCCSIEDAGDARR 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + ++ YV+D  E F + V+  F + YAAG TP PC+ CN ++KF+ +L     LG 
Sbjct: 67  AADALGIAFYVWDMSEEFADHVVDDFVAEYAAGRTPNPCLRCNESIKFAAVLDRALALGF 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY  + L    DG     M R +D  +DQSY L   TQ QL    FPLG   K 
Sbjct: 127 DAVVTGHY--ADLRTAPDGTIE--MHRAVDAAKDQSYVLGVLTQDQLAHSMFPLGGSVKS 182

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE------GDIVHLNGQI 252
            VR  A   GL +A K DS DICF+  G         NA    E      G+IV   G +
Sbjct: 183 DVRIEAERRGLQVATKPDSHDICFIPDGD--------NAAWLTEKLGPRPGEIVDEQGAV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G H+G   +TIGQRRGL + +    G P FV+ ++  S  V VG RESL V R+   + 
Sbjct: 235 VGSHDGAYAFTIGQRRGLRLGVPADDGRPRFVLDIEPVSGTVTVGARESLTVDRLECIKP 294

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W G               V++R+        V+  +  V V+      G+A GQACV Y
Sbjct: 295 LWCGSPPVS------LHATVQLRAHGAEHRARVRVAEGAVDVELTDPAEGIAPGQACVIY 348

Query: 369 TSDSNEARVLGGGIIS 384
               +  RV+G   I+
Sbjct: 349 ----DGTRVVGSATIA 360


>gi|330016186|ref|ZP_08308416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. MS 92-3]
 gi|328529471|gb|EGF56376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. MS 92-3]
          Length = 388

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 204/391 (52%), Gaps = 32/391 (8%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +   
Sbjct: 11  ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +K
Sbjct: 69  -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F   L    + LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q
Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQ 182

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G 
Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294
           I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      P
Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
           R  L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V F+
Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +    V  GQ+ VFY  +      LGGGII 
Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|50365230|ref|YP_053655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesoplasma florum L1]
 gi|81612889|sp|Q6F152|MNMA_MESFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50363786|gb|AAT75771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesoplasma florum L1]
          Length = 374

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 190/376 (50%), Gaps = 23/376 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V+V +SGGVDSSV A LL + GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   KVIVGLSGGVDSSVAAYLLIQQGYEVEGLFMRNWDSSANNDILGNQEIDNDVCPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA  V + + +  +  D+ + +   V   F   Y  G TP P + CN+ +KF   L+   
Sbjct: 64  DALEVANKLGIKLHRIDFVQEYWEYVFEYFIKEYKKGRTPNPDILCNKYIKFDKFLNHAI 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L AD +A GHY   R    ++  ++  M R +D  +DQ+YFL   TQ QL    FPL 
Sbjct: 124 NELKADYIAMGHYAGVRF---NEKTKQYEMIRAVDTNKDQTYFLCQLTQNQLSKTLFPLQ 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
            ++K  +R +A E GL  ADK DS  ICF+ + ++   ++  N      GDIV +   ++
Sbjct: 181 SLEKPEIRKIAAEQGLITADKKDSTGICFIGEREFTKFLQ--NYISNQPGDIVDIKTNEV 238

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           LG+H G + YTIGQR+GL +  M EP +V   D +   + V P      L  +   + EI
Sbjct: 239 LGKHIGAMYYTIGQRKGLNLGGMKEPYYVAAKDIDKKIIYVCPASDESYLLSNNAIVTEI 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVF 367
           NW  D       V+ F+C  K R  Q  V V + +  D  Y V ++     V  GQ  VF
Sbjct: 299 NWSLDLKQYIDNVEEFECTAKFRYRQPDVKVRLNKIKDNEYKVSYDAIVKAVTPGQEAVF 358

Query: 368 YTSDSNEARVLGGGII 383
           Y +D      LGGGII
Sbjct: 359 YLNDI----CLGGGII 370


>gi|114332296|ref|YP_748518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas eutropha C91]
 gi|122313046|sp|Q0ADM9|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 361

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 188/375 (50%), Gaps = 29/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ +      +    C + +D  DA  V D
Sbjct: 5   RVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNWEDDDTDEY---CSSRKDFLDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++     ++   +R  V   F + Y AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  ILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDHALALGADWI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     +  + +  D  +DQSYFL+   QQQL    FP+G + K  VR
Sbjct: 122 ATGHYAQVHEING-----QFQLLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGHLYKREVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  + K DS  ICF+ +  + + + R        G+I  L+GQI+G H G++ 
Sbjct: 177 KIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLP--VDPGEIHTLDGQIVGEHQGLMY 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+        +P FV   D  ++ + V       +L    +   +++W+  
Sbjct: 235 YTIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADLSWISG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                + V       KIR  Q   P  + R   D   + F   + GV  GQ+ V Y    
Sbjct: 295 APPHQSWVYA----AKIRYRQTDAPCAIIRLEHDSCQIGFAAPQWGVTPGQSVVIY---- 346

Query: 373 NEARV-LGGGIISGS 386
            E++V LGGGII+ S
Sbjct: 347 -ESKVCLGGGIITDS 360


>gi|309799040|ref|ZP_07693293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis SK1302]
 gi|308117275|gb|EFO54698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis SK1302]
          Length = 373

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEAGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGKV 369


>gi|329297165|ref|ZP_08254501.1| tRNA-specific 2-thiouridylase MnmA [Plautia stali symbiont]
          Length = 370

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 197/373 (52%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LGAD 
Sbjct: 65  KLGIKLHKINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAADDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DG  +  + R +D  +DQSYFL+  + QQ+    FP+G ++K  V
Sbjct: 125 IATGHYVR-RADV--DGTSQ--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGKLEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I  ++G+++G H G++
Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIETVDGEVVGEHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            +T+GQR+GLG+     +  +P +VV  D   + +IV   G    L    +  ++++W+ 
Sbjct: 238 YHTLGQRKGLGIGGRKESSDDPWYVVDKDVARNTLIVAQGGDHPRLMSVGLIAQQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  V    +C VK R  Q  +P   +   DD + V F++    V  GQ+ VFY  D
Sbjct: 298 ----RQPVTAALRCTVKTRYRQSDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 354 V----CLGGGIIE 362


>gi|300703072|ref|YP_003744674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum CFBP2957]
 gi|299070735|emb|CBJ42030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum CFBP2957]
          Length = 370

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 184/372 (49%), Gaps = 27/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G I    G+ +G+H G+  
Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L  H ++  +++W+  
Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                   +G     K R  Q   P  V    DG + + F +++  V  GQ+ V Y  + 
Sbjct: 295 ----HPPAEGTHLAAKTRYRQADAPCTVACATDGALALAFVEAQWAVTPGQSAVLYDGEV 350

Query: 373 NEARVLGGGIIS 384
                LGGGII+
Sbjct: 351 ----CLGGGIIA 358


>gi|149005874|ref|ZP_01829603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP18-BS74]
 gi|225855906|ref|YP_002737417.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae P1031]
 gi|237649790|ref|ZP_04524042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821488|ref|ZP_04597333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|307126353|ref|YP_003878384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 670-6B]
 gi|254811467|sp|C1CI29|MNMA_STRZP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147762230|gb|EDK69191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP18-BS74]
 gi|225725914|gb|ACO21766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae P1031]
 gi|306483415|gb|ADM90284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 670-6B]
          Length = 373

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|315612257|ref|ZP_07887171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
 gi|315315650|gb|EFU63688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
          Length = 415

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 199/395 (50%), Gaps = 38/395 (9%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG           SL
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330

Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           E  +++  RE+        E+  ++   C  K R  Q    V V    D   V F + + 
Sbjct: 331 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 380

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            +  GQA VFY  +      LGGG+I  + R   V
Sbjct: 381 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 411


>gi|227529026|ref|ZP_03959075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351038|gb|EEJ41329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 377

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 195/381 (51%), Gaps = 25/381 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIDYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +     D   R  + R  D  +DQ+YFL     QQL  + FPL +  K  +R
Sbjct: 125 ATGHYADLKR----DADGRMHLMRAKDQNKDQTYFLSQLDYQQLDKVLFPLANYTKPEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A E GL  A K DS  ICF+ + G + + + +     A  G++  ++G+++G+H G++
Sbjct: 181 QIAEEAGLATAKKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQHMGLM 238

Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
            YTIGQRRGLG+   +    P FV+  D   + + VG     E L    +   +I+W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKKSNAPWFVIGKDIKKNVLYVGQGYENEHLYATHLEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371
            +        F C  K R  Q  V V V  ++D   V V F+     +  GQA VFY  +
Sbjct: 299 AVSRYG--HDFHCTAKFRYRQKDVGVTVHISEDEQMVTVTFDDPARAITPGQAVVFYDGE 356

Query: 372 SNEARVLGGGIISGSKRSDAV 392
                 LG  II  +   D +
Sbjct: 357 ----ECLGSAIIDRAYNHDHL 373


>gi|168487074|ref|ZP_02711582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570004|gb|EDT90532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 373

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|307705802|ref|ZP_07642645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK597]
 gi|307620634|gb|EFN99727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK597]
          Length = 373

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 199/393 (50%), Gaps = 38/393 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDM 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEV 300
           G H G++ YTIGQR GLG+         P FVV  D + + + VG           SLE 
Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290

Query: 301 HRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
            +++  RE+        E+  ++   C  K R  Q    V V    D   V F + +  +
Sbjct: 291 SQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAI 340

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
             GQA VFY  +      LGGG+I  + R   V
Sbjct: 341 TPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 369


>gi|205829101|sp|B2IRK2|MNMA_STRPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|149010994|ref|ZP_01832299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP19-BS75]
 gi|147764630|gb|EDK71560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP19-BS75]
          Length = 373

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDEAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|171920850|ref|ZP_02932016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185178984|ref|ZP_02964738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024081|ref|ZP_02996823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518246|ref|ZP_03003776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524394|ref|ZP_03004420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198273769|ref|ZP_03206303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554475|ref|YP_002284838.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550854|ref|ZP_03771803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551575|ref|ZP_03772521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|229487425|sp|B5ZBP8|MNMA_UREU1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171903054|gb|EDT49343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209268|gb|EDU06311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188019125|gb|EDU57165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998055|gb|EDU67152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195660126|gb|EDX53506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198249524|gb|EDY74306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541976|gb|ACI60205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225379390|gb|EEH01755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225380008|gb|EEH02370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 380

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 197/381 (51%), Gaps = 33/381 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-------NSRKASKRKGSCCAGQDVY 74
           RVV+ +SGGVDSSV A LLK+ GY+VIG+ +  +       N+R++ K+   C +  D  
Sbjct: 8   RVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELDYQ 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V   I +  Y  ++ + + N V   F S Y    TP P + CN+ +KF   L+  +
Sbjct: 68  DAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAK 127

Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L AD +A GHY + +            + +  D+ +DQ+YFL    Q QL +  FP+G
Sbjct: 128 NELKADYIAMGHYAKVK-----HTNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFPIG 182

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL-NG 250
           D+ K+ VR +A+E GL  A+K DS  ICF+  +  KYF      N      G+IV++ N 
Sbjct: 183 DLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYF----LENYIPNQPGEIVNIVNN 238

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           QI+G H G + YTIGQR+GL +  M E +FV   D N   + V P   L +   YL    
Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSP---LSLEDQYLISNQ 295

Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQAC 365
            L + + F +         V+ R  Q+ V V       N + V +++E ++  +  GQ  
Sbjct: 296 ALVENMNFIEPYNPQIPISVRFRHRQNLVVVNSFLCIENTNNVLINYEPAK-AITPGQYA 354

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           VFY +D      +GGG+I+ +
Sbjct: 355 VFYQND----HCIGGGVIAQT 371


>gi|165975614|ref|YP_001651207.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|205811090|sp|B0BS63|MNMA_ACTPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|165875715|gb|ABY68763.1| tRNA(5-methylaminomethyl-2-thiouridylate)methyltransferase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 389

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  D      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGDV----CLGGGVIE 385


>gi|306828717|ref|ZP_07461909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis ATCC 6249]
 gi|304428895|gb|EFM31983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis ATCC 6249]
          Length = 373

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|256846987|ref|ZP_05552433.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715651|gb|EEU30626.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 377

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 196/372 (52%), Gaps = 25/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  + L    DG     + R  D  +DQ+YFL     +QL  + FPL +  K  +R
Sbjct: 125 ATGHY--ADLKRDADGNMH--LMRAKDQHKDQTYFLSQLDHEQLDHVMFPLANYTKPEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A+E GL +ADK DS  ICF+ + G + + + +     A  G +  ++G+++G H G++
Sbjct: 181 QIAKEAGLAVADKKDSVGICFIGEDGHFREFLSQYLP--AQPGKMETIDGKVVGEHAGLM 238

Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGD 313
            YTIGQRRGLG+       EP FV+  D   + +IVG   S   L    +   +I+W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDIKRNVLIVGQGYSNPHLYATHLEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +        F C  K R  Q  + V V +  ++  V V F+     +  GQA VFY  D
Sbjct: 299 VVSRYG--HHFHCTAKFRYRQVDEGVTVDISDDETKVTVTFDDPARAITPGQAVVFY--D 354

Query: 372 SNEARVLGGGII 383
             E   LG  II
Sbjct: 355 GQEC--LGSAII 364


>gi|90579124|ref|ZP_01234934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio angustum S14]
 gi|90439957|gb|EAS65138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio angustum S14]
          Length = 371

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 202/378 (53%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R R +   +G++ + M R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IAMGHYTR-RSFPTAEGEKPQ-MLRGVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R +A E  L  A K DS  ICF+ + K+ + + +     A  G IV  + G+ +G H G+
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIGEHQGL 240

Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           + +T+GQR+GL       G    +  +VV  D  ++ +IVG     PR  L+ + +  ++
Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVKNNLLIVGQGKDHPR--LKSNGLIAKQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +   C VK R  Q  +P   +  +D+ + V F++ ++ V  GQ+ V
Sbjct: 299 LHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY    N    LGGGII 
Sbjct: 355 FY----NGEICLGGGIIE 368


>gi|257069046|ref|YP_003155301.1| tRNA-specific 2-thiouridylase MnmA [Brachybacterium faecium DSM
           4810]
 gi|256559864|gb|ACU85711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachybacterium faecium DSM 4810]
          Length = 385

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 195/397 (49%), Gaps = 50/397 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G++V+GV + L  SR  + R GS  CC  +D  DARR
Sbjct: 1   MKVLAAMSGGVDSAVAAARAAEAGHEVVGVHMALSKSRDQT-RSGSRGCCTVEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I + +YV+D  + F + V+  F + YAAG TP PCV CN  +KF+ LL     LG 
Sbjct: 60  AADRIGIPYYVWDLSDDFHDLVVEDFLAEYAAGRTPNPCVRCNERIKFASLLERATLLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY   R    D       + R  ++ +DQSY L     + +    FPLG+ + K
Sbjct: 120 DAVCTGHYASIRT---DGPGGAPSLHRSRNMAKDQSYVLAVMGPEAVGRSLFPLGEYETK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR  AR  GL ++ K DS DICFV  G     ++R + G +  G+++  +G +LG H 
Sbjct: 177 EEVRAEARSRGLGVSTKPDSYDICFVADGDTRGFLER-HLGES-PGEVLDEHGTVLGTHR 234

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +TIGQR+GLG+      G P +VV +D +S +V++G  E L    +        GD
Sbjct: 235 GTHGFTIGQRKGLGIQQPAPDGAPRYVVDIDPSSRQVVIGAAELLSTRELV------AGD 288

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV---------------------------QRNDD 346
            +  + +  G +   +IR+  + VP  +                              D 
Sbjct: 289 VISFEPLEVGRQVHAQIRAHGEAVPARILEVPATSAAGPAAGVPASAVPDSADPAPAADG 348

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + V+      GVA GQ  V Y +D    RVL    +
Sbjct: 349 SLRVELSTPIRGVAPGQTLVLYDAD----RVLAAATL 381


>gi|299769236|ref|YP_003731262.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1]
 gi|298699324|gb|ADI89889.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1]
          Length = 377

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238

Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT          GL  A     FV++ D  ++R+++G       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
               ++  V+G +C  K R  Q      VF+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPVEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|306817970|ref|ZP_07451707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35239]
 gi|304649238|gb|EFM46526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35239]
          Length = 394

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 199/405 (49%), Gaps = 48/405 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ +SGGVDS+V AA L   GYDV    ++L  S          C G+D   A+ + D
Sbjct: 4   KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESD---------CDGEDNPTAQALAD 54

Query: 82  TINVSHY---------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              V+ Y         V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++  
Sbjct: 55  ARKVAAYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVER 114

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G D +ATGHY     ++GD  + R    R   LE+DQSY L     + L    FPL
Sbjct: 115 ALREGFDYVATGHYA-CLDHIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPL 169

Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
            D++ K   R  A+  GL +A K DS DICF+  G     + R   G A  G IV  NG 
Sbjct: 170 FDVRDKAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGA 228

Query: 252 ILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+H G   YT+GQRRGL +      G+P +V  +D N + V VGP E+L+VH+I    
Sbjct: 229 VVGQHLGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGR 288

Query: 308 INWLGDGLF--EDAVVDGFKC--------------FVKIRSSQDPVPVFVQRND-DGVYV 350
           INWL +  F  +   V G +                V+ R+   P P   + +D D + V
Sbjct: 289 INWLVEPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTV 348

Query: 351 DFEKSEV--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            F ++    GVA GQ+ V Y  +   A+    G  S + R D  E
Sbjct: 349 IFPETATIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393


>gi|148987860|ref|ZP_01819323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP6-BS73]
 gi|148992708|ref|ZP_01822351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP9-BS68]
 gi|149017799|ref|ZP_01834258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP23-BS72]
 gi|168489391|ref|ZP_02713590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP195]
 gi|168493828|ref|ZP_02717971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC3059-06]
 gi|147926324|gb|EDK77397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147928434|gb|EDK79449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147931363|gb|EDK82341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP23-BS72]
 gi|183572139|gb|EDT92667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP195]
 gi|183576137|gb|EDT96665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC3059-06]
 gi|301793411|emb|CBW35778.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae INV104]
 gi|332075800|gb|EGI86267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA17570]
 gi|332076573|gb|EGI87035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA17545]
          Length = 373

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|172059678|ref|YP_001807330.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria MC40-6]
 gi|205811349|sp|B1YTE9|MNMA_BURA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171992195|gb|ACB63114.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria MC40-6]
          Length = 389

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 182/376 (48%), Gaps = 32/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV------PVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
               +   DGF C  K R  Q         P   + + +   + F+ ++  V  GQ+ V 
Sbjct: 295 ----EPPADGFSCGAKTRYRQADAACSFGRPALGRADGERFSLTFDDAQWAVTPGQSAVL 350

Query: 368 YTSDSNEARVLGGGII 383
           Y  +      LGGGII
Sbjct: 351 YDGEI----CLGGGII 362


>gi|313206777|ref|YP_004045954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Riemerella anatipestifer DSM 15868]
 gi|312446093|gb|ADQ82448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Riemerella anatipestifer DSM 15868]
 gi|315023849|gb|EFT36851.1| tRNA-specific 2-thiouridylase MnmA [Riemerella anatipestifer RA-YM]
 gi|325335784|gb|ADZ12058.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Riemerella anatipestifer RA-GD]
          Length = 395

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 198/401 (49%), Gaps = 43/401 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VVV +SGGVDSSV A LL++ G++VIG+ ++ +N    +  +  C   +D  DA  V 
Sbjct: 1   MKVVVGLSGGVDSSVAAYLLQQQGHEVIGLFMRNWNDASVT-LEDECPWIEDSNDALLVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E ++  ++      Y  G TP P V CNR VKF   +     LGAD 
Sbjct: 60  QKLGIPFQVIDMSELYKERIVDYMFEEYEKGRTPNPDVLCNREVKFDVFMKTALSLGADK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++G     +    D  +DQSYFL    Q+QL    FP+G++ K  V
Sbjct: 120 VATGHYARLSTTEDENGTTTYHLLAGKDHNKDQSYFLCQLNQEQLSKALFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFV---------------QQGKYFDVVKRINAGIA----- 240
           R++A+E+GL  A+K DSQ +CF+               ++G+  ++ K   A        
Sbjct: 180 REIAKEIGLVTANKKDSQGLCFIGKVSLPQFLQQQLKPKEGEIIEIFKDFKAYHQPRPSF 239

Query: 241 ---------LEGDIVHL--NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288
                    L   I +   +G+ +G+H G   +TIGQ +GLG+    E  F++  D   +
Sbjct: 240 SNKYEELKYLSKKITYQKSDGKSIGKHQGAQFFTIGQSKGLGIGGHKESCFIISRDVKEN 299

Query: 289 RVIVGPRESL-----EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
            + VG  ++      +V +I   +I+W+ + L E    +  +   +IR  Q      + +
Sbjct: 300 LIFVGEGKNFPGLFQKVIKIEPNDIHWVREDL-ELKNNETMEVMARIRYRQPLEKATLHK 358

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +DG+Y++FE  +  VA GQ   +Y  D     ++G G+IS
Sbjct: 359 YEDGLYIEFENPQSAVAEGQFAAWYLED----ELVGSGVIS 395


>gi|293609749|ref|ZP_06692051.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828201|gb|EFF86564.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 377

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238

Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT          GL  A     FV++ D  ++R++VG       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
               ++  V+G +C  K R  Q      +F+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPVEGLRCTAKTRYRQPDQTCTIFIDENTEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|325122971|gb|ADY82494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 377

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238

Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT          GL  A     FV++ D  ++R++VG       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
               ++  V+G +C  K R  Q      +F+  N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPVEGLRCTAKTRYRQPDQACTIFIDENTEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|169834334|ref|YP_001693654.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|205828976|sp|B1I833|MNMA_STRPI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168996836|gb|ACA37448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 373

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 196/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + +++   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKNLLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|237711510|ref|ZP_04541991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|237726033|ref|ZP_04556514.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. D4]
 gi|265752935|ref|ZP_06088504.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|229435841|gb|EEO45918.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides dorei 5_1_36/D4]
 gi|229454205|gb|EEO59926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|263236121|gb|EEZ21616.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 351

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 183/363 (50%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGG DSSV A LL+  GY+V G+T + Y        KG+    + + DAR +C+
Sbjct: 9   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYE-------KGN--DTEYLEDARTLCE 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H  +D    FR  +I  F + Y AG TP+PC  CN  +K+  L  ++ ++G    
Sbjct: 60  RLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRISDEMGIYHF 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R RL  G        +    D ++DQS+FL+   Q+ L  +  P+G++ K  VR
Sbjct: 120 ATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174

Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E G L  A K DS  +CF        + K +  G  L G      G  + RH G  
Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E       L  +  
Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITNPALLLNK- 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D     ++ R   +   V +Q  D+ ++V   +    +A GQA  FY  D     VLGG
Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347

Query: 381 GII 383
           GII
Sbjct: 348 GII 350


>gi|328953724|ref|YP_004371058.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM
           11109]
 gi|328454048|gb|AEB09877.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM
           11109]
          Length = 351

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 190/365 (52%), Gaps = 28/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV VA+SGG+DS+V AALL   G++V GV L L  + K++          D+     +C 
Sbjct: 7   RVAVALSGGLDSTVAAALLLNQGFEVQGVHLTL--TEKSA----------DISGIESLCQ 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++++  D    F+  +I  FA+ Y  G TP PCV CN  +KF  L    R  G D L
Sbjct: 55  FLGIAYFQLDLRREFKARIIADFAAQYRLGLTPNPCVRCNELIKFGFLFQAVRSQGFDYL 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+    +G     + + +D +++QSYFL   +   L  +  PLG + K  VR
Sbjct: 115 ATGHY--ARVEAAPNGMMG--LWQGVDPDKEQSYFLHRLSPDCLPAVLLPLGRLTKSQVR 170

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259
           + +   GL       +SQ++CF+  G Y D ++ ++  G+   G IV+  G++LG H G+
Sbjct: 171 EKSLAWGLAQYLPNRESQELCFIPDGDYIDFMRNMDVTGLDRPGPIVNRRGEVLGTHRGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+    P +V+ +    +R++VG +  L    + + +INW     F   
Sbjct: 231 EHYTVGQRQGLGLPGPAPSYVLEIIPAGNRLVVGCKADLLADELLVEDINW-----FIPV 285

Query: 320 VVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            ++  +  VKIR        + +  +   V V F+  +  +  GQA VFY  +    R+L
Sbjct: 286 PLEPLRARVKIRYRHPGATAIILPLDRRRVRVRFDLPQTAITPGQAAVFYQDN----RLL 341

Query: 379 GGGII 383
           GGG I
Sbjct: 342 GGGWI 346


>gi|325698055|gb|EGD39936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK160]
          Length = 373

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 199/380 (52%), Gaps = 25/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +S+Y  ++E+ +   V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGISYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++
Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + + E+  ++   C  K R  Q    V V    D   V+F++ +  V  GQA VFY  D 
Sbjct: 298 E-MPEEFTIE---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD- 352

Query: 373 NEARVLGGGIISGSKRSDAV 392
                LGGG+I  + ++  V
Sbjct: 353 ---ECLGGGLIDRAYKNGQV 369


>gi|158521761|ref|YP_001529631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfococcus oleovorans Hxd3]
 gi|205816872|sp|A9A0S9|MNMA_DESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158510587|gb|ABW67554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfococcus oleovorans Hxd3]
          Length = 358

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 28/376 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LN   L+ +  +  + V +SGG+DS V A LLK+ G DV  +        +   R G   
Sbjct: 7   LNPWPLESS--NPLIAVLVSGGIDSLVAAHLLKQSGADVTAI--HFLTGYEPEDRAGRL- 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    ++   +++  ++FD    F++ V+  F ++Y  GETP PC+ CN  +KF  
Sbjct: 62  --------EKLFTQMDIPVFIFDCRTVFQSNVVDYFTAAYLRGETPNPCMVCNSRIKFGA 113

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +   R LGAD +ATGHY R+      DG R   + +  D  ++QSYFL   +Q QL   
Sbjct: 114 CMDYARSLGADAVATGHYCRTTK--DPDGVR---LWKGADPAKEQSYFLAFLSQDQLGRA 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPL  M K+ VR  A   GL   +  +SQD+CF++  +  D ++     I   G I  +
Sbjct: 169 RFPLERMTKDQVRAHAARHGLVPIESKESQDVCFIRGEECADFIEAQVPAIPGPGPIEDM 228

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G+++G H+G+  +T+GQRRG+     +P +V  LD   + + VG R+ L V    + ++
Sbjct: 229 TGRLIGTHSGLHRFTVGQRRGINCPAEQPYYVAALDMARNCLKVGFRQDLFVPVCRVAQV 288

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NW+      D         VKIR +Q  VP       +    V+F   +  VA GQ  VF
Sbjct: 289 NWI-----PDRPKGSMNVSVKIRYNQTEVPARLTALGETDAVVEFVTPQFAVAPGQGAVF 343

Query: 368 YTSDSNEARVLGGGII 383
           Y  D+    VLGGGII
Sbjct: 344 YDGDA----VLGGGII 355


>gi|148983522|ref|ZP_01816841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP3-BS71]
 gi|221231050|ref|YP_002510202.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|254811464|sp|B8ZK04|MNMA_STRPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147923669|gb|EDK74781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP3-BS71]
 gi|220673510|emb|CAR67990.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|301799298|emb|CBW31824.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae OXC141]
          Length = 373

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|331267205|ref|YP_004326835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis Uo5]
 gi|326683877|emb|CBZ01495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis Uo5]
          Length = 373

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|261367050|ref|ZP_05979933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Subdoligranulum variabile DSM 15176]
 gi|282571170|gb|EFB76705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Subdoligranulum variabile DSM 15176]
          Length = 348

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 176/366 (48%), Gaps = 29/366 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++ MSGGVDSSV   +L+  G+ V G  +     R +    G+  A Q+      
Sbjct: 9   KQYKVLMGMSGGVDSSVAVRILQEQGFAVQGAVI-----RFSPAHDGAVSAAQES----- 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
              T+ +  ++ D  + F   VI+PF  SY AG TP PC+ CN  VKF  L     +LG 
Sbjct: 59  -AKTLQIPLHIIDARDAFEQHVILPFCESYCAGMTPNPCILCNPLVKFRLLAEKANELGC 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R  +    D K    +  P    RDQSY L+   Q+ L  L  PLG+ +K+
Sbjct: 118 QFIATGHYARVEV----DHKGVSRIAVPQSTARDQSYMLYRLPQEILSKLILPLGEFEKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++AR++ L  AD  DS +ICF+  G Y   + R        G  +   G+ LG H G
Sbjct: 174 DIREMARDIHLACADAPDSMEICFIPDGDYAAYI-RSRGFSPKTGRFIGPQGEDLGPHAG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YT+GQR+GLG+A G PLFV  + +N      G  +  E  + Y   I        + 
Sbjct: 233 VDHYTVGQRKGLGIAAGRPLFVKAILEN------GDIQLAETGQEYSTHITLCDLTTPDG 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             +      VKIRS+  P P      D    V F       A GQ+ VFY     +  V 
Sbjct: 287 QPLPAGDYLVKIRSAAKPSPCLY---DGAGAVRFPDPVRAPAPGQSAVFY----RDGLVF 339

Query: 379 GGGIIS 384
           GGGII+
Sbjct: 340 GGGIIA 345


>gi|328957187|ref|YP_004374573.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4]
 gi|328673511|gb|AEB29557.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4]
          Length = 362

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 195/369 (52%), Gaps = 26/369 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A +LK+ GYDV+G+ ++ ++    +   G C A +D  D   V + I + 
Sbjct: 1   MSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYNDVALVANQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y  ++E+++ + V   F   Y  G TP P V CN+ +KF   L    +LGAD +ATGHY
Sbjct: 58  YYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYVATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR +A E
Sbjct: 118 AQ----VERDENGVTHMLRGLDNNKDQTYFLNQLSQEQLAKTLFPLGGMQKSEVRKIAEE 173

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL  A K DS  +CF+ +  +   +  +    A  G ++ ++G++ G+H+G++ YTIGQ
Sbjct: 174 AGLATAKKKDSTGVCFIGERDFKKFL--MTYLPAQPGSMMTVDGEVKGQHDGLMYYTIGQ 231

Query: 267 RRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319
           R+GLG+       +P FVV  D  ++ + VG     E L    +   ++++  +    + 
Sbjct: 232 RQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDLHFTTN----EE 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDSNEARV 377
               FKC  K R  Q    V VQ N+DG    V+F++    +  GQA VFY    +    
Sbjct: 288 KPRTFKCTAKFRYRQADTGVTVQLNEDGTAATVEFDEPVRAITPGQAVVFY----DGLEC 343

Query: 378 LGGGIISGS 386
           LGGG I  +
Sbjct: 344 LGGGTIDAA 352


>gi|325281986|ref|YP_004254528.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
 gi|324313795|gb|ADY34348.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
          Length = 349

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 188/365 (51%), Gaps = 29/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV MSGGVDS V A LL+R GY+VIGVTL+L+                D+   R  C+
Sbjct: 3   KVVVGMSGGVDSFVTALLLRRQGYEVIGVTLELWEK-------------NDLSGVRDSCE 49

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+     +  E FR  V+ PF  +Y +G TP PC  CNR VK+  L  V  +LG + +
Sbjct: 50  KLNIPFLCREGHELFRQQVVDPFVKAYRSGLTPSPCCICNRRVKWILLQQVADELGVEYI 109

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R     G     R  + + +D ++DQSYFL+   Q  L     PLG+  K+ V+
Sbjct: 110 ATGHYVRIAEREG-----RFYIRKGIDPQKDQSYFLWGLPQALLRRALTPLGEYTKKQVK 164

Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVK--RINAGIALEGDIVHLNGQILGRHNG 258
           + A   G + +A + +S  ICF++   Y D +K   I       G+I+   G++LG H G
Sbjct: 165 EWAARNGYEQMARRRESMGICFLKNKDYRDFIKDYPIKDFRQESGEIIDDKGRVLGVHAG 224

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+NYT+GQ+RG+    G P++V  +D   + +IV P+  L    + + ++  +    F D
Sbjct: 225 ILNYTVGQKRGIPDRTGVPMYVREIDVERNSIIVAPKSGLYTSVLTVGQVEAV---YFGD 281

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + DG +  ++         +  +R + D + V   +    VA GQ   FY  D     +
Sbjct: 282 LLADGVEIKIRGLGLNPRGNIRAERLSPDRLKVVLSEPAWAVAPGQPVAFYHEDI----L 337

Query: 378 LGGGI 382
           LGGGI
Sbjct: 338 LGGGI 342


>gi|161833715|ref|YP_001597911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri GWSS]
 gi|205828995|sp|A8Z5W4|MNMA_SULMW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152206205|gb|ABS30515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri GWSS]
          Length = 380

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 197/396 (49%), Gaps = 45/396 (11%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N K  RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN          C   +D  DA
Sbjct: 2   NVKRKRVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNF--------ECPWREDSIDA 53

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V  ++ +  Y+ D  + ++N +I      Y  G TP P + CN  +KF   L  +  L
Sbjct: 54  MLVSQSLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFL 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +D +ATGHY+R +  + ++GK    +   +D  +DQSYFL    + Q+    FPLG + 
Sbjct: 114 KSDFIATGHYVRKKE-INENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLN 172

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------- 249
           K+ VR++A +  L  A+K DSQ ICF+ + K+ + +K+  A    +G I+ +N       
Sbjct: 173 KKEVREIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLA--EKKGIIIEINKNSHIFK 230

Query: 250 -----------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVI 291
                            G+I+G H G   +T GQR+GL +     PLFV+  D   + + 
Sbjct: 231 YKQKKLFSKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILY 290

Query: 292 VG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348
           VG       L    I +++ N       +       +C ++ R +     ++ + ND  +
Sbjct: 291 VGMGKNHPGLYTKVICIKKYNIHWINKKKIKTKIEVECRIRYRQNFKKATLYKKNND--L 348

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           YV+FE  ++ V  GQ  V+Y ++     V+G G+IS
Sbjct: 349 YVEFEIPQLAVNGGQFIVWYINNE----VIGSGLIS 380


>gi|326567524|gb|EGE17639.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC1]
          Length = 392

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     SK    C A  D+ D
Sbjct: 15  KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSKY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 SQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+   A +    GF+C  K R   S QD     +    D V V F+ ++ 
Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|146319824|ref|YP_001199536.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 05ZYH33]
 gi|253752800|ref|YP_003025941.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis SC84]
 gi|253754625|ref|YP_003027766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis P1/7]
 gi|253756558|ref|YP_003029698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis BM407]
 gi|205828994|sp|A4VYE7|MNMA_STRSY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829102|sp|A4W4N7|MNMA_STRS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145690630|gb|ABP91136.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus suis 05ZYH33]
 gi|251817089|emb|CAZ52741.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis SC84]
 gi|251819022|emb|CAZ56869.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis BM407]
 gi|251820871|emb|CAR47637.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis P1/7]
          Length = 374

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 9   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 66  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 126 ATGHY--AQVTRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G H G++ 
Sbjct: 182 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 239

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ESL    +   ++++  D
Sbjct: 240 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 299

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 300 -MPEEFTLE---CTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 353

Query: 374 EARVLGGGII 383
           E   LGGG+I
Sbjct: 354 EC--LGGGMI 361


>gi|15618353|ref|NP_224638.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila pneumoniae
           CWL029]
 gi|15835971|ref|NP_300495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae J138]
 gi|16752601|ref|NP_444864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae AR39]
 gi|33241787|ref|NP_876728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae TW-183]
 gi|6647887|sp|Q9Z8A5|MNMA_CHLPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4376720|gb|AAD18582.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189243|gb|AAF38171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae AR39]
 gi|8978810|dbj|BAA98646.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236296|gb|AAP98385.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
          Length = 361

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 187/368 (50%), Gaps = 27/368 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA L K+   Y VIG+ ++ +   +     G C + +D  D  RVC 
Sbjct: 5   VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNW---EEDSEGGLCSSTKDYEDVERVCL 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + +R  V   F   Y+ G TP P + CNR +KF  L    ++LG D L
Sbjct: 62  QLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDYL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +     +   + R  D ++DQSYFL  T +  L ++ FPLG+M K  VR
Sbjct: 122 ATGHYCRLNTEL-----QETQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260
            +A +  L  A+K DS  ICF+ +  + + +++        G+++  +  +I+G+H G  
Sbjct: 177 AIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPNKT--GNVIDWDTKEIVGQHQGAH 234

Query: 261 NYTIGQRRGLGVAMGE-PLFVV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLF 316
            YTIGQRRGL +   E P +VV   +++NS  ++ G     L +  +  RE+NW      
Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWF----- 289

Query: 317 EDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 G  C  K+R  S D        + D V V F +    V  GQ   FY  D+   
Sbjct: 290 -TPPKSGCHCSAKVRYRSPDEACTIDYSSGDEVKVRFSQPVKAVTPGQTIAFYQGDT--- 345

Query: 376 RVLGGGII 383
             LG G+I
Sbjct: 346 -CLGSGVI 352


>gi|307244970|ref|ZP_07527067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253923|ref|ZP_07535775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258377|ref|ZP_07540118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306854135|gb|EFM86343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306863127|gb|EFM95069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867561|gb|EFM99408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 389

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 213/387 (55%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D +++  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLDMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|330723585|gb|AEC45955.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyorhinis MCLD]
          Length = 370

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 190/369 (51%), Gaps = 39/369 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S   +  KG+       C   +D  
Sbjct: 3   KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+ VC  +N+  Y  D+ + +   V   F   Y +G+TP P + CN+ +KF   L    
Sbjct: 63  DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +    D +A GHY ++     ++GK    + +  DL +DQSYFL      QL    FPL 
Sbjct: 123 KTFNVDFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           ++ K  VR +A E+ L   +K DS  ICF+ + K+ D ++  N   A  GDIV ++  + 
Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQ--NYIPAQPGDIVDISKNKK 231

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +G+H GI+ +T+GQR+GLG+  M +P FVV  +     + V P+   +          WL
Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQ----------WL 281

Query: 312 ----GDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
                DG+  + +   F   K  VK R  Q+ +P  +Q  D+  + V++ +    V  GQ
Sbjct: 282 ISDKADGINLNLIETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQ 341

Query: 364 ACVFYTSDS 372
             V Y  D 
Sbjct: 342 EVVIYQEDK 350


>gi|312864108|ref|ZP_07724343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis F0396]
 gi|322515817|ref|ZP_08068761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
 gi|311100340|gb|EFQ58548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis F0396]
 gi|322125703|gb|EFX97025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
          Length = 373

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 201/380 (52%), Gaps = 25/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A  +GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G HNG++
Sbjct: 180 REIAERVGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I++  
Sbjct: 238 YYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           D   E  +    +C  K R  Q    V V+   D   V F + +  +  GQA VFY  D 
Sbjct: 298 DMPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGIISGSKRSDAV 392
            E   LGGGII  + +   V
Sbjct: 352 QEC--LGGGIIDQAYKDGKV 369


>gi|253570358|ref|ZP_04847767.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6]
 gi|205814939|sp|Q8A0Y3|MNMA3_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|251840739|gb|EES68821.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6]
          Length = 362

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AYIATGHYSRLEERSGHIYIVAGDDDK------------KDQSYFLWRLGQDILKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ QG Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKIKVREYLAEKGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +    
Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   VA
Sbjct: 276 ---------QDRIVDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|326565359|gb|EGE15537.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 12P80B1]
          Length = 392

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 206/389 (52%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+     +    GF+C  K R   S QD     +    D V V F  ++ 
Sbjct: 306 TAYKLDW---GIAPPVQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|296875545|ref|ZP_06899617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433469|gb|EFH19244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 373

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 202/379 (53%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTIDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     E+L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQSSQVHFTRE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352

Query: 374 EARVLGGGIISGSKRSDAV 392
           E   LGGGII  + +   V
Sbjct: 353 EC--LGGGIIDQAYKDGKV 369


>gi|254499186|ref|ZP_05111866.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella drancourtii LLAP12]
 gi|254351576|gb|EET10431.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella drancourtii LLAP12]
          Length = 361

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V MSGGVDSSV A LLK  GY+V G+ ++ +         G C A QD+ DA+ VC+
Sbjct: 4   KIIVGMSGGVDSSVAAWLLKEQGYEVEGLFMKNWEQDDTD---GFCPAAQDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+  +  ++ E++   V + F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLNIPLHSVNFSEQYWERVFMHFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALDLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++++           + +  D ++DQ+YFL A     L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNKI-----SNNIGHLLKAKDRDKDQTYFLHAVDPAALAKTLFPIGDYTKPEIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +K     +A  G+I +++G +LG+H+G++ 
Sbjct: 176 EFAKQLGLVTQAKKDSTGICFIGEKRFKTFLKEFI--LAKPGEIKNMDGSVLGKHDGLMF 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRES-LEVHRIYLREINWLGD 313
           YT+GQR+GLG+     +  +P +VV  D   N+  V  G +   L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGTQNSTEDPWYVVDKDVATNTLYVAQGSQHPMLYAQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
              +D +     C+ K R  Q      +   D D  YV F   +  V  GQ  VFY  D 
Sbjct: 294 --CKDNLP--LTCYAKTRYRQAEQGCMISPPDGDLHYVMFSSPQRAVTPGQYIVFY--DK 347

Query: 373 NEARVLGGGII 383
           N+   LGG  I
Sbjct: 348 NQC--LGGATI 356


>gi|71892171|ref|YP_277903.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123640946|sp|Q492R5|MNMA_BLOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71796277|gb|AAZ41028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 367

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 197/379 (51%), Gaps = 40/379 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +    ++++   C +  D+ D   VCD
Sbjct: 8   KVIVGMSGGVDSSVSAWLLQQQGYKVEGLFMKNWEDDDSTEQ---CASASDLSDTHSVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++ + +   V   F   Y+ G TP P + CN+ +KF   L    Q L AD+
Sbjct: 65  NLGIYLHTINFSKEYWENVFQVFLQEYSVGRTPNPDILCNKEIKFKYFLEFALQDLDADL 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       D  ++  + R +D  +DQSYFL+  + +QL    FP+G + K  V
Sbjct: 125 IATGHYVRRV-----DMNKKTYLIRGVDRNKDQSYFLYTLSYKQLKQCLFPVGTLNKFQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILGRHN 257
           R++A+++ L  A+K DS  ICF+ + K+ D + +   I  G+     I+ +NG  +G H 
Sbjct: 180 RNIAKKLNLITANKKDSTGICFIGKRKFKDFISKYIPIRPGV-----IIDINGNTIGAHQ 234

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           G+  YT+GQR+GL +       G+P +V+  D +++ +I       PR  L        +
Sbjct: 235 GVSFYTLGQRKGLKIGGVKQGNGQPWYVIDKDTSNNTLIAAQGRNHPR--LMSIAFITEQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             W+      DA+     C VK R     +   ++   N++ + V  +   + +  GQ+ 
Sbjct: 293 TQWVK----RDALTSPLHCTVKTRYRHPDIQCQIYPLLNNN-LKVILKIPVLAITPGQSA 347

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  +    R LGGGII+
Sbjct: 348 VFYLKE----RCLGGGIIT 362


>gi|330684725|gb|EGG96422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU121]
          Length = 336

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 175/340 (51%), Gaps = 41/340 (12%)

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +   G C A +D  D   VC+ I + +Y  ++E+ + + V   F   Y  G TP P V C
Sbjct: 7   TDENGVCTATEDYNDVIAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMC 66

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+ +KF   L    +LGAD +ATGHY R R +  +DG     M R +D  +DQ+YFL   
Sbjct: 67  NKEIKFKAFLEHALKLGADYVATGHYARIRRH--EDGHVE--MLRGIDNNKDQTYFLNQL 122

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +QQQL  + FP+GD+ K+ VR +A E  L  A K DS  ICF+ +  +   + +     A
Sbjct: 123 SQQQLSKVMFPIGDIDKKRVRQIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--A 180

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLE 299
             GD+V L+G+ +G H+G++ YTIGQR GLG+   G+P FVV              ++LE
Sbjct: 181 QSGDMVTLDGKKMGVHSGLMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLE 227

Query: 300 VHRIYLREINWLGDGLFEDAVV---------------DGFKCFVKIRSSQDPVPVFVQR- 343
            + +Y+ E  +  D L+ D ++                GF C  K R  Q    VFVQR 
Sbjct: 228 DNVLYV-EQGFHHDALYSDYLIASDVSFVNEQDVDLEKGFYCTAKFRYRQKDTKVFVQRE 286

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           N++ + V F++    +  GQA VFY    N+   LGG  I
Sbjct: 287 NNEAIRVTFDEPVRAITPGQAVVFY----NDEVCLGGATI 322


>gi|73542506|ref|YP_297026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia eutropha JMP134]
 gi|123624143|sp|Q46XF1|MNMA_RALEJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72119919|gb|AAZ62182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia eutropha JMP134]
          Length = 362

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 26/375 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVR----QNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 178 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 235

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D  S+ + V        L    +   +++W+  
Sbjct: 236 YTLGQRKGIGLGGSREGSGDAWYVARKDMASNTLYVVQGHDHPWLLTPTLVAADLSWVAG 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
               +  + G     K R  Q   P  V   D D + + F +++  V  GQ+ V Y  D 
Sbjct: 296 ----EPPLAGASMAAKTRYRQSDAPCVVDAADGDMLKLAFAEAQWAVTPGQSAVLYDGDV 351

Query: 373 NEARVLGGGIISGSK 387
                LGGGII  ++
Sbjct: 352 ----CLGGGIIQSAQ 362


>gi|319759218|gb|ADV71160.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14]
          Length = 419

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 54  RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 110

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 111 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 170

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 171 ATGHY--AQVTRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 226

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G H G++ 
Sbjct: 227 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 284

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ESL    +   ++++  D
Sbjct: 285 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 344

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 345 -MPEEFTLE---CTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 398

Query: 374 EARVLGGGII 383
           E   LGGG+I
Sbjct: 399 EC--LGGGMI 406


>gi|319760524|ref|YP_004124462.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039238|gb|ADV33788.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 366

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 201/374 (53%), Gaps = 30/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDSSV A LLK+ GY V G+ ++ + +    +    C +  D+ DA  VC+
Sbjct: 3   KVIVGISGGVDSSVSAWLLKKRGYKVEGLFMKNWENDDTQE---FCASKSDLIDACSVCN 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
           T+ +  +  ++   + N V   F   Y  G TP P + CN+ +KF   L    + LGAD 
Sbjct: 60  TLKIPLHTVNFSREYWNNVFKVFLKLYNIGLTPNPDILCNKEIKFKYFLEFAIEDLGADF 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R    +  + K   I  R +DL +DQSYFL+   QQQL    FP+G+  K  V
Sbjct: 120 IATGHYVRR---INFNNKISLI--RGIDLNKDQSYFLYTLNQQQLKHCLFPIGNFTKLKV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A+++ L  A+K DS  ICF+ +  +    K ++  I ++ G IV+++G  +G H G+
Sbjct: 175 RSIAKKLNLITANKKDSMGICFIGKRNF---KKFLSNYIPIQPGPIVNVHGYKIGTHQGV 231

Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREINWL 311
             YTIGQR+GL +     + G+P +VV   ++ NS  V  G     L  ++  +++I W+
Sbjct: 232 PFYTIGQRKGLNIGGIKNSNGKPWYVVDKKIENNSLIVAQGINHPCLMSNQFVVQQIFWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            + +    +    +C VK R  Q     ++   + + + +  +     +  GQ+ VFY +
Sbjct: 292 EECILTSPL----QCSVKTRYRQPDSKCYIFPISKNNLRIILKYPITAITPGQSAVFYLN 347

Query: 371 DSNEARVLGGGIIS 384
           +    R LGGGII+
Sbjct: 348 E----RCLGGGIIT 357


>gi|259503048|ref|ZP_05745950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus antri DSM 16041]
 gi|259168914|gb|EEW53409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus antri DSM 16041]
          Length = 377

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 194/372 (52%), Gaps = 25/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++    +   G C A +D  D  +V  
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAA 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD +
Sbjct: 65  KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY   +     D   R  + R  D  +DQ+YFL      QL  + FPL    K  +R
Sbjct: 125 ATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLARYTKPQIR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A+E GL  A+K DS  ICF+ + G + + + +     A  G++  ++G+++G+H G++
Sbjct: 181 EIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYLP--AQPGNMETVDGKVVGQHMGLM 238

Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQRRGLG+       EP FV+  D   + + VG     E L    +   +I+W+ D
Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDIKKNVLYVGQGYHNEHLYATHLEASDIHWVDD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +        F C  K R  Q  V V V+   +D  V V+F+     +  GQA  FY  D
Sbjct: 299 VV--SRFGREFHCTAKFRYRQKDVGVTVKIAADDQMVTVNFDDPARAITPGQAVAFY--D 354

Query: 372 SNEARVLGGGII 383
             E   LG  II
Sbjct: 355 GQEC--LGSAII 364


>gi|223933686|ref|ZP_03625662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis 89/1591]
 gi|223897639|gb|EEF64024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis 89/1591]
          Length = 419

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 54  RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 110

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 111 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 170

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 171 ATGHY--AQVSRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 226

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G H G++ 
Sbjct: 227 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 284

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ESL    +   ++++  D
Sbjct: 285 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 344

Query: 314 GLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 + + FK  C  K R  Q    V V+   D   V F + +  +  GQA VFY  D
Sbjct: 345 ------MPEEFKLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQQAITPGQAVVFY--D 396

Query: 372 SNEARVLGGGII 383
             E   LGGG+I
Sbjct: 397 GQEC--LGGGMI 406


>gi|189460624|ref|ZP_03009409.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136]
 gi|189432583|gb|EDV01568.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136]
          Length = 374

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 194/374 (51%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K+ R++V MSGG+DSS    +L+  GY+V+GVT++ ++  S  ++  +       ++ +A
Sbjct: 3   KEKRILVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSHFSTPEQEQ---PDEILEA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + + + + + H+V D  E FRN ++  F   Y  G TP PCV CN   K   L     + 
Sbjct: 60  KALAERLGIEHHVADVREEFRNVIVQYFIDEYMKGRTPNPCVMCNPLFKERILCEWADRT 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   +ATGHY R      +D K  R +    D  +DQSYFL+   Q+ L  + FPLG M 
Sbjct: 120 GCAQIATGHYCRL-----EDRKEHRYIVTGDDPTKDQSYFLWKLPQEILKRMVFPLGGMT 174

Query: 197 KESVRDLAREMGLDIADK-SDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQ 251
           K  VR    E G +   K  +S ++CF+ +  Y D ++     I+  I   G  V   G 
Sbjct: 175 KTEVRAYLAEKGFEAKAKGGESMEVCFIDK-DYRDFLREHCPDIDERIGT-GWFVDSKGL 232

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
            LG+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + +IN +
Sbjct: 233 KLGQHKGFAYYTIGQRKGLEIALGRPAYVLKINPAKNTVMLGDAEQLKAEYMLVEDINVI 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                   +++     V+IR    P+P  V   D+G + V F+     +  GQ+ VFY  
Sbjct: 293 D----LQELLECPDLSVRIRYRSRPIPCQVILLDEGHLLVKFKAEASAITPGQSAVFY-- 346

Query: 371 DSNEARVLGGGIIS 384
             ++ RVLGGG I+
Sbjct: 347 --DKGRVLGGGFIA 358


>gi|283784944|ref|YP_003364809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter rodentium ICC168]
 gi|282948398|emb|CBG87986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter rodentium ICC168]
          Length = 368

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 34/383 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G++ K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G  
Sbjct: 171 GELSKPQVRKIAEDLELVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G+H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    
Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILIVAQGHDHPR--LMSVG 286

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           +  ++++W+    F   +    +C VK R  Q  +P  V+  ++D + V F++    V  
Sbjct: 287 LIAQQLHWVDRLPFTGTM----RCTVKTRYRQTDIPCTVKALDNDRIEVIFDEPVAAVTP 342

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY    N    LGGGII 
Sbjct: 343 GQSAVFY----NGEVCLGGGIIE 361


>gi|299531933|ref|ZP_07045333.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44]
 gi|298720108|gb|EFI61065.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44]
          Length = 376

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 34/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V D
Sbjct: 6   RVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ +
Sbjct: 63  VIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++ K  VR
Sbjct: 123 ATGHYARVRQ---NPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
            +A E+GL  A K DS  ICF+ +  + D + R    I+ E G I+    + LG+H G+ 
Sbjct: 180 RIAEEIGLPNARKKDSTGICFIGERPFRDFLNRY---ISKEPGLILDDRNRKLGKHVGLS 236

Query: 261 NYTIGQRRGLGV--------AMG----EPLFVV--YLDKNSSRVIVGPRES-LEVHRIYL 305
            YT+GQR GLG+        A G     P FV    +DKN  RV+ G     L+ H +  
Sbjct: 237 FYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLQSHALLA 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364
            +++W+       A  +G     K R  Q   P  + Q  + G  +DF +++  V  GQ+
Sbjct: 297 DQVSWVAG----QAPAEGKAYGSKTRYRQPDSPALISQATEAGFRLDFPEAQWAVTPGQS 352

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D      LGGGII+
Sbjct: 353 AVLYDGDV----CLGGGIIA 368


>gi|307711099|ref|ZP_07647521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK321]
 gi|307617061|gb|EFN96239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK321]
          Length = 373

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 194/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYREGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  +   +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKTFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|298480213|ref|ZP_06998411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|298273494|gb|EFI15057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 361

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYETKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +    
Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A
Sbjct: 276 ---------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|146322015|ref|YP_001201726.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 98HAH33]
 gi|145692821|gb|ABP93326.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus suis 98HAH33]
 gi|292559420|gb|ADE32421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis GZ1]
          Length = 423

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 58  RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 114

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 115 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 174

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 175 ATGHY--AQVTRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 230

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G H G++ 
Sbjct: 231 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 288

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ESL    +   ++++  D
Sbjct: 289 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 348

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 349 -MPEEFTLE---CTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 402

Query: 374 EARVLGGGII 383
           E   LGGG+I
Sbjct: 403 EC--LGGGMI 410


>gi|116628661|ref|YP_821280.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
           LMD-9]
 gi|122266745|sp|Q03I88|MNMA_STRTD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116101938|gb|ABJ67084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus thermophilus LMD-9]
          Length = 373

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 197/370 (53%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I++ +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKAMFPLGHLQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G HNG++ 
Sbjct: 181 EIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASTIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY--DGQ 352

Query: 374 EARVLGGGII 383
           E   LGGGII
Sbjct: 353 EC--LGGGII 360


>gi|94986647|ref|YP_594580.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Lawsonia intracellularis PHE/MN1-00]
 gi|205816877|sp|Q1MRW7|MNMA_LAWIP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94730896|emb|CAJ54259.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 352

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 186/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M V VA+SGG DS    A L+     + V  +            R         V   + 
Sbjct: 1   MNVAVAVSGGTDSLYTLATLREAFGNHHVFAL----------HARFKEQITNDPVPALKE 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  +NV  +V D  + F   +I PF  +YA G+TP PCV CN  VKF  L    ++LGA
Sbjct: 51  QCHNLNVPLHVVDLHKEFNELIIRPFIKAYADGKTPNPCVHCNAKVKFGLLQKKAQELGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY+     +  D   + + C   D  +DQSYFL  T ++QL    FPLG ++K 
Sbjct: 111 NQIATGHYVS---LIDHDLYGKALKCG-ADSTKDQSYFLALTPREQLQTAIFPLGTLRKT 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+  ++MGL++    +SQ+ICFV    Y   ++  +  +  EG +V L+G ++G+H G
Sbjct: 167 EVRERLQKMGLEVPLPKESQEICFVPNDDYRKFLQSSDVDLLSEGRMVMLDGTLVGKHKG 226

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQRRGLGV+  EPL+V + + + + +++G  + + V     ++IN+L   + +D
Sbjct: 227 LWKYTEGQRRGLGVSWSEPLYVAHKNHSCNELVLGTAKDILVDTCTAQDINFL---VPQD 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-----RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 + FV+ R  Q  VP  +Q      +   + + F   ++  A GQ    +     
Sbjct: 284 NWPK--ELFVRTRYRQQAVPADIQFVTNTSSSKKITIHFHSPQLPAAPGQLAAIF---DK 338

Query: 374 EARVLGGGIIS 384
              VL GG+I+
Sbjct: 339 SGYVLAGGLIT 349


>gi|168492409|ref|ZP_02716552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183573402|gb|EDT93930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 373

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    +   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|261377622|ref|ZP_05982195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria cinerea ATCC 14685]
 gi|269146376|gb|EEZ72794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria cinerea ATCC 14685]
          Length = 367

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 190/380 (50%), Gaps = 24/380 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD++ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IDQGADIIATGHYARKEVRNG-----THYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI-- 308
           G+H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  
Sbjct: 231 GKHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVM 286

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           N L   L E      + C  + R    P  +    +D+ V + F++S+  V  GQ+ V Y
Sbjct: 287 NDLSFTLPERPKEGRYTCKTRYRMVDAPCEL-RYLDDETVELVFDESQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKR 388
             D      LGGGII  + +
Sbjct: 346 EGDV----CLGGGIIQSTDK 361


>gi|55821970|ref|YP_140412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMG
           18311]
 gi|55823887|ref|YP_142328.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
           CNRZ1066]
 gi|81558821|sp|Q5LXJ9|MNMA_STRT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81560008|sp|Q5M249|MNMA_STRT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|55737955|gb|AAV61597.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptococcus thermophilus LMG 18311]
 gi|55739872|gb|AAV63513.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptococcus thermophilus CNRZ1066]
 gi|312279316|gb|ADQ63973.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus thermophilus ND03]
          Length = 373

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I++ +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G HNG++ 
Sbjct: 181 EIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTIDGRDMGEHNGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY--DGQ 352

Query: 374 EARVLGGGIISGSKRSDAV 392
           E   LGGGII  + +   V
Sbjct: 353 EC--LGGGIIDQAYKDGKV 369


>gi|325919552|ref|ZP_08181566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas gardneri ATCC 19865]
 gi|325549961|gb|EGD20801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas gardneri ATCC 19865]
          Length = 378

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 186/374 (49%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++V +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIIVGVSGGVDSSVAAWRLAQQGESIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSNEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAR----VAHSGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++  L    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDANLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RES--LEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V   R+S  L+ H +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSHWLQSEQPHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V+  DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVEVRDDGSVQVRFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 EE--CLGGAVIAAT 359


>gi|222153939|ref|YP_002563116.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus uberis 0140J]
 gi|254811465|sp|B9DWD3|MNMA_STRU0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222114752|emb|CAR43910.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus uberis 0140J]
          Length = 373

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 196/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F S Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLSEYKAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R    +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQVRR--DEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           D   E  +    +C  K R  Q    V V    +   V F++ +  +  GQA VFY ++ 
Sbjct: 298 DMPSEFTL----ECTAKFRYRQPDSKVTVYVKGEHAEVVFDEPQRAITPGQAVVFYDAE- 352

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 353 ---ECLGGGII 360


>gi|190149429|ref|YP_001967954.1| tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|303249862|ref|ZP_07336066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307249368|ref|ZP_07531361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251687|ref|ZP_07533592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260616|ref|ZP_07542308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262747|ref|ZP_07544374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|189914560|gb|ACE60812.1| putative tRNA (5-methylaminomethyl-2-
           thiouridylate)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651429|gb|EFL81581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306858590|gb|EFM90653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860884|gb|EFM92892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869693|gb|EFN01478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871892|gb|EFN03609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 389

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|217969633|ref|YP_002354867.1| tRNA-specific 2-thiouridylase MnmA [Thauera sp. MZ1T]
 gi|217506960|gb|ACK53971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thauera sp. MZ1T]
          Length = 365

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 190/381 (49%), Gaps = 35/381 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VVV MSGGVDS+V A LLKR GY V G+ ++ +     S+    C   QD+ D   VC
Sbjct: 1   MKVVVGMSGGVDSAVTALLLKRQGYQVTGLFMKNWEDDDDSE---YCSTRQDLVDVASVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +   V ++   +++ V   F   Y AG TP P V CN  +KF   L    QLGA+ 
Sbjct: 58  DVIGIDLEVVNFSAEYKDRVFADFLHEYEAGRTPNPDVLCNSEIKFRCFLDHAMQLGAER 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R +  +DG+    + +  D  +DQSYFL+   Q+QL    FPLG + K  V
Sbjct: 118 IATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQEQLAKTMFPLGALYKREV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E GL +A+K DS  ICF+ +  + + + R        G+I  L +G++LG H G+
Sbjct: 177 RRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--TRPGEIRALDDGRVLGEHQGL 234

Query: 260 INYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306
           + +TIGQR+GL +             E  +V   D  ++ + V       +L   R+   
Sbjct: 235 MYHTIGQRKGLHIGGLKGNQDEAGEHEAWYVAGKDVKANVLYVVQGHAHPALLKDRLVAG 294

Query: 307 EINWLGDGLFEDAVVDGFKCFV---KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
           ++NW+       A  D    +V   K R      P  + R  DG   + F + +  V  G
Sbjct: 295 DLNWI-------AGRDPHSHWVYTAKPRYRTPDQPCEIDRIVDGRAEIAFAQPQWAVTPG 347

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ V Y S       LGGGII
Sbjct: 348 QSVVVYESKV----CLGGGII 364


>gi|30248966|ref|NP_841036.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Nitrosomonas europaea ATCC 19718]
 gi|81584700|sp|Q82VV0|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Nitrosomonas europaea ATCC 19718]
          Length = 362

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 135/384 (35%), Positives = 190/384 (49%), Gaps = 45/384 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV G+ ++ +      +    C + QD  DA  V D
Sbjct: 5   RVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNWEEDDTDEY---CSSRQDFLDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++   V ++   +R  V   F   Y AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  ILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDHALNLGADWI 121

Query: 142 ATGHYIRS-------RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY +        +L  G+DG             +DQSYFL+   QQQL    FP+G 
Sbjct: 122 ATGHYAQVHETDGLFQLLKGEDGN------------KDQSYFLYRLNQQQLSHTIFPIGH 169

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR +ARE  L  + K DS  ICF+ +  + + + R     A  G+I  L+ Q++G
Sbjct: 170 LYKREVRKIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLP--ANPGEIHTLDDQVVG 227

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLR 306
            H G++ YTIGQR+GLG+        +P FV   D  KN   V+ G    +L    +   
Sbjct: 228 EHLGVMYYTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAA 287

Query: 307 EINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           +++W+ G    ++ V        KIR  Q   P  +     D   + F   + G+  GQ+
Sbjct: 288 DLSWISGTPPHQNWVYA-----AKIRYRQTDAPCAITHFEHDSCQIGFAAPQWGITPGQS 342

Query: 365 CVFYTSDSNEARV-LGGGIISGSK 387
            V Y     E++V LGGG+I GS 
Sbjct: 343 VVVY-----ESKVCLGGGVIIGSN 361


>gi|295086500|emb|CBK68023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 361

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +    
Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A
Sbjct: 276 ---------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|262408193|ref|ZP_06084740.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294806750|ref|ZP_06765577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262353745|gb|EEZ02838.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294446032|gb|EFG14672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 361

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +    
Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A
Sbjct: 276 ---------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas sp. AL212]
 gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas sp. AL212]
          Length = 359

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 189/377 (50%), Gaps = 39/377 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A +LK+ GYDV+G+ ++ +      +    C + QD  DA  V D
Sbjct: 5   RVIVGMSGGVDSSVAAYVLKQQGYDVVGLFMKNWEDDDTDEY---CSSRQDFIDAVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I++   + ++   ++  V   F + Y AG TP P V CN  +KF   L    +LGAD +
Sbjct: 62  VIDIPIEIVNFSIEYKERVFSQFLAEYQAGRTPNPDVLCNAEIKFKAFLDHANKLGADYI 121

Query: 142 ATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R R       L  G+DG             +DQSYFL+   Q QL    FP+G 
Sbjct: 122 ATGHYARVRKAGGVFQLLKGEDGN------------KDQSYFLYRLNQAQLAKSLFPIGH 169

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR +ARE+ L  + K DS  ICF+ +  + + + R        G+I   +G+++G
Sbjct: 170 LYKREVRKIARELKLPNSSKKDSTGICFIGERPFREFLNRYLP--HEPGEIQTTDGKVIG 227

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSS-RVIVGPRESLEVHRIYLREI 308
            H G++ YTIGQR+GLG+        EP FV   D N +  ++V      ++ R  L+ I
Sbjct: 228 EHIGLMYYTIGQRQGLGIGGIRNGGDEPWFVAAKDMNRNVLIVVQGHNHPDLFRPSLKAI 287

Query: 309 N--WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +  W+ D       V   K   + R +  P  +    + +   V+F +++  +  GQ+ V
Sbjct: 288 DLSWIDDKQPHCNWVYAAK--TRYRQTDAPCTI-TNLSHESCEVEFAQNQWAITPGQSVV 344

Query: 367 FYTSDSNEARVLGGGII 383
            Y S       LGGG+I
Sbjct: 345 IYESQV----CLGGGVI 357


>gi|255536681|ref|YP_003097052.1| tRNA-specific 2-thiouridylase MnmA [Flavobacteriaceae bacterium
           3519-10]
 gi|255342877|gb|ACU08990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 395

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/403 (30%), Positives = 205/403 (50%), Gaps = 47/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV +SGGVDSSV A LL++ G++V+ + ++ +N    +  +  C   +D  DA  V 
Sbjct: 1   MKIVVGLSGGVDSSVAAYLLQKQGHEVVALFMRNWNDASVT-LEDECPWIEDSNDALMVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E ++  ++    + Y  G TP P V CNR VKF   +     LGA+ 
Sbjct: 60  QKLGIPFQVIDMSELYKEKIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTALSLGAEK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    V ++G     +    D  +DQSYFL   +Q QL    FP+G++ K  V
Sbjct: 120 VATGHYARVDSTVDENGNEMFHLLAGKDNNKDQSYFLCQLSQDQLSKSLFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFV---------------QQGKYFDVVK---RINAG---- 238
           R++A+E+GL  ADK DSQ +CF+               ++GK  ++ K    + A     
Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPTFLQQQLKPKEGKIVEIFKDFPELTAEKPQF 239

Query: 239 ---------IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288
                    ++ +      +G+I+G+H G   +TIGQ +GLG+    E  F++  D  ++
Sbjct: 240 ATKLEELKFLSTKNSYQESDGKIIGKHQGAHYFTIGQSKGLGIGGHKESCFIISRDMPTN 299

Query: 289 RVIVGPRESLE-VHRIYLR----EINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFV 341
            + VG  ++   +++  L+    EI+W+ + L    +++G   K   +IR  Q      +
Sbjct: 300 TIFVGEGKNFPGLYQTALKIDPSEIHWVREDL---RLLNGETMKVQARIRYRQALEEATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + ++G++++FE  +  VA GQ   +Y  D     +LG G+IS
Sbjct: 357 YQFEEGLFIEFENPQSAVAEGQFAAWYMED----ELLGSGVIS 395


>gi|254514300|ref|ZP_05126361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR5-3]
 gi|219676543|gb|EED32908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR5-3]
          Length = 368

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 192/379 (50%), Gaps = 26/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A +L   GY V G+ ++ ++    ++    C A  D  DA+ V D
Sbjct: 6   KVIVGMSGGVDSSVAALMLLEQGYHVEGLFMKNWDEDDGTEY---CTAKADFADAQAVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  ++   + + V   F + Y +G TP P + CNR +KF   L    +LGAD +
Sbjct: 63  KLQITLHSANFAAEYWDNVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYALELGADSI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  +  G     R  + + +D  +DQSYFL A    +L    FPLG++ K  VR
Sbjct: 123 ATGHYARRGVMQG-----RPALLKGLDANKDQSYFLHAVGHAELAKTLFPLGEIAKPEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A    L   DK DS  ICF+ + ++ D ++R     A  G I  L G  +G H+G++ 
Sbjct: 178 ARAAAADLTTHDKKDSTGICFIGERRFKDFLQRYLP--AQPGVIKTLEGDTIGEHSGLMY 235

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+         P +V   D   N   V+ G    +L    ++ +E+ W+  
Sbjct: 236 HTIGQRQGLGIGGLATHNEAPWYVAGKDLGNNVLWVVQGNDHPALFSDELWAQELFWISG 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               +A     +C  K+R  Q      V ++ D   V F++ +  +  GQ+ VFY  ++ 
Sbjct: 296 ----EAPSLPLRCKAKVRYRQPDQDCTVIQDKDHYRVSFDQPQRAITPGQSVVFYQDNA- 350

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I+ +  + A+
Sbjct: 351 ---CLGGGVITDTGAALAI 366


>gi|293370352|ref|ZP_06616907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634573|gb|EFF53107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 361

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +    
Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A
Sbjct: 276 ---------KDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|228477995|ref|ZP_04062606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus salivarius SK126]
 gi|228250175|gb|EEK09428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus salivarius SK126]
          Length = 373

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G HNG++ 
Sbjct: 181 EIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V+   D   V F + +  +  GQA VFY  D  
Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352

Query: 374 EARVLGGGIISGSKRSDAV 392
           E   LGGGII  + +   V
Sbjct: 353 EC--LGGGIIDQAYKDGKV 369


>gi|302337414|ref|YP_003802620.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634599|gb|ADK80026.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 360

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/382 (34%), Positives = 193/382 (50%), Gaps = 41/382 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  +  VV+A+SGGVDSSV A +L R    + G T  + +          CC  + +Y A
Sbjct: 3   NTHNDAVVIALSGGVDSSVAAWMLSRQSGRIFGATHYIQDD-------SPCCNTKTIYRA 55

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +C  + + + + D    FR +V+ PF  +Y   ETP PCV CN  ++F D     R+L
Sbjct: 56  RVICRDLGIPYRLLDMRSSFRQSVVDPFVETYRRAETPNPCVRCNERLRFGDFYHQVRRL 115

Query: 137 ----GA------DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               GA        +ATGHY R+ +  G    R+ +     D  +DQSY L+   +  L 
Sbjct: 116 LVEEGALRETERPRIATGHYARTAVVDGVSYIRKGV-----DPSKDQSYMLYRIPRDVLP 170

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAG-IALEGD 244
            + FPLG+  K+ V ++A    L      +SQDICF   G Y D ++ R+    +   GD
Sbjct: 171 YVCFPLGEYTKKEVVEIALRENLPTKSIKESQDICFA-DGGYIDFLRHRLGTEFVDRPGD 229

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +V  +G+ LG+H G ++YTIGQR+GLG+  G P +V  +D +++RV+V  +      R  
Sbjct: 230 LVDNSGKRLGQHRGYLHYTIGQRQGLGLGDG-PWYVSQIDGDANRVVVARKGEFGTQRFS 288

Query: 305 LREINW-LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVAS 361
           L E+ W L D          F+C VKIR +   VP  V+       + V+ E+    V  
Sbjct: 289 LSEVIWDLPDA-------PPFECMVKIRYNSGEVPCRVEGLPESGSLLVELEEP-ASVTP 340

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ+ VFY  D     V+GGGII
Sbjct: 341 GQSAVFYRDDL----VIGGGII 358


>gi|294636777|ref|ZP_06715115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda ATCC 23685]
 gi|291089992|gb|EFE22553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda ATCC 23685]
          Length = 376

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 200/376 (53%), Gaps = 32/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 17  KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNDE---YCSAAADLADAQAVCD 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 74  KLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 133

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     DG  +  + R +D  +DQSYFL+  + QQ+    FP+G+++K  V
Sbjct: 134 IATGHYVRRR---DIDGTTQ--LLRGVDANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 188

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G H G++
Sbjct: 189 RRIATQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGQEIGEHQGLM 246

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        EP +VV  D  ++ ++V      PR  L  + +  ++++W
Sbjct: 247 YHTLGQRKGLGIGGTKEGNEEPWYVVDKDVANNVLLVAQGHDHPR--LFSNGLIAQQLHW 304

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  +P  V   DD  + V F++    V  GQ+ VFY 
Sbjct: 305 VD----RRPLTAELRCTVKTRYRQADIPCRVIPIDDTRIEVRFDQPVAAVTPGQSAVFYQ 360

Query: 370 SDSNEARVLGGGIISG 385
            +      LGGGII  
Sbjct: 361 DEV----CLGGGIIEA 372


>gi|53728867|ref|ZP_00134691.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 389

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 211/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|324989555|gb|EGC21501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK353]
          Length = 373

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+F+K +  +  GQA VFY  D  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQAVVFYDGD-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + ++  V
Sbjct: 353 --ECLGGGLIDRAYKNGQV 369


>gi|307256183|ref|ZP_07537970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865364|gb|EFM97260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 389

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNVQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|83319617|ref|YP_424495.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535669|sp|Q2SRW8|MNMA_MYCCT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83283503|gb|ABC01435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 375

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINDDICPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA+ V D +N+  +  D+ + + + V   F   Y    TP P + CN+ +KF   L+   
Sbjct: 64  DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            QL AD +A GHY +      +   ++  + +  D+ +DQ+YFL    Q QL    FPL 
Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTKQYELIKASDINKDQTYFLSQLNQNQLSKTLFPLA 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ KE VR +A E  L  A+K DS  ICF+ +  +   ++  N   +  GDIV +   ++
Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERNFTSFLQ--NYIPSQTGDIVDIKTNKV 238

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306
           LG+H GI+ YTIGQR+G+ ++ M EP +V   DK+  + I+    + +   +Y     + 
Sbjct: 239 LGKHIGIMYYTIGQRKGINLSGMSEPYYVA--DKDVKKNILYVCSTSDQSYLYSTSCLVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           +INW+ D       V+ F+C  K R  Q    V V++ DD  Y V F+K    +  GQ  
Sbjct: 297 DINWILDISKYVDDVNQFECQAKFRYRQLDNKVVVKKIDDNNYKVMFKKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D      LGG +I
Sbjct: 357 VFYLDDI----CLGGAVI 370


>gi|221069865|ref|ZP_03545970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Comamonas testosteroni KF-1]
 gi|220714888|gb|EED70256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Comamonas testosteroni KF-1]
          Length = 376

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 34/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V D
Sbjct: 6   RVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ +
Sbjct: 63  VIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++ K  VR
Sbjct: 123 ATGHYARVRQ---NPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
            +A E+GL  A K DS  ICF+ +  + D + R    I+ E G I+    + LG+H G+ 
Sbjct: 180 RIAEEIGLPNARKKDSTGICFIGERPFRDFLNRY---ISKEPGPILDDRNRKLGKHVGLS 236

Query: 261 NYTIGQRRGLGV--------AMG----EPLFVV--YLDKNSSRVIVGPRESLEV-HRIYL 305
            YT+GQR GLG+        A G     P FV    +DKN  RV+ G    L + H +  
Sbjct: 237 FYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALLA 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364
            +++W+       A   G     K R  Q   P  + Q ++ G  +DF +++  V  GQ+
Sbjct: 297 DQVSWVAG----HAPAQGKAYGSKTRYRQPDSPALISQASEAGFRLDFPEAQWAVTPGQS 352

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D      LGGGII+
Sbjct: 353 AVLYDGDV----CLGGGIIA 368


>gi|254429373|ref|ZP_05043080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax sp. DG881]
 gi|196195542|gb|EDX90501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax sp. DG881]
          Length = 364

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 195/382 (51%), Gaps = 36/382 (9%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD RV+V MSGGVDSSV AA L   GY V G+ ++ +N    +     C A +D+ D
Sbjct: 3   KAPKDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTD---YCTAREDLLD 59

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A +V   + +  +  ++ E++ + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 60  AMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHAIT 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY  S++  GD  +    + R +D  +DQ+YFL A   Q+     FPLGD+
Sbjct: 120 LGADYIATGHY--SQVSHGDKAQ----LLRAVDTNKDQTYFLHAVDYQKFDRTLFPLGDL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E G D   K DS  ICF+ + ++ D +++     A  G I   +G ++G+
Sbjct: 174 EKPEVRRIAEEKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGTIEDDHGNVIGK 231

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G++ YT+GQR+GLG+     A   P +V    LD+N    + G    L    +Y RE+
Sbjct: 232 QDGLMYYTLGQRQGLGIGGLASASEAPWYVAGKDLDRNVLIAVQGTDHPL----LYSREL 287

Query: 309 N-----WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
                 W+      +A     +   K R  Q      V    +G V+V F++ +  V  G
Sbjct: 288 TSAPMQWVA----LEAPALPARLTAKTRYRQPDQACTVSDAGNGRVHVIFDQPQRAVTPG 343

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY    +    LGG +I 
Sbjct: 344 QSVVFY----DGPVCLGGAVIE 361


>gi|254363194|ref|ZP_04979243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia haemolytica PHL213]
 gi|153095088|gb|EDN75639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia haemolytica PHL213]
          Length = 387

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L    L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 16  KLTPEQLAENSKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 71

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  ++ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 72  TAAAELADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 131

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R      DD   +  + R +D  +DQSYFL+A  ++Q+ 
Sbjct: 132 AFLEYAAEDLGADYIATGHYVRR---TSDDQDAK--LLRGLDENKDQSYFLYALNKKQIG 186

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 187 QSLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 244

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ +IV       +L
Sbjct: 245 TVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHDNSAL 304

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +  +++ W+        + +  +C VK R  Q  +   +Q  +D+ + V F++ ++
Sbjct: 305 LSSGLIAKQLTWVD----MQPLRENLRCTVKTRYRQADIACEIQVIDDETIRVMFDEPQI 360

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGGII 
Sbjct: 361 AVTPGQSAVFYLGEV----CLGGGIIE 383


>gi|205822469|sp|A6T7K3|MNMA_KLEP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G H G++
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + +    +C VK R  Q  +P  V   ++D + V F++    V  GQ+ VFY 
Sbjct: 295 VN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 351 GEV----CLGGGIIE 361


>gi|134280393|ref|ZP_01767104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 305]
 gi|226198381|ref|ZP_03793950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pakistan 9]
 gi|134248400|gb|EBA48483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 305]
 gi|225929564|gb|EEH25582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 377

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 177/372 (47%), Gaps = 30/372 (8%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I
Sbjct: 1   MVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLI 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +AT
Sbjct: 58  GIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIAT 117

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++
Sbjct: 118 GHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREI 172

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT
Sbjct: 173 AAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYT 230

Query: 264 IGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGL 315
            GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+    
Sbjct: 231 FGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG-- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y  D
Sbjct: 289 --EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGD 346

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 347 V----CLGGGII 354


>gi|224025546|ref|ZP_03643912.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM
           18228]
 gi|224018782|gb|EEF76780.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM
           18228]
          Length = 361

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 25/372 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          + DAR 
Sbjct: 12  KNNKVLLGMSGGTDSSVAAMLLQDAGYEVTGITFRFYEKDFQTEY---------LEDARH 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + + H  +D  E F   +I  F   Y  G TP+PC  CN  +K+  L  +  + G 
Sbjct: 63  LCEQLGIRHLTYDAREVFEEQIIHYFIQEYMNGRTPVPCTLCNNQLKWPLLKEIADREGI 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G     R  +    D ++DQS+FL+   Q  L    FP+G++ K 
Sbjct: 123 YHLATGHYVRKQTVNG-----RWFIRSGADPDKDQSFFLWGLPQDLLERALFPMGELTKV 177

Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            VR++A E G L  A K DS  +CF        +   +  G    G+ +   G+ LG+H 
Sbjct: 178 RVREIAAERGQLKAARKRDSLGVCFCPMDYRTFLKSHVPEGQISPGEFLDEEGRKLGQHE 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDGLF 316
           G   YTIGQRRGLG+ + + LFV       +RVIV     +LE   + L + N +     
Sbjct: 238 GYPFYTIGQRRGLGIWLNKTLFVKETLPEQNRVIVCDNLRALEKQEMLLTDWNLIDP--- 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            +  ++     VKIR  +      V    DG ++V+  +    VA GQA VFY  D    
Sbjct: 295 -ETALNHPDVIVKIRYRKQANRCTVTCTGDGCLHVNLHEPLASVAPGQAAVFYRDDL--- 350

Query: 376 RVLGGGIISGSK 387
            VLGGGII+ S+
Sbjct: 351 -VLGGGIIATSR 361


>gi|152978287|ref|YP_001343916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus succinogenes 130Z]
 gi|205811095|sp|A6VLY4|MNMA_ACTSZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150840010|gb|ABR73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus succinogenes 130Z]
          Length = 389

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 206/386 (53%), Gaps = 29/386 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L    L +N K ++V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTPGQLAENGK-IKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVCDKLGIRLHKINFATEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     G D      + R +D  +DQSYFL A +++Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GPDHDAH--LLRGLDNNKDQSYFLHALSKKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  GDI 
Sbjct: 189 QSLFPVGEVEKTVVRAVAEELGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGDIK 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGP---RESL 298
              G+++GRH G++ +T+GQR+GLG+           +VV  D  ++ ++V       +L
Sbjct: 247 TTEGEVIGRHQGLMYHTLGQRKGLGIGGIKGKDENAWYVVEKDLKNNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEV 357
           +   +  +++ W+     E  +     C VK R  Q  +    V  NDD V V F++ ++
Sbjct: 307 QSSGLIAKQLTWVS----EQPLRKTLHCTVKTRYRQTDIACEVVPVNDDTVEVHFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
            V  GQ+ VFY  +      LGGGII
Sbjct: 363 AVTPGQSAVFYQGE----ECLGGGII 384


>gi|262281666|ref|ZP_06059435.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
 gi|262262120|gb|EEY80817.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
          Length = 373

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+F++ +  V  GQA VFY  D  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + ++  V
Sbjct: 353 --ECLGGGLIDKAYKNGQV 369


>gi|326569370|gb|EGE19430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC8]
          Length = 392

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+   A +    GF+C  K R   S QD     +    D V V F+ ++ 
Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophaga thiooxidans DMS010]
 gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophaga thiooxydans DMS010]
          Length = 367

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 30/375 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +VVV +SGGVDSSV A LL +    V G+ ++ +        +  C   +D  DA  
Sbjct: 3   ENKKVVVGLSGGVDSSVAALLLNQQHEQVEGLFMKNWVD---FADESECTVEEDRKDAMS 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V +T+ +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    +LG 
Sbjct: 60  VAETVGIDFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKAFLDHAMELGG 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            ++ATGHY R       DGK    + + +D ++DQSYFL+   QQQL    FPLG++ K 
Sbjct: 120 VLIATGHYAR---VAERDGKFH--LLKGLDDKKDQSYFLYTLGQQQLSRTLFPLGELPKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A + G    DK DS  ICF+ +  + + + R     A  G++   +G+ +G H G
Sbjct: 175 EVRQIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIP--AQPGEMRTPDGEKIGEHAG 232

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREINWL 311
           ++ YT+GQR+GLG+     + GEP FV   D  +    V+ G    L    +   +++W+
Sbjct: 233 LMYYTLGQRQGLGIGGRKNSTGEPWFVAGKDMENRILYVVQGDHPWLWSQNLTAEQLSWV 292

Query: 312 GDGLFEDAVVDGFKC--FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                E      F C    K R  Q   P  + ++D+G ++V+F+  +  V  GQ+ VFY
Sbjct: 293 AGEEPE------FPCRAAAKTRYRQPDQPCTISKDDNGLIHVEFDDKQRAVTPGQSVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D      LGGGII
Sbjct: 347 QQDD----CLGGGII 357


>gi|317484664|ref|ZP_07943565.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6]
 gi|316924020|gb|EFV45205.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6]
          Length = 356

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 186/373 (49%), Gaps = 31/373 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VA+SGG DS    A L+R+     G  +  +  +K +  +     G +V      C
Sbjct: 1   MTIAVAVSGGADSLYAMASLQRE---YPGQVIAFHALQKETSPEDDPVPGLEV-----SC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  ++ D +E F   ++ PFA SYA GETP PCV CN  VKF   +   R+LGAD 
Sbjct: 53  RALGVPLHILDLQEAFFRQIVRPFAESYAHGETPNPCVRCNALVKFGLWMDEARKLGADR 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+     + +  +    + +  D  +DQSYFL  T   +L +  FPL  ++K  V
Sbjct: 113 LATGHYVS----LAEHPRYGMALHQGADEAKDQSYFLALTPISRLKNAVFPLARVRKSEV 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R    E GL +    +SQ+ICFV    Y   +K I   +   G +V L+G ++GRH G+ 
Sbjct: 169 RAALAEWGLSVPLPRESQEICFVPDDDYRAFLKGIGVRLPAGGPMVLLDGHVVGRHGGLW 228

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT GQRRGLGV+  EPL+V+  D++ + +++G  + L V+     E+N+L         
Sbjct: 229 QYTEGQRRGLGVSWTEPLYVIGKDRSRNALLLGTADELPVNACAAGELNFL-----VPPE 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG---------VYVDFEKSEVGVASGQ-ACVFYTS 370
           +   +  V+ R  Q  VP  ++    G         + + F + ++  A GQ A VF   
Sbjct: 284 LWPHELRVRTRYRQKAVPADIRLVGGGESGMDATARMLIRFHQPQLPSAPGQLAAVF--- 340

Query: 371 DSNEARVLGGGII 383
                 VL GGII
Sbjct: 341 -DEHGHVLAGGII 352


>gi|262368696|ref|ZP_06062025.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046]
 gi|262316374|gb|EEY97412.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046]
          Length = 377

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 197/375 (52%), Gaps = 25/375 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L    QLGAD +
Sbjct: 61  KLGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMQLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGETMTNSKGEEYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A +  L  A K DS  ICF+ + ++ D +K+     A  G IV  +G+ +G H+G++
Sbjct: 181 RKIAEQYDLVTAKKKDSTGICFIGERRFNDFLKQYLPAQA--GKIVLDDGKEVGEHHGLM 238

Query: 261 NYT------IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311
            YT      IG     GVA G   FV++ D  ++R+++G       ++   ++   I+W+
Sbjct: 239 YYTLGQRGGIGIGGLKGVAEG-AWFVLHKDIENNRLVIGQGHEHPLMQSTTLWSETIDWV 297

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFY 368
              +       GF+C  + R  QD     +        GV V+F++ +  V  GQ+ VFY
Sbjct: 298 AGEM--QIPETGFRCTSRTRYRQDDQDCVIFNDPTTPGGVRVEFDEPQRAVTPGQSVVFY 355

Query: 369 TSDSNEARVLGGGII 383
           + +      LGGG+I
Sbjct: 356 SGEV----CLGGGVI 366


>gi|225853749|ref|YP_002735261.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae JJA]
 gi|254811466|sp|C1CBU0|MNMA_STRZJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225723263|gb|ACO19116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae JJA]
          Length = 373

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV    + + + VG     +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQVHFTCD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|303251982|ref|ZP_07338153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307247144|ref|ZP_07529196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649412|gb|EFL79597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306856393|gb|EFM88544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 389

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 211/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNVQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|257459254|ref|ZP_05624371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter gracilis RM3268]
 gi|257443353|gb|EEV18479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter gracilis RM3268]
          Length = 343

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 186/367 (50%), Gaps = 29/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++++AMSGGVDSS+ A LL+  G++V G  ++L+       + G   A  ++   R+V 
Sbjct: 1   MKILIAMSGGVDSSMCAKLLQDAGHEVQGCYMKLH------AKPGYHEA--NIAKVRKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D ++ F   V  PF  +Y  G TP PC  CNR +K   LL   R+ G + 
Sbjct: 53  EFLGIKIHILDLQDDFNRDVYEPFVQAYIGGLTPNPCALCNRRIKLGKLLEFAREQGFER 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+R      +DG    ++    DL +DQSYFL       L  + FPLG M K+ V
Sbjct: 113 LATGHYVRI-----EDG----LLKAAADLSKDQSYFLANIDPAALEFMLFPLGGMYKKDV 163

Query: 201 RDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++ AR       IA  S+S +ICFV    Y DV+ R + G  + G +    G  +G H G
Sbjct: 164 KEAARAYAELSQIASASESSEICFVDT-TYIDVLNR-HTGTKMPGIVRDRAGNAIGTHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ +D + + ++VG +E L  +       N     L  
Sbjct: 222 YMHYTIGKRRGFTVHGAHEPHFVLSIDPHKNEIVVGGKEELATYEFDTENFNNF---LSR 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +++     VKIR     +PV +  R D GV+        G+A  Q  VFY       R
Sbjct: 279 DEILNMPGLGVKIRYRSAKLPVKISPREDGGVHAVLSAPAAGIAPAQLAVFY---DERDR 335

Query: 377 VLGGGII 383
           V+  G I
Sbjct: 336 VVASGFI 342


>gi|255066218|ref|ZP_05318073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sicca ATCC 29256]
 gi|255049428|gb|EET44892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sicca ATCC 29256]
          Length = 367

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 195/383 (50%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +D+ + P +  ++V +SGGVDSSV AALLK++GY V GV +Q +      +    C   Q
Sbjct: 1   MDITQQPSN--IIVGLSGGVDSSVTAALLKQEGYQVRGVFMQNWEDDDNDEY---CSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAIEQGADTIATGHYARKEVRNG-----THYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LGD++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+ V + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKEGRYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362


>gi|194398405|ref|YP_002036838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae G54]
 gi|229487424|sp|B5E605|MNMA_STRP4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194358072|gb|ACF56520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae G54]
          Length = 373

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 194/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V     + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYXXAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|15900060|ref|NP_344664.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae TIGR4]
 gi|111656982|ref|ZP_01407790.1| hypothetical protein SpneT_02001784 [Streptococcus pneumoniae
           TIGR4]
 gi|225860166|ref|YP_002741675.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229174|ref|ZP_06962855.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255779|ref|ZP_06979365.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501928|ref|YP_003723868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|24638327|sp|Q97T38|MNMA_STRPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811468|sp|C1CP03|MNMA_STRZT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14971585|gb|AAK74304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TIGR4]
 gi|225726555|gb|ACO22406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237523|gb|ADI68654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390539|gb|EGE88879.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA04375]
          Length = 373

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307
           YTIGQR GLG+         P FVV  D + + + VG           SLE  +++  RE
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +        E+  ++   C  K R  Q    V V    +   V F + +  +  GQA VF
Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVF 348

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I  + R   V
Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369


>gi|206576946|ref|YP_002239233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae 342]
 gi|229486343|sp|B5XSN3|MNMA_KLEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|206566004|gb|ACI07780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae 342]
          Length = 368

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G H G++
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQGLM 236

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 237 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + +    +C VK R  Q  +P  V   ++D + V F++    V  GQ+ VFY 
Sbjct: 295 VD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 351 GEV----CLGGGIIE 361


>gi|322378861|ref|ZP_08053278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS1]
 gi|322379966|ref|ZP_08054241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS5]
 gi|321147605|gb|EFX42230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS5]
 gi|321148671|gb|EFX43154.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS1]
          Length = 345

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 188/374 (50%), Gaps = 38/374 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V MSGGVDSS  A LLK+ G+D++G+ L+L+   +        C        + V 
Sbjct: 1   MKIAVLMSGGVDSSYSAYLLKQAGHDLLGLYLKLHGKEEKHAFYIKNC--------QEVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+   V D +E F+  V   F  +Y  G+TP PC  CN  +KF   L      G + 
Sbjct: 53  SFLNIPFEVVDLQEPFKKQVYEVFIDTYKNGQTPNPCALCNPLMKFGLGLEFALDRGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    + D     RI     DL +DQSYFL+A  Q  +  L FPLG + K  +
Sbjct: 113 VATGHYAR----LMDLEGVLRIQ-EAFDLSKDQSYFLYALPQHAIDALMFPLGGLLKSEI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  A E    +G D+    +SQ+ICFV +G Y D +K+ +  +  +G + +L G+++G H
Sbjct: 168 KPKALEAMPFLG-DLQTYKESQEICFV-EGSYIDTLKQ-HIDVDQKGLVRNLKGEVVGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  V     P FVV +   ++ +IVG +E L +  +            
Sbjct: 225 KGYMHYTIGKRKGFTVQGAHTPHFVVGIHAKANEIIVGEKEDLAIFTLEAE--------- 275

Query: 316 FEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              ++   FK     VK+R    P    +  N   ++  FE+   GVA GQA V Y  D 
Sbjct: 276 -NKSLPSNFKTGTYMVKVRYRSTPTKAKISLNHQTIHATFEEPVYGVALGQALVIYEKDC 334

Query: 373 NEARVLGGGIISGS 386
               VLGGG+I+ S
Sbjct: 335 ----VLGGGVITKS 344


>gi|325689331|gb|EGD31337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK115]
          Length = 373

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/379 (35%), Positives = 197/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ +   V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+F++ +  V  GQA VFY  D  
Sbjct: 299 -MPEEFTIE---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + ++  V
Sbjct: 353 --ECLGGGLIDRAYKNGQV 369


>gi|293977825|ref|YP_003543255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri DMIN]
 gi|292667756|gb|ADE35391.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri DMIN]
          Length = 380

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 195/391 (49%), Gaps = 43/391 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN          C   +D  DA  V  
Sbjct: 5   RVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNFD------NKCPWREDSIDAMLVSQ 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ +  Y+ D  + ++N +I      Y  G TP P + CN  +KF   L  +  L +D +
Sbjct: 59  SLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFLKSDFI 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R +  + ++GK    +   +D  +DQSYFL    + Q+    FPLG + K+ VR
Sbjct: 119 ATGHYVRKKE-INENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLNKKEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------------ 249
           ++A +  L  A+K DSQ ICF+ + K+ + +K+  A    +G I+ +N            
Sbjct: 178 EIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLA--EKKGIIIEINKNSHIFKYKQNK 235

Query: 250 ------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG--- 293
                       G+I+G H G   +T GQR+GL +     PLFV+  D   + + VG   
Sbjct: 236 LFYKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILYVGMGK 295

Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE 353
               L    I +++ N       +       +C ++ R +     ++ + ND  +YV+FE
Sbjct: 296 NHPGLYTKVICIKKYNIHWINKKKIKTKIEVECRIRYRQNFKKATLYKKNND--LYVEFE 353

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             ++ V  GQ  V+Y ++     V+G G+IS
Sbjct: 354 IPQLAVNGGQFIVWYINNE----VIGSGLIS 380


>gi|126207646|ref|YP_001052871.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae
           L20]
 gi|205811077|sp|A3MYN0|MNMA_ACTP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126096438|gb|ABN73266.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 389

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+  ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDDPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|81428407|ref|YP_395407.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564381|sp|Q38XI3|MNMA_LACSS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78610049|emb|CAI55098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 379

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 185/372 (49%), Gaps = 25/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G C A +D  D  +V
Sbjct: 6   NTRVVVGMSGGVDSSVTALLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYEDVAKV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    +L AD
Sbjct: 63  ASKIGIPYYSVNFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEVKFKAFLDYAMELDAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY +    +  D      M R  D  +DQ+YFL A +Q QL    FP+G M+K  
Sbjct: 123 FIAMGHYAQ----IERDENGIAHMLRGGDSNKDQTYFLSALSQDQLQKSMFPIGHMQKSE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G+
Sbjct: 179 VRRLAEEAGLATAKKKDSTGICFIGERNFKQFLGEYLP--AQPGKMMTVDGLEKGTHDGL 236

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           + YTIGQR GLG+       +P FVV  D   + + VG     E L   ++   ++ W+ 
Sbjct: 237 MYYTIGQRSGLGIGGGGESNDPWFVVGKDLEQNILYVGQGYHNELLYADQLDASKMTWIT 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
                D   D F C  K R  Q  V + V    +    V F+     +  GQA VFY   
Sbjct: 297 P---VDHGTD-FHCTAKFRYRQQDVGITVHMTSETTATVVFDAPVRAITPGQAVVFY--- 349

Query: 372 SNEARVLGGGII 383
            + A  LGGG I
Sbjct: 350 -DGAECLGGGTI 360


>gi|319940179|ref|ZP_08014532.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
           1_2_62CV]
 gi|319810650|gb|EFW06980.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
           1_2_62CV]
          Length = 373

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 25/383 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R++    +DG     M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYARAKR--DEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 AIAEKAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++   
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYNDNLMSTSLDASQVHFTRK 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V    D   V+F + +  +  GQA VFY  +  
Sbjct: 299 MPAEFTM----ECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAVEESL 396
               LGGG+I  + +   +++ +
Sbjct: 353 --ECLGGGLIDNAYKDGKLQQYI 373


>gi|269793188|ref|YP_003318092.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100823|gb|ACZ19810.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 346

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 173/351 (49%), Gaps = 26/351 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           V MSGGVDSSV A +LK +G+  +GVTL +  S             + V  ARR  + + 
Sbjct: 8   VLMSGGVDSSVTAMILKGEGHRPLGVTLLMSPSSSECS--------RSVQLARRTAEILG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLA 142
           + H V D  + FR  V+  F + Y AG TP PC DCNR VK   L     ++G D   +A
Sbjct: 60  IRHTVLDLRDLFRRHVMDKFRTEYMAGRTPNPCSDCNRNVKLGGLAERLDRMGLDGIPMA 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    + D       M   +D  RDQSYFL    +  +  L FPLG M KE VR 
Sbjct: 120 TGHYAR---ILKDPAGAHLAMG--LDHRRDQSYFLAEVPKGIIRRLMFPLGGMTKEQVRL 174

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L    ++DS D CFV+ G Y +V+  +   I  +G IV L G +LG H G   +
Sbjct: 175 LAEEARLPARREADSMDSCFVEDGDYREVIGPV---IDSQGPIVDLRGNVLGIHQGFHRF 231

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLGV+  E L+V  +D  +  V+V PR+ L    +     NWL +G        
Sbjct: 232 TVGQRKGLGVSSTEALYVKRIDPPT--VVVAPRDRLMERHVTASGGNWLEEGDLR----C 285

Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV-GVASGQACVFYTSD 371
           G +   K RS   P P  V+    D + V F    V     GQ  V Y  D
Sbjct: 286 GAQLLGKTRSQGRPSPCTVEEVEGDRIRVLFHGEGVFAPCPGQRLVLYRPD 336


>gi|328945150|gb|EGG39305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1087]
          Length = 373

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 199/380 (52%), Gaps = 25/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++
Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + + E+  ++   C  K R  Q    V V    D   V+F++ +  +  GQA VFY  D 
Sbjct: 298 E-MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAAVNFDQPQRAITPGQAVVFYDGD- 352

Query: 373 NEARVLGGGIISGSKRSDAV 392
                LGGG+I  + ++  V
Sbjct: 353 ---ECLGGGLIDRAYKNGQV 369


>gi|325285134|ref|YP_004260924.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489]
 gi|324320588|gb|ADY28053.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489]
          Length = 396

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 202/401 (50%), Gaps = 45/401 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  GYDVIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   KVVVGLSGGVDSSVTAYLLKEQGYDVIGLFMKNWHDDSVT-ISNECPWLEDSNDALIVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D    ++  ++    + Y  G TP P V CNR +KF   + +  QLGAD +
Sbjct: 62  KLGIPFQTVDLSAEYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMQLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   ++ ++GK    +    D  +DQSYFL   +Q+QL    FP+GD+ K  VR
Sbjct: 122 ATGHYCRKTSFINEEGKEIHQLLAGKDGNKDQSYFLCQLSQEQLSKTLFPIGDLLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFV---------------QQGKYFDV---VKRINAGI---A 240
            +A +  L  ADK DSQ +CF+               +QG   +V   +++ N  I   A
Sbjct: 182 KIAADNDLITADKKDSQGLCFIGKVRLPDFLQQKLKPKQGVIVEVSSSLEQYNNAIPEFA 241

Query: 241 LEGD---------IVHLN-GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
            + D         + +LN G+++G H G   +T GQR+GL V    EPLFV+  D + + 
Sbjct: 242 TKEDELAFYATKPVYNLNDGKVVGEHQGAHYFTKGQRKGLAVGGTKEPLFVIETDVDENV 301

Query: 290 VIVGP-RESLEVHRIYL----REINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
           +  G  ++   ++R  L     E++W+  D   E  V +  +   +IR  Q      + +
Sbjct: 302 IYTGQGKKHPGLYRKTLFVSNEELHWVRTDMALE--VDETMEVMARIRYRQALQKATLYK 359

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            D G+YVDF++ +  +  GQ   ++  D     ++G G+IS
Sbjct: 360 VDTGLYVDFKEEQSAMTEGQFVAWHIGD----ELIGSGVIS 396


>gi|205822104|sp|Q65VV2|MNMA_MANSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 389

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L++  L +N K  +V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLSAEQLAENAKK-KVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R R   GDD   R  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQR----RGLGVAMGE-PLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ YT+GQR     G    M E P +V   D  ++ +IV       +L
Sbjct: 247 TVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +  R+++W+        + +  +C VK R  Q  +P  +Q  +D+ + V F++ ++
Sbjct: 307 LSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|261339434|ref|ZP_05967292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318240|gb|EFC57178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 370

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 199/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A  + L  A K DS  ICF+ + K+ + + R     A  G IV ++G  +G+H G++
Sbjct: 180 RKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ +IV      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + V    +C VK R  Q  +P  V   +DD + V F++    V  GQ+ VFY+
Sbjct: 296 VD----REPVKGTLRCTVKTRYRQTDIPCTVTALDDDRIDVRFDEPVAAVTPGQSAVFYS 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEI----CLGGGIIE 362


>gi|330833760|ref|YP_004402585.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
 gi|329307983|gb|AEB82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
          Length = 419

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 197/372 (52%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 54  RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 110

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 111 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 170

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 171 ATGHY--AQVSRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 226

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G H G++ 
Sbjct: 227 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 284

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ESL    +   ++++  D
Sbjct: 285 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 344

Query: 314 GLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 + + FK  C  K R  Q    V V+   D   V F + +  +  G+A VFY  D
Sbjct: 345 ------MPEEFKLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGKAVVFY--D 396

Query: 372 SNEARVLGGGII 383
             E   LGGG+I
Sbjct: 397 GQEC--LGGGMI 406


>gi|295394424|ref|ZP_06804648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972776|gb|EFG48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 387

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/400 (35%), Positives = 200/400 (50%), Gaps = 47/400 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKILAAMSGGVDSAVAAARAVDAGHEVVGVHLAL-SRMPGTMRTGSRGCCTIEDSRDAHR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + +  YV+D+ ERF+  ++  F + Y+ G TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VAGMLGIPFYVWDFSERFKEDIVDDFIAEYSQGRTPNPCMRCNERIKFAALLDRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKK 197
           D +ATGHY  + +    DG     + R +D+ +DQSY L   T+ QL    FP+G    K
Sbjct: 120 DAVATGHY--AEIVYDQDGHPE--LHRGVDMNKDQSYVLGVLTEDQLRHCYFPIGASASK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256
             VR  A + G  +A+K DS DICF+  G   D    +   I +  G I    G  LG H
Sbjct: 176 ADVRAEAADRGFPVANKPDSYDICFIPDG---DTKAWLADKIPMRPGLIKDQEGNALGEH 232

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G + +TIGQR+GL +    A G+P +VV +D  ++ V VG RE+L V R+      W G
Sbjct: 233 DGAMTFTIGQRKGLALERPAADGKPRYVVDIDARNNTVTVGGREALSVDRLEGIRATWCG 292

Query: 313 D-----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-------------------DGV 348
                 G  ED  +D   C V+IR+  +PV   V   D                     +
Sbjct: 293 QPAQNMGDSEDTALD---CEVQIRAHAEPVSARVWLGDVVTQAPESEYNVPTPRPAGQTL 349

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           +V  ++   GVA GQ  V Y       RVLG   I  + R
Sbjct: 350 HVAVKEPLSGVAPGQTMVIYEG----TRVLGQATIDRANR 385


>gi|255994055|ref|ZP_05427190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saphenum ATCC 49989]
 gi|255993723|gb|EEU03812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saphenum ATCC 49989]
          Length = 348

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 198/380 (52%), Gaps = 40/380 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +D+     +V V  SGGVDS+    LLK  GYDV  V L++  +             +D+
Sbjct: 1   MDRLGDKTKVAVGFSGGVDSTAACLLLKEKGYDVHPVYLRMGEA-------------EDI 47

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +++ + I +   V D  +RF N+V+  F  +Y  G TP PC+ CN  VKF  L+   
Sbjct: 48  SELKKIANDIGLELKVLDLTDRFNNSVVDNFKKAYMNGMTPNPCIVCNPLVKFRGLMDFA 107

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G D++ATGHY R  +  GD+     ++CR  + ++DQSY L+         L  PLG
Sbjct: 108 DDNGIDLIATGHYARI-VKNGDN----PVLCRGRNAQKDQSYMLYGLDSNVFERLILPLG 162

Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQ----GKYFDVVKRINAGIALEGDIVHL 248
           +   KE +R++ R   +  ++K DSQ+ICF++Q     K+F            EG+ V  
Sbjct: 163 EYGNKEDIRNILRTNEIINSEKPDSQEICFLKQDESYKKFFP---------EREGEFVDA 213

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G ILGRH GI N+T+GQR+GLG+   +P++V+ +  +++RV++G  E L   R  + ++
Sbjct: 214 EGNILGRHRGIHNFTVGQRKGLGITFSKPMYVLGIAASTNRVMLGSEEELYKERATITDM 273

Query: 309 NWLGDGL---FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            +LG+ +    +DA    ++  V+  S++  +     +  D + + F +    +A GQ+ 
Sbjct: 274 KYLGNDISKCTDDAHKGLYRAKVRYSSAEYEIKEINLKGSD-LEIVFNEPVRAIAPGQSL 332

Query: 366 VFYTSDSNEARVLGGGIISG 385
           V Y  D     V+ GGII G
Sbjct: 333 VVYCRDV----VILGGIIVG 348


>gi|52424356|ref|YP_087493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52306408|gb|AAU36908.1| TrmU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 400

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L++  L +N K  +V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 29  KLSAEQLAENAKK-KVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 84

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 85  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 144

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R R   GDD   R  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 145 AFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQVG 199

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 200 QSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 257

Query: 247 HLNGQILGRHNGIINYTIGQR----RGLGVAMGE-PLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ YT+GQR     G    M E P +V   D  ++ +IV       +L
Sbjct: 258 TVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSAL 317

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +  R+++W+        + +  +C VK R  Q  +P  +Q  +D+ + V F++ ++
Sbjct: 318 LSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQI 373

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 374 AVTPGQSAVFYQGEV----CLGGGVIE 396


>gi|322386456|ref|ZP_08060085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus cristatus ATCC 51100]
 gi|321269542|gb|EFX52473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus cristatus ATCC 51100]
          Length = 373

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/386 (34%), Positives = 196/386 (50%), Gaps = 39/386 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G+H G++ 
Sbjct: 181 AVAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMDGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREI 308
           YTIGQR GLG+        EP FVV  D + + + VG           SL+  +++    
Sbjct: 239 YTIGQRGGLGIGGQQGGDNEPWFVVGKDLSQNILYVGQGFYHDHLMSTSLDASQVH---- 294

Query: 309 NWLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
                  F   + + F  +C  K R  Q    V V    D   V+F++ +  V  GQA V
Sbjct: 295 -------FTKEMPEEFTMECTAKFRYRQPDSKVTVTVKGDKAIVNFDQPQRAVTPGQAVV 347

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392
           FY  +      LGGG+I  + ++  V
Sbjct: 348 FYDGE----ECLGGGLIDRAYKNGQV 369


>gi|212692213|ref|ZP_03300341.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855]
 gi|212665090|gb|EEB25662.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855]
          Length = 351

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 22/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGG DSSV A LL+  GY+V G+T + Y        KG+    + + DAR +C+
Sbjct: 9   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYE-------KGN--DTEYLEDARTLCE 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H  +D    FR  +I  F + Y AG TP+PC  CN  +K+  L  ++ ++G    
Sbjct: 60  RLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRISDEMGIYHF 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R RL  G        +    D ++DQS+FL+   Q+ L  +  P+G++ K  VR
Sbjct: 120 ATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174

Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A E G L  A K DS  +CF        + K +  G  L G      G  + RH G  
Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL + +   +FV  +    ++VI+   ++LE   + L+E       L  +  
Sbjct: 235 FYTIGQRRGLDIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITNPALLLNK- 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D     ++ R   +   V +Q  D+ ++V   +    +A GQA  FY  D     VLGG
Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347

Query: 381 GII 383
           GII
Sbjct: 348 GII 350


>gi|21231412|ref|NP_637329.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768534|ref|YP_243296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991657|ref|YP_001903667.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24638306|sp|Q8P9A1|MNMA_XANCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81305494|sp|Q4UUJ7|MNMA_XANC8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829008|sp|B0RT32|MNMA_XANCB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21113079|gb|AAM41253.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573866|gb|AAY49276.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733417|emb|CAP51618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           methyltransferase [Xanthomonas campestris pv.
           campestris]
          Length = 378

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +V +SGGVDSSV A  L +DG  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RTIVGVSGGVDSSVAAWKLAQDGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V   G R R++ R  D  +DQSYFL    Q QL    FP+G+++K ++R
Sbjct: 121 ATGHYAR----VAHLGGRWRLL-RGADRNKDQSYFLHQLGQSQLAATLFPIGELEKSALR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG + V+FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVTVQDDGTLQVNFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 EE--CLGGAVIAAT 359


>gi|319775956|ref|YP_004138444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3047]
 gi|317450547|emb|CBY86764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3047]
          Length = 418

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 204/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 61  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+    FP+G ++K  V
Sbjct: 178 IATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGKIEKPIV 232

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDNEIIGRHDGLM 290

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVKNNELIVAQGHDHPR--LFSKGLIASQLHW 348

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +        + +  +C VK R  Q  +   ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 349 VD----RQPIRELLRCTVKTRYRQQDISCAIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 405 GEV----CLGGGIIA 415


>gi|319935498|ref|ZP_08009933.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1]
 gi|319809529|gb|EFW05946.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1]
          Length = 379

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 193/376 (51%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ +SGGVDS+V A LLK  GY+VI V ++ ++S   +   G+       C   +D  
Sbjct: 6   KVVLGLSGGVDSAVAAYLLKEQGYEVICVFMRNWDSSLNNDILGNPTNNNEICPQEEDYN 65

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA++V + + +     D+ + + + V   F   YA G TP P + CN+ +KF   L   +
Sbjct: 66  DAKKVAEHLGLELRRVDFIKEYWDHVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 125

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            + AD +ATGHY R   ++G D     +M R +D  +DQ+YFL    Q QL    FP+G+
Sbjct: 126 SIDADYIATGHYARVEHHLGQDS----LMLRGVDNNKDQTYFLCQLNQLQLQSSLFPIGE 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           + K  VR LA ++ L +A K DS  ICF+ +  + + +K  N   A  G +V +   QI+
Sbjct: 182 LTKPEVRKLAEDLNLPVAHKKDSTGICFIGERDFREFLK--NYIPAKNGHMVDIQTKQIV 239

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPR-ESLEVHRIYLREIN 309
           G H GI+ YTIGQR+GL +   G+  FVV    D+N   V  G + + L      + ++N
Sbjct: 240 GEHQGIMYYTIGQRKGLNIGGPGDAWFVVGKEYDQNILYVCQGDQNDWLMSEGALITDVN 299

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W+     E      F C  K R  Q    V +   D+  +YV F++    V  GQA VFY
Sbjct: 300 WIMSQKPESE----FSCTAKFRYRQKDNDVSIHFIDETTIYVTFKQPIKAVTPGQAAVFY 355

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGG I 
Sbjct: 356 NDDV----CLGGGTIE 367


>gi|125719134|ref|YP_001036267.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sanguinis SK36]
 gi|166235087|sp|A3CRB2|MNMA_STRSV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|125499051|gb|ABN45717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Streptococcus sanguinis SK36]
          Length = 373

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 198/380 (52%), Gaps = 25/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++
Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + + E+  ++   C  K R  Q    V V    D   V+F+K +  +  GQ  VFY  D 
Sbjct: 298 E-MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQGVVFYDGD- 352

Query: 373 NEARVLGGGIISGSKRSDAV 392
                LGGG+I  + ++  V
Sbjct: 353 ---ECLGGGLIDRAYKNGQV 369


>gi|85860139|ref|YP_462341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
 gi|123517192|sp|Q2LVR6|MNMA2_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|85723230|gb|ABC78173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
          Length = 342

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 174/335 (51%), Gaps = 30/335 (8%)

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           +G     AR     + +  +V D  E F   ++      Y    TP PCV CNR +KF  
Sbjct: 11  SGSSEARARHAAHQLGIPLHVADVTETFDEEIVQYLTREYLVARTPNPCVVCNRKIKFKT 70

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL    +L    +ATGHY R      +    R  + R +D  +DQSYFLF   Q+QL  +
Sbjct: 71  LLYYADRLACHFVATGHYAR---VFHNRQTGRYALLRGLDQAKDQSYFLFLLGQEQLSRI 127

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVH 247
            FPLG++ K+ VR +A  MG++   + +SQ+ICF+    Y   ++R + +  A+ GDIV 
Sbjct: 128 LFPLGELTKKEVRSVALTMGVEAVREKESQEICFIPDDDYKTFIERHMGSSPAIPGDIVD 187

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G++LG HNGI ++TIGQR+GL +A   P +V+ +D+  +RV+VG  E      + +  
Sbjct: 188 RSGRLLGSHNGIHSFTIGQRKGLHIAAPRPYYVLAIDREKNRVVVGHEEEQGFSGLIVSG 247

Query: 308 INWLGDGLFEDAVVDGFKCFVKIR-------------SSQDPV------PVFVQRNDDGV 348
           ++W+ DG  E    + F+  V+IR             S+ D +      P   +   D +
Sbjct: 248 VSWI-DG--ESPREEVFETLVRIRYRHRGVSSVVCPLSAGDEICPATGRPADHEEAGDKL 304

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + F++ +  VA GQA VFY+ D    RV+GGG I
Sbjct: 305 IIRFQEPQRAVAPGQAAVFYSDD----RVIGGGWI 335


>gi|240014473|ref|ZP_04721386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae DGI18]
 gi|240120995|ref|ZP_04733957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID24-1]
 gi|268599754|ref|ZP_06133921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae MS11]
 gi|268583885|gb|EEZ48561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae MS11]
          Length = 383

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 190/382 (49%), Gaps = 24/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377


>gi|169350064|ref|ZP_02867002.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552]
 gi|169293277|gb|EDS75410.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552]
          Length = 387

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/397 (34%), Positives = 205/397 (51%), Gaps = 37/397 (9%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  SE TR++           RVV+ +SGGVDS+V A LLK+ GY+VIGV ++ ++S+  
Sbjct: 3   LYASEVTRMSK----------RVVLGLSGGVDSAVAAYLLKKQGYEVIGVFMRNWDSQLN 52

Query: 61  SKRKGS-------CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
           +   G+       C   QD  DA+ V   + +     D+ + + + V   F   Y  G T
Sbjct: 53  NDILGNPTNDNDICPQEQDYNDAKAVAKCLGIEIKRVDFIKEYWDNVFTYFLDEYRKGRT 112

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P P + CN+ +KF   L+  + L AD +ATGHY R    V     +  IM + +D  +DQ
Sbjct: 113 PNPDILCNKHIKFKAFLNYAKTLNADYIATGHYAR----VVHSENKDSIMLKGIDNNKDQ 168

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           +YFL    QQQL +  FPLG++ K+ VR LA E+ L +ADK DS  ICF+ +  + + ++
Sbjct: 169 TYFLCQLNQQQLQNSLFPLGEIDKKEVRRLAHELQLPVADKKDSTGICFIGERDFKEFLQ 228

Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY---LDKNSSR 289
             N   A  G +V +  G I+G H+GI+ YTIGQR+GLG+      + V     DKN   
Sbjct: 229 --NYIPAQSGKMVDIETGDIIGEHSGIMYYTIGQRKGLGIGGPGGAWFVVGKDYDKNVLY 286

Query: 290 VIVG-PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDG 347
           V  G  ++ L      + ++NW+      +   +   C  K R  Q   P+ ++  ++D 
Sbjct: 287 VCQGDQKDWLYSSGALISDVNWIA----SNKPTEKISCNAKFRYRQADNPIKLEFIDEDK 342

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           VY+ F+K    V  GQA VFY  D      LGGG I 
Sbjct: 343 VYLTFDKPVKAVTPGQAAVFYDGDI----CLGGGTIE 375


>gi|160883140|ref|ZP_02064143.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483]
 gi|299148187|ref|ZP_07041249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|156111365|gb|EDO13110.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483]
 gi|298512948|gb|EFI36835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 361

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEEKSGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +    
Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + + F +    +A
Sbjct: 276 ---------QDKMVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----KRVLGGAFIASQR 349


>gi|268680794|ref|YP_003305225.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618825|gb|ACZ13190.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 339

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 194/369 (52%), Gaps = 36/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ + MSGG+DSS  A LLK +G++V+G+ L+L++  K          G ++ +  +V 
Sbjct: 1   MKIALLMSGGIDSSYCAYLLKEEGHEVVGIYLKLHDDDKKH--------GVNIANIEKVS 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  ++ D +  F+  +   F  SY  G TP PC  CN  +KF        + G + 
Sbjct: 53  QHLGIKTHIIDAKALFKEQIYDYFVRSYEQGLTPNPCAFCNPKMKFGFAFEKALEFGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +     +G     +    D  +DQSYFLF   ++ +  + FPLG+MKKE +
Sbjct: 113 IATGHYARVK-----EGH----IQEAKDKSKDQSYFLFGLKREVIEKIIFPLGEMKKEEI 163

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + +A E    +G  +    DSQ+ICFV    Y D++++ +  +  +G I   +G+++G H
Sbjct: 164 KPIALEKLPWLG-SLESYKDSQEICFVTD-TYIDILQK-HLNVDQKGLIKDTSGKVIGEH 220

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+GL +    +P FVV +D  ++ VI G +E L   R+  +  +     L
Sbjct: 221 KGYMHYTIGKRKGLTINGAHDPHFVVGIDAKTNTVIAGKKEELLQKRVVAQNFS-----L 275

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            ED     +   V+ RS Q  V   V+   D +  + E+   G+ASGQA V Y +D    
Sbjct: 276 AEDFKEGTYGVKVRYRSPQ--VKAHVKIEGDKIITELEEGVYGLASGQALVVYQND---- 329

Query: 376 RVLGGGIIS 384
            VLGGG I 
Sbjct: 330 LVLGGGWIE 338


>gi|205829105|sp|Q1JED4|MNMA_STRPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 194/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V   +D   V F + +  +  GQA VFY  D 
Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|145589976|ref|YP_001156573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|205816900|sp|A4SZU5|MNMA_POLSQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145048382|gb|ABP35009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 370

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 183/371 (49%), Gaps = 25/371 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A +LK  G++VIG+ ++ +      +    C A QD  D   V D
Sbjct: 16  KVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDNDEY---CSARQDWLDVVSVAD 72

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +R  V   F   YAAG TP P V CN  +KF   L     LGAD +
Sbjct: 73  MIGIDVEAVNFAAEYRERVFADFLCEYAAGRTPNPDVLCNAEIKFKAFLDHAMSLGADAI 132

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +G R +++ + +D  +DQSYFL   TQQQL  + FPLG++ K  VR
Sbjct: 133 ATGHYARVR----HEGGRVQLL-KAVDASKDQSYFLHRLTQQQLSKVMFPLGEIPKTEVR 187

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++GL  A K DS  ICF+ +  + + + R    +   G I    G+ +G H G+  
Sbjct: 188 KIAEQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRVP--GPIKTPEGKTVGEHMGLAF 245

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           +T+GQR+G+G+       G+  +V   D  ++ + V        L  +++   + +W+  
Sbjct: 246 FTLGQRKGIGLGGSQDGNGDAWYVARKDMANNTLYVAQGHEHPWLLANKLSAVDASWVSG 305

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E      +    + R +          + +   + F +++  V  GQ+ V Y  D  
Sbjct: 306 AAPEPG---SYSAKTRYRQTDSACTYIADIDTNNFSLSFPEAQWAVTPGQSAVLYDGDI- 361

Query: 374 EARVLGGGIIS 384
               LGGGIIS
Sbjct: 362 ---CLGGGIIS 369


>gi|319898139|ref|YP_004136336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3031]
 gi|317433645|emb|CBY82030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3031]
          Length = 383

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 206/375 (54%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VCD
Sbjct: 26  KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 83  KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 143 IATGHYVRR---TGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G++
Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 255

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GL +     A  +  +VV  D  ++ +IV      PR  L    +   +++W
Sbjct: 256 YHTLGQRKGLDIGGLKNAGDKAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY 
Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII+
Sbjct: 370 GEV----CLGGGIIA 380


>gi|327463811|gb|EGF10127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1057]
          Length = 373

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 194/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKTEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+F++ +  V  GQA VFY  D  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352

Query: 374 EARVLGGGII 383
               LGGG+I
Sbjct: 353 --ECLGGGLI 360


>gi|324991889|gb|EGC23812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK405]
 gi|324996221|gb|EGC28131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK678]
 gi|327458514|gb|EGF04864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1]
 gi|327471584|gb|EGF17027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK408]
 gi|327490314|gb|EGF22101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1058]
          Length = 373

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ + G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+F++ +  V  GQA VFY  D  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + ++  V
Sbjct: 353 --ECLGGGLIDRAYKNGQV 369


>gi|148996542|ref|ZP_01824260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP11-BS70]
 gi|307066804|ref|YP_003875770.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Streptococcus pneumoniae AP200]
 gi|147757117|gb|EDK64156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP11-BS70]
 gi|306408341|gb|ADM83768.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus pneumoniae AP200]
          Length = 373

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 195/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G H G++ 
Sbjct: 181 RLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV   L KN   V  G   +SL    +   ++++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    +   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGQV 369


>gi|166712080|ref|ZP_02243287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 378

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIAFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 KE--CLGGAVIAAT 359


>gi|325527989|gb|EGD05219.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia sp. TJI49]
          Length = 387

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 181/380 (47%), Gaps = 40/380 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTPDGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
               +   DGF C  K R  Q           P P    R      + F+ ++  V  GQ
Sbjct: 295 ----EPPADGFACGAKTRYRQADAACAYGTATPGPAGEAR----FSLAFDDAQWAVTPGQ 346

Query: 364 ACVFYTSDSNEARVLGGGII 383
           + V Y  +      LGGGII
Sbjct: 347 SAVLYDGEI----CLGGGII 362


>gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Allochromatium vinosum DSM 180]
 gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Allochromatium vinosum DSM 180]
          Length = 371

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 192/379 (50%), Gaps = 30/379 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + P   RV+V +SGGVDS++ A  L   GY V  + ++ +    A   +G C A +D+ D
Sbjct: 6   QTPSAQRVIVGLSGGVDSAIAAHRLLEQGYAVEALFMKNWEEDDA---EGYCAAAEDLAD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V + + +  +  ++   + + V   F   Y A  TP P V CNR +KF+  L     
Sbjct: 63  ARAVAERLGIRLHTVNFSAEYWDRVFEYFLREYQALRTPNPDVLCNREIKFAAFLDHALG 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA+ +ATGHY R    V  D +    + R +D ++DQ+YFL    Q+QL    FPL D+
Sbjct: 123 LGAEAIATGHYAR----VVADAQGGYHLHRAVDADKDQTYFLHLLDQEQLSRALFPLADL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILG 254
            K  VR LAR +GL  A K DS  ICF+ + ++ D + R    +  E G I    G  LG
Sbjct: 179 TKGEVRALARRLGLANAAKKDSTGICFIGERRFSDFLARY---LPREPGPIETPEGVRLG 235

Query: 255 RHNGIINYTIGQRRGL---GVAMGE--PLFVVYLDKNSSRVIV--GPRESLEVHR-IYLR 306
            H+G+  YT+GQR+GL   GV+ G   P +V   D  ++R+IV    R  L +   +   
Sbjct: 236 EHHGLAYYTLGQRQGLGIGGVSQGREAPWYVAVKDSANNRLIVVQDSRHPLLMSTGLEAL 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQA 364
           + +W+     E      F+C  ++R  Q P+     V+   DG  V F++ +  V  GQ+
Sbjct: 296 QPHWISGRAPETP----FRCLARLRHRQ-PLQACELVEIGADGCRVRFDEPQRAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY     E   LGG +I
Sbjct: 351 VVFY----QETECLGGAVI 365


>gi|322515062|ref|ZP_08068070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322118942|gb|EFX91119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 389

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 18  KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 74  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133

Query: 128 DLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R     GDD    +++C  +D  +DQSYFL+  + +Q+ 
Sbjct: 134 AFLEYAAKDLGADYIATGHYVRRS---GDD-NNAQLLC-GLDANKDQSYFLYTLSHKQVG 188

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD+ K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 189 QSLFPVGDIGKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       +L
Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357
               +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F++ ++
Sbjct: 307 LSSGLIATQLHWVD----RQPIRENVRCTVKTRYRQTDIACEIQPMDDDTIRVIFDEPQI 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGG+I 
Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|226940740|ref|YP_002795814.1| tRNA-specific 2-thiouridylase MnmA [Laribacter hongkongensis HLHK9]
 gi|226715667|gb|ACO74805.1| TrmU [Laribacter hongkongensis HLHK9]
          Length = 359

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 183/373 (49%), Gaps = 26/373 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  R+VV +SGGVDSSV A LLK+ G++VIGV +Q +     S+    C   QD  DA  
Sbjct: 4   KKKRIVVGLSGGVDSSVTAYLLKQQGHEVIGVFMQNWEDDNDSE---YCSIKQDSLDAMS 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +   + ++   ++  V   F   Y+AG TP P V CN  +KF   L    QLGA
Sbjct: 61  VADLLGIDMEIVNFAREYKERVFQYFLDEYSAGRTPNPDVLCNAEIKFKAFLDYAMQLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R    +  DG  R  + + +D  +DQSYFL+     QL    FPLGD+ K 
Sbjct: 121 DCIATGHYARK---LERDG--RHYLLKGVDPGKDQSYFLYRLVPAQLEKALFPLGDLHKT 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+GL  A K DS  ICF+ +  +   ++R        G +V   G+++G+H G
Sbjct: 176 EVRRIAGEIGLPNARKKDSTGICFIGERPFRAFLQRYLP--MHPGAMVTPEGRVVGQHEG 233

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIYLRE-INW 310
           ++ YT+GQR+GL +       GEP FV   D  +N   V+ G    L +  +   E ++W
Sbjct: 234 LMYYTLGQRKGLNIGGSKDGNGEPWFVAGKDIPRNELIVVQGHDHPLLLKPVLEAEQLSW 293

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                   A  DG           D        +   + + F  S+  V  GQ+ V Y  
Sbjct: 294 ----TLGAAPDDGAYAAKNRYRMPDAACELTNLSSGRIRLAFADSQWSVTPGQSAVLYDG 349

Query: 371 DSNEARVLGGGII 383
           D      LGGG+I
Sbjct: 350 DV----CLGGGVI 358


>gi|325686453|gb|EGD28482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK72]
          Length = 373

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+F++ +  +  GQA VFY  D  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAITPGQAVVFYDGD-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + ++  V
Sbjct: 353 --ECLGGGLIDRAYKNGQV 369


>gi|94991468|ref|YP_599568.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10270]
 gi|94544976|gb|ABF35024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10270]
          Length = 379

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 194/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 13  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 70  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 130 VATGHYAQ----VKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V   +D   V F + +  +  GQA VFY  D 
Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY--DG 357

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 358 KEC--LGGGMI 366


>gi|323350805|ref|ZP_08086464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis VMC66]
 gi|322122979|gb|EFX94682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis VMC66]
          Length = 373

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 198/380 (52%), Gaps = 25/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + N V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +++    DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHY--AQIKRDQDGLVH--MLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++
Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  + 
Sbjct: 298 E-MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE- 352

Query: 373 NEARVLGGGIISGSKRSDAV 392
                LGGG+I  + R   V
Sbjct: 353 ---ECLGGGLIDNAYRDGKV 369


>gi|225871462|ref|YP_002747409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. equi 4047]
 gi|254811462|sp|C0MB53|MNMA_STRE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225700866|emb|CAW95613.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. equi 4047]
          Length = 374

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 191/372 (51%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 9   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y +G TP P V CN+ +KF   L     LGAD +
Sbjct: 66  QIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    +  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 126 ATGHYAQ----IKRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLGHLQKSEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ +  +   +       A +G ++ ++G+ +G H G++ 
Sbjct: 182 AIAEQAGLATAKKKDSTGICFISEKNFKTFLSHYLP--AQKGRMMTVDGRDMGEHAGLMY 239

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I     
Sbjct: 240 YTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVIQ---- 295

Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             F   V + F  +C  K R  Q    V V    D   V F + +  +  GQA VFY  D
Sbjct: 296 --FTREVPEEFTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAVVFY--D 351

Query: 372 SNEARVLGGGII 383
            +E   LGGGII
Sbjct: 352 GHEC--LGGGII 361


>gi|298384831|ref|ZP_06994390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298261975|gb|EFI04840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 362

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AYIATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDILKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKIKVREYLAEKGYEAKSKEGESMEVCFI-RGDYRDFLREQCPELDTEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +    
Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   VA
Sbjct: 276 ---------QDRIVDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAVA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|110005181|emb|CAK99508.1| probable trna 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Spiroplasma citri]
          Length = 377

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 196/379 (51%), Gaps = 32/379 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VVV +SGGVDSSV   LL++ GYDV G+ ++ ++S+  +   G+       C    D  
Sbjct: 3   KVVVGLSGGVDSSVSLYLLQQAGYDVEGLFMRNWDSQLNNDILGNKAINNMICPQELDYN 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA  V  T+ V  +  D+ + +   V   F S Y  G TP P + CN+ +KF+  L+   
Sbjct: 63  DAVNVSKTLQVPLHRADFIKEYWEYVFKHFISEYQKGRTPNPDILCNKYIKFNYFLNYAI 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               AD +A GHY R R    ++  +   + R +D ++DQ+YFL    Q QL    FPLG
Sbjct: 123 NNYHADFIAMGHYARVRF---NEELQEYQLLRGIDRDKDQTYFLSQLNQGQLSKTFFPLG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ K+ VR++A    L  A+K DS  ICF+ +  +   ++  N     +G+IV +   ++
Sbjct: 180 NLTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKIFLQ--NYIPNQDGNIVDIETKEV 237

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306
           +G HNG++ YTIGQRRGL +  M EP FV    KN  + I+   +S E   +Y     + 
Sbjct: 238 VGHHNGVMYYTIGQRRGLNLGGMSEPYFVA--GKNVEKNILYVAKSSEEKWLYSTSCLVT 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
           ++NW+    F +     F C  K R  Q  +PV +   ND+   V F  +   +  GQA 
Sbjct: 296 DVNWINT--FREK---EFNCTAKFRYRQKDIPVKITVLNDNKCLVQFATTVKAITPGQAS 350

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  +      LGGG+I+
Sbjct: 351 VFYVDEV----CLGGGVIN 365


>gi|152981022|ref|YP_001352063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janthinobacterium sp. Marseille]
 gi|205816857|sp|A6SUW6|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 372

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 185/379 (48%), Gaps = 29/379 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C   QD  DA  V D
Sbjct: 5   RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     ++   +++ V   F   Y AG TP P V CN  +KF   L     LGAD++
Sbjct: 62  VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMLLGADMI 121

Query: 142 ATGHYIRSR-LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R R +  G D  R  ++ + +D  +DQSYFL    Q QL    FPLG+++K  V
Sbjct: 122 ATGHYARVREVTSGPDAGRVELL-KAVDASKDQSYFLHRLNQAQLAKTLFPLGEIRKTEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ +  + + + R  +     G +    G I+G H G+ 
Sbjct: 181 RKIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLS--YQPGPMKTPEGVIVGEHVGLS 238

Query: 261 NYTIGQRRGLGV----------AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLRE 307
            YT+GQR+G+G+             EP +V   D   N+  ++ G     L    +   +
Sbjct: 239 FYTLGQRKGIGLGGMKSHKNTDGNSEPWYVARKDVATNTLYIVQGHDHPWLLSSELSAGQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           ++W+      + +V       K R  Q  V    + + DG  + F   +  V  GQ+ V 
Sbjct: 299 MSWVAGSPPSEELVS-----AKTRYRQADVACSQRSDADGFSLAFAAPQWAVTPGQSAVL 353

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y  D      LGGGII+ S
Sbjct: 354 YQGDV----CLGGGIINTS 368


>gi|240113689|ref|ZP_04728179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae MS11]
          Length = 367

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 187/371 (50%), Gaps = 24/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GAD +A
Sbjct: 67  VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVEQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG ++K  VR 
Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +G H G++ Y
Sbjct: 182 LAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTIGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P  +    +D+   + F++ +  V  GQ+ V Y  D      
Sbjct: 296 RPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAVLYDVDI----C 350

Query: 378 LGGGIISGSKR 388
           LGGGII  + +
Sbjct: 351 LGGGIIQTTDK 361


>gi|167912477|ref|ZP_02499568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 112]
          Length = 356

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 176/372 (47%), Gaps = 30/372 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y  D   
Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGDV-- 344

Query: 375 ARVLGGGIISGS 386
              LGGGII  +
Sbjct: 345 --CLGGGIIESA 354


>gi|163857039|ref|YP_001631337.1| tRNA-specific 2-thiouridylase MnmA [Bordetella petrii DSM 12804]
 gi|205811276|sp|A9IQK6|MNMA_BORPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163260767|emb|CAP43069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella petrii]
          Length = 376

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 188/380 (49%), Gaps = 29/380 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD+ DA  
Sbjct: 12  KGRRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDLLDAAS 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 69  VADLVGVDFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGA 128

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G  G+  +++ + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 129 EHIATGHYARVRAIAGAHGREYQLL-KALDGSKDQSYFLHRLNQAQLSRTLFPLGEIHKT 187

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257
            VR +A ++GL  A K DS  ICF+ +  + + + R    +  E GDI+   GQ +GRH+
Sbjct: 188 EVRRIAHDIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGDILTPQGQRVGRHH 244

Query: 258 GIINYTIGQR------------RGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLEVHRIY 304
           G+  YT+GQR            R  G A    +    L  N   V+ G     L  +R+ 
Sbjct: 245 GLSFYTLGQRKGLGVGGVKGSQRDDGTADAWYVARKDLQHNILYVVQGHDHPWLLSNRLQ 304

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
             + +W+     E   + G+    + R + D   V  Q +     + F + +  V  GQ+
Sbjct: 305 ALDASWVAGRAPE---LRGYGAKTRYRQA-DAACVLEQASQGAFELSFSQPQWAVTPGQS 360

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D      LGGGII+
Sbjct: 361 AVLYDGDV----CLGGGIIA 376


>gi|261363616|ref|ZP_05976499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria mucosa ATCC 25996]
 gi|288568144|gb|EFC89704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria mucosa ATCC 25996]
          Length = 367

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 194/383 (50%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +D+ + P +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MDITQQPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAIEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LGD++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+ V + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKEGRYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362


>gi|315657217|ref|ZP_07910101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492320|gb|EFU81927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 409

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 195/400 (48%), Gaps = 39/400 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL + SR  S+   S      + DA RV 
Sbjct: 8   KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  FA +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 68  DFLGVELQVWDLAERFNRVVMDSFAQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127

Query: 141 LATGHYIRSRLY---------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +ATGHY  +RL+               V +       + R   + +DQSY L     + L
Sbjct: 128 VATGHY--ARLWRPGQVGLIPVGVPPTVAEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 185

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
               FPLGD+  K + R  A  +G+ +A K DS DICF+  G     + R   G AL G 
Sbjct: 186 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GQ 243

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300
           IV  +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V
Sbjct: 244 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 303

Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDG--- 347
             I     +NWL D      G   +  +D     ++ R+   PV    V ++   DG   
Sbjct: 304 TEIQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPRAVHLESGTDGTKL 363

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V +       GVA GQ+ V Y   S   RV+    I+ +
Sbjct: 364 QVALPPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 403


>gi|126661854|ref|ZP_01732853.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Flavobacteria bacterium BAL38]
 gi|126625233|gb|EAZ95922.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Flavobacteria bacterium BAL38]
          Length = 395

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 197/402 (49%), Gaps = 48/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDLSEQYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +  + ++GK    +    D  +DQSYFL   +Q QL    FP+G++ K  VR
Sbjct: 122 ATGHYCR-KGTIEENGKEVFQLLAGKDDNKDQSYFLCQLSQDQLAKALFPIGELTKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV-------------------------------QQGKYFD 230
           ++A ++ L  A+K DSQ +CF+                               Q+  +F+
Sbjct: 181 EIATKLDLITAEKKDSQGLCFIGKVRLPEFLQQKLQPKEGIIVEIPADATVFNQEKPHFN 240

Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
             +   A  A   D + + G+++G+H G   +T GQR+GL V    EPLF++  D   + 
Sbjct: 241 SNEEAFAFEAKRIDYLKVPGKVMGKHQGAHYFTKGQRKGLNVGGTKEPLFIIETDVEKNI 300

Query: 290 VIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQ 342
           +  G     P    +   I   E++W+ + L   ++ +G   +   +IR  Q      + 
Sbjct: 301 IYTGQGNNHPGLFKKALFIANNEVHWIREDL---SLKEGETLEVMARIRYRQPLQKATLH 357

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  DG+YV FEK +  +  GQ   ++ +D     VLG G+I+
Sbjct: 358 QFKDGMYVVFEKPQSAITEGQFVAWHHND----EVLGSGVIA 395


>gi|315654863|ref|ZP_07907768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490824|gb|EFU80444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 51333]
          Length = 412

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 195/400 (48%), Gaps = 39/400 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL + SR  S+   S      + DA RV 
Sbjct: 11  KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  F  +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 71  DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 130

Query: 141 LATGHYIRSRLY---------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +ATGHY  +RL+               VG+       + R   + +DQSY L     + L
Sbjct: 131 VATGHY--ARLWRPGQAGLIPVGVPPTVGEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 188

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
               FPLGD+  K + R  A  +G+ +A K DS DICF+  G     + R   G AL G 
Sbjct: 189 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GP 246

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300
           IV  +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V
Sbjct: 247 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 306

Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDG--- 347
             I     +NWL D      G   +  +D     ++ R+   PV    V ++   DG   
Sbjct: 307 TEIQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPRAVHLESGTDGTKL 366

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V +       GVA GQ+ V Y   S   RV+    I+ +
Sbjct: 367 QVALPPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 406


>gi|291276778|ref|YP_003516550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter mustelae 12198]
 gi|290963972|emb|CBG39811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter mustelae 12198]
          Length = 342

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 186/372 (50%), Gaps = 40/372 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V + MSGGVDSS  A LLK+ GY+V G  L+L++  +  +     C         +V 
Sbjct: 1   MKVALLMSGGVDSSYSAYLLKKQGYEVKGFYLKLHDKEEKHQVFLKNC--------HKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V + +E FR  V   F ++Y  GETP PC  CN  +KF   L +  Q G + 
Sbjct: 53  QNLQIDFQVIEAKEEFRQKVYNEFVNAYQRGETPNPCALCNPLMKFGLALDIALQQGCER 112

Query: 141 LATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +ATGHY R    +G  DG  R  +    D  +DQSYFL+A +Q  +  L FPLGDM KE 
Sbjct: 113 IATGHYAR----IGHVDGVTR--IREAKDKTKDQSYFLYAISQDAINRLIFPLGDMLKEE 166

Query: 200 VRDLA----REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           V+  A      +G ++    +SQ+ICFV+   Y D++K+ +  +  EG +  + G  +G 
Sbjct: 167 VKPQAFAAMPWLG-NLETYKESQEICFVET-DYIDILKK-HVNVEQEGIVRDVEGNAIGT 223

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G + YTIG+R+G  V    +P FV+ +    + ++VG +E L    I  +        
Sbjct: 224 HKGYMQYTIGKRKGFSVRGAHDPHFVLKIHPEKNEIVVGKKEELATSLIEAQ-------- 275

Query: 315 LFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               ++   FK     VKIR    P    +   D  +  +F +   G A GQA V Y  D
Sbjct: 276 --NKSLPQNFKAGKYLVKIRYRSAPSEAALDLQDGRIIANFTEPVYGSAKGQALVVYVED 333

Query: 372 SNEARVLGGGII 383
               +VLGGG+I
Sbjct: 334 ----KVLGGGVI 341


>gi|306821577|ref|ZP_07455175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550322|gb|EFM38315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 371

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A +LK  GYDV G+ ++ ++     K    C A QD  D R+V D
Sbjct: 7   KVILGMSGGVDSSVAAVILKEQGYDVTGIFMKNWDD----KNDDMCTAKQDYDDVRKVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ + +Y  ++E+++ + V   F   Y  G TP P V CN+ +KF   L    +L AD +
Sbjct: 63  SLGIDYYTVNFEKQYWDEVFTYFLDEYKKGRTPNPDVMCNQEIKFKAFLDYALKLDADCI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY R       DGK    + R +D  +DQ+YFL    Q+ L    FP+G+++K  VR
Sbjct: 123 AMGHYARVE---EKDGK--FYLKRAVDNNKDQTYFLSRIGQKALSKTIFPIGEIEKSKVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
           ++A+E  L  A K DS  ICF+ +  +   + +    ++ +GD++++ + + +G HNG+I
Sbjct: 178 EIAKEHNLSTALKKDSTGICFIGERNFDTFLDKY--LLSKKGDMINVDDSKKIGSHNGLI 235

Query: 261 NYTIGQRRGLGVAMGE---PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316
           +YT+GQR+GLG+       P FV   D   + + V   E  +     L   + +G+  F 
Sbjct: 236 HYTLGQRKGLGIGGVGSGLPWFVAGKDIEKNILYVAQGEEHDS----LYSTSLIGEQPFW 291

Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E+     +KC  K R  Q  + V V ++ + + V F+     V  GQ  VFY  D   
Sbjct: 292 IMEEEPNFPYKCTAKFRYRQKDIAVTVHKDGENIRVVFDDKVKAVTPGQIAVFYDGDY-- 349

Query: 375 ARVLGGGIIS 384
              +G  II 
Sbjct: 350 --CMGSAIIK 357


>gi|186477293|ref|YP_001858763.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phymatum STM815]
 gi|205811492|sp|B2JGI9|MNMA_BURP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|184193752|gb|ACC71717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia phymatum STM815]
          Length = 384

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 182/385 (47%), Gaps = 32/385 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     DG+   +  R  D  +DQSYFL    Q QL    FPLGD+ K  VR
Sbjct: 122 ATGHYARVREI---DGRFELLKAR--DHTKDQSYFLHRLNQAQLSKTLFPLGDIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D  S+ + V        L    +     +W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIESNTLYVAQGHDHPWLLSRTLTAGNTSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVF----VQRNDDGVY-VDFEKSEVGVASGQACVF 367
                A   G  C  K R  Q D    F       + + ++ + F  ++  V  GQ+ V 
Sbjct: 295 ----HAPEVGHACAAKTRYRQADAACTFGAAGANADPNALFSLHFADAQWAVTPGQSAVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  D      LGGGII  +  +  V
Sbjct: 351 YDGDV----CLGGGIIEHAATAQPV 371


>gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282802|gb|EDT48226.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 406

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 194/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 41  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 97

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 98  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 157

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL  + FPLG +KK  VR
Sbjct: 158 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLEKVMFPLGHLKKPEVR 213

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++ 
Sbjct: 214 KIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 271

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 272 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSIHFTRD 331

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++      K R  Q    V V    D   V F++ +  +  GQA VFY  +  
Sbjct: 332 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVIFDEPQRAITPGQAVVFYDGE-- 385

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 386 --ECLGGGII 393


>gi|262278275|ref|ZP_06056060.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258626|gb|EEY77359.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus
           RUH2202]
          Length = 377

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 196/374 (52%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD +
Sbjct: 61  KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAITLGADFI 120

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  R        G+    + R +D  +DQ+YFL A   +++    FP+G+++K  V
Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G++
Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238

Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
            YT          GL  A     FV++ D  ++R+++G       ++  +++   I+W+ 
Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
               ++   +G +C  K R  Q      VF   N + GV V+F++ +  V  GQ+ VFY+
Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFNDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356

Query: 370 SDSNEARVLGGGII 383
            +      LGGG+I
Sbjct: 357 DEV----CLGGGVI 366


>gi|289679182|ref|ZP_06500072.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae FF5]
          Length = 246

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 147/252 (58%), Gaps = 10/252 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ 
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232

Query: 262 YTIGQRRGLGVA 273
           +TIGQR+GLG+ 
Sbjct: 233 HTIGQRQGLGIG 244


>gi|94676746|ref|YP_588863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166991122|sp|Q1LT51|MNMA_BAUCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94219896|gb|ABF14055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 368

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 201/380 (52%), Gaps = 34/380 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  + +V+V MSGGVDSSV A LL + GY V G+ ++ +   +    +  C   +D+ DA
Sbjct: 2   NIINKKVIVGMSGGVDSSVSALLLLQQGYTVEGLFMKNW---EEDDHEQYCTVAKDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQ 135
           + VC+ + +  +  ++   + + V   F + Y  G TP P + CN+ +KF   L   T+ 
Sbjct: 59  QAVCNQLGIILHKVNFAAEYWDNVFEYFLAEYQVGRTPNPDILCNKNIKFKVFLDFATQN 118

Query: 136 LGADVLATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LGAD +ATGHY IR  +    +GK R  + R +D ++DQSYFL+    QQ+    FPLG 
Sbjct: 119 LGADYIATGHYVIRKDI----NGKSR--LLRGLDNQKDQSYFLYTIGYQQMARCFFPLGK 172

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR++A + GL  A K DS  ICF+ + K  D++ R  +  A  G I+ ++ + +G
Sbjct: 173 LNKLRVREIAAKQGLVTASKKDSTGICFIGKRKLSDLLSRYIS--AKPGAIITVDNEYIG 230

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIY 304
            H G++ YT+GQR+ LG+        +P +VV  D N + +I+      PR  L  + + 
Sbjct: 231 YHQGLMYYTLGQRKKLGIGGTKNGSQDPWYVVDKDINHNLLIIAQGHNHPR--LMSNGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
             ++ W+        +    +C VK R  Q  +   ++   ++ + VDF+     V  GQ
Sbjct: 289 ASKLYWVD----RTTLSTPLRCTVKTRYRQSDIGCLIKPIANNQLQVDFDYPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGII 383
           + VFY ++    + +GGG I
Sbjct: 345 SAVFYLAE----QCIGGGTI 360


>gi|326771916|ref|ZP_08231201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces viscosus C505]
 gi|326638049|gb|EGE38950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces viscosus C505]
          Length = 395

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 194/399 (48%), Gaps = 32/399 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G++V+GV + L  +R A  R GS  CC+ +D  DAR 
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNR-AQTRSGSRGCCSIEDSADARW 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +  YV+D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG 
Sbjct: 60  AAQILGIPFYVWDLSEEFEERVVSDFLDEYRAGRTPNPCVRCNERVKFDALLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           D +ATGHY  +RL  G    R        + R +D  +DQSY L  + ++ L    FPLG
Sbjct: 120 DAVATGHY--ARLSGGASSGRPGDPEGLTLRRAVDAAKDQSYVLAVSGREGLARTLFPLG 177

Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           D   K  VR  A   GL +A K DS DICFV  G     + R     A EG +V  +G++
Sbjct: 178 DAPSKAQVRAEAEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--AHEGAMVSPDGEV 235

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI----- 303
           LG H G   +T+GQR+GLG++     G P +V+     ++ V+VGP E L    +     
Sbjct: 236 LGTHQGYFGFTVGQRKGLGLSQPAEDGRPRYVIETRPATNEVVVGPEELLSRTAVDSDGL 295

Query: 304 -------YLREINWLGDGLFEDAVVDGFK-CFVKIRSSQDPVP--VFVQRNDDGVYVDFE 353
                   L      G    +D+   G++   V++R+   PVP  V V      ++ +  
Sbjct: 296 VLLAAPEPLTTGPDTGTTDSDDSPAVGWQEASVQVRAHGRPVPARVRVDAAQGLLHAELA 355

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
               GVA+GQ+ V Y  D  +  +    + S    S  V
Sbjct: 356 TPLRGVAAGQSLVVYGGDDGDQVLAQATVTSAPASSHPV 394


>gi|298346268|ref|YP_003718955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236329|gb|ADI67461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 43063]
          Length = 409

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 195/400 (48%), Gaps = 39/400 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL + SR  S+   S      + DA RV 
Sbjct: 8   KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  F  +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 68  DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127

Query: 141 LATGHYIRSRLY---------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +ATGHY  +RL+               V +       + R   + +DQSY L     + L
Sbjct: 128 VATGHY--ARLWRPGQVGLIPVGVPPTVAEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 185

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
               FPLGD+  K + R  A  +G+ +A K DS DICF+  G     + R   G AL G 
Sbjct: 186 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GQ 243

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300
           IV  +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V
Sbjct: 244 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 303

Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVYV 350
             I     +NWL D      G   +  +D     ++ R+   PV    V ++ + DG  +
Sbjct: 304 TEIQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPQAVHLESSTDGTKL 363

Query: 351 DFEKSE----VGVASGQACVFYTSDSNEARVLGGGIISGS 386
               S      GVA GQ+ V Y   S   RV+    I+ +
Sbjct: 364 QVALSPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 403


>gi|209560263|ref|YP_002286735.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes NZ131]
 gi|229487429|sp|B5XJA6|MNMA_STRPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209541464|gb|ACI62040.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus pyogenes NZ131]
          Length = 373

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 194/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D   +  M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGKVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 393

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 28  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 84

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 85  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 144

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 145 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 200

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H G++ 
Sbjct: 201 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 258

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     +SL    +    I++  D
Sbjct: 259 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSIHFTRD 318

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++      K R  Q    V V    D   V F++ +  +  GQA VFY  +  
Sbjct: 319 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFYDGE-- 372

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 373 --ECLGGGII 380


>gi|195979019|ref|YP_002124263.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229487422|sp|B4U0P1|MNMA_STREM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|195975724|gb|ACG63250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 374

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 191/372 (51%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 9   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y +G TP P V CN+ +KF   L     LGAD +
Sbjct: 66  QIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    +  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 126 ATGHYAQ----IKRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLGHLQKSEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ +  +   +       A +G ++ ++G+ +G H G++ 
Sbjct: 182 AIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDMGEHAGLMY 239

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I     
Sbjct: 240 YTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVIQ---- 295

Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             F   V + F  +C  K R  Q    V V    D   V F + +  +  GQA VFY  D
Sbjct: 296 --FTREVPEEFTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAVVFY--D 351

Query: 372 SNEARVLGGGII 383
            +E   LGGGII
Sbjct: 352 GHEC--LGGGII 361


>gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 373

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 193/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H G++ 
Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     +SL    +    I++  D
Sbjct: 239 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++      K R  Q    V V    D   V F++ +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 353 --ECLGGGII 360


>gi|329116668|ref|ZP_08245385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parauberis NCFD 2020]
 gi|326907073|gb|EGE53987.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parauberis NCFD 2020]
          Length = 372

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 196/372 (52%), Gaps = 25/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 5   NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDELGVCTATEDYKDVAAV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 62  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYKAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    +  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 122 YVATGHYAQ----IERDQYGTVHMLRGVDNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A + GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G+
Sbjct: 178 VRAIAEKAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMLTVDGRDMGEHAGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I++ 
Sbjct: 236 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASTIHFT 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            + + E+  ++   C  K R  Q    V V    D   V F++ +  +  GQA VFY  D
Sbjct: 296 KE-MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFDEEQRAITPGQAVVFY--D 349

Query: 372 SNEARVLGGGII 383
             E   LGGGII
Sbjct: 350 GQEC--LGGGII 359


>gi|146311302|ref|YP_001176376.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. 638]
 gi|205816867|sp|A4W9E5|MNMA_ENT38 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145318178|gb|ABP60325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter sp. 638]
          Length = 369

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 203/381 (53%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSASPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  DGK +  + R +D  +DQSYFL+     Q+    FP+
Sbjct: 116 AEDLGADFIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLGHDQIVQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A  + L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  
Sbjct: 171 GELEKPEVRKIAENLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDD 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305
           +G H G++ +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L 
Sbjct: 229 VGEHQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288

Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
            ++++W+    F   +    +C VK R  Q  +P  V   D+  V V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTVTALDEERVEVRFDEPVSAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEI----CLGGGIIE 361


>gi|304387037|ref|ZP_07369292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338909|gb|EFM05008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 367

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 190/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQSTDKP 362


>gi|237719106|ref|ZP_04549587.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451485|gb|EEO57276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 361

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 191/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y + ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYREFLREQCPELDSEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +    
Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + + F +    +A
Sbjct: 276 ---------QDKMVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----KRVLGGAFIASQR 349


>gi|194097878|ref|YP_002000923.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998356|ref|ZP_04718280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|240016919|ref|ZP_04723459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA6140]
 gi|240079741|ref|ZP_04724284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|240116431|ref|ZP_04730493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|240122374|ref|ZP_04735330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|240125108|ref|ZP_04737994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|254494442|ref|ZP_05107613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 1291]
 gi|260441652|ref|ZP_05795468.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae DGI2]
 gi|268594219|ref|ZP_06128386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|268595888|ref|ZP_06130055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|268602098|ref|ZP_06136265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|268680964|ref|ZP_06147826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|268683706|ref|ZP_06150568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|291045029|ref|ZP_06570737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae DGI2]
 gi|193933168|gb|ACF28992.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae NCCP11945]
 gi|226513482|gb|EEH62827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 1291]
 gi|268547608|gb|EEZ43026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|268549676|gb|EEZ44695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|268586229|gb|EEZ50905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|268621248|gb|EEZ53648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|268623990|gb|EEZ56390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|291011032|gb|EFE03029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae DGI2]
 gi|317163647|gb|ADV07188.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 383

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 24/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377


>gi|24638305|sp|Q8NZ00|MNMA_STRP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + + E+     F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 298 E-MPEEFT---FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|110834136|ref|YP_692995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
 gi|123149502|sp|Q0VQ25|MNMA_ALCBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110647247|emb|CAL16723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
          Length = 364

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 28/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RV+V MSGGVDSSV AA L   GY V G+ ++ +N    +     C A +D+
Sbjct: 1   MTKAPQDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTDY---CTAREDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA +V   + +  +  ++ E++ + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 58  LDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V   GK +  + R +D  +DQ+YFL A   Q+     FPLG
Sbjct: 118 ITLGADYIATGHYSQ----VSHTGKAK--LLRAVDTNKDQTYFLHAVDYQKFDRTLFPLG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR +A + G D   K DS  ICF+ + ++ D +++     A  G I   +G ++
Sbjct: 172 DLEKPEVRRIAEQKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGSIEDDHGNVI 229

Query: 254 GRHNGIINYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIY-L 305
           G+H+G++ YT+GQR+GLG+     A   P +V    L++N    + G    L   R+   
Sbjct: 230 GQHDGLMYYTLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNS 289

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             + W+      +A     +   K R  Q      V    +G V V F++ +  V  GQ+
Sbjct: 290 APMQWVA----LEAPALPARLTAKTRYRQPDQGCTVSDAGEGRVTVTFDEPQRAVTPGQS 345

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY    +    LGG +I
Sbjct: 346 VVFY----DGPVCLGGAVI 360


>gi|92114562|ref|YP_574490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
 gi|122419524|sp|Q1QUR7|MNMA_CHRSD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91797652|gb|ABE59791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
          Length = 384

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 188/372 (50%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A  L   GY V G+ ++ ++    ++    C A +D+ DA+ VCD
Sbjct: 17  KVIVGMSGGVDSSVTALTLLEQGYAVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ ++ +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGA+ +
Sbjct: 74  TLGITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGAEKI 133

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       DG  R  + + +D  +DQSYFL A  +  +    FP+G+M+K  VR
Sbjct: 134 ATGHYVRQGW---RDGHCR--LLKGLDANKDQSYFLHAVPEVAIARTLFPVGEMEKSEVR 188

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ + ++ D +K+     A  G I    G+++G H G++ 
Sbjct: 189 AIAERHGLTTARKKDSTGICFIGERRFSDFLKQYLP--AQPGVIETPEGEVIGEHMGLMY 246

Query: 262 YTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRES-LEVHRIYLREINWL-G 312
           YT+GQR+GLG+         P +V    L++N    + G     L    +    + W+ G
Sbjct: 247 YTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVAG 306

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                +A +       K R  Q  V   V+   D GV   F++ +  V  GQ+ V Y  D
Sbjct: 307 QPPAPEARLQ-----AKTRYRQQDVACHVRVLEDGGVEARFDEPQRAVTPGQSLVLYDGD 361

Query: 372 SNEARVLGGGII 383
                 LGGG+I
Sbjct: 362 I----CLGGGVI 369


>gi|315920277|ref|ZP_07916517.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694152|gb|EFS30987.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 361

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 190/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAVRMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       + +  GDD K            +DQSYFL+   Q+ L    FP
Sbjct: 110 AWIATGHYSRLEEKNGYTYIVAGDDDK------------KDQSYFLWRLGQEVLKRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + L    +    
Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAE- 275

Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A
Sbjct: 276 ---------QDKIVDEQELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|313668065|ref|YP_004048349.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Neisseria lactamica ST-640]
 gi|313005527|emb|CBN86963.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Neisseria lactamica 020-06]
          Length = 383

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 190/382 (49%), Gaps = 26/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 17  MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGE 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDGDI----CLGGGIIQTTDK 377


>gi|291166309|gb|EFE28355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Filifactor alocis ATCC 35896]
          Length = 371

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 196/389 (50%), Gaps = 32/389 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK+ GY+V+G+ ++ ++ +      G C A QD  D  RV  
Sbjct: 4   KVILGMSGGVDSSVSALLLKQQGYEVVGLFMKNWDEKDEG---GVCTATQDYEDVMRVAG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  Y  ++E+ + + V   F + Y  G TP P V CN+ +KF+  L    +L AD +
Sbjct: 61  QLEIPFYTVNFEKEYWDRVFSYFLNEYEHGRTPNPDVMCNQEIKFNAFLDYALKLEADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY       G     R  + R  D  +DQSYFL   T++ L    FP+ D++K  VR
Sbjct: 121 AMGHYAGVLKKNG-----RYYLRRGKDANKDQSYFLSRITEEALSKTIFPIADLEKSEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQ---GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +LA +  L  A K DS  +CF+ +    K+ D   + N G+     I+ ++G+ +G H G
Sbjct: 176 ELAEKYRLYTATKKDSTGVCFIGERNFDKFLDQFLKTNPGL-----ILTVDGKKIGEHTG 230

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVY--LDKNSSRVIVGPRE-SLEVHRIYLREINWLG 312
           +I+YTIGQR+     GV  GEP FV    L KN   V  G +  SL    +   ++ W+ 
Sbjct: 231 LIHYTIGQRKGIGIGGVGSGEPWFVAGKDLKKNILYVAQGEQHPSLYTTELLGEDVVWI- 289

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                +     F+   K R  Q  +PV V +  D+GV V +++    +  GQ  VFY  +
Sbjct: 290 ----TEKPQFPFRGTAKFRYRQKDIPVTVYEHQDEGVRVVYDEPVRSITPGQFAVFYDGE 345

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400
                 LG  II+  K  +   E L  V+
Sbjct: 346 I----CLGSAIITKGKPLNMKYEYLHDVV 370


>gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus bovis ATCC 700338]
 gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus bovis ATCC 700338]
          Length = 373

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 196/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 125 ATGHY--AQVSRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H G++ 
Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I++  D
Sbjct: 239 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++      K R  Q    V +    D   V F + +  +  GQA VFY  D  
Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTIHVKGDKAEVVFAEPQRAITPGQAVVFY--DGK 352

Query: 374 EARVLGGGII 383
           E   LGGGII
Sbjct: 353 EC--LGGGII 360


>gi|51246807|ref|YP_066691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotalea psychrophila LSv54]
 gi|81641104|sp|Q6AIZ6|MNMA_DESPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50877844|emb|CAG37684.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotalea psychrophila LSv54]
          Length = 344

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 188/360 (52%), Gaps = 25/360 (6%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +AMSGGVDS+  A L K+ G  V+G  ++L      ++R              ++   ++
Sbjct: 8   IAMSGGVDSTATAILQKQKG-PVLGFFMKLNQPDYETQRD----------RVSQIAQKLD 56

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   + D  E F+  V+  F++SY  G TP PC+ CN+ +KF        + G + +ATG
Sbjct: 57  IKLEIIDLTEEFQEYVLKYFSASYFKGLTPNPCIICNKEIKFGLFQQAILRQGVERIATG 116

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY  ++++    G +   + + +D  +DQSYFL   +Q+QL    FPLG M K ++ DL 
Sbjct: 117 HY--AQIHKTAAGYQ---LHKGVDPHKDQSYFLSRLSQEQLAHSIFPLGGMHKGAIYDLV 171

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              G      ++SQD+CF++Q    D +++     A  G+IV  +G+ILG+H G+  YT+
Sbjct: 172 EAHGFHDFRGTESQDVCFLEQDNVVDFLEQTAEFSASSGNIVMNDGKILGKHKGLHRYTV 231

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQRRGLG++   PL+V+ LD  ++ VIVG  E L    + + +I+W+     ED +    
Sbjct: 232 GQRRGLGISYPVPLYVINLDVKNNNVIVGENEQLFHKTMAISDIHWISQPEREDLL---- 287

Query: 325 KCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              V IRS+        + + ++   V F++ +  +  GQ    Y     + +VLG G+I
Sbjct: 288 HASVHIRSTHKGAQASVILKENNRASVIFDEPQRAITPGQFATIY----KDTQVLGSGVI 343


>gi|157150902|ref|YP_001449344.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189040513|sp|A8AU84|MNMA_STRGC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157075696|gb|ABV10379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 373

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 195/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 SIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGKV 369


>gi|139474609|ref|YP_001129325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes str. Manfredo]
 gi|68053070|sp|Q5X9C1|MNMA_STRP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235086|sp|A2RH05|MNMA_STRPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829106|sp|Q1J455|MNMA_STRPF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134272856|emb|CAM31137.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes str. Manfredo]
          Length = 373

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|310657467|ref|YP_003935188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sticklandii DSM 519]
 gi|308824245|emb|CBH20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sticklandii]
          Length = 372

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A +LK  GYDV+G+ ++ ++ +      G C A +D  D RRV D
Sbjct: 4   RVVLGMSGGVDSSVSAVILKEAGYDVVGIFMKNWDEKDED---GVCTATEDYEDVRRVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF+  L    +L AD +
Sbjct: 61  QLGIPYYTVNFEKEYWDRVFSYFLDEYNKGRTPNPDVMCNQEIKFNAFLDYALKLDADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY R       DGK    + R +D  +DQ+YFL    Q+ L    FP+G+++K  VR
Sbjct: 121 AMGHYARVE---ERDGK--FYLLRGVDNNKDQTYFLSRIGQKALSKSLFPIGELEKSKVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260
           ++A +  L  A K DS  +CF+ +  +   + +    ++ +GD+++++ G+ + +H+G+ 
Sbjct: 176 EIAEKNELYTAKKKDSTGVCFIGERDFDAFLDKY--LLSKKGDMINVDTGKKISQHHGLY 233

Query: 261 NYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG--- 314
           +YT+GQR+     GV  GEP FVV  D   + + V   E  E     L   + +G+    
Sbjct: 234 HYTLGQRKGIGIGGVGSGEPWFVVGKDLKKNLLYVAQGEQHEA----LYSTSLIGEAPAW 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ++  V    C  K R  Q  +PV V + +DG +++ ++     V  GQ  V Y +D  
Sbjct: 290 TLDEEPVFPLHCTAKFRYRQQDIPVTVHKMEDGNIHIVYDNPVKAVTPGQVAVLYDADI- 348

Query: 374 EARVLGGGII 383
               LG  II
Sbjct: 349 ---CLGSSII 355


>gi|240127089|ref|ZP_04739750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268685447|ref|ZP_06152309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268625731|gb|EEZ58131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-93-1035]
          Length = 383

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 24/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLFKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377


>gi|242309155|ref|ZP_04808310.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239524196|gb|EEQ64062.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 349

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 192/370 (51%), Gaps = 34/370 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSS  A LL++ GY V G+ L+L+N  +  +            + ++  +
Sbjct: 3   KVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHNKDEKHQYYTQ--------NIQKCSE 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + + D  E F+ +V   F  SY  G TP PC  CN  VKF     + ++L  D +
Sbjct: 55  YLKIPYQIVDERELFKKSVYDYFVESYKQGLTPNPCAMCNPNVKFHIAFKLAKELNCDFV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + +     +G+    + + +D  +DQSYFLF   Q+ +  + FPLGD KKE ++
Sbjct: 115 ATGHYAQIQ-----NGR----IAQAVDTHKDQSYFLFGLKQEWIDRIIFPLGDKKKEEIK 165

Query: 202 DLA-REMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +A +E+     +    DSQ+ICFV+   Y D++++        GD++   G  +G H G
Sbjct: 166 PIALKELPWLGTLETYKDSQEICFVENS-YIDILQKY-YNTDKTGDVLDSKGNKIGTHKG 223

Query: 259 IINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            + YTIG+R+G  +     P +V+ ++   + +IVG +E L   ++    ++ L    FE
Sbjct: 224 YMQYTIGKRKGFTIKGALTPHYVLKINPKDNTIIVGDKEELATTQVQALNLS-LPQEWFE 282

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV----QRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           D       C VKIR     +P  +    + N + +    +++  GVA+GQA V Y  +  
Sbjct: 283 DK--RQIDCEVKIRYKSHKIPAKISLENKNNQNIITAHLKEAAYGVANGQALVLYEGN-- 338

Query: 374 EARVLGGGII 383
             +VLGGG I
Sbjct: 339 --QVLGGGFI 346


>gi|227488018|ref|ZP_03918334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542661|ref|ZP_03972710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092028|gb|EEI27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181859|gb|EEI62831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 299

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 160/313 (51%), Gaps = 21/313 (6%)

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL     LG 
Sbjct: 1   MCDKLGIPFYVWDFSDRFKEDVIDDFVESYAMGETPNPCLRCNEKIKFRALLERGIALGF 60

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      + ++G  R    R +D ++DQSY L   T  +L    FP+G+ +K 
Sbjct: 61  DAVATGHYAT----IDENGYLR----RSVDPKKDQSYVLGVLTADELAHCYFPVGNTEKP 112

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257
            +R+ A   G  +A K DS DICF+  G   +    +   I +  G IV  +G  L  H+
Sbjct: 113 QIREEAARHGFSVAKKPDSYDICFIPDG---NTKAFLGKHIGMRPGVIVDEDGNKLQDHD 169

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  YTIGQR+GL +    A G P +V  +D  +  V VGPRE L VH I    +  L  
Sbjct: 170 GVYGYTIGQRKGLNIRVPAADGRPRYVTDIDAATGTVTVGPREHLAVHTIIADRLKQLHP 229

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               D      +C V++R+  + VP       D + +  ++   GVA GQA V Y  D  
Sbjct: 230 AFNGDV-----ECQVQVRAHGEVVPCSAHIEGDTMTLTLKQPLSGVARGQAAVVYLPDQA 284

Query: 374 EARVLGGGIISGS 386
              VLG G I G+
Sbjct: 285 GDIVLGSGTICGT 297


>gi|296135318|ref|YP_003642560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas intermedia K12]
 gi|295795440|gb|ADG30230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas intermedia K12]
          Length = 368

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 184/378 (48%), Gaps = 28/378 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK+ GY V+G+ ++ +     S+    C   QD  DA  V D 
Sbjct: 9   VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSEY---CSTRQDWLDAASVADR 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++   ++  V   F   YAAG TP P V CN  +KF   L    +LGAD +A
Sbjct: 66  IGIDIEAVNFAAEYKERVFADFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R    D G     + R +D  +DQSYFL    Q QL    FP+G++ K  VR 
Sbjct: 126 TGHYARVRET--DHGFE---LLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GL  A K DS  ICF+ +  + D + R        G +    G+ +G+H G+  Y
Sbjct: 181 VAEAIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGQHLGLAFY 238

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL-GD 313
           T+GQR+G+G+     + GEP FV   D   +++IV        L  H +     +W+ G 
Sbjct: 239 TLGQRKGIGLGGSKSSNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWVSGT 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              E A   G     K R  Q D    F  +  +   + F+  +  V  GQ+ V Y  + 
Sbjct: 299 APAEGACGYG----AKTRYRQVDAACRFQYQGPERFTLKFDAPQWAVTPGQSAVLYDGEV 354

Query: 373 NEARVLGGGIISGSKRSD 390
                LGGGII  + R+D
Sbjct: 355 ----CLGGGIIEAASRND 368


>gi|42560982|ref|NP_975433.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400641|sp|Q6MTG1|MNMA_MYCMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42492479|emb|CAE77075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320545|gb|ADK69188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 375

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V+V +SGGVDSSV   LL   GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   KVIVGLSGGVDSSVACYLLLEQGYEVEGLFMRNWDSATNNDILGNRNINDDICPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA+ V D +N+  Y  D+ + + + V   F   Y    TP P + CN+ +KF   L+   
Sbjct: 64  DAKAVADKLNIKLYRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            QL AD +A GHY +      +    +  + +  D  +DQ+YFL    Q+QL    FPL 
Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTNQYELIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ KE VR +A +  L  A+K DS  ICF+ +  + + ++  N      GDIV +   ++
Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQ--NYIPNQTGDIVDIKTNKV 238

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306
           LG+H G++ YTIGQR+G+ ++ M EP +V   DK+  + I+       +  L      + 
Sbjct: 239 LGQHIGVMYYTIGQRKGINLSGMSEPYYVA--DKDVKKNILYVCSTSDQSYLHSTSCLVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           +INW+ D       ++ F+C  K R  Q    V V++ DD  Y V F+K    +  GQ  
Sbjct: 297 DINWILDISKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY +D      LGG +I
Sbjct: 357 VFYLNDI----CLGGAVI 370


>gi|330428736|gb|AEC20070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pusillimonas sp. T7-7]
          Length = 379

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 183/375 (48%), Gaps = 27/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  DA  V D
Sbjct: 18  RVVIGMSGGVDSSVAAWLLKEQGYDVLGLFMKNWEDDDDSEY---CSTRQDWLDAASVAD 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGAD +
Sbjct: 75  LIGVDIEAVNFATEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGADYI 134

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +G + +++ + +DL +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 135 ATGHYARVRSIQTPNGTQHQLL-KALDLSKDQSYFLHRLNQAQLARTLFPLGEIPKTEVR 193

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA+E+ L  A K DS  ICF+ +  + + + R     A  G I    G ++G H G+  
Sbjct: 194 RLAQELQLPNAAKKDSTGICFIGERPFREFLNRYLPTHA--GPIKTPEGVVVGEHQGLSF 251

Query: 262 YTIGQRRGLGV----------AMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREI 308
           YT+GQR+GLG+             +  +     LD N+  V+ G     L    +  ++ 
Sbjct: 252 YTLGQRKGLGIGGVKGRQRDDGTADAWYTARKDLDSNTLYVVQGHDHPWLLASSLNAQDA 311

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           +W+     E      +    + R + D V      + +   + F++ +  V  GQ+ V Y
Sbjct: 312 SWVAGYAPEPG---SYAAKSRYRQA-DAVCALAGVSGNRFSLAFQEEQWAVTPGQSAVLY 367

Query: 369 TSDSNEARVLGGGII 383
             D      LGGGII
Sbjct: 368 DKDV----CLGGGII 378


>gi|205829103|sp|Q1J988|MNMA_STRPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829104|sp|Q1JJD5|MNMA_STRPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK150]
          Length = 373

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D +    M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQEGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V+ ++ +  V  GQA VFY  D  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVAVKGDKAVVNVDQPQRAVTPGQAVVFYDGD-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + ++  V
Sbjct: 353 --ECLGGGLIDRAYKNGQV 369


>gi|225869459|ref|YP_002745407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
 gi|259495839|sp|C0MGQ2|MNMA_STRS7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225702735|emb|CAX00880.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 374

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 190/372 (51%), Gaps = 29/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 9   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y +G TP P V CN+ +KF   L     LGAD +
Sbjct: 66  QIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    +  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 126 ATGHYAQ----IKRDENGVVHMLRGFDKGKDQTYFLSQLSQKQLQKTMFPLGHLQKSEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  A K DS  ICF+ +  +   +       A +G ++ ++G+ +G H G++ 
Sbjct: 182 AIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDMGEHAGLMY 239

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I     
Sbjct: 240 YTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVIQ---- 295

Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             F   V + F  +C  K R  Q    V V    D   V F + +  +  GQA VFY  D
Sbjct: 296 --FTREVPEEFTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAVVFY--D 351

Query: 372 SNEARVLGGGII 383
            +E   LGGGII
Sbjct: 352 GHEC--LGGGII 361


>gi|163789149|ref|ZP_02183592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriales bacterium ALC-1]
 gi|159875562|gb|EDP69623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriales bacterium ALC-1]
          Length = 395

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 199/405 (49%), Gaps = 54/405 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V D
Sbjct: 3   RVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISD-ECPWLEDSNDAMLVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D   +++  ++    + Y  G TP P V CNR +KF   + +  +LGAD +
Sbjct: 62  KLGIPFQTVDLSVQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMDIALELGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +  +  DGK    +    D  +DQSYFL   +Q QL    FP+G++ K  VR
Sbjct: 122 ATGHYCR-KSTIEKDGKVIHQLLSGADNNKDQSYFLCQLSQAQLAKALFPIGELTKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGDIVH----------- 247
           ++A+  GL  A+K DSQ +CF+ + +  + ++   +   G+ +E D              
Sbjct: 181 EIAKAQGLITAEKKDSQGLCFIGKVRLPEFLQQQLKPKEGVIVEVDSAFEIFSQSIPDFK 240

Query: 248 -----------------LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
                             +G+++G+H G   +T GQR+GLGV    EPLFV+  D   + 
Sbjct: 241 SKENELEFFSKKPEYAITDGKVVGKHQGAHYFTKGQRKGLGVGGTIEPLFVIDTDVKENI 300

Query: 290 VIVGPRESLEVHRIYLR--------EINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPV 339
           +  G  ++   H   LR        E++W+ + L   A+ +G   +   +IR  Q     
Sbjct: 301 IFTGQGKN---HPGLLRNVLFVKNDELHWVREDL---ALAEGDTMQVMARIRYRQALENA 354

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + +   G+YV+FE  +  +  GQ   +Y +D     +LG G+IS
Sbjct: 355 TLHKVASGLYVEFENQQSAITEGQFVAWYLND----ELLGSGVIS 395


>gi|134294775|ref|YP_001118510.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia vietnamiensis G4]
 gi|205813829|sp|A4JBM2|MNMA_BURVG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134137932|gb|ABO53675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 384

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 178/376 (47%), Gaps = 32/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEMPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKRVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L  H +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSHELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQACVF 367
               +   DGF C  K R  Q            G        + F+ ++  V  GQ+ V 
Sbjct: 295 ----EPPADGFACGAKTRYRQADAACRFGAAAAGPAGEARFTLAFDDAQWAVTPGQSAVL 350

Query: 368 YTSDSNEARVLGGGII 383
           Y  +      LGGGII
Sbjct: 351 YDGEI----CLGGGII 362


>gi|330827143|ref|YP_004390446.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans
           K601]
 gi|329312515|gb|AEB86930.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans
           K601]
          Length = 373

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 35/381 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  V 
Sbjct: 7   QRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ 
Sbjct: 64  DVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    +       + + +D  +DQSYFL    Q+QL    FP+G+++K  V
Sbjct: 124 IATGHYARVRH---NPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E+GL  A K DS  ICF+ +  + + + R    I+ E G I+   G+ LGRH G+
Sbjct: 181 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRY---ISHEPGPILDDRGRRLGRHVGL 237

Query: 260 INYTIGQRRGLGV----------AMGE--PLFVVY--LDKNSSRVIVGP-RESLEVHRIY 304
             YT+GQR+GLG+            GE  P FV    L  N+ RV+ G     L  HR+ 
Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
            ++ +W+              C  K R  Q      V     G + + F +++  V  GQ
Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFPEAQWAVTPGQ 352

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y  +      LGGG+I+
Sbjct: 353 SAVLYDGEV----CLGGGVIA 369


>gi|319764949|ref|YP_004128886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicycliphilus denitrificans BC]
 gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicycliphilus denitrificans BC]
          Length = 373

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 35/381 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  V 
Sbjct: 7   QRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ 
Sbjct: 64  DVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    +       + + +D  +DQSYFL    Q+QL    FP+G+++K  V
Sbjct: 124 IATGHYARVRH---NPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E+GL  A K DS  ICF+ +  + + + R    I+ E G I+   G+ LGRH G+
Sbjct: 181 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRY---ISHEPGPILDDRGRRLGRHVGL 237

Query: 260 INYTIGQRRGLGV----------AMGE--PLFVVY--LDKNSSRVIVGP-RESLEVHRIY 304
             YT+GQR+GLG+            GE  P FV    L  N+ RV+ G     L  HR+ 
Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
            ++ +W+              C  K R  Q      V     G + + F +++  V  GQ
Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFSEAQWAVTPGQ 352

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y  +      LGGG+I+
Sbjct: 353 SAVLYDGEV----CLGGGVIA 369


>gi|88703376|ref|ZP_01101092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Congregibacter litoralis KT71]
 gi|88702090|gb|EAQ99193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Congregibacter litoralis KT71]
          Length = 372

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 184/370 (49%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A +L   GYDV G+ ++ ++    ++    C A  D  DA+ V D
Sbjct: 10  KVIVGMSGGVDSSVAALILLEQGYDVEGLFMKNWDEDDGTE---YCTAKVDYADAQAVAD 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  ++   + + V   F   Y AG TP P + CNR +KF   L    +LGAD +
Sbjct: 67  KLGITLHAANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFRAFLDYALELGADRI 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  +  G     R  +C+ +D  +DQSYFL A    +L    FPLG+++K  VR
Sbjct: 127 ATGHYARRGMRHG-----RPALCKGLDNNKDQSYFLHAVGHAELSKTLFPLGEIEKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA   GL   DK DS  ICF+ + ++ D +++     A  G I  L G  +G H+G++ 
Sbjct: 182 ALAERAGLRTHDKKDSTGICFIGERRFKDFLQQYLP--AQPGIIKTLEGDTIGEHSGLMY 239

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           +TIGQR+GLG+         P +V   D  ++ ++V       +L    ++   + W+  
Sbjct: 240 HTIGQRQGLGIGGLARHNEAPWYVAGKDLANNVLLVVQGNDHPALFSQELWTDTLFWIAG 299

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A      C  K+R  Q      V  +     ++F   +  +  GQ+ V Y  D N
Sbjct: 300 ----QAPQFPLHCAAKVRYRQADQKCTVFEDGGRYRINFSAPQRAITPGQSVVLY--DGN 353

Query: 374 EARVLGGGII 383
               LGGG+I
Sbjct: 354 --ICLGGGVI 361


>gi|15675922|ref|NP_270096.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes M1 GAS]
 gi|71911653|ref|YP_283203.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS5005]
 gi|14195262|sp|P58075|MNMA_STRP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13623161|gb|AAK34817.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus
           pyogenes M1 GAS]
 gi|71854435|gb|AAZ52458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS5005]
          Length = 373

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|50915203|ref|YP_061175.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10394]
 gi|94995352|ref|YP_603450.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10750]
 gi|50904277|gb|AAT87992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10394]
 gi|94548860|gb|ABF38906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10750]
          Length = 379

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 13  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 70  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 358 KEC--LGGGMI 366


>gi|205829100|sp|Q48QM8|MNMA_STRPM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 352 KEC--LGGGMI 360


>gi|19747021|ref|NP_608157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS8232]
 gi|19749279|gb|AAL98656.1| tRNA-methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 379

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 13  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 70  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTLGADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 358 KEC--LGGGMI 366


>gi|254805310|ref|YP_003083531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha14]
 gi|254668852|emb|CBA06922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha14]
 gi|319410773|emb|CBY91158.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis WUE 2594]
 gi|325140698|gb|EGC63213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis CU385]
          Length = 367

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 190/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362


>gi|59801573|ref|YP_208285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA 1090]
 gi|293399659|ref|ZP_06643811.1| tRNA methyl transferase [Neisseria gonorrhoeae F62]
 gi|59718468|gb|AAW89873.1| putative tRNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|291609910|gb|EFF39033.1| tRNA methyl transferase [Neisseria gonorrhoeae F62]
          Length = 383

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 188/382 (49%), Gaps = 24/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R     G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377


>gi|78047602|ref|YP_363777.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123585152|sp|Q3BTY6|MNMA_XANC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78036032|emb|CAJ23723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 378

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 184/374 (49%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+V+ +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVLGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + N V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWNGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  N+   +   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGEE 349

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 350 ----CLGGAVIAAT 359


>gi|94989481|ref|YP_597582.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS9429]
 gi|94993368|ref|YP_601467.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS2096]
 gi|94542989|gb|ABF33038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS9429]
 gi|94546876|gb|ABF36923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS2096]
          Length = 379

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 13  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 70  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 358 KEC--LGGGMI 366


>gi|306826439|ref|ZP_07459751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
 gi|304431369|gb|EFM34366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
          Length = 378

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 12  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 68

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 69  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 129 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 185 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 242

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 243 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 302

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 303 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 356

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 357 KEC--LGGGMI 365


>gi|58582179|ref|YP_201195.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576740|ref|YP_001913669.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576931|ref|YP_001913860.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75435215|sp|Q5GZR1|MNMA_XANOR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829009|sp|B2SMD7|MNMA_XANOP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58426773|gb|AAW75810.1| tRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188521192|gb|ACD59137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521383|gb|ACD59328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 378

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 186/373 (49%), Gaps = 28/373 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC  
Sbjct: 6   IVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCGV 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +A
Sbjct: 62  LGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERIA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +    V   G R R++ R  D ++DQSYFL    Q QL    FP+GD++K ++R 
Sbjct: 122 TGHYAQ----VAHRGGRWRLL-RGADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLRR 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +AR+ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  +
Sbjct: 177 IARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFYF 234

Query: 263 TIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGDG 314
           T+GQR GL +         P +VV  D  S+ + V   R+S  +   +L+  + +W+   
Sbjct: 235 TLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTGA 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                    F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  D  
Sbjct: 295 ----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLY--DGK 348

Query: 374 EARVLGGGIISGS 386
           E   LGG +I+ +
Sbjct: 349 E--CLGGAVIAAT 359


>gi|323142835|ref|ZP_08077547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Succinatimonas hippei YIT 12066]
 gi|322417377|gb|EFY07999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Succinatimonas hippei YIT 12066]
          Length = 374

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 186/369 (50%), Gaps = 21/369 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV+ +SGGVDSS+ AALLK +G  V  + ++ +           C A  D  DA++VCD
Sbjct: 16  HVVIGLSGGVDSSLSAALLKENGMKVTALFMKNWEEDDTDT---VCAAAADREDAQKVCD 72

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +     ++   + + V   F S Y AG TP P + CN+ +KF          L AD 
Sbjct: 73  KLGIELKTINFAAEYWDRVFENFLSEYQAGRTPNPDILCNKEIKFKAFFDYALTDLHADF 132

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +      +D     ++ R +D  +DQ+YFL A     L  + FP+G ++K  V
Sbjct: 133 IATGHYAQRSF---NDPLAAHLL-RSVDKNKDQTYFLHAIGPNVLHKVLFPVGAIEKPQV 188

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DS  ICF+ + ++ + ++      A  G I+ ++GQ +G H+G++
Sbjct: 189 RLMAEERGLVTARKKDSTGICFIGEKRFHEFLQHYLP--AHSGPIITVDGQTVGEHDGLM 246

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             TIGQR+GL +       GEP +VV  D  ++ +I+    +     +Y + +    +  
Sbjct: 247 FATIGQRKGLHIGGSKDGSGEPWYVVDKDIKNNALIIAQGHNHPA--LYSKGLMAQNETW 304

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
             +A    FKC  KIR  Q  V   V R ++ + V F+     VA GQ+ VFY      +
Sbjct: 305 LVEAPQMPFKCTCKIRYRQPDVNCTVYRENNELKVLFDNKVAAVAPGQSVVFYQG----S 360

Query: 376 RVLGGGIIS 384
             LGG II+
Sbjct: 361 ECLGGAIIN 369


>gi|313889493|ref|ZP_07823139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122105|gb|EFR45198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 373

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 194/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALNLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D   R  M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A    L  A K DS  ICF+ +  +   + +     A +G +  ++G+ +G H G++ 
Sbjct: 181 EIAARADLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMKTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +++  D
Sbjct: 239 YTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNVLYVGQGFYHESLMSTSLDASMVHFTHD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  +    +C  K R  Q    V V+ + D   V F + +  +  GQA VFY  D+ 
Sbjct: 299 MPKEFTL----ECTAKFRYRQPDCKVSVKVSGDKAKVLFAEPQRAITPGQAVVFY--DNQ 352

Query: 374 EARVLGGGII 383
           E   LGGGII
Sbjct: 353 EC--LGGGII 360


>gi|71904534|ref|YP_281337.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS6180]
 gi|71803629|gb|AAX72982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS6180]
          Length = 379

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 25/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 13  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 70  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  
Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + + E+     F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D 
Sbjct: 304 E-MPEEFT---FECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357

Query: 373 NEARVLGGGII 383
            E   LGGG+I
Sbjct: 358 KEC--LGGGMI 366


>gi|94311890|ref|YP_585100.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus metallidurans CH34]
 gi|205816893|sp|Q1LJ45|MNMA_RALME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|93355742|gb|ABF09831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cupriavidus metallidurans CH34]
          Length = 359

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 179/371 (48%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V D
Sbjct: 5   RVVVGLSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  VIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGANTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +GK    + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRQAA--NGKFE--LLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G +    G+++G H G+  
Sbjct: 178 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPEGKVVGEHIGLAF 235

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D  S+ + V        L    +   +++W+  
Sbjct: 236 YTLGQRKGIGLGGSRDGSGDAWYVARKDMASNTLYVVQGHDHPWLLTSELNAADLSWVAG 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +    G     K R  Q   P   V    D + + F + +  V  GQ+ V Y  D 
Sbjct: 296 ----EPPAAGATMAAKTRYRQSDAPCRVVAAEGDALKLSFAEPQWAVTPGQSAVLYDGDV 351

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 352 ----CLGGGII 358


>gi|325142740|gb|EGC65116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 961-5945]
 gi|325198666|gb|ADY94122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis G2136]
 gi|325201768|gb|ADY97222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240149]
 gi|325208488|gb|ADZ03940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis NZ-05/33]
          Length = 367

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 188/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +     +    V F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYEGDV----CLGGGIIQSTDKP 362


>gi|295096181|emb|CBK85271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 370

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G  +G+H G++
Sbjct: 180 RKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+        +P +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGHDHPR--LMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ VFY+
Sbjct: 296 VD----REPLKGTLRCTVKTRYRQTDIPCTVTALYDDRIDVRFDEPVSAVTPGQSAVFYS 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEI----CLGGGIIE 362


>gi|315927736|gb|EFV07063.1| Putative tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 269

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 162/288 (56%), Gaps = 22/288 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDS+V A  LK  G++VIG  ++L+      +        +++    +V + + + 
Sbjct: 1   MSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIP 52

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY
Sbjct: 53  YHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHY 112

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR- 205
            R             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A  
Sbjct: 113 ARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFAST 163

Query: 206 -EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
            E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G ++YTI
Sbjct: 164 IEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEGYMHYTI 221

Query: 265 GQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           G+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN L
Sbjct: 222 GKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLL 269


>gi|269468097|gb|EEZ79807.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [uncultured SUP05 cluster bacterium]
          Length = 367

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 184/377 (48%), Gaps = 35/377 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +++V +SGGVDSSV A LL   GYDV  + ++ +    + +    C A QD+ DA++
Sbjct: 8   KNNKIIVGLSGGVDSSVAALLLLEQGYDVEALFMKNWEEDDSEEH---CSAEQDLSDAQK 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D +++  +  ++   + + V   F   +  G TP P V CN+ +KF   L     LGA
Sbjct: 65  VADKLSIKLHTINFSADYWDDVFDHFLKEHKKGRTPNPDVLCNQKIKFKVFLEHAILLGA 124

Query: 139 DVLATGHYIR----SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           D +ATGHY R      +Y    G         +D  +DQSYFL    QQQL +  FPLG+
Sbjct: 125 DKIATGHYARIVEKDNVYSLKTG---------LDNAKDQSYFLHLLNQQQLSNSLFPLGE 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR++A E     ADK DS  ICF+ +  +   ++         GD+V  +G+ + 
Sbjct: 176 IDKSKVREIATEHNFITADKKDSTGICFIGERNFSQFLQTYLP--KQPGDVVDQDGKFIK 233

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLRE 307
            H+G+  YT+GQR+GL +       GEP FV    +D N   V+ G    L  + +    
Sbjct: 234 HHDGLAFYTMGQRKGLEIGGGFGQSGEPWFVADKCIDSNELIVVQGDHPLLYHNTLNASS 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
            +W+      +       C  KIR  Q       VQ  +  + + FE+ +  +  GQ+ V
Sbjct: 294 AHWIN-----NPPKLPLTCTAKIRYRQQSQSCTIVQEENKHLKIVFEQPQRAITPGQSIV 348

Query: 367 FYTSDSNEARVLGGGII 383
           FY +D      LGG II
Sbjct: 349 FYDNDV----CLGGAII 361


>gi|312879199|ref|ZP_07738999.1| tRNA methyl transferase [Aminomonas paucivorans DSM 12260]
 gi|310782490|gb|EFQ22888.1| tRNA methyl transferase [Aminomonas paucivorans DSM 12260]
          Length = 352

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 182/363 (50%), Gaps = 26/363 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++  SGGVDS   A LL+R+GY                   G    G     ARR  + +
Sbjct: 7   LLLASGGVDSCAAAVLLRREGYLP--------TLVTLLLLPGDTPEGPGPGRARRAAERL 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLGADV-L 141
           ++ H + D  E F   V+ PF  +Y  G TP PC DCN  +KF + L +    LGADV +
Sbjct: 59  DLPHRILDLREPFAREVVAPFREAYLRGRTPNPCADCNGRIKFRAALAAAETLLGADVPV 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     R  + R  D +RDQSYFL       L  L FPLGD+ KE  R
Sbjct: 119 ATGHYARILREGG-----RATLARGRDGKRDQSYFLAGLPSSLLSRLLFPLGDLSKEDAR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LARE GL+ A+  DS ++CFV  G Y    K +      EG +V  +G++LG H G+ N
Sbjct: 174 RLAREAGLEAAETPDSMELCFVPGGDY---RKLLGPEAFREGPVVDPSGRVLGTHEGVGN 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T GQR+GLGV+  EPL+V  +D   +RV V  RE+L  H +    +N     L  +A+ 
Sbjct: 231 FTRGQRKGLGVSSPEPLYVREVDGGRNRVTVDRREALLTHLVRGGGVNV----LIPEALR 286

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K F K+RS  +P P  ++  D   + V F + +   A GQ  V Y     + RV+ G
Sbjct: 287 GKTKLFGKVRSQGEPGPCSLESWDGAFLTVRFHQPQFAPAPGQRLVLY---DGQGRVVAG 343

Query: 381 GII 383
             +
Sbjct: 344 STL 346


>gi|326575288|gb|EGE25216.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis CO72]
          Length = 392

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 205/389 (52%), Gaps = 34/389 (8%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KALKDIKVIVGMSGGVDSSVSAVLLQQVGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R       DGK +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 SQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305

Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357
              +++W   G+     +    GF+C  K R   S QD     +    D V V F  ++ 
Sbjct: 306 TAYKLDW---GIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ VFY  D      LGGG+I G+
Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387


>gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 369

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 185/378 (48%), Gaps = 28/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ +SGGVDSSV AALLK  GY+VIG+ ++ +     ++    C   QD  DA  V D
Sbjct: 5   KVVIGLSGGVDSSVSAALLKEQGYEVIGLFMKNWEDDDDAEY---CSTRQDWIDAVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     ++   +++ V   F   Y AG TP P V CN  +KF   L     LGAD++
Sbjct: 62  VLGIDIEAVNFSAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGADLI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    D G  R  + + +D  +DQSYFL    Q QL    FPLG+++K  VR
Sbjct: 122 ATGHYARVRESASDAG--RFELLKAIDHTKDQSYFLHRLNQAQLSKTLFPLGEIRKTEVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++GL  A K DS  ICF+ +  + + + R  +     G +    G  +G H G+  
Sbjct: 180 KMAEQLGLPNAAKKDSTGICFIGERPFREFLNRYLS--YQPGPMKTPEGDTIGEHVGLSF 237

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKN-SSRVIVGPRESLEVHRIYL---REINWLGDGLFE 317
           YT+GQR+G+G+         + + N SS      R+ +  + +Y+    +  WL     E
Sbjct: 238 YTLGQRKGIGIGG----IKAHQNANGSSDAWYVARKDIASNTLYVVQGHDHPWLLSASLE 293

Query: 318 --------DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
                    A  D  +   K R  Q  VP  V   D   + + F+ S+  V  GQ+ V Y
Sbjct: 294 ADQLSWIAGAPPDDGQLSAKTRYRQADVPCHVGMVDAQRLQLAFDASQWAVTPGQSAVLY 353

Query: 369 TSDSNEARVLGGGIISGS 386
             D      LGGGII+ S
Sbjct: 354 RGDV----CLGGGIIASS 367


>gi|71658016|sp|Q5F7G4|MNMA_NEIG1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 24/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L      GAD +A
Sbjct: 67  VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R     G        + + +D  +DQSYFL+     QL    FPLG ++K  VR 
Sbjct: 127 TGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +G H G++ Y
Sbjct: 182 LAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTIGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P  +    +D+   + F++ +  V  GQ+ V Y  D      
Sbjct: 296 RPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAVLYDVDI----C 350

Query: 378 LGGGIISGSKR 388
           LGGGII  + +
Sbjct: 351 LGGGIIQTTDK 361


>gi|237714361|ref|ZP_04544842.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445525|gb|EEO51316.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 353

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 188/382 (49%), Gaps = 59/382 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR + + +
Sbjct: 1   MVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAERM 46

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L    +AT
Sbjct: 47  GIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVAT 106

Query: 144 GHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GHY R       +Y+  GDD K            +DQSYFL+   Q  L    FPLGD  
Sbjct: 107 GHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFPLGDYT 154

Query: 197 KESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+  G  
Sbjct: 155 KVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVK 213

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +         
Sbjct: 214 LGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE------ 267

Query: 313 DGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
               +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A GQ+ 
Sbjct: 268 ----QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSA 323

Query: 366 VFYTSDSNEARVLGGGIISGSK 387
           VFY       RVLGG  I+  +
Sbjct: 324 VFYDG----RRVLGGAFIASQR 341


>gi|327467648|gb|EGF13145.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK330]
          Length = 373

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 194/379 (51%), Gaps = 25/379 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ +   V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H G++ 
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++  +
Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGIISGSKRSDAV 392
               LGGG+I  + R   V
Sbjct: 353 --ECLGGGLIDNAYRDGKV 369


>gi|198274479|ref|ZP_03207011.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135]
 gi|198272681|gb|EDY96950.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135]
          Length = 349

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 187/369 (50%), Gaps = 25/369 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++ MSGG DSSV A LL+  GY+V G+T + Y      ++ G+    + + DAR 
Sbjct: 3   ENNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY------EKDGNI---EYLDDARD 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C T+ + H ++D  E F+  +I  F   Y AG TP+PC  CN  +K+  L  V  + G 
Sbjct: 54  LCRTLGIPHLIYDAREMFQEKIIRYFIQEYMAGRTPVPCTLCNNYLKWPLLQQVADEKGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+  +   G       I C   D ++DQS+FL+   Q  L  +  P+G + K 
Sbjct: 114 YHLATGHYVNKQKIDG----YWYITCGN-DADKDQSFFLWGLPQSILERMCLPMGGLTKT 168

Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            VR++A   G L  A K DS  +CF        +   +  G    G+     GQ +G+H 
Sbjct: 169 RVREIAAARGFLKAAKKRDSLGVCFCPMDYRTFLKTHVPEGEISPGNFYDEQGQKIGKHE 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG-PRESLEVHRIYLREINWLGDGLF 316
           G   YTIGQRRGLG+ + + LFV  +    ++VI+    ++LE + +YL   N +     
Sbjct: 229 GYPFYTIGQRRGLGIHLNKALFVKEIIPQENKVIISDSLQALEKNEMYLTHWNLIN---- 284

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D V+      VKIR  +      V   DD  +++   +    +ASGQA  FY  ++   
Sbjct: 285 PDVVLGHEDVIVKIRYRKQANRCTVTLLDDQRLHIQLHEPLASIASGQAAAFYRDNT--- 341

Query: 376 RVLGGGIIS 384
            VLGGGII 
Sbjct: 342 -VLGGGIIE 349


>gi|261415273|ref|YP_003248956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371729|gb|ACX74474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327007|gb|ADL26208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 355

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 187/364 (51%), Gaps = 16/364 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V MSGGVDSSV A LL++ GY+V+GVTL++     ++    +      V  A+ + +
Sbjct: 5   RVAVGMSGGVDSSVAALLLQQQGYEVVGVTLRVLPDVDSAFDVEN---DPSVVRAKMIAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H+V +  + F   V+    + ++   TP PC  CNR +KF  ++   + LGA+ L
Sbjct: 62  KLGIEHHVANCSDAFTGEVLKRCHADFSHARTPNPCCYCNRFIKFGWMMDYAKSLGAEFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R       +G RR  + R  D  +DQSYFLF    ++   +  PLG   K  VR
Sbjct: 122 ATGHYVRIEEV---NGVRR--LLRGRDPGKDQSYFLFWVPDERRNHVLTPLGTYVKSEVR 176

Query: 202 DLAREMGLDIADKSDSQDICF-VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           ++A + G   A   DSQDICF +   +Y + +K     +   G  V   G++   H+G  
Sbjct: 177 EIAAQNGFVNAKTGDSQDICFDIYGSQYTEFLKDRFGEMTRPGRFVDEKGKVWNTHDGFH 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV-GPRESLEVHRIYLREINWLGDGLFEDA 319
            YT+GQR+GLGVA+G P FV ++D  +  ++V G + S+   R+ +    W G G+ E  
Sbjct: 237 KYTVGQRKGLGVAIGVPAFVKHVDPETGDILVTGDKSSVCFDRVEMVNCEWHG-GVREVG 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +  V+ R       V +   +  V V F++    V  GQ  VFY  D     VLG
Sbjct: 296 TTFRAEGMVRYRQRAVGCEVTIVDTNKAVAV-FDEPLFAVTPGQCAVFYDGDM----VLG 350

Query: 380 GGII 383
           GG I
Sbjct: 351 GGQI 354


>gi|78065260|ref|YP_368029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. 383]
 gi|123569299|sp|Q39JI1|MNMA_BURS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77966005|gb|ABB07385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. 383]
          Length = 383

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 182/383 (47%), Gaps = 40/383 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAYDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+I+G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKIVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       G+P FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKSGNGDPWFVAAKDIASNTLYVVQGHDHPWLLARELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
               +   +GF C  K R  Q           P P    R      + F+ ++  V  GQ
Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACAFGAATPGPAGEAR----FSLAFDDAQWAVTPGQ 346

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           + V Y  +      LGGGII  +
Sbjct: 347 SAVLYDGEI----CLGGGIIESA 365


>gi|309775351|ref|ZP_07670356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916868|gb|EFP62603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 386

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 194/376 (51%), Gaps = 29/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ +SGGVDS+V A LLK  GYDV    ++ ++S   +   G+       C   QD  
Sbjct: 4   KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V D + +     D+ + + + V   F   Y  G TP P + CN+ +KF   ++  R
Sbjct: 64  DAKEVADRLGLPLLRVDFVKEYWDHVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMNYAR 123

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LG DVLATGHY +    V   GK  R M R  D  +DQ+YFL   +Q  L    FP+G 
Sbjct: 124 KLGFDVLATGHYAQ----VDHSGKESR-MLRGADSNKDQTYFLCQVSQDALRHSMFPIGH 178

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252
           M+K  VR++A  M L+ ++ K DS  ICF+ +  + + +K  N   + +GDI+ +   + 
Sbjct: 179 MEKHEVREIAERMELNSVSKKKDSTGICFIGERNFKEFLK--NYLPSQDGDIMDIETLET 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVGPR-ESLEVHRIYLREI 308
           +GRH G++ YTIGQR+GLG+     P FVV  D  KN   V  G   + L      +  +
Sbjct: 237 IGRHGGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLYSDSCIVSGV 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NW  +   +  +V    C  K R  Q    V ++  D+  VYV + +    V +GQ  VF
Sbjct: 297 NWFSENKPQGELV----CTAKFRYRQPDNDVILRFIDNTTVYVRYPQLVSSVTAGQEAVF 352

Query: 368 YTSDSNEARVLGGGII 383
           Y ++      LGGG+I
Sbjct: 353 YQNEE----CLGGGVI 364


>gi|289644236|ref|ZP_06476325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia symbiont of Datisca glomerata]
 gi|289505959|gb|EFD26969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia symbiont of Datisca glomerata]
          Length = 351

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 140/371 (37%), Positives = 188/371 (50%), Gaps = 33/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S   S R G+  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSKSPD-SHRTGARGCCTVEDARDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  +RF + VI  F ++Y AG TP PCV CN  +KF+ +L     LG 
Sbjct: 60  AADVLGIPFYVWDLADRFEHDVIDEFVAAYEAGRTPNPCVRCNERIKFAAVLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ +    V         + R +D  +DQSY L      QL    FPLGD  K 
Sbjct: 120 DAVVTGHHAQLSGAV---------LRRSVDPGKDQSYVLGTLRPDQLAHAIFPLGDTTKT 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIV-HLNGQILGRH 256
            VR  A   GL +ADK DS DICF+  G   D  + +   +  + G +V    G+ L  H
Sbjct: 171 EVRAEAARRGLAVADKPDSHDICFIADG---DTGRWLRDRLGTQPGPVVDAATGETLAEH 227

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   +TIGQRRGL +      G P +V+ +   +  V VGP E+L+V  +      W  
Sbjct: 228 DGAFAFTIGQRRGLRLGRPAPDGRPRYVLDISPVTRTVTVGPAEALDVSHLVADRAVW-- 285

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              +E  VV    C  ++R+    VP   +   D + V  ++   G A GQA V Y  D 
Sbjct: 286 --PYEGPVV----CAAQVRAHGRAVPAIAEGVGDELRVTLDEPLRGTAPGQAVVLYDGD- 338

Query: 373 NEARVLGGGII 383
              RVLGGG +
Sbjct: 339 ---RVLGGGHV 346


>gi|118602730|ref|YP_903945.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166235080|sp|A1AX17|MNMA_RUTMC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118567669|gb|ABL02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 363

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 186/373 (49%), Gaps = 27/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +++V +SGGVDSSV   LL + GY V  + ++ +   +   + G C   QD+ DA++
Sbjct: 6   KNTKIIVGLSGGVDSSVATLLLLKQGYQVEALFMKNW---EEDDKSGYCSVEQDLSDAQK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + D ++V  +  ++   + N V + F   +  G TP P V CN+ +KF   L     LGA
Sbjct: 63  IADKLDVKLHAVNFSADYWNDVFIHFLKEHKKGRTPNPDVLCNQKIKFRVFLEHALSLGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R    + +     ++    +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 123 DKIATGHYAR----IAEKNGTYQLKT-GLDDSKDQSYFLHLLNQYQLSKSLFPLGEINKI 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E G   A+K DS  ICF+ +  + + +    +    +GDIV   GQ +  H G
Sbjct: 178 DVRNIAIENGFVTANKKDSTGICFIGERNFSEFLATYLS--KQQGDIVDEQGQFIKHHQG 235

Query: 259 IINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +  YTIGQR+GL +       GEP FV    +++N   ++ G    L    +   + +W+
Sbjct: 236 LAFYTIGQRKGLKIGGGFGKSGEPWFVADKCIERNELMIVQGNHALLYHQILSASKPHWI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                         C  KIR  Q      + +ND+  + V F++ +  +  GQ+ VFY +
Sbjct: 296 -----STPPTLPLMCSAKIRYRQQSQSCMISQNDNKQIKVVFKQLQRAITPGQSIVFYDN 350

Query: 371 DSNEARVLGGGII 383
            +     LGG II
Sbjct: 351 KT----CLGGAII 359


>gi|305667726|ref|YP_003864013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maribacter sp. HTCC2170]
 gi|88709776|gb|EAR02009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maribacter sp. HTCC2170]
          Length = 396

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 195/400 (48%), Gaps = 43/400 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ +SGGVDSSV A LLK  GY+VIG+ ++ ++    +  +  C   +D  DA  V +
Sbjct: 3   KVVIGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISE-ECPWLEDSNDALIVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D    ++  ++    + Y  G TP P V CNR +KF   L +  QLGAD +
Sbjct: 62  KLGIPFQTVDLSVEYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFLKIALQLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V D G+    +    D  +DQSYFL   +Q+QL    FP+G++ K  VR
Sbjct: 122 ATGHYCRKGTLVNDKGEETFQLLSGKDDNKDQSYFLCQLSQEQLSKTLFPIGNLTKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242
            +A +  L  ADK DSQ +CF+ + +  + ++   +   G+ +E                
Sbjct: 182 QIAADNALITADKKDSQGLCFIGKVRLPEFLQQKLKPKKGVIVEVPSTIEEYQHQVPSFS 241

Query: 243 ------------GDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
                          V  +G+I+G H G   +T GQR+GL V    EPLFV+  D + + 
Sbjct: 242 NKEEELSFYSQKPKYVITDGKIVGEHQGAHYFTKGQRKGLDVGGTKEPLFVIDTDVDENV 301

Query: 290 VIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           +  G  +S   ++R  L     E++W+   L    V +  +   +IR  Q      + + 
Sbjct: 302 IYTGQGKSHPGLYRRTLFVTNAELHWVRSDL-ALKVDESMEVMARIRYRQALQKATIYKI 360

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           D G+YVDFE+ +  +  GQ   +Y  D     ++G G+IS
Sbjct: 361 DSGLYVDFEEKQSAITEGQFVAWYLDD----ELIGSGVIS 396


>gi|326336750|ref|ZP_08202918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691220|gb|EGD33191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 396

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 204/409 (49%), Gaps = 63/409 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LL+R+GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLQREGYEVIGIFMKNWHDDSVTI-SNECPWLEDSNDALMVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E ++  ++      Y  G TP P V CNR +KF+  L +   LGAD +
Sbjct: 62  KLGIPFQTVDMSEPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLELALNLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +  +G++   +    D  +DQSYFL   +QQQL    FP+G+++K  VR
Sbjct: 122 ATGHYCRKE-EIEVNGQKIYRLLTGKDNNKDQSYFLCQLSQQQLEKALFPIGNLQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248
            +A+++ L  A+K DSQ +CFV + +  + +++  A    EG+I+ +             
Sbjct: 181 TIAKQLDLVTAEKKDSQGLCFVGKVRLPEFLQQQLA--PKEGNIIEIPASWQGYQNKIPP 238

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286
                                +G+I+G+H G   +TIGQR+GL V    EPLFV+  +  
Sbjct: 239 VFKSYEDELHYYAKKYNYQPTDGKIVGKHEGAHFFTIGQRKGLHVGGTVEPLFVIETNTQ 298

Query: 287 SSRVIVGP--------RESLEVHRIYLREINWLGDGL----FEDAVVDGFKCFVKIRSSQ 334
           ++ + VG         R +L V +    +++W+   L    F+   VD     V+IR  Q
Sbjct: 299 NNIIYVGQGSKHPGLFRRALFVKK---EDVHWIRPDLALSPFQSMKVD-----VRIRYRQ 350

Query: 335 DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                 +   + G+Y+DF + +  + SGQ  V+Y     E  ++G G I
Sbjct: 351 PLQKAHLYLTNKGLYIDFIQPQSAITSGQFAVWYI----EEELIGSGEI 395


>gi|313665411|ref|YP_004047282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma leachii PG50]
 gi|312949863|gb|ADR24459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma leachii PG50]
          Length = 375

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNANINNDICPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA+ V D +N+  +  D+ + + + V   F   Y    TP P + CN+ +KF   L+   
Sbjct: 64  DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            QL AD +A GHY +      +    +  + +  D  +DQ+YFL    Q+QL    FPL 
Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTNQYELIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ KE VR +A +  L  A+K DS  ICF+ +  + + ++  N      GDIV +   ++
Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQ--NYIPNQTGDIVDIKTNKV 238

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306
           LG+H G++ YTIGQR+G+ ++ M EP +V   DK+  + I+       +  L      + 
Sbjct: 239 LGQHIGVMYYTIGQRKGINLSGMSEPYYVA--DKDVKKNILYVCSTSDQSYLHSTSCLVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           +INW+ D       ++ F+C  K R  Q    V V++ DD  Y V F+K    +  GQ  
Sbjct: 297 DINWILDVSKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY +D      LGG +I
Sbjct: 357 VFYLNDI----CLGGAVI 370


>gi|320540371|ref|ZP_08040021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia symbiotica str. Tucson]
 gi|320029302|gb|EFW11331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia symbiotica str. Tucson]
          Length = 366

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGISGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAAADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIKLHTVNFAAEYWDNVFELFLEEYQAGRTPNPDILCNKEIKFKAFLEFAAEDLDADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +     DGK    + R +D  +DQSYFL+  + +Q+    FP+G++KK  V
Sbjct: 125 IATGHYVRRQ---DVDGKSH--LLRGIDSNKDQSYFLYTLSHEQVAQSLFPVGELKKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ + K+ D + R     A  G I  ++GQ +G+H G++
Sbjct: 180 RCIAEQLALVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGLIASVDGQTVGKHQGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
            +T+GQR+GLG+     +  EP +VV  D  ++ ++V      PR  L    +  ++++W
Sbjct: 238 YHTLGQRKGLGIGGMKDSSEEPWYVVDKDVANNMLVVAQGHDHPR--LMSAGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           + D +      + F+C VK R  Q  +   V   DD  + V F++    V  GQ+ VFY 
Sbjct: 296 V-DRMPRS---EPFRCTVKTRYRQQDILCRVTPLDDQRIEVRFDEPVAAVTPGQSAVFYQ 351

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 352 GEI----CLGGGIIE 362


>gi|325927859|ref|ZP_08189083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas perforans 91-118]
 gi|325541699|gb|EGD13217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas perforans 91-118]
          Length = 378

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 185/374 (49%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSALR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  N+   +   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 QE--CLGGAVIAAT 359


>gi|294668754|ref|ZP_06733847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309271|gb|EFE50514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 367

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 188/372 (50%), Gaps = 24/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ GY V G+ +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGYQVRGIFMQNWEDDDNDE---YCSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GAD +A
Sbjct: 67  IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLGD++K  VR 
Sbjct: 127 TGHYARKEVRNG-----MHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGDLEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +G H G++ Y
Sbjct: 182 LAFEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKTVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P  +    +D+ V + F++ +  V  GQ+ V Y  D      
Sbjct: 296 RPREGRYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAVLYDGDV----C 350

Query: 378 LGGGIISGSKRS 389
           LGGGII  + + 
Sbjct: 351 LGGGIIMSTDKP 362


>gi|298206785|ref|YP_003714964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Croceibacter atlanticus HTCC2559]
 gi|83849417|gb|EAP87285.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Croceibacter atlanticus HTCC2559]
          Length = 396

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 195/402 (48%), Gaps = 49/402 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V + 
Sbjct: 4   VVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDTVTISD-ECPWLDDSNDAMLVAEK 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD +A
Sbjct: 63  LGIPFQTVDLSEEYKERIVDYMFNEYKNGRTPNPDVLCNREIKFDVFMKIAMSLGADYVA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R +  +  DG+    +    D  +DQSYFL   +Q+QL    FP+G+++K  VR 
Sbjct: 123 TGHYCR-KSSIEKDGETIYQLLSGKDNNKDQSYFLCQLSQEQLSKTLFPIGELQKSEVRK 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------------- 248
           +A E  L  ADK DSQ +CF+ + +  D +++       EGDIV +              
Sbjct: 182 IAAEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLK--PKEGDIVEIDSTLDQYAKDTKED 239

Query: 249 --------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
                               +G+++G+H G   +T GQR+GLGV    EPLFV+  D   
Sbjct: 240 FNTTEEELAYLSKKFTYNFEDGKVVGKHQGAHYFTKGQRKGLGVGGTPEPLFVIDTDVEE 299

Query: 288 SRVIVGP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + +  G  ++   ++R    +   EI+W+ + L  D   D      +IR  Q      + 
Sbjct: 300 NIIYTGQGKQHPGLYRRGLFVSPHEIHWIREDLKLDT-GDTMNVMARIRYRQTLEKATLH 358

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + + G+YV F+  +  +A GQ   +Y     +  ++G G+IS
Sbjct: 359 QTEHGLYVIFDNPQSAIAEGQFVAWY----QDEELIGSGVIS 396


>gi|298369001|ref|ZP_06980319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283004|gb|EFI24491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 367

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 192/383 (50%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++++  P++  ++V +SGGVDSSV AALLK+ G+ V GV +Q +      +    C   Q
Sbjct: 1   MNIENTPQN--IIVGLSGGVDSSVTAALLKQQGHRVHGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADILGIDIDIVNFAAQYKDKVFAYFLKEYGAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YALEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLQPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 AVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAGKNLAKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +DD   + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKEGRYTCKTRYRMADAPCGL-RYLDDDTAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGG+I  + + 
Sbjct: 344 LYDGDV----CLGGGVIMATDKP 362


>gi|189461693|ref|ZP_03010478.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136]
 gi|189431580|gb|EDV00565.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136]
          Length = 353

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 189/374 (50%), Gaps = 30/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++ MSGG DSSV A LL+  GY+V GVT + Y     ++          + DAR 
Sbjct: 3   ENNKVLLGMSGGTDSSVAALLLQDAGYEVTGVTFRFYEKDNNTEY---------LDDARE 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ +++SH  +D    FR  +I  F + Y  G TP+PC  CN  +K+  L  +  + G 
Sbjct: 54  LCERLHISHITYDARNEFRERIISYFINEYMTGRTPVPCTLCNNYLKWPLLKKLADEKGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY++ R     DG     +    D+++DQS+FL+   Q  L  +  P+G + K 
Sbjct: 114 YHFATGHYVQKR---NIDGYWH--ITTGTDVDKDQSFFLWGLPQDILQRMLLPMGKLTKN 168

Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            VR++A E G L  A K DS  +CF        + + +   + + G+    +G  LG+H 
Sbjct: 169 KVREIAAERGFLKAAHKRDSLGVCFCPMDYRSFLKEHVKKELIMPGNFYDESGNCLGKHE 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLREINWLG-DGL 315
           G   YTIGQRRGLG+ + + LFV  +   ++ +I+  +  SL    +YL + +      L
Sbjct: 229 GYPFYTIGQRRGLGIYLNKALFVKQIIPQTNSIILSDQLCSLGQTEMYLTDWHVTNPSAL 288

Query: 316 FE--DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
           FE  D ++      VKIR  +      V    DG +++   +    +A+GQA  FY  D 
Sbjct: 289 FETTDEII------VKIRYRKQANRCTVIPTPDGQLHIKLHEPLTSIAAGQAAAFYRDDV 342

Query: 373 NEARVLGGGIISGS 386
               VLGGGII  S
Sbjct: 343 ----VLGGGIICSS 352


>gi|315146247|gb|EFT90263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4244]
          Length = 374

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 186/357 (52%), Gaps = 26/357 (7%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
            A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D I + +Y  ++E+ 
Sbjct: 22  TALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKE 78

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +ATGHY +    V  
Sbjct: 79  YWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VET 134

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR +A   GL  A K 
Sbjct: 135 DENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIADRAGLATAKKK 194

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275
           DS  +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ YTIGQR+GLG+  G
Sbjct: 195 DSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGG 252

Query: 276 ----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFV 328
               EP FV+  D  ++ + VG     E L    +   E+++  D      +   F C  
Sbjct: 253 GKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD----TPMPKEFDCTA 308

Query: 329 KIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           K R  Q  +PV V  ++DG    V F++    V  GQA VFY    +    LGGG+I
Sbjct: 309 KFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY----DGMECLGGGLI 361


>gi|325915390|ref|ZP_08177707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538437|gb|EGD10116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 378

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 194/393 (49%), Gaps = 33/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAYRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATVFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIADHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSQWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEFP 405
            E   LGG +I+    +DA  E  L+  G  FP
Sbjct: 348 EE--CLGGAVIAA---TDAPLERQLA--GSSFP 373


>gi|171464102|ref|YP_001798215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193640|gb|ACB44601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 370

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 189/385 (49%), Gaps = 28/385 (7%)

Query: 9   LNSLDLDKN-PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           LNS  +  + PK  +VV+ MSGGVDSSV A +LK  G++VIG+ ++ +    + +    C
Sbjct: 4   LNSSSIPSSRPK--KVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDSDEY---C 58

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A QD  D   V D I +     ++   +R  V   F   YAAG TP P V CN  +KF 
Sbjct: 59  SARQDWLDVVSVADMIGIDVEAVNFATEYRECVFADFLREYAAGRTPNPDVLCNAEIKFK 118

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L     LGAD +ATGHY R R    + GK +  + + +D+ +DQSYFL   TQQQL +
Sbjct: 119 AFLDHAMSLGADAIATGHYARVR---HESGKVQ--LLKAVDVSKDQSYFLHRLTQQQLAN 173

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FPLG++ K  VR +A ++GL  A K DS  ICF+ +  + + + R    +   G I  
Sbjct: 174 VMFPLGEIPKTEVRKIADQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRVP--GPIKT 231

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLE 299
             G+ +G H G+  +T+GQR+G+G+       G+  +V   D  ++ + V        L 
Sbjct: 232 PEGKTVGEHMGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDIPNNTLYVAQGHEHPWLL 291

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
              +   + +W+     E   +  +    + R +     +          + F  ++  V
Sbjct: 292 AKTLSAMDASWVSG---EVPSLGSYSAKTRYRQADSACTMSAGAEAQSFELSFLDAQWAV 348

Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384
             GQ+ V Y  D      LGGGIIS
Sbjct: 349 TPGQSAVLYDGDI----CLGGGIIS 369


>gi|289666030|ref|ZP_06487611.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 378

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RTAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVKVHFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 EE--CLGGAVIAAT 359


>gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equinus ATCC 9812]
 gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equinus ATCC 9812]
          Length = 373

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 193/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QVGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 125 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++ 
Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+         P FVV  D + + + VG     ESL    +    +++  D
Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSVHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++      K R  Q    V V    D   V F + +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 353 --ECLGGGII 360


>gi|170732018|ref|YP_001763965.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia MC0-3]
 gi|205811368|sp|B1JVW3|MNMA_BURCC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169815260|gb|ACA89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia MC0-3]
          Length = 391

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 182/384 (47%), Gaps = 37/384 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       G+P FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362
               +   DGF C  K R  Q D   VF                   + F+ ++  V  G
Sbjct: 295 ----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAVTPG 350

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q+ V Y  +      LGGGII  +
Sbjct: 351 QSAVLYDGEI----CLGGGIIESA 370


>gi|317402803|gb|EFV83347.1| tRNA-specific 2-thiouridylase mnmA [Achromobacter xylosoxidans C54]
          Length = 372

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 183/379 (48%), Gaps = 28/379 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ DA  
Sbjct: 7   KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAAS 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 64  VADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R    + G  R  + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 124 EHIATGHYARVREVAAEGGGSRFELLKALDGSKDQSYFLHRLNQAQLSRTLFPLGEIHKT 183

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257
            VR +A E+GL  A K DS  ICF+ +  + + + R    +  E G I+   GQ +GRH 
Sbjct: 184 EVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGPILTPEGQKVGRHE 240

Query: 258 GIINYTIGQR----------RGLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIY 304
           G+  YT+GQR          R       E  +V    L++N   V+ G     L    + 
Sbjct: 241 GLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSGSLR 300

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
            ++++W+     +      +    + R + D          +G  +DF + +  V  GQ+
Sbjct: 301 AQDVSWVAG---QAPAAGEYGAKTRYRQA-DAACRLGDATTEGFTLDFAEPQWAVTPGQS 356

Query: 365 CVFYTSDSNEARVLGGGII 383
            V Y  D      LGGGII
Sbjct: 357 AVLYDGDI----CLGGGII 371


>gi|253998326|ref|YP_003050389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|313200400|ref|YP_004039058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. MP688]
 gi|253985005|gb|ACT49862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|312439716|gb|ADQ83822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. MP688]
          Length = 361

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 185/373 (49%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GYDV+G+ ++ +      +    C A QD+ DA  V D
Sbjct: 5   RVVVGLSGGVDSSVTALLLKEQGYDVVGLFMKNWEDDDTDE---YCPAKQDLIDAAAVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++ + ++  V   F   Y AG TP P + CN  +KF   L     LGAD++
Sbjct: 62  KIGIELEAVNFSKEYKERVFQNFLEEYQAGRTPNPDIFCNSEIKFKAFLDHAMGLGADLI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R   G        + +  D  +DQSYFL+   Q QL    FPLG + K  VR
Sbjct: 122 ATGHYAQVREKNG-----LFQLLKAEDGSKDQSYFLYRLNQLQLSKTLFPLGGLLKREVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
           ++A   GL  A K DS  ICF+ +  + + + R    +  E G++    G+++G H G++
Sbjct: 177 EIAHREGLVTAGKKDSTGICFIGERPFREFLNRY---LPREPGEMQTPEGKVVGEHEGLM 233

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHR-IYLREINWLG 312
            YT+GQR+GL +     + GEP FV   D   + +IV  G    L  +  +   +++W+ 
Sbjct: 234 YYTLGQRQGLKIGGSRESNGEPWFVAGKDMQRNVLIVVQGHDHPLLCNDGLVASQLHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               E   V       K R  Q   P  + R ++    + F + +  +  GQ+ V Y S 
Sbjct: 294 GEAPETHWVYA----AKTRYRQPDAPCEIDRLEESETEIRFGQPQWAITPGQSAVVYESQ 349

Query: 372 SNEARVLGGGIIS 384
                 LGGGII+
Sbjct: 350 V----CLGGGIIT 358


>gi|153809107|ref|ZP_01961775.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185]
 gi|149128440|gb|EDM19659.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185]
          Length = 361

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQERGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +LG 
Sbjct: 50  LAAQMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLGC 109

Query: 139 DVLATGHYIRSR-----LYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 AWVATGHYSRLEERNGDIYIVAGDDDK------------KDQSYFLWQLGQDVLRRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LGD  K  VR+   + G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGDYTKVKVREYLADKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDNEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L    +    
Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTDYMLTE- 275

Query: 308 INWLGDGLFEDAVVDG---FKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD    F+C    V+IR    P+P  V+R  DG + V F ++   +A
Sbjct: 276 ---------QDKIVDERELFQCENLTVRIRYRSRPLPCRVKRLADGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349


>gi|315167557|gb|EFU11574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1341]
          Length = 351

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 185/354 (52%), Gaps = 26/354 (7%)

Query: 39  LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98
           LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D I + +Y  ++E+ + +
Sbjct: 2   LLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWD 58

Query: 99  AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158
            V   F + Y  G TP P V CN+ +KF   L    QLGAD +ATGHY +    V  D  
Sbjct: 59  RVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VETDEN 114

Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
               M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR +A   GL  A K DS 
Sbjct: 115 GVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIAERAGLATAKKKDST 174

Query: 219 DICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG--- 275
            +CF+ +  + + +   N   A +G++V  +G+I G+H+G++ YTIGQR+GLG+  G   
Sbjct: 175 GVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKT 232

Query: 276 -EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR 331
            EP FV+  D  ++ + VG     E L    +   E+++  D      +   F C  K R
Sbjct: 233 QEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD----TPMPKEFDCTAKFR 288

Query: 332 SSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             Q  +PV V  ++DG    V F++    V  GQA VFY    +    LGGG+I
Sbjct: 289 YRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY----DGMECLGGGLI 338


>gi|269214555|ref|ZP_05986816.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria lactamica ATCC 23970]
 gi|269209446|gb|EEZ75901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria lactamica ATCC 23970]
          Length = 367

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 24/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L      GAD +A
Sbjct: 67  VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG ++K  VR 
Sbjct: 127 TGHYARKEVCNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +G H G++ Y
Sbjct: 182 LAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P  +    +D+   + F++ +  V  GQ+ V Y  D      
Sbjct: 296 CPKAGHYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLYDGDI----C 350

Query: 378 LGGGIISGSKRS 389
           LGGGII  + + 
Sbjct: 351 LGGGIIQTTDKP 362


>gi|288906423|ref|YP_003431645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus UCN34]
 gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus UCN34]
          Length = 373

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +++   +DG     M R  D  +DQ+YFL   +Q+QL  + FPLG ++K  VR
Sbjct: 125 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H G++ 
Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR GLG+        +P FVV  D + + + VG     +SL    +    I++  D
Sbjct: 239 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSIHFTRD 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            + E+  ++      K R  Q    V V        V F++ +  +  GQA VFY  +  
Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGAKAEVVFDEPQRAITPGQAVVFYDGE-- 352

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 353 --ECLGGGII 360


>gi|322412887|gb|EFY03795.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 373

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 195/379 (51%), Gaps = 29/379 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 6   NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +    +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQVKR--DEDGVVH--MLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G+
Sbjct: 179 VRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    ++  
Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASIVH-- 294

Query: 312 GDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
               F   V + F  KC  K R  Q    V V    D   V F + +  +  GQA VFY 
Sbjct: 295 ----FTREVPEEFTLKCTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY- 349

Query: 370 SDSNEARVLGGGIISGSKR 388
            D  E   LGGG+I  + R
Sbjct: 350 -DGEEC--LGGGMIDMAYR 365


>gi|254523199|ref|ZP_05135254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas sp. SKA14]
 gi|219720790|gb|EED39315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas sp. SKA14]
          Length = 380

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 189/393 (48%), Gaps = 32/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A  L + G  V G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 61  LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     + ++ R  D  +DQSYFL    QQQL    FP+GD++K  +R
Sbjct: 121 ATGHYARVTQRGG-----QWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKSDLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGII 260
            +AR++GL    K DS  ICF+ +  + + + R     A  G I+   +G ++  H G+ 
Sbjct: 176 RIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RES--LEVHRIYLREINWLG 312
            +T+GQR GL +         P +VV  D  S+ + V   R+S  +   R+     +W+ 
Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSRWMLSDRLRSETAHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      F+C  + R  Q   P  V+  DDG V V F + +  V  GQ+ V Y  D
Sbjct: 294 G----SPPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVSFARPQRAVTPGQSLVLYDGD 349

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                 LGG +I+    +DA  E  L      F
Sbjct: 350 V----CLGGAVIAA---TDAPLEQRLRTTPSPF 375


>gi|56475956|ref|YP_157545.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Aromatoleum aromaticum EbN1]
 gi|81598997|sp|Q5P7R7|MNMA_AZOSE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Aromatoleum aromaticum EbN1]
          Length = 374

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 193/388 (49%), Gaps = 35/388 (9%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + +P  M+VVV MSGGVDSSV A LLK+ G+DV G+ ++ +      +    C   QD+ 
Sbjct: 4   NTDPNGMKVVVGMSGGVDSSVTALLLKQQGFDVTGLFMKNWEDDDDDE---YCSTRQDLV 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   VCD I +   V ++   +++ V   F   Y AG TP P V CN  +KF   L    
Sbjct: 61  DVASVCDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDVLCNSEIKFRCFLDHAM 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY + R +  +DG+    + +  D  +DQSYFL+   Q QL    FPLG 
Sbjct: 121 ALGADRIATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGA 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           + K  VR +A E GL +A+K DS  ICF+ +  + + + R        G+I +L +G+++
Sbjct: 180 LYKRDVRRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--MRPGEIRNLDDGRVI 237

Query: 254 GRHNGIINYTIGQRRGL----------GVAMGEPLFVVYLDKNSSRVIV---GPRESLEV 300
           G H G++ +TIGQR+GL          G    +  +V   D  ++ +         +L  
Sbjct: 238 GEHQGLMYHTIGQRKGLHIGGIKGRQDGAGEHDAWYVAGKDVKANVLYAVQGHEHPALLK 297

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFV---KIRSSQDPVPVFVQR-NDDGVYVDFEKSE 356
            R+   +++W+       A  D    +V   K R     +P  ++   D G  + F + +
Sbjct: 298 TRLSATDLHWI-------AGRDPHTHWVYTAKPRYRTPDMPCEIEALVDGGAEIVFAEPQ 350

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             +  GQ+ V Y S       LGGG+I+
Sbjct: 351 WALTPGQSVVVYESKV----CLGGGVIA 374


>gi|222112576|ref|YP_002554840.1| tRNA-specific 2-thiouridylase mnma [Acidovorax ebreus TPSY]
 gi|254811451|sp|B9MIA2|MNMA_DIAST RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221732020|gb|ACM34840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax ebreus TPSY]
          Length = 370

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 33/379 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  V D
Sbjct: 5   RVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---FCSSRQDFLDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ +
Sbjct: 62  VIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    +       + + +D  +DQSYFL    Q QL    FP+GD+ K  VR
Sbjct: 122 ATGHYARVRQ---NPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGDLHKTEVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++GL  A K DS  ICF+ +  + + + R        G I+   G+ LGRH G+  
Sbjct: 179 RIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQ--HAPGPILDDRGRKLGRHVGLSF 236

Query: 262 YTIGQRRGLGV----------AMGE--PLFVV--YLDKNSSRVIVGPRES-LEVHRIYLR 306
           YT+GQR+GLG+            G+  P FV    L+ N+ RV+ G     L  HR+  +
Sbjct: 237 YTLGQRQGLGIGGVKEKGAQRGAGDHAPWFVARKELETNTLRVVQGHEHPWLLSHRLDAQ 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           + +W+              C  K R   QD     +    D   + F +++  V  GQ+ 
Sbjct: 297 DASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFSLQFPEAQWAVTPGQSA 351

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  +      LGGG+I+
Sbjct: 352 VLYDGEV----CLGGGVIA 366


>gi|296315198|ref|ZP_06865139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria polysaccharea ATCC 43768]
 gi|296837925|gb|EFH21863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria polysaccharea ATCC 43768]
          Length = 367

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 24/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L      GAD +A
Sbjct: 67  VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVVQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG ++K  VR 
Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +G H G++ Y
Sbjct: 182 LAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P  +    +D+   + F++ +  V  GQ+ V Y  D      
Sbjct: 296 RPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLYDGDI----C 350

Query: 378 LGGGIISGSKRS 389
           LGGGII  + + 
Sbjct: 351 LGGGIIQTTDKP 362


>gi|259046678|ref|ZP_05737079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella adiacens ATCC 49175]
 gi|259036843|gb|EEW38098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella adiacens ATCC 49175]
          Length = 374

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 192/373 (51%), Gaps = 27/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V 
Sbjct: 6   IRVVVGMSGGVDSSVTALLLKEAGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    QLGAD 
Sbjct: 63  EQIGIPYYSVNFEKEYWDRVFEYFLREYRLGRTPNPDVMCNKEVKFQAFLDYALQLGADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY R    V  D      + R  D  +DQ+YFL    Q+QL    FP+G ++K+ V
Sbjct: 123 VAMGHYAR----VEKDENGIVHLLRGKDNNKDQTYFLSQLNQKQLEKAMFPIGHLEKKEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A +  L  A K DS  +CF+ +  + + +   N   A  G +V L+G++ G H G++
Sbjct: 179 REIAEKYDLATAKKKDSTGVCFIGERNFNEFLS--NYLPAKPGKMVTLDGEVKGDHAGLM 236

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            YTIGQR+GLG+       +P FV+  D +++ + VG      +L    +   +I +  D
Sbjct: 237 YYTIGQRQGLGIGGGGKTNDPWFVIGKDLSTNTLYVGQGFHHPNLYSDSLTATDIQFTND 296

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
              E      F+C  K R  Q    V V   +++     V F++    +  GQA VFY  
Sbjct: 297 LPREKT----FECTAKFRYRQQDTKVKVVLDEKDPTRATVIFDEPVRAITPGQAVVFY-- 350

Query: 371 DSNEARVLGGGII 383
             N    LGGGII
Sbjct: 351 --NGEECLGGGII 361


>gi|29349296|ref|NP_812799.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341204|gb|AAO78993.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 351

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 185/379 (48%), Gaps = 59/379 (15%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +   + + 
Sbjct: 1   MSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAARMGIE 46

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L    +ATGHY
Sbjct: 47  HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIATGHY 106

Query: 147 IR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            R       +Y+  GDD K            +DQSYFL+   Q  L    FPLGD  K  
Sbjct: 107 SRLEERSGHIYIVAGDDDK------------KDQSYFLWRLGQDILKRCIFPLGDYTKIK 154

Query: 200 VRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           VR+   E G +   K  +S ++CF+ QG Y D ++     +  E   G  V+  G  LG+
Sbjct: 155 VREYLAEKGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLGQ 213

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +            
Sbjct: 214 HKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAE--------- 264

Query: 316 FEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   VA GQ+ VFY
Sbjct: 265 -QDRIVDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFY 323

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLGG  I+  +
Sbjct: 324 DG----RRVLGGAFIASQR 338


>gi|261493287|ref|ZP_05989814.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311137|gb|EEY12313.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 406

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L    L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 35  KLTPEQLAENSKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 90

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 91  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 150

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R      DD   +  + R +D  +DQSYFL+A  ++Q+ 
Sbjct: 151 AFLEYAAEDLGADYIATGHYVRR---TSDDQDAK--LLRGLDENKDQSYFLYALNKKQIG 205

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 206 QSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 263

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ +IV       +L
Sbjct: 264 TVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHDNSAL 323

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357
               +  +++ W+        + +  +C VK R  Q  +   +Q  +D+ + V F++ ++
Sbjct: 324 LSSGLIAKQLTWVD----MQPLRENLRCTVKTRYRQADIACEIQVLDDETIRVMFDEPQI 379

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGGII 
Sbjct: 380 AVTPGQSAVFYLGEV----CLGGGIIE 402


>gi|261496469|ref|ZP_05992849.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307672|gb|EEY08995.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 405

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L    L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C
Sbjct: 34  KLTPEQLAENSKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 89

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF 
Sbjct: 90  TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 149

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    + LGAD +ATGHY+R      DD   +  + R +D  +DQSYFL+A  ++Q+ 
Sbjct: 150 AFLEYAAEDLGADYIATGHYVRR---TSDDQDAK--LLRGLDENKDQSYFLYALNKKQIG 204

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I 
Sbjct: 205 QSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 262

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
            + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ +IV       +L
Sbjct: 263 TVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHDNSAL 322

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357
               +  +++ W+        + +  +C VK R  Q  +   +Q  +D+ + V F++ ++
Sbjct: 323 LSSGLIAKQLTWVD----MQPLRENLRCTVKTRYRQADIACEIQVLDDETIRVMFDEPQI 378

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ VFY  +      LGGGII 
Sbjct: 379 AVTPGQSAVFYLGEV----CLGGGIIE 401


>gi|270156742|ref|ZP_06185399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae D-4968]
 gi|289164811|ref|YP_003454949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae NSW150]
 gi|269988767|gb|EEZ95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae D-4968]
 gi|288857984|emb|CBJ11844.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae NSW150]
          Length = 361

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 194/371 (52%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LL+  GY V G+ ++ +   +   + G C A QD+ DA+ VC+
Sbjct: 4   KVIIGMSGGVDSSVAAWLLQETGYQVEGLFMKNW---EQDDKDGFCPAAQDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + +   V   F S Y  G TP P V CN+ +KF   L     LGAD +
Sbjct: 61  QLRIPLHTTNFSKEYWQNVFTYFLSEYEKGRTPNPDVLCNKEIKFKAFLDHALTLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +  GD G     + +  D ++DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNVI-DGDTG----FLFKAKDRDKDQTYFLHAVDPKALGKTLFPIGDYTKTEIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   ++     +A  G+I +  G++LG+H+G++ 
Sbjct: 176 EFAQKLGLVTHAKKDSTGICFIGEKRFKSFLQEFI--LARPGEIKNTEGKVLGKHDGLMF 233

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+        +P +VV  D +++ + V        L  H +    I+WL D
Sbjct: 234 YTIGQRQGLGIGGLQNTSDDPWYVVDKDISTNTLYVAQGSQHPMLYAHGLVCGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
              +D +     C+ K R  Q      +   D +  YV F   +  V  GQ  VFY  D 
Sbjct: 294 --CKDRLP--LTCYAKTRYRQAEQGCMISPEDGNQHYVMFSNPQRAVTPGQYIVFY--DK 347

Query: 373 NEARVLGGGII 383
           N+   LGG  I
Sbjct: 348 NQC--LGGATI 356


>gi|254246300|ref|ZP_04939621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia PC184]
 gi|124871076|gb|EAY62792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia PC184]
          Length = 447

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 181/381 (47%), Gaps = 37/381 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 61  RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 117

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 118 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 177

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 178 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 232

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 233 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 290

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       G+P FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 291 YTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 350

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362
               +   DGF C  K R  Q D   VF                   + F+ ++  V  G
Sbjct: 351 ----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAVTPG 406

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ V Y  +      LGGGII
Sbjct: 407 QSAVLYDGEI----CLGGGII 423


>gi|12045151|ref|NP_072962.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma genitalium G37]
 gi|1723144|sp|P47537|MNMA_MYCGE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3844874|gb|AAC71516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma genitalium G37]
 gi|166078872|gb|ABY79490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 367

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 193/377 (51%), Gaps = 33/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---------LYNSRKASKRKGSCCAGQDV 73
           V + +SGGVDS+V A LLK+   +VIGV ++          Y  +K +  K  C + QD 
Sbjct: 8   VFIGLSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQDF 67

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A+++ +++ +     +  E + N V +P   S+  G TP P + CNR +KF  L    
Sbjct: 68  QQAKKIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHDFC 127

Query: 134 RQLGADVL-ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +Q+  + L ATGHY +  +      + + ++  P D  +DQ+YFL    ++Q  ++ FPL
Sbjct: 128 KQINPNSLFATGHYAKINMI-----ENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPL 182

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLN 249
            D+KK +VR++ARE   ++ADK DS  ICF+ +  + D +K    +  G+  +       
Sbjct: 183 ADLKKITVRNIARENNWEVADKKDSTGICFIGERHFSDFLKNYLPVKKGLIKDWK----T 238

Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG-PRESLEVHRIYLRE 307
            Q +  H+G+  YTIGQR GL +  + +  FVV  D  ++ + V   +E L    I L +
Sbjct: 239 KQTISEHDGVWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            NW    L+    +   +  V+IR +Q P +      +D+ + + F+   + VASGQ  V
Sbjct: 299 FNW----LYTPKQLPS-QVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGV 353

Query: 367 FYTSDSNEARVLGGGII 383
            YT D      LG G+I
Sbjct: 354 LYTLDQ---ICLGAGLI 367


>gi|167564053|ref|ZP_02356969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia oklahomensis EO147]
          Length = 409

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 185/412 (44%), Gaps = 58/412 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGARTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ------------------------------DPVPVFVQR 343
               +   DG +C  K R  Q                               P  V    
Sbjct: 295 ----EPPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAADA 350

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII--SGSKRSDAVE 393
           + +   + F++ +  V  GQ+ V Y  D      LGGGII  + + R DA  
Sbjct: 351 SGERFSLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAH 398


>gi|319954152|ref|YP_004165419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellulophaga algicola DSM 14237]
 gi|319422812|gb|ADV49921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellulophaga algicola DSM 14237]
          Length = 396

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 195/400 (48%), Gaps = 43/400 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   KVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDTVTISD-ECPWLEDSNDAMIVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D    ++  ++      YA G TP P V CNR +KF   + +  QLGAD +
Sbjct: 62  KLGIPFQTVDLSAEYKERIVDYMFDEYAKGRTPNPDVLCNREIKFDVFMKIALQLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +  +    DG     +    D  +DQSYFL   +Q+QL    FP+G++ K  VR
Sbjct: 122 ATGHYCKKGIIKNSDGSETYQLLAGEDPNKDQSYFLCQLSQEQLAKTLFPVGELLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242
            +A    L  ADK DSQ +CF+ + +  D ++   +   G+ +E                
Sbjct: 182 RIAAANELITADKKDSQGLCFIGKVRLPDFLQQKLKPKKGVIIEVPSTIAHFQEAPTEFL 241

Query: 243 -----------GDIVHL-NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
                        I HL +G+++G H G   +T GQR+GL V    EPLFV+  D + + 
Sbjct: 242 NKNEELAYFAKKPIYHLTDGKVVGNHQGAHYFTKGQRKGLDVGGTKEPLFVIETDVDENI 301

Query: 290 VIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           +  G  ++   ++R  L     E++W+   L    + D  +   +IR  Q+     + + 
Sbjct: 302 IYTGQGKAHPGLYRRTLFVSDAELHWVRTDL-ALKMDDSLQVLARIRYRQELQKATLYKV 360

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + G+YVDFE+ +  +  GQ   +Y  D     ++G G+IS
Sbjct: 361 EGGMYVDFEEKQSAITEGQFVAWYLKDD----LIGSGVIS 396


>gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas albilineans GPE PC73]
 gi|283473444|emb|CBA15949.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Xanthomonas albilineans]
          Length = 397

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 184/387 (47%), Gaps = 37/387 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----------NSRKASKRK---GSCC 68
           R++V +SGGVDSSV A  L + G+ V G+ +Q +          ++  A  RK    +C 
Sbjct: 5   RIMVGVSGGVDSSVAAWQLVQQGHTVSGLFMQNWADDGNGDVHDSASIAEDRKPKATTCR 64

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D  DA  VC  + +  +  D+ + +   V   F + YAAG TP P V CNR VKF  
Sbjct: 65  AEADRRDAVAVCGMLGIPFHFRDFSKEYWQGVFAHFLAEYAAGRTPNPDVLCNREVKFKH 124

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L   R LGA+ +ATGHY R          RR  + R +D  +DQSYFL    Q QL   
Sbjct: 125 FLDAARDLGAERIATGHYARVAFV-----DRRWRLLRGLDRNKDQSYFLHQLGQAQLAAT 179

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G++ KE VR +AR+ GL    K DS  ICF+ +  +   + R     A  G+I   
Sbjct: 180 LFPVGELPKEQVRRIARQAGLPTHAKKDSTGICFIGERDFRTFLSRYLP--ARRGEIRDP 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHR 302
           + QI+  H G+  +T+GQR GL +         P +V+  D   + + V   R+S  +  
Sbjct: 238 HEQIVAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVIGKDVARNVLYVDQDRDSPHLMA 297

Query: 303 IYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGV 359
             LR    +W+            F C  + R  Q   P  V+  DDG + V F + +  V
Sbjct: 298 TQLRSESAHWIAGA----PPARHFACRAQTRYRQADEPCMVEIRDDGTLTVQFTRPQRAV 353

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
             GQ+ V Y  +      LGG +I+ +
Sbjct: 354 TPGQSLVLYQGEE----CLGGAVIATT 376


>gi|78356066|ref|YP_387515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|123552952|sp|Q313S6|MNMA_DESDG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78218471|gb|ABB37820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 356

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 173/368 (47%), Gaps = 19/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VA+SGG DS      +   G+ V  +     +     +         +     + C
Sbjct: 1   MHIAVAVSGGTDSLFALLQVLEAGHQVTALHAHFLSPHDTPE-----TTAHNTQAIEKAC 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +    +V D    FR  VI PF  +Y  G TP PC  CN ++KF  L    R+LGA  
Sbjct: 56  RALGADFHVEDLSAAFRKHVIEPFIDAYRQGRTPNPCARCNASMKFGLLADTARKLGAQA 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +   G    +  R  D  +DQSYFL    Q +L    FPLG  +K+ V
Sbjct: 116 IATGHYARLQPDLPRPGNTVSLW-RGDDPAKDQSYFLSLVPQHRLACAVFPLGGWRKQDV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R   ++ G+     S+SQ+ICF+    Y   +    AG+   G +V  +G ++G HNG+ 
Sbjct: 175 RAHLKQRGIVPPLPSESQEICFIPGDDYRAYLTAHAAGLPGAGPMVLRDGHVVGHHNGLW 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFEDA 319
            YT GQRRGLG+A  EPL+V+  D + + ++VG R+ L         +N L     + DA
Sbjct: 235 QYTEGQRRGLGIAWSEPLYVLEKDVSRNALVVGTRKQLTARGCRCVGVNTLVPPDQWPDA 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           V      +VK R  Q  +   V  + DG   + V F  S    A+GQ    Y +     R
Sbjct: 295 V------YVKTRYRQTMIAAQVTPDADGADTMRVIFAASHTPPAAGQVAAVYDA---AGR 345

Query: 377 VLGGGIIS 384
           VL GGII+
Sbjct: 346 VLAGGIIA 353


>gi|160915329|ref|ZP_02077542.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991]
 gi|158433128|gb|EDP11417.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991]
          Length = 387

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 195/376 (51%), Gaps = 29/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ +SGGVDS+V A LLK  GYDV    ++ +++   +   G+       C   QD  
Sbjct: 5   KVLLGLSGGVDSAVAAYLLKEAGYDVTCAFMRNWDAYANNDILGNPTISNEVCPQEQDFM 64

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V + + +     D+ + + + V   F S Y  G TP P + CN+ +KF   L+   
Sbjct: 65  DAKAVAEKLELPLLRVDFVKEYWDHVFQYFLSEYEKGRTPNPDILCNKYIKFDAFLNYAN 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++G D++A GHY +      + G +   + R  D  +DQ+YFL    QQ L    FP+G 
Sbjct: 125 KMGFDMVAMGHYAQV-----EHGPKESRLIRGADTNKDQTYFLAQVPQQSLQHALFPIGH 179

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252
           ++K  VR +A+E+ LD ++ K DS  ICF+ +  +   +   N   + +GDIV +   ++
Sbjct: 180 LEKHEVRQIAKELHLDSVSAKKDSTGICFIGERNFKAFLS--NYLPSKDGDIVDIESLEV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVGPR-ESLEVHRIYLREI 308
           +GRH G++ YTIGQR+GLG+   + P FVV  D  KN   V  G   + L  +   +  +
Sbjct: 238 IGRHAGVLYYTIGQRKGLGIGGNKGPWFVVGKDVEKNVLYVTNGNESDWLFTNSCIVSGV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NW  +    +   + + C  K R  Q D   V    +D+ V+V + +    V SGQ  VF
Sbjct: 298 NWFSN----ERPSEDYACTAKFRYRQADNAVVLRFIDDNTVFVRYSQKVAAVTSGQEAVF 353

Query: 368 YTSDSNEARVLGGGII 383
           Y +++     LGGG+I
Sbjct: 354 YQNET----CLGGGVI 365


>gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 373

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 184/383 (48%), Gaps = 46/383 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R VV +SGGVDSSV A LL + G  + G+ +Q ++   +    G C A +D  DA  VC 
Sbjct: 6   RTVVGVSGGVDSSVAAWLLAQSGEPLAGLFMQNWDDDGS----GECRAEEDRRDAVAVCG 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+ + +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 62  RLGIPFHFRDFSKEYWAGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V  +G R R++ R  D ++DQ+YFL    Q QL    FP+G + K  VR
Sbjct: 122 ATGHYAQ----VLHEGGRWRLL-RGADRDKDQTYFLHQLGQAQLAATLFPIGHLPKAEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LARE GL    K DS  ICF+ +  + + + R  A  A  G+I    G  +G H G+  
Sbjct: 177 RLAREAGLPTHAKKDSTGICFIGERDFREFLGRYLA--AQPGEIRDPQGVRIGTHPGVFY 234

Query: 262 YTIGQRRGLGVA--MGEPLFVVYL--------------DKNSSRVIVGPRESLEVHRIYL 305
           +T+GQR GL +    G P    Y+              D++S  ++ G  E+  +H +  
Sbjct: 235 FTLGQREGLAIGGVRGRPAAPWYVVGKDVAGNILYVDQDRDSPWLMAGTVETEAMHWV-- 292

Query: 306 REINWLGDGLFEDA-VVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
                      E A     F C  ++R  Q   P  V+  DDG   V F + +     GQ
Sbjct: 293 -----------EGAPPATEFDCTAQVRYRQQDEPCRVRVRDDGTLSVRFVRPQRAATPGQ 341

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           + V Y         LGG +I+ +
Sbjct: 342 SLVLYDGPV----CLGGAVIAST 360


>gi|225077158|ref|ZP_03720357.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens
           NRL30031/H210]
 gi|224951506|gb|EEG32715.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens
           NRL30031/H210]
          Length = 367

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 24/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GAD +A
Sbjct: 67  IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG+++K  VR 
Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGELEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++G H G++ Y
Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y + +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTQSLIMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P       +D+ + + F++ +  V  GQ+ V Y  D      
Sbjct: 296 RPTEGRYTCKTRYRMADAPC-TLRYLDDENIELVFDEPQWAVTPGQSAVLYDGDV----C 350

Query: 378 LGGGIISGSKR 388
           LGGGII  + +
Sbjct: 351 LGGGIIMSTDK 361


>gi|240117158|ref|ZP_04731220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID1]
 gi|268602848|ref|ZP_06137015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID1]
 gi|268586979|gb|EEZ51655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID1]
          Length = 383

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 188/382 (49%), Gaps = 24/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGG I  + +
Sbjct: 360 LYDVDI----CLGGGGIQTTDK 377


>gi|304389966|ref|ZP_07371923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326859|gb|EFL94100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 409

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 191/400 (47%), Gaps = 39/400 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL + SR  S+   S      + DA RV 
Sbjct: 8   KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  F  +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 68  DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE---------------RDQSYFLFATTQQQL 185
           +ATGHY  +RL+         +   P   E               +DQSY L     + L
Sbjct: 128 VATGHY--ARLWRPGQAGLIPVGVPPTVTEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 185

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
               FPLGD+  K + R  A  +G+ +A K DS DICF+  G     + R   G AL G 
Sbjct: 186 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GQ 243

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300
           IV  +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V
Sbjct: 244 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 303

Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDG--- 347
             I     +NWL D      G   +  +D     ++ R+   PV    V ++   DG   
Sbjct: 304 TEIQAGPAVNWLTDPTRLGLGATGEGKLDPVGLTIQFRAHGQPVTPQAVHLESGTDGTKL 363

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V +       GVA GQ+ V Y       RV+    I+ +
Sbjct: 364 QVALPPTAGVTGVAPGQSLVLYQDSPQGDRVIAQATITAT 403


>gi|307822309|ref|ZP_07652541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacter tundripaludum SV96]
 gi|307736875|gb|EFO07720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacter tundripaludum SV96]
          Length = 363

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 192/373 (51%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL   G+ V G+ ++ +     +++   C A +D+ DA++VCD
Sbjct: 4   KVIVGMSGGVDSSVTALLLLEQGHQVTGLFMKNWEEDDGTEQ---CTAMEDLADAQQVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            + +     ++   + + V   F S + AG TP P + CN+ VKF   L+     LGA+ 
Sbjct: 61  KLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLNYAIEDLGAEY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       +      + + +D  ++QSYFL+   Q+QL    FP+G + K  +
Sbjct: 121 IATGHYARV-----SEQDCEYFLLKGLDPNKEQSYFLYTLGQKQLSRTLFPIGHLHKPEI 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + G   + K DS  ICF+ + K+ + ++R        G++    GQ +G+H+G++
Sbjct: 176 RAMADKAGFANSRKKDSTGICFIGERKFTEFLQRYLP--TQPGEMRTPQGQHIGKHHGLM 233

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--RESLEVHR-IYLREINWLG 312
            YT+GQR+GLG+     A  EP +V+  D  ++ +IVG      L +H  +   +++W  
Sbjct: 234 YYTLGQRQGLGIGGVKNAPDEPWYVLEKDLENNILIVGQGHDHPLMLHNTLEASQLDWCS 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +      +    +C  K R  Q D +       +D     F++ +  +  GQ+ VFY  +
Sbjct: 294 N----RPLTKTIRCTAKTRYRQADQLCSLEPIGNDRCKAVFDQPQRAITPGQSVVFYDGE 349

Query: 372 SNEARVLGGGIIS 384
                 LGGGII 
Sbjct: 350 I----CLGGGIIE 358


>gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
           R551-3]
 gi|229487423|sp|B4SIN4|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas maltophilia R551-3]
          Length = 380

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 190/393 (48%), Gaps = 32/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A  L + G  V G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGECRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 61  LLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V   G  + ++ R  D  +DQSYFL    QQQL    FP+GD++K  +R
Sbjct: 121 ATGHYAR----VAQRGH-QWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKTDLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGII 260
            +AR++ L    K DS  ICF+ +  + + + R     A  G I+   +G ++  H G+ 
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEV--HRIYLREINWLG 312
            +T+GQR GL +         P +VV  D  S+ + V   R+S  +  +R+     +W+ 
Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSTWMLSNRLRSETAHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      F+C  + R  Q   P  V+  DDG V V F + +  V  GQ+ V Y  D
Sbjct: 294 GA----PPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                 LGG +I+    +DA  E  L      F
Sbjct: 350 V----CLGGAVIAA---TDAPLEQRLRTTPSPF 375


>gi|325299477|ref|YP_004259394.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
 gi|324319030|gb|ADY36921.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
          Length = 356

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 185/373 (49%), Gaps = 34/373 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DA 76
           KD RV++ MSGG DSSV A LL+  GY+V GVT + Y              G   Y  DA
Sbjct: 5   KDKRVLLGMSGGTDSSVAAILLQDAGYEVTGVTFRFYEKE-----------GDTAYLDDA 53

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +C  +++ H V+D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  + 
Sbjct: 54  RELCSRLHIPHIVYDVREVFRKHIITYFIDEYLKGRTPVPCTLCNNRLKWPLLKRLADER 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               +A+GHY++ R ++G+    R  + +  D ++DQS+FL+   Q  +  +  PLG++ 
Sbjct: 114 EIPFIASGHYVQKR-FIGE----RWHIVQGADPDKDQSFFLWGLPQDIIARMVLPLGNLT 168

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILG 254
           K  VR++A E G L +A K DS  +CF   G Y   ++R   AG  + G I       +G
Sbjct: 169 KTRVREIASERGFLKVASKRDSLGVCFC-PGDYRTYLRRHTQAGAIVPGPIFDERRNYMG 227

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG-PRESLEVHRIYLREINWLGD 313
            H G   YTIGQRRGLGV   + LFV  +    + VI+     +LE    YL   +W   
Sbjct: 228 THEGYPFYTIGQRRGLGVYRNKALFVKEIIPEENAVILADDLRALEHTAFYLS--HW--- 282

Query: 314 GLFEDAVVDGFKC--FVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            L    VV G +    VKIR   Q      V   D+ + V   +    +A GQA  FY  
Sbjct: 283 HLPAPEVVLGSQAELIVKIRYRKQANRCSVVLTPDNRLQVRLHEPLASIACGQAAAFYRG 342

Query: 371 DSNEARVLGGGII 383
           D     VLGGGII
Sbjct: 343 DI----VLGGGII 351


>gi|86133287|ref|ZP_01051869.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Polaribacter sp. MED152]
 gi|85820150|gb|EAQ41297.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Polaribacter sp. MED152]
          Length = 395

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 199/400 (49%), Gaps = 44/400 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVTAHLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V D  E+++  ++    + Y  G TP P V CNR +KF   + +  +LGAD +
Sbjct: 62  KLGIPFQVVDLSEQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIALKLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    + DD    +++    D  +DQSYFL   +QQQL    FP+G++ K  VR
Sbjct: 122 ATGHYCRKAEEIIDDKPVYKLLAGK-DNNKDQSYFLCQLSQQQLAKALFPIGELTKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV---------QQ-------------GKYFDVVKRINAGI 239
           ++A+E  L  A+K DSQ +CF+         QQ               + D +K      
Sbjct: 181 EIAKEADLITAEKKDSQGLCFIGKVRLPEFLQQKLQPKKGDIVTIPSDFSDYIKEQPKFE 240

Query: 240 ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
           + E ++ +L         +G+++G H G   +T GQR+GL V    E L+V+  D   + 
Sbjct: 241 SKEEELKYLSTKFTYNKTDGKVVGIHQGAHYFTKGQRKGLNVGGTKEALYVIETDVEENV 300

Query: 290 VIVGP-RESLEVHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           +  G  ++   ++R  L     EI+W+ + L      +  +   +IR  Q      + + 
Sbjct: 301 IYTGEGKQHPGLYRNVLFVANEEIHWIREDLTLKP-SETMQVEARIRYRQVLEQATLYKV 359

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           D G+YV+FE  +  +  GQ   +Y ++     +LG G+IS
Sbjct: 360 DSGLYVEFENKQSAIQEGQFVAWYKNE----ELLGSGVIS 395


>gi|323128291|gb|ADX25588.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 373

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 196/377 (51%), Gaps = 25/377 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 6   NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +    +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQVKR--DEDGTVH--MLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G+
Sbjct: 179 VRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEHAGL 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +++ 
Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVVHFT 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            + + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +
Sbjct: 297 RE-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFYDGE 352

Query: 372 SNEARVLGGGIISGSKR 388
                 LGGG+I  + R
Sbjct: 353 ----ECLGGGMIDMAYR 365


>gi|251783539|ref|YP_002997844.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392171|dbj|BAH82630.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 379

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 196/377 (51%), Gaps = 25/377 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 12  NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 69  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 128

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +    +DG     M R  D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 129 YVATGHYAQVKR--DEDGTVH--MLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 184

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G+
Sbjct: 185 VRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEHAGL 242

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +++ 
Sbjct: 243 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVVHFT 302

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            + + E+  ++   C  K R  Q    V V    D   V F + +  +  GQA VFY  +
Sbjct: 303 RE-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFYDGE 358

Query: 372 SNEARVLGGGIISGSKR 388
                 LGGG+I  + R
Sbjct: 359 ----ECLGGGMIDMAYR 371


>gi|206896038|ref|YP_002247576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738655|gb|ACI17733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 347

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 183/370 (49%), Gaps = 26/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGG+DS+V    LK +G+ V  V L +    +  ++  +CC+      A+RV 
Sbjct: 1   MKIAVGLSGGIDSTVSLLRLKEEGHHVTAVFLNMLPEGEYQEK--TCCSVDSQLLAKRVA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               V   V+D  E F+  VI  F +    G TP PCV CNR VK    + +  Q G D 
Sbjct: 59  MNQGVPFEVWDLTETFQKHVINIFKAMVKKGLTPNPCVFCNRCVKIGAFVELAMQKGFDA 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     +G     + + +D  +DQSY L    +Q L  + FPLG++ +E V
Sbjct: 119 VATGHYARQR-----EGN----LYKAIDSWKDQSYMLALVEKQVLAKVLFPLGELTREEV 169

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
              A   G+    +S SQDICF+  G     + +  + +   G I+   G I+G H G  
Sbjct: 170 ISYAHSHGIKHVPRS-SQDICFMPHGGMEQFITQNISEVTKPGPII-FRGHIIGEHRGYP 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLGVA  EPL+V  +D  S+ V VG  E L    + +  +N         A+
Sbjct: 228 YYTVGQRRGLGVAHREPLYVKKIDPISNTVHVGTSEELFSEHMTVVMMNQF------SAL 281

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +  +KIR     VP FV+++++ +  V F +    +  GQ  V Y  D    +V  
Sbjct: 282 TRQVE--IKIRYRAHSVPAFVEQSNEPILSVRFSQPVRAITPGQIAVAYEGD----KVQW 335

Query: 380 GGIISGSKRS 389
            GII  ++ +
Sbjct: 336 AGIILNARTT 345


>gi|146300143|ref|YP_001194734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacterium johnsoniae UW101]
 gi|205816863|sp|A5FHA9|MNMA_FLAJO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146154561|gb|ABQ05415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacterium johnsoniae UW101]
          Length = 395

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 203/403 (50%), Gaps = 50/403 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLQQQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDLSEEYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121

Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY  +S + V  DGK    +    D+ +DQSYFL   +Q+QL    FP+G + K  V
Sbjct: 122 ATGHYCQKSEIEV--DGKTVYQLIAGNDVNKDQSYFLCQLSQEQLSKALFPIGALTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFV---------------QQGKYFDVVK-------RINAG 238
           R++A EM L  A+K DSQ +CF+               ++G    + K          AG
Sbjct: 180 REIAAEMELVTAEKKDSQGLCFIGKVRLPEFLQQKLQPKEGTIVQIDKNDPIYNVEKQAG 239

Query: 239 IALEGDI----VHLN-----GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288
           ++LE ++      LN     G+++G+H G   +T+GQR+GL V    +PLFV+  D +++
Sbjct: 240 LSLEEELKIESQKLNYRPEMGKVMGKHQGAHYFTVGQRKGLNVGGTTDPLFVIATDVDTN 299

Query: 289 RVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFV 341
            +  G     P    +   +   E++W+ + L    + +G   +   +IR  Q      +
Sbjct: 300 TIYTGLTSNHPGLFKKALFVGNSEVHWVREDL---KLKEGEQMEVMARIRYRQPLQKATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +  +G+YV F++ +  +  GQ   +Y     E  ++G G+IS
Sbjct: 357 HQFANGMYVHFDEPQSAITEGQFVAWYL----ENELVGSGVIS 395


>gi|255690530|ref|ZP_05414205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260623984|gb|EEX46855.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 361

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLDC 109

Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           D +ATGHY R       +Y+  GDD K            +DQSYFL+   Q  L    FP
Sbjct: 110 DWIATGHYSRLEEKNGHIYIIAGDDDK------------KDQSYFLWRLGQDVLRRCIFP 157

Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247
           LG   K  VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+
Sbjct: 158 LGAYTKIKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +    
Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTDYMLAE- 275

Query: 308 INWLGDGLFEDAVVDG---FKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
                    +D +VD    F+C    V+IR    P+   V+R +DG + V F ++   +A
Sbjct: 276 ---------QDKIVDEQELFQCENLTVRIRYRSRPLACRVRRLEDGRLLVRFLETASAIA 326

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ+ VFY       RVLGG  I+  +
Sbjct: 327 PGQSAVFYDG----KRVLGGAFIASQR 349


>gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans]
 gi|205816908|sp|A4G213|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 372

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 189/384 (49%), Gaps = 31/384 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C   QD  DA  V D
Sbjct: 5   RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     ++   +++ V   F   Y AG TP P V CN  +KF   L     LGAD++
Sbjct: 62  VVGVDIEAVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAMLLGADMI 121

Query: 142 ATGHYIRSR-LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R R +  G D  + +++ + +D  +DQSYFL    Q QL    FPLG+++K  V
Sbjct: 122 ATGHYARVREVTSGPDAGQVQLL-KAVDASKDQSYFLHRLNQAQLSKTLFPLGEIRKTEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++ L  A K DS  ICF+ +  + + + R  +     G +   +G I+G H G+ 
Sbjct: 181 RKIAEQLQLPNASKKDSTGICFIGERPFREFLNRYLS--YQPGPMKTPDGTIVGEHVGLS 238

Query: 261 NYTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLRE 307
            YT+GQR+G+G+              P +V   D  N++  IV   +   L    +   +
Sbjct: 239 FYTLGQRKGIGLGGMKTHKNTDGNSGPWYVARKDVANNTLYIVQGHDHPWLLSSALSAGQ 298

Query: 308 INWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+ G    E+ V        K R  Q  V        D + + F+  +  V  GQ+ V
Sbjct: 299 MSWVAGRAPSEELVA------AKTRYRQADVACSQHATADNLALAFDTPQWAVTPGQSAV 352

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
            Y  D      LGGGII+ S  ++
Sbjct: 353 LYQGDV----CLGGGIITASTLTE 372


>gi|224023564|ref|ZP_03641930.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM
           18228]
 gi|224016786|gb|EEF74798.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM
           18228]
          Length = 378

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 186/371 (50%), Gaps = 20/371 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RV+V MSGG+DSS V  +L+  GY+V+GVT++ ++        G      +V +A+ 
Sbjct: 5   KDKRVLVGMSGGIDSSAVCIMLQEQGYEVVGVTMRTWDVPSHFSTPGQE-QPDEVLEAQA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H+V D  E FR  ++  F   Y  G TP PCV CN   K   L     +   
Sbjct: 64  LAARLGIEHHVADVREEFRQVIVKYFIDEYMRGRTPNPCVMCNPLFKERILCEWADRTDC 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY +      +D    R +    D  +DQSYFL+   Q+ L  + FPLG M K+
Sbjct: 124 AWIATGHYCQL-----EDRNGYRYILTGDDPTKDQSYFLWKLPQEILRRMIFPLGGMTKQ 178

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQIL 253
            VR    E G +  A   +S +ICF+ +  Y D ++     I+  I   G  V   G  L
Sbjct: 179 EVRAYLAEKGFEAKARGGESMEICFIDK-DYRDFLREHCPDIDERIG-PGWFVDSKGLKL 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+H G   YTIGQRRGL +A+G+P +V+ ++   + V++G  E L    + + ++N    
Sbjct: 237 GQHKGFAYYTIGQRRGLDIALGKPAYVLKINPAKNTVMLGDAEQLNAEYMLVEDVN--VA 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            L E          ++ RS   P  V +  +D+ + V FE     +  GQ+ VFY  D N
Sbjct: 295 NLEELLTCPSLSVRIRYRSRAIPCRV-ITLDDNRLLVKFEGPASAITPGQSAVFY--DGN 351

Query: 374 EARVLGGGIIS 384
             RVLGGG I+
Sbjct: 352 --RVLGGGFIA 360


>gi|21911376|ref|NP_665644.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS315]
 gi|28896748|ref|NP_803098.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes SSI-1]
 gi|25091447|sp|Q8K5H5|MNMA_STRP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21905592|gb|AAM80447.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus
           pyogenes MGAS315]
 gi|28812002|dbj|BAC64931.1| putative tRNA-(5-methylaminomethyl-2- thiouridylate) [Streptococcus
           pyogenes SSI-1]
          Length = 373

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 191/369 (51%), Gaps = 25/369 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D 
Sbjct: 9   VVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWHD---TDEFGVCTATEDYKDVAAVADQ 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +A
Sbjct: 66  IGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVA 125

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR+
Sbjct: 126 TGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEVRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++ Y
Sbjct: 182 IAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLMYY 239

Query: 263 TIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           TIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  + 
Sbjct: 240 TIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTREM 299

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY  D  E
Sbjct: 300 PEEFT----FECTAKFRYRQPDSHVRVHVRGDKAEVVFAEPQRAITPGQAVVFY--DGKE 353

Query: 375 ARVLGGGII 383
              LGGG+I
Sbjct: 354 C--LGGGMI 360


>gi|308389689|gb|ADO32009.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Neisseria meningitidis alpha710]
          Length = 367

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 190/382 (49%), Gaps = 26/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 344 LYEGDV----CLGGGIIQSTDK 361


>gi|241758623|ref|ZP_04756737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria flavescens SK114]
 gi|241321134|gb|EER57330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria flavescens SK114]
          Length = 367

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 184/367 (50%), Gaps = 16/367 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GAD +A
Sbjct: 67  IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG+++K  VR 
Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGELEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++G H G++ Y
Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           T+GQR+GLG+   GEP FV   D   + +IV       +       +N L   L E    
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLSFTLPERPKE 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             + C  + R +  P       +D+ V + F++ +  V  GQ+ V Y  D      LGGG
Sbjct: 300 GRYTCKTRYRMADAPC-TLRYLDDETVELVFDEPQWAVTPGQSAVLYDGDV----CLGGG 354

Query: 382 IISGSKR 388
           II  + +
Sbjct: 355 IIMSTDK 361


>gi|34557952|ref|NP_907767.1| tRNA-specific 2-thiouridylase MnmA [Wolinella succinogenes DSM
           1740]
 gi|81653445|sp|Q7M8I9|MNMA_WOLSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|34483670|emb|CAE10667.1| TRNA METHYLTRANSFERASE [Wolinella succinogenes]
          Length = 345

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 43/372 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V + MSGG+DSS  A LL+  G++V+G+ L+L+++             Q++ +  +V 
Sbjct: 1   MKVALLMSGGIDSSYSAYLLQEAGHEVVGIYLKLHDN--------DLKHAQNIQNIEKVS 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  ++FD +E F+  V   F  SY  G TP PC  CN  +KF   L    +LG + 
Sbjct: 53  QKLGIETHIFDAKELFKKHVYDYFVDSYQKGLTPNPCAFCNPFMKFGFALERALELGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R         K  RI     D  +DQSYFLF   +  +  L FPLGD  K  +
Sbjct: 113 IATGHYARV--------KEGRIQ-EAKDQSKDQSYFLFGLKESVISRLIFPLGDRLKSEI 163

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  A E    +G  +    +SQ+ICFV +  Y D+++R +  +  +G +   +G+++G H
Sbjct: 164 KPEALEILPWLG-TLESYKESQEICFV-ESDYIDILRR-HFPVEQKGIVQDSSGRVVGEH 220

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    +P +V+ +D   +R+IVG +E L  + +Y           
Sbjct: 221 KGYMQYTIGKRKGFTVKGAHDPHYVLSIDPKENRLIVGSKEELAKNVVYADPF------- 273

Query: 316 FEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSD 371
              A+ +GF+ F   VKIR     V   V+ ++ G  V   K +V GVA+GQA V Y  D
Sbjct: 274 ---ALPEGFEHFEGEVKIRYRSLKVKAEVRLDESGRLVAHLKEKVYGVANGQALVLYAED 330

Query: 372 SNEARVLGGGII 383
                V+GGG I
Sbjct: 331 ----LVIGGGWI 338


>gi|329964462|ref|ZP_08301516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328524862|gb|EGF51914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 357

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 28/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++ MSGG DSSV A  L+  GY+V GVT + Y    A+           + DAR +  
Sbjct: 13  RVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGATNY---------LDDARSLAS 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H  +D  E FR+ +I  F   Y AG TP+PC  CN  +K++ L  +  + G   +
Sbjct: 64  RLGIEHVTYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWALLAKIADEKGIYWV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY+R  L  G     +  M   +D ++DQ++FL+   Q  +  +  P+GD+ K   R
Sbjct: 124 STGHYVRKVLQGG-----KYYMAPAVDKDKDQTFFLWGLKQDIMRRMLLPMGDITKVEAR 178

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258
             A+  G  ++A K DS  +CF     Y   ++R      L  +G  +  NG+ LG H G
Sbjct: 179 AFAKARGFHEVATKKDSIGVCFCPL-DYRSFLQREADVRRLPGKGKFIDENGRFLGWHEG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ M + +FV  +    + V++ P  SL    ++L+  N     L ED
Sbjct: 238 YPFYTIGQRRGLGIQMNKAVFVKEISVEKNEVVLAPLSSLYKQEMWLKAWN-----LVED 292

Query: 319 A-VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + V    +  VKIR  +      V     G ++V   +    +A+GQA  FY  D     
Sbjct: 293 SRVFCAEEVIVKIRYRKQSNRCRVTLTAGGLLHVRLIEPLESIATGQAAAFYAKD---GL 349

Query: 377 VLGGGII 383
           +LGGGII
Sbjct: 350 LLGGGII 356


>gi|254880932|ref|ZP_05253642.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA]
 gi|294775009|ref|ZP_06740538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|319639940|ref|ZP_07994667.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A]
 gi|254833725|gb|EET14034.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA]
 gi|294451053|gb|EFG19524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|317388218|gb|EFV69070.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A]
          Length = 375

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 189/386 (48%), Gaps = 40/386 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + + + + H+V D  E F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  RALAERLGIEHHVADVREEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++TGHY R      +LY+  GDD              +DQSYFL+   Q+ L    
Sbjct: 121 NCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFL 168

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K+ VR+  R+ G +  A   +S +ICF+ +G Y + ++     I  +   G  
Sbjct: 169 FPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWF 227

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + +
Sbjct: 228 VNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLV 287

Query: 306 REINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
            + +          + D  +C    V+IR    P+P  V   D+  + V F      +A 
Sbjct: 288 EDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAP 340

Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387
           GQ+ VFY       RVLGG  I+  +
Sbjct: 341 GQSAVFYEG----KRVLGGAFIASQR 362


>gi|319637829|ref|ZP_07992595.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102]
 gi|317400984|gb|EFV81639.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102]
          Length = 367

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 184/367 (50%), Gaps = 16/367 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GAD +A
Sbjct: 67  IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG+++K  VR 
Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGELEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++G H G++ Y
Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           T+GQR+GLG+   GEP FV   D   + +IV       +       +N L   L E    
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLSFTLPERPKE 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             + C  + R +  P       +D+ + + F++ +  V  GQ+ V Y  D      LGGG
Sbjct: 300 GRYTCKTRYRMADAPC-TLRYLDDETIELVFDEPQWAVTPGQSAVLYDGDV----CLGGG 354

Query: 382 IISGSKR 388
           II  + +
Sbjct: 355 IIMSTDK 361


>gi|329946338|ref|ZP_08293905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527314|gb|EGF54312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 387

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 195/387 (50%), Gaps = 27/387 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G++V+GV + L  +R  + R GS  CC+ +D  DAR 
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRSQT-RSGSRGCCSIEDSADARW 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +  YV+D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG 
Sbjct: 60  AAQILGIPFYVWDLSEEFEERVVADFLDEYRAGRTPNPCVRCNERVKFDALLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           D +ATGHY  +RL  G    R        + R +D  +DQSY L  + ++ L     PLG
Sbjct: 120 DAVATGHY--ARLSGGAASGRPGDTNGLTLRRAVDAAKDQSYVLAVSGREGLARALLPLG 177

Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           D   K  VR  A   GL +A K DS DICFV  G     + R     A EG +V  +G++
Sbjct: 178 DASSKAQVRAEAEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--ASEGAMVSPDGEV 235

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHR------ 302
           LG H G   +T+GQR+GLG++     G P +V+     ++ V+VGP E L          
Sbjct: 236 LGTHQGYFGFTVGQRKGLGLSRPADDGRPRYVIETRPATNEVVVGPEELLSRTTVDGDGL 295

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--GVA 360
           + L E   L  G  +   V   +  V++R+   PV   V+ ++    +  E +    GVA
Sbjct: 296 VLLAEPEPL-TGDSDTPTVGWQEGSVQVRAHGRPVSARVRVDEAAGLLRAELATPLRGVA 354

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
           +GQ+ V Y   +N  +VL    ++ ++
Sbjct: 355 AGQSLVVY-GGTNGDQVLAQATVTSAQ 380


>gi|113869080|ref|YP_727569.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia eutropha H16]
 gi|123133633|sp|Q0K720|MNMA_RALEH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113527856|emb|CAJ94201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia eutropha H16]
          Length = 361

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 182/371 (49%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V D
Sbjct: 7   RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVVSVAD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 64  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 124 ATGHYARVR----QNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G +    G+++G H G+  
Sbjct: 180 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGLAF 237

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L    +   +++W   
Sbjct: 238 YTLGQRKGIGLGGSREGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLTASDLSW--- 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
            +  +    G     K R  Q      VQ  D D + + F +++  V  GQ+ V Y  D 
Sbjct: 295 -VAGEPPAAGAAMAAKTRYRQSDAACTVQAVDGDALTLRFAEAQWAVTPGQSAVLYDGDI 353

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 354 ----CLGGGII 360


>gi|256830660|ref|YP_003159388.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579836|gb|ACU90972.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 347

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 178/364 (48%), Gaps = 28/364 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +  +A+SGG DS +   LL+  G +V+ V  +   +   +  +              +C 
Sbjct: 3   KTAIALSGGADSLMSLLLLRETGAEVMAVHARFLGADDEALHE----------RLHGLCA 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  ++ D    F   VI PF  +Y +G TP PC  CN  +KF  LL   R+LGAD L
Sbjct: 53  KLRVPFHLVDLRREFEELVIAPFVRAYQSGLTPNPCATCNPAIKFGLLLDRVRELGADRL 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +RL     G     + R +D ++DQSYFL    +++   + FPL D  K +VR
Sbjct: 113 ATGHY--ARLARTPHGA---ALYRGLDADKDQSYFLSRVPRERFEQVIFPLADWTKSAVR 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
               E GL      +SQ++CF+    Y D ++  N  +   G I   +G +LGRH G+ N
Sbjct: 168 QALAERGLTPPAGRESQEVCFIPS-DYRDFLRERNVRLGGPGPITLADGTVLGRHAGLWN 226

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVH-RIYLREINWLGDGLFEDA 319
           +T+GQR+GLG+A  +PL+V   D   +R++VGP+ E+L    R  +  + W  + L+   
Sbjct: 227 HTLGQRKGLGIAYSQPLYVTGKDFVQNRLLVGPKSETLSSGCRTGIPNLLWPPE-LWPGE 285

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           ++       +    Q P P  V  +  G+ + F +       GQ    Y   S E +VL 
Sbjct: 286 IL------AQTIYRQRPEPARVSVDQTGMTITFPEPRPMPTPGQVAAVY---SAEGQVLA 336

Query: 380 GGII 383
           G +I
Sbjct: 337 GAVI 340


>gi|71893779|ref|YP_279225.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae J]
 gi|123645587|sp|Q4A9Q7|MNMA_MYCHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822182|sp|Q600M2|MNMA_MYCH2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71851906|gb|AAZ44514.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma hyopneumoniae J]
 gi|312601389|gb|ADQ90644.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyopneumoniae 168]
          Length = 372

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 38/368 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--------RKASKRKGSCCAGQDV 73
           ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S        +K  K    C   QD 
Sbjct: 3   KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  +  D+ + + + V       Y +G TP P + CN+ +KF   L   
Sbjct: 63  LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122

Query: 134 RQL-GADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +++  AD +A GHY ++    LY G D              +DQSYFL   ++ QL    
Sbjct: 123 QKVHNADFIAMGHYAKTDNGNLYAGADS------------LKDQSYFLGQLSKSQLQKTI 170

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG++ K  VR +A E+GL  A K DS  ICF+ + K+ D ++  N   A  G+I+ ++
Sbjct: 171 FPLGNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQ--NYIPAQPGNIIDIS 228

Query: 250 G-QILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
             ++LG+H GI+ +TIGQR+G G++ M EP FVV  +     + V P   ++ LE   + 
Sbjct: 229 TKKVLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLM 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            +  N+L +       +D      K R  Q+ +P+ +++  D+  ++ ++K +  +  GQ
Sbjct: 289 AKNANFLSENFRN---LDNLSA--KFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQ 342

Query: 364 ACVFYTSD 371
             V Y  +
Sbjct: 343 QVVIYHQN 350


>gi|237753391|ref|ZP_04583871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229375658|gb|EEO25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 347

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 36/371 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSS  A LL++ GY V GV L+L++  +             V +  +   
Sbjct: 3   KVLLLMSGGVDSSYCAYLLQKQGYLVYGVYLKLHDKEEKH--------AYFVRNIEKCAK 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ + + D  E F+  V   F  SY  G TP PC  CN  VKF     +  ++G D +
Sbjct: 55  HLNIEYSIIDERELFKEKVYDYFVESYKKGLTPNPCAMCNPFVKFGIAFDLADKMGFDYV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + +     DGK    + +  D+ +DQSYFLF   Q+ +  + FPLGD  KE ++
Sbjct: 115 ATGHYAQIK-----DGK----VAQGADIHKDQSYFLFGLKQEWISRIIFPLGDKIKEEIK 165

Query: 202 DLA-REMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +A +E+     +    DSQ+ICFV+   Y DV+ + +     +G+++   G ++G H G
Sbjct: 166 PIALKELSWLGTLETYKDSQEICFVENS-YIDVLNK-HYKTESKGNVLDAQGNVIGTHKG 223

Query: 259 IINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLF 316
            + YTIG+R+G  +     P +V+ ++   + ++VG +E+L    +  R  N+ L    F
Sbjct: 224 YMQYTIGKRKGFEIKGALTPHYVLKINPQDNTIVVGNKEALATKEV--RATNFSLPKEYF 281

Query: 317 EDAVVDGFKCFVKIR----SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +D   +  +C VKIR     ++  + +  +   + +    ++   GVASGQA V Y    
Sbjct: 282 KDN--NTLECEVKIRYKSHKAKARIELIKEAQKEVIVAHLQEPVYGVASGQALVLYDG-- 337

Query: 373 NEARVLGGGII 383
             ++VLGGG I
Sbjct: 338 --SKVLGGGFI 346


>gi|254283074|ref|ZP_04958042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR51-B]
 gi|219679277|gb|EED35626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR51-B]
          Length = 363

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 189/375 (50%), Gaps = 26/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDSSV A LL+  GY V G+ ++ +     ++    C A +D+ DA  V
Sbjct: 6   NTKVIVGMSGGVDSSVSALLLRDAGYRVEGLFMKNWEEDDGTEY---CTAKEDLADASSV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +  ++   + + V   F S Y AG TP P + CNR +KF   +     LGAD
Sbjct: 63  ADRLGIPLHEANFAAEYWDNVFEHFLSEYRAGRTPNPDILCNREIKFRAFIDYATLLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R   +     + +  + + +D  +DQSYFL      +L    FP+G++ K  
Sbjct: 123 CIATGHYVRRGHF-----ESKATLLKGLDTNKDQSYFLHQVGNVELGRTLFPVGEIDKPR 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E  L  A K DS  ICF+ + ++ D +++     A  G+I  L+G+ +G+H G+
Sbjct: 178 VRQLAEENQLVTAKKKDSTGICFIGERRFKDFLRQYLP--AQPGNIEDLDGRTIGQHIGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREINWL 311
           + +TIGQR+GLG+         P +VV   LD+N   V  G    +L   R+   +I W+
Sbjct: 236 MYHTIGQRQGLGIGGLADHDEAPWYVVGKDLDRNVLLVAQGNDHPALFSSRLLTGDIFWI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +      +   KIR  Q      +   D G  V F+  +  V  GQ+ VFY  +
Sbjct: 296 SG----EPPAPSVQLSAKIRYRQPDQDCHLVAIDGGFEVVFDTPQRAVTPGQSVVFYDGE 351

Query: 372 SNEARVLGGGIISGS 386
                 LGGG+I  S
Sbjct: 352 C----CLGGGVIEDS 362


>gi|292492808|ref|YP_003528247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
 gi|291581403|gb|ADE15860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
          Length = 367

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 186/372 (50%), Gaps = 27/372 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A  L+  GY + G+ ++ +        +  C   QD  DA  V  
Sbjct: 5   KVVVGLSGGVDSSVAALQLQHQGYPISGLFMKNWVD---FADESECTIAQDREDAHAVTS 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L+   +LG  ++
Sbjct: 62  LLGISLHEANFAMEYWDQVFRYFLDEYRLGRTPNPDILCNREIKFKAFLNHALELGNPLI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       +G+ R +  R  D  +DQSYFL+   Q+QL    FPLG+++K  VR
Sbjct: 122 ATGHYARIEQ---KEGRYRLLKGR--DKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A    L   +K DS  ICF+ + ++ + + R     A  G++    G+++G+H+G++ 
Sbjct: 177 RIAAGANLPNHNKKDSTGICFIGERRFKEFLGRYLP--AQPGEMRTPQGELIGKHDGLMY 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YT+GQRRGLG+     + G P FVV  D   + + V   G    L+   +   +++W+  
Sbjct: 235 YTLGQRRGLGIGGRKNSNGAPWFVVGKDLPRNTLYVAQGGDHPWLKSQTLEANQLHWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     + C  K R  Q   P  + +  +G + V F+  +  V  GQA VFY  D 
Sbjct: 295 ----QPPSLPYLCAAKTRYRQADQPCTLTKITNGRIKVVFDSPQYAVTPGQAVVFYRRDE 350

Query: 373 NEARVLGGGIIS 384
                LGGG I+
Sbjct: 351 ----CLGGGTIT 358


>gi|54020202|ref|YP_115943.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 232]
 gi|53987375|gb|AAV27576.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma hyopneumoniae 232]
          Length = 387

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 38/368 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--------RKASKRKGSCCAGQDV 73
           ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S        +K  K    C   QD 
Sbjct: 18  KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 77

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  +  D+ + + + V       Y +G TP P + CN+ +KF   L   
Sbjct: 78  LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 137

Query: 134 RQL-GADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +++  AD +A GHY ++    LY G D              +DQSYFL   ++ QL    
Sbjct: 138 QKVHNADFIAMGHYAKTDNGNLYAGADS------------LKDQSYFLGQLSKSQLQKTI 185

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG++ K  VR +A E+GL  A K DS  ICF+ + K+ D ++  N   A  G+I+ ++
Sbjct: 186 FPLGNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQ--NYIPAQPGNIIDIS 243

Query: 250 -GQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
             ++LG+H GI+ +TIGQR+G G++ M EP FVV  +     + V P   ++ LE   + 
Sbjct: 244 TKKVLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLM 303

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            +  N+L +       +D      K R  Q+ +P+ +++  D+  ++ ++K +  +  GQ
Sbjct: 304 AKNANFLSENFRN---LDNLSA--KFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQ 357

Query: 364 ACVFYTSD 371
             V Y  +
Sbjct: 358 QVVIYHQN 365


>gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
           K279a]
 gi|205828975|sp|B2FQX2|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190012202|emb|CAQ45825.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas maltophilia K279a]
          Length = 380

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 189/393 (48%), Gaps = 32/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A  L + G  V G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 61  LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V   G  + ++ R  D  +DQSYFL    Q+QL    FP+GD++K  +R
Sbjct: 121 ATGHYAR----VTQRGH-QWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGII 260
            +AR++ L    K DS  ICF+ +  + + + R     A  G I+   +G ++  H G+ 
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RES--LEVHRIYLREINWLG 312
            +T+GQR GL +         P +VV  D  S+ + V   R+S  +   R+     +W+ 
Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      F+C  + R  Q   P  VQ  DDG V V F + +  V  GQ+ V Y  D
Sbjct: 294 G----SPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                 LGG +I+    +DA  E  L      F
Sbjct: 350 V----CLGGAVIAA---TDAPLEQRLRTTPSPF 375


>gi|325295428|ref|YP_004281942.1| tRNA-specific 2-thiouridylase mnmA [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065876|gb|ADY73883.1| tRNA-specific 2-thiouridylase mnmA [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 350

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 183/366 (50%), Gaps = 32/366 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++  SGG+DS   A LLK   + V  V  ++       K             A     
Sbjct: 3   KVILGFSGGIDSFYTAYLLKEQRFKVFPVYFKVLPDISTEK-------------AEESAS 49

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V D  + FR  VI  F   Y  G TP PC  CN+ +K   L  ++++L AD +
Sbjct: 50  ILGLGLTVIDLSDEFRKKVINHFIEYYKKGLTPNPCAICNKDIKLKYLYELSKELKADFI 109

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY +   +   D  ++ ++ R  D  ++QSYFL    +     L  PLG+  KE V 
Sbjct: 110 STGHYAKVSYF---DKWKKNLILRGKDKRKEQSYFLSLVEKFVFQKLLLPLGNFTKEEVV 166

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A+E+G     +S+SQDICF++ G Y + +++        G  V ++G  +G+H G   
Sbjct: 167 LRAQELGFPF--ESESQDICFIE-GHYVNFLEKFIK--PKPGVFVLIDGTPVGKHKGYYK 221

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG++  +PL+V+ +D   +RVIVG ++ ++   IY++ INW  D      VV
Sbjct: 222 YTVGQRRGLGISYTKPLYVISIDAKRNRVIVGEKKEIQKDIIYVKNINWHLD----YEVV 277

Query: 322 DGFKCF-VKIRSSQDPVPV-FVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVL 378
             F    V+IR    PV V  +    +G++ V         A GQ C FY   SNE  +L
Sbjct: 278 KKFDTIQVQIRYRSKPVEVEKIDYLKNGIFCVKLAAKVDAPAPGQVCAFY---SNEL-LL 333

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 334 GGGEIT 339


>gi|237736558|ref|ZP_04567039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420420|gb|EEO35467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 352

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 189/367 (51%), Gaps = 23/367 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSS+   LL++ GY+VIGVTL   N +K    K      +++  A++V +
Sbjct: 5   KVVLGMSGGVDSSISVYLLQKQGYEVIGVTL---NHKKEESLK------EEIDSAKKVAN 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             N+ H V D E+ F+  V+  F   Y+ G TP PCV C+  VK   L  +  +  A  +
Sbjct: 56  FFNIKHRVIDIEDIFQKEVVNNFLDGYSKGITPSPCVICDERVKMKILFDIADEEKAYYV 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +     ++   + ++ +  D ++DQSY L+     ++  L FPL    K  +R
Sbjct: 116 ATGHYCSTEY---NEEFDKILLKKAKDSKKDQSYMLYRLDSDKISRLLFPLFKYTKNEIR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
           ++   +GL++ +K DSQ ICF + G Y D +KR N G +++ G  +  +G I+G H G  
Sbjct: 173 EIGENIGLEVHNKKDSQGICFAKIG-YIDFLKR-NLGDSIKRGKFIDRDGNIMGEHEGYQ 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL + +    F+  ++   + + +G  + L   R+ L  +++      E  +
Sbjct: 231 LYTIGQRRGLNLKLPRAYFITAINPEKNEITLGEYKELARKRVEL--VDFKSPIELEKII 288

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               K   + R S       V   ++ +Y ++ +  V  A GQ  V Y  D     VLGG
Sbjct: 289 EK--KVIGRPRFSSFGAEGKVIVENEKIYFEYFEENVQNAPGQHLVIYYKDF----VLGG 342

Query: 381 GIISGSK 387
           G+I   K
Sbjct: 343 GMIVDKK 349


>gi|261392212|emb|CAX49726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 8013]
          Length = 367

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 190/382 (49%), Gaps = 26/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 344 LYDGDI----CLGGGIIQSTDK 361


>gi|194290687|ref|YP_002006594.1| tRNA-specific 2-thiouridylase mnma [Cupriavidus taiwanensis LMG
           19424]
 gi|229486340|sp|B3R6Q0|MNMA_CUPTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|193224522|emb|CAQ70533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 361

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 26/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V D
Sbjct: 7   RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVVSVAD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +
Sbjct: 64  LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 124 ATGHYARVR----QNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL  A K DS  ICF+ +  + D + R        G +    G+++G H G+  
Sbjct: 180 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGLAF 237

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT+GQR+G+G+       G+  +V   D   N+  V+ G     L    +   +++W   
Sbjct: 238 YTLGQRKGIGLGGSRDGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLNASDLSW--- 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
            +  +    G     K R  Q      VQ  D D + + F + +  V  GQ+ V Y  D 
Sbjct: 295 -VAGEPPAAGAAMAAKTRYRQSDAACTVQAVDADALSLGFAEPQWAVTPGQSAVLYDGDI 353

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 354 ----CLGGGII 360


>gi|94499665|ref|ZP_01306202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
 gi|94428419|gb|EAT13392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
          Length = 369

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 36/384 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 8   NTKVIVGMSGGVDSSVSAYLLMEQGYHVEGLFMKNWEEDDGTEY---CTAKEDLADAQAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L   + LGAD
Sbjct: 65  CDKLGIKLHSANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAKILGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       DG     + + +D  +DQSYFL A  + ++    FP+G+++K  
Sbjct: 125 YIATGHYVRR---YEKDGS--TYLLKGLDNNKDQSYFLHAVGEDEIKQTLFPVGELEKPE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ + ++ D +K+     A  G I    G+ +GRH G+
Sbjct: 180 VRRIAEEQGLATAKKKDSTGICFIGERRFKDFLKQYIP--AQPGTIKTPEGEEMGRHEGL 237

Query: 260 INYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP--------RESLEVHRIYLR 306
           + YT+GQR+G+G+   +     P +VV  D   + ++VG          +SL+   IY  
Sbjct: 238 MYYTLGQRQGIGIGGSKHHGEAPWYVVGKDLERNELMVGQGKDHPLLFSKSLDCFNIY-- 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W+     E A +   +C  K+R  Q      + + D G ++ F++ +  V  GQ+ V
Sbjct: 296 ---WVNG---EPADLPK-RCKAKVRYRQADQDCTIDKTDSGYHIIFDEPQRAVTPGQSLV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
            Y  +      LGGGII  ++ ++
Sbjct: 349 LYDGEI----CLGGGIIERTQLAE 368


>gi|294339421|emb|CAZ87777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas sp. 3As]
          Length = 368

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 179/376 (47%), Gaps = 24/376 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK+ GY V+G+ ++ +     S+    C   QD  DA  V D 
Sbjct: 9   VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSE---YCSTRQDWLDAASVADR 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++   ++  V   F   YAAG TP P V CN  +KF   L    +LGAD +A
Sbjct: 66  IGIDIEAVNFAAEYKERVFAEFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R    D G     + R +D  +DQSYFL    Q QL    FP+G++ K  VR 
Sbjct: 126 TGHYARVR--ETDHGFE---LLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GL  A K DS  ICF+ +  + D + R        G +    G+ +G H G+  Y
Sbjct: 181 VAETIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGEHLGLAFY 238

Query: 263 TIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDG 314
           T+GQR+G+         GEP FV   D   +++IV        L  H +     +W+  G
Sbjct: 239 TLGQRKGIGLGGSNSGNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWV-SG 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 V G+    + R   D    F  +  +   + F+  +  V  GQ+ V Y  +   
Sbjct: 298 TAPTEEVFGYGAKTRYRQV-DAACRFQDQGPERFTLKFDAPQWAVTPGQSAVLYDGEV-- 354

Query: 375 ARVLGGGIISGSKRSD 390
              LGGGII  + R+D
Sbjct: 355 --CLGGGIIEAASRND 368


>gi|295698406|ref|YP_003603061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Riesia pediculicola USDA]
 gi|291157242|gb|ADD79687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Riesia pediculicola USDA]
          Length = 363

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 196/381 (51%), Gaps = 36/381 (9%)

Query: 16  KNPKDM--RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           KN K+   RVVV MSGGVDSSV A LLK+  Y+V+G+ ++ +          SC   +D+
Sbjct: 2   KNKKNYVARVVVGMSGGVDSSVAALLLKKRNYEVLGLFMKNWEEDDGH----SCSYIEDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D + VC+ + +  Y  ++   + N V   F   Y  G+TP P V CN+ +KF + L  +
Sbjct: 58  KDVKSVCEKLKIQLYQVNFSIEYWNKVFKVFLKKYKTGKTPNPDVLCNKEIKFKEFLDFS 117

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +ATGHY+R +         + I+ +  D  +DQSYFL    Q QL  + FP+
Sbjct: 118 LENLNADYIATGHYVRKK-----KRNEKYILLKAKDERKDQSYFLHLLDQSQLEKVIFPI 172

Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G+ KK  +R +A + G L ++ K DS  ICF+ + ++ + +++  +     GDI+ ++ +
Sbjct: 173 GEFKKSEIRKIAEKNGLLSVSKKKDSTGICFIGKKRFENFLQKYIS--CKNGDILSVHKE 230

Query: 252 ILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRE---SLEVHRI 303
           I+G+H G I YT+GQR+G+ +         P +V+  +   + +++   +   SL    I
Sbjct: 231 IIGQHPGSILYTLGQRKGIRIGGIKNEKHGPWYVIDKNVKQNTIMISQNKFHPSLVSKGI 290

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362
            +  ++W+ +          ++C V+ R  Q      +++   + + V F+   + V  G
Sbjct: 291 IINNVHWISE--------PKYRCSVQTRYHQKETYCSIRKICLNRISVRFDHPILSVTPG 342

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q  VFY  +      LGGG I
Sbjct: 343 QYGVFYDREV----CLGGGEI 359


>gi|168070921|ref|XP_001786986.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660006|gb|EDQ48200.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 257

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/269 (39%), Positives = 152/269 (56%), Gaps = 16/269 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G+C A  D  D RRVC+ I + 
Sbjct: 1   MSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGNCTAEDDAEDVRRVCEQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y  ++E+ + + V   F   Y  G TP P V CNR +KF + L+    LGA  +ATGHY
Sbjct: 58  YYTVNFEKEYYDKVFSYFLDEYKLGRTPNPDVMCNREIKFGEFLTKALNLGAQYVATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R    V  DG     + R +D  +DQ+YFL A  QQQL    FP+G + K  VR +A E
Sbjct: 118 ARV---VEQDG--VYTLLRGVDSNKDQTYFLNALNQQQLSKAMFPIGHLPKPEVRRIAEE 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIG 265
            GL  A K DS  +CF+ +  + + + +     A  G +V +  G++ GRH+G++ YT+G
Sbjct: 173 AGLYTAKKKDSTGVCFIGERNFKEFLSQYLP--AQSGQMVDIATGEVKGRHDGLMYYTLG 230

Query: 266 QRR---GLGVAMGEPLFVVYLDKNSSRVI 291
           QR+     G   GEP FV   DK+  + I
Sbjct: 231 QRQGLGIGGSGSGEPWFVA--DKDLEKNI 257


>gi|242279051|ref|YP_002991180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121945|gb|ACS79641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio salexigens DSM 2638]
          Length = 360

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 172/362 (47%), Gaps = 21/362 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +A+SGG DS +   LLK  G D++ V        KA        AG +     + C 
Sbjct: 18  KVAMAVSGGADSLLSMVLLKESGADIVAVHGCFLGKEKAE----VAVAGLE-----KRCA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            ++VS +VFD    F   V+ PF   Y  G TP PC  CN  +KF  L    ++LG D+L
Sbjct: 69  ELDVSLHVFDLTAEFDRLVVEPFVQEYLRGNTPNPCALCNPEIKFGVLYKAAQELGCDLL 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY+R    + +D +  R++ R  D+ +DQSYFL    +  + +  FPLG   K+   
Sbjct: 129 GTGHYVR----IAEDARYGRVLARGADMGKDQSYFLSLVPRDSVLNAIFPLGGHSKDQTY 184

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
               + G++I   S+SQ+ICFV    Y   +      +   G  V  +G  +G+HNG+  
Sbjct: 185 AELDKRGVEIPLPSESQEICFVPDDDYRQFLIDRKVKLPGPGIAVLSDGTKVGKHNGLWR 244

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT GQRRGLG++   PL+V+  D   + +IVG  + LE         N+L D  FE    
Sbjct: 245 YTQGQRRGLGISWKAPLYVLDKDMKRNLLIVGTSDELEAGGCIADSFNFLID--FERWPE 302

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                +++ R  Q   P    +    +  DF +       GQ    YT    E  VLGGG
Sbjct: 303 ---TVYIQTRYRQRSKPARAVQVGSSIKFDFIEPHSRPTPGQIVAVYT---EEGAVLGGG 356

Query: 382 II 383
           II
Sbjct: 357 II 358


>gi|121596352|ref|YP_988248.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. JS42]
 gi|205811052|sp|A1WD47|MNMA_ACISJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120608432|gb|ABM44172.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax sp. JS42]
          Length = 379

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 188/391 (48%), Gaps = 42/391 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  
Sbjct: 2   KKHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---FCSSRQDFLDAAS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA
Sbjct: 59  VADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R    +       + + +D  +DQSYFL    Q QL    FP+G++ K 
Sbjct: 119 EKIATGHYARVRQ---NPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKT 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ +  + + + R        G I+   G+ LGRH G
Sbjct: 176 EVRRIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQ--HAPGPILDDRGRKLGRHVG 233

Query: 259 IINYTIGQRRGLGVA------------MGEPL---------FVV--YLDKNSSRVIVGPR 295
           +  YT+GQR+GLG+              G+P+         FV    L+ N+ RV+ G  
Sbjct: 234 LSFYTLGQRQGLGIGGVKEKGAGAKAPSGQPVRGAGDHAPWFVARKELETNTLRVVQGHE 293

Query: 296 ES-LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFE 353
              L  HR+  ++ +W+              C  K R   QD     +    D   + F 
Sbjct: 294 HPWLLSHRLDAQDASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFNLQFP 348

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +++  V  GQ+ V Y  +      LGGG+I+
Sbjct: 349 EAQWAVTPGQSAVLYDGEV----CLGGGVIA 375


>gi|261379871|ref|ZP_05984444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria subflava NJ9703]
 gi|284797568|gb|EFC52915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria subflava NJ9703]
          Length = 367

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 188/371 (50%), Gaps = 24/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD +DA  V D 
Sbjct: 10  IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   + ++  ++++ V   F   Y+AG TP P + CN  +KF   L    + GAD +A
Sbjct: 67  IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDILCNAEIKFKCFLDYAIEQGADTIA 126

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG+++K  VR 
Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERSIFPLGELEKPEVRR 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++G H G++ Y
Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239

Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           T+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y + +  N L   L E
Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTQSLVMNDLSFTLPE 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P       +D+ + + F++ +  V  GQ+ V Y  D      
Sbjct: 296 RPKEGRYTCKTRYRMADAPC-TLRYLDDETIELVFDEPQWAVTPGQSAVLYDGDV----C 350

Query: 378 LGGGIISGSKR 388
           LGGGII  + +
Sbjct: 351 LGGGIIMSTDK 361


>gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703]
 gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech703]
          Length = 370

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 199/376 (52%), Gaps = 33/376 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAAADLADAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLCADY 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +    D   + R++ R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 125 IATGHYVRRQ----DIAGKSRLL-RGLDNNKDQSYFLYTLSHEQVAQSLFPVGELEKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+ +G H G+
Sbjct: 180 RRIAEELDLATAKKKDSTGICFIGERKFRDFLARYLP--AQPGAIISVDDGKTMGEHQGL 237

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309
           + +T+GQR+GLG+        +P +VV  DK+ +  I+   +  E  R+       ++++
Sbjct: 238 MYHTLGQRKGLGIGGVRDGGDDPWYVV--DKDVANNILYVAQGHEHPRLMSQGLIAQQLH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+      + +     C VK R  Q  +P       ++ V V FE     V  GQ+ VFY
Sbjct: 296 WVD----REPLSQPQTCTVKTRYRQADIPCTLTPLGEERVEVRFESPVAAVTPGQSAVFY 351

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGGII 
Sbjct: 352 QGEV----CLGGGIIE 363


>gi|15677407|ref|NP_274563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis MC58]
 gi|14195280|sp|Q9JYJ6|MNMA_NEIMB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|7226803|gb|AAF41910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis MC58]
 gi|316983800|gb|EFV62780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis H44/76]
 gi|325199845|gb|ADY95300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis H44/76]
          Length = 367

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 190/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362


>gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
 gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
          Length = 369

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 184/380 (48%), Gaps = 35/380 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C A QD  DA  V D
Sbjct: 5   KVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---FCSARQDWLDAVTVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +   V ++   ++  V   F   Y AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  VIGIDIEVVNFAAEYKERVFSEFLKEYEAGRTPNPDVLCNAEIKFKAFLDHAISLGAERI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R     +      + + +D  +DQSYFL    QQQL    FPLG+++K  VR
Sbjct: 122 ATGHYARVR-----ENNGFFELLKAVDDTKDQSYFLHRLNQQQLSKTIFPLGEIRKTEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
            +A ++GL  A K DS  ICF+ +  +   + R    ++ E G I    G  +G+H G+ 
Sbjct: 177 QIAEKIGLPNAKKKDSTGICFIGERPFRAFLNRY---LSYEPGPIKTPEGDEIGQHVGLS 233

Query: 261 NYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
            YTIGQR+G+G+             +  +V   D +++ + V        L    +   +
Sbjct: 234 FYTIGQRKGIGIGGLKSFRRPDGTSDAWYVARKDTHNNTLYVVQGHDHPWLLSPSLEAGQ 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366
            +W+     ED  +      VK R  Q  VP V     +  +   FEK +  +  GQ+ V
Sbjct: 294 SSWIAGISPEDGELS-----VKTRYRQKDVPCVLNVTGNSELTASFEKPQWAITPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGS 386
           FY  +      LGGGII  S
Sbjct: 349 FYKGNV----CLGGGIIDNS 364


>gi|148244833|ref|YP_001219527.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166235089|sp|A5CW80|MNMA_VESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146326660|dbj|BAF61803.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 362

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 182/373 (48%), Gaps = 27/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +++V +SGGVDSSV A LL + GY V  + ++ +      +    C A QD+ DA+ 
Sbjct: 6   KNTKIIVGLSGGVDSSVTALLLLKQGYQVEALFMKNWEEDDKGRY---CSAKQDLSDAQN 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +++  +  ++   + N V   F   Y  G TP P + CN+ +KF   L     LGA
Sbjct: 63  ITNKLSIKLHTINFSVDYWNDVFTHFLKEYKKGRTPNPDILCNQKIKFGAFLKHAISLGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       +G  +  +   +D  +DQSYFL   +Q QL    FPLG+  K 
Sbjct: 123 DKIATGHYAR---IAKKNGTYQ--LKTGLDNNKDQSYFLHLLSQYQLSKSLFPLGETNKI 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E G   A K DS  ICF+ + K+ + +         +G+IV   GQ +  H G
Sbjct: 178 DVRNIATENGFVTAKKKDSTGICFIGERKFSEFLATYLP--KQQGNIVGEQGQFIKHHQG 235

Query: 259 IINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +  YTIGQR+GL +       G+P FV    +++N   V+ G    L    +   +  W+
Sbjct: 236 LAFYTIGQRKGLEIGGGFGKSGKPWFVADKCIERNELVVVQGDHTLLYYQTLNTSKPYWI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                         C  KIR  Q      + Q N+  + + F++ +  +  GQ+ VFY +
Sbjct: 296 -----NTPPTLPMTCNAKIRYRQQSQSCMISQDNNKQLKIIFKQPQRAITPGQSIVFYDN 350

Query: 371 DSNEARVLGGGII 383
           ++     LGG II
Sbjct: 351 ET----CLGGAII 359


>gi|120436568|ref|YP_862254.1| tRNA methyl transferase [Gramella forsetii KT0803]
 gi|205816859|sp|A0M3J2|MNMA_GRAFK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117578718|emb|CAL67187.1| tRNA methyl transferase [Gramella forsetii KT0803]
          Length = 395

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 199/400 (49%), Gaps = 44/400 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V D
Sbjct: 3   KVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMMVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   +   DG+    +    D  +DQSYFL   TQ+QL    FP+G+++K  VR
Sbjct: 122 ATGHYCRKAEF-EKDGEPIYQLLSGEDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-----------VVKRINAG--IALEGDI--- 245
            +A E  L  A+K DSQ +CF+ + +  D           V+  + AG    LE DI   
Sbjct: 181 KIAAEQNLVTAEKKDSQGLCFIGKVRLPDFLQQKLKSKEGVIVEVPAGNDSYLEEDINFK 240

Query: 246 ------VHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
                  HL         +G+++G+H G   +T GQR+GL V    EPLFV+  D   + 
Sbjct: 241 SKIDQLQHLSKKFNYQLTDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVIENV 300

Query: 290 VIVGP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           +  G  ++   ++R    I   E++W+   L  D+  +  +   +IR  Q      + + 
Sbjct: 301 IYTGQGKDHPGIYRQGLFIAQDEVHWVRRDLAIDS-DEELRIKARIRYRQPLQDATLHQT 359

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           ++G+YV F++ +  +  GQ   +Y +      +LG G+IS
Sbjct: 360 ENGMYVIFDQPQASITEGQFVAWYQN----GELLGSGVIS 395


>gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
          Length = 363

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ GY+V+G+ ++ +     S+    C + QD  DA  V D
Sbjct: 6   RVVVGLSGGVDSAVSAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSSRQDFLDAAAVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L    +LGA+ +
Sbjct: 63  VIGIDLEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLGAERI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + + +D  +DQSYFL    Q QL    FP+G++ K  VR
Sbjct: 123 ATGHYARVRERDG-----RFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGELPKTEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E+GL  A K DS  ICF+ +  + + + R  A     GDI    G+++GRH G+  
Sbjct: 178 RIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLA--QAPGDIEDERGRVVGRHVGLSF 235

Query: 262 YTIGQRRGLGVAMGE-------PLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWL 311
           YT+GQR+GLG+   +       P +V    L++N  RV+ G      + R +   +  W+
Sbjct: 236 YTLGQRQGLGIGGLKSGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAGDCAWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 D  +       K R  Q      ++R+ + V + F + +  V  GQ+ V Y  +
Sbjct: 296 AGTPPADGALA-----AKTRYRQADAACTLRRDGEAVVLSFAEPQWAVTPGQSAVVYDGE 350

Query: 372 SNEARVLGGGIISGSK 387
                 LGGG+I  S+
Sbjct: 351 V----CLGGGVIESSE 362


>gi|72080763|ref|YP_287821.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 7448]
 gi|123644877|sp|Q4A7U1|MNMA_MYCH7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71913887|gb|AAZ53798.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma hyopneumoniae 7448]
          Length = 372

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 38/368 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--------RKASKRKGSCCAGQDV 73
           ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S        +K  K    C   QD 
Sbjct: 3   KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  +  D+ + + + V       Y +G TP P + CN+ +KF   L   
Sbjct: 63  LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122

Query: 134 RQL-GADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +++  AD +A GHY ++    LY G D              +DQSYFL   ++ QL    
Sbjct: 123 QKVHNADFIAMGHYAKTDNGNLYAGADS------------LKDQSYFLGQLSKSQLQKTI 170

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG++ K  VR +A E+GL  A K DS  ICF+ + K+ D ++  N   A  G+I+ ++
Sbjct: 171 FPLGNLLKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQ--NYIPAQPGNIIDIS 228

Query: 250 G-QILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
             ++LG+H GI+ +TIGQR+G G++ M EP FVV  +     + V P   ++ LE   + 
Sbjct: 229 TKKVLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLM 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
            +  N+L +       +D      K R  Q+ +P+ +++  D+  ++ ++K +  +  GQ
Sbjct: 289 AKNANFLSENFRN---LDNLSA--KFRYRQEAIPIRIEKIQDNSFWISYQKYQ-AITPGQ 342

Query: 364 ACVFYTSD 371
             V Y  +
Sbjct: 343 QVVIYHQN 350


>gi|205822192|sp|A9M0Y5|MNMA_NEIM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 24/380 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI-- 308
           G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +  
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVM 286

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V Y
Sbjct: 287 NDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKR 388
             D      LGGGII  + +
Sbjct: 346 DGDI----CLGGGIIQTTDK 361


>gi|320355316|ref|YP_004196655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123818|gb|ADW19364.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 182/365 (49%), Gaps = 30/365 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V VAMSGGVDS++ A+LL+  G+DV G  + L  +    +R+            R V 
Sbjct: 4   LSVGVAMSGGVDSTMAASLLQEQGHDVHGFFMLLPLANLEVQRQ----------RVREVA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +++     D  + F   VI  F  SY AG TP PC+ CNR+VKF  L    R    + 
Sbjct: 54  DRLSIPLTEVDLRQSFAEQVIGYFNRSYRAGLTPNPCIHCNRSVKFGLLADTMRHQDLER 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  VGD    R  + R  D  +DQSYFL      Q+  L FPLGD  K+ V
Sbjct: 114 IATGHYARVQ-SVGD----RCFVARGSDRTKDQSYFLARLAADQVNTLLFPLGDWTKQQV 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNGI 259
              A  +G   + + +SQD+CF+ QG    + ++   GI  L G +V  +G+ +G H G+
Sbjct: 169 YARAAALGFHFSGE-ESQDVCFLSQGLAAFLSEQ---GIGDLCGPVVTADGRQIGEHRGV 224

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLG+    P +VV LD   +RVIVG ++ L   R  +  + W         
Sbjct: 225 WHYTIGQRRGLGLPDVTPWYVVGLDGPGNRVIVGKQDDLFATRCTVHALRWT-----HQP 279

Query: 320 VVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               ++  V++RS   P +        +   + F+  +  +  GQ  V Y  D    RV+
Sbjct: 280 PALPWRGLVQLRSRHTPAMAALAPSGPEQWSLVFDTPQRAITPGQFAVCYEHD----RVV 335

Query: 379 GGGII 383
           G  +I
Sbjct: 336 GSAVI 340


>gi|254230168|ref|ZP_04923562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
 gi|151937306|gb|EDN56170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
          Length = 341

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 25/330 (7%)

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A +D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 17  CTAAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKF 76

Query: 127 SDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L    + L AD +A GHY+R       D   +  M R +D  +DQSYFL+  + +Q+
Sbjct: 77  KAFLEFADEVLDADYIAMGHYVRRSF---PDNGEKPAMLRGLDGNKDQSYFLYTLSHEQI 133

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD++K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 134 GRSLFPVGDLEKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNI 191

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-R 295
               G+++G+H G++ +T+GQR+GL +          EP FV    L++N    + G   
Sbjct: 192 ETPEGEVIGQHQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDH 251

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEK 354
             L+   +   +++W+      + + D  KC VK R  Q+ +P   +  +D+ + V F++
Sbjct: 252 PMLKSEGLLASQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDE 307

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            ++ V  GQ+ VFY  D      LGGGII 
Sbjct: 308 PQIAVTPGQSAVFYKDDV----CLGGGIIE 333


>gi|300310029|ref|YP_003774121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herbaspirillum seropedicae SmR1]
 gi|300072814|gb|ADJ62213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 184/382 (48%), Gaps = 31/382 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C   +D  DA  V D
Sbjct: 5   RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTREDWIDAVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGAD++
Sbjct: 62  VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGADLI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G  G  +  + + +D  +DQSYFL    Q+QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRQ--GPQGDFQ--LLKALDASKDQSYFLHRLNQEQLSRTVFPLGEIHKTEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++ L  A K DS  ICF+ +  + + + R  +     G I   +GQ +G H G+  
Sbjct: 178 RIAEQLQLPNAKKKDSTGICFIGERPFREFLNRYLS--YKPGPIKTADGQTVGEHVGLSF 235

Query: 262 YTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EI 308
           YT+GQR+G+G+            G+  +V   D +N++  IV   +   +    L   ++
Sbjct: 236 YTLGQRKGIGIGGLKAHQNADGHGDAWYVARKDVENNTLYIVQGHDHPWLLSPTLSAGQV 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           +W+     + A +       K R  Q  VP           + F+  +  V  GQ+ V Y
Sbjct: 296 SWVAGHAPQMAALS-----AKTRYRQADVPCGFSDAGASFSLAFDTPQWAVTPGQSAVLY 350

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D      LGGGII      D
Sbjct: 351 DGDV----CLGGGIIENGALPD 368


>gi|150003843|ref|YP_001298587.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
 gi|205810962|sp|A6KZV1|MNMA3_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|149932267|gb|ABR38965.1| putative tRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
          Length = 375

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 189/386 (48%), Gaps = 40/386 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + + + + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  RALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++TGHY R      +LY+  GDD              +DQSYFL+   Q+ L    
Sbjct: 121 NCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFL 168

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K+ VR+  R+ G +  A   +S +ICF+ +G Y + ++     I  +   G  
Sbjct: 169 FPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWF 227

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + +
Sbjct: 228 VNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLV 287

Query: 306 REINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
            + +          + D  +C    V+IR    P+P  V   D+  + V F      +A 
Sbjct: 288 EDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAP 340

Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387
           GQ+ VFY       RVLGG  I+  +
Sbjct: 341 GQSAVFYEG----KRVLGGAFIASQR 362


>gi|228473347|ref|ZP_04058101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275249|gb|EEK14047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 397

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 198/407 (48%), Gaps = 58/407 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLQKQGYEVIGLFMKNWHDDSVTI-SNECPWLEDSNDALMVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D    ++  ++      Y  G TP P V CNR +KF+  L +   LGAD +
Sbjct: 62  KLGIPFQTVDMSVPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLDLALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +  DGK    +    D  +DQSYFL   +Q+QL    FP+GD++K  VR
Sbjct: 122 ATGHYCRKE-EIEVDGKPIYRLLAGKDTNKDQSYFLCQLSQEQLSRALFPIGDLQKNEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248
            +A+E+GL  A+K DSQ +CFV + +  + +++  +    EGDI+ +             
Sbjct: 181 AIAKELGLVTAEKKDSQGLCFVGKVRLPEFLQQQLS--PKEGDIIQIPSTWAGYHNKQIL 238

Query: 249 ----------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDK 285
                                 +G+I+G+H G   +TIGQR+GL V    EPLFV+  D 
Sbjct: 239 RCFECYEDELKFLAEKYHYTPQDGKIVGKHEGAHFFTIGQRKGLHVGGTAEPLFVIDTDT 298

Query: 286 NSSRVIVGP--------RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDP 336
             + + VG         R +L V +    +I+W+  D         GF+  V+IR  Q  
Sbjct: 299 EKNIIYVGEGNTHPGLLRSALFVKK---EDIHWVRPDLALSLGQRMGFQ--VRIRYRQPL 353

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
               +   + G+Y+ F+  +  + SGQ   +Y  +     ++G G I
Sbjct: 354 QKAHLYLTNSGLYIHFDTPQSAITSGQFASWYLDE----ELIGSGEI 396


>gi|294666592|ref|ZP_06731831.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603612|gb|EFF47024.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 378

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  N+   +   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQTHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q      V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 EE--CLGGAVIAAT 359


>gi|237749060|ref|ZP_04579540.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
 gi|229380422|gb|EEO30513.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
          Length = 367

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 188/382 (49%), Gaps = 35/382 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GY+V+G+ ++ +      +    C A QD  DA  V D
Sbjct: 5   KVVIGMSGGVDSSVSAWLLKEQGYEVVGLFMKNWEDDDDGEY---CSARQDWLDAVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V   V ++   ++  V   F   Y AG TP P V CN  +KF   L     LGA+ +
Sbjct: 62  VIGVDIEVVNFAAEYKERVFSEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAVSLGAEQI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    ++     +M + +D  +DQSYFL    Q+QL    FPLG+++K  VR
Sbjct: 122 ATGHYARVR----ENNGLFELM-KAVDDTKDQSYFLHRLNQKQLSKAIFPLGEIRKTEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
            +A ++GL  A K DS  ICF+ +  +   + R    ++ E G I    G+ +G+H G+ 
Sbjct: 177 KIAEKLGLPNAKKKDSTGICFIGERPFRAFLNRY---LSYEPGPIKTPEGKEIGQHVGLS 233

Query: 261 NYTIGQRRGLGVA----------MGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLRE 307
            YTIGQR+G+G+             +  +V   D   N+  V+ G     L    +   +
Sbjct: 234 FYTIGQRKGIGIGGLKSFKNPDGTSDAWYVARKDIQNNTLYVVQGHDHPWLLSPELIATQ 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
            +W+     E+  +      VK R  Q  V   +  + DD   V+F+  +  V  GQ+ V
Sbjct: 294 SSWIAGFSPENQALS-----VKTRYRQKDVAGTLNVKGDDAFSVNFDAPQWAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
           FY  D      LGGGII  + +
Sbjct: 349 FYKGDV----CLGGGIIDNNSK 366


>gi|121635213|ref|YP_975458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis FAM18]
 gi|166235071|sp|A1KUY0|MNMA_NEIMF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120866919|emb|CAM10679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis FAM18]
 gi|325130624|gb|EGC53368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis OX99.30304]
 gi|325132760|gb|EGC55443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M6190]
 gi|325136777|gb|EGC59377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M0579]
 gi|325138645|gb|EGC61204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ES14902]
 gi|325204520|gb|ADY99973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240355]
          Length = 367

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +     +    V F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362


>gi|329119430|ref|ZP_08248115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464363|gb|EGF10663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 365

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 182/372 (48%), Gaps = 24/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV +SGGVDSSV AALLK+ G+ V GV +Q +      +    C   QD +DA  V D 
Sbjct: 8   IVVGLSGGVDSSVTAALLKQQGHSVRGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GADV+A
Sbjct: 65  IGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYALEQGADVIA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G     R  + + +D  +DQSYFL+     QL    FPLG ++K  VR 
Sbjct: 125 TGHYARKEIIGG-----RHCLLKGLDGNKDQSYFLYRLKPHQLERAVFPLGGLEKPEVRR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA    L  A K DS  ICF+ +  + + +++        G ++   G+ +G H G+  Y
Sbjct: 180 LAEAFKLPTAAKKDSTGICFIGERPFREFLQQYLP--TNPGKMITPEGKTMGEHVGLTFY 237

Query: 263 TIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317
           TIGQR+GLG+   GEP FV    L +N   V+ G    L    +Y   +  N L   L E
Sbjct: 238 TIGQRKGLGIGGAGEPWFVAGKNLPRNELLVVQGHDHPL----LYTNSLVMNDLSFTLPE 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 + C  + R +  P  +     D    V F+  +  V  GQ+ V Y  D      
Sbjct: 294 RPKPGRYTCKTRYRMADAPCELRYLDEDTAELV-FDMPQWAVTPGQSAVLYDGDV----C 348

Query: 378 LGGGIISGSKRS 389
           LGGGII  + + 
Sbjct: 349 LGGGIIVSTDKP 360


>gi|223986197|ref|ZP_03636216.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM
           12042]
 gi|223961834|gb|EEF66327.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM
           12042]
          Length = 381

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 189/376 (50%), Gaps = 28/376 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+++V +SGGVDS+V A LLK+ G DV    ++ ++S   +   G+       C   +D 
Sbjct: 2   MKILVGLSGGVDSAVAAYLLKQQGLDVTCAFMRNWDSMANNDFLGNPNADDDVCPQEKDW 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D++ +     D+ + + + V   F   Y  G TP P + CN+ +KFS  L   
Sbjct: 62  MDAKSVADSLGLELLRVDFVKEYWDNVFSNFLQEYKKGRTPNPDILCNKYIKFSSFLDFA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+ G D LATGHY R R      G     + +  DL +DQSYFL       L    FPLG
Sbjct: 122 RRRGFDTLATGHYARVRHEADFSG-----LYKAHDLNKDQSYFLCQVASDALRHTLFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
           +++K  VR +A+E+ L IA+K DS  ICF+ +  + + +K  N   A  G IV  ++ ++
Sbjct: 177 EIEKPEVRRIAKELRLSIAEKKDSTGICFIGERNFREFLK--NYLPAKSGKIVDVISRRV 234

Query: 253 LGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREI 308
           LG H G++ YTIGQR+       G P FVV  D   + ++V   ES   L      +  +
Sbjct: 235 LGDHEGVLYYTIGQRKGLGIGGEGGPWFVVGKDVVHNELLVASGESNDWLLSDTCLVSGV 294

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NWL     + A+     C  K R  Q   PV ++  D+  V + + +    V  GQ  VF
Sbjct: 295 NWLARTKPQGAL----SCCAKFRYRQKDNPVTLEFLDETTVRLTYPQQVASVTPGQQAVF 350

Query: 368 YTSDSNEARVLGGGII 383
           Y  +    + LGGG+I
Sbjct: 351 YLGE----QCLGGGVI 362


>gi|323341801|ref|ZP_08082034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464226|gb|EFY09419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 372

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 190/376 (50%), Gaps = 34/376 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+V+V +SGGVDS+V A +LK  G+DV    ++ ++S   +   G+       C    D 
Sbjct: 1   MKVLVGLSGGVDSAVAAHILKSQGHDVTCAFMRNWDSFANNDILGNPTIKDDMCSQEVDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+RV D + +     DY + + + V   F +    G TP P + CNR VKF       
Sbjct: 61  DDAKRVADHLGLELLRVDYVKEYWDHVFSFFLAETERGNTPNPDILCNRFVKFDAFYDFM 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G + LATGHY  +R     DGK    M R +D  +DQ+YFL     + L  + FPLG
Sbjct: 121 DANGFEALATGHYAITR-----DGK----MYRAVDQNKDQTYFLSRVRPEVLPRVLFPLG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-I 252
            + K+ VR +A E+ L +A K DS  ICF+ + +Y D +K  N    +EGDI+ ++ Q +
Sbjct: 172 SLTKDEVRRIALELDLPVATKKDSTGICFIGERQYRDFLK--NYLKDVEGDIIDVDTQKV 229

Query: 253 LGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           LG+H G++ YTIGQR GL ++    P FVV  D +++R+ VG       L      + E+
Sbjct: 230 LGKHQGVMFYTIGQRHGLDISTAVGPWFVVGKDLSTNRIYVGKGADHPMLFAGAAEIAEM 289

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           NW     F D  VD  +C  K R  Q  + V +   D+  + V+       V  GQ  VF
Sbjct: 290 NW-----FTDEKVD-LECTAKFRYRQKDIKVRISWLDETRLRVEMIDDVKSVTLGQEAVF 343

Query: 368 YTSDSNEARVLGGGII 383
           Y  +      LGGG I
Sbjct: 344 YLGEE----CLGGGRI 355


>gi|224536736|ref|ZP_03677275.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521652|gb|EEF90757.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 350

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 23/351 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++ MSGG DSSV A LL+  GY+V GVT + Y+S             + + DAR +  
Sbjct: 6   RVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSEGFE---------ESLDDARNLAS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ H ++D  E FR  +I  F   Y +  TP+PC  CN  +K+  L  +  ++G   +
Sbjct: 57  RLNIPHIIYDARELFRERIIRYFVDEYLSAHTPVPCTLCNNELKWPLLAKIADEMGIYWI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY+R    V  DG     +    D ++DQ++FL+   Q  L  +  P+GD  K  VR
Sbjct: 117 STGHYVRK---VFRDGY--YFIAPAADRDKDQTFFLWGLQQNILERMLLPMGDWTKNEVR 171

Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258
             A + G +  A K DS  +CF     Y   ++R     AL  +G  +  +G  LG H G
Sbjct: 172 AYAAKRGFERTATKKDSLGVCFCPM-DYRSFLQREVPQDALPGKGQFLDESGTFLGWHEG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ +  P+FV  + K  + VI+ P  SL    + L++ N +       
Sbjct: 231 YPFYTIGQRRGLGIHLNRPVFVKEIHKERNEVILAPLASLYKEEMLLKDWNIVDTS---- 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +++     V+IR  +      V   D+  ++V   +    +ASGQA  FY
Sbjct: 287 RLLNSEDVIVRIRYRKQANHCTVSITDENLLHVLLREPLESIASGQAAAFY 337


>gi|154149044|ref|YP_001406760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter hominis ATCC BAA-381]
 gi|205811613|sp|A7I2L9|MNMA_CAMHC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|153805053|gb|ABS52060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter hominis ATCC BAA-381]
          Length = 368

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/383 (31%), Positives = 191/383 (49%), Gaps = 63/383 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-- 78
           M+++VA+SGGVDS+V A +LK  GY++ G  ++L+              G+D Y A+   
Sbjct: 1   MKILVALSGGVDSAVSAKILKDAGYEIEGCYMKLH--------------GRDDYHAKNIE 46

Query: 79  ----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               V + + +  ++ D  + F+  V  PF  +Y  G+TP PC  CNRT+KF   L   R
Sbjct: 47  KVQDVGNFLEIKTHILDLCDDFKREVFEPFLQTYKVGKTPNPCALCNRTIKFGKFLDFAR 106

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G D +ATGHY +             ++   +DL +DQSYFL     + + ++ FPLG+
Sbjct: 107 SKGCDKIATGHYAKI---------ENNLIKSAVDLSKDQSYFLANIEPRVIPNIVFPLGN 157

Query: 195 MKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           M K+ V+  A        I+  S+S +ICFV+   Y DV++         G + +L G+I
Sbjct: 158 MLKKDVKKFAASFPELEKISKSSESNEICFVEN-TYIDVLREF-YKTETPGIVRNLQGEI 215

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +G+HNG +N+T+G+RRG  V    EP +VV +D   + ++VG +  L+ +    +  N  
Sbjct: 216 VGKHNGYMNFTVGKRRGFDVFGAHEPHYVVKIDAKKNEIVVGSKADLDKNEFETQNFNAF 275

Query: 312 GDGLFEDAVVDGFKCFVKI--RSSQDPVPVFVQRNDD-------GVYVDFEKSEV----- 357
              L  D ++   + +VKI  RS++    + +  ND+          ++FE S+      
Sbjct: 276 ---LNIDEILKMDEIYVKIRYRSAKIACKIEISLNDNLNNESLTDKNLNFENSDFLNNQD 332

Query: 358 ------------GVASGQACVFY 368
                       GVASGQ  VFY
Sbjct: 333 LKAKIILKTPANGVASGQLAVFY 355


>gi|163755895|ref|ZP_02163012.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Kordia algicida OT-1]
 gi|161324066|gb|EDP95398.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Kordia algicida OT-1]
          Length = 395

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 196/402 (48%), Gaps = 48/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVIVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++    + Y  G TP P V CNR +KF   L +   LGAD +
Sbjct: 62  KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFLKIALDLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +  +GK+   +    D  +DQSYFL   +Q+QL    FP+G++ K  VR
Sbjct: 122 ATGHYCRKET-IEKNGKQIHKLLAGKDGNKDQSYFLCQLSQEQLEKSLFPIGELTKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248
           ++A +  L  A+K DSQ +CF+ + K  D +++       EG IV +             
Sbjct: 181 EIAAKADLITAEKKDSQGLCFIGKVKLPDFLQQQLQ--PKEGVIVEVPNTIKSYHKELPE 238

Query: 249 --------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
                               +G+++G+H G   +T GQR+GL V    EPLFV+  D   
Sbjct: 239 FASKEEELAFYAQKYTYNQTDGKVVGKHQGAHYFTKGQRKGLAVGGTVEPLFVIETDVEE 298

Query: 288 SRVIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + +  G  +S   ++R  L     E++W+ + L   A  +  +   +IR  Q      + 
Sbjct: 299 NVIYTGQGKSHPGLYRRTLFVTDDELHWVREDLALQA-DESMEVMARIRYRQPLQKAVLY 357

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + + G YVDFE  +  +  GQ   +Y  +     ++G G+IS
Sbjct: 358 KIEGGAYVDFETPQSAITEGQFVAWYMDE----ELIGSGVIS 395


>gi|254448740|ref|ZP_05062197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium HTCC5015]
 gi|198261581|gb|EDY85869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium HTCC5015]
          Length = 359

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 188/369 (50%), Gaps = 30/369 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A  L   GY V G+ ++  N  +       C A  D+ DA++VCD + + 
Sbjct: 1   MSGGVDSSVTALTLLEQGYHVEGLFMK--NWEEEDPDSAYCPALIDMKDAQQVCDELEIP 58

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            +  ++ + + + V   F   Y+AG TP P V CN+ +KF   L     LGAD +ATGHY
Sbjct: 59  LHKVNFSKEYWDRVFQHFLDEYSAGRTPNPDVMCNKEIKFKAFLDHALGLGADYIATGHY 118

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R      DD   R  + +  D  +DQSYFL    Q +L    FP+G+M K  VR++A  
Sbjct: 119 VRRV----DDEDGRVHLYQGADKNKDQSYFLHTLGQAELSRALFPIGEMDKSHVREMAMN 174

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT--- 263
            G D  +K DS  ICF+ + ++ D + +     A  G +  L G +LG HNG++ YT   
Sbjct: 175 AGFDNHEKKDSTGICFIGERRFRDFLSQYLP--AQPGKVEDLEGTVLGDHNGLMYYTIGQ 232

Query: 264 --IGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317
                  GL  + GEP +VV   L++N  +V  G  E   + + +L   ++ W+      
Sbjct: 233 RQGIGIGGLRNSDGEPWYVVEKDLERNVLKVAQG-SEHPALFKTHLDASQLYWVNQA--P 289

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           DA +   +C  KIR  Q   P  +++ D  D V V F++ +  +  GQ+ VFY+ +    
Sbjct: 290 DAPL---RCEAKIRYRQTQQPCTIEQIDGSDAVVV-FDEPQRAITEGQSVVFYSGED--- 342

Query: 376 RVLGGGIIS 384
             LGGGII 
Sbjct: 343 -CLGGGIIE 350


>gi|319940913|ref|ZP_08015251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805629|gb|EFW02417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 382

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 182/372 (48%), Gaps = 25/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  GY+VIG+ ++ +     S+    C + QD  DA  V D
Sbjct: 21  KVVVGLSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSSRQDFIDATSVAD 77

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     ++ + +++ V   F   Y+AG TP P + CN  +KF   L    ++GAD +
Sbjct: 78  VVGIDIEAVNFAKEYKDRVFSNFLEEYSAGRTPNPDILCNSEIKFRAFLDHAMRMGADWI 137

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +   G DG     + R +D  +DQSYFL   +Q+Q+  + FP+G+M K  VR
Sbjct: 138 ATGHYARVQRPEGVDGPTE--LLRGIDPGKDQSYFLHRLSQEQIARVLFPVGNMFKTDVR 195

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E+ L  A K DS  ICF+ +  + + + R        G I   +G+++G H G+  
Sbjct: 196 RIAEEISLPNAKKKDSTGICFIGERPFREFLNRYLP--TQPGPIRTPDGKVVGEHVGLAF 253

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YT+GQR+G+GV     + GEP FV   D  ++ + +        L  H +     +W+  
Sbjct: 254 YTLGQRKGIGVGGQHDSTGEPWFVAKKDLKTNTLWICQGHDHPWLLSHELICVRPSWISG 313

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSD 371
              E          V+ R  Q   P            +D   S    A+ GQ+ V Y  D
Sbjct: 314 HAPEPNT----PVTVRTRYRQPDEPTRLAAVGAQAFTLDCTDSPQWAATPGQSAVLYQGD 369

Query: 372 SNEARVLGGGII 383
                 LGGG I
Sbjct: 370 V----CLGGGFI 377


>gi|288575004|ref|ZP_06393361.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570745|gb|EFC92302.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 349

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 177/370 (47%), Gaps = 38/370 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDS   A LL+R GY+ IGV L L                +D  D  R+
Sbjct: 6   DRRVLLGVSGGVDSCAAALLLRRSGYEPIGVRLILKEK-------------EDRLDEARL 52

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +++ +     D  + FR++V+ PF  +Y    TP PCV CN  VKF  L     + G
Sbjct: 53  KGLNSLGIPVVEIDGRKAFRSSVVEPFLEAYERSITPNPCVLCNERVKFRLLFEEADRRG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              + TGHY  +  Y G        + R     +DQSY L+    + L  L FPL ++ K
Sbjct: 113 IHTVGTGHYAGTTPYRGGSA-----ISRAEIGGKDQSYMLYRLPSEWLDRLIFPLENLSK 167

Query: 198 ESVRDLA-REMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILG 254
             VRDL  RE   +     DSQDICF+      + D   R  AG    G ++ L+G +LG
Sbjct: 168 PEVRDLVFREFDDEELKSGDSQDICFIPGSLDSFLDENLREEAG---PGPMISLDGDVLG 224

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH G+  YT GQR+GLG+  G P FVV  D++ + +I+G      V RI    + W    
Sbjct: 225 RHRGLCRYTEGQRKGLGLG-GGPWFVVRKDRSENALILGRETDTSVVRIGFSMLKW---- 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +  V +G     + R    P+P  V R N     V  EKS  GVA GQ+ V Y     
Sbjct: 280 --QHKVNEGSVYLAQHRYRSAPIPAVVSRLNQGSAEVLLEKSARGVALGQSLVLYDGPC- 336

Query: 374 EARVLGGGII 383
              +LGGG+I
Sbjct: 337 ---LLGGGVI 343


>gi|293604355|ref|ZP_06686762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292817232|gb|EFF76306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 360

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 181/374 (48%), Gaps = 30/374 (8%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ DA  V D + 
Sbjct: 1   MGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAASVADLVG 57

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +ATG
Sbjct: 58  VEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAEHIATG 117

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R R    + G  +  + + +D  +DQSYFL    Q QL    FPLGD+ K  VR +A
Sbjct: 118 HYARVREVPAEGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTLFPLGDIHKTEVRRIA 177

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYT 263
            E+GL  A K DS  ICF+ +  + + + R    +  E G I+   GQ +GRH G+  YT
Sbjct: 178 HEIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGPILTPEGQQVGRHEGLSFYT 234

Query: 264 IGQR----------RGLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310
           +GQR          R       E  +V    L++N   V+ G     L   ++  ++ +W
Sbjct: 235 LGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNILYVVQGHDHPWLLSSQLQAQDASW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369
           +         +  +    K R  Q      + +  DG + +DFE  +  V  GQ+ V Y 
Sbjct: 295 VAG---HPPAIASYGA--KTRYRQADAACRLDQAADGTFALDFEVPQWAVTPGQSAVLYD 349

Query: 370 SDSNEARVLGGGII 383
            D      LGGGII
Sbjct: 350 GDV----CLGGGII 359


>gi|167895830|ref|ZP_02483232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 7894]
          Length = 339

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 158/325 (48%), Gaps = 22/325 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313
           YT GQR+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVP 338
               +   DG +C  K R  Q   P
Sbjct: 295 ----EPPADGARCGAKTRYRQADAP 315


>gi|260171966|ref|ZP_05758378.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
          Length = 350

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 184/379 (48%), Gaps = 59/379 (15%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DS+    +L+  GY+++GVT++++              G +  DAR +   + + 
Sbjct: 1   MSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAVRMGIE 46

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L    +ATGHY
Sbjct: 47  HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWIATGHY 106

Query: 147 IR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            R       + +  GDD K            +DQSYFL+   Q+ L    FPLGD  K  
Sbjct: 107 SRLEEKNGYTYIVAGDDDK------------KDQSYFLWRLGQEVLKRCIFPLGDYTKVK 154

Query: 200 VRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           VR+   E G +   K  +S ++CF+ +G Y D ++     +  E   G  V+  G  LG+
Sbjct: 155 VREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVNSEGVKLGQ 213

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + L    +            
Sbjct: 214 HKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAE--------- 264

Query: 316 FEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY
Sbjct: 265 -QDKIVDEQELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFY 323

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLGG  I+  +
Sbjct: 324 DG----RRVLGGAFIASQR 338


>gi|325134641|gb|EGC57281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M13399]
 gi|325144816|gb|EGC67105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240013]
 gi|325205709|gb|ADZ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M04-240196]
          Length = 367

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +     +    V F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362


>gi|313203848|ref|YP_004042505.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
 gi|312443164|gb|ADQ79520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
          Length = 346

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 42/374 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79
           R+++ MSGG DSSV A LL   GY+VIG+T + +              G++ +  DA ++
Sbjct: 4   RILLGMSGGTDSSVAAILLLEQGYEVIGITFRFWEE------------GENFHLQDAVKL 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR  V+  F   Y +G TP PCV CN  +K+  +L    +LG D
Sbjct: 52  AGQLGIQHVTYDAREVFRANVVQYFMDEYLSGRTPFPCVKCNNELKWKLILEEADRLGCD 111

Query: 140 VLATGHYI----RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            +A GHY+        Y   +GK         D E+DQS+FL+  TQ QL  + FPLG  
Sbjct: 112 KVAMGHYVNIIQEDNHYFVTEGK---------DPEKDQSFFLWGLTQAQLSRIVFPLGQF 162

Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQ 251
            K  VR +A   G   +++K DS   CF   G Y   +K+  A        G+ +   G 
Sbjct: 163 HKTDVRAMAAVRGYKKVSEKKDSLGACFC-SGDYRPFLKKQLAEPDKYIYPGNFMDEEGN 221

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H+G   YT+GQRRGL + +   +FV  +   ++ V++ P  S+      +R++N +
Sbjct: 222 VLGTHDGFPLYTVGQRRGL-IHLNRKVFVKEIRPETNDVVLAPLRSMYKTEFLIRDVNVV 280

Query: 312 GDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
              LF       F    +IR   Q+ +   V   +    V+  +    +A GQ  VFY  
Sbjct: 281 DKSLFSSE----FDVLCRIRYRKQNTLSRVVFLENRTARVELSEPLESIAPGQTAVFY-- 334

Query: 371 DSNEARVLGGGIIS 384
              + R+LGGG IS
Sbjct: 335 --RDGRILGGGFIS 346


>gi|294625260|ref|ZP_06703899.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600434|gb|EFF44532.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 378

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  LLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  N+   +   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q      V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 EE--CLGGAVIAAT 359


>gi|167764091|ref|ZP_02436218.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC
           43183]
 gi|167698207|gb|EDS14786.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC
           43183]
          Length = 350

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 176/359 (49%), Gaps = 33/359 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79
           RV++ MSGG DSSV A  L+  GY+V GVT + Y              G+  Y  DAR +
Sbjct: 6   RVLLGMSGGTDSSVAAMKLQEAGYEVTGVTFRFYE-----------VGGKTEYLEDARAL 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR  +I  F   Y AG TP+PC  CN  +K+  L  +  + G  
Sbjct: 55  AGRLGIEHITYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWKLLAEIADEKGIY 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY+R +L++ D+      +   +D ++DQ++FL+   Q  L  +  P+GDM KE 
Sbjct: 115 WISTGHYVR-KLFLEDN----YYIAPAVDRDKDQTFFLWGLKQDILQRMLLPMGDMTKED 169

Query: 200 VRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDIVHLNGQIL 253
            R  A E G + +A K DS  +CF       D    +   + +E     G  +   G +L
Sbjct: 170 ARAYAAERGFMRVAAKKDSIGVCFCP----LDYRSFLKREVPMEQLPGRGHFLDEKGNVL 225

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   YTIGQRRGLG+ +   +FV  +   ++ V++ P  SL    +YL++ N +  
Sbjct: 226 GWHEGYPFYTIGQRRGLGIHLNRAVFVKEVRMETNEVVLAPLASLYKKEMYLKDWNLIS- 284

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                 V+      VKIR  +      V + ++G + V   +    +A GQA  FY +D
Sbjct: 285 ---AHRVLGAETVIVKIRYRKQANRCMVAQEENGHLRVSLLEPLESIAPGQAAAFYDAD 340


>gi|91790389|ref|YP_551341.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas sp. JS666]
 gi|91699614|gb|ABE46443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaromonas sp. JS666]
          Length = 421

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 191/406 (47%), Gaps = 42/406 (10%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           ++R N   +DK     R+VV +SGGVDS+V A LLK+ G++VIG+ ++ +     S+   
Sbjct: 13  SSRDNRTPMDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE--- 69

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C +  D  DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +K
Sbjct: 70  YCSSNIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIK 129

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F   L    +LGA+ +ATGHY R R    ++      + + +D  +DQSYFL    Q QL
Sbjct: 130 FKAFLDHAMRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLNQAQL 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G++ K  VR +A E+GL  A K DS  ICF+ +  + D + R  A     G I
Sbjct: 187 SKTLFPVGELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIA--KAPGPI 244

Query: 246 VHLNGQILGRHNGIINYTIGQRRGL---------------------GVAMGEPLFVVY-- 282
            +  G++LG+H G+  YT+GQR+GL                     GV   EP FV    
Sbjct: 245 KNDRGRVLGKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFVARKD 304

Query: 283 LDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVF 340
           LD N+  V+ G     L+   +  ++ +W+       A   G     K R  Q D     
Sbjct: 305 LDTNTLWVVQGHDHPWLQSTVLSAQDCSWVAG----TAPAAGLMA-AKTRYRQVDATCEL 359

Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                    + F + +  V  GQ+ V Y  D      LGGG+I+ S
Sbjct: 360 RSATTANCELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 401


>gi|257463089|ref|ZP_05627490.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
 gi|317060688|ref|ZP_07925173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313686364|gb|EFS23199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 345

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 160/292 (54%), Gaps = 25/292 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDS+V A LL+++GY+VI V   ++N+    K         ++ D +++ D
Sbjct: 4   KVILGMSGGVDSAVAAYLLQKEGYEVIAVHFSVHNTEATQK---------ELQDCQKIAD 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +++ Y +  E+ FR  +I  + S    G+TP PC  C+ ++KF  L     +  A+ +
Sbjct: 55  KFSLTLYSYSLEKEFREKIISYYLSETGKGKTPSPCPLCDDSIKFHLLFQEAEKRKANYV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLE------RDQSYFLFATTQQQLCDLRFPLGDM 195
           ATGHY             R  +C    LE      +DQ Y L+  + ++L  + FPL  +
Sbjct: 115 ATGHYASIS---------RNNICNTTLLEVKHHIHKDQCYMLYRLSPKKLNKILFPLASL 165

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR+LAR++GL +++K DSQ ICF  +G Y + +K+  A    +G+ +   G ILG+
Sbjct: 166 EKAEVRELARDIGLFVSEKKDSQGICFAPEG-YQNFLKKHLAKKIQKGNFIDEKGNILGQ 224

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           H G   YT+GQRRGLG+   E  F+  +D   + + +G  ESL   ++ L +
Sbjct: 225 HLGYPLYTLGQRRGLGIKTKEICFITKIDPGKNEITLGNFESLMKDKVQLED 276


>gi|325299223|ref|YP_004259140.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
 gi|324318776|gb|ADY36667.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
          Length = 379

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 185/389 (47%), Gaps = 49/389 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      ++ +A+ 
Sbjct: 3   KDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSHFSTPGQE-QPDEILEAQA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + H+V D  E FR  ++  F   Y  G TP PCV CN   K   L     + G 
Sbjct: 62  VAARLGIEHHVADVREEFRKVIVQYFIDEYMRGRTPNPCVLCNPLFKERILCEWADRTGC 121

Query: 139 DVLATGHY--IRSR-----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +ATGHY  I  R     +  GDD              +DQSYFL+   Q+ L  + FP
Sbjct: 122 QWIATGHYCQIEKRNGWFYIVTGDDAT------------KDQSYFLWKLPQEILSRMLFP 169

Query: 192 LGDMKKESVRDLAREMGLDIADK-SDSQDICFVQQG-KYF------DVVKRINAGIALEG 243
           LG M K+ VR+     G +   K  +S +ICF+ +  + F      D+ +RI  G     
Sbjct: 170 LGGMTKDKVREYLAHKGFEAKAKGGESMEICFIDKDYREFLREHCPDIDERIGPGW---- 225

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
             V   G  LG+H G   YTIGQR+GLG+A+GEP +V+ ++   + V++G  + L    +
Sbjct: 226 -FVDSKGVKLGQHKGFAYYTIGQRKGLGIALGEPAYVLKINPEKNTVMLGDADQLRTEYM 284

Query: 304 YLREINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVG 358
                  L +      + +   C    V+IR    P+P  V R  +  Y  V F      
Sbjct: 285 -------LAEPPVAPDIEELLACPNLSVRIRYRSRPIPCQVVRLPENGYLLVRFAVEASA 337

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSK 387
           +  GQ+ VFY  D N  RVLGG  I+  +
Sbjct: 338 ITPGQSAVFY--DGN--RVLGGSFIASQQ 362


>gi|167957606|ref|ZP_02544680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [candidate division TM7 single-cell isolate TM7c]
          Length = 340

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 181/371 (48%), Gaps = 40/371 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGGVDSS+ AALL   G++V GV ++ ++      +   C    D+ DA+RV 
Sbjct: 1   MKVFVGMSGGVDSSLTAALLIERGHNVTGVYMKNWSQDLPGMK---CPWADDLADAKRVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V+D+E+ +R  V+    S+Y+ G TP P + CN+ VKF   L      GAD+
Sbjct: 58  VQLGIDLKVYDFEKEYRENVVEYMISAYSQGYTPNPDIMCNQEVKFKLFLETALADGADM 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R         R  M    D  +DQ+YFL+  T Q L    FPLG+  K+ V
Sbjct: 118 IATGHYATTR-------DNRLFMAS--DANKDQTYFLYRVTSQALSKTFFPLGEYTKQKV 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-------GKYFDVVKRINAGIALEGDIV-HLNGQI 252
           R ++ +  L  A K DSQ ICFV +        +Y D            GDI+    G+ 
Sbjct: 169 RQMSEDRHLFTAKKKDSQGICFVGKIGIREFLSQYVD---------TKPGDIIDQKTGKK 219

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H+G I YTIGQR GL +  G P +VV  +  S+ V V     +  + I+  E     
Sbjct: 220 IGTHDGAIFYTIGQRHGLNIGGGLPYYVVGKNMQSNEVYVS--NDINHNGIWRSETKIES 277

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                +   DG     +IR     V + +     G  V F++ +  +A GQ+ V Y  + 
Sbjct: 278 KHWINNVPKDG-NYLARIRHRAPLVKITLL----GSKVIFDEPQRAIAPGQSVVIYDGE- 331

Query: 373 NEARVLGGGII 383
                LGGGII
Sbjct: 332 ---ECLGGGII 339


>gi|21242742|ref|NP_642324.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|24638307|sp|Q8PL08|MNMA_XANAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21108220|gb|AAM36860.1| tRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 378

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 183/374 (48%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSDVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    V   G R R++ R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  N+   +   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q      V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDESCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGEE 349

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 350 ----CLGGAVIAAT 359


>gi|89902516|ref|YP_524987.1| tRNA-specific 2-thiouridylase MnmA [Rhodoferax ferrireducens T118]
 gi|122478272|sp|Q21RZ7|MNMA_RHOFD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89347253|gb|ABD71456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodoferax ferrireducens T118]
          Length = 384

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 191/398 (47%), Gaps = 42/398 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K     RVVV +SGGVDS+V A LLK+ GY+VIG+ ++ +     S+    C +  D 
Sbjct: 1   MNKRHSGQRVVVGLSGGVDSAVTAWLLKQQGYEVIGIFMKNWEDDDDSE---YCSSNVDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +KF   L   
Sbjct: 58  IDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGD----DGKRRRI------MCRPMDLERDQSYFLFATTQQ 183
            +LGA  +ATGHY R R    D    D  + ++      + + +D  +DQSYFL    Q 
Sbjct: 118 LRLGAQKIATGHYARVRCVAADGRVLDAAQAQMSDGRFELLKGLDPSKDQSYFLHRLNQA 177

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE- 242
           QL    FP+G++ K  VR LA E+GL  A K DS  ICF+ +  + D + R    IA E 
Sbjct: 178 QLSKTLFPVGELLKTEVRRLALEIGLPNAKKKDSTGICFIGERPFRDFLNRY---IAREP 234

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGV----------AMGE--PLFVVYLD--KNSS 288
           G I    G+ +G+H G+  YT+GQR+GLG+            GE  P FV   D   N+ 
Sbjct: 235 GPIKDDKGRTIGQHVGLSFYTLGQRQGLGIGGLKAKGAQRGGGEHAPWFVARKDLATNTL 294

Query: 289 RVIVGPRES-LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347
            V+ G     L+ H +  ++ +W+             +   K R  Q   P  +      
Sbjct: 295 WVVQGHEHPWLQSHGLSAQDASWVA-----GTAPQAGRFSAKTRYRQLDAPCTLAAGAGA 349

Query: 348 VY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + F + +  V  GQ+ V Y    ++   LGGG+I+
Sbjct: 350 AFHLSFPEPQWAVTPGQSAVLY----DDEVCLGGGVIA 383


>gi|212692631|ref|ZP_03300759.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855]
 gi|212664916|gb|EEB25488.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855]
          Length = 375

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 193/388 (49%), Gaps = 44/388 (11%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVY 74
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++  SR ++  +       DV 
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQDE---PDDVL 58

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +A+ + + + + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     
Sbjct: 59  EAKALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWAD 118

Query: 135 QLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           Q     ++TGHY R      +LY+  GDD              +DQSYFL+   Q+ L  
Sbjct: 119 QTNCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQR 166

Query: 188 LRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---G 243
             FPLG   K+ VR+  R+ G +  A   +S +ICF+ +G Y + ++     I  +   G
Sbjct: 167 FLFPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPG 225

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
             V+  G  +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   +
Sbjct: 226 WFVNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYM 285

Query: 304 YLREINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGV 359
            + + +          + D  +C    V+IR    P+P  V   D+  + V F      +
Sbjct: 286 LVEDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAI 338

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSK 387
           A GQ+ VFY       RVLGG  I+  +
Sbjct: 339 APGQSAVFYEG----KRVLGGAFIASQR 362


>gi|265752582|ref|ZP_06088151.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|263235768|gb|EEZ21263.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 375

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 189/386 (48%), Gaps = 40/386 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + + + + + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  KALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++TGHY R      +LY+  GDD              +DQSYFL+   Q+ L    
Sbjct: 121 NCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFL 168

Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLG   K+ VR+  R+ G +  A   +S +ICF+ +G Y + ++     I  +   G  
Sbjct: 169 FPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWF 227

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + +
Sbjct: 228 VNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLV 287

Query: 306 REINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
            + +          + D  +C    V+IR    P+P  V   D+  + V F      +A 
Sbjct: 288 EDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAP 340

Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387
           GQ+ VFY       RVLGG  I+  +
Sbjct: 341 GQSAVFYEG----KRVLGGAFIASQR 362


>gi|310827792|ref|YP_003960149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
 gi|308739526|gb|ADO37186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
          Length = 343

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 184/368 (50%), Gaps = 30/368 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V+V  SGG DS+    +LK  GY+V+GVT   + +    + K S  A Q       
Sbjct: 2   KNKKVIVGFSGGADSAAAVLILKNKGYEVLGVTFDFFGNEPLLE-KASVLAKQ------- 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I + H   + +  FR  VI PF S Y  G TP PCV C+  +KF  L++   +  A
Sbjct: 54  ----IGIQHECINRQREFREKVIKPFISEYLRGYTPNPCVRCDAGMKFRGLMAYANEKEA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
           + +ATGHY+R       + +  ++  +   D  +DQSY+L+   Q+ L  L FPL   + 
Sbjct: 110 EFIATGHYLRL------EKRHGQVQIKTSEDSRKDQSYYLYTLDQEYLSRLIFPLSAFQS 163

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K++VR    + G+ +    +SQ ICF+  G Y   +K+    +  EG      G+ILG H
Sbjct: 164 KDAVRAFLEKEGIALPKSEESQGICFIPDGNYARFIKK-ETPLMPEGRFRDRFGKILGSH 222

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           NG   YT+GQ+RG+ V  G+   V  L    + VI+G    L   +I+L+E++++   L+
Sbjct: 223 NGFYYYTVGQKRGVPVISGKKYVVTALRPEFNEVILGEESDLYQKKIFLKELHFIDGSLY 282

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              +   FK  V       P  + +  +  G Y++ EK+      GQ+ VFY  D    R
Sbjct: 283 SGEIQ--FK--VCRWGYLYPGRLHLSGDRRG-YLECEKAVRAPMPGQSAVFYDGD----R 333

Query: 377 VLGGGIIS 384
           +LGGGII 
Sbjct: 334 LLGGGIIE 341


>gi|71908904|ref|YP_286491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dechloromonas aromatica RCB]
 gi|123626679|sp|Q47AW0|MNMA_DECAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71848525|gb|AAZ48021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dechloromonas aromatica RCB]
          Length = 365

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 36/378 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK+ G++VIG+ ++ +      +    C + QD+ D   V D 
Sbjct: 6   VVVGLSGGVDSSVAALLLKQQGWNVIGLFMKNWEDDDTEE---YCSSRQDLIDVMSVADK 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +   V ++   +R  V   F S Y AG TP P + CN  +KF   L    QLGA+ +A
Sbjct: 63  IGIDVEVVNFAAEYRERVFAEFLSEYQAGRTPNPDILCNSEIKFKAFLDHAMQLGAEKIA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY   R +   DGK +  + +  D  +DQSYFL+   Q QL    FPL D+ K  VR 
Sbjct: 123 TGHYAGVREF---DGKFQ--LLKAEDGTKDQSYFLYRLNQAQLSKTLFPLADIYKRDVRK 177

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261
           +A   GL +A K DS  ICF+ +  + D + R       +G+I  L +G+++G H+G++ 
Sbjct: 178 IAEAEGLHVAAKKDSTGICFIGERPFKDFLSRYLP--PKKGEIRRLDDGKVMGEHDGLMF 235

Query: 262 YTIGQRRGLGVA----MGEP-------LFVVY--LDKNSSRVIVGP-RESLEVHRIYLRE 307
           +T+GQR+GL +      G P        FV    ++KN   V+ G    +L    +   +
Sbjct: 236 HTMGQRKGLHIGGIKEKGHPGGGDHDAWFVAGKDMEKNVLYVVQGHDHPALLKGDLVAEQ 295

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+         V  +    + R+S  P    V+R D +   + F + +  +  GQ+ V
Sbjct: 296 LSWVSGNEPHTHWV--YTAKPRYRTSDQPCE--VERVDAESCEIRFAEPQWALTPGQSVV 351

Query: 367 FYTSDSNEARV-LGGGII 383
            Y     E+RV LGGG+I
Sbjct: 352 LY-----ESRVCLGGGVI 364


>gi|313899166|ref|ZP_07832687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. HGF2]
 gi|312956035|gb|EFR37682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. HGF2]
          Length = 393

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 190/376 (50%), Gaps = 29/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ +SGGVDS+V A LLK  GYDV    ++ ++S   +   G+       C   QD  
Sbjct: 11  KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDYL 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V D + +     D+ + + + V   F   Y  G TP P + CN+ +KF   +   R
Sbjct: 71  DAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDAFMDYAR 130

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LG D LATGHY +      D       M R  D  +DQ+YFL   +Q  L    FP+G 
Sbjct: 131 RLGFDTLATGHYAQV-----DHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPIGH 185

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252
           M+K+ VR++A  M L+ +A+K DS  ICF+ +  + + +K  N   + +GDI+ +   ++
Sbjct: 186 MEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLK--NYLPSRDGDIMDIKTLEV 243

Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVGPR-ESLEVHRIYLREI 308
           +GRH+G++ YTIGQR+GLG+     P FVV  D  KN   V  G   + L      +  +
Sbjct: 244 VGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCIVSGV 303

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NW      +   V    C  K R  Q    V ++  D+  V++ + +    V +GQ  VF
Sbjct: 304 NWFSSERPQGDYV----CTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAVF 359

Query: 368 YTSDSNEARVLGGGII 383
           Y  +      LGGG+I
Sbjct: 360 YQKEE----CLGGGVI 371


>gi|317154023|ref|YP_004122071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944274|gb|ADU63325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 349

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+  VA+SGG+DS +  AL++  G++V+ V  +   S   S +  +  A          C
Sbjct: 1   MKTAVAVSGGMDSLLALALMRAGGHEVLAVHGRFLPSGPDSDKAIAGLA--------EAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  +V D    F   V+ PFA +Y  G TP PC  CN  +KF  L      LGAD 
Sbjct: 53  ARLGVPLHVADLRREFEREVVAPFADAYRQGRTPNPCAVCNPRMKFGALFRFALSLGADA 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    + + G    ++ R  D ++DQSYFL     + L    FPLGD+ K  V
Sbjct: 113 LATGHYAR----LEERGPSGLLLTRGGDPDKDQSYFLSLVPIETLRRAHFPLGDICKRDV 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +    +GL      +SQ+ICFV    Y   + R    +   G I   +G ++GRH G+ 
Sbjct: 169 PETLAGLGLTPPLPGESQEICFVPGDDYQTFLTR-RGNMPGTGPIRLEDGTVIGRHKGLW 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T GQRRGLG+A  EPL+V+      + +IVGP+ SL        ++N++ D      V
Sbjct: 228 RHTQGQRRGLGIAWTEPLYVLDKRVADNTLIVGPKPSLHAPGCVAWQVNFMTDPAGWPEV 287

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           V      ++ R  Q   P     +   +   F +     A GQ    Y        VLGG
Sbjct: 288 V-----MLQTRYRQRARPARFAVDGSRLVFHFIEEHTRPAPGQVAAVY---DEAGAVLGG 339

Query: 381 GII 383
           G+I
Sbjct: 340 GVI 342


>gi|120613352|ref|YP_973030.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax citrulli AAC00-1]
 gi|166991120|sp|A1TWB8|MNMA_ACIAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120591816|gb|ABM35256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax citrulli AAC00-1]
          Length = 378

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 193/389 (49%), Gaps = 34/389 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D 
Sbjct: 1   MTASPK-QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L   
Sbjct: 57  VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++GA+ +ATGHY R R    +       + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 117 MRVGAEKIATGHYARVRH---NPATGLHELLKGLDPAKDQSYFLHRLNQSQLSRTLFPVG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E+GL  A K DS  ICF+ +  + + + R        G I+   G+ L
Sbjct: 174 ELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYIQ--HAPGPILDDRGRRL 231

Query: 254 GRHNGIINYTIGQRRGLGV----------AMGE--PLFVV--YLDKNSSRVIVGP-RESL 298
           G+H G+  YT+GQR+GLG+            GE  P FV    +++N  RV+ G     L
Sbjct: 232 GQHVGLSFYTLGQRQGLGIGGVKDKGAQRGGGEHAPWFVARKEVERNVLRVVQGHDHPWL 291

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEV 357
             H +   + NW+  G    A      C  K R  Q      V + + G + + F +++ 
Sbjct: 292 LSHTLQATDANWVA-GRPPAAGA----CAAKTRYRQQDAACTVTQAEGGDFALSFPEAQW 346

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
            V  GQ+ V Y  +      LGGG+I+ +
Sbjct: 347 AVTPGQSAVLYDGEV----CLGGGVITAA 371


>gi|325066902|ref|ZP_08125575.1| tRNA-specific 2-thiouridylase MnmA [Actinomyces oris K20]
          Length = 384

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/393 (34%), Positives = 185/393 (47%), Gaps = 49/393 (12%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYV 89
           DS+V AA     G++V+GV + L  +R A  R GS  CC+ +D  DAR     + +  YV
Sbjct: 1   DSAVAAARAVDAGHEVVGVHMALTRNR-AQTRSGSRGCCSIEDSADARWAAQILGIPFYV 59

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR- 148
           +D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG D +ATGHY R 
Sbjct: 60  WDLSEEFEERVVSDFLDEYRAGRTPNPCVRCNERVKFDALLERALALGFDAVATGHYARL 119

Query: 149 ----SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203
               S  + GD       + R +D  +DQSY L  + ++ L    FPLGD   K  VR  
Sbjct: 120 SGGASSGHPGD--PEGLTLRRAVDAAKDQSYVLAVSGREGLARALFPLGDAPSKAQVRAE 177

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A   GL +A K DS DICFV  G     + R     A EG +V  +G++LG H G   +T
Sbjct: 178 AEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--AHEGTMVSPDGEVLGTHQGYFGFT 235

Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF--- 316
           +GQR+GLG++     G P +V+     ++ V+VGP E L    +        GDGL    
Sbjct: 236 VGQRKGLGLSHPAEDGRPRYVIETRPATNEVVVGPEELLSRTAVD-------GDGLVLLA 288

Query: 317 -----------------EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSE 356
                                V   +  V++R+   PVP  V R D     ++ +     
Sbjct: 289 DPEPLTTGPDTGTTDSDGSPAVGWQEASVQVRAHGRPVPAMV-RVDAAQGLLHAELATPL 347

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
            GVA+GQ+ V Y  D  + +VL    ++ +  S
Sbjct: 348 RGVAAGQSLVIYGGDDGD-QVLAQATVASAPAS 379


>gi|47093434|ref|ZP_00231199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 4b H7858]
 gi|47018213|gb|EAL08981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 4b H7858]
          Length = 333

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 170/332 (51%), Gaps = 20/332 (6%)

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G C A +D  D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +
Sbjct: 11  GVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEI 70

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF   L     LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q Q
Sbjct: 71  KFKAFLEHAESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQ 125

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  + FPLG M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G+
Sbjct: 126 LKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGE 183

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEV 300
           +  LNG++LG+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L  
Sbjct: 184 MRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYS 243

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGV 359
             +   +I++  +      +    +C  K R  Q    V V   +DG   V F      +
Sbjct: 244 DSLIATDISFTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAI 299

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
             GQA VFY  D      LGGG I    ++ A
Sbjct: 300 TPGQAVVFYDGDI----CLGGGTIDTVWKNGA 327


>gi|33593833|ref|NP_881477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella pertussis Tohama I]
 gi|33600935|ref|NP_888495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella bronchiseptica RB50]
 gi|81423057|sp|Q7U359|MNMA_BORPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81423064|sp|Q7U387|MNMA_BORBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33563906|emb|CAE43165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella pertussis Tohama I]
 gi|33568535|emb|CAE32447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella bronchiseptica RB50]
          Length = 371

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 186/384 (48%), Gaps = 28/384 (7%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  NP +  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD
Sbjct: 1   MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L  
Sbjct: 58  LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGA+ +ATGHY R R      G R +++ + +D  +DQSYFL    Q QL    FPL
Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGPRHQLL-KALDDTKDQSYFLHRLNQVQLARTLFPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A E+GL  A K DS  ICF+ +  + + + R     +  G I+   GQ 
Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234

Query: 253 LGRHNGIINYTIGQR------------RGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299
           +G H+G+  YT+GQR            R  G A         L +N   V+ G     L 
Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
             ++  ++ +W+     E      +    + R + D      Q   +   + FE+++  V
Sbjct: 295 SAQLQAQDASWIAG---EPPAAGAYGAKTRYRQA-DAACRLDQAGGERFALAFEQAQWAV 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQ+ V Y  +      LGGGII
Sbjct: 351 TPGQSAVLYDGEV----CLGGGII 370


>gi|150021435|ref|YP_001306789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosipho melanesiensis BI429]
 gi|205828980|sp|A6LNA3|MNMA_THEM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149793956|gb|ABR31404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosipho melanesiensis BI429]
          Length = 339

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 31/351 (8%)

Query: 40  LKRDGYDVIGVTLQ-----LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEE 94
           +K+ GY V    L+     LY +++   +   CC+  D +DA++V     V   +   E 
Sbjct: 1   MKKKGYAVTAYHLKTVPDSLYLTKQIKHK--VCCSPSDTFDAKKVAQKFGVELKIIHVEN 58

Query: 95  RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVG 154
            FR  +I  F + Y  G TP PC  CN  +KF  LL    Q G D +A+GHY   R    
Sbjct: 59  VFRETIIKYFINEYKRGRTPNPCFFCNDWIKFGVLLERIIQDGNDYVASGHYALLR---- 114

Query: 155 DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADK 214
            DGK    + +  + E+DQSYFL +  +++L  L FP G+  K+ +R++A+++ + I  K
Sbjct: 115 -DGK----LYKAKNKEKDQSYFLASIKREKLGYLVFPNGEYNKDEIRNIAKDLNIHIHSK 169

Query: 215 SDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM 274
            DSQD+CF+     +  +K    G   EG I+   G ILG H G+ NYTIGQR+ +G+A+
Sbjct: 170 EDSQDLCFIPDNNIYGFLKENGVGFK-EGLIIDTKGNILGTHKGLSNYTIGQRK-IGIAV 227

Query: 275 GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ 334
            E ++V+  D   + ++VG +  +  ++  + ++N+L D      V    + +VK+R   
Sbjct: 228 RERMYVLRKDFEKNLLVVGKKGEVFNNKFTVSKLNFLQD------VYKKIEGYVKVRKKF 281

Query: 335 DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             V   V  ++D +YV+  +    +  GQ  V Y  D       G  I+SG
Sbjct: 282 KEVKCRVYVDNDNLYVETREPIFAITPGQIAVIYDED-------GAVIVSG 325


>gi|320528367|ref|ZP_08029529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Solobacterium moorei F0204]
 gi|320131281|gb|EFW23849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Solobacterium moorei F0204]
          Length = 382

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 181/362 (50%), Gaps = 25/362 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V+V +SGGVDS+V A LL++ GYDV    ++ ++S       G+       C    D  
Sbjct: 3   KVLVGLSGGVDSAVAAYLLQQQGYDVTCAFMRNWDSVANEDFSGNPTLYDPVCPQEADYK 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA  V   + +     D+ + + + V   F   Y  G TP P + CNR +KF   +   +
Sbjct: 63  DAADVAAKLGLELLRIDFIKEYWDDVFQTFIDEYKLGRTPNPDILCNRYIKFDSFMKFAK 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G D++ATGHY R    +G++G    ++C+ +D  +DQSYFL    ++ L  + FPLG+
Sbjct: 123 EKGFDIVATGHYAR----LGEEG-NHHVLCKAVDHNKDQSYFLTEIRREVLEHVLFPLGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QIL 253
           ++K  VR +A E+GL IA K DS  ICF+ + ++ + +   N      GDI+ +   Q +
Sbjct: 178 IEKPEVRRIAEELGLSIAKKKDSTGICFIGERRFREFLG--NYLPMKSGDIIDVTTKQKV 235

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVI-VGPRESLEVHRIYLREINW 310
           G H G++ YTIGQR+GL +    P FVV  D  KN   V+    ++ L      +  +NW
Sbjct: 236 GIHQGVMYYTIGQRKGLDIGGIGPFFVVGKDVYKNELYVVDANHQDLLYATSCLVTGVNW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-FEKSEVGVASGQACVFYT 369
           L D           +C  K R  Q    V +  N+DG     F +    +  GQ  VFY 
Sbjct: 296 LADRTLP------LQCHAKFRYRQADNDVELVLNEDGTLTALFPEGIRSITPGQEAVFYD 349

Query: 370 SD 371
            D
Sbjct: 350 GD 351


>gi|329954114|ref|ZP_08295209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328528091|gb|EGF55071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 350

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 178/356 (50%), Gaps = 24/356 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N K+ RV++ MSGG DSSV A  L+  GY+V GVT + Y +   +         + + DA
Sbjct: 2   NSKE-RVLLGMSGGTDSSVTAMKLQEAGYEVTGVTFRFYEADGKA---------EYLEDA 51

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + D + + H ++D  + FR  +I  F   Y AG TP+PC+ CN  +K+  L  +  + 
Sbjct: 52  RTLADRLGIEHIIYDARKLFRERIIRYFIDEYLAGHTPVPCILCNNELKWKLLAEIADEK 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   ++TGHY+R +L + D       +    D ++DQ++FL+   Q  L  +  P+GDM 
Sbjct: 112 GIYWISTGHYVR-KLLLEDT----YYIAPAADRDKDQTFFLWGLKQDILKRMLLPMGDMT 166

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQIL 253
           KE  R  A   G + +A K DS  +CF     Y   +KR      L   G  +   G+IL
Sbjct: 167 KEEARAYAAGRGFMRVATKKDSIGVCFCPL-DYRSFLKREVPAEQLPGRGHFLDEKGEIL 225

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   YTIGQRRGLG+ +   +FV  +  +++ V++ P  SL  + +YL++ N +  
Sbjct: 226 GWHEGYPFYTIGQRRGLGLHLNRAVFVKEIKMDTNEVVLAPLASLYKNEMYLKDWNLIST 285

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                 V+      VKIR  +      V    DG + V   +    +A GQA  FY
Sbjct: 286 ----HRVLGAETVIVKIRYRKQANRCMVTLEGDGHLRVSLLEPLESIAPGQAAAFY 337


>gi|319779294|ref|YP_004130207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Taylorella equigenitalis MCE9]
 gi|317109318|gb|ADU92064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Taylorella equigenitalis MCE9]
          Length = 371

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 189/379 (49%), Gaps = 29/379 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  GYDV+GV ++ +     S+    C   QD  D   V D
Sbjct: 5   KVVVGLSGGVDSSVSAYLLKEQGYDVLGVFMKNWEDDDDSE---FCSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ +     ++   +++ V   F   Y+AG TP P V CN  +KF   L      GAD +
Sbjct: 62  TLGIDVDAVNFATEYKDRVFSDFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMNTGADFI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G  GK  +++ + +D  +DQSYFL    Q QL  + FP+G++ K  VR
Sbjct: 122 ATGHYARVRAIDGPSGKTYQLL-KGLDPNKDQSYFLHRLNQDQLSKVIFPVGELLKTKVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++ L  A K DS  ICF+ +  + + + +        G I+  +G+++G H G+  
Sbjct: 181 EIAEKLNLSNAKKKDSTGICFIGERPFREFLNKYLP--TKPGPILTDSGELIGEHVGLSF 238

Query: 262 YTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREI 308
           YTIGQR+G+G+           + +  +V   D KN++  +V   +   L   ++Y  + 
Sbjct: 239 YTIGQRKGIGIGGVKSHMSLDGVSDAWYVARKDMKNNTLYVVNGHDHPWLLSKKLYALDA 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +W+ +       +  +    + R +     + F Q  +    + F + +  V  GQ+ V 
Sbjct: 299 SWINE---YTPSIGTYAAKTRYRQADASCELEFAQGLE--FKLKFSEDQWAVTPGQSAVL 353

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y  D      LGGGII  S
Sbjct: 354 YDGDV----CLGGGIIEQS 368


>gi|323700751|ref|ZP_08112663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. ND132]
 gi|323460683|gb|EGB16548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans ND132]
          Length = 345

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 168/365 (46%), Gaps = 26/365 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VA+SGG+DS +  ALLK  G  ++ V         A +   +  AG         C
Sbjct: 1   MTIAVAVSGGMDSLLALALLKERGEPLLAVHGHFLPPSPAWETVTTGLAG--------AC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  +  D    F + VI PF + Y AG TP PC  CN  +KF  L    R LGA+ 
Sbjct: 53  AVLGVPFHALDLHASFDDRVIKPFVAEYKAGLTPNPCAMCNPRMKFGVLFDAARNLGAER 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+       +D  + R++ R  D  +DQSYFL     ++L    FPL    K  V
Sbjct: 113 LATGHYVSM-----EDRAQGRMLVRGADQSKDQSYFLSMVPVEKLRLAEFPLARTLKRDV 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
             +    GL    K++SQ+ICFV    Y   +      +   G  V  +G+++G H G+ 
Sbjct: 168 PAVLAAHGLTPPLKAESQEICFVPDDDYQHFLTS-RGDMPGPGPAVLPDGRVVGGHQGLW 226

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T GQRRGLG+A  EPL+V+  D   + +IVGP+E L        ++N +         
Sbjct: 227 RHTQGQRRGLGIAWSEPLYVLEKDVPGNTLIVGPKEFLAAKGCVAGQVNLM-------CP 279

Query: 321 VDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           V+ +     V+ R  Q   P  V+     +Y DF +       GQ    Y        VL
Sbjct: 280 VESWPGTVLVQTRYRQKAKPARVRLTGGRLYFDFLEPHTRPTPGQVAAVYDESGT---VL 336

Query: 379 GGGII 383
           GGG+I
Sbjct: 337 GGGVI 341


>gi|308491228|ref|XP_003107805.1| hypothetical protein CRE_12780 [Caenorhabditis remanei]
 gi|308249752|gb|EFO93704.1| hypothetical protein CRE_12780 [Caenorhabditis remanei]
          Length = 378

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 25/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDS+V A LLKR G+DVIGV +  ++S++      +C   +D  DAR VCD
Sbjct: 5   RVVIGMSGGVDSAVSAFLLKRRGFDVIGVHMVNWDSQEEGT--SNCPRSKDESDARNVCD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V + F  +Y  G T +P +DCN  +KFS    V ++   AD 
Sbjct: 63  KLNIPFHTVNFVKEYWNDVFLRFLENYKMGRTVVPDIDCNHFIKFSAFHKVAQERFDADF 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY  +    GD  + R       +    D  +DQ++FL   TQ+QL    FPLG +
Sbjct: 123 IATGHYATTSF--GDFQQSRNASEEIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSL 180

Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQIL 253
           +K  V+ +A + G  ++A K +S  ICFV + K F   + ++  I  + G IV  NG+ +
Sbjct: 181 QKTEVKRIAEQEGFHEVAKKPESMGICFVGKKKRFS--EFLDEYIEPKSGKIVLKNGKKI 238

Query: 254 GRHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306
           G H+GI  +TIG+R   G  + E      FV  ++  +  ++        +L   R  + 
Sbjct: 239 GNHHGIHQFTIGKRIN-GTYLEERSHFGFFVSEINSETGDIVACEGSHHPNLYATRFLIN 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             +W+ +           +   +I+ +  PV   V+ +D+ + V         A GQ CV
Sbjct: 298 RPSWISNSDDPLKSHPPSEILCRIQRTHPPVSCLVEYSDENLSVIPRIPLRATAPGQMCV 357

Query: 367 FYTSDSNEARVLGGGII 383
           FYT+  NE   LGGG I
Sbjct: 358 FYTT-KNEC--LGGGEI 371


>gi|332168761|gb|AEE18016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 397

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 196/404 (48%), Gaps = 52/404 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V + 
Sbjct: 4   VVVGLSGGVDSSVTAHLLKEQGYNVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMLVAEK 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D  E++R  ++      Y  G TP P V CNR +KF   + +   LGAD +A
Sbjct: 63  LGIPFQTVDLSEQYRERIVNYMFKEYEMGRTPNPDVLCNREIKFDVFMKIALSLGADYVA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY + +  +  DGK    +    D  +DQSYFL   +Q+QL    FP+G ++K  VR+
Sbjct: 123 TGHYCQ-KTSIEVDGKTMYQLKAGADDNKDQSYFLCQLSQEQLAKTLFPIGHLQKPKVRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE----------------- 242
           +A E  L  A K DSQ +CF+ + +  D ++   +   G+ +E                 
Sbjct: 182 IALEQDLVTAGKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEVMEDTIPEVAGGMEASN 241

Query: 243 ----GDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288
                D+ +L          G+++G+H G   +TIGQR+GL V    EPLFV+  D + +
Sbjct: 242 AFAKADLENLVKKPTYSVAEGKVVGKHQGAHYFTIGQRKGLAVGGTVEPLFVIDTDVDEN 301

Query: 289 RVIVGPRESLEVHRIYLR--------EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340
            +  G  ++   HR   R        EI+W+ + L   AV +  +   +IR  Q      
Sbjct: 302 VIYTGQGKN---HRGLYRKGLFVKEEEIHWIREDL-TLAVDETMEVEARIRYRQPLEKAT 357

Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + R + G+YV F+  +  +A GQ   ++  +      LG G+IS
Sbjct: 358 LYRVEGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397


>gi|311105115|ref|YP_003977968.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759804|gb|ADP15253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter xylosoxidans A8]
          Length = 372

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 184/383 (48%), Gaps = 30/383 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ K  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ D
Sbjct: 4   KSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     
Sbjct: 61  AASVADLVGVEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMA 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA+ +ATGHY R R      G  +  + + +D  +DQSYFL    Q QL    FPLG++
Sbjct: 121 LGAEHIATGHYARVREVPAVGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTMFPLGEI 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILG 254
            K  VR +A E+GL  A K DS  ICF+ +  + + + R    +  E G I+   GQ +G
Sbjct: 181 HKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGPIMTPEGQKVG 237

Query: 255 RHNGIINYTIGQR----------RGLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVH 301
           RH G+  YT+GQR          R       E  +V    L++N   V+ G     L   
Sbjct: 238 RHEGLSFYTLGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSG 297

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVA 360
            +  ++ +W+  G    A   G     K R  Q      +    DG + + F + +  V 
Sbjct: 298 ELRAQDASWVA-GHAPAAGTYG----AKTRYRQADAACRLDGAVDGTFSLGFTEPQWAVT 352

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ+ V Y  +      LGGGII
Sbjct: 353 PGQSAVLYDGEV----CLGGGII 371


>gi|150025823|ref|YP_001296649.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Flavobacterium psychrophilum JIP02/86]
 gi|205816862|sp|A6H0G9|MNMA_FLAPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149772364|emb|CAL43842.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 395

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 202/402 (50%), Gaps = 48/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LL+  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLQEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  ++++  ++    S Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDLSQQYQEKIVDYMFSEYKKGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +  +  DGK    +   +D  +DQSYFL   +Q+QL    FP+G++ K  VR
Sbjct: 122 ATGHYCR-KGEIEVDGKPVYQLLAGVDDNKDQSYFLCQLSQEQLAKSLFPIGELTKPQVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV---------------QQGKYFDV--------VKRIN-- 236
           ++A ++ L  A+K DSQ +CF+               ++G  F+V         ++IN  
Sbjct: 181 EIATKIELVTAEKKDSQGLCFIGKVRLPEFLQQQLKPKEGLIFEVDATNQIYNQEKINFD 240

Query: 237 ---AGIALEGDIVHLN---GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
                +A E   +       +++G+H G   +TIGQR+GL V    E LF++  +  ++ 
Sbjct: 241 SVQEKLAFEAKDIQYTPEVAKVVGKHQGAHYFTIGQRKGLNVGGTKEALFIISTNVETNA 300

Query: 290 VIVG---PRESLEVHRIYLR--EINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQ 342
           +  G       L    +++   EI+W+   L   A+ +G   +   +IR  Q+     + 
Sbjct: 301 IYTGQGHKHPGLFKKALFVTNDEIHWIRPDL---ALTNGQTIQVMARIRYRQELQKATLH 357

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++G+YV+FE  +  +  GQ   ++  D     ++G G+IS
Sbjct: 358 QFENGLYVEFETPQSAITQGQFVSWHIGD----ELIGSGVIS 395


>gi|153807264|ref|ZP_01959932.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185]
 gi|149130384|gb|EDM21594.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185]
          Length = 365

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 183/384 (47%), Gaps = 37/384 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    ++         + + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGST---------EYLEDARS 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAEHLGIRHITYDAREVFNKQIIEYFVQEYMAGRTPVPCTLCNNYLKWPLLAELADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R ++ + D       +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 115 FYIATGHYVR-KVKLEDT----YYITSAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFV-------------QQGKYFDVVKRINAGIALEGD 244
             R LA E G   +A K DS  +CF              +  + F    +  + I   G 
Sbjct: 170 EARALAAERGFRKVATKKDSLGVCFCPMDYRSFLKNWLDKNDQLFTAHGQKWSEIVRRGR 229

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            V   G  +  H G   YTIGQRRGLG+ +  P+FV  +    + +++ P +SLE   ++
Sbjct: 230 FVDETGHFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKDIFPEKNEIVLAPLQSLEKTEMW 289

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           L   N +     E+ V+      VKIR   Q+         +  +++   +    +A GQ
Sbjct: 290 LDNWNLIN----ENRVLGCSDIIVKIRYRKQENHGTVTVTPEHLLHIQLHEPLTAIAPGQ 345

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
           A  FY  D     +LGGGII  ++
Sbjct: 346 AAAFYKDDL----LLGGGIIVKAR 365


>gi|195867812|ref|ZP_03079812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660509|gb|EDX53766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 350

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/285 (37%), Positives = 156/285 (54%), Gaps = 21/285 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-------NSRKASKRKGSCCAGQDVY 74
           RVV+ +SGGVDSSV A LLK+ GY+VIG+ +  +       N+R++ K+   C +  D  
Sbjct: 8   RVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELDYQ 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V   I +  Y  ++ + + N V   F S Y    TP P + CN+ +KF   L+  +
Sbjct: 68  DAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAK 127

Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L AD +A GHY + +            + +  D+ +DQ+YFL    Q QL +  FP+G
Sbjct: 128 NELKADYIAMGHYAKVK-----HTNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFPIG 182

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL-NG 250
           D+ K+ VR +A+E GL  A+K DS  ICF+  +  KYF      N      G+IV++ N 
Sbjct: 183 DLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYF----LENYIPNQPGEIVNIVNN 238

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP 294
           QI+G H G + YTIGQR+GL +  M E +FV   D N   + V P
Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSP 283


>gi|121606705|ref|YP_984034.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas naphthalenivorans
           CJ2]
 gi|205816918|sp|A1VTY5|MNMA_POLNA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120595674|gb|ABM39113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 394

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 187/397 (47%), Gaps = 40/397 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK     R+VV +SGGVDS+V A LLK+ G++VIG+ ++ +     S+    C +  D 
Sbjct: 1   MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE---FCSSNIDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +KF   L   
Sbjct: 58  VDAAAVADVIGIEIEHVNFAANYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY R R    ++      + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 118 MRLGAEKIATGHYARVRQ---NEATGLHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K  VR +A E+GL  A K DS  ICF+ +  + D + R  A     G + +  G+IL
Sbjct: 175 ELHKTEVRRIADEIGLPNARKKDSTGICFIGERPFRDFLNRYIA--KAPGPVKNDQGRIL 232

Query: 254 GRHNGIINYTIGQRRGL---------------------GVAMGEPLFVVY--LDKNSSRV 290
           G H G+  YT+GQR+GL                     GV   EP FV    +D N+  V
Sbjct: 233 GEHVGLSFYTLGQRQGLGIGGVKARGADLKAAQARGQRGVGEHEPWFVARKDMDSNTLWV 292

Query: 291 IVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349
           + G     L+   +  ++ +W+         +       + R + D     V     G  
Sbjct: 293 VQGHDHPWLQSTLLNAQDCSWVAG---SAPALGAMAAKTRYRQA-DAACELVSATAGGCE 348

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           + F  ++  V  GQ+ V Y  +      LGGG+I+ S
Sbjct: 349 LAFLDAQWAVTPGQSAVLYQGEV----CLGGGVIASS 381


>gi|33597091|ref|NP_884734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella parapertussis 12822]
 gi|81423061|sp|Q7U375|MNMA_BORPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33566542|emb|CAE37798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella parapertussis]
          Length = 371

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 185/384 (48%), Gaps = 28/384 (7%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  NP +  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD
Sbjct: 1   MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L  
Sbjct: 58  LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGA+ +ATGHY R R      G R +++ + +D  +DQSYFL    Q QL    FPL
Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGPRHQLL-KALDDTKDQSYFLHRLNQAQLARTLFPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A E+GL  A K DS  ICF+ +  + + + R     +  G I+   GQ 
Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234

Query: 253 LGRHNGIINYTIGQR------------RGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299
           +G H+G+  YT+GQR            R  G A         L +N   V+ G     L 
Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
             ++  ++ +W+     E      +    + R   D      Q   +   + FE+++  V
Sbjct: 295 SAQLQAQDASWIAG---EPPAAGAYGAKTRYRQV-DAACRLDQAGGERFALAFEQAQWAV 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQ+ V Y  +      LGGGII
Sbjct: 351 TPGQSAVLYDGEV----CLGGGII 370


>gi|218887924|ref|YP_002437245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226704770|sp|B8DRE0|MNMA_DESVM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218758878|gb|ACL09777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 351

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 177/366 (48%), Gaps = 16/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ VA+SGG DS     LL   G DV G+  +    R A +  G+    + +     +C
Sbjct: 1   MKIAVALSGGTDSLFALLLLLEQGQDVFGLHARFLPPR-ADQPSGNPDPAEAIGA---MC 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  +  D  + F  AV+ PF   Y  G TP PC  CN T+KF  LL   R LGA  
Sbjct: 57  ARLGVDFHAVDLADAFEEAVVAPFIEEYVVGRTPNPCARCNATMKFGLLLDAARALGAAR 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+R   +     +    + R  D  +DQSYFL    + +L    FPLG+ +KE V
Sbjct: 117 LATGHYVRQLRHP----QWGMTLQRGADPAKDQSYFLSLVDRARLEQAVFPLGNWRKEQV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           +    +  +     S+SQ+ICFV    Y   ++     +   G IV + G+ +G H G+ 
Sbjct: 173 KAELVKRNIVPPLPSESQEICFVPGDDYRAFLRDRQVRLPGPGPIVTMRGRKIGSHKGLW 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT GQRRGLG+A  EPL+VV  D  ++ ++VG RE L        ++N L D     A 
Sbjct: 233 QYTEGQRRGLGIAWEEPLYVVSKDMENNVLLVGGREHLAARGCLTEDVNLLVDPADWPAE 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           +      V+ R  Q P P  V   D G+ V F + +   A GQ    Y +   E  VL G
Sbjct: 293 IS-----VRTRYRQAPQPARVTVGDTGMAVRFREPQTPPARGQVAAVYDA---EGHVLAG 344

Query: 381 GIISGS 386
           G+I G 
Sbjct: 345 GVILGP 350


>gi|268536380|ref|XP_002633325.1| Hypothetical protein CBG06062 [Caenorhabditis briggsae]
          Length = 377

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDS+V A LLK+ G+DV+G+ +  ++S++      +C   +D  DAR VC+
Sbjct: 5   RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMINWDSQEEGS--STCPRSKDEADARNVCN 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V + F  +Y  G T +P +DCN ++KF     V ++   AD 
Sbjct: 63  RLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFDAFHKVAQETFDADF 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY  +    GD  + R+      +    D  +DQ++FL   TQ+QL    FPLG +
Sbjct: 123 IATGHYATTSF--GDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSL 180

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQIL 253
           +K  V+ +A + G   +  K +S  ICF+ + K F     ++  I  + G IV  +G+ +
Sbjct: 181 QKSEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDF--LDEYIEPKPGRIVLKDGKQI 238

Query: 254 GRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIV--GPRES-LEVHRIYLRE 307
           G+H+GI  +TIG+R   + L        FV  +  ++  V+   G   S L   R  +  
Sbjct: 239 GKHHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGSHHSDLYATRFLINR 298

Query: 308 INWL--GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            NW+   D L E   +   K   +I+ +  PVP  V++++  + V+ +      + GQ C
Sbjct: 299 PNWIPSSDPLEE---ISPSKILCRIQRTHPPVPCKVEKSEHYLSVEPKIPLRATSPGQMC 355

Query: 366 VFYTSDSNEARVLGGGII 383
           VFYT+   E   LGGG I
Sbjct: 356 VFYTT---ENECLGGGEI 370


>gi|162447421|ref|YP_001620553.1| tRNA-specific 2-thiouridylase MnmA [Acholeplasma laidlawii PG-8A]
 gi|205810979|sp|A9NFP7|MNMA_ACHLI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161985528|gb|ABX81177.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Acholeplasma laidlawii PG-8A]
          Length = 375

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 191/387 (49%), Gaps = 38/387 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDVY 74
           +V++ +SGGVDSSV A +L + GYDV  V ++ ++S      +G       +C   +D  
Sbjct: 4   KVLIGLSGGVDSSVAALILLQQGYDVEAVFMRNWDSATNMDFRGNPTLYDETCEQEKDYQ 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA +V + + +  +  D+   + + V   F   Y    TP P V CN  +KF   +  + 
Sbjct: 64  DALKVANKLGIKLHRVDFIHEYWDRVFSYFIDEYEKNRTPNPDVLCNNEIKFKAFIDYSE 123

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +   D +A GHY +   + GD+ K    + R +D  +DQ+YFL     +QL ++ FP+G+
Sbjct: 124 KFKPDYIAMGHYAQID-HTGDEPK----LIRAVDSNKDQTYFLSQLKTEQLRNVLFPIGN 178

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR +A+E  L  ADK DS  ICF+ +  + + +  +N   A EGD+  L+G  + 
Sbjct: 179 LPKSEVRRIAKEHDLATADKKDSTGICFIGERHFNEFL--LNYLPAKEGDMRRLDGTFIK 236

Query: 255 RHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           RH G++NYTIGQR+GLG+       +  FVV  D +++ + V P      L      + E
Sbjct: 237 RHFGLMNYTIGQRKGLGIGGTTDTTDAWFVVGKDLSTNTLYVEPGFEHPYLYSDEALITE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366
           + W G      A  DG K   K R  Q+   V ++  DD  +  F   ++  V  GQ C 
Sbjct: 297 VKWRG------AKRDG-KFTAKFRYRQEDQDVEIKWIDDETFKVFYPQKIRAVTPGQVCA 349

Query: 367 FYTSDSNEARVLGGGIIS-----GSKR 388
            Y  +      +G G IS     G KR
Sbjct: 350 IYEDEV----CVGSGFISVVYNEGEKR 372


>gi|332181403|gb|AEE17091.1| tRNA-specific 2-thiouridylase mnmA [Treponema brennaborense DSM
           12168]
          Length = 452

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 143/458 (31%), Positives = 203/458 (44%), Gaps = 99/458 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKRKGSC 67
           DL        V V MSGGVDS++VA LLK  G +VIGVT+  +N        A   + SC
Sbjct: 5   DLPLPEPGTTVAVGMSGGVDSTLVAILLKERGCNVIGVTMSSWNDDMPLPHSADGVRSSC 64

Query: 68  CAGQ---DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D+      C   ++ ++V D  E +R  V+  F + Y AG TP PC+ CN  V
Sbjct: 65  YGPDEQVDIAQCESFCKEHDIEYHVIDVRETYRKEVLDYFKAEYRAGRTPNPCIRCNPRV 124

Query: 125 KFSDLLSVTRQLGA--DVLATGHY---IRSRLYVGD------------------------ 155
           KF  LL     LG   D   TGHY   +R    V D                        
Sbjct: 125 KFGALLEGITALGIRFDYFCTGHYARLVRPETSVADLYREHVVPGFAAAPGFDAVPAEFR 184

Query: 156 ----------------DGKRRRIMCRPM------DLERDQSYFLFATTQQQLCDLRFPLG 193
                           D     +  RP+      D  +DQ+YFL       L  +RFPL 
Sbjct: 185 SAEAGVEPPSTVSAVPDTSALPVSERPVMIAYASDSTKDQTYFLCRVPSHVLEKVRFPLA 244

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K+ V  +A+E  L  A +S+SQD  FV +  YFDV+   +   ++ GDIV+L+G+++
Sbjct: 245 GFTKKEVFAMAQERRLAAASRSESQD--FVPEA-YFDVI--FSDKPSVPGDIVNLDGKVI 299

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           GRH GI +YT+GQRRGLGV+   PL+V  +D   +RV++   + L    +   +  W G+
Sbjct: 300 GRHRGIEHYTVGQRRGLGVSSTRPLYVHSIDAVHNRVVLAENDDLLCGALLADDWVWAGN 359

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--------------------------RNDDG 347
             +  A+   F   VKIR +  PV   V+                          R   G
Sbjct: 360 --YVPAL--PFTGEVKIRLASKPVEAVVEPYAGVHTTACAAGTGDSDAARDSDAAREPSG 415

Query: 348 VY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           V+ + F+  +  VA GQ+ V Y +      ++GGGIIS
Sbjct: 416 VFKITFKNPQRAVAPGQSAVVYLN----GVIVGGGIIS 449


>gi|332043246|gb|EGI79443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lacinutrix algicola 5H-3-7-4]
          Length = 396

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 193/400 (48%), Gaps = 44/400 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V +
Sbjct: 4   RVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVAE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 63  KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALDLGADYV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  + +  DG+    +    D  +DQSYFL   +Q+QL    FP+G+++K  VR
Sbjct: 123 ATGHYCRKGI-IEKDGEEVYQLLSGKDNNKDQSYFLCQLSQEQLAKALFPIGELQKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242
           ++A +  L  ADK DSQ +CF+ + +  D ++   +   G+ +E                
Sbjct: 182 EIAAKADLITADKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEIPKDNANYSNTQESFN 241

Query: 243 ------------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSR 289
                        +    +G+I+G+H G   +T GQR+GL V    EPLFV+  D   + 
Sbjct: 242 SKTEELKYLSRKAEYAVADGEIVGKHQGAHYFTKGQRKGLSVGGKVEPLFVIDTDVEENV 301

Query: 290 VIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           +  G       L    +++   E++W+   L      +  +   +IR  Q      + + 
Sbjct: 302 IYTGQGKGHPGLYKKALFVSNDELHWVRPDLALKP-DETLQVLARIRYRQTLENATLHKV 360

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + G+YV+FE  +  +  GQ   +Y  D     ++G G+IS
Sbjct: 361 ESGLYVEFENLQSAITEGQFVAWYLED----ELVGSGVIS 396


>gi|300741847|ref|ZP_07071868.1| tRNA methyl transferase [Rothia dentocariosa M567]
 gi|300381032|gb|EFJ77594.1| tRNA methyl transferase [Rothia dentocariosa M567]
          Length = 377

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 172/370 (46%), Gaps = 44/370 (11%)

Query: 47  VIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPF 104
           ++GV L L +    + R GS  CC  +D  DARRVC  + +  +V+D+ ERF+  V+  F
Sbjct: 1   MVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARRVCAQLGIPFFVWDFSERFKEDVVDDF 59

Query: 105 ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC 164
            + Y AG TP PC+ CN  +KF+ LL     LG D + TGHY  +R+   DDG R   + 
Sbjct: 60  IAEYEAGRTPNPCMRCNEKIKFAALLERAVSLGFDAVVTGHY--ARVITNDDGNRE--LH 115

Query: 165 RPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFV 223
           R  D  +DQSY L   T +QL    FPL     K  VR  A   G  +A K DS DICF+
Sbjct: 116 RAADWAKDQSYVLGVLTHEQLKHAWFPLATTPSKAEVRAEAERRGFSVAKKPDSYDICFI 175

Query: 224 QQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPL 278
            +G   D    +   I +  G I   +G ++G H G   +T+GQR+GL +      G+P 
Sbjct: 176 PEG---DTRAWLGEHIQMRPGMIKDTSGNVVGEHPGAQGFTVGQRKGLALGTPAPDGKPR 232

Query: 279 FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV-----------DGFKCF 327
           FV+ +   ++ VIVG RE L +  I      W G  + E               + F   
Sbjct: 233 FVLEIRPKTNEVIVGSRELLSIDEIRGIRATWAGIPVPEAEHFLAQEPKLGVRSETFDVT 292

Query: 328 VKIRSSQDPV--PVFVQRNDDG-----------VYVDFEKSEVGVASGQACVFYTSDSNE 374
            ++R+  DPV     ++  +D              V       GVA GQ  V Y      
Sbjct: 293 AQVRAHADPVRGTAHLEWAEDTDAETPGKLRVETVVRLHDGLFGVAPGQTMVLYQG---- 348

Query: 375 ARVLGGGIIS 384
            RVLG   I+
Sbjct: 349 TRVLGQSTIA 358


>gi|313887530|ref|ZP_07821213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846408|gb|EFR33786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 353

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 178/373 (47%), Gaps = 37/373 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LLK  GYDV  V +     R  ++  G C A +D  D   VC 
Sbjct: 6   KVILGMSGGVDSSVSAILLKEAGYDVTAVFM-----RNWAEDDGMCTAREDYIDVVSVCS 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + ++  ++E+ +R+ V   F S Y  G TP P V CN  +KF   L       AD +
Sbjct: 61  QLGIKYFTVNFEKEYRDRVFSYFLSEYKKGRTPNPDVMCNTEIKFKAFLDYAMDFDADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY R++   G     +  + + +D  +DQSYFL     + L    FP+GD+ K+ VR
Sbjct: 121 AMGHYARTKKVHG-----KTYLLKGLDNNKDQSYFLSRVKSEALEKTLFPVGDLTKDEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +  L  A K DS  ICF+ +  + + + +        G IV   G++LG H+G+++
Sbjct: 176 RIAEKYELSTASKKDSTGICFIGERDFNEFLDQF--LFTKPGKIVDEKGKVLGEHSGLMH 233

Query: 262 YT---IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREINW 310
           YT          GV  GEP FV   D  ++ +IV          ++  EV  I+     W
Sbjct: 234 YTIGQRRGIGIGGVGSGEPFFVADKDLKNNLLIVAQGINNPVLYKDEFEVEDIF-----W 288

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           + +       VD     VKIR         +++ +D   V  +K   GV  GQ CVFY  
Sbjct: 289 ITEN--PSLPVD---LSVKIRYRASDQAATLEKQNDKYVVKLKKPLKGVTPGQVCVFYQG 343

Query: 371 DSNEARVLGGGII 383
           D      LG GII
Sbjct: 344 DV----CLGSGII 352


>gi|257452732|ref|ZP_05618031.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|257466593|ref|ZP_05630904.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917748|ref|ZP_07913988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059273|ref|ZP_07923758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684949|gb|EFS21784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313691623|gb|EFS28458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 345

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 190/365 (52%), Gaps = 25/365 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDS+V A LL+++GYDVI V   ++ + +           ++V D++ + +
Sbjct: 4   KVILGMSGGVDSAVAAYLLQKNGYDVIAVHFSVHKTERTQ---------EEVKDSQTIAN 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++  Y +  E+ F+  +I  + +    G TP PC  C+ +VKF  L     + GA  +
Sbjct: 55  QFSIPLYSYCLEKEFQEKIISYYLTEIEKGRTPSPCPLCDDSVKFHLLFQEAEKHGAKYV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY        ++  +  ++     + +DQ Y L+  + ++L  + FPL  ++K  VR
Sbjct: 115 ATGHYASIS---SNNVFKTSLLEANHHIHKDQCYMLYRLSSEKLKRILFPLSSLEKSEVR 171

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR++GL +++K DSQ ICF  +G Y   +K+  A    +G+ +   G ILG+H+G   
Sbjct: 172 EIARKIGLFVSEKKDSQGICFAPEG-YQAFLKKHLAHKIQKGNFIDEKGNILGKHSGYPL 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV- 320
           YT+GQRRGLG+ M E  F+  ++ +++ + +G  ++L      L +   L + +F   + 
Sbjct: 231 YTLGQRRGLGIQMKEISFITKINPDTNEITLGKFDNL------LEDKVILENTIFHLPLE 284

Query: 321 -VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +       + R S       V+  +  V   + +     ASGQ  V +     E  V+G
Sbjct: 285 TLKNMTLLARPRFSSTGFLGKVREENGVVTFHYFEKNAHNASGQHLVLFY----ENYVVG 340

Query: 380 GGIIS 384
           GGII+
Sbjct: 341 GGIIA 345


>gi|293400445|ref|ZP_06644590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305471|gb|EFE46715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 391

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 196/380 (51%), Gaps = 35/380 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ +SGGVDS+V A +LK  GYDV    ++ ++S   +   G+       C   QD  
Sbjct: 8   KVLLGLSGGVDSAVAAYILKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDYL 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V D + +     D+ + + + V   F   Y  G TP P + CN+ +KF   +   R
Sbjct: 68  DAKAVADKLGLPLLRVDFVKEYWDNVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMKYAR 127

Query: 135 QLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +LG D+LATGHY +   + LY          M R  D  +DQ+YFL   +Q  L    FP
Sbjct: 128 KLGFDILATGHYAQVEHTPLY--------SRMLRGADSNKDQTYFLCQVSQDALAHALFP 179

Query: 192 LGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           +G++ K  VR++A+++ L+ +A K DS  ICF+ +  + + ++  N   + +GDIV ++ 
Sbjct: 180 IGNLNKAEVREIAQKLELESVATKKDSTGICFIGERNFKEFLQ--NYLPSQDGDIVDIHS 237

Query: 251 -QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVG-PRESLEVHRIYL 305
            +++GRH G++ YTIGQR+GLG+   + P FVV  D  KN   V  G  ++ L      +
Sbjct: 238 LEVIGRHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNGNEKDWLYSTSCIV 297

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
             +NWL     E+     + C  K R  Q    + +Q  D+  V V + +    V  GQ 
Sbjct: 298 SGVNWLRPHKPENE----YACTAKFRYRQQDHEISLQFIDETTVLVCYPQGVASVTCGQE 353

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D  E   LGGG+I 
Sbjct: 354 AVFY--DGQEC--LGGGVIE 369


>gi|205822290|sp|Q122U9|MNMA_POLSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 401

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 187/398 (46%), Gaps = 42/398 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK     R+VV +SGGVDS+V A LLK+ G++VIG+ ++ +     S+    C +  D 
Sbjct: 1   MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE---YCSSNIDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +KF   L   
Sbjct: 58  VDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY R R    ++      + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 118 MRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLFPVG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K  VR +A E+GL  A K DS  ICF+ +  + D + R  A     G I +  G++L
Sbjct: 175 ELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIA--KAPGPIKNDRGRVL 232

Query: 254 GRHNGIINYTIGQRRGL---------------------GVAMGEPLFVVY--LDKNSSRV 290
           G+H G+  YT+GQR+GL                     GV   EP FV    LD N+  V
Sbjct: 233 GKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFVARKDLDTNTLWV 292

Query: 291 IVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGV 348
           + G     L+   +  ++ +W+       A   G     K R  Q D             
Sbjct: 293 VQGHDHPWLQSTVLSAQDCSWVAG----TAPAAGLMA-AKTRYRQVDATCELRSATTANC 347

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            + F + +  V  GQ+ V Y  D      LGGG+I+ S
Sbjct: 348 ELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 381


>gi|167571198|ref|ZP_02364072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia oklahomensis C6786]
          Length = 400

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 181/407 (44%), Gaps = 58/407 (14%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGARTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVREIAEQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D   N+  V+ G      + R +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQ------------------------------DPVPVFVQRNDDGV 348
              DG +C  K R  Q                               P  V    + +  
Sbjct: 287 PPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAADASGERF 346

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII--SGSKRSDAVE 393
            + F++ +  V  GQ+ V Y  D      LGGGII  + + R DA  
Sbjct: 347 SLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAH 389


>gi|82703361|ref|YP_412927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
 gi|123544047|sp|Q2Y6T6|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 363

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 187/375 (49%), Gaps = 27/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +      +    C + QD+ DA  V D
Sbjct: 5   RVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNWEDDDTDEY---CSSRQDLIDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   ++  V   F + Y AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  VIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLDHAAGLGADYI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R     DG  +  + +  D  +DQSYFL+   Q QL    FP+G + K  VR
Sbjct: 122 ATGHYAQVR---NTDGVFQ--LLKGEDGTKDQSYFLYRLNQAQLSRALFPIGHLYKRDVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R        G+I   +G ++GRH G++ 
Sbjct: 177 SIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPNDP--GEIRTPSGDVMGRHAGLMY 234

Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGD 313
           YTIGQR+     G     GEP FV   D K +   +V   +  ++ R  L   ++ W+  
Sbjct: 235 YTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVSG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
            +     V       KIR  Q   P  +   D +   ++F + +  VA GQ+ V Y S  
Sbjct: 295 KMPRCNWVYA----AKIRYRQSDAPCSITYLDCNKCKIEFAQPQWAVAPGQSVVVYESKV 350

Query: 373 NEARVLGGGIISGSK 387
                LGGG+I+ ++
Sbjct: 351 ----CLGGGVIAATQ 361


>gi|309363500|emb|CAP26308.2| hypothetical protein CBG_06062 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 201/392 (51%), Gaps = 40/392 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--------------SC 67
           RVV+ MSGGVDS+V A LLK+ G+DV+G+ +  ++ ++ S++K               +C
Sbjct: 5   RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMVTHSRQRESEKKNISQINWDSQEEGSSTC 64

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              +D  DAR VC+ +N+  +  ++ + + N V + F  +Y  G T +P +DCN ++KF 
Sbjct: 65  PRSKDEADARNVCNRLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFD 124

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATT 181
               V ++   AD +ATGHY  +    GD  + R+      +    D  +DQ++FL   T
Sbjct: 125 AFHKVAQETFDADFIATGHYATTSF--GDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVT 182

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           Q+QL    FPLG ++K  V+ +A + G   +  K +S  ICF+ + K F     ++  I 
Sbjct: 183 QEQLKRAMFPLGSLQKSEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDF--LDEYIE 240

Query: 241 LE-GDIVHLNGQILGRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIV--GP 294
            + G IV  +G+ +G+H+GI  +TIG+R   + L        FV  +  ++  V+   G 
Sbjct: 241 PKPGRIVLKDGKQIGKHHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGS 300

Query: 295 RES-LEVHRIYLREINWL--GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351
             S L   R  +   NW+   D L E   +   K   +I+ +  PVP  V++++  + V+
Sbjct: 301 HHSDLYATRFLINRPNWIPSSDPLEE---ISPSKILCRIQRTHPPVPCKVEKSEHYLSVE 357

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +      + GQ CVFYT+   E   LGGG I
Sbjct: 358 PKIPLRATSPGQMCVFYTT---ENECLGGGEI 386


>gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
 gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
          Length = 489

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 183/377 (48%), Gaps = 30/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C   +D+  A+ VC
Sbjct: 78  LRVAVLVSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAVC 137

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    + Y  G TP P V CN  +KF   L     LG D 
Sbjct: 138 DKIDVPLEVVHLSDEYWNYVVSHMINEYRCGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        ++ +   I+    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 198 IASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQLRRLLFPLGCITKDEV 257

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA +MGL    + DSQ ICF+ + K+ + V+R      GI LE +    +G  LG+H 
Sbjct: 258 RRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEMEGIILEAE----SGDYLGKHR 313

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWL--- 311
           G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   +NW    
Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDSS 372

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQD-----PVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           G G  E       KC  K+R S +      +    + N+D + V   + + G+A+GQ   
Sbjct: 373 GPGNNEQ-----LKC--KVRHSPEFHDCTLIKEHTEENEDALVVHLSEDDQGLAAGQFAA 425

Query: 367 FYTSDSNEARVLGGGII 383
           FY+  S     LG GII
Sbjct: 426 FYSEHS----CLGSGII 438


>gi|198274021|ref|ZP_03206553.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135]
 gi|198273099|gb|EDY97368.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135]
          Length = 375

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 29/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DSS    +L+  GY+V+GVT++ ++   AS          +V +A+ 
Sbjct: 4   REKRVLVGMSGGIDSSAACIMLQEQGYEVVGVTMRTWDV--ASHFTPGNDQPNEVIEAQE 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H+V D    FR  ++  F   Y  G TP PCV CN   K   L     +   
Sbjct: 62  LAARLGIEHHVADVRTEFRQVIVQYFIDEYMRGRTPNPCVMCNPLFKERILCEWADKCNC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY + +     D    R +    D  +DQSYFL+   Q+ L  + FPLG M K 
Sbjct: 122 AWIATGHYCQLK-----DLNGYRYILTGDDPLKDQSYFLWKLPQEILKRMMFPLGGMTKA 176

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQIL 253
           SVRD     G +  A   +S +ICF+++  Y + +K     I+  I   G  V   G  L
Sbjct: 177 SVRDYLASKGFEAKARGGESMEICFIEK-DYREFLKEHCPDIDERIG-PGWFVDNKGLKL 234

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + L+ + + + + N    
Sbjct: 235 GQHKGFAYYTIGQRKGLEIALGKPAYVLKINPAKNTVMLGDADQLKTYYMLVEDYN---- 290

Query: 314 GLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                ++ +   C    V+IR     +P  V   D+G + V FE+    +  GQ+ VFY 
Sbjct: 291 ---VASLAELLNCKELSVRIRYRSRSIPCRVILLDNGQLLVRFEQEASAITPGQSAVFYE 347

Query: 370 SDSNEARVLGGGIISGSK 387
            +    RVLGGG I+  +
Sbjct: 348 GN----RVLGGGFIASQQ 361


>gi|313147999|ref|ZP_07810192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
 gi|313136766|gb|EFR54126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
          Length = 364

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 187/380 (49%), Gaps = 38/380 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  E FR  ++  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LATRLGIEHITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G        +    D ++DQS+FL+   Q  L  +  P+G+M K 
Sbjct: 115 FYLATGHYVRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKP 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKR--INAG------IALE---GDIV 246
             R  A   G + ++ K DS  +CF     Y   +K+   +AG      I  E   G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ VI+ P +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
           + N     +  ++ + G+    V+IR  +      V    +G +++   +    +A GQA
Sbjct: 289 DWN-----IINESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQA 343

Query: 365 CVFYTSDSNEARVLGGGIIS 384
             FY     +  +LGGGII+
Sbjct: 344 AAFY----KDGLLLGGGIIT 359


>gi|317477931|ref|ZP_07937114.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|316905845|gb|EFV27616.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 363

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 181/370 (48%), Gaps = 30/370 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ MSGG DSSV A  L+  GY+V GVT + Y   +A    G       + DAR +
Sbjct: 17  DKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY---EAGDETGY------LEDARAL 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR+ +I  F   Y  G TP+PC  CN  +K++ L  +  + G  
Sbjct: 68  ALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKGIY 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY+R  L  G     +  +    D ++DQ++FL+   Q  L  +  P+GD+ K  
Sbjct: 128 WISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITKNE 182

Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRH 256
            R  A E G   +A K DS  +CF     Y   +KR      L  +G  V   G  LG H
Sbjct: 183 ARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLGWH 241

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GL 315
            G   YT+GQRRGLG+ + + +FV      S+ V++ P  SL       R+  WLGD  L
Sbjct: 242 EGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSL------YRQEMWLGDWNL 295

Query: 316 FEDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
            E++ V G  +  VKIR  +      V    +G+  V   +    +A GQA  FY  D  
Sbjct: 296 VENSRVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKDGY 355

Query: 374 EARVLGGGII 383
              +LGGGII
Sbjct: 356 ---LLGGGII 362


>gi|14195277|sp|Q9JTJ9|MNMA_NEIMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 187/383 (48%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+       GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+ V + F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKEGHYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQSTDKP 362


>gi|300774572|ref|ZP_07084435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506387|gb|EFK37522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
          Length = 395

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 199/407 (48%), Gaps = 55/407 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV +SGGVDSSV A LL++ G++V+ + ++ +N    +  +  C   +D  DA  V 
Sbjct: 1   MKIVVGLSGGVDSSVTAYLLQQQGHEVVALFMRNWNDASVT-LEDECPWIEDSNDALMVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E ++  ++    + Y  G TP P V CNR VKF   +     LGAD 
Sbjct: 60  QKLGIPFQVIDMSELYKERIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTAMSLGADK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++GK    +    D  +DQSYFL   +Q QL    FP+G++ K  V
Sbjct: 120 VATGHYARVTSTFDENGKEIFHLLAGKDNNKDQSYFLCQLSQDQLSKALFPIGELTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQ---GKYFDVVKRINAGIALEGDIVHL--------- 248
           R++A+E+GL  ADK DSQ +CF+ +    ++     + N     EG+IV +         
Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPQFLQQQLKPN-----EGEIVEIFKDSPLFSE 234

Query: 249 ------------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYL 283
                                   +G+++G+H G   +TIGQ +GLG+    E  F++  
Sbjct: 235 EKPEFSSKEEELEYLSRKINYKKSDGKVIGKHQGAQFFTIGQSKGLGIGGHKESCFIISR 294

Query: 284 DKNSSRVIVGPRESLE-VHRIYLR----EINWLGDGL-FEDAVVDGFKCFVKIRSSQDPV 337
           D  ++ + VG       +H+  L+    E++W+ + +  ++   +  +   + R  Q   
Sbjct: 295 DMENNILFVGEGSHFPGLHKKALKIDNSELHWVREDMKLQNG--ESMEVMARFRYRQPLQ 352

Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              + + ++  Y++F++ +  +A GQ   +Y  +     ++G G+IS
Sbjct: 353 KATLYQFENAFYIEFDELQSAIAEGQFASWYIDE----ELIGSGVIS 395


>gi|160888582|ref|ZP_02069585.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492]
 gi|156861896|gb|EDO55327.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492]
          Length = 350

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 180/369 (48%), Gaps = 28/369 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ MSGG DSSV A  L+  GY+V GVT + Y   +A    G       + DAR +
Sbjct: 4   DKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY---EAGDETGY------LEDARAL 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR+ +I  F   Y  G TP+PC  CN  +K++ L  +  + G  
Sbjct: 55  ALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKGIY 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY+R  L  G     +  +    D ++DQ++FL+   Q  L  +  P+GD+ K  
Sbjct: 115 WISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITKNE 169

Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRH 256
            R  A E G   +A K DS  +CF     Y   +KR      L  +G  V   G  LG H
Sbjct: 170 ARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLGWH 228

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YT+GQRRGLG+ + + +FV      S+ V++ P  SL    ++L E N     L 
Sbjct: 229 EGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYKQEMWLGEWN-----LV 283

Query: 317 EDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374
           E++ V G  +  VKIR  +      V    +G+  V   +    +A GQA  FY  D   
Sbjct: 284 ENSRVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKDGY- 342

Query: 375 ARVLGGGII 383
             +LGGGII
Sbjct: 343 --LLGGGII 349


>gi|218768524|ref|YP_002343036.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis Z2491]
 gi|11277501|pir||H81798 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) NMA1744 [imported] - Neisseria meningitidis
           (strain Z2491 serogroup A)
 gi|121052532|emb|CAM08872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis Z2491]
          Length = 383

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 187/382 (48%), Gaps = 26/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 17  MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+       GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+ V + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKEGHYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDGDI----CLGGGIIQSTDK 377


>gi|303232364|ref|ZP_07319057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae PB189-T1-4]
 gi|302481548|gb|EFL44615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae PB189-T1-4]
          Length = 392

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 189/393 (48%), Gaps = 40/393 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK   V + MSGGVDS+  AALLK  GY V  V ++ ++         +C    D+ DA 
Sbjct: 10  PKGATVYLGMSGGVDSACSAALLKEWGYTVHAVYMRNWSRDLPGF---TCRWADDLADAE 66

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RVC T+ ++  V+D E+ +++ V+     +YA G TP P V CN+T+KF          G
Sbjct: 67  RVCVTLGLTLDVWDCEQEYKSTVVDYLIDAYARGYTPNPDVMCNQTIKFGTFAEKAFAHG 126

Query: 138 ADVLATGHYIR----------------SRLYVGDDGKRRRI-----MCRPMDLERDQSYF 176
           AD +ATGHY +                +     D G          + R  D  +DQ+YF
Sbjct: 127 ADFIATGHYAQVDAGALAGATADVADANVASSADSGNADATFPVSPLIRAADEHKDQTYF 186

Query: 177 LFATTQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
           L+     ++    FP+G++  K+ VR+L RE GL +  K DS  ICFV  G+       +
Sbjct: 187 LWRVPAARIAKTIFPIGNIPSKKQVRELCREFGLGVEQKPDSDGICFV--GEVGIRTFLL 244

Query: 236 NAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
           +      GDIV    G +LG+H+G   YTIGQRRGL +  G   +VV  D   + V V  
Sbjct: 245 DTLSQKAGDIVEWETGTVLGQHDGAFLYTIGQRRGLNLGGGPARYVVRTDTARNIVYVSS 304

Query: 295 R---ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351
               E L    + L   +WLG      A   G +  V++R +   VP  V+   +   ++
Sbjct: 305 NIACEELHCTSLALERTHWLG-----AAPTPGARYCVRLRHTGALVPCCVRYAGEQPTLE 359

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F++  + +A GQ+ V Y    +  RV GGG I+
Sbjct: 360 FDEPIMRIAPGQSAVLY----DGRRVCGGGFIA 388


>gi|89890355|ref|ZP_01201865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517270|gb|EAS19927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 392

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 196/399 (49%), Gaps = 45/399 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  G++VIG+ ++ ++    +     C   +D  DA  V D
Sbjct: 3   KVVVGLSGGVDSSVAAYLLKEQGHEVIGLFMKNWHDDTVTISD-ECPWLEDSNDAMLVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++      YA G TP P V CNR +KF   + +  +LGAD +
Sbjct: 62  KLGIPFQTVDLSEQYKERIVDYMFDEYARGRTPNPDVLCNREIKFDVFMDIALELGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    +  DGK    +    DL +DQSYFL   +Q+QL    FP+G ++K  VR
Sbjct: 122 ATGHYCQKTTTM-IDGKEIHHLIGGADLNKDQSYFLCQVSQEQLARTIFPIGHLQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-----------INAGIALEGDIV---- 246
           ++A    L  A K DSQ +CF+ + +  D +++           I A ++++  +V    
Sbjct: 181 EIAASQDLITAGKKDSQGLCFIGKVRLPDFLQQQLKPKTGDIIEIPAQVSMDKAVVVNDE 240

Query: 247 ----------HLN---GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV 292
                     H     G+ LG H G   +T GQR+GL V     PLFV+  D  S+ + V
Sbjct: 241 DALVTLSRKRHYQAHEGKKLGTHQGAHYFTRGQRKGLAVGGTPLPLFVIETDVESNTIFV 300

Query: 293 GP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRND 345
           G  ++   ++R    I   E++W+ + L   A+  G K     +IR  Q      +   D
Sbjct: 301 GQGKQHPGLYRRGLFIDKSELHWIREDL---ALKSGEKMDVMARIRYRQTLEKAVLHIVD 357

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            G Y+ F+  +  ++ GQ   +Y  +      LG G+IS
Sbjct: 358 QGAYLIFDTPQSAISPGQFAAWYQDN----ECLGSGVIS 392


>gi|107021774|ref|YP_620101.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia AU
           1054]
 gi|116688721|ref|YP_834344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia HI2424]
 gi|123072405|sp|Q1BZ27|MNMA_BURCA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811383|sp|A0K4M4|MNMA_BURCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|105891963|gb|ABF75128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116646810|gb|ABK07451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 391

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 179/384 (46%), Gaps = 37/384 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 234

Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+     G     GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362
               +   DGF C  K R  Q D   VF                   + F+ ++  V  G
Sbjct: 295 ----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEVRFSLAFDDAQWAVTPG 350

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q+ V Y  +      LGGGII  +
Sbjct: 351 QSAVLYDGEI----CLGGGIIESA 370


>gi|206561667|ref|YP_002232432.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia J2315]
 gi|229486335|sp|B4EE50|MNMA_BURCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|198037709|emb|CAR53652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia J2315]
          Length = 391

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 179/384 (46%), Gaps = 37/384 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D
Sbjct: 5   RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+++
Sbjct: 62  LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR
Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+  
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 234

Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313
           YT GQR+     G     GEP FV   D   N+  V+ G      + R +    ++W+  
Sbjct: 235 YTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362
               +   DGF C  K R  Q D   VF                   + F+ ++  V  G
Sbjct: 295 ----EPPADGFACGAKTRYRQADAACVFGLAATGAEAAGPAGEARFSLAFDDAQWAVTPG 350

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q+ V Y  +      LGGGII  +
Sbjct: 351 QSAVLYDGEI----CLGGGIIESA 370


>gi|119899062|ref|YP_934275.1| tRNA-specific 2-thiouridylase MnmA [Azoarcus sp. BH72]
 gi|205812510|sp|A1K983|MNMA_AZOSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119671475|emb|CAL95388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Azoarcus sp. BH72]
          Length = 365

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 186/381 (48%), Gaps = 35/381 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VVV MSGGVDSSV A LLK+ GY+V G+ ++ +      +    C   QD+ D   VC
Sbjct: 1   MKVVVGMSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDDDE---YCSTRQDLVDVASVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +   V ++   +++ V   F   Y AG TP P + CN  +KF   L    QLGA+ 
Sbjct: 58  DVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDILCNSEIKFRCFLDHAMQLGAER 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R ++ +DG+    + +  D  +DQSYFL+   Q QL    FPLG + K  V
Sbjct: 118 IATGHYAQVREWI-NDGRSEFQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGGLYKREV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A   GL +A K DS  ICF+ +  + + + R        G+I  L + ++LG H G+
Sbjct: 177 RKIAEAAGLHVATKKDSTGICFIGERPFREFLMRYLP--TKPGEIRCLDDDRVLGEHQGL 234

Query: 260 INYTIGQRRGLGV----------AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLR 306
           + +TIGQR+GL +             E  +V   D   N   V+ G    +L   R+   
Sbjct: 235 MYHTIGQRKGLHIGGIKGNQDEAGEHEAWYVAKKDVKANVLYVVQGHDHPALLKDRLLAT 294

Query: 307 EINWLGDGLFEDAVVDGFKCFV---KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
           ++NW+       A  D    +V   K R     +P  +    +G   + F   +  +  G
Sbjct: 295 DLNWI-------AGRDPRTHWVYTAKPRYRTADMPCEIDALGEGRAEIAFATPQWALTPG 347

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ V Y S       LGGG+I
Sbjct: 348 QSVVVYESKV----CLGGGVI 364


>gi|121607299|ref|YP_995106.1| tRNA-specific 2-thiouridylase MnmA [Verminephrobacter eiseniae
           EF01-2]
 gi|166991125|sp|A1WEN1|MNMA_VEREI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|121551939|gb|ABM56088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verminephrobacter eiseniae EF01-2]
          Length = 370

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 186/391 (47%), Gaps = 40/391 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  RVVV +SGGVDS+V A LL++ G++V+G+ ++ +         G C +G D 
Sbjct: 1   MTASPK-QRVVVGLSGGVDSAVTAYLLRQQGHEVVGIFMKNWED---DDDGGYCPSGTDF 56

Query: 74  YDARRVCDTINVS----HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            DA  V D I +     ++  DY+ER    V   F   Y AG TP P V CN  +KF   
Sbjct: 57  VDAAAVADVIGIEIEHVNFAADYKER----VFAEFLREYQAGRTPNPDVLCNAEIKFKAF 112

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L    +LGA+ +ATGHY   R    +    R  + +  D  +DQSYFL    Q+QL    
Sbjct: 113 LDHALRLGAEKIATGHYAGVRR---NPASGRFELLKGADPAKDQSYFLHRLDQRQLSRTL 169

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG ++K  VR LA ++GL  A K DS  ICF+ +  + + + R        G I    
Sbjct: 170 FPLGALRKTEVRRLAEDIGLPNARKKDSTGICFIGERPFREFLNRYIG--PAPGPIEDDR 227

Query: 250 GQILGRHNGIINYTIGQRRGLGV------------AMGEPLFVVY--LDKNSSRVIVGPR 295
           G++LG+H+G+  YT+GQR+GLG+                P FV    L  N+ RV+ G  
Sbjct: 228 GRVLGQHSGLSFYTLGQRQGLGIGGLKEQGAQRGGGAHAPWFVARKELATNTLRVVQGHD 287

Query: 296 ESLEVHR-IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK 354
               + R +  ++  W+       A   G          QD           G  + F +
Sbjct: 288 HPWLLSRALEAQDARWICGA----APAPGRYAAKTRYRQQDASCTMASAGQAGFRLHFSE 343

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            +  V  GQ+ V Y  D N    LGGG+I+G
Sbjct: 344 EQWAVTPGQSAVLY--DGNV--CLGGGVIAG 370


>gi|86132339|ref|ZP_01050934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dokdonia donghaensis MED134]
 gi|85817258|gb|EAQ38441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dokdonia donghaensis MED134]
          Length = 397

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 196/405 (48%), Gaps = 54/405 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V + 
Sbjct: 4   VVVGLSGGVDSSVTAYLLKEQGYNVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMLVAEK 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D  E+++  ++      Y  G TP P V CNR +KF   + +   LGAD +A
Sbjct: 63  LGIPFQTVDLSEQYQERIVDYMFREYEMGRTPNPDVLCNREIKFDVFMKIALSLGADYVA 122

Query: 143 TGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           TGHY  +S + V  DGK    +    D  +DQSYFL   +Q QL    FP+G ++K  VR
Sbjct: 123 TGHYCQKSSIEV--DGKTVYQLIAGADNNKDQSYFLCQLSQDQLAKTLFPIGHLQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242
           D+A +  L  A K DSQ +CF+ + +  D ++   +   G+ +E                
Sbjct: 181 DIALQQELVTAGKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEVPETVIPEVAGGDKAS 240

Query: 243 -----GDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
                 ++ +L          G+++G+H G   +TIGQR+GLGV    EPLFV+  D   
Sbjct: 241 NAFAKAELENLVKKPSYTVAEGRVVGKHQGAHYFTIGQRKGLGVGGTVEPLFVIDTDVKD 300

Query: 288 SRVIVGPRESLEVHRIYLR--------EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
           + +  G  ++   HR   R        EI+W+ + L   AV +  +   +IR  Q     
Sbjct: 301 NVIYTGQGKN---HRGLYRKGLFVKEEEIHWIREDL-TLAVDETMQVEARIRYRQPLEKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + R D G+YV F+  +  +A GQ   ++  +      LG G+IS
Sbjct: 357 TLYRVDGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397


>gi|84624072|ref|YP_451444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123521874|sp|Q2P2Q7|MNMA_XANOM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84368012|dbj|BAE69170.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 378

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 183/374 (48%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            +VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +          RR  + R  D ++DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVA-----HRGRRWRLLRGADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V   R+S  +   +L+  + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  D 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLY--DG 347

Query: 373 NEARVLGGGIISGS 386
            E   LGG +I+ +
Sbjct: 348 KE--CLGGAVIAAT 359


>gi|168038711|ref|XP_001771843.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676794|gb|EDQ63272.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 421

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 182/360 (50%), Gaps = 21/360 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDSS+ A LL+R GY+V GV ++ +++R  +   G C A QD  DA+RVC+ 
Sbjct: 40  VAVGISGGVDSSIAALLLQRQGYEVFGVYMRNWDARDEAG-GGHCSADQDYEDAQRVCEH 98

Query: 83  I-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +  +  +  DY++++   V   F   +A G TP P +DCN+ +KF  LL    Q+GAD  
Sbjct: 99  LAGIKLHHLDYQKKYWTQVFENFTQKFAMGLTPNPDLDCNQHIKFDALLENALQMGADKF 158

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ATGHY R SR   G   +    + R +D ++DQSYFL +        + FPLG + K  V
Sbjct: 159 ATGHYARLSRPQCGGPVQ----LLRGIDEDKDQSYFLASVGSAAFERVLFPLGGLTKAQV 214

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI-LGRHNG 258
           RDLA   GL  A K  S  ICFV + K+ D +      + +E G  V ++G   LG H G
Sbjct: 215 RDLALSEGLVTATKRSSAGICFVGRRKFRDFISEY---VEMEPGPFVCVDGNTHLGLHTG 271

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGL 315
           I  YT GQR G+   + +P +VV  D  ++ V V       +L        +  W+  G 
Sbjct: 272 IAAYTHGQRAGIS-GVPKPFYVVGKDVQNNVVYVAMGADHPALFCTSAVAGDPFWI-SGS 329

Query: 316 FEDAVVDG--FKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               + DG    C  K R  Q  +   V    + + V + FE+    +  GQA V Y  D
Sbjct: 330 PPKQLQDGQPLTCMFKARYRQSLERCTVCFLDSKNEVAIRFEEPTRAITPGQALVLYDGD 389


>gi|218281120|ref|ZP_03487655.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
 gi|218217634|gb|EEC91172.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
          Length = 385

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 188/378 (49%), Gaps = 29/378 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDV 73
           M+V+V +SGGVDS+V A LLK+ GYDV    ++ ++S   +   G       +C   QD 
Sbjct: 1   MKVLVGLSGGVDSAVAAYLLKKQGYDVTCCFMRNWDSFANNDIAGNPTIKDDTCPQEQDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V + +++     D+ E + + V   F S Y  G TP P + CN+ +KF       
Sbjct: 61  LDALAVANHLDLPLQRVDFIEEYWDNVFKTFLSEYEKGRTPNPDILCNKYIKFDSFFEYA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G D +ATGHY  +    G        + R  D  +DQ+YFL    + ++    FPL 
Sbjct: 121 MKQGFDKVATGHYASNAEENG-----FTYLTRAKDQNKDQTYFLCQVEKSKIAKTIFPLA 175

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251
            ++K  +R +A E+ L+ +A K DS  ICF+ +  +   +   N   + +GDIV +N  +
Sbjct: 176 HLEKPEIRQIAAELNLESVATKKDSTGICFIGERNFRQFLS--NYLPSKDGDIVDVNTSK 233

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVI-VGPRESLEVHRIYLRE 307
           ++ RH G++ YTIGQR+GL +   + P FVV  D  KN   V     R+ L      ++ 
Sbjct: 234 VIARHVGVLYYTIGQRKGLNIDHEKGPWFVVGKDVVKNILYVCRTDQRDLLYSDSCIVKG 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           INW+   L E       KC  K R  Q    + ++R DD  V V + ++   V  GQ  V
Sbjct: 294 INWILPSLEEIPT----KCTCKFRYRQKDQDIEIERLDDTSVLVKYPQTIASVTEGQEAV 349

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D    + +GGG+I 
Sbjct: 350 FYDGD----KCIGGGVIE 363


>gi|251772733|gb|EES53295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospirillum ferrodiazotrophum]
          Length = 372

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 187/378 (49%), Gaps = 33/378 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKG--SCCAGQDVY 74
           ++  +V+ MSGGVDS+V A LLK++GYDV GV L+L+  +S +ASK  G  +CC    V 
Sbjct: 3   RNKSIVIGMSGGVDSAVSAWLLKKEGYDVTGVILRLWGKDSSEASKGWGERTCC---HVP 59

Query: 75  DARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               +C  I N+ + + D E  F++ V+  F S+Y  GETP PC  CN  VK   L    
Sbjct: 60  MVEYLCQKILNIPYAIVDAESAFKSDVVDSFKSAYRTGETPNPCTSCNEKVKLPLLRRWA 119

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   +ATGHY     +   +      +    DL +DQSYFL  T      +  FP+G
Sbjct: 120 EENGIPKVATGHYT---YWKRSEDFNVSGLAMAHDLAKDQSYFLSRTPDLCPENTVFPVG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH------ 247
            M K  VR+LARE G  +    ++Q++CFV +       KR+   ++ E D  H      
Sbjct: 177 RMSKPQVRELAREAGFPVEGLLENQEVCFVSE-------KRVTEFLSHEIDQDHRGPWTV 229

Query: 248 --LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
             + G+ LG     I  T GQR+GL VA G  L+V  +D    ++ +  R  L      +
Sbjct: 230 RTIAGEALGTIPTGIGLTRGQRKGLSVAGGRRLYVHTVDIQERQLWLSDRSDLFESAFTV 289

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           +    +   +FE       + FV+ RS+  PVP  V+  ++G +   E+   G+  GQ  
Sbjct: 290 KSPMGM---MFEKKGKKLGELFVRFRSTMSPVPCRVEDAEEGRF-RLERPHDGIVEGQVA 345

Query: 366 VFYTSDSNEARVLGGGII 383
            FY     E  ++G G+I
Sbjct: 346 AFY---DKENILVGSGLI 360


>gi|270294933|ref|ZP_06201134.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|270274180|gb|EFA20041.1| tRNA methyl transferase [Bacteroides sp. D20]
          Length = 350

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 180/369 (48%), Gaps = 28/369 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ MSGG DSSV A  L+  GY+V GVT + Y   +A    G       + DAR +
Sbjct: 4   DKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY---EAGDETGY------LEDARAL 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR+ +I  F   Y  G TP+PC  CN  +K++ L  +  + G  
Sbjct: 55  ALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKGIY 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY+R  L  G     +  +    D ++DQ++FL+   Q  L  +  P+GD+ K  
Sbjct: 115 WISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITKNE 169

Query: 200 VRDLAREMGL-DIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            R  A E G   +A K DS  +CF     + F   +     +  +G  V   G  LG H 
Sbjct: 170 ARSYAAERGFGQVAAKKDSIGVCFCPLDYRSFLKCEVPETLLPGKGRFVDEKGNFLGWHE 229

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           G   YT+GQRRGLG+ + + +FV      S+ V++ P  SL       R+  WLGD  L 
Sbjct: 230 GYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSL------YRQEMWLGDWNLV 283

Query: 317 EDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374
           E++ V G  +  VKIR  +      V    +G+  V   +    +A GQA  FY  D   
Sbjct: 284 ENSRVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD--- 340

Query: 375 ARVLGGGII 383
             +LGGGII
Sbjct: 341 GYLLGGGII 349


>gi|295134761|ref|YP_003585437.1| tRNA methyl transferase [Zunongwangia profunda SM-A87]
 gi|294982776|gb|ADF53241.1| tRNA methyl transferase [Zunongwangia profunda SM-A87]
          Length = 395

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 195/400 (48%), Gaps = 44/400 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   KVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMIVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDLSEQYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R +  +  +G++   +    D  +DQSYFL   TQ+QL    FP+G+++K  VR
Sbjct: 122 ATGHYCR-KGEIEKNGEKIYQLLSGKDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR------------------INAGIA-LE 242
            +A E  L  ADK DSQ +CF+ + +  D +++                     GI   E
Sbjct: 181 RIAAEQELVTADKKDSQGLCFIGKVRLPDFLQQKLKPKEGNIVEIKPDSETYQTGIPEFE 240

Query: 243 GDIVHL------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
             I  L            +G+++G+H G   +T GQR+GL V    EPLFV+  D   + 
Sbjct: 241 SKIEELKFLSQKYQYQPQDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVEDNV 300

Query: 290 VIVGP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           +  G  ++   ++R    I   E++W+   L      +  +   +IR  Q      + + 
Sbjct: 301 IYTGQGKKHPGIYRKGLFINEDEVHWVRKDL-SLKPGESLELKARIRYRQPLQEATLYQT 359

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + G+YV F+  +  +  GQ   +Y  +     +LG G+IS
Sbjct: 360 EQGMYVVFKTPQASITEGQFVAWYDGE----ELLGSGVIS 395


>gi|298528464|ref|ZP_07015868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512116|gb|EFI36018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 344

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 179/367 (48%), Gaps = 28/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGG+DS     +L+ +G+DV+ +  + +        K            + +C
Sbjct: 1   MRIAVAVSGGLDSLASLVMLREEGHDVLALHARFFPRLDEHLEK----------RLKGIC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ V  +V   ++ F   VI PF   Y  G TP PC  CN  +KF  LL    +LGA  
Sbjct: 51  TSLGVEMHVTLLQDEFAARVIDPFVQDYLDGLTPNPCARCNMRIKFGLLLDRALELGASA 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY  + +     G    ++ R +D  +DQSYFL     ++L   +FP+    K S+
Sbjct: 111 LATGHY--AGIKKNSSGP---VLMRALDQAKDQSYFLCLVPPRRLARAKFPMYHHFKSSM 165

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258
           ++  +   + +  + +S +ICF+  G Y D +  +   +   L G IV  +G+ LGRH G
Sbjct: 166 QEFLQNRNITVPAREESNEICFIP-GDYRDFIAGRLEKSHEPLPGPIVDSSGRTLGRHQG 224

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQRRGLG+A   PL+V+  D  S+ ++VG RE L       R++N     + E+
Sbjct: 225 LWRYTPGQRRGLGIAFKHPLYVLRKDLASNTLVVGAREELGAGEFQARDVN-----ILEE 279

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA-SGQACVFYTSDSNEARV 377
                    V+ R  Q   P  V+     + V + K E G+   GQ    Y   S + +V
Sbjct: 280 PRKWPLDLLVQTRYRQKARPAEVELWGQRMRVRY-KGEPGLPVPGQVAAVY---SPKGQV 335

Query: 378 LGGGIIS 384
           L GGII 
Sbjct: 336 LAGGIIQ 342


>gi|91085987|ref|XP_972131.1| PREDICTED: similar to tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tribolium castaneum]
          Length = 417

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 189/381 (49%), Gaps = 40/381 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDS+V A LLK+ GYD+ GV +Q ++    +  KG C A  D  DA  VCD
Sbjct: 6   KVVVGISGGVDSAVAALLLKKRGYDIQGVFMQNWD---IADEKGYCSADADYKDAALVCD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++     ++ + + N V       Y  G TP P V CNR +KF+      R +LGAD 
Sbjct: 63  KLDIKLTHVNFVKHYWNEVFSNLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 122

Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGHY R+        Y  + G R   +   +D  +DQ++FL    Q+ L    FPLGD
Sbjct: 123 IATGHYARTSFGSYLEHYNPEKGVR---LLNAVDWFKDQTFFLCQVNQEALQRTMFPLGD 179

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           + K  V+ +ARE GL+ IA K +S  ICF+   K+ D ++         GD V ++  ++
Sbjct: 180 LMKPEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDDKP--GDFVDVDTAKV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REIN 309
           +G+HNG+  +T+GQR  L  +   P FV    +DKN   V+ G +  L    I L  E +
Sbjct: 238 VGQHNGVHQWTLGQRARLH-SYESPYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPH 296

Query: 310 W-------LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           W       L +G+ E        C  K + ++  V   V +   G+ +   + +  +  G
Sbjct: 297 WIHSQPPDLQNGVLE--------CDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPG 348

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q  V     S +   LGG  I
Sbjct: 349 QFAVL----SKDGECLGGARI 365


>gi|315223915|ref|ZP_07865760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314946087|gb|EFS98091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 397

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 192/405 (47%), Gaps = 52/405 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISD-ECPWLEDSNDALLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +  +GK+   +    D  +DQSYFL   +Q QL    FP+G+++K  VR
Sbjct: 122 ATGHYCRKE-EIEINGKKIYRLLSGKDENKDQSYFLCQLSQDQLSKALFPIGELQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQ------------QGKYFDVVKRINAGI---------- 239
            +A+   L  ADK DSQ +CFV             Q K  D+++  N             
Sbjct: 181 AIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQPKQGDIIEISNDWKGYTDFDMPRT 240

Query: 240 --ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
               EG++ +L         +G+ +G H G   +T GQR+GL V    EPLF++  D   
Sbjct: 241 FETYEGELEYLSQRFVYQPEDGKKIGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETDIEK 300

Query: 288 SRVIVGPRESLEVHRIYLREI--------NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
           + +  G   +   HR   R          +W+ + L    V +  +  V+IR  Q     
Sbjct: 301 NIIYTGQGHT---HRGLFRSALFIAAPDEHWIREDL-ALKVYESKEFMVRIRYRQPLQKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + ++G+Y+ F + +  V  GQ   +Y  D     ++G G+IS
Sbjct: 357 VLYKVENGLYIHFSEPQSAVTEGQFAAWYNGD----ELVGSGVIS 397


>gi|118595168|ref|ZP_01552515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophilales bacterium HTCC2181]
 gi|118440946|gb|EAV47573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophilales bacterium HTCC2181]
          Length = 369

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 186/383 (48%), Gaps = 44/383 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VV +SGGVDS+V A LLK  GYDV  + ++ +      +    C + QD+ DA  
Sbjct: 2   KGESIVVGLSGGVDSAVTAWLLKDQGYDVTALFMKNWEDDDEDEY---CSSKQDLLDAIA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I V   V ++ + ++  V   F      G TP P + CN  +KF   L+    LGA
Sbjct: 59  VAEKIGVDIEVVNFAKEYKEKVFSLFIDGLKTGITPNPDILCNSEIKFDAFLNHALALGA 118

Query: 139 DVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           D +ATGHY +         L  GDDG             +DQSYFL    Q QL    FP
Sbjct: 119 DKIATGHYAKVMERDGLFYLLKGDDG------------SKDQSYFLHRLNQDQLSKSVFP 166

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLN- 249
           LG + K+ VR++AR+  L I D+ DS  ICF+ +  + + +   IN      G IV  + 
Sbjct: 167 LGGLLKKDVREIARKNSLHIHDRKDSTGICFIGERPFAEFIGGYINKD---PGSIVSADG 223

Query: 250 GQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVH 301
           G++LG H+G+  YTIGQR+GL +       G+P FV+  D   ++++VG       L   
Sbjct: 224 GEVLGTHDGLNFYTIGQRQGLKIGGVQKGNGKPWFVISKDFKKNQLVVGQGHDHPLLFND 283

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVA 360
            +  +E++W+G+ L  +  V       K R  Q   P  +   ND    V F + +  V 
Sbjct: 284 GLIAKEMHWIGEKLPRENWV----YAAKTRYRQPDAPCEIDDINDVSATVLFGQKQWAVT 339

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ+ V Y S+      LGGG I
Sbjct: 340 PGQSIVIYESNV----CLGGGFI 358


>gi|291514578|emb|CBK63788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alistipes shahii WAL 8301]
          Length = 399

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 190/404 (47%), Gaps = 47/404 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ +SGGVDSSV A LLK  G++V+G+ +  ++    +  +G C    D   A  V  
Sbjct: 3   RVVIGLSGGVDSSVAAWLLKEQGHEVVGLFMINWHDTTGTL-EGDCPWHDDRVFAELVAR 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +V D    +R  V+    + Y  G TP P V CNR +KF   L    +LGAD +
Sbjct: 62  KLDIELHVVDLSADYRTRVVDYMFAEYERGRTPNPDVLCNREIKFDVFLREALKLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DG+    +    D  +DQSYFL   +Q+QL    FP+G + K  VR
Sbjct: 122 ATGHYCRKAEETLPDGRTIHKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGGLLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFV---------------QQGKYFDVV----KRINAGIALE 242
            +A E GL  A + DSQ ICFV               ++G   +++    K +   +  E
Sbjct: 182 RIAEEQGLATAKRKDSQGICFVGKVDLPTFLQQKLAPKKGNIHEILPTWPKYVREEVPAE 241

Query: 243 GDIVH--------------LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
           G+                  +G+ +G HNG   YTIGQR+GLG+    E LF++  D   
Sbjct: 242 GEPTTGQLAALAEPWRYTVRDGKKIGEHNGAHYYTIGQRKGLGIGGRRESLFILATDTVQ 301

Query: 288 SRVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFV 341
           + + VG     P        I   EI+W+       A     F   ++ R       +FV
Sbjct: 302 NVIWVGEGDAHPGLWRPALHIAPGEIHWVNPARELTAGQSARFSVRIRYRQLLQGARLFV 361

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           +  D+G Y+ F++ + G+  GQ   +Y  D    +++G G+I G
Sbjct: 362 R--DEGAYLVFDRPQRGITPGQFAAWYDGD----QLVGSGVIEG 399


>gi|283852168|ref|ZP_06369441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. FW1012B]
 gi|283572394|gb|EFC20381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. FW1012B]
          Length = 357

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 171/366 (46%), Gaps = 24/366 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGG DS +   LL+ +G+DV+ V           +        Q        C
Sbjct: 1   MRLAVAVSGGADSLLSLGLLRAEGHDVVAVHAHFLPPDMKGQELARAIETQ--------C 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V     D    F   V+ PF ++YAAG+TP PC  CNR +KF  L+   R+LGAD 
Sbjct: 53  GRLGVPFAAVDLSREFGRQVVAPFIAAYAAGQTPNPCAACNRDMKFGLLMEAARELGADK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGH+  +RL   D G     + R  D  RDQSYFL    +  L    FPL   +K   
Sbjct: 113 LATGHF--ARLQETDRGP---ALFRGADDSRDQSYFLSLVPRDALARAVFPLARRRKADH 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
                 +GL      +S+++CFV    Y   ++   A +   G IV  +G  LG H G+ 
Sbjct: 168 PAALAALGLAPPLPKESREVCFVPGDDYRAFLEASGAALTGPGPIVLTDGTRLGTHQGLW 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD--GLFED 318
            +TIGQR+GLG+A  +PL+V+  D  ++ ++VG R  L+         N L D  G    
Sbjct: 228 RHTIGQRKGLGIAYADPLYVLGKDTAANTLVVGVRADLDATACRTGPANLLADPAGWPAT 287

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A V    C+ ++R    P P   V   D G+ + F+        GQ    Y +     RV
Sbjct: 288 ATVLAQTCY-RMR----PRPARAVLGPDGGLALTFDAPVARPTPGQVATVYDA---AGRV 339

Query: 378 LGGGII 383
           L GG++
Sbjct: 340 LAGGVL 345


>gi|160896253|ref|YP_001561835.1| tRNA-specific 2-thiouridylase MnmA [Delftia acidovorans SPH-1]
 gi|205816627|sp|A9BS40|MNMA_DELAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160361837|gb|ABX33450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Delftia acidovorans SPH-1]
          Length = 372

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 190/380 (50%), Gaps = 34/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V D
Sbjct: 5   RVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDFVDAAAVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ +
Sbjct: 62  VVGIEIEHVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++KK  VR
Sbjct: 122 ATGHYARVRQ---NPDTQLFELLKGLDPAKDQSYFLHRLNQAQLSRSMFPVGELKKTEVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260
            +A E+GL  A K DS  ICF+ +  + D + R    I+ E G+I+    + LG+H G+ 
Sbjct: 179 RIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRY---ISKEPGNILDDRNRKLGKHVGLS 235

Query: 261 NYTIGQRRGLGVAM------------GEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR 306
            YT+GQR GLG+               +P FV    LD N+ RV+ G      + +  L 
Sbjct: 236 FYTLGQRSGLGIGGVKEKGAPRGGGDHDPWFVARKELDTNTLRVVQGHDHPWLLSQSLLA 295

Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
            +++W+       A  +G     K R  Q   P  +     +G  +DF + +  V  GQ+
Sbjct: 296 DQVSWVAG----HAPAEGKAYGSKTRYRQPDSPALISGATPEGFRLDFPEPQWAVTPGQS 351

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D      LGGGII+
Sbjct: 352 AVLYDGDV----CLGGGIIA 367


>gi|262165401|ref|ZP_06033138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM223]
 gi|262025117|gb|EEY43785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM223]
          Length = 335

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 172/330 (52%), Gaps = 27/330 (8%)

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A +D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 18  CTAAEDLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKF 77

Query: 127 SDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L    + L AD +A GHY+R       +G++ + M R +D  +DQSYFL+  + +Q+
Sbjct: 78  KAFLEFADEVLDADYIAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQV 134

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD++K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I
Sbjct: 135 ARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKI 192

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPR 295
               G+++G H G++ +T+GQR+GL +     +  +P +V   DK+  R ++        
Sbjct: 193 ETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESNEQPWYVA--DKDLKRNVLIAVQGADH 250

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEK 354
             L+ H +   +++W+        + +  +C VK R  Q D     +  +DD + V F++
Sbjct: 251 PLLKSHGLVAAQLHWVD----RTPITEPLRCSVKTRYRQSDIACTIIPLSDDRIKVMFDE 306

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +V V  GQ+ VFY  +      LGGGII 
Sbjct: 307 PQVAVTPGQSAVFYQGEI----CLGGGIIE 332


>gi|284931128|gb|ADC31066.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. F]
          Length = 657

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 200/380 (52%), Gaps = 31/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASKRKGSCCAGQDV 73
           RVVVA+SGGVDS+V A LL++ GYDV+   +Q ++        S  A  +   C A QD 
Sbjct: 288 RVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHADDQIQGCDAKQDY 347

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+++C+ + +  Y F++ E++ N V +     Y  G TP P V CN+  KF   ++  
Sbjct: 348 EDAQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLCNQFGKFGWFINAL 407

Query: 134 R-QLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           R Q G ++ +A GHY  ++L   DD      +    D  +DQ+YFL    ++QL ++ FP
Sbjct: 408 RKQFGNNIKIAFGHY--AKLITKDD---EVFLVHTKDHNKDQTYFLTMLKKEQLKNIIFP 462

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250
           L ++ K +VR++A++  L +A+K DS  ICF+ +  +   +   N     +G I+ ++  
Sbjct: 463 LSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFLS--NYLAIKKGPIILIDEN 520

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYL 305
           + +G H+G+  YTIGQ R L V    E +FV   D N++ + V    S    L      L
Sbjct: 521 KKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCNKDYNNNTLYVCYESSKDQYLSSVSCEL 580

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQA 364
              NWL D   +D +++  K +++ R  Q       V  +DD V V + K ++GV  GQ 
Sbjct: 581 ENFNWLTDT--KDQLLNK-KLWIRFRHRQKLQECEIVSYHDDKVIVKYTK-QIGVTPGQY 636

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D N   V+GGG I+
Sbjct: 637 GVIY--DQN-LWVVGGGKIT 653


>gi|213962751|ref|ZP_03391012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sputigena Capno]
 gi|213954746|gb|EEB66067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sputigena Capno]
          Length = 397

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 194/406 (47%), Gaps = 54/406 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +  +GK+   +    D  +DQSYFL   +Q+QL    FP+G+++K  VR
Sbjct: 122 ATGHYCRKE-EIEINGKKIYRLLSGKDENKDQSYFLCQLSQEQLSKALFPIGELQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFV------------QQGKYFDVVKRIN--AGIALEGDIVH 247
            +A+   L  ADK DSQ +CFV             Q K  D+++  N   G A E D++ 
Sbjct: 181 AIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQPKQGDIIEIPNDWKGYA-EFDMLR 239

Query: 248 L--------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286
           L                    +G+ +G H G   +T GQR+GL V    EPLF++  D  
Sbjct: 240 LFETYEDELKYLSQRFVYQPEDGKKVGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETDIE 299

Query: 287 SSRVIVGPRESLEVHRIYLREI--------NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338
            + +  G   +   HR   R          +W+ + L    V +  +  V+IR  Q    
Sbjct: 300 KNIIYTGQGHT---HRGLFRSALFIATPDEHWIREDL-ALKVYESKEFMVRIRYRQPLQK 355

Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             + +  +G+Y+ F + +  +  GQ   +Y+ D     ++G G+IS
Sbjct: 356 AVLYKVKNGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397


>gi|74316869|ref|YP_314609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
 gi|123612137|sp|Q3SKH7|MNMA_THIDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|74056364|gb|AAZ96804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 358

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 184/370 (49%), Gaps = 24/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ GYDV+GV ++ ++    ++    C A QD  D   V D
Sbjct: 4   RVVVGLSGGVDSAVAAYLLKQQGYDVLGVFMKNWDDDDNTEH---CTARQDFLDVLAVAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     ++   ++  V   F + Y AG TP P V CN  +KF   L      GAD +
Sbjct: 61  VLGIEVEAVNFAAEYKERVFSYFLAEYQAGRTPNPDVLCNAEIKFKAFLDDAIARGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+      G D   R  + R  D  +DQSYFL+   Q QL    FPL  + K  VR
Sbjct: 121 ATGHYVGK----GHDTFGRAALLRARDANKDQSYFLYRLNQAQLSPALFPLARLPKPEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR +GL  A K DS  ICF+ +  + + ++R        GD+    G+++G+H G++ 
Sbjct: 177 EIARRIGLPNAAKKDSTGICFIGERNFREFLERYLP--RDPGDMTTPEGRVVGQHQGLMY 234

Query: 262 YTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+         P FV   D  ++ ++V        L+   +   +++W+  
Sbjct: 235 YTLGQRQGLGIGGQKGGSDAPWFVAAKDMATNTLVVVQGHDHPLLQRFGVGAGQLSWIA- 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           G+  D     +    + R + D         DD + + F+  +  V  GQ+ V Y  D  
Sbjct: 294 GVAPDPERP-YTAKTRYRQT-DAACHITTLYDDTLELVFDAPQWAVTPGQSVVLYDGDV- 350

Query: 374 EARVLGGGII 383
               LGGGII
Sbjct: 351 ---CLGGGII 357


>gi|326319478|ref|YP_004237150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376314|gb|ADX48583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 403

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 194/411 (47%), Gaps = 53/411 (12%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D 
Sbjct: 1   MTASPK-QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L   
Sbjct: 57  VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDG----------------------KRRRIMCRPMDLER 171
            ++GA+ +ATGHY R R    D G                        R  + + +D  +
Sbjct: 117 MRVGAEKIATGHYARVRRVAADPGAMSGRHDRMESHATACDSAQDPHWRYELLKGLDPAK 176

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231
           DQSYFL    Q QL    FP+G+++K  VR +A E+GL  A K DS  ICF+ +  + + 
Sbjct: 177 DQSYFLHRLNQAQLSRTLFPVGELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREF 236

Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV----------AMGE--PLF 279
           + R        G I+   G+ LG+H G+  YT+GQR+GLG+            GE  P F
Sbjct: 237 LNRYIQ--HAPGPILDDRGRKLGQHVGLSFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWF 294

Query: 280 VV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           V    +++N  RV+ G     L  H +   + +W+  G    A      C  K R  Q  
Sbjct: 295 VARKEVERNVLRVVQGHDHPWLLSHTLQATDASWVA-GRPPAAGA----CAAKTRYRQQD 349

Query: 337 VPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
               V   + G + + F +++  V  GQ+ V Y  +      LGGG+I+ +
Sbjct: 350 AACTVTPAEGGDFALAFPEAQWAVTPGQSAVLYDGEV----CLGGGVITAA 396


>gi|260062425|ref|YP_003195505.1| tRNA-specific 2-thiouridylase MnmA [Robiginitalea biformata
           HTCC2501]
 gi|88783988|gb|EAR15159.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Robiginitalea biformata HTCC2501]
          Length = 399

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 191/402 (47%), Gaps = 47/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK+ GY+VIG+ ++ ++    +  +  C    D  DA  V +
Sbjct: 6   KVVVGLSGGVDSSVTALLLKQQGYEVIGLFMKNWHDDSVTISR-ECPWLDDSNDALIVAE 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D    ++  ++      Y  G TP P V CNR +KF   L +   LGAD +
Sbjct: 65  KLGIPFQTVDLSAAYKERIVNYMFREYQQGRTPNPDVLCNREIKFDLFLKIAMDLGADFV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG+ R  +    D  +DQSYFL    Q+QL    FP+G ++K  VR
Sbjct: 125 ATGHYCRKDEATGPDGQVRYRLLAGADANKDQSYFLCQLNQEQLSRALFPIGHLQKSEVR 184

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248
            LA E GL  ADK DSQ +CF+ + +  + +++       EG IV +             
Sbjct: 185 ALAAENGLVTADKKDSQGLCFIGKVRLPEFLQQQLE--PREGRIVEIPATAPQYLREVPE 242

Query: 249 --------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
                               +G+ +G H G   +TIGQR+GL V    +PLFV+  D   
Sbjct: 243 FSNRREELAFYSEKPVYDPSDGRDVGLHQGAHYFTIGQRKGLDVGGTPDPLFVIQTDVAK 302

Query: 288 SRVIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + +  G  +S   ++R  L     E++W+   L  +      +   +IR  Q      + 
Sbjct: 303 NIIYTGQGKSHPGLYRRTLFVADDELHWVRPDLSLNP-DQTMEVQARIRYRQALQQATLY 361

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + + G+YVDF + +  +  GQ   +Y  D     ++G G+I+
Sbjct: 362 KIEGGLYVDFREPQSAITEGQFVAWYLGDE----LIGSGVIA 399


>gi|254672922|emb|CBA07279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha275]
          Length = 367

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 184/383 (48%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+       GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +     +    V F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYEGDV----CLGGGIIQSTDKP 362


>gi|254669809|emb|CBA04142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha153]
          Length = 367

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 183/380 (48%), Gaps = 24/380 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI-- 308
           G H G++ YT+GQR+       GEP FV    L KN   V+ G    L    +Y R +  
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVM 286

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V Y
Sbjct: 287 NDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKR 388
             D      LGGGII  + +
Sbjct: 346 EGDV----CLGGGIIQSTDK 361


>gi|167825759|ref|ZP_02457230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 9]
          Length = 352

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 156/324 (48%), Gaps = 22/324 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ 342
              DG +C  K R  Q   P  V+
Sbjct: 287 PPADGARCGAKTRYRQADAPCVVR 310


>gi|309378502|emb|CBX22855.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 383

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 186/382 (48%), Gaps = 26/382 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 17  MNTTSNPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+       GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +    +D+   + F++ +  V  GQ+ V
Sbjct: 301 VMNDLSFTLPERPKEGHYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D      LGGGII  + +
Sbjct: 360 LYDGDI----CLGGGIIQTTDK 377


>gi|304313061|ref|YP_003812659.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [gamma proteobacterium HdN1]
 gi|301798794|emb|CBL47027.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [gamma proteobacterium HdN1]
          Length = 387

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 199/397 (50%), Gaps = 41/397 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +PK  +V+V MSGGVDSSV A LL ++GY+V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   HPK--KVIVGMSGGVDSSVAAWLLLQEGYEVEGLFMKNWEEDDGTEY---CTALTDLADA 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V DT+ +  +  ++   + + V   F + Y  G TP P + CN+ +KF   L     L
Sbjct: 58  QQVADTLGIRLHTANFAAEYWDRVFEYFLAEYKGGRTPNPDILCNKEIKFRAFLDYALTL 117

Query: 137 GADVLATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GAD +ATGHY  R R    + G     +C+ +D  +DQSYFL A + +QL    FPLG M
Sbjct: 118 GADAIATGHYATRGRNTQTEGGGEIAELCKGVDSNKDQSYFLHAVSGKQLAKTLFPLGKM 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A+E G     K DS  ICF+ + ++ D +++     A  G IV  +G ++G 
Sbjct: 178 LKPEVRRIAKEQGFTNHAKKDSTGICFIGERRFRDFLQQYIP--AQPGQIVSESGAVVGE 235

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN- 309
           H G++ YTIGQR+G+G+     A   P +V++ D + +++++G  +  +  R++ R +N 
Sbjct: 236 HQGLMYYTIGQRQGIGIGGIKDADENPWYVLHKDLDKNQLLIG--QGNDHPRLFSRTLNA 293

Query: 310 ----WLGDGLF----------------EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349
               W+                     +   V        + +  +P     Q    G+ 
Sbjct: 294 SRIEWVSGKPPSLPLICTAKTRYRQPDQSCTVSAMPHNPSLNAGHEPF-AEAQGEPYGIS 352

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           V F++ +  V  GQ  VFY  D      LGGG I  +
Sbjct: 353 VHFDEPQRAVTPGQYVVFYQGDV----CLGGGPIEST 385


>gi|171913655|ref|ZP_02929125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 365

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 182/376 (48%), Gaps = 28/376 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++ A+SGGVDSSV AALL R+G+DV G  ++  N        G C   +D+ DAR V 
Sbjct: 1   MKILAALSGGVDSSVAAALLVREGHDVSGAYMK--NWINEENIIGHCPWQEDIEDARAVA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +   V +    +R  V+    + Y  G TP P V CNR +KF  L    +  G D 
Sbjct: 59  DQLGIEFRVVNLMREYREKVVKYLLAGYQEGITPNPDVMCNREMKFGVLWEWAKDHGYDA 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R  L    +     I+ R +D  +DQ+YFL     +Q+   RFP+G + K  V
Sbjct: 119 IATGHYARWELPA--EPGAHPIVRRGVDGNKDQTYFLAMMRPEQVEIARFPIGHLPKAEV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A  +GL  A+K DSQ ICF+ + K  D ++         G+IV+L G++LG H G+ 
Sbjct: 177 RVEASRLGLKTAEKKDSQGICFIGEVKMEDFLRTFVPDNP--GNIVNLEGKVLGEHRGLH 234

Query: 261 NYTIGQRRGLGVA--MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
            YT+GQR+GL V   + +  +VV   + ++  +V   E  +   ++ R+       +   
Sbjct: 235 LYTLGQRKGLRVPSNLYKQAYVVVAKRPAANELVVAIEQADTPLLWARK------AILTQ 288

Query: 319 AVVDGFKCFVKIRSSQDP---VPV-------FVQRNDDGVYVDFEKSEVGVASGQACVFY 368
               G    V  R +  P    P        F + +     + +++ +  +  GQ C  Y
Sbjct: 289 ISTTGPDLLVPRRLNAQPRYRCPAGMAMYTPFEREDGWAAELVYDEPQRALTPGQICALY 348

Query: 369 TSDSNEARVLGGGIIS 384
             D    ++LGG +  
Sbjct: 349 DGD----QLLGGAVFE 360


>gi|17538240|ref|NP_502120.1| hypothetical protein B0035.16 [Caenorhabditis elegans]
 gi|20141962|sp|Q17440|MTU1_CAEEL RecName: Full=Probable mitochondrial tRNA-specific 2-thiouridylase
           1
 gi|13548315|emb|CAA97418.2| C. elegans protein B0035.16, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 375

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 187/378 (49%), Gaps = 28/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDS+V A LLK+ G+DVIG  L + N     +    C   +D  DAR VCD
Sbjct: 3   RVVIGMSGGVDSAVSAFLLKKRGFDVIG--LHMINWDVQEEGTSHCPRSKDESDARNVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V + F  +Y  G T +P +DCN+++KF     + R+   AD 
Sbjct: 61  RLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADF 120

Query: 141 LATGHYIRSRLYVGD------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGHY  +    GD      D    R+     D  +DQ++FL    Q+QL    FPLG 
Sbjct: 121 IATGHYATTNF--GDFQQNAKDSDEIRLFSG-KDPLKDQTFFLCTVNQEQLKRAMFPLGS 177

Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI 252
           ++K  V+ +A E G  ++A K +S  ICF+ + K F     ++  I  + G I+  NG  
Sbjct: 178 LQKSEVKRIAEEQGFQEVAKKPESMGICFIGKKKRFSDF--LDEYIEPKPGRILLKNGSE 235

Query: 253 LGRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306
           +G H+GI  +TIG+R   + L        FV ++  ++  +I         L   R  + 
Sbjct: 236 IGNHHGIHQFTIGKRINGKYLEARSHLGFFVSHIHSDTGDIIACEGSHHPDLYASRFLIN 295

Query: 307 EINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
              W+     F     + F C  +I+ +  P+P   ++ +  + V    +    A GQ C
Sbjct: 296 HPKWIRTFDPFNRISSNNFLC--RIQRTHPPIPCVAEKQEQFLSVIPRLALRATAPGQMC 353

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY +  NE   LGGG I
Sbjct: 354 VFYNT-KNEC--LGGGEI 368


>gi|167837825|ref|ZP_02464708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis MSMB43]
          Length = 311

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 155/325 (47%), Gaps = 22/325 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR 343
              DG +C  K R  Q   P    R
Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGR 311


>gi|194246580|ref|YP_002004219.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma mali]
 gi|193806937|emb|CAP18369.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase
           [Candidatus Phytoplasma mali]
          Length = 385

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 180/382 (47%), Gaps = 31/382 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ +SGGVDSSV A LLK+ GY V  V ++ ++S      KG+       C   +D  
Sbjct: 4   KVIIGLSGGVDSSVAALLLKQKGYLVEAVFMKNWDSGLNFDIKGNPDIKELVCPQTKDYQ 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA ++   + +  +  D+ E + N V   F  S     TP P V CN  +KF+       
Sbjct: 64  DALKISQQLEIKLHKVDFVEEYWNKVFKYFLDSLKKNLTPNPDVLCNNEIKFNVFTKYVD 123

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
               D +ATGHY      +  D   + I+ +  D  +DQSYFL    Q QL  + FPLG+
Sbjct: 124 TFKPDFIATGHYAN----IDYDKNNKLILKKAFDTNKDQSYFLSQLKQHQLKKIIFPLGN 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR++A++ GL  A+K DS  ICF+ + ++FD +K  N      G +  L+G  L 
Sbjct: 180 LTKPEVREIAKKAGLINANKKDSTGICFIGERRFFDFLK--NYLPMKPGKMKKLDGTYLK 237

Query: 255 RHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIY-----L 305
            H G I YTIGQR+GLG+   +    P FVV   KN  + I+   +  E   +Y     +
Sbjct: 238 EHRGTIYYTIGQRKGLGLGGCQFNQSPWFVV--GKNLKKNILYVEQGSEHFYLYSDSALI 295

Query: 306 REINWLGD--GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASG 362
            ++ W G    + E   +       K R  Q D        N+  V V + +    V  G
Sbjct: 296 VDVVWRGTIYDIQEQIKISKKNLNAKFRYRQLDQKISITWLNNTTVKVYYPQKIKAVTPG 355

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q C FY  D      LG G+I 
Sbjct: 356 QICAFYLEDI----CLGSGMIK 373


>gi|238021297|ref|ZP_04601723.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147]
 gi|237868277|gb|EEP69283.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147]
          Length = 362

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 22/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   ++V +SGGVDSSV AALL + G++V G+ +Q +      +    C   +D  DA  
Sbjct: 2   QSQNIIVGLSGGVDSSVTAALLHQQGHNVRGIFMQNWEDDNNDQY---CSIKEDSLDAMA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L      GA
Sbjct: 59  VADIIGIDIDIVNFAAQYKDKVFAYFLQEYEAGRTPNPDVLCNAEIKFKCFLDHAIAQGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R  +  G        + +  D  +DQSYFL+     QL    FPLG M+K 
Sbjct: 119 EAIATGHYARKEVRNG-----VHYLLKGADGSKDQSYFLYRLQPFQLERALFPLGGMQKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA +  L  A K DS  ICF+ +  + + +++        G++V  +G+I+G H G
Sbjct: 174 EVRRLASDFRLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPDGKIVGEHIG 231

Query: 259 IINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRESLEVH-RIYLREINWLGDG 314
           +  YTIGQR+GLG+   GEP FV    L +N   V+ G  + L     + + +++W    
Sbjct: 232 LTFYTIGQRKGLGIGGAGEPWFVAGKNLARNELIVVQGHDDPLLYSGSLKMNQLSWT--- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           L E      + C  + R +  P  +    +D    + F+  +  V  GQ+ V Y  D   
Sbjct: 289 LPEKPAAGRYTCKTRYRMADAPCELRY-LDDHTAELVFDAPQWAVTPGQSAVLYDGDI-- 345

Query: 375 ARVLGGGIISGSKR 388
              LGGGII+ + +
Sbjct: 346 --CLGGGIITETDK 357


>gi|91215966|ref|ZP_01252935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychroflexus torquis ATCC 700755]
 gi|91185943|gb|EAS72317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychroflexus torquis ATCC 700755]
          Length = 397

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 46/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A L K  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLCKEKGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  ++++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDLSKQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIATSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      +     R++    D  +DQSYFL   +Q+QL    FP+G+++K  VR
Sbjct: 122 ATGHYCRKDSIEKNSETIYRLLAGKDD-NKDQSYFLCQVSQKQLAKTLFPVGELQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGDIVH----------- 247
            +A+   L  ADK DSQ +CF+ + K  D ++   +   G  +E D  H           
Sbjct: 181 QIAKSQNLITADKKDSQGLCFIGKVKLPDFLQQKLKSKEGQVIEIDSSHDIFKAEKSAKT 240

Query: 248 -------------------LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
                                G++LG H G   +T GQR+GL +    EPLFV+  D  +
Sbjct: 241 DSELITQLKKDSKKLSLKPEFGKVLGTHVGAHFFTKGQRKGLAIGGTKEPLFVIDTDVEN 300

Query: 288 SRVIVGPRESLE-VHRIYLR----EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + +  G  ++   +H+  L     E++W+   L E    D  +   +IR  Q      + 
Sbjct: 301 NILYTGQGKTHPGLHKKGLWVTNDEVHWIRQDL-ELKEGDTMEVMARIRYRQPLEKAKLY 359

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  D +YV FE  +  ++ GQ   +Y  D     +LG G+I+
Sbjct: 360 KMKDELYVIFEDEQTAISEGQFVAWYHED----ELLGSGVIA 397


>gi|254468139|ref|ZP_05081545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
           proteobacterium KB13]
 gi|207086949|gb|EDZ64232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
           proteobacterium KB13]
          Length = 364

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   ++V +SGGVDS+V A +LK+ G++V G+ ++ +   +A      C + QD+ DA  
Sbjct: 2   KKKNIIVGLSGGVDSAVTAHILKQQGHNVRGLFMKNW---EADDDDEYCSSKQDLIDAIS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +   V ++ + ++  V   F      G TP P + CN  +KF   L+   QLGA
Sbjct: 59  VAEKIGIDIEVVNFAKEYKEKVFNLFIDGLKKGFTPNPDILCNSEIKFEAFLNHAMQLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      V  DG     + + MD  +DQSYFL    QQQL    FPLG + K 
Sbjct: 119 DHIATGHYAD---VVEKDG--LFYLLKGMDSTKDQSYFLHKLNQQQLSKSIFPLGKILKS 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E  L   D+ DS  ICF+ +  + + + +        GDIV ++G+ +G+HNG
Sbjct: 174 DVRKIAKENNLHNHDRKDSTGICFIGERPFAEFLNQFIP--KNPGDIVTVDGKNIGKHNG 231

Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+     G     GEP FV   D   +++IV       +L    I   EI+ 
Sbjct: 232 LTFYTVGQRQGLGIGGTSSGSGEPWFVAKKDMKENQLIVAQGKNHPALYHDSIEAEEIHA 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           + +     +V+       KIR  Q D      + N DG+   F + +  V  GQ  VFY 
Sbjct: 292 ISNSFPIQSVIGA-----KIRYRQPDAACQINEINSDGLVSFFGQKQWAVTPGQYIVFY- 345

Query: 370 SDSNEARVLGGGII 383
            DSN    LGG +I
Sbjct: 346 -DSN--ICLGGAVI 356


>gi|260799001|ref|XP_002594488.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
 gi|229279722|gb|EEN50499.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
          Length = 383

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 181/369 (49%), Gaps = 24/369 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VVVA+SGGVDSSV A LLKR GY V GV ++ +++       G C A +D  DA  VC 
Sbjct: 5   HVVVALSGGVDSSVAALLLKRKGYQVTGVFMRNWDT---VNELGVCQADRDCEDAEYVCR 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +  +  + + N V       Y  G TP P + CN+ +KF    + V  +  AD 
Sbjct: 62  RLDIPFHQVNLVKDYWNDVFSEMLKEYQHGWTPNPDILCNKRIKFRTFFNYVMDKFEADA 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R+ ++   D K    + + +D  +DQ++FL    QQ L    FPLG++ K  V
Sbjct: 122 LATGHYARTSIH---DVK----LLQALDSWKDQTFFLSQIPQQALRRALFPLGELTKPVV 174

Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           + +A++ G   IA K +S  ICF+    +   ++         G  V  ++G++LG H G
Sbjct: 175 KQMAQDAGFTHIAKKKESMGICFIGTRNFPTFLQEYLE--TEPGQFVSVVDGKVLGEHKG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
              YTIGQR GLG  M EP FVV  D +++ + V P     +L    I    ++W+ D  
Sbjct: 233 ACMYTIGQRAGLG-GMKEPWFVVDRDTSTNSIFVCPTTDHPALYRQLIMTESVHWIADPP 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +  V   + C  + +     V        ++ V+V   +    +  GQ  VFY  D   
Sbjct: 292 RDLYVDQMYDCHFRFQHRMPLVKCTLTLSGNNQVWVSLAEPIRALTPGQYAVFYKGDE-- 349

Query: 375 ARVLGGGII 383
              LGGG I
Sbjct: 350 --CLGGGKI 356


>gi|195996679|ref|XP_002108208.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens]
 gi|190588984|gb|EDV29006.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens]
          Length = 369

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 194/371 (52%), Gaps = 23/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDS++ A LL++ G++V+G+ ++ ++    ++  G C   +D+ D  + C+ 
Sbjct: 8   IAVAMSGGVDSTIAAYLLRKQGHEVVGIFMKNWD---ITEETGICKTDEDMQDFIKSCNH 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + + H   ++ + + + V  PF + Y  G TP P + CNR +KF+ L    +  LG D L
Sbjct: 65  LGIPHKEVNFVQDYWHHVFSPFVNGYKQGITPNPDITCNRMIKFNKLRQYCSENLGVDNL 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    +  D K + I  + +D  +DQ+YFL    +  L ++ FP+G++ K  V+
Sbjct: 125 ATGHYAQ----LVTDSKPKLI--QAVDEAKDQTYFLANVKKISLKNIMFPIGNLLKSEVK 178

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           +LA ++GL  IA K +S  +CF+ +  +   +         E D+  ++GQ  G+H+ + 
Sbjct: 179 NLALKIGLRKIATKKESMGVCFIGKRNFKTFISEYIEN--QEYDVNTIDGQNFGKHSNLS 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD-GLF 316
             TIG+R  +G  M E  +VV  D N   + + P     +L     Y+ + NW+      
Sbjct: 237 LSTIGERARIG-GMSERWYVVSKDSNRKVITLAPGINHPALYCRIFYVADANWISYCAEM 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           + ++    +C ++IR     VP  ++   +G + V+ ++S   V  GQ   FY+ +    
Sbjct: 296 QLSLRKELECHIRIRHLAPLVPCLIKLQYNGFLEVNSQQSLFAVTPGQFAAFYSRN---- 351

Query: 376 RVLGGGIISGS 386
             LGGG I  S
Sbjct: 352 ECLGGGQIVSS 362


>gi|167740138|ref|ZP_02412912.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 14]
          Length = 311

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 155/325 (47%), Gaps = 22/325 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D   N+  V+ G     L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR 343
              DG +C  K R  Q   P    R
Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGR 311


>gi|240047229|ref|YP_002960617.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma conjunctivae
           HRC/581]
 gi|239984801|emb|CAT04780.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma conjunctivae]
          Length = 370

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 183/362 (50%), Gaps = 34/362 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           R+VV +SGGVDSSV A LLK+ G++VI V ++ ++S   +  KG+       C   +D  
Sbjct: 3   RIVVGLSGGVDSSVTAYLLKQQGHEVIAVFMRNWDSTINNDIKGNDSYQDHICPQEKDWL 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+++   +++  +  D+ + + N V       Y  G+TP P + CN+ +KF   L+ + 
Sbjct: 63  DAQKIAKQLDIPIHRVDFIDEYWNEVFEDLIEKYKNGKTPNPDILCNKNIKFKHFLNYSI 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +  AD +A GHY ++             +    D  +DQSYFL   + +QL  + FPLG
Sbjct: 123 EKFKADFIAMGHYAKTE---------NSFLFEAKDENKDQSYFLSQLSNEQLKKVLFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-I 252
           D  K+ VR +A E  L   DK DS  ICF+ + ++ D ++  N   +  G+IV +  Q I
Sbjct: 174 DYTKDQVRKIAFEQNLITHDKKDSTGICFIGERRFSDFLQ--NYIPSQPGNIVDITTQKI 231

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +GRH G + +TIGQR+G G++ M +P FVV  +     + V P++     R +L   N L
Sbjct: 232 VGRHVGAMYFTIGQRKGFGLSGMSQPYFVVGHNLAQKILYVAPQDQ----RHWLVSNNLL 287

Query: 312 GDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACV 366
              L   +A  +      K R  Q  V V ++  D+      Y DFE     V  GQ  V
Sbjct: 288 ASHLNILNANFNPNNLKAKFRYHQKAVAVQIKIIDNDQFQVYYDDFE----AVTPGQEVV 343

Query: 367 FY 368
            Y
Sbjct: 344 IY 345


>gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
 gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
          Length = 375

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 177/382 (46%), Gaps = 38/382 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      ++++          SC   +D+  A+ VC
Sbjct: 1   LRVAVLVSGGVDSSVALRLLCAAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVC 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   +    + + N V+    +   AG TP P + CN  VKF   L    +   D 
Sbjct: 61  DEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDR 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY R   YV + G  R  +    D  +DQ+YFL   +Q+QL  L FPLG + K  V
Sbjct: 121 VASGHYARVERYVDEQGTIRARLKLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA  + L   D+ DSQ ICF+ + K+ D + R      G+ +E +     G+ +G+H 
Sbjct: 181 RQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAE----TGKTMGKHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQRRG+ ++ G P +VV  D              E + +Y+    + GD    
Sbjct: 237 GFWFYTIGQRRGISLSHG-PWYVVAKDS-------------EKNLVYISRHYFSGDKKRR 282

Query: 318 DAVVDGFKCFVKIRSSQDPV-------PVF------VQRNDDGVYVDFEKSEVGVASGQA 364
           +  VD    F  I     P+       P F      V+R   G  V    ++  +A+GQ 
Sbjct: 283 NFYVDNLSWFSTIPDPSCPIKCKVRHGPSFHDCELEVEREKQGARVKLLHNDQALAAGQY 342

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
             FY  ++     LG G+I+ S
Sbjct: 343 AAFYAGET----CLGSGMITES 360


>gi|239813406|ref|YP_002942316.1| tRNA-specific 2-thiouridylase MnmA [Variovorax paradoxus S110]
 gi|239799983|gb|ACS17050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus S110]
          Length = 369

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 182/391 (46%), Gaps = 54/391 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V 
Sbjct: 4   QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAASVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ 
Sbjct: 61  DVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R RL   ++   R  + + +D  +DQSYFL    Q QL    FP+G++ K  V
Sbjct: 121 IATGHYARVRL---NETTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEV 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E+GL  A K DS  ICF+ +  + + + R    I+ E G I    G+ LG H G+
Sbjct: 178 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRY---ISKEPGPIKDDRGRKLGEHQGL 234

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLD--KNSSRVIVGPRESLEVHRIYL 305
             YT+GQR+GLG+                P FV   D  KN+  V+ G       H   L
Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQG-----HDHPWLL 289

Query: 306 REINWLGDGLF---EDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDF 352
                 GD  +   E      +    + R +           DP   F  R        F
Sbjct: 290 SSALAAGDASWVSGEAPAPGRYGSKARYRQADAACELEEGGGDPAASFSLR--------F 341

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  V  GQ+ V Y  +    R LGGG+I
Sbjct: 342 GEPQWAVTPGQSAVLYDGE----RCLGGGVI 368


>gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
 gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
          Length = 375

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 176/382 (46%), Gaps = 38/382 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      ++++          SC   +D+  A+ VC
Sbjct: 1   LRVAVLVSGGVDSSVALRLLCGAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVC 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   +    + + N V+    +   AG TP P + CN  VKF   L    +   D 
Sbjct: 61  DEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDR 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY R   YV + G  R  +    D  +DQ+YFL   +Q+QL  L FPLG + K  V
Sbjct: 121 VASGHYARVERYVDEQGTIRARLMLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA  + L   D+ DSQ ICF+ + K+ D + R      G+ +E +     G+ +G+H 
Sbjct: 181 RQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAE----TGKTMGKHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQRRG+ ++ G P +VV  D              E + +Y+    + GD    
Sbjct: 237 GFWFYTIGQRRGISLSHG-PWYVVAKDS-------------EKNLVYISRHYFSGDKKRR 282

Query: 318 DAVVDGFKCFVKIRSSQDPV-------PVF------VQRNDDGVYVDFEKSEVGVASGQA 364
           +  VD    F  I     P+       P F       +R   G  V    S+  +A+GQ 
Sbjct: 283 NFYVDNLSWFSTIPDPSCPIKCKVRHGPSFHDCELEFEREKQGARVKLLHSDQALAAGQY 342

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
             FY  ++     LG G+I+ S
Sbjct: 343 AAFYAGET----CLGSGMITES 360


>gi|256820771|ref|YP_003142050.1| tRNA-specific 2-thiouridylase MnmA [Capnocytophaga ochracea DSM
           7271]
 gi|256582354|gb|ACU93489.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Capnocytophaga ochracea DSM 7271]
          Length = 397

 Score =  169 bits (427), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 191/405 (47%), Gaps = 52/405 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD +
Sbjct: 62  KLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R        GK  R++    D  +DQSYFL   +Q QL    FP+G+++K  VR
Sbjct: 122 ATGHYCRKEEIEIKGGKIYRLLSG-KDENKDQSYFLCQLSQDQLSKALFPVGELQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQ------------QGKYFDVVKRINAGI---------- 239
            +A+   L  ADK DSQ +CFV             Q K  D+++  N             
Sbjct: 181 AIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQPKQGDIIEIPNDWKGYTDFDMPRT 240

Query: 240 --ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287
               E ++ +L         NG+ +G H G   +T GQR+GL V    EPLF++  D   
Sbjct: 241 FETYEDELEYLSQRFVYQPENGKKVGIHQGAHYFTKGQRKGLNVGGTKEPLFIIETDIEK 300

Query: 288 SRVIVGPRESLEVHRIYLREI--------NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
           + +  G   +   HR   R          +W+ + L    + +  +  V+IR  Q     
Sbjct: 301 NIIYTGQGHT---HRGLFRSALFIATPDEHWIREDL-ALKIYESKEFMVRIRYRQPLQKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + ++G+Y+ F + +  +  GQ   +Y+ D     ++G G+IS
Sbjct: 357 VLYKVENGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397


>gi|88812884|ref|ZP_01128128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrococcus mobilis Nb-231]
 gi|88789806|gb|EAR20929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrococcus mobilis Nb-231]
          Length = 374

 Score =  169 bits (427), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 181/371 (48%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +V +SGGVDS+V A LL   G+ + G+ ++ +     +     C A QD+  A++VC 
Sbjct: 6   RYIVGLSGGVDSAVAALLLLEQGHAIQGLFMRNWEDDDTAT---YCSAEQDLAYAKQVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +V ++   +R  V       Y  G TP P + CN+ +KF   ++  ++LG D +
Sbjct: 63  QLDIPLHVANFAHEYRAEVFDHCLREYRRGHTPNPDILCNQRIKFHAFINYAQRLGTDHI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+   +   G     + +  D ++DQSYFL+   Q+QL    FPLG+  K +VR
Sbjct: 123 ATGHYARN---IERHGTYH--LFKAKDADKDQSYFLYTLGQRQLARATFPLGEHAKSTVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + G D  D+ DS  ICF+ +  +   + R        G I    G ++GRH G+  
Sbjct: 178 ALAEQAGFDNFDRKDSTGICFIGERAFRPFLSRYIQ--PTPGPIETPEGVVVGRHQGVSF 235

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT+GQR+GL +       G+P +VV  D  ++R+IV        L    +   E+ W+  
Sbjct: 236 YTLGQRQGLEIGGRAGRSGKPWYVVGKDTPANRLIVAQGHDHPLLMSVGLEATELCWVAG 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                      +CF K R  Q      V+    D     F++ +  V  GQ+ VFY  + 
Sbjct: 296 ----RPPSTPLRCFAKTRYRQPSQSCVVEAITADCARTVFDQPQRAVVPGQSVVFYCDEE 351

Query: 373 NEARVLGGGII 383
                +GGG+I
Sbjct: 352 ----CIGGGVI 358


>gi|149372147|ref|ZP_01891417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [unidentified eubacterium SCB49]
 gi|149354914|gb|EDM43476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [unidentified eubacterium SCB49]
          Length = 418

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/409 (31%), Positives = 194/409 (47%), Gaps = 53/409 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  
Sbjct: 20  KKKRVVVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAML 78

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++     D    ++  ++      Y  G TP P V CNR +KF   L +  +LGA
Sbjct: 79  VAQALDIPFQTVDLSAEYKERIVDYMFREYKMGRTPNPDVLCNREIKFDVFLKIALELGA 138

Query: 139 DVLATGHYIRSRLY--VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D +ATGHY R  +      DGK    +    D  +DQSYFL   +Q+QL    FP+G++ 
Sbjct: 139 DFVATGHYCRKGISQETTADGKPIYQLLSGKDSNKDQSYFLCQLSQEQLSKTLFPIGELL 198

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------- 248
           K  VR +A    L  A+K DSQ +CF+ + +  + +++  A    EG IV +        
Sbjct: 199 KPEVRKIAAAQNLITAEKRDSQGLCFIGKVRLPEFLQQQLA--PKEGVIVEIPADSEVYQ 256

Query: 249 -------------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY 282
                                    +G+ +G H G   +T GQR+GL V    E LFV+ 
Sbjct: 257 KKDVSFSSETEALKSLSSKQTYSVSDGKKVGTHQGAHYFTKGQRKGLAVGGTKEALFVID 316

Query: 283 LDKNSSRVIVGPRESLE-VHR----IYLREINWLGDGLFEDAVVDGFKCFV--KIRSSQD 335
            D   + V  G  ++   ++R    I   EI+W+   L   A+  G K  V  +IR  Q 
Sbjct: 317 TDVKENVVYTGQGKTHPGLYRRGLFIQADEIHWVRQDL---AIEIGEKMEVEARIRYRQP 373

Query: 336 PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
                + R +DG+YV FE ++  +A GQ   +Y ++     ++G G+IS
Sbjct: 374 LEKATLHRVEDGLYVIFENAQSAIAEGQFAAWYKNE----ELIGSGVIS 418


>gi|203284580|ref|YP_002222320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia duttonii Ly]
 gi|229486337|sp|B5RMM8|MNMA_BORDL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|201084023|gb|ACH93614.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia duttonii Ly]
          Length = 354

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 185/374 (49%), Gaps = 36/374 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ + +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + + +E + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++      + +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +R +A E+ L   ++ DSQ ICF+ + KY + +K  + G  L+G+I+    G+ILG HNG
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKY-HLG-ELKGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--------KNSSRVIVGPRESLEVHRIYLREINW 310
              +TIGQR+G+ ++ G P FV   D         NS+  +   +E   VH+      NW
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHK-----TNW 285

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +   L  D +        KIR  +  +   ++   D+ + V+ E+ + G++ GQ C+FY 
Sbjct: 286 INKPLKNDNLS------AKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYK 339

Query: 370 SDSNEARVLGGGII 383
            D      LGG  I
Sbjct: 340 ED----ECLGGAKI 349


>gi|261749175|ref|YP_003256860.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497267|gb|ACX83717.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 394

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 201/402 (50%), Gaps = 51/402 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV A LLK+ GY+VIG+ +  ++    ++    C   +D  DA  V  
Sbjct: 5   RVVVGLSGGVDSSVAALLLKKQGYEVIGLFMHNWDDSVFNQ----CTWKEDSIDALLVAK 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+   V + ++ +  ++I      Y +G+TP P + CNR +KF+  L  +  LGAD +
Sbjct: 61  DLNIPFQVVEMKKEYEESIINYMFDGYRSGKTPNPDILCNREIKFNVFLKKSIDLGADFI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+  +  + ++    R++    D  +DQSYFL   TQ QL    FPLG + K  VR
Sbjct: 121 ATGHYVNKKKIIKNNKIIYRLLVGK-DSNKDQSYFLCQLTQYQLKKSLFPLGSLTKNQVR 179

Query: 202 DLAREMGLDIADKSDSQDICFV--------QQGKYFDVVKRI--------------NAGI 239
            +A + GL  A K DSQ +CFV         Q K F     I               + +
Sbjct: 180 KIAEKNGLCNAYKKDSQGLCFVGKIQLSRFLQKKIFPKKGEIVMIDSNALMYHPKKKSFL 239

Query: 240 ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289
           + E ++  L         +G+++G H G   +T GQR+G+ +    + LFV+  D   + 
Sbjct: 240 SKEEELFFLSKRKKYQKSDGKVIGYHQGAQFFTKGQRKGISIGGYKKALFVIETDIKENI 299

Query: 290 VIVG---PRESLEVHRIYLRE--INWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQ 342
           V  G       L    ++++E  I+W+ + +   A+++G K   F +IR  Q      + 
Sbjct: 300 VYTGMGKNHPGLYKKSLFIQEKDIHWIREDI---ALLNGEKMEVFCRIRYRQPLQKALLY 356

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  +G++++FE  +  +  GQ  V+Y     +  ++G GIIS
Sbjct: 357 KIKNGMFIEFEILQCAITEGQFAVWYL----DKELIGSGIIS 394


>gi|86140336|ref|ZP_01058895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832278|gb|EAQ50727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leeuwenhoekiella blandensis MED217]
          Length = 399

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 192/411 (46%), Gaps = 64/411 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V + 
Sbjct: 4   VVVGLSGGVDSSVSAYLLKEAGYNVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMLVAEK 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D  E+++  ++      Y  G TP P V CNR +KF   + +   LGAD +A
Sbjct: 63  LGIPFQTVDLSEQYKERIVDYMFWEYEMGRTPNPDVLCNREIKFDVFMKIALDLGADYVA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY + R     DGK    +    D  +DQSYFL   +Q+QL    FP+G ++K  VR 
Sbjct: 123 TGHYCQ-RGETEIDGKPVYQLLAGADANKDQSYFLCQLSQEQLAKTLFPIGHLQKSEVRK 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE----------GDIVHLN 249
           +A+   L  A+K DSQ +CF+ + +  D ++   +   G+ +E           D    N
Sbjct: 182 IAKAQDLVTAEKKDSQGLCFIGKVRLPDFLQQKLKPKEGVIVEIPAERAQEKINDFQEAN 241

Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286
                                 G+++G+H G   +T GQR+GL V    EPLFV+  D  
Sbjct: 242 DSDVAVTDVAVLAKKPKYSIAEGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVE 301

Query: 287 SSRVIVGP--------RESL-----EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSS 333
            + +  G         R +L     EVH  Y+RE   L +G       +  +   +IR  
Sbjct: 302 ENVIYTGQGKNHPGLLRSALFVQEDEVH--YIREDLKLQEG-------EVVETKARIRYR 352

Query: 334 QDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           Q     ++ + +DG++V FE  +  ++ GQ   +Y  D      LG G+IS
Sbjct: 353 QPLEKAWLHKVEDGLFVSFENPQSAISEGQFVAWYDGD----ECLGSGVIS 399


>gi|303247462|ref|ZP_07333734.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans
           JJ]
 gi|302491158|gb|EFL51050.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans
           JJ]
          Length = 346

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 157/361 (43%), Gaps = 20/361 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VA SGG DS +   LL+++G+ V  +           ++     A Q        C+ 
Sbjct: 4   LAVAASGGADSLLALGLLQKEGHGVFAIHAHFLPPDDKQQQLADAIAAQ--------CEA 55

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V     D  + FR  VI PF ++Y AGETP PC  CNR +KF  L      LGAD +A
Sbjct: 56  IGVPFQAIDLSDAFRARVIAPFIAAYVAGETPNPCAACNRDLKFGLLAEAAISLGADKIA 115

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY         D      + R  D  RDQSYFL    Q  L    FPL   KK    +
Sbjct: 116 TGHYAGLA-----DTPEGAALFRGADATRDQSYFLSLVPQSALARALFPLARRKKADNPE 170

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
               + L      +S+++CFV    Y   ++     ++  G I   +G ILG H G+  +
Sbjct: 171 ALAALDLAPPLPRESREVCFVPGDDYRAFLEASGVPLSGPGPIALPDGTILGAHQGLWRH 230

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLGV   EPL+V+  D  ++ + VGP++ L       RE+N L         V 
Sbjct: 231 TIGQRKGLGVGWREPLYVLAKDAAANTLRVGPKQDLLAASCRAREVNVLVPPRDWPETVL 290

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
           G  C+                 D  + + FE        GQ    Y +     RVL GG+
Sbjct: 291 GQTCYRMAPRPA----RAAIAADGSLDIVFEAPLPRPTPGQVATLYDA---AGRVLAGGV 343

Query: 383 I 383
           I
Sbjct: 344 I 344


>gi|189465036|ref|ZP_03013821.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM
           17393]
 gi|189437310|gb|EDV06295.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM
           17393]
          Length = 350

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 174/356 (48%), Gaps = 27/356 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++ MSGG DSSV A LL+  GY+V GVT + Y+S             + + DAR +  
Sbjct: 6   RVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSEGFE---------ESLDDARTLAS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ H ++D  E FR  +I  F   Y +  TP+PC  CN  +K+  L  +  ++G   +
Sbjct: 57  RLNIPHIIYDARELFRERIIRYFIGEYLSARTPVPCTLCNNELKWPLLAKIADEMGIYWI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY+R    V  D      +    D ++DQ++FL+   Q  L  +  P+GD  K+ VR
Sbjct: 117 STGHYVRK---VFQDN--HYFIAPAADRDKDQTFFLWGLKQDILERMILPMGDWTKDEVR 171

Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258
             A   G +  A K DS  +CF     Y   ++R      L  +G  +  +G  LG H G
Sbjct: 172 TYAAGRGFERAATKKDSLGVCFCPM-DYRSFLQREVPQELLPGKGRFIDESGTFLGWHKG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ M    FV  + K S+ VI+ P  SL    + L++ N        D
Sbjct: 231 YPFYTIGQRRGLGIHMNRAAFVKEICKASNEVILAPLASLYKTEMLLKDWN------IVD 284

Query: 319 A--VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           A  +++     VKIR  +      V    ++ ++V   +    +ASGQA  FY  D
Sbjct: 285 ASRLLNSPNVIVKIRYRKQANYCTVGITAENLLHVQLHELLESIASGQAAAFYDED 340


>gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptobacterium curtum DSM 15641]
 gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptobacterium curtum DSM 15641]
          Length = 394

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 172/367 (46%), Gaps = 28/367 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV AALL   G+DV G  ++ +       R   C    D+ DA+RV  
Sbjct: 50  RVLVGLSGGVDSSVCAALLVETGWDVCGAYMKNWTMDVPGMR---CPWADDLADAKRVAV 106

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V+D++E ++  V+      Y AG TP P V CN+ VKF       +  G D +
Sbjct: 107 RLGIDFRVYDFQEAYKREVVDYLVDEYRAGRTPNPDVMCNQQVKFGLFFDAAQDDGFDYI 166

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+      D  R   + R  D  +DQ+YFL+  +   +    FPLG + K  VR
Sbjct: 167 ATGHYARA----SHDPVR---LLRAADTHKDQTYFLYRMSSDAVAHTIFPLGGLLKTQVR 219

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGDIVHLNGQILGRHNG 258
             A +  L  A K+DSQ ICFV +    D +        G  ++ D     G+ +G H+G
Sbjct: 220 AAAEQRNLSTAHKADSQGICFVGEAGICDFLSLYVHPQPGPIIDDD----TGETVGYHDG 275

Query: 259 IINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            I +TIGQR GLG+  G    VV   +D N   V  GP   ++   + L  + W+ D   
Sbjct: 276 AIFFTIGQRHGLGIGGGRRYRVVRKDMDHNILYVHDGPLAPVQDSLLELDRVRWIADVPP 335

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++       C V+    +  +   +        V  E     VASGQ+ V Y        
Sbjct: 336 QEGA-----CEVRTHHGEKLLAATLLATATTATVQLEADHDAVASGQSVVIYRGQE---- 386

Query: 377 VLGGGII 383
            LGGGI+
Sbjct: 387 CLGGGIV 393


>gi|255010205|ref|ZP_05282331.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacteroides fragilis 3_1_12]
          Length = 353

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 181/372 (48%), Gaps = 38/372 (10%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR +   + + 
Sbjct: 1   MSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARALATRLGIE 51

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H  +D  E FR  ++  F   Y AG TP+PC  CN  +K+  L  +  ++G   LATGHY
Sbjct: 52  HITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGIFYLATGHY 111

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R +   G        +    D ++DQS+FL+   Q  L  +  P+G+M K   R  A  
Sbjct: 112 VRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKPEARAYAAG 166

Query: 207 MGLD-IADKSDSQDICFVQQGKYFDVVKR--INAG------IALE---GDIVHLNGQILG 254
            G + ++ K DS  +CF     Y   +K+   +AG      I  E   G  +  +G  + 
Sbjct: 167 RGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFLDESGNFIA 225

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ +   +FV  +   ++ VI+ P +SLE   ++L++ N     
Sbjct: 226 WHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLKDWN----- 280

Query: 315 LFEDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
           +  ++ + G+    V+IR  +      V    +G +++   +    +A GQA  FY    
Sbjct: 281 IINESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQAAAFY---- 336

Query: 373 NEARVLGGGIIS 384
            +  +LGGGII+
Sbjct: 337 KDGLLLGGGIIT 348


>gi|15829029|ref|NP_326389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pulmonis UAB CTIP]
 gi|24638329|sp|Q98Q11|MNMA_MYCPU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14089973|emb|CAC13731.1| TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           [Mycoplasma pulmonis]
          Length = 371

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 188/376 (50%), Gaps = 35/376 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------KASKRKGSCCAGQDVY 74
           ++V+ +SGGVDSSV A LLK+ G++VIG+ ++ ++S         +S  +  C   QD  
Sbjct: 3   KIVIGLSGGVDSSVAAYLLKQQGHEVIGLFMRNWDSLVNSDILGNSSLNQSLCPQEQDFQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA RV   I +  Y  D+ + + ++V       Y  G TP P + CN+ +KF    +   
Sbjct: 63  DASRVAKQIGIPIYRVDFIKEYWDSVFENLIEQYQNGFTPNPDILCNKYIKFDKFFNYAI 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +A GHY      +  +G     + R +D  +DQSYFL     Q L  + FPLG
Sbjct: 123 EKFGADYVAMGHYA-----IAKEGN----LYRGIDQSKDQSYFLTQVRSQVLEKVIFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252
           +M+K  VR +A+E  L  A+K DS  ICF+ + K+ D ++  N      G IV +   +I
Sbjct: 174 NMEKSEVRRIAQEANLYTANKKDSTGICFIGERKFTDFLQ--NYIPTQPGTIVDITTKKI 231

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G H G + YT+GQR+GL +  M EP FVV  D    +V V P   ++ L  + ++ + +
Sbjct: 232 VGNHIGAMYYTLGQRKGLNLGGMKEPYFVVGHDLEKKQVFVAPASEKKWLTSNWLFAQNL 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
           N L +  F    +       K R  Q  V V V+   +D + V + +    V  GQ    
Sbjct: 292 N-LNNHDFNPENLSA-----KFRYRQKDVRVKVEFLENDQIKVYYPEGFEAVTPGQQIAL 345

Query: 368 YTSDSNEARVLGGGII 383
           Y       + LGG +I
Sbjct: 346 YDGQ----KCLGGAVI 357


>gi|31544324|ref|NP_852902.1| multifunctional FAD synthetase/riboflavin kinase/tRNA-specific
           2-thiouridylase [Mycoplasma gallisepticum str. R(low)]
 gi|81572856|sp|Q7NBZ0|MNMA_MYCGA RecName: Full=Trifunctional protein ribF/mnmA; Includes: RecName:
           Full=FMN adenylyltransferase; AltName: Full=FAD
           pyrophosphorylase; AltName: Full=FAD synthase; Includes:
           RecName: Full=Riboflavin kinase; AltName:
           Full=Flavokinase; Includes: RecName: Full=tRNA-specific
           2-thiouridylase mnmA
 gi|31541168|gb|AAP56470.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930363|gb|ADC30302.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. R(high)]
          Length = 657

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 199/380 (52%), Gaps = 31/380 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASKRKGSCCAGQDV 73
           +VVVA+SGGVDS+V A LL++ GYDV+   +Q ++        S  A  +   C A QD 
Sbjct: 288 KVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHADDQIQGCDAKQDY 347

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D +++C+ + +  Y F++ E++ N V +     Y  G TP P V CN+  KF   ++  
Sbjct: 348 EDTQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLCNQFGKFGWFINAL 407

Query: 134 R-QLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           R Q G D+ +A GHY  ++L   DD      +    D  +DQ+YFL    ++QL ++ FP
Sbjct: 408 RKQFGDDIKIAFGHY--AKLITKDD---EVFLVHTKDHNKDQTYFLTMLKKEQLKNIIFP 462

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250
           L ++ K +VR++A++  L +A+K DS  ICF+ +  +   +   N     +G I+ ++  
Sbjct: 463 LSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFLS--NYLAIKKGPIILIDEN 520

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYL 305
           + +G H+G+  YTIGQ R L V    E +FV   D N++ + V    S    L      L
Sbjct: 521 KKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCDKDYNNNTLYVCYESSKDQYLSSVSCEL 580

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQA 364
            + NWL D   +D + +  K +++ R  Q       V  +DD V V + K ++GV  GQ 
Sbjct: 581 EKFNWLIDT--KDQLFNK-KLWIRFRHRQKLQECEIVSYHDDKVIVKYTK-QIGVTPGQY 636

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D N   V+GGG I+
Sbjct: 637 GVIY--DQN-LWVVGGGKIT 653


>gi|212704994|ref|ZP_03313122.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098]
 gi|212671546|gb|EEB32029.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098]
          Length = 387

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 180/397 (45%), Gaps = 51/397 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG----------- 70
           ++ VA+SGGVDS      L+  G+DV+ +   L+    AS   G C A            
Sbjct: 3   QLAVAVSGGVDSLCALLRLREQGHDVLALH-GLFLPDAASS--GPCPAPEGPRLLTAAEA 59

Query: 71  ----------QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                     Q V   +  C  + +  +V D    F   V+ PF  +YA G TP PC  C
Sbjct: 60  LAAPLPPASRQAVEGLQTACGQLGIPLHVADMRAVFDREVVTPFVRAYARGRTPNPCALC 119

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           NR +KF  LL     LGAD +ATGHY  +RL  G  G    ++    DL +DQSYFL   
Sbjct: 120 NRAIKFGALLDTALSLGADRIATGHY--ARLLDGPSGP---MLAAADDLAKDQSYFLSLV 174

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK--YFDVVKR--IN 236
             ++L    FPL    K +     +E GL +    +SQ+ICF+  G+  Y   ++R    
Sbjct: 175 PLERLRRAIFPLARQDKATSIAQVKEAGLAVPVPQESQEICFIPAGEDAYRAFLERRWQA 234

Query: 237 AGIALEGD---IVHLNG-------QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286
            G++L G    ++   G       + L RH G+  YT GQRRGLG+A  EPL+V+     
Sbjct: 235 EGLSLPGSGPVLLEEAGSDGRPVLRPLARHEGLWRYTEGQRRGLGIAHSEPLYVLRKQGE 294

Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD 346
            + ++VG R  L +H      +N L        ++       ++R  Q P P  V+  DD
Sbjct: 295 DNTLVVGGRARLGMHGCLTGPVNLLCPPEQWPDIL-----LARLRHRQRPTPAQVELTDD 349

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           G+ V   + +   A GQ    Y     + RVL G ++
Sbjct: 350 GLRVTLAEPQFPSAPGQVAAIY---DEQGRVLAGALV 383


>gi|73969262|ref|XP_538325.2| PREDICTED: similar to tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 isoform a [Canis familiaris]
          Length = 425

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 190/395 (48%), Gaps = 50/395 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADRDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F S Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG + K+ V+ +A E  L  +  K +S  ICFV +  + + +      R  
Sbjct: 183 DALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFILQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR 
Sbjct: 243 KFISIE------DNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDGTKGDVFVAPRT 295

Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V
Sbjct: 296 DHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +V   K+   +A GQ  VFY  D      LG G I
Sbjct: 353 WVTAVKAVRALALGQFAVFYKGDE----CLGSGKI 383


>gi|300113744|ref|YP_003760319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus watsonii C-113]
 gi|299539681|gb|ADJ27998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus watsonii C-113]
          Length = 391

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 187/373 (50%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A  L++ GY + G+ ++ +        +  C   QD  DA+ V  
Sbjct: 29  KVVVGLSGGVDSSVAALRLQQQGYPISGLFMKNWVD---FADESECTVAQDKKDAQAVTS 85

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L     LG  ++
Sbjct: 86  LLGISFHEANFAIEYWDRVFRYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 145

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D  + R  + +  D  +DQSYFL+   Q+QL    FPLG+++K  VR
Sbjct: 146 ATGHYARI-----DQQEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 200

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +  L    K DS  ICF+ + ++ + + R     A  G++   N + +G+H+G++ 
Sbjct: 201 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMCTPNKERIGQHDGLMY 258

Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR--EINWLG 312
           YT+GQRRGLG+     + G P FVV   L +N   V  G R+   +  + L   +++W+ 
Sbjct: 259 YTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNILYVAQG-RDHPWLRSLALEANQLHWVA 317

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              +  ++   + C  KIR  Q D         +  + V F+  +     GQA VFY +D
Sbjct: 318 G--YPPSLP--YSCTAKIRYRQADQHCTLTAITNGYIKVIFDVPQYAATPGQAIVFYQND 373

Query: 372 SNEARVLGGGIIS 384
                 LGGG I+
Sbjct: 374 E----CLGGGTIT 382


>gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays]
          Length = 486

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 180/374 (48%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C   +D+  A+ VC
Sbjct: 75  LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAVC 134

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    + Y  G TP P V CN  +KF   L     LG D 
Sbjct: 135 DKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDY 194

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        ++ +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 195 IASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEV 254

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA +M L    + DSQ ICF+ + K+ + V+R      GI LE +    +G  LG H 
Sbjct: 255 RRLATQMALPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAE----SGDYLGIHR 310

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   +NW  + 
Sbjct: 311 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDN- 368

Query: 315 LFEDAVVDGFKCFVKIRSSQD-----PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
            F     +  KC  K+R S +      V    + N D + V   + + G+A+GQ   FY+
Sbjct: 369 -FGPGNNEQLKC--KVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYS 425

Query: 370 SDSNEARVLGGGII 383
               E   LG GII
Sbjct: 426 ----ENVCLGSGII 435


>gi|212721228|ref|NP_001131207.1| hypothetical protein LOC100192515 [Zea mays]
 gi|194690872|gb|ACF79520.1| unknown [Zea mays]
          Length = 486

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 181/377 (48%), Gaps = 30/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C   +D+  A+ VC
Sbjct: 75  LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAVC 134

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    + Y  G TP P V CN  +KF   L     LG D 
Sbjct: 135 DKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDY 194

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        ++ +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 195 IASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEV 254

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA +MGL    + DSQ ICF+ + K+ + V+R      GI LE +    +G  LG H 
Sbjct: 255 RRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAE----SGDYLGIHR 310

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWL--- 311
           G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   +NW    
Sbjct: 311 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNC 369

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQD-----PVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           G G  E       KC  K+R S +      V    + N D + V   + + G+A+GQ   
Sbjct: 370 GPGNNEQ-----LKC--KVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAA 422

Query: 367 FYTSDSNEARVLGGGII 383
           FY+    E   LG GII
Sbjct: 423 FYS----ENVCLGSGII 435


>gi|319944511|ref|ZP_08018782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lautropia mirabilis ATCC 51599]
 gi|319742224|gb|EFV94640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lautropia mirabilis ATCC 51599]
          Length = 393

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 185/392 (47%), Gaps = 44/392 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDS+V A LLK  G+ V G+ ++ +     S+    C + QD  DA  V D
Sbjct: 12  QIVVGLSGGVDSAVSAWLLKEAGWQVTGLFMKNWEDDDDSEY---CSSRQDWLDAASVAD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   +R  V   F  +Y AG TP P + CN  +KF   L     LGA+ +
Sbjct: 69  VIGIDLEAVNFAADYRERVFSLFLQAYEAGFTPNPDILCNAEIKFKAFLDHALALGAERI 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R  +G DG  +  + R  D  +DQSYFL    Q QL    FPL  + K  VR
Sbjct: 129 ATGHYAGNR--IGPDGLAQ--LLRGADANKDQSYFLHRLNQYQLSRAVFPLAGITKPEVR 184

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A  +GL  A K DS  ICF+ +  + + + R        G +V   G  +G H G+  
Sbjct: 185 EIAARIGLPNATKKDSTGICFIGERPFREFLSRYLP--TKPGPMVDDRGVQVGEHVGLSF 242

Query: 262 YTIGQRRGLGV------AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           YT+GQR+G+G+      A G P FV   D  S+ +IV        L   R+  R+++W+G
Sbjct: 243 YTLGQRKGIGIGGRRDNADGTPWFVAGKDLASNTLIVVRGHDHPLLLTQRLAARDVHWIG 302

Query: 313 DGLFEDAVVDGFKC---------FVKIRSSQ-----DPVP-------VFVQRNDDGVYVD 351
               E     G KC         +V+  S +     D  P          ++    + V 
Sbjct: 303 AAP-EPGHPYGVKCRYRQQDAEGWVQSSSPEEGAATDATPAGASAAVTGAEKPPSRIEVG 361

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           F + +  V  GQ+ VFY  +      LGG +I
Sbjct: 362 FAEPQWAVTPGQSVVFYDGEV----CLGGAVI 389


>gi|217077941|ref|YP_002335659.1| tRNA methyl transferase [Thermosipho africanus TCF52B]
 gi|217037796|gb|ACJ76318.1| tRNA methyl transferase [Thermosipho africanus TCF52B]
          Length = 321

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 177/334 (52%), Gaps = 22/334 (6%)

Query: 53  QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           ++Y ++K + +   CC+  D YDA+++ +   V   V   E+ FR  VI  F S Y  G+
Sbjct: 7   EIYLTKKITHK--VCCSPSDTYDAKKIAEKFGVDFKVVHLEDDFREMVINYFVSEYKRGK 64

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           TP PC  CN  +KF  L+    + G D +A+GHY      +  +GK    + +    E+D
Sbjct: 65  TPNPCFFCNDWIKFGVLMEKMFEDGMDYVASGHYA-----IIKNGK----LYKAKSYEKD 115

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           QSYFL +  +++L  +  P G+  K+ +R++A ++G+ + +K DSQD+CF+  G   + +
Sbjct: 116 QSYFLASIKKEKLKKIILPNGEYTKQQIREIAEKIGIHVHNKVDSQDLCFIPDGNISEFL 175

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
           +  N     EG I+   G I+G H G+ NYTIGQR+ +GVA G  L+V+  D  ++ +IV
Sbjct: 176 RENNMEFK-EGLIIDTEGNIIGTHKGLANYTIGQRK-IGVATGRRLYVIKKDFKNNILIV 233

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352
           G +ES    +  + + N+L +      V   F+ +VK+R     V       ++ +Y++ 
Sbjct: 234 GDKESAFSTKFTVLKPNFLQN------VSKDFEGYVKVRKKFKEVRCKAHFENERLYIET 287

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           ++    +  GQ  V Y  D +   V+  GII G 
Sbjct: 288 QEPIFAITPGQIAVVYGFDDS---VIVSGIIEGE 318


>gi|203288114|ref|YP_002223129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia recurrentis A1]
 gi|229486333|sp|B5RQ24|MNMA_BORRA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|201085334|gb|ACH94908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia recurrentis A1]
          Length = 354

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 185/374 (49%), Gaps = 36/374 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ + +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + + +E + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CKKFNVPYKIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++      + +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +R +A E+ L   ++ DSQ ICF+ + KY + +K  + G  L+G+I+    G+ILG HNG
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-ELKGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--------KNSSRVIVGPRESLEVHRIYLREINW 310
              +TIGQR+G+ ++ G P FV   D         NS+  +   +E   VH+      NW
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHK-----TNW 285

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +   L  + +        KIR  +  +   ++   D+ + V+ E+ + G++ GQ C+FY 
Sbjct: 286 INKPLKNNNLS------AKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYK 339

Query: 370 SDSNEARVLGGGII 383
            D      LGG  I
Sbjct: 340 ED----ECLGGAKI 349


>gi|301774935|ref|XP_002922890.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 190/394 (48%), Gaps = 50/394 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVA+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC  
Sbjct: 65  VVVALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCIADRDCEDAYRVCQI 121

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           +++  +   Y + + N V   F S Y  G TP P + CN+ +KFS         LGAD +
Sbjct: 122 LDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAV 181

Query: 142 ATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQQ 183
           ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q 
Sbjct: 182 ATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQD 241

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINA 237
            L    FPLG + K+ V+ +A E  L  +  K +S  ICF+ +  + + +      R   
Sbjct: 242 ALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILQYLQPRPGK 301

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-E 296
            I++E      + ++LG H G   YT+GQR  +   + EP +VV  D     V V PR +
Sbjct: 302 FISIE------DSKVLGTHKGWFLYTLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTD 354

Query: 297 SLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349
              ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V+
Sbjct: 355 HPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVW 411

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V   K+   +A GQ  VFY  D      LG G I
Sbjct: 412 VTAVKAVRALAPGQFAVFYKGDE----CLGSGKI 441


>gi|281202538|gb|EFA76740.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Polysphondylium pallidum PN500]
          Length = 465

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 197/381 (51%), Gaps = 30/381 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   + V +SGGVDS+V A LLK+ G+ V  V ++ ++ +      G C   +D  DA+ 
Sbjct: 69  KKPEICVGLSGGVDSAVTAYLLKKQGFKVQCVYIKSWDEKD---ELGYCTGEKDYSDAQD 125

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + +  Y  D+ + + N V   F   Y+ G TP P V CNR +KF+      + +GA
Sbjct: 126 VANRLQLPIYHADFVKEYWNRVFNSFLEEYSQGYTPNPDVFCNREIKFNVFYEYAKSIGA 185

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY  SRL   D+ +  R++ R +D  +DQSYFL  T  +QL    FP+GD  K 
Sbjct: 186 DMIATGHY--SRLQYDDELESARLL-RGVDPNKDQSYFLCMTEGRQLYRSLFPIGDYVKT 242

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256
            ++ LA ++G  +I  K+ S+ ICFV  GK   + + +   I L+ G  ++   Q +G+H
Sbjct: 243 DIKALANQLGYTNITAKTSSRGICFV--GKR-PLDEFLGTYINLQPGAFLNPLDQQVGQH 299

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---------ESLEVHRIYLRE 307
            G I YTIGQ+  +   + E   V  +DK+++ V V P          +SL+VHRI    
Sbjct: 300 KGAICYTIGQKANIS-GLEERYIVYKIDKDNNCVFVCPESLSKKYLMSQSLQVHRI--NW 356

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSS----QDPVPVFVQRNDDGVY-VDFEKSEVGVASG 362
           IN + + L    V    +C V+ RSS    +  +    +   + VY V  E+ E  VA G
Sbjct: 357 INGIPERLLTAGVPMKIRCQVRYRSSLVNGEISLEHLAENPQESVYSVQLEQPERAVAPG 416

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q    Y  +S+    LGG  +
Sbjct: 417 QILCIYEPESDVC--LGGASV 435


>gi|160883986|ref|ZP_02064989.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483]
 gi|156110716|gb|EDO12461.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483]
          Length = 378

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 181/402 (45%), Gaps = 60/402 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 114

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     + +  Y+              D ++DQ++FL+   Q  LC +  P+G
Sbjct: 115 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 164

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFV------------------------QQGKY 228
           D+ K   R  A E G   +A K DS  +CF                           G+ 
Sbjct: 165 DITKVEARVWAAEHGFQKVATKKDSIGVCFCPMDYRTFLKNWLAQNNEALAEEEQMMGEN 224

Query: 229 FDVVKRINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286
             +V    AG+     G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  ++  
Sbjct: 225 QALVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEINPE 284

Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRND 345
            + V++    +LE   ++L++ N +     ++  +      VKIR   Q+         D
Sbjct: 285 KNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITITPD 340

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             ++V   +    +A GQA  FY     +  +LGGGII  ++
Sbjct: 341 HLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 378


>gi|319791106|ref|YP_004152746.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus EPS]
 gi|315593569|gb|ADU34635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus EPS]
          Length = 366

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 183/380 (48%), Gaps = 35/380 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V 
Sbjct: 4   QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFIDAASVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+ 
Sbjct: 61  DVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    ++   R  + + +D  +DQSYFL    Q QL    FP+G++ K  V
Sbjct: 121 IATGHYARVRH---NEVTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEV 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A E+GL  A K DS  ICF+ +  + D + R    I+ E G I    G+ LG H G+
Sbjct: 178 RRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRY---ISKEPGPIKDDRGRKLGEHQGL 234

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLD--KNSSRVIVGP-RESLEVHRIY 304
             YT+GQR+GLG+                P FV   D  KN+  V+ G     L    + 
Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDIEKNTLWVVQGHDHPWLLSSALN 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
             + +W+     E      +    K R  Q      +  + +G + + F   +  V  GQ
Sbjct: 295 ADDASWVSG---EAPAAGSYGS--KARYRQADAGCELSDDANGAFSLRFGAPQWAVTPGQ 349

Query: 364 ACVFYTSDSNEARVLGGGII 383
           + V Y  +    R LGGG+I
Sbjct: 350 SAVLYDGE----RCLGGGVI 365


>gi|145628472|ref|ZP_01784272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.1-21]
 gi|144978942|gb|EDJ88628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.1-21]
          Length = 328

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 175/318 (55%), Gaps = 29/318 (9%)

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LG
Sbjct: 25  VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 84

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K
Sbjct: 85  ADYIATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEK 139

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+
Sbjct: 140 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHD 197

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307
           G++ +T+GQR+GLG+     A  E  +VV  D  ++ +IV      PR  L    +   +
Sbjct: 198 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQ 255

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ V
Sbjct: 256 LHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAV 311

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  ++     LGGGII+
Sbjct: 312 FYLGEA----CLGGGIIA 325


>gi|294055153|ref|YP_003548811.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614486|gb|ADE54641.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 356

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 185/368 (50%), Gaps = 23/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGGVDS+V A LLK  GY V G  ++ + + +A      C A QD+ D+R V  
Sbjct: 3   KVLVALSGGVDSAVAALLLKEQGYAVSGAYIRTWMNEEAPL--ADCPAQQDIEDSRAVAQ 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + + +    +   V+      Y  G TP P + CNR +KF    +     G D +
Sbjct: 61  HLGIDYEIVNLVNEYSEHVVNYLVDGYKRGITPNPDMMCNREMKFGIFQNYALSQGFDAM 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R   +  +DG     +   +D  +DQ+YFL    Q+Q+    FP+G+++K  VR
Sbjct: 121 ATGHYVRK--FKNEDGSFN--LLEGIDKNKDQTYFLALLKQEQIAKALFPVGELQKPRVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNGII 260
           +LA E  L  A K DSQ ICF+      ++ + +   I    G+IV+  G++LG+H G+ 
Sbjct: 177 ELAIEHQLPNAAKKDSQGICFLGD---MNINRFLEHYIEDRPGNIVNPEGKVLGQHRGLH 233

Query: 261 NYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            YT+GQRRG+GV      E   VV  +   + +IV   ++ +   ++ +E+   G     
Sbjct: 234 RYTMGQRRGIGVPSNTDNEFYVVVGFNMEQNELIVA-FDNPDSPGLFTQEVEVYGLSFVN 292

Query: 318 DAVVDGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             V +  +   K R   SSQ     +     D   V F++ +  +ASGQ    Y  ++  
Sbjct: 293 KPVTEACRLLAKPRYRDSSQ--AITYTPTGPDSAKVVFDEPQRALASGQILALYEGET-- 348

Query: 375 ARVLGGGI 382
             +LGGG 
Sbjct: 349 --LLGGGF 354


>gi|56808669|ref|ZP_00366393.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus pyogenes M49 591]
          Length = 299

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 12  IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 68

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 69  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  V
Sbjct: 129 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 184

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++
Sbjct: 185 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 242

Query: 261 NYT 263
            YT
Sbjct: 243 YYT 245


>gi|77165505|ref|YP_344030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
 gi|76883819|gb|ABA58500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
          Length = 391

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 182/373 (48%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A  L++ GY   G+ ++ +        +  C   QD  DA+ V  
Sbjct: 29  KVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVD---FADESECTVAQDREDAQAVTS 85

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L     LG  ++
Sbjct: 86  LLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 145

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D  + R  + +  D  +DQSYFL+   Q+QL    FPLG+++K  VR
Sbjct: 146 ATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 200

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +  L    K DS  ICF+ + ++ + + R     A  G++   + + +G+H+G++ 
Sbjct: 201 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPDKEWIGQHDGLMY 258

Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR--EINWLG 312
           YT+GQRRGLG+     + G P FVV   L +N+  V  G R    +  + L   +++W+ 
Sbjct: 259 YTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQG-RHHPWLKSLILEANQLHWVA 317

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      + C  KIR  Q      +    +G + V F   +     GQA VFY  D
Sbjct: 318 G----HPPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAATPGQAIVFYQDD 373

Query: 372 SNEARVLGGGIIS 384
                 LGGG I+
Sbjct: 374 E----CLGGGTIT 382


>gi|254434432|ref|ZP_05047940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani AFC27]
 gi|205822273|sp|Q3J9J6|MNMA_NITOC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|207090765|gb|EDZ68036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani AFC27]
          Length = 367

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 182/373 (48%), Gaps = 29/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A  L++ GY   G+ ++ +        +  C   QD  DA+ V  
Sbjct: 5   KVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVD---FADESECTVAQDREDAQAVTS 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L     LG  ++
Sbjct: 62  LLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D  + R  + +  D  +DQSYFL+   Q+QL    FPLG+++K  VR
Sbjct: 122 ATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A +  L    K DS  ICF+ + ++ + + R     A  G++   + + +G+H+G++ 
Sbjct: 177 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPDKEWIGQHDGLMY 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR--EINWLG 312
           YT+GQRRGLG+     + G P FVV   L +N+  V  G R    +  + L   +++W+ 
Sbjct: 235 YTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQG-RHHPWLKSLILEANQLHWVA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      + C  KIR  Q      +    +G + V F   +     GQA VFY  D
Sbjct: 294 G----HPPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAATPGQAIVFYQDD 349

Query: 372 SNEARVLGGGIIS 384
                 LGGG I+
Sbjct: 350 E----CLGGGTIT 358


>gi|253564435|ref|ZP_04841892.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5]
 gi|251948211|gb|EES88493.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5]
 gi|301161234|emb|CBW20772.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 638R]
          Length = 364

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 36/381 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLKQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246
             R  A   G + ++ K DS  +CF     Y   +K+         N  I  +   G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGS 386
            FY     +  +LGGGII+ S
Sbjct: 345 AFY----KDGLLLGGGIITMS 361


>gi|237709059|ref|ZP_04539540.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456755|gb|EEO62476.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 364

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 182/376 (48%), Gaps = 40/376 (10%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A+ + + + + 
Sbjct: 1   MSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEAKALAERLGIE 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q     ++TGHY
Sbjct: 60  HHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTGHY 119

Query: 147 IR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            R      +LY+  GDD              +DQSYFL+   Q+ L    FPLG   K+ 
Sbjct: 120 CRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFLFPLGTYTKQE 167

Query: 200 VRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           VR+  R+ G +  A   +S +ICF+ +G Y + ++     I  +   G  V+  G  +G+
Sbjct: 168 VREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWFVNSKGVKIGQ 226

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +      
Sbjct: 227 HKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYHI----- 281

Query: 316 FEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               + D  +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY   
Sbjct: 282 --TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYEG- 338

Query: 372 SNEARVLGGGIISGSK 387
               RVLGG  I+  +
Sbjct: 339 ---KRVLGGAFIASQR 351


>gi|237724458|ref|ZP_04554939.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. D4]
 gi|229437327|gb|EEO47404.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides dorei 5_1_36/D4]
          Length = 364

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 186/378 (49%), Gaps = 44/378 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGG+DSS    +L+  GY+V+GVT++ ++  SR ++  +       DV +A+ + + + 
Sbjct: 1   MSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQDE---PDDVLEAKALAERLG 57

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q     ++TG
Sbjct: 58  IEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTG 117

Query: 145 HYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           HY R      +LY+  GDD              +DQSYFL+   Q+ L    FPLG   K
Sbjct: 118 HYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFLFPLGTYTK 165

Query: 198 ESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQIL 253
           + VR+  R+ G +  A   +S +ICF+ +G Y + ++     I  +   G  V+  G  +
Sbjct: 166 QEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWFVNSKGVKI 224

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +    
Sbjct: 225 GQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYHI--- 281

Query: 314 GLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                 + D  +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY 
Sbjct: 282 ----TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYE 337

Query: 370 SDSNEARVLGGGIISGSK 387
                 RVLGG  I+  +
Sbjct: 338 G----KRVLGGAFIASQR 351


>gi|53711506|ref|YP_097498.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81383903|sp|Q64ZW2|MNMA1_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|52214371|dbj|BAD46964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacteroides fragilis YCH46]
          Length = 364

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 36/381 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246
             R  A   G + ++ K DS  +CF     Y   +K+         N  I  +   G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGS 386
            FY     +  +LGGGII+ S
Sbjct: 345 AFY----KDGLLLGGGIITMS 361


>gi|301605226|ref|XP_002932238.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Xenopus
           (Silurana) tropicalis]
          Length = 418

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 191/388 (49%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV AMSGGVDSSV A LL+R GY+V GV +   N+  A    G C A +D  DA RVC 
Sbjct: 6   RVVCAMSGGVDSSVAALLLRRRGYEVTGVFM---NNWDAVDEHGVCSAERDCEDAYRVCK 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +   Y + + + V   F + Y  G TP P + CN+ +KF+  LS     LGAD 
Sbjct: 63  KLDIPFHQVSYVKEYWHEVFSYFLNEYEKGRTPNPDILCNKHIKFNHFLSYAIDILGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEIFQQKYIKSPQNLFRNRFEIRHDAKLLQAADRIKDQTFFLSQISQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG++ K+ V+ +A E G   +  + +S  ICF+ +  + + +  +    A 
Sbjct: 183 YALRKTIFPLGELTKDFVKKIAAEAGFHHVLKRKESMGICFIGERNFENFI--LEYLEAQ 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299
            G+ V   +G+I+GRH G   +T+GQR  +G    +  FVV  D  +  V V P  +   
Sbjct: 241 PGNFVSAEDGKIMGRHKGWFLFTLGQRARIG-GQRDAWFVVDKDVTTGNVYVAPTTDHPA 299

Query: 300 VHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           ++R  LR   ++WL +   ++ V +   +C  + +     VP  +  N DG V+    K 
Sbjct: 300 LYRDLLRTDRMHWLSEDPPDELVKNKMMECHFRFQHQMALVPCVLTLNQDGTVWATLVKP 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +  GQ  VFY  +      LG G I
Sbjct: 360 IRALTPGQFAVFYKGEE----CLGSGKI 383


>gi|265764899|ref|ZP_06093174.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|263254283|gb|EEZ25717.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 364

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 36/381 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246
             R  A   G + ++ K DS  +CF     Y   +K+         N  I  +   G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGS 386
            FY     +  +LGGGII+ S
Sbjct: 345 AFY----KDGLLLGGGIITMS 361


>gi|116515102|ref|YP_802731.1| hypothetical protein BCc_166 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285502|sp|Q057R1|MNMA_BUCCC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116256956|gb|ABJ90638.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 373

 Score =  166 bits (419), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 195/372 (52%), Gaps = 33/372 (8%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           AMSGGVDSSV A LL + GY V G+ ++ ++   ++     C +  D  D ++VC T+N+
Sbjct: 13  AMSGGVDSSVSAWLLLKQGYQVEGLFMKNWDEDDSN---DYCSSKIDFNDVKKVCKTLNI 69

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATG 144
             +  ++ E +   V + F   +  G TP P + CN+ +KF+  L  + + L +D  ATG
Sbjct: 70  PLHTINFSEEYWENVFLNFLKEHKKGNTPNPDILCNKIIKFNICLKFSLKYLKSDYFATG 129

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY + +       K+   + R  D ++DQSYFL+    + L  + FPL   KK+ +R +A
Sbjct: 130 HYAKIK-----KTKKNFYLYRAHDKKKDQSYFLYTLKSKILSKIIFPLAYFKKKKIRKIA 184

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNGIINYT 263
           +++ L +  K DS  ICF+Q  K+   +K+ I   I   G I+ ++ + LG H G   YT
Sbjct: 185 KKIKLSVYKKKDSTGICFIQPKKFNSFLKQYIPQKI---GKILTMSKEFLGLHLGYEFYT 241

Query: 264 IGQRRGLGVAM------GEPLFVVYLD--KNSSRVIVGPRESLEVHRIYL-REINWLGDG 314
           IGQR+GL +          P +VV  D   N   V+ G R    +   +L ++I+++ D 
Sbjct: 242 IGQRKGLNIGGKKKKKNAYPWYVVKKDIYLNIIFVVQGLRNPYLLSYGFLTKKIHYINDN 301

Query: 315 LFEDAVVDGFKCFVKIRSSQDPV--PVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +F        KC V+I+  Q+P+    F + + ++ + V F+K  + V  GQ+ VFY  +
Sbjct: 302 IFYFKK----KCVVQIKYRQEPIICEFFKISKKNNYIKVIFKKPILYVTPGQSAVFYLKN 357

Query: 372 SNEARVLGGGII 383
               + LGG II
Sbjct: 358 ----KCLGGSII 365


>gi|290999445|ref|XP_002682290.1| predicted protein [Naegleria gruberi]
 gi|284095917|gb|EFC49546.1| predicted protein [Naegleria gruberi]
          Length = 408

 Score =  166 bits (419), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 38/394 (9%)

Query: 15  DKNPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +K P+  +R+VV MSGGVDSS+ A LLK  G+DV+ + ++ ++S +    +  C   +D 
Sbjct: 25  EKKPRGQIRIVVGMSGGVDSSLTACLLKEFGFDVVSLHMRNWDSSEEDPSREHCTFTKDW 84

Query: 74  YDARRVCDTINVSH-----YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            D + +C+T  + H     +  ++ +++ N V       Y+ G+TP P + CN+ +KF  
Sbjct: 85  NDVKVICETFGIKHVGSSFHPVEFIDQYWNDVFEKLLDGYSIGQTPNPDLFCNKFIKFDA 144

Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLC 186
           +L+    + GAD +ATGHY  ++L   D+G+     + R +D  +DQSYFL    ++   
Sbjct: 145 MLNYAIEKGGADYIATGHY--AQLGYSDNGETSNTHLLRAIDHSKDQSYFLSFVNKKAFE 202

Query: 187 DLRFPLGD-MKKESVRDLARE---MGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIAL 241
              FPLG  +KKE VR LAR+      ++  + DS  ICF+ + K+ D + K I++    
Sbjct: 203 KSLFPLGQFLKKEEVRVLARDHFKFPNELWGRKDSVGICFIGKRKFKDFLSKYIDSS--- 259

Query: 242 EGDIVHLNGQ--ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RE 296
           +G+IV +  +  ILG H+G   YTIGQ   L   M E  FV   D  ++ + V P     
Sbjct: 260 KGNIVSIEDKTTILGEHDGASFYTIGQGMCLS-GMKEKWFVCEKDFKNNILYVCPGNNHP 318

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDG-----VYV 350
           SL      +   +WL      + + +  + FVK+R +Q +P    V  ++D         
Sbjct: 319 SLLKSSFTISNCHWL------ENIDNSKEYFVKVRYNQREPFRCKVSYSNDSSLCDITLA 372

Query: 351 DFEKSEVGVASGQACVFYTSDS--NEARVLGGGI 382
           D E+   G+ASGQ  V Y S+S  +E   +GGGI
Sbjct: 373 DSEEPARGIASGQIAVLYDSNSQFSEQICVGGGI 406


>gi|237720472|ref|ZP_04550953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|293368878|ref|ZP_06615481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|229450223|gb|EEO56014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|292636027|gb|EFF54516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 385

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 182/409 (44%), Gaps = 67/409 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC+ CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCILCNNYLKWPLLAKIADEMGV 114

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     + +  Y+              D ++DQ++FL+   Q  LC +  P+G
Sbjct: 115 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 164

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQ--------------------------- 225
           D+ K   R  A E G   +A K DS  +CF                              
Sbjct: 165 DITKVEARVWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKNWLAQNNEALAEEEQMMGEN 224

Query: 226 ----GKYFDVVKRINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
               G +  +V    AG+     G  V   G  +  H G   YTIGQRRGLG+ +  P+F
Sbjct: 225 QALVGDWQVLVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 284

Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338
           V  ++   + V++    +LE   ++L++ N +     ++  +      VKIR   Q+   
Sbjct: 285 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 340

Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                 D  ++V   +    +A GQA  FY     +  +LGGGII  ++
Sbjct: 341 TITITPDHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 385


>gi|60679769|ref|YP_209913.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|81317158|sp|Q5LIS5|MNMA1_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|60491203|emb|CAH05951.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis NCTC 9343]
          Length = 364

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 184/379 (48%), Gaps = 36/379 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246
             R  A   G + ++ K DS  +CF     Y   +K+         N  I  +   G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIIS 384
            FY     +  +LGGGII+
Sbjct: 345 AFY----KDGLLLGGGIIT 359


>gi|167721162|ref|ZP_02404398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei DM98]
          Length = 296

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 138/271 (50%), Gaps = 15/271 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIV 292
           R+G+G+       GEP FV   D  S+ + V
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYV 261


>gi|124268750|ref|YP_001022754.1| tRNA-specific 2-thiouridylase MnmA [Methylibium petroleiphilum PM1]
 gi|166234857|sp|A2SLT0|MNMA_METPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|124261525|gb|ABM96519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylibium petroleiphilum PM1]
          Length = 396

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 188/406 (46%), Gaps = 52/406 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +      +    C + QD  DA  
Sbjct: 4   KKERVVVGLSGGVDSAVSAWLLKQQGHEVVGLFMKNWEDDDDDE---YCSSRQDFLDAAS 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +R+ V   F   Y AG TP P V CN  +KF   L    +LGA
Sbjct: 61  VADVIGIEIEHVNFAAEYRDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHALRLGA 120

Query: 139 DVLATGHYIRSR----LYVGDDGK----------RRRI--------MCRPMDLERDQSYF 176
             +ATGHY R R    L    DG           R R+        + + +D  +DQSYF
Sbjct: 121 GKIATGHYARVRRAPALPGMPDGPLDESSAGALDRARVREAGGRFELLKGLDASKDQSYF 180

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           L   +Q QL    FP+G++ K  VR +A E+ L +A K DS  ICF+ +  + + + R  
Sbjct: 181 LHRLSQAQLARTLFPVGELPKTEVRRIAAEIRLPVAAKKDSTGICFIGERPFREFLNRYL 240

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV------------AMGEPLFVVYLD 284
           A     G I    G+ LG H G+  YT+GQR+G+G+            A   P FV   D
Sbjct: 241 A--HAPGPIKDERGRTLGEHVGLSFYTLGQRKGIGIGGVKERGAARGGADHAPWFVARKD 298

Query: 285 K--NSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           +  N+  V+ G     L+  R+   + +W+         +       K R  Q      +
Sbjct: 299 RPHNTLYVVQGHDHPWLQSFRLEADDASWIAGTPPAPGALA-----AKTRYRQADASCVL 353

Query: 342 QRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
               DG + +DF   +  V  GQ+ V Y  +      LGGG+I+ +
Sbjct: 354 APGADGRFRLDFGVPQWAVTPGQSAVLYDGEV----CLGGGVIAAA 395


>gi|196019212|ref|XP_002118942.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens]
 gi|190577616|gb|EDV18572.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens]
          Length = 136

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 91/126 (72%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSS VAA+L    Y+VIG+TLQLY++ + + +KG+CCAGQD+YDA+   D 
Sbjct: 1   VVVAMSGGVDSSTVAAMLHEQNYEVIGITLQLYDAGEMAAKKGACCAGQDIYDAKVAADK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + HYV +YE  F   VI  FA SY  GETP+PCV CN+ VKF DL    + LGA  LA
Sbjct: 61  IGIPHYVLNYESLFSKKVIEDFAESYIKGETPIPCVKCNQKVKFEDLYKTAKNLGAKALA 120

Query: 143 TGHYIR 148
           TGHY+R
Sbjct: 121 TGHYVR 126


>gi|187735150|ref|YP_001877262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Akkermansia muciniphila ATCC BAA-835]
 gi|205811102|sp|B2UPK4|MNMA_AKKM8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187425202|gb|ACD04481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 357

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/275 (39%), Positives = 142/275 (51%), Gaps = 12/275 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++V +SGGVDSSV AALL   G+DV+G  ++  N        G C   QD+ DA  V  
Sbjct: 3   RILVGLSGGVDSSVAAALLVEQGHDVVGAYMK--NWVNDEGIPGECPWEQDIQDALAVAK 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T  +   V D  + +R  ++      Y AG TP P V CNR +KF   L    + G D +
Sbjct: 61  TTGIEFRVIDLVDEYRARIVNYLIEGYRAGYTPNPDVLCNREMKFGVFLDYALEQGFDYV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       D  +   + R  D  +DQSYFL      Q+    FPLGD+ K  VR
Sbjct: 121 ATGHYARRM-----DTPQGAFILRGRDPNKDQSYFLSLMRPDQIARAVFPLGDLLKPEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL  A K DSQ ICF+ Q K  D ++         G+IV   G+ LG HNG+  
Sbjct: 176 VLAEKYGLPTARKKDSQGICFIGQVKMSDFLRHYLPDKP--GNIVDTEGRTLGTHNGLHL 233

Query: 262 YTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG 293
           +T+GQR+G GVA    G    VV  D   +R+I+G
Sbjct: 234 FTMGQRKGHGVASPREGVAYVVVGKDVRRNRLILG 268


>gi|294102033|ref|YP_003553891.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Aminobacterium colombiense DSM 12261]
 gi|293617013|gb|ADE57167.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Aminobacterium colombiense DSM 12261]
          Length = 352

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 185/370 (50%), Gaps = 31/370 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGG+DS+V + LLK+ GY+V+GV   L  + ++   +           A  +  
Sbjct: 4   KVLVGMSGGLDSAVTSLLLKKQGYEVVGVFFALSGADESVAER----------QAADLAQ 53

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++   V+D  E F+  V+    S+Y  G TP PC+ CN +VKF  L  +  Q     +
Sbjct: 54  KLDIKFEVYDGRELFQKNVLTKLLSAYEKGMTPNPCILCNPSVKFKLLFFLAEQKAIPYV 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY  +R+   + G     + R +D ++DQSY L+   ++ L  + FPLGD++KE VR
Sbjct: 114 ATGHY--ARIVEEESGP---AIARGVDEKKDQSYMLYRLPREWLSSIVFPLGDLRKEEVR 168

Query: 202 DLAREMGLD-IADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           ++A+    + +  K +SQD+CF  +G   F      +      G I+  +G+ +G HNG+
Sbjct: 169 EIAKSFLPEWVVQKKESQDVCFAPEGLDDFLNFHLSDKKTCQPGSIMDESGKEIGTHNGL 228

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG+  G P FVV  +   + + V  ++ L   RI      W    +    
Sbjct: 229 WRYTIGQRKGLGLP-GGPWFVVSKNIVHNILRVSRKKELSSLRI------WCEAPVMYRY 281

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV--DFEKSEVGVASGQACVFYTSDSNEARV 377
           + +G     + R    P  V ++   +   V    E   V VA GQ+ V Y  D     V
Sbjct: 282 LTEGAFYMAEHRYRTRPFSVMIESVTEQAMVVRGVEICPV-VAPGQSLVLYNKDV----V 336

Query: 378 LGGGIISGSK 387
            GGGII  S+
Sbjct: 337 CGGGIIISSE 346


>gi|302690264|ref|XP_003034811.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8]
 gi|300108507|gb|EFI99908.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8]
          Length = 350

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 179/367 (48%), Gaps = 30/367 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A L+   GYDV G+ ++ +++R  S     C   +D  D +RV       
Sbjct: 1   MSGGVDSSVTAKLMLDQGYDVSGIYMRNWDTRDESGTDEGCEWKKDWNDVQRV------- 53

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLATG 144
               D  + + N V  P   ++A+G TP P V CNR VKF  L      L A+    ATG
Sbjct: 54  ----DLSKEYWNRVFQPSLDAWASGVTPNPDVLCNRHVKFGALHEHMGLLAAEDTWFATG 109

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R     G     R  +   +D  +DQSY+L +  +  L    FPLG + K  V+ LA
Sbjct: 110 HYARKSWSNG-----RPTLLAGLDPVKDQSYYLASICESNLRPALFPLGTLHKSEVKRLA 164

Query: 205 REMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINY 262
           RE  L +AD+ +S  ICFV Q+GK+ + + +   G A  G I  L  G+ +G H G+ NY
Sbjct: 165 REFKLPVADRKESMGICFVGQKGKFKEFLSKYLEGKA--GSIRSLETGEEIGGHEGLWNY 222

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG-DGLFED 318
           T+G+R  +   M +  +V   D  ++ V V P     +L      +   +W+  D   ED
Sbjct: 223 TVGERARI-PNMLQRWYVADKDTENNIVYVVPGPDHPALFKRSTSVDHFDWIWKDAPPED 281

Query: 319 A-VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +DG K FVK      P    V+R   GV +  ++    V+ GQ  V Y  D  E RV
Sbjct: 282 IDSLDGLKAFVKFIYRMSPTRCTVRRQGQGVQILLDEPMRDVSLGQVAVIYHGD--ERRV 339

Query: 378 LGGGIIS 384
           LG G I+
Sbjct: 340 LGCGTIT 346


>gi|295099800|emb|CBK88889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cylindroides T2-87]
          Length = 386

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 29/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDV 73
           M+V+V +SGGVDS+V A LLK  GYDV    ++ ++S       G       +C   QD 
Sbjct: 1   MKVLVGLSGGVDSAVAAYLLKEQGYDVTCCFMRNWDSYANGDIAGNPTIQDDTCPQEQDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V + +N+     D+ + + + V   F S Y  G TP P + CN+ +KF       
Sbjct: 61  QDAKAVAEHLNLPLQRVDFIKEYWDYVFKTFLSEYEKGRTPNPDILCNKYIKFDAFFDYA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G D++ATGHY  S +  G        + R  D  +DQ+YFL   +   L    FPLG
Sbjct: 121 MKQGFDMVATGHYC-SNMTEG----SFTYLTRAADTNKDQTYFLCQVSPAALHKTLFPLG 175

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251
            + K  VR++A ++ L+ +A K DS  ICF+ +  +   +   N   + +G+IV ++ G+
Sbjct: 176 KLIKPEVREIAAKLNLESVATKKDSTGICFIGERNFRQFLS--NYLPSQDGNIVDVDTGK 233

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           ++GRH G++ YTIGQR+GL +   + P FV+  D   + + V     +E L      ++ 
Sbjct: 234 VVGRHVGVLYYTIGQRKGLNIDHEKGPWFVIGKDVQKNVLFVCHHTHKEWLYSDSCLVKG 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACV 366
           INW    + +D      KC  K R  Q    ++++  DD    V + +    V  GQ  V
Sbjct: 294 INW----IVKDKNEIPEKCTCKFRYRQPDQDIYLKVLDDTTALVSYPQKIASVTIGQEAV 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY    +  + +GGG+I
Sbjct: 350 FY----DGFKCIGGGVI 362


>gi|19114314|ref|NP_593402.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Schizosaccharomyces pombe 972h-]
 gi|3122971|sp|O13947|MTU1_SCHPO RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|2388924|emb|CAB11659.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Schizosaccharomyces pombe]
          Length = 415

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 192/406 (47%), Gaps = 41/406 (10%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S+A + +S  L       +V VAMSGGVDSS  A LLK  GY+V GV ++ +    ++  
Sbjct: 15  SKAFQPHSTRLQWPKSQDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDSAP- 73

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A +D    ++VC  +N+S   F++E+ + N V  P    Y  G TP P V CNR 
Sbjct: 74  -SGCPAERDWATVQKVCKKLNISCRRFNFEKEYWNLVFEPSLDLYENGLTPNPDVSCNRQ 132

Query: 124 VKFSDLLSVTRQL------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           VKF  L    ++       G   LA+GHY +S + +  +      MC P D  +DQ+ FL
Sbjct: 133 VKFGALFDALKKHCENNVKGDWWLASGHYAKSVVNIETNESH---MCIPTDKRKDQTLFL 189

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQG---------- 226
               ++ L    FPL +  KE+V+  A   G  +IA+K +SQ +CFV             
Sbjct: 190 CTIRKEALEKTIFPLHNWTKENVKKQASSAGFKEIAEKQESQGLCFVSPNVGRKFRKFLQ 249

Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFV--VYLD 284
           +Y +   R    IA +  +    G+  G H GI + T+G+R GL +   +  +    Y+ 
Sbjct: 250 RYLNFSDRPIKVIAGKNVV----GEFSGNH-GIWSLTVGERCGLSLPQAQSEYFGRWYVW 304

Query: 285 K-----NSSRVIVGPRESLEVHR-IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338
           K     N+  +  G    L + + IYL++  W G  L ++       CFV++R  Q   P
Sbjct: 305 KKDIKNNALYICRGTNNELLMSKCIYLKDWKWCGTKL-QNLEKSALSCFVRVRHQQPLQP 363

Query: 339 VFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             V  RN + V + F+  +  V  GQ    Y +D      LGGG++
Sbjct: 364 AKVTWRNPESVKIHFQDKQRAVTPGQVIAVYVNDV----CLGGGMV 405


>gi|313678598|ref|YP_004056338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma bovis PG45]
 gi|312950108|gb|ADR24703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma bovis PG45]
          Length = 374

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 180/376 (47%), Gaps = 34/376 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S   +   G+       C   QD +
Sbjct: 6   KVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQDYH 65

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA  V + + +  +  D+   + N V   F S Y AG TP P + CN+ +KF        
Sbjct: 66  DALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDYAF 125

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +A GHY +       DG+    + R  D  +DQ+YFL   + +QL  +  PL 
Sbjct: 126 NNLGADYIAMGHYAKVT-----DGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMPLA 176

Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NG 250
           +   KE VR +A+E GL  A K DS  ICF+ + K+    K +   I ++ GDIV +   
Sbjct: 177 EFNSKEEVRKIAQEQGLITASKKDSTGICFIGERKF---TKFLQNYIPMQPGDIVDIRTN 233

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
             LG+H G   YTIGQR+GL +    EP +V   D   + + V P   L     YL    
Sbjct: 234 NKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLS----YLTSDA 289

Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
            L  GL       D      K R  Q+ +PV ++   ++ + V +      V  GQ  V 
Sbjct: 290 LLATGLTLNHNDFDHNNLSAKFRYRQENIPVTIELLPNNTIKVYYPSEAQAVTPGQQVVI 349

Query: 368 YTSDSNEARVLGGGII 383
           Y       + LGG +I
Sbjct: 350 YEGQ----KCLGGAVI 361


>gi|31542641|ref|NP_060476.2| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens]
 gi|8134740|sp|O75648|MTU1_HUMAN RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;
           AltName: Full=MTO2 homolog
 gi|4469186|emb|CAB38414.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo
           sapiens]
 gi|17149283|gb|AAL35970.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo
           sapiens]
 gi|17432490|gb|AAL38183.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo
           sapiens]
 gi|54633233|dbj|BAD66875.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens]
 gi|119593828|gb|EAW73422.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_a [Homo sapiens]
 gi|158254860|dbj|BAF83401.1| unnamed protein product [Homo sapiens]
          Length = 421

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 190/395 (48%), Gaps = 50/395 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ +                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R  
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR 
Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 295

Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V
Sbjct: 296 DHPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +V   ++   +A+GQ  VFY  D      LG G I
Sbjct: 353 WVTAVQAVRALATGQFAVFYKGDE----CLGSGKI 383


>gi|299147036|ref|ZP_07040103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|298514921|gb|EFI38803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 384

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 181/409 (44%), Gaps = 67/409 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFNKQIIDYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 113

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     + +  Y+              D ++DQ++FL+   Q  LC +  P+G
Sbjct: 114 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 163

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQ--------------------------- 225
           ++ K   R  A E G   +A K DS  +CF                              
Sbjct: 164 NITKVEARAWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKNWLAQNSEALAEEEQMMGEN 223

Query: 226 ----GKYFDVVKRINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
               G +  +V    AG+     G  V   G  +  H G   YTIGQRRGLG+ +  P+F
Sbjct: 224 QALVGDWQALVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 283

Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338
           V  ++   + V++    +LE   ++L++ N +     ++  +      VKIR   Q+   
Sbjct: 284 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 339

Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                 D  ++V   +    +A GQA  FY     +  +LGGGII  ++
Sbjct: 340 TITITPDHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 384


>gi|325128645|gb|EGC51514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis N1568]
          Length = 367

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 184/383 (48%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   NP +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308
            +G H G++ YT+GQR+       GEP FV    L KN   V+ G    L    +Y R +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284

Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
             N L   L E      + C  + R +  P  +     +    V F++ +  V  GQ+ V
Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362


>gi|253683532|ref|NP_001156660.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
 gi|296486862|gb|DAA28975.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
          Length = 417

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 191/395 (48%), Gaps = 52/395 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC  
Sbjct: 7   VVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADRDCEDAYRVCRI 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           +++      Y + + N V   F + Y  G TP P + CN+ +KF    +     LGAD +
Sbjct: 64  LDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFRCFFNYAVDNLGADAV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLER-------------------DQSYFLFATTQ 182
           ATGHY R+ L   +  +++ I  RP  L R                   DQ++FL    Q
Sbjct: 124 ATGHYARTSLEDEEVFQQKHIK-RPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVPQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
           + L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +  + + +      R  
Sbjct: 183 EALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V+V PR 
Sbjct: 243 RFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPRT 295

Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V
Sbjct: 296 DHPALYRDLLRTGRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +V   K+   +A GQ  VFY  D      LG G I
Sbjct: 353 WVTAVKAVRALAPGQFAVFYKGDE----CLGSGKI 383


>gi|242212937|ref|XP_002472299.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728576|gb|EED82467.1| predicted protein [Postia placenta Mad-698-R]
          Length = 356

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 176/372 (47%), Gaps = 31/372 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVA LL    YD+  V ++ +++R  S     C   +D  D +RVC  +++ 
Sbjct: 1   MSGGVDSSVVAKLLAEQDYDLSAVFMRNWDTRDESGTDKGCEWEKDWEDVQRVCKMLDIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLATG 144
             + D  +++   V  P    +  G+TP P + CNR VKF  L+    QL  D   +ATG
Sbjct: 61  CEMVDLSQQYWTRVFEPSLQLWEKGQTPNPDIWCNREVKFGALMD---QLTGDDVWVATG 117

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY     +        + + RP D  +DQ+Y+L A  +  L    FPL    K  VR +A
Sbjct: 118 HYADKSWFPC------KSLRRPRDRTKDQTYYLSAIPEASLARTIFPLAPFAKTEVRAMA 171

Query: 205 REMGLDIADKSDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261
           ++  L  A +++S  ICFV + + FD  + + I      +G I+ L  G+ LG H G+  
Sbjct: 172 KKWELPTAQRAESMGICFVGEKRRFDGFLSQYIT---PRQGPIIDLQTGKQLGTHTGLWT 228

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI-----NWLGDGLF 316
           YTIGQ   L   M E +FV   D   + + V P  +     +Y R +      W+     
Sbjct: 229 YTIGQNARL-PGMPERMFVAKKDAERNEIYVVPSSTHPA--LYSRSLIASAWQWIWRDHP 285

Query: 317 EDAVVD--GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              + D  GF   V+ R      P  +QR    +++ FE+ +  VA GQ    +  D   
Sbjct: 286 PGGIDDELGFHGRVQYRHRMLDAPATIQRRGHTIHITFEEPQQSVAPGQIAAVWDGDW-- 343

Query: 375 ARVLGGGIISGS 386
              LG GII+G+
Sbjct: 344 --CLGSGIITGT 353


>gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 178/380 (46%), Gaps = 30/380 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ VC
Sbjct: 75  LRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 134

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    S Y  G TP P V CN  +KF   L     LG D 
Sbjct: 135 DKIDVPLEVVHLSDEYWNHVVSHMISEYRNGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 194

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        ++ +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 195 IASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLRRLLFPLGCITKDEV 254

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQILGRHN 257
           R LA +M L    + DSQ ICF+ + K+ + V+       GI LE +     G  LG H 
Sbjct: 255 RSLAVQMNLPNQARKDSQGICFLGKVKFSEFVQAHIGEIEGILLEAE----TGDYLGTHR 310

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL ++ G P +VV  D  ++ V V     SL+  R   R   +NW  D 
Sbjct: 311 GFWFYTIGQRQGLRLS-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSDS 369

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-----------NDDGVYVDFEKSEVGVASGQ 363
              D   +  KC  K+R S D     V R           N D + V   + + G+A+GQ
Sbjct: 370 GPADN--ERLKC--KVRHSPDFHNCTVTREQTEELVVNSNNGDVLAVRLSEDDQGLAAGQ 425

Query: 364 ACVFYTSDSNEARVLGGGII 383
              FY     ++  LG GII
Sbjct: 426 FAAFY----RDSACLGSGII 441


>gi|218131789|ref|ZP_03460593.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697]
 gi|217986092|gb|EEC52431.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697]
          Length = 357

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 172/356 (48%), Gaps = 27/356 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79
           RV++ MSGG DSSV A  L   GY+V GVT + Y              G+  Y  DAR +
Sbjct: 13  RVLLGMSGGTDSSVAAMRLLDAGYEVTGVTFRFYE-----------VDGRTEYLDDARAL 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D +E FR  +I  F   Y AG TP+PC  CN  +K++ L  +  + G  
Sbjct: 62  AARLGIEHVTYDAQELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWALLARIADEKGIY 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY R  L +G+       +    D ++DQ++FL+   Q  L  +  P+GD+ KE 
Sbjct: 122 WISTGHYARKAL-LGEQC----YIAPASDRDKDQTFFLWGLKQDILQRMLLPMGDVTKEE 176

Query: 200 VRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL--NGQILGRH 256
            R  A   G   +A K DS  +CF     Y   +KR      L G  + +   G+ILGRH
Sbjct: 177 ARAYAAGRGFARVASKKDSIGVCFCPL-DYRSFLKREVPAERLPGKGLFIGEKGEILGRH 235

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YTIGQRRGLG+ +   +FV  +   ++ V++ P  SL    + L++ N +     
Sbjct: 236 EGYPFYTIGQRRGLGIHLNRAVFVKEVRTATNEVVLAPLASLYKDEMLLKDWNLVS---- 291

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           E  V+      VKIR  +      V    DG + V   +    +A GQA  FY +D
Sbjct: 292 EQRVLGMETVIVKIRYRKQANRCRVALMADGCLRVSLLEPLEAIAPGQAAAFYDAD 347


>gi|197294784|ref|YP_001799325.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma
           australiense]
 gi|226704773|sp|B1VAX7|MNMA_PHYAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171854111|emb|CAM12100.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Candidatus Phytoplasma australiense]
          Length = 375

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 186/377 (49%), Gaps = 32/377 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVYD 75
           +VVV +SGGVDS+V A LLK+ GY+V  V ++ ++S+     +G+      C    D  D
Sbjct: 3   KVVVGLSGGVDSAVSALLLKKAGYEVEAVFMRNWDSQLNFDFQGNPTLNDVCPQELDYKD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTR 134
           A +V   + +  +  ++ E +   V + F +++    TP P + CN  +KF   ++  T 
Sbjct: 63  ALKVSLQLGIKLHRVNFIEEYWQKVFLYFINAFKNNLTPNPDILCNNEIKFKAFINYATS 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L    +A GHY R    + D  ++  + C P+D  +DQ+YFL      QL ++ FPL D
Sbjct: 123 KLKPQYIAMGHYAR---LIYDKNQKVSLAC-PLDKNKDQTYFLSQLKTSQLKNILFPLAD 178

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K+ VR +A E GL  A K DS  ICF+ +  +F  +   N   A +G I  L+G  L 
Sbjct: 179 LTKKEVRKIALENGLINACKKDSTGICFIGERNFFQFLN--NYLPAQKGSIKRLDGTFLT 236

Query: 255 RHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            H G+I+YTIGQR+ LG+    +  EP FVV  +  ++ + V P      L   R  + +
Sbjct: 237 YHKGVIHYTIGQRKNLGLGNFSSGQEPFFVVGKNLKTNTLYVEPNSQHPHLYSDRALIID 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           + W G+           +   K+R  Q    V +   D + + + + +    V  GQ C 
Sbjct: 297 VTWRGEK-------TKTQIQAKMRYRQPNQKVTLNWLDANTLEILYPQKIKAVTPGQICA 349

Query: 367 FYTSDSNEARVLGGGII 383
           FY  D      LG G+I
Sbjct: 350 FYDDDI----CLGAGVI 362


>gi|317474596|ref|ZP_07933870.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909277|gb|EFV30957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 357

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 174/356 (48%), Gaps = 27/356 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79
           RV++ MSGG DSSV A  L+  GY+V GVT + Y              G+  Y  DAR +
Sbjct: 13  RVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYE-----------VDGRTEYLDDARAL 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR  +I  F   Y AG TP+PC  CN  +K++ L  +  + G  
Sbjct: 62  AARLGIEHVTYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWALLARIADEKGIY 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY R  L +G+       +    D ++DQ++FL+   Q  L  +  P+GD+ KE 
Sbjct: 122 WISTGHYARKAL-LGEQC----YIAPASDRDKDQTFFLWGLKQDILQRMLLPMGDVTKEE 176

Query: 200 VRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKR-INAG-IALEGDIVHLNGQILGRH 256
            R  A   G   +A K DS  +CF     Y   +KR + AG +  +G  +   G+ILG H
Sbjct: 177 ARAYAAGRGFARVASKKDSIGVCFCPL-DYRSFLKREVPAGRLPGKGLFIGEKGEILGSH 235

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YTIGQRRGLG+ +   +FV  +   ++ V++ P  SL    + L++ N +     
Sbjct: 236 EGYPFYTIGQRRGLGIHLNRAVFVKEVRTATNEVVLAPLASLYKDEMLLKDWNLVS---- 291

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           E  V+      VKIR  +      V    DG + V   +    +A GQA  FY +D
Sbjct: 292 EQRVLGMETVIVKIRYRKQANHCRVALMADGCLRVSLLEPLEAIAPGQAAAFYDAD 347


>gi|283769381|ref|ZP_06342280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bulleidia extructa W1219]
 gi|283104038|gb|EFC05422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bulleidia extructa W1219]
          Length = 378

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 184/364 (50%), Gaps = 33/364 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+++V +SGGVDS++ A LL++ G++V    ++ ++S       G+       C    D 
Sbjct: 1   MKILVGLSGGVDSAIAAYLLRQQGHEVTCAFMRNWDSVANGDFSGNPTLNDPVCSQESDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D + +     D+ + + + V   F + Y  G TP P + CNR +KF++ ++  
Sbjct: 61  ADAQAVADKLGLPLLRVDFIKEYWDDVFQTFLNDYKKGRTPNPDILCNRYIKFAEFMNFA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G + +ATGHY++     G       ++ +  D  +DQSYFL    ++ L  + FPL 
Sbjct: 121 QKKGFETVATGHYVKLGYENG-----HGVLMKADDRNKDQSYFLAEVHREVLDHVVFPLA 175

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-I 252
           +++K  VRD+A E+GL IA K DS  ICF+ +  +   +   N      G I+++  Q I
Sbjct: 176 EIEKPKVRDMAFELGLSIAKKKDSTGICFIGERNFRAFLS--NYLPMKPGKIMNIVEQKI 233

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR------ 306
           +G H G++ YTIGQR+GL +    P FVV  +  ++ + V  +E    HR +LR      
Sbjct: 234 VGEHKGVLYYTIGQRKGLDIGGIGPFFVVGKNVETNTLYVVDQE----HRSWLRSDSCLV 289

Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
             +NWL D +F            K R  Q    V +++ D+  + + + +    V  GQ 
Sbjct: 290 THVNWLADRMFP------LNGGAKFRYRQQDQAVTMEKVDEQTLLLKYPQGVEAVTPGQE 343

Query: 365 CVFY 368
            V Y
Sbjct: 344 AVLY 347


>gi|241767515|ref|ZP_04765194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax delafieldii 2AN]
 gi|241361655|gb|EER58004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax delafieldii 2AN]
          Length = 310

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 153/301 (50%), Gaps = 35/301 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA 
Sbjct: 4   PTKQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAA 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LG
Sbjct: 61  AVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY R R            + + +D  +DQSYFL    Q QL    FP+G++ K
Sbjct: 121 AEKIATGHYARVRQNAATGLFE---LLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDIVHLNGQILGR 255
             VR +A E+GL  A K DS  ICF+ +  + + + R   +A   ++ D     G+ LGR
Sbjct: 178 AEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYISHAPGPMQDD----RGRTLGR 233

Query: 256 HNGIINYTIGQRRGLGV----AMG-----------------EPLFVVY--LDKNSSRVIV 292
           H G+  YT+GQR+GLG+    A G                 EP FV    L+KN  RV+ 
Sbjct: 234 HVGLSFYTLGQRQGLGIGGVKAKGAELKAAQERGQRGVGEHEPWFVARKDLEKNVLRVVQ 293

Query: 293 G 293
           G
Sbjct: 294 G 294


>gi|256372326|ref|YP_003110150.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008910|gb|ACU54477.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 341

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 148/271 (54%), Gaps = 16/271 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVVAMSGGVDSSV A + +  G+DVIGVTL+L    +A+  +G CC+  DV DAR V  
Sbjct: 3   RVVVAMSGGVDSSVAALMAREAGHDVIGVTLRLT---EAAGDRG-CCSVGDVEDARTVAA 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++H V D    F  AV+ P+  ++  G TP PC+ CNR VK + L +  ++LGA  L
Sbjct: 59  LLGINHIVADMRAEFHRAVVEPYLDAHRRGWTPNPCMSCNRYVKVTALAAWAQRLGASRL 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY         DG  R ++ R  D  +DQSY L     + L  L  PLG++ K+ VR
Sbjct: 119 VTGHYATVL-----DGS-RPMLVRGRDRRKDQSYVLADVPPEVLARLWLPLGELSKDEVR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGII 260
             A   GL + DK DSQD+CFV  G+       ++A + L    V  + G+ +G      
Sbjct: 173 TRAHAAGLPVWDKRDSQDVCFVPHGR----AAFVSAAVGLTDVPVRDVAGEPVGVTLPFE 228

Query: 261 NYTIGQR-RGLGVAMGEPLFVVYLDKNSSRV 290
             T+GQR R  G +   P +V+   + + RV
Sbjct: 229 LATVGQRLREPGRSGSTPRYVIAKSRTAVRV 259


>gi|171057122|ref|YP_001789471.1| tRNA-specific 2-thiouridylase MnmA [Leptothrix cholodnii SP-6]
 gi|205816874|sp|B1XX60|MNMA_LEPCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170774567|gb|ACB32706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptothrix cholodnii SP-6]
          Length = 380

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 182/386 (47%), Gaps = 32/386 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+VV +SGGVDS+V A LLK+ G++V+ + ++ +     S+    C + QD  DA 
Sbjct: 6   PPKQRIVVGLSGGVDSAVSAWLLKQQGHEVVAIFMKNWEDDDDSE---FCSSRQDFLDAA 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D + +     ++   +++ V   F   Y+AG TP P V CN  +KF   L    +LG
Sbjct: 63  SVADVLGIEIEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R R    +       + + +D  +DQSYFL    Q QL    FP+G++ K
Sbjct: 123 ADRIATGHYARVR---HNPATGLHELLKGLDPLKDQSYFLHRLNQAQLASTLFPVGELPK 179

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256
             VR +A E+GL  A K DS  ICF+ +  + + + R    ++ E G I    G+ +G H
Sbjct: 180 TEVRRIALEIGLPNAKKKDSTGICFIGERPFREFLNRY---LSHEPGPIKDDRGRRIGEH 236

Query: 257 NGIINYTIGQRRGLGV------------AMGEPLFVVYLD--KNSSRVIVGP-RESLEVH 301
            G+  YT+GQR+G+G+               EP FV   D   N+   + G     L+  
Sbjct: 237 VGLSFYTLGQRKGIGIGGLKEKGAPRGGGEHEPWFVARKDLASNTLYAVQGHDHPWLQSQ 296

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVA 360
           R+   + +W+  G        G     + R +     V  +      + + F   +  V 
Sbjct: 297 RLSADDASWI--GTVPQPGQGGLAAKTRYRQADSACAVDALDAAARTLSMSFPAPQWAVT 354

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ V Y  +      LGG +I+ +
Sbjct: 355 PGQSVVLYEGEV----CLGGAVIAAA 376


>gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group]
          Length = 488

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 180/374 (48%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ VC
Sbjct: 78  LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 137

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    + Y +G TP P V CN  +KF   L     LG D 
Sbjct: 138 DKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        DD +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 198 IASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEV 257

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA +M L   D+ DSQ ICF+ + K+ + V+R      G+ LE +     G  LG H 
Sbjct: 258 RRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAE----TGDYLGTHR 313

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   +NW  + 
Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS 372

Query: 315 LFEDAVVDGFKCFVKIRSS---QDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVFYT 369
              +   +  KC  K+R S    D      Q +++GV   V   + + G+A+GQ   FY 
Sbjct: 373 GPTNN--EQLKC--KVRHSPEFHDCTVTQEQTSENGVILVVRLSEDDQGLAAGQFAAFYR 428

Query: 370 SDSNEARVLGGGII 383
            +      LG GII
Sbjct: 429 DNL----CLGSGII 438


>gi|109094553|ref|XP_001111019.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           isoform 2 [Macaca mulatta]
          Length = 422

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/397 (31%), Positives = 189/397 (47%), Gaps = 53/397 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYIKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLER-------------------DQSYFLFATT 181
           +ATGHY R+ L   +  +++ I  RP  L R                   DQ++FL   +
Sbjct: 123 IATGHYARTSLEDEEVFQQKHIK-RPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVS 181

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV------KR 234
           Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +       R
Sbjct: 182 QDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQSYLQPR 241

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
               I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P
Sbjct: 242 PGHFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDGVKGNVFVAP 294

Query: 295 -RESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347
            R+   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG
Sbjct: 295 RRDHPALYRDLLRTSRVHWITEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDG 351

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            V+V   ++   + +GQ  VFY  D      LG G I
Sbjct: 352 TVWVTAVQAVHALTTGQFAVFYKGDE----CLGSGKI 384


>gi|121998186|ref|YP_001002973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
 gi|166234856|sp|A1WWV9|MNMA_HALHL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|121589591|gb|ABM62171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
          Length = 383

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 188/401 (46%), Gaps = 31/401 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  R+VV +SGGVDS+V A  L R G++VIG+ ++ +       +   C A  D+
Sbjct: 1   MTESPK--RIVVGLSGGVDSAVAALRLVRAGHEVIGLFMKNWEDDDTLTQ---CSAEDDI 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  V + + +     ++   +R  V         AG TP P + CNR VKF   L   
Sbjct: 56  AAAVAVAEHLGIPIRRVNFAAHYRREVFEHALQELRAGRTPNPDILCNRHVKFDRFLRHA 115

Query: 134 R-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R Q  AD +ATGHY R+    G  G     + R +D  +DQSYFL    +Q L  +RFPL
Sbjct: 116 REQFEADAVATGHYART----GRAGDGEPALLRGIDPSKDQSYFLAGVPRQALDAVRFPL 171

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           GD  KE+VR  AR   L   D+ DS  ICF+ +  +   ++R        G I+  +G+ 
Sbjct: 172 GDSTKETVRAEARSAALPNFDRPDSTGICFIGERDFTQFMQRYID--PHPGPILTEDGRE 229

Query: 253 LGRHNGIINYTIGQRRGLGVA------MGEPLFVVYLD--KNSSRVIVGP-RESLEVHRI 303
           +GRH G+  YT+GQRRGLG+          P +V   D  +N+  V+ G     L+   +
Sbjct: 230 IGRHCGLAFYTLGQRRGLGIGGDRNRDSSAPWYVAGKDARRNALFVVQGHDHPWLQSAAV 289

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
                +WL          +G +   ++R  Q+P    +   + G V   F++ +     G
Sbjct: 290 STEPFHWLA-----PVPAEGARLHAQVRYRQEPQAGQLSHAEGGRVVFRFDEPQRAATPG 344

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Q  V Y    +  + LGGG+I  +  +D      L     E
Sbjct: 345 QHLVLY----DREQCLGGGVIDTAHPADRSAPPALQTQSTE 381


>gi|241557997|ref|XP_002400368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
 gi|215501775|gb|EEC11269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
          Length = 384

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 174/359 (48%), Gaps = 17/359 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV  MSGGVDSSV A LL++ GYDV GV ++ ++   A      C    D  DA+ VCD
Sbjct: 7   KVVCGMSGGVDSSVAAFLLRKSGYDVTGVFMRNWDPHDADSH---CDLDADETDAKWVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADV 140
           T+ +     D+ + + + V  P    Y  G TP P + CNR +KF        ++ GAD 
Sbjct: 64  TLGIPFMTVDFVKPYWHNVFSPMLQEYQDGLTPNPDIMCNRVIKFGAFHRHAVKRFGADA 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     DG     + + +D  +DQS+FL    Q  L    FPLG+  K  V
Sbjct: 124 VATGHYARIRNL--PDGSVE--LLQGVDPVKDQSFFLSQVGQAALQRTLFPLGEATKGQV 179

Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           + LAR +GL  +ADK +S  +CF+ +  +   V++        G  V +  G+++G H+G
Sbjct: 180 KALARSLGLHRVADKKESMGMCFIGKQDFQSFVEKYVE--PKRGTFVDIETGKVVGSHSG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           +  +T+GQR  LG  +    FV  L   + +++V       +L    +     +W+   L
Sbjct: 238 VHAWTLGQRCRLG-GLRSAYFVARLCPITQQILVASGWDHPALRWREMRTGAPHWIRLPL 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373
                    +C  K +    PVP  V    D G+ V  +  +  ++ GQ  VFY  DS 
Sbjct: 297 VGGGGPPLARCLFKSQHLDPPVPCTVAEGPDGGLAVLLDHHKRAISPGQFAVFYGEDSQ 355


>gi|21312518|ref|NP_082339.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Mus musculus]
 gi|14195274|sp|Q9DAT5|MTU1_MOUSE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|12838169|dbj|BAB24110.1| unnamed protein product [Mus musculus]
 gi|26335739|dbj|BAC31570.1| unnamed protein product [Mus musculus]
 gi|26336146|dbj|BAC31758.1| unnamed protein product [Mus musculus]
 gi|33867793|gb|AAQ55218.1| 5'methylaminomethyl-2-thiouridylate-methyltransferase [Mus
           musculus]
 gi|38512243|gb|AAH61026.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus
           musculus]
 gi|148672470|gb|EDL04417.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus
           musculus]
          Length = 417

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 191/395 (48%), Gaps = 50/395 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGVCAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P ++CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADA 122

Query: 141 LATGHYIRSRL----------YVGDDGK-RRRIMCR-PMDLE------RDQSYFLFATTQ 182
           +ATGHY R+ L              DG  R R   R P+ L       +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +      +      R  
Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             +++E + V      LG H G   YT+GQR  +   + EP +VV  D     V+V PR 
Sbjct: 243 KFVSIEDNTV------LGTHKGWFLYTLGQRAKIS-GLREPWYVVEKDGTKGDVLVAPRV 295

Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V
Sbjct: 296 DHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +V   K+  G+A GQ  VFY  +      LG G I
Sbjct: 353 WVTAVKAVRGLALGQFAVFYKGEE----CLGSGKI 383


>gi|205814822|sp|B2S125|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 354

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 26/369 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + +   ++ +   V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++     I+ +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +R +A ++ L   ++ DSQ ICF+ + KY + +K  + G  L+G+I+    G+ILG HNG
Sbjct: 174 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKY-HLG-ELKGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +      H+  + + NW+    
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWI---- 286

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             +  V+      KIR  +  +   ++   +D + VD E+ + G++ GQ C+FY  D   
Sbjct: 287 --NKPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 -ECLGGAQI 349


>gi|149001781|ref|ZP_01826754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
 gi|147760239|gb|EDK67228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
          Length = 266

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 130/233 (55%), Gaps = 9/233 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   V D
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +
Sbjct: 65  QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR
Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            LA E GL  A K DS  ICF+ +  + + +   N   A  G ++ ++G+ +G
Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMG 231


>gi|308234530|ref|ZP_07665267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae DSM 15829]
          Length = 410

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 24/372 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RV + MSGGVDS++ AALL+  GYDV  + ++ + SR     K  C    D+ DA 
Sbjct: 47  PFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNW-SRDLPGFK--CTWADDLADAE 103

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   + ++  V+D E+ ++  V+    ++Y  G TP P V CN+TVKF    +   + G
Sbjct: 104 RLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEHG 163

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-K 196
           AD +ATGHY R    V  D      + R  D  +DQ+YFL+      L    FP+G +  
Sbjct: 164 ADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIAS 219

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           KE VR +    GL I  K DS  ICF+  G+       ++      GDI+    G +LG 
Sbjct: 220 KEIVRQMCATRGLGIESKPDSDGICFI--GEVGIRTFLLDTLSKRAGDIIEWETGNVLGH 277

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
           H+G   YTIGQR+GL +  G   +VV  D   +RV V        L    + L ++  L 
Sbjct: 278 HDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLLN 337

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
           + + E A+       V++R +     V V+  +D  + + FE +   +A+GQ+ V Y   
Sbjct: 338 ESIDEHALYQ-----VRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQGK 392

Query: 372 SNEARVLGGGII 383
                 +GGGII
Sbjct: 393 I----CVGGGII 400


>gi|209529646|ref|NP_001129348.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Rattus norvegicus]
 gi|149065691|gb|EDM15564.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 417

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 190/395 (48%), Gaps = 50/395 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122

Query: 141 LATGHYIRSRL---YVGDDGKRRRI---------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L    V +    +R                + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +      +      R  
Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             I++E      + ++LG H G   YT+GQR  +   + EP +VV  D     V+V PR 
Sbjct: 243 KFISIE------DNRVLGTHKGWFLYTLGQRAKIS-GLSEPWYVVEKDGTKGDVLVAPRV 295

Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V
Sbjct: 296 DHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +V   K+  G+A GQ  VFY  +      LG G I
Sbjct: 353 WVTAVKAVRGLALGQFAVFYKGEE----CLGSGKI 383


>gi|209364581|ref|NP_001125570.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Pongo abelii]
          Length = 421

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 44/392 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  + Q++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R  
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR 
Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 295

Query: 296 ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVD 351
           +   ++R  LR   ++W+ +      V D   +C  + R     VP  +  N DG V+V 
Sbjct: 296 DHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVT 355

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             ++   +A+GQ  VFY  D      LG G I
Sbjct: 356 AVQAVRALATGQFAVFYKGDE----CLGSGKI 383


>gi|315920804|ref|ZP_07917044.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694679|gb|EFS31514.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 384

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 184/409 (44%), Gaps = 67/409 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 113

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     + +  Y+              D ++DQ++FL+   Q  LC +  P+G
Sbjct: 114 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 163

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQG-KYF--DVVKRINAGIALE------- 242
           D+ K   R  A E G   +A K DS  +CF     + F  + + + +A +A E       
Sbjct: 164 DITKVEARVWAAEHGFRKVATKKDSIGVCFCPMDYRTFLRNWLAQNSAALAGEEQMMEED 223

Query: 243 -----------------------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
                                  G  V   G  +  H G   YTIGQRRGLG+ +  P+F
Sbjct: 224 QVLVEDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 283

Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338
           V  ++   + V++    +LE   ++L++ N +     ++  +      VKIR   Q+   
Sbjct: 284 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 339

Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                 +  ++V   +    +A GQA  FY     +  +LGGGII  ++
Sbjct: 340 TITITPNHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 384


>gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH]
 gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia hermsii DAH]
          Length = 357

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 26/369 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 4   MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + +   ++ +   V+         G TP P + CN+ +KF        +   D
Sbjct: 63  CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++     I+ +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 122 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +R +A ++ L   ++ DSQ ICF+ + KY + +K  + G  L+G+I+    G+ILG HNG
Sbjct: 177 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKY-HLG-ELKGNIIEQETGKILGTHNG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +      H+  + + NW+    
Sbjct: 235 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWI---- 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             +  V+      KIR  +  +   ++   +D + VD E+ + G++ GQ C+FY  D   
Sbjct: 290 --NKPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 344

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 345 -ECLGGAQI 352


>gi|328944127|ref|ZP_08241592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae DSM 15829]
 gi|327492096|gb|EGF23870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae DSM 15829]
          Length = 430

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 24/372 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RV + MSGGVDS++ AALL+  GYDV  + ++ + SR     K  C    D+ DA 
Sbjct: 67  PFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNW-SRDLPGFK--CTWADDLADAE 123

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   + ++  V+D E+ ++  V+    ++Y  G TP P V CN+TVKF    +   + G
Sbjct: 124 RLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEHG 183

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-K 196
           AD +ATGHY R    V  D      + R  D  +DQ+YFL+      L    FP+G +  
Sbjct: 184 ADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIAS 239

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           KE VR +    GL I  K DS  ICF+  G+       ++      GDI+    G +LG 
Sbjct: 240 KEIVRQMCATRGLGIESKPDSDGICFI--GEVGIRTFLLDTLSKRAGDIIEWETGNVLGH 297

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
           H+G   YTIGQR+GL +  G   +VV  D   +RV V        L    + L ++  L 
Sbjct: 298 HDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLLN 357

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
           + + E A+       V++R +     V V+  +D  + + FE +   +A+GQ+ V Y   
Sbjct: 358 ESIDEHALYQ-----VRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQGK 412

Query: 372 SNEARVLGGGII 383
                 +GGGII
Sbjct: 413 I----CVGGGII 420


>gi|260172511|ref|ZP_05758923.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
          Length = 385

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 184/409 (44%), Gaps = 67/409 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     + +  Y+              D ++DQ++FL+   Q  LC +  P+G
Sbjct: 115 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 164

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQG-KYF--DVVKRINAGIALE------- 242
           D+ K   R  A E G   +A K DS  +CF     + F  + + + +A +A E       
Sbjct: 165 DITKVEARVWAAEHGFRKVATKKDSIGVCFCPMDYRTFLRNWLAQNSAALAGEEQMMEED 224

Query: 243 -----------------------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
                                  G  V   G  +  H G   YTIGQRRGLG+ +  P+F
Sbjct: 225 QVLVEDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 284

Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338
           V  ++   + V++    +LE   ++L++ N +     ++  +      VKIR   Q+   
Sbjct: 285 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 340

Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                 +  ++V   +    +A GQA  FY     +  +LGGGII  ++
Sbjct: 341 TITITPNHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 385


>gi|327273596|ref|XP_003221566.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Anolis carolinensis]
          Length = 417

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 192/394 (48%), Gaps = 48/394 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV A+SGGVDS+V A LL+R GYDV GV ++ ++    +  KG C A +D  DA RVC+
Sbjct: 6   RVVCALSGGVDSAVAAVLLRRRGYDVTGVFMKNWD---IADEKGVCSADKDCDDAYRVCE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +N+  +   Y + + N V     + Y  G TP P + CN+ +KF+        +LGAD 
Sbjct: 63  ILNIPFHQVSYVKEYWNDVFSYLLNEYELGRTPNPDIICNKYIKFNYFFHYAVDKLGADA 122

Query: 141 LATGHYIRSRLYVGDDGK-RRRIMCRPMDLER-------------------DQSYFLFAT 180
           +ATGHY R+ L  GD+   +++ + RP  L R                   DQ++FL   
Sbjct: 123 IATGHYARTSL--GDNEVFQQKYIQRPKGLFRNRFEIRNTVKLLQAADQFKDQTFFLSQI 180

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KR 234
           +Q+ L    FPLGD+ K+ V+ +A E  L  +  + +S  ICF+ +  +   +      R
Sbjct: 181 SQEALRRTIFPLGDLTKDFVKKIAAEHHLHHVLQRKESMGICFIGERNFEKFILEYLEPR 240

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
               +++E D      +++G H G   YT+GQR  +   + +  FVV  +  S  V V P
Sbjct: 241 PGNFVSIEDD------KVIGSHKGWFLYTLGQRARIS-GLKDAWFVVDKNTASGDVFVAP 293

Query: 295 -RESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VY 349
             +   ++R  LR   ++W+ +    + + D   +C  + +     VP  +  N DG V+
Sbjct: 294 STDHPALYRSLLRTNRVHWIAEEPPAELIRDKMMECNFRFQHQMALVPCTLTLNQDGTVW 353

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V        +  GQ  VFY  D    + LG G I
Sbjct: 354 VTLVTPLRALTPGQFAVFYKGD----KCLGSGKI 383


>gi|319900441|ref|YP_004160169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319415472|gb|ADV42583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 353

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 174/355 (49%), Gaps = 27/355 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ MSGG DSSV A  L+  GY+V GVT + Y +   +         + + DAR +   
Sbjct: 7   VLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEADGGT---------EYLEDARALAAR 57

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H  +D  E FR  VI  F   Y AG TP+PC  CN  +K++ L  +  + G   ++
Sbjct: 58  LGIGHITYDAREAFRERVIRYFIDEYLAGRTPVPCTVCNNELKWALLAKIADEKGIYWVS 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R  L  G     +  +    D ++DQS+FL+   Q  L  +  P+GD+ K   R 
Sbjct: 118 TGHYVRKVLQEG-----KYYIAPAADRDKDQSFFLWGLKQDILRRMLLPMGDIIKSEARA 172

Query: 203 LAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGRHNG 258
            A   G   +A K DS  +CF      +    +  AG+     +G  V   G  LG H G
Sbjct: 173 YAAARGFRQVATKKDSIGVCFCPLD--YRSFLKCEAGVRKLPDKGKFVDEKGNFLGWHEG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ + + +FV  +    + VI+ P  SL    ++L E N     L E 
Sbjct: 231 YPFYTIGQRRGLGLQLNKAVFVKEISVEKNEVILAPLASLYKREMWLEEWN-----LAEY 285

Query: 319 A-VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           + V+D  +  VKIR  +      V    DG ++V   +    VA+GQA  FYT+D
Sbjct: 286 SRVLDAEEVIVKIRYRKQANRCKVSLTADGLLHVCLAEPLEAVAAGQAAAFYTAD 340


>gi|307069664|ref|YP_003878141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Zinderia insecticola CARI]
 gi|306482924|gb|ADM89795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Zinderia insecticola CARI]
          Length = 365

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 158/284 (55%), Gaps = 19/284 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++AMSGG+DSS+ A LLK+ GY VIG+ ++ ++    S    +C   ++  DA ++ +
Sbjct: 4   KIILAMSGGIDSSITAWLLKKKGYKVIGIFMKNWHFNNNSIFDSNC---KEFLDALKISE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            + +   + D+ +++R  +   F   Y     P P + CN  +KF   L+   ++    +
Sbjct: 61  YLKIKIKILDFSKKYRKFIFNKFLKEYKKNNIPNPDILCNSIIKFKFFLNYCIKKFKIKL 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R + Y     K +  + + +D ++DQSYFL++  ++ + ++ FPLGD+ K+ +
Sbjct: 121 IATGHYLRIKKY-----KNKFFLLKALDKKKDQSYFLYSLNKKNISNIIFPLGDLNKKDI 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           R +A+++     +K DS  ICF+ + K   ++K ++  I    G I  LN + + +H GI
Sbjct: 176 RRIAKKIKFFNYNKKDSIGICFIGKNK---IIKFLSYYIIFNPGYIKLLNEKKINKHLGI 232

Query: 260 INYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRES 297
             Y IGQR+GL +         +P +V++ D  ++ + +  + +
Sbjct: 233 NFYNIGQRKGLKIGGIKNNKKNKPWYVIFKDIKNNIIYISNKNN 276


>gi|190348444|gb|EDK40897.2| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 412

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 39/382 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  +VVAMS GVDSSV AA+  +   +V G+ +       A+  + + C   D  D +R+
Sbjct: 47  DDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYM-------ANWSQTAKCTEADWKDVQRI 99

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
           C+ I +     ++E  + + V  P  S+Y  G TP P V CN+ VKF  ++  +   LG 
Sbjct: 100 CEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLGAMLGK 159

Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D    L TGHY R    + ++  +R  + R +   +DQSY+L       L ++  P+G M
Sbjct: 160 DRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLMPIGHM 216

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG-----KYFDVVKRINAGIALEGDIVHLNG 250
            K  VR +A+++ L +A K DSQ +CFV Q      K+ D     N      G+IV  +G
Sbjct: 217 TKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIEPNP-----GNIVTEDG 271

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEVHR 302
           +I G+H G+ + TIGQ+ G+ +  G P      FV    + ++ +++   G   SL   +
Sbjct: 272 KIWGQHQGLWHATIGQKSGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFNSK 331

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVAS 361
           +      W+ +     A        ++ RS Q P+ V  +    D + ++ E+    +A 
Sbjct: 332 VLAENWTWIDEKNVAKAA--DMPYHIQYRSLQFPLKVKAIVPKADSLEIELEEKARAMAP 389

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ  V Y     +++VLG G+I
Sbjct: 390 GQNLVLY----KDSQVLGSGVI 407


>gi|146414139|ref|XP_001483040.1| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 412

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 39/382 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  +VVAMS GVDSSV AA+  +   +V G+ +       A+  + + C   D  D +R+
Sbjct: 47  DDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYM-------ANWSQTAKCTEADWKDVQRI 99

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
           C+ I +     ++E  + + V  P  S+Y  G TP P V CN+ VKF  ++  +   LG 
Sbjct: 100 CEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLGAMLGK 159

Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D    L TGHY R    + ++  +R  + R +   +DQSY+L       L ++  P+G M
Sbjct: 160 DRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLMPIGHM 216

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG-----KYFDVVKRINAGIALEGDIVHLNG 250
            K  VR +A+++ L +A K DSQ +CFV Q      K+ D     N      G+IV  +G
Sbjct: 217 TKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIEPNP-----GNIVTEDG 271

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEVHR 302
           +I G+H G+ + TIGQ+ G+ +  G P      FV    + ++ +++   G   SL   +
Sbjct: 272 KIWGQHQGLWHATIGQKLGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFNSK 331

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVAS 361
           +      W+ +     A        ++ RS Q P+ V  +    D + ++ E+    +A 
Sbjct: 332 VLAENWTWIDEKNVAKAA--DMPYHIQYRSLQFPLKVKAIVPKADSLEIELEEKARAMAP 389

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ  V Y     +++VLG G+I
Sbjct: 390 GQNLVLY----KDSQVLGSGVI 407


>gi|148377683|ref|YP_001256559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma agalactiae PG2]
 gi|205816906|sp|A5IYK6|MNMA_MYCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148291729|emb|CAL59115.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma agalactiae PG2]
          Length = 374

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 178/376 (47%), Gaps = 34/376 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S   +   G+       C   QD  
Sbjct: 6   KVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQDYQ 65

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA  V + + +  +  D+   + N V   F S Y AG TP P + CN+ +KF        
Sbjct: 66  DALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDYAF 125

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +A GHY +       DG+    + R  D  +DQ+YFL   + +QL  +  PL 
Sbjct: 126 NNLGADYIAMGHYAKVT-----DGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMPLA 176

Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NG 250
           +   KE VR +A+E  L  A K DS  ICF+ + K+    K +   I ++ GDIV +   
Sbjct: 177 EFSSKEEVRKIAQEQDLITASKKDSTGICFIGERKF---TKFLQNYIPMQPGDIVDIRTN 233

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           + LG+H G   YTIGQR+GL +    EP +V   D   + + V P   L     YL    
Sbjct: 234 KKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLS----YLTSDA 289

Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
            L  GL       D      K R  Q  +PV ++   ++ + V +      V  GQ  V 
Sbjct: 290 LLATGLTLNHDDFDHNNLSAKFRYRQQDIPVTIELLPNNTIKVYYPSESQAVTPGQQVVL 349

Query: 368 YTSDSNEARVLGGGII 383
           Y       + LGG +I
Sbjct: 350 YEGQ----KCLGGAVI 361


>gi|298480486|ref|ZP_06998683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|298273307|gb|EFI14871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 379

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 73/392 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y      +  GS    + + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFY------ELNGST---EYLEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     +    Y+              D ++DQ++FL+   Q  L  +  P+G
Sbjct: 115 FYIATGHYAQNIQLNETFYI----------TYAADSDKDQTFFLWGLKQDILNRMLLPMG 164

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICF-------------VQQGK------------ 227
           D+ K   R  A E G   +A K DS  +CF             V+ G+            
Sbjct: 165 DITKAEARAWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKDWLVRNGQMSVSNSEASINN 224

Query: 228 ----------YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
                     + D ++R        G  V   G  +  H G   YTIGQRRGLG+ +  P
Sbjct: 225 SQTSGSDKQTWSDRIRR--------GRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRP 276

Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDP 336
           +FV  +D   + V++    SLE   ++L++ N +     ++  +D     VKIR   Q+ 
Sbjct: 277 VFVKEIDPEKNEVMLASLSSLEKTEMWLKDWNLVN----QERTLDRSDIIVKIRYRKQEN 332

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
                  +D  ++V   +    +A GQA  FY
Sbjct: 333 HGTITVTSDHLLHVQLHEPLTAIAPGQAAAFY 364


>gi|85057877|ref|YP_456793.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster
           yellows witches'-broom phytoplasma AYWB]
 gi|123518066|sp|Q2NIM9|MNMA_AYWBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84789982|gb|ABC65714.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster
           yellows witches'-broom phytoplasma AYWB]
          Length = 378

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 185/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVYD 75
           +VVV +SGGVDS+V A LLK+ GY V  V ++ ++S      +G+      C    D  D
Sbjct: 3   KVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICPQELDYKD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTR 134
           A +V + + +  +  D+ E +   V + F  ++    TP P + CN  +KF   +  VT 
Sbjct: 63  ALKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYVTT 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L    +A GHY         + K    +   +D  +DQ+YFL     +QL ++ FPLG+
Sbjct: 123 KLAPRYIAMGHYANIIYETFSEQKLFPQLACAVDQNKDQTYFLSQLATKQLQNILFPLGN 182

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K+ VR +A E  L  A K DS  ICF+ +  +F  +   N   A +GDI  L+G  L 
Sbjct: 183 LTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLS--NYLPAQKGDIKTLDGTFLA 240

Query: 255 RHNGIINYTIGQRRGLGV---AMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREI 308
            H G++ YTIGQR+ LG+   +  +P FVV  +L  N+  V  G     L   +  + +I
Sbjct: 241 HHKGVMYYTIGQRKNLGLGDFSSQKPWFVVGKHLQTNTLYVEQGNTHPYLYSDKALISDI 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            W G                K+R    +QD +  ++ +N   +Y  + ++   V  GQ C
Sbjct: 301 VWRGKK-------TNLHLQAKMRYRQPNQDVILTWIDQNTLEIY--YPQTIKAVTPGQIC 351

Query: 366 VFYTSDSNEARVLGGGII-----SGSKR 388
            FY    N     G G+I      G+KR
Sbjct: 352 AFY----NNNICCGAGVIKEVYFQGTKR 375


>gi|13357963|ref|NP_078237.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762343|ref|YP_001752485.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|171920416|ref|ZP_02931735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508565|ref|ZP_02958082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701789|ref|ZP_02971467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|14195293|sp|Q9PQ88|MNMA_UREPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040514|sp|B1AJ41|MNMA_UREP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|11277497|pir||H82896 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase UU402
           [imported] - Ureaplasma urealyticum
 gi|6899388|gb|AAF30812.1|AE002137_11 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827920|gb|ACA33182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902858|gb|EDT49147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676011|gb|EDT87916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701067|gb|EDU19349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 385

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 189/382 (49%), Gaps = 43/382 (11%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLY-------NSRKASKRKGSCCAGQDVYDARR 78
            +SGGVDSSV A LLK++GY+VIG+ +  +       N+ + +K    C +  D  DA+ 
Sbjct: 12  GLSGGVDSSVSALLLKQEGYEVIGLFMSNWDTIANFENNHEFNKTHQGCESELDYQDAQA 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLG 137
           V   I +  Y  ++ + + + V   F S Y    TP P + CN+ +KF   L+  + +L 
Sbjct: 72  VAQKIGIPLYRVEFIKEYWDNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAKNELQ 131

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +A GHY R +       +    + + +D  +DQ+YFL    Q QL ++ FP+G + K
Sbjct: 132 ADYIAMGHYARVK-----HDRNSSFLLKAIDTNKDQTYFLCNLNQNQLQNVLFPIGHLTK 186

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG------- 250
             VR +A++ GL  A+K DS  ICF+ +          N    L+  I +  G       
Sbjct: 187 LQVRAIAKKHGLITANKKDSTGICFIGER---------NFKTFLQNYIPNQPGQIINIVN 237

Query: 251 -QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            QI+G H G + YTIGQR+GL +  M E +FV   D +   + V P  S E  + YL   
Sbjct: 238 NQIIGHHIGTMYYTIGQRKGLNLGGMNERMFVCDKDIDKKIIYVAP-SSFE--KQYLIST 294

Query: 309 NWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPV--FVQ-RNDDGVYVDFEKSEVGVASGQA 364
             L + + F +         V+ R  QD + V  F+  +N   V +++E S   +  GQ 
Sbjct: 295 QALIENINFIEPYNPQIPIMVRFRHRQDLIIVNDFLPIKNTKNVLINYE-SARAITPGQY 353

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
            VFY +D      +GGGI+S +
Sbjct: 354 AVFYQND----HCIGGGIVSKT 371


>gi|291320347|ref|YP_003515609.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma agalactiae]
 gi|290752680|emb|CBH40653.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma agalactiae]
          Length = 374

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 179/376 (47%), Gaps = 34/376 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ MSGGVDSSV A LL + G++V G+ ++ ++S   +   G+       C   QD  
Sbjct: 6   KVILGMSGGVDSSVCAYLLLKQGFEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQDYQ 65

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA +V + + +  +  D+   + N V   F S Y  G TP P + CN+ +KF        
Sbjct: 66  DALKVANKLGIKLHRVDFVNEYWNDVFKTFISEYEHGRTPNPDILCNKYIKFKAFSDYAF 125

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +A GHY R       DG+    + R  DL +DQ+YFL   + +QL  +  PL 
Sbjct: 126 NNLGADYIAMGHYARVT-----DGR----LYRAKDLNKDQTYFLAQLSHEQLEKVLMPLA 176

Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NG 250
           D   KE VR +A E  L  A K DS  ICF+ + K+    K +   I ++ GDIV +   
Sbjct: 177 DFTSKEEVRKIAEEQDLITASKKDSTGICFIGERKF---TKFLQNYIPMQPGDIVDIKTN 233

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           + +G+H G   YTIGQR+GL +    EP +V   +   + + V P   L     YL    
Sbjct: 234 KKIGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHNVKENILYVSPSSDLS----YLTSDA 289

Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
            L  GL       D      K R  Q  +PV ++   ++ + V +      V  GQ  V 
Sbjct: 290 LLATGLTLNHDDFDLNNLSAKFRYRQKDIPVTIELLPNNAIKVYYPSEAQAVTPGQQVVL 349

Query: 368 YTSDSNEARVLGGGII 383
           Y  +    + LGG +I
Sbjct: 350 YDGE----KCLGGAVI 361


>gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group]
 gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group]
 gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 488

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 178/374 (47%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ VC
Sbjct: 78  LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 137

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    + Y +G TP P V CN  +KF   L     LG D 
Sbjct: 138 DKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        DD +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 198 IASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEV 257

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA +M L   D+ DSQ ICF+ + K+ + V+R      G+ LE +     G  LG H 
Sbjct: 258 RRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAE----TGDYLGTHR 313

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL +  G P +VV     ++ V V     SL+  R   R   +NW  + 
Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS 372

Query: 315 LFEDAVVDGFKCFVKIRSS---QDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVFYT 369
              +   +  KC  K+R S    D      Q ++ GV   V   + + G+A+GQ   FY 
Sbjct: 373 GPTNN--EQLKC--KVRHSPEFHDCTVTQEQTSEHGVILVVRLSEDDQGLAAGQFAAFYR 428

Query: 370 SDSNEARVLGGGII 383
            +      LG GII
Sbjct: 429 DNL----CLGSGII 438


>gi|298387127|ref|ZP_06996681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298260277|gb|EFI03147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 369

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 46/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V GVT + Y    ++         + + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDST---------EYLEDARH 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFRKQIIEYFVREYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R ++ V D       +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 114 FYIATGHYVR-KVKVDDTC----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 168

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKR----------------INAGIAL 241
             R  A E G   +A K DS  +CF     Y   +K+                ++AG   
Sbjct: 169 EARVFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKKWLVSNCQPQVSVGQPQVSAGQTW 227

Query: 242 EGDI-----VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
             ++     V   G  +  H G   YT+GQRRGLG+ +   +FV  +    + V++   +
Sbjct: 228 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 287

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKS 355
           +LE   + L++ N +      + ++      VKIR   Q+         D+ ++V   + 
Sbjct: 288 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTPDNFLHVQLHEP 343

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +ASGQA  FY     +  +LGGGII
Sbjct: 344 LTAIASGQAAAFY----KDGLLLGGGII 367


>gi|29348763|ref|NP_812266.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81443497|sp|Q8A2F1|MNMA2_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|29340669|gb|AAO78460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 370

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 46/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V GVT + Y    ++         + + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDST---------EYLEDARH 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R ++ V D       +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 115 FYIATGHYVR-KVKVDDTC----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK----------------RINAGIAL 241
             R  A E G   +A K DS  +CF     Y   +K                +++AG   
Sbjct: 170 EARAFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKMWLVSNCQPQVSVGQPQVSAGQTW 228

Query: 242 EGDI-----VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
             ++     V   G  +  H G   YT+GQRRGLG+ +   +FV  +    + V++   +
Sbjct: 229 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 288

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKS 355
           +LE   + L++ N +      + ++      VKIR   Q+         D+ ++V   + 
Sbjct: 289 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTLDNFLHVQLHEP 344

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +ASGQA  FY     +  +LGGGII
Sbjct: 345 LTAIASGQAAAFY----KDGLLLGGGII 368


>gi|294155486|ref|YP_003559870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma crocodyli MP145]
 gi|291599923|gb|ADE19419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma crocodyli MP145]
          Length = 372

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 182/375 (48%), Gaps = 31/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ MSGGVDSSV A LLK  GY+VIG+ ++ ++S   +   G+       C   QD  
Sbjct: 5   KVVIGMSGGVDSSVAAYLLKEQGYEVIGLFMRNWDSILNNDILGNEKINQDICPQEQDYQ 64

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA  V   +N+  +  D+ + +   V   F   Y  G TP P + CN+ +KF+   +   
Sbjct: 65  DALSVAQKLNIPLHRVDFVKEYWTNVFNNFIEEYKKGRTPNPDILCNKYIKFNYFANYAF 124

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD +A GHY +      ++GK    + R  D  +DQ+YFL   T++QL  +  PL 
Sbjct: 125 DKLGADYIAMGHYAKV-----ENGK----LYRAKDENKDQTYFLAQVTEEQLKKVIMPLY 175

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           D++K  +R LA ++ L  A+K DS  ICF+ +  +   ++  N   A EGDIV +   + 
Sbjct: 176 DLQKSQIRKLAADLNLSTANKKDSTGICFIGERNFTSFLQ--NYIPAQEGDIVDITTNKK 233

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           + +H G   YTIGQR+GL +    EP +V   +   + + V P      H  YL     +
Sbjct: 234 VAKHVGCFYYTIGQRKGLNLGGFVEPYYVCGHNVKENILYVAPAS----HPEYLDSNELI 289

Query: 312 GDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
              L       +     VK R  Q  +   ++  D+  + + + +    V  GQ  V Y 
Sbjct: 290 ASNLTLNHKEFNNDNITVKFRYRQKDIKANIEILDNNFIKIYYPEKSQAVTPGQQVVLYD 349

Query: 370 SDSNEARVLGGGIIS 384
            +    + LGG +I 
Sbjct: 350 GE----KCLGGAVIE 360


>gi|253568894|ref|ZP_04846304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6]
 gi|251840913|gb|EES68994.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6]
          Length = 369

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 46/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V GVT + Y    ++         + + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDST---------EYLEDARH 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R ++ V D       +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 114 FYIATGHYVR-KVKVDDTC----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 168

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK----------------RINAGIAL 241
             R  A E G   +A K DS  +CF     Y   +K                +++AG   
Sbjct: 169 EARAFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKMWLVSNCQPQVSVGQPQVSAGQTW 227

Query: 242 EGDI-----VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
             ++     V   G  +  H G   YT+GQRRGLG+ +   +FV  +    + V++   +
Sbjct: 228 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 287

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKS 355
           +LE   + L++ N +      + ++      VKIR   Q+         D+ ++V   + 
Sbjct: 288 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTLDNFLHVQLHEP 343

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +ASGQA  FY     +  +LGGGII
Sbjct: 344 LTAIASGQAAAFY----KDGLLLGGGII 367


>gi|39938611|ref|NP_950377.1| tRNA-specific 2-thiouridylase MnmA [Onion yellows phytoplasma OY-M]
 gi|81565131|sp|Q6YR90|MNMA_ONYPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|39721720|dbj|BAD04210.1| tRNA(5-methylaminomethyl-2-thiouridylate) [Onion yellows
           phytoplasma OY-M]
          Length = 378

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 186/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVYD 75
           +VVV +SGGVDS+V A LLK+ GY V  V ++ ++S      +G+      C    D  D
Sbjct: 3   KVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICSQELDYKD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTR 134
           + +V + + +  +  D+ E +   V + F  ++    TP P + CN  +KF   +   T 
Sbjct: 63  SLKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYATT 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L    +A GHY         D K    +   +D  +DQ+YFL   T +QL ++ FPLG+
Sbjct: 123 KLAPQYIAMGHYANIIYETSSDQKLVPRLACAVDQNKDQTYFLSQLTTKQLQNILFPLGN 182

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K+ VR +A E  L  A K DS  ICF+ +  +F  +   N   A +GDI  L+G  L 
Sbjct: 183 LTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLS--NYLPAQKGDIKTLDGTFLA 240

Query: 255 RHNGIINYTIGQRRGLG---VAMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREI 308
            H G++ YTIGQR+ LG   V   +P FVV  +L  N+  V  G     L   +  + +I
Sbjct: 241 HHKGVMYYTIGQRKNLGLGDVPSQKPWFVVGKHLPTNTLYVEQGSTHPYLYSDKALIGDI 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            W G                K+R    +QD +  ++ +N+  + + + ++   V  GQ C
Sbjct: 301 VWRGKK-------TNLHLQAKMRYRQPNQDVILTWLDQNN--LEIHYPQTIKAVTPGQIC 351

Query: 366 VFYTSDSNEARVLGGGII-----SGSKR 388
            FY  D N     G G+I      G+KR
Sbjct: 352 AFY--DKNIC--CGAGVIKEVYFQGTKR 375


>gi|205829196|sp|B1WC37|MTU1_RAT RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|171846652|gb|AAI61991.1| Trmu protein [Rattus norvegicus]
          Length = 441

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 196/413 (47%), Gaps = 62/413 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122

Query: 141 LATGHYIRSRL---YVGDDGKRRRI---------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L    V +    +R                + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFV--QQGKYFDV---VKRIN 236
             L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+  +  ++F +   V  ++
Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQVSVSDVS 242

Query: 237 AGIALEGDIVHL------------------NGQILGRHNGIINYTIGQRRGLGVAMGEPL 278
            G+   G  V +                  + ++LG H G   YT+GQR  +   + EP 
Sbjct: 243 GGLLWAGAPVVMKPVFQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKIS-GLSEPW 301

Query: 279 FVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIR 331
           +VV  D     V+V PR +   ++R  LR   ++W+ +     L  D +++   C  + R
Sbjct: 302 YVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFR 358

Query: 332 SSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                VP  +  N DG V+V   K+  G+A GQ  VFY  +      LG G I
Sbjct: 359 HQMALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGEE----CLGSGKI 407


>gi|224537479|ref|ZP_03678018.1| hypothetical protein BACCELL_02358 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520917|gb|EEF90022.1| hypothetical protein BACCELL_02358 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 350

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 156/313 (49%), Gaps = 22/313 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++ MSGG DSSV A  L+  GY+V GVT + Y    A+         + + DAR +  
Sbjct: 6   RVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGAT---------EYLDDARALAS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H  +D  E FR+ +I  F   Y AG TP+PC  CN  +K++ L  +  + G   +
Sbjct: 57  RLGIEHITYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWTLLAKIADEKGIYWI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK-ESV 200
           +TGHY+R  L  G     +  M    D ++DQ++FL+   Q  +  +  P+GD+ K E+ 
Sbjct: 117 STGHYVRKILQGG-----KYYMAPAADRDKDQTFFLWGLKQDIIQRMLLPMGDITKVEAR 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258
              A      +A K DS  +CF  +  Y   ++R      L  +G  +  NG  LG H G
Sbjct: 172 AFAAARGFHGVATKKDSIGVCFCPR-DYRSFLRREAGAQKLPNKGKFIDENGCFLGWHEG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ M   +FV  +    + V++ P  SL    ++L+  N +     E 
Sbjct: 231 YPFYTIGQRRGLGIQMNRAVFVKEISVERNEVVLAPLASLYKQEMWLKGWNLVE----ES 286

Query: 319 AVVDGFKCFVKIR 331
            V+   +  VKIR
Sbjct: 287 RVLQAKEVIVKIR 299


>gi|169334729|ref|ZP_02861922.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257467|gb|EDS71433.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM
           17244]
          Length = 354

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 187/366 (51%), Gaps = 27/366 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDS+V A LLK+ GYDVIG+ ++ ++    +   G C A +D  DAR VC  +N+ 
Sbjct: 1   MSGGVDSTVSAYLLKKQGYDVIGLFMKNWDE---TDENGECSAEEDYDDARAVCLKLNIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGH 145
            Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L      L AD +ATGH
Sbjct: 58  CYTVNFTKEYWDNVFTYFLDEYKKGRTPNPDVLCNKEIKFKCFLDYAINVLNADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y  +++    +G R   + +  D  +DQ+YFL    ++QL  + FPL D++K  VR++A 
Sbjct: 118 Y--AKVEHTKEGTR---LLKAKDQHKDQTYFLSLLKEKQLERVIFPLADVEKGEVREIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTI 264
             G   A K DS  ICF+ +  +   ++  N      GD++ ++ G+  G H G++ YT+
Sbjct: 173 REGFRNAKKKDSTGICFIGERNFTQFLQ--NYLPNQPGDMIDMDTGEKKGEHIGLMYYTL 230

Query: 265 GQRR---GLGVAMGEPLFVVYLDKNSS--RVIVGPRE-SLEVHRIYLREINWLGDGLFED 318
           GQRR     G   GE  +V   D N++   ++ G +   L  +     ++N +  G +  
Sbjct: 231 GQRRGLGVGGCGSGERWYVADKDLNNNILYIVQGDKNPKLYKNGFIATDVNMIS-GHYPS 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377
              D F+C ++ R  Q      V+  D+    V F++ + GV  GQ  VFY  +      
Sbjct: 290 ---DKFECEMRFRHLQPLKKATVEVIDESTARVIFDEEQSGVTPGQIAVFYDGEV----C 342

Query: 378 LGGGII 383
           LGGG I
Sbjct: 343 LGGGTI 348


>gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135]
 gi|254811445|sp|A1R0A7|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia turicatae 91E135]
          Length = 354

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 184/374 (49%), Gaps = 36/374 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV   ++ + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MQIAVLLSGGVDSSVALYIMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDINYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + +   ++ +   V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++     I+ +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNDHYILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +R +A+++ L   ++ DSQ ICF+ + KY + +K  + G  L+G+I+    G+ILG HNG
Sbjct: 174 IRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKY-HLG-ELKGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--------KNSSRVIVGPRESLEVHRIYLREINW 310
              +TIGQR+G+ ++ G P FV   D         NS   +   ++   VH+      NW
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHK-----TNW 285

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +   L    +        KIR  +  +   ++   +D + VD E+ + G++ GQ C+FY 
Sbjct: 286 INKPLNNGDLS------AKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQ 339

Query: 370 SDSNEARVLGGGII 383
            D      LGG  I
Sbjct: 340 ED----ECLGGAKI 349


>gi|301107608|ref|XP_002902886.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora
           infestans T30-4]
 gi|262098004|gb|EEY56056.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora
           infestans T30-4]
          Length = 416

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 181/399 (45%), Gaps = 46/399 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLKR GY V GV ++ ++     + + +C    +  D ++VC+ + + 
Sbjct: 1   MSGGVDSSVAALLLKRQGYHVTGVYMKNWDPSD-EEGESACPVDSEYVDVQKVCEQLGIE 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
             + +  + + N V  P  + Y  G TP P + CNR +KF       +Q+GAD +ATGHY
Sbjct: 60  AQMVNLVQSYWNQVFAPCLAGYEEGLTPNPDILCNREIKFKAFTEFAKQIGADCVATGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
             + L   + G     +C   D  +DQSYFL +   +   ++ FPLG M+K  VR +A  
Sbjct: 120 --AALRPAEKGGPPN-LCAAEDESKDQSYFLSSVDGKAFANVLFPLGGMRKTEVRQIAES 176

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL  A K DS  ICF+ +  + D + +       +G    + G+ +  H+G   YT+GQ
Sbjct: 177 EGLCTATKKDSVGICFIGKRNFADFIHQYIQ--RQDGYFYTVGGEKMHPHHGFTAYTVGQ 234

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVV 321
              L   M    FVV   K    VIV      P    +       + NW+   L  +   
Sbjct: 235 GARL-QGMSAKWFVVGKHKFDHSVIVAEGTRNPALFSDALFASAEQFNWMAGDLPPELRD 293

Query: 322 DG-FKCFVKIRSSQD----PVPVFVQR------------------NDDGVY--------V 350
            G  +CF ++R  QD     + +   R                  N++GV         V
Sbjct: 294 TGRMRCFYRVRYRQDLDKCTISLVSNREARASASKLHDWQPELVANEEGVENGEKIYLRV 353

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
           DF+  + GV   QA V Y SD       GGG I+ + ++
Sbjct: 354 DFDHPQRGVTPEQALVLYRSD---GLCYGGGPIAAAGQT 389


>gi|320580644|gb|EFW94866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Pichia angusta DL-1]
          Length = 399

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 193/384 (50%), Gaps = 32/384 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVY 74
           NP D ++VV+MS GVDSSV A +  +   +V G+ +  ++      R G   C    D  
Sbjct: 29  NPND-QIVVSMSSGVDSSVAALMYAKQYKNVKGIFMANWS---PDSRGGVSKCTVESDWE 84

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           + + +CD I +     ++E+ + + V  P    Y  G TP P V CN+ VKF  ++  ++
Sbjct: 85  EVQTICDQIGIPCERVNFEKEYWSDVFEPMLEMYRKGLTPNPDVGCNKYVKFGKMIEHLS 144

Query: 134 RQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +   D   L TGHY R   +          + R   L +DQSY+L    +  L  +  P
Sbjct: 145 TKFSRDNWWLVTGHYARIMKHRATGESH---LLRAGFLPKDQSYYLSQMPESVLSKILMP 201

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNG 250
           +G   K  VR+LA+  GL   DK DSQ +CFV Q G + D +          GDIV  +G
Sbjct: 202 IGHYTKPEVRELAQRYGLVSKDKRDSQGLCFVSQHGNFKDFLDEFLP--PNPGDIVTADG 259

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGP---RESLEVHR 302
           ++ GRHNG+ + TIGQR G+ +  G+P      ++   + + +++I+     R + E  R
Sbjct: 260 RVWGRHNGLWHGTIGQRSGISLPQGDPEMKGVWYISGKNYDKNQLIISKKTDRAAFEKDR 319

Query: 303 IYLREINWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVA 360
           + + +  W+   L F D  +D  +  +++RS + P  +  V   ++  ++  EK + GVA
Sbjct: 320 LKVADWQWINSSLDFGD--LDPAELTIQVRSLESPRALRAVVAGNEPEFLLQEKID-GVA 376

Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384
            GQ  V Y ++    RVLGGGII+
Sbjct: 377 PGQNLVLYKNE----RVLGGGIIA 396


>gi|71897067|ref|NP_001026522.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Gallus gallus]
 gi|75571355|sp|Q5ZKW0|MTU1_CHICK RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|53130608|emb|CAG31633.1| hypothetical protein RCJMB04_8p20 [Gallus gallus]
          Length = 424

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 181/396 (45%), Gaps = 44/396 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV  A+SGGVDS+V A LL+R GY V GV ++ ++       +G+C   +D  DA RVC 
Sbjct: 7   RVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDP---LDEQGACSVDRDCEDAYRVCQ 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++  +   Y + + N V       Y  G TP P + CN+ +KF+  L      LGAD 
Sbjct: 64  KLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADA 123

Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRP-------------MDLERDQSYFLFATTQ 182
           +ATGHY R+ L     +     KR R + R               DL +DQ++FL   +Q
Sbjct: 124 IATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQ 183

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKS---------DSQDICFVQQGKYFDVVK 233
             L    FPLGD+ K  VR +A E GL    K           S  +CF+ +  +   + 
Sbjct: 184 DALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIGERNFEKFL- 242

Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
            +       G+ V + + +++G H G   YTIGQR  L    G   FVV  D ++  + V
Sbjct: 243 -LEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGA-WFVVDKDVSTGDIFV 300

Query: 293 GPR-ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG- 347
            P  +   + R  LR   ++W+ +    + V D   +C  + R     VP  +  N DG 
Sbjct: 301 APSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGS 360

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V+V   K    +  GQ  VFY  D      LG G I
Sbjct: 361 VWVTLVKPARALTPGQFAVFYKGDE----CLGSGKI 392


>gi|260947962|ref|XP_002618278.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720]
 gi|238848150|gb|EEQ37614.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720]
          Length = 407

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 181/380 (47%), Gaps = 40/380 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            + VAMS GVDSSV AAL       V G+ +       A+  + + C   +  D ++VC 
Sbjct: 46  EIYVAMSSGVDSSVTAALYASKYPHVKGIYM-------ANWSQTAKCTESEWNDVQKVCQ 98

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS------VTRQ 135
            I +     ++E+ +   V +P    Y  G TP P + CN+ +KF  ++        TR+
Sbjct: 99  QIGIPCERVNFEKEYWADVFMPMIEMYENGLTPNPDLGCNKYIKFGKMIEHLSNKYSTRE 158

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LATGHY  +R+     G R   + +  D  +DQSY+L +T  +   ++  PLG  
Sbjct: 159 KKW-WLATGHY--ARVETAKTGPR---LLKAYDANKDQSYYLASTPSEVFKNVLMPLGHY 212

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQ--QGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            K  VR LA++ GL  A K DSQ +CFV     K+   +          G+I+  +G+I 
Sbjct: 213 TKPQVRQLAQDFGLHTASKPDSQGLCFVSPDHSKFRHFLDEFIP--PKPGNIITEDGKIW 270

Query: 254 GRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEVHRIYL 305
           G H G+ + TIGQ+ G+ +  G+P      FV     +++ +++   G  E L    + +
Sbjct: 271 GTHKGLWHATIGQKSGISMPQGDPQYQGVWFVSEKRIDTNELVIVRGGNNEKLFKSILKV 330

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF--EKSEVGVASGQ 363
            +  WLGDG    A  D     ++ RS Q+PVP+      D   +DF   KSE  +A GQ
Sbjct: 331 CDWEWLGDGELA-ATSDNLH--IQFRSLQEPVPIRSLIMKDKGEIDFHLHKSERAMAPGQ 387

Query: 364 ACVFYTSDSNEARVLGGGII 383
             V Y    +  RVLG G +
Sbjct: 388 NVVLY----DGYRVLGSGTL 403


>gi|77412720|ref|ZP_00788963.1| tRNA methyl transferase [Streptococcus agalactiae CJB111]
 gi|77161229|gb|EAO72297.1| tRNA methyl transferase [Streptococcus agalactiae CJB111]
          Length = 204

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 7/206 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V
Sbjct: 6   NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD
Sbjct: 63  ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K  
Sbjct: 123 YVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ 225
           VR +A E GL  A K DS  ICF+++
Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFMEK 204


>gi|262405518|ref|ZP_06082068.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294646343|ref|ZP_06723990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294806678|ref|ZP_06765509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262356393|gb|EEZ05483.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|292638298|gb|EFF56669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294446098|gb|EFG14734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295086173|emb|CBK67696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 379

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 173/392 (44%), Gaps = 73/392 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y      +  GS    + + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFY------ELNGST---EYLEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +ATGHY     +    Y+              D ++DQ++FL+   Q  L  +  P+G
Sbjct: 115 FYIATGHYAQNIQLNETFYI----------TYAADSDKDQTFFLWGLKQDILNRMLLPMG 164

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICF-------------VQQGK------------ 227
           D+ K   R  A E G   +A K DS  +CF             V+ G+            
Sbjct: 165 DITKAEARAWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKDWLVRNGQMSVSNSEASINN 224

Query: 228 ----------YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
                     + D ++R        G  V   G  +  H G   YTIGQRRGLG+ +  P
Sbjct: 225 SQTSGSDKQTWSDRIRR--------GRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRP 276

Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDP 336
           +FV  +D   + V++    SLE   ++L++ N +     ++  +      VKIR   Q+ 
Sbjct: 277 VFVKEIDPEKNEVMLASLSSLEKTEMWLKDWNLVN----QERTLGRSDIIVKIRYRKQEN 332

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
                  +D  ++V   +    +A GQA  FY
Sbjct: 333 YGTITVTSDHLLHVQLHEPLTAIAPGQAAAFY 364


>gi|302336036|ref|YP_003801243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Olsenella uli DSM 7084]
 gi|301319876|gb|ADK68363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Olsenella uli DSM 7084]
          Length = 380

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 180/389 (46%), Gaps = 46/389 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV + MSGGVDS++ AALL   G+DV  V ++ ++      R   C    D+ DA RV  
Sbjct: 4   RVCLGMSGGVDSALAAALLVEQGHDVKAVYMRNWSRDLPGFR---CTWADDLADAERVAV 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ +   V+D E  ++  V+     +YA G TP P V CN+TVKF          GAD +
Sbjct: 61  TLGLDLEVWDCERTYKETVVDYLVDAYAHGYTPNPDVMCNQTVKFGAFAERAFAEGADFV 120

Query: 142 ATGHYIR----------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           ATGHY R                +         RR  + R  D  +DQ+YFL+      L
Sbjct: 121 ATGHYARVGVAPPMETAPSASAPAPSASAPAPSRRATLFRAADEHKDQTYFLWRVPTGTL 180

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQ----GKYFDVVKRINAGIA 240
               FP+GD+  K  VR +    GL +  K DS  ICF+ +        DV+ R      
Sbjct: 181 ARTLFPVGDIPSKGEVRRMCAARGLGVERKPDSDGICFIGEVGIRSFLLDVLDR------ 234

Query: 241 LEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES-- 297
             GDIV    G +LGRH+G   +T+GQR+GL +  G   +VV  D  S+ V V    S  
Sbjct: 235 RPGDIVEWETGTVLGRHDGAFLFTVGQRKGLDLGGGPARYVVTTDTESNVVYVTADRSCP 294

Query: 298 -LEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354
            L   R+ L ++ W+ G    E   V      V+ R + +  P  V  + DG V VD  K
Sbjct: 295 ALWCRRLELSDVLWIAGVPPAEGDYV------VRTRHTGELRPAHVMPHADGTVSVDLAK 348

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
               VA GQ+ V Y    +    LGGGII
Sbjct: 349 PMRAVAPGQSAVIY----DGLVCLGGGII 373


>gi|51598937|ref|YP_073125.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii PBi]
 gi|73920033|sp|Q660I8|MNMA_BORGA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51573508|gb|AAU07533.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 355

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 193/369 (52%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSS+    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  N+ + + ++++ + N V++        G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNIPYEIINFQKEYYNKVVIYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY R ++      +++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYARIQI-----KEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+IV    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKY-HLG-EKKGNIVEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ +G+
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWI-NGM 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLRLITNNLIEIFLNKKDHGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|75055053|sp|Q5RB73|MTU1_PONAB RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|55728489|emb|CAH90987.1| hypothetical protein [Pongo abelii]
          Length = 422

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 187/393 (47%), Gaps = 45/393 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFAT-T 181
           +ATGHY R+ L   +  +++ I                  + +  D  + Q++FL    +
Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVFS 182

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRI 235
           Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R 
Sbjct: 183 QDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRP 242

Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295
              I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR
Sbjct: 243 GHFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPR 295

Query: 296 -ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYV 350
            +   ++R  LR   ++W+ +      V D   +C  + R     VP  +  N DG V+V
Sbjct: 296 TDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWV 355

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              ++   +A+GQ  VFY  D      LG G I
Sbjct: 356 TAVQAVRALATGQFAVFYKGDE----CLGSGKI 384


>gi|307192441|gb|EFN75657.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Harpegnathos
           saltator]
          Length = 408

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 30/382 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV MSGGVDS+V A LLK  G++V GV ++ ++ R  +   G C    D  DAR  CD 
Sbjct: 5   IVVGMSGGVDSAVTAFLLKYKGFNVTGVFMKNWDIRDET---GKCMIENDYEDARWTCDR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + +     D+ + + N V       Y  G TP P V CN+ +KF         +L AD +
Sbjct: 62  LRIPLVQVDFVKEYWNEVFSDLVEKYQTGYTPNPDVLCNKYIKFDKFFHFALNKLQADAI 121

Query: 142 ATGHYIRSRL------YVGDDGK-----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ATGHY R+        Y  D G      RR  + +  D ++DQ++FL   +QQ L    F
Sbjct: 122 ATGHYARTSFGSYLEDYKADVGTYHLILRRVRLLQAYDRDKDQTFFLSQVSQQTLRRCMF 181

Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           PLG+  K  V+ +A+E  L  IA K +S  ICFV + ++   +          GD ++L+
Sbjct: 182 PLGNYLKSHVKTIAKEASLYRIAQKKESMGICFVGKREFQHFISEYIDDKP--GDYINLD 239

Query: 250 -GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305
            G I+G+HNGI   TIGQR  +G    +  FV   D+ +S V+V       +L  + +  
Sbjct: 240 SGLIVGKHNGIHKMTIGQRCRIG-GRHKACFVSGKDQETSAVLVVEGTNHPALYTNFLIT 298

Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASG 362
           ++I+W+ +   E    +G F C  + +  +  +   V+    +  +++        +  G
Sbjct: 299 QDIHWISEEPSELRQSNGVFHCKFRFQHRKPLISCCVYKTSGEHRLFIRLSIPLRAITKG 358

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q  V Y+ +      LGG IIS
Sbjct: 359 QYAVLYSGEE----CLGGSIIS 376


>gi|323349485|gb|EGA83709.1| Slm3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 417

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 36/396 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDXKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L  L  P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304
              GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++  ++   
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324

Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355
           +R  N+   G  ED  ++ F+      ++ RS Q PV +    + R+ D   + +     
Sbjct: 325 IRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           +  +  GQ+C  Y  D    RVLG G IS    +D 
Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415


>gi|195162397|ref|XP_002022042.1| GL14198 [Drosophila persimilis]
 gi|194103940|gb|EDW25983.1| GL14198 [Drosophila persimilis]
          Length = 387

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 185/375 (49%), Gaps = 27/375 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV MSGGVDS+V A LLK  G+ V+GV ++ ++    +   G C   QD+ DA   C  
Sbjct: 5   IVVGMSGGVDSAVSAHLLKERGHRVMGVFMRNWDEHDEA---GRCSGEQDLKDAEWACQR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140
           + +     +Y + +  AV   F   Y  G TP P + CNR +KF DL       +LG D 
Sbjct: 62  LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKF-DLFHRHALDKLGYDA 120

Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY R+ L     +  D G+ R ++  P D  +DQ++FL    +Q L    FPLGD+
Sbjct: 121 VATGHYARNSLGNFLEHRADGGEARLLI--PADTFKDQTFFLAGIPRQALQRTMFPLGDL 178

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQIL 253
            K  V+ LAR +GL  +A K +S  ICFV +  +   ++   A  +  G  V ++ G I+
Sbjct: 179 AKNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIV 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           G H GI  +T+GQR  LG  + +P FV   + +S+ + V       +L    I++   NW
Sbjct: 237 GSHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNW 295

Query: 311 LG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           L        A     +C  + + ++  V   ++   DG + V  +     +  GQ  VFY
Sbjct: 296 LCVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDMPLRAITPGQYAVFY 355

Query: 369 TSDSNEARVLGGGII 383
               ++   LG G I
Sbjct: 356 ----DDVACLGAGRI 366


>gi|126338828|ref|XP_001378676.1| PREDICTED: similar to Zona pellucida protein C [Monodelphis
           domestica]
          Length = 428

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 186/391 (47%), Gaps = 40/391 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV  A+SGGVDS+V A LL+R GY+V GV ++ +++       G C A +D  DA RVC 
Sbjct: 13  RVACAVSGGVDSAVAALLLRRRGYEVTGVFMRNWDALDEVSGSG-CSADRDCEDAARVCR 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++      + + + + V   F S Y  G TP P + CN+ +KF          LGAD 
Sbjct: 72  LLDIPFRQVAFVKEYWHHVFTDFLSEYEKGRTPNPDILCNKHIKFKAFFHYALDCLGADA 131

Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRP-------------MDLERDQSYFLFATTQ 182
           +ATGHY R+ L     +   +  R R + R               DL +DQ++FL    Q
Sbjct: 132 MATGHYARTSLEDEEVFAQKEEPRPRGLFRNRFEVRNTVKLLQGADLWKDQTFFLSQAPQ 191

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           + L    FPLG + K  V+ +A E GL  +  + +S  ICF+  GK       +      
Sbjct: 192 EALRRTLFPLGGLTKAFVKKIAAENGLHHVLQRKESMGICFI--GKRHLESFLLQYLQPQ 249

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299
            G+ V + + ++LG H G   +T+GQ   +G  + +P +VV  D  S  V V P  +   
Sbjct: 250 PGNFVSIEDNKVLGTHQGCFLFTLGQGAKIG-GLRDPWYVVEKDLRSGDVFVAPGPDHPA 308

Query: 300 VHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF 352
           ++R  LR   ++W+ +     L +D ++D   C  + R     VP  +  N DG V+V  
Sbjct: 309 LYRDLLRTGRVHWIAEEPPAPLVQDKMMD---CHFRWRHQMALVPCVLTLNQDGTVWVTA 365

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            K    +A GQ  VFY  D      LG G I
Sbjct: 366 VKPMKALAPGQFAVFYKGDE----CLGSGKI 392


>gi|6320172|ref|NP_010251.1| Slm3p [Saccharomyces cerevisiae S288c]
 gi|3122982|sp|Q12093|MTU1_YEAST RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;
           AltName: Full=Mitochondrial translation optimization
           protein 2; AltName: Full=Synthetic lethal with MSS4 3
 gi|1279683|emb|CAA96456.1| unknown [Saccharomyces cerevisiae]
 gi|1431012|emb|CAA98591.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|48478823|gb|AAT44736.1| mitochondrial Mto2p [Saccharomyces cerevisiae]
 gi|190405047|gb|EDV08314.1| hypothetical protein SCRG_00535 [Saccharomyces cerevisiae RM11-1a]
 gi|207346911|gb|EDZ73261.1| YDL033Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|285810996|tpg|DAA11820.1| TPA: Slm3p [Saccharomyces cerevisiae S288c]
          Length = 417

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 36/396 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L  L  P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304
              GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++  ++   
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324

Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355
           +R  N+   G  ED  ++ F+      ++ RS Q PV +    + R+ D   + +     
Sbjct: 325 MRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           +  +  GQ+C  Y  D    RVLG G IS    +D 
Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415


>gi|293364049|ref|ZP_06610785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma alligatoris A21JP2]
 gi|292552539|gb|EFF41313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma alligatoris A21JP2]
          Length = 372

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 176/378 (46%), Gaps = 37/378 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           RVV+ MSGGVDSSV A LLK  GY+V+G+ ++ ++S   +   G+       C   QD  
Sbjct: 5   RVVIGMSGGVDSSVAAYLLKEQGYEVVGLFMRNWDSLLNNDILGNEKITQDICPQEQDYQ 64

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133
           DA  VC  + +  +  D+ + +   V   F   Y    TP P + CN+ +KF+       
Sbjct: 65  DALSVCQKLQIPLHRVDFVKEYWQNVFNNFIEEYKKARTPNPDILCNKYIKFNAFAKHAF 124

Query: 134 RQLGADVLATGHY---IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +L AD +A GHY   +  RLY            +  D  +DQ+YFL   + +QL ++  
Sbjct: 125 NELKADYIAMGHYANVVDGRLY------------KAKDENKDQTYFLAQLSHEQLKNVIM 172

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LN 249
           PL +++K  +R +A E+ L  A K DS  ICF+ +  +   ++  N   A EGD+V+ + 
Sbjct: 173 PLANLEKTQIRKIALELNLATAKKKDSTGICFIGERNFTKFLQ--NYIPAHEGDVVNIIT 230

Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            Q + +H G   YTIGQR+GL +    EP +V   D   + + V P  S E    +L   
Sbjct: 231 KQKIAKHIGCFYYTIGQRKGLNLGGNSEPHYVCGHDVLKNILYVAPASSPE----FLDSN 286

Query: 309 NWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           + +   L       +     VK R  Q  +   V+   D  V + +      V  GQ  V
Sbjct: 287 SLIASNLTLNHQNFNKENITVKFRYRQQEIKAIVEFLEDKKVKIIYNSKSQAVTPGQQVV 346

Query: 367 FYTSDSNEARVLGGGIIS 384
            Y       + LGG II 
Sbjct: 347 LYEGQ----KCLGGAIIE 360


>gi|151941963|gb|EDN60319.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256269696|gb|EEU04967.1| Slm3p [Saccharomyces cerevisiae JAY291]
 gi|259145210|emb|CAY78474.1| Slm3p [Saccharomyces cerevisiae EC1118]
 gi|323338348|gb|EGA79575.1| Slm3p [Saccharomyces cerevisiae Vin13]
          Length = 417

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 36/396 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L  L  P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304
              GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++  ++   
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324

Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355
           +R  N+   G  ED  ++ F+      ++ RS Q PV +    + R+ D   + +     
Sbjct: 325 IRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           +  +  GQ+C  Y  D    RVLG G IS    +D 
Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415


>gi|206603442|gb|EDZ39922.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase 1
           [Leptospirillum sp. Group II '5-way CG']
          Length = 361

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 184/373 (49%), Gaps = 33/373 (8%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----------SCCAGQDVY 74
           + +SGG+DS+V A LLK  G+DV G  +++++   A  + G          +CC    V 
Sbjct: 1   MGLSGGIDSTVSALLLKEAGFDVYGAIVEIWSENSAGGQSGDEREKPWFERACCHLPMV- 59

Query: 75  DARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             + +C+  +++ +   D ++ F+  ++  F   Y  G TP PC DCN  +K   L+   
Sbjct: 60  --KFLCEEYLHIPYVRIDQKQNFQKKIVDVFREGYHNGVTPNPCTDCNAEIKIKTLIDWA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            Q     +ATGHY R+   V     R R+  + + +D ++DQSYFL    +  L  + FP
Sbjct: 118 EQQKISYVATGHYARNHYSV-----RNRLWGIAQALDRKKDQSYFLSRVPEHVLRKVLFP 172

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNG 250
           LG   K+ VR+ AR   + + +  ++ + CF+        +KR   A  +   ++  +NG
Sbjct: 173 LGHWTKDKVREFARSKKIPVEEMVENMEACFLSAKNVTSFLKREEEAHSSGNWNVTDING 232

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           + +G     I  T GQR+G+GVA  E ++V  +D  +  VI+G ++ +      +R+   
Sbjct: 233 EKIGEIPTGIGLTKGQRKGIGVANSERIYVKKVDVQNKVVIMGSKKDILNRNFRIRDP-- 290

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           LG  LF+  +      FVK RS  + VP  +++ D  +  +      GV  GQ  VFY  
Sbjct: 291 LGP-LFQKKITGNL--FVKFRSVMEAVPC-IEKGD--LRFELSNENDGVTPGQIAVFY-- 342

Query: 371 DSNEARVLGGGII 383
             +E  VLG GI+
Sbjct: 343 -DDEQMVLGSGIL 354


>gi|207093038|ref|ZP_03240825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 260

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 151/278 (54%), Gaps = 24/278 (8%)

Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           G+TP PC  CN  +KF   L    +LG + +ATGHY R +     +  +   +   +D  
Sbjct: 1   GQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYARVK-----EIDKVSYIQEALDKT 55

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQG 226
           +DQSYFL+A   + +  L FPLGD+ K+ ++ LA      +G  +    +SQ+ICFV++ 
Sbjct: 56  KDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS 114

Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDK 285
            Y D +K+ +  +  EG + +L G+I+G H G + YTIG+R+G  +    EP FVV +D 
Sbjct: 115 -YIDTLKK-HVEVEKEGVVKNLQGEIIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDA 172

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             + ++VG +E L  H +  +  + + D  F+       + F+K R    PV  FV   D
Sbjct: 173 KKNELVVGKKEDLATHSLKAQNKSLMKD--FKSG-----EYFIKARYRSVPVKAFVSLKD 225

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           + + V+F++   GVA GQA V Y  D     +LGGG+I
Sbjct: 226 EVIEVEFKEPFYGVAKGQALVVYQDDI----LLGGGVI 259


>gi|195130901|ref|XP_002009889.1| GI15611 [Drosophila mojavensis]
 gi|193908339|gb|EDW07206.1| GI15611 [Drosophila mojavensis]
          Length = 380

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 192/386 (49%), Gaps = 26/386 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK  G++V+GV ++ ++    +   G C   QD+ DA   C  
Sbjct: 5   VVVGISGGVDSAVSAHLLKERGFNVLGVFMRNWDEHDEA---GRCSGEQDLKDAEWACRR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140
           +N+     +Y +++  +V   F   Y  G TP P + CN+ +KF DL      + L  D 
Sbjct: 62  LNIELRQVNYVKQYWTSVFSQFLDDYQQGLTPNPDILCNKHIKF-DLFHQHALQTLQYDA 120

Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY R+ L     + G        +  P D  +DQ++FL    Q  L    FPLG +
Sbjct: 121 IATGHYARNSLGDFLEHAGSQMTEDVRLLIPADTFKDQTFFLAGIAQAALRRTMFPLGGL 180

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQIL 253
           KK +V++LAR +GL  +A+K +S  ICFV +  +   ++      +  G+ V ++ G+I+
Sbjct: 181 KKTAVKELARRIGLQRLAEKRESTGICFVGKRDFKAFIREYIT--SKPGNFVDIDSGRIV 238

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           G H G+  +T+GQR  L   + +P FV   D  S+ + V       +L   RI++  +NW
Sbjct: 239 GTHEGVHQWTVGQRCRLSSYL-QPYFVARKDAASNIIYVAAGHEHPALHSTRIHIDAVNW 297

Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           L     +    +G  +C  + + ++  V   ++  +    V  +     +  GQ  VFY 
Sbjct: 298 LCSRARQQLATEGSLRCRFRFQHTKPLVDCQLRPFE----VQLDAPLRAITPGQYAVFYD 353

Query: 370 SDS--NEARVLGGGIISGSKRSDAVE 393
             +    AR+L G  +   ++  A+E
Sbjct: 354 DVACLGAARILHGEPLQCLEQQVAME 379


>gi|114794425|pdb|2HMA|A Chain A, The Crystal Structure Of Trna (5-Methylaminomethyl-2-
           Thiouridylate)-Methyltransferase Trmu From Streptococcus
           Pneumoniae
          Length = 376

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 179/365 (49%), Gaps = 25/365 (6%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
            A LLK  GYDVIG+  + ++    +   G C A +D  D   V D I + +Y  ++E+ 
Sbjct: 25  TALLLKEQGYDVIGIFXKNWDD---TDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKE 81

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           + + V   F + Y AG TP P V CN+ +KF   L     LGAD +ATGHY  +R+   +
Sbjct: 82  YWDRVFEYFLAEYRAGRTPNPDVXCNKEIKFKAFLDYAITLGADYVATGHY--ARVARDE 139

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           DG    +  R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR LA E GL  A K 
Sbjct: 140 DGTVHXL--RGVDNGKDQTYFLSQLSQEQLQKTXFPLGHLEKPEVRRLAEEAGLSTAKKK 197

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM- 274
           DS  ICF+ +  + + +   N   A  G    ++G+  G H G+  YTIGQR GLG+   
Sbjct: 198 DSTGICFIGEKNFKNFLS--NYLPAQPGRXXTVDGRDXGEHAGLXYYTIGQRGGLGIGGQ 255

Query: 275 ----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327
                 P FVV  D + + + VG     +SL    +   ++++  +   E  +    +C 
Sbjct: 256 HGGDNAPWFVVGKDLSKNILYVGQGFYHDSLXSTSLEASQVHFTREXPEEFTL----ECT 311

Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
            K R  Q    V V    +   V F + +  +  GQA VFY  +      LGGG+I  + 
Sbjct: 312 AKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGE----ECLGGGLIDNAY 367

Query: 388 RSDAV 392
           R   V
Sbjct: 368 RDGQV 372


>gi|224533363|ref|ZP_03673957.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|224513528|gb|EEF83885.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
          Length = 355

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 191/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    + + GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIIKKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|224532293|ref|ZP_03672925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia valaisiana VS116]
 gi|224511758|gb|EEF82164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia valaisiana VS116]
          Length = 355

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 191/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYKIINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYIEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTLEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       ++  ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQA-----KEKIFLLKQAKDKIKDQSYFLSHLSQKQMSKLCFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKY-HLG-EEKGNIIEKETGKIMGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + V   E+   +  R +L  EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYVSHNENYLKQAKRKFLVHEIHWIND-- 288

Query: 316 FEDAVVDGFKCF-VKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               +   FK F +KIR  +      ++  +++ + +   K + G++ GQ  +FY +   
Sbjct: 289 ----IPQDFKNFKIKIRHGEKKYSCKLKLISNNLIEISLNKEDHGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
             + LGG  I
Sbjct: 342 -TKCLGGAKI 350


>gi|296192066|ref|XP_002743906.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1
           [Callithrix jacchus]
          Length = 421

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 186/396 (46%), Gaps = 52/396 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LLKR GY V GV ++ ++        G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLKRRGYQVTGVFMKNWD---LLDEHGVCAADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++      Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDLPFRQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFRYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLER-------------------DQSYFLFATT 181
           +ATGHY R+    G+  +++ I  RP  L R                   DQ++FL   +
Sbjct: 123 IATGHYARTSQEDGEVFQQKHIK-RPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVS 181

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRI 235
           Q  L    FPLG + K+ V+ +A E  L  +  K +S  +CF+ +  +   +      R 
Sbjct: 182 QDALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLPSRP 241

Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295
              I++E      + ++LG H G   YT+GQR  +G  +  P +VV  D     V V PR
Sbjct: 242 GQFISIE------DHKVLGTHKGWFLYTLGQRANIG-GLRAPWYVVEKDSAKGDVFVAPR 294

Query: 296 -ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG- 347
            +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N DG 
Sbjct: 295 LDHPALYRDLLRTSRVHWITEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGT 351

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V+V   ++   +A+GQ  VFY         LG G I
Sbjct: 352 VWVTAVQAVHALATGQFAVFYKG----GECLGSGKI 383


>gi|332179300|gb|AEE14989.1| tRNA methyl transferase [Thermodesulfobium narugense DSM 14796]
          Length = 337

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 184/367 (50%), Gaps = 32/367 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V +SGG+DS   A LL+  G+DVI + ++L+++ +   R            A+ +
Sbjct: 2   NKRVIVGISGGIDSFYTAFLLRNSGFDVICLYIKLFDNHETFFR------------AKML 49

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + V    +D  + F+  V+    +    G TP PC  CN  +KF  L  +      D
Sbjct: 50  GELLGVKFEFYDAIKEFKKEVVDRSINMTLLGYTPNPCAFCNMKIKFRILEKIRSDFNYD 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY++      DD  R   + R  D ++DQSYFL       L +  FPLGD  K+ 
Sbjct: 110 YISTGHYVKI---FHDDITR---IFRGFDEKKDQSYFLALVPSIYLKNAIFPLGDFTKKY 163

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           V+ + +E      D S SQD+CFV++G Y  +++ I  G+ + G  ++   +++  H G 
Sbjct: 164 VKKVMQEKYSFWKDISSSQDLCFVKKG-YKKLIQDI-CGVKV-GKFLY-KDKVVANHLGS 219

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIG+ RGLG      L+V  L+   + V +  RE      I + ++N+  +      
Sbjct: 220 YLYTIGESRGLGHKEPVKLYVESLNHEKNEVYLNTREFCYKSSIIVTDLNFFNE------ 273

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           + D  +C V+IR    PV   +Q N++ ++V F +       GQ   FY+ D+ E  +LG
Sbjct: 274 LPD--RCLVQIRYQAKPVICDIQFNENKLHVSFHEKVFAPTPGQIASFYSLDNRE--LLG 329

Query: 380 GGIISGS 386
           GGII G+
Sbjct: 330 GGIIIGT 336


>gi|26554279|ref|NP_758213.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma penetrans HF-2]
 gi|30173413|sp|Q8CXQ3|MNMA_MYCPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|26454288|dbj|BAC44617.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma penetrans HF-2]
          Length = 370

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 182/378 (48%), Gaps = 32/378 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--------NSRKASKRKGSCCAGQDV 73
           +V+V +SGGVDSSV A LLK  GYDV+GV +Q +        N+     +  +C A  D 
Sbjct: 3   KVIVGISGGVDSSVSAYLLKLRGYDVMGVFMQNWDPYINKESNNDAIKSKLDTCEAEYDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A +VC  + +     ++ + + + V  PF   Y  G TP P + CN+ +KF       
Sbjct: 63  QIASKVCQRLGIKLERINFIKEYWDMVFEPFLDEYKKGLTPNPDILCNKYIKFGAFHKYC 122

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                 D +ATGHY   R    +       +    D+E+DQ+YFL +  Q QL    FPL
Sbjct: 123 FENFDCDYIATGHYADVRF---NQANNIYELLEAKDIEKDQTYFLCSLNQSQLSKSIFPL 179

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251
            D+ K+ VR++A ++GLD  DK DS  ICF+ +  + + +   N      G I+ ++  +
Sbjct: 180 ADLTKKEVREIANKIGLDNWDKKDSTGICFIGERNFKNFLH--NYIDKKPGKIIDIDTSK 237

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRES----LEVHRIYLR 306
            +G H GI  YTIGQR+GL +       FV   D +++ + V   ES    L        
Sbjct: 238 EVGTHEGIHFYTIGQRKGLNLGGNSSRYFVCKKDISNNILYVTSNESKLKNLSSVVATCS 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQAC 365
             NW+G       V +  K  ++IR S++ +   F    D+ V  +F+  EV ++ GQ  
Sbjct: 298 YFNWIG------YVPNNNKVEIRIRHSKNKINGHFKILKDNVVQFEFDSPEV-ISPGQYI 350

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y     +   LGGG I
Sbjct: 351 VAYQ----KGVCLGGGPI 364


>gi|193216582|ref|YP_001999824.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma arthritidis 158L3-1]
 gi|229486415|sp|B3PM68|MNMA_MYCA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|193001905|gb|ACF07120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma arthritidis 158L3-1]
          Length = 370

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 188/375 (50%), Gaps = 32/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   RVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDYA 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+ V   +N+  Y  D+ + + + V       Y  G TP P + CN+ +KF+    V  
Sbjct: 64  DAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFCNKYIKFNFFAQVAF 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +  AD +A GHY        ++G+    + +  D  +DQSYFL   + +QL  + FPL 
Sbjct: 124 SKYQADFIAMGHYAYC-----ENGE----LFKAKDDSKDQSYFLAQLSNEQLKKVIFPLA 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ K+ VR++A+ + L  A K DS  ICF+ + K+   ++  N   A  G I+ +   Q+
Sbjct: 175 NLTKQEVREIAKNLNLATATKKDSTGICFIGERKFTKFLE--NYIPAQPGKIIDIATKQV 232

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +G H G + YTIGQR+GL +    +P FVV  +     + V   +  E    YL     +
Sbjct: 233 VGSHIGTMYYTIGQRKGLNLGGFSKPYFVVGHNLEKKVLYVANEDFPE----YLLSDKLI 288

Query: 312 GDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
             G  + A   D      K R  Q  +P+ ++   +  + V +  +E  V  GQ  V Y 
Sbjct: 289 AIGFNQIAYKFDTNNLSAKFRYRQKDIPIKLKLLANSEIEVSYNDTE-AVTPGQEIVIY- 346

Query: 370 SDSNEARVLGGGIIS 384
            D N  +V+GG II+
Sbjct: 347 -DGN--KVVGGAIIN 358


>gi|282856175|ref|ZP_06265458.1| tRNA methyl transferase [Pyramidobacter piscolens W5455]
 gi|282585934|gb|EFB91219.1| tRNA methyl transferase [Pyramidobacter piscolens W5455]
          Length = 346

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 178/370 (48%), Gaps = 39/370 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V +SGGVDS++ A  L+  GYDV    L L +             G+D  D  R+  
Sbjct: 4   KILVGVSGGVDSALSALRLRDLGYDVTAAHLILKD-------------GEDPTDRLRLER 50

Query: 82  TI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
              +V  +  D   RF   V+ PF  +Y  G TP PCV CN  +KF  L  +  +LG D 
Sbjct: 51  LARHVPVHELDCRARFCERVVRPFLDAYRKGLTPNPCVICNAALKFRALFELADRLGIDK 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES- 199
           +ATGHY R    V   G+R  I     D  +DQ+Y L     + L  L FPL + + ++ 
Sbjct: 111 VATGHYAR----VLKRGRRWAIA--RTDSPKDQTYMLCRLPHEWLSRLCFPLSEERSKTG 164

Query: 200 -VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE----GDIVHLNGQILG 254
              +LA  +G +   + DSQ ICF++ G    + + +   +A E    G +V  +G+ LG
Sbjct: 165 VKNELASRLGAERLAQGDSQGICFLEGG---SLERFLEDHLAAEERHIGRMVGHDGEDLG 221

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G+I YT GQRRGLG++ G P FV   D  S+R+++       V  IY     W    
Sbjct: 222 PHKGLIFYTEGQRRGLGLSRG-PWFVARRDFASNRLLLSHGTEATVGTIYFENARW---- 276

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +  V  G  C V+      PVP      +D G  V+ ++    V+ GQA V Y  D  
Sbjct: 277 --QQEVRAGQDCLVQYCYRARPVPGRLADCHDGGGTVELQEPAGSVSIGQALVLY--DVA 332

Query: 374 EARVLGGGII 383
           E  +LGGG I
Sbjct: 333 ERVLLGGGFI 342


>gi|255728973|ref|XP_002549412.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404]
 gi|240133728|gb|EER33284.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404]
          Length = 426

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 187/385 (48%), Gaps = 39/385 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D  ++VAMS GVDSSV AAL  ++  +V G+ +       A+  + + C  +D  D +
Sbjct: 64  PED-HIIVAMSSGVDSSVCAALF-QNYKNVHGIYM-------ANWSQNATCTERDWRDVQ 114

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           +VC  +N+     ++E  + N V +P    Y  G TP P + CN+ VKF  L     Q  
Sbjct: 115 KVCQDLNIDCERVNFEHEYWNDVFLPMIEKYERGLTPNPDIGCNKYVKFGKLAEYLEQKY 174

Query: 137 --GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 L TGHY R    +  +      + R +   +DQSY+L +     L     P+G 
Sbjct: 175 HGKKWWLVTGHYARV---MKHNATGEYHLLRGLSSRKDQSYYLSSIPASILSKTILPIGH 231

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHLNGQI 252
             K  +R+LA++  L  A K DSQ +CFV   Q  + D +       A  GDIV  +G +
Sbjct: 232 YTKPEIRELAKKFNLHTASKPDSQGLCFVNPNQSNFRDFLNEYIP--ANPGDIVTEDGTV 289

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLF--VVY-----LDKNSSRVIVG---PRESLEVHR 302
            G+H G+ + TIGQR  + +  G+P +  V +     ++KN   ++ G   P+   +V  
Sbjct: 290 WGKHKGLWHATIGQRSTVSMPQGDPKYQGVWFVSEKNIEKNQLVIVKGTDNPKLFKQV-- 347

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVAS 361
           + + ++ W+     ++ V+       +  S   PVPV V +N  D + ++ EK    +A 
Sbjct: 348 VEITDLEWIQP---KEKVLAMDNVQFQYHSLTTPVPVKVIKNKGDKLIIELEKPARALAP 404

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQ  + Y    N  +VLGGG+I+ +
Sbjct: 405 GQGGILY----NGNQVLGGGMINKT 425


>gi|50556890|ref|XP_505853.1| YALI0F25069p [Yarrowia lipolytica]
 gi|49651723|emb|CAG78664.1| YALI0F25069p [Yarrowia lipolytica]
          Length = 399

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 182/385 (47%), Gaps = 40/385 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           P D  V VAMS GVDSSV AAL+ +R    V GV ++ ++         S CA  D  D 
Sbjct: 35  PND-HVYVAMSAGVDSSVTAALMAERYKGRVTGVFMRNWSP-------DSKCAEADWNDV 86

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-- 134
           ++VC  I++       E+ +   V  P    Y  G TP P V CNR +KF  L    +  
Sbjct: 87  QQVCAHIDIPAVNLSLEKEYWLEVFEPMLERYRQGLTPNPDVSCNRYIKFGSLKHRLKDR 146

Query: 135 -----QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                  G   LATGHY R    V  D      + RP  L +DQSY+L +     L ++ 
Sbjct: 147 HENSGMEGDWWLATGHYAR----VMTDESGTPGLFRPKHLAKDQSYYLSSVNSDSLRNVM 202

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVH 247
           FPL D  K  +R++A    L +A K DSQ +CFV Q   K+ D +    +     G+++ 
Sbjct: 203 FPLSDYLKPEIREMAHAYKLHVASKPDSQGLCFVSQDQRKFRDFLSDYIS--TTPGNVIT 260

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLE 299
             G+++G+HNG+ N T+GQ+ G+ +  G P      FV   + +++ +++   G   SL 
Sbjct: 261 EEGEVVGQHNGLWNATVGQKSGICLPQGNPKYRGSWFVKEKNIDTNELVIVKGGNHPSLF 320

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358
              I  +  +WLG    + A + G    ++ RS  +PV +  +    + + +        
Sbjct: 321 SSNIKAKYFSWLGT---KPADLSGMNLTIQFRSLMEPVAITNLAIEGEDIAIRTAVPVRA 377

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           V+ GQ  V Y  D    RVLG G+I
Sbjct: 378 VSPGQNLVLYHED----RVLGCGVI 398


>gi|198467713|ref|XP_002134614.1| GA22395 [Drosophila pseudoobscura pseudoobscura]
 gi|198149375|gb|EDY73241.1| GA22395 [Drosophila pseudoobscura pseudoobscura]
          Length = 387

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 27/375 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV MSGGVDS+V A LL+  G+ V+GV ++ ++    +   G C   QD+ DA   C  
Sbjct: 5   IVVGMSGGVDSAVSAHLLRERGHRVMGVFMRNWDEHDEA---GRCSGEQDLKDAEWACQR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140
           + +     +Y + +  AV   F   Y  G TP P + CNR +KF DL       +LG D 
Sbjct: 62  LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKF-DLFHRHALDKLGYDA 120

Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY R+ L     +  D G+ R ++  P D  +DQ++FL    +Q L    FPLGD+
Sbjct: 121 VATGHYARNSLGNFLEHRADGGEARLLI--PADTFKDQTFFLAGIPRQALQRTMFPLGDL 178

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQIL 253
            K  V+ LAR +GL  +A K +S  ICFV +  +   ++   A  +  G  V ++ G I+
Sbjct: 179 AKNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIV 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           G H GI  +T+GQR  LG  + +P FV   + +S+ + V       +L    I++   NW
Sbjct: 237 GSHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNW 295

Query: 311 LG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           L        A     +C  + + ++  V   ++   DG + V  +     +  GQ  VFY
Sbjct: 296 LCVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDIPLRAITPGQYAVFY 355

Query: 369 TSDSNEARVLGGGII 383
               ++   LG G I
Sbjct: 356 ----DDVACLGAGRI 366


>gi|323305735|gb|EGA59475.1| Slm3p [Saccharomyces cerevisiae FostersB]
          Length = 417

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 192/396 (48%), Gaps = 36/396 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGXLREWLDEKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L  L  P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304
              GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++  ++   
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324

Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355
            R  N+   G  ED  ++ F+      ++ RS Q PV +    + R+ D   + +     
Sbjct: 325 XRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           +  +  GQ+C  Y  D    RVLG G IS    +D 
Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415


>gi|312148210|gb|ADQ30869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi JD1]
          Length = 355

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|15595027|ref|NP_212816.1| tRNA-specific 2-thiouridylase MnmA [Borrelia burgdorferi B31]
 gi|223889488|ref|ZP_03624074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 64b]
 gi|226321380|ref|ZP_03796907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi Bol26]
 gi|8134738|sp|O51625|MNMA_BORBU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2688619|gb|AAC67035.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|223885174|gb|EEF56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 64b]
 gi|226233176|gb|EEH31928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi Bol26]
          Length = 355

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|170575385|ref|XP_001893218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Brugia malayi]
 gi|158600895|gb|EDP37948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Brugia malayi]
          Length = 383

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/394 (31%), Positives = 193/394 (48%), Gaps = 60/394 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV A+SGGVDS+V A LLK+ G+DVIGV   + N  +A +   +C    D  DA +VC+
Sbjct: 6   KVVCAISGGVDSAVSAYLLKKRGFDVIGV--HMVNWDRAEEDSNNCPQSVDEKDAEKVCN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +  YV ++ +++ N + +    +Y  G T +  V CN+T+KF         +L AD 
Sbjct: 64  HLQIPFYVTNFVDKYWNEIFMYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFDELQADA 123

Query: 141 LATGHYIRSRLYVGDDGKRR------RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGH+ R+    GD  + R      R++   +D  +DQ++FL   TQ QL    FP+G 
Sbjct: 124 VATGHFARTSF--GDFLENRLETGLIRLLA-AVDPIKDQTFFLSTLTQSQLRRSMFPVGS 180

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHLNGQ 251
           + K+ VR +A + G+D IA+K +S  +CF+ + K FD  + + I   I    DI    G+
Sbjct: 181 LTKQQVRQIAIDAGMDEIAEKRESMGLCFIGKRKRFDAFISQYIEPVIGPAKDID--TGK 238

Query: 252 ILGRHNGIINYTIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303
           ++  H GI +YTIG+R  +       A+G  LF   LD  +  + V       +L     
Sbjct: 239 VIFEHKGIHHYTIGKRITMVPDHCQSAVG--LFAAGLDDKTQTLWVCQGSHHPALFAREF 296

Query: 304 YLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-- 359
            + E  W+ +  F DA V    F+C               QR    +  +  + E G+  
Sbjct: 297 VVEEPVWISECPFGDAGVIKMEFRC---------------QRTHPALLCELTRLEKGLLK 341

Query: 360 ----------ASGQACVFYTSDSNEARVLGGGII 383
                     A GQ CVFY    N++  LGGG I
Sbjct: 342 VKPYNPIRAAAPGQICVFY----NDSECLGGGEI 371


>gi|219684476|ref|ZP_03539420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii PBr]
 gi|219672465|gb|EED29518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii PBr]
          Length = 355

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 192/369 (52%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY R ++      +++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYARIQI-----KEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+IV    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIVEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ +G+
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWI-NGM 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLRLITNNLIEICLNKKDHGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|218249186|ref|YP_002375182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi ZS7]
 gi|226704767|sp|B7J2N7|MNMA_BORBZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218164374|gb|ACK74435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi ZS7]
          Length = 355

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKY-HLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|254442923|ref|ZP_05056399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobiae bacterium DG1235]
 gi|198257231|gb|EDY81539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobiae bacterium DG1235]
          Length = 360

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 182/374 (48%), Gaps = 30/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++VAMSGGVDS+V A LLK  G+ + G  ++  N     +  G C   QD+ DA  V +
Sbjct: 3   KILVAMSGGVDSAVAALLLKEQGHAIEGAYMK--NWINEDEILGDCPWQQDIEDAAAVAE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V +  + +R+ ++    + Y +G TP P V CNR +KF   L    + G D +
Sbjct: 61  ALGIPFRVVNLMQEYRSRIVDYLLAGYQSGITPNPDVMCNREIKFGVFLDYALENGFDEV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R    +   + R +    D  +DQ+YFL      Q+   RFP+G + K  +R
Sbjct: 121 ATGHYAQIR----ETEDQPRAIIEGADPNKDQTYFLAKMRADQVARARFPVGHLLKPELR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNG 258
           +LA+   L  A K DSQ ICF+   K  D ++       G  +  D    + Q LG+H G
Sbjct: 177 ELAQTASLPNAKKKDSQGICFIGNIKMSDFLREYVPDRPGPIIRAD----DDQTLGQHRG 232

Query: 259 IINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLREINWL 311
           +  +TIGQRRG+G+      E   VV  D   + ++V         L   R  +  +++ 
Sbjct: 233 LHYFTIGQRRGIGIPSNTDNEFYVVVGKDIQRNALLVSFEAPTAPGLYSSRCEISSLSYT 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
           G+   +D  ++      K+R     V +   R + + + V F++ +  +A GQ   FY  
Sbjct: 293 GEPFPDDCRIEA-----KVRYRDPRVAITCHRLSPETIEVTFDQPQRALALGQIIAFYRG 347

Query: 371 DSNEARVLGGGIIS 384
                ++LGGG+ +
Sbjct: 348 ----PQLLGGGVYT 357


>gi|225551719|ref|ZP_03772662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia sp. SV1]
 gi|225371514|gb|EEH00941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia sp. SV1]
          Length = 355

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 188/370 (50%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINNQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+QL  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQLSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTAGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      +Q   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGKKKYSCKLQLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|299752841|ref|XP_001832878.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprinopsis cinerea okayama7#130]
 gi|298410025|gb|EAU88908.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprinopsis cinerea okayama7#130]
          Length = 369

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 184/383 (48%), Gaps = 39/383 (10%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL +  YD+  V ++ +++R  S     C   +D  D +RVC  +++ 
Sbjct: 1   MSGGVDSSVAALLLAQQDYDLSAVFMRNWDTRDESGSDRGCEWEKDWEDVQRVCKKLDIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT------VKFSDLLSVTRQLGAD- 139
             + D    + N V  P    +  G TP   V CNR       +KF  LL    +L  D 
Sbjct: 61  CSMIDLSREYWNRVFEPSLQQWELGTTPNADVWCNRKAEDNREIKFGALL---ERLPPDS 117

Query: 140 -----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                  ATGHY R     G + + +  + RP D  +DQ+Y+L + ++  L    FP+  
Sbjct: 118 SGQRPWFATGHYARKTWSEGPNARPK--LVRPADGHKDQTYYLSSISESGLQRALFPINH 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVK-RINAGIALEGDIV-HLNGQ 251
           ++K  VR+LA++  L  A + DS  ICFV ++ K+ + +    N   A +G I+    G+
Sbjct: 176 LQKPQVRELAQKHDLHNAQRPDSVGICFVGEKAKFHNFLSCPANYIPAQKGLIIDETTGK 235

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG+H G+ NYTIG+   L    G P  +    K+ S   +   ESL  + I + E  W 
Sbjct: 236 VLGKHQGLWNYTIGEGSRLP---GMPTRMAVSRKDPSTNTIY-HESLYTNVINVPEFTW- 290

Query: 312 GDGLFEDAV------VDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
              ++ D+V       +GF+  V  R     VP  V+R+   GV V  +  E  V  GQ 
Sbjct: 291 ---IWSDSVPTELDTPEGFRASVMHRYRMKAVPCTVRRSSGQGVTVQCDDLEQAVTPGQV 347

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            V Y+ D      LG G+I+ S+
Sbjct: 348 AVLYSDD----WCLGCGVIASSE 366


>gi|111115515|ref|YP_710133.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii PKo]
 gi|122956331|sp|Q0SMH1|MNMA_BORAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110890789|gb|ABH01957.1| hypothetical protein BAPKO_0726 [Borrelia afzelii PKo]
          Length = 355

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 189/369 (51%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   GSC   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY  +++   D   ++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHY--AKIQTKD---KKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A+ + L   ++ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE--SLEVHRIYL-REINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E  S +  R +L  EI+W+ +G 
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWI-NGT 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   + FK  +KIR  +      ++    + + +   K + G++ GQ  +FY +    
Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa]
 gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 176/380 (46%), Gaps = 31/380 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +R+ V +SGGVDSSV   LL   G+      L+++     +     C   +D+  A+ 
Sbjct: 6   KPLRIAVLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFNNFWSECPWEEDLKFAKG 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD + V   V    + + + V+      Y  G TP P V CN  +KF   +     +  
Sbjct: 66  VCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAINNMEF 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A+GHY      V D   +  ++    D  +DQ+YFL   TQ QL  L FPLG + KE
Sbjct: 126 DYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLIFPLGCIPKE 185

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
            VR+LA +  L   D+ DSQ ICF+ + K+ + V R    + G+ LE +     G  LG 
Sbjct: 186 EVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRHIGESEGVILEAE----TGDFLGI 241

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLR--EINWLG 312
           H G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   + WL 
Sbjct: 242 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGSLKWLS 300

Query: 313 DG------LFEDAVVDG---FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
                     +  V  G   + C VKI   +D         ++ V V   + + G+A+GQ
Sbjct: 301 GSPTDMTTQLQCKVRHGPTFYDCSVKIELGED-------SPEEVVAVHLCEDDQGLAAGQ 353

Query: 364 ACVFYTSDSNEARVLGGGII 383
              FY   +     +G G+I
Sbjct: 354 FTAFYQGRT----CIGSGVI 369


>gi|216263504|ref|ZP_03435499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia afzelii ACA-1]
 gi|215980348|gb|EEC21169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia afzelii ACA-1]
          Length = 355

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 189/369 (51%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   GSC   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY  +++   D   ++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHY--AKIQTKD---KKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A+ + L   ++ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE--SLEVHRIYL-REINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E  S +  R +L  EI+W+ +G 
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWI-NGT 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   + FK  +KIR  +      ++    + + +   K + G++ GQ  +FY +    
Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|156839411|ref|XP_001643397.1| hypothetical protein Kpol_479p27 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114005|gb|EDO15539.1| hypothetical protein Kpol_479p27 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 415

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 197/393 (50%), Gaps = 35/393 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           +++AMS GVDSSV  AL      +  G+ +Q ++  +AS   G   C  +D  D  +V  
Sbjct: 29  IIIAMSSGVDSSVAGALFAGSYPNARGIFMQNWSKDEASLDDGKEACFEKDWKDVVKVGS 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD- 139
            +N+     ++E+ +   V  P    Y  G TP P ++CNR VKF  L+  +  + G + 
Sbjct: 89  HLNLPVDYINFEKDYWIDVFEPMLDVYKRGMTPNPDINCNRHVKFGKLVDHLNSKYGENN 148

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY R  L   +D +    + +     +DQSY+L       L +L  P+G M K 
Sbjct: 149 YWLVTGHYARC-LKSTEDSQTH--LLKSYYKNKDQSYYLSQIKNGILSNLILPMGHMTKP 205

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRI---NAGIALEGDIVHLNGQI 252
            VR+LA E  L  A+K+DSQ ICFV   Q GK+ + ++     + G  +  D V     I
Sbjct: 206 EVRELAIEAELPTAEKADSQGICFVNNSQHGKFKNFLQSYLPESKGNIITIDPVSSEKII 265

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEP----LFVVYLDKNSSR--VIVGPRESLEVHRIYLR 306
            G+H G+ +YTIGQ+ GL +  G+P     + V   +N +   VIV  R+   + +  L+
Sbjct: 266 WGQHQGLWSYTIGQKIGLSMPQGDPRYKGTWFVSEKRNDTNEIVIVKGRDHPSLFQRQLQ 325

Query: 307 EINWLGDGLFEDAVV-------DGFKCFVKIRSSQDPV---PVFVQRNDDG--VYVDFEK 354
             +++  G+ ++ ++       +  +  ++ RS QDP+    + +  N+D   + +  ++
Sbjct: 326 VKDFIPIGISKEQLINLCNSSTNSNELKIQYRSLQDPIDVESIKINPNEDSSMITITLKE 385

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           S+  +  GQ C  Y +D    RVLG GIIS ++
Sbjct: 386 SQRAMVPGQYCCMYIND----RVLGSGIISKTR 414


>gi|312070856|ref|XP_003138339.1| hypothetical protein LOAG_02754 [Loa loa]
 gi|307766493|gb|EFO25727.1| hypothetical protein LOAG_02754 [Loa loa]
          Length = 383

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 192/394 (48%), Gaps = 60/394 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV A+SGGVDS+V A LLK+ G+DVIGV   + N  +  +    C    D  DA +VC+
Sbjct: 6   KVVCAISGGVDSAVSAYLLKKRGFDVIGV--HMVNWDRVEEDSSKCPQSVDEKDAEKVCN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +  YV ++ +R+ N +      +Y  G T +  V CN+T+KF         +L AD 
Sbjct: 64  HLQIPFYVANFVDRYWNEIFTYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFDELQADA 123

Query: 141 LATGHYIRSRLYVGDDGKRR------RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGH+ R+    GD  ++R      R++   +D  +DQ++FL   TQ QL    FP+G 
Sbjct: 124 VATGHFARTSF--GDFLEKRLETGLIRLLA-AVDPIKDQTFFLSTLTQSQLRRSMFPIGS 180

Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHLNGQ 251
           + K+ VR +A ++G+ +IA+K +S  +CF+ + K+FD  + + I   I    DI    G+
Sbjct: 181 LTKQQVRQIAVDVGMAEIAEKPESMGLCFIGKRKHFDTFINQYIEPVIGPAKDID--TGK 238

Query: 252 ILGRHNGIINYTIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303
           ++  H GI +YTIG+R  +       A+G  LF V LD  +  + V       +L     
Sbjct: 239 VVFEHKGIHHYTIGKRITMVPDHCQSAVG--LFAVGLDGKTQTLWVCQGSHHPALFAREF 296

Query: 304 YLREINWLGDGLFED--AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-- 359
            + E  W+ +    D   +   F+C               QR    +  +  + E G+  
Sbjct: 297 VVEEPLWISECPLGDTGTIKTEFRC---------------QRTHPALLCEITRLEKGLLK 341

Query: 360 ----------ASGQACVFYTSDSNEARVLGGGII 383
                     A GQ CVFY    N++  LGGG I
Sbjct: 342 VKPYNPIRAAAPGQICVFY----NDSECLGGGEI 371


>gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 376

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 175/387 (45%), Gaps = 36/387 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + + V +SGGVDSSV   LL   G+      L+++           C    D+ +A+ VC
Sbjct: 1   LNIAVLLSGGVDSSVALRLLCAAGHSCTAYYLKIWFQEDFENFWSECPWEDDLKNAQAVC 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V  + + + N V+    S   AG TP P + CN  VKF   L   +    D 
Sbjct: 61  DEVGVELRVVHFTDEYWNLVVSHSISEIQAGRTPNPDILCNTCVKFGAFLDHIKDEQFDR 120

Query: 141 LATGHYIRSR-LYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           +A+GHY R R +Y  D G   R   ++C   D  +DQ+YFL   TQ+QL  L FPLG   
Sbjct: 121 VASGHYARIRKIYNCDTGAEERTELLLCP--DEVKDQTYFLSHLTQEQLSRLIFPLGGFT 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253
           K  VR LA  MGL   ++ DSQ ICF+ + K+ D + +    + G  LE +     G++L
Sbjct: 179 KAEVRQLAEVMGLYNKNRKDSQGICFLGKVKFSDFIAKHLGESEGRMLEAE----TGELL 234

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINW 310
           G H G   YT+GQR+GL  + G P FVV  D  ++ V V      E  R     +   NW
Sbjct: 235 GLHKGFWFYTMGQRKGLRFSNG-PWFVVAKDIVNNVVFVSRHYFSEDKRRRSFRVDSFNW 293

Query: 311 LGDGLFEDAVVDGFKCFVK-------------IRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
                F  A   G +C V+               S+         ++     V+  + + 
Sbjct: 294 FSG--FPPADNSGLQCKVRHGPRFYTCSLDIQTDSTDSEAVTKESKSLTSAVVNLNEDDQ 351

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
           G+A GQ   FY +       LG  +I+
Sbjct: 352 GLAPGQYAAFYQN----GVCLGSAVIT 374


>gi|324518702|gb|ADY47178.1| tRNA-specific 2-thiouridylase 1 [Ascaris suum]
          Length = 382

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 192/383 (50%), Gaps = 38/383 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV  A+SGGVDS+V A LLKR+G+DV+GV   + N  +  +    C   +D  DAR+VC 
Sbjct: 7   RVACALSGGVDSAVAALLLKRNGFDVVGV--YMVNWDQVEEGVNDCPRTKDEADARKVCV 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +V D+   + N V +    +Y  G T +  V CNR VKF  L     Q L  D 
Sbjct: 65  RLGIEFHVVDFTREYWNDVFMNMLENYRRGLTVVSDVMCNRIVKFDHLHRYAFQKLCVDA 124

Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGH+ R+ L  GD  +RR +     +    D  +DQ+YFL   TQ+QL    FP+G M
Sbjct: 125 VATGHFARTNL--GDFLERRSMTNVARLLMSADPLKDQTYFLSTLTQKQLRRSMFPVGSM 182

Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLN-GQI 252
            K  VR LA    L ++ +K +S  ICF+ + K FD    ++  I  + G I +++ G++
Sbjct: 183 TKPQVRQLAAGANLTEVLNKPESMGICFIGKRKSFDSF--LDQYIEPVSGLIRNVDTGRV 240

Query: 253 LGRHNGIINYTIGQR-RGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLE----VHRIYLR 306
           +G H+GI ++T+G+R R     +  PL F V     +S+ +     SL          + 
Sbjct: 241 IGEHSGIHHFTLGKRIRLPPEVIQSPLGFFVASTDFASQTVWACEGSLHPLLFATEFVVS 300

Query: 307 EINWLGDG--LFEDAVVDGFKCFVKIRSSQDPVPVF---VQRNDDGVYVDFEKSEV-GVA 360
           E  W+ +   +  ++V+  F+C       Q   P F   + R ++G      K+ +   A
Sbjct: 301 EPEWIAESPLMKSESVLVDFRC-------QRTHPAFECVLSRLENGFLKVVPKNPIRAAA 353

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ CVFY SD      LG G I
Sbjct: 354 PGQTCVFYLSDE----CLGSGRI 372


>gi|222624284|gb|EEE58416.1| hypothetical protein OsJ_09614 [Oryza sativa Japonica Group]
          Length = 410

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 156/327 (47%), Gaps = 11/327 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ VC
Sbjct: 78  LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 137

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I+V   V    + + N V+    + Y +G TP P V CN  +KF   L     LG D 
Sbjct: 138 DKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        DD +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 198 IASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEV 257

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA +M L   D+ DSQ ICF+ + K+ + V+R      G+ LE +     G  LG H 
Sbjct: 258 RRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAE----TGDYLGTHR 313

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL +  G P +VV     ++ V V     SL+  R   R   +NW  + 
Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS 372

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV 341
              +      K F ++  SQ   P  +
Sbjct: 373 GPTNNEQLKCKLFFELIGSQQSTPAVI 399


>gi|224532386|ref|ZP_03673016.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
 gi|225548926|ref|ZP_03769903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 94a]
 gi|225550036|ref|ZP_03770997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 118a]
 gi|224512693|gb|EEF83064.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
 gi|225369495|gb|EEG98947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 118a]
 gi|225370529|gb|EEG99965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 94a]
          Length = 355

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|226320481|ref|ZP_03796047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 29805]
 gi|226234123|gb|EEH32838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 29805]
          Length = 355

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYIEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|170109855|ref|XP_001886134.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639064|gb|EDR03338.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 370

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 184/379 (48%), Gaps = 26/379 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL +  YD+  V ++ +++   S     C   +D  D +RVC  +++ 
Sbjct: 1   MSGGVDSSVAAFLLAQQDYDLSAVFMRNWDTGDESGTDKGCEWEKDWEDVQRVCKKLDLP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQLGADVLA 142
             + D  + + N V  P    + +G TP   V CNR +KF  LL    + T       +A
Sbjct: 61  CQMIDLSQEYWNRVFEPSLKQWESGVTPNTDVWCNREIKFGALLERLPAPTTSNKKPWIA 120

Query: 143 TGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           TGHY R       +    R    + RP D  +DQ+Y+L + +++ L    FP+G ++K  
Sbjct: 121 TGHYARKSWSTTPNSPHTRPRPKLLRPSDRGKDQTYYLSSISEEGLSRALFPIGHLQKSE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
           VR+LAR+  L  A++ DS  ICFV ++ K+ + +      N G  ++     ++G+ L +
Sbjct: 181 VRELARKHQLHTAERPDSVGICFVGEKAKFSNFLSSYIPPNPGPVVD----QVSGKTLMQ 236

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL- 311
           H G+  +T+G+   +   M E +FV   D+ S+ + V P    E L  + + + +  W+ 
Sbjct: 237 HAGLWTFTLGENARI-PGMKERMFVSSKDQLSNTIYVVPGSDHEDLYSNTLRVSDFTWIW 295

Query: 312 GDGLFED-AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
            D +  D +   GF+  +  R     VP  V++ + G + V  ++ E  V  GQ    Y 
Sbjct: 296 NDAIPPDLSTPQGFRVDLMHRYRMHSVPSTVRKAETGDLIVTADEPEKAVTPGQIAALYD 355

Query: 370 SDSNEARVLGGGIISGSKR 388
            D      LG G+I  + R
Sbjct: 356 GD----WCLGCGVIKSTSR 370


>gi|323309474|gb|EGA62685.1| Slm3p [Saccharomyces cerevisiae FostersO]
          Length = 417

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 191/396 (48%), Gaps = 36/396 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L     P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSXLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304
              GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++  ++   
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324

Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355
            R  N+   G  ED  ++ F+      ++ RS Q PV +    + R+ D   + +     
Sbjct: 325 XRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           +  +  GQ+C  Y  D    RVLG G IS    +D 
Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415


>gi|221217912|ref|ZP_03589379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 72a]
 gi|221192218|gb|EEE18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 72a]
          Length = 355

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLGKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|269114904|ref|YP_003302667.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma hominis]
 gi|268322529|emb|CAX37264.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma hominis ATCC 23114]
          Length = 370

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 32/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           RVV+ MSGGVDSSV   LL++ GYDV+G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   RVVLGMSGGVDSSVCGYLLQKQGYDVVGLFMRNWDSFLNNDILGNENITQNICPQEQDYL 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+ V   +N+  Y  D+ + +   V       Y  G TP P + CN+ +KF        
Sbjct: 64  DAKAVASQLNIQLYRIDFVKEYWENVFNYLIDEYKKGRTPNPDIFCNKFIKFKAFSDYAF 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++L AD +A GHY  +      DG+    + R  D  +DQSYFL   +  QL  + FPL 
Sbjct: 124 KELKADYIAMGHYANAI-----DGE----LFRAQDDNKDQSYFLAQLSPDQLKKVIFPLA 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ K  VR++A+++ L  A K DS  ICF+ +  +   ++  N   A  G+I+ + +G++
Sbjct: 175 NITKPEVREIAKQLNLSTAMKKDSTGICFIGERHFTKFLE--NYIPAQPGNIIDIFSGKV 232

Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +G+H G + YTIGQR+GL +   E P FVV  + +   + V   + ++    YL     +
Sbjct: 233 VGKHIGAMYYTIGQRKGLNLGGYEKPYFVVGHNLSKKEIYVTNDDHID----YLMSNKLI 288

Query: 312 GDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
                + +    F     K R  Q  + + ++  D + + V +  +E  V  GQ  V Y 
Sbjct: 289 ATNFNQISKEFNFANLTAKFRYRQKDIKITLKILDGNKIEVCYPNTE-AVTPGQQVVIY- 346

Query: 370 SDSNEARVLGGGII 383
            D N  +V+GG II
Sbjct: 347 -DGN--KVVGGAII 357


>gi|320168110|gb|EFW45009.1| tRNA methyl transferase [Capsaspora owczarzaki ATCC 30864]
          Length = 647

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 169/333 (50%), Gaps = 26/333 (7%)

Query: 8   RLNSLDLDKNPKDM----------RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           RL+S DL++ P+            RV V +SGGVDS+V A LLKR G DVIGV ++ ++ 
Sbjct: 189 RLDSRDLEQIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 248

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
              +   G C   QD+ DA   C  + +     ++ + + N V   F   Y  G TP P 
Sbjct: 249 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 305

Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQ 173
           + CNR +KF  LL+V +   GA  LATGHY    RS    G     + I     D  +DQ
Sbjct: 306 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAH--DKAKDQ 363

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV 232
           +YFL A + + L    FPL  ++K  V+ +A E+GL +++ K +S  ICFV + + FD  
Sbjct: 364 TYFLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGK-RRFD-- 420

Query: 233 KRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
           + I+  IA +   + L +G I+G+H G   YT+GQ RGL     +   VV  D   + VI
Sbjct: 421 RFISNYIAPQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVI 479

Query: 292 VGPRESLE-VHRIYLREINWLGDGLFEDAVVDG 323
           V    ++   ++I+   +N  G       +VD 
Sbjct: 480 VTKASAISRAYKIFGDTVNKSGTTAVPAKLVDA 512


>gi|195941501|ref|ZP_03086883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 80a]
          Length = 355

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRRDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|238809910|dbj|BAH69700.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 382

 Score =  152 bits (385), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 178/380 (46%), Gaps = 31/380 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69
           N    +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S   +   G+       C  
Sbjct: 10  NMHKKKVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQ 69

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            QD  DA  V + + +  +  D+ + + + V   F   Y  G TP P + CN+ +KF   
Sbjct: 70  EQDYQDALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAF 129

Query: 130 LSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L     +L AD +A GHY + +     +GK    + R  D  +DQ+YFL   T QQL  +
Sbjct: 130 LKYAFEKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKV 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
             PL D  KE +R +A+++ L  A K DS  ICF+ +  +   ++  N   A +G I+ +
Sbjct: 181 LMPLADYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQ--NYIPAQKGKILDI 238

Query: 249 -NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
              ++LG H+G   YTIGQR+GL +    E  +V   D  ++ +   P         YL 
Sbjct: 239 KTKEVLGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPS----YLE 294

Query: 307 EINWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
               +   L       +  K   K R  Q  + V V+   ++ + V +      V  GQ 
Sbjct: 295 SNMLIASNLCLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPGQQ 354

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D    + LGG II 
Sbjct: 355 VVLYDQD----KCLGGAIIE 370


>gi|237716742|ref|ZP_04547223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|229442725|gb|EEO48516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
          Length = 368

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 167/384 (43%), Gaps = 73/384 (19%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG DSSV A  L   GY+VIGVT + Y      +  GS    + + DAR + + + + 
Sbjct: 1   MSGGTDSSVAAMRLLEAGYEVIGVTFRFY------ELNGST---EYLEDARNLAERLGIR 51

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G   +ATGHY
Sbjct: 52  HITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIATGHY 111

Query: 147 -----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                +    Y+              D ++DQ++FL+   Q  L  +  P+GD+ K   R
Sbjct: 112 AQNIQLNETFYI----------TYAADSDKDQTFFLWGLKQDILNRMLLPMGDITKAEAR 161

Query: 202 DLAREMGL-DIADKSDSQDICF-------------VQQGK-------------------- 227
             A E G   +A K DS  +CF             V+ G+                    
Sbjct: 162 AWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKDWLVRNGQMSVSNSEASINNSQTSGSDK 221

Query: 228 --YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
             + D ++R        G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +D 
Sbjct: 222 QTWSDRIRR--------GRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEIDP 273

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRN 344
             + V++    SLE   ++L++ N +     ++  +      VKIR   Q+        +
Sbjct: 274 EKNEVMLASLSSLEKTEMWLKDWNLVN----QERTLGRSDIIVKIRYRKQENYGTITVTS 329

Query: 345 DDGVYVDFEKSEVGVASGQACVFY 368
           D  ++V   +    +A GQA  FY
Sbjct: 330 DHLLHVQLHEPLTAIAPGQAAAFY 353


>gi|262341313|ref|YP_003284168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272650|gb|ACY40558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 398

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 189/398 (47%), Gaps = 59/398 (14%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DSSV A +LK+ GY+VIG+ +  +    +   K +    +D  DA  V   +N+   V +
Sbjct: 15  DSSVAALILKKKGYEVIGLFMHNWEEEDSVFNKCTTWK-EDKIDAMLVAQQLNIPFQVIE 73

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL 151
            ++ ++  VI      Y +G+TP P + CNR +KF+  L     LGAD++ATGHY+    
Sbjct: 74  MKKEYKKYVIDYMFHEYESGKTPNPDILCNREIKFNIFLKKAIDLGADLIATGHYVNKEK 133

Query: 152 YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
            + +     R++    DL +DQSYFL   TQ QL    FPLG + K  VR +A + GL  
Sbjct: 134 IIKNKKIIYRLLIGK-DLNKDQSYFLCQLTQYQLGKTLFPLGLLTKNQVRKIAEKNGLRN 192

Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN---------------------- 249
           A K +SQ +CFV + K  + +++    I  +G++V +N                      
Sbjct: 193 AHKKESQGLCFVGKIKLSEFLQK--KIIPKKGEVVCINSDALVYKENQFPFPSSKEEELL 250

Query: 250 ------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG--- 293
                       G+I+G H G   +T GQR+G+ +    + LFV+  D   + V  G   
Sbjct: 251 FLSRKKKYKKSDGKIIGYHKGAHCFTKGQRKGIALGGYQKALFVIETDVKENIVYTGIGK 310

Query: 294 --P---RESLEVHRIYLREINWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDD 346
             P   R+SL +     + I+W+ + L   ++ +G K   F +IR  Q      + +   
Sbjct: 311 KHPGLYRKSLFIQE---KNIHWIREDL---SLKEGEKMDVFCRIRYRQSLQKSKLYKIKK 364

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           G++++FE  +  +  GQ   +Y        ++G G+IS
Sbjct: 365 GMFIEFETMQCAITEGQFAAWYIGKE----LVGSGVIS 398


>gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 497

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 169/369 (45%), Gaps = 13/369 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ 
Sbjct: 80  KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 139

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   +     +  
Sbjct: 140 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 199

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + +GHY R      D      ++    D+ +DQ+YFL   +Q QL  L FPLG +KK+
Sbjct: 200 DYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKD 259

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
            VR LA +  L   D+ DSQ ICF+ + K+ D V R      GI LE +    +G  LG 
Sbjct: 260 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAE----SGDFLGN 315

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314
           H G   YTIGQR+GL +  G P +VV  D  ++ V V     S++  R   R  +   + 
Sbjct: 316 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 374

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 V   +C V+           ++ + D   V  ++ + G+A+GQ   FY   +  
Sbjct: 375 GKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTT-- 432

Query: 375 ARVLGGGII 383
              +G G+I
Sbjct: 433 --CIGSGVI 439


>gi|312149442|gb|ADQ29513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi N40]
          Length = 355

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 188/370 (50%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+      
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAT 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ D 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|221195808|ref|ZP_03568861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium rimae ATCC 49626]
 gi|221184282|gb|EEE16676.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium rimae ATCC 49626]
          Length = 389

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 181/389 (46%), Gaps = 45/389 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V + MSGGVDS++ AALL   G+DV  V ++ ++          C    D+ DA RV  
Sbjct: 7   KVYLGMSGGVDSALSAALLLEQGFDVHAVYMRNWSKDLPGFH---CPWADDLADAERVAV 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ +   V+D E+ ++  V+     SYA G TP P V CN+TVKF          GAD +
Sbjct: 64  SLGIDLAVWDCEKEYKETVVDYLLDSYAHGYTPNPDVMCNQTVKFGTFAKRAFSEGADYI 123

Query: 142 ATGHYIR-----SRLYVGDD------------GKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           ATGHY R          GDD            G     + R  D  +DQ+YFL+    + 
Sbjct: 124 ATGHYARLASGEKNACGGDDANNTTGMAGAMHGSGTSCLMRAADEHKDQTYFLWRVPSEI 183

Query: 185 LCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGI 239
                FP+GD+  K  VR +  + GL I +K DS  ICF+     +    D  +R     
Sbjct: 184 FDRTIFPIGDIPTKAEVRAMCADRGLGIENKPDSDGICFIGPVGLRTFLLDAFERKT--- 240

Query: 240 ALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---R 295
              GDI+   +G+ LG H+G   +TIGQR+GL V  G   +VV  D N++ V V      
Sbjct: 241 ---GDIIEWESGKKLGEHDGAFLFTIGQRKGLSVGGGPAHYVVATDTNTNTVYVTSDPLS 297

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEK 354
            +L    + + + +W+   +  D         V+ R + +  P  + + +   + + +E 
Sbjct: 298 AALWTKTMDIVDTHWISGCVPADGAYT-----VRTRHTGELRPCMLTKVSATTMRITYEV 352

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
               VA GQ+ VFY    +    +GGGII
Sbjct: 353 PVRTVAPGQSAVFY----DGLVCIGGGII 377


>gi|216264880|ref|ZP_03436872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 156a]
 gi|215981353|gb|EEC22160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 156a]
          Length = 355

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 189/370 (51%), Gaps = 27/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF      +  Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G HN
Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ + 
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINN- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +   
Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341

Query: 374 EARVLGGGII 383
               LGG  I
Sbjct: 342 -TECLGGAKI 350


>gi|308189959|ref|YP_003922890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma fermentans JER]
 gi|319777241|ref|YP_004136892.1| tRNA-specific 2-thiouridylase mnma [Mycoplasma fermentans M64]
 gi|307624701|gb|ADN69006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma fermentans JER]
 gi|318038316|gb|ADV34515.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma fermentans M64]
          Length = 372

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 177/375 (47%), Gaps = 31/375 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S   +   G+       C   QD  
Sbjct: 5   KVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQEQDYQ 64

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA  V + + +  +  D+ + + + V   F   Y  G TP P + CN+ +KF   L    
Sbjct: 65  DALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAFLKYAF 124

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L AD +A GHY + +     +GK    + R  D  +DQ+YFL   T QQL  +  PL 
Sbjct: 125 EKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKVLMPLA 175

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           D  KE +R +A+++ L  A K DS  ICF+ +  +   ++  N   A +G I+ +   ++
Sbjct: 176 DYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQ--NYIPAQKGKILDIKTKEV 233

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           LG H+G   YTIGQR+GL +    E  +V   D  ++ +   P         YL     +
Sbjct: 234 LGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPS----YLESNMLI 289

Query: 312 GDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
              L       +  K   K R  Q  + V V+   ++ + V +      V  GQ  V Y 
Sbjct: 290 ASNLCLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPGQQVVLYD 349

Query: 370 SDSNEARVLGGGIIS 384
            D    + LGG II 
Sbjct: 350 QD----KCLGGAIIE 360


>gi|156088637|ref|XP_001611725.1| tRNA methyl transferase family protein [Babesia bovis]
 gi|154798979|gb|EDO08157.1| tRNA methyl transferase family protein [Babesia bovis]
          Length = 665

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 196/409 (47%), Gaps = 37/409 (9%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +  T+L +  L       RV   +SGGVDS+V   LLK  G+D+    L++++       
Sbjct: 270 ASGTQLGNPSLPTVLGQSRVACLVSGGVDSAVALWLLKSRGFDIEAFYLKVWSVENGDL- 328

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
            G C    D+  A  V   +NV  +V  +++ +   V+ PF +  + GETP P V CN  
Sbjct: 329 -GDCQWSADLEHAMGVTKLLNVPLHVVPFQDVYHQRVLDPFVAGASLGETPNPDVCCNEF 387

Query: 124 VKFSDLLSVTRQLGADVLATGHY--IRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFAT 180
           +KF   L    + G   +A+GHY  I   L  G   +  R+ +CR  DL +DQ+YFL   
Sbjct: 388 IKFGAFLDYAVRWGFSHIASGHYASIIEDLVPGTSTRIARLRLCR--DLRKDQTYFLSRL 445

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +Q QL  + FPL  + K  VR +AR +G    D+ +S  +CF+ +    DV   ++  + 
Sbjct: 446 SQSQLRRVMFPLSQLYKNEVRTIARTLGFSNYDRKESMGLCFLGK---VDVKSFLSHRLG 502

Query: 241 -LEGDIV-HLNGQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIV 292
            + G IV H  G  +GRH+G+ ++TIGQR G+   +       +  +VV  D +++ + V
Sbjct: 503 EVPGPIVDHDTGNCIGRHHGLFHFTIGQREGIARYLNSVRDTNQSRYVVAKDIDTNTLYV 562

Query: 293 GPRESLEVH--------RIYLREINW-LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
             R   + +        R  + +I W + D  F+  + D     +K+R S       +  
Sbjct: 563 STRYHTKCYTEPGSVRRRFRISDIRWNVPD--FKRFITDPNSLSMKVRHSPTLCRGDISF 620

Query: 344 ND----DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           +D     G  V  EK+++G+A+GQ  V Y+        LG G I   +R
Sbjct: 621 DDLDTASGASVHLEKADIGLATGQYAVIYSG----LNCLGAGKIVAKQR 665


>gi|320168295|gb|EFW45194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capsaspora owczarzaki ATCC 30864]
          Length = 554

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 168/333 (50%), Gaps = 26/333 (7%)

Query: 8   RLNSLDLDKNPKDM----------RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           RL+S DL+  P+            RV V +SGGVDS+V A LLKR G DVIGV ++ ++ 
Sbjct: 96  RLDSRDLEPIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 155

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
              +   G C   QD+ DA   C  + +     ++ + + N V   F   Y  G TP P 
Sbjct: 156 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 212

Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQ 173
           + CNR +KF  LL+V +   GA  LATGHY    RS    G     + I     D  +DQ
Sbjct: 213 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAH--DKAKDQ 270

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV 232
           +YFL A + + L    FPL  ++K  V+ +A E+GL +++ K +S  ICFV + + FD  
Sbjct: 271 TYFLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGK-RRFD-- 327

Query: 233 KRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
           + I+  IA +   + L +G I+G+H G   YT+GQ RGL     +   VV  D   + VI
Sbjct: 328 RFISNYIAPQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVI 386

Query: 292 VGPRESLE-VHRIYLREINWLGDGLFEDAVVDG 323
           V    ++   ++I+   +N  G       +VD 
Sbjct: 387 VTKASAISRAYKIFGDTVNKSGTTAVPAKLVDA 419


>gi|257094501|ref|YP_003168142.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047025|gb|ACV36213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 366

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 186/383 (48%), Gaps = 36/383 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   VVV +SGGVDSSV A LLK  G+ V+G+ ++ +      +    C + QD+ D   
Sbjct: 3   KGKTVVVGLSGGVDSSVAALLLKEQGWHVVGLFMKNWEDDDTDEY---CSSRQDLVDVLS 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +   V ++  ++R  V   F + YAAG TP P V CN  +KFS  L    ++GA
Sbjct: 60  VADRIGIDVEVVNFASQYRERVFAHFLAEYAAGRTPNPDVLCNSEIKFSAFLEHALKIGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY   R + G        + +  D  +DQSYFL    QQQL    FPL  + K 
Sbjct: 120 ERIATGHYAGVREFQG-----AWQLLKAEDGTKDQSYFLHRLNQQQLAKTLFPLAGLYKR 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A   GL +A K DS  ICF+ +  + + + R       +G+I  L + ++LG H+
Sbjct: 175 EVRKMAAAAGLHLALKKDSTGICFIGERPFKEFLLRYLP--PKKGEIRGLDDDRLLGEHD 232

Query: 258 GIINYTIGQRRGL---GVAMG--------EPLFVVYLD--KNSSRVIVG-PRESLEVHRI 303
           G+  +TIGQR+GL   GV  G        +  FV   D   N   V+ G    +L   ++
Sbjct: 233 GVAYHTIGQRKGLHIGGVKGGKSGDSGDHDAWFVARKDIATNVLYVVQGHAHPALLADQL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASG 362
              +++W+      +     +    K R  Q      V+  D     + F + +  V  G
Sbjct: 293 TAGDLSWVAG----EPPHTHWVYTAKTRYRQADAACEVEHVDAHSCLISFAEPQWAVTPG 348

Query: 363 QACVFYTSDSNEARV-LGGGIIS 384
           Q+ V Y     E+RV LGGG+I+
Sbjct: 349 QSVVVY-----ESRVCLGGGVIA 366


>gi|321458097|gb|EFX69171.1| hypothetical protein DAPPUDRAFT_202999 [Daphnia pulex]
          Length = 409

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 191/398 (47%), Gaps = 27/398 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV  +SGGVDSSV A LLK+ GYDV+GV ++ ++ +      G C + +DV  A+R C 
Sbjct: 9   RVVCGVSGGVDSSVAALLLKKKGYDVVGVFMKNWDGK---DELGVCQSDKDVEVAQRTCK 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V       Y AG TP P + CN  +KF       ++ L AD 
Sbjct: 66  ILNIPFFEVNFVKEYWNHVFENLLQDYQAGLTPNPDILCNYHIKFDLFFDYAKEKLDADF 125

Query: 141 LATGHYIRSRL---YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY RS L    V  + +  +++    D  +DQ++FL    Q  L    FP+G + K
Sbjct: 126 VATGHYARSSLGINSVETETENTKLLTSRDDF-KDQTFFLSHIKQSSLKKTLFPIGGLLK 184

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253
             VR LA + GL+ ++++ +S  ICF+ +  + + +      N G  ++ D      + +
Sbjct: 185 SEVRKLASDNGLEHVSNRQNSTGICFIGRRNFQEFISEYVPNNPGPFIDVD----TDEEV 240

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI-NW 310
           G+H GI  +T+GQR  +G  + +P FV      +  + V  G        + +L    +W
Sbjct: 241 GQHLGIHMWTLGQRCRIGGCL-KPYFVASKQPETRTIFVASGTNHPALFSKAFLSSTPHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           +     E      F CF + + ++      +  +  G+ V  ++    +  GQ  VFY+ 
Sbjct: 300 IHSTPRELQENKTFDCFFRFQHTKPLTAAQIAVHQSGLIVTLDRPTRALTPGQYAVFYSG 359

Query: 371 DSNEARVLGGGIISGSKRSD---AVEESLLSVIGDEFP 405
                  LG   I  +  +D    + E+ +S + D FP
Sbjct: 360 Q----ECLGCARIVQNLNNDWHNCMTETSISSMYDRFP 393


>gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis lyrata subsp. lyrata]
 gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 170/371 (45%), Gaps = 17/371 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ 
Sbjct: 83  KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 142

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   +     +  
Sbjct: 143 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 202

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + +GHY +      D      ++    D+ +DQ+YFL   +Q QL  L FPLG +KK+
Sbjct: 203 DYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLIFPLGCVKKD 262

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRIN--AGIALEGDIVHLNGQILGR 255
            VR LA +  L   D+ DSQ ICF+ + K+ D V   I    GI LE +     G  LG 
Sbjct: 263 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCAHIGEMEGIILEAE----TGDFLGN 318

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLG 312
           H G   YTIGQR+GL +  G P +VV  D  ++ V V     S++  R   R   + WL 
Sbjct: 319 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWLS 377

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   V   +C V+   S       ++ + D   V  ++ + G+A+GQ   FY   +
Sbjct: 378 GK--PSGNVRELRCKVRHGPSFYSCSFEMEADGDVAVVHLDEDDQGLAAGQFAAFYEGTT 435

Query: 373 NEARVLGGGII 383
                +G G+I
Sbjct: 436 ----CIGSGVI 442


>gi|321309601|ref|YP_004191930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801445|emb|CBY92091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma haemofelis str. Langford 1]
          Length = 368

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 194/378 (51%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A+SGGVDS++ A LLK+  +D+  V +Q ++S+  + +     C + +D+   + +
Sbjct: 6   KVVIALSGGVDSAISAFLLKQKNHDLHAVYMQNWDSQVNEENAEDSGCSSREDLKYVKEI 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
           C+ +N+   V+++   +   V  P+ +         P + CN  +KF  LL+ + +  G 
Sbjct: 66  CNKLNIPLTVYNFVPEYWEYVFEPYLNLVQNNLLSNPDILCNSKIKFGVLLNRIIQDFGP 125

Query: 139 DV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
           D+ LATGH+ R    +  DG+    +C   +  +DQ+YFL      QL  + FPL D++ 
Sbjct: 126 DIKLATGHWARV---INRDGRYMLAVCS--NPNKDQTYFLSRLAPDQLKYILFPLQDIQS 180

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           KE +R++A+++ L + ++ DS  ICF+ + KY D ++  N     EGD+V +  G+ILG 
Sbjct: 181 KEEIREIAKDLELSVWNRRDSTGICFIGKRKYSDFME--NFIDHEEGDLVDIETGKILGT 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES-----LEVHRIYLREINW 310
           H G   Y + QR GL +   E  + V        V+   RES     L     +  +I+W
Sbjct: 239 HKGSHLYALHQRSGLALKGYEERYYVCKKDPKKNVVYLCRESQIPLYLHTTSTFCSDIHW 298

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      +A   G + F+K R +   + V ++  ++G  ++  EK+ +  + GQ  VFY 
Sbjct: 299 IN-----EAPNVGEELFIKARHTPSFLKVKLRSLENGECHITHEKTHI-TSPGQYVVFYD 352

Query: 370 SDSNEARVLGGGIISGSK 387
            D N    LG GI    K
Sbjct: 353 LDRNIC--LGSGIYKDGK 368


>gi|294656411|ref|XP_458677.2| DEHA2D04818p [Debaryomyces hansenii CBS767]
 gi|199431453|emb|CAG86816.2| DEHA2D04818p [Debaryomyces hansenii]
          Length = 415

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 198/401 (49%), Gaps = 39/401 (9%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +++     N +  + N  D  ++VAMS GVDSSV AAL      +V G+ +       A+
Sbjct: 30  LMTNEVSTNYMQPEPNAND-EIIVAMSSGVDSSVCAALYAEKYKNVRGIYM-------AN 81

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             + + C   D  D +++C+ +N+     ++E+ + N V  P    Y  G TP P V CN
Sbjct: 82  WSQTAKCTESDWNDVKKICNDLNIPCERVNFEKEYWNEVFQPMVQMYEKGLTPNPDVGCN 141

Query: 122 RTVKFSDLLS-VTRQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           + VKF  ++  +T++   +    L TGHY R    +         + R     +DQSY+L
Sbjct: 142 KYVKFGKMIEHLTKKFSNNQKWWLVTGHYAR---IMKCQTSNEYNLLRGYYKSKDQSYYL 198

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
               ++ L  +  P+G + K +VR+LA+   L  A K DSQ +CFV Q +  +    +N 
Sbjct: 199 ANIPKRVLSQVLMPIGHLTKPNVRELAKGYNLHTAKKPDSQGLCFVSQDEN-NFRNFLNE 257

Query: 238 GIALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYL-----DKNSSR 289
            IA   G+I+  +G+I G+H G+ + TIGQ+ G+ +  G+P +  + ++     D N   
Sbjct: 258 YIAPNPGNIITEDGKIWGQHQGLWHATIGQKSGISMPQGDPRYKGIWFISEKRYDTNELV 317

Query: 290 VIVG-PRESLEVHRIYLREINWLGDGLFEDAVVDGFKC-----FVKIRSSQDPVPV-FVQ 342
           ++ G   + L    + ++E +WL D +   A+ +  KC      V+ RS Q+P  +  ++
Sbjct: 318 IVKGNNNDRLFKKGLKVKEWSWLMDDI--SAISE--KCEEGNLSVQYRSLQEPEIINSIK 373

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +   V ++  K    +A GQ  V Y  +    RVLG GI+
Sbjct: 374 ISQSDVDIELVKKARAMAPGQNIVLYEGN----RVLGSGIL 410


>gi|269102223|ref|ZP_06154920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162121|gb|EEZ40617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 333

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 30/321 (9%)

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L 
Sbjct: 25  VCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLE 84

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +A GHY R       +  +   M R +D  +DQSYFL+  + +Q+    FP+G+++K
Sbjct: 85  ADYIAMGHYTRRTFPQAGEEPQ---MLRGLDNNKDQSYFLYTLSHEQIARSLFPVGELEK 141

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRH 256
             VR +A E GL  A K DS  ICF+ + K+ + + +     A  G+IV  + G ++G H
Sbjct: 142 PEVRRIAEEQGLVTAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIVTADEGTVIGEH 199

Query: 257 NGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIY 304
            G++ +T+GQR+GL       G    +P +VV  D   + ++V      PR  L+ + + 
Sbjct: 200 QGLMYHTLGQRKGLHIGGQKGGNGHEDPWYVVDKDVKRNELVVAQGHDHPR--LKSNGLI 257

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQ 363
             +++W+      + +     C VK R  Q  +P   +  +D+ + V F++ ++ V  GQ
Sbjct: 258 ASQLHWVD----REPIRQPVTCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 313

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      +GGGII 
Sbjct: 314 SAVFYNGEV----CMGGGIIE 330


>gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis thaliana]
 gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis thaliana]
          Length = 497

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 169/369 (45%), Gaps = 13/369 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ 
Sbjct: 80  KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 139

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   +     +  
Sbjct: 140 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 199

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + +GHY +      D      ++    D+ +DQ+YFL   +Q QL  L FPLG +KK+
Sbjct: 200 DYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKD 259

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
            VR LA +  L   D+ DSQ ICF+ + K+ D V R      GI LE +    +G  LG 
Sbjct: 260 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAE----SGDFLGN 315

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314
           H G   YTIGQR+GL +  G P +VV  D  ++ V V     S++  R   R  +   + 
Sbjct: 316 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 374

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 V   +C V+           ++ + D   V  ++ + G+A+GQ   FY   +  
Sbjct: 375 GKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTT-- 432

Query: 375 ARVLGGGII 383
              +G G+I
Sbjct: 433 --CIGSGVI 439


>gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana]
 gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana]
          Length = 421

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 169/369 (45%), Gaps = 13/369 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ 
Sbjct: 4   KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   +     +  
Sbjct: 64  VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + +GHY +      D      ++    D+ +DQ+YFL   +Q QL  L FPLG +KK+
Sbjct: 124 DYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKD 183

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
            VR LA +  L   D+ DSQ ICF+ + K+ D V R      GI LE +    +G  LG 
Sbjct: 184 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAE----SGDFLGN 239

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314
           H G   YTIGQR+GL +  G P +VV  D  ++ V V     S++  R   R  +   + 
Sbjct: 240 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 V   +C V+           ++ + D   V  ++ + G+A+GQ   FY   +  
Sbjct: 299 GKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTT-- 356

Query: 375 ARVLGGGII 383
              +G G+I
Sbjct: 357 --CIGSGVI 363


>gi|50312295|ref|XP_456180.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645316|emb|CAG98888.1| KLLA0F24706p [Kluyveromyces lactis]
          Length = 415

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 195/391 (49%), Gaps = 41/391 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCD 81
           +VV MSGGVDSSV AAL      +V GV +Q +   ++  R +   C  ++  DA +V  
Sbjct: 32  IVVGMSGGVDSSVCAALFAAYP-NVHGVYMQNWGKDQSLTRPEEDPCYEKEWKDAEKVAK 90

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD- 139
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L+  +  + G + 
Sbjct: 91  HLNIPVEFVNFEKDYWLNVFAPMLEQYSMGYTPNPDIGCNQFVKFGKLMDHLDVKFGKNN 150

Query: 140 -VLATGHYIRSRLYVGDDGKRRR--IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             L  GHY  +R+   D G  R    + R +  ++DQSY+L   +   L  +  P+G + 
Sbjct: 151 YWLVMGHY--ARILRRDSGPERSEPHLMRGLYQQKDQSYYLSQVSVPSLNQMILPIGHLT 208

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALE-GDIV---HLN 249
           K  VR++A+E+ L  A K DSQ ICFV   Q GK+ + +K     + +E G+I+    L 
Sbjct: 209 KPEVREMAKEVDLHTATKPDSQGICFVNNSQHGKFKNFLKEY---LPMELGNIITIDELT 265

Query: 250 GQ--ILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYLDKNSSR----VIVGPRES---- 297
           G+  + G+H GI +YTIGQ+ G+ +  G+P +    Y+ + + R    VIV  +++    
Sbjct: 266 GKKTVWGKHPGIWSYTIGQKIGISLPQGDPRYQGAWYVSEKNKRTREIVIVRGKDNNNLF 325

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDF 352
              + V    +   N L      +A ++     ++ RS Q PV V      N +   +  
Sbjct: 326 KDVVTVKHFKILSKNPLSKEELNEA-INKETLHMQFRSLQTPVKVTSVEWINSNEFSLKL 384

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           E+ E  +A GQ C  Y ++    RV+G GII
Sbjct: 385 ERKERAMAPGQYCCLYVNE----RVIGSGII 411


>gi|224534479|ref|ZP_03675055.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
 gi|224514156|gb|EEF84474.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
          Length = 355

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 189/372 (50%), Gaps = 31/372 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY +V    L+++   + S   GSC   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYRIISKGYTNVKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138
           C+  NV + + ++++ + N V+        +G TP P + CN+ +KF      + +Q   
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIKELKSGNTPSPDIFCNQRIKFGAFFEKINKQY-- 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ TGHY + +        ++  + +  D  +DQSYFL   +Q Q+  L FPLG + K 
Sbjct: 118 DLVVTGHYAKIQ-----KKDKKIFLKQAKDKIKDQSYFLSHLSQNQMSKLYFPLGTLLKS 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A+ + L   ++ DSQ ICF+ + KY + +K  + G   +G+I+    G+I+G H+
Sbjct: 173 EVRQIAKSINLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGRIIGIHD 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE--SLEVHRIYL-REINWLGDG 314
           G   +T+GQRRG+ ++ G P FV+  D   + + +   E  S +  R +L  EI+W+   
Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWINGT 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  + FK  +KIR  +         +  N   +Y++  K + G++ GQ  +FY + 
Sbjct: 290 PLN---FENFK--IKIRHGEKKYSCKLKLITNNLIEIYLN--KKDCGISPGQFAIFYKN- 341

Query: 372 SNEARVLGGGII 383
                 LGG  I
Sbjct: 342 ---TECLGGAKI 350


>gi|71030526|ref|XP_764905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Theileria parva strain Muguga]
 gi|68351861|gb|EAN32622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Theileria parva]
          Length = 693

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 183/391 (46%), Gaps = 49/391 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGGVDSS+   L+K   +DV    L++      S   G  CA  D+  A +VC+
Sbjct: 298 RVAVLVSGGVDSSLALWLMKSRAFDVHAFYLKV---NDLSNGPG-LCASNDISYAMQVCN 353

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V+ +V  + + +   ++      Y  GE P P V CN  +KF + L +    G D +
Sbjct: 354 ILGVTLHVLPFSKAYSEHILSGVLDDYRKGEVPNPDVLCNSRIKFGEFLRMAIDWGFDYV 413

Query: 142 ATGHY------------------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           A+GHY                  +     +    K +R +C   D  +DQ+YFL   TQ 
Sbjct: 414 ASGHYATLCDDFFTKEQIKSPSSLNGSTSINGYYKIKR-LCLSNDTLKDQTYFLSRLTQN 472

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LE 242
           Q+  L FP+G + K  VR+ A+ +GL   DK DS  +CF++     D+ + +   +   +
Sbjct: 473 QMSKLIFPIGHLTKSQVREFAKTVGLPTFDKKDSFGLCFLED---LDISQYLTKSLGESQ 529

Query: 243 GDIV-HLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSRVIV--- 292
           G IV +   +++G HNG+ N+TIGQ++ +   +        P +VV  D  ++ + V   
Sbjct: 530 GPIVEYETNKVIGTHNGLYNFTIGQKKTINSFLNPKHVGSTPKYVVKKDIATNTLYVSSN 589

Query: 293 ----------GPRESLEVHRIYLREINW--LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340
                     G R S +V  ++    ++  L + +  +   D FK  VK+R + +     
Sbjct: 590 YNDDFYTNPKGIRSSFKVKDMFWNVPDYKELINKIQSEGSDDNFKFKVKLRHTPNYSQCA 649

Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +  + D   V  +  + G+++GQ CVFY  +
Sbjct: 650 INFDGDEATVFLKHPDTGISTGQYCVFYADN 680


>gi|309807698|ref|ZP_07701637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169072|gb|EFO71151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 01V1-a]
          Length = 301

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 150/296 (50%), Gaps = 22/296 (7%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           F S Y  G TP P + CN+ +KF   L    +L AD +A GHY ++   V D      +M
Sbjct: 13  FLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADYIAMGHYAKT---VTDKNGVVHMM 69

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
            RP D  +DQ+YFL   TQ+QL    FPL D+ K  VR +A + GL  A K DS  ICF+
Sbjct: 70  -RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQVRMIAEQAGLATAKKKDSTGICFI 128

Query: 224 QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE----PLF 279
            +  + + +       A+ G+IV  +G+I+G+H+G++ YTIGQR GLG+   +    P F
Sbjct: 129 GERNFKNFLSEFLP--AMGGNIVTADGRIVGKHSGLMYYTIGQRSGLGLGGNQSSCAPWF 186

Query: 280 VVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           VV  +   + +IV      + L    +   E+++       D  +    C  K R  Q  
Sbjct: 187 VVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTGLPSNDTTI---HCTAKFRYRQPD 243

Query: 337 VPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
           V V +  N  ++ V+V+F++    V  GQA VFY  +      LGG II  + R +
Sbjct: 244 VAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE----ECLGGAIIDKAYRGN 295


>gi|66805429|ref|XP_636447.1| tRNA -methyltransferase [Dictyostelium discoideum AX4]
 gi|74852396|sp|Q54I63|MTU1_DICDI RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|60464825|gb|EAL62944.1| tRNA -methyltransferase [Dictyostelium discoideum AX4]
          Length = 451

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 190/394 (48%), Gaps = 37/394 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  +V + MSGGVDS++ A LLK  G+DV GV ++ ++  + +   G C   +D  DA 
Sbjct: 62  PKKPKVCIGMSGGVDSTITAKLLKLQGFDVTGVFIKSWDEVEDT---GRCQGERDWKDAL 118

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136
              + +++  Y  D+ + + N V V F   Y  G TP P V CNR +KF       ++  
Sbjct: 119 EASNFLDIPMYKADFVKDYWNRVFVDFLKDYKNGLTPNPDVWCNREIKFDLFFDFAKENF 178

Query: 137 GADVLATGHYIRSRLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           G D +ATGHY  S LY     VGD+      + R +D  +DQ++FL  T  ++L    FP
Sbjct: 179 GVDYIATGHY--SNLYYGEENVGDNNNNNLQLHRAIDKNKDQTFFLCMTKGERLKQAIFP 236

Query: 192 LGDMKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDI--V 246
           +G   KE++   A+ +     I  K  S+ ICF+ +    D + +    + L+ GD   +
Sbjct: 237 IGGFTKENIVSFAKTIPNFSKITSKKSSRGICFIGKRPLPDFLSQY---MTLKPGDFFDI 293

Query: 247 HLNGQILG-RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
             N  I G +H G + YT+GQ+  +  ++ E  F+V  D   + V V P    +   +Y 
Sbjct: 294 STNSFIKGKKHKGSVCYTMGQKANID-SLSERYFIVRSDIERNIVYVCPESQFDQFSLYY 352

Query: 306 ----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----DG--VY-VDFE 353
                  NW+ +   E     GFK     R   D V + ++        DG  +Y V+ +
Sbjct: 353 EFNTHSFNWINEIPTEVKSEQGFKGRGICRHRGDVVNLTIKDTGKTSPIDGSVIYSVNLD 412

Query: 354 KSEVGVASGQA-CVFYTSDSNEARVLGGGIISGS 386
           +    VASGQ  C+F   D N  R  GGG+I+ S
Sbjct: 413 QPLRSVASGQILCLF---DRNTDRCFGGGVINSS 443


>gi|330803532|ref|XP_003289759.1| hypothetical protein DICPUDRAFT_154197 [Dictyostelium purpureum]
 gi|325080152|gb|EGC33720.1| hypothetical protein DICPUDRAFT_154197 [Dictyostelium purpureum]
          Length = 428

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 187/384 (48%), Gaps = 27/384 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           R  S+DL   P   +V V MSGGVDS++ A +LK  G+DV GV ++ ++  + S   G C
Sbjct: 48  RFPSMDLI--PTKPKVAVGMSGGVDSTITAKILKHQGFDVTGVFIKSWDDIEES---GRC 102

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              +D  DA  V   +++  Y  D+ + + N V   F   Y +G TP P V CNR +KF 
Sbjct: 103 QGERDYKDAIAVAKYLDIPMYQADFVKDYWNRVFTGFLKDYQSGITPNPDVWCNREIKFD 162

Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             +   ++  G D +ATGHY  S LY   +   +  + R +D  +DQ+YFL  T  + L 
Sbjct: 163 LFIDFAKENFGVDYIATGHY--SNLYYDKNDPNKIELYRSVDKSKDQTYFLCMTKTKGLA 220

Query: 187 DLRFPLGDMKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEG 243
           +  FP+GD  K+ + D A+ +    ++  K  S+ ICF+ +    D + + I+       
Sbjct: 221 NSIFPIGDFTKDKIIDFAKTIPDFTNVLSKKSSRGICFIGKKSLPDFLSQYIDLKPGFYY 280

Query: 244 DIVHLNGQILG--RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR----ES 297
           DI    G I+   +H G I YTIGQ+  +  +  E  +VV  D   + V V P     + 
Sbjct: 281 DIS--KGFIIPHQKHQGSICYTIGQKAKIH-SSSEKYYVVSTDIKKNIVNVCPESLVSKY 337

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDF 352
           L   +  +  +NW+ +   E    +GFK   + +   + V + ++R DD      VY   
Sbjct: 338 LNFSQFQIHGLNWINEIPKEVFSEEGFKARGQYKHRGEIVELIMKRTDDLYNNSNVYNIQ 397

Query: 353 EKSEV--GVASGQACVFYTSDSNE 374
             SE    +ASGQ    +  D+++
Sbjct: 398 ITSEPIRNLASGQILCLFDKDTDK 421


>gi|124516570|gb|EAY58078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1
           [Leptospirillum rubarum]
          Length = 361

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 180/373 (48%), Gaps = 31/373 (8%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----------SCCAGQDVY 74
           + +SGGVDS+V A LLK  G+DV G  +++++   +  R G          +CC    V 
Sbjct: 1   MGLSGGVDSTVAALLLKEAGFDVYGAIVEIWSENSSGGRSGEEREKPWFERACCHLPMV- 59

Query: 75  DARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             + +C+  +++ +   D ++ F+  ++  F   Y  G TP PC DCN  +K   L+   
Sbjct: 60  --KFLCEEYLHIPYVQIDQKQNFQEKIVDVFREGYHNGVTPNPCTDCNAEIKIKTLIDWA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            Q     +ATGHY ++   V +   R   + + +D ++DQSYFL    +  L  + FPLG
Sbjct: 118 EQQKISYVATGHYAKNHYSVQN---RLWGIAQALDRKKDQSYFLSRVPEHVLRKVLFPLG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQ 251
              K+ VR+ AR   + + +  ++ + CF+        +KR    +   G+  +  + G+
Sbjct: 175 HWTKDKVREFARSKKIPVEEMVENMEACFLSAKNVTSFLKR-EEEVHSSGNWKVTDMKGE 233

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
            +G     I  T GQR+G+GVA  E ++V  +D ++  VI+G ++ +      +R+   L
Sbjct: 234 KIGEIPTGIGLTKGQRKGIGVANAERMYVKKVDVHNKVVIMGSKKDILNRNFRIRDP--L 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G  LF+  +      +VK RS  + VP   + N   +  +      GV  GQ   FY   
Sbjct: 292 GP-LFQKKIKGNL--YVKFRSVMEAVPCIEKGN---LRFELLNENDGVTPGQIAAFY--- 342

Query: 372 SNEARVLGGGIIS 384
            +E  VLG GI+ 
Sbjct: 343 DDEQMVLGSGILE 355


>gi|66472552|ref|NP_001018435.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Danio rerio]
 gi|82192768|sp|Q503J2|MTU1_DANRE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|63101232|gb|AAH95308.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Danio
           rerio]
 gi|182891436|gb|AAI64518.1| Trmu protein [Danio rerio]
          Length = 416

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 189/397 (47%), Gaps = 54/397 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV AMSGGVDSSV A LLKR GY V GV ++ ++S+   + KG C + +D  DA +VC 
Sbjct: 6   HVVCAMSGGVDSSVSALLLKRMGYHVTGVFMKNWDSQ---EEKGLCSSDRDCEDAYKVCK 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + + V       Y  G TP P + CN+ +KF          LGAD 
Sbjct: 63  MLDIPFHEVSYVKEYWHEVFSNLLWEYERGRTPNPDIICNKHIKFKHFYQYAVNTLGADA 122

Query: 141 LATGHYIRS--------RLYVGDDGK---RRRIMCRP-------MDLERDQSYFLFATTQ 182
           +ATGHY R+        +  + +  K   R R   R         DL +DQ++FL   +Q
Sbjct: 123 MATGHYARTSQEDEEVFQQKLTEAPKSLFRDRFEIRKPVRLYQGADLLKDQTFFLSQISQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPL  + K  V+ +A E G   +  K +S  ICF+ +  + + +  +      
Sbjct: 183 DALRHTLFPLAGLTKGYVKKIAAEAGFQHVLKKKESMGICFIGKRDFENFI--LEYLEPR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP------ 294
            G+ V + +GQI+G+H G    T+GQR  +G    +  FVV  D  ++ V V P      
Sbjct: 241 PGNFVSIEDGQIMGKHKGWFTLTLGQRARIG-GRADAWFVVDKDVTTADVFVCPSTFHPA 299

Query: 295 --RESLEVHRIYLREINWLGD----GLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDG 347
             R++L+  R +     W+ +     L    ++D   CF    +++ P+ P  V  N DG
Sbjct: 300 LFRDTLQTDRFH-----WIAEEPPAELVHTQMMDCHFCF----NNRMPLTPCTVTLNLDG 350

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            V+V  ++   G+A+GQ  V Y         LG G I
Sbjct: 351 SVWVMVKEPMRGMATGQFAVLYKGHE----CLGSGKI 383


>gi|260642609|ref|ZP_05416575.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260621349|gb|EEX44220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 365

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 181/388 (46%), Gaps = 45/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V G+T + Y    ++         + + DAR 
Sbjct: 4   ENRRVLLGMSGGTDSSVAAMRLLEGGYEVTGITFRFYELNDST---------EYLEDARS 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  + FR  +I  F   Y  G TP+PC  CN  +K+  L  V  ++G 
Sbjct: 55  LAERLGIRHITYDARDVFRKQIIEYFVQEYMEGRTPVPCTLCNNCLKWPLLAKVADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY++     G        +    D ++DQS+FL+   Q  L  +  P+G++ K 
Sbjct: 115 FYIATGHYVQKVELEGT-----YYITHAADPDKDQSFFLWGLKQDILRRILLPMGNITKV 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINA--------------GIALEG 243
             R  A E G   +A K DS  +CF     Y   +K   A               +   G
Sbjct: 170 EARVWAAERGFQKVATKKDSIGVCFCPM-DYRSFLKEWLARNGQLRSENVSCWSEMVRRG 228

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFV--VYLDKNSSRVIVGPRESLEVH 301
             V   G  +G H G   YTIGQRRGLG+ +  P+FV  +Y +KN   V++    +LE  
Sbjct: 229 RFVDEKGNFIGWHEGYPFYTIGQRRGLGIHLNRPVFVKEIYPEKNE--VVLSSLSALEKT 286

Query: 302 RIYLREINWLGDGLFEDAVVDGFK-CFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
            + L++ N     L     + G+    VKIR   Q+         D+ +++   +    +
Sbjct: 287 EMQLKDWN-----LVNPQKILGYNDVIVKIRYRKQENHCTVTVTPDNLLHIQLHEPLTAI 341

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSK 387
           A+GQA  FY     +  +LGGGII  ++
Sbjct: 342 AAGQAAAFY----RDGLLLGGGIIVNAR 365


>gi|156551968|ref|XP_001600621.1| PREDICTED: similar to ENSANGP00000015341 [Nasonia vitripennis]
          Length = 395

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 181/378 (47%), Gaps = 26/378 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDS+V A LLK  G+ V G+ ++ ++        G C A +D  DA+ +C+
Sbjct: 4   KVIVGISGGVDSAVAALLLKSKGFKVTGIFMRNWD---IVNELGECQAEKDYEDAKWICN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + +  +  ++ + + N V      +Y  G+TP P + CN+ +KF+      R +LGAD 
Sbjct: 61  RLKIPLHDVNFVKDYWNEVFSYLLENYEVGKTPNPDIQCNKKIKFNKFFHYARTELGADA 120

Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGHY R+        Y  D       + R  D  +DQ++FL    Q  L    FPLG+
Sbjct: 121 IATGHYARNSFGSFLEDYKPDTNAS---LLRAKDSLKDQTFFLSQIPQLSLRRTMFPLGE 177

Query: 195 MKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQI 252
             K+ V+ +A+E  L+I A+K +S  ICF+   ++ D +V+ +        D     G I
Sbjct: 178 YLKKDVKKMAKEANLEILANKKESMGICFIGSRQFQDFIVEYVEEKPGYFIDFK--TGNI 235

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G+H GI  +T+GQ   +G  +  P FV   D +++ + V       +L    +    ++
Sbjct: 236 VGKHTGIHQWTLGQGCKIG-GLPSPYFVFRKDTDNNNIYVVAGSSHPALFSEFLVASNVH 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      + C  + +     VP  V +   + + +   K +  +  GQ  V Y
Sbjct: 295 WINEEPLELKNRKVYDCDFRFQHRNILVPCSVFKTTSNKLLIRLYKPKRAITPGQYAVLY 354

Query: 369 TSDSNEARVLGGGIISGS 386
             +    + LG   I+ S
Sbjct: 355 AGE----QCLGSAEITSS 368


>gi|302307975|ref|NP_984774.2| AEL087Cp [Ashbya gossypii ATCC 10895]
 gi|299789248|gb|AAS52598.2| AEL087Cp [Ashbya gossypii ATCC 10895]
          Length = 410

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 184/392 (46%), Gaps = 39/392 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYDARRV 79
           ++VAMSGGVDSSV AAL       V G+ +Q ++    S   + K   C  QD  D  +V
Sbjct: 29  IIVAMSGGVDSSVCAALYAHFP-KVRGLYMQNWSQTSGSGPVEGKAEPCYEQDWKDIEKV 87

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQL 136
              +N+     ++E  +   V  P    Y  G TP P + CNR VKF  L   L      
Sbjct: 88  GAYLNIPVERVNFERDYWLDVFEPMLQRYQQGYTPNPDIGCNRFVKFGALREHLDKEYGR 147

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   L TGHY R    +    +R   + R     +DQSY+L    ++ L DL  P+G + 
Sbjct: 148 GNYWLVTGHYAR---ILSPQTRRETHLLRSHYAPKDQSYYLSQVGREALADLLMPMGFLT 204

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ-- 251
           K  VR  A E+ L  A K DSQ ICFV   Q G++ + ++         G IV +  +  
Sbjct: 205 KPEVRQWAAELHLPNATKPDSQGICFVNNSQHGRFQNFLQEYLPSSV--GHIVTVEEESG 262

Query: 252 ---ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHR 302
              I G+H GI +YTIGQR G+ +  G+P      +V + D  ++ + IV  R++  +++
Sbjct: 263 TRRIWGQHRGIWSYTIGQRVGISLPQGDPKYQGAWYVSHKDPKTNTIEIVKGRDNRALYK 322

Query: 303 IYLREINWLG-------DGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEK 354
             L   ++             E A+ +G + +++ RS Q  V V  +Q  D G  +    
Sbjct: 323 DTLSVSDFESLVPPEDLASTLEAAMTNG-ELYMQFRSLQQAVKVTRLQLQDSGFELQLAT 381

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           ++  +A GQ C  Y +D    RVLG G +  +
Sbjct: 382 AQRAMAPGQYCCLYHND----RVLGSGTVRAT 409


>gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 171/373 (45%), Gaps = 21/373 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++ V +SGGVDSSV   LL   G+      L+++           C    D+  A+ VC
Sbjct: 88  LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKAVC 147

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D ++V   V    + +   V+      Y  G TP P V CN  +KF   +        D 
Sbjct: 148 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSKEFDY 207

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        D   +  ++    D+ +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 208 VASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFPLGCIPKDEV 267

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA ++ L   D+ DSQ ICF+ + K+ + V R      GI LE +     G +LG+H 
Sbjct: 268 RSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAE----TGDLLGKHR 323

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   + W+   
Sbjct: 324 GFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSLKWISRE 382

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTS 370
                 ++  +C V+           ++  +DG      V   + + G+A+GQ   FY  
Sbjct: 383 --PPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTAFYQG 440

Query: 371 DSNEARVLGGGII 383
            S     +G G+I
Sbjct: 441 RS----CIGSGVI 449


>gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
 gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
          Length = 497

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 178/391 (45%), Gaps = 23/391 (5%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           + E   L+    DKN  ++R+ + +SGGVDSSV   LL   G+      L+++       
Sbjct: 55  IIEPNYLSCCLPDKN--NLRIALLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFEN 112

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
               C   +D+  A+ VCD +++   V    + +   V+      Y  G TP P V CN 
Sbjct: 113 FWSECPWEEDLKYAKAVCDQVDIPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT 172

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            +KF   +     +  D +A+GHY +      D+  +  ++    D+ +DQ+YFL   +Q
Sbjct: 173 RIKFGAFMDAINNMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQ 232

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGI 239
            QL  L FPLG + K+ VR LA    L   D+ DSQ ICF+ + K+ + V R      GI
Sbjct: 233 AQLRRLIFPLGGISKDEVRKLATLFNLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGI 292

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SL 298
            LE +     G  LG H G   YTIGQR+GL +  G P +VV  D  ++ V V     S 
Sbjct: 293 MLEAE----TGDFLGNHRGFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSF 347

Query: 299 EVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND----DGVYVDF 352
           +  R  LR   + W      ++      +C V+         V ++  +    D   V  
Sbjct: 348 DKRRRLLRVGSLRWFNGSPPKET--SELQCKVRHGPGFYNCSVVIEPGEVDDQDVAIVQL 405

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + + G+A+GQ   FY   +     +G G+I
Sbjct: 406 CEDDQGLAAGQFAAFYKGRT----CIGSGVI 432


>gi|254566067|ref|XP_002490144.1| tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the
           wobble base of mitochondrial tRNA [Pichia pastoris
           GS115]
 gi|238029940|emb|CAY67863.1| tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the
           wobble base of mitochondrial tRNA [Pichia pastoris
           GS115]
          Length = 398

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 181/389 (46%), Gaps = 41/389 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+VVAMS GVDSSV AAL ++     +V G+ +  + S        S C   D  D ++ 
Sbjct: 25  RIVVAMSSGVDSSVTAALCRKIFPRSEVEGIFMANWTS-------DSNCTDSDWNDVKKT 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
           C  I +     D+E+ +   V  P    Y  G+TP P V CNR VKF  ++  +T  LG 
Sbjct: 78  CSHIGIPCRRVDFEKEYWTEVFEPMLEQYRIGKTPNPDVGCNRYVKFGKMIEHLTNTLGE 137

Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                L TGHY R    + D   R + + R   L +DQSY+L       L  +  P+G  
Sbjct: 138 QQPWWLVTGHYAR---VLEDITSREKHLLRSDYLPKDQSYYLSRVKDSSLERMFLPIGHF 194

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL--NG-- 250
            K  +R+LA++  L  + K DSQ +CFV Q K     K ++  +  E GDI+ +  NG  
Sbjct: 195 SKPEIRNLAKKWKLPTSSKPDSQGLCFVSQ-KEGHFKKFLDEFLPPEPGDIITIDENGFK 253

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV-YLDKNSSRVIVGPRESLEVHRIY 304
              G H G+ + TIGQR G+ +  G+       FV     K +  VIV    +  +++  
Sbjct: 254 HKWGSHQGLWHATIGQRSGVSMPQGDRNYKGAWFVSEKRPKTNEIVIVKGSNNPALYKDT 313

Query: 305 LREINWLGDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKS 355
           +   NWL  G F    +      +  V+ RS QDP+ +   +      N+  +    ++ 
Sbjct: 314 VETSNWLWLGPFNADNLKNISINELIVQYRSLQDPIGLLNWKFFSQSINNQRMTFRLKQK 373

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384
              ++ GQ  V Y  D    RVLG G+I+
Sbjct: 374 YRAISPGQIAVLYHRD----RVLGCGMIT 398


>gi|225435460|ref|XP_002282827.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 540

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 171/373 (45%), Gaps = 21/373 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++ V +SGGVDSSV   LL   G+      L+++           C    D+  A+ VC
Sbjct: 84  LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKAVC 143

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D ++V   V    + +   V+      Y  G TP P V CN  +KF   +        D 
Sbjct: 144 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSKEFDY 203

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY        D   +  ++    D+ +DQ+YFL   +Q QL  L FPLG + K+ V
Sbjct: 204 VASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFPLGCIPKDEV 263

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257
           R LA ++ L   D+ DSQ ICF+ + K+ + V R      GI LE +     G +LG+H 
Sbjct: 264 RSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAE----TGDLLGKHR 319

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLR--EINWLGDG 314
           G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R   R   + W+   
Sbjct: 320 GFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSLKWISRE 378

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTS 370
                 ++  +C V+           ++  +DG      V   + + G+A+GQ   FY  
Sbjct: 379 --PPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTAFYQG 436

Query: 371 DSNEARVLGGGII 383
            S     +G G+I
Sbjct: 437 RS----CIGSGVI 445


>gi|328350542|emb|CCA36942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pichia pastoris CBS 7435]
          Length = 397

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 181/389 (46%), Gaps = 41/389 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+VVAMS GVDSSV AAL ++     +V G+ +  + S        S C   D  D ++ 
Sbjct: 24  RIVVAMSSGVDSSVTAALCRKIFPRSEVEGIFMANWTS-------DSNCTDSDWNDVKKT 76

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
           C  I +     D+E+ +   V  P    Y  G+TP P V CNR VKF  ++  +T  LG 
Sbjct: 77  CSHIGIPCRRVDFEKEYWTEVFEPMLEQYRIGKTPNPDVGCNRYVKFGKMIEHLTNTLGE 136

Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                L TGHY R    + D   R + + R   L +DQSY+L       L  +  P+G  
Sbjct: 137 QQPWWLVTGHYAR---VLEDITSREKHLLRSDYLPKDQSYYLSRVKDSSLERMFLPIGHF 193

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL--NG-- 250
            K  +R+LA++  L  + K DSQ +CFV Q K     K ++  +  E GDI+ +  NG  
Sbjct: 194 SKPEIRNLAKKWKLPTSSKPDSQGLCFVSQ-KEGHFKKFLDEFLPPEPGDIITIDENGFK 252

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV-YLDKNSSRVIVGPRESLEVHRIY 304
              G H G+ + TIGQR G+ +  G+       FV     K +  VIV    +  +++  
Sbjct: 253 HKWGSHQGLWHATIGQRSGVSMPQGDRNYKGAWFVSEKRPKTNEIVIVKGSNNPALYKDT 312

Query: 305 LREINWLGDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKS 355
           +   NWL  G F    +      +  V+ RS QDP+ +   +      N+  +    ++ 
Sbjct: 313 VETSNWLWLGPFNADNLKNISINELIVQYRSLQDPIGLLNWKFFSQSINNQRMTFRLKQK 372

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384
              ++ GQ  V Y  D    RVLG G+I+
Sbjct: 373 YRAISPGQIAVLYHRD----RVLGCGMIT 397


>gi|299117474|emb|CBN73977.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 491

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 147/276 (53%), Gaps = 12/276 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRV 79
           RVVV MSGGVDSSVVA LL + GY+V+GV ++ ++ +  +   GS  C A  D+ DARRV
Sbjct: 37  RVVVGMSGGVDSSVVAMLLHQQGYEVVGVFMRNWDEQDET---GSDVCAADTDLEDARRV 93

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138
              + +     D+   + N V  P         TP   V CNR +KF         ++ A
Sbjct: 94  GYHLGIPVKTVDFSREYWNEVFEPSLQELDRCRTPNMDVACNRFIKFDAFREHALGRMSA 153

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+    G D  R  ++ +  D  +DQ+YFL     + L  + FPLG + K 
Sbjct: 154 DFVATGHYARTAPGPGGDWSRP-VLRQAEDGNKDQTYFLSGVPSEGLAKVLFPLGGLTKP 212

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256
            VR LA E GL +A K +S  +CFV  GK       I+  +    G+ V ++ G+++GRH
Sbjct: 213 EVRRLAEEGGLPVARKRESMGVCFV--GKRRSWASFISQYLTPSPGNFVCVDTGEVVGRH 270

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
            G+  YT+GQ+  L   M E  +V  LD +S+ V V
Sbjct: 271 GGVQLYTVGQKSHLD-GMPEKYYVAGLDSDSNSVYV 305


>gi|260655076|ref|ZP_05860564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jonquetella anthropi E3_33 E1]
 gi|260630187|gb|EEX48381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jonquetella anthropi E3_33 E1]
          Length = 344

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 180/372 (48%), Gaps = 42/372 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+V +SGGVDS      L+  GY V  V L++ +  +A +R        DV    R  + 
Sbjct: 5   VLVGVSGGVDSICSCLKLRDLGYQVAPVFLKMKD--QADER--------DVQRIARFEEV 54

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT--RQLGADV 140
             ++    D  E FR  VI PF     AG TP PCV CN+ +K   L      RQ+GA  
Sbjct: 55  TGLTVETVDCRELFRQRVIEPFLQELTAGRTPNPCVICNQFLKVRLLFEEADRRQIGA-- 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPM--DLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +ATGHY +    +  DG     +CR       +DQSY L+   Q  L  L FPL + +K 
Sbjct: 113 VATGHYAK---ILQKDG-----LCRLARGASAKDQSYMLYRLPQAYLERLVFPLENSEKG 164

Query: 199 SVRDLARE-MGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            VR LARE +G    D  DSQDICF+   G    +   +       G +V  +GQ+LGRH
Sbjct: 165 QVRRLAREALGGSFGD-GDSQDICFLGSLGLNAFLASHVTGAAIQPGQMVSDSGQVLGRH 223

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+ +YT+GQR+GLG+  G P +V     +  ++I+   E  E  RI L++  W      
Sbjct: 224 RGLAHYTVGQRKGLGLG-GGPWYVTEKRLDERQLILSHVERPE-RRIILKDPVW------ 275

Query: 317 EDAVVDGFKCF-VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSDSNE 374
              + D  K + V+ R    P P  ++R D+G +     +  G  A GQ+ V Y  +   
Sbjct: 276 -HVLPDETKSYLVQTRYRSHPKPCTLRRTDEGRWAVLLDAPSGASAPGQSAVVYDGEL-- 332

Query: 375 ARVLGGGIISGS 386
             V+GGGII  S
Sbjct: 333 --VVGGGIIHQS 342


>gi|257784715|ref|YP_003179932.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Atopobium parvulum DSM 20469]
 gi|257473222|gb|ACV51341.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Atopobium parvulum DSM 20469]
          Length = 361

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 183/371 (49%), Gaps = 27/371 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V + MSGGVDS++ AALL   GY+V  + ++ ++      +   C    D+ DA RVC T
Sbjct: 5   VYLGMSGGVDSALSAALLLEAGYNVKAIYMRNWSKDLPGFK---CPWADDLADAERVCVT 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +   V+D E  ++  V+     +Y  G TP P V CN+TVKF          GA+ +A
Sbjct: 62  LGIDLDVWDCEAEYKATVVDYLLDAYEHGRTPNPDVMCNQTVKFGTFAERAFAEGANFVA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESVR 201
           TGHY ++       G ++  + R  D  +DQ+YFL+           FP+G +  K  VR
Sbjct: 122 TGHYAQNV-----PGTKK--LLRAADAHKDQTYFLWRVPGHLFERTLFPIGHIATKAEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
            +  E GL I  K DS  ICF+  G        ++     +GD++    G+ILG H+G  
Sbjct: 175 SMCAERGLGIETKPDSDGICFI--GPVGLRTFLLDTFQKKQGDVIEWETGKILGTHDGAF 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLFE 317
            +T+GQR+GL +  G   +VV  D   + V V       +L   R+ L +++W+      
Sbjct: 233 LFTVGQRKGLNIGGGPARYVVATDTLKNVVYVTCDLNCPALWTRRMELSDMHWISG---- 288

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +   DG +  ++ R +   VPV F   ++   + +F++    VA GQ+ V Y  D  E  
Sbjct: 289 EPAADG-RYVIRTRHTGALVPVTFTLTDNQCGFAEFDQPVKTVAPGQSAVLY--DGQE-- 343

Query: 377 VLGGGIISGSK 387
           V+GGGII   K
Sbjct: 344 VVGGGIIEADK 354


>gi|254578364|ref|XP_002495168.1| ZYRO0B04994p [Zygosaccharomyces rouxii]
 gi|238938058|emb|CAR26235.1| ZYRO0B04994p [Zygosaccharomyces rouxii]
          Length = 408

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 185/386 (47%), Gaps = 34/386 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCD 81
           V++AMS GVDSSV AAL      +  G+ +Q +  S+  +  +   C  +D  D  RV +
Sbjct: 29  VIIAMSSGVDSSVSAALFAEQYPNARGIYIQSWGKSQSLTDPQLEPCYERDWKDVGRVAE 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD- 139
            + +     ++E+ +   V  P   SY  G TP P + CNR VKF  L   + +Q GA+ 
Sbjct: 89  HLGIPVDKVNFEKEYWLDVFEPMLESYNKGWTPNPDIGCNRFVKFGKLREYLDQQYGANN 148

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY R      +D      + R     +DQSY+L       L  L FP G + K 
Sbjct: 149 YWLVTGHYARVLSSSYNDQPH---LLRSFYPAKDQSYYLSQVDTDILGQLIFPTGHLTKP 205

Query: 199 SVRDLAREMGL-DIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHL----NG 250
            VR+LA   GL   + K DSQ ICFV   Q GK+   ++         G+IV +    N 
Sbjct: 206 EVRELAVAAGLTTTSQKPDSQGICFVNNSQSGKFKHFLEHYLPNSP--GNIVTIEEDGNK 263

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFV--VY----LDKNSSRVIVGPRESLEVHRIY 304
           ++ GRH G+ ++TIGQ+ GL +  G+P +    Y    L  ++  VIV  R++  +++  
Sbjct: 264 RVWGRHPGLWSHTIGQKVGLSMPQGDPRYAGSWYISDKLQDSNELVIVRGRDNPALYQDT 323

Query: 305 LREINWLG-----DGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358
           +   N          L ++A+  G K F++ RS QDP+ V     + D   +    ++  
Sbjct: 324 VTITNTFSLDLNFRRLMKEAIEQG-KLFIQYRSLQDPIAVKDCHFDQDETVLKLGSAQRA 382

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           +A GQ C  Y  +    RVLG G IS
Sbjct: 383 MAPGQYCCLYLQN----RVLGSGTIS 404


>gi|224010034|ref|XP_002293975.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220970647|gb|EED88984.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 392

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 187/397 (47%), Gaps = 33/397 (8%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           S D  + P    V + +SGGVDSSV   LL R  Y+V    L+++   + S   G C   
Sbjct: 4   SKDTTRKPT---VAMLLSGGVDSSVAMHLLLRQNYNVTAFYLRIWLEDELS-HLGECPWE 59

Query: 71  QDVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            D+   + VC+   NVS       + +R  V+         G TP P + CN  VKF   
Sbjct: 60  DDLQVCQSVCEHAGNVSLETVSLGKEYRERVVQYTIEEAQRGRTPNPDIMCNSRVKFGCF 119

Query: 130 LSVTRQLGADV--LATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQL 185
           L    + G D   +A+GHY  ++L   DD     ++ + R  D  +DQSYFL A TQ+QL
Sbjct: 120 LEYIEESGMDFDYVASGHY--AQLKDDDDTSSISQKRLFRAPDPVKDQSYFLCALTQKQL 177

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FP+G+ +K  VR+LA +  L   ++ DSQ +CF+ + ++ D +          GD+
Sbjct: 178 SKVIFPIGEYQKSEVRELATQFQLPNRNRPDSQGLCFLGKVRFDDFLASYLGDRP--GDV 235

Query: 246 VH-LNGQILGRHNGIINYTIGQRRGLGVAMGE------PLFVVYLDKNSSRVIVGPRE-- 296
           V  LNG ++GRHNG+  +T+GQR+G+G  M        P +VV  D+    V V  R   
Sbjct: 236 VDALNGDVIGRHNGLWYHTVGQRKGIGKVMFPLATAKGPWYVVAKDQERDIVYVSNRYDE 295

Query: 297 ---SLEVHRIYLREINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349
              +       + ++ WL          +      +  +KIR     V   +   DDG  
Sbjct: 296 DDFAQARSEFEVEDVRWLAGEAPMNAHHEKSWHEVRLDMKIRHGPRVVQGTLMLKDDGSV 355

Query: 350 --VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             +  ++ + G+A GQ  VFY  D+ E   LG  +IS
Sbjct: 356 GNIRLDQKDGGLAPGQYVVFYQPDTLEC--LGAAVIS 390


>gi|219685499|ref|ZP_03540316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii Far04]
 gi|219672898|gb|EED29920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii Far04]
          Length = 344

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 20/319 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY R ++      +++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYARIQI-----KEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K  + G   +G+IV    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIVEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+   +  R +L  EI+W+ +G+
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWI-NGM 289

Query: 316 FEDAVVDGFKCFVKIRSSQ 334
             D   + FK  +KIR  +
Sbjct: 290 PSD--FENFK--IKIRHGE 304


>gi|328794279|ref|XP_003252036.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial [Apis
           mellifera]
          Length = 319

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 164/370 (44%), Gaps = 67/370 (18%)

Query: 31  VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVF 90
           VDSSV A LLK  GYDVIGV ++ ++    +   G C A  D  D +RV D I + +Y  
Sbjct: 1   VDSSVSALLLKEQGYDVIGVFMKNWDD---TDDTGVCTATDDYEDVKRVADQIGIPYYSI 57

Query: 91  DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSR 150
           ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD +A GHY ++ 
Sbjct: 58  NFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFALNLDADYIAMGHYAKT- 116

Query: 151 LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             + D      +M RP D  +DQ+YFL    Q Q+  + FPL ++ K             
Sbjct: 117 --ITDKNGITHMM-RPKDGNKDQTYFLSQLNQNQISRVIFPLANLTKPQ----------- 162

Query: 211 IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGL 270
                                           GD+V  +G+++G H G++ YTIGQR GL
Sbjct: 163 -------------------------------SGDMVTPDGKVVGHHAGLMYYTIGQRSGL 191

Query: 271 GVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK- 325
           G+   +    P FVV  +   +++IV  ++  +   +Y  E+       F       FK 
Sbjct: 192 GLGSTKESTAPWFVVGKNLQKNQLIV--QQGYDSKLLYATELEASDMSFFTGQPDHDFKI 249

Query: 326 -CFVKIRSSQDPVPVFVQ----RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            C  K R  Q  V V V     +N   VY  F++    V  GQA V Y  +      LGG
Sbjct: 250 HCSAKFRYRQPDVGVTVSYDAAKNKAKVY--FDEPARAVTPGQALVLYQGE----ECLGG 303

Query: 381 GIISGSKRSD 390
           G I  + ++D
Sbjct: 304 GNIDCAYQND 313


>gi|71894390|ref|YP_278498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma synoviae 53]
 gi|123644146|sp|Q4A634|MNMA_MYCS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71851178|gb|AAZ43787.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma synoviae 53]
          Length = 372

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 151/269 (56%), Gaps = 23/269 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVYD 75
           VVV +SGGVDSSV A LLK++ Y+VIG+ ++ ++S   +   G+       C    D  D
Sbjct: 8   VVVGLSGGVDSSVAAYLLKKN-YNVIGLFMRNWDSLINNDYLGNREINNDICPQELDYKD 66

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VT 133
           A+ +   +++  Y  D+ + + + V   F S Y  G TP P + CN+ +KF DL +    
Sbjct: 67  AQEIARQLDIPLYRVDFVKEYWDYVFENFISEYKKGRTPNPDILCNKYIKF-DLFAKHAF 125

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L  D +ATGHY + +     +G+    + R  D  +DQSYFL   +++QL  + FPL 
Sbjct: 126 NELKTDYIATGHYAKMK-----NGE----LYRASDKNKDQSYFLSQLSKEQLKKVLFPLE 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ K+ +R +ARE  L  A K DS  ICF+ + K+   ++  N   A +G+++ + N +I
Sbjct: 177 NLTKDEIRKIAREQNLITAAKKDSTGICFIGERKFAKFLQ--NYIPAKKGNVLDITNQKI 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVV 281
           +G H+G   YTIGQR+GL +   +  + V
Sbjct: 235 VGEHSGCFYYTIGQRKGLNLGGNKESYYV 263


>gi|161870410|ref|YP_001599582.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis 053442]
 gi|161595963|gb|ABX73623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 053442]
          Length = 334

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 158/328 (48%), Gaps = 21/328 (6%)

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C   QD +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF
Sbjct: 18  CSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKF 77

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L      GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL 
Sbjct: 78  KCFLDYAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLE 132

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FPLG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V
Sbjct: 133 RAIFPLGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMV 190

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRI 303
              G+ +G H G++ YT+GQR+GLG+   GEP FV    L KN   V+ G    L    +
Sbjct: 191 TPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----L 246

Query: 304 YLREI--NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
           Y R +  N L   L E      + C  + R +  P  +    +D+   + F++ +  V  
Sbjct: 247 YTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTP 305

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389
           GQ+ V Y  D      LGGGII  + + 
Sbjct: 306 GQSAVLYDGDI----CLGGGIIQTTDKP 329


>gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lentisphaera araneosa HTCC2155]
 gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lentisphaera araneosa HTCC2155]
          Length = 353

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 185/370 (50%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ + +SGGVDSSV   LLK +G +++    L+++   + +   G C   +D+   R V
Sbjct: 1   MKIAMLLSGGVDSSVALRLLKEEGGHEITAFYLKIWLEDELAFL-GECPWEEDMQYVRAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++   V   ++ + + V+    +    G TP P + CN  +KF        +   D
Sbjct: 60  CEELDIPLQVVPLQKEYMDRVVSYVLAELKQGRTPSPDILCNERIKFGAFFDAIDET-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V ++ +    + R  D  +DQ+YFL + +Q QL    FP+G + K  
Sbjct: 119 KVATGHYAQ----VQENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGSLMKSR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNG 258
           VR+LA E  L    + DSQ ICF+ +  Y D V R + G   +GDI+ +   +  G H G
Sbjct: 175 VRELAEEYDLPNKVRKDSQGICFLGKISYPDFV-RFHLG-EKQGDIIEIETDEKKGEHKG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDGL 315
           +  +TIGQR GLG++ G P +VV  D  ++ V +  +  LE      + +  ++W     
Sbjct: 233 VWFHTIGQRSGLGLSGG-PWYVVKKDLATNIVYISHKNGLEDQLRDEVTVNTVHWTSGKF 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            ++  +      VK+R     V    +   +  V++   + + G+A GQ+C+FY    ++
Sbjct: 292 PKNTNLK-----VKLRHGPQLVEARIMDLGESRVFIKLAEKDKGIAPGQSCIFY----DD 342

Query: 375 ARVLGGGIIS 384
              LG G+I 
Sbjct: 343 LICLGRGVIE 352


>gi|66546481|ref|XP_624200.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Apis
           mellifera]
          Length = 395

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 147/279 (52%), Gaps = 16/279 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V +SGG+DS+V A LLK  GYDV GV ++ ++ +  +   G C   +D   A  +C 
Sbjct: 4   KIIVGISGGIDSAVTAFLLKNKGYDVTGVFMKNWDIKNET---GKCQIDEDKEHAEWICK 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + +     ++ + + N +       Y  G TP P + CN+ +KF    +  R +L AD 
Sbjct: 61  KLKIPFVEVNFVKEYWNNIFCYLTEQYENGYTPNPDILCNKYIKFDQFFNFARTKLQADA 120

Query: 141 LATGHYIRSRL--YVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY ++    Y+        + + +  DL +DQ++FL    QQ L    FPLG+  K
Sbjct: 121 IATGHYAKTSFGPYLEHFKLNTNVKLLQAKDLGKDQTFFLCQVPQQALRYFMFPLGNYLK 180

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           + V+ +A E+GLD I  K +S  ICF+ +  + + +    +     GD + L NG+++G+
Sbjct: 181 KDVKKIAEEIGLDKIVHKKESTGICFIGKRNFQNFISEYISDKP--GDFIDLDNGKVVGK 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPL--FVVYLDKNSSRVIV 292
           H G   +T+GQ   LG   G P+  F+   D  S+ +IV
Sbjct: 239 HKGFHYWTVGQNVKLG---GYPIAYFIYKKDIQSNNIIV 274


>gi|47678421|emb|CAG30331.1| dJ1163J1.4 [Homo sapiens]
 gi|109451226|emb|CAK54474.1| TRMU [synthetic construct]
 gi|109451804|emb|CAK54773.1| TRMU [synthetic construct]
 gi|119593832|gb|EAW73426.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_e [Homo sapiens]
 gi|162844904|emb|CAP58845.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo
           sapiens]
 gi|208965646|dbj|BAG72837.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
           [synthetic construct]
          Length = 376

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 158/320 (49%), Gaps = 38/320 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ +                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R  
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
             I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR 
Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 295

Query: 296 ESLEVHRIYLR--EINWLGD 313
           +   ++R  LR   ++W+ +
Sbjct: 296 DHPALYRDLLRTSRVHWIAE 315


>gi|260889735|ref|ZP_05900998.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
 gi|260860341|gb|EEX74841.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 4/203 (1%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +  +  +   G C A +D  D   V +
Sbjct: 12  KVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIAVAE 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L    +LGAD +
Sbjct: 69  QLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKLGADYV 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  ++   DGK +  M R +D  +DQ+YFL   +Q+QL  + FPLG+  K  +R
Sbjct: 129 ATGHYARI-IHEEKDGKIKSTMLRGIDDNKDQTYFLCQLSQEQLEKVLFPLGEYTKPQIR 187

Query: 202 DLAREMGLDIADKSDSQDICFVQ 224
           ++A +  L  A K   Q+   ++
Sbjct: 188 EIAEKYNLVTAKKKTVQESALLE 210


>gi|195043220|ref|XP_001991577.1| GH11989 [Drosophila grimshawi]
 gi|193901335|gb|EDW00202.1| GH11989 [Drosophila grimshawi]
          Length = 381

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 185/390 (47%), Gaps = 31/390 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDS+V A LLK  G +V+GV ++ ++        G C   QD+ DA   C 
Sbjct: 4   RVVVGMSGGVDSAVSAHLLKERGLNVLGVFMRNWDEHD---EIGRCTGEQDLKDAEWACR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGAD 139
            + +     +Y +++  AV   F   Y  G TP P + CN+ +KF DL        L  D
Sbjct: 61  QLQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKF-DLFHRHALDTLQYD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRI--------MCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +ATGHY R+ L  GD  + R          +  P D  +DQ++FL    Q  L    FP
Sbjct: 120 AVATGHYARNSL--GDYLEHRSTDQQKADVRLLIPADTFKDQTFFLAGIPQTALQFTMFP 177

Query: 192 LGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN- 249
           LG + K  V+ LAR +GL  +A K +S  ICFV +  +   ++   +     G  V ++ 
Sbjct: 178 LGGLLKTEVKQLARRIGLQRLAVKRESTGICFVGKRDFKAFIREYIS--CKPGHFVDVDS 235

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           G+++G H GI  +T+GQR  L   + +P FV   D  S+ + V       +L   RI + 
Sbjct: 236 GEVVGNHEGIHQWTVGQRCRLSSYL-QPYFVARKDAASNTIFVAAGHDHPALHSIRIRIG 294

Query: 307 EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           + NWL +   +     G  +C  + + ++  V  +++  +    V  +     +  GQ  
Sbjct: 295 DFNWLCNRARQQLATSGSLRCRFRFQHTKPVVECWLRPFE----VLLDAPLRAITPGQYA 350

Query: 366 VFY--TSDSNEARVLGGGIISGSKRSDAVE 393
           VFY   +    AR+L    +   ++  A+E
Sbjct: 351 VFYDDVACLGSARILCAEPLQQMEQQAALE 380


>gi|210635362|ref|ZP_03298498.1| hypothetical protein COLSTE_02429 [Collinsella stercoris DSM 13279]
 gi|210158425|gb|EEA89396.1| hypothetical protein COLSTE_02429 [Collinsella stercoris DSM 13279]
          Length = 405

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 121/226 (53%), Gaps = 14/226 (6%)

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQDICFVQQG 226
           D  +DQSY L++ TQ++L     PLG + KE  VR +ARE G + A K DSQ ICFV   
Sbjct: 179 DPSKDQSYVLYSLTQERLAHTLLPLGGLFKERDVRRIAREQGFENASKRDSQGICFVPGN 238

Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286
            +   ++R       EGDIV+  G++LGRH G I YT+GQR+GLGVA   P++V  +D  
Sbjct: 239 DFATYIERRRGAALPEGDIVNTRGEVLGRHQGAIRYTVGQRKGLGVACAHPVYVTGIDAQ 298

Query: 287 SSRVIVGPRESLEVHRIYLREINW-----LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           ++ V +G  E L    +   +  W     + + L ++A  +G     KIR      P  +
Sbjct: 299 ANTVTLGEVEDLMASGLVANDWIWSAPAQIMEDLLDEAGAEGLPVSAKIRYRHPAQPARL 358

Query: 342 QRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +R  DG    + + F+  E GVA GQA V Y  +     VLGGG +
Sbjct: 359 RRAADGQDGYLEIAFDDPERGVAPGQAVVVYAGEV----VLGGGTV 400



 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 46/86 (53%)

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+C +G D  DA  +   +  SH V D    F   V+  F  +Y  G TP PC+DCNR +
Sbjct: 3   GACGSGSDADDAAAIARRLGFSHEVIDLRATFERRVVEKFVRTYEQGRTPNPCIDCNRHL 62

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSR 150
           KF  LL   R  G D +ATGHY R R
Sbjct: 63  KFDALLDYARDHGCDYIATGHYARIR 88


>gi|255086163|ref|XP_002509048.1| predicted protein [Micromonas sp. RCC299]
 gi|226524326|gb|ACO70306.1| predicted protein [Micromonas sp. RCC299]
          Length = 478

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 160/319 (50%), Gaps = 34/319 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++V V +SGGVDSSV   LLK  G+D +   LQ++          +C    D+  AR 
Sbjct: 14  RKLKVAVLLSGGVDSSVALTLLKAAGHDCVAFYLQIWFVEDFRNTWDACPWEDDLNVARG 73

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF---SDLLSVTRQ 135
           VC+ ++V   V     ++ + V+       + G TP P + CN  VKF   +D L   R 
Sbjct: 74  VCEHLDVPLEVVPLTNQYWDLVVKHSIEQISRGRTPNPDMLCNSRVKFGAFTDWLETNRA 133

Query: 136 LGADVLATGHY--------IRSRLYVGDDG---KRRRIMCRPM---DLERDQSYFLFATT 181
                +A+GHY        I +    GDDG     RR  CR +   D  +DQ+YFL   +
Sbjct: 134 GEFHRVASGHYAAMDRVQGILADTLHGDDGMNGTSRRHPCRLIMSGDARKDQTYFLAHLS 193

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-----KRIN 236
           Q+QL  L FP+G + K  +R++AR  GL  A++ DSQ ICF+ + K+ + V     +R  
Sbjct: 194 QRQLAALTFPIGGLPKTQIREIARSAGLPNAERKDSQGICFLGKVKFSEFVAEHLGERPG 253

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
           A + LE       G  LG H+G   +TIGQR GLG++ G P +V   D   + V V  R+
Sbjct: 254 AIVELE------TGTRLGTHSGFWFHTIGQRSGLGLS-GGPWYVAAKDVPGNVVYV-TRD 305

Query: 297 --SLEVHRIYLR--EINWL 311
             S++  R   R  E +WL
Sbjct: 306 YYSVDKERNTFRVGEFSWL 324


>gi|322802160|gb|EFZ22595.1| hypothetical protein SINV_00348 [Solenopsis invicta]
          Length = 417

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 22/306 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK  G++V GV ++ ++ R  +   G C   +D  DAR +CD 
Sbjct: 5   VVVGISGGVDSAVAAFLLKIKGFNVTGVFMKNWDIRDET---GKCMVEKDYDDARWICDK 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141
           + +     ++ + + N V       Y  G TP P + CN+ +KF     + R +  AD +
Sbjct: 62  LKIPLIQVNFVKEYWNEVFSDIVEKYQNGYTPNPDILCNKNIKFDKFFHLARNRFQADAI 121

Query: 142 ATGHYIRSRL------YVGDDGK---RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ATGHY ++        Y  +  K     R++ +  D  +DQ++FL    Q+ L    FPL
Sbjct: 122 ATGHYAKTSFGAYLENYEANKSKYLLNVRLL-QAQDSNKDQTFFLSQVPQETLRHCMFPL 180

Query: 193 GDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250
           G   K  V+ +A E GL  IA K +S  ICFV + ++   +    A     GD + L+ G
Sbjct: 181 GTHLKNHVKMMATEAGLCQIARKKESMGICFVGKREFQHFISEYIADKP--GDYIDLDSG 238

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
            ++G+H+GI   TIGQR  +   + +P +V   D+ S+ VIV       +L    +  RE
Sbjct: 239 LLIGKHDGIHKRTIGQRCNISGCL-KPYYVFSKDQESNTVIVVGGTTHPALYSDFLITRE 297

Query: 308 INWLGD 313
           I+W+ +
Sbjct: 298 IHWINE 303


>gi|47459275|ref|YP_016137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mobile 163K]
 gi|81614195|sp|Q6KHK4|MNMA_MYCMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|47458604|gb|AAT27926.1| tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate)
           [Mycoplasma mobile 163K]
          Length = 370

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 181/379 (47%), Gaps = 35/379 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           ++VVA+SGGVDSSV A +LK +  ++VI V ++ ++S   +   G+       C   +D 
Sbjct: 3   KIVVALSGGVDSSVTAFILKYQQNHEVIAVFMRNWDSFANNDILGNEDINQDICPQEKDW 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132
            DA+++   +N+  Y  D+ + + + V       Y  G TP P + CN+ +KF   +  V
Sbjct: 63  EDAKKIASQLNIPIYRVDFVKEYYDEVFTYLIEEYRQGRTPNPDIFCNKYIKFGKFIEYV 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +    D +ATGHY +             ++ R  D  +DQSYFL   +  QL  + FPL
Sbjct: 123 EKNFNPDFIATGHYAKVE---------NSLLYRAKDRNKDQSYFLSQLSSDQLKKIIFPL 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
            D+ K+ +R +A E  L  A K DS  ICF+ +  +   ++  N    + G+IV +   +
Sbjct: 174 KDLTKDVIRKIAAENNLVTAQKKDSTGICFIGERNFDKFLQ--NYIPNMPGNIVDIETNE 231

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREI 308
           ++G+H G++ YT+GQR+     M  P +V   D  +  + V    S   L+  ++   E 
Sbjct: 232 VVGQHVGVMYYTLGQRKINLSGMKYPYYVAGHDLKNKILYVASIHSKNYLKSDKLEAIEF 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367
           N +     +  +        K R  Q+ + + +   D + + + +      V  GQ  V 
Sbjct: 292 NLINKNFNKKNLT------AKFRYRQEDIKIEILNIDKNKIEISYPDEFEAVTPGQHVVI 345

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y  +S     +GGGII+ +
Sbjct: 346 YDGES----CVGGGIINKT 360


>gi|255712651|ref|XP_002552608.1| KLTH0C08844p [Lachancea thermotolerans]
 gi|238933987|emb|CAR22170.1| KLTH0C08844p [Lachancea thermotolerans]
          Length = 426

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 193/402 (48%), Gaps = 45/402 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+AMS GVDSSV AA+    G+ +  G+ +Q +   ++ +     C  +D  D ++V  
Sbjct: 36  IVIAMSSGVDSSVAAAMF--SGFPNACGIYMQNWTETRSEREP---CHERDWKDVQKVGA 90

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y  G TP P + CNR +KF  L   L  +   G 
Sbjct: 91  HLNLPVEKVNFEQDYWLDVFEPMLRDYEQGVTPNPDIGCNRFIKFGKLRAHLDASLGTGN 150

Query: 139 DVLATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             L TGHY  SR+   +    G     + R     +DQSY+L       L  L  P+G +
Sbjct: 151 YWLVTGHY--SRVLQTESKALGLNSWHLLRAFYAPKDQSYYLSQVPSAALPALCLPMGVL 208

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQI-- 252
            K  VR++A ++ L  A K DSQ ICFV   ++  + + +   I +  G+I+ L+     
Sbjct: 209 TKPEVREMAHDLRLPTAHKPDSQGICFVANSQHGKISRFLEQYIPSHAGEIITLDPITGE 268

Query: 253 ---LGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGP---RESLEVH 301
               GRH G+ NYTIGQ+ G+ +  G+P      FV     +++ +++       SL  +
Sbjct: 269 RTEWGRHTGLWNYTIGQKVGISMPQGDPRYQGAWFVADKRVDTNEIVICKGRDNPSLYKN 328

Query: 302 RIYLREINWLGD-GLFEDAV---VDGFKCFVKIRSSQDPVPV------FVQRNDDGVYVD 351
           R+ L++ + LG+    ++AV   + G    ++ RS Q+P  V        +  +  + + 
Sbjct: 329 RVVLKDFSPLGNLNDVQEAVKNNLAGGAIHIQYRSLQEPAKVSRCCWETTEAGESRLVMT 388

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            E+ +  +A GQ C  Y    ++ R+LG G I     SDAVE
Sbjct: 389 LEQKQRAMAPGQYCTIY----HKERILGSGTILA---SDAVE 423


>gi|291229392|ref|XP_002734665.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase-like [Saccoglossus kowalevskii]
          Length = 390

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 15/282 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            +V  MSGGVDSSV A LLKR G+ V G+ ++ ++S   S   G C    D  DA+ VCD
Sbjct: 9   HIVCGMSGGVDSSVAALLLKRQGFRVTGLFMKNWDSLDES---GICSTEGDYNDAQFVCD 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   + + + + V   F   Y  G TP P + CN+ +KF   L+   +   A  
Sbjct: 66  KLDIPLHQVSFVKEYWHDVFSNFLKEYENGTTPNPDILCNKLIKFDKFLNYAMKNFDAHA 125

Query: 141 LATGHYIR-----SRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LATGHY R     S L   +  K+  I + + +D  +DQ++FL   +Q  L    FPLG+
Sbjct: 126 LATGHYARTSGGYSVLTNPESVKKNGIALLKGLDANKDQTFFLSQISQNALQKTIFPLGE 185

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           + K+ V+++A   G + I  K +S  ICF+   K+   ++      +  G+ V + +G I
Sbjct: 186 LMKKEVKEIALRAGFERIVKKKESMGICFIGTRKFQSFIQEYLETAS--GNFVSVEDGTI 243

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
           +G H G   YT+GQR  +G    +  F+ + D  +  + V P
Sbjct: 244 MGDHKGCHLYTVGQRSNIG-GQSQAWFICHKDSTTQTIYVAP 284


>gi|158300718|ref|XP_320574.3| AGAP011960-PA [Anopheles gambiae str. PEST]
 gi|157013296|gb|EAA00244.3| AGAP011960-PA [Anopheles gambiae str. PEST]
          Length = 377

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 36/381 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V G  ++ ++    S   G C   QD  DA+R+C 
Sbjct: 4   RVVVGISGGVDSAVSAYLLKKRGFEVCGAFMKNWDLIDES---GYCSGEQDFEDAQRLCR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
           T+N+     ++ + +   V   F   Y AG TP P + CNR +KF+      R+ LGAD 
Sbjct: 61  TLNIPLEEINFVKDYWVEVFGNFLKDYEAGITPNPDILCNRHIKFNRFFHHARERLGADA 120

Query: 141 LATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           +ATGHY R+     L   ++ ++ R++  P D  +DQ++FL   + + L    FP+G + 
Sbjct: 121 IATGHYARTNFGPFLERYNENEKVRLLMAP-DPIKDQTFFLSQISAEALRRTMFPIGALT 179

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFV-----QQ--GKYFDVVKRINAGIALEGDIVHL 248
           K  V+ LA E+GL+  A K +S  ICFV     QQ  G+Y +       G  ++ D    
Sbjct: 180 KPQVKRLAIEVGLEAYARKKESMGICFVGKRSFQQFIGEYIET----KPGPFVDVD---- 231

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +G+ +G+H G+ ++T+GQ+  +G    +P +V+   + S+ + V        L    +Y 
Sbjct: 232 SGREVGQHAGLHHWTVGQKCKIG-GCPQPYYVLRKHRASNVIEVASGHDHPLLYTDMVYT 290

Query: 306 REINWLG--DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASG 362
               W+    GL  +  V   +C  + + ++  V    ++ +   ++V  ++    +  G
Sbjct: 291 ERPVWINAPPGLSSEGRV--VRCEFRFQHTKPLVGCSVIETHGRQLFVKLDRPLRAITPG 348

Query: 363 QACVFYTSDS--NEARVLGGG 381
           Q  VFY ++     AR+L  G
Sbjct: 349 QYAVFYRNEECFGSARILQPG 369


>gi|323355773|gb|EGA87587.1| Slm3p [Saccharomyces cerevisiae VL3]
          Length = 349

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 138/269 (51%), Gaps = 16/269 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L  L  P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEPLF 279
              GRH+G+ +YTIGQ+ G+ +   +P +
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNY 293


>gi|323334236|gb|EGA75618.1| Slm3p [Saccharomyces cerevisiae AWRI796]
          Length = 362

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 138/269 (51%), Gaps = 16/269 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81
           V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D  RV  
Sbjct: 29  VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L   L      G 
Sbjct: 89  HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  +R+    +GK    + R +   +DQSY+L       L  L  P+G + K 
Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206

Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251
            VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++ Q    
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264

Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEPLF 279
              GRH+G+ +YTIGQ+ G+ +   +P +
Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNY 293


>gi|270011194|gb|EFA07642.1| hypothetical protein TcasGA2_TC030543 [Tribolium castaneum]
          Length = 365

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 180/376 (47%), Gaps = 46/376 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDS+              GV +Q ++    +  KG C A  D  DA  VCD
Sbjct: 6   KVVVGISGGVDSA--------------GVFMQNWD---IADEKGYCSADADYKDAALVCD 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++     ++ + + N V       Y  G TP P V CNR +KF+      R +LGAD 
Sbjct: 49  KLDIKLTHVNFVKHYWNEV--NLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 106

Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGHY R+        Y  + G R   +   +D  +DQ++FL    Q+ L    FPLGD
Sbjct: 107 IATGHYARTSFGSYLEHYNPEKGVR---LLNAVDWFKDQTFFLCQVNQEALQRTMFPLGD 163

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           + K  V+ +ARE GL+ IA K +S  ICF+   K+ D ++         GD V ++  ++
Sbjct: 164 LMKPEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDDKP--GDFVDVDTAKV 221

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REIN 309
           +G+HNG+  +T+GQR  L  +   P FV    +DKN   V+ G +  L    I L  E +
Sbjct: 222 VGQHNGVHQWTLGQRARLH-SYESPYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPH 280

Query: 310 WLGDGL--FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           W+       ++ V++   C  K + ++  V   V +   G+ +   + +  +  GQ  V 
Sbjct: 281 WIHSQPPDLQNGVLE---CDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPGQFAVL 337

Query: 368 YTSDSNEARVLGGGII 383
               S +   LGG  I
Sbjct: 338 ----SKDGECLGGARI 349


>gi|241950493|ref|XP_002417969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Candida dubliniensis CD36]
 gi|223641307|emb|CAX45687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Candida dubliniensis CD36]
          Length = 424

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 188/388 (48%), Gaps = 43/388 (11%)

Query: 17  NPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            PK D  ++VAMS GVDSSV AAL K D  +V G+ +       A+  + + C  +D  D
Sbjct: 57  TPKPDDHIIVAMSSGVDSSVCAALFK-DYPNVHGLYM-------ANWSQSATCTERDWKD 108

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +RVC  + +S     ++E  + + V VP    Y  G TP P + CN+ VKF  L+    
Sbjct: 109 VQRVCRDLGISSCERVNFEHEYWHDVFVPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLH 168

Query: 135 QL--GAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +   G D  L TGHY R   +  + G+    + R +   +DQSY+L +   + L  +  P
Sbjct: 169 EKYDGKDWWLVTGHYARIMKH-NETGEYH--LLRGLSQRKDQSYYLSSIPPRSLSKILLP 225

Query: 192 LGDMKKESVRDLARE-MGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDIVH 247
           +G   K  +R LA +   L  A K DSQ +CFV  QQ  + +    +N  I    GDIV 
Sbjct: 226 IGHYIKPQIRKLAHDRFQLHTATKPDSQGLCFVNPQQSNFREF---LNDYIPENPGDIVT 282

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV-----GPRES 297
            +G++ GRH G+ + TIGQ+  + +   +P      FV   +   +++I+      PR  
Sbjct: 283 EDGKVWGRHKGLWHATIGQKSSVCMPQADPKYQGIWFVSDKNYEKNQIIIVKGHDNPR-- 340

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSE 356
           L    + L ++ WL     ++ V+       +  S    +PV  V  + D + V+ E   
Sbjct: 341 LFKQTVELTQLEWLCP---KEEVIHLRGLQFQYHSLSKSIPVKRVIDSGDKLVVELETPV 397

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             +A GQA V Y    N  RVLGGG+IS
Sbjct: 398 RALAPGQAGVLY----NGNRVLGGGMIS 421


>gi|114686941|ref|XP_515202.2| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 isoform 2 [Pan troglodytes]
          Length = 435

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 186/409 (45%), Gaps = 64/409 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHY---------IRSRLYVGDDGKRRRIMC--------------RPMDLERDQSYFL 177
           +ATGHY         +R+RL++       +++C              +  D  +DQ++FL
Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV---- 232
              +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +    
Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242

Query: 233 -KRINAGIALEGDIVHLNGQILGRHNGIINY---------TIGQRRGLGVAMGEPLFVVY 282
             R    I++E      + ++LG H G   +          +   RG    + EP  +  
Sbjct: 243 QPRPGHFISIE------DNKVLGTHKGWNVFLSPLGCLVPPLCFYRGTVGCLREPC-MCE 295

Query: 283 LDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQD 335
            D     V V PR +   ++R  LR   ++W+ +     L  D +++   C  + R    
Sbjct: 296 KDSVKGNVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMA 352

Query: 336 PVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            VP  +  N DG V+V   ++   +A+GQ  VFY  D      LG G I
Sbjct: 353 LVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDE----CLGSGKI 397


>gi|195438780|ref|XP_002067310.1| GK16353 [Drosophila willistoni]
 gi|194163395|gb|EDW78296.1| GK16353 [Drosophila willistoni]
          Length = 380

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 187/384 (48%), Gaps = 26/384 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS++ A LLK  GY+V+GV ++ ++    +   G C    D+ DA   C  
Sbjct: 5   VVVGISGGVDSAISAHLLKERGYNVLGVFMRNWDENDEA---GRCSGELDLKDAEWACQR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           +++     +Y +++  AV   F   Y  G TP P + CN+ +KF    +  R+ L  D +
Sbjct: 62  LDIELRQVNYVKQYWMAVFTQFLDDYQQGLTPNPDILCNKHIKFDLFHTHCRERLQYDAV 121

Query: 142 ATGHYIRSRL--YVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           ATGHY  +    Y+     G+  R++  P D  +DQ++FL   +Q+ L    FPLG M K
Sbjct: 122 ATGHYAANSWGNYLEQQLQGEEPRLLI-PQDKFKDQTFFLSGISQRSLRHTMFPLGCMLK 180

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
             V+ LAR++GL  +A+K +S  ICFV +  +   +    +     G  + ++ G  +G+
Sbjct: 181 TEVKQLARQIGLQRLAEKRESTGICFVGKRNFKSFIGEYLS--PRPGPFIDIDTGCEVGQ 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           H GI  +TIGQR  L   + +P FV   +   + + V       +L  +R+ +  INWL 
Sbjct: 239 HEGIHQWTIGQRCRLSSFL-QPYFVARKEPLRNIIYVASGHEHPALHSNRLTIDPINWLC 297

Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  V +G  +C  + + ++  V   +   +    V  +     +  GQ  VFY   
Sbjct: 298 STAKTRYVQEGRLRCRFRFQHTKPLVNCSIIEEE----VVLDSPLRAITPGQYAVFY--- 350

Query: 372 SNEARVLGGGIISGSKRSDAVEES 395
            ++   LG   I  SK  D +E+ 
Sbjct: 351 -DDQACLGSARILRSKPLDQLEQQ 373


>gi|323214164|gb|EFZ98924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 230

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 138/242 (57%), Gaps = 13/242 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LGAD +ATGHY+R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LG 254
           +G
Sbjct: 229 IG 230


>gi|242018594|ref|XP_002429759.1| methyltransferase, putative [Pediculus humanus corporis]
 gi|212514771|gb|EEB17021.1| methyltransferase, putative [Pediculus humanus corporis]
          Length = 401

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDS+V A LLK+ GY+VIGV ++ ++        G C   +D+  A+  C+ 
Sbjct: 7   VAVGISGGVDSAVAALLLKKRGYNVIGVYMKNWD---LVDENGICSTSEDLEYAKYTCNQ 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           I++  +  ++ + + N V V F   Y  G TP P + CN+ +KF+   +   ++L AD +
Sbjct: 64  IDIPFHEVNFVKEYWNNVFVAFTKEYEDGYTPNPDILCNKYIKFNAFSNYAFKKLRADAI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPM---DLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY ++      +  + +   + +   D+ +DQ++FL    Q+ L    FPLGD+ K 
Sbjct: 124 ATGHYAKTSFGNFLENYKPQTKAKLLVAKDIIKDQTFFLSQIPQETLKKTIFPLGDLHKS 183

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256
            V+ +A E  +  ++ K +S  ICF+    +   + +        G  +++  G+  G+H
Sbjct: 184 EVKKIAEENDMKKLSRKPESMGICFIGSRNFQTFIDQYIK--PKPGKFINMITGKEEGKH 241

Query: 257 NGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSR--VIVGPRESLEVHRIYLRE-INW 310
           +GI  +T+GQR   +G  V    P FVV  D  ++   V+ G   SL    I++ E   W
Sbjct: 242 DGIHMWTVGQRCRIKGFSV----PRFVVKKDPTTANIWVVAGTNHSLLYSYIFVTEKPYW 297

Query: 311 LGD---GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           + +    L+    V  FK F  ++S+ +   + ++  +D + V  +K    +  GQ  VF
Sbjct: 298 IAEPPNNLYYGCKVH-FK-FQHVKSTTNCQVISIK--NDNLLVIIDKPLRALTQGQYAVF 353

Query: 368 YTSDSNEARVLGGGIIS 384
           Y     E   LG   I+
Sbjct: 354 Y----QENECLGSARIT 366


>gi|75761642|ref|ZP_00741591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74490863|gb|EAO54130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 269

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 141/273 (51%), Gaps = 16/273 (5%)

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CN+ +KF   L     LGAD +ATGHY R       DG+ +  M R +D  +DQ+YFL  
Sbjct: 2   CNKEIKFKAFLEHAIALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQ 56

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            +Q+QL    FPLG++KK  +R++A+E GL  A K DS  ICF+ +  + D +   N   
Sbjct: 57  LSQEQLSKTMFPLGELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLP 114

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G +  L+G++ G+H+G++ YTIGQR GLG+   G+P F V   KN    I+   +  
Sbjct: 115 AQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGF 172

Query: 299 EVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
               +Y  E+     G   + V +  FKC  K R  Q+   V VQ  D+  V +  ++  
Sbjct: 173 HNELLYGDEVIATNVGWVSNKVKETEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPI 232

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
             +  GQA VFY  D      LGG  I    RS
Sbjct: 233 RAITPGQAVVFYDGD----ECLGGATIDEVYRS 261


>gi|281420586|ref|ZP_06251585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella copri DSM 18205]
 gi|281405359|gb|EFB36039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella copri DSM 18205]
          Length = 360

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 175/370 (47%), Gaps = 22/370 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV     + G       +++       K +  C + +D+  A  
Sbjct: 8   KDKRIAVLLSGGVDSSVVVWEFAQLGLHPDCFYIKI---GPEEKEEWDCSSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D    + N V         AG TP P V CNR +KF    +   ++G 
Sbjct: 65  VARKYGCKLQVVDCHHEYWNEVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGH 121

Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D++ATGHY ++     D+   + ++  P D  +DQ+ FL      QL    FP+G   
Sbjct: 122 NYDLIATGHYAQTET---DENGDKWLVTSP-DPVKDQTDFLAQIESWQLKKAIFPIGHHI 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K  VR++A E  L  A + DSQ ICF+ Q  Y D ++R        GD++ +  G+ +G 
Sbjct: 178 KNEVREIAEEEHLINAKRKDSQGICFLGQINYNDYIRRYLG--EKPGDVIEMETGKRIGE 235

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G+  +TIGQR+GLG   G P FV+  D  ++ + V      +    Y ++   L D  
Sbjct: 236 HKGLWFHTIGQRKGLGFGGG-PWFVIKKDVENNILYVS--HGYDPQSAYKKDFP-LHDFH 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374
           F    V   K   KIR + +  P  +++ +DG + +  E++  GVA GQ CV Y  D + 
Sbjct: 292 FLTREVAMQKVTFKIRHTPEYHPATIEKLEDGRWMIHSEEAIHGVAPGQFCVVY--DEHH 349

Query: 375 ARVLGGGIIS 384
            R  G G I+
Sbjct: 350 HRCYGSGEIT 359


>gi|302828090|ref|XP_002945612.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
           nagariensis]
 gi|300268427|gb|EFJ52607.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
           nagariensis]
          Length = 402

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 176/384 (45%), Gaps = 32/384 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V V +SGGVDSS+   LL+  G+      LQ++         G+C   +D+  AR+VC
Sbjct: 5   LNVAVLLSGGVDSSLALRLLRAAGHTCHAFYLQIWFQEDFRNFWGACPWEEDLQYARQVC 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQLG 137
           +++ V   V      + + V+        AG TP P + CN  VKF    D L  T    
Sbjct: 65  ESLGVPLEVVPLTTEYWDRVVSGSVEEIRAGRTPNPDMWCNSRVKFGAFYDYLDRTYGAA 124

Query: 138 ADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            D +A+GHY R  R+         R++  P D  +DQ+YFL   + +QL  + FPLG + 
Sbjct: 125 FDRVASGHYARVERVPRRSSPAEVRLLLTP-DAVKDQTYFLANLSPRQLSRVMFPLGCLT 183

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253
           K  VR LA    L   ++ DSQ ICF+ + K+ + V+       G  LE +     GQ L
Sbjct: 184 KSQVRKLAAAADLANKNRKDSQGICFLGKVKFHEFVREHLGEWPGPILEAE----TGQPL 239

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR----IYLREIN 309
           G H G   YT+GQR G+ +  G P +VV  D   + V+V  R+  +  +          N
Sbjct: 240 GLHQGYWFYTVGQRGGIKLP-GGPWYVVAKDTLRNAVLVS-RQYYDADKQRNTFTCGPFN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVY-------VDFEKSEVGV 359
           WL      D        FVK+R         ++ +D   DG Y       V   +++ G+
Sbjct: 298 WLDAATRPDPDPRAGPLFVKVRHGPSMYCCELRLHDARGDGSYGNDSYGTVVLAQNDQGL 357

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A+GQ  VFY     + R LG  +I
Sbjct: 358 AAGQYAVFY----QDGRCLGCAVI 377


>gi|326428152|gb|EGD73722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salpingoeca sp. ATCC 50818]
          Length = 518

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 39/322 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V MSGGVDS+V AALLK+ G+DV G  ++ ++ ++    +  C +  +    +R+C+
Sbjct: 50  RVAVGMSGGVDSTVAAALLKQQGWDVHGFFMRNWDEKE---ERNVCTSEAEYASVQRICN 106

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++     D+   + N V  P   +Y AG TP P V CN  +KF       R LG D +
Sbjct: 107 RLSIPCQRVDFVADYWNDVFTPTVHAYEAGITPNPDVLCNAHIKFDAFYDYVRNLGFDWV 166

Query: 142 ATGHYIRS------RLYVGDDGKRR---------------------RIMCRPMDLERDQS 174
           ATGHY R+       L+  D  + +                      ++ R +D  +DQ+
Sbjct: 167 ATGHYARTTTINSDSLHTQDLHQEKQQQQQPQQQQQQQQQQRQRGVTLLRRAVDAHKDQT 226

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVK 233
           YFL  T  Q+L  + FP+G M K  V+  AR +G  ++A++ +S  +CFV + K+   + 
Sbjct: 227 YFLAGTPSQRLAHVLFPIGHMHKADVKAYARNLGFPELAEQKESMGMCFVGKRKFAHFLS 286

Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVI 291
              A  +L G  V +  G  +G+    +  T+GQ  G  VA   +P FVV  D ++  V 
Sbjct: 287 SYTAA-SLAGQFVDVETGACVGQGQSAMLLTMGQ--GARVAGCPQPYFVVGKDMSTHTVY 343

Query: 292 VGPRES---LEVHRIYLREINW 310
           V P +    L   R  + E+ W
Sbjct: 344 VAPGDQHPLLYSARFGVGELTW 365


>gi|300121184|emb|CBK21565.2| unnamed protein product [Blastocystis hominis]
          Length = 475

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 152/294 (51%), Gaps = 19/294 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGG+DSSV A LL + GYDV GV ++ +++ + +  K  C    D  DAR V + 
Sbjct: 137 VFVGLSGGIDSSVSAYLLLKQGYDVKGVFMKNWSAEEETG-KPLCPLKDDFIDARNVAEF 195

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +    +D+E+ +   V      ++++G TP P V CNR +KF          GAD +A
Sbjct: 196 LGIPLITYDFEKEYWTNVFEVCLDAFSSGLTPNPDVLCNRYIKFDAFAHRCFHEGADYIA 255

Query: 143 TGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           TGHY R+     L    +G     + R +D  +DQSYFL       L  + FP+G M K 
Sbjct: 256 TGHYCRTNQGKPLSPFSEGIE---LLRGIDKSKDQSYFLSQINHSLLSRVLFPVGGMTKT 312

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +VR LA E+GL  A K +S  ICF+ +      +    +  A  G I  ++G+ +G+H+G
Sbjct: 313 AVRRLAEEVGLPNARKEESMGICFIGERNMKSFLNEYLS--ASPGKIRTIDGREIGKHDG 370

Query: 259 IINYTIGQRRGLGVAMG---EPLFVVYLDKNSSRVIVGP--RESLEVHRIYLRE 307
           I+ +TIGQ    GV +    E  +V   +  ++ +IV P    +L  H  Y+ +
Sbjct: 371 ILFFTIGQ----GVKIPNQREKYYVCQKNAQTNELIVCPGNHPALFRHDFYVAQ 420


>gi|194379662|dbj|BAG58183.1| unnamed protein product [Homo sapiens]
          Length = 328

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 148/300 (49%), Gaps = 37/300 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ +                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R  
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGP 294
             I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D  K    V+ GP
Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVVSGP 295


>gi|281348930|gb|EFB24514.1| hypothetical protein PANDA_011920 [Ailuropoda melanoleuca]
          Length = 392

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 172/373 (46%), Gaps = 50/373 (13%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103
           GY V GV ++ ++S       G C A +D  DA RVC  +++  +   Y + + N V   
Sbjct: 1   GYQVTGVFMKNWDSLD---EHGVCIADRDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSD 57

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162
           F S Y  G TP P + CN+ +KFS         LGAD +ATGHY R+ L   +  +++ I
Sbjct: 58  FLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAVATGHYARTSLEDEEVFQQKHI 117

Query: 163 ------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
                             + +  D  +DQ++FL   +Q  L    FPLG + K+ V+ +A
Sbjct: 118 RRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIA 177

Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQILGRHNG 258
            E  L  +  K +S  ICF+ +  + + +      R    I++E      + ++LG H G
Sbjct: 178 AENRLHHVLQKKESMGICFIGKRNFENFILQYLQPRPGKFISIE------DSKVLGTHKG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD-- 313
              YT+GQR  +   + EP +VV  D     V V PR +   ++R  LR   ++W+ +  
Sbjct: 232 WFLYTLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEP 290

Query: 314 --GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
              L  D +++   C  + R     VP  +  N DG V+V   K+   +A GQ  VFY  
Sbjct: 291 PAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALAPGQFAVFYKG 347

Query: 371 DSNEARVLGGGII 383
           D      LG G I
Sbjct: 348 DE----CLGSGKI 356


>gi|50291717|ref|XP_448291.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527603|emb|CAG61252.1| unnamed protein product [Candida glabrata]
          Length = 406

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 191/385 (49%), Gaps = 32/385 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCD 81
           VV+AMSGGVDSSV AAL         GV +Q ++  +A +      C  +D  D  ++ D
Sbjct: 29  VVIAMSGGVDSSVAAALFAHYP-KATGVYMQNWSESQALESIAEEPCYEKDWKDVAKLGD 87

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD- 139
            + V     ++E  +   V  P    Y  G TP P + CN+ VKF  L S + ++ G D 
Sbjct: 88  FLGVPVEKVNFESDYWIDVFEPMLQEYDQGRTPNPDIGCNKFVKFGKLKSYLDQKYGHDN 147

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L TGHY  SR+    + K   ++ R    ++DQSY+L       L  L  P+G + K 
Sbjct: 148 YHLVTGHY--SRVLQHLESKEYHLL-RGYYPQKDQSYYLSQINGGILPRLVLPMGHLTKP 204

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG----QIL 253
            VRD+ARE+ L  A+K DSQ ICFV   ++    K +   +  + G+++ +       + 
Sbjct: 205 EVRDMARELQLPTANKRDSQGICFVNNSQHKKFNKFLEHYLTNKPGNVITVEPTGEKTVW 264

Query: 254 GRHNGIINYTIGQRRGLGVAM--GEPLFV--VYLDK----NSSRVIVGPRESLEVHRIYL 305
           G H G+ +YT+GQ+ G G+++   +P +    Y+ +     +  VIV  RE+ +++R  L
Sbjct: 265 GTHKGLWSYTLGQKIGDGISLPQADPRYTGAWYVSEKIPATNEIVIVRGRENPQLYRDKL 324

Query: 306 R--EINWLGDG-LFEDAVVDGFK---CFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358
           R  +  +LG+      A+ +  +      + RS  +P P+  +  + D  ++ F++ +  
Sbjct: 325 RIQDFEYLGEPQTIRKAITEALQRGELRARYRSLMEPEPLISINTDADEFHLQFQRPQRA 384

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           +A GQ C   + +    R+LG G I
Sbjct: 385 MAPGQFCCLLSQN----RILGSGPI 405


>gi|288924750|ref|ZP_06418687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae D17]
 gi|288338537|gb|EFC76886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae D17]
          Length = 353

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 23/370 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L   G       +++       + +  C + +D+  A  
Sbjct: 2   KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D    + + V         AG TP P V CNR +KF    +   ++G 
Sbjct: 59  VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDAKMGH 115

Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D  ++ATGHY ++    G    R+ ++  P D  +DQ+ FL      QL    FP+G   
Sbjct: 116 DYDLIATGHYAQTEWIDG----RKWLVTSP-DPVKDQTDFLAQIYDWQLRKAIFPIGHYM 170

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K+ VR++A    L  A + DSQ ICF+ Q  Y + ++R        GD++ L  G+ +G 
Sbjct: 171 KDEVREIAEREHLVNAKRRDSQGICFLGQINYNEYLRRYLG--EQPGDVIELETGKTIGE 228

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G+  +TIGQR+GLG   G P FVV   K+  R ++      +    Y ++   + D  
Sbjct: 229 HRGLWFHTIGQRKGLGFG-GGPWFVV--KKDVGRNVLYVSHGYDPQTAYKQDFR-MHDFH 284

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374
              A +D  +   KIR + D +P  V++  +G+Y     + + GVA GQ CV Y  D   
Sbjct: 285 VLTAPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQH 342

Query: 375 ARVLGGGIIS 384
            R  G G I+
Sbjct: 343 HRCFGSGEIT 352


>gi|303284375|ref|XP_003061478.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456808|gb|EEH54108.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 384

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 180/380 (47%), Gaps = 43/380 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V +SGGVDSSV   LL+  G+DV    LQ++           C    D+ +AR VC
Sbjct: 1   MKVAVLLSGGVDSSVALTLLQAAGHDVTAFYLQIWFQEDFRNYWDQCPWEDDLSEARAVC 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQLG 137
           D + V   V      + + V+       + G TP P + CN  VKF    + L+ T    
Sbjct: 61  DLLRVPLEVVPLTRPYWDLVVSHSVEEISRGRTPNPDMLCNSRVKFGAFREWLAETHPGR 120

Query: 138 ADVLATGHYIRSRLYVGD----------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              +A+GHY       G           DGK + +M    D  +DQ+YFL A +Q QL  
Sbjct: 121 FARVASGHYAALERPGGPFGGAGDDADADGKVKLVMS--GDAHKDQTYFLAALSQAQLEG 178

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           L FP+G + K  +RD+AR  GL  A++ DSQ ICF+ + K+ + V          G IV 
Sbjct: 179 LSFPIGGLPKAEIRDIARRAGLPNANRKDSQGICFLGKVKFSEFVAEHLG--ERPGKIVE 236

Query: 248 L-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           +  G  +G H G   +TIGQR GLG++ G P +V    K++ R IV           ++ 
Sbjct: 237 IETGLEIGEHRGFWFHTIGQRSGLGLS-GGPWYVC--GKDAKRNIV-----------FIT 282

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQA 364
           +  + G     D     F+ + K+R  +      ++ + DG    V  + ++ G+A+GQ 
Sbjct: 283 KDYYAG-----DKERRAFRLYCKVRHGERRYRCTLKFDPDGEGGRVVLDANDQGLAAGQF 337

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D  E   LG G+I+
Sbjct: 338 AVFY--DGRE--CLGSGVIA 353


>gi|145356777|ref|XP_001422602.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582845|gb|ABP00919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 173/369 (46%), Gaps = 19/369 (5%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGGVDS+V A  L+R G       ++ +++R        C    D+  AR + + +
Sbjct: 17  VVGLSGGVDSAVAAWALERCGARATATLMRNWDARDEDAAT-DCSHRDDLKSARAIAEKL 75

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLA 142
           N+     D+   + + V  P+  ++ +G TP P ++CNR VKF  LL      LG   LA
Sbjct: 76  NLRFIESDFTREYWHEVFEPYVEAFESGATPNPDLECNRRVKFGALLRRAMEDLGGRYLA 135

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    V D+G   R++ R +D  +DQSYFL +   + L    FPLG + K   R+
Sbjct: 136 TGHYARIDRDV-DEGAPPRLL-RGIDQTKDQSYFLASVRGEALRSACFPLGAVFKSETRE 193

Query: 203 LAREMGLDIADKSDSQDICFVQQ---GKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
            AR +G D AD+  S  ICF+ +   G++       + G  ++ +    + G     H G
Sbjct: 194 AARILGFDCADRRSSAGICFIGRRPFGEFIGEYITPSEGAFVDAETARPVPGA--APHRG 251

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD-G 314
           + +YT+GQR  +G A  +P FVV  +  ++ V V      ++L   R  L +  W+ +  
Sbjct: 252 LASYTVGQRAKIGGAP-KPWFVVGKNVAANVVYVAKGAEHDALYSTRAALADEFWISNRR 310

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              D      +   K R +        +     +   F++ E  V  GQA V Y  D   
Sbjct: 311 PTSDDGSSSVRLLAKTRYASFSSSFVPRVESSPLRATFDRPERAVTPGQALVLYDGDV-- 368

Query: 375 ARVLGGGII 383
              LGGG+I
Sbjct: 369 --CLGGGVI 375


>gi|68482055|ref|XP_715045.1| hypothetical protein CaO19.7245 [Candida albicans SC5314]
 gi|46436648|gb|EAK96007.1| hypothetical protein CaO19.7245 [Candida albicans SC5314]
          Length = 423

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 193/388 (49%), Gaps = 41/388 (10%)

Query: 17  NPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            PK D  ++VAMS GVDSSV AAL K D  +V G+ +       A+  + + C  +D  D
Sbjct: 54  TPKPDDHIIVAMSSGVDSSVCAALYK-DYPNVHGLYM-------ANWSQSATCTERDWKD 105

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +RVC  + +S     ++E  +   V +P    Y  G TP P + CN+ VKF  L+    
Sbjct: 106 VQRVCQDLGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLH 165

Query: 135 Q----LGAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +     G D  L TGHY R   +  + G+    + R +   +DQSY+L +  Q  L  + 
Sbjct: 166 KKYDGTGKDWWLVTGHYARIMKH-NETGEYH--LLRGLSQRKDQSYYLSSIPQSSLSKIL 222

Query: 190 FPLGDMKKESVRDLAR-EMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDI 245
            P+G   K  +R+LA  +  L  A K DSQ +CFV  QQ  + +    +N  I    GDI
Sbjct: 223 LPIGHYIKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREF---LNDYIPENPGDI 279

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYL-DKNSSR---VIVGPRESLE 299
           +  +G++ G+H G+ + TIGQ+  + +   +P +  + ++ DKN  +   +IV   ++ +
Sbjct: 280 ITEDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVKGHDNPK 339

Query: 300 VHR--IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSE 356
           + +  + L ++ WL     ++ V+       +  S    +PV  +  + D + V+ E   
Sbjct: 340 LFKQTVELTQLEWLHP---KEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTVELETPV 396

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             +A GQA V Y  +    +VLGGG+I+
Sbjct: 397 RALAPGQAGVLYKGN----QVLGGGMIN 420


>gi|238878196|gb|EEQ41834.1| hypothetical protein CAWG_00021 [Candida albicans WO-1]
          Length = 422

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 193/388 (49%), Gaps = 41/388 (10%)

Query: 17  NPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            PK D  ++VAMS GVDSSV AAL K D  +V G+ +       A+  + + C  +D  D
Sbjct: 53  TPKPDDHIIVAMSSGVDSSVCAALYK-DYPNVHGLYM-------ANWSQSATCTERDWKD 104

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +RVC  + +S     ++E  +   V +P    Y  G TP P + CN+ VKF  L+    
Sbjct: 105 VQRVCQDLGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLH 164

Query: 135 Q----LGAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +     G D  L TGHY R   +  + G+    + R +   +DQSY+L +  Q  L  + 
Sbjct: 165 KKYDGTGKDWWLVTGHYARIMKH-NETGEYH--LLRGLSQRKDQSYYLSSIPQSSLSKIL 221

Query: 190 FPLGDMKKESVRDLAR-EMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDI 245
            P+G   K  +R+LA  +  L  A K DSQ +CFV  QQ  + +    +N  I    GDI
Sbjct: 222 LPIGHYIKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREF---LNDYIPENPGDI 278

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYL-DKNSSR---VIVGPRESLE 299
           +  +G++ G+H G+ + TIGQ+  + +   +P +  + ++ DKN  +   +IV   ++ +
Sbjct: 279 ITEDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVKGHDNPK 338

Query: 300 VHR--IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSE 356
           + +  + L ++ WL     ++ V+       +  S    +PV  +  + D + V+ E   
Sbjct: 339 LFKQTVELTQLEWLHP---KEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTVELETPV 395

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             +A GQA V Y  +    +VLGGG+I+
Sbjct: 396 RALAPGQAGVLYKGN----QVLGGGMIN 419


>gi|88195430|ref|YP_500234.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|87202988|gb|ABD30798.1| tRNA methyl transferase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 257

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 140/265 (52%), Gaps = 41/265 (15%)

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY  +R++  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD+
Sbjct: 3   LGADYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDI 58

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+
Sbjct: 59  EKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGK 116

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H+G++ YTIGQR GLG+   G+P FVV              ++L+ + +Y+ E  +  D 
Sbjct: 117 HSGLMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDA 162

Query: 315 LFEDAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
           L+ D ++                GF+C  K R  Q    VFV+R ND  + V F +    
Sbjct: 163 LYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRA 222

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           +  GQA VFY  D      LGG  I
Sbjct: 223 ITPGQAVVFYQGDV----CLGGATI 243


>gi|167751814|ref|ZP_02423941.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216]
 gi|167660055|gb|EDS04185.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216]
          Length = 448

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 1/202 (0%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ +SGGVDSSV A LL++ G++VIG+ +  ++    +  +G C    D   A  V  
Sbjct: 3   RVVIGLSGGVDSSVAAYLLQQAGHEVIGLFMINWHDTTGT-LEGDCPWHDDRLFAELVAR 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +  D  +++R  V+    S YA G TP P V CNR +KF   L    +LGAD +
Sbjct: 62  RLDIPFHTVDLSDQYRRRVVDYMFSEYAKGRTPNPDVLCNREIKFDVFLKEALKLGADFV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DG+    +    D  +DQSYFL   +Q+QL    FP+G + K  VR
Sbjct: 122 ATGHYCRKAEETAPDGRTIYKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGHLLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFV 223
            +A +M L  A + DSQ ICFV
Sbjct: 182 RIAEQMKLATAKRKDSQGICFV 203



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 249 NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G+ +G+HNG   YTIGQR+GLG+    E LFV+  D   + + VG     P       R
Sbjct: 311 DGKKIGQHNGAHFYTIGQRKGLGIGGRKESLFVLATDVEQNVIYVGEGDNHPGLYRRALR 370

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           I   E++W+ D L E    +  +  V+IR  Q      +    D  Y+ F++ + G+  G
Sbjct: 371 IAPGELHWI-DPLRELKTGESRRFDVRIRYRQPLQGAELFIRPDAAYLLFDEPQRGITPG 429

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q   +Y  D     ++G G+I+
Sbjct: 430 QFAAWYDGDE----LVGSGVIA 447


>gi|58261940|ref|XP_568380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptococcus neoformans var. neoformans JEC21]
 gi|57230553|gb|AAW46863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 478

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 183/403 (45%), Gaps = 43/403 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----------------------LYNSRK 59
            V V MSGGVDS+    +L+     +  V ++                       Y+S  
Sbjct: 71  HVTVGMSGGVDSATTLRILREFPIHLDVVFMRNWDPLLSESPPESSLPPSPISLAYSSGS 130

Query: 60  ASKRK---GSCCAGQDVYDARRVCDTINV---SHYVFDYEERFRNAVIVPFASSYAAGET 113
            S R+     C   +D  D  +V   + +   S  + D  + + + V  P    +  G T
Sbjct: 131 TSNREQNLSPCQWERDWNDVLKVATQVGIPKDSIKLVDLSKEYWSRVFEPAVGVWERGGT 190

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P P VDCNR +KF  LL V  +     LATGHY R              + R +D  +DQ
Sbjct: 191 PNPDVDCNREIKFGALLDVLPKKDRHFLATGHYGRVAHVPLLSHPGPSKLLRAVDKSKDQ 250

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVV 232
           +Y+L   T+QQL     PLG + K  VR LA   GL  A K +S  +CF+ ++GK+ D +
Sbjct: 251 TYYLSQMTEQQLSRAILPLGSLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFGDFI 310

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRV 290
            +  +     G +V+L+G+ L  H G+  YTIGQR  +   + +P+FV    + +  + +
Sbjct: 311 SQYTSPPE-SGYLVNLSGERLAEHKGLWYYTIGQRARVANQL-KPMFVAKKGVGEKGTDI 368

Query: 291 IVGP---RESLEVHRIYLREINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVP--VFVQRN 344
           +V P      L    ++  + +W+ D    + +V +  K  +++R   +PV   + V  N
Sbjct: 369 LVVPGSDHPMLLCKSVHTSDFHWIHDTFPRELLVKEPEKVGIQVRHRMNPVGGRIVVGGN 428

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
              V V+F    VGV+ GQ    +    ++   LG G+I G+K
Sbjct: 429 VKDVTVEFNDPIVGVSPGQVVAIW----HDGWCLGSGVIDGTK 467


>gi|13508161|ref|NP_110110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pneumoniae M129]
 gi|2496370|sp|P75365|MNMA_MYCPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|1674103|gb|AAB96067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pneumoniae M129]
 gi|301633672|gb|ADK87226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pneumoniae FH]
          Length = 370

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 177/386 (45%), Gaps = 35/386 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---------RKASKRKGSCCA 69
           ++  V V +SGGVDS+V A LLK+   +VIG+ ++ +++         R  ++ K  C +
Sbjct: 2   QNKTVFVGISGGVDSAVSALLLKQQYREVIGIFMECWDNTLNNDQLGHRAFNEHKSGCSS 61

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D  +A+ +   + +     +  E +   V +P   ++  G TP P + CNR +KF  +
Sbjct: 62  KEDFREAQAIAQLLGIKLIKQNLVEPYWKQVFLPTIDAFKNGLTPNPDMLCNRLIKFGLM 121

Query: 130 LSVTRQLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +QL  +   ATGHY             + ++  P D  +DQ+YFL      QL D+
Sbjct: 122 RDYCKQLDPNSDFATGHYAALSW-----DNNQPLLAIPKDKHKDQTYFLAHVKPAQLQDV 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDI 245
            FPL  + K  VR +A      +A K DS  ICF+ +  + D +K    +  G+  +   
Sbjct: 177 VFPLAHLLKTEVRQIALAHHFSVATKKDSTGICFIGERHFSDFLKNYLPVKPGVIYDWK- 235

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRI 303
                + LG H G+  YT GQR GL +       FVV  D K ++  +    E L+   I
Sbjct: 236 ---TQRQLGSHEGVWFYTTGQRSGLNLGGQAARNFVVEKDLKTNTLYVSSDPEDLQRRGI 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVAS 361
            L   NWL         V      V+IR +Q  V   + VQ N + V V  ++    V +
Sbjct: 293 TLSHFNWLYQPNPLTQTV-----LVRIRHAQPLVQGHITVQPN-NVVQVQLDQPIDRVTN 346

Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387
           GQ  V YT +      LG GII+ S+
Sbjct: 347 GQYGVLYTQN---GICLGSGIITASQ 369


>gi|145352290|ref|XP_001420484.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580718|gb|ABO98777.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 175/365 (47%), Gaps = 19/365 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSSV  ALL+  G++ +   LQ++           C   +D+  A  
Sbjct: 5   KPLRVAVLLSGGVDSSVALALLRAAGHECVAFYLQIWFQEDFRNTWDQCPWEEDLRVAES 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQ 135
           VC+ + V        + + N V+         G TP P V CN  VKF    + L+ T  
Sbjct: 65  VCERVGVPLETVPLTDEYWNLVVKDSVEEIRKGRTPNPDVLCNSRVKFGAFREWLARTHP 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D +A+GHY  + +   D G+  R++    D  +DQ+YFL   +Q+QL  + FP+G M
Sbjct: 125 GEFDRVASGHY--AAVERADVGELARLVMS-GDTFKDQTYFLADLSQEQLGSVCFPVGGM 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
            K  +R LA    L  A + DSQ ICF+ + K+ + +        + GDI+ + +G++LG
Sbjct: 182 PKAEIRALAASAELPNAGRKDSQGICFLGKVKFSEFIAEHLG--EMPGDIIEVESGKVLG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHR--IYLREINWL 311
           +H     +TIGQR GL    G P +V   D  N+   +     SL+  R    +   NW+
Sbjct: 240 KHRAYWFHTIGQRSGL-FLHGGPWYVAGKDCVNNIVYVTRDYYSLDKARDTFTVAGFNWI 298

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV---YVDFEKSEVGVASGQACVF 367
                    ++G +  VK+R  ++      Q  D DG     V+  + + G+A GQ  VF
Sbjct: 299 SGQEPPLESIEGLR--VKVRHGENIYACSFQFKDVDGERCGEVNIGQDDQGLAPGQYAVF 356

Query: 368 YTSDS 372
           Y  D+
Sbjct: 357 YDGDT 361


>gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 359

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 173/370 (46%), Gaps = 23/370 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L   G       +++       + +  C + +D+  A  
Sbjct: 8   KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D    + + V         AG TP P V CNR +KF    +   ++G 
Sbjct: 65  VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDAKMGH 121

Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D  ++ATGHY ++    G    R+ ++  P D  +DQ+ FL      QL    FP+G   
Sbjct: 122 DYDLIATGHYAQTEWIDG----RKWLVTSP-DPVKDQTDFLAQIYDWQLRKAIFPIGHYM 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K+ VR++A    L  A + DSQ ICF+ Q  Y + ++R        GD++ L  G+ +G 
Sbjct: 177 KDEVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLG--EQPGDVIELETGKTIGE 234

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G+  +TIGQR+GLG   G P FVV   K+  R ++      +    Y ++   + D  
Sbjct: 235 HRGLWFHTIGQRKGLGFG-GGPWFVV--KKDVGRNVLYVSHGYDPQTAYKQDFR-MHDFH 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374
                +D  +   KIR + D +P  V++  +G+Y     + + GVA GQ CV Y  D   
Sbjct: 291 VLTTPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQH 348

Query: 375 ARVLGGGIIS 384
            R  G G I+
Sbjct: 349 HRCFGSGEIT 358


>gi|325973163|ref|YP_004250227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma suis str. Illinois]
 gi|323651765|gb|ADX97847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma suis str. Illinois]
          Length = 369

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 189/384 (49%), Gaps = 37/384 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDAR 77
           + +VV+A+SGGVDSSV A LLK++GY V G+ +  ++S+         C    +D   A 
Sbjct: 6   EKKVVIALSGGVDSSVAALLLKKEGYKVFGIHMINWDSQLNELEMDKECESLSKDREYAE 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            +   + +  YV+++   + N V  PF S         P + CN  +KF  LLS V R  
Sbjct: 66  LIAQQLEIPFYVYNFTFEYWNYVFKPFISLLNKNLIGNPDILCNSAIKFGTLLSKVKRVF 125

Query: 137 GADV-LATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           G DV LATGHY     I + + +G         C   + ++DQ+YFL   TQ QL ++ F
Sbjct: 126 GPDVLLATGHYAKVISIENNVLLG--------TCS--NEQKDQTYFLSKLTQFQLREIIF 175

Query: 191 PLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248
           PL ++  K+ VR++A+E      +K  S+ ICF+ +  ++  + +     + +G IV + 
Sbjct: 176 PLSEIDSKQKVREIAKENNFPNWNKRSSRGICFIGKRNFYSFISKYVD--SKKGSIVDIE 233

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRES----LEVHRI 303
           N + LG+H G+  Y++ QR+G  V+   E  +V   D+N+S + V    +    L+ +  
Sbjct: 234 NQKYLGQHQGLCYYSMNQRKGQLVSGQKEKYYVCGRDENNSTLFVCGESNRDKYLKKNYC 293

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362
               I+W+G          G K  +K + +   +   +++ N   V +  E S    + G
Sbjct: 294 VADNIHWIG-----TPPEIGRKILLKFKHTPRFISGTIKKINSKEVEISHE-SCFSTSPG 347

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q  VFY+ D  +   LG GI   S
Sbjct: 348 QYIVFYSLD--KKICLGSGIFKTS 369


>gi|301629819|ref|XP_002944031.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial
           [Xenopus (Silurana) tropicalis]
          Length = 292

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 143/300 (47%), Gaps = 30/300 (10%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           F   Y AG TP P V CN  +KF   L     LGA+ +ATGHY R R    D G     +
Sbjct: 1   FLREYQAGRTPNPDVLCNAEIKFKAFLDHAFTLGAEKIATGHYARVRQNA-DTGLFE--L 57

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
            + +D  +DQSYFL    Q QL    FP+G+++K  VR +A E+GL  A K DS  ICF+
Sbjct: 58  LKGLDPAKDQSYFLHRLNQAQLAKTLFPVGELRKTEVRRIAEEIGLPNARKKDSTGICFI 117

Query: 224 QQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGV---------- 272
            +  +   + R    I+ E G I+   G+ LGRH G+  YT+GQR+GLG+          
Sbjct: 118 GERPFRAFLNRY---ISKEPGPILDDRGRKLGRHVGLSFYTLGQRQGLGIGGVKEQGAAR 174

Query: 273 AMGE--PLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327
             GE  P FV    LDKN  RV+ G     L  H +  ++ +W        A   G    
Sbjct: 175 GAGEHAPWFVARKELDKNVLRVVQGHDHPWLLSHHLMAQDTSWCAG----HAPAPGAYAA 230

Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                 QD V       D G  + F +++  V  GQ+ V Y  +      LGGG+I+ ++
Sbjct: 231 KTRYRQQDAVCQLQAVPDGGFALQFPEAQWAVTPGQSAVLYDGEV----CLGGGVIATAQ 286


>gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 355

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 169/358 (47%), Gaps = 20/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L      +       C A +D+  A  + 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIRIGRDDTDYMDCSAEEDLEMASAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +S  V D    + + V          G TP P V CN+ +KF       RQ+G   
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKIRRGLTPNPDVMCNKLIKFG---CFERQVGREF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY  + L    DGK    +   +D  +DQ+ FL      Q+  L FPLG + K+
Sbjct: 115 DFTATGHYATTVLL---DGKT--WLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A   GL  A + DSQ ICF+ +  Y D V+R       EGDI+ L  G+ LG+H 
Sbjct: 170 EVRDIALRAGLPSARRRDSQGICFLGKINYNDFVRRFLG--EREGDIIELETGKKLGKHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V      E+   +   +R+ +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDIEGNVIYVSRGYDTELQFGNEFRMRDFHFITDN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            ++       +   KIR + + +   + R  +G  +  ++   G+A GQ  V Y S S
Sbjct: 287 PWKKEENGAVEVTFKIRHTPEFMKGRLFREPEGYRIVSDEKLQGIAPGQFGVIYDSAS 344


>gi|150951311|ref|XP_001387616.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149388488|gb|EAZ63593.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 356

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 185/376 (49%), Gaps = 43/376 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MS GVDSSV A +  +   +V G+ +       A+  + + C  +D  D ++VC  + + 
Sbjct: 1   MSSGVDSSVAAGIYAKKYKNVRGIYM-------ANWSQTAKCTERDWNDVQKVCHDLKIP 53

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD---VLA 142
               ++E+ + N V  P  + Y  G TP P   CN+ VKF  ++  +T +   D    L 
Sbjct: 54  CERVNFEKEYWNDVFQPMLNMYEKGLTPNPDTGCNKYVKFGCMIDHLTAKFPRDKKWWLV 113

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  L+       +  + R    ++DQSY+L +  Q+ L  +  P+G   K  VR+
Sbjct: 114 TGHYARVMLH---QPSGQYHLLRAYSKDKDQSYYLSSIPQEALSRVLMPIGHYVKPDVRE 170

Query: 203 LAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259
           LA+E+ L ++ K DSQ +CFV  +Q  + D    +N  I    G+IV  +G++ G+H G+
Sbjct: 171 LAKELNLHVSSKPDSQGLCFVSQEQNSFRDF---LNDYIEPNPGNIVTEDGKVWGKHQGL 227

Query: 260 INYTIGQRRGLGVAMGEPLF--VVYL-DKN---SSRVIVGPRESLEVHRIYLREIN---- 309
            + TIGQ+  + +  G+P +  V ++ +KN   +  VIV  R++    ++Y +E+N    
Sbjct: 228 WHATIGQKSSISMPQGDPQYKGVWFVSEKNFETNELVIVRGRDNP---KLYKQEVNVDDF 284

Query: 310 -WLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367
            W+     + +    F    + RS Q P+ V  + R      +   +    +A GQ  V 
Sbjct: 285 QWMNSDNSDSSSEITF----QYRSLQTPIKVESMARKGANYTIKLAEKVRALAPGQNVVL 340

Query: 368 YTSDSNEARVLGGGII 383
           Y  +    +VLG G+I
Sbjct: 341 YRGN----QVLGSGVI 352


>gi|195469645|ref|XP_002099747.1| GE16655 [Drosophila yakuba]
 gi|194187271|gb|EDX00855.1| GE16655 [Drosophila yakuba]
          Length = 388

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 174/369 (47%), Gaps = 33/369 (8%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G++V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAERGFNVLGVFMRNWDE---VDEMGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL        LG D +ATGHY R+
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129

Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
            L      +  + + R ++  P D  +DQ++FL    Q+ L    FPLGD +K  V++LA
Sbjct: 130 SLGNFLEGIASNNEARLLI--PADTFKDQTFFLAGIPQKALQRTMFPLGDFQKSQVKELA 187

Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260
           +++GL  +A+K +S  ICFV +  + D ++       G  L+ D    +G ++G H GI 
Sbjct: 188 KKIGLQRLANKKESTGICFVGKRNFKDFIQEYITSKTGPFLDID----SGAVVGHHEGIH 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314
            +T+GQR  L   + +P FV   +  S+ + V       +L    I +   NWL      
Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQR 302

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDS- 372
           +  D       C  + + ++  V   ++ + ++  +V+ E     +  GQ  VFY+  + 
Sbjct: 303 ILAD--TGSLSCRFRFQHTKPLVGCHLRLSPENSFHVELEAPLRAITPGQYAVFYSDTAC 360

Query: 373 -NEARVLGG 380
              AR+L  
Sbjct: 361 LGSARILSA 369


>gi|194226979|ref|XP_001488715.2| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 [Equus caballus]
          Length = 527

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 181/403 (44%), Gaps = 52/403 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           P+   V  A+ GG   + V+A           GY V GV ++ ++S       G C A +
Sbjct: 102 PEPGPVSRALKGGGRGAEVSARPSSPSARPSRGYQVTGVFMKNWDS---LDEHGVCTADK 158

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA RVC  +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS    
Sbjct: 159 DCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFR 218

Query: 132 VTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER------------------- 171
                LGAD +ATGHY R+ L   D+  +++ + RP  L R                   
Sbjct: 219 YALDNLGADAVATGHYARTSLE-DDEVFQQKHVKRPEGLFRNRFEVRNAVKLLQAADSFK 277

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD 230
           DQ++FL   +Q  L    FPLG + K+ V+ +A E  L  +  K +S  ICFV +  + +
Sbjct: 278 DQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFEN 337

Query: 231 VV-----KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
            +      R    I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D 
Sbjct: 338 FILQYLQPRPGKFISIE------DNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDG 390

Query: 286 NSSRVIVGPR-ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFV 341
               V V P+ +   ++R  LR   ++W+ +      V D   +C  + R     VP  +
Sbjct: 391 AKGDVFVAPQTDHPALYRDLLRTSRVHWIAEEPPATLVRDKMMECHFRFRHQMALVPCVL 450

Query: 342 QRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             N DG V+V   K    +  GQ  VFY  D      LG G I
Sbjct: 451 TLNQDGTVWVTAVKPVRALTLGQFAVFYKGDE----CLGSGKI 489


>gi|291414311|ref|XP_002723404.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase-like [Oryctolagus cuniculus]
          Length = 490

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 170/375 (45%), Gaps = 52/375 (13%)

Query: 43  DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
           +GY V GV ++ ++        G C A +D  DA RVC  +++  +   Y + + N V  
Sbjct: 100 EGYQVTGVFMKNWDQ---LDEHGVCTADRDCEDAYRVCQILDIPFHQVSYMKEYWNDVFS 156

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
            F + Y  G TP P + CNR +KF   L      LGAD +ATGHY R+ L   ++  +++
Sbjct: 157 DFLNEYEKGRTPNPDIVCNRHIKFGCFLRYAVDNLGADAVATGHYARTSL-EDEEVFQQK 215

Query: 162 IMCRPMDLER-------------------DQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            + RP  L R                   DQ++FL   +Q  L    FPLG + K  V+ 
Sbjct: 216 YIKRPEGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQPALRRTIFPLGGLTKPFVKK 275

Query: 203 LAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQILGRH 256
           +A E  L  +  K +S  ICFV +  +   +      R    I++E      + Q+LG H
Sbjct: 276 IAAENRLHHVLQKKESMGICFVGKRNFEHFILQYLQPRPGKFISIE------DNQVLGTH 329

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD 313
            G   YT+GQR  +   + EP FVV  D     V V PR +   ++R  LR   ++W+ +
Sbjct: 330 KGWFLYTLGQRAKIS-GLREPWFVVDKDGAKGDVFVAPRTDHPALYRDLLRTNRVHWIAE 388

Query: 314 ----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                L  D +++   C  + R     VP  +  N DG V+V   K+   +  GQ  VFY
Sbjct: 389 EPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALTPGQFAVFY 445

Query: 369 TSDSNEARVLGGGII 383
             D      LG G I
Sbjct: 446 KGDE----CLGSGKI 456


>gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella multiformis DSM 16608]
 gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella multiformis DSM 16608]
          Length = 360

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 171/375 (45%), Gaps = 31/375 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           KD R+ V +SGGVDSSVV   L R     +G+    +  R     K +  C + +D+  A
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYELAR-----LGLHPDCFYIRIGPEEKEEWDCSSEEDMEMA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V         + D  + + N V         AG TP P V CNR +KF          
Sbjct: 62  TAVAHRFGCRLQIVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFG-AFDEKMGH 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +
Sbjct: 121 GYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAVFPIGHYE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K+ VR +A +  L  A + DSQ ICF+    Y + V+R        GDI+ L  G+ +G 
Sbjct: 176 KDEVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYLG--EQPGDIIELETGKKIGE 233

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           H G+  +TIGQR+GLG+  G P FVV  D   + + V      E+       L + ++L 
Sbjct: 234 HRGLWFHTIGQRKGLGLGGG-PWFVVRKDVVQNILYVSHGYDPETAYKSDFPLHDFHYLT 292

Query: 313 DGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYT 369
           +G      V G   K   KIR + +  P  V++  DG  +      + GVA GQ CV Y 
Sbjct: 293 EG------VTGLPEKITFKIRHTPEYHPATVEQLPDGKSIIHSAEPIHGVAPGQFCVVY- 345

Query: 370 SDSNEARVLGGGIIS 384
            D    R  G G I+
Sbjct: 346 -DECHHRCYGSGEIA 359


>gi|329954341|ref|ZP_08295433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328527609|gb|EGF54602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 365

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 173/369 (46%), Gaps = 23/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L      K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGKDDADYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF       +Q+G D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIEKVRRGFTPNPDVMCNKLIKFG---CFEQQVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DFTATGHYATTVLRNG-----KTWLGTALDPIKDQTDFLAQIDYLQVSKLMFPLGGLMKR 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A +  L  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ILG H 
Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLG--EKEGRIVELETGKILGAHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D + + + V      E+   H   +++ +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVRKDTDENVIYVSRGYDTELQYGHEFGMQDFHFITEN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +E  V +      KIR + + +   + R++ G  +  E+   G+A GQ  V Y  D   
Sbjct: 287 PWE-GVKEAIPVTFKIRHTPEFIRGKLLRDETGCLIVSEEKLQGIAPGQFGVVY--DEAA 343

Query: 375 ARVLGGGII 383
              +G G I
Sbjct: 344 KLCIGSGEI 352


>gi|194768511|ref|XP_001966355.1| GF22123 [Drosophila ananassae]
 gi|190617119|gb|EDV32643.1| GF22123 [Drosophila ananassae]
          Length = 388

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 174/364 (47%), Gaps = 26/364 (7%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LLK  GY V+GV ++ ++    +   G C    D+ DA   C  + V     +
Sbjct: 14  DSAVTAHLLKERGYSVLGVFMRNWDEFDEA---GRCSGEADLKDAEWACRRLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL        L  D +ATGHY R+
Sbjct: 71  YVREYWTAVFSQFLEDYQQGLTPNPDILCNRHIKF-DLFHRHCLESLNYDAVATGHYARN 129

Query: 150 RL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
            L        G + + R ++  P D  +DQ++FL    ++ L    FPLGD+ K  V+ L
Sbjct: 130 SLGNFLEKATGAEEEARLLI--PADTFKDQTFFLAGIARKALQRTMFPLGDLHKAEVKQL 187

Query: 204 AREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIIN 261
           A ++GL  +A K +S  ICFV +  + D ++      + +G  V ++ G ++G H GI  
Sbjct: 188 AAKIGLQRLASKRESTGICFVGKRNFKDFIREYIT--SRDGHFVDVDSGAVVGNHEGIHQ 245

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           +T+GQR  L   + +P FV   + +S+ + V       +L   R+++   NWL       
Sbjct: 246 WTVGQRCRLSSFL-QPYFVARKEASSNTIYVAAGHDHPALLSTRMHIDPPNWLCGESQRR 304

Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSDSNE 374
              +G  +C  + + ++  V   V+ +    + V+ +     +  GQ  VFY  T+    
Sbjct: 305 CFSEGVLRCRFRFQHTKPLVDCCVRLSPANQFQVELDAPLRAITPGQYAVFYDETACLGS 364

Query: 375 ARVL 378
           AR+L
Sbjct: 365 ARIL 368


>gi|239906368|ref|YP_002953109.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus
           RS-1]
 gi|239796234|dbj|BAH75223.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus
           RS-1]
          Length = 356

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 162/364 (44%), Gaps = 22/364 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGG DS +   LL+  G+DV  +          +       A  +  DA+  C
Sbjct: 1   MRIAVAVSGGSDSLLALGLLRAAGHDVTALHAHFLPPGDKA------LALAEAIDAQ--C 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V     D  + FR  VI PFA++YAAG TP PC  CNR +KF  LL      GA+ 
Sbjct: 53  RALGVPFAAVDLSQEFRARVIAPFAAAYAAGRTPNPCAACNRDMKFGLLLDAALARGAEA 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGH+ R +            + R  D  RDQSYFL     + L    FPL   +K   
Sbjct: 113 IATGHFARVQ-----QTPTGPALFRGADDSRDQSYFLSLVPGKSLARAVFPLAGRRKAEH 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
                E+ L     S+S++ICFV    Y   ++     ++  G IV  +   LG H G+ 
Sbjct: 168 PAALAELLLTPPLPSESREICFVPGDDYRAFLQGEGFPLSGPGPIVLADSTRLGTHQGLW 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +TIGQR+GLG+A  EPL+V+  D  ++ +IVG +  L          N L         
Sbjct: 228 RHTIGQRKGLGIAYSEPLYVIDKDPAANALIVGVKAELAATLCRTGPANCLVQPEHWPEA 287

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V    C+        P P   +   + G+ + F         GQ  V Y +D    RVL 
Sbjct: 288 VLAQTCY-----RMKPRPATARLTAEGGLDITFADPVARPTPGQVAVLYDADG---RVLA 339

Query: 380 GGII 383
           GG I
Sbjct: 340 GGEI 343


>gi|300726991|ref|ZP_07060411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bryantii B14]
 gi|299775714|gb|EFI72304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bryantii B14]
          Length = 361

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 175/373 (46%), Gaps = 27/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD ++ V +SGGVDSSVV       G       +++       + +  C + +D+  A  
Sbjct: 8   KDKKIAVLLSGGVDSSVVVYEFASHGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + N V         +G TP P V CNR +KF    +   ++G 
Sbjct: 65  VAARFGCKLQVIDCHKEYWNQVTKYTMDKVKSGFTPNPDVMCNRLIKFG---AFDEKMGH 121

Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D  ++ATGHY ++ +  G    ++ ++  P D  +DQ+ FL    Q QL    FP+G   
Sbjct: 122 DYDLIATGHYAQTEIIDG----KKWLVTSP-DPVKDQTDFLAQIYQWQLKKAIFPIGHHI 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K+ +R++A    L  A + DSQ ICF+    Y + V+R       +G+++    G+ +G 
Sbjct: 177 KDEIREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLG--EKKGNVIEFETGKKIGE 234

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           H G+  +TIGQR+GLG+  G P FVV  D   + + V      E+       + + ++L 
Sbjct: 235 HKGLWFHTIGQRKGLGLGGG-PWFVVKKDIEKNILYVSHGYDPETAYKQDFKIHDFDFLT 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSD 371
           +G+ E      F    KIR + +  P  V+ N DG +      ++ GVA GQ CV Y  D
Sbjct: 294 EGITELPARVTF----KIRHTPEYHPASVEVNGDGTFTIHSDEKIHGVAPGQFCVIY--D 347

Query: 372 SNEARVLGGGIIS 384
               R  G G I+
Sbjct: 348 EQHHRCYGSGEIT 360


>gi|313157065|gb|EFR56495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alistipes sp. HGB5]
          Length = 438

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 109/201 (54%), Gaps = 1/201 (0%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+ +SGGVDSSV A LLKR G+DV G+ +  ++    +  +G C    D   A  V   
Sbjct: 4   VVIGLSGGVDSSVAAYLLKRQGHDVTGLFMINWHDTTGTL-EGDCPWHDDRVFAELVAKR 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++   V D    +R  V+    + Y  G TP P V CNR +KF   L    +LGAD +A
Sbjct: 63  LDIPLRVVDLSADYRTRVVDYMFAEYEKGRTPNPDVLCNREIKFDVFLREALKLGADFVA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    V  DG+    +    D  +DQSYFL   +Q+QL    FP+GD+ K  VR 
Sbjct: 123 TGHYCRKAEEVLPDGRTVFKLLAGADPNKDQSYFLCQLSQEQLRYALFPIGDLLKPEVRR 182

Query: 203 LAREMGLDIADKSDSQDICFV 223
           +A + GL  A + DSQ ICFV
Sbjct: 183 IAAKQGLATAKRKDSQGICFV 203



 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 249 NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G+ +G HNG   YTIGQR+GLG+    E LF++  D   + + VG     P        
Sbjct: 301 DGKKIGEHNGAHFYTIGQRKGLGIGGRRESLFILATDTAQNVIYVGEGDAHPGLWRPALH 360

Query: 303 IYLREINWLGDG-LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
           I   EI+W+             F   ++ R       +F++  D G Y+ F++ + G+  
Sbjct: 361 IAPGEIHWVNPARALSPGQSARFSVRIRYRQPLQDATLFMR--DRGAYILFDQPQRGITP 418

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ   +Y  D     ++G G+IS
Sbjct: 419 GQFAAWYDGDE----LVGSGVIS 437


>gi|325189345|emb|CCA23865.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14]
 gi|325189563|emb|CCA24050.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14]
          Length = 439

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDAR 77
           K++ VV+ MSGGVDSSV A LLK+ G+ V GV ++ ++S  + +    CC   QD+ D +
Sbjct: 26  KNLHVVIGMSGGVDSSVAALLLKQQGHKVTGVYMKNWDS--SDEVGAQCCPQDQDLKDVQ 83

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VC  +++  +  ++   + N V  P    + AG TP P + CNR +KF + +     L 
Sbjct: 84  SVCKQLDIPIHTTNFVSSYWNTVFAPCLEGFEAGLTPNPDILCNREIKFKEFIRFADTLH 143

Query: 138 ADVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           ADV+ATGHY  ++     G   +  ++    +D  +DQ+YFL          + FPLG  
Sbjct: 144 ADVVATGHYALLKKAKSNGQSNEYHQLYAG-LDPLKDQTYFLSQVPGSSFSKVLFPLGSY 202

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILG 254
           +K  VR++A+   L  A K DS  +CF+ + ++   + + I        D+  L    L 
Sbjct: 203 RKAEVREIAKSHHLHTALKRDSVGLCFIGKRQFGPFINQYITPKYGFYYDVDRL--VRLK 260

Query: 255 RHNGIINYTIGQRRGL 270
            H G  + T+GQR  L
Sbjct: 261 AHKGFASCTVGQRASL 276


>gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella marshii DSM 16973]
 gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella marshii DSM 16973]
          Length = 382

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 170/369 (46%), Gaps = 19/369 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++ V +SGGVDSSVV   L R G       +++         +  C + +D+  A  V
Sbjct: 26  NRKIAVLLSGGVDSSVVLHELSRAGLQPDCFYIKI---GPEEHEEWDCSSEEDLEMAGAV 82

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                    V D  + + N V         AG TP P V CNR +KF       +    +
Sbjct: 83  AARYGCRLEVVDCHQEYWNQVTKYTLEKVKAGFTPNPDVMCNRLIKFG-AFDEKKGHEYE 141

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY ++ +  G     + ++  P D  +DQ+ FL      QL    FP+G  +KE 
Sbjct: 142 LIATGHYAQTEIIDG----HKWLVTSP-DPVKDQTDFLAQLYDWQLRKALFPIGHYRKEE 196

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A    L  A + DSQ ICF+ +  Y D ++R       EG++V L  G+ +G+H G
Sbjct: 197 VRQIAEREHLINAKRKDSQGICFLGKINYNDYIRRYLG--ENEGEVVELETGKCIGKHKG 254

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  +TIGQR GLG   G P + V   K+  R I+   +  E    Y R+   + D  F  
Sbjct: 255 LWFHTIGQRHGLGFGGG-PWYAV--RKDVKRNILYVSKGFEPATAYRRDFE-IADFHFLT 310

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377
             V+      KIR + +     +++  +G Y V  EK   GVA GQ CV Y  D    R 
Sbjct: 311 LPVEMEDVCFKIRHTPEYHKAKLEKRGNGAYTVHAEKPVQGVAPGQFCVVY--DEQHHRC 368

Query: 378 LGGGIISGS 386
            G G I+ S
Sbjct: 369 FGSGEIAWS 377


>gi|311254917|ref|XP_003126013.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Sus
           scrofa]
          Length = 415

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 171/371 (46%), Gaps = 46/371 (12%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103
           GY V GV ++ ++       +G C A +D  DA RVC  +++      Y + + + V   
Sbjct: 22  GYQVTGVFMKNWD---LLDERGVCAADKDCEDAYRVCQILDLXFRQVSYVKEYWHDVFSD 78

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162
           F + Y  G TP P + CN+ +KFS   +     LGAD +ATGHY R+     ++  R++ 
Sbjct: 79  FLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTS-QEDEEVFRQKH 137

Query: 163 MCRPMDLER-------------------DQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           + RP  L R                   DQ++FL   +Q  L    FPLG + K  V+ +
Sbjct: 138 IRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKKI 197

Query: 204 AREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQILGRHN 257
           A E  L  +  K +S  ICFV +  + D +      R    I++E      + ++LG H 
Sbjct: 198 AAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQPRPGKFISIE------DNKVLGTHK 251

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314
           G   YT+GQR  +G  + EP +VV  D  S  V+V PR +   ++R  LR   ++W+ + 
Sbjct: 252 GWFLYTLGQRAKIG-GLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEE 310

Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                V D    C  + R     VP  +  N DG V+V   ++   +A GQ  VFY  D 
Sbjct: 311 PPAALVRDKMMACHFRFRHQMALVPCVLTLNQDGTVWVTAVEAVRALALGQFAVFYKGDE 370

Query: 373 NEARVLGGGII 383
                LG G I
Sbjct: 371 ----CLGSGKI 377


>gi|134118155|ref|XP_772245.1| hypothetical protein CNBM0130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254856|gb|EAL17598.1| hypothetical protein CNBM0130 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 424

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 183/405 (45%), Gaps = 47/405 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----------------------LYNSRK 59
            V V MSGGVDS+    +L+     +  V ++                       Y S  
Sbjct: 11  HVTVGMSGGVDSATTLRILREFPIHLDVVFMRNWDPLLSESPPESSLSPSPISLAYPSGS 70

Query: 60  ASKRK---GSCCAGQDVYDARRVCDTINV---SHYVFDYEERFRNAVIVPFASSYAAGET 113
            S R+     C   +D  D  +V   + +   S  + D  + + + V  P    +  G T
Sbjct: 71  TSNREQNLSPCQWERDWNDVLKVATQVGIPKDSIKLVDLSKEYWSRVFEPAVGVWERGGT 130

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLER 171
           P P VDCNR +KF  LL    +     LATGHY R      +   G  R  + R +D  +
Sbjct: 131 PNPDVDCNREIKFGALLDALPKKDRHFLATGHYGRVAHAPLLSHPGPSR--LLRAVDQSK 188

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFD 230
           DQ+Y+L   T+QQL     PLG + K  VR LA   GL  A K +S  +CF+ ++GK+ D
Sbjct: 189 DQTYYLSQMTEQQLSRAILPLGSLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFGD 248

Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSS 288
            + +  +     G +V+L+G+ L  H G+  YTIGQR  +   + +P+FV    + +  +
Sbjct: 249 FISQYTS-PPESGYLVNLSGERLAEHKGLWYYTIGQRARVANQL-KPMFVAKKGVGEKGT 306

Query: 289 RVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVP--VFVQ 342
            ++V P      L    ++  + +W+      + +V +  K  +++R   +PV   + + 
Sbjct: 307 DILVVPGSDHPMLLCKSVHTSDFHWIHRTFPRELLVKEPEKVGIQVRHRMNPVGGRIVIG 366

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
            N   V V+F    VGV+ GQ    +    ++   LG G+I G+K
Sbjct: 367 GNVKDVTVEFNDPIVGVSPGQVVAIW----HDGWCLGSGVIDGTK 407


>gi|303236987|ref|ZP_07323562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella disiens FB035-09AN]
 gi|302482852|gb|EFL45872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella disiens FB035-09AN]
          Length = 376

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 178/388 (45%), Gaps = 41/388 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           KD R+ V +SGGVDSSVV     R     +G+T   +  R     K +  C + +DV  A
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYEFAR-----LGLTPDCFYIRIGPEEKEEWDCNSEEDVEMA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V      +  V D  + + + V         AG TP P V CNR +KF    +   + 
Sbjct: 62  TAVARRFGCTLKVIDCHKEYWSQVTKYTMDKVRAGFTPNPDVMCNRMIKFG---AFHEKC 118

Query: 137 GAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G D  ++ATGHY +++   G     ++ +C   D  +DQ+ FL      QL    FP+G 
Sbjct: 119 GKDYDLIATGHYAQTKWIEG-----KKWLCTSPDPVKDQTDFLAQIYDWQLKKAIFPIGH 173

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
            +K  VR++A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +
Sbjct: 174 YEKNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQV--GDVIELETGKKI 231

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLREIN 309
           G+H G+  +TIGQR+GLG   G P FVV  D  ++ ++V     P+ + +     + +++
Sbjct: 232 GQHKGLWFHTIGQRKGLGFGGG-PWFVVKKDVANNVLLVSHGYDPQTAYK-QEFKVHDLH 289

Query: 310 WLGDGLFEDAVVDGFKC--FVKIRSSQDPVPVFVQ-----------RNDDGVYVDFEKSE 356
           WL +    + V +  K   ++ IR      P F +             +    V  E+  
Sbjct: 290 WLTESPKNEVVENSEKPNNWIPIRFKIRHTPEFHKGYLEMISVEEGGKETEAMVHSEEKI 349

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
            GVA GQ CV Y  + N  R  G   I+
Sbjct: 350 HGVAPGQFCVIYDKEHN--RCFGSAEIT 375


>gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20]
          Length = 366

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 173/358 (48%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L      +       C A +D+  A  + 
Sbjct: 13  MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGRDDADYMDCSAEEDMEMASAIA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139
               +S  V D    + + V          G TP P V CN+ +KF       +++G D 
Sbjct: 70  RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFG---CFEQRVGKDF 126

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V ATGHY  + L    DGK    +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 127 DVTATGHYATTVL---RDGKT--WLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKN 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A   GL  A + DSQ ICF+ +  Y D V+R       EGDIV L  G+ LG+H 
Sbjct: 182 EVRDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLG--EREGDIVELETGRKLGKHR 239

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEV-HRIYLREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V  G   +L+  +   + + +++ D 
Sbjct: 240 GYWFHTIGQRKGLGLG-GGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDN 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            ++ A  +    F KIR + + V   +Q+  +G  +  E+   G+A GQ  V Y +D+
Sbjct: 299 PWKGAQEEVEVTF-KIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADA 355


>gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 368

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 171/377 (45%), Gaps = 25/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V + +SGGVDSSV   LL + GYDV    L+++   + +   G C    D    + VC+ 
Sbjct: 1   VALLLSGGVDSSVALNLLVQQGYDVTAFYLKIWLEDELA-HLGHCPWEDDYRVCQEVCEQ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +       +  +++ VI         G TP P + CN  VKF        Q   D +A
Sbjct: 60  AGIPLETVSLQNAYKSRVIAYTVHEAEQGRTPNPDIMCNSRVKFGCFYEAIDQREFDFVA 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           +GHY +    V D       + R  D  +DQSYFL   TQ QL  + FP+G ++K  VRD
Sbjct: 120 SGHYAQ---LVKDTETGSMRLLRAPDPIKDQSYFLCTLTQDQLQRVLFPIGHLQKSQVRD 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261
           LA E  L    + DSQ +CF+ + K FD    +  G    G IV    G ++G+H+G+  
Sbjct: 177 LADEFILPNRLRPDSQGLCFLGKVK-FDEFLAVYLGTR-PGPIVDAGTGDVVGQHHGVWY 234

Query: 262 YTIGQRRGLGVAMGE------PLFVVYLDKNSSRVIVGPRESLEV-----HRIYLREINW 310
           +T+GQR+G+G  +        P +VV  D     V    +   ++         +  I+W
Sbjct: 235 HTVGQRKGIGRVLDPLATSRGPWYVVAKDPGKDVVYCSNQYDEDIFTASRSEFAVENIHW 294

Query: 311 LGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVF 367
           +      + +  DG +  +KIR   D V   ++  +      V  +  + G+A GQ  VF
Sbjct: 295 IAGQAPPNLLKGDGGRFVMKIRHGPDLVKGTLRLTNTAGEGDVKLDSKDGGLAPGQYVVF 354

Query: 368 YTSDSNEARVLGGGIIS 384
           Y     +   LG G+IS
Sbjct: 355 Y----KDEECLGAGVIS 367


>gi|71003538|ref|XP_756435.1| hypothetical protein UM00288.1 [Ustilago maydis 521]
 gi|46096040|gb|EAK81273.1| hypothetical protein UM00288.1 [Ustilago maydis 521]
          Length = 484

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 176/381 (46%), Gaps = 33/381 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGS-----CCAGQ 71
           K  RVVVA+SGGVDSSV AALL +  +D+  V ++ +N    S R   GS     C   +
Sbjct: 83  KGERVVVALSGGVDSSVTAALLAQADFDLEAVFMRNWNELDESGRMQPGSGGASGCTWQR 142

Query: 72  DVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           D  D + VC  + N+   + D  + +   V  P    +  G TP P V CN+ +KF  L+
Sbjct: 143 DWQDVQSVCRHLGNIPVKMIDLSKEYWTQVFEPALQDWQQGTTPNPDVSCNKEIKFGALM 202

Query: 131 SVTRQLG-----ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
               + G        LATGHY         D + R ++ R  D  +DQ+Y+L +  + +L
Sbjct: 203 DRLIRTGDHGGSKSWLATGHYAHVAWQQQGD-RTRPMLMRAKDRSKDQTYYLSSVGEDKL 261

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKR-------INA 237
               FPL  + K  VR+LA++  L  A++ +S  ICF+  +G     V         +N 
Sbjct: 262 AHAHFPLAHLLKTQVRELAKKFQLPTAERRESMGICFIGTRGSNGGAVSNTQGFSTFLNG 321

Query: 238 GI-ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---G 293
            I +  GD+V  +G+++ +H G+   T+GQ   +  A  +  +V   D  +++++V    
Sbjct: 322 YIPSAPGDMVDESGRVVSKHCGLHTLTVGQGARIRGATSK-YYVAKKDIPNNKIVVVQGK 380

Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDG---FKCFVKIRSSQDPVPVFVQR---NDDG 347
               L   R+Y+R+I W+      +   DG        ++R  Q      V R     +G
Sbjct: 381 DHPMLLCTRLYVRDIEWIWREPPPELKYDGVGRVTLLAQVRHRQVESECVVSRFKQGKNG 440

Query: 348 VYVDFEKSEVGVASGQACVFY 368
             V F +  + VA GQ    +
Sbjct: 441 YVVQFTEPVLAVAPGQVLGLW 461


>gi|325989606|ref|YP_004249305.1| Trifunctional protein ribF/mnmA [Mycoplasma suis KI3806]
 gi|323574691|emb|CBZ40347.1| Trifunctional protein ribF/mnmA [Mycoplasma suis]
          Length = 369

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 188/379 (49%), Gaps = 27/379 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDAR 77
           + +VV+A+SGGVDSSV A LLK++GY V G+ +  ++S+         C    +D   A 
Sbjct: 6   EKKVVIALSGGVDSSVAALLLKKEGYKVFGIHMINWDSQLNELEMDKECESLSKDREYAE 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            +   + +  +V+++   + N V  PF S         P + CN  +KF  LLS V R  
Sbjct: 66  IIAQQLEIPFFVYNFTFEYWNYVFKPFISLLNKNLIGNPDILCNSAIKFGTLLSKVKRVF 125

Query: 137 GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G DV LATGHY +    +  +       C   + ++DQ+YFL   TQ QL ++ FPL ++
Sbjct: 126 GPDVLLATGHYAK---VISTENNVLLGTCS--NEQKDQTYFLSKLTQFQLREIIFPLSEI 180

Query: 196 -KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
             K+ VR++A+E      +K  S+ ICF+ +  ++  + +     + +G IV + N + L
Sbjct: 181 DSKQKVREIAKENNFPNWNKRSSRGICFIGKRNFYSFISKYVD--SKKGSIVDIENQKYL 238

Query: 254 GRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYLREI 308
           G+H G+  Y++ QR+G  V+   E  +V   D+N+S + V    +    L+ +      I
Sbjct: 239 GQHQGLCYYSMNQRKGQLVSGQKEKYYVCGRDENNSTLFVCGESNRDKYLKKNYCVADNI 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           +W+G          G +  +K + +   +   +++ N + V +  E S    + GQ  VF
Sbjct: 299 HWIG-----TPPEIGREILLKFKHTPRFISGTIKKINGEEVEISHE-SCFSTSPGQYIVF 352

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ D  +   LG G+   S
Sbjct: 353 YSLD--KKICLGSGVFKTS 369


>gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
 gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|156861805|gb|EDO55236.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
 gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 354

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 173/358 (48%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L      +       C A +D+  A  + 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGRDDADYMDCSAEEDMEMASAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139
               +S  V D    + + V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V ATGHY  + L    DGK    +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DVTATGHYATTVL---RDGKT--WLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A   GL  A + DSQ ICF+ +  Y D V+R       EGDIV L  G+ LG+H 
Sbjct: 170 EVRDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLG--EREGDIVELETGRKLGKHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEV-HRIYLREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V  G   +L+  +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            ++ A  +  +   KIR + + V   +Q+  +G  +  E+   G+A GQ  V Y +D+
Sbjct: 287 PWKGAQEE-VEVTFKIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADA 343


>gi|84995316|ref|XP_952380.1| trna methyl transferase [Theileria annulata strain Ankara]
 gi|65302541|emb|CAI74648.1| trna methyl transferase, putative [Theileria annulata]
          Length = 1070

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 166/355 (46%), Gaps = 50/355 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGGVDSS+   ++K  G+DV    L++      S   G  C+  D+  A  VC+
Sbjct: 298 RVAVLVSGGVDSSLALWIMKSRGFDVQAFHLKV---NDLSNGPG-LCSSNDISYAMEVCN 353

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V+ +V  + + +   ++      Y  GE P P + CN  +KF + L +    G D +
Sbjct: 354 ILRVTLHVLPFSQVYDKHILSDVLDDYRKGEVPNPDILCNSRIKFGEFLKMATDWGFDYV 413

Query: 142 ATGHY------------IRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQ 182
           ATGHY            I+S  Y+  DG        R + +C   D  +DQ+YFL    Q
Sbjct: 414 ATGHYATLCDDFFTKEQIKSPSYL--DGCTSINGYYRIKRLCLSTDTVKDQTYFLSRLNQ 471

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            Q+  L FP+G++ K  VRD A+ +GL   +K DS  +CF++     D+ + +   +   
Sbjct: 472 NQMSRLIFPIGNILKTQVRDFAKTVGLPTYNKKDSFGLCFLED---LDLSEYLTKTLGES 528

Query: 243 -GDIV-HLNGQILGRHNGIINYTIGQRRGLGVAMGE------PLFVVYLD--KNSSRVIV 292
            G IV +   +++G HNG+ N+TIGQ++ +   +        P +VV  D  KN+  V  
Sbjct: 529 RGPIVEYETNKVIGEHNGLYNFTIGQKKTINNYLNPKHVGNTPKYVVKKDIYKNTLYVSA 588

Query: 293 -----------GPRESLEVHRIYLREINWLG-DGLFEDAVVDGFKCFVKIRSSQD 335
                      G R S +V   +    ++       +  V D FK  VK+R + +
Sbjct: 589 SYNEDFFTNPRGIRSSFKVRDFFWNTPDYKDLINKVQSEVSDNFKFKVKLRHTPN 643


>gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 354

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 21/354 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L      K       C A +D+  A  + 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGKDDADYMDCAAEEDLEIASAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V D    + + V        + G TP P V CN+ +KF       R+ G D 
Sbjct: 58  RRYGLPLEVVDLHREYWDNVAAYAIDKISRGLTPNPDVMCNKLIKFG---CFERRAGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DFTATGHYATTVLQTG-----KIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A    L  A + DSQ ICF+ +  Y D V+R       EGDIV L  G+ +G+H 
Sbjct: 170 EVRDIALRAKLPSARRRDSQGICFLGKINYNDFVRRFLG--EREGDIVELETGKKIGKHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D + + V V    + E    +   +R+ +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVRKDVDGNVVYVSRGYNTEQQFGNEFCIRDFHFITDN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            + D V +  K   KIR + + +   + R + G ++  ++   G+A GQ  V Y
Sbjct: 287 PWGD-VENDIKVTFKIRHTPEFIKGRLLREEGGYHIVSDEKLQGIAPGQFGVVY 339


>gi|325854955|ref|ZP_08171671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola CRIS 18C-A]
 gi|325483933|gb|EGC86873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola CRIS 18C-A]
          Length = 360

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 173/372 (46%), Gaps = 31/372 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           R+ V +SGGVDSSVV     R     +G+    +  R     K +  C + +D+  A  V
Sbjct: 10  RIAVLLSGGVDSSVVVYEFAR-----LGLHPDCFYIRIGPEEKEEWDCNSEEDMEMATAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                    V D  + + N V         AG TP P V CNR +KF    +   ++G D
Sbjct: 65  ARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGHD 121

Query: 140 --VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K
Sbjct: 122 YDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYEK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256
           + VR +A    L  A + DSQ ICF+    Y + V+R        GDI+ L  G+ +G H
Sbjct: 177 DEVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVRRYLG--EQTGDIIELETGKKIGEH 234

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREINWLGD 313
            G+  +TIGQR+GLG+  G P FVV   +DKN   V  G   E+       L + ++L +
Sbjct: 235 RGLWFHTIGQRKGLGLGGG-PWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHFLTE 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372
           G+ E       K   KIR + +  P  V++  DG  +      + GVA GQ CV Y  D 
Sbjct: 294 GITELPE----KITFKIRHTPEYHPARVEQLPDGKCIIHSAGRIHGVAPGQFCVVY--DE 347

Query: 373 NEARVLGGGIIS 384
           +  R  G G I+
Sbjct: 348 HHHRCYGSGEIT 359


>gi|224093431|ref|XP_002187736.1| PREDICTED: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 [Taeniopygia guttata]
          Length = 556

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 171/383 (44%), Gaps = 44/383 (11%)

Query: 35  VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEE 94
           VV      +GY V GV ++ ++       +G+C   +D  DA RVC  +++  +   Y +
Sbjct: 152 VVTPSSNSEGYQVTGVFMKNWDPLD---EQGACSIDRDCEDAYRVCQKLDIPFHQVSYVK 208

Query: 95  RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRL-- 151
            + N V       Y  G TP P + CN+ +KF+  L      LGAD +ATGHY R+ L  
Sbjct: 209 EYWNEVFSDLLKEYELGRTPNPDILCNKHIKFNYFLHYAVDNLGADAIATGHYARTSLED 268

Query: 152 ---YVGDDGKRRRIMCR-------------PMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              +     KR + + R               DL +DQ++FL   +Q  L    FPLGD+
Sbjct: 269 EEVFHQKHTKRPQRLLRIRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDL 328

Query: 196 KKESVRDLAREMGLDIADKS---------DSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            K  V+ +A E  L    K           S  +CF+ +  + + +  +       G+ V
Sbjct: 329 TKSFVKKIAAEHDLHHVLKKKEACSMFLFQSMGVCFIGERNFENFL--LEYLEPQPGNFV 386

Query: 247 HL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLEVHRIY 304
            + + +++GRH G   +TIGQR  L   + +  FVV  D ++  V V P R+   ++R  
Sbjct: 387 SIEDKKVMGRHKGWFLFTIGQRARLA-GLKDAWFVVDKDVSTGNVFVAPTRDHPALYRDL 445

Query: 305 LR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
           LR   ++W+ +    + V +   +C  + R     VP  +  N DG V+V   K    + 
Sbjct: 446 LRTNRVHWIAEEPPAELVREKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARAIT 505

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ  VFY  D      LG G I
Sbjct: 506 PGQFAVFYKGDE----CLGSGKI 524


>gi|298526491|ref|ZP_07013900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298496285|gb|EFI31579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 94_M4241A]
          Length = 286

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 142/290 (48%), Gaps = 23/290 (7%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           F SSYAAG    PCV CN+ +KF+ L   ++  G      GH   +       G R   +
Sbjct: 4   FVSSYAAGGNSEPCVRCNQQIKFAAL---SQGCGVGFRYGGHRATT------PGCRVGRL 54

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
            R +D ++DQSY L   T QQL    FP+GD  K  +R  A   GL +A+K DS DICF+
Sbjct: 55  RRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEAARRGLAVANKPDSHDICFI 114

Query: 224 QQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEP 277
             G  K F + +RI       G +V  +G +L  H+G+  +TIGQRRGLG+A     G P
Sbjct: 115 PSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRP 170

Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337
            +V  +D +++ V VG    L+V  +  R   +   G      VD   C V++R+  + V
Sbjct: 171 RYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPSGPVD---CVVQVRAHGETV 226

Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
               +   D ++V       GVA GQ  V Y  D     VLG   I+G+ 
Sbjct: 227 SAVAELIGDALFVQLHAPLCGVARGQTLVLYRPDPAGDEVLGSATIAGAS 276


>gi|215412875|ref|ZP_03421581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 94_M4241A]
          Length = 286

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 142/290 (48%), Gaps = 23/290 (7%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           F SSYAAG    PCV CN+ +KF+ L   ++  G      GH   +       G R   +
Sbjct: 4   FVSSYAAGGNSEPCVRCNQQIKFAAL---SQGCGVGFRYGGHRATT------PGCRVGRL 54

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
            R +D ++DQSY L   T QQL    FP+GD  K  +R  A   GL +A+K DS DICF+
Sbjct: 55  RRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEAARRGLAVANKPDSHDICFI 114

Query: 224 QQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEP 277
             G  K F + +RI       G +V  +G +L  H+G+  +TIGQRRGLG+A     G P
Sbjct: 115 PSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRP 170

Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337
            +V  +D +++ V VG    L+V  +  R   +   G      VD   C V++R+  + V
Sbjct: 171 RYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPSGPVD---CVVQVRAHGETV 226

Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
               +   D ++V       GVA GQ  V Y  D     VLG   I+G+ 
Sbjct: 227 SAVAELIGDALFVQLHAPLCGVARGQTLVLYRPDPAGDEVLGSATIAGAS 276


>gi|194912221|ref|XP_001982459.1| GG12823 [Drosophila erecta]
 gi|190648135|gb|EDV45428.1| GG12823 [Drosophila erecta]
          Length = 411

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 179/396 (45%), Gaps = 36/396 (9%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G++V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAERGFNVLGVFMRNWDEMD---EVGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL        LG D +ATGHY  +
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYAGN 129

Query: 150 RL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
            L         +D  R  I   P D  +DQ++FL     + L    FPLGD +K  V+DL
Sbjct: 130 SLGNFLEGTASNDEARLLI---PADTFKDQTFFLAGIPHKALQRTMFPLGDWQKSQVKDL 186

Query: 204 AREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGI 259
           A+++GL  +A+K +S  ICFV +  + D ++       G  L+ D    +G ++G H GI
Sbjct: 187 AKKIGLQRLANKKESTGICFVGKRNFKDFIQEYIVSKTGPFLDID----SGAVVGHHEGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GD 313
             +T+GQR  L   + +P FV   +  S+ + V       +L    I +   NWL     
Sbjct: 243 HQWTVGQRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQ 301

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY--TS 370
            +  D      +C  + + ++  V   ++    +  +V+ +     +  GQ  VFY  T+
Sbjct: 302 KMLSD--TGSLRCRFRFQHTKPLVVCHLKISPSNSFHVELDAPLRAITPGQYAVFYNDTA 359

Query: 371 DSNEARVLGGGIISG-SKRSDAVEESLLSVIGDEFP 405
               AR+L    +   ++   A   +L+S    E P
Sbjct: 360 CLGSARILSANPLKKDAQTQQAHAANLVSSSTGEIP 395


>gi|307179503|gb|EFN67817.1| Thioredoxin domain-containing protein 4 [Camponotus floridanus]
          Length = 759

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 168/368 (45%), Gaps = 42/368 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDS+V A LLK  G++V GV ++ ++ R  +   G+C   +D  DAR +CD 
Sbjct: 5   VAVGISGGVDSAVTALLLKNKGFNVTGVFMKNWDIRDET---GNCTVEKDYEDARWICDK 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D+ + + N V       Y  G TP P + CN+ +KF+    V         A
Sbjct: 62  LKIPLIQLDFVKEYWNEVFSDLLEKYQTGYTPNPDILCNKNIKFNKFFDV---------A 112

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
             H +++                  D  +DQ++FL    QQ L    FPLG+  K  V+ 
Sbjct: 113 HVHLLQA-----------------YDSNKDQTFFLNQIPQQTLRRCMFPLGNYLKNHVKT 155

Query: 203 LAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260
           +A+E  L  IA K +S  ICFV + ++ D +          G+ V L+ G  +G+HNGI 
Sbjct: 156 IAKEASLHKIAQKKESMGICFVGKREFQDFISEYIDDKP--GEYVDLDSGLSIGKHNGIH 213

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFE 317
             TIGQR  +G       +V   D+ ++ +I    G   +L    +  ++++W+ +   E
Sbjct: 214 KLTIGQRCRIG-GCENAYYVFSKDQKTNTIIAVDSGIHPALYTDFLITQDVHWISEEPHE 272

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C  + +     +   V + +D+ +++        +  GQ  V Y+ +     
Sbjct: 273 LRHSGVLSCDFRFQHRNPLITCNVYKISDNRLFIRLSVPLRAITKGQYAVLYSGE----E 328

Query: 377 VLGGGIIS 384
            LGG IIS
Sbjct: 329 CLGGSIIS 336


>gi|157109170|ref|XP_001650555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|157109172|ref|XP_001650556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|157109174|ref|XP_001650557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108868469|gb|EAT32694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108868470|gb|EAT32695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108868471|gb|EAT32696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
          Length = 377

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 193/377 (51%), Gaps = 28/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A +LK+ G+DV G  ++ ++        G C   QD  DA+++C 
Sbjct: 4   RVVVGVSGGVDSAVTAYMLKQKGFDVRGAFMKNWD---LIDEAGYCSGEQDWLDAQKLCR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +     ++ + +   V   F   Y  G TP P + CNR +KF+      R+ +GAD 
Sbjct: 61  QLRIPLEQINFVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADA 120

Query: 141 LATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           +ATGHY R+     L   D+    R++    D+ +DQ++FL   + + L    FP+G M 
Sbjct: 121 IATGHYARTNFGPFLEKYDEHGSIRLLAGVDDI-KDQTFFLSQISAEALRRTMFPIGAMT 179

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN-GQIL 253
           K  V+  A E+GL+  A K +S  ICFV +  + D + + I+      GD V  + G+++
Sbjct: 180 KAQVKQYAAEVGLEAFARKKESMGICFVGKRSFQDFIAEYIDTK---PGDFVDFDTGKVV 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVH-RIYLREINW 310
           G H G+ ++T+GQ+  +G  + +P FV   D N + + V  G    L V   +Y+    W
Sbjct: 237 GTHKGLHHWTVGQKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVW 295

Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPV-FVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +      D + DG F+C  + + ++  V    ++ ++DG  ++V  ++    +  GQ  V
Sbjct: 296 INK---PDRLADGVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAV 352

Query: 367 FYTSDS--NEARVLGGG 381
           FY  +     AR++  G
Sbjct: 353 FYKDEECFGSARIVKPG 369


>gi|330955382|gb|EGH55642.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7]
          Length = 177

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 8/183 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174

Query: 202 DLA 204
            +A
Sbjct: 175 AIA 177


>gi|157117360|ref|XP_001658729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108876095|gb|EAT40320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
          Length = 377

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 193/377 (51%), Gaps = 28/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A +LK+ G+DV G  ++ ++        G C   QD  DA+++C 
Sbjct: 4   RVVVGVSGGVDSAVTAYMLKQKGFDVRGACMKNWD---LIDEAGYCSGEQDWLDAQKLCR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +     ++ + +   V   F   Y  G TP P + CNR +KF+      R+ +GAD 
Sbjct: 61  QLRIPLEQINFVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADA 120

Query: 141 LATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           +ATGHY R+     L   D+    R++    D+ +DQ++FL   + + L    FP+G M 
Sbjct: 121 IATGHYARTNFGPFLEKYDEHGPIRLLAGVDDI-KDQTFFLSQISAEALRRTMFPIGAMT 179

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN-GQIL 253
           K  V+  A E+GL+  A K +S  ICFV +  + D + + I+      GD V  + G+++
Sbjct: 180 KAQVKQYAAEVGLEAFARKKESMGICFVGKRSFQDFIAEYIDTK---PGDFVDFDTGKVV 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVH-RIYLREINW 310
           G H G+ ++T+GQ+  +G  + +P FV   D N + + V  G    L V   +Y+    W
Sbjct: 237 GTHKGLHHWTVGQKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVW 295

Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPV-FVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +      D + DG F+C  + + ++  V    ++ ++DG  ++V  ++    +  GQ  V
Sbjct: 296 INK---PDRLADGVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAV 352

Query: 367 FYTSDS--NEARVLGGG 381
           FY  +     AR++  G
Sbjct: 353 FYKDEECFGSARIVKPG 369


>gi|167763337|ref|ZP_02435464.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
           43183]
 gi|167698631|gb|EDS15210.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
           43183]
          Length = 365

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 167/353 (47%), Gaps = 19/353 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   G+     +L      K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGHRP---SLFYIKIGKDDAEYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
               +S  V D    + + V        + G TP P V CN+ +KF      V R    D
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIEKVSRGFTPNPDVMCNKLIKFGCFEQRVGRHF--D 115

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ 
Sbjct: 116 FTATGHYATTVLQNG-----KTWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQE 170

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VRD+A +  L  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ILG H G
Sbjct: 171 VRDIALKAQLPSARRRDSQGICFLGRINYNDFVRRFLG--EKEGRIVELETGKILGTHRG 228

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGL 315
              +TIGQR+GLG++ G P FVV  D + + + V      E+   H   +++ +++ +  
Sbjct: 229 YWFHTIGQRKGLGLS-GGPWFVVRKDTDENVIYVSHGYDTELQYGHEFSMQDFHFITENP 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           +E  + D      KIR +   +   + +++ G  +  ++   G+A GQ  V Y
Sbjct: 288 WE-GIKDEIPVTFKIRHAPGFIGGRLWQDETGYRIVSDEKLQGIAPGQFGVVY 339


>gi|260591395|ref|ZP_05856853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella veroralis F0319]
 gi|260536761|gb|EEX19378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella veroralis F0319]
          Length = 360

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 173/373 (46%), Gaps = 27/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV     R G       +++       K +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEEWDCNSEEDLEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         AG TP P V CNR +KF    +   ++G 
Sbjct: 64  VAHRYGCKLQVIDCHKEYWDQVTSYTMEKVKAGFTPNPDVMCNRLIKFG---AFDAKMGH 120

Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D  ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G   
Sbjct: 121 DYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYA 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K  VR++A +  L  A + DSQ ICF+    Y + V+R        GDI+ L  G+ +G 
Sbjct: 176 KNEVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQV--GDIIELETGKKIGE 233

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWLG 312
           H G+  +TIGQR+GLG+  G P FVV  D  +N   V  G   +    + + L + ++L 
Sbjct: 234 HRGLWFHTIGQRKGLGLGGG-PWFVVKKDVAQNILYVSHGYDPATTYKKDFPLHDFHFLT 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +G+ E       K   KIR + +     V++  DG   +   +S  GVA GQ CV Y  D
Sbjct: 293 EGIKELPT----KVTFKIRHTPEYHTATVEQLSDGKCLIHSTESIHGVAPGQFCVIY--D 346

Query: 372 SNEARVLGGGIIS 384
               R  G G I+
Sbjct: 347 EQHHRCFGSGEIT 359


>gi|255087530|ref|XP_002505688.1| predicted protein [Micromonas sp. RCC299]
 gi|226520958|gb|ACO66946.1| predicted protein [Micromonas sp. RCC299]
          Length = 346

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 34/301 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGGVDS+V A LLK  G+DV GV ++ ++  +A +  G C   +D  DAR    
Sbjct: 3   RVAVGLSGGVDSAVTAWLLKSAGFDVTGVLMRNWD--EAEETGGECSFEKDQRDARAAAR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSY-AAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD 139
            + +     D+ + + ++V  PF   +   G TP P + CNR +KF  LL    R LGAD
Sbjct: 61  AVGIPLTEVDFVKEYWHSVFEPFLRDFDGGGATPNPDLACNRHIKFGALLDHCLRSLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LATGHY  +R+   D+    R++ R +D ++DQSYFL +   + L    FPLG + K  
Sbjct: 121 LLATGHY--ARIVRIDETNPPRLL-RGIDPDKDQSYFLASVRGESLERACFPLGGLTKRE 177

Query: 200 VRDLA---REMGLDIADKSDSQDICFVQQGKYF-DVVKRI-------------------N 236
           VR+LA     +   +  +  S  ICF+ + + F D ++                     +
Sbjct: 178 VRELAAGPANLPAAVTRRRSSAGICFIGRKRDFGDFIQEYLPAEGEMRADSSRGDRRGED 237

Query: 237 AGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK--NSSRVIVG 293
           +     G  V + +G+ +GRH G+  YT GQR  LG A   P +VV  D    S+ V V 
Sbjct: 238 SSRGASGSFVSVESGEAVGRHGGLARYTCGQRARLGGAS-VPWYVVGKDSRGGSNSVYVA 296

Query: 294 P 294
           P
Sbjct: 297 P 297


>gi|167753698|ref|ZP_02425825.1| hypothetical protein ALIPUT_01979 [Alistipes putredinis DSM 17216]
 gi|167658323|gb|EDS02453.1| hypothetical protein ALIPUT_01979 [Alistipes putredinis DSM 17216]
          Length = 339

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 171/371 (46%), Gaps = 43/371 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RV++  SGG+DS     LL+  GY V  +TL +       ++            AR 
Sbjct: 2   KDNRVLLGFSGGIDSFAAVGLLQAAGYHVTALTLDMRGDSALLEK------------ARL 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +   +    ERF   V+  F  SY  G TP PC  CN  +K+  L +    LG 
Sbjct: 50  RAGALGIPWRMRSVRERFEREVVDYFTDSYFRGCTPAPCTRCNSRIKWPCLAAEADALGI 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R     G     +R + R  D  +DQSY+L+   Q+ L  +  P+G + K 
Sbjct: 110 RHIATGHYFRITSAGG-----KRYVTRAADNRKDQSYYLWDLPQEILDRVLTPMGTVIKR 164

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257
           ++ +       ++AD+ +S  +CF++     D ++  +   AL  G I+   G  LG H+
Sbjct: 165 NIVE-------ELADRRESMGVCFLEGRPCRDFLRSRDKTEALRPGPIIDSAGHRLGTHD 217

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-----SLEVHRIYLREINWLG 312
           G   YTIGQ++GL +  G    VV +D  ++R++ G  +     +LEV    L E + + 
Sbjct: 218 GAALYTIGQKKGLDLPPG--WAVVAIDTAANRIVAGEEKLLLHRTLEVGECRLIESDEVF 275

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 AV+ G       R+ +    VF   +  G+ ++ E      A+GQ  V Y  + 
Sbjct: 276 GARDIRAVIRGIG-----RNPEGYAAVFPAAS--GIRIELEDPAWAPAAGQPVVLYRGE- 327

Query: 373 NEARVLGGGII 383
              RV+GGGI+
Sbjct: 328 ---RVVGGGIL 335


>gi|303281422|ref|XP_003060003.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458658|gb|EEH55955.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 311

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 147/295 (49%), Gaps = 32/295 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDS+V A +LKR GYDV+GV ++  N  +A +  G C   +D  DA  V  +
Sbjct: 1   IAVGISGGVDSAVTAWILKRAGYDVVGVLMR--NWDEAEETGGECAFEKDQRDAAAVARS 58

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
           + +     D+ + + +AV  PF   +  G  TP P + CNR +KF  LL      + ADV
Sbjct: 59  VGIELREVDFVKEYWHAVFQPFLRDFDGGASTPNPDLACNRHIKFGSLLKHCLLDVKADV 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMC--RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           L TGHY  +++  G +G    + C     D E+DQSYFL +  Q+ L +  FPLG + K 
Sbjct: 119 LCTGHY--AKIVRGPNG----VFCLHTAEDKEKDQSYFLASVKQEALRNACFPLGWLTKT 172

Query: 199 SVRDLA---REMGLDIADKSDSQDICFVQQGK--------YFDVVKRINAGIALEGDIVH 247
            VR +A    ++   +  +  S+ ICF+ + K        Y     R +   A + D   
Sbjct: 173 EVRAIAAGPAKLPSAVTSRRSSRGICFIGRKKNFGEFVHEYLPEEGRTSEASATDSDAAS 232

Query: 248 ------LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNS--SRVIVGP 294
                 ++G ++G H G+  YT GQ   +G A   P FVV  D  +  + V V P
Sbjct: 233 GAFVSVVDGAVVGAHKGLARYTCGQGARVGGASA-PWFVVGKDSRAGVTNVYVAP 286


>gi|195400843|ref|XP_002059025.1| GJ15215 [Drosophila virilis]
 gi|194141677|gb|EDW58094.1| GJ15215 [Drosophila virilis]
          Length = 363

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 23/284 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV MSGGVDS+V A LLK  GY+V+GV ++ ++    S   G C   QD+ DA   C  
Sbjct: 5   VVVGMSGGVDSAVSAHLLKERGYNVLGVFMRNWDEHDES---GRCSGEQDLKDAELACRH 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140
           + +     +Y +++  AV   F   Y  G TP P + CN+ +KF DL        L  D 
Sbjct: 62  LQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKF-DLFHRHALHTLQYDA 120

Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY R+ L     +          +  P D  +DQ++FL       L    FPLG +
Sbjct: 121 VATGHYARNSLGDFLEHSSSQTPEDVRLLIPADTFKDQTFFLAGIAHAALQRTMFPLGGL 180

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           KK  V+ LAR +GL  +A+K +S  ICFV +  +   ++       +     H      G
Sbjct: 181 KKTEVKQLARRIGLHRLAEKRESTGICFVGKRDFKAFIQEY-----ISSKPGHFVDVDSG 235

Query: 255 R----HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                H GI  +T+GQR  L   + +P FV   D  +S +I GP
Sbjct: 236 VVVGTHEGIHQWTVGQRCRLSSHL-QPYFVARKDA-ASNIIYGP 277


>gi|282878172|ref|ZP_06286968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccalis ATCC 35310]
 gi|281299590|gb|EFA91963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccalis ATCC 35310]
          Length = 360

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 170/369 (46%), Gaps = 21/369 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L + G       +++         +  C + +D+  A  
Sbjct: 9   KDKRIAVLLSGGVDSSVVVHELAQMGLHPDCFYIKI---GPEEAEEWDCSSEEDLEMATA 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL-LSVTRQLG 137
           V         V D  + + + V         AG TP P V CNR +KF      V  Q  
Sbjct: 66  VAAKYGCRLQVVDCHKEYWSEVTKYTMEKVKAGYTPNPDVMCNRLIKFGAFDAKVGHQY- 124

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D++ATGHY ++ +    DGK+  ++  P D  +DQ+ FL      QL    FP+G  +K
Sbjct: 125 -DLIATGHYAQTEVI---DGKKW-LVTSP-DPVKDQTDFLAQIYDWQLKKALFPIGHYQK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256
             VR++A    L  A + DSQ ICF+ Q  Y + ++R        GD++ L  G+ +G H
Sbjct: 179 NEVREIAEREHLVNAKRRDSQGICFLGQIDYNEYLRRYLG--EKHGDVIELETGKKIGEH 236

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+  +TIGQR GLG   G P FVV  D  ++ + V      +    Y  +   + D  F
Sbjct: 237 RGLWFHTIGQRHGLGFGGG-PWFVVKKDVQANVLYVS--RGYDPKTAYKSDFK-VHDFHF 292

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNEA 375
               +D      KIR + +  P  +++  +G Y+      + GVA GQ CV Y  D    
Sbjct: 293 LTEPLDMEHITFKIRHTPEYHPATIEKTAEGCYIVHAAQPIHGVAPGQFCVVY--DEQHH 350

Query: 376 RVLGGGIIS 384
           R +G   I+
Sbjct: 351 RCIGSAEIT 359


>gi|195564545|ref|XP_002105876.1| GD16539 [Drosophila simulans]
 gi|194203240|gb|EDX16816.1| GD16539 [Drosophila simulans]
          Length = 389

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 171/372 (45%), Gaps = 33/372 (8%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++    +   G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLSERGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL        LG D +ATGHY R+
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129

Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
            L      +  +   R ++  P D  +DQ++FL    ++ L    FPLGD +K  V+DLA
Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLA 187

Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260
           +++GL  +A K +S  ICFV +  + D ++       G  L+ D    +G ++G H GI 
Sbjct: 188 KKIGLQRLAKKKESTGICFVGKRNFKDFIQEYITSKHGPFLDID----SGAVVGHHEGIH 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314
            +T+GQR  L   + +P FV   +  S+ + V       +L    I +   NWL      
Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIDVDPPNWLCSKSQK 302

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSD 371
           +  D      +C  + + ++  V   +  +    + V+ +     +  GQ  VFY  T+ 
Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDDTAC 360

Query: 372 SNEARVLGGGII 383
              AR+L    I
Sbjct: 361 LGSARILSANPI 372


>gi|198426982|ref|XP_002121363.1| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 [Ciona intestinalis]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 187/404 (46%), Gaps = 40/404 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ A+SGGVDS+V A LLKR G +V+GV ++ ++        G C   +D   A RVC 
Sbjct: 3   KVICAISGGVDSAVAALLLKRRGLNVVGVFMRNWD---LEDEVGQCSVQEDATYATRVCR 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  Y  +  + +   V +P    Y  G TP P + CN+ VKFS   +  +   G  V
Sbjct: 60  ALDIPFYEVNLVKEYWTNVFMPMVDQYEMGNTPNPDILCNQLVKFSAFHNKCSSMFGNVV 119

Query: 141 LATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +ATGHY R+ L        V    ++R  + + +D  +DQ++FL    +  L    FPLG
Sbjct: 120 IATGHYARTTLNDRVLTAKVPHTAEQR--LLKAVDPFKDQTFFLHKVDRTALLRSYFPLG 177

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD-IVHLNGQ 251
            + K  V+++A    +  +  + +S  ICF+ + ++ + +K  N      G  I +  G 
Sbjct: 178 GIFKSKVKEIAAASEISFVLKRKESAGICFIGRREFSNFIK--NYISPKPGQFICYETGN 235

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREI- 308
           ++G H+G  +YT+GQR  +G   G  +    L +NS    V+V P   L    +Y + + 
Sbjct: 236 VIGNHDGYFSYTVGQRSLIG---GLRISYAVLHRNSKDGNVLVVP--GLNHPALYRKSLV 290

Query: 309 ----NWLGDGLFEDAVV---DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVA 360
               +W+     E A++       C+ +       VP  V Q  ++ + +  +     + 
Sbjct: 291 SGPAHWIAG---EPALLREGKPLNCYFRFCHRNSLVPCTVHQLENERLLIILQHPLRAMT 347

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
            GQ  V YT D      LGG  I     S    +S   ++ D F
Sbjct: 348 VGQDAVLYTED----ECLGGAQIDDVGPSMYESQSQDKIVFDTF 387


>gi|308811570|ref|XP_003083093.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116054971|emb|CAL57048.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 431

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 13/252 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS++ A  LKR G DV   T + ++       +  C    D+  A  +   
Sbjct: 58  VVVGLSGGVDSAIAAWALKRCGADVTAATTKNWDGLNEDANE-DCGYRDDLRSATEIARK 116

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADVL 141
           I +     D+   + N V  P+  ++A+G TP P ++CNR+VKF  LL  VT  +G D+L
Sbjct: 117 IGIPLTEIDFTREYWNDVFEPYVKAFASGATPNPDLECNRSVKFGALLRHVTDVMGGDLL 176

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    VG+   R R++ R +D  +DQSYFL + +   L    FPLG+M K   R
Sbjct: 177 ATGHYARIDRGVGE---RVRLL-RGVDETKDQSYFLASVSGDALSKACFPLGEMLKSETR 232

Query: 202 DLAREMGLDIADKSDSQDICFV----QQGKYF---DVVKRINAGIALEGDIVHLNGQILG 254
           + AR +GL  A++  S  ICF+    ++G+     DV  R     A    +VH       
Sbjct: 233 EAARALGLPCAERRSSAGICFIVHRPERGRVCGRRDVASRSGRAAAQGVGVVHGRSTREN 292

Query: 255 RHNGIINYTIGQ 266
           R      + IG+
Sbjct: 293 RRPAKPWFVIGK 304


>gi|213023505|ref|ZP_03337952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 238

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 13/211 (6%)

Query: 88  YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHY 146
           +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD +ATGHY
Sbjct: 5   HTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHY 64

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R R  V  +GK R  + R +D  +DQSYFL+    +Q+    FP+G+++K  VR +A +
Sbjct: 65  VR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAED 119

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  +G H G++ +T+GQ
Sbjct: 120 LGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLGQ 177

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIV 292
           R+GLG+        +P +VV  D  ++ +IV
Sbjct: 178 RKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 208


>gi|114320607|ref|YP_742290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311715|sp|Q0A8N7|MNMA_ALHEH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114227001|gb|ABI56800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 366

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 179/378 (47%), Gaps = 34/378 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VVV +SGGVDS+V A  L   G+ V G+ ++ +           C A +D+ +A+ 
Sbjct: 3   KTDKVVVGLSGGVDSAVAAMRLLEAGHHVEGLFMKNWEDDDTLTH---CAAEEDLAEAQA 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  +  ++  R+R  V       Y AG TP P + CN+ +KF   L     LGA
Sbjct: 60  VADHLGIRLHRANFAARYREQVFEVCLREYRAGRTPNPDILCNQRIKFRAFLDHALSLGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY      VG+ G R  ++ R  D  +DQSYFL+   Q QL    FPL ++ K 
Sbjct: 120 SKVATGHYAG----VGEQGGRFTLL-RGEDPHKDQSYFLYTLGQAQLRHSLFPLSELPKP 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL    + DS  ICF+ +  +   + R        G +    GQ++G H G
Sbjct: 175 EVRRQAAAAGLPNHARRDSTGICFIGERDFRAFLSRYIQ--RSPGPMETPEGQVVGEHQG 232

Query: 259 IINYTIGQRRGLGVAMG----EPLFVVY---LDKNSSRVIVG---PRESLEVHRIYLREI 308
           +  YT+GQRRGLG+       E  + V    + +N+  V+ G   PR  L    +   E+
Sbjct: 233 LAFYTLGQRRGLGLGGLPDHDEGAWYVADKDMARNALIVVQGHAHPR--LLSTALVADEL 290

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACV 366
           +W+             +C VK R  Q   P  ++   +   V V F+  +  V  GQ+ V
Sbjct: 291 SWVAGA----PPTLPLRCTVKSRYRQQDQPCALEAGPSPTSVVVRFDTPQRAVTPGQSVV 346

Query: 367 FYTSDSNEARV-LGGGII 383
           FY     + RV LGGGII
Sbjct: 347 FY-----QGRVCLGGGII 359


>gi|21357477|ref|NP_652639.1| CG3021 [Drosophila melanogaster]
 gi|74872825|sp|Q9W5B6|MTU1_DROME RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|15291857|gb|AAK93197.1| LD29918p [Drosophila melanogaster]
 gi|22831460|gb|AAF45578.3| CG3021 [Drosophila melanogaster]
 gi|220955682|gb|ACL90384.1| CG3021-PA [synthetic construct]
          Length = 389

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 33/369 (8%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++    +   G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAEQGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL        LG D +ATGHY R+
Sbjct: 71  YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129

Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
            L      +  +   R ++  P D  +DQ++FL   +++ L    FPLGD +K  V+DLA
Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLA 187

Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260
           +++G   +A K +S  ICFV +  + D ++       G  L+ D    +G ++G H GI 
Sbjct: 188 KKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDID----SGAVVGHHEGIH 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314
            +T+GQR  L   + +P FV   +  S+ + V       +L    I +   NWL      
Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQ 302

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSD 371
           +  D      +C  + + ++  V   +  +    + V+ +     +  GQ  VFY  T+ 
Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDDTAC 360

Query: 372 SNEARVLGG 380
              AR+L  
Sbjct: 361 LGSARILSA 369


>gi|195347526|ref|XP_002040303.1| GM19108 [Drosophila sechellia]
 gi|194121731|gb|EDW43774.1| GM19108 [Drosophila sechellia]
          Length = 389

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 33/372 (8%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++    +   G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAERGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL      + LG D +ATGHY R+
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALKNLGYDAVATGHYARN 129

Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
            L      +  +   R ++  P D  +DQ++FL    ++ L    FPLGD +K  V+DLA
Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLA 187

Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260
           +++GL  +A K +S  ICFV +  + D ++       G  L+ D    +G ++G H GI 
Sbjct: 188 KKIGLQRLAKKKESTGICFVGKRNFKDFIQEYITSKHGPFLDID----SGAVVGHHEGIH 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314
            +T+GQR  L   + +P FV   +  S+ + V       +L    I +   NWL      
Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALFSTHIDVDPPNWLCSKAQK 302

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSD 371
           +  D      +C  + + ++  V   +  +    + V+ +     +  GQ   FY  T+ 
Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAAFYDDTAC 360

Query: 372 SNEARVLGGGII 383
              AR+L    I
Sbjct: 361 LGSARILSANPI 372


>gi|256370668|ref|YP_003108493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri SMDSEM]
 gi|256009460|gb|ACU52820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri SMDSEM]
          Length = 470

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LLK+ GY+VIG+ L      K S     C   +D  DA  V  
Sbjct: 3   RVIVGMSGGVDSSVAALLLKKQGYEVIGIYL------KYSNIYNQCTWREDSIDAMLVSQ 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ +  Y+ D  + ++  +I      Y  G TP P + CN  +KF   L     L +D +
Sbjct: 57  TLKIPFYIIDISKIYKKKIIKYIYKEYRKGFTPNPDILCNSKIKFKIFLEKLIDLKSDFI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+  +  + ++GK    +   +D  +DQSYFL    Q Q+    FPLG++ K+ VR
Sbjct: 117 ATGHYVIKKE-IFENGKIYYQIKSGIDQNKDQSYFLCKLNQNQIKKSLFPLGNLTKKEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            +A +  L  A K DSQ ICF+  GK              EG I+ +N
Sbjct: 176 QIASKYHLINAKKKDSQGICFI--GKIKFFNFLKLKLKKKEGSIIEIN 221



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG-----PRESLEVHR 302
           +G+I+G+H G   +T GQR+GL +   + PLFV+  D  ++ + VG     P    +V  
Sbjct: 337 DGKIIGKHIGAHFFTKGQRKGLKIGGYKFPLFVIEKDIKNNILYVGMGKNHPGLYTKVVL 396

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           I  + I+W+      D      KC ++ R       ++ ++N   +YV+FE  ++ V +G
Sbjct: 397 IKKKNIHWINPN--HDFFKKEVKCRIRYRQKLQKATLYKKKNK--IYVEFEIPQLAVNAG 452

Query: 363 QACVFYTSDSNEARVLGGG 381
           Q  V+Y ++     V+G G
Sbjct: 453 QFIVWYINNE----VIGSG 467


>gi|282880951|ref|ZP_06289642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305174|gb|EFA97243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 358

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 168/372 (45%), Gaps = 27/372 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L R G       +++       + +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYELVRMGVQPDCFYIKI---GPEEQEEWDCTSEEDLEMATH 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + N V         AG TP P V CNR +KF    +   ++G 
Sbjct: 64  VAAKYGCKLQVVDCHKEYWNEVTRYTMEKVKAGYTPNPDVMCNRLIKFG---AFHEKMGY 120

Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D++ATGHY ++ +  G     R+ +    D  +DQ+ FL      QL    FP+G  +
Sbjct: 121 QYDLIATGHYAQTEIIEG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253
           K  VR +A    L  A + DSQ ICF+ Q  Y + ++R    N G  +E +     G+ +
Sbjct: 176 KGEVRKIAEREHLINAKRKDSQGICFLGQINYNEYLRRYIGENPGKVIELE----TGKQI 231

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G+  +TIGQR GLG   G P FVV   K+ +  ++   +  +    Y ++   + D
Sbjct: 232 GEHRGLWFHTIGQRHGLGFG-GGPWFVV--KKDVANNVLYISKGYDPQTAYQKDFK-IHD 287

Query: 314 GLFEDAVVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
             F    VD      KIR + +    +  Q   D   V  E +  GVA GQ CV Y  D 
Sbjct: 288 FHFLTMPVDMHHVTFKIRHTPEFHSGIIEQTAPDSYTVHAETAIHGVAPGQFCVVY--DE 345

Query: 373 NEARVLGGGIIS 384
                +G G I+
Sbjct: 346 QHHCCIGSGEIT 357


>gi|327313269|ref|YP_004328706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola F0289]
 gi|326945092|gb|AEA20977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola F0289]
          Length = 360

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 172/375 (45%), Gaps = 31/375 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K+ R+ V +SGGVDSSVV     R     + +    +  R     K +  C + +D+  A
Sbjct: 7   KNRRIAVLLSGGVDSSVVVYEFAR-----LDLHPDCFYIRIGPEEKEEWDCNSEEDMEMA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V         V D  + + N V         AG TP P V CNR +KF    +   ++
Sbjct: 62  TAVARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKM 118

Query: 137 GA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G   D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G 
Sbjct: 119 GHNYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQLYDWQLKKALFPIGH 173

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
            +K+ VR +A    L  A + DSQ ICF+    Y + V R        GDI+ L  G+ +
Sbjct: 174 YEKDEVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVHRYLG--EQTGDIIELETGKKI 231

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREINW 310
           G H G+  +TIGQR+GLG+  G P FVV   +DKN   V  G   E+       L + ++
Sbjct: 232 GEHRGLWFHTIGQRKGLGLGGG-PWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHF 290

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYT 369
           L +G+ E       K   KIR + +  P   ++  DG  +      + GVA GQ CV Y 
Sbjct: 291 LTEGITELPE----KITFKIRHTPEYHPARAEQLPDGKCIIHSAGRIHGVAPGQFCVVY- 345

Query: 370 SDSNEARVLGGGIIS 384
            D +  R  G G I+
Sbjct: 346 -DEHHHRCYGSGEIT 359


>gi|150010344|ref|YP_001305087.1| tRNA-specific 2-thiouridylase MnmA [Parabacteroides distasonis ATCC
           8503]
 gi|205816895|sp|A6LIF1|MNMA_PARD8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149938768|gb|ABR45465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parabacteroides distasonis ATCC 8503]
          Length = 358

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 173/370 (46%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +      DGK    +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEI---DGKT--WLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRPGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G   +TIGQR+GLG++ G P FV+   K+  R I+      +    Y + IN  G D + 
Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--QKDIKRNIIYVSNGYDPETQYGKVINMQGFDFIT 285

Query: 317 EDAV--VDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           ED     +G K    KIR + +    +++R  D   V+ ++   G+A GQ  V Y  D +
Sbjct: 286 EDPWGEFEGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIY--DKD 343

Query: 374 EARVLGGGII 383
               LG G+I
Sbjct: 344 HHLCLGSGMI 353


>gi|10190804|emb|CAB65878.1| EG:BACR7A4.8 [Drosophila melanogaster]
          Length = 371

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 164/355 (46%), Gaps = 31/355 (8%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++    +   G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAEQGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149
           Y   +  AV   F   Y  G TP P + CNR +KF DL        LG D +ATGHY R+
Sbjct: 71  YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129

Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
            L      +  +   R ++  P D  +DQ++FL   +++ L    FPLGD +K  V+DLA
Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLA 187

Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260
           +++G   +A K +S  ICFV +  + D ++       G  L+ D    +G ++G H GI 
Sbjct: 188 KKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDID----SGAVVGHHEGIH 243

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314
            +T+GQR  L   + +P FV   +  S+ + V       +L    I +   NWL      
Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQ 302

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +  D      +C  + + ++  V   +  +    + V+ +     +  GQ  VFY
Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFY 355


>gi|299141829|ref|ZP_07034964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris C735]
 gi|298576680|gb|EFI48551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris C735]
          Length = 366

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 176/384 (45%), Gaps = 44/384 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           KD R+ + +SGGVDSSVV   +   G      Y +IG            K +  C + +D
Sbjct: 8   KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIG---------PEEKEEWDCTSEED 58

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +  A  + +       V D  + + + V         AG TP P V CNR +KF    + 
Sbjct: 59  LEMATALTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFG---AF 115

Query: 133 TRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++G D  ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    F
Sbjct: 116 DEKIGHDYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYGWQLRKAIF 170

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           P+G  +K  VR++A    L  A + DSQ ICF+    Y + V+R   G ++ GD++ L  
Sbjct: 171 PIGHFEKNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRY-LGESV-GDVIELET 228

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVH 301
           G+ +G H G+  +TIGQR+GLG   G P FVV  D   + + V          ++  ++H
Sbjct: 229 GKKIGEHKGLWFHTIGQRKGLGFGGG-PWFVVKKDVERNILYVSHGYDPETAYKQDFKIH 287

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVA 360
             +       G  L E      F    KIR + + +P  +++  +  YV    S++ GVA
Sbjct: 288 DFHATTYCPEGTALPELPERITF----KIRHTPEYLPATIEKTGENAYVIHADSKIHGVA 343

Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384
            GQ CV Y  D+      G G I+
Sbjct: 344 PGQFCVVY--DAQHHYCYGSGEIT 365


>gi|238063188|ref|ZP_04607897.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
 gi|237884999|gb|EEP73827.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
          Length = 223

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 13/229 (5%)

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           ++ R +DL +DQSY L   T+ QL    FPLGD  K  VR+ A   GL +ADK DS DIC
Sbjct: 1   MLRRSVDLAKDQSYVLAVLTRAQLDRSVFPLGDSTKAQVREEAARRGLAVADKPDSHDIC 60

Query: 222 FVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRHNGIINYTIGQRRGLGV----AMG 275
           F+  G     +  R+       G++V  L G ++G H G   YT+GQRRGL +      G
Sbjct: 61  FIADGDTRGFLAGRLGEA---PGEVVDALTGAVVGSHTGAYAYTVGQRRGLHLDRPAPDG 117

Query: 276 EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335
            P +V+ +   ++ V VGP E+LEV  +      W G     +      +C V++R+  D
Sbjct: 118 RPRYVLSITPKTNTVTVGPAEALEVRAVRAERPVWTGG----ERPAGPMECEVQLRAHGD 173

Query: 336 PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            VP  V+   D +  +  +   GVA+GQA V Y  D     VLG   ++
Sbjct: 174 VVPATVELTGDTLRAELRRPVRGVAAGQAVVAYRPDPAGDVVLGSATVA 222


>gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 365

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 165/358 (46%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   G+     +L      K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGHRP---SLFYIKIGKDDADYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF       R  G D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFG---CFERYAGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+
Sbjct: 115 DFTATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A +  L  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ILG H 
Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLG--EKEGRIIELETGKILGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D + + + V      E    Y   +++ +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITEN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            +E  V        KIR + D +   + ++ DG  +  E+   G+A GQ  V Y   S
Sbjct: 287 PWE-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVYDEAS 343


>gi|223942189|gb|ACN25178.1| unknown [Zea mays]
          Length = 329

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 142/292 (48%), Gaps = 30/292 (10%)

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
           + Y  G TP P V CN  +KF   L     LG D +A+GHY        ++ +   ++  
Sbjct: 3   NEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQL 62

Query: 166 PMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
             D  +DQ+YFL   +Q QL  L FPLG + K+ VR LA +MGL    + DSQ ICF+ +
Sbjct: 63  SKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEVRRLATQMGLPNQGRKDSQGICFLGK 122

Query: 226 GKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282
            K+ + V+R      GI LE +    +G  LG H G   YTIGQR+GL +  G P +VV 
Sbjct: 123 VKFSEFVERHIGEKEGIILEAE----SGDYLGIHRGFWFYTIGQRQGLRLPGG-PWYVVE 177

Query: 283 LDKNSSRVIVGPR-ESLEVHRIYLR--EINWL---GDGLFEDAVVDGFKCFVKIRSSQD- 335
            D  ++ V V     SL+  R   R   +NW    G G  E       KC  K+R S + 
Sbjct: 178 KDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNCGPGNNEQ-----LKC--KVRHSPEF 230

Query: 336 ----PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                V    + N D + V   + + G+A+GQ   FY+    E   LG GII
Sbjct: 231 HDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYS----ENVCLGSGII 278


>gi|288799734|ref|ZP_06405193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332982|gb|EFC71461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 357

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 177/375 (47%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +++N +D ++ V +SGGVDSSVV   L + G       +++       + +  C + +D+
Sbjct: 1   MNENLQDKKIAVLLSGGVDSSVVLYELVQQGLKPDCFYIKI---GPEQEEEWDCSSEEDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  V         V D  + + + V         AG TP P V CNR +KF       
Sbjct: 58  EMATAVAHRYGCKLEVIDCHKEYWDQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFHD-K 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +    D++ATGHY ++ +  G    ++ ++  P D  +DQ+ FL      QL    FP+G
Sbjct: 117 KGKDYDLIATGHYAQTEIING----KKWLVTSP-DPVKDQTDFLAQIYDWQLKKAIFPIG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNG 250
             +K+ VR +A    L  A + DSQ ICF+ +  Y D +++    N G  LE   +  N 
Sbjct: 172 HFQKDEVRVIAEREHLINAKRKDSQGICFLGKINYNDYIRKYLGENIGEVLE---LQTNK 228

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +I G+H G+  YTIGQR GLG   G P FVV  D N++ + V   +  E    +  E   
Sbjct: 229 RI-GQHKGLWFYTIGQRHGLGFGGG-PWFVVKKDVNNNILYVS--KGYEPSSAFKSEFG- 283

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYT 369
           + D  F    VD      KIR + +     +++ ++  Y  + +  + GVA GQ CV Y 
Sbjct: 284 VSDFHFLTEEVDLSNVTFKIRHTPEFHKARMEKINNNEYRLYSECPIHGVAPGQFCVVY- 342

Query: 370 SDSNEARVLGGGIIS 384
            D    R +G G IS
Sbjct: 343 -DEEHHRCIGSGEIS 356


>gi|256839194|ref|ZP_05544704.1| tRNA methyl transferase [Parabacteroides sp. D13]
 gi|256740113|gb|EEU53437.1| tRNA methyl transferase [Parabacteroides sp. D13]
          Length = 358

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 173/370 (46%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +      DGK    +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEI---DGKI--WLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRPGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G   +TIGQR+GLG++ G P FV+   K+  R I+      +    Y + IN  G D + 
Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--QKDIKRNIIYVSNGYDPETQYGKVINMQGFDFIT 285

Query: 317 EDAV--VDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           ED     +G K    KIR + +    +V+R  D   V+ ++   G+A GQ  V Y  D +
Sbjct: 286 EDPWGEFEGEKEITFKIRHTPEFTHGYVRRIGDLYRVESDEKIQGIAPGQYSVIY--DKD 343

Query: 374 EARVLGGGII 383
               LG G+I
Sbjct: 344 HHLCLGSGMI 353


>gi|288802136|ref|ZP_06407577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica D18]
 gi|288335571|gb|EFC74005.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica D18]
          Length = 360

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 171/370 (46%), Gaps = 27/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ V +SGGVDSSVV     R G       +++       K    C + +D+  A  V  
Sbjct: 10  RIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATLVAR 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139
                  V D  + + + V         AG TP P V CNR +KF    +   ++G D  
Sbjct: 67  RFGCKLEVIDCHKEYWDKVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGHDYD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K  
Sbjct: 124 LIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKNE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR++A    L  A + DSQ ICF+    Y + V+R   G  + GD++ L  G+ +G H G
Sbjct: 179 VREIAERENLINAHRKDSQGICFLGNIDYNEYVRRY-LGEEI-GDVIELETGKKIGEHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWLGDGL 315
           +  +TIGQR+GLG+  G P FV+  D  KN   V  G   +    + + L + ++L +G+
Sbjct: 237 LWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGI 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374
                    K   KIR + +  P  V++  DG  +      + GVA GQ CV Y  D   
Sbjct: 296 ----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQH 349

Query: 375 ARVLGGGIIS 384
            R  G G I+
Sbjct: 350 HRCFGSGEIT 359


>gi|298498767|ref|ZP_07008574.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MAK 757]
 gi|297543100|gb|EFH79150.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MAK 757]
          Length = 263

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 142/275 (51%), Gaps = 27/275 (9%)

Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           + +KF   L    + L AD +A GHY+R       +G++ + M R +D  +DQSYFL+  
Sbjct: 1   KEIKFKAFLEFADEVLDADYIAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTL 57

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           + +Q+    FP+G+++K  VR +A E GL  A K DS  ICF+ + K+ D + R     A
Sbjct: 58  SHEQVARTLFPVGELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--A 115

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--- 292
             G I    G+++G H G++ +T+GQR+GL +     +  +P +V   DK+  R ++   
Sbjct: 116 QPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAV 173

Query: 293 --GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVY 349
                  L+ H +   +++W+        + +  +C VK R  Q  +    +  +DD + 
Sbjct: 174 QGADHPLLKSHGLVAAQLHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIK 229

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           V F++ +V V  GQ+ VFY  +      LGGGII 
Sbjct: 230 VMFDEPQVAVTPGQSAVFYQGEI----CLGGGIIE 260


>gi|220903867|ref|YP_002479179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868166|gb|ACL48501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 425

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 178/427 (41%), Gaps = 92/427 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V VA+SGGVDS     +L++ GY V+ +  L L ++           A +        C 
Sbjct: 21  VAVAVSGGVDSLCALVMLQQAGYSVLALHGLFLPDA-----------APEPPPGLAAACA 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  +V D    F   V+ PFA++YAAG TP PC  CNR +KF  L      LGA  L
Sbjct: 70  ALGVPLHVADLRPVFEREVLAPFAAAYAAGRTPNPCALCNRAIKFGALFDAAMGLGAQRL 129

Query: 142 ATGHYIR-------------------------SRLYVGDD------------GKRRRIMC 164
           ATGHY R                         +R+   D+            G    ++ 
Sbjct: 130 ATGHYARLAAAPEDAVTALLPEGLDPAASRDNARISAVDNGCGCTEGRHGVSGAHPPLLA 189

Query: 165 RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ 224
              D  +DQSYFL    +++L    FPL +  K   R++    GL +   ++SQDICF  
Sbjct: 190 AAHDAAKDQSYFLSLVPRERLARACFPLAEQDKARSREIVARAGLAVPVPNESQDICFAP 249

Query: 225 ------------QGKYFDVVKRINAGIAL----EGDIVHLNG----QILGRHNGIINYTI 264
                          Y   ++R     AL     G +   +     + + RH G+  YT 
Sbjct: 250 VVSGAATAGLAAADAYRPFLERRWQKAALVPPGPGPVFLRDAAGGLREIARHKGLWRYTE 309

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR-------IYLREINWLGDGLFE 317
           GQR+GLG+A  EPL+V+  D  ++ ++VGPR  L V R       + L +  W G+ L  
Sbjct: 310 GQRKGLGIAHSEPLYVLAKDGTANALVVGPRALLGVTRCLTGAANVSLPQQYWTGELL-- 367

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                     V++R  Q P P  V  +  G + + F + +   A GQ    Y        
Sbjct: 368 ----------VRLRHRQKPSPAVVTLDASGRLDICFAEPQFPSAPGQVAAVY---DGRGH 414

Query: 377 VLGGGII 383
           VL  GI+
Sbjct: 415 VLAAGIV 421


>gi|255012392|ref|ZP_05284518.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. 2_1_7]
 gi|262382361|ref|ZP_06075498.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
 gi|298374740|ref|ZP_06984698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_19]
 gi|301308423|ref|ZP_07214377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 20_3]
 gi|262295239|gb|EEY83170.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
 gi|298269108|gb|EFI10763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_19]
 gi|300833893|gb|EFK64509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 20_3]
          Length = 358

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 173/370 (46%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +      DGK    +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEI---DGKIW--LSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRPGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G   +TIGQR+GLG++ G P FV+   K+  R I+      +    Y + IN  G D + 
Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--QKDIKRNIIYVSNGYDPETQYGKVINMQGFDFIT 285

Query: 317 EDAV--VDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           ED     +G K    KIR + +    +++R  D   V+ ++   G+A GQ  V Y  D +
Sbjct: 286 EDPWGEFEGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIY--DKD 343

Query: 374 EARVLGGGII 383
               LG G+I
Sbjct: 344 HHLCLGSGMI 353


>gi|317505238|ref|ZP_07963170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella salivae DSM 15606]
 gi|315663667|gb|EFV03402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella salivae DSM 15606]
          Length = 366

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 180/384 (46%), Gaps = 44/384 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           KD R+ + +SGGVDSSVV   +   G      Y +IG            K +  C + +D
Sbjct: 8   KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIG---------PEEKEEWDCTSEED 58

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +  A  +    +    V D  + + + V          G TP P V CNR +KF    + 
Sbjct: 59  LEMATALTKRFDCQLKVIDCHKEYWSKVTRYTMDKVKMGFTPNPDVMCNRLIKFG---AF 115

Query: 133 TRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++G   D++ATGHY ++    G    R+ ++  P D  +DQ+ FL      QL    F
Sbjct: 116 DEKIGFNYDLIATGHYAQTEWSDG----RKWLITSP-DPIKDQTDFLAQIYDWQLKKAIF 170

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           P+G+ +K  VR +A    L  A + DSQ ICF+    Y + V+R        GD++ L  
Sbjct: 171 PIGNFEKNDVRKIAEREHLINAKRRDSQGICFLGDIDYNEYVRRYLGECV--GDVIELET 228

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVH 301
           G+ +G H G+  +TIGQR+GLG   G P FVV  D   + + V          ++S ++H
Sbjct: 229 GKKIGEHKGLWFHTIGQRKGLGFG-GGPWFVVKKDVEHNILYVSHGYDPETAYKQSFKIH 287

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVA 360
             +   + +  +G+    + +  +   KIR + + +P  +++  +  Y+    S++ GVA
Sbjct: 288 DFHA--VTFCSEGVALPDLPE--RITFKIRHTPEYLPAKLEKTGEQSYIIHADSKIHGVA 343

Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384
            GQ CV Y  D+   R  G G I+
Sbjct: 344 PGQFCVIY--DAEHHRCYGSGEIT 365


>gi|302346886|ref|YP_003815184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica ATCC 25845]
 gi|302150717|gb|ADK96978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica ATCC 25845]
          Length = 360

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 171/370 (46%), Gaps = 27/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ V +SGGVDSSVV     R G       +++       K    C + +D+  A  V  
Sbjct: 10  RIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATLVTR 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139
                  V D  + + + V         AG TP P V CNR +KF    +   ++G D  
Sbjct: 67  RFGCKLEVIDCHKEYWDQVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGHDYD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K  
Sbjct: 124 LIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKNE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR++A    L  A + DSQ ICF+    Y + V+R   G  + GD++ L  G+ +G H G
Sbjct: 179 VREIAERENLINAHRKDSQGICFLGNIDYNEYVRRY-LGEEI-GDVIELETGKKIGEHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWLGDGL 315
           +  +TIGQR+GLG+  G P FV+  D  KN   V  G   +    + + L + ++L +G+
Sbjct: 237 LWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGI 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374
                    K   KIR + +  P  V++  DG  +      + GVA GQ CV Y  D   
Sbjct: 296 ----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQH 349

Query: 375 ARVLGGGIIS 384
            R  G G I+
Sbjct: 350 HRCFGSGEIT 359


>gi|291534007|emb|CBL07120.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Megamonas hypermegale ART12/1]
          Length = 135

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 84/127 (66%), Gaps = 6/127 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V VAMSGGVDSS+ AALL   GYDVIGVT+ L +    S+  G   A   V DA++V D
Sbjct: 4   KVAVAMSGGVDSSLTAALLIEQGYDVIGVTMTLSDE---SREAGGSTA---VSDAKKVAD 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ HYV +Y ++F++ VI  F S YA G TP PCV CN TVKF  LL    +LGAD +
Sbjct: 58  ALNIPHYVVNYHKKFKDDVIKYFISEYAKGRTPNPCVRCNNTVKFGSLLKDCLELGADCV 117

Query: 142 ATGHYIR 148
           ATGHY R
Sbjct: 118 ATGHYAR 124


>gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
 gi|217987412|gb|EEC53742.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
          Length = 365

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 165/358 (46%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   G+     +L      K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGHRP---SLFYIKIGKDDADYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF       R  G D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFG---CFERYAGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+
Sbjct: 115 DFTATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+A +  L  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ILG H 
Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGRINYNDFVRRFLG--EKEGRIIELETGKILGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D + + + V      E    Y   +++ +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITEN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            +E  V        KIR + D +   + ++ DG  +  E+   G+A GQ  V Y   S
Sbjct: 287 PWE-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVYDEAS 343


>gi|316971871|gb|EFV55594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Trichinella spiralis]
          Length = 717

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 180/379 (47%), Gaps = 25/379 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V  A+SGG+DS+V A LLK  G+DVIGV ++ ++        G CC+ +D+ DA++VC  
Sbjct: 5   VACAISGGIDSAVTAHLLKARGFDVIGVFMKNWD---LIDEFGYCCSDKDLLDAQKVCRH 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141
           + +  +   +   + + V       Y  G+TP P + CNR +KF    S     L  D +
Sbjct: 62  LKIPFHEVHFINEYWDDVFTNLLDGYVIGKTPNPDILCNRLIKFDLFFSYCMHTLKVDAV 121

Query: 142 ATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY RS   R       ++   + RP D  +DQ+YFL    Q  L    FPL +  K+
Sbjct: 122 ATGHYARSSFGRFLENFSPEKNAKLFRPTDKLKDQTYFLCQIPQASLRRTMFPLANWLKK 181

Query: 199 SVRDLAREMGLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRH 256
            VR +A  +G+   + K +S  IC + +  +   +   +  +  +G  V ++ Q  +G H
Sbjct: 182 DVRMMAERIGMGWLNAKKESYGICMIGKRNFKHFIS--DYVMPKKGFFVDVDSQKKVGEH 239

Query: 257 NGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            GI  +T GQR  + +  G+ P FV  +D   S + V       SL    +   +  W+ 
Sbjct: 240 EGIHLFTRGQR--VKIPGGKCPYFVSKIDPVDSTIYVCCYNFHPSLYASSVQTLQPYWIE 297

Query: 313 DGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVF 367
           +   E  V+      KC  K +         V++  ++ G+ V+ +     +++GQ  +F
Sbjct: 298 EQ--EPQVLKESRKLKCEFKYQHVLRSTSCIVKKLPSELGLQVELKHPVRAISAGQYAIF 355

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y +D +E   L   +++ S
Sbjct: 356 Y-NDQDECLALLRIVLTVS 373


>gi|154491735|ref|ZP_02031361.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC
           43184]
 gi|154087976|gb|EDN87021.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC
           43184]
          Length = 358

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 170/370 (45%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A +  L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRTGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G   +TIGQR+GLG++ G P FV+   K+  R I+      +    Y + IN  G D + 
Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--KKDIKRNIIYVSNGYDPETQYGKIINMHGFDFIT 285

Query: 317 EDA---VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           ED      D  +   KIR + D     ++R  D   ++ +    G+A GQ  V Y  D +
Sbjct: 286 EDPWGEFADEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVY--DKD 343

Query: 374 EARVLGGGII 383
               LG G+I
Sbjct: 344 HRLCLGSGMI 353


>gi|323507819|emb|CBQ67690.1| related to trna methyltransferase [Sporisorium reilianum]
          Length = 479

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 173/383 (45%), Gaps = 39/383 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNS--RKASKRKGS-----CCAG 70
           K  RV VA+SGGVDSSV A LL +   YD+  V ++ +N      + + GS     C   
Sbjct: 80  KGDRVTVALSGGVDSSVTALLLAQASHYDLHAVFMRNWNELDESGTMQPGSGGATGCTWQ 139

Query: 71  QDVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           +D +D + VC  + N+   + D    +   V  P    +  G TP P V CNR +KF  L
Sbjct: 140 RDWHDVQAVCRHLGNMPVSMVDLSREYWTQVFEPALDEWRQGTTPNPDVSCNREIKFGAL 199

Query: 130 LS---VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +      R+ G    LATGHY     +V    + R ++ R  D  +DQ+Y+L +  + +L
Sbjct: 200 MERLLPEREKGRKSWLATGHYA----HVAWSEQGRPMLMRAKDRTKDQTYYLSSVAEDRL 255

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG------- 238
               FPL  + K  VR+LA++  L  A++ +S  ICFV   +  D  K I+         
Sbjct: 256 AHAHFPLAHLLKSQVRELAKKHSLPTAERRESMGICFVGT-RGSDGSKGISNTQGFSTFL 314

Query: 239 ----IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV-- 292
                +  G+IV  + Q++  H G+   T+GQ   +  A  +  +V   D  ++R++   
Sbjct: 315 NGYITSPPGEIVDEHAQVVATHRGLHTLTVGQGARIRGATSK-YYVAKKDIANNRIVAVQ 373

Query: 293 GPRES-LEVHRIYLREINWLG---DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR---ND 345
           G +   L   R+Y+REI W+        ++          ++R  Q      V R     
Sbjct: 374 GKQHPMLLCRRLYVREIEWIWREPPPELKEGGAGKVTLLAQVRHRQVETECIVSRAKGGG 433

Query: 346 DGVYVDFEKSEVGVASGQACVFY 368
            G  V+F +  + VA GQ    +
Sbjct: 434 SGYVVEFAEPVLAVAPGQVLGLW 456


>gi|282859182|ref|ZP_06268304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bivia JCVIHMP010]
 gi|282588001|gb|EFB93184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bivia JCVIHMP010]
          Length = 386

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 181/395 (45%), Gaps = 45/395 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           KD ++ V +SGGVDSSVV     R     +G+    Y  +   +   +  C + +D+  A
Sbjct: 7   KDKKIAVLLSGGVDSSVVVWEFAR-----LGLHPDCYYIKIGPEEAEAWDCSSEEDLEMA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC        V D  + +   V         AG TP P V CNR +KF       +  
Sbjct: 62  TAVCRRFECKLEVIDCHKEYWGQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFYE-KKGY 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D++ATGHY +++     DGK+   +C   D  +DQ+ FL      QL    FP+G  +
Sbjct: 121 EYDLIATGHYAQTKWI---DGKK--WLCTSPDPVKDQTDFLAQIYDWQLQKAIFPIGHYE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K  VR++A    L  A + DSQ ICF+    Y + V+R     A  G+I+ L  G+ +G 
Sbjct: 176 KNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGENA--GEIIELETGKKIGE 233

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL- 311
           H G+  +TIGQR+GLG+  G P FV+  D   + + V      E+    +  + +++WL 
Sbjct: 234 HKGLWFHTIGQRKGLGLGGG-PWFVIKKDVEKNILYVSHGYDPETAYKRKFKVCDLHWLT 292

Query: 312 --------GDG-LFEDAVVDGFKCFV-----KIRSSQDPVPVFVQ-RNDDGVYVD----- 351
                    +G + ++     FK  +     KIR + +    +++  +++G  V+     
Sbjct: 293 VSPSELEDSNGIILQNGCCSSFKHTLIPITFKIRHTPEYHQGYLEVLSEEGHLVEGSEAL 352

Query: 352 --FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              +K   GVA GQ CV Y  D    R  G G I+
Sbjct: 353 IHAQKKIHGVAPGQFCVIY--DEEHERCFGSGEIT 385


>gi|149183668|ref|ZP_01862082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. SG-1]
 gi|148848616|gb|EDL62852.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. SG-1]
          Length = 155

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 90/157 (57%), Gaps = 11/157 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MKKEPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIR--------SRLYVGDDGKRRRI 162
            +LGAD LATGHY +          L V D  K +RI
Sbjct: 118 MKLGADYLATGHYAQVEYRDGEYKMLRVKDSNKTKRI 154


>gi|159469071|ref|XP_001692691.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277944|gb|EDP03710.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 365

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 175/383 (45%), Gaps = 38/383 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSS+   LL   G+DV    LQ++          +C   +D+  AR+
Sbjct: 3   KRLRVAVLLSGGVDSSLALRLLVAAGHDVTAFYLQIWFQEDFRNFWDACPWEEDLEYARK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLG 137
           VC+ + V   V     ++ + V+    +   AG TP P + CN  VKF      + ++ G
Sbjct: 63  VCEALGVKLEVVPLTTQYWDRVVASSVAEIRAGRTPNPDIWCNSRVKFGAFYDHLAQRHG 122

Query: 138 A--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A  D +A+GHY R       + + R ++    D  +DQ+YFL   T  QL  + FPLG +
Sbjct: 123 AEFDRVASGHYARVAAAAAVEEEVRLLLT--PDAVKDQTYFLSGLTPDQLSRVMFPLGCL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQI 252
            K  VR LA    L   ++ DSQ ICF+ + ++ + VK       G  LE +     G+ 
Sbjct: 181 TKSQVRKLAAAADLANKNRKDSQGICFLGKVRFSEFVKEHLGEWHGPLLEAE----TGRP 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307
           LG H G   YT+GQR G+ +  G P +VV  D   + V+V  R   +      R      
Sbjct: 237 LGTHAGYWFYTVGQRGGIKLP-GGPWYVVAKDTARNVVLVS-RSYYDCEGGKARNAFTCG 294

Query: 308 -INWLGDGL---FEDAVVDG---FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             NWL   L       V  G   ++C +++       P++         V  E ++ G+A
Sbjct: 295 PFNWLHPRLRPRLGAGVRHGPNMYRCTLRLHDGSG-APLYGT-------VVLEANDQGLA 346

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ  VFY   +     LG  +I
Sbjct: 347 PGQYAVFYQGGT----CLGSAVI 365


>gi|198275614|ref|ZP_03208145.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
 gi|198271243|gb|EDY95513.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
          Length = 368

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 172/363 (47%), Gaps = 28/363 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           KDM V   +SGGVDS+VV  LL   G+  D+  + + +      +     C A +D+  A
Sbjct: 11  KDMNVAALISGGVDSAVVVHLLCEQGHKPDLFYIKIGMDTDDGLT-----CTAEEDIELA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                   +S ++ D ++ + + V+         G TP P V CN+ +KF        Q 
Sbjct: 66  SATARKYGLSFHIVDLQQAYWDNVVAYTVDRVRRGLTPNPDVMCNKLIKFGCFDREAGQ- 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY  +      D      +    D  +DQ+ FL      Q+  L FPLG   
Sbjct: 125 GYDKIATGHYASTL-----DIDGYTWLATAKDPVKDQTDFLAQIDYLQVSRLMFPLGGFL 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           KE VRD+A +  L  A + DSQ ICF+ +  Y D ++R        G +V L  G+++G+
Sbjct: 180 KEEVRDMAVKASLPSARRKDSQGICFLGKINYNDFIRRFLG--ERPGPVVELETGKVIGQ 237

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV-----HRIYLREINW 310
           H G   +TIGQR+GLG+  G P FVV  DKN    I+      +      H   +++ ++
Sbjct: 238 HRGYWFHTIGQRKGLGLG-GGPWFVV--DKNVEENIIYVSHGYDTEKQFGHFFCVKDFHF 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +    +++   +   CF KIR +       V+  +DG ++V  E+   G+A GQ  V Y 
Sbjct: 295 ITLNPWKEQETE--ICF-KIRHTDTFQTGKVRFAEDGTLHVSSEEPIQGIAPGQFGVIYD 351

Query: 370 SDS 372
            D+
Sbjct: 352 KDA 354


>gi|294672865|ref|YP_003573481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella ruminicola 23]
 gi|294474344|gb|ADE83733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella ruminicola 23]
          Length = 359

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 165/371 (44%), Gaps = 18/371 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ ++ R+ V +SGGVDSSVV     R G       +++       + +  C + +D+  
Sbjct: 4   KDIENKRIAVLLSGGVDSSVVVYEFARMGLHPDCFYIKI---GPEEEEEWDCSSEEDLEM 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V         V D    + + V         AG TP P V CNR +KF       R 
Sbjct: 61  ATAVSHKFGCKLEVIDCHNEYWDQVTKYTMDKVRAGLTPNPDVMCNRLIKFG-AFDEKRG 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D++ATGHY  +      D    + +C   D  +DQ+ FL      QL    FP+G  
Sbjct: 120 HDYDLIATGHYAMTET----DENGDKWLCTSPDPVKDQTDFLAQIADWQLKKALFPIGHY 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
            K+ VR +A    L  A + DSQ ICF+ +  Y D ++R        GD++ L  G+ +G
Sbjct: 176 VKDEVRVIAEREHLVNAKRKDSQGICFLGKINYNDYIRRYLG--EQPGDVIELETGKRIG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G+  +TIGQR+G+G   G P FVV   K+ +  I+      +    Y  +   + D 
Sbjct: 234 EHKGLWFHTIGQRKGMGFGGG-PWFVV--KKDVANNILYVSHGYDPETAYKADFP-VHDF 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSN 373
            F    +   K   KIR + +  P  ++       +   K ++ GVA GQ CV Y  D +
Sbjct: 290 HFLTKELQPTKITFKIRHTPEYHPATLEWTSPSTCMVHSKDKIHGVAPGQFCVVY--DKD 347

Query: 374 EARVLGGGIIS 384
             R LG G I+
Sbjct: 348 HHRCLGSGEIT 358


>gi|255692219|ref|ZP_05415894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260622083|gb|EEX44954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 355

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 170/369 (46%), Gaps = 29/369 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMEGAEYMDCSAEEDIELSAATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +S  + D+ + +   V          G TP P V CN+ +KF       +++G   
Sbjct: 58  RKYGLSLEIVDFHKEYWENVATYAIGKIRQGLTPNPDVMCNKLIKFG---CFEQRIGKEF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K 
Sbjct: 115 DFTATGHYATT---IQRDGKVW--LGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ LG H+
Sbjct: 170 EVREIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLG--EREGVIVELETGKKLGTHH 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   +R+ +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIQENIIYVSRGYGVETQYGNEFQMRDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           ++  +D  VD      KIR + +      + + D+  ++   +   G+A GQ  V Y   
Sbjct: 287 IWKGQDKEVD---ITFKIRHTPEFTKGKLIMKGDNQFHILSSEKLQGIAPGQFGVIY--- 340

Query: 372 SNEARVLGG 380
             EAR+  G
Sbjct: 341 DKEARICVG 349


>gi|218264372|ref|ZP_03478229.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222070|gb|EEC94720.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
           DSM 18315]
          Length = 358

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 170/370 (45%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A +  L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRTGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G   +TIGQR+GLG++ G P FV+   K+  R ++      +    Y + IN  G D + 
Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--KKDIKRNVIYVSNGYDPETQYGKIINMHGFDFIT 285

Query: 317 EDA---VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           ED      D  +   KIR + D     ++R  D   ++ +    G+A GQ  V Y  D +
Sbjct: 286 EDPWGEFEDEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVY--DKD 343

Query: 374 EARVLGGGII 383
               LG G+I
Sbjct: 344 HRLCLGSGMI 353


>gi|229495661|ref|ZP_04389390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317431|gb|EEN83335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 383

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 181/390 (46%), Gaps = 34/390 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L + P+D  + V  SGGVDSSV   LL + G+  D+  + + + +          C A +
Sbjct: 12  LQEVPRDASIAVLASGGVDSSVAVHLLLQAGFRPDLFYIRIGMEDEEGFI----DCPAEE 67

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+     +     + + V D  + +   V+     S   G TP P + CN+ +KF     
Sbjct: 68  DMEMVTLLARKYQLHYEVIDLHKEYWERVVKYTIESVRQGLTPNPDMMCNKLIKFG---V 124

Query: 132 VTRQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++G   D +ATGHY  +      DGK    +    D  +DQ+ FL     +Q+  L 
Sbjct: 125 FEERVGHRYDYIATGHYASTARV---DGKT--FLATAPDPVKDQTDFLAQINFKQISKLL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HL 248
           FPLG + K+ VR +A E GL  A + DSQ ICF+ +  Y D ++R        G I+ + 
Sbjct: 180 FPLGCLTKQQVRMVAEEAGLANAHRKDSQGICFLGKINYNDFIERYLG--KRPGRIIEYE 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIY 304
            G+ LG H G   +TIGQR+GLG++ G P FVV  D   + ++V     P        I+
Sbjct: 238 TGKTLGTHQGFWFHTIGQRKGLGLS-GGPWFVVKKDCKRNIILVSRGYDPLTQYGT-EIF 295

Query: 305 LREINWLGDGLFEDAVVDGFK-------CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           + + +++ + LF      G K         +KIR + + V   ++R + G ++  E    
Sbjct: 296 VDKFDFITEDLFAPEGAVGNKEGAQVVPITLKIRHTPEFVRATIRRLERGYHIVSETPIQ 355

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSK 387
           G+A GQ  V Y  +S      G G+I   K
Sbjct: 356 GIAPGQYAVIYDPESR--LCFGSGMIVKGK 383


>gi|328864882|gb|EGG13268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyostelium fasciculatum]
          Length = 580

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 21/303 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDS++V+ LL +  + V  V ++ ++ +      G C   +D  DA  +  +
Sbjct: 178 ICVGLSGGVDSAIVSYLLGKQDFKVKCVYIKSWDEKD---ELGYCSGERDYKDACDIAQS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V+ +  D+ + + N V   F   Y  G TP P V CNR +KF       +QLGAD++A
Sbjct: 235 LGVTLFHRDFTKEYWNRVFHSFLKDYQQGYTPNPDVFCNREIKFDVFTEHAKQLGADMIA 294

Query: 143 TGHYIR--------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           TGHY             +         I+ R  D  +DQSYFL  T   +L +  FPLG+
Sbjct: 295 TGHYATILHNQQQPQHQHQQQQQNNNIILKRGKDRNKDQSYFLCMTEGHKLAEAIFPLGE 354

Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQI 252
             K  V  +A ++G  +I  K  S+ ICFV +    + +++    I L  G  V   G I
Sbjct: 355 YLKNDVIAMANKIGFNNITSKRSSRGICFVGKRPLPEFLEQY---IPLVRGAFVDDKGSI 411

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREI 308
           +G H G + YTIGQ+  +     E  F+  +D  +++V V P     + L  +   +  +
Sbjct: 412 IGEHKGAVCYTIGQKANIS-GRQERYFIYKVDVINNQVHVCPESVSDQYLLSNACVISHL 470

Query: 309 NWL 311
           NW+
Sbjct: 471 NWI 473


>gi|281423882|ref|ZP_06254795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris F0302]
 gi|281401970|gb|EFB32801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris F0302]
          Length = 366

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 178/384 (46%), Gaps = 44/384 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           KD R+ + +SGGVDSSVV   +   G      Y +IG            K +  C + +D
Sbjct: 8   KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIG---------PEEKEEWDCTSEED 58

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +  A  + +       V D  + + + V         AG TP P V CNR +KF    + 
Sbjct: 59  LEMATALTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFG---AF 115

Query: 133 TRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++G D  ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    F
Sbjct: 116 DEKIGHDYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYGWQLRKTIF 170

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           P+G  +K  VR++A    L  A + DSQ ICF+    Y + V+R   G ++ GD++ L  
Sbjct: 171 PIGHFEKNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRY-LGESV-GDVIELET 228

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRES----LEVH 301
           G+ +G H G+  +TIGQR+GLG + G P FVV  D   + + V     P  +     ++H
Sbjct: 229 GKKIGEHKGLWFHTIGQRKGLGFSGG-PWFVVKKDVERNILYVSHGYDPETAYKLDFKIH 287

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVA 360
             +       G  L E      F    KIR + + +P  ++R  +  YV    +++ GVA
Sbjct: 288 DFHATTYCPEGTALPELPERITF----KIRHTPEYLPATLERIGEKTYVIHADNKIHGVA 343

Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384
            GQ CV Y  D++     G G I+
Sbjct: 344 PGQFCVVY--DAHHHYCYGSGEIT 365


>gi|328859131|gb|EGG08241.1| hypothetical protein MELLADRAFT_35034 [Melampsora larici-populina
           98AG31]
          Length = 345

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 153/310 (49%), Gaps = 28/310 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYD----VIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77
           + +AMSGGVDSSVVA+LL R GY      I V   + +S    K +G  C   +D  D +
Sbjct: 12  ISIAMSGGVDSSVVASLLIRSGYHHRLRAIFVKNWMDDSDVKVKDQGIRCQWKRDWDDVQ 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            VCD + +   + D  + + N V  P    + +G TP P V CNR +KF  L   + +  
Sbjct: 72  SVCDHLKLPCQLIDLSKAYWNQVWEPCLKIWESGGTPNPDVMCNRQIKFGILAEHLLKSD 131

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
              +LATGHY  +RL    +G    +     +  +DQSY+L     + L    FPLG+  
Sbjct: 132 PQTILATGHY--ARLKHTQEGT-TELHQAFSETSKDQSYYLSTIPSKILKRCLFPLGENG 188

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--GIALE---GDIVHLN 249
             KE VR +A+E+ L  A K++S  IC V+       +KR     G  +E   G+IV  +
Sbjct: 189 FNKELVRKIAKEVRLPNALKNESMGICLVEPR-----IKRFEEFLGTQIEGRKGEIVLFD 243

Query: 250 GQ--ILGRHNGIINYTIGQRRGLGV--AMGEPLFVVYLDKNSSRVIVGPRE---SLEVHR 302
            Q  ++G H GI NYTIGQR  +    A  + L+V   D   +RV V P     +L   +
Sbjct: 244 DQKTVVGEHRGIWNYTIGQRCRINKPNAFPQKLYVAKKDLKLNRVFVVPHHDHPALYTRK 303

Query: 303 IYLREINWLG 312
           I+  +  W+ 
Sbjct: 304 IFTYDFQWIN 313


>gi|256090031|ref|XP_002581029.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Schistosoma mansoni]
 gi|238666809|emb|CAZ37268.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt
           ransferase,putative [Schistosoma mansoni]
          Length = 312

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 151/296 (51%), Gaps = 38/296 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V  A+SGGVDS+V A LLK+ G+ V GV +  ++S      K  C   +D  DA+ VCD 
Sbjct: 27  VACAISGGVDSAVSAYLLKKKGFQVKGVFMTNWDSLD---EKIDCSLDKDRQDAQFVCDY 83

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------------ 130
           + +  +  ++ + + N V +P   SY  G TP P + CNR VKF+ L             
Sbjct: 84  LGIPFFEKNFVKEYWNYVFLPLIKSYEQGATPNPDILCNRFVKFNLLTRAVLKSKNQCAD 143

Query: 131 ---SVTRQLGADVLATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                +  L AD +ATGHY ++       Y  D+ + R  + R +D  +DQ+++L   + 
Sbjct: 144 DDSQASSNLAADAIATGHYCQNSFGNYLQYRKDNVEAR--LLRSVDRVKDQTFWLSTISH 201

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAG 238
           ++L    FP+GD+ K  V+ +A+++GL  I  + +S  +CF+ + ++ + +        G
Sbjct: 202 KELPYCMFPVGDLLKTQVKQIAQDIGLSRIYSRRESMGMCFIGKRRFSEFIDNYLEPKPG 261

Query: 239 IA--LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
           +   LE D      Q+L  H G+ ++T+GQR  +    G P +V  +D ++  + V
Sbjct: 262 VYKDLETD------QVLEEHTGVHHFTLGQRIPIKRFNG-PYYVSKMDCHNQIIYV 310


>gi|312971270|ref|ZP_07785448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
 gi|310336472|gb|EFQ01658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
          Length = 234

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 9/194 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 7   KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 64  KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R  V  DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  V
Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178

Query: 201 RDLAREMGLDIADK 214
           R +A ++GL  A K
Sbjct: 179 RKIAEDLGLVTAKK 192


>gi|255522399|ref|ZP_05389636.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J1-175]
          Length = 168

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 8/172 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
             LGAD +ATGHY + +  VGD+ +    + R +D  +DQ+YFL   +Q QL
Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQL 164


>gi|308809381|ref|XP_003082000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
           [Ostreococcus tauri]
 gi|116060467|emb|CAL55803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
           [Ostreococcus tauri]
          Length = 467

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 172/365 (47%), Gaps = 21/365 (5%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ K +RV V +SGGVDSSV  ALL+  G++     LQ++           C   +D+  
Sbjct: 79  ESTKPLRVAVLLSGGVDSSVALALLRAAGHECRAFYLQIWFQEDFRNTWEECPWEEDLRV 138

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSV 132
           A  VC  + V        + + N V+         G TP P V CN  VKF    + L+ 
Sbjct: 139 AEGVCARVGVELETVPLTDAYWNLVVSDSVEEIRRGRTPNPDVLCNSRVKFGAFREWLAK 198

Query: 133 TRQLGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                 D +A+GHY    R  V   G+   +M    D  +DQ+YFL   TQ+QL  + FP
Sbjct: 199 AHPGEFDRVASGHYAAVERDAV--TGEASLVMS--GDAFKDQTYFLANLTQEQLRAVSFP 254

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           +G M K  +R LA    L  A + DSQ ICF+ + K+ + +   + G  + GDI+ +  G
Sbjct: 255 VGGMPKADIRSLATSAELPNAGRKDSQGICFLGKVKFSEFIAE-HLG-EMPGDIIEVETG 312

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHR--IYLRE 307
           ++LG+H     +TIGQR GL +  G P +V   D  N+   +     SL+  R    +  
Sbjct: 313 KVLGKHRAYWFHTIGQRSGLFL-HGGPWYVAGKDCVNNVVYVTRDYYSLDKSRDTFNVAG 371

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGV---YVDFEKSEVGVASGQ 363
            NW+     +   ++G +  VK+R  ++     F  +  DG     V   + + G+A GQ
Sbjct: 372 FNWISGKEPDLENIEGLR--VKVRHGENIYSCSFKFKEIDGERCGEVTINQDDQGLAPGQ 429

Query: 364 ACVFY 368
             VFY
Sbjct: 430 YAVFY 434


>gi|60680859|ref|YP_211003.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|253563325|ref|ZP_04840782.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
 gi|265762789|ref|ZP_06091357.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|81316073|sp|Q5LFN5|MNMA2_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|60492293|emb|CAH07058.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis NCTC 9343]
 gi|251947101|gb|EES87383.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
 gi|263255397|gb|EEZ26743.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 353

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 165/358 (46%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +  + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139
               ++  V D    + + V          G+TP P V CN+ +KF       +Q+G D 
Sbjct: 58  RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K 
Sbjct: 115 DLTATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG ++    G+ +G H 
Sbjct: 170 EVREIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIEFETGKKIGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V      E    Y   +++ N++ D 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            +E +  +    F KIR + + +   +  +++G  +   +   G+A GQ  V Y ++S
Sbjct: 287 PWEGSTGEEEVTF-KIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAES 343


>gi|224419182|ref|ZP_03657188.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT
           98-5491]
          Length = 190

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 24/207 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79
           +V++ MSGGVDSS  A LL++ GY V G+ L+L++  +            D Y  + ++ 
Sbjct: 3   KVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEK----------HDYYTRNIQKC 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++N+ + + D  E F+ +V   F  SY  G TP PC  CN  VKF+    + + LG +
Sbjct: 53  AESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCE 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +     +G+    + + +D  +DQSYFLF    + +  + FPLGD KKE 
Sbjct: 113 FVATGHYAQIK-----NGR----IAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEE 163

Query: 200 VRDLA-REMGL--DIADKSDSQDICFV 223
           ++ +A +E+     +    DSQ+ICFV
Sbjct: 164 IKPIALKELPWLGTLETYKDSQEICFV 190


>gi|313204968|ref|YP_004043625.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
 gi|312444284|gb|ADQ80640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
          Length = 353

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 170/360 (47%), Gaps = 25/360 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78
           M +   +SGGVDSSVV  +LK  GY     T  L+  +          C + +D+  A  
Sbjct: 1   MNIATLLSGGVDSSVVVHMLKESGY-----TPSLFYIKIGMDDDELLHCTSEEDIEMASL 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +      S  V D  + + + V+         G TP P V CN+ +KF       +++G 
Sbjct: 56  IARKYGCSLDVVDLHKDYWDNVVSYTIEKVKQGLTPNPDVMCNKLIKFG---VFEQRVGK 112

Query: 139 DV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D    ATGHY  +   +  +GK    +    D  +DQ+ FL      Q+  L FP+G + 
Sbjct: 113 DFDKTATGHYATT---LEKNGKV--YLSTAKDPIKDQTDFLAQINSLQVSKLMFPIGHLM 167

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K  VRD+A +  L  A + DSQ ICF+ +  Y D ++R        G IV L  G+ILG+
Sbjct: 168 KNEVRDIATKANLPSAKRQDSQGICFLGKVNYNDFIRRYLG--EKSGPIVELETGKILGK 225

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLG 312
           HNG   +T+GQR+GLG++ G P +V+  D  ++ V        E    Y   +R+ +++ 
Sbjct: 226 HNGYWFHTVGQRKGLGLS-GGPWYVIKKDVAANIVYASKGFDAEAQYGYEFSMRDFHFIT 284

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           D  +E+   +    F KIR + D     + +  +G  +   +   G+A GQ  V Y ++S
Sbjct: 285 DNPWENRRSEIDVTF-KIRHTPDFTKGKIIQTPEGYRLISTERLQGIAPGQFGVVYDAES 343


>gi|34540110|ref|NP_904589.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis W83]
 gi|81416613|sp|Q7MAW9|MNMA_PORGI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|34396421|gb|AAQ65488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas gingivalis W83]
          Length = 361

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 166/372 (44%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V   +SGGVDSSVV   L  +GY      +++    K       C A +D+     + 
Sbjct: 1   MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMEDKDGYI--DCPAEEDIELTTLIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   V D  + +   V+     +   G TP P + CN+ +KF            D 
Sbjct: 59  RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFG-CFEERWGYQFDR 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  + L  G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 118 IATGHYATTDLLNG-----KTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A   GL  A + DSQ ICF+ +  Y D ++R       EG I+ L  G+++GRH G 
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLG--KKEGRIIELETGKVIGRHQGY 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             +TIGQR+GLG++ G P FVV  D   + ++V      +       E+    D + EDA
Sbjct: 231 WFHTIGQRKGLGLS-GGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETF-DFITEDA 288

Query: 320 VVDGF-------KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              G+           KIR + +     + + + G  ++ E+   G+A GQ CV Y  D 
Sbjct: 289 YEAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIY--DE 346

Query: 373 NEARVLGGGIIS 384
           +     G G+I+
Sbjct: 347 DHHLCYGSGMIT 358


>gi|53712700|ref|YP_098692.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81608589|sp|Q64WG8|MNMA2_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|52215565|dbj|BAD48158.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis YCH46]
          Length = 353

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 164/358 (45%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +  + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139
               ++  V D    + + V          G+TP P V CN+ +KF       +Q+G D 
Sbjct: 58  RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K 
Sbjct: 115 DLTATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG ++    G+ +G H 
Sbjct: 170 EVREIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIEFETGKKIGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V      E    Y   +++ N++ D 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            +E +  +    F KIR + + +   +  +++G  +   +   G+A GQ  V Y ++S
Sbjct: 287 PWEGSTGEEEVTF-KIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAES 343


>gi|301162405|emb|CBW21950.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 638R]
          Length = 353

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 164/358 (45%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+     + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELCTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139
               ++  V D    + + V          G+TP P V CN+ +KF       +Q+G D 
Sbjct: 58  RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K 
Sbjct: 115 DLTATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG ++    G+ +G H 
Sbjct: 170 EVREIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIEFETGKKIGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V      E    Y   +++ N++ D 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            +E +  +    F KIR + + +   +  +++G  +   +   G+A GQ  V Y ++S
Sbjct: 287 PWEGSTGEEEVTF-KIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAES 343


>gi|188994230|ref|YP_001928482.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis ATCC
           33277]
 gi|229486420|sp|B2RHP0|MNMA_PORG3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188593910|dbj|BAG32885.1| putative tRNA 5-methylaminomethyl-2-thiouridylate
           5-methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 166/372 (44%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V   +SGGVDSSVV   L  +GY      +++    +       C A +D+     + 
Sbjct: 1   MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRI--GMEDEDGYIDCPAEEDIELTTLIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   V D  + +   V+     +   G TP P + CN+ +KF            D 
Sbjct: 59  RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFG-CFEERWGYQFDR 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  + L  G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 118 IATGHYATTDLLNG-----KTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A   GL  A + DSQ ICF+ +  Y D ++R       EG I+ L  G+++GRH G 
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLG--KKEGRIIELETGKVIGRHQGY 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             +TIGQR+GLG++ G P FVV  D   + ++V      +       E+    D + EDA
Sbjct: 231 WFHTIGQRKGLGLS-GGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETF-DFITEDA 288

Query: 320 VVDGF-------KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
              G+           KIR + +     + + + G  ++ E+   G+A GQ CV Y  D 
Sbjct: 289 YEAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIY--DE 346

Query: 373 NEARVLGGGIIS 384
           +     G G+I+
Sbjct: 347 DHHLCYGSGMIT 358


>gi|255008091|ref|ZP_05280217.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis 3_1_12]
 gi|313145808|ref|ZP_07808001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
 gi|313134575|gb|EFR51935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
          Length = 353

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 168/358 (46%), Gaps = 21/358 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +  + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139
               +   V D    + + V          G+TP P V CN+ +KF       +Q+G D 
Sbjct: 58  RRYGLELEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114

Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + ATGHY  + L +G+    +  +    D  +DQ+ FL      Q+  L FP+G + K 
Sbjct: 115 DLTATGHYATT-LQLGE----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG ++ L  G+ +G H 
Sbjct: 170 EVREIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIELETGKKIGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314
           G   +TIGQR+GLG+  G P FVV  D   + + V      +    Y   +++ N++   
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            ++D+  +    F KIR + + +   + ++ DG  +   +   G+A GQ  V Y ++S
Sbjct: 287 PWKDSTGEEDVTF-KIRHTPEFIKGRLIQDADGYRIISSEKLQGIAPGQFGVIYDAES 343


>gi|323344915|ref|ZP_08085139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oralis ATCC 33269]
 gi|323094185|gb|EFZ36762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oralis ATCC 33269]
          Length = 359

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 177/386 (45%), Gaps = 39/386 (10%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASK 62
           LN+ +L    K  ++ V +SGGVDSSVV   L R G      Y  IG   Q         
Sbjct: 2   LNAEEL----KGKKIAVLLSGGVDSSVVVYELVRLGLLPDCFYIKIGPEEQ--------- 48

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            +  C + +D+  A  V         + D  + + + V         AG TP P V CNR
Sbjct: 49  EQWDCSSEEDLEMATVVAARYGCRLEIVDCHKEYWSEVTRYTMDKVRAGFTPNPDVMCNR 108

Query: 123 TVKFSDLLSVTRQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            +KF    +   ++G   D++ATGHY ++ +     G ++ ++  P D  +DQ+ FL   
Sbjct: 109 LIKFG---AFDDKVGHRYDLIATGHYAQTEMI----GGKKWLVTSP-DPVKDQTDFLAQI 160

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
              QL    FP+G   K+ VR++A    L  A + DSQ ICF+ +  Y D ++R      
Sbjct: 161 YNWQLRKALFPIGHYMKDEVREIAEHEHLINAKRKDSQGICFLGKINYNDYIRRFLG--E 218

Query: 241 LEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
             GD++ L  G+ +G H G+  +TIGQR GLG   G P + +   K+ ++ ++   +  E
Sbjct: 219 NPGDVIELETGRKIGMHRGLWFHTIGQRHGLGFG-GGPWYAI--KKDVAQNVLYVSKGYE 275

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-G 358
               + ++   + D  F    VD      KIR + +     +++  +G Y      ++ G
Sbjct: 276 PQTAFQQDFK-VHDFHFLTEPVDMKHVTFKIRHTPEYHSALLEKTAEGAYTVHSTEQIQG 334

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           VA GQ CV Y  D    R  G G I+
Sbjct: 335 VAPGQFCVVY--DEQHHRCFGSGEIT 358


>gi|225163879|ref|ZP_03726173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutaceae bacterium TAV2]
 gi|224801524|gb|EEG19826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutaceae bacterium TAV2]
          Length = 369

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 151/376 (40%), Gaps = 72/376 (19%)

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           QD+ DARRV D + +   V +  + +R+ V+      Y  G TP P + CNR +KF    
Sbjct: 4   QDIEDARRVADQLGIPFRVVNLMDEYRDRVVAYLLDGYRRGLTPNPDIMCNREIKFGVFR 63

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRI--------MCRPMDLERDQS-------- 174
           +  R  G   +ATGHY R R+ +                 + +P      QS        
Sbjct: 64  AWARDHGFTAVATGHYAR-RVPLSAADTAPAACASTVGASLAKPASANNAQSAIVAPSGC 122

Query: 175 --------------------------YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                                     YFL   TQ QL D RFP+GD++K  +R LARE G
Sbjct: 123 AGFASEAPAPSAWALHEGADPNKDQSYFLALLTQAQLADARFPIGDIEKPELRRLAREAG 182

Query: 209 LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGIINYTIGQR 267
           L  ADK DSQ ICF+ Q K  D +++        G IV    Q I+G H G+  +T+GQR
Sbjct: 183 LATADKKDSQGICFIGQVKMQDFLRQYVPDN--PGPIVRATDQRIIGEHRGLHYFTLGQR 240

Query: 268 RGLGVAMG---------------EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+GV                    LFV +   ++  +    +  + VH +     +   
Sbjct: 241 KGIGVPSNTDNKAYVVTGKRSDDNTLFVAFDGADAPGLF---QTEVRVHSLQWNTPDGAP 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFY 368
                           ++R     +P+ +    D      ++ FE  + G+ASGQ    Y
Sbjct: 298 PAFLTSGGPGPHALEGRVRYRDPRIPLTITLTPDLAPATAHIRFETPQRGLASGQILALY 357

Query: 369 TSDSNEARVLGGGIIS 384
                  R+LGG + +
Sbjct: 358 AG----PRLLGGAVYT 369


>gi|114686943|ref|XP_001137340.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 isoform 1 [Pan troglodytes]
          Length = 390

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 130/267 (48%), Gaps = 39/267 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHY---------IRSRLYVGDDGKRRRIMC--------------RPMDLERDQSYFL 177
           +ATGHY         +R+RL++       +++C              +  D  +DQ++FL
Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV---- 232
              +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +    
Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242

Query: 233 -KRINAGIALEGDIVHLNGQILGRHNG 258
             R    I++E      + ++LG H G
Sbjct: 243 QPRPGHFISIE------DNKVLGTHKG 263


>gi|298384487|ref|ZP_06994047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298262766|gb|EFI05630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 355

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 22/359 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +  + 
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIEMSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +S  V D  + +   V          G TP P V CN+ +KF       +Q+G   
Sbjct: 58  RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATT---IRQDGKTW--LGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ +G H 
Sbjct: 170 EVREIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EREGAIIELETGKKVGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V     +E        + + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITEN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372
           L++DA  +      KIR + +     + + + G +      ++ G+A GQ  V Y  ++
Sbjct: 287 LWKDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEA 344


>gi|307564524|ref|ZP_07627065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella amnii CRIS 21A-A]
 gi|307346884|gb|EFN92180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella amnii CRIS 21A-A]
          Length = 387

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 174/397 (43%), Gaps = 48/397 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76
           K  ++ V +SGGVDSSVV   L R     IG+    Y  +   K   +  C + +D+  A
Sbjct: 7   KHKKIAVLLSGGVDSSVVVWELAR-----IGLHPDCYYIKIGPKEADQWDCTSEEDLEMA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V         V D  + +   V          G TP P V CNR +KF       +  
Sbjct: 62  TAVAKRFGCKLEVVDCHKEYWGEVTKYTMDKVRVGLTPNPDVMCNRLIKFGAFYK-KKGH 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D++ATGHY +++     DGK+   +C   D  +DQ+ FL      QL    FP+G   
Sbjct: 121 EYDLIATGHYAQTKWI---DGKK--WLCTSPDAVKDQTDFLSQIYPWQLQKAIFPIGHYA 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K+ VR +A    L  A + DSQ ICF+    Y + V+R       +GDI+    G+ +G 
Sbjct: 176 KDEVRRIAEREHLINAARKDSQGICFLGNIDYNEYVRRYLG--ESKGDIIEKETGKKIGE 233

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWL- 311
           H G+  +TIGQR+GLG+  G P FVV  D  +N   V  G    L   R + +  ++WL 
Sbjct: 234 HKGLWFHTIGQRKGLGLGGG-PWFVVSKDVERNVLYVSHGYDPELAYKRSFKVLGLHWLT 292

Query: 312 -----------GDGLFEDAVVDGFKCFV----KIRSSQDPVPVFVQ---------RNDDG 347
                      G GL ED  ++     +    KIR + +    F++             G
Sbjct: 293 PEGLELFEGKDGVGLQEDLSIESHTRLIPITFKIRHTPEYHKGFLEVGSTKEALAEGGSG 352

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           V +  ++   GVA GQ CV Y  D    R  G G I+
Sbjct: 353 V-IHSQQKIHGVAPGQFCVIY--DEQHDRCYGSGEIT 386


>gi|160883313|ref|ZP_02064316.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483]
 gi|156111297|gb|EDO13042.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483]
          Length = 355

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 163/362 (45%), Gaps = 26/362 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +    G     +  +    DL +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDLVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H 
Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETGKKLGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +  ++  +D      KIR + D      +Q  +   Y+   +   G+A GQ  V Y  +
Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFYILSSEKLQGIAPGQFGVIYDEE 343

Query: 372 SN 373
           + 
Sbjct: 344 AK 345


>gi|212550689|ref|YP_002309006.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548927|dbj|BAG83595.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 355

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 32/374 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++   +SGGVDSSVV   LK  GYD +   +Q+    + ++    C + +D+     + 
Sbjct: 1   MKIAALVSGGVDSSVVVHQLKDMGYDPVIFYIQI--GMENNEGYIDCSSEEDIEITTFIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +   ++ +   +I     +   G TP P + CN+ +KF  +         D 
Sbjct: 59  RKYGCRIEIVSLQKEYWENIIAYTIDTVHRGLTPNPDIMCNKLIKFG-IFEQRWGYEFDK 117

Query: 141 LATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY     I   +Y          +    D  +DQ+YFL      Q+  L FP+G +
Sbjct: 118 IATGHYATTTEINDEIY----------LSTAFDKVKDQTYFLGQIDYLQISKLMFPIGHL 167

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K  VR +A +  L  A + DSQ ICF+ +  Y + ++R   G  L G IV L  G+ILG
Sbjct: 168 QKSEVRIIAAKQDLPSAFRKDSQGICFLGKINYSNFIRRY-LGEKL-GKIVELETGKILG 225

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWL 311
            H G   YTIGQR+GL ++ G P FV+  D   + V V      ++     + L  ++++
Sbjct: 226 NHKGYWFYTIGQRKGLYLS-GGPWFVIKKDVQQNIVFVSNDYKSKIRYSKSLNLERVHFI 284

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVY-VDFEKSEVGVASGQACVFYT 369
              +F+D  +D  +   KIR +  P   F + R+   VY ++ E    G+A+GQ  V Y 
Sbjct: 285 TRNIFDD-FIDTKEIAFKIRHT--PKFTFGKIRHIGNVYRIESESKIQGIAAGQFGVIY- 340

Query: 370 SDSNEARVLGGGII 383
            D      LG G+I
Sbjct: 341 -DKRCKLCLGSGVI 353


>gi|224540371|ref|ZP_03680910.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518022|gb|EEF87127.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 353

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 135/275 (49%), Gaps = 17/275 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L              C A +D   A  + 
Sbjct: 1   MNISVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGMDGTDYMDCSAEEDWEMATAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +   + D ++ +   V          G TP P V CNR +KF       +++G   
Sbjct: 58  HRYGLPLEMVDLQKEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFG---CFEQKVGKEF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +   V  DGK    +   +D  +DQ+ FL      Q+  L FPLG + K+
Sbjct: 115 DFIATGHYATT---VHKDGKV--WLGIAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+AR  GL  A + DSQ ICF+ +  Y D V+R       +GDI+ L  G+ +G H 
Sbjct: 170 EVRDIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLG--ERQGDIIELETGKKIGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
           G   +TIGQR+GLG++ G P FV+  D  ++ + V
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDVEANVLYV 261


>gi|256752921|ref|ZP_05493754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748201|gb|EEU61272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 172

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 6/148 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           RV + MSGGVDSSV A LLK+ G+DVIG+T++++  +  KA     SCC+ +   DA++V
Sbjct: 29  RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAKKV 88

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + HY  D  + F + ++  F + Y  G TP PCV CNR +KF +LL    +LGA 
Sbjct: 89  AEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 148

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPM 167
            +ATGHY+R       D K +R + + +
Sbjct: 149 YIATGHYVRKEY----DEKTKRYLLKKV 172


>gi|237725261|ref|ZP_04555742.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D4]
 gi|265754225|ref|ZP_06089414.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|229436527|gb|EEO46604.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4]
 gi|263234934|gb|EEZ20489.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 354

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 24/359 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +   +SGGVDS+VV  LL + GY  D+  + + +      +     C A +D+     
Sbjct: 1   MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 ++  + D   ++ + V+         G TP P V CN+ +KF         L  
Sbjct: 56  TARKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-Y 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY      +  DGK    +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYAS---ILEKDGKIW--LGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y D ++R       EG I+ +  G+ +G H 
Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLG--EKEGAIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D N + + V      E        L + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITED 286

Query: 315 LFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           L+E D+ VD      KIR +   +   + R +    +   +   G+A GQ  V Y  D+
Sbjct: 287 LWEGDSPVD---ISFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342


>gi|237707989|ref|ZP_04538470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|229457975|gb|EEO63696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
          Length = 354

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 24/359 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +   +SGGVDS+VV  LL + GY  D+  + + +      +     C A +D+     
Sbjct: 1   MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 ++  + D   ++ + V+         G TP P V CN+ +KF         L  
Sbjct: 56  TARKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-Y 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY      +  DGK    +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYAS---ILEKDGKIW--LGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y D ++R       EG I+ +  G+ +G H 
Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLG--EKEGAIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D N + + V      E        L + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITED 286

Query: 315 LFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           L+E D+ VD      KIR +   +   + R +    +   +   G+A GQ  V Y  D+
Sbjct: 287 LWEGDSPVD---VSFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342


>gi|29345565|ref|NP_809068.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81587200|sp|Q8ABF5|MNMA1_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|29337457|gb|AAO75262.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 355

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 22/359 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +  + 
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIEMSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +S  V D  + +   V          G TP P V CN+ +KF       +Q+G   
Sbjct: 58  RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATT---IRQDGKT--WLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ +G H 
Sbjct: 170 EVREIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EREGAIIELETGKKVGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V     +E        + + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITEN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372
            ++DA  +      KIR + +     + + + G +      ++ G+A GQ  V Y  ++
Sbjct: 287 PWKDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEA 344


>gi|260912505|ref|ZP_05919040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633384|gb|EEX51539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 358

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 163/381 (42%), Gaps = 51/381 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ V +SGGVDSSVV     R G       +++         +  C + +D+  A  V  
Sbjct: 10  KIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKI---GPEEAEEWDCASEEDLEMATAVAK 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                  V D  + +   V         AG TP P V CNR +KF       R    D++
Sbjct: 67  RFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFG-AFHEKRGHEYDLI 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DGK+  ++  P D  +DQ+ FL      QL    FP+G  +K  VR
Sbjct: 126 ATGHYAQTEWI---DGKKW-LVTSP-DPVKDQTDFLAQIYDWQLQKAIFPIGHYQKGEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNG 258
           ++A    L  A + DSQ ICF+ +  Y D ++R    N G  LE +    + + +G H G
Sbjct: 181 EIAEREHLINAKRKDSQGICFLGKINYNDYIRRFLGENPGEVLELE----SEKKIGMHRG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREINW 310
           +  +TIGQR GLG   G P + V  D   + + V          ++  +VH ++L     
Sbjct: 237 LWFHTIGQRHGLGFGGG-PWYAVKKDVERNVLFVSKGYEPATAYKKGFKVHDLHLL---- 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ-------DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
                   A +DG     KIR +        +P+P      D G  V  E    GVA GQ
Sbjct: 292 -------TAPLDGLDVTFKIRHTPEYHRAQLEPLP------DGGYIVHAEAPMQGVAPGQ 338

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
            CV Y  D    R  G   I+
Sbjct: 339 FCVIY--DKEHHRCFGSAEIA 357


>gi|253571710|ref|ZP_04849116.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
 gi|251838918|gb|EES67003.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
          Length = 355

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 22/359 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +  + 
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIEMSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +S  V D  + +   V          G TP P V CN+ +KF       +Q+G   
Sbjct: 58  RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATT---IRQDGKT--WLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ +G H 
Sbjct: 170 EVREIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EREGAIIELETGKKVGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V     +E        + + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDIEENIIYVSHGYGVETQFGSEFRINDFHFITEN 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372
            ++DA  +      KIR + +     + + + G +      ++ G+A GQ  V Y  ++
Sbjct: 287 PWKDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEA 344


>gi|285921169|gb|ADC39900.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921181|gb|ADC39906.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921193|gb|ADC39912.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + + +++ D +E F+N 
Sbjct: 3   LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++C  +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLICTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|321265027|ref|XP_003197230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptococcus gattii WM276]
 gi|317463709|gb|ADV25443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Cryptococcus gattii WM276]
          Length = 469

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 179/402 (44%), Gaps = 46/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVI--------------------GVTLQLYNSR- 58
            V V MSGGVDS+    +L+      DVI                          Y+S  
Sbjct: 71  HVTVGMSGGVDSATTLRILREFPIHLDVIFMRNWDPLLSESPPESSSSPSSISLAYSSTS 130

Query: 59  --KASKRKGSCCAGQDVYDARRVCDTINV---SHYVFDYEERFRNAVIVPFASSYAAGET 113
                     C   +D  D  +V   + +   S  + D  + + + V  P    +  G T
Sbjct: 131 PINGEPNLSPCQWERDWNDVLKVATQVGIPKDSIRLVDLSKEYWSRVFEPAVGVWERGGT 190

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P P VDCNR +KF  LL V  +     LATGHY R   +    G  +  + R  D  +DQ
Sbjct: 191 PNPDVDCNREIKFGALLDVLPKKDRHFLATGHYGRV-AHPPHLGVSK--LLRATDQSKDQ 247

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVV 232
           +Y+L   T+ QL     PLG + K  VR LA   GL  A K +S  +CF+ ++GK+ D +
Sbjct: 248 TYYLSQMTEPQLSRAILPLGGLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFGDFI 307

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL---DKNSSR 289
            +  +     G +++L+G+ L  H G+  YT+GQR  +   + +P+FV      +K +  
Sbjct: 308 SQYTSPPE-PGYLINLSGERLAEHKGLWYYTVGQRARVANQL-KPMFVAKKGVGEKGTDI 365

Query: 290 VIV-GPRESLEVHR-IYLREINWLGDGLFEDAV-VDGFKCFVKIRSSQDPVP--VFVQRN 344
           ++V GP   + + + ++  + +W+      + +  +  K  +++R   +PV   + V  +
Sbjct: 366 LVVPGPDHPMLLCKDVHTSDFHWIHRTFPREQLDKEPEKVGIQVRHRMNPVGGRIVVGND 425

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
              V V+F +S  GV+ GQ    +     +   LG G I G+
Sbjct: 426 IKNVTVEFNESIAGVSPGQVVAVWF----DGWCLGSGFIKGT 463


>gi|189466604|ref|ZP_03015389.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM
           17393]
 gi|189434868|gb|EDV03853.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM
           17393]
          Length = 353

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 128/267 (47%), Gaps = 17/267 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY     +L              C A +D   A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGMDGAEFMDCSAEEDWEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138
               +   + D +  +   V          G TP P V CNR +KF       +++G   
Sbjct: 58  RRYGLPLEMIDLQNEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFG---CFEQKVGKEF 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY  +   V  DGK    +   +D  +DQ+ FL      Q+  L FPLG + K+
Sbjct: 115 DFTATGHYATT---VSKDGKI--WLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+AR  GL  A + DSQ ICF+ +  Y D V+        EGDIV   +G+ +G H 
Sbjct: 170 EVRDIARTAGLPTARRRDSQGICFLGKINYNDFVRHFLG--EREGDIVEWESGKKIGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLD 284
           G   +TIGQR+GLG++ G P FV+  D
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKD 253


>gi|212690555|ref|ZP_03298683.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855]
 gi|212666904|gb|EEB27476.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855]
          Length = 354

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 24/359 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +   +SGGVDS+VV  LL + GY  D+  + + +      +     C A +D+     
Sbjct: 1   MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 ++  + D   ++ + V+         G TP P V CN+ +KF         L  
Sbjct: 56  TARKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-Y 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY      +  DGK    +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYAS---ILEKDGKLW--LGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y D ++R       EG I+ +  G+ +G H 
Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLG--EKEGAIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D + + + V      E        L + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITED 286

Query: 315 LFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           L+E D+ VD      KIR +   +   + R +    +   +   G+A GQ  V Y  D+
Sbjct: 287 LWEGDSPVD---VSFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342


>gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bergensis DSM 17361]
 gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bergensis DSM 17361]
          Length = 384

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 171/394 (43%), Gaps = 45/394 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L   G       +++       K +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYELASHGLHPDCFYIRI---GPEEKEEWDCNSEEDMEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         +G TP P V CNR +KF    +   + G 
Sbjct: 64  VAKRFGCKLQVVDCHQEYWSQVTRYTMEKVRSGFTPNPDVMCNRLIKFG---AFDEKAGH 120

Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D  ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +
Sbjct: 121 DYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIEGWQLKKAIFPIGHYE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K  VR++A    L  A + DSQ ICF+    Y + V+R        GDIV L  G  +G 
Sbjct: 176 KNEVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLG--EQPGDIVELETGTKIGE 233

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           H+G   +TIGQR+GLG++ G P FV+  D   + + V      E+       + +++WL 
Sbjct: 234 HSGHWFHTIGQRKGLGLSGG-PWFVIKKDVEHNVLYVSHGYDPETAYKKDFKIHDLHWLT 292

Query: 313 D------GLFEDAVVDGFKCFV----KIRSSQDPVPVFVQRN------------DDGVYV 350
           +       L E +       ++    KIR + +  P ++  N            D     
Sbjct: 293 EEPTPPHHLSEASESQKPGSYIPITFKIRHTPEYHPGYLDLNAASSSDHTELTGDTATIH 352

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             +K   GVA GQ CV Y  D    R  G G I+
Sbjct: 353 SLDKIH-GVAPGQFCVIY--DEQHHRCFGSGEIT 383


>gi|150002999|ref|YP_001297743.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
 gi|254883647|ref|ZP_05256357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 4_3_47FAA]
 gi|294775633|ref|ZP_06741142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|319642281|ref|ZP_07996940.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
 gi|205810256|sp|A6KXF7|MNMA1_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|149931423|gb|ABR38121.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus ATCC 8482]
 gi|254836440|gb|EET16749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 4_3_47FAA]
 gi|294450575|gb|EFG19066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|317386137|gb|EFV67057.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
          Length = 354

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 168/374 (44%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +   +SGGVDS+VV  LL   GY  D+  + + +      +     C A +D+     
Sbjct: 1   MNIAALISGGVDSAVVVHLLCEQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +S  + D   ++ + V+         G TP P V CN+ +KF         L  
Sbjct: 56  TARKYGLSLNIIDLHRQYWDNVVAYAIDKVKRGLTPNPDVMCNKLIKFGCFEQEAGHL-Y 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY      +  DGK    +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYAS---ILEKDGKIW--LGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y + ++R       EGDI+ +  G+ +G H 
Sbjct: 170 EVRDIARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLG--EKEGDIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINWLG 312
           G   +TIGQR+GLG+  G P FV+  D + + + V      +  + Y     L + +++ 
Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVIRKDIDENIIYV--SHGYDTDKQYGTDFALHDFHFIT 284

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           + L++ A         KIR +   +   + R D+   +       G+A GQ  V Y  D 
Sbjct: 285 EDLWKGA--PSADVSFKIRHTDTFMKGILTREDNLFRIHSHVPLQGIAPGQFGVLY--DK 340

Query: 373 NEARVLGGGIISGS 386
           N    +G G I+ S
Sbjct: 341 NAEICVGSGEITLS 354


>gi|126653986|ref|ZP_01725821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
 gi|126589503|gb|EAZ83646.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
          Length = 137

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 3/133 (2%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++P  +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  D
Sbjct: 5   RDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYDD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L     
Sbjct: 62  VIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 121

Query: 136 LGADVLATGHYIR 148
           LGAD LATGHY R
Sbjct: 122 LGADYLATGHYAR 134


>gi|237722379|ref|ZP_04552860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|299146396|ref|ZP_07039464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|229448189|gb|EEO53980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|298516887|gb|EFI40768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 355

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 162/362 (44%), Gaps = 26/362 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H 
Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETGKKLGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +  ++  +D      KIR + D      +Q  +   ++   +   G+A GQ  V Y  +
Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343

Query: 372 SN 373
           + 
Sbjct: 344 TK 345


>gi|126642475|ref|YP_001085459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii ATCC 17978]
 gi|126388359|gb|ABO12857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii ATCC 17978]
          Length = 265

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 137/260 (52%), Gaps = 20/260 (7%)

Query: 136 LGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LGAD +ATGHY R +       G+    + R +D  +DQ+YFL A   +++    FP+G+
Sbjct: 3   LGADFIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGE 62

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G
Sbjct: 63  IEKPEVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVG 120

Query: 255 RHNGIINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H+G++ YT+         G+  A     FV++ D  ++R++VG       ++  +++  
Sbjct: 121 EHHGLMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSE 180

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
            I+W+     ++   +G +C  K R  Q      VF+  N + GV V+F++ +  V  GQ
Sbjct: 181 AIDWVAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQ 238

Query: 364 ACVFYTSDSNEARVLGGGII 383
           + VFY+ +      LGGG+I
Sbjct: 239 SVVFYSDEV----CLGGGVI 254


>gi|293369466|ref|ZP_06616049.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|292635464|gb|EFF53973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 355

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 162/362 (44%), Gaps = 26/362 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H 
Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETGKKLGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +  ++  +D      KIR + D      +Q  +   ++   +   G+A GQ  V Y  +
Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343

Query: 372 SN 373
           + 
Sbjct: 344 AK 345


>gi|307107356|gb|EFN55599.1| hypothetical protein CHLNCDRAFT_35486 [Chlorella variabilis]
          Length = 418

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 165/385 (42%), Gaps = 46/385 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVY- 74
           +  RV V +SGGVDS+V A LL+  GY+V+GV ++ ++  + +  +   G C A      
Sbjct: 12  RGRRVAVGISGGVDSAVAALLLQWQGYEVVGVFMRNWDEGEETGNQNCSGGCPAAHRGGM 71

Query: 75  -------DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                    +  C        VF             F +    G TP P + CNR +KF 
Sbjct: 72  RGFRRGAPGQAACAAGPTGLGVFSE-----------FLAQCGRGLTPNPDLACNRHIKFD 120

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            LLS   QLGA ++ATGHY R     G  G     + R  D  +DQSYFL +     L  
Sbjct: 121 ALLSFAGQLGAGLVATGHYARLAPGGGGGGGGGVSLLRGADRLKDQSYFLASVQPAALRR 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FP+G + K  VR LA   GL  ADK  S  ICF+ +  +   + +  A   L G  V 
Sbjct: 181 VLFPVGHLSKAEVRRLAAAAGLATADKRSSAGICFIGRRNFAAFLGQYLA--PLPGRYVD 238

Query: 248 L-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           + +G +LG    +   T GQR G+G A  E ++ V  D     V V       +L     
Sbjct: 239 VGSGAVLGTCPDLAAVTHGQRPGIGGAP-ERVYAVGKDVVERVVYVAQGRGHPALLCTTA 297

Query: 304 YLREINWLGDGLFEDAVVDGF-KCFVKIRSSQDPVP-----------VFVQRNDD---GV 348
            LR  +WL  G        G+ +C  K R  Q P P             +Q  D    G 
Sbjct: 298 LLRTPHWLSAGHAAQLAAQGWLRCQYKARYGQQPRPSERLGFRPSAYCRLQPQDSRMLGS 357

Query: 349 Y--VDFEKSEVGVASGQACVFYTSD 371
           Y  V F++  V +   QACV Y  +
Sbjct: 358 YLVVRFDEPGVAITPQQACVLYDGE 382


>gi|307103568|gb|EFN51827.1| hypothetical protein CHLNCDRAFT_139672 [Chlorella variabilis]
          Length = 417

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 176/387 (45%), Gaps = 26/387 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  +     + V + +SGGVDSS+   LL   G+ V    LQ++         G+C   +
Sbjct: 44  LGCEPGAAPLTVALLLSGGVDSSLALHLLVAAGHRVTAFYLQIWFQEDFRNFWGACPWEE 103

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---D 128
           D+   R VC+ + V   V    E++ + V+    +    G TP P V CN  VKF    +
Sbjct: 104 DLEYCRAVCERLGVELQVVPLTEQYWDRVVAHCITEIRHGRTPNPDVLCNSRVKFGAFYE 163

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            LS       D +A+GHY  +RL         R+   P D  +DQ+YFL   +Q QL   
Sbjct: 164 HLSAQAIGTFDRIASGHY--ARLERPGTAAAARLALTP-DAIKDQTYFLAHLSQHQLARA 220

Query: 189 RFPLGDMKK-----ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            FPLG + K      SVR LA    L    + DSQ ICF+ + K+ + +++        G
Sbjct: 221 LFPLGHLTKPQARGSSVRALAAAADLPNKARKDSQGICFLGKVKFNEFIRKHLG--EWPG 278

Query: 244 DIV-HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
            IV   + +++G H+G   +T+GQR+G+ ++ G P +V     +++ V V  R+  E  +
Sbjct: 279 PIVEEESNEVVGFHHGFWFHTVGQRKGIALS-GGPWYVTRKHPDTNVVYVS-RQYHESDK 336

Query: 303 I----YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358
           +         +W G    + + +    C V+         + ++      +V    ++ G
Sbjct: 337 LRNSFSCHSFSWCGVARPDPSRL--LYCKVRHGPHMYACQLSLEPGGGAGHVVLGGNDQG 394

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           +A+GQ  VFY     +   LG  +I+G
Sbjct: 395 LAAGQYAVFY----QDGACLGSAVIAG 417


>gi|313887221|ref|ZP_07820916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923312|gb|EFR34126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 376

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 31/366 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDV 73
           P+D R+ +  SGGVDSSV   LL   G+        LY  R   + +      C A +D+
Sbjct: 10  PRDSRIALLASGGVDSSVAMHLLVEAGFRP-----DLYYIRIGMQDEDGGYLDCPAEEDI 64

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                +    ++   V D  + + + V+     +   G TP P V CN+ +KF    +  
Sbjct: 65  ELVTLLARRYDLHLEVIDLHKLYWDRVVTYTMDAVKRGLTPNPDVMCNKLIKFG---AFE 121

Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + G+  D +ATGHY   R       +    +    D  +DQ+ FL     +Q+  L FP
Sbjct: 122 ERCGSSYDYIATGHYATIR----KTAEGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFP 177

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNG 250
           +G + KE VR +A E  L  A + DSQ ICF+ Q  Y D ++R        GDI+ H  G
Sbjct: 178 IGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLG--TQTGDIIDHETG 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLR 306
           + +G H G   +TIGQR+GLG++ G P +VV  D   + +       P+       I   
Sbjct: 236 EKIGEHRGYWFHTIGQRKGLGLS-GGPWYVVAKDVEHNVLYASRGYDPKTQYGT-IIETE 293

Query: 307 EINWLG--DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASG 362
           E++WL     L+ +   D   +   KIR + D     ++R   G Y       + G+A+G
Sbjct: 294 EMHWLTVDPWLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVSSEPIQGIAAG 353

Query: 363 QACVFY 368
           Q    Y
Sbjct: 354 QFATIY 359


>gi|288928497|ref|ZP_06422344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331331|gb|EFC69915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 353

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 164/379 (43%), Gaps = 47/379 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ V +SGGVDSSVV     R G       +++         +  C + +D+  A  V  
Sbjct: 5   KIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKI---GPEETEEWDCASEEDLEMATAVAK 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                  V D  + +   V         AG TP P V CNR +KF       R    D++
Sbjct: 62  RFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFG-AFHEKRGHEYDLI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++      DGK+  ++  P D  +DQ+ FL      QL    FP+G  +K  VR
Sbjct: 121 ATGHYAQTEWI---DGKKW-LVTSP-DPVKDQTDFLAQIYDWQLRKALFPIGHYQKGEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260
           ++A    L  A + DSQ ICF+ +  Y + ++R        G+++ L  +  +G H G+ 
Sbjct: 176 EIAEREHLINAKRKDSQGICFLGKINYNEYIRRFLG--EKPGEVLELETEKKIGMHRGLW 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREINWLG 312
            +TIGQR GLG   G P + V  D   + + V          ++  +VH  +L ++    
Sbjct: 234 FHTIGQRHGLGFGGG-PWYAVKKDVERNVLFVSKGYEPATAYKKDFKVH--HLHQLT--- 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-------DPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
                 A +DG     KIR +        +P+P      D G  V  E+   GVA GQ C
Sbjct: 288 ------APLDGLDVTFKIRHTPEYHRAQLEPLP------DGGYIVHAEEPMQGVAPGQFC 335

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  D    R  G   I+
Sbjct: 336 VIY--DKEHHRCFGSAEIA 352


>gi|224014905|ref|XP_002297114.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968233|gb|EED86582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 509

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 169/401 (42%), Gaps = 42/401 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDAR 77
           R+VVAMSGGVDSS    ++ +  DG +VIG+ +  +N+          +    ++  DA+
Sbjct: 96  RIVVAMSGGVDSSYTTIIMYKICDGIEVIGLHMSNWNALDEDPDISNATNTREKEYTDAQ 155

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136
            V   +++  +   +   +   V  PF  S A    P P   CN  +KF  +      Q+
Sbjct: 156 SVAQHLSIPLHRVSFASEYWIQVFEPFVESLAELTMPNPDYGCNTFIKFGAMKKYAMGQM 215

Query: 137 GADVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            AD +ATGHY  +  R Y GD+           D  +DQSYFL     +   ++ FPLG 
Sbjct: 216 NADFVATGHYAQLWHRGYTGDNDSSGVFP----DRSKDQSYFLSGVKGEAFRNVIFPLGH 271

Query: 195 MKK----ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN- 249
           + K    ++VRD+A +  +  A K DS  ICF+ +  +   V +        G  V ++ 
Sbjct: 272 LAKSQTQQTVRDIAHQAAIPTASKRDSMGICFIGKRNFGQFVSQYLPEPPAPGTFVDVDT 331

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI- 308
           G+I+G H G ++YTIGQ   +  A                  V    S     +Y  E+ 
Sbjct: 332 GEIVGYHEGSMHYTIGQGAKISGASARYFVCGKGSTGDDGNTVFVCNSTHHPSLYTDELS 391

Query: 309 ------NWLGDGLFEDA---------VVDG--FKCFVKIRSSQD--PVPVFVQRNDDG-- 347
                 NW+G G   D          +V+G   K   + R  Q      V  QR+ D   
Sbjct: 392 VDFDAFNWIGLGEKSDTDSFGHVPYPLVEGRPIKLLARTRHLQPLAQCTVSWQRSRDANS 451

Query: 348 ---VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
              + V FEK    +   Q    Y + S+    LGGG I G
Sbjct: 452 LGKLTVQFEKPMRAITPCQVVSLY-AGSDGLICLGGGPIKG 491


>gi|330722024|gb|EGG99950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC2047]
          Length = 222

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 19/227 (8%)

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG 226
           MD  +DQSYFL A  +QQL    FP+G+++K  VR++A +  L   +K DS  ICF+ + 
Sbjct: 1   MDKNKDQSYFLHAVPEQQLAKTFFPIGELEKPRVREIAEQHDLVTHNKKDSTGICFIGER 60

Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV 281
           ++ D +K+     A  GDIV  + +++G+H G++ +TIGQR+GLG+   +     P +V 
Sbjct: 61  RFRDFLKQYIP--AQPGDIVTPDNEVIGKHQGLMYHTIGQRQGLGIGGMQGKDESPWYVA 118

Query: 282 --YLDKNSSRVIVGPRE-SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338
             YLD N    + G    +L    +    ++W+            F+C  KIR  Q    
Sbjct: 119 DKYLDTNQLLAVQGKNHPALFAPSLLAEGVSWING----SPPAKQFRCTAKIRYRQSDQR 174

Query: 339 VFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             V   D+G  +V F++ +  VA GQ+ VFY  +      LGGG+I+
Sbjct: 175 CEVVVKDNGHCHVIFDEPQRAVAPGQSVVFYIDEV----CLGGGVIT 217


>gi|47215507|emb|CAG01169.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 387

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 163/394 (41%), Gaps = 64/394 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV AMSGGVDSSV A LLKR GY+V GV ++ ++       +G C A +D  DA RVC 
Sbjct: 6   HVVCAMSGGVDSSVAALLLKRRGYNVTGVFMKNWD---LLDERGVCAAEKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +   Y + + + V     + Y  G TP P + CN+ +KF+             +
Sbjct: 63  ILDIPFHQVSYVKEYWHKVFSDLLNEYEKGRTPNPDILCNKHIKFNHFYK-------HAI 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            T   + +RLY G D              +DQ++FL   +Q+ L    FPL  + K  V+
Sbjct: 116 NT---LSARLYKGADHL------------KDQTFFLSQISQEALRQTIFPLAGLTKSFVK 160

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN-- 257
            +A E G   +  + +S  ICF+ +  + + +  +       G+ V + +G + G H   
Sbjct: 161 KIAAEAGFHHVLKRKESMGICFIGERNFENFI--LEYLEPKPGNFVSVEDGTVKGAHKGR 218

Query: 258 -----------------------GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                                  G    T+GQR  +G    +  FVV  D  +  V+V P
Sbjct: 219 RVLCVSSDSCVFTFTHAFVCVPPGWFTLTLGQRARIG-GQKDAWFVVDKDIATGDVLVAP 277

Query: 295 ---RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349
                +L    +     +W+ GD   E A     +C  +        P  V  N DG V+
Sbjct: 278 TTNHPALYRDTVRTARFHWIAGDPPVELARTQMMECHFRFIHQMPLTPCTVTLNLDGSVW 337

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +        +  GQ  V Y  D      LG G I
Sbjct: 338 ISLSHPVRALTPGQYAVLYKGDE----CLGSGKI 367


>gi|237715861|ref|ZP_04546342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|262407475|ref|ZP_06084023.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294646866|ref|ZP_06724487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294808901|ref|ZP_06767630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229443508|gb|EEO49299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|262354283|gb|EEZ03375.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|292637811|gb|EFF56208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294443943|gb|EFG12681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 355

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 162/360 (45%), Gaps = 26/360 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MEIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATT---LQRDGKTW--LGTAKDPVKDQTDFLAQIDYLQVSKLIFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ +G H 
Sbjct: 170 EVREIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLG--EKEGAIVELETGKKVGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +  ++  VD      KIR + +      +Q  +   ++   +   G+A GQ  V Y  +
Sbjct: 287 PWKGQEKEVD---IIFKIRHTPEFTKGKLIQEGEKLFHILSSEKLQGIAPGQFGVIYDEE 343


>gi|332176817|gb|AEE12507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 379

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 31/366 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDV 73
           P+D R+ +  SGGVDSSV   LL   G+        LY  R   + +      C A +D+
Sbjct: 13  PRDSRIALLASGGVDSSVAMHLLVEAGFRP-----DLYYIRIGMQDEDGGYLDCPAEEDI 67

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                +    ++   V D  + + + V+     +   G TP P V CN+ +KF    +  
Sbjct: 68  ELVTLLARRYDLHLEVIDLHKLYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFG---AFE 124

Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + G+  D +ATGHY   R       +    +    D  +DQ+ FL     +Q+  L FP
Sbjct: 125 ERSGSSYDYIATGHYATIR----KTAEGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFP 180

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNG 250
           +G + KE VR +A E  L  A + DSQ ICF+ Q  Y D ++R        GDI+ H  G
Sbjct: 181 IGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLG--TQTGDIIDHETG 238

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLR 306
           + +G H G   +TIGQR+GLG++ G P +VV  D   + +       P+       I   
Sbjct: 239 EKIGEHRGYWFHTIGQRKGLGLS-GGPWYVVAKDVEHNVLYASRGYDPKTQYGT-IIETE 296

Query: 307 EINWLG--DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASG 362
           E++WL     L+ +   D   +   KIR + D     ++R   G Y       + G+A+G
Sbjct: 297 EMHWLTVDPWLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVSSEPIQGIAAG 356

Query: 363 QACVFY 368
           Q    Y
Sbjct: 357 QFATIY 362


>gi|153855259|ref|ZP_01996425.1| hypothetical protein DORLON_02439 [Dorea longicatena DSM 13814]
 gi|149752258|gb|EDM62189.1| hypothetical protein DORLON_02439 [Dorea longicatena DSM 13814]
          Length = 191

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 9/199 (4%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            P+G+  K+ +R +A E+GL +A K DSQDICFV  G Y   ++  +      G+ V  +
Sbjct: 1   MPVGEYTKDQIRAMADEIGLLVAHKPDSQDICFVSDGDYASYIEENSDAKITPGNFVLSD 60

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G ++G+H GII+YT+GQR+GLG+++G P+FV+ +   ++ V+VG  E      +   ++N
Sbjct: 61  GTVVGKHKGIIHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVVGSNEESMSRYVRADQVN 120

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           ++     ED + +  + + KIR +       V++  +D +   FE+ +  +  GQA V Y
Sbjct: 121 FM---TVED-LTEPKRVWAKIRYNHRGAWCTVEKTGEDEILCTFEEPQRAITPGQAVVLY 176

Query: 369 TSDSNEARVLGGGIISGSK 387
             +     VLGGG I   K
Sbjct: 177 DGE----YVLGGGTIIADK 191


>gi|285921099|gb|ADC39865.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921113|gb|ADC39872.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921115|gb|ADC39873.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921119|gb|ADC39875.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921121|gb|ADC39876.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921123|gb|ADC39877.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921127|gb|ADC39879.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921129|gb|ADC39880.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921131|gb|ADC39881.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921133|gb|ADC39882.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921161|gb|ADC39896.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + + ++V D +E F+N 
Sbjct: 3   LKNAGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHVLDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|298483766|ref|ZP_07001939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|295087550|emb|CBK69073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
 gi|298270060|gb|EFI11648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 355

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 162/360 (45%), Gaps = 26/360 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MEIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATT---LQCDGKT--WLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A   GL  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ +G H 
Sbjct: 170 EVREIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLG--EKEGAIVELETGKKVGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +  ++  VD      KIR + +      +Q  +   ++   +   G+A GQ  V Y  +
Sbjct: 287 PWKGQEKEVD---ITFKIRHTPEFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343


>gi|255593058|ref|XP_002535783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
 gi|223521982|gb|EEF26602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
          Length = 156

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 7/157 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V 
Sbjct: 7   IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD 
Sbjct: 64  DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           +ATGHY +    V  D      M R  D  +DQ+YFL
Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFL 156


>gi|285921173|gb|ADC39902.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + + +++ D +E F+N 
Sbjct: 3   LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF ++Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVNTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|285921101|gb|ADC39866.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921107|gb|ADC39869.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921117|gb|ADC39874.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921165|gb|ADC39898.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921187|gb|ADC39909.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921191|gb|ADC39911.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921197|gb|ADC39914.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921235|gb|ADC39933.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + + +++ D +E F+N 
Sbjct: 3   LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|285921219|gb|ADC39925.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + V +++ D +E F+N 
Sbjct: 3   LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQVPYHILDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|285921077|gb|ADC39854.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921111|gb|ADC39871.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921125|gb|ADC39878.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921135|gb|ADC39883.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921141|gb|ADC39886.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921209|gb|ADC39920.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921211|gb|ADC39921.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + + ++V D +E F+N 
Sbjct: 3   LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHVLDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|260171069|ref|ZP_05757481.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
 gi|315919389|ref|ZP_07915629.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693264|gb|EFS30099.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 355

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 161/362 (44%), Gaps = 26/362 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+
Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHN 257
            VR++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  +  LG H 
Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETEKKLGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D 
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDMEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286

Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +  ++  +D      KIR + D      +Q  +   ++   +   G+A GQ  V Y  +
Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343

Query: 372 SN 373
           + 
Sbjct: 344 AK 345


>gi|228470778|ref|ZP_04055626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas uenonis 60-3]
 gi|228307451|gb|EEK16456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas uenonis 60-3]
          Length = 376

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 169/371 (45%), Gaps = 41/371 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGS---CCAGQDV 73
           P+D R+ +  SGGVDSSV   LL   G+        LY  R   +   GS   C A +D+
Sbjct: 10  PRDSRIALLASGGVDSSVAMHLLVEAGFRP-----DLYYIRIGMQDEDGSFLDCPAEEDI 64

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                +    ++   + D  + + + V+     +   G TP P V CN+ +KF    +  
Sbjct: 65  ELVTLLARRYDLHLEIVDLHQVYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFG---AFE 121

Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + GA  D +ATGHY   R    +DG     +    D  +DQ+ FL     +Q+  L FP
Sbjct: 122 ERCGASYDYIATGHYATIR--QTEDG--LTFLGTSPDPVKDQTDFLAQIGFRQMERLLFP 177

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNG 250
           +G + KE VR +A E  L  A + DSQ ICF+ Q  Y D ++R        GDI+ H  G
Sbjct: 178 IGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQIDYNDFIERYLG--TQTGDIIDHETG 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR------------ESL 298
           + +G H G   +TIGQR+GLG++ G P +VV  D   + V+   R            E+ 
Sbjct: 236 EKIGEHRGYWFHTIGQRKGLGLS-GGPWYVVAKDVEHN-VLYASRGYDPKTQYGTIIETE 293

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV- 357
           E+H  +L    WL      D+ ++      KIR + D     ++    G Y       + 
Sbjct: 294 EMH--WLTTDPWLWTKTPSDSPLE---VTFKIRHTPDFTAGRLEHLPSGGYQLVSSVPIQ 348

Query: 358 GVASGQACVFY 368
           G+A+GQ    Y
Sbjct: 349 GIAAGQFATIY 359


>gi|237801139|ref|ZP_04589600.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023996|gb|EGI04053.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 155

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 8/158 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD
Sbjct: 3   RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++
Sbjct: 60  KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           ATGHY+R R     D   R  + + +D  +DQSYFL A
Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHA 152


>gi|170036350|ref|XP_001846027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
 gi|167878999|gb|EDS42382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
          Length = 358

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 163/333 (48%), Gaps = 24/333 (7%)

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G C   QD  DA+++C  +++     ++ + +   V   F   Y+AG TP P + CNR +
Sbjct: 26  GYCSGEQDWLDAQKLCRQLDIPLEQVNFVKDYWLEVFGSFLKDYSAGITPNPDILCNRHI 85

Query: 125 KFSDLLSVTRQ-LGADVLATGHYIRSRL--YVGDDGKRRRI-MCRPMDLERDQSYFLFAT 180
           KF+      R+ +GAD +ATGHY RS    ++ +  ++ R+ +   +D  +DQ++FL   
Sbjct: 86  KFNLFYKHARERMGADAIATGHYCRSSFGPFLENYTEQDRVRLLTGVDEIKDQTFFLSQI 145

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGI 239
             + L    FP+G M K  V+ LA E+GL+  A K +S  ICFV +  + D +     G 
Sbjct: 146 GTEALRRTMFPIGGMMKREVKALAAEVGLEAFAKKKESMGICFVGKRSFQDFI-----GE 200

Query: 240 ALE----GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVG 293
            +E    G +    G+++G H G+ ++T+GQ+  +G  + +P FV   D  +N   ++ G
Sbjct: 201 YIESKPGGFVDFETGRVVGEHKGLHHWTVGQKAKIGGCL-KPYFVFRKDVERNVIYLVAG 259

Query: 294 PRES-LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                L    ++  +  WL     +D V  G  +C  + + ++  V   V   D   V+V
Sbjct: 260 TDHPLLRTDMVFAEDPVWLNRP--DDWVRGGVLRCQFRFQHTKPLVGCSVIETDGHKVFV 317

Query: 351 DFEKSEVGVASGQACVFYTSDS--NEARVLGGG 381
             ++    +  GQ  VFY ++     AR+   G
Sbjct: 318 KLDEPLRAITPGQYAVFYRNEECFGSARITKPG 350


>gi|285921079|gb|ADC39855.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921081|gb|ADC39856.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921083|gb|ADC39857.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921085|gb|ADC39858.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921087|gb|ADC39859.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921089|gb|ADC39860.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921091|gb|ADC39861.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921093|gb|ADC39862.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921095|gb|ADC39863.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921097|gb|ADC39864.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921103|gb|ADC39867.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921105|gb|ADC39868.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921109|gb|ADC39870.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921137|gb|ADC39884.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921139|gb|ADC39885.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921143|gb|ADC39887.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921145|gb|ADC39888.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921147|gb|ADC39889.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921149|gb|ADC39890.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921151|gb|ADC39891.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921153|gb|ADC39892.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921155|gb|ADC39893.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921157|gb|ADC39894.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921159|gb|ADC39895.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921163|gb|ADC39897.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921167|gb|ADC39899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921171|gb|ADC39901.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921175|gb|ADC39903.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921177|gb|ADC39904.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921179|gb|ADC39905.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921185|gb|ADC39908.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921189|gb|ADC39910.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921195|gb|ADC39913.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921199|gb|ADC39915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921201|gb|ADC39916.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921203|gb|ADC39917.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921205|gb|ADC39918.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921207|gb|ADC39919.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921213|gb|ADC39922.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921215|gb|ADC39923.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921217|gb|ADC39924.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921221|gb|ADC39926.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921223|gb|ADC39927.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921225|gb|ADC39928.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921227|gb|ADC39929.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921229|gb|ADC39930.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921231|gb|ADC39931.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921233|gb|ADC39932.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921237|gb|ADC39934.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921239|gb|ADC39935.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921241|gb|ADC39936.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G++VIG  ++L+      +        +++    +V + + + +++ D +E F+N 
Sbjct: 3   LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|301167154|emb|CBW26733.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteriovorax marinus SJ]
          Length = 411

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 188/381 (49%), Gaps = 27/381 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   ++V M GGV+S+V A LLK+ G +V+G+ +  +   + S +  S    + + + ++
Sbjct: 10  KQQTILVGMDGGVESTVAAYLLKKQGLNVVGLGVVFH---EYSYKSLSVWTPKSLENIKK 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + +  Y  +    F + V+ P  S+  A E   P +  N+ +    L+   + +GA
Sbjct: 67  ICNQLEIPFYGTNINSLFYSRVLEPVVSTRLAAEQFEPVIAWNKIL-IETLIEKAKVVGA 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGH  +++++         ++  P D+  D++Y L   +Q +L  L FPL ++K+ 
Sbjct: 126 TGIATGH--KAKVFKNQKSGVYSLLV-PADVANDETYGLSRLSQDELSKLIFPLAEIKQN 182

Query: 199 SVRDLAREMGL-----DIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIV-HLNGQ 251
            +  +A  +G+     DI +K   +   F  +  + +VV+R +A  +  EG I+ + +G 
Sbjct: 183 EILKIANLLGITFAKDDIENKKRRKKSLF--RTDFIEVVERFSAPTLRKEGRILSYRDGT 240

Query: 252 ILGRHNGIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +  H+G+  Y + Q  G+    G A+ + L V+ ++     VIV   E    H  + R 
Sbjct: 241 TICEHDGVHLYHLNQ-EGIVGKKGFAVDKTLSVIRINPRQQDVIVDNIE--RYHYTHCRL 297

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVAS-GQAC 365
           + +  D   +  +    +CFV+ +SS   +P  +  +N+  V V+FE  + GV   G   
Sbjct: 298 MRFSHDPAMD--LSKPLQCFVQTKSSGAKLPCKLYFKNNRAVVVEFEDEQEGVCPRGGYL 355

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           VFY   +  A V+G G++  S
Sbjct: 356 VFYNRRAIGATVIGSGVVRSS 376


>gi|189462149|ref|ZP_03010934.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
 gi|189431122|gb|EDV00107.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
          Length = 378

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 19/291 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +   +SGGVDS+V   LL   GY  D+  + + +      +  + SC A +D+  A  
Sbjct: 26  MNIAALISGGVDSAVAVHLLCEQGYKPDLFYIKIGM-----DTDNELSCTAEEDIELATA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +   + D ++ + + V+         G TP P V CN+ +KF            
Sbjct: 81  TARRYGLQLEIIDLQKEYWDQVVAYTIEKVRNGFTPNPDVMCNKLIKFG-CFEQKAGYAY 139

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FPLG   K+
Sbjct: 140 DKIATGHYASTCELNG-----KTWLATAKDAIKDQTDFLAQINYLQVSKLLFPLGGYMKK 194

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            +R +A +  L  A + DSQ ICF+ +  Y D ++R       +G I+ L +G+ +G+H 
Sbjct: 195 EIRHIAAQAKLPSAQRKDSQGICFLGKINYNDFIRRFLG--ERQGSIIELESGKEIGKHR 252

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G   +TIGQR+GLG++ G P FVV  DK++   I+      +  + Y  E 
Sbjct: 253 GFWFHTIGQRKGLGLS-GGPWFVV--DKDTENNILYVSHGYDTEQQYSNEF 300


>gi|285921183|gb|ADC39907.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 19/187 (10%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
           LK  G+ VIG  ++L+      +        +++    +V + + + +++ D +E F+N 
Sbjct: 3   LKNLGHKVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54

Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
           V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R           
Sbjct: 55  VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217
             ++   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + +S
Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165

Query: 218 QDICFVQ 224
            +ICFV+
Sbjct: 166 SEICFVE 172


>gi|149239668|ref|XP_001525710.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451203|gb|EDK45459.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 509

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 39/292 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D R+++AMS GVDSS+ AAL      +V G+ +       A+ R+ S C  +D  D + V
Sbjct: 88  DDRIIIAMSSGVDSSLCAALYASKYKNVHGIYM-------ANWRQSSQCTERDWRDVQTV 140

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR----- 134
           C  +++S    + E  +   V  P    YA G TP P V CNR VKF  L  +       
Sbjct: 141 CKQLDISCERINLELEYWQNVFQPMIDGYAKGLTPNPDVGCNRYVKFGRLCEIMEERYGN 200

Query: 135 QLGADVLATGHYIRSRLYVGDD--------------------------GKRRRIMCRPMD 168
           + G   L TGHY R    +  +                                + R + 
Sbjct: 201 EKGKWWLVTGHYARVMKKIVKEPSLAHENVDTSIVKQTPTPTNDTDFKANEEYHLLRGLS 260

Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228
             +DQSY+L   +   L  L  PLG   K   R LA+   L  + K D Q +CFV+   +
Sbjct: 261 TRKDQSYYLSTISPLILPHLLLPLGHQLKSQTRQLAQNYKLHTSQKPDLQGLCFVEPSNH 320

Query: 229 FDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
            +    +   I    G+IV  +G++ G+H G+ + TIGQ+  + +  G+P +
Sbjct: 321 SNFRDFLAEYIEPNPGNIVTTDGKVWGKHKGLWHATIGQKSSVLMPQGDPQY 372


>gi|260206355|ref|ZP_05773846.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis K85]
          Length = 268

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 121/250 (48%), Gaps = 21/250 (8%)

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K  +R 
Sbjct: 25  TGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRA 75

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261
            A   GL +A+K DS DICF+  G     + +RI       G +V  +G +L  H+G+  
Sbjct: 76  EAARRGLAVANKPDSHDICFIPSGNTRAFLGERIG---VRRGVVVDADGVVLASHDGVHG 132

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +   G   
Sbjct: 133 FTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAP 191

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D     V
Sbjct: 192 SGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEV 248

Query: 378 LGGGIISGSK 387
           LG   I+G+ 
Sbjct: 249 LGSATIAGAS 258


>gi|330995326|ref|ZP_08319236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329575821|gb|EGG57345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 352

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 169/363 (46%), Gaps = 31/363 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79
           MR+ V +SGGVDS+V    +   GY        L+  +   + +G SC A +D+  +   
Sbjct: 1   MRIAVLISGGVDSAVAVHRICEMGYKP-----DLFYIKIGMEGEGLSCTAEEDIELSTAT 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA- 138
                +   V D ++++   V+         G TP P V CN+ +KF       +++G  
Sbjct: 56  ARRYGLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFG---CFEQEVGHR 112

Query: 139 -DVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            D +ATGHY  +R R     DGK      R  D  +DQ+ FL      Q+  L FP+GD+
Sbjct: 113 YDKIATGHYATVRER-----DGKIWLGTAR--DPVKDQTDFLAQIDSLQVAKLMFPVGDL 165

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
            KE VR +A    L  A + DSQ ICF+ Q  Y D V+R       EG +V +  G+ +G
Sbjct: 166 MKEEVRRIAETQRLPSAKRRDSQGICFLGQIDYNDFVRRFLG--EREGAVVEIETGRRIG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEV-HRIYLREINWL 311
            H G   +TIGQR+GLG+  G P FVV  D  +N   V  G    L+  H   L++ +++
Sbjct: 224 THKGYWFHTIGQRKGLGLG-GGPWFVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFI 282

Query: 312 GDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
               + DA  VD      K R     +   + R   G  ++  +   G+A GQ  V Y +
Sbjct: 283 TGNPWGDAPEVD---VTFKTRHQPHFMKGRLYRAGHGYRLESPERIQGIAPGQFGVVYDA 339

Query: 371 DSN 373
            + 
Sbjct: 340 AAE 342


>gi|153842966|ref|ZP_01993539.1| 3-oxoacyl-[acyl-carrier-protein] synthase 1 [Vibrio
           parahaemolyticus AQ3810]
 gi|149745344|gb|EDM56595.1| 3-oxoacyl-[acyl-carrier-protein] synthase 1 [Vibrio
           parahaemolyticus AQ3810]
          Length = 331

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 6/158 (3%)

Query: 116 PCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
           P + CN+ +KF   L    + L AD +A GHY+R      ++G++ + M R +D  +DQS
Sbjct: 2   PDILCNKEIKFKAFLEFADEVLEADYIAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQS 58

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           YFL+  + +Q+    FP+GD++K  VR +A E GL  A K DS  ICF+ + K+ + + R
Sbjct: 59  YFLYTLSHEQVARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGR 118

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV 272
                A  G+I    G+++G+H G++ +T+GQR+GL +
Sbjct: 119 YLP--AQPGNIETPEGEVIGQHQGLMYHTLGQRKGLHI 154


>gi|289575733|ref|ZP_06455960.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis K85]
 gi|289540164|gb|EFD44742.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis K85]
          Length = 367

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 121/249 (48%), Gaps = 21/249 (8%)

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R        G R R   R +D ++DQSY L   T QQL    FP+GD  K  +R 
Sbjct: 124 TGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRA 174

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261
            A   GL +A+K DS DICF+  G     + +RI       G +V  +G +L  H+G+  
Sbjct: 175 EAARRGLAVANKPDSHDICFIPSGNTRAFLGERIG---VRRGVVVDADGVVLASHDGVHG 231

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +   G   
Sbjct: 232 FTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAP 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              VD   C V++R+  + V    +   D ++V       GVA GQ  V Y  D     V
Sbjct: 291 SGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEV 347

Query: 378 LGGGIISGS 386
           LG   I+G+
Sbjct: 348 LGSATIAGA 356


>gi|224026934|ref|ZP_03645300.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
           18228]
 gi|224020170|gb|EEF78168.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
           18228]
          Length = 385

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 168/371 (45%), Gaps = 28/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +   +SGGVDS+V   LL   GY  D+  + + +      S     C A +D+  A  
Sbjct: 30  MNLAALISGGVDSAVAVHLLCEQGYKPDLFYIRIGMDTDDGLS-----CTAEEDIELATA 84

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +   V D ++ + + V+         G TP P V CN+ +KF            
Sbjct: 85  TARKYGLKLEVVDLQQEYWDRVVAYTIDKVRQGFTPNPDVMCNKLIKFG-CFEEKAGHAY 143

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FPLG + K+
Sbjct: 144 DRIATGHYASTCEREG-----KVWLATAKDPVKDQTDFLAQIDYLQVSRLLFPLGGLMKQ 198

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR+ A    L  A + DSQ ICF+ +  Y D ++R        G IV L +G+ +G H 
Sbjct: 199 EVRETALAARLPSARRKDSQGICFLGKINYNDFIRRFLG--ERPGAIVELESGREIGTHK 256

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH----RIYLREINWLGD 313
           G   +TIGQR+GLG++ G P FVV  D   + + V  R    VH    +  L + +++ +
Sbjct: 257 GFWFHTIGQRKGLGLS-GGPWFVVDKDPEKNLLFVS-RGYDTVHQYGRKFRLTDFHFITE 314

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             + +A      CF KIR +   +P  ++    G  V+      G+A GQ  V Y     
Sbjct: 315 NPWPEAGEQEI-CF-KIRHTDQFLPGVIRPAGTGYEVESPHLIQGIAPGQFGVIY---DR 369

Query: 374 EARV-LGGGII 383
           EAR+ +G G I
Sbjct: 370 EARLCIGSGEI 380


>gi|149183669|ref|ZP_01862083.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus sp. SG-1]
 gi|148848617|gb|EDL62853.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus sp. SG-1]
          Length = 216

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 110/207 (53%), Gaps = 15/207 (7%)

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q QL  + FP+G + K+ VR++A+E GL  A K DS  ICF+ +  + D +   N   A 
Sbjct: 6   QDQLEKVMFPIGSIDKKKVREIAKEAGLATATKKDSTGICFIGERNFKDFLS--NYLPAQ 63

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRES 297
            G++  L+G++ G H+G++ YTIGQR+GLG+   GEP FV+   LD+N   V  G   E+
Sbjct: 64  PGNMETLSGEVKGNHDGLMYYTIGQRQGLGIGGAGEPWFVIGKDLDRNVLFVEQGFDHEA 123

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L    I   +I+W  D          F+C  K R  Q+   V VQ  DD  V V F++  
Sbjct: 124 LYSDSILATDISWTSD----KEKTTEFECTAKFRYRQEDHEVKVQLLDDNTVKVIFKEPV 179

Query: 357 VGVASGQACVFYTSDSNEARVLGGGII 383
             V  GQA VFY  D      LGGG I
Sbjct: 180 RAVTPGQAVVFYNGD----ECLGGGTI 202


>gi|299470175|emb|CBN78203.1| tRNA-methyltransferase [Ectocarpus siliculosus]
          Length = 478

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 143/329 (43%), Gaps = 52/329 (15%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDSSV   LL   GY +    L+++   + +     C   +D+  A  VC+   V 
Sbjct: 3   LSGGVDSSVAMRLLLDQGYKIRAFYLKIWLEDELAHLN-ECPWEEDLAYATAVCEQAGVP 61

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
             V   +  + + V+         G TP P V CN  +KF        +    V ATGHY
Sbjct: 62  LEVVPLQREYWDQVVSYTVREAREGRTPNPDVMCNSRIKFGMFYDHVGKHFRHV-ATGHY 120

Query: 147 IR--------------------------------SRLYVGDDGKRRRIMCRPMDLERDQS 174
            R                                 R+  G D  R R++  P D  +DQ+
Sbjct: 121 ARLEHSGGSDDANATPSDRSAAAAAAAAGTEEPPVRVAAGSDRGRVRLLLSP-DAVKDQT 179

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           YFL A TQ QL    FPLG   K+ +R+LA    L    + DSQ ICF+ + K FD   +
Sbjct: 180 YFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQGICFLGKLK-FDEFLQ 238

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLG-------VAMGEPLFVVYLDKNS 287
              G +  G IV   G+ +G H G+  +TIGQR+G+G       V +G P +V   DK+ 
Sbjct: 239 HYLGTS-PGAIVDQTGRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLG-PWYVA--DKDM 294

Query: 288 SR---VIVGPRESLEVHRIYLR--EINWL 311
            R   V+   RE++   R   R   + W+
Sbjct: 295 ERNVLVVTNDREAIASPREVFRVEALQWI 323


>gi|164663299|ref|XP_001732771.1| hypothetical protein MGL_0546 [Malassezia globosa CBS 7966]
 gi|159106674|gb|EDP45557.1| hypothetical protein MGL_0546 [Malassezia globosa CBS 7966]
          Length = 346

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 158/330 (47%), Gaps = 26/330 (7%)

Query: 67  CCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           C   ++ +D + VC  +  +   + D    +   V  P    ++ G TP P V+CN+ +K
Sbjct: 23  CDWQREWHDVQAVCRHLGGMQVEMIDLSRDYWVHVFEPALGQWSDGTTPNPDVECNKFIK 82

Query: 126 FSDLLS--VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           F  L+   V + L  A  LATGHY R    + +      ++ R  D  +DQS+FL + + 
Sbjct: 83  FGALMDRVVPKSLIPATWLATGHYARIAPRI-EHTHIYPVVRRAADPTKDQSFFLSSVSS 141

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKR-INAGIA 240
            +L    FPLGDM K  VR LAR + L   +KS+S  +CFV ++G       R ++  +A
Sbjct: 142 SRLDRSLFPLGDMHKSDVRSLARSLALPTCEKSESMGLCFVGERGSGAHAFARFLDQYVA 201

Query: 241 LE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP--LFVVYLDKNSSRVIVGPRES 297
            E G  V   GQ LG H G+   TIGQR  +    G+P   +V   D  + ++IV P +S
Sbjct: 202 NEAGAFVTPEGQYLGMHRGLHTLTIGQRARIS---GKPQRYYVARKDPVTRQIIVVPSKS 258

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFE 353
              L+   +     +W+      D      +   ++R  Q+ VP FV+ +  DGV+V+F 
Sbjct: 259 HPMLQCTSLQSTVFSWVTGVPVLDT-----QLLAQVRYRQNAVPCFVRAHGLDGVHVEFT 313

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGII 383
            S   V+ GQ  V Y  +      LG G I
Sbjct: 314 TSVEAVSPGQTVVLYDGE----LCLGSGTI 339


>gi|153807884|ref|ZP_01960552.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185]
 gi|149129493|gb|EDM20707.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185]
          Length = 354

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 125/275 (45%), Gaps = 17/275 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY     TL              C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF       +++G D 
Sbjct: 58  RKYGLSLEVVDLHREYWDNVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQRIGKDF 114

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K 
Sbjct: 115 DYTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKH 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H 
Sbjct: 170 EVREIALNADLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGMIIELETGKKLGTHR 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
           G   +TIGQR+GLG++ G P FV+  D   + + V
Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDIQENIIYV 261


>gi|296415367|ref|XP_002837361.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633226|emb|CAZ81552.1| unnamed protein product [Tuber melanosporum]
          Length = 512

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 197/477 (41%), Gaps = 118/477 (24%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNS---------------- 57
           +P D ++ +AMS GVDSSV AALL R G+   +++   +  ++                 
Sbjct: 52  SPHD-KIFIAMSSGVDSSVAAALLLRSGHPRENLLPFYMANWSPSANPDPIPPPPSLPGR 110

Query: 58  ---RKASKRKGSC-----CAGQDVYDARRVCDTINVSHYV-FDYEERFRNAVIVPFASSY 108
               +AS R  S      C  ++  D + VC  +++   +  ++E+ +   V VP    Y
Sbjct: 111 ARRNRASTRPQSNEGSLKCTEREFNDVKDVCRALDLPEPICMNFEKEYWCEVFVPMLEMY 170

Query: 109 AAGETPLPCVDCNRTVKFSDLLS------------VTRQLGADVLATGHYIRSRLYVGDD 156
             G+TP P V+CNR +KF  ++             VT +     LATGHY     ++   
Sbjct: 171 RCGKTPNPDVECNRHIKFGAVIKRLRDEFRRRWEGVTEKGSKWWLATGHYAHILYHIPTK 230

Query: 157 GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVRDLAREMGLD---- 210
                 + R +D+ +DQ+++L    +  L  L FPLG   + K  V+ LARE+ L     
Sbjct: 231 SYH---LLRSIDINKDQTFYLSTLHRDVLSRLLFPLGSYGLSKPGVKSLARELLLPGWRP 287

Query: 211 -IADKSDSQDICFVQQ--GKYFDVVKRINAGI--ALEGDIV-----------------HL 248
              ++ +S  +CFV+   GK     +R  +G      GD+V                   
Sbjct: 288 GQTERPESMGLCFVEPAGGKGKTGFRRFLSGYLEPEPGDVVIGPSKKYPGGGESEGACAP 347

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYLDKNSSRVIVGPRESLEV------ 300
            G ++G+H G+ + TIG+R    +    P +    Y+ + +  +      +LE+      
Sbjct: 348 EGSVVGKHAGLWHATIGERARFQLPQASPEYRGKWYVSRKNREL-----NTLEIVRGQDN 402

Query: 301 HRIY-----LREINWLGDG----LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---- 347
            R+Y     + +  WLGD     + E +  +G     + R  Q P+ V       G    
Sbjct: 403 ARLYGKGMVVEKWRWLGDDAADIVRERSASNGRGLVTQFRHRQIPLKVSSVEQPGGPGYR 462

Query: 348 -----------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
                      + + F+   + +A GQ+   +  D    R LGGG+I      DA+E
Sbjct: 463 PCSEGNEPAPALKIIFDSPAMAIAPGQSAALWFRD----RCLGGGVI-----RDAIE 510


>gi|332022487|gb|EGI62794.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Acromyrmex
           echinatior]
          Length = 239

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DAR +CD + +S    ++ + + N V       Y  G TP P + CN+ +KF    
Sbjct: 4   KDYDDARWICDKLEISLIQINFVKEYWNEVFSDLLEKYQNGYTPNPDILCNKNIKFDKFF 63

Query: 131 SVTR-QLGADVLATGHYIRSRL------YVGDDGKRRRIMCRPM---DLERDQSYFLFAT 180
            + R +  AD +ATGHY ++        Y  +  K   +  R +   D  +DQ++FL   
Sbjct: 64  HLARDKFQADAIATGHYAKTSFGPYLENYEANTSKYPILNVRLLQAQDSNKDQTFFLGQI 123

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            QQ L    FPLG+  K  V+ +A + GL  IA K +S  ICFV + ++ D +    A  
Sbjct: 124 PQQTLRRCMFPLGNYLKNHVKVMAMQAGLCQIARKKESTGICFVGKREFQDFISEYIADK 183

Query: 240 ALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
              G+ + L+ G  +G+HNGI   TIGQR  +   + +P +V   D+ S+ + V
Sbjct: 184 P--GNYIDLDSGLQIGKHNGIHKRTIGQRCKIAGCL-KPYYVFNKDQKSNTITV 234


>gi|326911266|ref|XP_003201982.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Meleagris gallopavo]
          Length = 346

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 136/312 (43%), Gaps = 41/312 (13%)

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRL-----YVGDDGKR 159
             Y  G TP P + CN+ +KF+  L      LGAD +ATGHY R+ L     +     KR
Sbjct: 10  KEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADAIATGHYARTSLEDEEVFQQKHMKR 69

Query: 160 RRIMCRP-------------MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R + R               DL +DQ++FL   +Q  L    FPLGD+ K  VR +A E
Sbjct: 70  PRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVRKIASE 129

Query: 207 MGLDIADKS---------DSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256
            GL    K           S  ICF+ +  +   +  +       G+ V + + +++G H
Sbjct: 130 HGLHHVLKKKEACSTFLFQSMGICFIGERNFEKFL--LEYLEPQPGNFVSIEDKKVMGTH 187

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD 313
            G   YTIGQR  L     +  FVV  D ++  + V P  +   ++R  LR   ++W+ +
Sbjct: 188 KGWFLYTIGQRARLA-GQQDAWFVVDKDVSTGDIFVAPSTDHPALYRDLLRTNRVHWIAE 246

Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               + V D   +C  + R     VP  +  N DG V+V   K    +  GQ  VFY  D
Sbjct: 247 EPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARALTPGQFAVFYKGD 306

Query: 372 SNEARVLGGGII 383
                 LG G I
Sbjct: 307 E----CLGSGKI 314


>gi|303325418|ref|ZP_07355861.1| tRNA methyl transferase [Desulfovibrio sp. 3_1_syn3]
 gi|302863334|gb|EFL86265.1| tRNA methyl transferase [Desulfovibrio sp. 3_1_syn3]
          Length = 372

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 108/207 (52%), Gaps = 7/207 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGGVDS     LL+R G+DV+ +    +   ++  R G  C      +A   C
Sbjct: 1   MRIAVAVSGGVDSLCALLLLRRAGHDVLALH-GFFLPEQSHPRPGGACDPLPGLEA--AC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  +  D    F+  V++PFA SYA G TP PC  CNR VKF  LL     LGAD 
Sbjct: 58  RALDIPLHTVDLRAVFQREVMIPFARSYAEGRTPNPCARCNRAVKFGALLDAALALGADK 117

Query: 141 LATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           LATGHY  +RL  G +G++    ++    D  +DQSYFL      +L    FPL D  K 
Sbjct: 118 LATGHY--ARLLPGRNGEKDAPPVLAAAHDRAKDQSYFLSLVPAARLRHAFFPLADQDKA 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQ 225
               L    GL +    +SQDICFV +
Sbjct: 176 RSVALVAAAGLAVPLPRESQDICFVPE 202


>gi|31747827|gb|AAO38412.1| Lfe204p1 [Leptospirillum ferrooxidans]
          Length = 238

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 18/197 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-----------CCAG 70
           RV+V MSGGVDS+V A ++K+ GYDV G  +++++S  +S+   S           CC  
Sbjct: 4   RVLVGMSGGVDSAVSALIMKQSGYDVTGAIIEIWDSEDSSECHPSSENARPWSERGCC-- 61

Query: 71  QDVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             V   R +C+ +  +   + D  + FR  V+ PF   Y    TP PCV CN  VK  +L
Sbjct: 62  -HVPMVRYLCEEVLEIPFVMVDRRDDFRKKVMDPFRDEYLKALTPNPCVTCNARVKIHEL 120

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +++   LG +++ATGHY R ++Y    G+    + +  D       F  +   +++  L 
Sbjct: 121 IALADSLGIEMVATGHYAR-KVYSPVTGQYH--VAKGRDPGEGPVLFFGSLKSEEIARLV 177

Query: 190 FPLGDMKKESVRDLARE 206
           +PL D+ KE VR LAR+
Sbjct: 178 WPLSDLTKEEVRKLARD 194


>gi|258648071|ref|ZP_05735540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella tannerae ATCC 51259]
 gi|260851930|gb|EEX71799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella tannerae ATCC 51259]
          Length = 364

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 162/372 (43%), Gaps = 27/372 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+    +SGGVDS+V   LLK  G     +T  L+  +  +  +G   C A +D   A  
Sbjct: 4   MKTAALISGGVDSAVAVHLLKEQG-----ITPDLFYIKIGNGPQGEWDCKAEEDWEMATA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         + D ++ + + V+         G TP   V CN+ +KF            
Sbjct: 59  VARRYGCKLKLIDLQKEYWDEVVGYIVDRLRKGLTPNSDVMCNKYIKFG-CFEEREGHNY 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++     D+  R  +   P D  +DQ+ FL       +  L FP+G + K+
Sbjct: 118 DRIATGHYAQTET---DEAGRVWLTTAP-DPIKDQTDFLAQLDGFSVRKLIFPIGGLMKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
            VR +A+   L  A + DSQ ICF+ +  + ++ ++      G+ +E +     G I+G+
Sbjct: 174 EVRKIAQAAHLAPAKRKDSQGICFLGKISFSELARKYLGEKEGLVVEQE----TGNIIGK 229

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR--EINWLGD 313
           H G   YTIGQR+GLG   G P +VV   K+  R I+      E    Y +   I     
Sbjct: 230 HKGYWFYTIGQRKGLGFG-GGPWYVV--RKDIKRNIIYVSRGFETKAAYGKAFRIEMPHF 286

Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
             +     DG ++   K+R + +  P  +        +  ++   G+A GQ  V Y  D 
Sbjct: 287 ITYNPYEADGDYRVTFKVRHTPEFTPGRLLVRGGKYELHSDELIQGIAPGQFAVLY--DE 344

Query: 373 NEARVLGGGIIS 384
              R LG G I 
Sbjct: 345 QAHRCLGSGEIG 356


>gi|88803301|ref|ZP_01118827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
 gi|88780867|gb|EAR12046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
          Length = 173

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A LLK+ GY+VIG+ ++ ++    +     C   +D  DA  V +
Sbjct: 3   RVIVGLSGGVDSSVTAYLLKKQGYEVIGLFMKNWHDDSVT-ISNDCPWLEDSNDAMLVAE 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V D  + ++  ++    S Y  G TP P V CNR +KF   + +  +LGAD +
Sbjct: 62  KLGIPFQVVDLSKDYKERIVDYMFSEYRKGRTPNPDVLCNREIKFDVFMDIALKLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           ATGHY R    V +     +++    D+ +DQSYFL   +Q QL
Sbjct: 122 ATGHYCRKEEEVIEGASVYKLLAGK-DVNKDQSYFLCQLSQDQL 164


>gi|225022757|ref|ZP_03711949.1| hypothetical protein CORMATOL_02802 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944478|gb|EEG25687.1| hypothetical protein CORMATOL_02802 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 200

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 104/205 (50%), Gaps = 17/205 (8%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL 248
           FP+GD  K  +R+ A  MG  +A K DS DICF+  G   +    + A I L  G IV  
Sbjct: 2   FPVGDTIKPKIREEAAAMGFSVAKKPDSYDICFIPDG---NTQAFLGARIGLRPGMIVDT 58

Query: 249 NGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G  L  H+G  NYTIGQR+GL +    A G+P +V  ++  +  V VG R  L V  I 
Sbjct: 59  EGNKLREHDGAWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIE 118

Query: 305 LREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVAS 361
              + +L        ++DG F   V++R+    VP  V V R  D + ++ +K+  GVA 
Sbjct: 119 ADRLKYL------HPMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVAR 172

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQA V Y  D     VLG G I G+
Sbjct: 173 GQAAVLYLPDPGGDIVLGSGTICGT 197


>gi|294463455|gb|ADE77257.1| unknown [Picea sitchensis]
          Length = 323

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 36/268 (13%)

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A+GHY   +    +   +  ++    D  +DQ+YFL   +Q+QL  L FPLG M KE
Sbjct: 4   DYVASGHYAHVKHLSVECETKCSVLHLSADEVKDQTYFLSHLSQEQLRKLLFPLGCMSKE 63

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255
            VR+LA EMGL   D+ DSQ +CF+ + K+ + V R      GI LE +     G  LG+
Sbjct: 64  EVRNLAAEMGLLNKDRKDSQGLCFLGKVKFSEFVARHIGEMEGILLEAE----TGDFLGK 119

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLREINWLG 312
           H G   YTIGQR+GL ++ G P +VV  D  ++ V V     SL+  R   ++  + W+ 
Sbjct: 120 HRGFWFYTIGQRQGLRLS-GGPWYVVAKDVENNVVFVSRNYFSLDKKRCLFHVSSLKWIL 178

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--------------- 357
               +D  +D  +C  K+R         ++     +Y + E   +               
Sbjct: 179 GSPPKD--LDKLQC--KVRHGPKFYNCHMELVKGNLYKENEHQSLGETAQEIAIVRLSED 234

Query: 358 --GVASGQACVFYTSDSNEARVLGGGII 383
             G+A+GQ   FY  ++     LG GII
Sbjct: 235 DQGLAAGQYVAFYKGNT----CLGSGII 258


>gi|320534232|ref|ZP_08034748.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133564|gb|EFW25996.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 245

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 10/221 (4%)

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDI 220
            + R  D  +DQSY L  + +  L    FPLGD   K  VR  A   GL +A K DS DI
Sbjct: 18  TLRRAADAAKDQSYVLAVSGRDGLSRALFPLGDAPSKADVRAEAERRGLPVASKPDSYDI 77

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GE 276
           CFV  G     + R + G+  EG +V  +G +LG H+G   +T+GQR+GLG+      G 
Sbjct: 78  CFVADGDTRGFLTR-SLGVH-EGTLVSPDGDVLGTHDGYFGFTVGQRKGLGLTRPAPDGR 135

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL-FEDAVVDGFKCFVKIRSSQD 335
           P +V+    +++ V+VGP E L    +    +  L D L   D  +      +++R+   
Sbjct: 136 PRYVIETRPSTNEVVVGPEELLSRKSVDGNNLILLADPLPLNDGDLGWQDVTIQVRAHGR 195

Query: 336 PVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           P+P  V V      +         G+A+GQ+ V Y  DS +
Sbjct: 196 PLPADVAVDVETGTLRAKLHHPLRGLAAGQSVVVYGGDSGD 236


>gi|315123662|ref|YP_004065666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315017384|gb|ADT65477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 199

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 17/206 (8%)

Query: 182 QQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           ++ L  L FPLG+MKKE V+  A   E+    A + +S +ICFV+   Y  V+ +     
Sbjct: 6   KEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDT 63

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
            + G+++  +G+++G+H G ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L
Sbjct: 64  KIPGEVLDSSGKVVGKHEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEEL 123

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357
           ++    L+ IN     LF DA      C VKIR      P  V+   D    +  +    
Sbjct: 124 KISEFNLKNIN-----LFIDA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVY 176

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G+ASGQ  VFY  D    +V+  G I
Sbjct: 177 GLASGQMAVFYDHD----KVIASGFI 198


>gi|7022010|dbj|BAA91462.1| unnamed protein product [Homo sapiens]
          Length = 166

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRL 151
           +ATGHY R+ L
Sbjct: 123 IATGHYARTSL 133


>gi|238590061|ref|XP_002392203.1| hypothetical protein MPER_08255 [Moniliophthora perniciosa FA553]
 gi|215457930|gb|EEB93133.1| hypothetical protein MPER_08255 [Moniliophthora perniciosa FA553]
          Length = 173

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+AMSGGVDSSVVA LL    +D+  V ++ ++ R  S     C   +D  D RR+C  +
Sbjct: 1   VIAMSGGVDSSVVAKLLSERDHDLSAVFMRNWDLRDESGTDEGCQWERDWNDVRRLCKAL 60

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   + D  + +   +  P    + +G+TP P V CNR +KF  LL          LAT
Sbjct: 61  DIPCKMVDLSKEYWTRIFEPSLEIWQSGQTPNPDVWCNREIKFGALLDRLSLDEGTWLAT 120

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GHY R     G + + + +  +  D  +DQ+++L +  +  L    FPLG +
Sbjct: 121 GHYARKAWQEGSNPRPKLLSAK--DRIKDQAFYLASINETGLSRALFPLGHL 170


>gi|325119377|emb|CBZ54930.1| putative tRNA methyltransferase domain-containing protein [Neospora
           caninum Liverpool]
          Length = 1109

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 133/314 (42%), Gaps = 63/314 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---------------NSRKASK 62
           P    + V +SGGVDSSV   LL++ G+      ++++                   A  
Sbjct: 346 PLSEEIAVLLSGGVDSSVSLRLLQQRGFSPRAFFIKIWLPEYLLVSRHLPREDTGESALP 405

Query: 63  RKGSCCAGQ-DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             G  C  + D+  A +VC    V   V   +E +   V+         G TP P   CN
Sbjct: 406 EAGRACGWRADLTFAEQVCRQARVPLEVLPLQEAYWEGVVKQLLDEARQGLTPNPDWWCN 465

Query: 122 RTVKFS---DLL-------SVTRQLG--------------------ADVLATGHYIR--- 148
           + VKF    DLL       +++R  G                       +A+GHY R   
Sbjct: 466 QRVKFGAFLDLLDGRENRRNLSRHNGDKASEAKNAERPSSAWSSCWTGAVASGHYARVVH 525

Query: 149 ------SRLYVGDD-----GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                 S    G +     G RR  + R  D  +DQSYFL   +Q+QL  L  P+GDM+K
Sbjct: 526 DAEAARSGQREGHEREDERGDRRTRLLRGKDRRKDQSYFLSGLSQRQLRRLLTPVGDMEK 585

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGRH 256
             VR LA  + L  A + DSQ +CF+  GK    +   +   +  G ++H    + LG H
Sbjct: 586 VEVRRLAAGLALPTASRRDSQGLCFL--GKLPLSLFFQHFLGSSPGPVLHFPSCLALGTH 643

Query: 257 NGIINYTIGQRRGL 270
            G+ N+T+GQR+G+
Sbjct: 644 GGLWNFTVGQRKGV 657


>gi|213850106|ref|ZP_03381004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 209

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 19/212 (8%)

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
            +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A 
Sbjct: 1   HEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQ 58

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPR 295
            G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D +N+  ++    
Sbjct: 59  PGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH 118

Query: 296 ESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDF 352
           E   +  + L  ++++W+    F        +C VK R  Q  +P  +   +DD + V F
Sbjct: 119 EHPRLMSVGLIAQQLHWVDREPFTGT----LRCTVKTRYRQTDIPCTINALDDDRIEVIF 174

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           ++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 175 DEPVAAVTPGQSAVFYSGEV----CLGGGIIE 202


>gi|149065692|gb|EDM15565.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 166

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 4/131 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122

Query: 141 LATGHYIRSRL 151
           +ATGHY R+ L
Sbjct: 123 VATGHYARTSL 133


>gi|320534234|ref|ZP_08034749.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133539|gb|EFW25972.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 131

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/130 (45%), Positives = 75/130 (57%), Gaps = 3/130 (2%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ A+SGGVDS+V AA     G++V+GV + L  +R  + R GS  CC+ +D  DAR 
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRTQT-RSGSRGCCSIEDSADARW 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +  YV+D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG 
Sbjct: 60  AAQILGIPFYVWDLSEEFEERVVADFLDEYRAGRTPNPCVRCNERVKFDALLERALALGF 119

Query: 139 DVLATGHYIR 148
           D +ATGHY R
Sbjct: 120 DAVATGHYAR 129


>gi|289670489|ref|ZP_06491564.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 238

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 19/228 (8%)

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           D  +DQSYFL    Q QL    FP+GD++K ++R  A++ GL    K DS  ICF+ +  
Sbjct: 2   DRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLRRTAQDAGLPTHAKKDSTGICFIGERD 61

Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVY 282
           + + + R     A  G+I    GQ +  H G+  +T+GQR GL +         P +VV 
Sbjct: 62  FREFLGRYLP--ARTGEIRDPRGQRIAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVVG 119

Query: 283 LDKNSSRVIVGP-RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            D  S+ + V   R+S  +   +L+  + +W+            F C  + R  Q   P 
Sbjct: 120 KDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTGA----PPARRFSCTAQTRYRQPDEPC 175

Query: 340 FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V   DDG V V FE+ +  V  GQ+ V Y  D  E   LGG +I+ +
Sbjct: 176 TVDVQDDGSVKVHFERPQRAVTPGQSLVLY--DGEE--CLGGAVIAAT 219


>gi|294645486|ref|ZP_06723187.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
 gi|292639187|gb|EFF57504.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
          Length = 216

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 26/209 (12%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDI 245
           FPLGD  K  VR+   E G +   K  +S ++CF++ G Y D ++     +  E   G  
Sbjct: 11  FPLGDYTKVKVREYLAEKGYEAKSKEGESMEVCFIK-GDYRDFLREQCPELDSEIGSGWF 69

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V+  G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +  
Sbjct: 70  VNSEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLA 129

Query: 306 REINWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358
                      +D +VD  + F      V+IR    P+P  V+R +DG + V F ++   
Sbjct: 130 E----------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASA 179

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSK 387
           +A GQ+ VFY       RVLGG  I+  +
Sbjct: 180 IAPGQSAVFYDG----RRVLGGAFIASQR 204


>gi|219123581|ref|XP_002182101.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406702|gb|EEC46641.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 394

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 163/383 (42%), Gaps = 39/383 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQL-----YNSRKASKRK-GSCCAG 70
           RVV+A+SGGVDS+V AALL+      +  D+    LQ      +NS         SC + 
Sbjct: 1   RVVLALSGGVDSAVAAALLQETYGSSNNSDIGSAVLQTVHMSNWNSNTQDDDSIASCTSE 60

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           QD  DA  V + + ++     +E  + N V  P+ +    G    P + CN  VKF  L 
Sbjct: 61  QDWKDATAVAEHLRLNLTRQHFEREYWNQVFEPYVNDILRGTMGNPDIGCNVHVKFGALR 120

Query: 131 SVT---RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                  + G D   + HY               ++    D  +DQSYFL A    QL +
Sbjct: 121 EFADWVLRWGWDQPPSPHYSHHNHQYQTPPP---LLLAAADPSKDQSYFLSACAGYQLSN 177

Query: 188 LRFPLGD-MKKE--------SVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRIN 236
           + FPLG+  KKE        +VR LA++  L  A+K +S  ICFV  +Q  + D +    
Sbjct: 178 VLFPLGEYYKKENPSNDGKPTVRQLAKDYNLPNANKRESMGICFVGKRQSGFGDFLHEYL 237

Query: 237 AGIALEGDIVHLN-GQIL----GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
                    V ++ G +L     ++   + YTIGQ   +  A  E  FVV  D   +RV+
Sbjct: 238 PHPLRPLQFVDVDTGAVLPAPTPKNAHAVLYTIGQGAKISGA-SEKYFVVDSDVAQNRVL 296

Query: 292 V---GPRESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG 347
           V       +L    + L  + W    +       G  +   +IR  Q  +   ++   DG
Sbjct: 297 VCAGTHHPALYADSLVLETVYWTAGEMPGPLQKRGRLRLQCRIRHLQPLIDCELRVELDG 356

Query: 348 -VYVDFEKSEVGVASGQACVFYT 369
            + V F+K+  G+  GQ   FY 
Sbjct: 357 SLTVYFDKAVRGITPGQTAAFYA 379


>gi|119593829|gb|EAW73423.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_b [Homo sapiens]
          Length = 307

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 46/279 (16%)

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLF 178
           GAD +ATGHY R+ L   +  +++ +                  + +  D  +DQ++FL 
Sbjct: 5   GADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLS 64

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV----- 232
             +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +     
Sbjct: 65  QVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ 124

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
            R    I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V V
Sbjct: 125 PRPGHFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFV 177

Query: 293 GPR-ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
            PR +   ++R  LR   ++W+ +     L  D +++   C  + R     VP  +  N 
Sbjct: 178 APRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQ 234

Query: 346 DG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           DG V+V   ++   +A+GQ  VFY  D      LG G I
Sbjct: 235 DGTVWVTAVQAVRALATGQFAVFYKGDE----CLGSGKI 269


>gi|289670488|ref|ZP_06491563.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 130

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 4   RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 60  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 119

Query: 142 ATGHYIR 148
           ATGHY +
Sbjct: 120 ATGHYAQ 126


>gi|221507042|gb|EEE32646.1| tRNA methyl transferase, putative [Toxoplasma gondii VEG]
          Length = 1596

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 136/325 (41%), Gaps = 78/325 (24%)

Query: 22   RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTL-----------QLYNSRKASKRKGS 66
            +V V +SGGVDSSV   LL++ G+      I V L           +L +S  A    G 
Sbjct: 830  QVAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGG 889

Query: 67   CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            C   +D+  A +VC    V   V   +E +   V+         G TP P   CN+ VKF
Sbjct: 890  CGWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKF 949

Query: 127  S---DLL-------SVTRQLG----------ADV------------LATGHYIR------ 148
                DLL       S  R  G          AD+            +A+GHY R      
Sbjct: 950  GAFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVPAAE 1009

Query: 149  -SRLYV---------------------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             SR                        G + +RR  + R  D  +DQSYFL   +Q+QL 
Sbjct: 1010 TSRRSEEGEDTEDRDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLR 1069

Query: 187  DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             L  P+GDM+K  VR LA  + L  A + DSQ +CF+         +      +  G ++
Sbjct: 1070 RLVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLG--SSTGPVL 1127

Query: 247  HLNGQI-LGRHNGIINYTIGQRRGL 270
            H    + LG H+G+ N+T+GQR+G+
Sbjct: 1128 HFPSCLALGSHDGLWNFTVGQRKGV 1152


>gi|237829765|ref|XP_002364180.1| tRNA methyltransferase domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211961844|gb|EEA97039.1| tRNA methyltransferase domain-containing protein [Toxoplasma gondii
            ME49]
          Length = 1598

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 136/325 (41%), Gaps = 78/325 (24%)

Query: 22   RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTL-----------QLYNSRKASKRKGS 66
            +V V +SGGVDSSV   LL++ G+      I V L           +L +S  A    G 
Sbjct: 832  QVAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGG 891

Query: 67   CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            C   +D+  A +VC    V   V   +E +   V+         G TP P   CN+ VKF
Sbjct: 892  CGWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKF 951

Query: 127  S---DLL-------SVTRQLG----------ADV------------LATGHYIR------ 148
                DLL       S  R  G          AD+            +A+GHY R      
Sbjct: 952  GAFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVPAAE 1011

Query: 149  -SRLYV---------------------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             SR                        G + +RR  + R  D  +DQSYFL   +Q+QL 
Sbjct: 1012 TSRRSEEGEDTEDRDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLR 1071

Query: 187  DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             L  P+GDM+K  VR LA  + L  A + DSQ +CF+         +      +  G ++
Sbjct: 1072 RLVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLG--SSTGPVL 1129

Query: 247  HLNGQI-LGRHNGIINYTIGQRRGL 270
            H    + LG H+G+ N+T+GQR+G+
Sbjct: 1130 HFPSCLALGSHDGLWNFTVGQRKGV 1154


>gi|221481094|gb|EEE19502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
            putative [Toxoplasma gondii GT1]
          Length = 1579

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 136/325 (41%), Gaps = 78/325 (24%)

Query: 22   RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTL-----------QLYNSRKASKRKGS 66
            +V V +SGGVDSSV   LL++ G+      I V L           +L +S  A    G 
Sbjct: 813  QVAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGG 872

Query: 67   CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            C   +D+  A +VC    V   V   +E +   V+         G TP P   CN+ VKF
Sbjct: 873  CGWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKF 932

Query: 127  S---DLL-------SVTRQLG----------ADV------------LATGHYIR------ 148
                DLL       S  R  G          AD+            +A+GHY R      
Sbjct: 933  GAFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVRAAE 992

Query: 149  -SRLYV---------------------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             SR                        G + +RR  + R  D  +DQSYFL   +Q+QL 
Sbjct: 993  TSRRSEEGEDTEDTDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLR 1052

Query: 187  DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             L  P+GDM+K  VR LA  + L  A + DSQ +CF+         +      +  G ++
Sbjct: 1053 RLVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLG--SSTGPVL 1110

Query: 247  HLNGQI-LGRHNGIINYTIGQRRGL 270
            H    + LG H+G+ N+T+GQR+G+
Sbjct: 1111 HFPSCLALGSHDGLWNFTVGQRKGV 1135


>gi|294645485|ref|ZP_06723186.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
 gi|292639186|gb|EFF57503.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
          Length = 134

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 14/130 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++              G +  DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIR 148
             +ATGHY R
Sbjct: 110 AWVATGHYSR 119


>gi|76664739|emb|CAJ17809.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Candidatus Phytoplasma solani]
          Length = 185

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 12/186 (6%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVYDARRVCDTIN 84
           +S+V A LLK+ GY+V  V ++ ++S      KG+       C    D  DA +V   + 
Sbjct: 3   NSAVAALLLKQQGYEVEAVFMRNWDSNLNFDIKGNPTLNNDICSQELDYNDALKVSLQLG 62

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLAT 143
           +  +  D+ E +   V + F  +++   TP P + CN  +KF   +  VT +L  D +A 
Sbjct: 63  IKLHRIDFIEEYWKKVFLSFIDAFSNNLTPNPDILCNNEIKFKAFIDYVTDKLKPDYVAM 122

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY      V +    + + C  +D ++DQ+YFL   T  QL ++ FPL  + K  VR +
Sbjct: 123 GHYAD---IVTNQDLTKALAC-ALDQKKDQTYFLSQLTTSQLQNIIFPLAKLTKPEVRQI 178

Query: 204 AREMGL 209
           A + GL
Sbjct: 179 ALDNGL 184


>gi|167945139|ref|ZP_02532213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 145

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +P++ +++V MSGGVDSSV A LL   GY V G+ ++ +   +    K  C A  D+ D
Sbjct: 2   NHPRE-KIIVGMSGGVDSSVAALLLLEQGYQVEGLFMKNW---EEDDTKEYCSAATDLAD 57

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-R 134
           A  V D + +  +  ++   +   V   F   Y AG TP P V CNR +KF   L     
Sbjct: 58  ASSVADQLGIPLHSVNFSADYWERVFAYFLDEYRAGRTPNPDVLCNREIKFKAFLDYALS 117

Query: 135 QLGADVLATGHYIR 148
            LGA  +ATGHY R
Sbjct: 118 TLGASRIATGHYAR 131


>gi|167535113|ref|XP_001749231.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772384|gb|EDQ86037.1| predicted protein [Monosiga brevicollis MX1]
          Length = 495

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 12/226 (5%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103
           G++V GV ++ ++    +   G C A  D    + +   + +     D+ + + ++V   
Sbjct: 10  GHEVTGVFMRTWDELDET---GVCTAEGDWRHVQDIAQRLGIPCKRVDFVQEYWHSVFQV 66

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRI 162
                AAG TP P + CNR +KF       R QLGAD +A GHY R    V +       
Sbjct: 67  MLDELAAGATPNPDILCNRHIKFDAFYHFARDQLGADRVAMGHYAR----VDEREPDMPR 122

Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDIC 221
           + R  D  +DQSYFL       L    FPLG + K+ V+ LA   G  D+A + +S  +C
Sbjct: 123 LLRGCDDNKDQSYFLAGLPVHVLRHAAFPLGHLTKDRVKALAAAAGFSDVAGQRESMGLC 182

Query: 222 FVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQ 266
           FV + ++  +V++        G  VHL +G+ LG    +   T GQ
Sbjct: 183 FVGKRRFGALVQQYLP--PRPGVFVHLESGRQLGPVTDLNVITFGQ 226


>gi|213401743|ref|XP_002171644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Schizosaccharomyces japonicus yFS275]
 gi|211999691|gb|EEB05351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Schizosaccharomyces japonicus yFS275]
          Length = 414

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 126/298 (42%), Gaps = 34/298 (11%)

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G C + +D    ++V + + +     ++E  +   V  P    Y  G TP P V CNR V
Sbjct: 11  GGCTSERDWTLVKKVGEKLGIPVTRLNFEHDYWQRVFEPTLEHYRRGWTPNPDVLCNREV 70

Query: 125 KFSDLLSVTRQLGAD-----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           KF  L      + AD      +ATGHY R+   +  D     ++ RP D ++DQ+ FL  
Sbjct: 71  KFGALFEHLSHVMADSKRAWWVATGHYART--CIARDTNETCLL-RPTDAKKDQTLFLCN 127

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQ----QGKYFDVVKR 234
              Q L    FPL    KE V+  A   GL + A + +S  +CFV     +G + + +  
Sbjct: 128 IPYQALQRTIFPLWQHTKEQVKREAMLHGLEESATRPESMGLCFVSPRNIRGHFRNFLAE 187

Query: 235 INAGIALEGDI--VHLNGQILG---RHNGIINYTIGQRRGLGVAMGE-----PLFVVYLD 284
               +    D   V   G  +G   R  GI ++T+G++ GL +A  +     P +V   D
Sbjct: 188 Y---LEPSSDPLRVMFRGVCVGVYPRDKGIWSFTVGEKCGLSLAALQRVSQLPWYVWKKD 244

Query: 285 --KNSSRVIVGPRESLEVHR-IYLREINWLGDGL---FEDAVVDGFKCFVKIRSSQDP 336
              N+  V  G R  L   R     E  W        FE A  D   C V+IR  Q P
Sbjct: 245 VATNAVHVCPGYRHPLLFSRAATCSEWGWASPWCKRAFEGA--DDVACTVRIRHQQQP 300


>gi|88195431|ref|YP_500235.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87202989|gb|ABD30799.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 100

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   VC+ I + 
Sbjct: 1   MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF
Sbjct: 58  YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKF 97


>gi|313224567|emb|CBY20357.1| unnamed protein product [Oikopleura dioica]
 gi|313247180|emb|CBY35998.1| unnamed protein product [Oikopleura dioica]
          Length = 385

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 20/231 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +++RV VA+SGGVDS+V A LLK + G++VIGV  + ++S+  +   G C A  D   AR
Sbjct: 8   RNLRVAVALSGGVDSAVAAVLLKLQQGHEVIGVHSRNWDSKDEN---GVCQADADYDSAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136
           RV + + +     +  + +   V  PF  S     +      CN  +KF  +L   + Q+
Sbjct: 65  RVAEHLKIELVGINCVKEYWTEVFEPFLESTQNANSFNIDQLCNERIKFDAMLKKAKDQI 124

Query: 137 GADVLATGHY--IRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATT----------Q 182
             D  ATGHY  IR    VG       RR +             L  T           +
Sbjct: 125 HFDKFATGHYASIRKVEPVGQKLIATSRRCLSESTCFRTQNESTLSKTKRSISHGSARHK 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV 232
            ++  + FPLG + K  V+ +A E GL+ +A   +S  +CF+ + +  D +
Sbjct: 185 SRMIRVIFPLGSLNKNVVKAIATENGLEALAMARESMGVCFIGKRRMSDFL 235


>gi|237800552|ref|ZP_04589013.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023412|gb|EGI03469.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 184

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 18/180 (10%)

Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLG 271
           A K DS  ICF+ + ++ D +++     A  G+I    G+++GRHNG++ +TIGQR+GLG
Sbjct: 3   AKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTTGEVIGRHNGLMYHTIGQRQGLG 60

Query: 272 V-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG 323
           +     A  +P +V+  D  ++ +IVG       L    +   EI W+            
Sbjct: 61  IGGLKDASDDPWYVLVKDLGANELIVGQGNDHPWLFSSALVSSEIYWVNPVDLSTPR--- 117

Query: 324 FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  D      LGGG+I
Sbjct: 118 -RLTAKVRYRQGDQPCTLEKTADGYRAIFDDPQRAVTPGQSVVFYDGDI----CLGGGVI 172


>gi|153855260|ref|ZP_01996426.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814]
 gi|149752259|gb|EDM62190.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814]
          Length = 86

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
          +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +  A +  G CC    V DARRV
Sbjct: 5  KVVVGMSGGVDSSVAAWLLKNQGYDVIGVTMQIWQDEEEAAMEEHGGCCGLSAVDDARRV 64

Query: 80 CDTINVSHYVFDYEERFR 97
             +++ +YV ++++ F+
Sbjct: 65 AAALDIPYYVMNFKKEFK 82


>gi|81673663|gb|AAI09775.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
          Length = 263

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 22/218 (10%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV--- 232
           L    Q+ L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +  + + +   
Sbjct: 23  LGTVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEY 82

Query: 233 --KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290
              R    I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V
Sbjct: 83  LQPRPGRFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDV 135

Query: 291 IVGPR-ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDD 346
           +V PR +   ++R  LR   ++W+ +      V D   +C  + R     VP  +  N D
Sbjct: 136 LVAPRTDHPALYRDLLRTGRVHWIAEEPTAALVRDKMMECHFRFRHQMALVPCVLTLNQD 195

Query: 347 G-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           G V+V   K+   +A GQ  VFY  D      LG G I
Sbjct: 196 GTVWVTAVKAVRALAPGQFAVFYKGDE----CLGSGKI 229


>gi|256752920|ref|ZP_05493753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748200|gb|EEU61271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 151

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 9/143 (6%)

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G+   ++G+ LG H GII+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    
Sbjct: 13  GEFRDVHGKFLGYHKGIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEE 72

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
           +     N++     E  +    K   KIR ++++   +     +D V V F K +  +  
Sbjct: 73  LISSNNNFISIEKLEKEM----KVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITP 128

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY  D     V+GGGII 
Sbjct: 129 GQSVVFYDKDV----VVGGGIIE 147


>gi|126920887|gb|AAI33484.1| TRMU protein [Bos taurus]
          Length = 858

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 22/213 (10%)

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRI 235
           Q+ L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +  + + +      R 
Sbjct: 623 QEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQPRP 682

Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295
              I++E      + ++LG H G   YT+GQR  +G  + EP +VV  D     V+V PR
Sbjct: 683 GRFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPR 735

Query: 296 -ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYV 350
            +   ++R  LR   ++W+ +      V D   +C  + R     VP  +  N DG V+V
Sbjct: 736 TDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWV 795

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              K+   +A GQ  VFY  D      LG G I
Sbjct: 796 TAVKAVRALAPGQFAVFYKGD----ECLGSGKI 824


>gi|88803300|ref|ZP_01118826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
 gi|88780866|gb|EAR12045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
          Length = 239

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 46/234 (19%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248
           FP+G++ K  VR +A++  L  A+K DSQ +CF+ + +  + +++       EG+I+ + 
Sbjct: 13  FPIGELTKPEVRAIAKQADLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGEIIKIP 70

Query: 249 --------------------------------NGQILGRHNGIINYTIGQRRGLGV-AMG 275
                                           +G+++G+H G   +T GQR+GL V    
Sbjct: 71  SDFSQYKRHVPEFENKECELEYFATKFAYAAEDGKVVGKHQGAHYFTKGQRKGLDVGGTK 130

Query: 276 EPLFVVYLDKNSSRVIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKI 330
           E L+V+  D N++ +  G  ++ + ++R  L    +EI+W+   L   A+ +  +   +I
Sbjct: 131 EALYVIETDVNTNIIYTGEGKNHQGLYRNVLFVSNKEIHWIRKDLI-LAIGENLRVEARI 189

Query: 331 RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           R  Q      + + + G+YV+FE  +  +  GQ   +Y ++     +LG G+IS
Sbjct: 190 RYRQTLEKAVLYKVEKGMYVEFENKQSAIQEGQFVAWYQNEE----LLGSGVIS 239


>gi|289807026|ref|ZP_06537655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 108

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 5/97 (5%)

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R       +GK R  + R +D  +DQSYFL+    +Q+    FP+G+++K
Sbjct: 1   ADYIATGHYVRR---ADVNGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEK 55

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             VR +A ++GL  A K DS  ICF+ + K+ D + R
Sbjct: 56  PQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGR 92


>gi|196020529|ref|XP_002119101.1| hypothetical protein TRIADDRAFT_63064 [Trichoplax adhaerens]
 gi|190576957|gb|EDV18413.1| hypothetical protein TRIADDRAFT_63064 [Trichoplax adhaerens]
          Length = 116

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 8/119 (6%)

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325
           QR+G+G++  +PL+V+ +D  +++VIVG +E L+  ++ ++++NWL +   ++A+     
Sbjct: 1   QRKGIGISNNKPLYVIKIDPITNKVIVGEKEDLKSTKLKIKDLNWLSN---DEALEKDIS 57

Query: 326 CFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           C V++RS+   +   V+   +G+  V  +    G+  GQACV Y  D    RVLGGG I
Sbjct: 58  CSVRLRSNHKEINADVKYLGNGIADVILKSPYYGITPGQACVIYDKD----RVLGGGWI 112


>gi|218754787|ref|ZP_03533583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
          Length = 85

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYA 109
           +  YV+D+ E+F+  VI  F SSYA
Sbjct: 60  IPFYVWDFAEKFKEDVINDFVSSYA 84


>gi|119593830|gb|EAW73424.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_c [Homo sapiens]
          Length = 281

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 28/208 (13%)

Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRINAGIALEG 243
           FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R    I++E 
Sbjct: 50  FPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIE- 108

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR 302
                + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR +   ++R
Sbjct: 109 -----DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYR 162

Query: 303 IYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
             LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V+V   ++
Sbjct: 163 DLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 219

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A+GQ  VFY  D      LG G I
Sbjct: 220 VRALATGQFAVFYKGDE----CLGSGKI 243


>gi|116283770|gb|AAH27991.1| TRMU protein [Homo sapiens]
          Length = 267

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 28/208 (13%)

Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRINAGIALEG 243
           FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R    I++E 
Sbjct: 36  FPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIE- 94

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR 302
                + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR +   ++R
Sbjct: 95  -----DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYR 148

Query: 303 IYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
             LR   ++W+ +     L  D +++   C  + R     VP  +  N DG V+V   ++
Sbjct: 149 DLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 205

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A+GQ  VFY  D      LG G I
Sbjct: 206 VRALATGQFAVFYKGDE----CLGSGKI 229


>gi|224419183|ref|ZP_03657189.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT
           98-5491]
          Length = 155

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 13/160 (8%)

Query: 229 FDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNS 287
            DV+K+ +     +GD++   G  +G H G + YTIG+R+G  +     P +V+ ++   
Sbjct: 1   MDVLKK-HHKTEQKGDVLDSKGNKIGTHKGYMQYTIGKRKGFTIKGALTPHYVLKINPQD 59

Query: 288 SRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV----QR 343
           + +I G +E L  +++    ++   +   ++ V+D   C VKIR     +P  +      
Sbjct: 60  NTIIAGSKEELATNKVQALNLSLPKEWFQDNKVLD---CEVKIRYKSHKIPAQITLMSNG 116

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           N D +  + ++S  GVA+GQA V Y    N   VLGGG I
Sbjct: 117 NQDIITANLKESAYGVANGQALVLY----NGNEVLGGGFI 152


>gi|68073255|ref|XP_678542.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499041|emb|CAH96244.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 750

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 48/234 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V   +SGG+DS +   LL++  +  D        YN           C+  D+   + +
Sbjct: 379 KVAHMLSGGIDSLMALILLEKKKFYIDNFYFNFTYYN-----------CSKNDLKYVKNI 427

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA- 138
           C   N  H +   +E + N V +P   SY+ G+ P P + CN+ +K++  L   + +   
Sbjct: 428 CKNRNNLHIININKEYYEN-VFLPMLRSYSKGQVPNPDIVCNKKIKYNFFLKTIKSMSKL 486

Query: 139 -------DVLATGHY---------------------IRSRLYVGDDGKRRRIMCRPM--- 167
                    ++TGHY                     I+ ++   D  K+ R  C+ +   
Sbjct: 487 KGKKYNYSYISTGHYAMISTNNPQNCNNIFNNNFPYIKGKMENKDKKKKER--CKLIVSS 544

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           DL++DQ++FL + +++QL    FPL    K  +R   ++  +   + ++++ +C
Sbjct: 545 DLKKDQTFFLSSFSEKQLSKFLFPLSLYNKNYIRMFMKKNNITNYNPNETKGLC 598


>gi|218754785|ref|ZP_03533581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
          Length = 154

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEV 300
           +V  +G +L  H+G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V
Sbjct: 2   VVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDV 61

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             +  R   +   G      VD   C V++R+  + V    +   D ++V       GVA
Sbjct: 62  QTLTGRAPVFTA-GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVA 117

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387
            GQ  V Y  D     VLG   I+G+ 
Sbjct: 118 RGQTLVLYRPDPAGDEVLGSATIAGAS 144


>gi|170046207|ref|XP_001850666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
 gi|167869052|gb|EDS32435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
          Length = 126

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LLKR G+DV    ++ ++        G C   QD  DA+++C  +++     +
Sbjct: 14  DSAVTAYLLKRKGFDVRAAFMKNWD---LIDENGYCSGEQDWLDAQKLCRQLDIPLEQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHY 146
           + + +   V   F   Y+AG TP P + CNR +KF+      R+ +GAD + TGHY
Sbjct: 71  FVKDYWLEVFGSFLKDYSAGITPNPDMLCNRRIKFNLFNKHARERMGADAIVTGHY 126


>gi|194381158|dbj|BAG64147.1| unnamed protein product [Homo sapiens]
          Length = 131

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G C A +D  DA RVC  +++  +   Y + + N V   F + Y  G TP P + CN+ +
Sbjct: 11  GVCTADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHI 70

Query: 125 KFSDLLS-VTRQLGADVLATGHYIRSRL 151
           KFS         LGAD +ATGHY R+ L
Sbjct: 71  KFSCFFHYAVDNLGADAIATGHYARTSL 98


>gi|207110357|ref|ZP_03244519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 110

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +I+G H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  +
Sbjct: 1   EIIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAQNKS 60

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            + D  F+       + F+K R    PV  FV   D+ + V+F++   GVA GQA V
Sbjct: 61  LMKD--FKSG-----EYFIKARYRSVPVKAFVSLKDEVIEVEFKEPFYGVAKGQALV 110


>gi|156093385|ref|XP_001612732.1| tRNA methyl transferase [Plasmodium vivax SaI-1]
 gi|148801606|gb|EDL43005.1| tRNA methyl transferase, putative [Plasmodium vivax]
          Length = 837

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 51/255 (20%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           VVSE + L ++      +  RV   +SGGVDS +   LL+R  + V    L   +     
Sbjct: 221 VVSELSSLYTIH-----QYPRVAHMLSGGVDSLMALRLLERKKFYVHNFYLHFAHQD--- 272

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                 C+  D+   +++C     + ++ +  E +   V++P   SY+ G+ P   + CN
Sbjct: 273 ------CSKSDLQYVKQICSK-RKNLFIVNVNEEYTEQVLIPMLRSYSEGQIPNADILCN 325

Query: 122 RTVKFSDLLSVTRQL--------GADVLATGHYI---------RSRL------YVGDD-- 156
             VK+  L+   R+L            ++TGHY           +RL      YVGD+  
Sbjct: 326 EKVKYHLLMRTMRKLCRERGGGWNYSYVSTGHYAMISTNDEANANRLFNGNFPYVGDELD 385

Query: 157 ------GKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
                 G R+R   I+ R  D  +DQ++FL + +++QL    FPL   +K  V+ +    
Sbjct: 386 GEIPRRGPRKRYKLIVGR--DERKDQTFFLSSFSEKQLSKFLFPLCLRRKSDVKRIMERR 443

Query: 208 GLDIADKSDSQDICF 222
                ++ +++ +C 
Sbjct: 444 AAGQYNRRETRGLCL 458


>gi|221053929|ref|XP_002261712.1| tRNA methyl transferase [Plasmodium knowlesi strain H]
 gi|193808172|emb|CAQ38875.1| tRNA methyl transferase, putative [Plasmodium knowlesi strain H]
          Length = 906

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 42/233 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV   +SGGVDS +   LL++  + V    L   +           C+  D+   +++C 
Sbjct: 331 RVAHMLSGGVDSLMALRLLEKKKFYVHNFFLHFAHQE---------CSKSDLRYVKKICS 381

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139
               + ++ +  E +   V++P   SYA G+ P   + CN  VK++ L+   ++L  +  
Sbjct: 382 K-RKNLFIVNINEEYTEQVLIPMLRSYADGQIPNADIMCNEKVKYNLLMRKMKKLCRERG 440

Query: 140 ------VLATGHYIR---------SRL------YVGD--DGKRRRIMCRP-------MDL 169
                  ++TGHY           ++L      YVGD  DGK  R   R         D+
Sbjct: 441 GRWDYSYVSTGHYAMISTNDVSNANKLFSGNFPYVGDDTDGKMPRRTPRKRYKLVVGRDV 500

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
           ++DQ++FL + +++QL    FPL   +K  ++ +         ++ +++ +C 
Sbjct: 501 KKDQTFFLSSLSEEQLSKFLFPLCLHRKSDIKMVMERREAGKYNQRETRGLCL 553


>gi|70952350|ref|XP_745349.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525644|emb|CAH76839.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 601

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 47/234 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V   +SGG+DS +   LL++  + V        +           C+  D+   + +C 
Sbjct: 260 KVAHMLSGGIDSLMALILLEKKKFYVDNFYFNFAHYD---------CSKNDLKYVKNICK 310

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQLG 137
             N  H +    E + N V +P   SY+ GE P P + CN+ +K++ LL    S+++  G
Sbjct: 311 NRNNLHIININNEYYEN-VFLPMLKSYSKGEVPNPDIVCNQKIKYNFLLKTIKSISKSKG 369

Query: 138 ADV----LATGHYIRSRLYVGDDGKR--------------------------RRIMCRPM 167
            D     ++TGHY    +   +D +                           R  +    
Sbjct: 370 TDFNYSYISTGHY---AMISTNDAQNCNNIFNNNFPYVKGKMGNKKNKKNKKRYKLVVSS 426

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           DL++DQ++FL + +++QL    FPLG   K  ++   ++  +   + ++++ +C
Sbjct: 427 DLKKDQTFFLSSFSEKQLSKFLFPLGLYNKNDIKTFMKKHNITDYNPNETKGLC 480


>gi|313142687|ref|ZP_07804880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131718|gb|EFR49335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter canadensis MIT 98-5491]
          Length = 140

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G  +G H G + YTIG+R+G  +     P +V+ ++   + +I G +E L  +++    +
Sbjct: 6   GNKIGTHKGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKVQALNL 65

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP----VFVQRNDDGVYVDFEKSEVGVASGQA 364
           +   +   ++ V+D   C VKIR     +P    +    N D +  + ++S  GVA+GQA
Sbjct: 66  SLPKEWFQDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGVANGQA 122

Query: 365 CVFYTSDSNEARVLGGGII 383
            V Y    N   VLGGG I
Sbjct: 123 LVLY----NGNEVLGGGFI 137


>gi|213850128|ref|ZP_03381026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 116

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFL 112


>gi|289763200|ref|ZP_06522578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
 gi|289710706|gb|EFD74722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
          Length = 251

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVH 247
           FP+GD  K  +R  A            +    F+  G  K F + +RI       G +V 
Sbjct: 46  FPIGDTPKRQIRAEAAAAAWRSPTSRIATTSAFIPSGNTKAF-LGERIGV---RRGVVVD 101

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +G +L  H+G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +
Sbjct: 102 ADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTL 161

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
             R   +   G      VD   C V++R+  + V    +   D ++V       GVA GQ
Sbjct: 162 TGRAPVFTA-GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQ 217

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
             V Y  D     VLG   I+G+ 
Sbjct: 218 TLVLYRPDPAGDEVLGSATIAGAS 241


>gi|289803739|ref|ZP_06534368.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 109

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKF 108


>gi|49471691|gb|AAT66133.1| tRNA (5-methylaminomethyl-2-thiouridyl-methyltransferase-like
           protein [Mycoplasma arthritidis]
          Length = 109

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S   +   G+       C   QD  
Sbjct: 4   RVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDYV 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           DA+ V   +N+  Y  D+ + + + V       Y  G TP P + C
Sbjct: 64  DAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFC 109


>gi|229025856|ref|ZP_04182254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1272]
 gi|228735467|gb|EEL86064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1272]
          Length = 190

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 19/177 (10%)

Query: 214 KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV- 272
           K DS  ICF+ +  + D +   N   A  G +  L+G++ G+H+G++ YTIGQR GLG+ 
Sbjct: 12  KKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIG 69

Query: 273 AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-----INWLGDGLFEDAVVDGFKCF 327
             G+P F V   KN    I+   +      +Y  E     + W+ +   E      FKC 
Sbjct: 70  GNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKETE----FKCT 123

Query: 328 VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            K R  Q    V VQ  D+  V +  ++    +  GQA VFY  D      LGG  I
Sbjct: 124 AKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGD----ECLGGATI 176


>gi|72392431|ref|XP_847016.1| tRNA-methyl transferase [Trypanosoma brucei TREU927]
 gi|62358954|gb|AAX79404.1| tRNA-methyl transferase, putative [Trypanosoma brucei]
 gi|70803046|gb|AAZ12950.1| tRNA-methyl transferase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 557

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 27/187 (14%)

Query: 62  KRKGSCCAGQDVYDARRVCDTINV-----SHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           +R+    A QD +DA  V     +     +  +F++   +  +      +SYA G T   
Sbjct: 113 RRRWCEAAEQDYHDAAEVARFAGLLSESEALPLFNFSSHYVTSCFDRMLNSYARGNTLNV 172

Query: 117 CVDCNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGD------------DGKRRRIM 163
            V CN  +KF  LL      G A  +ATGHY R+ + + D            +G+  R++
Sbjct: 173 DVLCNSEIKFGALLHALHTSGRAQYVATGHYART-ISLADTVFCSAAASESGNGRYTRVI 231

Query: 164 CRPM----DLERDQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREMGLD-IADKSD 216
            RP     DL  DQ+ FL   +Q QL ++ FPLG +  +K  VR +A  +GL  ++ K  
Sbjct: 232 ARPFTAGQDLN-DQTLFLSRLSQLQLSNVIFPLGHVFQRKADVRVVASHLGLTRVSAKKT 290

Query: 217 SQDICFV 223
           S  +CFV
Sbjct: 291 STGLCFV 297


>gi|126654200|ref|ZP_01726001.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
 gi|126589339|gb|EAZ83493.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
          Length = 160

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESL 298
           A  G++  + G ++G+H+G++ YT+GQR GLG+   GEP FV+  D   + ++VG  +  
Sbjct: 6   AQPGNMETMYGVVMGKHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVG--QGF 63

Query: 299 EVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           +   +Y   ++ +         + G F C  K R  Q   PV V+   DG  ++ F +  
Sbjct: 64  DNEHLYSTSLSAVKMNYTSTKKLPGKFSCTAKFRYRQTDTPVEVEILADGRTHITFAEPV 123

Query: 357 VGVASGQACVFYTSDSNEARVLGGGII 383
             +  GQA V Y  D  E   +GGG I
Sbjct: 124 RAITPGQAVVLY--DGEEC--IGGGTI 146


>gi|261330212|emb|CBH13196.1| tRNA-methyl transferase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 557

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 27/187 (14%)

Query: 62  KRKGSCCAGQDVYDARRVCDTINV-----SHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           +R+    A QD +DA  V     +     +  +F++   +  +      +SYA G T   
Sbjct: 113 RRRWCEAAEQDYHDAAEVARFAGLLSESEALPLFNFSSHYVTSCFDRMLNSYARGNTLNV 172

Query: 117 CVDCNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGD------------DGKRRRIM 163
            V CN  +KF  LL      G A  +ATGHY R+ + + D            +G+  R++
Sbjct: 173 DVLCNSEIKFGALLHALHTSGRAQYVATGHYART-ISLADTVFCSAAASESGNGRYTRVI 231

Query: 164 CRPM----DLERDQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREMGLD-IADKSD 216
            RP     DL  DQ+ FL   ++ QL ++ FPLG +  +K  VR +A  +GL  ++ K  
Sbjct: 232 ARPFTAGQDLN-DQTLFLSRLSRLQLSNVIFPLGHVFQRKADVRVVASHLGLTRVSAKKT 290

Query: 217 SQDICFV 223
           S  +CFV
Sbjct: 291 STGLCFV 297


>gi|260889734|ref|ZP_05900997.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
 gi|260860340|gb|EEX74840.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
          Length = 135

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 18/140 (12%)

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIY 304
           +LG HNG++ YTIGQR+G+G+       GEP FVV   L+KN   V  G    L    + 
Sbjct: 1   MLGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLI 60

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
             + N++ +  F        +C VK R  Q D   V  + N++   V F++ +  V  GQ
Sbjct: 61  ATDFNFINEVRFP------LECTVKFRYRQKDTKAVINKLNENEYEVIFDEPQKAVTLGQ 114

Query: 364 ACVFYTSDSNEARVLGGGII 383
             V Y  +      LGGGII
Sbjct: 115 IVVAYDGEI----CLGGGII 130


>gi|119593831|gb|EAW73425.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_d [Homo sapiens]
          Length = 203

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 16/143 (11%)

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR- 306
           + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR +   ++R  LR 
Sbjct: 31  DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRT 89

Query: 307 -EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
             ++W+ +     L  D +++   C  + R     VP  +  N DG V+V   ++   +A
Sbjct: 90  SRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALA 146

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
           +GQ  VFY  D      LG G I
Sbjct: 147 TGQFAVFYKGDE----CLGSGKI 165


>gi|157864414|ref|XP_001680917.1| tRNA-methyl transferase [Leishmania major strain Friedlin]
 gi|68124210|emb|CAJ06972.1| putative tRNA-methyl transferase [Leishmania major strain Friedlin]
          Length = 603

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 24/197 (12%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARRVCDTINV----- 85
           + S+ AA    D   V      + N    S   G C   Q D  DA++V  T+++     
Sbjct: 80  EPSITAA--SYDAAPVQHTPFFMRNWHDDSAASGWCVRAQVDYDDAQQVARTLDLLPRDG 137

Query: 86  -SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DV 140
                +D    +         ++YAAG T    V CN  +KF  L    R+ G+     +
Sbjct: 138 TPLPWYDLSSEYVEQCFERMLAAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSVFSETL 197

Query: 141 LATGHYIRSR-----LYVGDDGKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFP 191
           LATGHY R+      ++ GDD KRR + + RP    R   DQ+ FL       L    FP
Sbjct: 198 LATGHYARTWDLPHGVHGGDDAKRRPVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFP 257

Query: 192 LGDM--KKESVRDLARE 206
           LG +   K  VR LAR 
Sbjct: 258 LGHLFTCKADVRALARH 274


>gi|83776736|gb|ABC46690.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase
           precursor transcript variant 1 [Homo sapiens]
 gi|83776738|gb|ABC46691.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase
           precursor transcript variant 2 [Homo sapiens]
          Length = 99

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVI 101
            +++  +   Y + + N V 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVF 82


>gi|258597066|ref|XP_001347476.2| tRNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|254922434|gb|AAN35389.2| tRNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 1084

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+   +SGGVDS +   LL+R  + V        N+          C+  D+   + +C 
Sbjct: 449 RIAHMLSGGVDSLMALHLLERKKFYVDNYFFNFTNAD---------CSKNDIKYVKDICK 499

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----- 136
               + ++ +  + + + V+VP    YA G+ P P + CN+ +K++  L V + +     
Sbjct: 500 NNKRNLFIININDEYFDEVLVPMLFFYADGKVPNPDIMCNQKIKYNFFLKVIKSIYKQKW 559

Query: 137 ---------GADVLATGHY 146
                      D ++TGHY
Sbjct: 560 NYRTKSKLCNYDFISTGHY 578


>gi|82594890|ref|XP_725616.1| tRNA-methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480689|gb|EAA17181.1| probable tRNA-methyltransferase [Plasmodium yoelii yoelii]
          Length = 782

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 55/243 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V   +SGGVDS +   LL++  +  D        YN           C+  D+   + +
Sbjct: 377 KVAHMLSGGVDSLMALILLEKKKFYIDNFYFNFTHYN-----------CSKNDLKYVKNI 425

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV------- 132
           C   N  H +    E + N V +P   SY+ G+ P P + CN+ +K++  L         
Sbjct: 426 CKNRNNLHIININNEYYEN-VFLPMLRSYSKGQVPNPDIVCNKKIKYNFFLKTIKKMSKI 484

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM------------------------ 167
             ++     ++TGHY        ++         P                         
Sbjct: 485 KGKKFNYAYISTGHYAMISTNNSENCNNLFNNNFPYIKGKNEKKIKNKNINKIKDKNKIR 544

Query: 168 ---------DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
                    DL++DQ++FL + +++QL    FPL    K  ++   ++  +   + ++++
Sbjct: 545 ERCKLVVSNDLKKDQTFFLSSFSEKQLSKFLFPLSLYNKNYIKLFMKKNNITNYNPNETK 604

Query: 219 DIC 221
            +C
Sbjct: 605 GLC 607


>gi|83776740|gb|ABC46692.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase
           precursor transcript variant 3 [Homo sapiens]
          Length = 99

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV ++SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCSLSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVI 101
            +++  +   Y + + N V 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVF 82


>gi|213857827|ref|ZP_03384798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 89

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHL 248
           P+GD  K  +R  A   GL +A+K DS DICF+  G  K F + +RI       G +V  
Sbjct: 1   PIGDTPKRQIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDA 56

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP 277
           +G +L  H+G+  +TIGQRRGLG+A   P
Sbjct: 57  DGVVLASHDGVHGFTIGQRRGLGIAGPGP 85


>gi|160943988|ref|ZP_02091218.1| hypothetical protein FAEPRAM212_01489 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444664|gb|EDP21668.1| hypothetical protein FAEPRAM212_01489 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104809|emb|CBL02353.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 180

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 30/185 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V+M G VD  VV  +L++ G+ V G  +QL   + A               AR+  +
Sbjct: 19  KVLVSMDGSVDCGVVVRILQQQGFGVAGAVVQLAADQSAWAAA-----------ARQAAE 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V   E               A  + P   +      +F+ LL+   +LG   +
Sbjct: 68  ALGIECIVLKAE---------------ALADQPAEVLGSGNDARFAALLTAADKLGIQYI 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGH+ R  L  G DG     +C  +D   D+S  L A  Q  L  L  PLG+     V+
Sbjct: 113 ATGHHARVEL--GSDGVHT--VCPAVDAALDESAALAALPQDTLARLLLPLGEFTAADVQ 168

Query: 202 DLARE 206
           ++A++
Sbjct: 169 EMAQD 173


>gi|207092518|ref|ZP_03240305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 81

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 12/90 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K            D+Y  +A++
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSY 108
            C+ + +   V D+++ F++AV   F ++Y
Sbjct: 51  ACEFLGIPLEVLDFQKDFKSAVYDEFINAY 80


>gi|51593662|gb|AAH80631.1| TRMU protein [Homo sapiens]
          Length = 222

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 16/133 (12%)

Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRINAGIALEG 243
           FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   +      R    I++E 
Sbjct: 36  FPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIE- 94

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR 302
                + ++LG H G   YT+GQR  +G  + EP +VV  D     V V PR +   ++R
Sbjct: 95  -----DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYR 148

Query: 303 IYLR--EINWLGD 313
             LR   ++W+ +
Sbjct: 149 DLLRTSRVHWIAE 161


>gi|257387062|ref|YP_003176835.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halomicrobium mukohataei DSM 12286]
 gi|257169369|gb|ACV47128.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halomicrobium mukohataei DSM 12286]
          Length = 289

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 40/192 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL     +D +G      +   A   K       ++ DA RV D 
Sbjct: 21  VLIAFSGGVDSSVVAAL----AHDALG------DDAVACTAKSETLPEAELVDANRVADE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E    A +               C  C R+++ S +    R+LG DV+ 
Sbjct: 71  IGIRHEIVEFSELDSEAFV---------ANDDERCYHC-RSMRLSAMYDEARRLGIDVVC 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G+  R   R ++     S  L                D+ KE VR+
Sbjct: 121 DG------TNASDPGEGHRPGLRAVEELNAYSPLLE--------------HDITKEEVRE 160

Query: 203 LAREMGLDIADK 214
           +ARE  L +ADK
Sbjct: 161 IAREYDLSVADK 172


>gi|322496678|emb|CBZ31747.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 613

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRSR-----LYVGDD 156
           ++YAAG T    V CN  +KF  L    R+ G+     +LATGHY R+      ++ GD+
Sbjct: 159 AAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDN 218

Query: 157 GKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLARE 206
            KRR + + RP    R   DQ+ FL       L    FPLG +   K  VR LAR 
Sbjct: 219 AKRRLVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFPLGHLFTCKADVRALARH 274


>gi|321398957|emb|CAM65601.2| putative tRNA-methyl transferase [Leishmania infantum JPCM5]
          Length = 613

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRSR-----LYVGDD 156
           ++YAAG T    V CN  +KF  L    R+ G+     +LATGHY R+      ++ GD+
Sbjct: 159 AAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDN 218

Query: 157 GKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLARE 206
            KRR + + RP    R   DQ+ FL       L    FPLG +   K  VR LAR 
Sbjct: 219 AKRRLVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFPLGHLFTCKADVRALARH 274


>gi|257438705|ref|ZP_05614460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198840|gb|EEU97124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 170

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 49/193 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           +V+V + GG        +L++ G+ V+G  ++L             C    V DA +   
Sbjct: 19  KVLVGLCGGTGCKAAVRILQQQGFAVMGAVVRL-------------CTDDPVVDAAKEAA 65

Query: 80  ------CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                 C T+N S                   +S  A ET  P       ++F  LL+  
Sbjct: 66  KALGIECITLNASEL-----------------ASQLAEETAAPA-----DLRFPALLAAA 103

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LG   +ATGH  R+R+  G DG    ++C P ++  D+S  L A  Q+ L  L  PLG
Sbjct: 104 DRLGIQYIATGH--RARVETGADGVH--VLC-PAEI-ADESARLAALPQETLGRLILPLG 157

Query: 194 DMKKESVRDLARE 206
           D   E V ++A E
Sbjct: 158 DFSPEDVAEMAAE 170


>gi|154332268|ref|XP_001562508.1| tRNA-methyl transferase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059398|emb|CAM41624.1| putative tRNA-methyl transferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 593

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 81/200 (40%), Gaps = 30/200 (15%)

Query: 54  LYNSRKASKRKGSCCAGQ-DVYDARRVCDTINV------SHYVFDYEERFRNAVIVPFAS 106
           ++N        G C   Q D  DA++V  T+++          +D+   +          
Sbjct: 96  MHNWHDDKAASGWCVRAQVDYDDAQQVAKTLDLLPRDGTPLPSYDFSSEYAEQCFERMLD 155

Query: 107 SYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRS-RLYVGDDG---- 157
           +YA G T    V CN  +KF  L    R+ G+     +LATGHY R+  L  GD G    
Sbjct: 156 AYAVGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWNLSRGDHGGSNE 215

Query: 158 KRRRIMCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREM----- 207
           ++  ++ RP    R   DQS FL       L    FPLG +   K  VR LA        
Sbjct: 216 RQPVLLVRPCSAGRDLNDQSVFLSRVPPSALASAIFPLGHLFTCKADVRALATHSFGHSG 275

Query: 208 GL----DIADKSDSQDICFV 223
           G+     I  K  S  ICFV
Sbjct: 276 GMAAVAHIPQKKTSTGICFV 295


>gi|55379466|ref|YP_137316.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049]
 gi|55232191|gb|AAV47610.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049]
          Length = 290

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 44/194 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL     YD +G      +   A   K       ++ DA RV + 
Sbjct: 21  VLIAFSGGVDSSVVAAL----AYDALG------DDAIACTAKSETLPAAELTDATRVAEE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E           S        + C  C R+++   +    R+LG D++ 
Sbjct: 71  IGIRHEIVEFSE---------LDSEEFMQNDDMRCYHC-RSMRLGAMYDRARELGIDIVC 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G+  R   R +                +  D   PL   D++K  V
Sbjct: 121 DG------TNASDTGEGHRPGLRAV----------------EELDAYSPLLEHDIEKSEV 158

Query: 201 RDLAREMGLDIADK 214
           R++ARE  L +ADK
Sbjct: 159 REIAREYDLSVADK 172


>gi|322488380|emb|CBZ23626.1| putative tRNA-methyl transferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 603

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 25/188 (13%)

Query: 44  GYDVIGVTLQLY---NSRKASKRKGSCCAGQ-DVYDARRVCDTINVSHY------VFDYE 93
           GY  + V    +   N    +   G C   Q D  DA++V   +++  +      ++D+ 
Sbjct: 87  GYAAVPVQYTPFFMRNWHDDNTASGWCVRAQVDYDDAQQVARALDLLPHDGTPLPLYDFS 146

Query: 94  ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----LGADVLATGHYIRS 149
             +         ++YA G T    V CN  +KF  L    R+        +LATGHY R+
Sbjct: 147 SEYVEQCFERMLAAYAVGHTLNVDVLCNSKIKFGALTRALRRTRSVFSETLLATGHYART 206

Query: 150 R-----LYVGDDGKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKE 198
                 ++ G+D KRR + + RP    R   DQ+ FL       L    FPLG +   K 
Sbjct: 207 WHLPRGVHSGEDAKRRPVLLVRPCSAGRDLNDQTVFLSRVPPSALARAIFPLGHLFTCKA 266

Query: 199 SVRDLARE 206
            VR LAR 
Sbjct: 267 DVRALARH 274


>gi|312971269|ref|ZP_07785447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
 gi|42583|emb|CAA41994.1| ORF-15 [Escherichia coli K-12]
 gi|310336471|gb|EFQ01657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
          Length = 133

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 17/131 (12%)

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGD 313
           +T+GQR+GLG+        EP +VV  D +N+  V+    E   +  + L  ++++W+  
Sbjct: 3   HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDR 62

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
             F   +    +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY    
Sbjct: 63  EPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY---- 114

Query: 373 NEARVLGGGII 383
           N    LGGGII
Sbjct: 115 NGEVCLGGGII 125


>gi|313113466|ref|ZP_07799055.1| hypothetical protein HMPREF9436_00903 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624193|gb|EFQ07559.1| hypothetical protein HMPREF9436_00903 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 176

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 30/185 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V M G  + +V   +L++ G+ V G  ++L   + A           D  +A++  +
Sbjct: 19  KVLVQMDGSRECAVAVRILQQQGFAVAGAAVRLAAEQTA-----------DAENAKKAAE 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V + E     A+    A     G TPL          F+ LL+   +LG   +
Sbjct: 68  ALGIECIVLNAE-----ALAGQDADVLGEGGTPL----------FAALLTAADKLGMQYV 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           AT H  R+R+  G DG     +C P     D S  L A  Q+ L  L  PLGD   E V 
Sbjct: 113 ATTH--RARVETGADGVH--TVCPPAGTGSDDSTILAALPQETLARLILPLGDFAPEDVA 168

Query: 202 DLARE 206
           ++A +
Sbjct: 169 EMAED 173


>gi|253730864|ref|ZP_04865029.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725399|gb|EES94128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 70

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADK 214
           DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A ++GL  A K
Sbjct: 8   DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKK 64


>gi|309807684|ref|ZP_07701623.1| tRNA-specific 2-thiouridylase MnmA domain protein [Lactobacillus
          iners LactinV 01V1-a]
 gi|308169058|gb|EFO71137.1| tRNA-specific 2-thiouridylase MnmA domain protein [Lactobacillus
          iners LactinV 01V1-a]
          Length = 56

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
          +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    S   G C A +D
Sbjct: 7  IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATED 55


>gi|110803765|ref|YP_699484.1| argininosuccinate synthase [Clostridium perfringens SM101]
 gi|110684266|gb|ABG87636.1| thiamin biosynthesis protein ThiI [Clostridium perfringens SM101]
          Length = 326

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMISGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|227364875|ref|ZP_03848921.1| argininosuccinate synthase [Lactobacillus reuteri MM2-3]
 gi|325682500|ref|ZP_08162017.1| argininosuccinate synthase [Lactobacillus reuteri MM4-1A]
 gi|227070079|gb|EEI08456.1| argininosuccinate synthase [Lactobacillus reuteri MM2-3]
 gi|324978339|gb|EGC15289.1| argininosuccinate synthase [Lactobacillus reuteri MM4-1A]
          Length = 415

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG         V DA+
Sbjct: 10  KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 69

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           R            D+ E+F    ++P   ++A  E   P V   +R +    L++V  Q 
Sbjct: 70  R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 113

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 114 GATAIAHG 121


>gi|227544918|ref|ZP_03974967.1| argininosuccinate synthase [Lactobacillus reuteri CF48-3A]
 gi|300910054|ref|ZP_07127514.1| argininosuccinate synthase [Lactobacillus reuteri SD2112]
 gi|227185085|gb|EEI65156.1| argininosuccinate synthase [Lactobacillus reuteri CF48-3A]
 gi|300892702|gb|EFK86062.1| argininosuccinate synthase [Lactobacillus reuteri SD2112]
          Length = 415

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG         V DA+
Sbjct: 10  KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 69

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           R            D+ E+F    ++P   ++A  E   P V   +R +    L++V  Q 
Sbjct: 70  R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 113

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 114 GATAIAHG 121


>gi|194467785|ref|ZP_03073771.1| Argininosuccinate synthase [Lactobacillus reuteri 100-23]
 gi|194452638|gb|EDX41536.1| Argininosuccinate synthase [Lactobacillus reuteri 100-23]
          Length = 410

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG         V DA+
Sbjct: 5   KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           R            D+ E+F    ++P   ++A  E   P V   +R +    L++V  Q 
Sbjct: 65  R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAIAHG 116


>gi|227529160|ref|ZP_03959209.1| argininosuccinate synthase [Lactobacillus vaginalis ATCC 49540]
 gi|227350923|gb|EEJ41214.1| argininosuccinate synthase [Lactobacillus vaginalis ATCC 49540]
          Length = 421

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG         V DA+
Sbjct: 10  KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGKQVGAWKSVVIDAK 69

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                        D+ E+F    ++P   ++A  E   P V   +R +    L++V R+ 
Sbjct: 70  H------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVAREY 113

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 114 GATAIAHG 121


>gi|146077335|ref|XP_001463247.1| tRNA-methyl transferase [Leishmania infantum JPCM5]
          Length = 332

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRSR-----LYVGDD 156
           ++YAAG T    V CN  +KF  L    R+ G+     +LATGHY R+      ++ GD+
Sbjct: 159 AAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDN 218

Query: 157 GKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM 195
            KRR + + RP    R   DQ+ FL       L    FPLG +
Sbjct: 219 AKRRLVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFPLGHL 261


>gi|148543962|ref|YP_001271332.1| argininosuccinate synthase [Lactobacillus reuteri DSM 20016]
 gi|184153357|ref|YP_001841698.1| argininosuccinate synthase [Lactobacillus reuteri JCM 1112]
 gi|166989392|sp|A5VJH1|ASSY_LACRD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|229889877|sp|B2G6Y6|ASSY_LACRJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|148530996|gb|ABQ82995.1| argininosuccinate synthase [Lactobacillus reuteri DSM 20016]
 gi|183224701|dbj|BAG25218.1| argininosuccinate synthase [Lactobacillus reuteri JCM 1112]
          Length = 410

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG         V DA+
Sbjct: 5   KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           R            D+ E+F    ++P   ++A  E   P V   +R +    L++V  Q 
Sbjct: 65  R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAIAHG 116


>gi|110799347|ref|YP_696888.1| thiamin biosynthesis protein ThiI [Clostridium perfringens ATCC
           13124]
 gi|110673994|gb|ABG82981.1| thiamin biosynthesis protein ThiI [Clostridium perfringens ATCC
           13124]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|18311192|ref|NP_563126.1| hypothetical protein CPE2210 [Clostridium perfringens str. 13]
 gi|18145875|dbj|BAB81916.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|284163472|ref|YP_003401751.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM
           5511]
 gi|284013127|gb|ADB59078.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM
           5511]
          Length = 313

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 44/194 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSSVVAAL     +D +G          A   K       ++ DARRV D 
Sbjct: 21  VLVAFSGGVDSSVVAAL----AHDALG------EDAVACTAKSETLPEAELEDARRVADE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H +  + E   +  +               C  C RT++  ++L   R++G + + 
Sbjct: 71  IGIRHEIVSFSELESDDFVENDDDR---------CYHC-RTMRLGEMLETAREVGVETVC 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G   R   + +                +  ++  PL   D+ KE V
Sbjct: 121 DG------TNADDPGAGHRPGLQAV----------------EELEVHSPLLAHDVTKEEV 158

Query: 201 RDLAREMGLDIADK 214
           R++A   GL +ADK
Sbjct: 159 REIADRYGLSVADK 172


>gi|168213686|ref|ZP_02639311.1| thiamin biosynthesis protein ThiI [Clostridium perfringens CPE str.
           F4969]
 gi|169344240|ref|ZP_02865222.1| thiamin biosynthesis protein ThiI [Clostridium perfringens C str.
           JGS1495]
 gi|182626249|ref|ZP_02954006.1| thiamin biosynthesis protein ThiI [Clostridium perfringens D str.
           JGS1721]
 gi|169297699|gb|EDS79799.1| thiamin biosynthesis protein ThiI [Clostridium perfringens C str.
           JGS1495]
 gi|170714850|gb|EDT27032.1| thiamin biosynthesis protein ThiI [Clostridium perfringens CPE str.
           F4969]
 gi|177908428|gb|EDT70966.1| thiamin biosynthesis protein ThiI [Clostridium perfringens D str.
           JGS1721]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|168215839|ref|ZP_02641464.1| thiamin biosynthesis protein ThiI [Clostridium perfringens NCTC
           8239]
 gi|182381995|gb|EDT79474.1| thiamin biosynthesis protein ThiI [Clostridium perfringens NCTC
           8239]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|168210139|ref|ZP_02635764.1| thiamin biosynthesis protein ThiI [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711808|gb|EDT23990.1| thiamin biosynthesis protein ThiI [Clostridium perfringens B str.
           ATCC 3626]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|168205553|ref|ZP_02631558.1| thiamin biosynthesis protein ThiI [Clostridium perfringens E str.
           JGS1987]
 gi|170662909|gb|EDT15592.1| thiamin biosynthesis protein ThiI [Clostridium perfringens E str.
           JGS1987]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+C 
Sbjct: 3   RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ E     V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|327401200|ref|YP_004342039.1| hypothetical protein Arcve_1319 [Archaeoglobus veneficus SNP6]
 gi|327316708|gb|AEA47324.1| Conserved hypothetical protein CHP00268 [Archaeoglobus veneficus
           SNP6]
          Length = 257

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 22/103 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV +A SGGVDS+ +AAL ++ G + I VT+           K    A +D+ +A+RV +
Sbjct: 15  RVAIAFSGGVDSATLAALCRKWGIEAIAVTV-----------KTDLMAARDLENAKRVAE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
            I + H + +        V VP A       TP  C  C +T+
Sbjct: 64  EIGIEHVIVE--------VAVPDA---VLENTPQRCYYCKKTI 95


>gi|223040559|ref|ZP_03610831.1| NAD+ synthetase [Campylobacter rectus RM3267]
 gi|222878194|gb|EEF13303.1| NAD+ synthetase [Campylobacter rectus RM3267]
          Length = 264

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 49/202 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+VVAAL K  G+D   +   L  ++ +S+R        ++ DA ++C  +
Sbjct: 43  VLGVSGGIDSAVVAALCKCTGFDTHAL---LMPAKHSSER--------NLSDALKLCSDL 91

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAA--GETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            ++H + +         I P   S+ A  GE PLP       ++  +L +  R      L
Sbjct: 92  KITHKIIE---------IQPILESFVAQIGE-PLP------NLRMGNLSARARM----CL 131

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
              +  R + L VG   K  R++              + T    +     P+G++ K  +
Sbjct: 132 LYDYSARVNALVVGTSNKSERMLG-------------YGTIYGDMACALNPIGELFKTEI 178

Query: 201 RDLAREMGLD--IADKSDSQDI 220
            +LARE+G+D  I  K+ S D+
Sbjct: 179 YELARELGIDEKIIAKAPSADL 200


>gi|149133681|gb|ABR21024.1| tRNA methyltransferase [Rhodothermus sp. XMH10]
          Length = 51

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCA 69
          +AMSGGVDSSV AALL   GY+V+G+T++ ++   +  R G    CC+
Sbjct: 1  MAMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCCS 48


>gi|301299185|ref|ZP_07205473.1| argininosuccinate synthase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853213|gb|EFK80809.1| argininosuccinate synthase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 403

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG              
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +  F    ++P    YA  E   P V   +R +    L+ V ++ GA
Sbjct: 56  -----VESIVIDAKHEFAEEYVLPALQGYAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|28210054|ref|NP_780998.1| hypothetical protein CTC00292 [Clostridium tetani E88]
 gi|28202489|gb|AAO34935.1| conserved protein [Clostridium tetani E88]
          Length = 326

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 31/195 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G DVIGV  + +   + S              A R+  
Sbjct: 3   RALAMISGGLDSILAAKLMKDQGIDVIGVCFKSHFFNEES--------------AIRMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGADV 140
            I++   + D+ E+    V  P    Y  G+   PC+DC+   + +S  L   + L AD 
Sbjct: 49  QIDIPLKIVDFSEKHLEIVKNP---KYGYGKNMNPCIDCHSLMMNYSGKL--LKDLEADF 103

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R    +           +++ ++ S +      + LC    P  +M+ + +
Sbjct: 104 IITGEVLNQRPMSQNKSS--------LEIVKNHSGYA-DKILRPLCAKNLPPTEMELKGI 154

Query: 201 RDLAREMGLDIADKS 215
            D  RE  LDI+ +S
Sbjct: 155 VD--REKLLDISGRS 167


>gi|182420268|ref|ZP_02951497.1| tRNA methyl transferase [Clostridium butyricum 5521]
 gi|237666593|ref|ZP_04526578.1| tRNA methyl transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375863|gb|EDT73455.1| tRNA methyl transferase [Clostridium butyricum 5521]
 gi|237657792|gb|EEP55347.1| tRNA methyl transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 329

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS + A L+K  G DVIG+  + Y   +               +A+R+  
Sbjct: 3   RALAMISGGLDSILAAKLIKEQGIDVIGICFRSYFFNEE--------------NAKRMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I +   V D+ +   + V  P    +  G+   PC+DC+   +++S  L   ++  AD 
Sbjct: 49  QIGIPLEVIDFSKEHFDMVKSP---EHGWGKNMNPCIDCHAMMMRYSGEL--LKKFNADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|299783595|gb|ADJ41593.1| Argininosuccinate synthase [Lactobacillus fermentum CECT 5716]
          Length = 429

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +  +A K+KG              
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKKKGLKVGA--------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +E F +   +P   ++A  E   P V   +R +    L+ V ++ GA
Sbjct: 56  -----VKSVVIDAKEEFASEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|169840170|ref|ZP_02873358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [candidate division TM7 single-cell isolate TM7a]
          Length = 48

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 5/45 (11%)

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD 284
           +V+  G++LG HNG++ YTIGQR+G+G+       GEP FVV  D
Sbjct: 1   MVNTQGKVLGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKD 45


>gi|170760015|ref|YP_001785458.1| hypothetical protein CLK_3304 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407004|gb|ACA55415.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 326

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138
              I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S  L   ++  A
Sbjct: 47  TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 102 DFIITGEVLNQR 113


>gi|322804399|emb|CBZ01949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138
              I++   V D+ +     V  P    +  G+   PC+DC+   +K+S  L   ++  A
Sbjct: 47  TKQIDIPLEVVDFSKEHLEMVKSP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 102 DFIITGEVLNQR 113


>gi|170757780|ref|YP_001779756.1| hypothetical protein CLD_0657 [Clostridium botulinum B1 str. Okra]
 gi|169122992|gb|ACA46828.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138
              I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S  L   ++  A
Sbjct: 47  TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 102 DFIITGEVLNQR 113


>gi|148378135|ref|YP_001252676.1| hypothetical protein CBO0129 [Clostridium botulinum A str. ATCC
           3502]
 gi|153930964|ref|YP_001382536.1| hypothetical protein CLB_0165 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937112|ref|YP_001386088.1| hypothetical protein CLC_0177 [Clostridium botulinum A str. Hall]
 gi|148287619|emb|CAL81684.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927008|gb|ABS32508.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933026|gb|ABS38525.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138
              I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S  L   ++  A
Sbjct: 47  TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 102 DFIITGEVLNQR 113


>gi|153938098|ref|YP_001389492.1| hypothetical protein CLI_0184 [Clostridium botulinum F str.
           Langeland]
 gi|152933994|gb|ABS39492.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|295317593|gb|ADF97970.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138
              I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S  L   ++  A
Sbjct: 47  TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 102 DFIITGEVLNQR 113


>gi|168177461|ref|ZP_02612125.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226947352|ref|YP_002802443.1| hypothetical protein CLM_0172 [Clostridium botulinum A2 str. Kyoto]
 gi|182671002|gb|EDT82976.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226844468|gb|ACO87134.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138
              I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S  L   ++  A
Sbjct: 47  TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 102 DFIITGEVLNQR 113


>gi|227515369|ref|ZP_03945418.1| argininosuccinate synthase [Lactobacillus fermentum ATCC 14931]
 gi|227086283|gb|EEI21595.1| argininosuccinate synthase [Lactobacillus fermentum ATCC 14931]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG              
Sbjct: 14  KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +E F +   +P   ++A  E   P V   +R +    L+ V ++ GA
Sbjct: 65  -----VKSVVIDAKEEFASEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGA 119

Query: 139 DVLATG 144
             +A G
Sbjct: 120 TAIAHG 125


>gi|32266697|ref|NP_860729.1| hypothetical protein HH1198 [Helicobacter hepaticus ATCC 51449]
 gi|32262748|gb|AAP77795.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 348

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRV 79
           M  +   SGG DS +   LLK  G DVI +   + + S K           Q        
Sbjct: 1   MLALALFSGGCDSLISMKLLKDQGIDVIALHFNIGFGSNKDKLAYFQNATAQ-------- 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I+V   + D +++F N V+  F   Y  G+   PC+DC+  + F++      Q+GAD
Sbjct: 53  ---IDVKLQILDIQQQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FANAFDYLLQVGAD 106

Query: 140 VLATGHYIRSR 150
            + +G  +  R
Sbjct: 107 FVVSGEVLGQR 117


>gi|187777280|ref|ZP_02993753.1| hypothetical protein CLOSPO_00832 [Clostridium sporogenes ATCC
           15579]
 gi|187774208|gb|EDU38010.1| hypothetical protein CLOSPO_00832 [Clostridium sporogenes ATCC
           15579]
          Length = 333

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79
           R +  +SGG+DS++ A L+K  G +VIG+  + Y  N +                +A R+
Sbjct: 10  RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGA 138
              I++   V D+ ++    V  P    +  G+   PC+DC+   +K+S  L    +  A
Sbjct: 54  TKQIDIPLEVVDFSKKHLEMVKNP---KHGYGKNMNPCIDCHSMMMKYSGEL--LEKFNA 108

Query: 139 DVLATGHYIRSR 150
           D + TG  +  R
Sbjct: 109 DFIITGEVLNQR 120


>gi|126642474|ref|YP_001085458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Acinetobacter baumannii ATCC 17978]
 gi|126388358|gb|ABO12856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Acinetobacter baumannii ATCC 17978]
          Length = 64

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V D
Sbjct: 4  RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60


>gi|168182262|ref|ZP_02616926.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237793447|ref|YP_002860999.1| hypothetical protein CLJ_B0167 [Clostridium botulinum Ba4 str. 657]
 gi|182674625|gb|EDT86586.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229262133|gb|ACQ53166.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 326

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+  
Sbjct: 3   RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK--------------NAERMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S  L   ++  AD 
Sbjct: 49  QIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKRFNADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|319744076|gb|EFV96453.1| argininosuccinate synthase [Streptococcus agalactiae ATCC 13813]
          Length = 396

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHEKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|227891841|ref|ZP_04009646.1| argininosuccinate synthase [Lactobacillus salivarius ATCC 11741]
 gi|227866304|gb|EEJ73725.1| argininosuccinate synthase [Lactobacillus salivarius ATCC 11741]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG              
Sbjct: 11  KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +  F    ++P    +A  E   P V   +R +    L+ V ++ GA
Sbjct: 62  -----VESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 116

Query: 139 DVLATG 144
             +A G
Sbjct: 117 TAIAHG 122


>gi|90961287|ref|YP_535203.1| argininosuccinate synthase [Lactobacillus salivarius UCC118]
 gi|119361283|sp|Q1WV65|ASSY_LACS1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|90820481|gb|ABD99120.1| Argininosuccinate synthase [Lactobacillus salivarius UCC118]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG              
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +  F    ++P    +A  E   P V   +R +    L+ V ++ GA
Sbjct: 56  -----VESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|222153770|ref|YP_002562947.1| argininosuccinate synthase [Streptococcus uberis 0140J]
 gi|254807533|sp|B9DVV9|ASSY_STRU0 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|222114583|emb|CAR43561.1| argininosuccinate synthase [Streptococcus uberis 0140J]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           ++V+A SGG+D+SV  A LK+D +DVI V + +               G+D+ +   +  
Sbjct: 5   KIVLAYSGGLDTSVAIAWLKKD-FDVIAVCMDV-------------GEGKDLQFIHEKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D +E F  A ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  KIGAIESYVIDVKEEFAEAFVLPALQAHAFYEQKYPLVSALSRPLISKKLVDIAHECGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 YIAHG 115


>gi|300214168|gb|ADJ78584.1| Argininosuccinate synthase(Citrulline--aspartate ligase)
           [Lactobacillus salivarius CECT 5713]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +  +A K KG              
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +  F    ++P    +A  E   P V   +R +    L+ V ++ GA
Sbjct: 56  -----VESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|313124829|ref|YP_004035093.1| hypothetical protein Hbor_00410 [Halogeometricum borinquense DSM
           11551]
 gi|312291194|gb|ADQ65654.1| conserved hypothetical protein TIGR00268 [Halogeometricum
           borinquense DSM 11551]
          Length = 302

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 40/192 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL     +D +G      +   A   K      +++ DARRV D 
Sbjct: 31  VLIAFSGGVDSSVVAAL----AHDALG------DDAIACTAKSETLPTEELDDARRVADE 80

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E   N   V              C  C RT++   +    R+ G + + 
Sbjct: 81  IGIRHEIVEFSE-LDNPDFVANDGDR--------CYHC-RTMRLGRMYDAARERGIETVC 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G+  R   R ++     S  L                D+ KE VR 
Sbjct: 131 DG------TNASDPGEGHRPGLRAVEELEVLSPLL--------------THDISKEEVRA 170

Query: 203 LAREMGLDIADK 214
           +A   GL +ADK
Sbjct: 171 IADSYGLSVADK 182


>gi|188589825|ref|YP_001919873.1| argininosuccinate synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500106|gb|ACD53242.1| argininosuccinate synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 20/131 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++ +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+ 
Sbjct: 2   VKALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEE--------------NAKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139
           + I +   V D+ E   + V  P    +  G+   PC+DC+   + +S  L    +  AD
Sbjct: 48  EQIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKL--LEKFNAD 102

Query: 140 VLATGHYIRSR 150
            + TG  +  R
Sbjct: 103 FIITGEVLNQR 113


>gi|187935593|ref|YP_001884686.1| argininosuccinate synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187723746|gb|ACD24967.1| argininosuccinate synthase [Clostridium botulinum B str. Eklund
           17B]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 20/131 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++ +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+ 
Sbjct: 2   VKALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEE--------------NAKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139
           + I +   V D+ E   + V  P    +  G+   PC+DC+   + +S  L    +  AD
Sbjct: 48  EQIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKL--LEKFNAD 102

Query: 140 VLATGHYIRSR 150
            + TG  +  R
Sbjct: 103 FIITGEVLNQR 113


>gi|76799640|ref|ZP_00781753.1| Argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus agalactiae 18RS21]
 gi|76585007|gb|EAO61652.1| Argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus agalactiae 18RS21]
          Length = 226

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|217967878|ref|YP_002353384.1| protein of unknown function DUF814 [Dictyoglomus turgidum DSM 6724]
 gi|217336977|gb|ACK42770.1| protein of unknown function DUF814 [Dictyoglomus turgidum DSM 6724]
          Length = 327

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 22/134 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  R +  +SGG+DS +   L+ +   DVIG+T                    ++  A+R
Sbjct: 2   KKARAISLISGGLDSILATWLILQQNIDVIGITF--------------STPFFNLERAKR 47

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQL 136
            C+ +N+  ++ D  E + + +  P    +  G+   PC+DC+  +  K  +LL   ++ 
Sbjct: 48  ACEFLNIPLHIVDITEEYMDILKNP---RFGYGKNMNPCIDCHAFMVKKAKELL---KEF 101

Query: 137 GADVLATGHYIRSR 150
            A+ + TG  +  R
Sbjct: 102 NAEFIITGEVLGER 115


>gi|15615749|ref|NP_244053.1| argininosuccinate synthase [Bacillus halodurans C-125]
 gi|20137501|sp|Q9K820|ASSY_BACHD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|10175810|dbj|BAB06906.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus
           halodurans C-125]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L   GYDVI V L +               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLSDKGYDVIAVGLDV-------------GEGKDLEFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y  D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 52  KVGAIESYTIDAKKEFAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAQ 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|169839707|ref|ZP_02872895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
          [candidate division TM7 single-cell isolate TM7a]
          Length = 42

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          K  RVV+ MSGGVDSSV A LLK  GYDVIGV +++
Sbjct: 3  KRKRVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKI 38


>gi|76788242|ref|YP_328849.1| argininosuccinate synthase [Streptococcus agalactiae A909]
 gi|77406211|ref|ZP_00783280.1| argininosuccinate synthase [Streptococcus agalactiae H36B]
 gi|119361331|sp|Q3K3Q4|ASSY_STRA1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|76563299|gb|ABA45883.1| argininosuccinate synthase [Streptococcus agalactiae A909]
 gi|77175161|gb|EAO77961.1| argininosuccinate synthase [Streptococcus agalactiae H36B]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|323340536|ref|ZP_08080791.1| argininosuccinate synthase [Lactobacillus ruminis ATCC 25644]
 gi|323092080|gb|EFZ34697.1| argininosuccinate synthase [Lactobacillus ruminis ATCC 25644]
          Length = 402

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 23/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           +VV+A SGG+D+SV  A LK  GYDVI                 +CC     G+D+ + +
Sbjct: 7   KVVLAYSGGLDTSVEIAWLKNKGYDVI-----------------ACCIDVGEGKDLEEVK 49

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +    +  V   V D ++ F     +P    +A  E   P V   +R +    L+ V ++
Sbjct: 50  QKGLAVGAVESIVIDAKKEFAEEYCLPALQGHAYYENKYPLVSALSRPLIVKHLVEVAKK 109

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 110 YGATAIAHG 118


>gi|25010198|ref|NP_734593.1| argininosuccinate synthase [Streptococcus agalactiae NEM316]
 gi|77414560|ref|ZP_00790704.1| argininosuccinate synthase [Streptococcus agalactiae 515]
 gi|30172837|sp|Q8E7N1|ASSY_STRA3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|23094549|emb|CAD45768.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159401|gb|EAO70568.1| argininosuccinate synthase [Streptococcus agalactiae 515]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|77409194|ref|ZP_00785905.1| argininosuccinate synthase [Streptococcus agalactiae COH1]
 gi|77172202|gb|EAO75360.1| argininosuccinate synthase [Streptococcus agalactiae COH1]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|22536310|ref|NP_687161.1| argininosuccinate synthase [Streptococcus agalactiae 2603V/R]
 gi|77412174|ref|ZP_00788496.1| argininosuccinate synthase [Streptococcus agalactiae CJB111]
 gi|30172835|sp|Q8E272|ASSY_STRA5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|22533133|gb|AAM99033.1|AE014197_1 argininosuccinate synthase [Streptococcus agalactiae 2603V/R]
 gi|77161792|gb|EAO72781.1| argininosuccinate synthase [Streptococcus agalactiae CJB111]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|32473865|ref|NP_866859.1| ATP-utilizing enzyme [Rhodopirellula baltica SH 1]
 gi|32444401|emb|CAD74400.1| conserved hypothetical protein-putative ATP-utilizing enzyme
           [Rhodopirellula baltica SH 1]
          Length = 316

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 21/120 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVA SGGVDSSVVAA   R G DV+ VT Q               A   +  ARRV + 
Sbjct: 31  LVVAFSGGVDSSVVAAAAHRTGRDVVAVTAQ-----------SPAVARWQLDWARRVAEQ 79

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++H     +E  R        SSY    +   C  C +T+ +  L  +  Q GA +++
Sbjct: 80  VGITHQFVSTDESDR--------SSYRRNHSDR-CFYCKQTL-YEFLTPIAEQRGATIVS 129


>gi|56964502|ref|YP_176233.1| argininosuccinate synthase [Bacillus clausii KSM-K16]
 gi|68566236|sp|Q5WED8|ASSY_BACSK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56910745|dbj|BAD65272.1| argininosuccinate synthase [Bacillus clausii KSM-K16]
          Length = 403

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L   GYDVI V L +               G+D+ +  ++  
Sbjct: 5   KVVLAYSGGLDTSVAVKWLTDKGYDVIAVGLDV-------------GEGKDLEFVKQKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y  D ++ +  + ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 52  QVGAIQSYTIDAKKEYAESFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|251779527|ref|ZP_04822447.1| argininosuccinate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083842|gb|EES49732.1| argininosuccinate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 330

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 20/131 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++ +  +SGG+DS + A L+K  G +VIG+  + Y   +               +A+R+ 
Sbjct: 2   VKALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEE--------------NAKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139
             I +   V D+ E   + V  P    +  G+   PC+DC+   + +S  L    +  AD
Sbjct: 48  QQIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKL--LEKFNAD 102

Query: 140 VLATGHYIRSR 150
            + TG  +  R
Sbjct: 103 FIITGEVLNQR 113


>gi|289581720|ref|YP_003480186.1| asparagine synthase [Natrialba magadii ATCC 43099]
 gi|289531273|gb|ADD05624.1| asparagine synthase [Natrialba magadii ATCC 43099]
          Length = 317

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 44/194 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSSVVAAL     +D +G      +   A   K       ++ DA RV D 
Sbjct: 59  VLVAFSGGVDSSVVAAL----AHDALG------DDAVACTAKSETLPEAELEDATRVADE 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H +  + E           S          C  C RT++  +++   R LG + + 
Sbjct: 109 IGIRHEIVSFSE---------LESDQFVENDDERCYHC-RTMRLGEMIETARDLGIETVC 158

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G   R   + +                +  ++  PL   D+ K+ V
Sbjct: 159 DG------TNADDPGAGHRPGLQAV----------------EELEIHSPLLAHDIAKDEV 196

Query: 201 RDLAREMGLDIADK 214
           R +A + GL +ADK
Sbjct: 197 RAIADQYGLSVADK 210


>gi|24378832|ref|NP_720787.1| argininosuccinate synthase [Streptococcus mutans UA159]
 gi|29336640|sp|Q8CWZ0|ASSY_STRMU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|24376708|gb|AAN58093.1|AE014881_7 argininosuccinate synthase (citrulline-asparate ligase)
           [Streptococcus mutans UA159]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  Q GA 
Sbjct: 51  KVGAIESYVLDIKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|290581142|ref|YP_003485534.1| argininosuccinate synthase [Streptococcus mutans NN2025]
 gi|254998041|dbj|BAH88642.1| argininosuccinate synthase [Streptococcus mutans NN2025]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  Q GA 
Sbjct: 51  KVGAIESYVLDIKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|255525844|ref|ZP_05392773.1| thiamine biosynthesis protein [Clostridium carboxidivorans P7]
 gi|255510487|gb|EET86798.1| thiamine biosynthesis protein [Clostridium carboxidivorans P7]
          Length = 327

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  MSGG+DS++ A L+K  G +VIG+  +            S   G D  +A R+  
Sbjct: 3   KALAMMSGGLDSTLAAKLMKDQGIEVIGICFK------------SHFFGAD--NAIRMAK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            IN+   V D+ E     V  P    +  G+   PC+DC+   + +S    +  +  AD 
Sbjct: 49  QINMPLEVVDFSEEHFEMVKNP---KHGYGKNMNPCIDCHAMMMNYSG--KMLEKYEADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|146279089|ref|YP_001169248.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557330|gb|ABP71943.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 514

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 12/78 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            V+ MSGGVDS++ AAL K  G+ V+G+TL +  + + ++R                C+ 
Sbjct: 75  AVLGMSGGVDSALTAALFKAAGWRVVGLTLPIDQNPEETER------------GIEACEA 122

Query: 83  INVSHYVFDYEERFRNAV 100
           + + H   D  + +R AV
Sbjct: 123 LRIEHLHLDLSQAYRAAV 140


>gi|313682703|ref|YP_004060441.1| nh(3)-dependent nad(+) synthetase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155563|gb|ADR34241.1| NH(3)-dependent NAD(+) synthetase [Sulfuricurvum kujiense DSM
           16994]
          Length = 266

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 49/207 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV +SGG+DS+VVA L  R  G D++ + +  + S  +S           + DA  +C
Sbjct: 26  KVVVGLSGGIDSAVVAVLAHRAFGDDLLCIKMPSHYSSMSS-----------LDDADELC 74

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            T  +    +  E         P   +Y + + +PL   + +  ++   L  ++ + GA 
Sbjct: 75  GTFGLRSETYSIE---------PMLKAYESSDMSPLRIGNLSARLRMVTLFDISAREGAL 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           VL T +  +S L +G                       + T    L     P+GD+ K  
Sbjct: 126 VLGTSN--KSELMLG-----------------------YGTLHGDLASAINPIGDLYKTE 160

Query: 200 VRDLAREMGL--DIADKSDSQDICFVQ 224
           V +LAR +G+   I DK  S D+   Q
Sbjct: 161 VFELARYLGVPSSIIDKPPSADLWAGQ 187


>gi|207110156|ref|ZP_03244318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Helicobacter pylori HPKX_438_CA4C1]
          Length = 82

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 13/87 (14%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
          RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K        
Sbjct: 7  RLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------- 58

Query: 68 CAGQDVY--DARRVCDTINVSHYVFDY 92
              D+Y  +A++ C+ + +   V D+
Sbjct: 59 ---HDLYIKNAQKACEFLGIPLEVLDF 82


>gi|238063187|ref|ZP_04607896.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
 gi|237884998|gb|EEP73826.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
          Length = 95

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVC 80
           ++ AMSGGVDS+V AA     G+DV GV L L  + + + R G+  CC  +D  DARR  
Sbjct: 1   MLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDARDARRAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           D + +  YV+D  +RF   V+   + S  AG  P P
Sbjct: 60  DVLGIPFYVWDMADRFHADVVTTSSPSTRAGPYPEP 95


>gi|55737770|gb|AAV61412.1| argininosuccinate synthase [Streptococcus thermophilus LMG 18311]
 gi|55739688|gb|AAV63329.1| argininosuccinate synthase [Streptococcus thermophilus CNRZ1066]
          Length = 415

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + N    +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ 
Sbjct: 14  ENNMSKEKVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLE 59

Query: 75  DARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
                  T+  V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +
Sbjct: 60  FIHDKALTVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEI 119

Query: 133 TRQLGADVLATG 144
             + GA  +A G
Sbjct: 120 AHKTGATTIAHG 131


>gi|15902146|ref|NP_357696.1| argininosuccinate synthase [Streptococcus pneumoniae R6]
 gi|15457639|gb|AAK98906.1| Argininosuccinate synthase [Streptococcus pneumoniae R6]
          Length = 415

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73
           +KN    +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ 
Sbjct: 15  EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLD 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
           +   +      V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +
Sbjct: 61  FIHDKALKVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEI 120

Query: 133 TRQLGADVLATG 144
             Q+GA  +A G
Sbjct: 121 AHQIGATTIAHG 132


>gi|182683079|ref|YP_001834826.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           CGSP14]
 gi|182628413|gb|ACB89361.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           CGSP14]
          Length = 156

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73
           +KN    +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ 
Sbjct: 15  EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLD 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
           +   +      V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +
Sbjct: 61  FIHDKALKVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEI 120

Query: 133 TRQLGADVLATG 144
             Q+GA  +A G
Sbjct: 121 AHQIGATTIAHG 132


>gi|242309258|ref|ZP_04808413.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239524299|gb|EEQ64165.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 325

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++K  G DV+ +   +    K  K +            + + 
Sbjct: 1   MKALALFSGGLDSLLAIKIIKDMGIDVLALHFNIGFVGKNDKSEA----------LKEIL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I+V   V D  ++F + V+  FA  Y  G+   PC+DC+  + FS   S+    GA  
Sbjct: 51  AQIDVPLKVIDIRKQFFDEVL--FAPKYGYGKYFNPCIDCHGNM-FSHAFSLLESEGASF 107

Query: 141 LATGHYIRSR 150
           + +G  +  R
Sbjct: 108 VISGEVLGQR 117


>gi|300871373|ref|YP_003786246.1| thiamine biosynthesis protein [Brachyspira pilosicoli 95/1000]
 gi|300689074|gb|ADK31745.1| thiamine biosynthesis protein [Brachyspira pilosicoli 95/1000]
          Length = 346

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + ++ +SGG+DS +V A+LKR+  DV+ V           K +       D   A++
Sbjct: 2   KKAKAILLLSGGLDSMLVGAILKRENIDVLAVRFVTGLEYPVIKNELMNIHYDD--PAKK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +N+       ++++ +  + P    Y  G +  PC+DC+  +       +  + G 
Sbjct: 60  AADFLNIPIRFVSLKDKYIDMFLNP---KYGYGSSINPCLDCH-ILMLKTAKKIMEEEGF 115

Query: 139 DVLATGH 145
           D +ATG 
Sbjct: 116 DFIATGE 122


>gi|223041195|ref|ZP_03611447.1| tRNA methyl transferase [Campylobacter rectus RM3267]
 gi|222877554|gb|EEF12683.1| tRNA methyl transferase [Campylobacter rectus RM3267]
          Length = 328

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK----RKGSCCAGQDVYDA 76
           M+ +V  SGG+DS +   LL   G DV  + + +  S    K    R+ +  AG ++   
Sbjct: 1   MKALVLFSGGLDSMIAIRLLTAQGIDVTAIHIDIGFSGDEKKAEILRRRANEAGAEL--- 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 IN+ +      E  R+ +  P    +  G+   PC+DC+  + F   L++ R  
Sbjct: 58  ----KIINIRN------EYLRDVLFTP---KHGYGKHFNPCIDCHGYM-FKTALAMMRSE 103

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           GA  +ATG  I  R       +RR  M R  +   D+   +      QL
Sbjct: 104 GASFIATGEVIGQRPM----SQRRDAMARVKNAAGDEDDLILRPMSAQL 148


>gi|116628501|ref|YP_821120.1| argininosuccinate synthase [Streptococcus thermophilus LMD-9]
 gi|161611279|ref|YP_140227.2| argininosuccinate synthase [Streptococcus thermophilus LMG 18311]
 gi|161936362|ref|YP_142144.2| argininosuccinate synthase [Streptococcus thermophilus CNRZ1066]
 gi|61211385|sp|Q5LXZ8|ASSY_STRT1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|61211386|sp|Q5M2K2|ASSY_STRT2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|122266904|sp|Q03IP8|ASSY_STRTD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116101778|gb|ABJ66924.1| argininosuccinate synthase [Streptococcus thermophilus LMD-9]
 gi|312279128|gb|ADQ63785.1| Argininosuccinate synthase [Streptococcus thermophilus ND03]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+        
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           T+  V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  TVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|306826065|ref|ZP_07459401.1| argininosuccinate synthase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431781|gb|EFM34761.1| argininosuccinate synthase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|322375115|ref|ZP_08049629.1| argininosuccinate synthase [Streptococcus sp. C300]
 gi|321280615|gb|EFX57654.1| argininosuccinate synthase [Streptococcus sp. C300]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|228477972|ref|ZP_04062583.1| argininosuccinate synthase [Streptococcus salivarius SK126]
 gi|228250152|gb|EEK09405.1| argininosuccinate synthase [Streptococcus salivarius SK126]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+        
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           T+  V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  TVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|315612255|ref|ZP_07887169.1| argininosuccinate synthase [Streptococcus sanguinis ATCC 49296]
 gi|315315648|gb|EFU63686.1| argininosuccinate synthase [Streptococcus sanguinis ATCC 49296]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|293364415|ref|ZP_06611141.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
 gi|307702620|ref|ZP_07639572.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
 gi|291317261|gb|EFE57688.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
 gi|307623736|gb|EFO02721.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|331267207|ref|YP_004326837.1| argininosuccinate synthase [Streptococcus oralis Uo5]
 gi|326683879|emb|CBZ01497.1| argininosuccinate synthase [Streptococcus oralis Uo5]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|312865679|ref|ZP_07725903.1| argininosuccinate synthase [Streptococcus downei F0415]
 gi|311098800|gb|EFQ57020.1| argininosuccinate synthase [Streptococcus downei F0415]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+        
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           T+  +  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 51  TVGAIESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVIAKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|270291925|ref|ZP_06198140.1| argininosuccinate synthase [Streptococcus sp. M143]
 gi|270279453|gb|EFA25295.1| argininosuccinate synthase [Streptococcus sp. M143]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|288553719|ref|YP_003425654.1| argininosuccinate synthase [Bacillus pseudofirmus OF4]
 gi|288544879|gb|ADC48762.1| argininosuccinate synthase [Bacillus pseudofirmus OF4]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV    L   GYDVI V L +               G+D+   +    
Sbjct: 5   KVVLAYSGGLDTSVAIKWLSDKGYDVIAVGLDV-------------GEGKDLDFVKEKAL 51

Query: 82  TINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  S  Y  D ++ +    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 52  KVGASQSYTIDAKKEYAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|322515969|ref|ZP_08068909.1| argininosuccinate synthase [Streptococcus vestibularis ATCC 49124]
 gi|322125568|gb|EFX96903.1| argininosuccinate synthase [Streptococcus vestibularis ATCC 49124]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D  +   
Sbjct: 9   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALT 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA  
Sbjct: 56  VGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGATT 115

Query: 141 LATG 144
           +A G
Sbjct: 116 IAHG 119


>gi|312862464|ref|ZP_07722707.1| argininosuccinate synthase [Streptococcus vestibularis F0396]
 gi|311102107|gb|EFQ60307.1| argininosuccinate synthase [Streptococcus vestibularis F0396]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D  +   
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALT 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA  
Sbjct: 52  VGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|299537867|ref|ZP_07051156.1| argininosuccinate synthase [Lysinibacillus fusiformis ZC1]
 gi|298726846|gb|EFI67432.1| argininosuccinate synthase [Lysinibacillus fusiformis ZC1]
          Length = 397

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARR 78
           + +VV+A SGG+D+SV    LK  G+DVI V L +               G+D+ +   +
Sbjct: 3   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFVKNK 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 +  Y+ D ++ F     +    ++   E   P V   +R +    L+ +  Q+G
Sbjct: 50  ALQVGAIESYMVDAKDEFAEGYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 109

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 110 ADAVAHG 116


>gi|110825739|sp|Q58742|QUEC_METJA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
          Length = 232

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+VV  + K  GY+V  +T   Y  R A+KR        ++  A+++C
Sbjct: 1  MKAITVLSGGLDSTVVTLIAKDLGYEVTAITFN-YGQR-AAKR--------EINSAKKIC 50

Query: 81 DTINVSHYVFD 91
          + + + H V D
Sbjct: 51 EILGIEHIVVD 61


>gi|15669538|ref|NP_248349.1| ExsB [Methanocaldococcus jannaschii DSM 2661]
 gi|1591989|gb|AAB99356.1| ExsB [Methanocaldococcus jannaschii DSM 2661]
          Length = 235

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+VV  + K  GY+V  +T   Y  R A+KR        ++  A+++C
Sbjct: 4  MKAITVLSGGLDSTVVTLIAKDLGYEVTAITFN-YGQR-AAKR--------EINSAKKIC 53

Query: 81 DTINVSHYVFD 91
          + + + H V D
Sbjct: 54 EILGIEHIVVD 64


>gi|150403146|ref|YP_001330440.1| exsB protein [Methanococcus maripaludis C7]
 gi|167016436|sp|A6VIL3|QUEC_METM7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|150034176|gb|ABR66289.1| exsB protein [Methanococcus maripaludis C7]
          Length = 233

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR +  +SGG+DS+V +   K + YD+  VT             G     Q++  A+++ 
Sbjct: 1   MRAICVLSGGLDSAVTSLAAKFENYDITTVTFNY----------GQMALNQEIKSAKKIS 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           + +N  H+V D      N V     S    GE P P
Sbjct: 51  EILNADHHVIDI-----NFVKEFSKSGLNTGEIPEP 81


>gi|156937500|ref|YP_001435296.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566484|gb|ABU81889.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 383

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 37/190 (19%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL---YNSRKASKRK 64
           RL  ++L K     RV++ +SGG DS  +  LLK+ G +V+  T+     Y S +A    
Sbjct: 39  RLKKVELPK-----RVLLGLSGGKDSVALLYLLKKVGTEVVAATVDTVPNYTSLEAE--- 90

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                      A+RV + + V+HY    +E +        A SY       PC  C++  
Sbjct: 91  ----------LAKRVAEELGVTHYTVYAKELYGFT-----ALSYKKLRR-APCSICSKLR 134

Query: 125 KFSDLLSVTRQLGADVLATGH-------YIRSRLYVGD--DGKRRRIMCRPMDLERDQSY 175
           + + L  + R+LG + +ATGH       +  S +  GD    K+ R + RP    R +  
Sbjct: 135 RHA-LELLARRLGIEYIATGHNMDDMASWALSYILRGDFQSLKKVRPVERPKGPARGRVK 193

Query: 176 FLFATTQQQL 185
            LF   ++++
Sbjct: 194 PLFWIGEKEI 203


>gi|206901476|ref|YP_002251205.1| tRNA methyl transferase [Dictyoglomus thermophilum H-6-12]
 gi|206740579|gb|ACI19637.1| tRNA methyl transferase [Dictyoglomus thermophilum H-6-12]
          Length = 327

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 26/136 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDA 76
           K +R +  +SGG+DS +   L+ + G +VIGVT     +N                +   
Sbjct: 2   KKVRAISLISGGLDSILATWLILQQGIEVIGVTFYTPFFN----------------LELP 45

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTR 134
           ++ C+ +N+  +V D  E +   +  P    +  G+   PC+DC+  +  K  +LL    
Sbjct: 46  KKACEFLNIPLHVVDITEEYMAILKNP---RFGYGKNMNPCIDCHTFMVKKAKELLP--- 99

Query: 135 QLGADVLATGHYIRSR 150
           +  AD + TG  +  R
Sbjct: 100 KFDADFIITGEVLGER 115


>gi|153003258|ref|YP_001377583.1| thiamine biosynthesis protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026831|gb|ABS24599.1| thiamine biosynthesis protein [Anaeromyxobacter sp. Fw109-5]
          Length = 351

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQ-DVYD 75
           PK  + +  +SGG+DS++  AL++R G +V  VT    +   +  +RKG    G     +
Sbjct: 2   PKQGKAIAMISGGLDSTLALALVRRQGVEVKAVTFYTGFCITETQRRKGGRADGAVPRNE 61

Query: 76  ARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           A R    + V   YV      + + ++ P    Y  G    PCVDC R         +  
Sbjct: 62  ALRAAADLEVDIEYVDISGSEYLDMLVHP---KYGYGANANPCVDC-RVFMMRKAKEIME 117

Query: 135 QLGADVLATGHYIRSR 150
             GAD + TG  +  R
Sbjct: 118 AEGADFIFTGEVLGQR 133


>gi|294501526|ref|YP_003565226.1| argininosuccinate synthase [Bacillus megaterium QM B1551]
 gi|295706874|ref|YP_003599949.1| argininosuccinate synthase [Bacillus megaterium DSM 319]
 gi|294351463|gb|ADE71792.1| argininosuccinate synthase [Bacillus megaterium QM B1551]
 gi|294804533|gb|ADF41599.1| argininosuccinate synthase [Bacillus megaterium DSM 319]
          Length = 402

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 26/134 (19%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQD 72
           NPK   VV+A SGG+D+SV    L+  GYDV+                 +CC     G+D
Sbjct: 3   NPK---VVLAYSGGLDTSVAIKWLQEKGYDVV-----------------ACCLDVGEGKD 42

Query: 73  VYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLL 130
           +   +    T+  VS YV D +E + N   +    ++   E   P V   +R +    L+
Sbjct: 43  LKFVKEKALTVGAVSSYVIDAKEEYANTFALAALQAHTLYEGKYPLVSALSRPLIAKKLV 102

Query: 131 SVTRQLGADVLATG 144
            V  Q  A  +A G
Sbjct: 103 EVAEQENAVAVAHG 116


>gi|126652180|ref|ZP_01724362.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. B14905]
 gi|126591088|gb|EAZ85199.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. B14905]
          Length = 397

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARR 78
           + +VV+A SGG+D+SV    LK  G+DVI V L +               G+D+ +   +
Sbjct: 3   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFVKNK 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 +  Y+ D ++ F     +    ++   E   P V   +R +    L+ +  Q+G
Sbjct: 50  ALQVGAIESYMVDAKDEFAENYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 109

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 110 ADAVAHG 116


>gi|313617895|gb|EFR90082.1| argininosuccinate synthase [Listeria innocua FSL S4-378]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 8   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLXXIK 50

Query: 78  RVCDTINVS-HYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 51  EKAITVGASASYTIDAKEEFAENFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 109

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 110 QEGASAIAHG 119


>gi|307596131|ref|YP_003902448.1| NAD+ synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307551332|gb|ADN51397.1| NAD+ synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 289

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 47/204 (23%)

Query: 24  VVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDSSV A LL K  G D VIG+ L                  +D+ DA+ V +
Sbjct: 38  VIGLSGGVDSSVTAYLLVKALGRDNVIGLILPY-----------KTTPPEDIRDAKYVAE 86

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ + +Y  D   R RNA    FA S       +P  D +  +   +LL   R      +
Sbjct: 87  TLGIKYYYIDI-GRIRNA----FAES-------IPGFDESDKIAVGNLLPRIR------M 128

Query: 142 ATGHYIRSRL--YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
              +Y  +R    V   G +  ++              F        D+  P+GD+ K  
Sbjct: 129 TLLYYFANRFNKVVAGTGDKSELLIG-----------YFTKYGDGGVDI-LPIGDLYKTQ 176

Query: 200 VRDLAREMGL--DIADKSDSQDIC 221
           VR L + +GL  +IA K  S  + 
Sbjct: 177 VRYLGKYLGLPDNIAFKPSSPRLW 200


>gi|296127467|ref|YP_003634719.1| thiamine biosynthesis protein [Brachyspira murdochii DSM 12563]
 gi|296019283|gb|ADG72520.1| thiamine biosynthesis protein [Brachyspira murdochii DSM 12563]
          Length = 352

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + ++ +SGG+DS +V A+LKR+  DV+   L+     + S  K       +   A++
Sbjct: 3   KKAKAILLLSGGLDSMLVGAILKRENIDVLA--LRFVTGLEYSVIKEELLNIYNEDPAKK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +N+       ++ + +  + P    Y  G    PC+DC+  +       +  + G 
Sbjct: 61  AADFLNIPIRFVSLKDVYLDMFLNP---KYGYGSAINPCLDCH-ILMLKTAKKIMEEEGF 116

Query: 139 DVLATGH 145
           D +ATG 
Sbjct: 117 DFIATGE 123


>gi|169828875|ref|YP_001699033.1| argininosuccinate synthase [Lysinibacillus sphaericus C3-41]
 gi|168993363|gb|ACA40903.1| Argininosuccinate synthase [Lysinibacillus sphaericus C3-41]
          Length = 403

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARR 78
           + +VV+A SGG+D+SV    LK  G+DVI V L +               G+D+ +   +
Sbjct: 9   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFVKNK 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 +  Y+ D ++ F     +    ++   E   P V   +R +    L+ +  Q+G
Sbjct: 56  ALQVGAIESYMVDAKDEFAENYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 115

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 116 ADAVAHG 122


>gi|45357789|ref|NP_987346.1| ExsB family transcriptional regulator [Methanococcus maripaludis
          S2]
 gi|74555941|sp|Q6M0P3|QUEC_METMP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|45047349|emb|CAF29782.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+V +   K   YD+  VT             G     Q++  A+++ 
Sbjct: 1  MKAICVLSGGLDSAVTSMFAKSKNYDISTVTFNY----------GQMALNQEIKSAKKIS 50

Query: 81 DTINVSHYVFD 91
          D +N  H+V D
Sbjct: 51 DILNADHHVID 61


>gi|284044933|ref|YP_003395273.1| NAD+ synthetase [Conexibacter woesei DSM 14684]
 gi|283949154|gb|ADB51898.1| NAD+ synthetase [Conexibacter woesei DSM 14684]
          Length = 587

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 12/133 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ +SGGVDS++VA  +  D     GV + +  S  +S+   +        DAR++ D
Sbjct: 326 RVVLGLSGGVDSALVAC-VAVDALGPDGVAVAVMPSPYSSQETQA--------DARQLAD 376

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  Y F+ +   R A     A ++A  +  L   +    ++ + L++++ + G  VL
Sbjct: 377 NLGVERYEFNIQPAMR-AYASTLADTFAGRKPDLTEENLQARIRGNLLMALSNKFGWLVL 435

Query: 142 ATGHYIRSRLYVG 154
           ATG+  +S + VG
Sbjct: 436 ATGN--KSEMSVG 446


>gi|298501904|ref|YP_003723844.1| argininosuccinate synthase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237499|gb|ADI68630.1| argininosuccinate synthase [Streptococcus pneumoniae TCH8431/19A]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73
           +KN    +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ 
Sbjct: 13  EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLD 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
           +   +      V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +
Sbjct: 59  FIHDKALKVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEI 118

Query: 133 TRQLGADVLATG 144
             Q GA  +A G
Sbjct: 119 AHQTGATTIAHG 130


>gi|152990536|ref|YP_001356258.1| ExsB family transcriptional regulator [Nitratiruptor sp. SB155-2]
 gi|189038929|sp|A6Q342|QUEC_NITSB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|151422397|dbj|BAF69901.1| transcriptional regulator, ExsB family [Nitratiruptor sp. SB155-2]
          Length = 220

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 24/197 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ VV +SGG+DSS+ A + K+DGY++I V    Y  R   K         ++   R + 
Sbjct: 1   MKAVVILSGGMDSSITAYMAKKDGYEIIAVHFN-YGQRTEQK---------ELEAFRAIA 50

Query: 81  DTINVSHYVFD---YEERFRNAVI---VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             +N   Y  D   +E+   +A+I   +           P+  V     +  S   ++  
Sbjct: 51  GELNAKTYEIDLPFFEQIGASALIDTNIAIPKQGIEPGIPVTYVPFRNGIFLSVAAAIAE 110

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GAD +  G        V ++       CR   +++ +S     T  +    ++ PL  
Sbjct: 111 KEGADSIYIG--------VVEEDSSGYPDCREDFIQKMESAINAGTKPETDIKIKTPLIH 162

Query: 195 MKKESVRDLAREMGLDI 211
           ++KE +  L   +G+ +
Sbjct: 163 LRKEDIVQLGLSLGVPL 179


>gi|134299514|ref|YP_001113010.1| NAD+ synthetase [Desulfotomaculum reducens MI-1]
 gi|134052214|gb|ABO50185.1| NH(3)-dependent NAD(+) synthetase [Desulfotomaculum reducens MI-1]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 56/211 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV +SGG+DSS VAAL KR   D V+GV +  Y++             +D  DA+ +  
Sbjct: 24  AVVGLSGGIDSSCVAALCKRAFPDNVLGVIMPCYSN------------PEDAADAKLLAK 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T++V +   + +E F   +       Y      L  V+    ++ + L   + +    V+
Sbjct: 72  TLSVPYEEIELDEPFDWFIQRLTGQDYDIHSCDLSIVNIKPRLRMTTLYYYSNRHNYLVV 131

Query: 142 AT--------GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            T        GHY +     GD G                             D+  PL 
Sbjct: 132 GTTNKAEMVVGHYTK----YGDGG----------------------------ADI-LPLA 158

Query: 194 DMKKESVRDLAREMGLD--IADKSDSQDICF 222
           ++ K  VR LA+E+G+   I DK+ S  + F
Sbjct: 159 NLAKSEVRALAKELGIPQRIIDKAPSAGLWF 189


>gi|322374153|ref|ZP_08048687.1| argininosuccinate synthase [Streptococcus sp. C150]
 gi|321277119|gb|EFX54190.1| argininosuccinate synthase [Streptococcus sp. C150]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+        
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           T+  +  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  TVGAIESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|146319671|ref|YP_001199383.1| argininosuccinate synthase [Streptococcus suis 05ZYH33]
 gi|145690477|gb|ABP90983.1| argininosuccinate synthase (citrulline-asparate ligase)
           [Streptococcus suis 05ZYH33]
 gi|292559287|gb|ADE32288.1| argininosuccinate synthase [Streptococcus suis GZ1]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 14/124 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G     + ++D  +   
Sbjct: 15  KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALS 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +  +V D +E F    ++P   ++A  E   P V   +R +    L+ +  + GA  
Sbjct: 62  IGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGATT 121

Query: 141 LATG 144
           +A G
Sbjct: 122 IAHG 125


>gi|91203861|emb|CAJ71514.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 340

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS++   +++  G +VI +       R  S   GSC       +A +V +
Sbjct: 3   KALALLSGGLDSTLAIRVIQEQGIEVIALNFVTVFCRCTS--HGSC-----KLEAVKVSE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +   V +  +RF   V  P    +  G+   PC+DC   + F       R++GAD +
Sbjct: 56  KFGIPIKVINTTDRFLEIVKKP---KHGYGKHMNPCIDCRINI-FHAAGDYMREIGADFI 111

Query: 142 ATGHYIRSR 150
            TG  +  R
Sbjct: 112 ITGEVLGQR 120


>gi|148985461|ref|ZP_01818666.1| argininosuccinate synthase [Streptococcus pneumoniae SP3-BS71]
 gi|147922419|gb|EDK73539.1| argininosuccinate synthase [Streptococcus pneumoniae SP3-BS71]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73
           +KN    +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ 
Sbjct: 13  EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLD 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
           +   +      V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +
Sbjct: 59  FIHDKALKVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEI 118

Query: 133 TRQLGADVLATG 144
             Q GA  +A G
Sbjct: 119 AHQTGATTIAHG 130


>gi|183601736|ref|ZP_02963106.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683732|ref|YP_002470115.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190766|ref|YP_002968160.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196172|ref|YP_002969727.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219342|gb|EDT89983.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621382|gb|ACL29539.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249158|gb|ACS46098.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250726|gb|ACS47665.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178502|gb|ADC85748.1| Argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793755|gb|ADG33290.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 412

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAG 70
           DKN    R+V+A SGG+D+SV    LK R G DV+ V+L   Q   S +  K +   C  
Sbjct: 3   DKN----RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGESLETIKERALACGA 58

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDL 129
                         V  Y+ D  + F N   +    + A  E   P V   +R +    L
Sbjct: 59  --------------VEAYIVDARDEFANEYCMQALKANAMYEGVYPLVSAISRPLITKHL 104

Query: 130 LSVTRQLGADVLATG 144
           +    Q GAD +A G
Sbjct: 105 VRAAHQFGADTIAHG 119


>gi|237751996|ref|ZP_04582476.1| tRNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376563|gb|EEO26654.1| tRNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++K  G DV+ + L +    K  K +            R+  
Sbjct: 1   MKALALFSGGLDSLLAIKIIKDMGVDVLALHLNIGFGAKRDKSE----------ILRQRL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I V   + D  ++F + V+  F   +  G+   PC+DC+  + FS  L +    GA  
Sbjct: 51  DQIGVELKIVDIRKQFFDDVL--FKPKFGYGKYFNPCIDCHANM-FSHALGMLESEGASF 107

Query: 141 LATGHYIRSR 150
           + +G  +  R
Sbjct: 108 VISGEVLGQR 117


>gi|229180948|ref|ZP_04308283.1| Argininosuccinate synthase [Bacillus cereus 172560W]
 gi|228602505|gb|EEK59991.1| Argininosuccinate synthase [Bacillus cereus 172560W]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDAR 77
           K  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   
Sbjct: 12  KKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           +      +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|229198789|ref|ZP_04325485.1| Argininosuccinate synthase [Bacillus cereus m1293]
 gi|228584722|gb|EEK42844.1| Argininosuccinate synthase [Bacillus cereus m1293]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDAR 77
           K  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   
Sbjct: 12  KKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           +      +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|146321866|ref|YP_001201577.1| argininosuccinate synthase [Streptococcus suis 98HAH33]
 gi|253752668|ref|YP_003025809.1| argininosuccinate synthase [Streptococcus suis SC84]
 gi|253754494|ref|YP_003027635.1| argininosuccinate synthase [Streptococcus suis P1/7]
 gi|253756427|ref|YP_003029567.1| argininosuccinate synthase [Streptococcus suis BM407]
 gi|166221024|sp|A4W488|ASSY_STRS2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|172045627|sp|A4VXZ4|ASSY_STRSY RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145692672|gb|ABP93177.1| argininosuccinate synthase (citrulline-asparate ligase)
           [Streptococcus suis 98HAH33]
 gi|251816957|emb|CAZ52606.1| argininosuccinate synthase [Streptococcus suis SC84]
 gi|251818891|emb|CAZ56734.1| argininosuccinate synthase [Streptococcus suis BM407]
 gi|251820740|emb|CAR47502.1| argininosuccinate synthase [Streptococcus suis P1/7]
 gi|319759085|gb|ADV71027.1| argininosuccinate synthase [Streptococcus suis JS14]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 14/124 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G     + ++D  +   
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALS 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +  +V D +E F    ++P   ++A  E   P V   +R +    L+ +  + GA  
Sbjct: 52  IGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|304321760|ref|YP_003855403.1| argininosuccinate synthase [Parvularcula bermudensis HTCC2503]
 gi|303300662|gb|ADM10261.1| argininosuccinate synthase [Parvularcula bermudensis HTCC2503]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S     LK+ GY+VI   +       A        A        R  +
Sbjct: 4   KVVLAFSGGLDTSYCVLALKKAGYEVITYFVDTAGPGSAEASPEEVAA--------RAKE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              V H+  +  +R  + ++VP   A  +  G  PL C D  R +     + + + +GA 
Sbjct: 56  LGAVDHHNIEASQRLWDGIVVPLIQAGEWRQGRYPLLCAD--RYLIVEAGIELAKSVGAG 113

Query: 140 VLATG 144
            +A G
Sbjct: 114 AIAHG 118


>gi|261403835|ref|YP_003248059.1| exsB protein [Methanocaldococcus vulcanius M7]
 gi|261370828|gb|ACX73577.1| exsB protein [Methanocaldococcus vulcanius M7]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 16/102 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+V   + K  GY++  +T      +KA KR        ++  A+++C
Sbjct: 1   MKAITVLSGGLDSTVATLIAKDRGYEMTAITFNY--GQKAVKR--------EINSAKKIC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           + + + H V D         +  F  S    E  +P +  N 
Sbjct: 51  EILGIKHIVVDL------PFVKQFGKSSLITEKEIPTLKMNE 86


>gi|156937428|ref|YP_001435224.1| argininosuccinate synthase [Ignicoccus hospitalis KIN4/I]
 gi|172044465|sp|A8AA65|ASSY_IGNH4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|156566412|gb|ABU81817.1| argininosuccinate synthase [Ignicoccus hospitalis KIN4/I]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           ++V+A SGG+D+SV  A LK   G +VI VT+   Q  + ++  +R     A +      
Sbjct: 3   KIVLAYSGGLDTSVAVAWLKEKFGAEVITVTVDVGQKEDFKEIEERAYKAGASK------ 56

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                    HY+ D +E F N  I P   + A  E   P      R +    ++ V R+ 
Sbjct: 57  ---------HYLIDAKEEFVNKYIKPAIIANALYEEVYPLGTALARPLIGEKVIEVARKE 107

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 108 GADAVAHG 115


>gi|223933968|ref|ZP_03625926.1| Argininosuccinate synthase [Streptococcus suis 89/1591]
 gi|330833642|ref|YP_004402467.1| argininosuccinate synthase [Streptococcus suis ST3]
 gi|223897360|gb|EEF63763.1| Argininosuccinate synthase [Streptococcus suis 89/1591]
 gi|329307865|gb|AEB82281.1| Argininosuccinate synthase [Streptococcus suis ST3]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           ++++A SGG+D+SV  A LK+D YDVI V + +               G+D+ +   +  
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D +E F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  SIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|288818608|ref|YP_003432956.1| thiamine biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|288788008|dbj|BAI69755.1| thiamine biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|308752199|gb|ADO45682.1| Queuosine synthesis [Hydrogenobacter thermophilus TK-6]
          Length = 347

 Score = 43.9 bits (102), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +R V  +SGG+DSS+   LLK  G ++       G  +  +  R   KR+      Q V 
Sbjct: 4   VRAVALLSGGLDSSLAVHLLKDQGVEIKALYFYTGFCITEHKRRLGLKRED---GQQYVN 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            A R    + V   V D  E + N V+ P    Y  G+   PC+DC
Sbjct: 61  PAFRAAAQLKVPIEVVDVSEEYFNIVLNP---KYGYGKNVNPCIDC 103


>gi|304392676|ref|ZP_07374616.1| argininosuccinate synthase [Ahrensia sp. R2A130]
 gi|303295306|gb|EFL89666.1| argininosuccinate synthase [Ahrensia sp. R2A130]
          Length = 417

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L  S            G+++ +A+R  
Sbjct: 11  KVVLAYSGGLDTSIILKWLQTEYGAEVVTFTADLGQS--------EIEGGKELEEAKRKA 62

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + ++  Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 63  ENLGITEIYIEDVREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIARETGA 122

Query: 139 DVLATG 144
           D +A G
Sbjct: 123 DAIAHG 128


>gi|169840824|ref|ZP_02873937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [candidate division TM7 single-cell isolate TM7a]
          Length = 65

 Score = 43.5 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 144 GHYIR--SRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           GHY R        ++GKR +  M R +D  +DQ+YFL   +Q+QL  + FPLG+  K  +
Sbjct: 5   GHYARIIHEEVEDENGKRIKSTMLRGVDDNKDQTYFLCQLSQEQLEKVLFPLGEYTKPQI 64

Query: 201 R 201
           R
Sbjct: 65  R 65


>gi|289191719|ref|YP_003457660.1| exsB protein [Methanocaldococcus sp. FS406-22]
 gi|288938169|gb|ADC68924.1| exsB protein [Methanocaldococcus sp. FS406-22]
          Length = 232

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+V   + K  GY+V  +T   Y  R A+KR        ++  A+++C
Sbjct: 1  MKAITVLSGGLDSTVATLIAKDLGYEVTAITFN-YGQR-AAKR--------EINSAKKIC 50

Query: 81 DTINVSHYVFD 91
          + + + H V D
Sbjct: 51 EILGIEHIVVD 61


>gi|134046496|ref|YP_001097981.1| exsB protein [Methanococcus maripaludis C5]
 gi|167016435|sp|A4FZY3|QUEC_METM5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|132664121|gb|ABO35767.1| exsB protein [Methanococcus maripaludis C5]
          Length = 233

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+V + + K + YD+  VT             G     Q++  A ++ 
Sbjct: 1  MKAICVLSGGLDSAVTSLVAKSENYDITTVTFNY----------GQMALNQEIKSAEKIS 50

Query: 81 DTINVSHYVFD 91
          + +N  H+V D
Sbjct: 51 EILNADHHVID 61


>gi|46191095|ref|ZP_00120525.2| COG0137: Argininosuccinate synthase [Bifidobacterium longum DJO10A]
 gi|189439673|ref|YP_001954754.1| argininosuccinate synthase [Bifidobacterium longum DJO10A]
 gi|239622229|ref|ZP_04665260.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133074|ref|YP_004000413.1| argg [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481820|ref|ZP_07940848.1| arginosuccinate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688764|ref|YP_004208498.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           157F]
 gi|229889862|sp|B3DSY7|ASSY_BIFLD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189428108|gb|ACD98256.1| Argininosuccinate synthase [Bifidobacterium longum DJO10A]
 gi|239514226|gb|EEQ54093.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517163|emb|CBK70779.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           F8]
 gi|311774067|gb|ADQ03555.1| ArgG [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916757|gb|EFV38151.1| arginosuccinate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460100|dbj|BAJ70720.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75
           + R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C       
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                    V  YV D  + F N   +    + A  E   P V   +R +    L+    
Sbjct: 59  ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109

Query: 135 QLGADVLATG 144
           Q GAD ++ G
Sbjct: 110 QFGADTISHG 119


>gi|259503176|ref|ZP_05746078.1| argininosuccinate synthase [Lactobacillus antri DSM 16041]
 gi|259168833|gb|EEW53328.1| argininosuccinate synthase [Lactobacillus antri DSM 16041]
          Length = 414

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A L   GYDVI   + +      +A ++K +        V DA+
Sbjct: 10  KIVLAYSGGLDTSVAIAWLMNKGYDVIACCIDVGEGLDLEAIQQKAAAIGAWKSVVIDAK 69

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           R            D+ E+F    ++P    +A  E   P V   +R +    L+ V ++ 
Sbjct: 70  R------------DFAEQF----VLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEY 113

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 114 GATAIAHG 121


>gi|227546226|ref|ZP_03976275.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|296453804|ref|YP_003660947.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|322690756|ref|YP_004220326.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|227213207|gb|EEI81079.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|296183235|gb|ADH00117.1| Argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|320455612|dbj|BAJ66234.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75
           + R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C       
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                    V  YV D  + F N   +    + A  E   P V   +R +    L+    
Sbjct: 59  ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109

Query: 135 QLGADVLATG 144
           Q GAD ++ G
Sbjct: 110 QFGADTISHG 119


>gi|225619893|ref|YP_002721150.1| thiamine biosynthesis protein [Brachyspira hyodysenteriae WA1]
 gi|225214712|gb|ACN83446.1| thiamine biosynthesis protein [Brachyspira hyodysenteriae WA1]
          Length = 356

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + ++ +SGG+DS +V A+LKR+  DV+ +           K +      +D   A++
Sbjct: 4   KKAKAILLLSGGLDSMLVGAILKRENIDVLALRFVTGLEYAVIKEELLEIYSED--PAKK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +N+       ++ + +  + P    Y  G    PC+DC+  +       +  + G 
Sbjct: 62  AADFLNIPIRFVSLKDVYLDMFLNP---KYGYGSAINPCLDCH-ILMLKTAKKIMEEEGF 117

Query: 139 DVLATGH 145
           D +ATG 
Sbjct: 118 DFIATGE 124


>gi|213692741|ref|YP_002323327.1| Argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254807508|sp|B7GTP0|ASSY_BIFLI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|213524202|gb|ACJ52949.1| Argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458899|dbj|BAJ69520.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75
           + R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C       
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                    V  YV D  + F N   +    + A  E   P V   +R +    L+    
Sbjct: 59  ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109

Query: 135 QLGADVLATG 144
           Q GAD ++ G
Sbjct: 110 QFGADTISHG 119


>gi|23465627|ref|NP_696230.1| argininosuccinate synthase [Bifidobacterium longum NCC2705]
 gi|30172866|sp|Q8G5F2|ASSY_BIFLO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|23326299|gb|AAN24866.1| argininosuccinate synthase [Bifidobacterium longum NCC2705]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75
           + R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C       
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                    V  YV D  + F N   +    + A  E   P V   +R +    L+    
Sbjct: 59  ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109

Query: 135 QLGADVLATG 144
           Q GAD ++ G
Sbjct: 110 QFGADTISHG 119


>gi|116515666|ref|YP_815608.1| argininosuccinate synthase [Streptococcus pneumoniae D39]
 gi|237649603|ref|ZP_04523855.1| argininosuccinate synthase [Streptococcus pneumoniae CCRI 1974]
 gi|237821347|ref|ZP_04597192.1| argininosuccinate synthase [Streptococcus pneumoniae CCRI 1974M2]
 gi|34921753|sp|Q8DRI5|ASSY_STRR6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|122279483|sp|Q04MW7|ASSY_STRP2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116076242|gb|ABJ53962.1| argininosuccinate synthase [Streptococcus pneumoniae D39]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
            +A G   +     G+D  R  +    +DL
Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135


>gi|255030613|ref|ZP_05302564.1| argininosuccinate synthase [Listeria monocytogenes LO28]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 7   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 49

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 50  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 108

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 109 QEGASAIAHG 118


>gi|325841863|ref|ZP_08167494.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1]
 gi|325489818|gb|EGC92171.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1]
          Length = 511

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 42/195 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDSSVVAAL+ R     IG  L          RKG   +  + +D +     
Sbjct: 219 VLCALSGGVDSSVVAALIHR----AIGDQLTCMFVDHGLLRKGEAESVVETFDGK----- 269

Query: 83  INVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138
            N++    D +ERF N    V  P       G   + C D   + K  D+  + +  L  
Sbjct: 270 FNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYCFD-EESAKLKDMKFLAQGTLYT 328

Query: 139 DVLATG----HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           D++ +G      I+S   VG           P D+E                +L  PL  
Sbjct: 329 DIIESGTDTAQTIKSHHNVGG---------LPEDME---------------FELIEPLNT 364

Query: 195 MKKESVRDLAREMGL 209
           + K+ VR L  E+GL
Sbjct: 365 LFKDEVRQLGLELGL 379


>gi|85859756|ref|YP_461958.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase / fibronectin/fibrinogen-binding
           protein [Syntrophus aciditrophicus SB]
 gi|85722847|gb|ABC77790.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase / fibronectin/fibrinogen-binding
           protein [Syntrophus aciditrophicus SB]
          Length = 333

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 22/129 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +   SGG+DS +   +++  G +V+G+T +   ++SRKA              DA R   
Sbjct: 14  IAVFSGGLDSIIAVKVIQDQGIEVVGLTFETPFFSSRKAR-------------DAAR--- 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +   V D  E     ++ P    Y  G+   PC+DC+ T+          +LGAD +
Sbjct: 58  KIGLPLKVLDITEEHLKMLMNP---RYGYGKNLNPCIDCH-TLMLKIAGDKMSELGADFI 113

Query: 142 ATGHYIRSR 150
            TG  +  R
Sbjct: 114 FTGEVLGQR 122


>gi|293374623|ref|ZP_06620939.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Turicibacter sanguinis PC909]
 gi|292646773|gb|EFF64767.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Turicibacter sanguinis PC909]
          Length = 511

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 42/195 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDSSVVAAL+ R     IG  L          RKG   +  + +D +     
Sbjct: 219 VLCALSGGVDSSVVAALIHR----AIGDQLTCMFVDHGLLRKGEAESVVETFDGK----- 269

Query: 83  INVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138
            N++    D +ERF N    V  P       G   + C D   + K  D+  + +  L  
Sbjct: 270 FNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYCFD-EESAKLKDMKFLAQGTLYT 328

Query: 139 DVLATG----HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           D++ +G      I+S   VG           P D+E                +L  PL  
Sbjct: 329 DIIESGTDTAQTIKSHHNVGG---------LPEDME---------------FELIEPLNT 364

Query: 195 MKKESVRDLAREMGL 209
           + K+ VR L  E+GL
Sbjct: 365 LFKDEVRQLGLELGL 379


>gi|313607645|gb|EFR83912.1| argininosuccinate synthase [Listeria monocytogenes FSL F2-208]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 8   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 50

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 51  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 109

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 110 QEGASAIAHG 119


>gi|148996520|ref|ZP_01824238.1| argininosuccinate synthase [Streptococcus pneumoniae SP11-BS70]
 gi|168577052|ref|ZP_02722881.1| argininosuccinate synthase [Streptococcus pneumoniae MLV-016]
 gi|307066786|ref|YP_003875752.1| argininosuccinate synthase [Streptococcus pneumoniae AP200]
 gi|147757095|gb|EDK64134.1| argininosuccinate synthase [Streptococcus pneumoniae SP11-BS70]
 gi|183577310|gb|EDT97838.1| argininosuccinate synthase [Streptococcus pneumoniae MLV-016]
 gi|306408323|gb|ADM83750.1| Argininosuccinate synthase [Streptococcus pneumoniae AP200]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|306834436|ref|ZP_07467550.1| argininosuccinate synthase [Streptococcus bovis ATCC 700338]
 gi|325979276|ref|YP_004288992.1| argininosuccinate synthase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304423422|gb|EFM26574.1| argininosuccinate synthase [Streptococcus bovis ATCC 700338]
 gi|325179204|emb|CBZ49248.1| argG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    L +D YDV+ V + +               G+D+ +   +  
Sbjct: 25  KVILAYSGGLDTSVAITWLMKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 71  KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 130

Query: 140 VLATG 144
            +A G
Sbjct: 131 TIAHG 135


>gi|229076132|ref|ZP_04209100.1| Argininosuccinate synthase [Bacillus cereus Rock4-18]
 gi|229105258|ref|ZP_04235907.1| Argininosuccinate synthase [Bacillus cereus Rock3-28]
 gi|228678184|gb|EEL32412.1| Argininosuccinate synthase [Bacillus cereus Rock3-28]
 gi|228706995|gb|EEL59200.1| Argininosuccinate synthase [Bacillus cereus Rock4-18]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|229141366|ref|ZP_04269904.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST26]
 gi|228642147|gb|EEK98440.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST26]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMMDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|254831669|ref|ZP_05236324.1| argininosuccinate synthase [Listeria monocytogenes 10403S]
 gi|255027648|ref|ZP_05299634.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-003]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|168487061|ref|ZP_02711569.1| argininosuccinate synthase [Streptococcus pneumoniae CDC1087-00]
 gi|183570007|gb|EDT90535.1| argininosuccinate synthase [Streptococcus pneumoniae CDC1087-00]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
            +A G   +     G+D  R  +    +DL
Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135


>gi|218899784|ref|YP_002448195.1| argininosuccinate synthase [Bacillus cereus G9842]
 gi|226729217|sp|B7IK29|ASSY_BACC2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|218542345|gb|ACK94739.1| argininosuccinate synthase [Bacillus cereus G9842]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YDVI + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|169833085|ref|YP_001693635.1| argininosuccinate synthase [Streptococcus pneumoniae Hungary19A-6]
 gi|229889897|sp|B1I814|ASSY_STRPI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|168995587|gb|ACA36199.1| argininosuccinate synthase [Streptococcus pneumoniae Hungary19A-6]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
            +A G   +     G+D  R  +    +DL
Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135


>gi|16804129|ref|NP_465614.1| argininosuccinate synthase [Listeria monocytogenes EGD-e]
 gi|224501112|ref|ZP_03669419.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-561]
 gi|254827022|ref|ZP_05231709.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165]
 gi|21263427|sp|Q8Y5H2|ASSY_LISMO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|16411560|emb|CAD00168.1| argG [Listeria monocytogenes EGD-e]
 gi|258599404|gb|EEW12729.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|324328524|gb|ADY23784.1| argininosuccinate synthase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|229032281|ref|ZP_04188254.1| Argininosuccinate synthase [Bacillus cereus AH1271]
 gi|228729061|gb|EEL80064.1| Argininosuccinate synthase [Bacillus cereus AH1271]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|217962117|ref|YP_002340687.1| argininosuccinate synthase [Bacillus cereus AH187]
 gi|226729215|sp|B7HRS7|ASSY_BACC7 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|217066572|gb|ACJ80822.1| argininosuccinate synthase [Bacillus cereus AH187]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|116873527|ref|YP_850308.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466515|sp|A0AKJ7|ASSY_LISW6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116742405|emb|CAK21529.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|224418410|ref|ZP_03656416.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253827728|ref|ZP_04870613.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313141940|ref|ZP_07804133.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253511134|gb|EES89793.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313130971|gb|EFR48588.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 325

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++K  G +V+ +   +    K  K +            + + 
Sbjct: 1   MKALALFSGGLDSLLAIKIIKDMGIEVLALHFDIGFIGKNDKSEA----------LKAIL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I+V   V D + +F N V+  F   Y  G+   PC+DC+  + FS   S+    GA  
Sbjct: 51  SQIDVPLKVVDIKRQFFNEVL--FEPKYGYGKYFNPCIDCHGNM-FSHAFSMLESEGASF 107

Query: 141 LATGHYIRSR 150
           + +G  +  R
Sbjct: 108 VISGEVLGQR 117


>gi|47565044|ref|ZP_00236087.1| argininosuccinate synthase [Bacillus cereus G9241]
 gi|47557830|gb|EAL16155.1| argininosuccinate synthase [Bacillus cereus G9241]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|229175341|ref|ZP_04302856.1| Argininosuccinate synthase [Bacillus cereus MM3]
 gi|228608173|gb|EEK65480.1| Argininosuccinate synthase [Bacillus cereus MM3]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|222098103|ref|YP_002532160.1| argininosuccinate synthase [Bacillus cereus Q1]
 gi|301056138|ref|YP_003794349.1| argininosuccinate synthase [Bacillus anthracis CI]
 gi|254807507|sp|B9J0E1|ASSY_BACCQ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|221242161|gb|ACM14871.1| argininosuccinate synthase [Bacillus cereus Q1]
 gi|300378307|gb|ADK07211.1| argininosuccinate synthase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|306832311|ref|ZP_07465465.1| argininosuccinate synthase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425750|gb|EFM28868.1| argininosuccinate synthase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    L +D YDV+ V + +               G+D+ +   +  
Sbjct: 25  KVILAYSGGLDTSVAITWLMKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 71  KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 130

Query: 140 VLATG 144
            +A G
Sbjct: 131 TIAHG 135


>gi|228910456|ref|ZP_04074271.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 200]
 gi|228849222|gb|EEM94061.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 200]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YDVI + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|228987879|ref|ZP_04147988.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771927|gb|EEM20384.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|229087189|ref|ZP_04219338.1| Argininosuccinate synthase [Bacillus cereus Rock3-44]
 gi|228696161|gb|EEL48997.1| Argininosuccinate synthase [Bacillus cereus Rock3-44]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   +    
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLAFVKEKAI 51

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           ++  V  Y+ D +E F N   +     +   E   P V   +R +    L+ V  Q GA 
Sbjct: 52  SVGAVKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEVAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|196032963|ref|ZP_03100376.1| argininosuccinate synthase [Bacillus cereus W]
 gi|196040846|ref|ZP_03108144.1| argininosuccinate synthase [Bacillus cereus NVH0597-99]
 gi|206977157|ref|ZP_03238056.1| argininosuccinate synthase [Bacillus cereus H3081.97]
 gi|218905860|ref|YP_002453694.1| argininosuccinate synthase [Bacillus cereus AH820]
 gi|228948359|ref|ZP_04110642.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|226729218|sp|B7JS06|ASSY_BACC0 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|195994392|gb|EDX58347.1| argininosuccinate synthase [Bacillus cereus W]
 gi|196028300|gb|EDX66909.1| argininosuccinate synthase [Bacillus cereus NVH0597-99]
 gi|206744642|gb|EDZ56050.1| argininosuccinate synthase [Bacillus cereus H3081.97]
 gi|218539076|gb|ACK91474.1| argininosuccinate synthase [Bacillus cereus AH820]
 gi|228811346|gb|EEM57684.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|49481365|ref|YP_038679.1| argininosuccinate synthase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|68566243|sp|Q6HCP7|ASSY_BACHK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|49332921|gb|AAT63567.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|42783811|ref|NP_981058.1| argininosuccinate synthase [Bacillus cereus ATCC 10987]
 gi|47605388|sp|P61520|ASSY_BACC1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|42739741|gb|AAS43666.1| argininosuccinate synthase [Bacillus cereus ATCC 10987]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|47095799|ref|ZP_00233404.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|254899212|ref|ZP_05259136.1| argininosuccinate synthase [Listeria monocytogenes J0161]
 gi|254912647|ref|ZP_05262659.1| argininosuccinate synthase [Listeria monocytogenes J2818]
 gi|254936974|ref|ZP_05268671.1| argininosuccinate synthase [Listeria monocytogenes F6900]
 gi|284802536|ref|YP_003414401.1| argininosuccinate synthase [Listeria monocytogenes 08-5578]
 gi|284995678|ref|YP_003417446.1| argininosuccinate synthase [Listeria monocytogenes 08-5923]
 gi|47015803|gb|EAL06731.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609577|gb|EEW22185.1| argininosuccinate synthase [Listeria monocytogenes F6900]
 gi|284058098|gb|ADB69039.1| argininosuccinate synthase [Listeria monocytogenes 08-5578]
 gi|284061145|gb|ADB72084.1| argininosuccinate synthase [Listeria monocytogenes 08-5923]
 gi|293590642|gb|EFF98976.1| argininosuccinate synthase [Listeria monocytogenes J2818]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|229158237|ref|ZP_04286304.1| Argininosuccinate synthase [Bacillus cereus ATCC 4342]
 gi|228625195|gb|EEK81955.1| Argininosuccinate synthase [Bacillus cereus ATCC 4342]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|163942362|ref|YP_001647246.1| argininosuccinate synthase [Bacillus weihenstephanensis KBAB4]
 gi|229889861|sp|A9VKE1|ASSY_BACWK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|163864559|gb|ABY45618.1| Argininosuccinate synthase [Bacillus weihenstephanensis KBAB4]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  Y+ D +E + N  A+I   A +   G+ PL     +R +    L+ +  Q GA
Sbjct: 52  SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPL-VSALSRPLIAKKLVEIAEQEGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 SAVAHG 116


>gi|56756513|gb|AAW26429.1| SJCHGC00881 protein [Schistosoma japonicum]
          Length = 259

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 54/242 (22%)

Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDI 245
           FP+G + K  V+ +A+++GL  I  + +S  +CF+ + ++ + +        GI  +   
Sbjct: 2   FPVGHLLKTQVKQIAQDIGLSRIYSRRESMGMCFIGKRRFSEFIDNYLEPRPGICKDFG- 60

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHR 302
                Q+L  H G+ ++T+GQR  +    G P +V  +D +   + V       SL + +
Sbjct: 61  ---TDQVLEEHTGVHHFTLGQRVPMKRFSG-PYYVCKMDYHKQIIYVVRDPTHPSLFMRK 116

Query: 303 IYLREINWLGDGLFEDAVVDGFKC-----FVKIRSSQDP--------------VPVFVQR 343
            +     W+    F    +   +      +  +R S  P              V   + +
Sbjct: 117 CWSGPAVWINSKPFSSINLKNIQFQWQNKWRPVRCSLKPFNEISLAAAYVKKDVKRCLSK 176

Query: 344 NDDGVYVDF------EKSEVG-------------VASGQACVFYTSDSNEARVLGGGIIS 384
           +D+   V+       +  E+G             +A GQ C FY  D N    LGG +I 
Sbjct: 177 SDNAALVNTIDASIEDNREIGPCLSIELEVPMRCLAPGQWCAFY--DGNVC--LGGAMIC 232

Query: 385 GS 386
           GS
Sbjct: 233 GS 234


>gi|30264704|ref|NP_847081.1| argininosuccinate synthase [Bacillus anthracis str. Ames]
 gi|47530173|ref|YP_021522.1| argininosuccinate synthase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187522|ref|YP_030775.1| argininosuccinate synthase [Bacillus anthracis str. Sterne]
 gi|165869602|ref|ZP_02214260.1| argininosuccinate synthase [Bacillus anthracis str. A0488]
 gi|167634048|ref|ZP_02392371.1| argininosuccinate synthase [Bacillus anthracis str. A0442]
 gi|167638113|ref|ZP_02396391.1| argininosuccinate synthase [Bacillus anthracis str. A0193]
 gi|170685699|ref|ZP_02876922.1| argininosuccinate synthase [Bacillus anthracis str. A0465]
 gi|170705390|ref|ZP_02895854.1| argininosuccinate synthase [Bacillus anthracis str. A0389]
 gi|177651161|ref|ZP_02933992.1| argininosuccinate synthase [Bacillus anthracis str. A0174]
 gi|190569076|ref|ZP_03021976.1| argininosuccinate synthase [Bacillus anthracis Tsiankovskii-I]
 gi|227817420|ref|YP_002817429.1| argininosuccinate synthase [Bacillus anthracis str. CDC 684]
 gi|229601082|ref|YP_002868913.1| argininosuccinate synthase [Bacillus anthracis str. A0248]
 gi|254687441|ref|ZP_05151297.1| argininosuccinate synthase [Bacillus anthracis str. CNEVA-9066]
 gi|254725004|ref|ZP_05186787.1| argininosuccinate synthase [Bacillus anthracis str. A1055]
 gi|254736741|ref|ZP_05194447.1| argininosuccinate synthase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741778|ref|ZP_05199465.1| argininosuccinate synthase [Bacillus anthracis str. Kruger B]
 gi|254754624|ref|ZP_05206659.1| argininosuccinate synthase [Bacillus anthracis str. Vollum]
 gi|254757456|ref|ZP_05209483.1| argininosuccinate synthase [Bacillus anthracis str. Australia 94]
 gi|33300934|sp|Q81KV7|ASSY_BACAN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807504|sp|C3PB97|ASSY_BACAA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807505|sp|C3L9T6|ASSY_BACAC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|30259379|gb|AAP28567.1| argininosuccinate synthase [Bacillus anthracis str. Ames]
 gi|47505321|gb|AAT33997.1| argininosuccinate synthase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181449|gb|AAT56825.1| argininosuccinate synthase [Bacillus anthracis str. Sterne]
 gi|164714431|gb|EDR19950.1| argininosuccinate synthase [Bacillus anthracis str. A0488]
 gi|167513930|gb|EDR89298.1| argininosuccinate synthase [Bacillus anthracis str. A0193]
 gi|167530849|gb|EDR93551.1| argininosuccinate synthase [Bacillus anthracis str. A0442]
 gi|170129515|gb|EDS98378.1| argininosuccinate synthase [Bacillus anthracis str. A0389]
 gi|170670163|gb|EDT20903.1| argininosuccinate synthase [Bacillus anthracis str. A0465]
 gi|172082987|gb|EDT68049.1| argininosuccinate synthase [Bacillus anthracis str. A0174]
 gi|190559858|gb|EDV13843.1| argininosuccinate synthase [Bacillus anthracis Tsiankovskii-I]
 gi|227002602|gb|ACP12345.1| argininosuccinate synthase [Bacillus anthracis str. CDC 684]
 gi|229265490|gb|ACQ47127.1| argininosuccinate synthase [Bacillus anthracis str. A0248]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|46908325|ref|YP_014714.1| argininosuccinate synthase [Listeria monocytogenes str. 4b F2365]
 gi|47091758|ref|ZP_00229553.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858]
 gi|217963752|ref|YP_002349430.1| argininosuccinate synthase [Listeria monocytogenes HCC23]
 gi|224498464|ref|ZP_03666813.1| argininosuccinate synthase [Listeria monocytogenes Finland 1988]
 gi|226224696|ref|YP_002758803.1| argininosuccinate synthase [Listeria monocytogenes Clip81459]
 gi|254826266|ref|ZP_05231267.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194]
 gi|254854078|ref|ZP_05243426.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503]
 gi|254931801|ref|ZP_05265160.1| argininosuccinate synthase [Listeria monocytogenes HPB2262]
 gi|255520760|ref|ZP_05387997.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-175]
 gi|290892237|ref|ZP_06555233.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071]
 gi|300765563|ref|ZP_07075543.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017]
 gi|68566245|sp|Q71XS4|ASSY_LISMF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807527|sp|B8DH28|ASSY_LISMH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|259585362|sp|C1KX43|ASSY_LISMC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|46881596|gb|AAT04891.1| argininosuccinate synthase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47019769|gb|EAL10507.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858]
 gi|217333022|gb|ACK38816.1| argininosuccinate synthase [Listeria monocytogenes HCC23]
 gi|225877158|emb|CAS05871.1| Putative argininosuccinate synthase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607472|gb|EEW20080.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503]
 gi|290558360|gb|EFD91878.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071]
 gi|293583355|gb|EFF95387.1| argininosuccinate synthase [Listeria monocytogenes HPB2262]
 gi|293595505|gb|EFG03266.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194]
 gi|300513765|gb|EFK40832.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017]
 gi|307571673|emb|CAR84852.1| argG [Listeria monocytogenes L99]
 gi|328465898|gb|EGF37079.1| argininosuccinate synthase [Listeria monocytogenes 1816]
 gi|328472470|gb|EGF43335.1| argininosuccinate synthase [Listeria monocytogenes 220]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|331270460|ref|YP_004396952.1| hypothetical protein CbC4_2290 [Clostridium botulinum BKT015925]
 gi|329127010|gb|AEB76955.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 327

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y              G D  +A+R+  
Sbjct: 3   KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPD--NAKRMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ +   +    P    +  G+   PC+DC+   ++++  L    +  AD 
Sbjct: 49  QIDIPLEVVDFSKEHFDMTKDP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|228917274|ref|ZP_04080831.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935940|ref|ZP_04098750.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823708|gb|EEM69530.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842475|gb|EEM87566.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|229093727|ref|ZP_04224826.1| Argininosuccinate synthase [Bacillus cereus Rock3-42]
 gi|228689612|gb|EEL43420.1| Argininosuccinate synthase [Bacillus cereus Rock3-42]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|228954898|ref|ZP_04116918.1| Argininosuccinate synthase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960898|ref|ZP_04122531.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048336|ref|ZP_04193904.1| Argininosuccinate synthase [Bacillus cereus AH676]
 gi|229072132|ref|ZP_04205341.1| Argininosuccinate synthase [Bacillus cereus F65185]
 gi|229129913|ref|ZP_04258879.1| Argininosuccinate synthase [Bacillus cereus BDRD-Cer4]
 gi|229147190|ref|ZP_04275548.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST24]
 gi|229192833|ref|ZP_04319791.1| Argininosuccinate synthase [Bacillus cereus ATCC 10876]
 gi|228590672|gb|EEK48533.1| Argininosuccinate synthase [Bacillus cereus ATCC 10876]
 gi|228636300|gb|EEK92772.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST24]
 gi|228653604|gb|EEL09476.1| Argininosuccinate synthase [Bacillus cereus BDRD-Cer4]
 gi|228711066|gb|EEL63032.1| Argininosuccinate synthase [Bacillus cereus F65185]
 gi|228723061|gb|EEL74438.1| Argininosuccinate synthase [Bacillus cereus AH676]
 gi|228798794|gb|EEM45774.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804887|gb|EEM51486.1| Argininosuccinate synthase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|118479773|ref|YP_896924.1| argininosuccinate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|229186890|ref|ZP_04314045.1| Argininosuccinate synthase [Bacillus cereus BGSC 6E1]
 gi|118418998|gb|ABK87417.1| argininosuccinate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|228596627|gb|EEK54292.1| Argininosuccinate synthase [Bacillus cereus BGSC 6E1]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|52140876|ref|YP_085953.1| argininosuccinate synthase [Bacillus cereus E33L]
 gi|196043913|ref|ZP_03111150.1| argininosuccinate synthase [Bacillus cereus 03BB108]
 gi|225866612|ref|YP_002751990.1| argininosuccinate synthase [Bacillus cereus 03BB102]
 gi|68566239|sp|Q633G4|ASSY_BACCZ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|172044116|sp|A0RJM4|ASSY_BACAH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807506|sp|C1EUX9|ASSY_BACC3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|51974345|gb|AAU15895.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus
           cereus E33L]
 gi|196025249|gb|EDX63919.1| argininosuccinate synthase [Bacillus cereus 03BB108]
 gi|225789329|gb|ACO29546.1| argininosuccinate synthase [Bacillus cereus 03BB102]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|114566689|ref|YP_753843.1| hypothetical protein Swol_1163 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337624|gb|ABI68472.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 328

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V   SGG+DS + AAL+K+ G  VIGV    ++S      + +  A +++     V 
Sbjct: 1   MKAVCLFSGGLDSQLAAALVKKQGVTVIGVN---FSSPFFGANRATHMAAKELGIQLFVL 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           DT     Y+   EE  +N V       Y  G+   PC+DC+
Sbjct: 58  DT--GKEYI---EEVLKNPV-------YGYGKNFNPCIDCH 86


>gi|315283144|ref|ZP_07871401.1| argininosuccinate synthase [Listeria marthii FSL S4-120]
 gi|313613211|gb|EFR87098.1| argininosuccinate synthase [Listeria marthii FSL S4-120]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|75759980|ref|ZP_00740048.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903149|ref|ZP_04067283.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 4222]
 gi|74492538|gb|EAO55686.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228856431|gb|EEN00957.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 4222]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YDVI + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|228929683|ref|ZP_04092701.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229124200|ref|ZP_04253392.1| Argininosuccinate synthase [Bacillus cereus 95/8201]
 gi|228659502|gb|EEL15150.1| Argininosuccinate synthase [Bacillus cereus 95/8201]
 gi|228830070|gb|EEM75689.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|229163623|ref|ZP_04291572.1| Argininosuccinate synthase [Bacillus cereus R309803]
 gi|228619873|gb|EEK76750.1| Argininosuccinate synthase [Bacillus cereus R309803]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|288906265|ref|YP_003431487.1| argininosuccinate synthase [Streptococcus gallolyticus UCN34]
 gi|288732991|emb|CBI14572.1| argininosuccinate synthase [Streptococcus gallolyticus UCN34]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    L +D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLMKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 51  KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|229062317|ref|ZP_04199637.1| Argininosuccinate synthase [Bacillus cereus AH603]
 gi|228716980|gb|EEL68662.1| Argininosuccinate synthase [Bacillus cereus AH603]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  Y+ D +E + N  A+I   A +   G+ PL     +R +    L+ +  Q GA
Sbjct: 62  SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSA-LSRPLIAKKLVEIAEQEGA 120

Query: 139 DVLATG 144
             +A G
Sbjct: 121 SAVAHG 126


>gi|229169357|ref|ZP_04297067.1| Argininosuccinate synthase [Bacillus cereus AH621]
 gi|228614120|gb|EEK71235.1| Argininosuccinate synthase [Bacillus cereus AH621]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  Y+ D +E + N  A+I   A +   G+ PL     +R +    L+ +  Q GA
Sbjct: 62  SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSA-LSRPLIAKKLVEIAEQEGA 120

Query: 139 DVLATG 144
             +A G
Sbjct: 121 SAVAHG 126


>gi|30022705|ref|NP_834336.1| argininosuccinate synthase [Bacillus cereus ATCC 14579]
 gi|206969614|ref|ZP_03230568.1| argininosuccinate synthase [Bacillus cereus AH1134]
 gi|218234148|ref|YP_002369424.1| argininosuccinate synthase [Bacillus cereus B4264]
 gi|229112095|ref|ZP_04241638.1| Argininosuccinate synthase [Bacillus cereus Rock1-15]
 gi|229152824|ref|ZP_04281007.1| Argininosuccinate synthase [Bacillus cereus m1550]
 gi|296505099|ref|YP_003666799.1| argininosuccinate synthase [Bacillus thuringiensis BMB171]
 gi|33300931|sp|Q817C6|ASSY_BACCR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226729216|sp|B7H6Y5|ASSY_BACC4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|29898264|gb|AAP11537.1| Argininosuccinate synthase [Bacillus cereus ATCC 14579]
 gi|206735302|gb|EDZ52470.1| argininosuccinate synthase [Bacillus cereus AH1134]
 gi|218162105|gb|ACK62097.1| argininosuccinate synthase [Bacillus cereus B4264]
 gi|228630644|gb|EEK87290.1| Argininosuccinate synthase [Bacillus cereus m1550]
 gi|228671418|gb|EEL26719.1| Argininosuccinate synthase [Bacillus cereus Rock1-15]
 gi|296326151|gb|ADH09079.1| argininosuccinate synthase [Bacillus thuringiensis BMB171]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|315427301|dbj|BAJ48912.1| transcription regulator ExsB related protein [Candidatus
           Caldiarchaeum subterraneum]
 gi|315428195|dbj|BAJ49779.1| transcription regulator ExsB related protein [Candidatus
           Caldiarchaeum subterraneum]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 28/213 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSR--KASKRKGSCCAGQD--VY 74
           M++V  +SGG+DS+V+   L+ +G+ ++ +TL  +  N R  +A+K+     +G++  VY
Sbjct: 1   MKIVALVSGGIDSTVMLWKLRSEGHSILPLTLLTFRRNPREIEAAKKISKAASGREPIVY 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D       ++    ++DY +  +  V   F S       P   +     + +S    V  
Sbjct: 61  D-------VSFLRELYDYPQHIKERVFQQFPS------LPNIVIPYRNIIFYSVAAYVAC 107

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              A+ +A GH       + D G+         +   D    L  +T      +  P+  
Sbjct: 108 HEAAEAIAGGHTREDMERIPDVGE---------EFFADLEKILNKSTPFHRVKILTPVAG 158

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           + K  +  L  E+G  I +      +     GK
Sbjct: 159 LWKPEIMRLGVELGAPIGETWSCWSVFEKHCGK 191


>gi|229135467|ref|ZP_04264254.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST196]
 gi|228648028|gb|EEL04076.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST196]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  Y+ D +E + N  A+I   A +   G+ PL     +R +    L+ +  Q GA
Sbjct: 62  SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPL-VSALSRPLIAKKLVEIAEQEGA 120

Query: 139 DVLATG 144
             +A G
Sbjct: 121 SAVAHG 126


>gi|149007912|ref|ZP_01831490.1| argininosuccinate synthase [Streptococcus pneumoniae SP18-BS74]
 gi|149026542|ref|ZP_01836599.1| argininosuccinate synthase [Streptococcus pneumoniae SP23-BS72]
 gi|168483583|ref|ZP_02708535.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae CDC1873-00]
 gi|307126334|ref|YP_003878365.1| argininosuccinate synthase [Streptococcus pneumoniae 670-6B]
 gi|147760535|gb|EDK67510.1| argininosuccinate synthase [Streptococcus pneumoniae SP18-BS74]
 gi|147929229|gb|EDK80232.1| argininosuccinate synthase [Streptococcus pneumoniae SP23-BS72]
 gi|172042913|gb|EDT50959.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae CDC1873-00]
 gi|306483396|gb|ADM90265.1| argininosuccinate synthase [Streptococcus pneumoniae 670-6B]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|229013835|ref|ZP_04170963.1| Argininosuccinate synthase [Bacillus mycoides DSM 2048]
 gi|228747504|gb|EEL97379.1| Argininosuccinate synthase [Bacillus mycoides DSM 2048]
          Length = 411

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  Y+ D +E + N  A+I   A +   G+ PL     +R +    L+ +  Q GA
Sbjct: 62  SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPL-VSALSRPLIAKKLVEIAEQEGA 120

Query: 139 DVLATG 144
             +A G
Sbjct: 121 SAVAHG 126


>gi|167462072|ref|ZP_02327161.1| argininosuccinate synthase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383016|ref|ZP_08056846.1| argininosuccinate synthase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153039|gb|EFX45499.1| argininosuccinate synthase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 408

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRV 79
           ++++A SGG+D+SV    L+ + GYDV+ V + +               G+D+ +   + 
Sbjct: 5   KIILAYSGGLDTSVAIKWLQDNYGYDVVAVAIDV-------------GEGKDLDFVKAKA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D +ERF +  ++P   + A  E   P V   +R +    L+ +  + GA
Sbjct: 52  LQVGAVESYVVDAKERFADEFVLPVIKANAMYENKYPLVSALSRPLISRVLVEMAEKTGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAIAHG 117


>gi|171779008|ref|ZP_02920016.1| hypothetical protein STRINF_00891 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282366|gb|EDT47791.1| hypothetical protein STRINF_00891 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    L +D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLMKD-YDVLAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 51  KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|256810146|ref|YP_003127515.1| exsB protein [Methanocaldococcus fervens AG86]
 gi|256793346|gb|ACV24015.1| exsB protein [Methanocaldococcus fervens AG86]
          Length = 232

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 16/98 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +SGG+DS+V   + K  GY++  +T      +KA KR        ++  ++++C
Sbjct: 1   MKAVTVLSGGLDSTVSTLIAKNLGYEITAITFNY--GQKAVKR--------EINASKKIC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
           + ++++H V D         I  F  S    E  +P +
Sbjct: 51  EILDINHIVVDL------PFIKQFKKSSLITENEIPSL 82


>gi|303254795|ref|ZP_07340895.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           BS455]
 gi|303259155|ref|ZP_07345133.1| argininosuccinate synthase [Streptococcus pneumoniae SP-BS293]
 gi|303260912|ref|ZP_07346861.1| argininosuccinate synthase [Streptococcus pneumoniae SP14-BS292]
 gi|303263239|ref|ZP_07349162.1| argininosuccinate synthase [Streptococcus pneumoniae BS397]
 gi|303267651|ref|ZP_07353487.1| argininosuccinate synthase [Streptococcus pneumoniae BS457]
 gi|303269997|ref|ZP_07355728.1| argininosuccinate synthase [Streptococcus pneumoniae BS458]
 gi|301801070|emb|CBW33737.1| putative argininosuccinate synthase (fragment) [Streptococcus
           pneumoniae INV200]
 gi|302598232|gb|EFL65278.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           BS455]
 gi|302637749|gb|EFL68235.1| argininosuccinate synthase [Streptococcus pneumoniae SP14-BS292]
 gi|302639573|gb|EFL70030.1| argininosuccinate synthase [Streptococcus pneumoniae SP-BS293]
 gi|302640473|gb|EFL70889.1| argininosuccinate synthase [Streptococcus pneumoniae BS458]
 gi|302642820|gb|EFL73131.1| argininosuccinate synthase [Streptococcus pneumoniae BS457]
 gi|302647012|gb|EFL77236.1| argininosuccinate synthase [Streptococcus pneumoniae BS397]
 gi|332077416|gb|EGI87877.1| arginosuccinate synthase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 139

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|254457550|ref|ZP_05070978.1| thiamine biosynthesis protein:ExsB [Campylobacterales bacterium GD
           1]
 gi|207086342|gb|EDZ63626.1| thiamine biosynthesis protein:ExsB [Campylobacterales bacterium GD
           1]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++   L+   G DV+ V +            G       +   + +C
Sbjct: 1   MKAIALFSGGLDSTLAMKLIIDQGIDVLAVNIS----------TGFGSTKDRLEHMQNMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +     + D +  F   V+  F   +  G+   PC+DC+  + F+    +    GA  
Sbjct: 51  DQVGAELKIIDIQSEFLQDVL--FDPKHGYGKNFNPCIDCHAKM-FAVAKRIMEAEGASF 107

Query: 141 LATGHYIRSR 150
           L +G  +  R
Sbjct: 108 LVSGEVMGQR 117


>gi|326942415|gb|AEA18311.1| argininosuccinate synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLGFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 52  SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|284163626|ref|YP_003401905.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284013281|gb|ADB59232.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 429

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RV +A SGG+D++V   LL+ + GYD VIGVT+ +   + AS+ +          +A  
Sbjct: 2   TRVALAFSGGLDTTVCVPLLEEEYGYDDVIGVTVDV--GQPASEFE----------EAEE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + HYV D +E F +  +    ++      PL      R V    +L V  +   
Sbjct: 50  TADALGLEHYVVDAKEEFADLCLEGVRANATYQGYPLGTA-LARPVIAEAILEVAEE--Q 106

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           D     H    +   G+D  R   + R  DLE
Sbjct: 107 DCTGIAHGCTGK---GNDQLRFEAIWRDSDLE 135


>gi|229817944|ref|ZP_04448226.1| hypothetical protein BIFANG_03231 [Bifidobacterium angulatum DSM
           20098]
 gi|229784548|gb|EEP20662.1| hypothetical protein BIFANG_03231 [Bifidobacterium angulatum DSM
           20098]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 23/135 (17%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAG 70
           DKN    R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K +   C  
Sbjct: 3   DKN----RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKERALACGA 58

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDL 129
                         V  YV D  + F N   +    + A  E   P V   +R +    L
Sbjct: 59  --------------VEAYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHL 104

Query: 130 LSVTRQLGADVLATG 144
           +    Q GAD ++ G
Sbjct: 105 VRAAHQFGADTISHG 119


>gi|119025937|ref|YP_909782.1| argininosuccinate synthase [Bifidobacterium adolescentis ATCC
           15703]
 gi|171473028|sp|A1A1W7|ASSY_BIFAA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118765521|dbj|BAF39700.1| argininosuccinate synthase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 418

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C         
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 65  -------VEAYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 117

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 118 GADTISHG 125


>gi|57641627|ref|YP_184105.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159951|dbj|BAD85881.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
          KOD1]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          RL+  D D++P   +V VA SGG DS+    +L+  G+D I +T++L
Sbjct: 44 RLSGKDFDRSPTGAKVAVAFSGGSDSTATLKVLRWAGFDAIPITVKL 90


>gi|228993360|ref|ZP_04153276.1| Argininosuccinate synthase [Bacillus pseudomycoides DSM 12442]
 gi|228766428|gb|EEM15071.1| Argininosuccinate synthase [Bacillus pseudomycoides DSM 12442]
          Length = 403

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 7   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLEFVKEKAL 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +     +   E   P V   +R +    L+ +  Q GA 
Sbjct: 54  SVGAIKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAS 113

Query: 140 VLATG 144
            +A G
Sbjct: 114 AVAHG 118


>gi|16801260|ref|NP_471528.1| argininosuccinate synthase [Listeria innocua Clip11262]
 gi|21263434|sp|Q929S9|ASSY_LISIN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|16414708|emb|CAC97424.1| argG [Listeria innocua Clip11262]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVS-HYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASASYTIDAKEEFAENFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           Q GA  +A G
Sbjct: 107 QEGASAIAHG 116


>gi|228941810|ref|ZP_04104357.1| Argininosuccinate synthase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974735|ref|ZP_04135301.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981330|ref|ZP_04141630.1| Argininosuccinate synthase [Bacillus thuringiensis Bt407]
 gi|228778530|gb|EEM26797.1| Argininosuccinate synthase [Bacillus thuringiensis Bt407]
 gi|228785138|gb|EEM33151.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818022|gb|EEM64100.1| Argininosuccinate synthase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLGFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|227497662|ref|ZP_03927876.1| argininosuccinate synthase [Actinomyces urogenitalis DSM 15434]
 gi|226832892|gb|EEH65275.1| argininosuccinate synthase [Actinomyces urogenitalis DSM 15434]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + ++ G +VI V + +               G+D+   R R 
Sbjct: 7   RVVLAYSGGLDTSVAIGWIGEQTGREVITVAVDVGQ------------GGEDLEVIRQRA 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F N   +P   + A  E   P V   +R V    L+   RQ GA
Sbjct: 55  LDCGAVEAYVADARDEFANEYCMPALKANALYEGKYPLVSAISRPVIAKHLVKAARQFGA 114

Query: 139 DVLATG 144
             +A G
Sbjct: 115 STVAHG 120


>gi|241895795|ref|ZP_04783091.1| argininosuccinate synthase [Weissella paramesenteroides ATCC 33313]
 gi|241870838|gb|EER74589.1| argininosuccinate synthase [Weissella paramesenteroides ATCC 33313]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +   K   KG              
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNAGYDVIACCIDVGEEKDLVKIQEKGKQVGA--------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                +   V D ++ F    ++    ++A  E   P +   +R +    L+ V +Q GA
Sbjct: 56  -----IESVVIDAQQEFAEEYVLVALQAHAYYEGKYPLISALSRPLIAKKLVEVAKQYGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|229019857|ref|ZP_04176658.1| Argininosuccinate synthase [Bacillus cereus AH1273]
 gi|229026084|ref|ZP_04182465.1| Argininosuccinate synthase [Bacillus cereus AH1272]
 gi|228735237|gb|EEL85851.1| Argininosuccinate synthase [Bacillus cereus AH1272]
 gi|228741464|gb|EEL91663.1| Argininosuccinate synthase [Bacillus cereus AH1273]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|225850620|ref|YP_002730854.1| thiamine biosynthesis protein [Persephonella marina EX-H1]
 gi|225645577|gb|ACO03763.1| thiamine biosynthesis protein [Persephonella marina EX-H1]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVY--D 75
           K  + V   SGG+DS++   L++  G DV  V     +   +  +R+G        Y   
Sbjct: 6   KGKKAVALYSGGLDSTLAIKLIQNQGIDVTAVHFYTGFCITETKRRRGEKKEDGSHYMNP 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A +          + D  + + N V  P    Y  G    PC+DC R   +     +   
Sbjct: 66  ALKYAAKYGFKLEIVDISDEYFNIVTNP---KYGYGSNINPCIDC-RAFMYKKAREIMED 121

Query: 136 LGADVLATGHYIRSR 150
           +GAD L +G  +  R
Sbjct: 122 IGADFLVSGEVLNQR 136


>gi|154488644|ref|ZP_02029493.1| hypothetical protein BIFADO_01951 [Bifidobacterium adolescentis
           L2-32]
 gi|212715749|ref|ZP_03323877.1| hypothetical protein BIFCAT_00649 [Bifidobacterium catenulatum DSM
           16992]
 gi|225352198|ref|ZP_03743221.1| hypothetical protein BIFPSEUDO_03814 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|154082781|gb|EDN81826.1| hypothetical protein BIFADO_01951 [Bifidobacterium adolescentis
           L2-32]
 gi|212661116|gb|EEB21691.1| hypothetical protein BIFCAT_00649 [Bifidobacterium catenulatum DSM
           16992]
 gi|225157445|gb|EEG70784.1| hypothetical protein BIFPSEUDO_03814 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 418

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C         
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 65  -------VEAYVVDARDEFANEYCMKALKANALYEGVYPLVSAISRPLISKHLVRAAHQF 117

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 118 GADTISHG 125


>gi|313681210|ref|YP_004058948.1| queuosine synthesis [Sulfuricurvum kujiense DSM 16994]
 gi|313154070|gb|ADR32748.1| Queuosine synthesis [Sulfuricurvum kujiense DSM 16994]
          Length = 323

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++ A L+   G +VI   +            G       +   + +C
Sbjct: 1   MKAIALFSGGLDSTLAAKLIIDQGIEVIACNIN----------TGFGSTKDRLAHMKNMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I       D  + +   V+  F   Y  G+   PC+DC+  + F     V  + GA  
Sbjct: 51  EQIGAEFRSVDIRDEYIREVL--FTPKYGYGKNFNPCIDCHAKM-FEVAKRVMEEWGASF 107

Query: 141 LATGHYIRSR 150
           L +G  +  R
Sbjct: 108 LISGEVLGQR 117


>gi|320547573|ref|ZP_08041858.1| argininosuccinate synthase [Streptococcus equinus ATCC 9812]
 gi|320447648|gb|EFW88406.1| argininosuccinate synthase [Streptococcus equinus ATCC 9812]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    L +D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLMKD-YDVVAVCVDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 51  KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|228999413|ref|ZP_04158992.1| Argininosuccinate synthase [Bacillus mycoides Rock3-17]
 gi|229006968|ref|ZP_04164597.1| Argininosuccinate synthase [Bacillus mycoides Rock1-4]
 gi|228754286|gb|EEM03702.1| Argininosuccinate synthase [Bacillus mycoides Rock1-4]
 gi|228760358|gb|EEM09325.1| Argininosuccinate synthase [Bacillus mycoides Rock3-17]
          Length = 403

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 7   KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLEFVKEKAL 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +     +   E   P V   +R +    L+ +  Q GA 
Sbjct: 54  SVGAIKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAS 113

Query: 140 VLATG 144
            +A G
Sbjct: 114 AVAHG 118


>gi|295399520|ref|ZP_06809502.1| argininosuccinate synthase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978986|gb|EFG54582.1| argininosuccinate synthase [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---IVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
             +      +  YV D +E F N   +    ++A  E   P V   +R +    L+ +  
Sbjct: 47  KEKALKVGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAE 106

Query: 135 QLGADVLATG 144
             GA  +A G
Sbjct: 107 LEGAVAVAHG 116


>gi|91772881|ref|YP_565573.1| argininosuccinate synthase [Methanococcoides burtonii DSM 6242]
 gi|119361289|sp|Q12XK3|ASSY_METBU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|91711896|gb|ABE51823.1| Argininosuccinate synthase [Methanococcoides burtonii DSM 6242]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V +A SGG+D+S+   LLK + GYD VI V + +   +            +DV  A   
Sbjct: 4   KVALAYSGGLDTSICIPLLKEEYGYDEVITVAVDVGQPK------------EDVAQAEEK 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I+  H+  D  E F N  I P   +    E  +      R +    ++ +  Q GA 
Sbjct: 52  AKKISDKHFTLDVREEFVNDYIFPLIRANGDYEGYVMGTSIARPLIAKKVVEIAEQEGAV 111

Query: 140 VLATG 144
            LA G
Sbjct: 112 ALAHG 116


>gi|312109922|ref|YP_003988238.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1]
 gi|311215023|gb|ADP73627.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---IVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
             +      +  YV D +E F N   +    ++A  E   P V   +R +    L+ +  
Sbjct: 47  KEKALKVGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAE 106

Query: 135 QLGADVLATG 144
             GA  +A G
Sbjct: 107 LEGAVAVAHG 116


>gi|228923378|ref|ZP_04086666.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836332|gb|EEM81685.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKDYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|11498169|ref|NP_069395.1| hypothetical protein AF0559 [Archaeoglobus fulgidus DSM 4304]
 gi|2650065|gb|AAB90680.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 22/122 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGGVDSS +AA+ K  G DV+ VT+    S+K+  R        ++ DA ++   
Sbjct: 22  VVIAFSGGVDSSTLAAVCKDAGLDVLAVTVV---SQKSPSR--------EIKDAAKIAME 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V H   + +      ++ P         T   C  C + V  S L+S+  + G D + 
Sbjct: 71  IGVKHEFVNMD------ILTPEFRE----NTSERCYFCKKKV-LSSLVSLAEERGYDAVF 119

Query: 143 TG 144
            G
Sbjct: 120 EG 121


>gi|319651841|ref|ZP_08005966.1| argininosuccinate synthase [Bacillus sp. 2_A_57_CT2]
 gi|317396493|gb|EFV77206.1| argininosuccinate synthase [Bacillus sp. 2_A_57_CT2]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 23/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           +VV+A SGG+D+SV    L+  GY V+                 +CC     G+D+   +
Sbjct: 5   KVVLAYSGGLDTSVAVKWLQDQGYAVV-----------------ACCLDVGEGKDLNFIQ 47

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +   T+  V  YV D +E F N   +    ++A  E   P V   +R +    L+ V  +
Sbjct: 48  KKALTVGAVQSYVIDAKEEFANEYALIALQAHALYENKYPLVSALSRPLIAKKLVEVAEK 107

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 108 EGAVAVAHG 116


>gi|126461244|ref|YP_001042358.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102908|gb|ABN75586.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 514

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
            V+ MSGGVDS++ AAL K  G+ V+G TL +      + R    CA
Sbjct: 75  AVIGMSGGVDSALTAALFKAAGWHVVGHTLPIEQDPNETDRGIEACA 121


>gi|299821493|ref|ZP_07053381.1| argininosuccinate synthase [Listeria grayi DSM 20601]
 gi|299817158|gb|EFI84394.1| argininosuccinate synthase [Listeria grayi DSM 20601]
          Length = 404

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GYDVI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLLESGYDVI-----------------ACCLDVGEGKNLDFVK 47

Query: 78  RVCDTINVS-HYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKALTVGASASYTIDAKEEFAKDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
             GA  +A G
Sbjct: 107 TEGASAIAHG 116


>gi|221638227|ref|YP_002524489.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides KD131]
 gi|221159008|gb|ACL99987.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides KD131]
          Length = 514

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
            V+ MSGGVDS++ AAL K  G+ V+G TL +      + R    CA
Sbjct: 75  AVIGMSGGVDSALTAALFKAAGWHVVGHTLPIEQDPTETDRGIEACA 121


>gi|118445022|ref|YP_879024.1| hypothetical protein NT01CX_0558 [Clostridium novyi NT]
 gi|118135478|gb|ABK62522.1| conserved protein [Clostridium novyi NT]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y              G +  +A+R+  
Sbjct: 3   KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPE--NAKRMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ +   +    P    +  G+   PC+DC+   ++++  L    +  AD 
Sbjct: 49  QIDIPLEVVDFSKEHFDMTKSP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|322378093|ref|ZP_08052579.1| argininosuccinate synthase [Streptococcus sp. M334]
 gi|321280930|gb|EFX57944.1| argininosuccinate synthase [Streptococcus sp. M334]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|148994308|ref|ZP_01823572.1| argininosuccinate synthase [Streptococcus pneumoniae SP9-BS68]
 gi|168489416|ref|ZP_02713615.1| argininosuccinate synthase [Streptococcus pneumoniae SP195]
 gi|147927338|gb|EDK78370.1| argininosuccinate synthase [Streptococcus pneumoniae SP9-BS68]
 gi|183572053|gb|EDT92581.1| argininosuccinate synthase [Streptococcus pneumoniae SP195]
 gi|332075781|gb|EGI86248.1| argininosuccinate synthase [Streptococcus pneumoniae GA17570]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
            +A G   +     G+D  R  +    +DL
Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135


>gi|270284207|ref|ZP_05965742.2| argininosuccinate synthase [Bifidobacterium gallicum DSM 20093]
 gi|270277327|gb|EFA23181.1| argininosuccinate synthase [Bifidobacterium gallicum DSM 20093]
          Length = 427

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 23/148 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNS 57
           VV +   ++    DKN    R+V+A SGG+D+SV    LK R G DV+ V+L   Q   S
Sbjct: 5   VVEKGFPMSDTAQDKN----RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGES 60

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            +  K +   C                V  Y+ D  + F     +    + A  E   P 
Sbjct: 61  LETIKERALACGA--------------VESYIVDARDEFAEEYCMMALKANAMYEDVYPL 106

Query: 118 VDC-NRTVKFSDLLSVTRQLGADVLATG 144
           V   +R +    L+    Q GAD +A G
Sbjct: 107 VSAISRPLITKHLVRAAHQFGADTIAHG 134


>gi|298675346|ref|YP_003727096.1| argininosuccinate synthase [Methanohalobium evestigatum Z-7303]
 gi|298288334|gb|ADI74300.1| argininosuccinate synthase [Methanohalobium evestigatum Z-7303]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           P+  +VV+A SGG+D+SV   LLK + GYD VI V + +                +++ +
Sbjct: 2   PEPKKVVLAYSGGLDTSVCIPLLKEEYGYDEVITVAVNVGQPE------------EEIKE 49

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A    + I+  HY  D  + F N  I P   +    E  +      R +    ++ V  +
Sbjct: 50  ADEKAEKISDKHYTIDARKEFVNDYIFPLIKANGDYEGYVMGTSVARPLIAKKVVEVAEK 109

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
             A  L+ G   +     G+D  R   + R  DLE
Sbjct: 110 EKASALSHGCTGK-----GNDQLRFEAVFRLTDLE 139


>gi|288573314|ref|ZP_06391671.1| argininosuccinate synthase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569055|gb|EFC90612.1| argininosuccinate synthase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+SV    L   GYDV+ +T  +  S    ++K             +
Sbjct: 4   KKGKVVLAYSGGLDTSVAVCWLMERGYDVVTLTADVGQSVNLEEKKA------------K 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              T  V+ YV D +++F    + P   A+    G  PL     +R +    L  V +  
Sbjct: 52  SLQTGAVAAYVMDLKKQFVQEFVWPALKANGMYQGTYPLSSA-LSRPLISQQLAWVAKNE 110

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 111 GAVAVAHG 118


>gi|268611361|ref|ZP_06145088.1| hypothetical protein RflaF_17909 [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 19/112 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ KN  + RV++ +SGG DS      LK+ G DV  +                 C+   
Sbjct: 14  EIIKNSPNPRVIMMLSGGKDSIAALCFLKKLGLDVTAIHFI-----------HKWCSDIP 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             +A+R+C  +++   ++D+   F +++     S +  G    PC  C + +
Sbjct: 63  TNEAKRICQQLDIPLKIYDFTNEFYDSI-----SGFTDGR---PCALCKKNM 106


>gi|253680929|ref|ZP_04861732.1| argininosuccinate synthase [Clostridium botulinum D str. 1873]
 gi|253562778|gb|EES92224.1| argininosuccinate synthase [Clostridium botulinum D str. 1873]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y              G +  +A+R+  
Sbjct: 3   KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPE--NAKRMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+ +   +    P    +  G+   PC+DC+   ++++  L    +  AD 
Sbjct: 49  QIDIPLEVIDFSKEHFDMTKDP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 307

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          P   RVVVA+SGG DS V A +LKR GY+V+G  + L
Sbjct: 45 PPGARVVVALSGGKDSLVTAFVLKRLGYEVLGFFVDL 81


>gi|312869093|ref|ZP_07729267.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3]
 gi|311095339|gb|EFQ53609.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3]
          Length = 409

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD--VYDAR 77
           ++V+A SGG+D+SV  A L   GYDVI   + +       A + K +        V DA+
Sbjct: 5   KIVLAYSGGLDTSVAIAWLMNKGYDVIACCIDVGEGLDLDAIQHKAAAIGAWKSVVIDAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
           R            D+ E+F    ++P    +A  E   P V   +R +    L+ V ++ 
Sbjct: 65  R------------DFAEQF----VLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEY 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAIAHG 116


>gi|313622926|gb|EFR93229.1| argininosuccinate synthase [Listeria innocua FSL J1-023]
          Length = 404

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           ++V+A SGG+D+SV    L   GY+VI                 +CC   DV + + +  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCL--DVGEGKNLDF 45

Query: 80  --CDTINV---SHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                INV   + Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V
Sbjct: 46  IKEKAINVGASASYTIDAKEEFAENFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEV 104

Query: 133 TRQLGADVLATG 144
            RQ GA  +A G
Sbjct: 105 ARQEGASAIAHG 116


>gi|20094941|ref|NP_614788.1| ATPase [Methanopyrus kandleri AV19]
 gi|19888183|gb|AAM02718.1| Predicted ATPase of the PP-loop superfamily [Methanopyrus
          kandleri AV19]
          Length = 265

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
          + P+DMR+ VA SGG DS+  A +L++ GY+V  VT+
Sbjct: 62 EEPRDMRITVAASGGYDSTASAIILRKLGYEVESVTV 98


>gi|307710245|ref|ZP_07646688.1| argininosuccinate synthase [Streptococcus mitis SK564]
 gi|307619007|gb|EFN98140.1| argininosuccinate synthase [Streptococcus mitis SK564]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|228967727|ref|ZP_04128744.1| Argininosuccinate synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228791949|gb|EEM39534.1| Argininosuccinate synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YDVI + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMVDVQEGFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|269925445|ref|YP_003322068.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789105|gb|ACZ41246.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+ A +K + G +VI  T                  G++V +A+
Sbjct: 3   KIKKVVLAYSGGLDTSVILAWIKENYGAEVIAFT-------------ADVGQGEEVEEAK 49

Query: 78  RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQ 135
           +       S  Y  D  E F    + P   + A  E   L      R +   +L+ + R+
Sbjct: 50  QKALATGASKAYALDLREEFVRDFVFPVIRAAAVYENQYLMGTSIARPLIARELVRIARE 109

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 110 EGADAIAHG 118


>gi|229099090|ref|ZP_04230024.1| Argininosuccinate synthase [Bacillus cereus Rock3-29]
 gi|229118120|ref|ZP_04247479.1| Argininosuccinate synthase [Bacillus cereus Rock1-3]
 gi|228665343|gb|EEL20826.1| Argininosuccinate synthase [Bacillus cereus Rock1-3]
 gi|228684318|gb|EEL38262.1| Argininosuccinate synthase [Bacillus cereus Rock3-29]
          Length = 411

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+ +   +  
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAVQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|291456422|ref|ZP_06595812.1| argininosuccinate synthase [Bifidobacterium breve DSM 20213]
 gi|291381699|gb|EFE89217.1| argininosuccinate synthase [Bifidobacterium breve DSM 20213]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K +   C         
Sbjct: 6   RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKERALACGA------- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  +  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 59  -------IESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|260893667|ref|YP_003239764.1| argininosuccinate synthase [Ammonifex degensii KC4]
 gi|260865808|gb|ACX52914.1| argininosuccinate synthase [Ammonifex degensii KC4]
          Length = 399

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           +VV+A SGG+D+S++   LK + GY+VI +T+ L               G+D+   R + 
Sbjct: 4   KVVLAYSGGLDTSIIIPWLKENYGYEVIALTVDL-------------GQGEDLAAIREKA 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGA 138
             +     YV D  E F    + P   + A  E   L      R +    L+ V RQ GA
Sbjct: 51  LRSGAAKAYVVDAREEFVREYVFPVLKAGAIYEGKYLLGTAMARPLIAKKLVEVARQEGA 110

Query: 139 DVLATG 144
           + +A G
Sbjct: 111 EAVAHG 116


>gi|302392994|ref|YP_003828814.1| NAD+ synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302205071|gb|ADL13749.1| NAD+ synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 79/200 (39%), Gaps = 49/200 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGGVDSSVVA L+K   G + +GV L    S             +D   A+ V D 
Sbjct: 23  ILGLSGGVDSSVVAGLIKEAFGDNTLGVLLPTDGS-----------IDKDTEYAKLVADE 71

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+              V V     Y   E  L   D    V+ +D +S   Q   D   
Sbjct: 72  FNLE------------TVTVNLGEVYDVFEGKLSEAD----VEEAD-VSHWPQTKLDASG 114

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-------------QLCDLR 189
           TG+        GD+ K R  M     L    +Y +  T+ +                DLR
Sbjct: 115 TGN------RAGDNMKPRLRMVSLHYLAEKMNYVVMGTSNKSEVITGYYTNNGDNATDLR 168

Query: 190 FPLGDMKKESVRDLAREMGL 209
            PLGD+ K  V +LARE+G+
Sbjct: 169 -PLGDLLKTEVWELAREVGV 187


>gi|224373210|ref|YP_002607582.1| thiamine biosynthesis protein:ExsB [Nautilia profundicola AmH]
 gi|223588685|gb|ACM92421.1| thiamine biosynthesis protein:ExsB [Nautilia profundicola AmH]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++   L++    ++ GV + +          G     Q     +++ 
Sbjct: 1   MKAIALFSGGLDSALAIKLIQEQNIEIEGVYIDV----------GFETNKQKTEHLQKLA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           D + +   V D +E++   ++  F   Y  G+   PC+DC+
Sbjct: 51  DELGIKLTVLDIKEQYIKEIL--FNPVYGYGKNMNPCIDCH 89


>gi|289168795|ref|YP_003447064.1| argininosuccinate synthase [Streptococcus mitis B6]
 gi|288908362|emb|CBJ23204.1| argininosuccinate synthase [Streptococcus mitis B6]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMNV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVQDEFATDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|325294366|ref|YP_004280880.1| hypothetical protein Dester_0164 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064814|gb|ADY72821.1| protein of unknown function DUF814 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 327

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 29/134 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +  SGG+DS + A LLK  G++VIGV +             S    +++ D + +  
Sbjct: 5   KVYLLFSGGLDSIIAAKLLKDLGFEVIGVHIT------------SPFFQKNLEDLKNLAK 52

Query: 82  TINVSHYVF----DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + ++        DY E  +N V       Y  G+   PC+DC      + +L   ++L 
Sbjct: 53  ELGINLEFIEAGDDYLEMLKNPV-------YGYGKNINPCIDCK-----AYMLRKIKELA 100

Query: 138 -ADVLATGHYIRSR 150
             +++ATG  +  R
Sbjct: 101 KGNIIATGEVLGQR 114


>gi|307705804|ref|ZP_07642647.1| argininosuccinate synthase [Streptococcus mitis SK597]
 gi|307620636|gb|EFN99729.1| argininosuccinate synthase [Streptococcus mitis SK597]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  Y+ D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYIIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|168185903|ref|ZP_02620538.1| thiamin biosynthesis protein ThiI [Clostridium botulinum C str.
           Eklund]
 gi|169296022|gb|EDS78155.1| thiamin biosynthesis protein ThiI [Clostridium botulinum C str.
           Eklund]
          Length = 327

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 20/130 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y              G +  +A+R+  
Sbjct: 3   KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPE--NAKRMTK 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
            I++   V D+     +    P    +  G+   PC+DC+   ++++  L    +  AD 
Sbjct: 49  QIDIPLEVVDFSREHFDMTKSP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 104 IITGEVLNQR 113


>gi|77462367|ref|YP_351871.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|77386785|gb|ABA77970.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides 2.4.1]
          Length = 514

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
            V+ MSGGVDS++ AAL K  G+ V+G TL +      + R    CA
Sbjct: 75  AVIGMSGGVDSALTAALFKAAGWHVMGHTLPIEQDPTETDRGIEACA 121


>gi|170290101|ref|YP_001736917.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174181|gb|ACB07234.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 260

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 50/196 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++A+SGG+DSS +AAL K+  G   I VT+       AS+ +      +++  ARRV +
Sbjct: 16  VIIALSGGLDSSTLAALCKKLLGDKAIAVTV-------ASELQPE----EEIEGARRVAE 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + +          V       A   P  C  C + + F  +  +  +LG   +
Sbjct: 65  EIGIRHILIE----------VSLLKEEVARNGPDRCYHCKKAM-FRRIRELAEELGVREI 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KKES 199
             G         G    R                            +R P  ++  +KE 
Sbjct: 114 FDGTNASDSWRPGIGALRE-------------------------LGIRSPWAELGFRKEE 148

Query: 200 VRDLAREMGLDIADKS 215
           +R++AR +GL +++K+
Sbjct: 149 IREIARNLGLSVSEKA 164


>gi|159905116|ref|YP_001548778.1| exsB protein [Methanococcus maripaludis C6]
 gi|254764359|sp|A9A873|QUEC_METM6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|159886609|gb|ABX01546.1| exsB protein [Methanococcus maripaludis C6]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+V + + K + YD+  VT             G     Q++  A+++ 
Sbjct: 1  MKAICVLSGGLDSAVTSLVAKSENYDITTVTFNY----------GQMALNQEIKSAKKIS 50

Query: 81 DTINVSHYVFD 91
          + +N  ++V D
Sbjct: 51 EILNADNHVID 61


>gi|148990571|ref|ZP_01821693.1| argininosuccinate synthase [Streptococcus pneumoniae SP6-BS73]
 gi|149010975|ref|ZP_01832280.1| argininosuccinate synthase [Streptococcus pneumoniae SP19-BS75]
 gi|225860148|ref|YP_002741657.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229082|ref|ZP_06962763.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255703|ref|ZP_06979289.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|147764611|gb|EDK71541.1| argininosuccinate synthase [Streptococcus pneumoniae SP19-BS75]
 gi|147924188|gb|EDK75289.1| argininosuccinate synthase [Streptococcus pneumoniae SP6-BS73]
 gi|225727953|gb|ACO23804.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327390521|gb|EGE88861.1| arginosuccinate synthase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 139

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|313632417|gb|EFR99442.1| argininosuccinate synthase [Listeria seeligeri FSL N1-067]
 gi|313636935|gb|EFS02532.1| argininosuccinate synthase [Listeria seeligeri FSL S4-171]
          Length = 404

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY++I                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLAEAGYEII-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASQSYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 107 KEGASAIAHG 116


>gi|78777268|ref|YP_393583.1| ExsB [Sulfurimonas denitrificans DSM 1251]
 gi|110816276|sp|Q30RN3|QUEC_SULDN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|78497808|gb|ABB44348.1| ExsB [Sulfurimonas denitrificans DSM 1251]
          Length = 224

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 11/76 (14%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          N K+ + +  MSGG+DS++ A ++K  GY+++ +    Y  R  +K         +++  
Sbjct: 2  NLKNKKAICIMSGGMDSTLGAYMVKEMGYEIVALHFN-YAQRTEAK---------ELFCF 51

Query: 77 RRVCDTINVSH-YVFD 91
          +++C+ +NVS+ YV D
Sbjct: 52 KKICEALNVSNSYVLD 67


>gi|224283258|ref|ZP_03646580.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287618|ref|YP_003938876.1| Argininosuccinate synthase [Bifidobacterium bifidum S17]
 gi|311064530|ref|YP_003971255.1| argininosuccinate synthase ArgG [Bifidobacterium bifidum PRL2010]
 gi|313140405|ref|ZP_07802598.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251554|gb|ADO53302.1| Argininosuccinate synthase [Bifidobacterium bifidum S17]
 gi|310866849|gb|ADP36218.1| ArgG Argininosuccinate synthase [Bifidobacterium bifidum PRL2010]
 gi|313132915|gb|EFR50532.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV    LK R G DV+ V+L   Q   S +  K +   C         
Sbjct: 6   RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGESLETIKNRALACGA------- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D    F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 59  -------VEAYVVDARNEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli Kim 5]
          Length = 493

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 42/230 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-----RKGSCCAGQDVYDA 76
           R++VA+SGG DS+ +  LL     + +     L  S  A+      R GS    Q V   
Sbjct: 24  RILVAISGGSDSTGLLLLLD----EAVKAAPHLKISLCAATVDHRLRAGSADEAQQVAA- 78

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVTRQ 135
             +C ++ + H +  ++                 G+ P   V    R  ++  L     +
Sbjct: 79  --LCASLGIPHIIAAWQ-----------------GDKPKTGVMAAAREARYDLLAESAER 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA+++ATGH +        D +R  +  R M  E+  S    A    +   +  PL   
Sbjct: 120 LGANLIATGHTL--------DDQRETLQMRGMRTEQVSSGIADAVLFNRRFWILRPLLFS 171

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            +  +R   RE G+   +   ++D+ +    +   + +R++A  A+E DI
Sbjct: 172 SRADIRAFLRERGVPWIEDPSNEDVKY----ERVRIRRRLSADPAMETDI 217


>gi|305664217|ref|YP_003860505.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378786|gb|ADM28625.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 25/128 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV  SGGVDS+++A L     YDV+G      N+  A           ++ DA ++  
Sbjct: 34  KIVVMFSGGVDSTLLAKL----AYDVLG------NNAIAVTIDSPVIPRSEIRDAIQIAK 83

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGAD 139
            I + H V + +E  RN         Y     P  C  C    KF D +  +  +++G D
Sbjct: 84  LIGIRHEVIEIDE-LRN--------KYLVENPPDRCYLCR---KFRDAIVKNWAKRIGFD 131

Query: 140 VLATG-HY 146
           V+A G HY
Sbjct: 132 VVADGLHY 139


>gi|225855892|ref|YP_002737403.1| argininosuccinate synthase [Streptococcus pneumoniae P1031]
 gi|225725292|gb|ACO21144.1| argininosuccinate synthase [Streptococcus pneumoniae P1031]
          Length = 139

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|296109747|ref|YP_003616696.1| NAD+ synthetase [Methanocaldococcus infernus ME]
 gi|295434561|gb|ADG13732.1| NAD+ synthetase [Methanocaldococcus infernus ME]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 46/200 (23%)

Query: 23  VVVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSS  A L +K  G D V+G+ L    +RK           +D+ DA++V 
Sbjct: 21  VVVGLSGGIDSSTTAFLCVKALGKDKVLGLILPEKTTRK-----------EDIEDAKKVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + + + +Y+ D  +     V+  F       E   +P  +    V+   L     +    
Sbjct: 70  EMLGIKYYIIDITD-----VLKAFGLYTPTKEFEKIPDGNLKARVRMCVLYYYANKYNYL 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V  T +  +S +YVG   K   + C  M                       P+  + K  
Sbjct: 125 VAGTAN--KSEIYVGYGTKYGDLACDFM-----------------------PIAHLFKTE 159

Query: 200 VRDLAREMGL--DIADKSDS 217
           VR+LA+++G+  +I +K  S
Sbjct: 160 VRELAKKLGVPKEIIEKPPS 179


>gi|218674465|ref|ZP_03524134.1| argininosuccinate synthase [Rhizobium etli GR56]
          Length = 399

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 1   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 47

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + AA E   L      R +    L+ + R+ GA
Sbjct: 48  EMLGIKEIYIEDVREEFVRDFVFPMFRANAAYEGVYLLGTSIARPLISKHLIDIARKTGA 107

Query: 139 DVLATG 144
           D +A G
Sbjct: 108 DAIAHG 113


>gi|212638331|ref|YP_002314851.1| argininosuccinate synthase [Anoxybacillus flavithermus WK1]
 gi|226729219|sp|B7GGR4|ASSY_ANOFW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|212559811|gb|ACJ32866.1| Argininosuccinate synthase [Anoxybacillus flavithermus WK1]
          Length = 402

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 26/134 (19%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQD 72
           NPK   VV+A SGG+D+SV    L+  GYDV+                 +CC     G+D
Sbjct: 3   NPK---VVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKD 42

Query: 73  V-YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLL 130
           + +   +      V  Y+ D +E F N   +    ++A  E   P +   +R +    L+
Sbjct: 43  LEFVKEKALKVGAVKSYMIDAKEEFANEYALIALQAHALYEGKYPLISALSRPLISKKLV 102

Query: 131 SVTRQLGADVLATG 144
            +    GA  +A G
Sbjct: 103 EIAELEGAVAVAHG 116


>gi|255321785|ref|ZP_05362940.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277]
 gi|255301265|gb|EET80527.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 33/256 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V  SGG+DS +   LL   G +V  + + +  S    ++K            RR  
Sbjct: 1   MKALVLFSGGLDSMISIKLLTTQGIEVTAIHIDIGFS--GDEKKAEIL--------RRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +       + D    +   V+  F   +  G+   PC+DC+  + F   L++    GA  
Sbjct: 51  NEAGAEFKIVDIRNEYLREVL--FTPKHGYGKHFNPCIDCHGYM-FKTALAMMSAEGASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--------- 191
           +ATG  I  R       +RR  M +  +   D+   +      QL     P         
Sbjct: 108 IATGEVIGQRPM----SQRRDAMAQVKNAAGDEEDLILRPMSAQLMKPTKPEHEGWVDRS 163

Query: 192 --LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
             LG   ++  R LA       ++       C +    + + +K     I  + D+   +
Sbjct: 164 KLLGISGRDRKRQLALAKEFGFSEFETPGGGCLLTIESFSNKIKDF---IKFDPDMTSAD 220

Query: 250 GQIL--GRHNGIINYT 263
            Q+L  GRH  + N T
Sbjct: 221 MQLLRIGRHLRLANGT 236


>gi|315304193|ref|ZP_07874562.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596]
 gi|313627428|gb|EFR96192.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596]
          Length = 404

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY+VI                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVEAGYEVI-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASQSYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 107 KEGASAIAHG 116


>gi|254479732|ref|ZP_05093019.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034329|gb|EEB75116.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          P   RVVVA+SGG DS V A +LKR GY+V+G  + L
Sbjct: 45 PPKGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDL 81


>gi|268680598|ref|YP_003305029.1| thiamine biosynthesis protein:ExsB [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618629|gb|ACZ12994.1| thiamine biosynthesis protein:ExsB [Sulfurospirillum deleyianum DSM
           6946]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 31/139 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--------YNS-RKASKRKGSCCAGQ 71
           M+ +V  SGG+DS +   +L + G +VI + + +        Y +  + +K  G+C    
Sbjct: 1   MKALVLFSGGLDSMLAVNVLVQQGIEVIALHVNIGFGIKDDHYETLERRAKLAGACLEVI 60

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           DV D               +Y ++      + F+  Y  G+   PC+DC+  + FS   S
Sbjct: 61  DVRD---------------EYLQK------ILFSPKYGYGKQFNPCIDCHGFM-FSVAKS 98

Query: 132 VTRQLGADVLATGHYIRSR 150
           +  + GA  +ATG  I  R
Sbjct: 99  LLPRYGASFIATGEVIAQR 117


>gi|14590222|ref|NP_142287.1| hypothetical protein PH0300 [Pyrococcus horikoshii OT3]
 gi|3256690|dbj|BAA29373.1| 310aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 23/130 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R++VA+SGG DS+V A +LK+ GY++  + + L  S  + K +           A++
Sbjct: 46  KDERILVAVSGGKDSAVTAYVLKKLGYNIECLHINLGISGYSEKSEEY---------AKK 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL---PCVDCNRTVKFSDLLSVTRQ 135
            C  I    ++   +E             Y  GE      PC  C  T ++  +      
Sbjct: 97  QCKLIGAPLHIVRIKEIL----------GYGIGEVKTRRPPCSYCGLTKRYI-MNKFAYD 145

Query: 136 LGADVLATGH 145
            G D +ATGH
Sbjct: 146 NGFDAIATGH 155


>gi|20806605|ref|NP_621776.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515049|gb|AAM23380.1| predicted ATPase of the PP-loop superfamily implicated in cell
          cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          P   RVVVA+SGG DS V A +LKR GY+V+G  + L
Sbjct: 45 PPKGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDL 81


>gi|15606230|ref|NP_213608.1| hypothetical protein aq_898 [Aquifex aeolicus VF5]
 gi|2983434|gb|AAC07016.1| putative protein [Aquifex aeolicus VF5]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKA-SKRKGSCCAGQDVY 74
           + +  +SGG+DSS+   L++  G +V       G  +  +  R   +K  GS      V 
Sbjct: 5   KALALLSGGLDSSLAVKLVQEQGIEVKAFHFYTGFCITEFKRRLGQTKEDGS----PYVN 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A +    + V   + D  E + + VI P    Y  G+   PCVDC R +       +  
Sbjct: 61  PAIKAAAQLGVPIEIVDISEEYYDVVINP---KYGYGKNVNPCVDC-RIMMLKKAKEIME 116

Query: 135 QLGADVLATGHYIRSR 150
           + G D + TG  +  R
Sbjct: 117 KEGYDFIVTGEVLYQR 132


>gi|307266583|ref|ZP_07548114.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391761|ref|ZP_08213282.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306918380|gb|EFN48623.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992199|gb|EGD50670.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 297

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 26/136 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL------YNSRKASKRKGSCCAGQ 71
           P   RVVVA+SGG DS V   +LKR GY+V+G  + L      ++SR            +
Sbjct: 45  PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDLGIEENNFSSR-----------SR 93

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +V +    C   ++   +   +E+FR  +         A      C  C  T K   +  
Sbjct: 94  EVVE--NFCKENDIPLEIVSLKEKFRKGI------PDVAKHQDRICALCGVT-KRHLMNE 144

Query: 132 VTRQLGADVLATGHYI 147
            T  + AD LATGH +
Sbjct: 145 YTLSVKADALATGHTL 160


>gi|213022904|ref|ZP_03337351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Salmonella enterica subsp. enterica serovar Typhi str.
          404ty]
          Length = 72

 Score = 40.8 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1  MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74 YDARRVCDTINV 85
           DA+ VCD + +
Sbjct: 56 ADAQAVCDKLGI 67


>gi|217968167|ref|YP_002353673.1| Argininosuccinate synthase [Dictyoglomus turgidum DSM 6724]
 gi|254807521|sp|B8E0N9|ASSY_DICTD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|217337266|gb|ACK43059.1| Argininosuccinate synthase [Dictyoglomus turgidum DSM 6724]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV +  L+++   DVI +T+ +               G D+ + +   
Sbjct: 5   KVVLAYSGGLDTSVAIKWLMQKYSLDVITLTVDI-------------GQGIDLNEIKNKA 51

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
           + + V   YV D  E F    I+P   S A  E   P     +R +    L+ V ++ GA
Sbjct: 52  ENLGVEKAYVLDLREEFIKDYIIPAIKSNAMYERVYPLATALSRPLIAKYLVKVAKENGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 KYVAHG 117


>gi|332158560|ref|YP_004423839.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2]
 gi|331034023|gb|AEC51835.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 23/130 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V+VA+SGG DS+V A +LK+ GY++  + + L     + K         ++Y AR+
Sbjct: 46  KNEKVLVAVSGGKDSAVTAYVLKKLGYNIECLHINLGIGEYSEK--------SEMY-ARK 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL---PCVDCNRTVKFSDLLSVTRQ 135
            C+ I    ++     R R  +       Y  GE      PC  C  T ++  +      
Sbjct: 97  QCELIGAKLHIV----RIREIL------GYGIGEVRTRRPPCSYCGLTKRYI-MNKFAYD 145

Query: 136 LGADVLATGH 145
            G D +ATGH
Sbjct: 146 NGFDAIATGH 155


>gi|146295173|ref|YP_001178944.1| exsB protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|167016419|sp|A4XFR8|QUEC_CALS8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|145408749|gb|ABP65753.1| preQ(0) biosynthesis protein QueC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 34/200 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR VV +SGG+DS+ +   +K  GY+   ++  LY  + +          +++  A++ C
Sbjct: 1   MRAVVVLSGGMDSTTLLYDVKNQGYETYTISF-LYGQKHS----------KELEFAKKTC 49

Query: 81  DTINVSHYVFDY--------EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V H + D             +++  VP    Y   E+    V  NR + F   LS+
Sbjct: 50  ELLKVPHKIVDISFFADLAPSALTKSSWSVP--EGYYTDESMKQTVVPNRNMVF---LSL 104

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRF 190
                  + A       +L+ G       I   CR   +E  +   L      Q+ +L  
Sbjct: 105 ATSYAISLKA------QKLFYGAHAGDHPIYPDCRKEFVEAMKRSILLC--DYQIVELEA 156

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P  D+KKE +  +  ++G+D
Sbjct: 157 PYVDLKKEDILKIGLKLGVD 176


>gi|229081882|ref|ZP_04214374.1| Argininosuccinate synthase [Bacillus cereus Rock4-2]
 gi|228701470|gb|EEL53964.1| Argininosuccinate synthase [Bacillus cereus Rock4-2]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   +    
Sbjct: 15  KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAI 61

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           ++  +  Y+ D +E F +   +    ++   E   P V   +R +    L+ +  Q GA 
Sbjct: 62  SVGAIKSYMIDVQEEFASEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121

Query: 140 VLATG 144
            +A G
Sbjct: 122 AVAHG 126


>gi|289435441|ref|YP_003465313.1| hypothetical protein lse_2080 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171685|emb|CBH28231.1| argG [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           ++V+A SGG+D+SV    L   GY++I                 +CC     G+++   +
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVEAGYEII-----------------ACCLDVGEGKNLDFIK 47

Query: 78  RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               T+  S  Y  D +E F    A+I   A +Y  G+ PL     +R +    L+ V R
Sbjct: 48  EKAITVGASQSYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 107 KEGASAIAHG 116


>gi|257052580|ref|YP_003130413.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940]
 gi|256691343|gb|ACV11680.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 21/127 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVY---DAR 77
           V +A SGG+D++V   LLK + GY DVIGVT+ +               GQ  Y   +A 
Sbjct: 10  VALAFSGGLDTTVCVPLLKEEYGYDDVIGVTVDV---------------GQPDYEFDEAE 54

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + + + HYV D  E F +  +    ++      PL      R V    +  V R+ G
Sbjct: 55  ETAEALGLDHYVVDAREAFADLCLQAVEANADYQGYPLGTA-LARPVIAEGIADVAREQG 113

Query: 138 ADVLATG 144
              LA G
Sbjct: 114 CSALAHG 120


>gi|306822640|ref|ZP_07456018.1| argininosuccinate synthase [Bifidobacterium dentium ATCC 27679]
 gi|309800992|ref|ZP_07695124.1| argininosuccinate synthase [Bifidobacterium dentium JCVIHMP022]
 gi|304554185|gb|EFM42094.1| argininosuccinate synthase [Bifidobacterium dentium ATCC 27679]
 gi|308222528|gb|EFO78808.1| argininosuccinate synthase [Bifidobacterium dentium JCVIHMP022]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C         
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F +   +    + A  E   P V   +R +    L+    Q 
Sbjct: 65  -------VEAYVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 117

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 118 GADTISHG 125


>gi|171742782|ref|ZP_02918589.1| hypothetical protein BIFDEN_01896 [Bifidobacterium dentium ATCC
           27678]
 gi|171278396|gb|EDT46057.1| hypothetical protein BIFDEN_01896 [Bifidobacterium dentium ATCC
           27678]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C         
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F +   +    + A  E   P V   +R +    L+    Q 
Sbjct: 65  -------VEAYVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 117

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 118 GADTISHG 125


>gi|169839355|ref|ZP_02872543.1| hypothetical protein cdivTM_19937 [candidate division TM7
          single-cell isolate TM7a]
          Length = 37

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 29 GGVDSSVVAALLKRDGYDVIGVTLQ 53
          GG+DSSV A LLK+ GY+VIGVTL+
Sbjct: 1  GGIDSSVAALLLKQQGYEVIGVTLK 25


>gi|227532775|ref|ZP_03962824.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189609|gb|EEI69676.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 406

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V L +       + K    A Q     ++  +
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNV------GQPKADFDAIQ-----QKALN 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +   V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 53  VGALDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|307711102|ref|ZP_07647524.1| argininosuccinate synthase [Streptococcus mitis SK321]
 gi|307617064|gb|EFN96242.1| argininosuccinate synthase [Streptococcus mitis SK321]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D Y+V+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YEVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|283456168|ref|YP_003360732.1| argininosuccinate synthase [Bifidobacterium dentium Bd1]
 gi|283102802|gb|ADB09908.1| argG Argininosuccinate synthase [Bifidobacterium dentium Bd1]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV  + LK R G DV+ V+L   Q   S +  K++   C         
Sbjct: 6   RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F +   +    + A  E   P V   +R +    L+    Q 
Sbjct: 59  -------VEAYVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|191639758|ref|YP_001988924.1| argininosuccinate synthase [Lactobacillus casei BL23]
 gi|190714060|emb|CAQ68066.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Lactobacillus casei BL23]
 gi|327383871|gb|AEA55347.1| Argininosuccinate synthase [Lactobacillus casei LC2W]
 gi|327387052|gb|AEA58526.1| Argininosuccinate synthase [Lactobacillus casei BD-II]
          Length = 406

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V L +          G   A  D    ++  +
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNV----------GQPNADFDAIQ-QKALN 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +   V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 53  VGALDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|213864987|ref|ZP_03387106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 41

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           LGAD +ATGHY+R       DGK R  + R +D  +DQSYFL+ 
Sbjct: 2   LGADYIATGHYVRR---ADVDGKSR--LLRGLDSNKDQSYFLYT 40


>gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519]
 gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii]
          Length = 464

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 18/125 (14%)

Query: 22  RVVVAMSGGVDS-SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++VA+SGG DS  ++ AL K + Y      +++Y +    K +G   A +D   A ++C
Sbjct: 21  KILVALSGGPDSVCLLHALKKLETY----YNIKIYAAHLNHKIRG-IEAQKDALYAAKLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D ++V  +V         A+ VP   +YA  E  +   +  R +++  L  V  ++GA  
Sbjct: 76  DELDVPFFV--------KAIDVP---AYAK-EKKMTLEEAARKLRYDMLFEVKNRIGAKK 123

Query: 141 LATGH 145
           +A  H
Sbjct: 124 IAVAH 128


>gi|116496233|ref|YP_807967.1| argininosuccinate synthase [Lactobacillus casei ATCC 334]
 gi|239630684|ref|ZP_04673715.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067835|ref|YP_003789858.1| argininosuccinate synthase [Lactobacillus casei str. Zhang]
 gi|122262369|sp|Q033U7|ASSY_LACC3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116106383|gb|ABJ71525.1| argininosuccinate synthase [Lactobacillus casei ATCC 334]
 gi|239526967|gb|EEQ65968.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440242|gb|ADK20008.1| Argininosuccinate synthase [Lactobacillus casei str. Zhang]
          Length = 406

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V L +          G   A  D    ++  +
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNV----------GQPNADFDAIQ-QKALN 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +   V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 53  VGALDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|297182186|gb|ADI18357.1| argininosuccinate synthase [uncultured actinobacterium
           HF4000_04C13]
          Length = 419

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 19/144 (13%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKR 63
           E + ++S + ++ P D +VV+A SGG+D+SV+   L+ + G +V+  T  L         
Sbjct: 3   EGSEMSSDETNRTPVD-KVVLAYSGGLDTSVILRWLEEEYGCEVVTFTADL--------- 52

Query: 64  KGSCCAGQDVYDARRVCDTINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDC 120
                 G+++  AR   + + VS  Y+ D  E F    + P   A++   GE  L     
Sbjct: 53  ----GQGEELEPARAKAEAMGVSEIYIEDLREEFVRDYVFPMFRANALYEGEY-LLGTSI 107

Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144
            R +    L+ +  + GAD ++ G
Sbjct: 108 ARPLIAKRLVEIADETGADAISHG 131


>gi|87311761|ref|ZP_01093876.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM
           3645]
 gi|87285545|gb|EAQ77464.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM
           3645]
          Length = 276

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 47/209 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R  VA+SGGVDS+VVA              L L  S  A   +       ++ +ARRV  
Sbjct: 19  RCAVALSGGVDSAVVAK----------AAHLALRESAVAVTARSPSVPASEIEEARRVAA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + D +E  +N + +  A        P  C  C +T  +S +  +   + A ++
Sbjct: 69  EIGIRHEIVDTQE-TQNPLYIQNA--------PDRCFHC-KTELYSQIELLVAAIDAPLI 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G        V D G  R  M               A    Q   +R PL +  + K  
Sbjct: 119 ING------ANVDDQGDHRPGM--------------IAAKNHQ---VRSPLIECGLTKAD 155

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKY 228
           VR LA+   L + DK  S   C   +  Y
Sbjct: 156 VRALAQHWNLSVHDKPASP--CLASRIAY 182


>gi|319786829|ref|YP_004146304.1| argininosuccinate synthase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465341|gb|ADV27073.1| argininosuccinate synthase [Pseudoxanthomonas suwonensis 11-1]
          Length = 414

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 3   VSEATRLNSLDLDKNPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +S+A   N      NP      +V+A SGG+D+S     LK  G++V  V          
Sbjct: 1   MSQAASTNPESQSPNPAAASRDIVLAFSGGLDTSFCVPYLKEQGWNVHTVFAD------- 53

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
               G   A +  Y  +R  +    SH   D      N  + PF  +    +   P +  
Sbjct: 54  ---TGGVDAEERAYIEQRAAELGVASHVTIDGGAAIWNGFVKPFVQAGEGYQGQYPLLVS 110

Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144
           +R +     L    +LG + +A G
Sbjct: 111 DRYLIVDAALKRAAELGTNAIAHG 134


>gi|194398639|ref|YP_002036823.1| argininosuccinate synthase [Streptococcus pneumoniae G54]
 gi|194358306|gb|ACF56754.1| argininosuccinate synthase [Streptococcus pneumoniae G54]
          Length = 139

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVCD 81
           V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +   
Sbjct: 6   VILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKALK 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA  
Sbjct: 52  VGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|90421099|ref|ZP_01229001.1| argininosuccinate synthase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334591|gb|EAS48371.1| argininosuccinate synthase [Aurantimonas manganoxydans SI85-9A1]
          Length = 406

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTEYGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E T L      R +    L+ + R+ GA
Sbjct: 56  EMMGIKEIYIEDVREEFCRDFVFPMFRANAVYEGTYLLGTSIARPLISKRLVEIARETGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|167040416|ref|YP_001663401.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300913703|ref|ZP_07131020.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp.
          X561]
 gi|307723282|ref|YP_003903033.1| ATPase [Thermoanaerobacter sp. X513]
 gi|166854656|gb|ABY93065.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|300890388|gb|EFK85533.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp.
          X561]
 gi|307580343|gb|ADN53742.1| ATPase [Thermoanaerobacter sp. X513]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          P   RVVVA+SGG DS V A +LK+ GY+V+G  + L
Sbjct: 45 PPKGRVVVAISGGKDSLVTAYVLKKLGYEVLGFFIDL 81


>gi|188997212|ref|YP_001931463.1| thiamine biosynthesis protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932279|gb|ACD66909.1| thiamine biosynthesis protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 355

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVY--DA 76
           + V   SGG+DS++   L++  G DV+   L  Y      +  +R+G        Y   A
Sbjct: 4   KAVALYSGGLDSTLAIKLVQNQGIDVL--ALHFYTGFCITETKRRRGEKKEDGSHYMNPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +          + D  + + + ++ P    Y  G    PC+DC R   F     + +++
Sbjct: 62  LKYAAKYGFPLEIVDISDGYMDVILNP---KYGYGANINPCIDC-RIYMFKKAKEIMQEV 117

Query: 137 GADVLATGHYIRSR 150
           GAD + +G  +  R
Sbjct: 118 GADFVISGEVLGQR 131


>gi|300709585|ref|YP_003735399.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3]
 gi|299123268|gb|ADJ13607.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3]
          Length = 288

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          V+VA SGGVDSS VAA+     YD +G          A   K       ++ DARRV   
Sbjct: 20 VLVAFSGGVDSSAVAAI----AYDALG------EDAVACTAKSETLPDAELEDARRVAGE 69

Query: 83 INVSHYVFDYEE 94
          I + H + ++ E
Sbjct: 70 IGIRHEIVEFSE 81


>gi|241668630|ref|ZP_04756208.1| hypothetical protein FphipA2_07676 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877163|ref|ZP_05249873.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843184|gb|EET21598.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAG 70
           K ++ V  +SGG+DS +   ++   G  V G+            +  RK  K K      
Sbjct: 4   KQVKAVSLISGGLDSMLATKMMLEQGIHVEGINFFTGFCVEGHTHAIRKQDKEK------ 57

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           Q   ++  V + + +  ++ D  E +++ ++ P    Y  G    PC+DC +        
Sbjct: 58  QKRNNSLWVAEQLGIKLHIIDVIEEYKDVLLNP---KYGYGANMNPCLDC-KIFMVRKAK 113

Query: 131 SVTRQLGADVLATGHYIRSR 150
              ++ G D + TG  I  R
Sbjct: 114 EWAKENGFDFIITGEVIGQR 133


>gi|312128629|ref|YP_003993503.1| exsb protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778648|gb|ADQ08134.1| exsB protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + MR VV +SGG+DS+ +   +K  GY+V  ++  LY  + +          +++  A++
Sbjct: 12  EKMRAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKK 60

Query: 79  VCDTINVSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            C  +++ H + D   + E   +A+  P       Y    T    V  NR +    LLS+
Sbjct: 61  TCSLLSIPHKIVDISFFAELAPSALTTPDWDVPEGYYTDSTMKQTVVPNRNMV---LLSI 117

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRF 190
           +    A  ++ G     +L+ G       I   CR   +E  ++    A       +L  
Sbjct: 118 S---AAYAISLG---AKKLFYGAHAGDHPIYPDCRKEFVEVMKNALYLADYIG--LELEA 169

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P  DMKKE +     E+G++
Sbjct: 170 PYVDMKKEDILRRGLELGVN 189


>gi|110635672|ref|YP_675880.1| argininosuccinate synthase [Mesorhizobium sp. BNC1]
 gi|110286656|gb|ABG64715.1| argininosuccinate synthase [Chelativorans sp. BNC1]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 17/143 (11%)

Query: 6   ATRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKR 63
           ATR +S       KD++ VV+A SGG+D+S++   L+ + G +V+  T  L         
Sbjct: 3   ATRTHSEKTMATHKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL--------- 53

Query: 64  KGSCCAGQDVYDARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCN 121
                 G+++  ARR  + + +   ++ D  E F    + P   + A  E T L      
Sbjct: 54  ----GQGEELEPARRKAEMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSIA 109

Query: 122 RTVKFSDLLSVTRQLGADVLATG 144
           R +    L+ +  + GAD +A G
Sbjct: 110 RPLIAKRLVEIAAETGADAIAHG 132


>gi|161527848|ref|YP_001581674.1| ExsB family protein [Nitrosopumilus maritimus SCM1]
 gi|160339149|gb|ABX12236.1| ExsB family protein [Nitrosopumilus maritimus SCM1]
          Length = 265

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 19/92 (20%)

Query: 7  TRLNSLD---LDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASK 62
          T+LN L+    DKN    +V++A+SGGVDS++VA A  ++ G   I VT           
Sbjct: 2  TKLNELENWFADKN----KVMIALSGGVDSALVAYAAYQKLGDFAIAVTADY-------- 49

Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEE 94
                + +++  A+++C  I ++ +  DY+E
Sbjct: 50 ---KTLSEEELQTAKQICSEIGITQFFLDYDE 78


>gi|159185316|ref|NP_355604.2| argininosuccinate synthase [Agrobacterium tumefaciens str. C58]
 gi|24211505|sp|Q8UC31|ASSY_AGRT5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|159140573|gb|AAK88389.2| argininosuccinate synthase [Agrobacterium tumefaciens str. C58]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)

Query: 18  PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD++ VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  
Sbjct: 4   PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEP 50

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133
           AR+  + + +   +V D  E F    + P   + A  E   L      R +    L+ + 
Sbjct: 51  ARKKAEMLGIKEIFVEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 110

Query: 134 RQLGADVLATG 144
           ++ GAD +A G
Sbjct: 111 KKTGADAIAHG 121


>gi|207092202|ref|ZP_03239989.1| hypothetical protein HpylHP_04230 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 350

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|154149314|ref|YP_001407132.1| thiamine biosynthesis protein:ExsB [Campylobacter hominis ATCC
           BAA-381]
 gi|153805323|gb|ABS52330.1| thiamine biosynthesis protein:ExsB [Campylobacter hominis ATCC
           BAA-381]
          Length = 327

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY------NSRKASKRKGSCCAGQDVY 74
           M+ +   SGG+DS + A ++   G +V  + + +        S   ++R G   A   + 
Sbjct: 1   MKALALFSGGLDSMLAAKIISDMGVEVTALHIDIGFGSKDDKSEILARRAGVAGADFAII 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D R               EE  +N   V F+  Y  G+   PC+DC+  + F   L+   
Sbjct: 61  DVR---------------EEYLKN---VLFSPKYGYGKHFNPCIDCHGFM-FRTALNSLA 101

Query: 135 QLGADVLATGHYIRSR 150
           + GAD + TG  +  R
Sbjct: 102 RFGADFIITGEVLGQR 117


>gi|327440413|dbj|BAK16778.1| argininosuccinate synthase [Solibacillus silvestris StLB046]
          Length = 404

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-R 78
           + +VV+A SGG+D+SV    LK  G+DVI V L +               G+D+   R +
Sbjct: 3   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFIRNK 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 V  Y+ D ++ F     +     +   E   P V   +R +    L+ +  +  
Sbjct: 50  ALQVGAVESYMIDAKDEFAEDFALISLQGHTWYEQKYPLVSALSRPLISKKLVEIANETN 109

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 110 ADAVAHG 116


>gi|322368177|ref|ZP_08042746.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
          [Haladaptatus paucihalophilus DX253]
 gi|320552193|gb|EFW93838.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
          [Haladaptatus paucihalophilus DX253]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          V+VA SGGVDSSVVAA+     +D +G      +   A   K       ++ DA RV D 
Sbjct: 21 VLVAFSGGVDSSVVAAI----AHDALG------DDAVACTAKSETLPEAELGDANRVADE 70

Query: 83 INVSHYVFDYEE 94
          I + H V ++ E
Sbjct: 71 IGIRHVVAEFSE 82


>gi|207108720|ref|ZP_03242882.1| hypothetical protein HpylH_04534 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 178

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|323475431|gb|ADX86037.1| exsB protein [Sulfolobus islandicus REY15A]
          Length = 464

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 29/218 (13%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111
            +R+            R++ + + V       D  +   +A ++                
Sbjct: 282 REREA----------VRKIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170
           E     V     + FS  L++    G D +A+G +   +  Y  ++ +  R++ +     
Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                  +AT   +  ++  P+G++ K  +  L  E+G
Sbjct: 390 -------YATGPNKKVEVLMPVGNLMKHEIVKLGYEIG 420


>gi|317011869|gb|ADU82477.1| hypothetical protein HPLT_00060 [Helicobacter pylori Lithuania75]
          Length = 350

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|225849269|ref|YP_002729433.1| tRNA methyl transferase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644241|gb|ACN99291.1| tRNA methyl transferase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 349

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVY--DARR 78
           + V   SGG+DS++   L++  G D++ V     +   +  +R+G        Y   A +
Sbjct: 4   KAVALYSGGLDSTLAIRLIQNQGIDILAVHFYTGFCITETKRRRGEKKEDGTHYMNPALK 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                     + D  + + + ++ P    Y  G    PC+DC R   F     +  ++GA
Sbjct: 64  YAAKYGFPLEIVDISDGYMDVILNP---KYGYGANINPCIDC-RIYMFKKAKQIMEEIGA 119

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 120 DFIISGEVLGQR 131


>gi|15644646|ref|NP_206815.1| hypothetical protein HP0013 [Helicobacter pylori 26695]
 gi|2313087|gb|AAD07083.1| predicted coding region HP0013 [Helicobacter pylori 26695]
          Length = 350

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|152977001|ref|YP_001376518.1| argininosuccinate synthase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189046380|sp|A7GTR5|ASSY_BACCN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|152025753|gb|ABS23523.1| Argininosuccinate synthase [Bacillus cytotoxicus NVH 391-98]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +VV+A SGG+D+SV    L+   YDVI + L L               G+D+ +   +  
Sbjct: 5   KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGEDLEFVKEKAL 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  Y+ D +E F N   +     +   E   P V   +R +    L+ +    GA 
Sbjct: 52  SVGAIKSYMIDVQEEFMNEYALVALQGHTLYEGKYPLVSALSRPLIAKKLVEIAELEGAS 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|111657060|ref|ZP_01407855.1| hypothetical protein SpneT_02001713 [Streptococcus pneumoniae
           TIGR4]
 gi|85720578|gb|ABC75801.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           TIGR4]
          Length = 139

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +               G+D+ +   +  
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E     V   +R +    L+ +  Q+GA 
Sbjct: 51  KVWAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYLLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|150398257|ref|YP_001328724.1| argininosuccinate synthase [Sinorhizobium medicae WSM419]
 gi|166221022|sp|A6UE09|ASSY_SINMW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|150029772|gb|ABR61889.1| Argininosuccinate synthase [Sinorhizobium medicae WSM419]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVKDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|52549269|gb|AAU83118.1| argininosuccinate synthase [uncultured archaeon GZfos26F9]
          Length = 388

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL---QLYNSRKASKRKGSCCAGQDVYDA 76
           +VV+A SGG+D+SV   LLK   GYD VI VT+   Q  +  K +K +G+          
Sbjct: 3   KVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVTVDVGQPEDDIKEAKERGA---------- 52

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++CD    S+   D +E F    I P   +  + E  +      R +    ++ V R+ 
Sbjct: 53  -KLCD----SYREIDAKEEFVRDYIFPLIKANGSYEGYVLGTAIARPLIAKHVVEVAREE 107

Query: 137 GADVLATG 144
            AD +A G
Sbjct: 108 KADAVAHG 115


>gi|121602703|ref|YP_989608.1| argininosuccinate synthase [Bartonella bacilliformis KC583]
 gi|166219947|sp|A1UUF5|ASSY_BARBK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|120614880|gb|ABM45481.1| argininosuccinate synthase [Bartonella bacilliformis KC583]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  ARR  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQSELGAEVVTFTADL-------------GQGEELESARRKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + ++ GA
Sbjct: 56  EIMGIKEIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAKETGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|289548750|ref|YP_003473738.1| tRNA methyl transferase-like protein [Thermocrinis albus DSM 14484]
 gi|289182367|gb|ADC89611.1| tRNA methyl transferase-like protein [Thermocrinis albus DSM 14484]
          Length = 346

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 111/281 (39%), Gaps = 50/281 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +R V  +SGG+DSS+   LL+  G ++       G  +  +  R   +R+      Q V 
Sbjct: 3   VRAVALLSGGLDSSLAVRLLQDQGVEIKALHFYTGFCITEHKRRLGLRRED---GQQYVN 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A R    + V   + D  + + + ++ P    Y  G+   PCVDC R +       +  
Sbjct: 60  PALRAAAQLGVPIEIVDISKEYIHVLLNP---KYGYGKNVNPCVDC-RIMMLRKAKEIME 115

Query: 135 QLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQ 182
           + G   + TG  +  R         + + ++   + ++ RP+    L       L    +
Sbjct: 116 KEGYQFVVTGEVLGQRPMSQTYQRLMLIEEEADLKGLVLRPLSAKLLPPTIPEKLGWVDR 175

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           ++L  +R   G  +K  + +LA+  GL+   +  +   C++    Y     R    +++E
Sbjct: 176 ERLLGIR---GRGRKVQI-ELAKRYGLEY--QQPAGGCCYLTDETY---AFRFKEALSVE 226

Query: 243 GDIV-----------HLN-----GQILGRHNGIINYTIGQR 267
           G I            HL        I+ RH G +N+  G R
Sbjct: 227 GKITEDDLVLFSVGRHLRLPSGVKVIVARHEGEVNFLQGFR 267


>gi|325294037|ref|YP_004279901.1| Argininosuccinate synthase [Agrobacterium sp. H13-3]
 gi|325061890|gb|ADY65581.1| Argininosuccinate synthase [Agrobacterium sp. H13-3]
          Length = 446

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)

Query: 18  PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD++ VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  
Sbjct: 43  PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEP 89

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133
           AR+  + + +   +V D  E F    + P   + A  E   L      R +    L+ + 
Sbjct: 90  ARKKAELLGIKEIFVEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 149

Query: 134 RQLGADVLATG 144
           ++ GAD +A G
Sbjct: 150 KKTGADAIAHG 160


>gi|167038552|ref|YP_001666130.1| PP-loop domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320116948|ref|YP_004187107.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
 gi|166857386|gb|ABY95794.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC
          33223]
 gi|319930039|gb|ADV80724.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 298

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          P   RVVVA+SGG DS V   +LKR GY+V+G  + L
Sbjct: 45 PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL 81


>gi|256752672|ref|ZP_05493523.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748434|gb|EEU61487.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 298

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          P   RVVVA+SGG DS V   +LKR GY+V+G  + L
Sbjct: 45 PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL 81


>gi|138896319|ref|YP_001126772.1| argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196249942|ref|ZP_03148637.1| Argininosuccinate synthase [Geobacillus sp. G11MC16]
 gi|166219967|sp|A4IRS3|ASSY_GEOTN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|134267832|gb|ABO68027.1| Argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196210456|gb|EDY05220.1| Argininosuccinate synthase [Geobacillus sp. G11MC16]
          Length = 406

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             +      +  YV D ++ F N  A+I   A++   G+ PL     +R +    L+ + 
Sbjct: 47  KEKALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105

Query: 134 RQLGADVLATG 144
              GA  +A G
Sbjct: 106 ELEGAVAVAHG 116


>gi|329116299|ref|ZP_08245016.1| argininosuccinate synthase [Streptococcus parauberis NCFD 2020]
 gi|326906704|gb|EGE53618.1| argininosuccinate synthase [Streptococcus parauberis NCFD 2020]
          Length = 400

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 20/127 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78
           ++++A SGG+D+SV  A LK + YDV+ V + +               G+D   ++D   
Sbjct: 5   KLILAYSGGLDTSVAIAWLK-EKYDVVAVCMDV-------------GEGKDLDFIHDKAL 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           +     V  +V D +++F    ++P   ++A  E   P +   +R +    L+ +  Q  
Sbjct: 51  MVGA--VESFVIDVKDQFAEEFVLPALQAHAFYEQKYPLISALSRPLISQKLVEIAHQTN 108

Query: 138 ADVLATG 144
           A ++A G
Sbjct: 109 ASLIAHG 115


>gi|118576754|ref|YP_876497.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum
          symbiosum A]
 gi|118195275|gb|ABK78193.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum
          symbiosum A]
          Length = 264

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 12/74 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          RV+VA+SGGVDS++VA    R  G   I VT   Y +           A  ++ DA+RVC
Sbjct: 16 RVMVALSGGVDSALVAYAAHRALGDGAIAVTAD-YKT----------LAQDELADAKRVC 64

Query: 81 DTINVSHYVFDYEE 94
            I + H +  Y+E
Sbjct: 65 SEIGMQHMLITYDE 78


>gi|222150070|ref|YP_002551027.1| argininosuccinate synthase [Agrobacterium vitis S4]
 gi|221737052|gb|ACM38015.1| argininosuccinate synthase [Agrobacterium vitis S4]
          Length = 409

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)

Query: 18  PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD++ VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  
Sbjct: 4   PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEP 50

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133
           AR+  + + +   ++ D  E F    + P   + A  E   L      R +    L+ + 
Sbjct: 51  ARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 110

Query: 134 RQLGADVLATG 144
           ++ GAD +A G
Sbjct: 111 KKTGADAIAHG 121


>gi|308183811|ref|YP_003927944.1| hypothetical protein HPSJM_00075 [Helicobacter pylori SJM180]
 gi|308059731|gb|ADO01627.1| hypothetical protein HPSJM_00075 [Helicobacter pylori SJM180]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|254778749|ref|YP_003056854.1| hypothetical protein HELPY_0011 [Helicobacter pylori B38]
 gi|254000660|emb|CAX28569.1| Conserved hypothetical protein; putative signal peptide
           [Helicobacter pylori B38]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|261418229|ref|YP_003251911.1| argininosuccinate synthase [Geobacillus sp. Y412MC61]
 gi|319767811|ref|YP_004133312.1| argininosuccinate synthase [Geobacillus sp. Y412MC52]
 gi|261374686|gb|ACX77429.1| argininosuccinate synthase [Geobacillus sp. Y412MC61]
 gi|317112677|gb|ADU95169.1| argininosuccinate synthase [Geobacillus sp. Y412MC52]
          Length = 406

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             +      +  YV D ++ F N  A+I   A++   G+ PL     +R +    L+ + 
Sbjct: 47  KEKALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105

Query: 134 RQLGADVLATG 144
              GA  +A G
Sbjct: 106 ELEGAVAVAHG 116


>gi|253581434|ref|ZP_04858659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
 gi|251836504|gb|EES65039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS++   ++K  G +VI +               S   G     A +
Sbjct: 3   KKIKALALFSGGLDSALAVKVIKDQGVEVIALNFV------------SHFFGGKNEKAEK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +     D++ R    V  P    Y  G+   PC+DC+ ++ F     +  + GA
Sbjct: 51  MAEQLGIKLEYIDFKSRHTEIVKNPV---YGRGKNMNPCIDCH-SLMFKIAGELLEEYGA 106

Query: 139 DVLATGHYIRSR 150
             + +G  +  R
Sbjct: 107 QFVISGEVLGQR 118


>gi|78776227|ref|YP_392542.1| thiamine biosynthesis protein:ExsB [Sulfurimonas denitrificans DSM
           1251]
 gi|78496767|gb|ABB43307.1| Thiamine biosynthesis protein:ExsB [Sulfurimonas denitrificans DSM
           1251]
          Length = 326

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++   L+   G +V+ V +            G       +   + +C
Sbjct: 1   MKAIALFSGGLDSTLALKLIIDQGIEVLAVNIN----------TGFGSTKDRLEHMQNMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D E  F   V+  F   +  G+   PC+DC+  + F+    V    GA  
Sbjct: 51  AQVGAELKIIDIESEFLQDVL--FDPKHGYGKNFNPCIDCHAKM-FAVAKRVMESEGASF 107

Query: 141 LATGHYIRSR 150
           L +G  +  R
Sbjct: 108 LISGEVLGQR 117


>gi|109948168|ref|YP_665396.1| tRNA methyltransferase [Helicobacter acinonychis str. Sheeba]
 gi|109715389|emb|CAK00397.1| tRNA methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|218681025|ref|ZP_03528922.1| argininosuccinate synthase [Rhizobium etli CIAT 894]
          Length = 407

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|88604066|ref|YP_504244.1| ExsB [Methanospirillum hungatei JF-1]
 gi|110816233|sp|Q2FS65|QUEC_METHJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|88189528|gb|ABD42525.1| preQ(0) biosynthesis protein QueC [Methanospirillum hungatei
          JF-1]
          Length = 220

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
          M+ V  +SGG+DSS +A L K DGYD++ +    Y  R   K +
Sbjct: 1  MKAVCLLSGGMDSSTLACLAKHDGYDILALHFS-YGQRTEEKER 43


>gi|206901533|ref|YP_002251489.1| argininosuccinate synthase [Dictyoglomus thermophilum H-6-12]
 gi|254807520|sp|B5YAL9|ASSY_DICT6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|206740636|gb|ACI19694.1| argininosuccinate synthase [Dictyoglomus thermophilum H-6-12]
          Length = 397

 Score = 39.7 bits (91), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV +  L+++   DVI +T+ +               G ++ + +
Sbjct: 2   KKEKVVLAYSGGLDTSVAIKWLMQKYSLDVITLTVDI-------------GQGINLDEIK 48

Query: 78  RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
              + + V   YV D +E F    I+P   S A  E   P     +R +    L+ + ++
Sbjct: 49  NKAENLGVEKAYVLDLKEEFVKDYIIPAIKSNAMYERVYPLATALSRPLIAKYLVKIAKE 108

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 109 NGAKYVAHG 117


>gi|239828037|ref|YP_002950661.1| argininosuccinate synthase [Geobacillus sp. WCH70]
 gi|259585361|sp|C5D679|ASSY_GEOSW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|239808330|gb|ACS25395.1| argininosuccinate synthase [Geobacillus sp. WCH70]
          Length = 402

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
             +      +  YV D +E F +   +    ++A  E   P V   +R +    L+ +  
Sbjct: 47  KEKALKVGAIKSYVIDVKEEFADEYALIALQAHALYEGKYPLVSALSRPLIAKKLVEIAE 106

Query: 135 QLGADVLATG 144
             GA  +A G
Sbjct: 107 LEGAVAVAHG 116


>gi|328950002|ref|YP_004367337.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450326|gb|AEB11227.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 328

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 29/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA+SGG DS  +  +L R GY+  G+ +QL               G   Y  R    
Sbjct: 49  RVLVAISGGKDSLALWEVLTRLGYEATGLHIQL---------------GIGEYSERAYEV 93

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-------PCVDCNRTVKFSDLLSVTR 134
           T   +       ER    ++V  A SY  G   L        C  C  + ++  +  V R
Sbjct: 94  TTRFAR------ERGLPLIVVDLAESYGLGVPELSLATGRVACSGCGLSKRYL-MNEVAR 146

Query: 135 QLGADVLATGHYI 147
           + G +V+ATGH +
Sbjct: 147 EEGFNVVATGHNL 159


>gi|37526660|ref|NP_930004.1| hypothetical protein plu2770 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786092|emb|CAE15144.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 510

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 15/81 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V +  SGG+DS++V  L K+  +D+  ++  L  S+             D+  A+R 
Sbjct: 228 DLPVSIMFSGGIDSTIVLYLAKKYHHDITAISFGLPGSK-------------DIEIAQRY 274

Query: 80  CDTINVSH--YVFDYEERFRN 98
           C   N+ H  Y F  EE   N
Sbjct: 275 CTENNIKHIIYTFTQEELINN 295


>gi|108562438|ref|YP_626754.1| hypothetical protein HPAG1_0013 [Helicobacter pylori HPAG1]
 gi|107836211|gb|ABF84080.1| argininosuccinate synthase [Helicobacter pylori HPAG1]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|227828356|ref|YP_002830136.1| exsB protein [Sulfolobus islandicus M.14.25]
 gi|229585586|ref|YP_002844088.1| exsB protein [Sulfolobus islandicus M.16.27]
 gi|238620549|ref|YP_002915375.1| exsB protein [Sulfolobus islandicus M.16.4]
 gi|227460152|gb|ACP38838.1| exsB protein [Sulfolobus islandicus M.14.25]
 gi|228020636|gb|ACP56043.1| exsB protein [Sulfolobus islandicus M.16.27]
 gi|238381619|gb|ACR42707.1| exsB protein [Sulfolobus islandicus M.16.4]
 gi|323478152|gb|ADX83390.1| exsB protein [Sulfolobus islandicus HVE10/4]
          Length = 464

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 29/218 (13%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111
            +R+            R++ + + V       D  +   +A ++                
Sbjct: 282 REREA----------VRKIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170
           E     V     + FS  L++    G D +A+G +   +  Y  ++ +  R++ +     
Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                  +AT   +  ++  P+G++ K  +  L  E+G
Sbjct: 390 -------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIG 420


>gi|229579998|ref|YP_002838398.1| exsB protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581341|ref|YP_002839740.1| exsB protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998612|ref|YP_003420380.1| exsB protein [Sulfolobus islandicus L.D.8.5]
 gi|228010714|gb|ACP46476.1| exsB protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012057|gb|ACP47818.1| exsB protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446508|gb|ADB88010.1| exsB protein [Sulfolobus islandicus L.D.8.5]
          Length = 464

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 29/218 (13%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111
            +R+            R++ + + V       D  +   +A ++                
Sbjct: 282 REREA----------VRKIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170
           E     V     + FS  L++    G D +A+G +   +  Y  ++ +  R++ +     
Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                  +AT   +  ++  P+G++ K  +  L  E+G
Sbjct: 390 -------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIG 420


>gi|86359504|ref|YP_471396.1| argininosuccinate synthase [Rhizobium etli CFN 42]
 gi|119361313|sp|Q2K3B7|ASSY_RHIEC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|86283606|gb|ABC92669.1| argininosuccinate synthase protein [Rhizobium etli CFN 42]
          Length = 407

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|297529083|ref|YP_003670358.1| argininosuccinate synthase [Geobacillus sp. C56-T3]
 gi|297252335|gb|ADI25781.1| argininosuccinate synthase [Geobacillus sp. C56-T3]
          Length = 406

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             +      +  YV D ++ F N  A+I   A++   G+ PL     +R +    L+ + 
Sbjct: 47  KEKALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105

Query: 134 RQLGADVLATG 144
              GA  +A G
Sbjct: 106 ELEGAVAVAHG 116


>gi|209551290|ref|YP_002283207.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537046|gb|ACI56981.1| Argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 407

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|15966962|ref|NP_387315.1| argininosuccinate synthase [Sinorhizobium meliloti 1021]
 gi|307301735|ref|ZP_07581494.1| argininosuccinate synthase [Sinorhizobium meliloti BL225C]
 gi|307316240|ref|ZP_07595684.1| argininosuccinate synthase [Sinorhizobium meliloti AK83]
 gi|24211519|sp|Q92L73|ASSY_RHIME RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|15076235|emb|CAC47788.1| Probable argininosuccinate synthase [Sinorhizobium meliloti 1021]
 gi|306898080|gb|EFN28822.1| argininosuccinate synthase [Sinorhizobium meliloti AK83]
 gi|306903433|gb|EFN34022.1| argininosuccinate synthase [Sinorhizobium meliloti BL225C]
          Length = 405

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|289807044|ref|ZP_06537673.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 85

 Score = 39.7 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG 293
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV 
Sbjct: 3   AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVA 61


>gi|52081436|ref|YP_080227.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580]
 gi|52786811|ref|YP_092640.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580]
 gi|319647344|ref|ZP_08001566.1| argininosuccinate synthase [Bacillus sp. BT1B_CT2]
 gi|59799163|sp|Q65G67|ASSY_BACLD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|52004647|gb|AAU24589.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580]
 gi|52349313|gb|AAU41947.1| ArgG [Bacillus licheniformis ATCC 14580]
 gi|317390691|gb|EFV71496.1| argininosuccinate synthase [Bacillus sp. BT1B_CT2]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 23/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77
           +VV+A SGG+D+SV    L+  GYDV+                 +CC     G+D+   +
Sbjct: 6   KVVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKDLAFVQ 48

Query: 78  RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +    +  S+ YV D +E F     +    ++   E   P V   +R +    L+ V  +
Sbjct: 49  QKALQVGASNSYVIDAKEEFAKEFALTALQAHTLYEGKYPLVSALSRPLIAKKLVEVAEK 108

Query: 136 LGADVLATG 144
             A  +A G
Sbjct: 109 ENAQAVAHG 117


>gi|15611082|ref|NP_222733.1| hypothetical protein jhp0011 [Helicobacter pylori J99]
 gi|4154513|gb|AAD05593.1| putative [Helicobacter pylori J99]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|291277103|ref|YP_003516875.1| putative tRNA methyltransferase [Helicobacter mustelae 12198]
 gi|290964297|emb|CBG40147.1| putative tRNA methyltransferase [Helicobacter mustelae 12198]
          Length = 346

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 13/127 (10%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +   SGG+DS +   LLK    +VI +   +       K++    A + +     +CD  
Sbjct: 1   MALFSGGLDSLISMKLLKDQNIEVIALHFNIGFGGNYDKKEYLLNATKQIGVELLICD-- 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +    FD          + FA  Y  G+   PC+DC+  + F        +LGAD + +
Sbjct: 59  -IRQQFFDN---------ILFAPKYGYGKYFNPCIDCHANM-FIQAFDKLLELGADFIIS 107

Query: 144 GHYIRSR 150
           G  +  R
Sbjct: 108 GEVLGQR 114


>gi|208433988|ref|YP_002265654.1| arginino succinate synthase [Helicobacter pylori G27]
 gi|208431917|gb|ACI26788.1| arginino succinate synthase [Helicobacter pylori G27]
          Length = 350

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|254457915|ref|ZP_05071342.1| exsB protein [Campylobacterales bacterium GD 1]
 gi|207085308|gb|EDZ62593.1| exsB protein [Campylobacterales bacterium GD 1]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 85/205 (41%), Gaps = 29/205 (14%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N ++ + +  MSGG+DS++ A ++K  GY++I +    YN R   K++  C         
Sbjct: 2   NEQNKKALCVMSGGMDSTLSAYMMKNSGYEIIALHFN-YNQR-TQKKELEC--------F 51

Query: 77  RRVCDTINVSH-YVFDYE--------ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            ++C+ ++V   Y+ D +             ++ VP          P+  V     +  S
Sbjct: 52  HKICEDLDVKEKYILDLDFFAQIGASALTDKSIEVPIGGIEEG--VPVTYVPFRNGIFLS 109

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              +V  + GA+V++ G        V ++       CR   +   +      T  +   +
Sbjct: 110 MAAAVAEKEGANVISIG--------VVEEDSSGYPDCRESYINSMEQSINLGTKDETNIE 161

Query: 188 LRFPLGDMKKESVRDLAREMGLDIA 212
           ++ PL  +KK  +   + E+ + ++
Sbjct: 162 IKMPLVHLKKSQIVQKSLELNVPLS 186


>gi|34558197|ref|NP_908012.1| tRNA methyltransferase [Wolinella succinogenes DSM 1740]
 gi|34483916|emb|CAE10912.1| TRNA METHYLTRANSFERASE [Wolinella succinogenes]
          Length = 333

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           M+ +   SGG+DS +   L++  G +V+ +   +              A +D  +  +  
Sbjct: 1   MKALALFSGGLDSLLSMKLIQEMGIEVVALHFNI-----------GFGANRDKLEYLQNA 49

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I V   V D +E+F N V+  F   +  G+   PC+DC+  + F   L +    GA 
Sbjct: 50  TAQIGVELRVLDIQEQFFNEVL--FNPVHGYGKYFNPCIDCHANM-FRHALRLLEGEGAS 106

Query: 140 VLATGHYIRSR 150
            + +G  I  R
Sbjct: 107 FIISGEVIGQR 117


>gi|190893772|ref|YP_001980314.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652]
 gi|190699051|gb|ACE93136.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652]
 gi|327188860|gb|EGE56052.1| argininosuccinate synthase protein [Rhizobium etli CNPAF512]
          Length = 407

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|317176819|dbj|BAJ54608.1| argininosuccinate synthase [Helicobacter pylori F16]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|317121384|ref|YP_004101387.1| argininosuccinate synthase [Thermaerobacter marianensis DSM 12885]
 gi|315591364|gb|ADU50660.1| argininosuccinate synthase [Thermaerobacter marianensis DSM 12885]
          Length = 437

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRV 79
           ++V+A SGG+D+SV    LK   GYDVI ++                  G+D+ +  R+ 
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKETYGYDVIALS-------------ADVGEGKDLDFIRRKA 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                V   V D  ERF    ++P   A++   G  PL     +R +    L+   RQ G
Sbjct: 51  LQVGAVEAVVVDARERFARDFVLPALQANALYQGRYPL-SAALSRPLIAQLLVETARQYG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 ATAVAHG 116


>gi|304310384|ref|YP_003809982.1| predicted thiamine biosynthesis protein [gamma proteobacterium
           HdN1]
 gi|301796117|emb|CBL44322.1| predicted thiamine biosynthesis protein [gamma proteobacterium
           HdN1]
          Length = 354

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 23/143 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAGQDV 73
           + +  +SGG+DS +    ++  G  V GV            +  RK  + K      Q  
Sbjct: 6   KAIALVSGGLDSMLAVRAMQEQGIHVEGVNFFTGFCVEGHTHAIRKQDQEK------QKR 59

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLS 131
            +A  V + + +  ++ D  E +++ V+ P    Y  G    PC+DC   +  K + +L+
Sbjct: 60  NNALWVAERLGIKLHIEDISEEYKDVVLNP---RYGYGAHMNPCLDCKIFMVGKANAMLN 116

Query: 132 VTRQL----GADVLATGHYIRSR 150
             R+L    G D + TG  I  R
Sbjct: 117 RARELVADGGFDFIITGEVIGQR 139


>gi|297180161|gb|ADI16383.1| argininosuccinate synthase [uncultured bacterium HF130_12L15]
          Length = 408

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 21/129 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---AR 77
           +VV+A SGG+D+S++   L+ + G +V+  T  L               GQ V D   AR
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL---------------GQGVDDLEPAR 53

Query: 78  RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQ 135
           R  + +     YV D  E F +  + P   + A  E T L      R +    L+ + R+
Sbjct: 54  RKAEMMGAKEIYVEDVREEFVSDFVFPMFRANAVYEGTYLLGTSIARPLISKHLVDIARE 113

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 114 TGADAVAHG 122


>gi|18976645|ref|NP_578002.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892216|gb|AAL80397.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 283

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R++VA+SGG DS+V A +LK+ GY +  + L L     + K         ++Y A++
Sbjct: 28  KDERILVAVSGGKDSAVTAYVLKKLGYKIECLHLNLGIGEYSEK--------SEIY-AKK 78

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE--TPLP-CVDCNRTVKFSDLLSVTRQ 135
            C+ I              N + V     Y  GE  T  P C  C  T ++  +      
Sbjct: 79  QCEFIGAP----------LNIIRVKELLGYGIGEVRTSRPTCSYCGLTKRYI-MNKFAYD 127

Query: 136 LGADVLATGH 145
            G D +ATGH
Sbjct: 128 NGFDAVATGH 137


>gi|163784843|ref|ZP_02179624.1| hypothetical protein HG1285_07966 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879890|gb|EDP73613.1| hypothetical protein HG1285_07966 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 341

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVY--DA 76
           + V   SGG+DS++   L++  G +VI   L  Y      +  +R+G        Y   A
Sbjct: 4   KAVALYSGGLDSTLAIKLIQEQGIEVI--ALHFYTGFCITETKRRRGEKKEDGSHYMNPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +       S  + D  E + + +  P    Y  G    PC+DC R   +        ++
Sbjct: 62  LKYAAKYGFSLEIIDISEGYFDIIQNP---KYGYGSNINPCIDC-RAYMYKHAKKYMEEI 117

Query: 137 GADVLATGHYIRSR 150
           GAD + +G  +  R
Sbjct: 118 GADFIISGEVLNQR 131


>gi|170755404|ref|YP_001779793.1| hypothetical protein CLD_0620 [Clostridium botulinum B1 str. Okra]
 gi|169120616|gb|ACA44452.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 240

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS V+  LLK+      + +D+I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSVVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC  INV  Y+  Y+   +  V       +   +   PC  C   ++   L + +++
Sbjct: 70  LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 120 LGCNKIALGHH 130


>gi|322418448|ref|YP_004197671.1| NAD+ synthetase [Geobacter sp. M18]
 gi|320124835|gb|ADW12395.1| NAD+ synthetase [Geobacter sp. M18]
          Length = 329

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 32/233 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  R+VVA+SGG+DSSV AAL  R      VIG+ +   +S + +       AG    + 
Sbjct: 36  KRGRIVVALSGGIDSSVTAALSVRALGSSRVIGLEMPERHSARETLALSGKVAGSLGIET 95

Query: 77  RRVCDTINVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVT 133
            RV D   V   V  Y E++ NAV  +VP   +Y  G T    +       +F+    VT
Sbjct: 96  -RVEDISGVLQSVGFY-EKYDNAVRSVVP---AYGEGWTSKIVISGGADKPRFTSFYLVT 150

Query: 134 RQLGA-------------DVLATGHY---IRSRL-YVGDDGKRRRIMCRPMDLERDQSYF 176
           R   A             +++A  ++   IR  L Y   D     +   P  LE DQ +F
Sbjct: 151 RDADAVQSTVRLPLQPYLEIVAATNFKQRIRKMLEYYYADRLNFAVAGTPNRLEYDQGFF 210

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGL--DIADKSDSQDICFVQQGK 227
           +         D++ P+  + K  V  LA  +G+  +I  +  + D   + QG+
Sbjct: 211 V--KLGDGAADIK-PIAHLYKSQVYQLAEFLGIPEEIRSRKPTTDTYSLAQGQ 260


>gi|217031756|ref|ZP_03437260.1| hypothetical protein HPB128_155g69 [Helicobacter pylori B128]
 gi|216946603|gb|EEC25203.1| hypothetical protein HPB128_155g69 [Helicobacter pylori B128]
          Length = 191

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|153940664|ref|YP_001389528.1| hypothetical protein CLI_0220 [Clostridium botulinum F str.
           Langeland]
 gi|152936560|gb|ABS42058.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|295317628|gb|ADF98005.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 240

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS V+  LLK+      + +D+I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSVVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC  INV  Y+  Y+   +  V       +   +   PC  C   ++   L + +++
Sbjct: 70  LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 120 LGCNKIALGHH 130


>gi|317013437|gb|ADU80873.1| hypothetical protein HPGAM_00065 [Helicobacter pylori Gambia94/24]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|170758613|ref|YP_001785494.1| hypothetical protein CLK_3340 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405602|gb|ACA54013.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 240

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS V+  LLK+      + +D+I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC  INV  Y+  Y+   +  V       +   +   PC  C   ++   L + +++
Sbjct: 70  LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 120 LGCNKIALGHH 130


>gi|307636697|gb|ADN79147.1| tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 908]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|254490475|ref|ZP_05103661.1| tRNA methyl transferase [Methylophaga thiooxidans DMS010]
 gi|224464219|gb|EEF80482.1| tRNA methyl transferase [Methylophaga thiooxydans DMS010]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 19/142 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAG 70
           +  + V  +SGG+DS +   +L+  G +V G+            +  R   K K      
Sbjct: 3   RQHKAVALISGGLDSMLAVRVLQEQGIEVEGINFYTGFCVEGHTHAIRNHDKDK------ 56

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSD 128
           Q   +A  V + +++  ++ D  E +++ ++ P    +  G    PC+DC   +  K  +
Sbjct: 57  QKRNNALWVAEQLDIKLHIVDVIEEYKDVLLNP---KHGYGANMNPCLDCKIFMVGKAVE 113

Query: 129 LLSVTRQLGADVLATGHYIRSR 150
            +    Q G D + TG  I  R
Sbjct: 114 WVKEHHQDGFDFIVTGEVIGQR 135


>gi|168177499|ref|ZP_02612163.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|168182225|ref|ZP_02616889.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226947389|ref|YP_002802480.1| hypothetical protein CLM_0209 [Clostridium botulinum A2 str. Kyoto]
 gi|237793484|ref|YP_002861036.1| hypothetical protein CLJ_B0204 [Clostridium botulinum Ba4 str. 657]
 gi|182671105|gb|EDT83079.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182674626|gb|EDT86587.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226842841|gb|ACO85507.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261836|gb|ACQ52869.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 240

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS V+  LLK+      + +D+I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC  INV  Y+  Y+   +  V       +   +   PC  C   ++   L + +++
Sbjct: 70  LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 120 LGCNKIALGHH 130


>gi|52550452|gb|AAU84301.1| argininosuccinate synthase [uncultured archaeon GZfos9D1]
          Length = 388

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL---QLYNSRKASKRKGSCCAGQDVYDA 76
           +VV+A SGG+D+SV   LLK   GYD VI VT+   Q  +  K +K +G+          
Sbjct: 3   KVVLAYSGGLDTSVCIPLLKEHYGYDNVIAVTVDVGQPEDDIKEAKERGA---------- 52

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++CD    S+   D +E F    I P   +    E  +      R +    ++ V R+ 
Sbjct: 53  -KLCD----SYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREE 107

Query: 137 GADVLATG 144
            AD +A G
Sbjct: 108 NADAVAHG 115


>gi|289548315|ref|YP_003473303.1| argininosuccinate synthase [Thermocrinis albus DSM 14484]
 gi|289181932|gb|ADC89176.1| argininosuccinate synthase [Thermocrinis albus DSM 14484]
          Length = 398

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           RV++A SGG+D+SV+   L   GY+VI  T                  G+++ +  ++  
Sbjct: 4   RVILAYSGGLDTSVIVRWLTERGYEVITYT-------------ADVGQGEELSEIPQKAK 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGAD 139
           D+  V   V D +E F     +P   + A  E   P     +R +  S L+   ++L A 
Sbjct: 51  DSGAVEAIVEDLKEEFARNYCLPTLRALALYEGKYPLTASLSRPLIASKLVEYAQKLSAH 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 YVAHG 115


>gi|325995283|gb|ADZ50688.1| tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2018]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|308174628|ref|YP_003921333.1| argininosuccinate synthase [Bacillus amyloliquefaciens DSM 7]
 gi|307607492|emb|CBI43863.1| argininosuccinate synthase [Bacillus amyloliquefaciens DSM 7]
 gi|328554554|gb|AEB25046.1| argininosuccinate synthase [Bacillus amyloliquefaciens TA208]
 gi|328912958|gb|AEB64554.1| argininosuccinate synthase [Bacillus amyloliquefaciens LL3]
          Length = 403

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76
           +VV+A SGG+D+SV    L+  GYDV+                 +CC     G+D+ +  
Sbjct: 6   KVVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKDLAFVQ 48

Query: 77  RRVCDTINVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           ++  +   V+ YV D +E F    A+I   A +   G+ PL     +R +    L+ V  
Sbjct: 49  QKALEVGAVNSYVIDAKEEFAREYALISMQAHTMYEGKYPLVSA-LSRPLIAKKLVEVAE 107

Query: 135 QLGADVLATG 144
           +  A  +A G
Sbjct: 108 KENAVAVAHG 117


>gi|322804435|emb|CBZ01985.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 240

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS V+  LLK+      + +D+I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC  INV  Y+  Y+   +  V       +   +   PC  C   ++   L + +++
Sbjct: 70  LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 120 LGCNKIALGHH 130


>gi|320531700|ref|ZP_08032639.1| argininosuccinate synthase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136080|gb|EFW28089.1| argininosuccinate synthase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 407

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + +  G +V+ V + +               G+D+   R R 
Sbjct: 7   RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F N   +P   + A  E   P V   +R V    L+   R+ GA
Sbjct: 55  LDCGAVEAYVTDARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 114

Query: 139 DVLATG 144
             +A G
Sbjct: 115 HTVAHG 120


>gi|146304252|ref|YP_001191568.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702502|gb|ABP95644.1| PP-loop domain protein [Metallosphaera sedula DSM 5348]
          Length = 318

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV VA+SGG DS+    V+A L  + G++V+G+ + L   R      G+  +      A 
Sbjct: 49  RVAVAVSGGKDSTTLLHVLAKLSGKMGFEVVGINIDLGIDR------GTKYSSLSTEFAV 102

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  + + V + V   +E+        F    A  +   P       VK   L    ++LG
Sbjct: 103 KNFEKLGVEYKVVSLKEKH------GFTIDEAKVKIKRPVCSTCGLVKRYVLEEAAQELG 156

Query: 138 ADVLATGH 145
           ADVLATGH
Sbjct: 157 ADVLATGH 164


>gi|325295219|ref|YP_004281733.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065667|gb|ADY73674.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 402

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL------QLYNSRKASKRKGSCCAGQDVYD 75
           RVV+A SGG+D+SV+   L   G++VI  T       +L    + +K+ G+  A  D   
Sbjct: 4   RVVLAYSGGLDTSVIVRWLADRGFEVITYTADVGQGEELGEIEEKAKKAGAVEAIID--- 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                          D +E F     +P   + A  E   P +   +R +    L+ V  
Sbjct: 61  ---------------DIKEEFAREYCLPLMRAGALYEGKYPLLSALSRPLIAKKLVEVAH 105

Query: 135 QLGADVLATG 144
           Q GAD +A G
Sbjct: 106 QKGADYVAHG 115


>gi|210134212|ref|YP_002300651.1| argininosuccinate synthase [Helicobacter pylori P12]
 gi|210132180|gb|ACJ07171.1| argininosuccinate synthase [Helicobacter pylori P12]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|301063542|ref|ZP_07204068.1| protein ExsB [delta proteobacterium NaphS2]
 gi|300442351|gb|EFK06590.1| protein ExsB [delta proteobacterium NaphS2]
          Length = 228

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV +SGG+DS+ VAA+   +GYDV  +T + Y  R A + K           A +V  
Sbjct: 7   KAVVLLSGGLDSTTVAAIACSEGYDVFALTFR-YGQRHAVELKA----------AEKVAH 55

Query: 82  TINVS-HYVFDYEER------FRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            + ++ H + D + R        + + VP    +  +  E P+  V    T+  S  L+ 
Sbjct: 56  NLGLTEHLIVDLDLRKIGGSALTDHIDVPKRRGAELSEEEIPVTYVPARNTIFLSYALAW 115

Query: 133 TRQLGA 138
              LGA
Sbjct: 116 AEVLGA 121


>gi|298737103|ref|YP_003729633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
 gi|298356297|emb|CBI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
          Length = 350

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|297569716|ref|YP_003691060.1| NAD+ synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925631|gb|ADH86441.1| NAD+ synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 336

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 57/273 (20%)

Query: 19  KDMR---VVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +D+R   VVVA+SGGVDSSV AAL  R      V G+ L   +S   S ++G        
Sbjct: 32  RDLRRRGVVVALSGGVDSSVCAALAVRALGAGKVYGLMLPERDSSPLSLKRG-------- 83

Query: 74  YDARRVCDTINVSHYVFDYEERF--------RNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              ++V D + + + V D             R+  I      Y  G      +   R   
Sbjct: 84  ---KQVADCLGIDYLVEDIGPTLDSLGCYLRRDEAIRRLFPEYGPGWKSKIAIAGGRDGS 140

Query: 126 FSDLLSVTRQLGADVL--------------ATGHYIRSRL---YVGDDGKRRRIMCRPMD 168
           F+    V +  G ++L              AT    R+R    Y   D     ++  P  
Sbjct: 141 FNYFNLVVQTPGGELLEKRMPPREYLQIVAATNFKQRTRKMIEYFHADRLNYAVIGTPNR 200

Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL--DIADKSDSQDICFVQQG 226
           LE DQ +F+         DL+ P+  + K  V  LA  + +  +I+  + + D   ++QG
Sbjct: 201 LEYDQGFFV--KNGDGAADLK-PIAHLYKTQVYALASHLRIPEEISSAAPTTDTYSLEQG 257

Query: 227 K---YFDV--------VKRINAGIALEGDIVHL 248
           +   YF +        +   N G++ E    HL
Sbjct: 258 QDEFYFSLSYDKMDVALWSFNHGVSEEALASHL 290


>gi|325067193|ref|ZP_08125866.1| argininosuccinate synthase [Actinomyces oris K20]
          Length = 407

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + +  G +V+ V + +               G+D+   R R 
Sbjct: 7   RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F N   +P   + A  E   P V   +R V    L+   R+ GA
Sbjct: 55  LDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 114

Query: 139 DVLATG 144
             +A G
Sbjct: 115 HTVAHG 120


>gi|323488963|ref|ZP_08094200.1| argininosuccinate synthase [Planococcus donghaensis MPA1U2]
 gi|323397355|gb|EGA90164.1| argininosuccinate synthase [Planococcus donghaensis MPA1U2]
          Length = 410

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80
           ++V+A SGG+D+SV    LK +GYDV+ V L +               G+D+ +  ++  
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKGEGYDVVAVCLDI-------------GEGKDLDFIKQKAL 50

Query: 81  DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               V  Y+ D  + F +  A+I   A +   G+ PL     +R +    L+ +    G+
Sbjct: 51  QVGAVESYMIDARDEFADEYALISMQAHTLYEGKYPL-VSALSRPLISKKLVEIAEATGS 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 SAVAHG 115


>gi|154687066|ref|YP_001422227.1| argininosuccinate synthase [Bacillus amyloliquefaciens FZB42]
 gi|166219946|sp|A7Z7M0|ASSY_BACA2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|154352917|gb|ABS74996.1| ArgG [Bacillus amyloliquefaciens FZB42]
          Length = 403

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76
           +VV+A SGG+D+SV    L+  GYDV+                 +CC     G+D+ +  
Sbjct: 6   KVVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKDLAFVQ 48

Query: 77  RRVCDTINVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           ++  +   V+ YV D +E F    A+I   A +   G+ PL     +R +    L+ V  
Sbjct: 49  QKALEVGAVNSYVIDAKEEFAREYALISMQAHTMYEGKYPLVSA-LSRPLIAKKLVEVAE 107

Query: 135 QLGADVLATG 144
           +  A  +A G
Sbjct: 108 KENAVAVAHG 117


>gi|148378171|ref|YP_001252712.1| hypothetical protein CBO0165 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931125|ref|YP_001382571.1| hypothetical protein CLB_0202 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937579|ref|YP_001386124.1| hypothetical protein CLC_0213 [Clostridium botulinum A str. Hall]
 gi|148287655|emb|CAL81720.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927169|gb|ABS32669.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933493|gb|ABS38992.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 240

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS V+  LLK+      + +D+I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC  INV  Y+  Y+   +  V       +   +   PC  C   ++   L + +++
Sbjct: 70  LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKK 119

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 120 LGCNKIALGHH 130


>gi|237756601|ref|ZP_04585118.1| thiamine biosynthesis protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691232|gb|EEP60323.1| thiamine biosynthesis protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 355

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 99/251 (39%), Gaps = 27/251 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVY--DA 76
           + V   SGG+DS++   L++  G DV+   L  Y      +  +R+G        Y   A
Sbjct: 4   KAVALYSGGLDSTLAIKLVQNQGIDVL--ALHFYTGFCITETKRRRGEKKEDGSHYINPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +          + D  + + + ++ P    +  G    PC+DC R   F     + +++
Sbjct: 62  LKFAAKYGFPLEIVDISDGYMDVILNP---KFGYGANINPCIDC-RIYMFKKAKEIMQEV 117

Query: 137 GADVLATGHYIRSRL---------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           GAD + +G  +  R           +  +     ++ RP+  ++                
Sbjct: 118 GADFVISGEVLGQRPKSQKSIPLKIIEREAGLEGLILRPLSAKKLPPTIPEINGWVDREK 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           L   +G  +K  + +LA+E+G+D  + S +   C++    Y     +    +A+EG I  
Sbjct: 178 LEGIVGRSRKRQI-ELAKELGIDEYE-SPAGGCCYLTDENY---AYKYKETMAVEGKITQ 232

Query: 248 --LNGQILGRH 256
             L    +GRH
Sbjct: 233 EDLVLFTVGRH 243


>gi|326771631|ref|ZP_08230916.1| argininosuccinate synthase [Actinomyces viscosus C505]
 gi|326637764|gb|EGE38665.1| argininosuccinate synthase [Actinomyces viscosus C505]
          Length = 410

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + +  G +V+ V + +               G+D+   R R 
Sbjct: 10  RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 57

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F N   +P   + A  E   P V   +R V    L+   R+ GA
Sbjct: 58  LDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 117

Query: 139 DVLATG 144
             +A G
Sbjct: 118 HTVAHG 123


>gi|317010295|gb|ADU84042.1| tRNA methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|315604497|ref|ZP_07879561.1| argininosuccinate synthase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313781|gb|EFU61834.1| argininosuccinate synthase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 406

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + ++ G +V+ V + +               G+D+   R R 
Sbjct: 6   RVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQ------------GGEDLEVIRQRA 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F +   +P   + A  E   P V   +R V    L+   R+ GA
Sbjct: 54  LDCGAVEAYVADARDEFASEYCMPALKANALYEGKYPLVSALSRPVIVKHLVKAAREFGA 113

Query: 139 DVLATG 144
             +A G
Sbjct: 114 TTVAHG 119


>gi|315452550|ref|YP_004072820.1| Arginino succinate synthase [Helicobacter felis ATCC 49179]
 gi|315131602|emb|CBY82230.1| Arginino succinate synthase [Helicobacter felis ATCC 49179]
          Length = 352

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +VI +   +       KR+    A   V     +C
Sbjct: 1   MKALALFSGGLDSLLSMHLVASQGIEVIALHFNIGFGGNKDKREYLEKASAQVGAQLLLC 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D           +E+F + V+  F   Y  G+   PC+DC+  + F        +L AD 
Sbjct: 61  DI----------QEQFFDEVL--FKPKYGYGKYFNPCIDCHANM-FRQAFYKLLELQADF 107

Query: 141 LATGHYIRSR 150
           + +G  +  R
Sbjct: 108 VISGEVLGQR 117


>gi|167042206|gb|ABZ06938.1| putative tRNA methyl transferase [uncultured marine crenarchaeote
           HF4000_ANIW93I24]
          Length = 268

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 47/195 (24%)

Query: 23  VVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VA+SGGVDS++VA +   + G   I VT                 A +++  A+++  
Sbjct: 19  VLVALSGGVDSALVAYSAYAKLGKSAISVTADY-----------KTLAQEELEYAKKISL 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H V +Y E          A+          C  C R+     LL V ++   D++
Sbjct: 68  EIGIKHIVIEYNE---------LANESFVKNDNNRCFYC-RSELSEHLLQVAKEFETDMI 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--KES 199
             G  I     +GD         RP  L   Q+             +R PL + K  K+ 
Sbjct: 118 VDGTNIDD---LGD--------YRPGILALHQN------------GIRSPLAETKFSKKM 154

Query: 200 VRDLAREMGLDIADK 214
           VR++A+ +GL + DK
Sbjct: 155 VREVAKNVGLSVYDK 169


>gi|56421292|ref|YP_148610.1| argininosuccinate synthase [Geobacillus kaustophilus HTA426]
 gi|61211378|sp|Q5KW94|ASSY_GEOKA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56381134|dbj|BAD77042.1| argininosuccinate synthase(citrulline--aspartate ligase)
           [Geobacillus kaustophilus HTA426]
          Length = 406

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75
           NPK   +V+A SGG+D+SV    L+  GYDVI   L L               G+D+ + 
Sbjct: 3   NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46

Query: 76  ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             +      +  YV D ++ F N  A+I   A++   G+ PL     +R +    L+ + 
Sbjct: 47  KEKALKVGAMKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105

Query: 134 RQLGADVLATG 144
              GA  +A G
Sbjct: 106 ELEGAVAVAHG 116


>gi|240102429|ref|YP_002958738.1| PP-loop ATPase, MJ1638-related [Thermococcus gammatolerans EJ3]
 gi|239909983|gb|ACS32874.1| PP-loop ATPase, MJ1638-related [Thermococcus gammatolerans EJ3]
          Length = 245

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 27/140 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +K P  +RV +A S G DS+    +L+  G++V+ +T +L                 D
Sbjct: 48  DFEKTPTGVRVALAFSAGSDSTATLKILRWAGFEVVPITAKLPQ--------------MD 93

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLS 131
               ++V    ++   V  YEE  R  +           E   P C  C+  V    +  
Sbjct: 94  ERTLQKVRSENSIFVVVPRYEETMRELI-----------EKGAPICGRCHSMV-MEAVER 141

Query: 132 VTRQLGADVLATGHYIRSRL 151
             R+LG  +LATG  + S L
Sbjct: 142 KARELGVRILATGDMLSSGL 161


>gi|167628090|ref|YP_001678590.1| hypothetical protein Fphi_1863 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598091|gb|ABZ88089.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 421

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAG 70
           K ++ V  +SGG+DS +   ++   G  V G+            +  RK  K K      
Sbjct: 4   KQVKAVSLISGGLDSMLATKMMLEQGIHVEGINFFTGFCVEGHTHAIRKQDKEK------ 57

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           Q   ++  V + + +  ++ D  E +++ ++ P    Y  G    PC+DC +        
Sbjct: 58  QKRNNSLWVAEQLGIKLHIIDVIEEYKDVLLNP---KYGYGANMNPCLDC-KIFMVRKAK 113

Query: 131 SVTRQLGADVLATGHYIRSR 150
               + G D + TG  I  R
Sbjct: 114 EWAEENGFDFIITGEVIGQR 133


>gi|261837468|gb|ACX97234.1| hypothetical protein KHP_0011 [Helicobacter pylori 51]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|18976579|ref|NP_577936.1| argininosuccinate synthase [Pyrococcus furiosus DSM 3638]
 gi|24211504|sp|Q8U484|ASSY_PYRFU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|18892142|gb|AAL80331.1| argininosuccinate synthase [Pyrococcus furiosus DSM 3638]
          Length = 410

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           MR+V+A SGG+D+SV+  L++   G +VI VT+ +       K +             + 
Sbjct: 1   MRIVLAYSGGLDTSVILKLMQEKLGAEVITVTVDVGQKDDFEKIE------------EKA 48

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGA 138
                V HY  D +E F    +     + A  E   P      R +    L+ V ++ GA
Sbjct: 49  YKFGAVKHYYIDAKEEFAENYVCKAIKANALYENAYPLSTALARPLIVEKLVEVAKKEGA 108

Query: 139 DVLATG 144
            ++A G
Sbjct: 109 GIIAHG 114


>gi|329944484|ref|ZP_08292649.1| argininosuccinate synthase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530249|gb|EGF57128.1| argininosuccinate synthase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 407

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + +  G +V+ V + +               G+D+   R R 
Sbjct: 7   RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F N   +P   + A  E   P V   +R V    L+   R+ GA
Sbjct: 55  LDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 114

Query: 139 DVLATG 144
             +A G
Sbjct: 115 HTVAHG 120


>gi|210620567|ref|ZP_03292115.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275]
 gi|210155281|gb|EEA86287.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275]
          Length = 430

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   +  +++  +  
Sbjct: 135 DKKVLLALSGGVDSSVVAALLIK----AIGKQLVCVHVNHGLMRKGESESVVEIFKNQMD 190

Query: 80  CDTINVSHYVFDYEERF 96
            + I V     D EERF
Sbjct: 191 ANLIYV-----DAEERF 202


>gi|261838884|gb|ACX98649.1| argininosuccinate synthase [Helicobacter pylori 52]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|317181301|dbj|BAJ59085.1| argininosuccinate synthase [Helicobacter pylori F57]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|313899439|ref|ZP_07832949.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
 gi|312955727|gb|EFR37385.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
          Length = 430

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   +  +V+  + 
Sbjct: 134 KDRKVLLALSGGVDSSVVAALLLK----AIGKQLYCVHVNHGLMRKGESESVIEVFKNQM 189

Query: 79  VCDTINVSHYVFDYEERF 96
             + I V     D  ERF
Sbjct: 190 DANLIYV-----DASERF 202


>gi|308182199|ref|YP_003926326.1| hypothetical protein HPPC_00065 [Helicobacter pylori PeCan4]
 gi|308064384|gb|ADO06276.1| hypothetical protein HPPC_00065 [Helicobacter pylori PeCan4]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|317008691|gb|ADU79271.1| hypothetical protein HPIN_00055 [Helicobacter pylori India7]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|315586002|gb|ADU40383.1| tRNA methyltransferase [Helicobacter pylori 35A]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|237738366|ref|ZP_04568847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420246|gb|EEO35293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 333

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 16/132 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  R +   SGG+DS++   ++K  G DVI +               S   G     A +
Sbjct: 3   KKRRALALFSGGLDSALAIKVIKDQGIDVIALNFV------------SHFFGGKNEKAEK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +      +E+R    V  P    Y  G+   PC+DC+ ++ F     +  +  A
Sbjct: 51  MAEQLGIKVEYVHFEKRHTEVVKNPV---YGRGKNMNPCIDCH-SLMFKVAGELLEKYDA 106

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 107 DFVISGEVLGQR 118


>gi|257783999|ref|YP_003179216.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469]
 gi|257472506|gb|ACV50625.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469]
          Length = 529

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++A+SGGVDSSVVAAL+ R     IG  L          RKG     + V+     C 
Sbjct: 221 RVILALSGGVDSSVVAALVHR----AIGDQLTCVFVNHGMLRKGEPEMVEQVF-----CK 271

Query: 82  TINVSHYVFDYEERF 96
             NV       EER+
Sbjct: 272 QFNVPLIHVHAEERY 286


>gi|52352404|gb|AAU43693.1| argininosuccinate synthase [uncultured archaeon GZfos26D8]
          Length = 388

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV   LLK   GYD VI VT+ +               G D+ +A+  
Sbjct: 3   KVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVTVDV------------GQPGDDIKEAKER 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              ++ S+   D +E F    I P   +    E  +      R +    ++ V R+  AD
Sbjct: 51  GAKLSDSYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREEKAD 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 AVAHG 115


>gi|73669859|ref|YP_305874.1| argininosuccinate synthase [Methanosarcina barkeri str. Fusaro]
 gi|119361288|sp|Q469Z8|ASSY_METBF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|72397021|gb|AAZ71294.1| argininosuccinate synthase [Methanosarcina barkeri str. Fusaro]
          Length = 395

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V +A SGG+D+SV   +LK   GYD V+ +++ +    +  KR           DA+  
Sbjct: 4   KVALAYSGGLDTSVCIPILKEKYGYDEVVTISVDVGQPEEEIKRA----------DAK-- 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I+  HY  D +E F    + P   +  + E  +      R +    ++   R+ GA 
Sbjct: 52  AEKISNKHYTIDAKEEFVKDYVFPLIKANGSYEGYVMGTSIARPLIAKKVVEAARKEGAV 111

Query: 140 VLATG 144
            LA G
Sbjct: 112 ALAHG 116


>gi|188526823|ref|YP_001909510.1| argininosuccinate synthase [Helicobacter pylori Shi470]
 gi|188143063|gb|ACD47480.1| argininosuccinate synthase [Helicobacter pylori Shi470]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|150021282|ref|YP_001306636.1| NAD synthetase [Thermosipho melanesiensis BI429]
 gi|149793803|gb|ABR31251.1| NAD+ synthetase [Thermosipho melanesiensis BI429]
          Length = 574

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 66/129 (51%), Gaps = 20/129 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTL-QLYNSRKASKRKGSCCAGQDVYDA 76
           +VV+ +SGG+DSS+VAA+    L +D  +V+G+ +  +Y+S               + DA
Sbjct: 317 KVVIGLSGGMDSSLVAAIAVEALGKD--NVLGILMPSMYSS------------SHSIEDA 362

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + + + + + +Y+   E  +  + +      ++  +  +   +    ++ + L++++ + 
Sbjct: 363 KNLAENLGIKYYIIKIENIYY-SFVNELKEIFSNTKEDITEENLQARIRGTILMAISNKF 421

Query: 137 GADVLATGH 145
           G  VLATG+
Sbjct: 422 GHIVLATGN 430


>gi|114571455|ref|YP_758135.1| argininosuccinate synthase [Maricaulis maris MCS10]
 gi|119361286|sp|Q0AKJ6|ASSY_MARMM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|114341917|gb|ABI67197.1| argininosuccinate synthase [Maricaulis maris MCS10]
          Length = 410

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+ D YD   VT                  G+++  ARR  +
Sbjct: 9   KVVLAYSGGLDTSVILKWLQ-DAYDAEVVTFT-----------ADLGQGEELEPARRKAE 56

Query: 82  TINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              VS  ++ D  E F    + P   + A  E   L      R +    L+ +    GAD
Sbjct: 57  AAGVSEIFIEDLREEFVRDFVYPMVRANAVYEGLYLLGTSIARPLIAKRLVEIAHATGAD 116

Query: 140 VLATG 144
            +A G
Sbjct: 117 AVAHG 121


>gi|260439257|ref|ZP_05793073.1| sensory box protein [Butyrivibrio crossotus DSM 2876]
 gi|292808271|gb|EFF67476.1| sensory box protein [Butyrivibrio crossotus DSM 2876]
          Length = 372

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 31/139 (22%)

Query: 215 SDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM 274
           S   D+CF  +   +D VK++   +A+EGDI+ +NG  L         ++ Q   +   +
Sbjct: 216 SKDYDVCFGVENATWDGVKKVKEKVAIEGDIIKINGGTL---------SLNQLEAMLNTI 266

Query: 275 GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE----------DAVVDGF 324
             PL + ++D+++       R   E H+++ R +  +G  +F             ++D F
Sbjct: 267 --PLEITFVDEDNIN-----RYFNEGHKVFKRSMTAIGREVFSCHPPKVSIMVRRIIDEF 319

Query: 325 KCFVKIRSSQDPVPVFVQR 343
           +       S D +PV++++
Sbjct: 320 R-----NGSLDSMPVWMEK 333


>gi|330718658|ref|ZP_08313258.1| argininosuccinate synthase [Leuconostoc fallax KCTC 3537]
          Length = 417

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 17/129 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GYDVI V L +               G+D+   +    
Sbjct: 12  KLVLAYSGGLDTSVAIPWLKEKGYDVIAVVLDVGQH------------GKDMQMIQEKAL 59

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           T+  +   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A 
Sbjct: 60  TVGAIQSIVIDAKLEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENEAT 119

Query: 140 VLA---TGH 145
            +A   TGH
Sbjct: 120 TIAHGSTGH 128


>gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
 gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
          Length = 427

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 25/128 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKR----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           R++VA+SGGVDSSV+  LL R      + +   T+  +  RK SK        ++V    
Sbjct: 23  RILVAVSGGVDSSVLLNLLARVQEYFKFSIFCATVD-HGIRKESK--------EEVKFVY 73

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +  ++NV  ++ +++        VP      A E  L   +  R +++  L  + +++ 
Sbjct: 74  NMAQSLNVECFIKEFD--------VPL----YAKENKLSIEEAARKLRYKFLNEIAKKIN 121

Query: 138 ADVLATGH 145
           A+ +AT H
Sbjct: 122 ANKVATAH 129


>gi|217034699|ref|ZP_03440102.1| hypothetical protein HP9810_880g10 [Helicobacter pylori 98-10]
 gi|216942839|gb|EEC22334.1| hypothetical protein HP9810_880g10 [Helicobacter pylori 98-10]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAELL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|308062882|gb|ADO04769.1| argininosuccinate synthase [Helicobacter pylori Sat464]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYLENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|308061316|gb|ADO03204.1| argininosuccinate synthase [Helicobacter pylori Cuz20]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|114288|sp|P13257|ASSY_METBA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|149818|gb|AAA72677.1| argininosuccinate synthetase [Methanosarcina barkeri]
          Length = 396

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V +A SGG+D+SV   +LK   GYD V+ +++ +    +  KR           DA+  
Sbjct: 4   KVALAYSGGLDTSVCIPILKEKYGYDEVVTISVDVGQPEEEIKRA----------DAK-- 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I+  HY  D +E F    + P   +  + E  +      R +    ++   R+ GA 
Sbjct: 52  AEKISNKHYTIDAKEEFVKDYVFPLIKANGSYEGYVMGTSIARPLIAKKVVEAARKEGAV 111

Query: 140 VLATG 144
            LA G
Sbjct: 112 ALAHG 116


>gi|330508996|ref|YP_004385424.1| argininosuccinate synthase [Methanosaeta concilii GP-6]
 gi|328929804|gb|AEB69606.1| argininosuccinate synthase [Methanosaeta concilii GP-6]
          Length = 391

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 36/197 (18%)

Query: 23  VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A SGG+D+SV   LL+ R G+D I   L      ++   +G+  A Q          
Sbjct: 4   VVLAYSGGLDTSVCIPLLRERYGFDKIVTVLVDVGQPRSDIERGNLRAKQ---------- 53

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +   HY  D  E F    + P   +  + E  +      R +  S    +  +LG   L
Sbjct: 54  -LADEHYTIDAREEFVEKCLFPLIKANGSYEGYVLGTAIARPLIASKSAEIADKLGIKNL 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG--DMKKES 199
           A G   R     G+D  R   + R  D                 C +  P+   D+ +E 
Sbjct: 113 AHGCTGR-----GNDQLRFEAIFRATD-----------------CRVIAPMRELDLAREW 150

Query: 200 VRDLAREMGLDIADKSD 216
             D ARE G+D+    D
Sbjct: 151 EIDYAREHGIDVPVTKD 167


>gi|315231096|ref|YP_004071532.1| ATPase [Thermococcus barophilus MP]
 gi|315184124|gb|ADT84309.1| ATPase [Thermococcus barophilus MP]
          Length = 246

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
          RL   D D+ P + ++ VA S G DS+    +L+  G+DV+ V ++L   R+
Sbjct: 44 RLFGKDFDRAPINEKIAVAFSAGSDSTATVKILRWTGFDVVPVMVKLPQIRE 95


>gi|154509119|ref|ZP_02044761.1| hypothetical protein ACTODO_01638 [Actinomyces odontolyticus ATCC
           17982]
 gi|293189891|ref|ZP_06608597.1| argininosuccinate synthase [Actinomyces odontolyticus F0309]
 gi|153798753|gb|EDN81173.1| hypothetical protein ACTODO_01638 [Actinomyces odontolyticus ATCC
           17982]
 gi|292821194|gb|EFF80140.1| argininosuccinate synthase [Actinomyces odontolyticus F0309]
          Length = 406

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + ++ G +V+ V + +               G+D+   R R 
Sbjct: 6   RVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQ------------GGEDLEVIRQRA 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F     +P   + A  E   P V   +R V    L+   R+ GA
Sbjct: 54  LDCGAVEAYVADARDEFAEEYCMPALKANALYEGKYPLVSALSRPVITKHLVKAAREFGA 113

Query: 139 DVLATG 144
             +A G
Sbjct: 114 STVAHG 119


>gi|317179807|dbj|BAJ57593.1| argininosuccinate synthase [Helicobacter pylori F32]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|294787540|ref|ZP_06752793.1| argininosuccinate synthase [Parascardovia denticolens F0305]
 gi|315226874|ref|ZP_07868662.1| argininosuccinate synthase [Parascardovia denticolens DSM 10105]
 gi|294484896|gb|EFG32531.1| argininosuccinate synthase [Parascardovia denticolens F0305]
 gi|315121006|gb|EFT84138.1| argininosuccinate synthase [Parascardovia denticolens DSM 10105]
          Length = 407

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYN---SRKASKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV    L+ R G +V+ V+L L     S +  +++   C         
Sbjct: 3   RIVLAYSGGLDTSVAIPFLQDRTGKEVVAVSLDLGQGGESLETIRQRALACGA------- 55

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  +V D  + F +   +P   + A  +   P V   +R +    L+    + 
Sbjct: 56  -------VEAHVLDARDEFASDYCMPALKANAMYQGAYPLVSAISRPLIAKHLVDAAHRF 108

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 109 GADTIAHG 116


>gi|261855157|ref|YP_003262440.1| exsB protein [Halothiobacillus neapolitanus c2]
 gi|261835626|gb|ACX95393.1| exsB protein [Halothiobacillus neapolitanus c2]
          Length = 235

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
          + LD      + VV +SGG+DS+ VAA+ K DGY V  V+   Y  R   + K +
Sbjct: 1  MSLDTENTQPKAVVLLSGGLDSATVAAIAKSDGYQVHAVSFD-YGQRHKVELKAA 54


>gi|218507247|ref|ZP_03505125.1| argininosuccinate synthase [Rhizobium etli Brasil 5]
          Length = 219

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|119478303|ref|ZP_01618334.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2143]
 gi|119448643|gb|EAW29888.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2143]
          Length = 406

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+ D Y    VT                  G++V  AR+  +
Sbjct: 6   KVVLAYSGGLDTSVIVRWLQ-DTYQCEVVTF-----------TADIGQGEEVEPARKKAE 53

Query: 82  TINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + V   Y+ D +E F    + P   A++   GE  L      R +    L+ +T + GA
Sbjct: 54  ALGVKEIYIDDLKEEFVRDFVFPMFRANTIYEGEY-LLGTSIARPLIAKRLIEITNETGA 112

Query: 139 DVLATG 144
           D ++ G
Sbjct: 113 DAISHG 118


>gi|153007431|ref|YP_001368646.1| argininosuccinate synthase [Ochrobactrum anthropi ATCC 49188]
 gi|151559319|gb|ABS12817.1| Argininosuccinate synthase [Ochrobactrum anthropi ATCC 49188]
          Length = 412

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 15  KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 61

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   ++ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 62  EMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIARKTGA 121

Query: 139 DVLATG 144
           D +A G
Sbjct: 122 DAIAHG 127


>gi|317178320|dbj|BAJ56108.1| argininosuccinate synthase [Helicobacter pylori F30]
          Length = 350

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|172044120|sp|A6WV13|ASSY_OCHA4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 406

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   ++ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|57506130|ref|ZP_00372052.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57015614|gb|EAL52406.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 327

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+ + G  V  + + +    ++ K +          + RR  
Sbjct: 1   MKALALFSGGLDSLLAMKLITQQGIAVKALNINIGFGSRSDKSE----------EMRRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+    F   L++ +  GA  
Sbjct: 51  ALVGAEFEMIDVRNSYLKEVL--FNPQYGYGKHFNPCIDCH-AFMFKTALAMLKDEGASF 107

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 108 IITGEVLGQR 117


>gi|297379235|gb|ADI34122.1| argininosuccinate synthase [Helicobacter pylori v225d]
          Length = 350

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +       KR+    A   +     
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD            E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 62  VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSR 150
           D + +G  +  R
Sbjct: 109 DFVLSGEVLGQR 120


>gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 770

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 13/83 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVA---ALLKRD-GYDVIGVTLQL-YNSRKASKRKGSCCAGQ 71
           NPK  ++++++SGGVDS V+A   A L+R  GY++    + + Y +R  SK + S     
Sbjct: 411 NPKTRKIIISLSGGVDSMVIASALAHLRRSLGYNLQLTAVHIDYANRPDSKAEASYV--- 467

Query: 72  DVYDARRVCDTINVSHYVFDYEE 94
                 R C  + + ++V   EE
Sbjct: 468 -----ERYCQQLEIEYHVRRIEE 485


>gi|332184397|gb|AEE26651.1| NAD synthetase / Glutamine amidotransferase chain of NAD
          synthetase [Francisella cf. novicida 3523]
          Length = 249

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+V A+L  + G     + L   N++            QD+ DA  + + +
Sbjct: 33 VIGISGGIDSAVAASLAVKTGLPTTALILPSKNNQH-----------QDIQDALELVEKL 81

Query: 84 NVSHYVFDYEERFRN 98
          N+ H++   +  + N
Sbjct: 82 NIEHHIVTIQPAYEN 96


>gi|227823766|ref|YP_002827739.1| argininosuccinate synthase [Sinorhizobium fredii NGR234]
 gi|227342768|gb|ACP26986.1| argininosuccinate synthase [Sinorhizobium fredii NGR234]
          Length = 525

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)

Query: 13  DLDKNPKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAG 70
           D+  + KD++ VV+A SGG+D+S++   L+ + G +V+  T  L               G
Sbjct: 119 DIMASHKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADLGQ-------------G 165

Query: 71  QDVYDARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSD 128
           +++  AR+  + + +   Y+ D  E F    + P   + A  E   L      R +    
Sbjct: 166 EELEPARKKAEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKH 225

Query: 129 LLSVTRQLGADVLATG 144
           L+ + R+ GAD +A G
Sbjct: 226 LIDIARKTGADAIAHG 241


>gi|222087492|ref|YP_002546029.1| argininosuccinate synthase [Agrobacterium radiobacter K84]
 gi|221724940|gb|ACM28096.1| argininosuccinate synthase [Agrobacterium radiobacter K84]
          Length = 407

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + ++ GA
Sbjct: 56  ELLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIAKKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|315638034|ref|ZP_07893219.1| ThiI family protein [Campylobacter upsaliensis JV21]
 gi|315481882|gb|EFU72501.1| ThiI family protein [Campylobacter upsaliensis JV21]
          Length = 327

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+ + G  V  + + +    ++ K +          + RR  
Sbjct: 1   MKALALFSGGLDSLLAMKLITQQGIAVKALNINIGFGSRSDKSE----------EMRRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+    F   L++ +  GA  
Sbjct: 51  ALVGAEFEMIDVRNSYLKEVL--FNPQYGYGKHFNPCIDCH-AFMFKTALAMLKDEGASF 107

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 108 IITGEVLGQR 117


>gi|14521917|ref|NP_127394.1| hypothetical protein PAB1127 [Pyrococcus abyssi GE5]
 gi|5459137|emb|CAB50623.1| Hypothetical protein [Pyrococcus abyssi GE5]
          Length = 242

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           RL   + +++  ++++ VA SGG DSS    +L+  G+DV+ +T +L +  K   R+ +
Sbjct: 43  RLTGKEFERDKINVKIAVAYSGGSDSSATVKILRWAGFDVVPITARLPHISKEKLREET 101


>gi|227831113|ref|YP_002832893.1| exsB protein [Sulfolobus islandicus L.S.2.15]
 gi|227457561|gb|ACP36248.1| exsB protein [Sulfolobus islandicus L.S.2.15]
          Length = 464

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 90/218 (41%), Gaps = 29/218 (13%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111
            +R+            R + + + V       D  +   +A ++                
Sbjct: 282 REREA----------VRNIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170
           E     V     + FS  L++    G D +A+G +   +  Y  ++ +  R++ +     
Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
                  +AT   +  ++  P+G++ K  +  L  E+G
Sbjct: 390 -------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIG 420


>gi|212224843|ref|YP_002308079.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009800|gb|ACJ17182.1| ATPase [Thermococcus onnurineus NA1]
          Length = 323

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 16/133 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ V +SGG DS V+  LL    K+  ++++ VT+   +   A  R  S      V 
Sbjct: 46  KGERIAVGVSGGKDSVVLLHLLAKLQKKFPFELVAVTI---DEGIAGYRPPS------VE 96

Query: 75  DARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            ARR  + + + H+++ ++E   F     V    S+  GE    C  C    ++  L   
Sbjct: 97  IARRNAEKLGIEHHIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWRRWL-LNHA 155

Query: 133 TRQLGADVLATGH 145
            +++ AD LA GH
Sbjct: 156 AKEVEADKLAVGH 168


>gi|297621974|ref|YP_003710111.1| hypothetical protein wcw_1764 [Waddlia chondrophila WSU 86-1044]
 gi|297377275|gb|ADI39105.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A R+N +     PKD +V V    G  +S++A+LLKR GYD I     ++   +A  ++G
Sbjct: 405 AERINEI-----PKDRQVAVICGSGFRASIIASLLKRSGYDKIS---NVFGGMQAWIQEG 456

Query: 66  SCCAGQ 71
              +GQ
Sbjct: 457 YPVSGQ 462


>gi|322417767|ref|YP_004196990.1| Thiamine biosynthesis protein-like protein [Geobacter sp. M18]
 gi|320124154|gb|ADW11714.1| Thiamine biosynthesis protein-like protein [Geobacter sp. M18]
          Length = 334

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS++   +L   G  V    L   +       K + C  + V  A     
Sbjct: 4   KAIALLSGGLDSTLAVKVLLEQGIAV--EALNFTSPFCTCTGKNAGCKSEAVRVAEEFKI 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V H   DY E  RN         +  G+   PC+DC R           ++ GAD +
Sbjct: 62  PIKVMHKGADYLEIIRN-------PKHGHGKGMNPCIDC-RIYLLKQAREYMKESGADFV 113

Query: 142 ATGHYIRSR 150
            TG  +  R
Sbjct: 114 ITGEVLGQR 122


>gi|325282766|ref|YP_004255307.1| Argininosuccinate synthase [Deinococcus proteolyticus MRP]
 gi|324314575|gb|ADY25690.1| Argininosuccinate synthase [Deinococcus proteolyticus MRP]
          Length = 420

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 15/90 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           ++V+A SGG+D+S++   L+++ GYDV+  T  L               G +V +AR + 
Sbjct: 6   KIVLAYSGGLDTSIIIKWLQQERGYDVVAFTADL-------------GQGAEVDEAREKA 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYA 109
             T  VS Y  D  E F    + P   S A
Sbjct: 53  IRTGAVSAYALDLREEFVRDYVFPMMRSSA 82


>gi|116754741|ref|YP_843859.1| argininosuccinate synthase [Methanosaeta thermophila PT]
 gi|116666192|gb|ABK15219.1| argininosuccinate synthase [Methanosaeta thermophila PT]
          Length = 394

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 30/189 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +A SGG+D+SV   LL R+ Y +  V   L +  +           +D+    R  + 
Sbjct: 7   VALAYSGGLDTSVCIPLL-RERYGMKRVVTVLVDVGQPP---------EDIERGNRRAEK 56

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           ++  HY+ D ++ F    I P   +  + E  +      R +    ++ V R+LG + LA
Sbjct: 57  LSDEHYIIDAKDEFVRDYIFPLIKANGSYEGYVLGTAIARPLIARKVVDVARKLGINALA 116

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G   R     G+D  R   + R             AT  + +  +R    D+ +E   D
Sbjct: 117 HGCTGR-----GNDQLRFEAVFR-------------ATGMRVIAPMRDL--DLSREWEID 156

Query: 203 LAREMGLDI 211
            ARE G+D+
Sbjct: 157 YAREHGIDV 165


>gi|170017521|ref|YP_001728440.1| argininosuccinate synthase [Leuconostoc citreum KM20]
 gi|229889880|sp|B1MZP4|ASSY_LEUCK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|169804378|gb|ACA82996.1| Argininosuccinate synthase [Leuconostoc citreum KM20]
          Length = 410

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GYDVI V L +               G+D+   +    
Sbjct: 4   KLVLAYSGGLDTSVAIPWLKEKGYDVIAVVLNVGQH------------GKDMVAIQEKAL 51

Query: 82  TINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  S   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A 
Sbjct: 52  KVGASQSIVIDAQAEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENEAV 111

Query: 140 VLA---TGH 145
            +A   TGH
Sbjct: 112 AIAHGSTGH 120


>gi|326922453|ref|XP_003207463.1| PREDICTED: asparagine synthetase domain-containing protein 1-like
           [Meleagris gallopavo]
          Length = 636

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +P+   V V  SGGVDS V+AAL  R     +  D++ V        K ++   SC + +
Sbjct: 322 SPRKAHVAVLFSGGVDSMVIAALADRHVPLEEPIDLLNVAFMPKEQTKQTRTPKSCISQE 381

Query: 72  DVYDARRV 79
              D RRV
Sbjct: 382 MQLDLRRV 389


>gi|256823496|ref|YP_003147459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
 gi|256797035|gb|ACV27691.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
          Length = 362

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 27/147 (18%)

Query: 18  PKDMRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---- 72
           P+  R  VA+ SGG+DS + A +++  G  V G+              G C  G      
Sbjct: 14  PQKQRKAVALISGGLDSLLAAKVIQEQGIHVEGINF----------YTGFCVEGHTHAIR 63

Query: 73  --------VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RT 123
                     ++  V + + +  ++ D  E +++ V+ P    +  G    PC+DC    
Sbjct: 64  KKDKDKQKRNNSLWVAEQLGIKLHIIDISEEYKDIVLNP---KHGYGANLNPCLDCKIFM 120

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSR 150
           V  +   +   + G D + TG  I  R
Sbjct: 121 VNQAQAWAWAEENGFDFIITGEVIGQR 147


>gi|224437605|ref|ZP_03658558.1| GMP synthase [Helicobacter cinaedi CCUG 18818]
 gi|313144055|ref|ZP_07806248.1| GMP synthase [Helicobacter cinaedi CCUG 18818]
 gi|313129086|gb|EFR46703.1| GMP synthase [Helicobacter cinaedi CCUG 18818]
          Length = 583

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42
           EAT+ NSL   + P   +V+ A+SGGVDSSVVA LL R
Sbjct: 269 EATKSNSLKNTQKPTQ-KVLCAVSGGVDSSVVAILLYR 305


>gi|213864988|ref|ZP_03387107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 42

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           LGAD +ATGHY+R       +GK R  + R +D  +DQSYFL+ 
Sbjct: 2   LGADYIATGHYVRR---ADVNGKSR--LLRGLDGNKDQSYFLYT 40


>gi|257051513|ref|YP_003129346.1| GMP synthase subunit B [Halorhabdus utahensis DSM 12940]
 gi|256690276|gb|ACV10613.1| GMP synthase, large subunit [Halorhabdus utahensis DSM 12940]
          Length = 305

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 34/199 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++D    D + V+A+SGGVDSS  AAL     YD IG  L          RKG     ++
Sbjct: 14  EIDAQIGDSKAVIALSGGVDSSTAAAL----AYDAIGDQLTPVYVDTGLMRKGETEQIRE 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +D       ++ +    D  E     V  P    +A GE  +            +  +V
Sbjct: 70  TFDYMDSLRIVDATDRFLDELE----GVTDPEEKRHAIGEQFI-----------REFETV 114

Query: 133 TRQLGADVLATGHYIRSRLYV-GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            R++ AD L  G     R+   G       +   P  ++ D               +  P
Sbjct: 115 AREVDADYLVQGTIYPDRIESEGTIKSHHNVGGLPDVVDFD--------------GIVEP 160

Query: 192 LGDMKKESVRDLAREMGLD 210
           + D+ K+ VR++ARE+ L+
Sbjct: 161 MRDLYKDEVREVARELDLE 179


>gi|295101526|emb|CBK99071.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 172

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              +F+ LL+   +LG   +A+G Y R    +  D +    +  P     D+S  L A +
Sbjct: 89  EAARFAALLTAADKLGIQYIASGRYAR----IETDAQGMSHLFAPESGAPDESGTLAALS 144

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL 209
            + L  L  PLGD   E V ++A +  L
Sbjct: 145 PEVLSRLILPLGDFAPEDVAEMAEDFKL 172


>gi|239830925|ref|ZP_04679254.1| argininosuccinate synthase [Ochrobactrum intermedium LMG 3301]
 gi|239823192|gb|EEQ94760.1| argininosuccinate synthase [Ochrobactrum intermedium LMG 3301]
          Length = 406

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   ++ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 56  EMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|218516022|ref|ZP_03512862.1| argininosuccinate synthase [Rhizobium etli 8C-3]
          Length = 258

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 26  KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 72

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + R+ GA
Sbjct: 73  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 132

Query: 139 DVLATG 144
           D +A G
Sbjct: 133 DAIAHG 138


>gi|311069430|ref|YP_003974353.1| argininosuccinate synthase [Bacillus atrophaeus 1942]
 gi|310869947|gb|ADP33422.1| argininosuccinate synthase [Bacillus atrophaeus 1942]
          Length = 403

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 23/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76
           +VV+A SGG+D+SV    L+  GYDVI                 +CC     G+D+ +  
Sbjct: 6   KVVLAYSGGLDTSVAIKWLQEQGYDVI-----------------ACCLDVGEGKDLAFVQ 48

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           ++  +    + YV D +E F     +    ++   E   P V   +R +    L+ V  +
Sbjct: 49  QKALEVGATNSYVIDAKEEFAQEFALVSLQAHTLYEGKYPLVSALSRPLIAKKLVEVAEK 108

Query: 136 LGADVLATG 144
             A  +A G
Sbjct: 109 ENAVAVAHG 117


>gi|241206724|ref|YP_002977820.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860614|gb|ACS58281.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 407

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + ++ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIAKKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|157165515|ref|YP_001466416.1| ExsB protein [Campylobacter concisus 13826]
 gi|189038900|sp|A7ZCA8|QUEC_CAMC1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157101540|gb|EAT99024.2| ExsB protein [Campylobacter concisus 13826]
          Length = 221

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
          + V  MSGG+DS++ A + KR GYDV+ +    YN R   + K
Sbjct: 3  KAVCIMSGGMDSTLCAVMAKRAGYDVVALHFD-YNQRTMKREK 44


>gi|289806672|ref|ZP_06537301.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 80

 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
            +C VK R  Q  +P  +   +DD + V F++    V  GQ+ VFY+ +      LGGGI
Sbjct: 16  LRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGEV----CLGGGI 71

Query: 383 I 383
           I
Sbjct: 72  I 72


>gi|323209874|gb|EFZ94790.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 78

 Score = 38.1 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
            +C VK R  Q  +P  +   +DD + V F++    V  GQ+ VFY+ +      LGGGI
Sbjct: 14  LRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGEV----CLGGGI 69

Query: 383 I 383
           I
Sbjct: 70  I 70


>gi|294495633|ref|YP_003542126.1| argininosuccinate synthase [Methanohalophilus mahii DSM 5219]
 gi|292666632|gb|ADE36481.1| argininosuccinate synthase [Methanohalophilus mahii DSM 5219]
          Length = 394

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 19/151 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+A SGG+D+S+   LLK   D  +VI V + +   R            +DV +A + 
Sbjct: 4   KAVLAYSGGLDTSICVPLLKEKYDCDEVITVAVDVGQPR------------EDVEEATKK 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I+  H+  D  E F    I P   +    E  +      R +    ++ +  + GA 
Sbjct: 52  AQDISDLHFTLDVREEFVKDYIFPLIKANGDYEGYVMGTSIARPLIAKKVVEIAEKEGAS 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           +LA G   +     G+D  R   + R  D+E
Sbjct: 112 MLAHGCTGK-----GNDQLRFEAVFRLTDME 137


>gi|163783771|ref|ZP_02178756.1| hypothetical protein HG1285_09931 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880960|gb|EDP74479.1| hypothetical protein HG1285_09931 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 348

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG---QDVYDAR 77
           +R V  +SGG+DSS+   +L+  G +V  +           KR+         Q V  A 
Sbjct: 4   VRAVALLSGGLDSSLAVRILQEQGVEVKALHFYTGFCITEHKRRLGLTKKDGRQYVNPAL 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +    + V   + D  E + N V+ P    +  G+   PC+DC R         +  + G
Sbjct: 64  KAAAQLGVPLDIVDISEDYYNIVLNP---KFGYGKNVNPCIDC-RIFMLKKAKEIMEREG 119

Query: 138 ADVLATGHYIRSR 150
              + TG  +  R
Sbjct: 120 YHFVITGEVLYQR 132


>gi|161529233|ref|YP_001583059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosopumilus maritimus SCM1]
 gi|160340534|gb|ABX13621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosopumilus maritimus SCM1]
          Length = 337

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV  +SGG+DS +   +++  G+DV  V ++   +       G  C     ++ R   D
Sbjct: 9   KVVALLSGGLDSQLAVRMMQEQGFDVSAVAIK---TPFCDFDCGRGCG----FEIRERAD 61

Query: 82  TINV---SHYVFD-YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +NV   + Y+ D Y E  +N         +  G    PC+DC R + F        ++G
Sbjct: 62  DLNVNLKTVYLGDEYIEMLKN-------PKHGIGAGFNPCIDC-RAMMFDAAKKHMEEIG 113

Query: 138 ADVLATGHYIRSR 150
           A+ + +G  +  R
Sbjct: 114 AEFIVSGEVLGQR 126


>gi|292654369|ref|YP_003534266.1| hypothetical protein HVO_0190 [Haloferax volcanii DS2]
 gi|291372836|gb|ADE05063.1| conserved hypothetical protein TIGR00268 [Haloferax volcanii DS2]
          Length = 298

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          V++A SGGVDSSVVAAL     ++ +G      +   A   K       ++ DA+RV + 
Sbjct: 23 VLIAFSGGVDSSVVAAL----AHEALG------DDAVACTAKSETLPDAELDDAKRVAEE 72

Query: 83 INVSHYVFDYEE 94
          I + H   ++ E
Sbjct: 73 IGIEHLTVEFSE 84


>gi|254428409|ref|ZP_05042116.1| tRNA methyl transferase [Alcanivorax sp. DG881]
 gi|196194578|gb|EDX89537.1| tRNA methyl transferase [Alcanivorax sp. DG881]
          Length = 361

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 31/152 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---- 72
            P   R +  +SGG+DS +   +++  G +V GV              G C  G      
Sbjct: 6   QPIKRRAIALVSGGLDSMLAVKVMQEQGIEVEGVNFY----------TGFCVEGHTHAIR 55

Query: 73  --------VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--R 122
                     +A  V + + +  ++ D  E +++ V+ P    +  G    PC+DC    
Sbjct: 56  KKDKDKEKRNNALWVAEQLGIKMHIIDISEEYKDVVLNP---KHGYGANLNPCLDCKIFM 112

Query: 123 TVKFSDLLSVTRQL----GADVLATGHYIRSR 150
             + + +++  R+L    G D + TG  I  R
Sbjct: 113 VNQATLMINKARELAGDRGFDFIVTGEVIGQR 144


>gi|222528233|ref|YP_002572115.1| exsB protein [Caldicellulosiruptor bescii DSM 6725]
 gi|254764298|sp|B9MMB0|QUEC_ANATD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|222455080|gb|ACM59342.1| exsB protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 221

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 30/198 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR VV +SGG+DS+ +   +K  GY+V  ++  LY  + +          +++  A++ C
Sbjct: 1   MRAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKKTC 49

Query: 81  DTINVSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             +++ + + D   + E   +A+  P       Y    T    V  NR +    LLS++ 
Sbjct: 50  SLLSIPYKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNMV---LLSISA 106

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                + A       +L+ G       I   CR   +E  ++    A       +L  P 
Sbjct: 107 AYAISLGA------KKLFYGAHAGDHPIYPDCRKEFVEAMKNALYLADYIG--LELEAPY 158

Query: 193 GDMKKESVRDLAREMGLD 210
            DMKKE +     E+G++
Sbjct: 159 VDMKKEDILRRGLELGVN 176


>gi|212224510|ref|YP_002307746.1| hypothetical protein TON_1359 [Thermococcus onnurineus NA1]
 gi|212009467|gb|ACJ16849.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 263

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
           RL   D D++P   ++V+A S G DS+    +L+  G++V+ VT +L
Sbjct: 61  RLTGKDFDRSPVGEKIVLAFSAGSDSTSTLKILRWAGFEVVPVTAKL 107


>gi|329766102|ref|ZP_08257661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137373|gb|EGG41650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 350

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV  +SGG+DS +   +++  G++V  V ++   +       G  C     ++ R   D
Sbjct: 22  KVVALLSGGLDSQLAVRMMQEQGFEVSAVAIK---TPFCDFDCGRGCG----FEIREKAD 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +NV+       + +   +  P    +  G    PCVDC RT+ F+       ++GA+ +
Sbjct: 75  DLNVNLKTVYLGDEYIEMLKHP---KHGIGAGFNPCVDC-RTMMFNAAKKHMEEIGAEFI 130

Query: 142 ATGHYIRSR 150
            +G  +  R
Sbjct: 131 ISGEVLGQR 139


>gi|323698543|ref|ZP_08110455.1| PP-loop domain protein [Desulfovibrio sp. ND132]
 gi|323458475|gb|EGB14340.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132]
          Length = 305

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 20/126 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           R++VA+SGG DS  +   LK  GYDV G+ + L   NS + ++RK        V D    
Sbjct: 49  RILVALSGGKDSLALMLELKLQGYDVTGLHIDLGIPNSSEKARRK--------VED---F 97

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    +   VF   E     + +P    Y   + P+ C  C + +K      +  + G D
Sbjct: 98  CTLHGLPLRVF---EMAAWGLPIPDVKKYV--KRPV-CAVCGK-MKRHHFNRIAVEEGFD 150

Query: 140 VLATGH 145
           VLATGH
Sbjct: 151 VLATGH 156


>gi|78042619|ref|YP_359927.1| hypothetical protein CHY_1081 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994734|gb|ABB13633.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 338

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++ +   SGG+DS++   L+   G +V  V       R  +K       GQ      ++ 
Sbjct: 2   VKALALFSGGLDSTLAIKLILEQGVEVEAVNFTSPFCRCLAK-------GQGCASTAKLA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  +V +  E +   V  P    +  G    PC+DC R  KF     +  ++GA  
Sbjct: 55  ADLGIKLHVQNCGEEYLRIVENP---PHGYGSALNPCIDC-RIFKFKKAKKLMEEIGAKF 110

Query: 141 LATGHYIRSR 150
           + TG  +  R
Sbjct: 111 MITGEVLGQR 120


>gi|116254242|ref|YP_770080.1| argininosuccinate synthase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|119361254|sp|Q1MAN9|ASSY2_RHIL3 RecName: Full=Argininosuccinate synthase 2; AltName:
           Full=Citrulline--aspartate ligase 2
 gi|115258890|emb|CAK09999.1| putative argininosuccinate synthase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 407

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + ++ GA
Sbjct: 56  EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIAKKTGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|319957259|ref|YP_004168522.1| preq(0) biosynthesis protein quec [Nitratifractor salsuginis DSM
           16511]
 gi|319419663|gb|ADV46773.1| preQ(0) biosynthesis protein QueC [Nitratifractor salsuginis DSM
           16511]
          Length = 225

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 43/207 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V  +SGG+DS+V AAL KR+GY++I V    +N  + ++RK   C        R + +
Sbjct: 3   KAVCIISGGMDSAVSAALAKREGYEIIAVH---FNYGQRTERKELEC-------FRLLAE 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT----------------VK 125
                    D E   R  + +PF +   A     P +D                    + 
Sbjct: 53  ---------DLEAVERYEIDLPFFTQIGASALTDPSIDVPTEGLEPGVPVTYVPFRNGIF 103

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            S   ++  + GA+ +  G        V ++       CR   +   +      T ++  
Sbjct: 104 LSIAAAIAEKHGAEAIVIG--------VVEEDSSGYPDCRESYIRAMEKAINLGTKEETK 155

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIA 212
             ++ PL  ++K  +   A E+G+D++
Sbjct: 156 ITIKMPLVHLRKSEIVTKALEIGVDLS 182


>gi|268679904|ref|YP_003304335.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617935|gb|ACZ12300.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 261

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 22/123 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VA SGGVDSS     L +  YDV+G  +       A   +    A  ++ +ARR+ D
Sbjct: 17  RLIVAFSGGVDSS----FLLKTAYDVLGENVL------AISLQTPYIAESEIEEARRIAD 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I   H V          ++ P+            C  C   + FS L +  +Q    V+
Sbjct: 67  EIGARHLV----------LVKPWMEELRTNPKE-RCYLCKHAL-FSSLTTFAQQRDFRVI 114

Query: 142 ATG 144
           A G
Sbjct: 115 AEG 117


>gi|117926424|ref|YP_867041.1| hypothetical protein Mmc1_3145 [Magnetococcus sp. MC-1]
 gi|117610180|gb|ABK45635.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 346

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA----GQDVYDAR 77
           R +  +SGG+DS +   LL     +V  V    Y         G+  A        +DA 
Sbjct: 5   RALGLLSGGLDSMLATKLLMEQDIEVHCVN--FYTGFCVQSHTGAIRAKAGDPPPKHDAL 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                + +  ++ D  E +   V  P    Y  G+   PC+DC +        ++  QLG
Sbjct: 63  HAAQILGIKLHIVDISEEYVEIVTNP---KYGYGKNLNPCMDC-KIFMIKKAWALKEQLG 118

Query: 138 ADVLATGHYIRSR 150
            D L TG  +  R
Sbjct: 119 FDFLFTGEVVGQR 131


>gi|254173902|ref|ZP_04880573.1| N-type ATP pyrophosphatase [Thermococcus sp. AM4]
 gi|214032151|gb|EEB72982.1| N-type ATP pyrophosphatase [Thermococcus sp. AM4]
          Length = 245

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          RL   + ++ P  ++V VA S G DS+    +L+  G+DV+ +T +L
Sbjct: 43 RLEGREFERRPTGVKVAVAFSAGSDSTATLKILRWAGFDVVPITAKL 89


>gi|229820853|ref|YP_002882379.1| argininosuccinate synthase [Beutenbergia cavernae DSM 12333]
 gi|229566766|gb|ACQ80617.1| argininosuccinate synthase [Beutenbergia cavernae DSM 12333]
          Length = 413

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + +  G +VI V + +               G+D+   R R 
Sbjct: 8   RVVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQ------------GGEDLDVIRQRA 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  + F     +P  ++ A      P V   +R V    L+   RQ GA
Sbjct: 56  LDCGAVEAYVADARDEFATEYCMPALAANAMYLDRYPLVSALSRPVIVKHLVRAARQFGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DTVAHG 121


>gi|313902361|ref|ZP_07835765.1| argininosuccinate synthase [Thermaerobacter subterraneus DSM 13965]
 gi|313467409|gb|EFR62919.1| argininosuccinate synthase [Thermaerobacter subterraneus DSM 13965]
          Length = 419

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRV 79
           ++V+A SGG+D+SV    LK   GYDVI ++                  G+D+ +  ++ 
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKETYGYDVIALS-------------ADVGEGKDLDFIRQKA 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                V   V D  ERF    ++P   A++   G  PL     +R +    L+   RQ G
Sbjct: 51  LQVGAVEAVVVDARERFARDFVLPALQANALYQGRYPL-SAALSRPLIAQLLVETARQYG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 ATAVAHG 116


>gi|296109149|ref|YP_003616098.1| exsB protein [Methanocaldococcus infernus ME]
 gi|295433963|gb|ADG13134.1| exsB protein [Methanocaldococcus infernus ME]
          Length = 232

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 10/71 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V  +SGG+DS+V     K  GYD++ +T   YN        G   A +++  A+++ 
Sbjct: 1  MKAVSILSGGLDSTVATMYAKALGYDLLAIT---YNY-------GQRAAKREIEAAKKIS 50

Query: 81 DTINVSHYVFD 91
          + + + H V +
Sbjct: 51 EILKIEHKVVE 61


>gi|145344203|ref|XP_001416626.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576852|gb|ABO94919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 714

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKG 65
           + V++SGGVDS V+A +LK  GYDV  VTL + Y +R  S  + 
Sbjct: 256 IAVSLSGGVDSMVLAYILKHQGYDV--VTLHIDYKNRPESTEEA 297


>gi|319790339|ref|YP_004151972.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1]
 gi|317114841|gb|ADU97331.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1]
          Length = 402

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+A SGG+D+SV+   L   G++VI  T  +          G      ++ D  +   
Sbjct: 4   RVVLAYSGGLDTSVIVRWLADRGFEVITYTADV----------GQGEELDEIPDKAKASG 53

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
            +     V D +E F     +P   + A  E   P +   +R +    L+ V  ++GAD 
Sbjct: 54  AVEA--IVDDIKEEFARDYCMPLMRAGALYEGKYPLISALSRPLIAKKLVEVAHRVGADY 111

Query: 141 LATG 144
           +A G
Sbjct: 112 VAHG 115


>gi|240102208|ref|YP_002958516.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3]
 gi|239909761|gb|ACS32652.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3]
          Length = 276

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 23/136 (16%)

Query: 13  DLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +LD+  K++ + +VA SGG D SVVA  L ++ Y V  +   + +            A +
Sbjct: 44  ELDELMKNVDKAIVAYSGGKD-SVVALYLAKEVYKVPELEAVMIDH--------GLMAEE 94

Query: 72  DVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            + +ARR+ + + V   V  +DY + FRNA++         G++  PC  C+R      L
Sbjct: 95  AIENARRIAEHLGVPFRVLRYDYSDIFRNALL--------KGQS--PCRACSRRT-MEKL 143

Query: 130 LSVTRQLGADVLATGH 145
                + G   + TGH
Sbjct: 144 RKYAIRKGYRYIITGH 159


>gi|257052111|ref|YP_003129944.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halorhabdus utahensis DSM 12940]
 gi|256690874|gb|ACV11211.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halorhabdus utahensis DSM 12940]
          Length = 276

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 40/192 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSSVVAA+ +    D +G       +R  +  +       ++ +A+RV + 
Sbjct: 25  VLVAFSGGVDSSVVAAIAE----DALGADAVACTARSETLPEA------ELQEAKRVAEE 74

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E    A I               C  C R+++ S +    ++L  + + 
Sbjct: 75  IGIRHDIVEFSELESEAFIENDGDR---------CYHC-RSMRLSAMYDRAKELDIETVC 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G+  R   + ++ E D +  L                D+ KE VR+
Sbjct: 125 DG------TNAADPGEGHRPGLQAVE-ELDATSPLLEH-------------DITKEEVRE 164

Query: 203 LAREMGLDIADK 214
           +A    L +A+K
Sbjct: 165 IADHYDLSVAEK 176


>gi|298253916|ref|ZP_06977503.1| argininosuccinate synthase [Gardnerella vaginalis 5-1]
 gi|297532059|gb|EFH71034.1| argininosuccinate synthase [Gardnerella vaginalis 5-1]
          Length = 404

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV    LK + G DV+ V+L +    +A    K +   C         
Sbjct: 6   RIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGA------- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  E F +   +    + A  E   P V   +R +    L++   Q 
Sbjct: 59  -------VEAYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQF 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
            AD +A G   +     G+D  R  +  + +D E
Sbjct: 112 DADTIAHGCTGK-----GNDQVRFEVAIQSLDPE 140


>gi|297243608|ref|ZP_06927539.1| argininosuccinate synthase [Gardnerella vaginalis AMD]
 gi|296888359|gb|EFH27100.1| argininosuccinate synthase [Gardnerella vaginalis AMD]
          Length = 404

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV    LK + G DV+ V+L +    +A    K +   C         
Sbjct: 6   RIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGA------- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  E F +   +    + A  E   P V   +R +    L++   Q 
Sbjct: 59  -------VEAYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQF 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
            AD +A G   +     G+D  R  +  + +D E
Sbjct: 112 DADTIAHGCTGK-----GNDQVRFEVAIQSLDPE 140


>gi|300113174|ref|YP_003759749.1| tRNA methyl transferase-like protein [Nitrosococcus watsonii C-113]
 gi|299539111|gb|ADJ27428.1| tRNA methyl transferase-like protein [Nitrosococcus watsonii C-113]
          Length = 347

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 35/192 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-------Q 71
           +  + +  +SGG+DS +   +++  G  V G+              G C  G       +
Sbjct: 3   RQYKAIALVSGGLDSMLAVKVIQEQGIHVEGINF----------FTGFCVEGHTHAIRNK 52

Query: 72  DVYDARR-----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           D   A+R     V + + +  ++ +  E ++N V+ P    Y  G    PC+DC ++   
Sbjct: 53  DKNKAKRNNALWVAEQLGIKLHMIEVIEEYKNVVLNP---KYGYGANLNPCLDC-KSFMV 108

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L+  ++   D + TG        VG   K +R    P+      ++ L     + LC
Sbjct: 109 GKALAWMKENNFDFIITGE------VVGQRPKSQRAKTMPVVARESGAHDLLL---RPLC 159

Query: 187 DLRFPLGDMKKE 198
               PL   ++E
Sbjct: 160 AKNLPLTLPERE 171


>gi|266620688|ref|ZP_06113623.1| GMP synthase protein [Clostridium hathewayi DSM 13479]
 gi|288867681|gb|EFC99979.1| GMP synthase protein [Clostridium hathewayi DSM 13479]
          Length = 435

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   +  DV+  +  
Sbjct: 140 DKKVLLALSGGVDSSVVAALLIK----AIGKQLTCVHVNHGLMRKGESESVIDVFKHQLD 195

Query: 80  CDTINVSHYVFDYEERF 96
            + + V     D  ERF
Sbjct: 196 ANLVYV-----DATERF 207


>gi|326692751|ref|ZP_08229756.1| argininosuccinate synthase [Leuconostoc argentinum KCTC 3773]
          Length = 409

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V+A SGG+D+SV    LK  GYDVI V L +          G      D+  A+ +   
Sbjct: 5   LVLAYSGGLDTSVAIPWLKEKGYDVIAVVLNV----------GQHGKDMDMIQAKALKVG 54

Query: 83  INVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            + S  V D +  F    + P   A+    GE PL     +R +    L+ +  +  A  
Sbjct: 55  ASQS-IVIDAQAEFATDYVAPVIKANMLYEGEYPLVSA-LSRPLIIKKLVDIAHENNAVA 112

Query: 141 LA---TGH 145
           +A   TGH
Sbjct: 113 IAHGSTGH 120


>gi|325474270|gb|EGC77458.1| GMP synthase [Treponema denticola F0402]
          Length = 514

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42
           D+    KD +V++A+SGGVDSSV+AALL R
Sbjct: 212 DVQNTVKDGKVLLALSGGVDSSVLAALLNR 241


>gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
 gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
          Length = 1313

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKG 65
           + V++SGGVDS V+A +LK  GYDV  VTL + Y +R  S  + 
Sbjct: 863 IAVSLSGGVDSMVLAYILKHQGYDV--VTLHIDYKNRPESTEEA 904


>gi|294775258|ref|ZP_06740781.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|294450835|gb|EFG19312.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
          Length = 435

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   A  +V+     
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191

Query: 80  CDTINVSHYVFDYEERF 96
            + +N +    D  +RF
Sbjct: 192 -NQLNANLIYVDATDRF 207


>gi|118592068|ref|ZP_01549462.1| argininosuccinate synthase [Stappia aggregata IAM 12614]
 gi|118435364|gb|EAV42011.1| argininosuccinate synthase [Stappia aggregata IAM 12614]
          Length = 406

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 8   KVVLAYSGGLDTSIILKWLQTELGCEVVTFTADL-------------GQGEELEPARKKA 54

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ + ++ GA
Sbjct: 55  EMLGIKEIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAKETGA 114

Query: 139 DVLATG 144
           D +A G
Sbjct: 115 DAIAHG 120


>gi|319957802|ref|YP_004169065.1| thiamine biosynthesis protein:exsb [Nitratifractor salsuginis DSM
           16511]
 gi|319420206|gb|ADV47316.1| thiamine biosynthesis protein:ExsB [Nitratifractor salsuginis DSM
           16511]
          Length = 328

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR +   SGG+DS +   L+   G DV  + + +          G    G      +R  
Sbjct: 1   MRAISLFSGGLDSMLAVKLMTEQGIDVTALYVHI----------GFGSTGDVSEQLKRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +       + D  E +   ++  F   Y  G+   PC+DC+  + F    ++  + GA  
Sbjct: 51  ELAGADFRMVDVREDYIQNIL--FDPVYGYGKNFNPCIDCHGYM-FKIARALMPEEGASF 107

Query: 141 LATGHYIRSR 150
           L TG  +  R
Sbjct: 108 LVTGEVVGQR 117


>gi|283783148|ref|YP_003373902.1| argininosuccinate synthase [Gardnerella vaginalis 409-05]
 gi|283442007|gb|ADB14473.1| argininosuccinate synthase [Gardnerella vaginalis 409-05]
          Length = 404

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDAR 77
           R+V+A SGG+D+SV    LK + G DV+ V+L +    +A    K +   C         
Sbjct: 6   RIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGA------- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  E F +   +    + A  E   P V   +R +    L++   Q 
Sbjct: 59  -------VEAYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQF 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
            AD +A G   +     G+D  R  +  + +D E
Sbjct: 112 DADTIAHGCTGK-----GNDQVRFEVAIQSLDPE 140


>gi|42527224|ref|NP_972322.1| GMP synthase [Treponema denticola ATCC 35405]
 gi|50400363|sp|Q73LZ4|GUAA_TREDE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41817648|gb|AAS12233.1| GMP synthase [Treponema denticola ATCC 35405]
          Length = 523

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42
           D+    KD +V++A+SGGVDSSV+AALL R
Sbjct: 221 DVQNTVKDGKVLLALSGGVDSSVLAALLNR 250


>gi|329765762|ref|ZP_08257331.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137828|gb|EGG42095.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 265

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 22/124 (17%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGGVDS++VA A  ++ G   I VT       K           +++  A+++C
Sbjct: 16  KVMIALSGGVDSALVAYAAFQKLGNSAIAVTADYKTLSK-----------EELETAKQIC 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I +   + DY+E  +N   V  +S          C  C R      L+S+ +Q   +V
Sbjct: 65  SEIGIKQILVDYDE-LQNEEFVKNSSDR--------CFHC-RLELGDHLISLAKQHDVEV 114

Query: 141 LATG 144
           +  G
Sbjct: 115 IVDG 118


>gi|237709041|ref|ZP_04539522.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265755532|ref|ZP_06090153.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229457103|gb|EEO62824.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234138|gb|EEZ19731.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 435

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   A  +V+     
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191

Query: 80  CDTINVSHYVFDYEERF 96
            + +N +    D  +RF
Sbjct: 192 -NQLNANLIYVDATDRF 207


>gi|119361287|sp|Q11D10|ASSY_MESSB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 408

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  ARR  
Sbjct: 9   KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARRKA 55

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   ++ D  E F    + P   + A  E T L      R +    L+ +  + GA
Sbjct: 56  EMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSIARPLIAKRLVEIAAETGA 115

Query: 139 DVLATG 144
           D +A G
Sbjct: 116 DAIAHG 121


>gi|254167304|ref|ZP_04874156.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469]
 gi|197623567|gb|EDY36130.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469]
          Length = 288

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 25/192 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K   + ++ +A+SGG DS V+        YD+ G  + L     + K +         
Sbjct: 36  LKKYKPEGKIAIALSGGKDSMVLLHYFAERDYDIFGYFINLGIGEHSDKMEKL------- 88

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              R  C    V   V +  E +   +          G    PC  C  TVK   +  V 
Sbjct: 89  --VRNACKEYGVELIVTNLREEYGFGI---------EGVRRKPCSVCG-TVKRYLMNKVP 136

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR--FP 191
           R+ GA ++ATGH +   L    D   +  + +     R+   +L +T  + L  +R  + 
Sbjct: 137 RENGAKLVATGHNMDDFL----DFFFKNTLAKNYQWNRNMVPYLPSTHPKMLPKIRPLYL 192

Query: 192 LGDMKKESVRDL 203
           LGD + E    L
Sbjct: 193 LGDKEIEMYAKL 204


>gi|212692102|ref|ZP_03300230.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855]
 gi|237724624|ref|ZP_04555105.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212665494|gb|EEB26066.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855]
 gi|229436819|gb|EEO46896.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 435

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   A  +V+     
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191

Query: 80  CDTINVSHYVFDYEERF 96
            + +N +    D  +RF
Sbjct: 192 -NQLNANLIYVDATDRF 207


>gi|150006079|ref|YP_001300823.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254883447|ref|ZP_05256157.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641766|ref|ZP_07996447.1| GMP synthase 2 [Bacteroides sp. 3_1_40A]
 gi|149934503|gb|ABR41201.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254836240|gb|EET16549.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386600|gb|EFV67498.1| GMP synthase 2 [Bacteroides sp. 3_1_40A]
          Length = 435

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   A  +V+     
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191

Query: 80  CDTINVSHYVFDYEERF 96
            + +N +    D  +RF
Sbjct: 192 -NQLNANLIYVDATDRF 207


>gi|89101214|ref|ZP_01174042.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. NRRL B-14911]
 gi|89084067|gb|EAR63240.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. NRRL B-14911]
          Length = 401

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 23/131 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-Y 74
           + +VV+A SGG+D+SV    L   GY V+                 +CC     G+D+ +
Sbjct: 3   NQKVVLAYSGGLDTSVAIKWLGDQGYSVV-----------------ACCLDVGEGKDLKF 45

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
              +      V  YV D +E F N   +    ++A  E   P V   +R +    L+ V 
Sbjct: 46  IQEKALKVGAVQSYVLDVKEEFANEYALAALQAHALYEGKYPLVSALSRPLIAKKLVEVA 105

Query: 134 RQLGADVLATG 144
            + GA  +A G
Sbjct: 106 EKEGAAAVAHG 116


>gi|328957417|ref|YP_004374803.1| argininosuccinate synthase [Carnobacterium sp. 17-4]
 gi|328673741|gb|AEB29787.1| argininosuccinate synthase [Carnobacterium sp. 17-4]
          Length = 404

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 24/101 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76
           +VV+A SGG+D+SV    L  +GYDVI                 +CC     G+++ +  
Sbjct: 5   KVVLAYSGGLDTSVSIKWLMDEGYDVI-----------------ACCLDVGEGKNLDFIK 47

Query: 77  RRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPL 115
            +  +   V+ Y  D ++ F N  A+I   A +Y  G+ PL
Sbjct: 48  DKAIEIGAVASYTIDAKDEFANDFALIALQAHTYYEGKYPL 88


>gi|331092894|ref|ZP_04586583.2| FAD-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020974|gb|EGI01031.1| FAD-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 415

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY 55
          ++MR VV +  G   S+ AALLKR G+DV+ +  QL+
Sbjct: 6  REMRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLF 42


>gi|110835125|ref|YP_693984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
 gi|110648236|emb|CAL17712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
          Length = 361

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 31/152 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---- 72
            P   R +  +SGG+DS +   +++  G +V GV              G C  G      
Sbjct: 6   QPIKRRAIALVSGGLDSMLAVKVMQDQGIEVEGVNFY----------TGFCVEGHTHAIR 55

Query: 73  --------VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--R 122
                     +A  V + + +  ++ D  E +++ V+ P    +  G    PC+DC    
Sbjct: 56  KKDKDKEKRNNALWVAEQLGIKMHIIDISEEYKDVVLNP---KHGYGANLNPCLDCKIFM 112

Query: 123 TVKFSDLLSVTRQL----GADVLATGHYIRSR 150
             + + +++  R+L    G D + TG  I  R
Sbjct: 113 VNQATLMINKARELAGDRGFDFIVTGEVIGQR 144


>gi|126726430|ref|ZP_01742271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
 gi|126704293|gb|EBA03385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
          Length = 36

 Score = 37.4 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V+   +E G+++GQACVFY +DS   R+ GGG I
Sbjct: 2   VELITAEEGISAGQACVFYDADS--TRIFGGGWI 33


>gi|296120436|ref|YP_003628214.1| GMP synthase, large subunit [Planctomyces limnophilus DSM 3776]
 gi|296012776|gb|ADG66015.1| GMP synthase, large subunit [Planctomyces limnophilus DSM 3776]
          Length = 525

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           + RV+  +SGGVDSSVVAALL    Y  IG  L          RKG C
Sbjct: 227 NSRVICGLSGGVDSSVVAALL----YKAIGSQLSCIFVDNGLLRKGEC 270


>gi|222481023|ref|YP_002567260.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453925|gb|ACM58190.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239]
          Length = 412

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V +A SGG+D++V   LLK + GYD VIGV + +                ++  +A    
Sbjct: 4   VALAFSGGLDTTVCVPLLKEEYGYDEVIGVNVDVGQPT------------EEFDEAEETA 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  +V D +E F +       ++      PL      R V    +L V  + G D 
Sbjct: 52  DALGLDLHVVDAKEEFADLCYDAVKTNATYQGYPLGTA-LARPVIAEAILGVAEEQGCDA 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           +A G   +     G+D  R   + R  DLE
Sbjct: 111 IAHGCTGK-----GNDQLRFEAVWRGSDLE 135


>gi|298345148|ref|YP_003717835.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 43063]
 gi|304390735|ref|ZP_07372687.1| argininosuccinate synthase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235209|gb|ADI66341.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 43063]
 gi|304325618|gb|EFL92864.1| argininosuccinate synthase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 410

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +K + G D I V++ +          G      DV   +R  
Sbjct: 4   RVVLAYSGGLDTSVAIGWMKDKLGVDTIAVSVDV----------GQGGEDMDVIR-QRAL 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           D   V  Y+ D ++ F     +P   A+    G+ PL     +R +    L+   +Q GA
Sbjct: 53  DCGAVEAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSA-LSRPLIAKHLVMAAKQFGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TTMAHG 117


>gi|298492860|ref|YP_003723037.1| exsB protein ['Nostoc azollae' 0708]
 gi|298234778|gb|ADI65914.1| exsB protein ['Nostoc azollae' 0708]
          Length = 224

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 34/203 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS V    + DG +   ++   Y  +   + + +   G+ V       
Sbjct: 1   MKAVILLSGGLDSSTVLYQARADGCECYAISFD-YQQQHCRELQSAVLVGKSVG------ 53

Query: 81  DTINVSHYVFDYEERFR-------NAVIVPFASSY--AAGETPLPCVDCNRTVKFSDLLS 131
               V H V +++ R         +A+ +P A S    +   P+  V    T+  S  L 
Sbjct: 54  ---VVQHQVVNFDLRLWGGSALTDDAIALPQARSLDEMSQNIPVTYVPARNTIFLSFALG 110

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQ---QQLC 186
               + A+          R+Y+G +         CRP  ++  Q  F   T Q    Q  
Sbjct: 111 YAEVIAAE----------RVYIGVNALDYSGYPDCRPDYIQAMQEVFRLGTKQGREGQPI 160

Query: 187 DLRFPLGDMKKESVRDLAREMGL 209
           ++  PL ++KK  +  L  ++G+
Sbjct: 161 NIIAPLVNLKKTEIIQLGNQLGV 183


>gi|262383281|ref|ZP_06076417.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294179|gb|EEY82111.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 435

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG     +DV +  + 
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + +N +    D  +RF N +
Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211


>gi|307150182|ref|YP_003885566.1| exsB protein [Cyanothece sp. PCC 7822]
 gi|306980410|gb|ADN12291.1| exsB protein [Cyanothece sp. PCC 7822]
          Length = 227

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+  AA+   DGY+VI ++L  Y  R            +++  A++V   +
Sbjct: 7  VVLLSGGLDSATSAAIALADGYEVIALSLS-YGQRHQ----------RELQAAKKVVAAL 55

Query: 84 NV-SHYVFD 91
          ++ SHY+ D
Sbjct: 56 DIKSHYIMD 64


>gi|150008446|ref|YP_001303189.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|255014181|ref|ZP_05286307.1| putative GMP synthase [Bacteroides sp. 2_1_7]
 gi|301309336|ref|ZP_07215278.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3]
 gi|149936870|gb|ABR43567.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|300832425|gb|EFK63053.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3]
          Length = 435

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG     +DV +  + 
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + +N +    D  +RF N +
Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211


>gi|320096273|ref|ZP_08027852.1| argininosuccinate synthase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976794|gb|EFW08558.1| argininosuccinate synthase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 407

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    + ++ G +V+ V + +               G+D+   R R 
Sbjct: 7   RVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQ------------GGEDLEVIRQRA 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D  E F +   +P   +    E   P V   +R V    L+   R+ GA
Sbjct: 55  LDCGAVEAYVADAREEFASDYCMPALKANGLYEGRYPLVSALSRPVIVKHLVKAAREFGA 114

Query: 139 DVLATG 144
             +A G
Sbjct: 115 TTVAHG 120


>gi|298376303|ref|ZP_06986259.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19]
 gi|298267340|gb|EFI08997.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19]
          Length = 435

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG     +DV +  + 
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + +N +    D  +RF N +
Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211


>gi|256841570|ref|ZP_05547077.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|256737413|gb|EEU50740.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
          Length = 435

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG     +DV +  + 
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + +N +    D  +RF N +
Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211


>gi|157804083|ref|YP_001492632.1| trans-regulatory protein ExsB [Rickettsia canadensis str. McKiel]
 gi|167016449|sp|A8EZR4|QUEC_RICCK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|157785346|gb|ABV73847.1| Trans-regulatory protein ExsB [Rickettsia canadensis str. McKiel]
          Length = 227

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 16/194 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V  +SGG DS+ V A+ ++ GY++  ++        A  RK      +  Y+ ++   
Sbjct: 3   KLVNLVSGGADSATVLAIAQKMGYEIYAMSFNYGQRNNAELRKVRELVKE--YNVKQ-HK 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFAS--SYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +N+    F       N + VP     +    + P+  V    T+  S  L     +GA 
Sbjct: 60  IVNIDLRAFSGSALTDNNISVPHYHDVNELPDDVPVTYVPARNTIFLSYALGFAEVIGAK 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT---QQQLCDLRFPLGDMK 196
            +  G +        D        CRP  ++  +     AT    Q +   +  PL DM 
Sbjct: 120 DIFIGVHTSDSANYPD--------CRPEYIKSFEEMANLATNMGVQGKKITIHTPLIDMT 171

Query: 197 KESVRDLAREMGLD 210
           KE +     E+G+D
Sbjct: 172 KEQIIRTGLELGVD 185


>gi|308234263|ref|ZP_07665000.1| GMP synthase, large subunit [Atopobium vaginae DSM 15829]
 gi|328943814|ref|ZP_08241279.1| GMP synthase [Atopobium vaginae DSM 15829]
 gi|327491783|gb|EGF23557.1| GMP synthase [Atopobium vaginae DSM 15829]
          Length = 538

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAAL+ R     IG  L          RKG     ++V+  +  
Sbjct: 228 DKKVILALSGGVDSSVVAALVHR----AIGKQLTCVFVNHGLLRKGEPELVEEVFRKQFD 283

Query: 80  CDTINVSHYVFDYEERF 96
            D ++V       EER+
Sbjct: 284 VDLVHV-----HAEERY 295


>gi|319790392|ref|YP_004152025.1| protein of unknown function DUF814 [Thermovibrio ammonificans HB-1]
 gi|317114894|gb|ADU97384.1| protein of unknown function DUF814 [Thermovibrio ammonificans HB-1]
          Length = 329

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%)

Query: 28  SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSH 87
           SGG+DS + A LL+  G+ V+GV   +Y          S   G+D  + +++ D + +  
Sbjct: 11  SGGLDSVIAAKLLQDMGFKVVGV--HIY----------SPLFGKDRKELQKLADILGIEL 58

Query: 88  YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
            + +  + +   +  P    Y  G+   PC+DC +      L  V  + GA VLATG  +
Sbjct: 59  KLVEAGDDYLQILSSP---RYGYGKNLNPCIDC-KAYMLRKLKEVAPE-GA-VLATGEVL 112

Query: 148 RSR 150
             R
Sbjct: 113 GQR 115


>gi|309776979|ref|ZP_07671949.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915390|gb|EFP61160.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 430

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   +  +V+  +  
Sbjct: 135 DRKVLLALSGGVDSSVVAALLLK----AIGKQLYCVHVNHGLMRKGESESVIEVFQNQMD 190

Query: 80  CDTINVSHYVFDYEERF 96
            + I V     D  ERF
Sbjct: 191 ANLIYV-----DASERF 202


>gi|116753752|ref|YP_842870.1| exsB protein [Methanosaeta thermophila PT]
 gi|121693804|sp|A0B6A6|QUEC_METTP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|116665203|gb|ABK14230.1| preQ(0) biosynthesis protein QueC [Methanosaeta thermophila PT]
          Length = 224

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 32/213 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R V   SGG+DS+V A + +R G DV    + +   ++A +R        ++    R+ D
Sbjct: 3   RAVCLCSGGLDSTVAATIARRSGMDV--YLIHVSYGQQAERR--------EIEAIERIAD 52

Query: 82  TINVSHYVFDYEERFRN-AVIVPFASSYAAGE--------TPLPCVDCNRTVKFSDLLSV 132
            I  S  +    + FRN + +    +    GE        TP   V C  TV  S   + 
Sbjct: 53  AIGASDLMCSRIDLFRNISALTTQGARIPRGEEVSLDSESTPPTWVYCRNTVLLSMAAAY 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ-QQLCDLRFP 191
              LGA  +  G      +   D+        RP  +E+  +    A     +   +  P
Sbjct: 113 AEYLGAHSIYVGFNAEEAMSYPDN--------RPEFVEQFNALLEKAVASFSRPPKVVAP 164

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQ 224
           L DM+K   +D+ R +G DI    +    C++ 
Sbjct: 165 LVDMRK---KDIVR-LGADIKAPLELTWSCYLN 193


>gi|124027202|ref|YP_001012522.1| argininosuccinate synthase [Hyperthermus butylicus DSM 5456]
 gi|166219971|sp|A2BJL6|ASSY_HYPBU RecName: Full=Argininosuccinate synthase; AltName:
          Full=Citrulline--aspartate ligase
 gi|123977896|gb|ABM80177.1| Argininosuccinate synthase [Hyperthermus butylicus DSM 5456]
          Length = 396

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 26/34 (76%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          M+VV+A SGG+D+S +  LL+  G++V+ VT+ +
Sbjct: 1  MKVVLAYSGGLDTSAILVLLREQGHEVVTVTVSV 34


>gi|315231454|ref|YP_004071890.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP]
 gi|315184482|gb|ADT84667.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP]
          Length = 274

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%)

Query: 13  DLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L++  KD+ + +VA SGG DS+ VA  L ++ Y V  +   + +            AG+
Sbjct: 44  ELEELMKDVDKAIVAFSGGKDST-VALYLAKEVYKVPELEAVMIDH--------GFMAGE 94

Query: 72  DVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            + +A+R+ + +NV   +  +DY + FR A +          +   PC  C++      L
Sbjct: 95  AIENAKRIAEYLNVQFTILRYDYSDIFREAFL----------KAQSPCRRCSKRT-MEKL 143

Query: 130 LSVTRQLGADVLATGH 145
                + G   + TGH
Sbjct: 144 RRYALKKGVKYIITGH 159


>gi|330964714|gb|EGH64974.1| hypothetical protein PSYAC_08692 [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 415

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +++R VV +  G   S+ AALLKR G+DV+ +  QL+   + S  +   C   D  +   
Sbjct: 6  REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63

Query: 79 VCDTINVSHY 88
          + D +N + +
Sbjct: 64 MLDAVNAAGF 73


>gi|330878016|gb|EGH12165.1| hypothetical protein PSYMP_20004 [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 415

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +++R VV +  G   S+ AALLKR G+DV+ +  QL+   + S  +   C   D  +   
Sbjct: 6  REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63

Query: 79 VCDTINVSHY 88
          + D +N + +
Sbjct: 64 MLDAVNAAGF 73


>gi|199597668|ref|ZP_03211096.1| Argininosuccinate synthase [Lactobacillus rhamnosus HN001]
 gi|258509812|ref|YP_003172563.1| argininosuccinate synthase [Lactobacillus rhamnosus GG]
 gi|199591475|gb|EDY99553.1| Argininosuccinate synthase [Lactobacillus rhamnosus HN001]
 gi|257149739|emb|CAR88712.1| Argininosuccinate synthase [Lactobacillus rhamnosus GG]
 gi|259651075|dbj|BAI43237.1| argininosuccinate synthase [Lactobacillus rhamnosus GG]
          Length = 406

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI V L +          G   A  D    ++   
Sbjct: 4   KIVLAYSGGLDTSVAIPWLMDKGYEVIAVVLNV----------GQPDADFDAIQ-QKALK 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +   V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 53  VGAIDSIVIDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|14591685|ref|NP_143773.1| hypothetical protein PH1943 [Pyrococcus horikoshii OT3]
 gi|3258387|dbj|BAA31070.1| 243aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 243

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          RL   +  +   D ++ VA SGG DSS    +L+  G+DVI +T +L
Sbjct: 44 RLEGKEFPRGKIDFKMAVAYSGGSDSSATVKILRWAGFDVIPITAKL 90


>gi|15896988|ref|NP_341593.1| transcription regulator (exsB) related protein [Sulfolobus
           solfataricus P2]
 gi|284173860|ref|ZP_06387829.1| transcription regulator (exsB) related protein [Sulfolobus
           solfataricus 98/2]
 gi|74543016|sp|Q981C9|QUEC_SULSO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|13813145|gb|AAK40383.1| Transcription regulator (exsB) related protein [Sulfolobus
           solfataricus P2]
 gi|261601641|gb|ACX91244.1| exsB protein [Sulfolobus solfataricus 98/2]
          Length = 464

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++V+    + +L + +  K  RV+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVTSNKLITTLPIMEKRKKYRVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKG 65
            +R+ 
Sbjct: 282 KEREA 286


>gi|254173021|ref|ZP_04879695.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
 gi|214033177|gb|EEB74005.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
          Length = 306

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSC 67
           D RV+V +SGG DS+V A +LK+ GY++  + + L    Y+ +  S  K  C
Sbjct: 49  DERVLVVVSGGKDSAVTAYILKKLGYNIECLHINLGIGEYSEKSESYAKKQC 100


>gi|212703980|ref|ZP_03312108.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098]
 gi|212672593|gb|EEB33076.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098]
          Length = 354

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
           +D R++VA+SGG DS  +   L R GYDV G+ + L
Sbjct: 98  RDERILVALSGGKDSLALMLELSRQGYDVTGLHIDL 133


>gi|293402102|ref|ZP_06646241.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304494|gb|EFE45744.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 437

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   +  +V+    
Sbjct: 141 KDKKVLLALSGGVDSSVVAALLIK----AIGKQLVCVHVNHGLMRKGESESVVEVFK--- 193

Query: 79  VCDTINVSHYVFDYEERF 96
             + ++ +    D  ERF
Sbjct: 194 --NQLDANLIYADASERF 209


>gi|225174283|ref|ZP_03728282.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225170068|gb|EEG78863.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 435

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RK    A  +V+  +  
Sbjct: 140 DKKVLLALSGGVDSSVVAALLIK----AIGKQLVCVHVNHGLMRKNESEAVVEVFKNQLD 195

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + I V     D  ERF N +
Sbjct: 196 ANLIYV-----DASERFLNKL 211


>gi|292490681|ref|YP_003526120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
 gi|291579276|gb|ADE13733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
          Length = 347

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-----------TLQLYNS-RKASKRKGS 66
           K  + V  +SGG+DS + A +++  G  V G+           T  + N  +K +KR  +
Sbjct: 3   KQRKAVALISGGLDSMLAAKVMQEQGIHVEGINFFTGFCVEGHTHAIRNKDKKRAKRNNA 62

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             A +           + +  ++ +  + +++ V+ P    Y  G    PC+DC +    
Sbjct: 63  LWAAEQ----------LGIKLHMVEVIDEYKDVVLNP---KYGYGAHLNPCLDC-KCFMV 108

Query: 127 SDLLSVTRQLGADVLATGHYIRSR 150
           +  L+  ++ G D + TG  +  R
Sbjct: 109 TKALAWMKENGFDFIVTGEVVGQR 132


>gi|323703499|ref|ZP_08115145.1| argininosuccinate synthase [Desulfotomaculum nigrificans DSM 574]
 gi|323531490|gb|EGB21383.1| argininosuccinate synthase [Desulfotomaculum nigrificans DSM 574]
          Length = 401

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL 54
          +VV+A SGG+D+S++ A LK + GYDVI +T  L
Sbjct: 3  KVVLAYSGGLDTSIIIAWLKENYGYDVIALTADL 36


>gi|134298155|ref|YP_001111651.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1]
 gi|172044248|sp|A4J173|ASSY_DESRM RecName: Full=Argininosuccinate synthase; AltName:
          Full=Citrulline--aspartate ligase
 gi|134050855|gb|ABO48826.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL 54
          +VV+A SGG+D+SV+ A LK + GY+VI VT  L
Sbjct: 3  KVVLAYSGGLDTSVIIAWLKENYGYEVIAVTADL 36


>gi|331016004|gb|EGH96060.1| hypothetical protein PLA106_08375 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 415

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +++R VV +  G   S+ AALLKR G+DV+ +  QL+   + S  +   C   D  +   
Sbjct: 6  REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63

Query: 79 VCDTINVSHY 88
          + D +N + +
Sbjct: 64 MLDAVNAAGF 73


>gi|213969468|ref|ZP_03397605.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          T1]
 gi|301382680|ref|ZP_07231098.1| hypothetical protein PsyrptM_08612 [Pseudomonas syringae pv.
          tomato Max13]
 gi|302061617|ref|ZP_07253158.1| hypothetical protein PsyrptK_16650 [Pseudomonas syringae pv.
          tomato K40]
 gi|302130973|ref|ZP_07256963.1| hypothetical protein PsyrptN_06231 [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|213925839|gb|EEB59397.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 415

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +++R VV +  G   S+ AALLKR G+DV+ +  QL+   + S  +   C   D  +   
Sbjct: 6  REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63

Query: 79 VCDTINVSHY 88
          + D +N + +
Sbjct: 64 MLDAVNAAGF 73


>gi|28872217|ref|NP_794836.1| hypothetical protein PSPTO_5104 [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28855471|gb|AAO58531.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 415

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +++R VV +  G   S+ AALLKR G+DV+ +  QL+   + S  +   C   D  +   
Sbjct: 6  REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63

Query: 79 VCDTINVSHY 88
          + D +N + +
Sbjct: 64 MLDAVNAAGF 73


>gi|254373218|ref|ZP_04988707.1| NAD synthase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570945|gb|EDN36599.1| NAD synthase [Francisella novicida GA99-3549]
          Length = 249

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+V A+L  + G  +  + L   N++            QD+ DA  + + +
Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPITALILPSDNNQH-----------QDMQDALDLIEML 81

Query: 84 NVSHYVFDYEERFR 97
          N+ HY    +  + 
Sbjct: 82 NIEHYTISIQPAYE 95


>gi|119511109|ref|ZP_01630227.1| hypothetical protein N9414_16856 [Nodularia spumigena CCY9414]
 gi|119464204|gb|EAW45123.1| hypothetical protein N9414_16856 [Nodularia spumigena CCY9414]
          Length = 234

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 36/205 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +M+ V+ +SGG+DSS V    K DGY+   ++   ++ ++  +R        +++ A  V
Sbjct: 9   EMKAVILLSGGLDSSTVLYQAKADGYECHPIS---FDYQQRHRR--------ELHSAFLV 57

Query: 80  CDTIN-VSHYVFDYEERFR-------NAVIVPFASSY--AAGETPLPCVDCNRTVKFSDL 129
             T+  V H V +++ R           + +P   S    +   P+  V    T+  S  
Sbjct: 58  AQTLGVVKHQVVNFDLRLWGGSALTDETINLPQERSLDEMSQNIPVTYVPARNTIFLSFA 117

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQ--- 184
           L     + A           R+Y+G +         CRP  ++  Q  F   T Q +   
Sbjct: 118 LGYAEAIAAQ----------RVYIGVNALDYSGYPDCRPDYIQAMQKVFQLGTKQGREGN 167

Query: 185 LCDLRFPLGDMKKESVRDLAREMGL 209
              +  PL D+KK  +  L  ++G+
Sbjct: 168 PIKIVAPLIDLKKTEIIQLGNQLGV 192


>gi|11499151|ref|NP_070385.1| hypothetical protein AF1556 [Archaeoglobus fulgidus DSM 4304]
 gi|2649005|gb|AAB89691.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 274

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          +V++A SGGVDSS +AA+    G +V+ VT+             S    +++ +A+R+ +
Sbjct: 28 KVLIAFSGGVDSSTLAAVCSNAGVEVLAVTVL-----------SSVSPRREMEEAKRIAE 76

Query: 82 TINVSH 87
           + V H
Sbjct: 77 ELGVRH 82


>gi|315656488|ref|ZP_07909377.1| argininosuccinate synthase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493047|gb|EFU82649.1| argininosuccinate synthase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 390

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    +K + G D I V++ +               G+D+   R R 
Sbjct: 4   RVVLAYSGGLDTSVAIGWMKDKLGVDTIAVSVDVGQ------------GGEDMDVIRQRA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            D   V  Y+ D ++ F     +P   A+    G+ PL     +R +    L+   +Q G
Sbjct: 52  LDCGAVEAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSA-LSRPLIAKHLVMAAKQFG 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 ATTMAHG 117


>gi|76801631|ref|YP_326639.1| GMP synthase subunit B [Natronomonas pharaonis DSM 2160]
 gi|121695540|sp|Q3IS14|GUAAB_NATPD RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|76557496|emb|CAI49076.1| GMP synthase (glutamine-hydrolyzing), subunit B [Natronomonas
           pharaonis DSM 2160]
          Length = 305

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 44/197 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D   V+A+SGGVDSS  AAL     Y+ IG  L          RKG     +D +D    
Sbjct: 21  DANAVIALSGGVDSSTAAAL----AYEAIGDQLTPVYVDTGLMRKGETDQIRDTFD---Y 73

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            D++     + D  +RF +A   +  P    +A GE  +            +  +V R +
Sbjct: 74  MDSLR----IIDARDRFLDALSGITDPEEKRHAIGEQFI-----------REFETVARDV 118

Query: 137 GADVLATGHYIRSRLYV-GDDGKRRRIMCRP--MDLERDQSYFLFATTQQQLCDLRFPLG 193
            AD L  G     R+   G       +   P  +D E                 +  P+ 
Sbjct: 119 DADYLVQGTIYPDRIESEGTIKSHHNVGGLPEVVDFE----------------GIVEPMR 162

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR++ARE+ L+
Sbjct: 163 DLYKDEVREVARELDLE 179


>gi|121997522|ref|YP_001002309.1| argininosuccinate synthase [Halorhodospira halophila SL1]
 gi|166219970|sp|A1WUZ5|ASSY_HALHL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|121588927|gb|ABM61507.1| argininosuccinate synthase [Halorhodospira halophila SL1]
          Length = 403

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+   G +V+  T  L               G+++  ARR  
Sbjct: 6   KVVLAYSGGLDTSVILKWLEETYGCEVVTFTADL-------------GQGEELEPARRKA 52

Query: 81  DTINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +   +   YV D  E F    + P   A++   GE  L      R +     + + R+ G
Sbjct: 53  EAFGIREIYVDDLREEFARDFVFPMFRANAVYEGEY-LLGTSIARPLIAKRQVEIARETG 111

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 112 ADAVAHG 118


>gi|312128589|ref|YP_003993463.1| nad+ synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778608|gb|ADQ08094.1| NAD+ synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 540

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 27/140 (19%)

Query: 22  RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + VV +SGG+DSSVV  L    L R+  +V+GV++    SR +S+          + DA+
Sbjct: 287 KAVVGLSGGIDSSVVCCLAVEALGRE--NVLGVSMP---SRYSSE--------HSIKDAK 333

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV---DCNRTVKFSDLLSVTR 134
            + + + +   ++  E+ FR      +   +   ETPL  +   +    ++ + L+ ++ 
Sbjct: 334 SLAENLGIEFRIYPIEDVFR-----AYLRMFNTSETPLQDLAEENIQARIRGNILMFISN 388

Query: 135 QLGADVLATGHYIRSRLYVG 154
           +    VL TG+  +S L VG
Sbjct: 389 RENRLVLTTGN--KSELAVG 406


>gi|227875730|ref|ZP_03993858.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35243]
 gi|269976721|ref|ZP_06183697.1| argininosuccinate synthase [Mobiluncus mulieris 28-1]
 gi|227843672|gb|EEJ53853.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35243]
 gi|269935086|gb|EEZ91644.1| argininosuccinate synthase [Mobiluncus mulieris 28-1]
          Length = 411

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           R+V+A SGG+D+SV    +K     +VI V++                 G+D+   R R 
Sbjct: 5   RIVLAYSGGLDTSVAIGWMKEKLDVEVIAVSVDCGQ------------GGEDLQVIRQRA 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D ++ F N   +P   +    E   P V   +R +    L+   +Q GA
Sbjct: 53  LDCGAVEAYVADAKDEFANDYCMPALRTNGLYEGKYPLVSALSRPLISKHLVMAAKQFGA 112

Query: 139 DVLATG 144
             +A G
Sbjct: 113 TTMAHG 118


>gi|160939548|ref|ZP_02086897.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437499|gb|EDP15262.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 433

 Score = 37.0 bits (84), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   +  DV+
Sbjct: 138 DRKVLLALSGGVDSSVVAALLIK----AIGKQLTCVHVNHGLMRKGESESVIDVF 188


>gi|306819006|ref|ZP_07452723.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35239]
 gi|307700340|ref|ZP_07637380.1| argininosuccinate synthase [Mobiluncus mulieris FB024-16]
 gi|304648199|gb|EFM45507.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35239]
 gi|307614551|gb|EFN93780.1| argininosuccinate synthase [Mobiluncus mulieris FB024-16]
          Length = 411

 Score = 37.0 bits (84), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           R+V+A SGG+D+SV    +K     +VI V++                 G+D+   R R 
Sbjct: 5   RIVLAYSGGLDTSVAIGWMKEKLDVEVIAVSVDCGQ------------GGEDLQVIRQRA 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V  YV D ++ F N   +P   +    E   P V   +R +    L+   +Q GA
Sbjct: 53  LDCGAVEAYVADAKDEFANDYCMPALRTNGLYEGKYPLVSALSRPLISKHLVMAAKQFGA 112

Query: 139 DVLATG 144
             +A G
Sbjct: 113 TTMAHG 118


>gi|56708321|ref|YP_170217.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89256074|ref|YP_513436.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          holarctica LVS]
 gi|110670792|ref|YP_667349.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115314550|ref|YP_763273.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
          subsp. holarctica OSU18]
 gi|167009801|ref|ZP_02274732.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
          subsp. holarctica FSC200]
 gi|187931797|ref|YP_001891782.1| NAD+ synthetase [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|224457441|ref|ZP_03665914.1| NAD+ synthetase [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254367407|ref|ZP_04983433.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          holarctica 257]
 gi|254369082|ref|ZP_04985094.1| hypothetical protein FTAG_00010 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|254370804|ref|ZP_04986809.1| NAD synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875141|ref|ZP_05247851.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|224510802|pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|224510803|pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|224510804|pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|224510805|pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|56604813|emb|CAG45892.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89143905|emb|CAJ79124.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          holarctica LVS]
 gi|110321125|emb|CAL09275.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115129449|gb|ABI82636.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
          subsp. holarctica OSU18]
 gi|134253223|gb|EBA52317.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          holarctica 257]
 gi|151569047|gb|EDN34701.1| NAD synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|157122032|gb|EDO66172.1| hypothetical protein FTAG_00010 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|187712706|gb|ACD31003.1| NAD+ synthetase [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|254841140|gb|EET19576.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|282159552|gb|ADA78943.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 249

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+V A+L  + G     + L   N++            QD+ DA  + + +
Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81

Query: 84 NVSHYVFDYEERFR 97
          N+ HY    +  + 
Sbjct: 82 NIEHYTISIQPAYE 95


>gi|156502091|ref|YP_001428156.1| NAD+ synthetase [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|290954539|ref|ZP_06559160.1| NAD+ synthetase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312055|ref|ZP_06802870.1| NAD+ synthetase [Francisella tularensis subsp. holarctica URFT1]
 gi|156252694|gb|ABU61200.1| NAD+ synthetase [Francisella tularensis subsp. holarctica
          FTNF002-00]
          Length = 249

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+V A+L  + G     + L   N++            QD+ DA  + + +
Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81

Query: 84 NVSHYVFDYEERFR 97
          N+ HY    +  + 
Sbjct: 82 NIEHYTISIQPAYE 95


>gi|16332015|ref|NP_442743.1| ExsB protein [Synechocystis sp. PCC 6803]
 gi|1001327|dbj|BAA10814.1| ExsB protein [Synechocystis sp. PCC 6803]
          Length = 271

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           VV +SGG+DS+ VAA+ KR+GY VI ++   Y  R
Sbjct: 44 AVVLLSGGLDSATVAAIAKREGYRVIALSFN-YGQR 78


>gi|289207540|ref|YP_003459606.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix]
 gi|288943171|gb|ADC70870.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix]
          Length = 407

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV+   L+ + G +VI  T  L               G++V  AR   
Sbjct: 7   RVVLAYSGGLDTSVILKWLEDQYGCEVITFTADL-------------GQGEEVEPARAKA 53

Query: 81  DTINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           + + V   Y+ D  E F    + P   A++   GE  L      R +    ++ +  + G
Sbjct: 54  EALGVKQIYIEDLRETFVRDYVFPMFRANTIYEGEY-LLGTSIARPLIARRMVEIAEETG 112

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 113 ADAIAHG 119


>gi|218782480|ref|YP_002433798.1| hypothetical protein Dalk_4652 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763864|gb|ACL06330.1| protein of unknown function DUF814 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 331

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 20/133 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +  +   SGG+DS + A +LK  G +V  ++ +       + RK S   G  +     
Sbjct: 6   KKLSALGLSSGGLDSILSALVLKEQGIEVSWISFETPFFSADNARKASADTGIPL----- 60

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                 ++ Y+  DY E   N       + Y  G+   PC+DC+  + F     V +++G
Sbjct: 61  ------ITRYILDDYLEMLLNP-----PAGY--GKNMNPCMDCH-ALMFRLAHQVMQEIG 106

Query: 138 ADVLATGHYIRSR 150
           AD L +G  +  R
Sbjct: 107 ADFLFSGEVLGQR 119


>gi|86741855|ref|YP_482255.1| argininosuccinate synthase [Frankia sp. CcI3]
 gi|119361276|sp|Q2J866|ASSY_FRASC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|86568717|gb|ABD12526.1| argininosuccinate synthase [Frankia sp. CcI3]
          Length = 400

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +  + G DV+ + + +               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGAETGADVVALAVDVGQ------------GGEDLEAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            T   V   V D  E F  + + P   S A      P +   +R V    L++  R+ GA
Sbjct: 52  LTCGAVESIVVDAREEFAESFVAPAIKSNALYMDRYPLISSLSRPVIVRHLVAAAREHGA 111

Query: 139 DVLATG 144
           D +A G
Sbjct: 112 DAIAHG 117


>gi|224372660|ref|YP_002607032.1| NAD+ synthetase [Nautilia profundicola AmH]
 gi|223589516|gb|ACM93252.1| NAD+ synthetase [Nautilia profundicola AmH]
          Length = 278

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 59/206 (28%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+VVA L K+           L ++ KA        +   V DA ++C+  
Sbjct: 43  ICGLSGGIDSAVVAVLAKK----------ALGDNFKAFLLPSQFSSKSSVEDALKLCEKF 92

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD------LLSVTRQLG 137
           ++ H             I P  ++Y       P  D  R   FS       L   + +LG
Sbjct: 93  DIDH---------ETISIAPLLNAY-------PIDDKVRFGNFSARMRMAILYDKSAELG 136

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A V+ T +  +S L +G                       + T    L     P+GD+ K
Sbjct: 137 ALVIGTSN--KSELLLG-----------------------YGTLFGDLASALNPIGDLYK 171

Query: 198 ESVRDLAREMGL--DIADKSDSQDIC 221
             + + A  +G+  +I +K  S D+ 
Sbjct: 172 TEIFEFAEYLGVNEEIINKPPSADLW 197


>gi|254472503|ref|ZP_05085903.1| argininosuccinate synthase [Pseudovibrio sp. JE062]
 gi|211958786|gb|EEA93986.1| argininosuccinate synthase [Pseudovibrio sp. JE062]
          Length = 414

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 21/150 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  ARR  
Sbjct: 8   KVVLAYSGGLDTSIILKWLQAEYGCEVVTFTADL-------------GQGEELEPARRKA 54

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ +  + GA
Sbjct: 55  ELLGIREIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAEETGA 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168
           D +A G   +     G+D  R  + C  ++
Sbjct: 115 DAVAHGATGK-----GNDQVRFELACYALN 139


>gi|163839539|ref|YP_001623944.1| argininosuccinate synthase [Renibacterium salmoninarum ATCC 33209]
 gi|187470631|sp|A9WQ90|ASSY_RENSM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|162953015|gb|ABY22530.1| argininosuccinate synthase [Renibacterium salmoninarum ATCC 33209]
          Length = 420

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDV 73
           P   R+V+A SGG+D+SV    + +  G +VI V +   Q   S +  +++   C     
Sbjct: 15  PVTDRIVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQGGESLETVRQRALGCGA--- 71

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
                      V  YV D  + F N   +P   + A  +   P V   +R V    L+  
Sbjct: 72  -----------VEAYVADARDEFANEYCMPTLKANALYQGHYPLVSAISRPVIVKHLVKA 120

Query: 133 TRQLGADVLATG 144
            R+ GA  +A G
Sbjct: 121 AREFGATTVAHG 132


>gi|110816273|sp|Q55468|QUEC_SYNY3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 232

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 27/199 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            VV +SGG+DS+ VAA+ KR+GY VI ++   Y  R   + + +    Q +         
Sbjct: 5   AVVLLSGGLDSATVAAIAKREGYRVIALSFN-YGQRHDRELRAAADIVQALGIPEHFSIN 63

Query: 83  INVSHY----VFDYEERFRNAVIVP--FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++++ +    + D ++      + P    S+Y  G           TV  +  LS+    
Sbjct: 64  LDLAQWGGSSLTDRQQTLPQTGVEPDIIPSTYVPG---------RNTVFIALGLSLAEAK 114

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT---TQQQLCDLRFPLG 193
           GA+ +  G  I +  Y G         CRP  L   Q     ++    + +   L  PL 
Sbjct: 115 GAEAVFLG--INAIDYSGYPD------CRPEYLATYQQLAALSSKVGVEGRPIQLLAPLI 166

Query: 194 DMKKESVRDLAREMGLDIA 212
           ++ K  +   A E+G+ IA
Sbjct: 167 ELSKVDIVHKALELGVPIA 185


>gi|255020131|ref|ZP_05292201.1| Queuosine Biosynthesis QueC ATPase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970424|gb|EET27916.1| Queuosine Biosynthesis QueC ATPase [Acidithiobacillus caldus ATCC
           51756]
          Length = 228

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 33/202 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            +V +SGG+DS+ V A+ +  G+ +  ++   Y  R A+          ++  AR++ + 
Sbjct: 8   AIVLLSGGLDSATVLAIAREAGFALHALSFD-YGQRHAT----------ELQFARKLAEA 56

Query: 83  INV-SHYVFDYEERFRNA-------VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             V SH V   + R   A       + VP     AA   P+  V    T+  S  L++  
Sbjct: 57  AGVRSHRVLKMDLRIFGASALTDERIAVP--EEPAAAGIPITYVPARNTLFLSYALALAE 114

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT----QQQLCDLRF 190
            LG   +  G  + S+ Y G         CRP  ++R Q     AT     + Q   +  
Sbjct: 115 VLGVLDIFIG--VNSQDYSGYPD------CRPEFIQRFQELAQVATVLGTEKGQKLSIHA 166

Query: 191 PLGDMKKESVRDLAREMGLDIA 212
           PL  + K  +     E+G+D A
Sbjct: 167 PLQYLSKAQIIRRGLELGVDYA 188


>gi|296111878|ref|YP_003622260.1| argininosuccinate synthase [Leuconostoc kimchii IMSNU 11154]
 gi|295833410|gb|ADG41291.1| argininosuccinate synthase [Leuconostoc kimchii IMSNU 11154]
          Length = 408

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          ++V+A SGG+D+SV    LK  GYD+I V L +
Sbjct: 4  KLVLAYSGGLDTSVAIPWLKDKGYDIIAVVLNV 36


>gi|307942550|ref|ZP_07657898.1| argininosuccinate synthase [Roseibium sp. TrichSKD4]
 gi|307774189|gb|EFO33402.1| argininosuccinate synthase [Roseibium sp. TrichSKD4]
          Length = 406

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+ + G +V+  T  L               G+++  AR+  
Sbjct: 8   KVVLAYSGGLDTSIILKWLQTEFGCEVVTFTADL-------------GQGEELEPARKKA 54

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + A  E   L      R +    L+ +  + GA
Sbjct: 55  EMLGIKEIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAEETGA 114

Query: 139 DVLATG 144
           D +A G
Sbjct: 115 DAIAHG 120


>gi|152990287|ref|YP_001356009.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2]
 gi|151422148|dbj|BAF69652.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2]
          Length = 626

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 18/80 (22%)

Query: 19  KDMRVVVAMSGGVDSSV-------VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           K+ ++V+ +SGG+DS++       V  +L++   D++GV++  + +  A+K+        
Sbjct: 334 KETKLVIGVSGGLDSTLALLVCAKVCEILQKPYSDIVGVSMPGFGTTDATKK-------- 385

Query: 72  DVYDARRVCDTINVSHYVFD 91
               AR++C+ I V++   D
Sbjct: 386 ---SARKLCEAIGVTYKQID 402


>gi|224073526|ref|XP_002195318.1| PREDICTED: argininosuccinate synthetase 1 [Taeniopygia guttata]
          Length = 397

 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVY 74
          VV+A SGG+D+S +   LK  GYDV+     +      +A++RK      + VY
Sbjct: 8  VVLAYSGGLDTSCILVWLKEQGYDVVAYLANIGQKEDFEAARRKALALGAKKVY 61


>gi|219852896|ref|YP_002467328.1| argininosuccinate synthase [Methanosphaerula palustris E1-9c]
 gi|219547155|gb|ACL17605.1| Argininosuccinate synthase [Methanosphaerula palustris E1-9c]
          Length = 395

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 23  VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++A SGG+D+S+   LLK R GYD + VT+ +   + A          +D+  A    +
Sbjct: 6   VILAFSGGLDTSICVPLLKERYGYDRV-VTVAVDVGQTA----------EDINTATEKGN 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I   H+  D ++RF    + P   +  + E         R +   +++ + R  GA  +
Sbjct: 55  LIADKHFTIDVKDRFVAEHLFPSIKANGSYEGYPMGTSLARPLIAEEIVKIARAEGATAV 114

Query: 142 ATG 144
           A G
Sbjct: 115 AHG 117


>gi|254425319|ref|ZP_05039037.1| asparagine synthase (glutamine-hydrolyzing) [Synechococcus sp. PCC
           7335]
 gi|196192808|gb|EDX87772.1| asparagine synthase (glutamine-hydrolyzing) [Synechococcus sp. PCC
           7335]
          Length = 496

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V V +SGG+DSS+VAAL+K+   ++   ++ L +S              D+  AR V
Sbjct: 219 DVPVGVFLSGGLDSSIVAALMKQQVKELHSFSVGLSHS-------------PDLRAARLV 265

Query: 80  CDTINVSHYVFDYEERFRNAV---IVPFASSY--AAGETPLPCVDCNR 122
            + +   H+ + Y E     V   ++ +  SY  A   + +PC   +R
Sbjct: 266 AEHLGTVHHEYVYSEAEMQTVLSDVIYYLESYDPALVRSAIPCYMVSR 313


>gi|119504421|ref|ZP_01626501.1| hypothetical protein MGP2080_01075 [marine gamma proteobacterium
           HTCC2080]
 gi|119459929|gb|EAW41024.1| hypothetical protein MGP2080_01075 [marine gamma proteobacterium
           HTCC2080]
          Length = 340

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
           F ++  F++  I  F S Y  GE  L  + C R    S LL+  R++ AD+ A G+ +R 
Sbjct: 147 FVHKRYFKSGKISSFRSEYYVGEALLALLACYRITGDSILLNTVREVEADLAAEGYGVRE 206

Query: 150 R 150
           +
Sbjct: 207 Q 207


>gi|329957022|ref|ZP_08297590.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
 gi|328523779|gb|EGF50871.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
          Length = 435

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG   A  +++  +  
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLK----AIGDNLVCVHVNHGLMRKGESEAVIEIFKNK-- 193

Query: 80  CDTINVSHYVFDYEERF 96
              +N +    D  +RF
Sbjct: 194 ---LNANLVYVDATDRF 207


>gi|212224868|ref|YP_002308104.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009825|gb|ACJ17207.1| ATPase [Thermococcus onnurineus NA1]
          Length = 305

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSC 67
           D RV+V +SGG DS+V A +LK+ GYD+  + + L    Y+ +     K  C
Sbjct: 49  DERVLVVVSGGKDSAVTAYVLKKLGYDIECLHINLGIGEYSEKSEEYAKRQC 100


>gi|255535292|ref|YP_003095663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341488|gb|ACU07601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 178

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG 293
            +G ++G H G   + +GQR+ +GV     PL+V+ +D   +RV VG
Sbjct: 42  FDGFLVGEHRGTSTFQLGQRKRIGVGGKSAPLYVIGIDDAENRVFVG 88


>gi|118576679|ref|YP_876422.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Cenarchaeum symbiosum A]
 gi|118195200|gb|ABK78118.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Cenarchaeum symbiosum A]
          Length = 336

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            PK  +VV  +SGG+DS +   ++++ G++V  V ++   +       G  C     ++ 
Sbjct: 3   EPKKKKVVALLSGGLDSQLAVKMMQKQGFEVSAVAIK---TPFCDFDCGRGCG----FEI 55

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +  D + V+       + +   +  P    + AG    PC+DC R + F        ++
Sbjct: 56  HKRADDLGVNLKTVYLGDEYIEMLKKP-KHGFGAGMN--PCIDC-RAMMFEAAKKHMDEI 111

Query: 137 GADVLATGHYIRSR 150
           GA+ + +G  +  R
Sbjct: 112 GAEFIISGEVVGQR 125


>gi|134301725|ref|YP_001121693.1| NAD+ synthetase [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|134049502|gb|ABO46573.1| NAD+ synthetase [Francisella tularensis subsp. tularensis
          WY96-3418]
          Length = 249

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+V A+L  + G     + L   N++            QD+ DA  + + +
Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81

Query: 84 NVSHYV 89
          N+ HY 
Sbjct: 82 NIEHYT 87


>gi|154249688|ref|YP_001410513.1| PP-loop domain-containing protein [Fervidobacterium nodosum
          Rt17-B1]
 gi|154153624|gb|ABS60856.1| PP-loop domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 323

 Score = 36.6 bits (83), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
          D     K+ +V+VA+S G DSS V   LK+ GY+V G+ L++     A++R
Sbjct: 40 DFKMFQKEDKVLVAVSSGKDSSAVLYALKKLGYNVEGLFLKMGRHTNAAER 90


>gi|260174366|ref|ZP_05760778.1| putative GMP synthase (glutamine-hydrolyzing) [Bacteroides sp. D2]
 gi|315922634|ref|ZP_07918874.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696509|gb|EFS33344.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 434

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG         D   V
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGES------EDVVEV 189

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + +  +    D  +RF N +
Sbjct: 190 FNQLKANLVYVDVTDRFLNKL 210


>gi|154174151|ref|YP_001409218.1| thiamine biosynthesis protein:ExsB [Campylobacter curvus 525.92]
 gi|112803489|gb|EAU00833.1| thiamine biosynthesis protein:ExsB [Campylobacter curvus 525.92]
          Length = 329

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 21/134 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----LYNSRKASKRKGSCCAGQDVYDA 76
           M+ +   SGG+DS +   ++   G +V+ + +     +   + A   + +  AG      
Sbjct: 1   MKALALFSGGLDSMLAMKIISDQGIEVVALYMDTGFGVDEDKHAVLERRANLAGAKF--- 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D  N   Y+ D          V F+  Y  G+   PC+DC+  + F   L++ +  
Sbjct: 58  -KVVDMRN--EYLRD----------VLFSPKYGYGKQFNPCIDCHGYM-FKTALNMLKSE 103

Query: 137 GADVLATGHYIRSR 150
           GAD + TG  +  R
Sbjct: 104 GADFIITGEVLGQR 117


>gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304]
 gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 304

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 22/130 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           R+ +A+SGG DS  +A +L      R   +   +T+   +   A  R  +      V  A
Sbjct: 50  RIAIALSGGKDSVTLAFVLNKLYGFRSDLEFFAITI---DEGIAGYRPPT------VEIA 100

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           R+V + + + H V  +EE F   +               PC  C    K+  LL+ T R+
Sbjct: 101 RKVTEQLGMEHLVVSFEENFGMTL-----DEMVKRGDKKPCTYCGVFRKY--LLNRTARE 153

Query: 136 LGADVLATGH 145
           +GA  LATGH
Sbjct: 154 MGATKLATGH 163


>gi|312876999|ref|ZP_07736973.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796230|gb|EFR12585.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 30/194 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + +SGGVDS+ +   +K  GY+V  ++  LY  + +          +++  A++ C  ++
Sbjct: 1   MVLSGGVDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKKTCKLLS 49

Query: 85  VSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V H + D   + E   +A+  P       Y    T    V  NR +    LLS++     
Sbjct: 50  VPHKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNMV---LLSISAAYAI 106

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            + A       +L+ G       I   CR   +E  ++    A       +L  P  DMK
Sbjct: 107 SLGA------KKLFYGAHAGDHPIYPDCRKEFVEAMKNALYLADYIG--LELEAPYVDMK 158

Query: 197 KESVRDLAREMGLD 210
           KE +     E+G+D
Sbjct: 159 KEDILRRGLELGVD 172


>gi|224417967|ref|ZP_03655973.1| asparagine synthase (glutamine-hydrolyzing) [Helicobacter
           canadensis MIT 98-5491]
 gi|253827304|ref|ZP_04870189.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
 gi|313141510|ref|ZP_07803703.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
 gi|253510710|gb|EES89369.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
 gi|313130541|gb|EFR48158.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
          Length = 625

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           D+ V V +SGGVDSS+V A+LK  GYD    ++    S
Sbjct: 259 DVNVGVCLSGGVDSSLVCAVLKESGYDFETFSISFMES 296


>gi|62258565|gb|AAX77805.1| unknown protein [synthetic construct]
          Length = 284

 Score = 36.6 bits (83), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L   N++            QD+ DA  + + +
Sbjct: 59  VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 107

Query: 84  NVSHYVFDYEERFR 97
           N+ HY    +  + 
Sbjct: 108 NIEHYTISIQPAYE 121


>gi|312792427|ref|YP_004025350.1| exsb protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179567|gb|ADQ39737.1| exsB protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 30/194 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + +SGGVDS+ +   +K  GY+V  ++  LY  + +          +++  A++ C  ++
Sbjct: 1   MVLSGGVDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKKTCKLLS 49

Query: 85  VSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V H + D   + E   +A+  P       Y    T    V  NR +    LLS++     
Sbjct: 50  VPHKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNMV---LLSISAAYAI 106

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            + A       +L+ G       I   CR   +E  ++    A       +L  P  DMK
Sbjct: 107 SLGA------KKLFYGAHAGDHPIYPDCRKEFVEAMKNALYLADYIG--LELEAPYVDMK 158

Query: 197 KESVRDLAREMGLD 210
           KE +     E+G+D
Sbjct: 159 KEDILRRGLELGVD 172


>gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase [Herbaspirillum seropedicae SmR1]
 gi|300076643|gb|ADJ66042.1| NH(3)-dependent NAD(+) synthetase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 565

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 22/138 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VVV  SGG+DS+V  AL        +V+ VT+    S   S           V D+  +
Sbjct: 299 KVVVGSSGGIDSAVTIALAAEALGAQNVVAVTMPSVFSSAGS-----------VSDSETL 347

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           C  + V+   H + D    F +     FA+++ A    LP  +    V+ + L+  +   
Sbjct: 348 CQALGVTLFRHPIADLVREFEDG----FATAFGAPLRGLPLENLQARVRGAILMEYSNGY 403

Query: 137 GADVLATGHYIRSRLYVG 154
            A +L TG+  +S + VG
Sbjct: 404 DALLLTTGN--KSEISVG 419


>gi|322370893|ref|ZP_08045448.1| NH(3)-dependent NAD(+) synthetase [Haladaptatus paucihalophilus
           DX253]
 gi|320549570|gb|EFW91229.1| NH(3)-dependent NAD(+) synthetase [Haladaptatus paucihalophilus
           DX253]
          Length = 557

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 46/190 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSS+ AAL        +V+GV +    +  AS+            DAR + 
Sbjct: 300 VVVGLSGGIDSSITAALAADALGPENVLGVGMPTRYTSDASE-----------IDARELA 348

Query: 81  DTINVSHYVFDYEERFR--NAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLG 137
           + + +       E  F      + P        ETP +   +    ++ + L+++  + G
Sbjct: 349 ENLGIDFLDLPIENTFEAFERELTPILD-----ETPGVTEENVQARIRATTLMAIANEQG 403

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             +LAT +  RS L VG                       + T    +C    P+ D  K
Sbjct: 404 RLLLATSN--RSELAVG-----------------------YTTLYGDMCGALAPIADCPK 438

Query: 198 ESVRDLAREM 207
             V DLAR +
Sbjct: 439 TFVYDLARHL 448


>gi|312110082|ref|YP_003988398.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215183|gb|ADP73787.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 13/72 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          VV +SGG+DS+VVA L+KR   D  +G+ +   ++ K            D+ DA +V ++
Sbjct: 25 VVGISGGIDSAVVAHLIKRAFPDNSLGLIMPCKSNPK------------DMEDALKVVES 72

Query: 83 INVSHYVFDYEE 94
            + H++ D  E
Sbjct: 73 CGIKHFIIDLTE 84


>gi|295399358|ref|ZP_06809340.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978824|gb|EFG54420.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 246

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 13/72 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          VV +SGG+DS+VVA L+KR   D  +G+ +   ++ K            D+ DA +V ++
Sbjct: 25 VVGISGGIDSAVVAHLIKRAFPDNSLGLIMPCKSNPK------------DMEDALKVVES 72

Query: 83 INVSHYVFDYEE 94
            + H++ D  E
Sbjct: 73 CGIKHFIIDLTE 84


>gi|237712767|ref|ZP_04543248.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409743|ref|ZP_06086281.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|294645358|ref|ZP_06723069.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|298483134|ref|ZP_07001314.1| GMP synthase, C- domain protein [Bacteroides sp. D22]
 gi|229447179|gb|EEO52970.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352396|gb|EEZ01498.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|292639296|gb|EFF57603.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|295084597|emb|CBK66120.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Bacteroides xylanisolvens XB1A]
 gi|298270651|gb|EFI12232.1| GMP synthase, C- domain protein [Bacteroides sp. D22]
          Length = 435

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG      +V+  +  
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEDVVEVFSNQLK 195

Query: 80  CDTINVSHYVFDYEERFRN 98
            + I V     D  +RF N
Sbjct: 196 ANLIYV-----DVTDRFLN 209


>gi|208779928|ref|ZP_03247272.1| NAD+ synthetase [Francisella novicida FTG]
 gi|208744383|gb|EDZ90683.1| NAD+ synthetase [Francisella novicida FTG]
          Length = 249

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+V A+L  + G     + L   N++            QD+ DA  + + +
Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81

Query: 84 NVSHY 88
          N+ HY
Sbjct: 82 NIEHY 86


>gi|88855466|ref|ZP_01130130.1| argininosuccinate synthase [marine actinobacterium PHSC20C1]
 gi|88815373|gb|EAR25231.1| argininosuccinate synthase [marine actinobacterium PHSC20C1]
          Length = 399

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV    LK   G +V+ + + +               G+++ D R R 
Sbjct: 4   RVVLAYSGGLDTSVGIGWLKDATGKEVVALAIDVGQ------------GGENMDDIRQRA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D   V   V D ++ F +  ++P   + A  +   P V   +R V    L    + LGA
Sbjct: 52  LDCGAVESIVIDAKDEFADDFLMPALKANALYQKRYPLVSALSRPVISRHLALTAKALGA 111

Query: 139 DVLATG 144
           D +A G
Sbjct: 112 DSVAHG 117


>gi|288957455|ref|YP_003447796.1| queuosine biosynthesis protein [Azospirillum sp. B510]
 gi|288909763|dbj|BAI71252.1| queuosine biosynthesis protein [Azospirillum sp. B510]
          Length = 242

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 36/205 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            VV +SGG+DS+ V A+ K +GY V  ++ + Y  R + + +           ARRV   
Sbjct: 10  AVVLVSGGLDSTTVLAIAKAEGYRVNALSFR-YGQRHSVELEA----------ARRVVAA 58

Query: 83  INVS-HYVFDYEER------FRNAVIVPFASSYAAGET------PLPCVDCNRTVKFSDL 129
           + V  H + D + R        +A+ VP   S A  E       P+  V    TV  S  
Sbjct: 59  MGVERHVIADIDLRAFGGSALTDAIAVPKHDSAADLEAELGQGIPVTYVPARNTVFLSFA 118

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L+    LGA  L  G  + +  Y G         CRP  +   ++    AT        R
Sbjct: 119 LAWAETLGASDLFIG--VNALDYSGYPD------CRPEYIAAFETLANLATKAGVEGGSR 170

Query: 190 F----PLGDMKKESVRDLAREMGLD 210
           F    PL  + K ++     E+G+D
Sbjct: 171 FRIHAPLMTLDKAAIVRRGLELGVD 195


>gi|301102819|ref|XP_002900496.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101759|gb|EEY59811.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 305

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 34/187 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVA SGGVDSS+ AAL+            Q++ ++  A   + +  +   +  AR V   
Sbjct: 33  VVAFSGGVDSSLAAALV-----------FQVFPDTGAACIGRSAALSSVQLRQAREVASH 81

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V  +    +E      +     S         C  C +T  +S L  V      ++  
Sbjct: 82  IGVPLWECHTDEAKLEGYVANQGKS---------CYYC-KTTLYSTLNQVAEFAWQEMQQ 131

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G  I+  LY G +   +      +DL R     L A T+ ++     PL  + K+ VRD
Sbjct: 132 HGEEIKPVLYNGTNADDQ------LDLTR---VGLVAATEFEVVS---PLSGLTKQEVRD 179

Query: 203 LAREMGL 209
           +A+ +GL
Sbjct: 180 VAKYLGL 186


>gi|323705926|ref|ZP_08117497.1| NAD+ synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534724|gb|EGB24504.1| NAD+ synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 545

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 21/137 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + VV +SGG+DS+V  AL    L R+  +V+GV++    S + SK            DAR
Sbjct: 291 KAVVGLSGGIDSAVTCALAVKALGRE--NVLGVSMPSRYSSEGSKD-----------DAR 337

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   +N+ + V   E+ F++ + +        G+  L   +    ++ + L+ ++ + G
Sbjct: 338 DLAQNLNIEYRVIPIEDVFKSYISIFNKDGNIVGD--LAEENLQARIRGNYLMFISNREG 395

Query: 138 ADVLATGHYIRSRLYVG 154
             VL TG+  +S + VG
Sbjct: 396 HMVLTTGN--KSEIAVG 410


>gi|227488144|ref|ZP_03918460.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541542|ref|ZP_03971591.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227092006|gb|EEI27318.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182698|gb|EEI63670.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 401

 Score = 36.2 bits (82), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 22  RVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79
           RVV+A SGG+D+SV +  L K+ G +V+ VT+ L               G+D+   R R 
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKQTGGEVVAVTIDLGQ------------GGEDLETVRQRA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            D   V   V D  + F     VP   A+    GE PL     +R +    L+   ++ G
Sbjct: 52  LDCGAVEAIVVDARDEFAEEYCVPTIQANGMYMGEYPLLSA-ISRPLIVKHLVQAAKEHG 110

Query: 138 ADVLATG 144
              ++ G
Sbjct: 111 GTHVSHG 117


>gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic
           archaeon RC-I]
          Length = 308

 Score = 36.2 bits (82), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGG DS+V  ++L     D       +  S             + +  A+ +CD 
Sbjct: 50  IAVAMSGGKDSAVTLSIL----VDTFTTRSNIKFSAITVDEGIEGYRNESIPYAKELCDR 105

Query: 83  INVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + V HYV  ++E   + +  I+      A+      C  C    + + L    R++GA+ 
Sbjct: 106 LGVPHYVVSFKEEIGHTLDDILSRERKEAS------CTYCG-VFRRTLLNRKAREIGANK 158

Query: 141 LATGHYI 147
           LATGH +
Sbjct: 159 LATGHNL 165


>gi|56421131|ref|YP_148449.1| NH(3)-dependent NAD+ synthetase [Geobacillus kaustophilus HTA426]
 gi|261418389|ref|YP_003252071.1| NAD+ synthetase [Geobacillus sp. Y412MC61]
 gi|319767652|ref|YP_004133153.1| NAD+ synthetase [Geobacillus sp. Y412MC52]
 gi|56380973|dbj|BAD76881.1| NH(3)-dependent NAD+ synthetase [Geobacillus kaustophilus HTA426]
 gi|261374846|gb|ACX77589.1| NAD+ synthetase [Geobacillus sp. Y412MC61]
 gi|317112518|gb|ADU95010.1| NAD+ synthetase [Geobacillus sp. Y412MC52]
          Length = 246

 Score = 36.2 bits (82), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV +SGG+DS+VVA L+KR    D +G+ +   ++ K            D+ DA +V  
Sbjct: 24  AVVGISGGIDSAVVAHLIKRAFPDDSLGLIMPCKSNPK------------DMEDALKVVK 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           +  + H V D  E  R       A   A GE
Sbjct: 72  SCGIRHLVIDLTEAHRTLFGAVEAELKAIGE 102


>gi|297529241|ref|YP_003670516.1| NAD+ synthetase [Geobacillus sp. C56-T3]
 gi|297252493|gb|ADI25939.1| NAD+ synthetase [Geobacillus sp. C56-T3]
          Length = 246

 Score = 36.2 bits (82), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV +SGG+DS+VVA L+KR    D +G+ +   ++ K            D+ DA +V  
Sbjct: 24  AVVGISGGIDSAVVAHLIKRAFPDDSLGLIMPCKSNPK------------DMEDALKVVK 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           +  + H V D  E  R       A   A GE
Sbjct: 72  SCGIRHLVIDLTEAHRTLFGAVEAELKAIGE 102


>gi|294807986|ref|ZP_06766763.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294444799|gb|EFG13489.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 450

 Score = 36.2 bits (82), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG      +V+  +  
Sbjct: 155 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEDVVEVFSNQLK 210

Query: 80  CDTINVSHYVFDYEERFRNAV 100
            + I V     D  +RF N +
Sbjct: 211 ANLIYV-----DVTDRFLNKL 226


>gi|289191725|ref|YP_003457666.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938175|gb|ADC68930.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22]
          Length = 253

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 44/200 (22%)

Query: 23  VVVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSSV A L +K  G D V+G+ +   ++             +D+  A+ V 
Sbjct: 24  VVVGLSGGIDSSVTAYLCVKALGKDKVLGLIMPEKHTNP-----------RDIEHAKMVA 72

Query: 81  DTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + + + + + D  +     ++  F A  Y   +      D N   +    L        +
Sbjct: 73  ENLGIKYIISDITD-----ILKAFGAGGYVPTKEFDKMADGNLKARIRMCLLYYFANKYN 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +L  G   +S +YVG   K   I                       CD+R P+G++ K  
Sbjct: 128 LLVAGTSNKSEIYVGYGTKHGDIA----------------------CDIR-PIGNLFKTE 164

Query: 200 VRDLAREMGL--DIADKSDS 217
           VR+LA+ +G+  +I +K  S
Sbjct: 165 VRELAKYLGVPKEIIEKPPS 184


>gi|222824480|ref|YP_002576054.1| hypothetical protein Cla_1498 [Campylobacter lari RM2100]
 gi|222539701|gb|ACM64802.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 327

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 39/203 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY------NSRKASKRKGSCCAGQDVY 74
           M+ +   SGG+DS +   L+   G +V  + + +        S   +KR     A  ++ 
Sbjct: 1   MKALALFSGGLDSMLAIKLITSQGIEVKALNINIGFGGTSDKSEIIAKRAAMAGASFEMI 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVI--VPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           D                     RNA +  V F+  Y  G+   PC+DC+    F   LS+
Sbjct: 61  DV--------------------RNAYLQEVLFSPQYGYGKHFNPCIDCH-AFMFKTALSM 99

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +   A  + TG  +  R       +R   M +   L  D+   +     + +C    PL
Sbjct: 100 LKDENASFIITGEVVGQRPM----SQRNDAMAKVKKLALDEEDLIL----RPMCAKNLPL 151

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
              ++E   D  RE   +I+ +S
Sbjct: 152 TKPEREGWVD--REKLENISGRS 172


>gi|86160461|ref|YP_467246.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776972|gb|ABC83809.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 18/210 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQ-DVYDA 76
           K  + +  +SGG+DS++  AL++  G +V  V     +   +  +RKG    G     +A
Sbjct: 3   KQGKAIALISGGLDSTLALALVRGQGIEVKAVNFYTGFCITETQRRKGGRPDGTVPQNEA 62

Query: 77  RRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R    + V   YV      + + ++ P    +  G    PCVDC R         +   
Sbjct: 63  LRAAADLEVDIEYVDISGPGYFDMLVNP---RWGYGANANPCVDC-RVFMMRKAKEIMEA 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD + TG  +  R        +RR   R ++ E      L      +L     P    
Sbjct: 119 EGADFIFTGEVLGQR-----PKSQRRDTLRIIERESGLDGRLLRPLSAKLLPPTIP---- 169

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQ 225
           +KE + D  RE  LDI+ +  ++ +   ++
Sbjct: 170 EKEGIVD--RERLLDISGRGRTRQMALAEE 197


>gi|114705909|ref|ZP_01438812.1| argininosuccinate synthase [Fulvimarina pelagi HTCC2506]
 gi|114538755|gb|EAU41876.1| argininosuccinate synthase [Fulvimarina pelagi HTCC2506]
          Length = 405

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 17/131 (12%)

Query: 18  PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           P+D++ VV+A SGG+D+S++   L+ +   +V+  T  L               G+++  
Sbjct: 4   PRDVKKVVLAYSGGLDTSIILKWLQTELNAEVVTFTADL-------------GQGEELGP 50

Query: 76  ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133
           AR   +   V   Y+ D  E F    + P   + A  E T L      R +    L+ + 
Sbjct: 51  AREKAERAGVKDIYIEDVREEFCRDFVFPMFRANAVYEGTYLLGTSIARPLISKRLVEIA 110

Query: 134 RQLGADVLATG 144
           R+ GAD +A G
Sbjct: 111 RETGADAIAHG 121


>gi|220932738|ref|YP_002509646.1| NH(3)-dependent NAD(+) synthetase [Halothermothrix orenii H 168]
 gi|219994048|gb|ACL70651.1| NH(3)-dependent NAD(+) synthetase [Halothermothrix orenii H 168]
          Length = 247

 Score = 36.2 bits (82), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 46/190 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV MSGG+DS+V + L K+    + +G+ +  ++S K            D+ DAR V D 
Sbjct: 30  VVGMSGGIDSAVTSVLCKKAFKENTLGIIMPCHSSDK------------DLEDARLVADA 77

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            ++ + V D    F N                           F +LL    Q G D+  
Sbjct: 78  FDIKYIVKDLGPVFDN---------------------------FIELLGADSQTGDDMAV 110

Query: 143 TGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
               I+ RL +        R   +    D   + +   F        D+  PLG + K  
Sbjct: 111 AN--IKPRLRMTTLYYYAARNNYLVVGTDNWSELTVGYFTKYGDGGVDIA-PLGRLVKTE 167

Query: 200 VRDLAREMGL 209
           VR+LAR +G+
Sbjct: 168 VRELARYLGI 177


>gi|293369968|ref|ZP_06616535.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634886|gb|EFF53408.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 435

 Score = 36.2 bits (82), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG  L   +      RKG      +V+  +  
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEDVAEVFSNQLK 195

Query: 80  CDTINVSHYVFDYEERFRN 98
            + + V     D  +RF N
Sbjct: 196 ANLVYV-----DVTDRFLN 209


>gi|152992854|ref|YP_001358575.1| ExsB family transcriptional regulator [Sulfurovum sp. NBC37-1]
 gi|167016454|sp|A6Q9Q9|QUEC_SULNB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|151424715|dbj|BAF72218.1| transcriptional regulator, ExsB family [Sulfurovum sp. NBC37-1]
          Length = 222

 Score = 36.2 bits (82), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 81/199 (40%), Gaps = 25/199 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V  +SGG+DS++ A + + +GY++I +    Y  R  +K         ++   R++  
Sbjct: 4   KAVCIISGGMDSALSAKIAQEEGYEIIALHFN-YGQRTRNK---------ELECFRKITQ 53

Query: 82  TINVSHYV---FDYEERFRNAVIVPFASSYAAG----ETPLPCVDCNRTVKFSDLLSVTR 134
            +N S       D+ E+   + +   +     G      P+  V     +  S   ++  
Sbjct: 54  ELNASESYEIDLDFFEQIGASALTDKSIDVPIGGLEEGVPVTYVPFRNGIFLSIAAAIAE 113

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GA+ L  G        V ++       CR   +E+ Q      T  +   +++ PL  
Sbjct: 114 KHGAEALFIG--------VVEEDSSGYPDCRESYIEQMQKAINLGTKDETNIEIKMPLVS 165

Query: 195 MKKESVRDLAREMGLDIAD 213
           ++K  +   A E+G+ + D
Sbjct: 166 LRKSQIVQKAIELGVPLED 184


>gi|134045274|ref|YP_001096760.1| NH(3)-dependent NAD(+) synthetase [Methanococcus maripaludis C5]
 gi|132662899|gb|ABO34545.1| NH(3)-dependent NAD(+) synthetase [Methanococcus maripaludis C5]
          Length = 258

 Score = 36.2 bits (82), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 44/200 (22%)

Query: 23  VVVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DS++VA L +K  G + V GV +   NS    ++ G           + V 
Sbjct: 31  VVVGLSGGIDSALVAYLSVKALGKENVFGVIMPEKNSNPDDEKYG-----------KLVA 79

Query: 81  DTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +T+ +++ VFD        V+V F A  Y  G+     VD N   +             +
Sbjct: 80  ETLGINYTVFDI-----TPVLVAFGAGGYVEGKEFDRRVDANLKPRIRMTEVYYHANKKN 134

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   +S +Y+G                       + T    L      +G++ K  
Sbjct: 135 YLVAGTSNKSEIYMG-----------------------YGTKYGDLGSDFLTIGNLFKTE 171

Query: 200 VRDLAREMGL--DIADKSDS 217
           VR LA  +G+  +I DK+ S
Sbjct: 172 VRQLAGHVGVLKEIIDKAPS 191


Searching..................................................done


Results from round 2




>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039828|gb|ACT56624.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|255957544|dbj|BAH96607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957840|dbj|BAH96814.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957850|dbj|BAH96823.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957860|dbj|BAH96832.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957870|dbj|BAH96841.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957880|dbj|BAH96850.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957890|dbj|BAH96859.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957900|dbj|BAH96868.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957910|dbj|BAH96877.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957920|dbj|BAH96886.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957930|dbj|BAH96895.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957940|dbj|BAH96904.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957950|dbj|BAH96913.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957960|dbj|BAH96922.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957970|dbj|BAH96931.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957980|dbj|BAH96940.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957990|dbj|BAH96949.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958000|dbj|BAH96958.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958010|dbj|BAH96967.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958020|dbj|BAH96976.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958030|dbj|BAH96985.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958040|dbj|BAH96994.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958050|dbj|BAH97003.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958060|dbj|BAH97012.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958070|dbj|BAH97021.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958080|dbj|BAH97030.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958090|dbj|BAH97039.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958100|dbj|BAH97048.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958110|dbj|BAH97057.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958120|dbj|BAH97066.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|283362130|dbj|BAI65917.1| predicted tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Liberibacter asiaticus]
 gi|283362140|dbj|BAI65926.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362150|dbj|BAI65935.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362160|dbj|BAI65944.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362170|dbj|BAI65953.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362180|dbj|BAI65962.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362190|dbj|BAI65971.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362200|dbj|BAI65980.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362210|dbj|BAI65989.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362220|dbj|BAI65998.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362230|dbj|BAI66007.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
          Length = 408

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 408/408 (100%), Positives = 408/408 (100%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA
Sbjct: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC
Sbjct: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT
Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA
Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV
Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
           HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA
Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
           SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408


>gi|140063954|gb|ABO82466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Liberibacter asiaticus]
          Length = 408

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 407/408 (99%), Positives = 408/408 (100%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT+QLYNSRKA
Sbjct: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTVQLYNSRKA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC
Sbjct: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT
Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA
Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV
Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
           HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA
Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
           SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408


>gi|315122753|ref|YP_004063242.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496155|gb|ADR52754.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 398

 Score =  533 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 326/392 (83%), Positives = 360/392 (91%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD DKNPKDMRVVVAMSGGVDSS+VAALLKRDGYDV+GVTLQLYN  K SKRKGSCC
Sbjct: 1   MNSLDFDKNPKDMRVVVAMSGGVDSSIVAALLKRDGYDVVGVTLQLYNGGKESKRKGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQDVYDARRVCD I+V HYVFDYEERF NAVIVPFA++Y AGETPLPCVDCNRTVKF D
Sbjct: 61  AGQDVYDARRVCDAIDVPHYVFDYEERFHNAVIVPFANAYIAGETPLPCVDCNRTVKFLD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLSV R+LGADVLATGHYIRSR +VG DG RRRIMCRP+D ERDQSYFLFATTQQQLCDL
Sbjct: 121 LLSVMRRLGADVLATGHYIRSRFHVGADGVRRRIMCRPVDSERDQSYFLFATTQQQLCDL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+MKKESVRDLAREM L++ADKSDSQDICFVQ+GKYFD+VK++++ I+LEG+IVHL
Sbjct: 181 RFPLGEMKKESVRDLAREMKLEVADKSDSQDICFVQKGKYFDIVKKLSSDISLEGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQ+LGRHNGIINYTIGQRRGLG+A  +PLFVVYLDK  SRVIVGPRE+LEV RIYLREI
Sbjct: 241 SGQVLGRHNGIINYTIGQRRGLGIAASDPLFVVYLDKQGSRVIVGPREALEVRRIYLREI 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG FED VVDGFKCF KIRSSQDPV VFV+R+D GVYVDFE SE GVA+GQACVFY
Sbjct: 301 NWLGDGSFEDVVVDGFKCFAKIRSSQDPVSVFVKRDDSGVYVDFENSEEGVAAGQACVFY 360

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           +SDSN+AR+LGGG IS SKRSD VE+SL S++
Sbjct: 361 SSDSNDARILGGGFISCSKRSDKVEKSLFSIM 392


>gi|222149632|ref|YP_002550589.1| tRNA-specific 2-thiouridylase MnmA [Agrobacterium vitis S4]
 gi|221736614|gb|ACM37577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium vitis S4]
          Length = 402

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/395 (60%), Positives = 295/395 (74%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSC
Sbjct: 4   PVNTLDFDKRPEDTRVVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSC 63

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRVC+T+ + HYV DYE+RFR+ VI PF  SY AGETP+PCV CN+TVKF+
Sbjct: 64  CAGQDIDDARRVCETLGIPHYVLDYEQRFRDTVINPFMDSYIAGETPIPCVACNQTVKFA 123

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+  R+LGAD LATGHYIRSR     +    R + RP+D ERDQSYFLFATTQ+Q+  
Sbjct: 124 DLLATARELGADALATGHYIRSRATPLPNDPGHRALFRPIDSERDQSYFLFATTQEQIDY 183

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K   R LA +MGL +A K+DSQDICFV QGKY D++ ++    AL GDIVH
Sbjct: 184 LRFPLGGLSKAETRKLAEDMGLVVAQKADSQDICFVPQGKYADIINKLKPNAALSGDIVH 243

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           L+G++LG+H GI++YTIGQR+GLGVA GEPL+VVYLD  S RVIVGPRE+LE  R+YLR+
Sbjct: 244 LDGRVLGQHEGILHYTIGQRKGLGVATGEPLYVVYLDARSRRVIVGPREALETRRVYLRD 303

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           INWLGD   ED    GF CF K+RS++ P P  +  ++ G+YVD +  E GVA GQACV 
Sbjct: 304 INWLGDRAIEDEASGGFACFAKVRSTRPPAPAHLHADETGIYVDLDMGEAGVAPGQACVL 363

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ +  +ARV GGG I  S+R    E  L +++  
Sbjct: 364 YSGEGADARVYGGGFIERSERQAEAETFLKALLAG 398


>gi|295399328|ref|ZP_06809310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978794|gb|EFG54390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 371

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/382 (37%), Positives = 204/382 (53%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       + R +D ++DQ+YFL    Q+QL  + FPLG
Sbjct: 118 LSIGADYVATGHYARIEYRDGE-----YKLLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A++ GL  A K DS  ICF+ +  +   +       A  G +  L+G++ 
Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLP--AQPGIMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  +   + + V      E L    +    +N
Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D          F+C  K R  Q  + V V   +DD V V F++    V  GQA VFY
Sbjct: 291 WVSDR----KPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVIFDEPVRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +      LGGG I    R+ 
Sbjct: 347 NGE----ECLGGGTIDKVFRNG 364


>gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
 gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
          Length = 371

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 142/382 (37%), Positives = 204/382 (53%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       + R +D ++DQ+YFL    Q+QL  + FPLG
Sbjct: 118 LSIGADYVATGHYARIEYRDGE-----YKLLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A++ GL  A K DS  ICF+ +  +   +       A  G +  L+G++ 
Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLP--AQPGIMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  +   + + V      E L    +    +N
Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D          F+C  K R  Q  + V V   +DD V V F++    V  GQA VFY
Sbjct: 291 WVSDR----KPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVVFDEPVRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +      LGGG I    R+ 
Sbjct: 347 NGE----ECLGGGTIDKVFRNG 364


>gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13]
          Length = 371

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 207/382 (54%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKAPKDTRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY +     G+       M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LDLGADYLATGHYAQVEFRDGE-----YKMLRGLDENKDQTYFLNQLGQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+  GL  A K DS  ICF+ +  + + +       A  G+++ ++G++ 
Sbjct: 173 NIEKSEVREIAKRAGLATATKKDSTGICFIGERNFKEFLSGYLP--AQPGNMLTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P FV+  D   + + VG     E L    I   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGDPWFVIGKDLEKNVLYVGQSFHNELLYSDSITATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +    +   DG  C  K R  Q    V +    D+ V V F++    +  GQA VFY
Sbjct: 291 WVSN----NPPADGTVCTAKFRYRQADNKVTIQHLEDNKVKVIFDEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D      LGGG I    +++
Sbjct: 347 NGD----ECLGGGTIDHVFKNN 364


>gi|190893264|ref|YP_001979806.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CIAT 652]
 gi|229486418|sp|B3PYW4|MNMA_RHIE6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190698543|gb|ACE92628.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 408

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/399 (58%), Positives = 295/399 (73%), Gaps = 1/399 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD    +A   +GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 307 RDVNWLGDETLGEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           C  Y++  ++ARV GGG I  S+R  A E SL +++   
Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPAAEASLKALLASP 405


>gi|153008906|ref|YP_001370121.1| tRNA-specific 2-thiouridylase MnmA [Ochrobactrum anthropi ATCC
           49188]
 gi|166235072|sp|A6WZ88|MNMA_OCHA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151560794|gb|ABS14292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 398

 Score =  520 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/396 (58%), Positives = 290/396 (73%), Gaps = 5/396 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           INWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 INWLGDAPISDLPEGGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Y+ +SN ARV GGG I  S+R    EE L  ++ + 
Sbjct: 357 YSDESNTARVFGGGFIGRSEREPQAEEMLRRLVANT 392


>gi|306844591|ref|ZP_07477178.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO1]
 gi|306275035|gb|EFM56798.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO1]
          Length = 398

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/395 (58%), Positives = 290/395 (73%), Gaps = 5/395 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+DMRVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKPEDMRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|239832470|ref|ZP_04680799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824737|gb|EEQ96305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
          Length = 411

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/396 (58%), Positives = 290/396 (73%), Gaps = 5/396 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 15  SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 74

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 75  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 134

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 135 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 189

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH
Sbjct: 190 LRFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVH 249

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 250 IDGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRD 309

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           INWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 310 INWLGDAPIGDLPEGGIEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 369

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Y+ +SN ARV GGG I  S+R    EE L  ++ + 
Sbjct: 370 YSDESNTARVFGGGFIGRSEREPQAEEMLRRLVANT 405


>gi|110634566|ref|YP_674774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium sp. BNC1]
 gi|123353475|sp|Q11G66|MNMA_MESSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110285550|gb|ABG63609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chelativorans sp. BNC1]
          Length = 391

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/391 (58%), Positives = 284/391 (72%), Gaps = 5/391 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P+  RVVVAMSGGVDSSVVA LL R+GY+V+GVTLQLY+   A  R GSCC
Sbjct: 1   MNSLDLPGRPEATRVVVAMSGGVDSSVVAGLLAREGYEVVGVTLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ ++HYV DYEERFR AVI PFA SY  GETP+PCV CN+TVKFSD
Sbjct: 61  AGQDIDDARRVAETLGIAHYVLDYEERFRKAVIDPFAESYVTGETPIPCVACNQTVKFSD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLETARELGADALATGHYIRSRAN-----GAHRALYRPVDADRDQSYFLFATTQEQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K  VR +A EMGL +A K DSQDICFV +GKY DV+ ++  G A  GDIVH+
Sbjct: 176 RFPLGGMSKPQVRAIAEEMGLSVAAKHDSQDICFVPRGKYSDVITKLKPGAASPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI++YTIGQRRG+G+A GEPL+VV+LD   +RV+VGPRE+LE  R+ LR++
Sbjct: 236 DGRVLGRHEGILHYTIGQRRGIGIAAGEPLYVVHLDAEHARVVVGPREALETRRLILRQV 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E+   +G   F K+RS++ P P  +   D   +V+  + E GVA GQACV Y
Sbjct: 296 NWLGDFPLEELPANGMDLFAKVRSTRPPTPATLHNRDGSTWVELHEGETGVAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
           + D N+ARV GGG I  S+R    E  L  +
Sbjct: 356 SDDRNDARVFGGGFIERSERCADAEALLSRL 386


>gi|254719618|ref|ZP_05181429.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. 83/13]
 gi|265984628|ref|ZP_06097363.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13]
 gi|306837544|ref|ZP_07470417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella sp. NF 2653]
 gi|264663220|gb|EEZ33481.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13]
 gi|306407370|gb|EFM63576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella sp. NF 2653]
          Length = 398

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/395 (58%), Positives = 289/395 (73%), Gaps = 5/395 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQAARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD    D    G + F KIRS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKIRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|86359043|ref|YP_470935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli CFN 42]
 gi|123510891|sp|Q2K4M8|MNMA_RHIEC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86283145|gb|ABC92208.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseprotein
           [Rhizobium etli CFN 42]
          Length = 408

 Score =  518 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/399 (57%), Positives = 294/399 (73%), Gaps = 1/399 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DAR VC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARHVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSSEHPGRRALFRPADADRDQSYFLFATTQEQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD    +A   +GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 307 RDVNWLGDETLAEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTIGEAGIAPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           C  Y++  ++ARV GGG I  S+R  + E SL +++   
Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPSAEASLKALLASP 405


>gi|163758747|ref|ZP_02165834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hoeflea phototrophica DFL-43]
 gi|162284037|gb|EDQ34321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hoeflea phototrophica DFL-43]
          Length = 401

 Score =  518 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/396 (58%), Positives = 297/396 (75%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
               +NSLD+DK+P+D RVVVAMSGGVDSSVVA LL R+GYDV+GVTLQLY+   A  R 
Sbjct: 2   PGKTVNSLDIDKDPRDTRVVVAMSGGVDSSVVAGLLAREGYDVLGVTLQLYDHGAAVHRA 61

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD+ DARRVC+ + + HYV DYE+RF+ AVI PFA SY AGETP+PCV CN+TV
Sbjct: 62  GACCAGQDIDDARRVCEVLGIPHYVLDYEKRFQEAVINPFAESYVAGETPIPCVACNQTV 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF+DLL+  R LGAD LATGHYIRSR     D   RR + RP+D ERDQSYFLFATTQ Q
Sbjct: 122 KFADLLATARDLGADALATGHYIRSRANPSADNPGRRALYRPIDSERDQSYFLFATTQDQ 181

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +RFPLG++ K   R+LA EMGL +A K+DSQDICFV  GKY +V++++    AL G+
Sbjct: 182 LDYVRFPLGELPKIRTRELAEEMGLTVAQKADSQDICFVPHGKYANVIEKLRPNSALAGE 241

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IVH++G++LG H GI+++TIGQRRG+GVA+G+PL+VV+LD  S RVIVGPRE+L+  R+ 
Sbjct: 242 IVHIDGRVLGEHPGIVHFTIGQRRGIGVAVGDPLYVVHLDARSKRVIVGPREALDTRRLI 301

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR++NWLGD   +D   +G  CF K+RS++ P P  ++  +  + V+  + E GVA GQA
Sbjct: 302 LRDMNWLGDFALDDLGPEGLSCFAKVRSTRPPRPAVLRYENGEISVELVEGESGVAPGQA 361

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           CV Y++  +EARV GGG I  S+RS A E  L +++
Sbjct: 362 CVLYSAPGDEARVFGGGFIDRSERSAAAEAMLANLL 397


>gi|254470572|ref|ZP_05083976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudovibrio sp. JE062]
 gi|211960883|gb|EEA96079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudovibrio sp. JE062]
          Length = 400

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/396 (56%), Positives = 291/396 (73%), Gaps = 5/396 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L   P+D RVVVAMSGGVDSSVVA L+KR+GYDV+GVTLQLY+  +A +RKG+CC
Sbjct: 2   LNSLGLPGRPEDTRVVVAMSGGVDSSVVAGLMKREGYDVVGVTLQLYDHGEAIQRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARRV + + + HYV DYE RF+  VI  FA SY  GETP+PCV CN+TVKF D
Sbjct: 62  AGQDIHDARRVAEKLGIPHYVLDYESRFKEQVIERFADSYINGETPIPCVTCNQTVKFKD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   + LGADVL TGHY+R+ +        +  M RP+DL+RDQSYFLFATTQ+QL  L
Sbjct: 122 LLETAKDLGADVLVTGHYVRTGME-----GNQLAMFRPVDLDRDQSYFLFATTQEQLDFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K  VR+LARE  L IADK DSQDICFV QG+Y DV+ ++    A  GDIVH+
Sbjct: 177 RFPLGGMTKPEVRELAREFDLAIADKHDSQDICFVPQGRYTDVIAKLRPHAAEPGDIVHV 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+HNGII+YTIGQRRG+GVA G+PL+VV+LD +  RVIVGP+E+L  H + LRE+
Sbjct: 237 DGRVLGKHNGIIHYTIGQRRGIGVATGDPLYVVHLDADGRRVIVGPKEALATHNLLLREV 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+G G  +D   +G   + K+RS++ P    +++N + + V+    E+GVA GQACVF+
Sbjct: 297 NWIGPGALDDLPEEGITVYAKVRSTRPPTEAVLRKNGENIQVELVAGEMGVAPGQACVFF 356

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
             +  EARVLGGG I  +++ +  E +L +++G  +
Sbjct: 357 DKEGQEARVLGGGWIQRAEKQEGAEAALKALLGKSW 392


>gi|23502454|ref|NP_698581.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis 1330]
 gi|62290471|ref|YP_222264.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700395|ref|YP_414969.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis biovar
           Abortus 2308]
 gi|148559837|ref|YP_001259458.1| tRNA-specific 2-thiouridylase MnmA [Brucella ovis ATCC 25840]
 gi|189024699|ref|YP_001935467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus S19]
 gi|225628026|ref|ZP_03786062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225853065|ref|YP_002733298.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis ATCC 23457]
 gi|237815980|ref|ZP_04594977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus str. 2308 A]
 gi|254689772|ref|ZP_05153026.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 6 str.
           870]
 gi|254694261|ref|ZP_05156089.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697916|ref|ZP_05159744.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702309|ref|ZP_05164137.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 5 str. 513]
 gi|254704837|ref|ZP_05166665.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 3 str. 686]
 gi|254708251|ref|ZP_05170079.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis
           M163/99/10]
 gi|254710623|ref|ZP_05172434.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis B2/94]
 gi|254714807|ref|ZP_05176618.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M644/93/1]
 gi|254717867|ref|ZP_05179678.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M13/05/1]
 gi|254730806|ref|ZP_05189384.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 4 str.
           292]
 gi|256032116|ref|ZP_05445730.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis
           M292/94/1]
 gi|256061638|ref|ZP_05451777.1| tRNA-specific 2-thiouridylase MnmA [Brucella neotomae 5K33]
 gi|256114160|ref|ZP_05454914.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160312|ref|ZP_05458006.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M490/95/1]
 gi|256255517|ref|ZP_05461053.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti B1/94]
 gi|256258024|ref|ZP_05463560.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 9 str.
           C68]
 gi|256263452|ref|ZP_05465984.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370004|ref|YP_003107515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella microti CCM 4915]
 gi|260169251|ref|ZP_05756062.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. F5/99]
 gi|260547004|ref|ZP_05822743.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038]
 gi|260755305|ref|ZP_05867653.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str.
           870]
 gi|260758526|ref|ZP_05870874.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str.
           292]
 gi|260762350|ref|ZP_05874693.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884320|ref|ZP_05895934.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str.
           C68]
 gi|261214569|ref|ZP_05928850.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|261219714|ref|ZP_05933995.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1]
 gi|261222726|ref|ZP_05937007.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94]
 gi|261315753|ref|ZP_05954950.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M163/99/10]
 gi|261318196|ref|ZP_05957393.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94]
 gi|261322603|ref|ZP_05961800.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1]
 gi|261325648|ref|ZP_05964845.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33]
 gi|261752876|ref|ZP_05996585.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513]
 gi|261755533|ref|ZP_05999242.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686]
 gi|261758765|ref|ZP_06002474.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99]
 gi|265989227|ref|ZP_06101784.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M292/94/1]
 gi|265995479|ref|ZP_06108036.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998689|ref|ZP_06111246.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1]
 gi|294852904|ref|ZP_06793577.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026]
 gi|297248856|ref|ZP_06932574.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196]
 gi|306843064|ref|ZP_07475687.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO2]
 gi|38258585|sp|Q8CY38|MNMA_BRUSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658011|sp|Q57BT1|MNMA_BRUAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123547133|sp|Q2YQB2|MNMA_BRUA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234846|sp|A5VRW1|MNMA_BRUO2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229486334|sp|B2S746|MNMA_BRUA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811446|sp|C0REM2|MNMA_BRUMB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|23348445|gb|AAN30496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis 1330]
 gi|62196603|gb|AAX74903.1| TrmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616496|emb|CAJ11563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis biovar Abortus 2308]
 gi|148371094|gb|ABQ61073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ovis ATCC 25840]
 gi|189020271|gb|ACD72993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus S19]
 gi|225617189|gb|EEH14235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225641430|gb|ACO01344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis ATCC 23457]
 gi|237789278|gb|EEP63489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus str. 2308 A]
 gi|256000167|gb|ACU48566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella microti CCM 4915]
 gi|260096054|gb|EEW79931.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038]
 gi|260668844|gb|EEX55784.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str.
           292]
 gi|260672782|gb|EEX59603.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675413|gb|EEX62234.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str.
           870]
 gi|260873848|gb|EEX80917.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str.
           C68]
 gi|260916176|gb|EEX83037.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921310|gb|EEX87963.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94]
 gi|260924803|gb|EEX91371.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1]
 gi|261295293|gb|EEX98789.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1]
 gi|261297419|gb|EEY00916.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94]
 gi|261301628|gb|EEY05125.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33]
 gi|261304779|gb|EEY08276.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M163/99/10]
 gi|261738749|gb|EEY26745.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99]
 gi|261742629|gb|EEY30555.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513]
 gi|261745286|gb|EEY33212.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686]
 gi|262553313|gb|EEZ09147.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1]
 gi|262766592|gb|EEZ12381.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093459|gb|EEZ17509.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661424|gb|EEZ31685.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M292/94/1]
 gi|294821493|gb|EFG38492.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026]
 gi|297176025|gb|EFH35372.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196]
 gi|306286743|gb|EFM58293.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO2]
 gi|326409608|gb|ADZ66673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis M28]
 gi|326539311|gb|ADZ87526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis M5-90]
          Length = 398

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/395 (57%), Positives = 289/395 (73%), Gaps = 5/395 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|222086955|ref|YP_002545489.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Agrobacterium radiobacter K84]
 gi|254811443|sp|B9J9F7|MNMA_AGRRK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221724403|gb|ACM27559.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Agrobacterium radiobacter K84]
          Length = 399

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/396 (60%), Positives = 297/396 (75%), Gaps = 1/396 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEDTRVVVAMSGGVDSSVVAGILKRQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     D   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSADHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG M K   R LA EMGL +A K+DSQDICFV QGKY DV+ ++    AL G+IVHL
Sbjct: 181 RFPLGGMPKAETRALAEEMGLVVAKKADSQDICFVPQGKYSDVIAKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI++YTIGQRRG+GVA G+PL+VV+LD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGRHEGILHYTIGQRRGIGVATGDPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD    +A   +GF C+ K+RS++ P P  ++ + DG+YVD    E GVA GQAC  
Sbjct: 301 NWLGDEPLLEAASGEGFACYAKVRSTRPPEPAVLRADKDGIYVDLTIGEAGVAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Y++  ++ARV GGG I  S+R    E SL +++   
Sbjct: 361 YSAPGDDARVYGGGFIERSEREPMAEASLKALLASP 396


>gi|163843840|ref|YP_001628244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis ATCC 23445]
 gi|189036219|sp|B0CI68|MNMA_BRUSI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163674563|gb|ABY38674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis ATCC 23445]
          Length = 398

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/395 (57%), Positives = 289/395 (73%), Gaps = 5/395 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHSAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|327192984|gb|EGE59899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 399

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/396 (58%), Positives = 294/396 (74%), Gaps = 1/396 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD    +A   DGF C+ K+RS++ P P  +  +  G YVD    E G+A GQAC  
Sbjct: 301 NWLGDETLAEAASGDGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Y++  ++ARV GGG I  S+R  A E SL +++   
Sbjct: 361 YSAPGDDARVFGGGFIERSEREPAAEASLKALLAGP 396


>gi|319408925|emb|CBI82582.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella schoenbuchensis R1]
          Length = 409

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 292/393 (74%), Gaps = 5/393 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R GSC
Sbjct: 2   SLNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGVATHRVGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARR+ +T+N+ HYV DYEERFR AVI PF  SY  GETP+PCV CN+TVKFS
Sbjct: 62  CAGQDIEDARRIAETLNIPHYVLDYEERFREAVIDPFTESYTHGETPVPCVACNQTVKFS 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+  R+LGAD LATGHYIRSR          R + RP+D ERDQSYFLFATTQ+Q+  
Sbjct: 122 DLLATARELGADALATGHYIRSRS-----CGAHRALFRPLDAERDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLGD+ K  VR++A EMG  +ADK DSQDICFV QGKY DV+ ++       G I+H
Sbjct: 177 LRFPLGDLPKARVREIAAEMGFVVADKHDSQDICFVPQGKYSDVITKLRPESTNPGIIMH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +NGQILG H+GIINYT+GQRRG+G+A GE L+VVYLD  ++RVIVGPRE LE H+++LR+
Sbjct: 237 INGQILGEHSGIINYTVGQRRGIGIATGEALYVVYLDAENARVIVGPREMLETHKLFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD   ++   +G    VKIRS++ P P  +   +    VD  +SE GVA GQACVF
Sbjct: 297 VNWLGDEQLDNFPPNGIDVVVKIRSTRPPRPARLHYQNGVFSVDLLESESGVAPGQACVF 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +SNEARVLGGG I+ S+RS   E  L  V+
Sbjct: 357 YNENSNEARVLGGGFITHSERSAGAEAMLKQVL 389


>gi|209550765|ref|YP_002282682.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226704775|sp|B5ZNK8|MNMA_RHILW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209536521|gb|ACI56456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 399

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKQPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD     A   DGF C+ K+RS++ P P  +  +  G YVD    E G+A GQAC  
Sbjct: 301 NWLGDETLAQAATGDGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Y++  + ARV GGG I  S+R  + E SL +++   
Sbjct: 361 YSAPGDNARVFGGGFIERSEREPSAEASLKALLASP 396


>gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           halodurans C-125]
 gi|14195281|sp|Q9KDF2|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus
           halodurans C-125]
          Length = 371

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 136/375 (36%), Positives = 200/375 (53%), Gaps = 23/375 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K P+  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  
Sbjct: 3   AKRPEQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYQ 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D  +VC+ + +++Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L+   
Sbjct: 60  DVVQVCNQLGIAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAL 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY + +   G     +  + R  D  +DQ+YFL A +QQQL  + FPLG 
Sbjct: 120 TLGADYVATGHYAQVKNVDG-----QYQLIRGKDPNKDQTYFLNALSQQQLSRVMFPLGH 174

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K+ VR +A   GL  A K DS  ICF+ +  + + +       A  G++  L+G++ G
Sbjct: 175 LEKKEVRAIAERAGLATAKKKDSTGICFIGKRDFKEFLSSYLP--AQPGEMQTLDGEVKG 232

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310
            H+G++ YT+GQR+GLG+   GEP FV+  +   + + VG       L    +   ++NW
Sbjct: 233 THDGLMYYTLGQRQGLGIGGSGEPWFVIGKNLEKNILYVGQGFHHPGLYSEGLRAIKVNW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +          + F+C  K R  Q    V V    DG V V F + +  +  GQA VFY 
Sbjct: 293 I----LRRESDEPFECTAKFRYRQPDQKVTVYPQSDGAVEVLFAEPQRAITPGQAVVFYD 348

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGG I 
Sbjct: 349 GDV----CLGGGTID 359


>gi|218675488|ref|ZP_03525157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli GR56]
          Length = 399

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/396 (58%), Positives = 294/396 (74%), Gaps = 1/396 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSLEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           NWLGD    DA   +GF C+ K+RS++ P P  +  +  G YVD    E G+A GQAC  
Sbjct: 301 NWLGDETLADAASGEGFACYAKVRSTRAPAPAVLHVDSTGTYVDLTVGEAGIAPGQACAL 360

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Y++  ++ARV GGG I  S+R  + E SL +++   
Sbjct: 361 YSAPGDDARVFGGGFIERSEREPSAEASLKALLASP 396


>gi|116253697|ref|YP_769535.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|205816894|sp|Q1MC84|MNMA_RHIL3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115258345|emb|CAK09447.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 408

 Score =  515 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/399 (57%), Positives = 291/399 (72%), Gaps = 1/399 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRS      +   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 127 FADLLATAKELGADALATGHYIRSGRNPSPENPGRRALFRPADADRDQSYFLFATTQEQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY DV+ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD    +A    GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 307 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           C  Y++  + ARV GGG I  S+R  + E  L +++   
Sbjct: 367 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALLASP 405


>gi|17986711|ref|NP_539345.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|256045209|ref|ZP_05448107.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565193|ref|ZP_05835677.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|265991642|ref|ZP_06104199.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|24638318|sp|Q8YIL6|MNMA_BRUME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17982334|gb|AAL51609.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260151261|gb|EEW86355.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|263002426|gb|EEZ15001.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 398

 Score =  515 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/395 (57%), Positives = 288/395 (72%), Gaps = 5/395 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL   P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ DSN A V GGG I  S+R    EE L  ++ +
Sbjct: 357 YSDDSNAACVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
 gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. WCH70]
          Length = 371

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 141/382 (36%), Positives = 202/382 (52%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       M R +D  +DQ+YFL    Q  L  + FP+G
Sbjct: 118 LSIGADYVATGHYARVEYRDGE-----YKMLRGVDQNKDQTYFLNQLGQSVLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A++ GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLEKAQVRQIAKDAGLVTATKKDSTGICFIGERDFKEFLSNYLP--AKPGIMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  +   + + V      E L    +    +N
Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGSGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D        + F+C  K R  Q    V V   +DD V V F++    V  GQA VFY
Sbjct: 291 WVSDR----KPTNSFQCTAKFRYRQPDTGVTVHIIDDDKVEVVFDEPVRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +      LGGG I    R+ 
Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364


>gi|161619531|ref|YP_001593418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella canis ATCC 23365]
 gi|260565920|ref|ZP_05836390.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40]
 gi|189036218|sp|A9M700|MNMA_BRUC2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161336342|gb|ABX62647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella canis ATCC 23365]
 gi|260155438|gb|EEW90518.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40]
          Length = 398

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/395 (57%), Positives = 288/395 (72%), Gaps = 5/395 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSLDL    +D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+   A  R GSC
Sbjct: 2   SLNSLDLPGKSEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R LGAD LATGHYIRSR          R + RP+D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG + K  VR++A E+GL +A K DSQDICFV QGKY D++ R+    A  GDIVH
Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD  ++RVIVGPRE+LE H+++LR+
Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD    D    G + F K+RS++ P P  ++  D   +V+    E G+A GQACV 
Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
           Y+ DSN ARV GGG I  S+R    EE L  ++ +
Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391


>gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium QM B1551]
 gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium QM B1551]
          Length = 370

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/382 (36%), Positives = 205/382 (53%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     G+       M R +D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MTLGADYLATGHYARVAYRDGE-----YKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E GL  A K DS  ICF+ +  + + + +     A  G +  L+G++ 
Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +    ++
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +  +   +     C  K R  Q    V V++ +DD + V F +    +  GQA VFY
Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D      LGG  I    + +
Sbjct: 347 KDD----ECLGGATIDKVFQEE 364


>gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911]
 gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911]
          Length = 370

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/384 (36%), Positives = 205/384 (53%), Gaps = 24/384 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKSPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      + G+    M R +D  +DQ+YFL   T++QL  + FP+G
Sbjct: 118 MSLGADYLATGHYARV-----EHGENGVKMLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A++ GL  A K DS  ICF+ +  + + +       A  G +  + G+ +
Sbjct: 173 SIEKSEVREIAKKAGLATAAKKDSTGICFIGERNFKEFLGNYLP--AQPGSMETMEGETV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   G+P FV+  D   + + VG     E L    I   +++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGAGDPWFVIGKDLKRNVLYVGQGFDNEKLYSDSIIADKVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+       A  + F+C  K R  Q    V V   ++G   + F      V  GQA VFY
Sbjct: 291 WVS-----KAPGETFECTAKFRYRQPDNSVTVTLLENGQAKITFHSPIRAVTPGQAVVFY 345

Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392
             +      LGGG I     ++ +
Sbjct: 346 DGEV----CLGGGTIDRVFNNEQM 365


>gi|319781789|ref|YP_004141265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167677|gb|ADV11215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 396

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/395 (58%), Positives = 288/395 (72%), Gaps = 5/395 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCC
Sbjct: 1   MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRS    G +G +R  + RP+D +RDQSYFLFATTQ Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAQRA-LYRPVDADRDQSYFLFATTQAQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR +A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLAVAAKQDSQDICFVPQGKYSDIIAKLKPTAANPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD + +RV+VGPRE+LE H+IYLR +
Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDADRARVVVGPREALETHKIYLRNM 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    G + F K+RS++ P P  +       +V+    E G+A GQACV Y
Sbjct: 296 NWLGDGPLTDVPAGGLELFAKVRSTRPPRPAVLHHRAGATWVELVDGESGIAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           + D NEARV GGG I  S+R    E  L  +    
Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAMLTRLAARP 390


>gi|226330495|ref|ZP_03806013.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
 gi|225201290|gb|EEG83644.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  513 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK  GY V+G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTE---YCSASTDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  Y  ++   + + V   F S Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELYTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D   +  + R +D  +DQSYFL+  + +Q+    FP+G+M
Sbjct: 120 LGADYIATGHYVRRR-----DINGKSQLLRGVDNNKDQSYFLYTLSHEQIAQSLFPVGEM 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G 
Sbjct: 175 EKPEVRKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIITVDGETIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + + + F+C VK R  Q  +   V   ++D + V F+     V  GQ+ V
Sbjct: 293 LHWVS----REPITEAFRCTVKTRYRQPDIACTVTPLSEDKIEVRFDYPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 349 FYQDEV----CLGGGIIET 363


>gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61]
 gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC52]
 gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC61]
 gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC52]
          Length = 371

 Score =  513 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 145/382 (37%), Positives = 201/382 (52%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYIATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  V V V    D GV V F+     V  GQA VFY
Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDVGVTVHPLADGGVEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +      LGGG I    R+ 
Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364


>gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
           HTA426]
 gi|81557817|sp|Q5KWT8|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 371

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 144/382 (37%), Positives = 200/382 (52%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYIATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  V V V    D G  V F+     V  GQA VFY
Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +      LGGG I    R+ 
Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364


>gi|260462497|ref|ZP_05810704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031693|gb|EEW32962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
          Length = 396

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/395 (58%), Positives = 285/395 (72%), Gaps = 5/395 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCC
Sbjct: 1   MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRS    G +G   R + RP+D +RDQSYFLFATTQ Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRS----GANG-AHRALYRPVDADRDQSYFLFATTQAQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR +A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPSAANPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD   +RV+VGPRE+LE  +IYLR +
Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETRKIYLRNM 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    G + F K+RS++ P P  ++       V+    E G+A GQACV Y
Sbjct: 296 NWLGDGQLTDIPAGGIELFAKVRSTRPPRPAVLRHEAGVTSVELADGESGIAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           + D NEARV GGG I  S+R    E  L  +    
Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAMLSRLAAKP 390


>gi|197284773|ref|YP_002150645.1| tRNA-specific 2-thiouridylase MnmA [Proteus mirabilis HI4320]
 gi|227357779|ref|ZP_03842128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis ATCC 29906]
 gi|229486421|sp|B4EVG2|MNMA_PROMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194682260|emb|CAR41993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis HI4320]
 gi|227162108|gb|EEI47122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis ATCC 29906]
          Length = 367

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 201/379 (53%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK  GY V+G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTE---YCSASADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D   +  + R +D  +DQSYFL+  + QQ+    FP+G+M
Sbjct: 120 LGADYIATGHYVRRR-----DIDGKSQLLRGVDNNKDQSYFLYTLSHQQIAQSLFPVGEM 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G 
Sbjct: 175 EKPEVRKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIVTVDGETIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + + + F+C VK R  Q  +P  V   ++D + V F+     V  GQ+ V
Sbjct: 293 LHWVA----REPITEAFRCTVKTRYRQADIPCTVTPLDEDKIEVRFDYPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 349 FYQDEV----CLGGGIIET 363


>gi|241206171|ref|YP_002977267.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860061|gb|ACS57728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 403

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/399 (57%), Positives = 291/399 (72%), Gaps = 1/399 (0%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 2   APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 61

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 62  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 121

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRS      D   RR + RP D +RDQSYFLFATTQ+Q+
Sbjct: 122 FADLLATAKELGADALATGHYIRSGRNPSPDNPGRRALFRPADADRDQSYFLFATTQEQI 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY DV+ ++    AL G+I
Sbjct: 182 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 241

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR+YL
Sbjct: 242 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 301

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           R++NWLGD    +A    GF C+ K+RS++ P P  +  +  G YVD    E G+A GQA
Sbjct: 302 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDAIGTYVDLTVGEAGIAPGQA 361

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           C  Y++  + ARV GGG I  S+R  + E  L +++   
Sbjct: 362 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALLASP 400


>gi|295706703|ref|YP_003599778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium DSM 319]
 gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium DSM 319]
          Length = 370

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 205/382 (53%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     G+       M R +D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MTLGADYLATGHYARVAYRDGE-----YKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E GL  A K DS  ICF+ +  + + + +     A  G +  L+G++ 
Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +    ++
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +  +   +     C  K R  Q    V V++ +DD + V F +    +  GQA VFY
Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D      +GG  I    + +
Sbjct: 347 KDD----ECVGGATIDKVFQEE 364


>gi|24638328|sp|Q98HL0|MNMA_RHILO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 396

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/395 (58%), Positives = 286/395 (72%), Gaps = 5/395 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL   P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCC
Sbjct: 1   MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRS    G +G   R + RP+D +RDQSYFLFATTQ Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRS----GANG-AHRALYRPVDADRDQSYFLFATTQAQIDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K  VR +A EMGL +A K DSQDICFV QGKY D++ ++    A  GDIVH+
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHI 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD   +RV+VGPRE+LE H+IYLR +
Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNM 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    G + F K+RS++ P P  ++       V+    E G+A GQACV Y
Sbjct: 296 NWLGDGPLGDIPEGGLELFAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           + D NEARV GGG I  S+R    E  L  +    
Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAMLTKLAARP 390


>gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b]
 gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Exiguobacterium sp. AT1b]
          Length = 373

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 24/382 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K P++  VVV MSGGVDSSV A +LK  GY+VIG+ ++ ++    +   G C A +D  
Sbjct: 5   TKAPEETTVVVGMSGGVDSSVTAHVLKEQGYNVIGIFMKNWDD---TDENGVCTATEDYE 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   V + I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    
Sbjct: 62  DVIAVANQIGIPYYAVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDHAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LGAD +ATGHY + +   G+       + R  D  +DQ+YFL   +Q QL    FP+G 
Sbjct: 122 RLGADFVATGHYAQVKYVDGE-----HRLLRGKDDNKDQTYFLNQLSQDQLARTMFPIGH 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           M K+ VR +A E GL  A K DS  ICF+ +  + + +       +  G++  L+G + G
Sbjct: 177 MDKKDVRAIAEEAGLATAKKKDSTGICFIGERNFKEFLSEYLP--SQPGEMRTLDGVVKG 234

Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310
           RH+G++ YT+GQR GLG+   G+P FVV  D  ++ + VG     ++L    +   +++W
Sbjct: 235 RHDGLMYYTLGQRHGLGIGGDGDPWFVVGKDVENNVLFVGQGFHHDALYSDALLASKLSW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
            G      A    F+   K R  Q  VPV V   ++G V V F++ +  +  GQA VFY 
Sbjct: 295 TG-----AAPTGEFRATAKFRYRQQDVPVTVAPLENGEVLVKFDEPQRAITPGQAVVFYD 349

Query: 370 SDSNEARVLGGGIISGSKRSDA 391
            D      LGG  I  + R+  
Sbjct: 350 GDV----CLGGATIDEAYRNGK 367


>gi|289434792|ref|YP_003464664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri FSL N1-067]
          Length = 371

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +     D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTKNSDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q+QL  + FPLG
Sbjct: 118 ESLGADFVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K+ VR++A + GL  A+K DS  ICF+ +  +   +       A  G +  L+G++L
Sbjct: 173 GMEKKEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FV   D   + + V      ESL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V  R+D+   V F +    +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    +++A  + +
Sbjct: 347 DGDI----CLGGGTIDTVWKNNAKLDYV 370


>gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. C56-T3]
 gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. C56-T3]
          Length = 371

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 144/382 (37%), Positives = 200/382 (52%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYIATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--ARPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  V V V    D G  V F+     V  GQA VFY
Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +      LGGG I    R+ 
Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364


>gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria ivanovii FSL F6-596]
 gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria ivanovii FSL F6-596]
          Length = 371

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +     D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTKNSDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q+QL  + FPLG
Sbjct: 118 ESLGADFVATGHYAQVKQVGDE-----IELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  G +  LNG++L
Sbjct: 173 GMEKSEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +  +     A     +C  K R  Q    V V  R+D+   V F +    +  GQA VFY
Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    ++ A  + +
Sbjct: 347 DGDI----CLGGGTIDTVWKNGAKLDYV 370


>gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri FSL S4-171]
          Length = 371

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +     D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTKNSDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q+QL  + FPLG
Sbjct: 118 ESLGADFVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K+ VR++A + GL  A+K DS  ICF+ +  +   +       A  G +  L+G++L
Sbjct: 173 GMEKKEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FV   D   + + V      ESL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V  R+++   V F +    +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLRDNNTAEVVFAEPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    +++A  + +
Sbjct: 347 DGDI----CLGGGTIDTVWKNNAKLDYV 370


>gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planococcus donghaensis MPA1U2]
 gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planococcus donghaensis MPA1U2]
          Length = 371

 Score =  511 bits (1316), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 197/387 (50%), Gaps = 21/387 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKAPQDTRVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY +              M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 LSLGADYLATGHYAQVEHA----ENGETKMLRGKDNNKDQTYFLNQLDQHQLSKVMFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K+ VR++A E  L  A K DS  ICF+ +  + + + +     A  G +  L G  +
Sbjct: 174 HMEKKKVREIALEAELATATKKDSTGICFIGERNFKEFLGQYLP--AQPGQMETLEGVKM 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G H+G++ YTIGQR+GLG+   G+P FV+  D   + + VG     ++L    +    ++
Sbjct: 232 GTHDGLMYYTIGQRQGLGIGGAGDPWFVIGKDLERNVLYVGQNIHHDALFSDSLTAVNLS 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +  +           +C  K R  Q  V V V+   +   V F +    +  GQA VFY 
Sbjct: 292 FTSNT----PPSGILECTAKFRYRQQDVGVSVEFKGESAIVTFAEPVRAITPGQAVVFYD 347

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396
            +      LGGG I    ++ A  E +
Sbjct: 348 GE----ECLGGGTIDHVFKNGARLEYV 370


>gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. G11MC16]
 gi|166234855|sp|A4IR87|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. G11MC16]
          Length = 371

 Score =  511 bits (1316), Expect = e-143,   Method: Composition-based stats.
 Identities = 144/382 (37%), Positives = 200/382 (52%), Gaps = 23/382 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R     G+       M R  D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 MSIGADYVATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A+E GL  A K DS  ICF+ +  + + +       A  G +  L+G++ 
Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V      E L    +   ++N
Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+ D   E      F+C  K R  Q  + V V    DG   V F+     V  GQA VFY
Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDIGVMVHPLADGKAEVVFDAPARAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D      LGGG I    R+ 
Sbjct: 347 NGD----ECLGGGTIDEVFRNG 364


>gi|242373921|ref|ZP_04819495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348475|gb|EES40077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W1]
          Length = 372

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 210/379 (55%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + +D+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNEDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++EE + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +          M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E  L  A K DS  ICF+ +  + + + +     A  GD+V L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  + + + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNVLYVEQGFHHDALYSDYLVASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +G  E  +  GF+C  K R  Q    VFVQR N++ + V F++    +  GQA VFY  +
Sbjct: 293 EG--EINLEQGFECTAKFRYRQKDTKVFVQRENENSIRVTFDQPVRAITPGQAVVFYNGE 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVYKNE 365


>gi|24638313|sp|Q8U9M5|MNMA_AGRT5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  510 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/395 (58%), Positives = 294/395 (74%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE RFR  VI PFA +YA GETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         RR + RP+D +RDQS+FLFATTQ+Q+  L
Sbjct: 121 LLATAQELGADALATGHYIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL
Sbjct: 181 RFPLGGLSKAETRALAEEMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD    RVIVGPRE+LE  R+YLR++
Sbjct: 241 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG        GF CF K+RS++ P    +  +++G+YVD    E GVA GQACV Y
Sbjct: 301 NWLGDGALAADAGQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLY 360

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           ++   +ARV GGG I  S+RS   E SL +++   
Sbjct: 361 SAPGPDARVYGGGFIDRSERSVDAEASLKALLEKP 395


>gi|172058087|ref|YP_001814547.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sibiricum
           255-15]
 gi|205816866|sp|B1YJE9|MNMA_EXIS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171990608|gb|ACB61530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Exiguobacterium sibiricum 255-15]
          Length = 374

 Score =  510 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 199/387 (51%), Gaps = 23/387 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K P++  VVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  
Sbjct: 5   AKAPEETTVVVGMSGGVDSSVTAYLLKQQGYNVIGIFMKNWDD---TDENGFCTATEDYE 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    
Sbjct: 62  DVIAVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLDHAM 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LGAD +ATGHY R+    G+       + R +D  +DQ+YFL   +Q Q+    FP+G 
Sbjct: 122 RLGADFVATGHYARAVYEDGE-----HKLLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGH 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           M+K  VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  L+G+ +G
Sbjct: 177 MEKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLP--AQPGEMRTLDGKTMG 234

Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           RH+G++ YT+GQR GLG+   GEP FVV  +   + + V      E L    +Y  +I+W
Sbjct: 235 RHDGLMYYTMGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                        F+C  K R  Q   PV V+  D G + V F++ +  +  GQA VFY 
Sbjct: 295 TATM----PAGTEFRCTAKFRYRQTDTPVTVRVLDGGRLDVAFDERQRAITPGQAVVFYD 350

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396
            D      LGG  I  + ++      L
Sbjct: 351 GDV----CLGGATIDDAYKAGQALTYL 373


>gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria innocua FSL J1-023]
          Length = 371

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 198/383 (51%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  GD+  L+G++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      +SL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +          F+C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNS----EKPKTFECTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    +  A
Sbjct: 347 DGDI----CLGGGTIDTVWKKGA 365


>gi|116872941|ref|YP_849722.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123461086|sp|A0AIW1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 371

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLEEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKIGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      ESL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +  +          F+C  K R  Q    V V  R+D    V F      +  GQA VFY
Sbjct: 291 FTTNA----EKPKTFECTAKFRYRQTDTKVTVHLRSDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    +++A  + +
Sbjct: 347 DGDI----CLGGGTIDTVWKNEAKLDYV 370


>gi|223044127|ref|ZP_03614166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus capitis SK14]
 gi|314933788|ref|ZP_07841153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus caprae C87]
 gi|222442521|gb|EEE48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus capitis SK14]
 gi|313653938|gb|EFS17695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus caprae C87]
          Length = 372

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 208/379 (54%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++EE + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +          M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E  L  A K DS  ICF+ +  + + + +     A  GD+V L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  + + + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNLLYVEQGFHHDALYSDYLIASDFSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
           +   +  +  GF+C  K R  Q    VFV++ D+  + V F++    +  GQA VFY  +
Sbjct: 293 ENEID--LEHGFECTAKFRYRQKDTKVFVKKEDESSIRVTFDQPVRAITPGQAVVFYNEE 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVYKNE 365


>gi|227535218|ref|ZP_03965267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187102|gb|EEI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 471

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 101 DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 157

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 158 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 217

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D      M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 218 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 273

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H
Sbjct: 274 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 331

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 332 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 391

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W        A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 392 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 447

Query: 369 TSDSNEARVLGGGIISGSK 387
             D      LGGG I  + 
Sbjct: 448 DGD----ECLGGGTIDAAY 462


>gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J2-071]
 gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J2-071]
          Length = 371

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 136/383 (35%), Positives = 199/383 (51%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +     A     +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    ++ A
Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365


>gi|229543733|ref|ZP_04432793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coagulans 36D1]
 gi|229328153|gb|EEN93828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coagulans 36D1]
          Length = 371

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 145/391 (37%), Positives = 207/391 (52%), Gaps = 26/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MQKAPKDTRVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     G+       M R +D  +DQ+YFL    Q QL  + FP+G
Sbjct: 118 LNLGADYLATGHYARVTHQDGE-----YKMLRGVDGNKDQTYFLNQLGQYQLSRVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E GL  A+K DS  ICF+ +  + + +       A +G +  L+G+++
Sbjct: 173 DLEKPRVREIAKEAGLATANKKDSTGICFIGERNFKEFLSHYLP--AQKGLMKTLDGKVM 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G H G++ YTIGQR GLG+   GEP F V  D   + + V       +L    +   + N
Sbjct: 231 GEHEGLMYYTIGQRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKAN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+          + F+C  K R  Q    V VQ   +D V V +++    V  GQA VFY
Sbjct: 291 WVSG----KKPPEVFRCTAKFRYRQPDQKVTVQLLGNDEVKVIYDEPVRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
             +      LGG  I    ++   EE L+ V
Sbjct: 347 NGE----ECLGGATIDKIYKN---EEQLMYV 370


>gi|325063117|gb|ADY66807.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Agrobacterium sp. H13-3]
          Length = 402

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/395 (58%), Positives = 295/395 (74%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 5   VNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 64

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE RFR  VI PFA +YA GETP+PCV CN+TVKF+D
Sbjct: 65  AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 124

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         RR + RP+D +RDQS+FLFATTQ+Q+  L
Sbjct: 125 LLATAQELGADALATGHYIRSRPNPVAGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 184

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA +MGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL
Sbjct: 185 RFPLGGLSKAETRALAEDMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 244

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD    RVIVGPRE+LE  R+YLR++
Sbjct: 245 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 304

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGDG   D    GF CF K+RS++ P    +  +++G+YVD    E GVA GQACV Y
Sbjct: 305 NWLGDGALADEAGQGFACFAKVRSTRPPTEAMLHADENGIYVDLMTGEAGVAPGQACVLY 364

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           ++   +ARV GGG I  S+RS   E SL +++   
Sbjct: 365 SAPGADARVYGGGFIERSERSVDAEASLKALLEKP 399


>gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus selenitireducens MLS10]
 gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus selenitireducens MLS10]
          Length = 371

 Score =  508 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/381 (36%), Positives = 211/381 (55%), Gaps = 23/381 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K P+D R+VV MSGGVDSSV A LLK  GY+VIG+ ++ ++    +   G C A +D  
Sbjct: 4   EKRPEDTRIVVGMSGGVDSSVTAHLLKEQGYEVIGIFMKNWDD---TDEFGVCTATEDYE 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D  RVC+ +++ +Y  ++E+++ + V   F   Y +G TP P V CN+ +KF   L    
Sbjct: 61  DVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLDEYKSGRTPNPDVMCNKEIKFKAFLDHAM 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY +       DG +   + R  D  +DQ+YFL A +Q QL  + FPLGD
Sbjct: 121 TLGADYVATGHYAKVSH--TPDGVK---LLRGKDRNKDQTYFLNALSQDQLRHVLFPLGD 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR++A E GL  A K DS  ICF+ +  + + +       A  G++  L+G++ G
Sbjct: 176 IEKPRVREIAEEAGLATAGKKDSTGICFIGERNFKEFLSEYLP--AQPGNMETLDGEVKG 233

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310
            H+G++ YT+GQR+GLG+   GEP FV+  D + + ++VG      +L    +    +NW
Sbjct: 234 THDGLMYYTLGQRQGLGIGGSGEPWFVIDKDLSRNVLLVGQGFHHPALYSEGLKADGVNW 293

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  + F C VK R  Q      V    DG V + F+++E  V  GQA VFY 
Sbjct: 294 VAGS----APAERFHCTVKTRYRQQDRGATVTVEPDGSVTLMFDEAERAVTPGQAVVFYD 349

Query: 370 SDSNEARVLGGGIISGSKRSD 390
            +      LGGG I+   +S+
Sbjct: 350 DEI----CLGGGTINERIKSE 366


>gi|191638296|ref|YP_001987462.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei BL23]
 gi|190712598|emb|CAQ66604.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus casei BL23]
 gi|327382323|gb|AEA53799.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W]
 gi|327385523|gb|AEA56997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II]
          Length = 443

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 73  DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 129

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 130 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 189

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D      M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 190 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 245

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H
Sbjct: 246 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 303

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 304 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 363

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W        A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 364 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 419

Query: 369 TSDSNEARVLGGGIISGSK 387
             D      LGGG I  + 
Sbjct: 420 DGD----ECLGGGTIDAAY 434


>gi|46907740|ref|YP_014129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 4b F2365]
 gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes Clip81459]
 gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J1-194]
 gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL R2-503]
 gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HPB2262]
 gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J2-064]
 gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N1-017]
 gi|67461977|sp|Q71ZF8|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|259495831|sp|C1KVF9|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|225876575|emb|CAS05284.1| Putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL R2-503]
 gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HPB2262]
 gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J1-194]
 gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N1-017]
 gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 1816]
 gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 220]
          Length = 371

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 201/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    ++ A  + +
Sbjct: 347 DGDI----CLGGGTIDTVWKNGAKLDYV 370


>gi|217964341|ref|YP_002350019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HCC23]
 gi|254811452|sp|B8DDZ8|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HCC23]
 gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes L99]
          Length = 371

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 199/383 (51%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADFVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 AMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +     A     +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    ++ A
Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365


>gi|183599450|ref|ZP_02960943.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827]
 gi|188021697|gb|EDU59737.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 201/379 (53%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V+G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L      
Sbjct: 60  QSVCDKLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D   +  + R +D  +DQSYFL+  +  Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSYAQIAKSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G+
Sbjct: 175 EKPEVRRIAEEVGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D  ++R+IV        L    +  ++
Sbjct: 233 HEGLMYHTLGQRKGLGIGGMKEGSDEPWYVVDKDVENNRLIVAQGHEHPRLMSTGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           ++W+      + +    +C VK R  Q  +P  V   +DG V V F+     V  GQ+ V
Sbjct: 293 LDWVD----REPLTQTLRCAVKTRYRQADIPCTVTPLNDGKVEVIFDYPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 349 FYLDEV----CLGGGIIES 363


>gi|253989217|ref|YP_003040573.1| tRNA -specific 2-thiouridylase MnmA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780667|emb|CAQ83829.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus asymbiotica]
          Length = 367

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD +++  +  ++   + + V   F S Y AG TP P + CN+ +KF   L      
Sbjct: 60  QSVCDKLDIELHTVNFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+    QQ+    FP+G++
Sbjct: 120 LGADYIATGHYVRRK-----DINGKSQLLRGLDNNKDQSYFLYTLNHQQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ LG 
Sbjct: 175 EKPEVRRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIVTVDGKNLGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +V+  D  ++ +IV       SL    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGNEEPWYVIDKDIQNNILIVAQGHEHPSLMSTGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+     +  + +   C VK R  Q  +P  V   N+D + V F      V  GQ+ V
Sbjct: 293 LHWVD----KQPLTEEIHCVVKTRYRQQDIPCTVTPINEDKIKVRFANPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 349 FYQGEI----CLGGGVIE 362


>gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
           pseudofirmus OF4]
 gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           pseudofirmus OF4]
          Length = 367

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 203/380 (53%), Gaps = 23/380 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D +VVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MKKRPEDTKVVVGMSGGVDSSVTALVLKEQGYDVIGIFMKNWDD---TDESGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L+  
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       + R +D  +DQ+YFL A +QQQL    FP+G
Sbjct: 118 MALGADYVATGHYARVEEVDGE-----FQLLRGVDSNKDQTYFLNALSQQQLSKTMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K+ VR+ A    L  A K DS  ICF+ +  + + +       A  G++  ++G++ 
Sbjct: 173 HIPKKEVREKALAADLATAKKKDSTGICFIGERNFKEFLSGFLP--AQPGEMQTVDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G+H+G++ YT+GQR+GLG+   GEP FV+  D   + +IVG     + L    +    +N
Sbjct: 231 GQHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGFHNQGLYSEGLEAVHLN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W+            F+C  K R  QD   V V   +D G  V F++ E  +  GQA VFY
Sbjct: 291 WIS----PTKPTSEFRCTAKFRYRQDDQGVTVIPQEDGGALVKFDEPERAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKR 388
             D      LGGG I    +
Sbjct: 347 EGDV----CLGGGTIDRVIK 362


>gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria marthii FSL S4-120]
 gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria marthii FSL S4-120]
          Length = 371

 Score =  507 bits (1307), Expect = e-142,   Method: Composition-based stats.
 Identities = 135/383 (35%), Positives = 199/383 (51%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  ADK DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 GMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    ++  
Sbjct: 347 DGDI----CLGGGTIDTVWKNGT 365


>gi|319406809|emb|CBI80442.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella sp. 1-1C]
          Length = 409

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL  +PK+ RVVVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGHPKNSRVVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+   +LGAD LATGHYIRSR++        R + R +D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLTTAYELGADALATGHYIRSRVH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++    A  G IVH+
Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD  ++ VIVGPRE LE  +++LR++
Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++  +DG +  VK+RS++ P    +       +VD  +SE GVA GQACV Y
Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S+EAR+LGGG I+ ++R+   E+ L  V+
Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKRVL 389


>gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria innocua FSL S4-378]
          Length = 371

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 197/383 (51%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  GD+  L+G++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      +SL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +          F C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNS----EKPKTFVCTAKFRYRQTDTKVTVNLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    +  A
Sbjct: 347 DGDI----CLGGGTIDTVWKKGA 365


>gi|260597502|ref|YP_003210073.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter turicensis z3032]
 gi|260216679|emb|CBA30030.1| tRNA-specific 2-thiouridylase mnmA [Cronobacter turicensis z3032]
          Length = 369

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +           C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGED---YCTAASDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+     Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+ L  A K DS  ICF+ + K+ + + R     A  G IV ++G ++G 
Sbjct: 175 EKPEVRRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDVIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + V   F C VK R  Q  +P  V+  +DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTAPFTCTVKTRYRQADIPCTVRPLDDDRIEVLFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYLGEV----CLGGGIIE 362


>gi|296446642|ref|ZP_06888583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylosinus trichosporium OB3b]
 gi|296255870|gb|EFH02956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylosinus trichosporium OB3b]
          Length = 411

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/403 (54%), Positives = 276/403 (68%), Gaps = 12/403 (2%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           V + T LNSL L K  +D RVVVAMSGGVDSSVVAALL   GYDV+GVTLQLY+  +A  
Sbjct: 8   VPDETELNSLGLPKPAQDTRVVVAMSGGVDSSVVAALLAEQGYDVVGVTLQLYDHGEAVH 67

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           RKGSCCAGQD++DARRV   + + HYV D+E RFR  VI  FA SYA+GETP+PCV CN+
Sbjct: 68  RKGSCCAGQDIHDARRVAARLGIPHYVLDFETRFRETVIDTFAQSYASGETPVPCVACNQ 127

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            VKF DL    + LGAD LATGHYI SR      G+  R + R MD  RDQSYFLFATT+
Sbjct: 128 FVKFVDLFETAKDLGADALATGHYIASRP-----GRGGRGLYRAMDAARDQSYFLFATTR 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            QL  LRFPLG+  K  VR+LAR   LD+A+K DSQDICFV  G Y D+V+R++ G A+ 
Sbjct: 183 PQLDMLRFPLGEYAKPDVRELARRFDLDVAEKPDSQDICFVPSGHYSDIVERLSPGAAVP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSRVIVGPRE 296
           G+IVH++G++LGRH G+I+YTIGQRRGLG+         +PL+VV LD   +RVIVGPRE
Sbjct: 243 GEIVHVDGRVLGRHAGVIHYTIGQRRGLGLGAAVAGRASDPLYVVRLDAARARVIVGPRE 302

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKS 355
           +LE   + LR++NW+G+G   D    G +   ++RS++ P P   +     G  V FE  
Sbjct: 303 ALETRSVRLRDVNWIGEGELADLPEGGLEIEARVRSTRPPTPARLLPLAGGGAQVLFETG 362

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           E GV+ GQACVFY  D   ARVLGGG I+ ++ +    E +L+
Sbjct: 363 EFGVSPGQACVFYDRDGARARVLGGGFIAAAEHAAEPTEPILA 405


>gi|242242895|ref|ZP_04797340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis W23144]
 gi|242233670|gb|EES35982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis W23144]
          Length = 372

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 208/379 (54%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++EE++ + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +          M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDVE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E  L  A K DS  ICF+ +  + + + +     A  G+++ LNG+ +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  + N + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNILYVEQGFHHDALYSDYLIASDFSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +  +  GF+C  K R  Q    V+VQR N++ + V F +    +  GQA VFY  +
Sbjct: 293 PSEID--LEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFYNQE 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVYKNE 365


>gi|319403803|emb|CBI77387.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 409

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/392 (58%), Positives = 295/392 (75%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL  +PK+ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGHPKNSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+   +LGAD LATGHYIRSR +        R + R +D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLTTAYELGADALATGHYIRSRAH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++    A  G IVH+
Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD  ++ VIVGPRE LE  +++LR++
Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++  +DG +  VK+RS++ P    +       +VD  +SE GVA GQACV Y
Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S+EAR+LGGG I+ ++R+   E+ L  V+
Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKKVL 389


>gi|152976810|ref|YP_001376327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189036217|sp|A7GT74|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 371

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 204/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL    Q+QL    FPLG
Sbjct: 118 MALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLGQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P FVV  +   + + V      E L    +    +N
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFVVGKNLKENILYVDQGFHNELLYGDEVIATNVN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ D   E      FKC  K R  Q+   V VQ  +++ + +  ++    +  GQA VFY
Sbjct: 291 WVSDRAKE----KEFKCTAKFRYRQEDNGVTVQIVDENTIRILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 347 DGD----ECLGGATIDEVYRSGEQLDYL 370


>gi|90419040|ref|ZP_01226951.1| tRNA methyl transferase
           ((5-methylaminomethyl-2-thiouridylate)-
           methyltransferase) [Aurantimonas manganoxydans SI85-9A1]
 gi|90337120|gb|EAS50825.1| tRNA methyl transferase
           ((5-methylaminomethyl-2-thiouridylate)-
           methyltransferase) [Aurantimonas manganoxydans SI85-9A1]
          Length = 425

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 216/395 (54%), Positives = 278/395 (70%), Gaps = 5/395 (1%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            + E    NSLDL K P D RVVVAMSGGVDSSVVAA+LK  GYDV+G+TLQLY++ + +
Sbjct: 30  TLPEWPMSNSLDLPKPPADTRVVVAMSGGVDSSVVAAILKEQGYDVVGITLQLYDAGEGA 89

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           +R GSCCAGQD++DARRV +T+ + HYV DYE+RFR AVI PFA+SY AGETP+PCV CN
Sbjct: 90  RRAGSCCAGQDIHDARRVAETLGIHHYVLDYEDRFRKAVINPFAASYLAGETPIPCVACN 149

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +TVKF DLL+  + LGAD LATGHYI SR          R + RP DL+RDQSYFL+ TT
Sbjct: 150 QTVKFRDLLATAQDLGADALATGHYIESR-----QNGAHRSLYRPADLDRDQSYFLYGTT 204

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG + K   R+LA   GL +A K DSQDICFV +G+Y DV++++    + 
Sbjct: 205 QEQLDFLRFPLGGLTKPQTRELAERHGLVVAAKPDSQDICFVAKGRYSDVIRKLRPEASE 264

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
            GDIVHL+G+ LGRH GI++YTIGQRRGLG+A  +PL+VV LD  +++V+VGPRE+L   
Sbjct: 265 PGDIVHLDGRHLGRHAGIVHYTIGQRRGLGIAAADPLYVVALDPATAQVVVGPREALATR 324

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
           R+ LR++NWLG     D      + FV++RS++ P P  +Q  +    V+    E GVA 
Sbjct: 325 RLTLRDVNWLGRTDPADMAAADEEIFVRVRSTRPPAPARIQVENGVWTVELASGEDGVAP 384

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           GQACVFY  +   A VLGGG+IS + R    + + 
Sbjct: 385 GQACVFYRGEGVGAEVLGGGVISVTDRPQRAQRAA 419


>gi|329724654|gb|EGG61160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU144]
          Length = 372

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/379 (36%), Positives = 210/379 (55%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++EE++ + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +  DDG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIRRH--DDG--HVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E  L  A K DS  ICF+ +  + + + +     A  G+++ LNG+ +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  + N + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +  +  GF+C  K R  Q    V VQR N++ + V F +    +  GQA VFY  +
Sbjct: 293 PSEID--LEKGFECTAKFRYRQKDTKVNVQRENENSIRVTFAEPVRAITPGQAVVFYNQE 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVYKNE 365


>gi|307300497|ref|ZP_07580277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti BL225C]
 gi|307318362|ref|ZP_07597797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306896044|gb|EFN26795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306904663|gb|EFN35247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti BL225C]
          Length = 398

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/380 (61%), Positives = 287/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         +R + RP D ERDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RVIVGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E A   GF+CF K+RS++ P P  ++ + +G+YV+  + E GVA GQAC  Y
Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGTGEDARVYGGGFIRRSER 380


>gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus downei F0415]
 gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus downei F0415]
          Length = 374

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D 
Sbjct: 1   MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAKYRAGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG
Sbjct: 118 MSLGADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A E GL  A K DS  ICF+ +  + + +       A  G ++ L+G+ +
Sbjct: 174 HLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMLTLDGKDM 231

Query: 254 GRHNGIINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H G++ YTI         G       P FVV  D + + + VG     ++L    +  
Sbjct: 232 GQHAGLMYYTIGQRGGLGIGGQQGGGNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLKA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             I++  D   E       +C  K R  Q    V V    D   V F++ +  +  GQA 
Sbjct: 292 STIHFTRDTPEE----FTMECTAKFRYRQPDSKVTVHVKGDQAEVVFDQPQRAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY  D      LGGGII  + +++ V + +
Sbjct: 348 VFYDGD----ECLGGGIIDNAYKNEVVCQYI 374


>gi|121602707|ref|YP_989294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella bacilliformis KC583]
 gi|166234845|sp|A1UTJ1|MNMA_BARBK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120614884|gb|ABM45485.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella bacilliformis KC583]
          Length = 391

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/392 (59%), Positives = 290/392 (73%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P++ RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGPPENSRVVVAMSGGVDSSVVAGLLKREGYDVVGITLQLYDHGAATHRAGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + +YV DYE RFR AVI PFA SYA GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLRIPYYVLDYESRFREAVIDPFAESYARGETPIPCVACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGAD LATGHYIRS  Y        R + RP+D ERDQSYFLFATTQ+Q+  L
Sbjct: 123 LLVTARELGADALATGHYIRSVSY-----GTHRALFRPLDSERDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K  VR++A+EMGL +ADK DSQDICFV QGKY DV+ ++    +  GDIVH+
Sbjct: 178 RFPLGNLPKARVREIAKEMGLTVADKHDSQDICFVPQGKYSDVIAKLRPEASNPGDIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NGQILG+H+GIINYT+GQRRG+GVA GE L+V++LD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 NGQILGQHSGIINYTVGQRRGIGVATGEALYVIFLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E+   D      KIRS++ P P  +   +    VD  + E  VA GQACVFY
Sbjct: 298 NWLGDERLENFPSDCIDVAAKIRSTRPPRPARLYYKEGIFSVDLLEGESSVAPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
               + ARVLGGG I+ S+RS   EE L  V+
Sbjct: 358 NESGDGARVLGGGFITHSERSTDAEERLQRVL 389


>gi|15966466|ref|NP_386819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti 1021]
 gi|24638324|sp|Q92MB5|MNMA_RHIME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15075737|emb|CAC47292.1| Putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Sinorhizobium meliloti 1021]
          Length = 398

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/380 (61%), Positives = 287/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         +R + RP D ERDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RVIVGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDSRSRRVIVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E A   GF+CF K+RS++ P P  ++ + +G+YV+  + E GVA GQAC  Y
Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGTGEDARVYGGGFIRRSER 380


>gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e]
 gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|224500677|ref|ZP_03669026.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes Finland
           1988]
 gi|224501548|ref|ZP_03669855.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           R2-561]
 gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N3-165]
 gi|254898322|ref|ZP_05258246.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J0161]
 gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes J2818]
 gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes F6900]
 gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
 gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
 gi|24638317|sp|Q8Y714|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e]
 gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N3-165]
 gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes F6900]
 gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
 gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
 gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes J2818]
          Length = 371

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  ADK DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    ++    + +
Sbjct: 347 DGDV----CLGGGTIDTVWKNGQKLDYV 370


>gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262]
 gi|24638323|sp|Q92BK1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262]
          Length = 371

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 197/383 (51%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A + GL  A+K DS  ICF+ +  +   +       A  GD+  LNG++L
Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D  ++ + V      +SL    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +          F C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNS----EKPKTFVCTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    +  A
Sbjct: 347 DGDI----CLGGGTIDTVWKKGA 365


>gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
 gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
          Length = 371

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 203/383 (53%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MKKDPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     G+       M R +D  +DQ+YFL   TQ QL  + FP+G
Sbjct: 118 MSLGADYLATGHYARVEFRDGE-----YKMLRGLDDNKDQTYFLNQLTQDQLEKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR+LA++ GL  A K DS  ICF+ +  + + +       A  G++  ++G+I+
Sbjct: 173 DIEKSKVRELAKDAGLATAAKKDSTGICFIGERNFKEFLGNYLP--AQPGNMETMDGKIV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP F +  D   + + VG     E L    I     +
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGAGEPWFAIGKDLKRNVLYVGQGFHNEMLYSDSIIAVNAS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+            F+C  K R  Q    V VQ   DG V V F++    V  GQA VFY
Sbjct: 291 WVT----HSEQPQEFECTAKFRYRQADSRVKVQILGDGKVQVIFDEPIRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    +   
Sbjct: 347 NGD----ECLGGGTIDKIFKDGK 365


>gi|27468222|ref|NP_764859.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867112|ref|YP_188761.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis
           RP62A]
 gi|282875953|ref|ZP_06284820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis SK135]
 gi|293366421|ref|ZP_06613099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30173406|sp|Q8CSA5|MNMA_STAES RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71153357|sp|Q5HNS9|MNMA_STAEQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27315768|gb|AAO04903.1|AE016748_137 (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637770|gb|AAW54558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis RP62A]
 gi|281294978|gb|EFA87505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis SK135]
 gi|291319455|gb|EFE59823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735247|gb|EGG71539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU045]
 gi|329737370|gb|EGG73624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU028]
          Length = 372

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/379 (36%), Positives = 210/379 (55%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++EE++ + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +  DDG     M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIRRH--DDG--HVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E  L  A K DS  ICF+ +  + + +       A  G+++ LNG+ +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSHYLP--AQSGEMLTLNGKKMGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  + N + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +  +  GF+C  K R  Q    V+VQR N++ + V F +    +  GQA VFY  +
Sbjct: 293 PSEID--LEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFYNQE 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVYKNE 365


>gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 367

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 215/381 (56%), Gaps = 21/381 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++   +++RVVV MSGGVDSSV A LLK++GY VIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNTEKQNIRVVVGMSGGVDSSVAAYLLKQEGYQVIGIFMKNWDD---TDEFGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ +++ +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIRVCNQLDIPYYAVNFEKEYWDKVFTYFLNEYRAGRTPNPDVMCNKEIKFKAFLDHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R R    D+G     + R +D  +DQ+YFL A ++ QL  + FP+G
Sbjct: 119 MSLGADYVATGHYARVRH--SDNG---VELLRGIDENKDQTYFLNALSEDQLKHVLFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  + + + +     A  G++  L+G++ 
Sbjct: 174 EIEKPRVREIAKEAHLATATKKDSTGICFIGERNFKEFLSQYLP--AQRGEMQTLDGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G H+G++ YT+GQR+GLG+   GEP FV+  D + + ++VG      +L    +   ++N
Sbjct: 232 GYHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLDKNILLVGQGYHHPALYSSGLIAEDVN 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   L +      F C  K R  Q    V V   +DG V V F++ E  +  GQ+ VFY
Sbjct: 292 WINQHLIKGK--KEFHCTAKFRYRQKDQGVTVSIMNDGQVKVIFDEQERAITPGQSVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             +      LGGG+I    +S
Sbjct: 350 DGEV----CLGGGVIDKVIKS 366


>gi|293364413|ref|ZP_06611139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
 gi|291317259|gb|EFE57686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
          Length = 415

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYIATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 330

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 331 EASQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 415


>gi|257892743|ref|ZP_05672396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,408]
 gi|257829122|gb|EEV55729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,408]
          Length = 373

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + N V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L    +   EI+
Sbjct: 234 AGLMYYTIGQRQGLGIGGGGNSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           +  +    + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY
Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +   V + +
Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373


>gi|169829330|ref|YP_001699488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus sphaericus C3-41]
 gi|205816875|sp|B1HUL3|MNMA_LYSSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168993818|gb|ACA41358.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus sphaericus C3-41]
          Length = 374

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 206/381 (54%), Gaps = 22/381 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            ++P  +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  
Sbjct: 4   TRDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYD 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D  +VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L    
Sbjct: 61  DVIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAM 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD LATGHY R    +   G     M R +D  +DQ+YFL   +Q+QL  + FP+GD
Sbjct: 121 SLGADYLATGHYAR----IDRSGDGEVKMLRGVDNNKDQTYFLNQLSQEQLAHVMFPIGD 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K+ VR +A E GL  A K DS  ICF+ +  + + + +     A  G++  ++G ++G
Sbjct: 177 IEKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQFLP--AQPGNMETMDGVVMG 234

Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +H+G++ YT+GQR GLG+   GEP FV+  D   + ++VG     E L    +   ++N+
Sbjct: 235 KHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVGQGFDNEHLYSTSLSAVKMNY 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                    +   F C  K R  Q   PV V+   DG  ++ F +    +  GQA V Y 
Sbjct: 295 TS----TKKLPGKFSCTAKFRYRQTDTPVEVELLADGRTHITFAEPVRAITPGQAVVLYD 350

Query: 370 SDSNEARVLGGGIISGSKRSD 390
            +      +GGG I    +S+
Sbjct: 351 GE----ECIGGGTIDEVFKSN 367


>gi|322391188|ref|ZP_08064660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus peroris ATCC 700780]
 gi|321145941|gb|EFX41330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus peroris ATCC 700780]
          Length = 453

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 79  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 134

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 135 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 194

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 195 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 250

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR +A E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 251 LGHLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGR 308

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     E+L    +
Sbjct: 309 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHEALMSTSL 368

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 369 EASQVHFTRDMPEE----FTLECIAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 424

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 425 AVVFYDGE----ECLGGGLIDNAYRDGKVCQYI 453


>gi|257897740|ref|ZP_05677393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com15]
 gi|257835652|gb|EEV60726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com15]
          Length = 373

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A +G++V L+G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEIKGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L    +   EI+
Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           +  +    + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY
Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +   V + +
Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373


>gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 213/383 (55%), Gaps = 24/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++ K+++VVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    S   G C A +D 
Sbjct: 1   MIESNKNIKVVVGMSGGVDSSVSALLLKEQGYDVVGIFMKNWDEEDDS---GYCTAAEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVCD I + +Y  ++ + + + V   F   Y +G TP P V CN+ +KF   L  +
Sbjct: 58  EDVVRVCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFS 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++GAD +ATGHY R     G     +  M + +D  +DQ+YFL    Q+QL    FP+G
Sbjct: 118 LKIGADYIATGHYARIEYSNG-----KYRMLKGVDKNKDQTYFLCELGQKQLSKTIFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K  VR++AR+ GL  ADK DS  ICF+ + K+ + + +     A  G+I  L+G++L
Sbjct: 173 HLNKFEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVL 230

Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           G+H+G++ YT+GQRR     G+  GEP FVV  D  ++ + V       +L  + ++ ++
Sbjct: 231 GKHDGLMFYTLGQRRGLGIGGIGTGEPWFVVDKDVENNILYVAQGEKNPALYSYALFTKD 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NW+ + +      D F+C  K R  Q    V V   DDG +V F+K +  V  GQ  VF
Sbjct: 291 VNWIDNSI----EADTFRCKAKFRYRQPDQDVTVYAKDDGYFVVFDKPQRAVTPGQFVVF 346

Query: 368 YTSDSNEARVLGGGIISGSKRSD 390
           Y  +      LGGG+I    + +
Sbjct: 347 YDGE----YCLGGGVIDSIIKDE 365


>gi|306826063|ref|ZP_07459399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431779|gb|EFM34759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 415

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 199/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  +   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 331 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R+  V + +
Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRNGKVCQYI 415


>gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria grayi DSM 20601]
 gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria grayi DSM 20601]
          Length = 370

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 204/381 (53%), Gaps = 23/381 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+  ++RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  D
Sbjct: 2   KDNSNIRVVVGMSGGVDSSVTAYLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV + I + +Y  ++E+++ + V   F + Y  G TP P V CN+ +KF   L     
Sbjct: 59  VIRVANQIGIPYYAVNFEKQYWDKVFTYFLAEYKLGRTPNPDVMCNKEIKFKAFLEHAES 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R+ +  G+       + R +D  +DQ+YFL   +Q+QL  + FPLG M
Sbjct: 119 LGADYVATGHYARTEIVDGE-----VQLLRGVDNNKDQTYFLNQLSQEQLSKVMFPLGGM 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VRD+A++ GL  A+K DS  ICF+ +  +   +       A  G++  L G+ +G+
Sbjct: 174 EKSEVRDIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLTGKRMGK 231

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311
           H+G++ YTIGQR GLG+   GEP FV   D  ++ + V      +SL    +   ++++ 
Sbjct: 232 HDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLENNVLFVEQGFHHDSLYSDMLIATDVSFT 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            +   E      F C  K R  Q    V V   ++G   V F++    +  GQA VFY  
Sbjct: 292 SNRPKE----MVFHCTAKFRYRQVDSGVTVYLTENGTAKVVFDEPVRAITPGQAVVFYDG 347

Query: 371 DSNEARVLGGGIISGSKRSDA 391
           D      LGG  I    +++ 
Sbjct: 348 DI----CLGGATIDTVYKNEK 364


>gi|227823283|ref|YP_002827255.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium fredii NGR234]
 gi|254811457|sp|C3MI00|MNMA_RHISN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|227342284|gb|ACP26502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium fredii NGR234]
          Length = 398

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/380 (61%), Positives = 287/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR       + +R + RP D ERDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYQGQRALYRPTDAERDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGNLSKPETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALGGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RVIVGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGTHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   + A   GF CF K+RS++ P P  ++ + DG+YV+    E GVA GQAC  Y
Sbjct: 301 NWLGDEEIDAAASRGFACFAKVRSTRQPAPAEMKCDADGIYVELVDGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGTGEDARVYGGGFIRKSER 380


>gi|227552294|ref|ZP_03982343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX1330]
 gi|257895129|ref|ZP_05674782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com12]
 gi|293377883|ref|ZP_06624064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium PC4.1]
 gi|227178565|gb|EEI59537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX1330]
 gi|257831694|gb|EEV58115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com12]
 gi|292643430|gb|EFF61559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium PC4.1]
          Length = 373

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L    +   EI+
Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           +  +    + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY
Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +   V + +
Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373


>gi|156934382|ref|YP_001438298.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166234851|sp|A7MFV2|MNMA_ENTS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|156532636|gb|ABU77462.1| hypothetical protein ESA_02213 [Cronobacter sakazakii ATCC BAA-894]
          Length = 369

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +           C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGED---YCTAASDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+     Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+ L  A K DS  ICF+ + K+ + + R     A  G IV ++G  +G 
Sbjct: 175 EKPEVRRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDTIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + V   F C VK R  Q  +P  V+  +DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTAPFTCSVKTRYRQADIPCTVRPLDDDRIEVVFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYLGEV----CLGGGIIE 362


>gi|315612257|ref|ZP_07887171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
 gi|315315650|gb|EFU63688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
          Length = 415

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  +   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 331 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 415


>gi|77459818|ref|YP_349325.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf0-1]
 gi|123604062|sp|Q3KA70|MNMA_PSEPF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77383821|gb|ABA75334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens Pf0-1]
          Length = 374

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 197/383 (51%), Gaps = 26/383 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             +    RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  D+ 
Sbjct: 6   PSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I    G+++G
Sbjct: 178 LEKPEVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        EP +V+  D +++ +IVG       L    +   
Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLRKDLDTNELIVGQGNNHPWLFSSALLAS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             +   K+R  Q      +++ D G    F++ +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSQP----LRLTAKVRYRQSDQACTLEKTDTGYRAVFDEPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  +      LGGG+I  ++  
Sbjct: 352 FYDGEI----CLGGGVIEVAEPW 370


>gi|69244797|ref|ZP_00603021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium DO]
 gi|257879151|ref|ZP_05658804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,230,933]
 gi|257882042|ref|ZP_05661695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,502]
 gi|257883775|ref|ZP_05663428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,501]
 gi|257889981|ref|ZP_05669634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,410]
 gi|258615538|ref|ZP_05713308.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecium DO]
 gi|260560202|ref|ZP_05832379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium C68]
 gi|293553765|ref|ZP_06674382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1039]
 gi|293563497|ref|ZP_06677945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1162]
 gi|293569057|ref|ZP_06680369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1071]
 gi|293571269|ref|ZP_06682303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E980]
 gi|294622809|ref|ZP_06701763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium U0317]
 gi|314947767|ref|ZP_07851174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0082]
 gi|68196151|gb|EAN10581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium DO]
 gi|257813379|gb|EEV42137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,230,933]
 gi|257817700|gb|EEV45028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,502]
 gi|257819613|gb|EEV46761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,501]
 gi|257826341|gb|EEV52967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,410]
 gi|260073769|gb|EEW62094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium C68]
 gi|291588238|gb|EFF20074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1071]
 gi|291597767|gb|EFF28905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium U0317]
 gi|291602058|gb|EFF32293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1039]
 gi|291604499|gb|EFF33985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1162]
 gi|291608676|gb|EFF37964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E980]
 gi|313645747|gb|EFS10327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0082]
          Length = 373

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L    +   EI+
Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           +  +    + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY
Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +   V + +
Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373


>gi|261208073|ref|ZP_05922748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TC 6]
 gi|289565497|ref|ZP_06445945.1| tRNA methyl transferase [Enterococcus faecium D344SRF]
 gi|294615054|ref|ZP_06694941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1636]
 gi|294617680|ref|ZP_06697306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1679]
 gi|314938375|ref|ZP_07845666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a04]
 gi|314942298|ref|ZP_07849146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133C]
 gi|314951434|ref|ZP_07854484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133A]
 gi|314993154|ref|ZP_07858539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133B]
 gi|314996038|ref|ZP_07861116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a01]
 gi|260077657|gb|EEW65373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TC 6]
 gi|289162695|gb|EFD10547.1| tRNA methyl transferase [Enterococcus faecium D344SRF]
 gi|291592089|gb|EFF23711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1636]
 gi|291596054|gb|EFF27321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1679]
 gi|313589792|gb|EFR68637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a01]
 gi|313592331|gb|EFR71176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133B]
 gi|313596391|gb|EFR75236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133A]
 gi|313598915|gb|EFR77760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133C]
 gi|313642273|gb|EFS06853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a04]
          Length = 373

 Score =  505 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A +GD+V L+G++ G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGDMVTLDGEVKGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L    +   EI+
Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           +  +    + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY
Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +   V + +
Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373


>gi|85713551|ref|ZP_01044541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter sp. Nb-311A]
 gi|85699455|gb|EAQ37322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter sp. Nb-311A]
          Length = 433

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 216/397 (54%), Positives = 281/397 (70%), Gaps = 4/397 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
             + LNSLDL+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RK
Sbjct: 31  TGSMLNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRK 90

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V + + V HYV DYE RFR  VI  FA SYA+GETP+PC++CNR V
Sbjct: 91  GACCAGQDIHDARNVAERLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRLV 150

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL+  R+LGA  LATGHY+ SR   G      R +    D +RDQSYFLFATT++Q
Sbjct: 151 KFRDLLATARELGAAALATGHYVASRRSPG----GSRTLLCAADADRDQSYFLFATTREQ 206

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR  GL +ADK DSQDICFV  G Y D++ ++     L GD
Sbjct: 207 LDFLRFPLGDMTKAQTRELARRFGLPVADKHDSQDICFVPTGHYTDIISQLKPNAMLSGD 266

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV L+G+++G H GI+N+T+GQRRGLG+A G PL+V+ LD  + RV+VGPRE+L++HRI 
Sbjct: 267 IVDLDGRVIGHHEGIVNFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIV 326

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR++NW+GDG  + A+  G + FV++RS++ P P +++  D G  V+    E GV+ GQA
Sbjct: 327 LRDVNWIGDGALDLAIGAGLELFVRVRSTRKPQPAWLRVVDGGYEVELVAGEEGVSPGQA 386

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIG 401
           CVFY     +ARVLGGG I+ +    A E +  +   
Sbjct: 387 CVFYDGPEGQARVLGGGFIARAMAQRANEGAARNSTP 423


>gi|322375113|ref|ZP_08049627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C300]
 gi|321280613|gb|EFX57652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C300]
          Length = 415

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 41  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 97  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 331 EASQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 415


>gi|150397798|ref|YP_001328265.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium medicae WSM419]
 gi|205828972|sp|A6UCQ0|MNMA_SINMW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150029313|gb|ABR61430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium medicae WSM419]
          Length = 398

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/380 (61%), Positives = 286/380 (75%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+TI + HYV DYE RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR         +R + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPSPMPRYPGQRALYRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D+V ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD  S RV+VGP+E+LE  R+YLR++
Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVVVGPKEALETRRVYLRDV 300

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   E A   GF+CF K+RS++ P P  +  + +G+YV+  + E GVA GQAC  Y
Sbjct: 301 NWLGDEELEAAARSGFECFAKVRSTRRPAPAVLSCDAEGLYVELVEGEAGVAPGQACALY 360

Query: 369 TSDSNEARVLGGGIISGSKR 388
           +    +ARV GGG I  S+R
Sbjct: 361 SGIGEDARVYGGGFIRRSER 380


>gi|73662449|ref|YP_301230.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123642746|sp|Q49Y59|MNMA_STAS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72494964|dbj|BAE18285.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 370

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 22/377 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDTRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWD---NTDENGYCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +          M R +D  +DQ+YFL   +Q QL  + FP+GD++
Sbjct: 119 GADYVATGHYARVRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E  L  A K DS  ICF+ +  + + + +     A  G++  L G+ +G H
Sbjct: 175 KKEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMRTLKGEKIGTH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            G++ YTIGQR GLG+   G+P FVV  + + + + V      ++L    +   +I+++ 
Sbjct: 233 AGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           D   E    +GF+C  K R  Q    VFV+  N++ + V F +    +  GQ+ V Y  D
Sbjct: 293 DVDLE----NGFECTAKFRYRQKDTKVFVKNENENAIRVIFNEPVRAITPGQSVVLYDGD 348

Query: 372 SNEARVLGGGIISGSKR 388
                 LGG  I    +
Sbjct: 349 V----CLGGATIDDVYK 361


>gi|116494783|ref|YP_806517.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus casei ATCC 334]
 gi|301066347|ref|YP_003788370.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Lactobacillus casei str. Zhang]
 gi|122263799|sp|Q039P7|MNMA_LACC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116104933|gb|ABJ70075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus casei ATCC 334]
 gi|300438754|gb|ADK18520.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus casei
           str. Zhang]
          Length = 377

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 7   DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 64  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D      M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 124 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H
Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 237

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 238 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W        A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 298 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 353

Query: 369 TSDSNEARVLGGGIISGSK 387
             D      LGGG I  + 
Sbjct: 354 DGD----ECLGGGTIDAAY 368


>gi|257886541|ref|ZP_05666194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,141,733]
 gi|257822595|gb|EEV49527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,141,733]
          Length = 373

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 176 KSEVRAIAERAGLVTAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L    +   EI+
Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           +  +    + +   FKC  K R  Q  VPV V+  DD    V F++    +  GQA VFY
Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +   V + +
Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373


>gi|314936263|ref|ZP_07843610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313654882|gb|EFS18627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 370

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 202/378 (53%), Gaps = 22/378 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG+ +G H
Sbjct: 175 KKDVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDASFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               E    +GF+C  K R  Q    VFVQ+ D+  + V F++    +  GQA VFY  +
Sbjct: 293 PVDLE----NGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQAVVFYNGE 348

Query: 372 SNEARVLGGGIISGSKRS 389
                 LGG  I    ++
Sbjct: 349 V----CLGGATIDDVYKT 362


>gi|258621706|ref|ZP_05716737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM573]
 gi|258626348|ref|ZP_05721195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM603]
 gi|262171838|ref|ZP_06039516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus MB-451]
 gi|258581400|gb|EEW06302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM603]
 gi|258585937|gb|EEW10655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM573]
 gi|261892914|gb|EEY38900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus MB-451]
          Length = 371

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDNNKDQSYFLYTLSHEQVARSLFPVGDL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 299 LHWVD----RTPITEPLRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEI----CLGGGIIE 368


>gi|224476719|ref|YP_002634325.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254811461|sp|B9DNH6|MNMA_STACT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222421326|emb|CAL28140.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 370

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 136/377 (36%), Positives = 196/377 (51%), Gaps = 22/377 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + +D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNQDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + R     D      M R +D  +DQ+YFL   T +QL  + FPLG M+
Sbjct: 119 GADYVATGHYAQVRR----DADGNVEMLRGVDNNKDQTYFLNQLTHEQLSKVMFPLGGME 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E  L  A K DS  ICF+ +  + + +       A  GD+  LNG+ +G H
Sbjct: 175 KSEVRRIAAEQDLATAKKKDSTGICFIGERNFKEFLSNYLP--AQSGDMRTLNGKKMGTH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   +++ + 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVLYVEQGFHHDALYSDYLIASDVSLVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D      + DG +C  K R  Q    V V R D+  + VDF++    +  GQA V Y  D
Sbjct: 293 DID----LTDGLECTAKFRYRQKDTKVTVTRIDENQIRVDFDQPVRAITPGQAVVLYDGD 348

Query: 372 SNEARVLGGGIISGSKR 388
                 LGG  I    +
Sbjct: 349 V----CLGGATIDDVYK 361


>gi|49475921|ref|YP_033962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella henselae str. Houston-1]
 gi|81647713|sp|Q6G2J9|MNMA_BARHE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49238729|emb|CAF27985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella henselae str. Houston-1]
          Length = 409

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/392 (57%), Positives = 292/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P++ R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DAR V +T+ + HYV DYEERFR AVI PFA+SYA GETP+PC+ CN+TVKF+D
Sbjct: 63  AGQDIEDARCVAETLGIPHYVLDYEERFREAVIDPFAASYAHGETPVPCIACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+L AD LATGHYIRSR +        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELDADALATGHYIRSRSH-----GAHRALFRPLDSDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +A+K DSQDICFV QGKY D++ ++       G IVH+
Sbjct: 178 RFPLGDLPKARVREMATEMGFVVANKHDSQDICFVPQGKYSDIITKLRPEAVNPGVIVHV 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQ+LG+H+GI++YT+GQRRG+GVA GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGQVLGKHSGIVHYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++   DG +  VK+RS++ P    +   +    VDF + E  VA GQACVFY
Sbjct: 298 NWLGDERLDNFPPDGIEMAVKVRSTRPPHLARLHYQEGVFSVDFLECENSVAPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S+ ARVLGGG ++ S+R+   E  L  V+
Sbjct: 358 DGNSDGARVLGGGFVTHSERAAETEMMLKRVL 389


>gi|239631620|ref|ZP_04674651.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526085|gb|EEQ65086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 376

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 6   DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 63  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D      M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 123 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G  +G H
Sbjct: 179 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 236

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 237 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W        A  +G     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 297 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 352

Query: 369 TSDSNEARVLGGGIISGSK 387
             D      LGGG I  + 
Sbjct: 353 DGD----ECLGGGTIDAAY 367


>gi|148253403|ref|YP_001237988.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. BTAi1]
 gi|205811320|sp|A5ED38|MNMA_BRASB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146405576|gb|ABQ34082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bradyrhizobium sp. BTAi1]
          Length = 397

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 219/390 (56%), Positives = 280/390 (71%), Gaps = 4/390 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + + HYV DYE+RFR +VI  FA+SYA+GETP+PC++CNR +KF D
Sbjct: 62  AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGA VLATGHY+ SR          R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLKTARELGASVLATGHYVASRRLAD----GSRALVCAADADRDQSYFLFATTREQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K  VR+LAR  GL++ADK DSQDICFV  G+Y D++ ++       G+IV L
Sbjct: 178 RFPLGDMTKPEVRELARRFGLEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG++LG H GI NYTIGQR+GLG+A G PL+VV LD  + RV+VGPRE+L  HRI LRE+
Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVATRRVVVGPREALRTHRITLREV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG+ + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGVLDAAVRDGLELFVRVRSTRPPQPAWLRGADGQYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
            + S  ARVLGGG I  +         L+ 
Sbjct: 358 DAASGRARVLGGGFIQSAVAESRTTAGLVR 387


>gi|228475220|ref|ZP_04059946.1| tRNA-methyltransferase [Staphylococcus hominis SK119]
 gi|228270831|gb|EEK12233.1| tRNA-methyltransferase [Staphylococcus hominis SK119]
          Length = 370

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 202/378 (53%), Gaps = 22/378 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +Q+QL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRHEDS----HVEMLRGIDNNKDQTYFLNQLSQKQLSKVMFPIGDLE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG+ +G H
Sbjct: 175 KKEVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDASFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               E    +GF+C  K R  Q    VFVQ+ D+  + V F++    +  GQA VFY  +
Sbjct: 293 PVDLE----NGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQAVVFYNGE 348

Query: 372 SNEARVLGGGIISGSKRS 389
                 LGG  I    ++
Sbjct: 349 V----CLGGATIDDVYKT 362


>gi|15672819|ref|NP_266993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|12723762|gb|AAK04935.1|AE006317_4 tRNA-methyltransferase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406382|gb|ADZ63453.1| 5-methylaminomethyl-2-thiouridylate-tRNA methyltransferase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 384

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 196/390 (50%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 12  KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 69  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 129 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 185 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 242

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG     E L    +   
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 302

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++++  +            C  K R  Q+   V +  N D V VDF++    +  GQA V
Sbjct: 303 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 358

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGG +I  + ++  V +  
Sbjct: 359 FYDGE----ECLGGAMIDVAYKAQKVMQYQ 384


>gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coahuilensis m4-4]
          Length = 371

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 142/376 (37%), Positives = 198/376 (52%), Gaps = 23/376 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKAPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVANQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY +     G+       M R  D  +DQ+YFL   +Q  L  + FP+G
Sbjct: 118 MKLGADYLATGHYAQVEERDGE-----IKMLRGKDENKDQTYFLNQLSQDVLKKVLFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K  VR++A+E GL  A K DS  ICF+ +  + + + +     A  G +  L+G++ 
Sbjct: 173 SLDKSRVREIAKEAGLATATKKDSTGICFIGERNFKEFLGQYLP--AQPGTMETLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H G++ +TIGQR GLG+   GEP F V  D   + + V      +SL    I   +I+
Sbjct: 231 GQHEGLMYHTIGQRHGLGIGGAGEPWFAVGKDLERNVLFVEQGFDHDSLYSTSILATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W  D   E      F C  K R  Q    V V+  D + V V F++    V  GQA VFY
Sbjct: 291 WTSDFPKE----QEFHCTAKFRYRQSDNSVTVKLLDNNKVEVIFDEPIRAVTPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGG I 
Sbjct: 347 DGDV----CLGGGTID 358


>gi|194429520|ref|ZP_03062041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B171]
 gi|194412394|gb|EDX28695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B171]
 gi|323163677|gb|EFZ49499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E128010]
          Length = 368

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTATADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|307944132|ref|ZP_07659473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseibium sp. TrichSKD4]
 gi|307772478|gb|EFO31698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseibium sp. TrichSKD4]
          Length = 390

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/382 (57%), Positives = 275/382 (71%), Gaps = 7/382 (1%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           NSLDL   P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+   A  R  SCCA
Sbjct: 3   NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKEEGYDVIGVTLQLYDHGAAVSRAKSCCA 62

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D++DARR  + I + HYV DYE RF+  V+  FA SY AGETP+PCV CN+TVKF+DL
Sbjct: 63  GVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   + LGADVLATGHY+RSR     DG +R  + RP+DL+RDQSYFLFATTQ+QL  +R
Sbjct: 123 LKTAKDLGADVLATGHYVRSRP----DGNKRA-LFRPVDLDRDQSYFLFATTQEQLDFIR 177

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG   K  VR LA + GL +A+K DSQDICFV  G Y +V++++    A  GDIVH++
Sbjct: 178 FPLGGRPKSEVRQLAEKFGLSVANKPDSQDICFVPNGDYTEVIRKLRPNAAEPGDIVHMD 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG+H G+I+YT+GQRRGLGVA GEPL+VV LD +  RV+VGPRE+L  + I LRE+N
Sbjct: 238 GRVLGQHEGVIHYTVGQRRGLGVATGEPLYVVRLDADEKRVVVGPREALTTNTIILREVN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           WLGD   ++        F K+RS++ P P  ++   +   V+    E GVA GQACVF+ 
Sbjct: 298 WLGDMPLDEGA--ELDLFAKVRSTRPPAPAILRHTAEKTTVELVTGEAGVAPGQACVFFD 355

Query: 370 SDSNEARVLGGGIISGSKRSDA 391
           S+   ARVLGGG I+ ++RS A
Sbjct: 356 SEDETARVLGGGWIARTERSGA 377


>gi|256822321|ref|YP_003146284.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
 gi|256795860|gb|ACV26516.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
          Length = 367

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 207/383 (54%), Gaps = 27/383 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           DK P++  V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ 
Sbjct: 3   DKAPENTHVIVGMSGGVDSSVSAYLLKKQGYQVEGLFMKNWEEDDTDE---YCSAAEDLA 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD + +     ++   + + V   F   Y AG TP P + CN+ +KF   L   +
Sbjct: 60  DAQAVCDKLGIKLRTVNFAAEYWDRVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLDYAQ 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY+R       +   +  + R +DL +DQSYFL+  + +++    FP+G 
Sbjct: 120 LLGADYIATGHYVRRG-----EADGKATLLRGLDLNKDQSYFLYGVSHEKIAKTLFPVGC 174

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL  A K DS  ICF+ + K+ D +++     A  G+I    G+++G
Sbjct: 175 IEKPEVRKIAEEQGLVTAKKKDSTGICFIGERKFTDFLQQYLP--AQPGNIETPEGEVIG 232

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +HNG++ +T+GQR+GLG+        EP F +  D   + +IVG       L  H +   
Sbjct: 233 KHNGLMYHTLGQRKGLGIGGRQDSSEEPWFTLNKDLKRNVLIVGQGHEHPLLMSHGLIAD 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365
           +++W+      +   D F+C  K R  QD VP  V+R +D  + V+F+  +  V  GQ+ 
Sbjct: 293 KLDWIA----TEPPSDEFRCTAKTRYRQDDVPCQVKRLNDTQWLVEFDDKQRAVTPGQSV 348

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  +      LGGGII   +R
Sbjct: 349 VFYQGEV----CLGGGIIKEIRR 367


>gi|327439665|dbj|BAK16030.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Solibacillus silvestris StLB046]
          Length = 372

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 202/380 (53%), Gaps = 24/380 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            ++P  +RVV+ MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  
Sbjct: 4   TRDPSQIRVVIGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDEFGVCTATEDYD 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L    
Sbjct: 61  DVIAVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAL 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD LATGHY R         +    M R +D  +DQ+YFL   T +QL  + FP+G 
Sbjct: 121 ALGADYLATGHYARVAHD-----ENGVKMLRGIDNNKDQTYFLNQLTSEQLEKVMFPIGH 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR +A E GL  A K DS  ICF+ +  + + + +     A  G++   +G++ G
Sbjct: 176 LPKPEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGNMETFDGEVKG 233

Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310
            H+G++ YT+GQR GLG+   GEP FVV  D   + + VG     ++L    +   ++++
Sbjct: 234 THDGLMYYTLGQRHGLGIGGDGEPWFVVGKDLTRNVLYVGQGFHHDALYSDALTAVKMSF 293

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
            G     +A    F C  K R  Q+  PV V   +DG  Y++F +    +  GQA V Y 
Sbjct: 294 TG-----EAKTGTFNCTAKFRYRQEDSPVTVTMREDGTAYIEFAEPVRAITPGQAVVLYD 348

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGG I G  ++
Sbjct: 349 GE----ECLGGGTIDGVFKN 364


>gi|269139398|ref|YP_003296099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda EIB202]
 gi|267985059|gb|ACY84888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda EIB202]
 gi|304559294|gb|ADM41958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda FL6-60]
          Length = 367

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 199/379 (52%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +    + +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDRLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 120 LGADYIATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G+ +G 
Sbjct: 175 EKPEVRRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D +++ ++V        L  + +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPRLFSNGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +P  V   +DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RRPLGAPLRCTVKTRYRQADIPCLVTPLSDDRIAVRFDQPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 349 FYQDEV----CLGGGIIET 363


>gi|319898474|ref|YP_004158567.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella clarridgeiae 73]
 gi|319402438|emb|CBI75979.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella clarridgeiae 73]
          Length = 409

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL  +P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGHPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPVPCVSCNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+   +LGAD LATGHYIRSR++        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATAYELGADALATGHYIRSRVH-----GAHRALFRPLDADRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K+ VR++A EMGL +A+K DSQDICFV QG+Y DV+ ++   +A  G IVH+
Sbjct: 178 RFPLGDLSKDRVREIATEMGLVVANKHDSQDICFVPQGRYSDVITKLRPEVANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD  ++RVIVGPRE LE  R++LR++
Sbjct: 238 DGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENARVIVGPREMLETRRLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++  +DG    VK+RS++ P P  +        VD  +SE G+A GQACV Y
Sbjct: 298 NWLGDERLDNFPLDGIDVAVKVRSTRPPRPARLHYKQGLFSVDLLESESGIAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             +S EAR+LGGG I+ S+ +   E+ L  V+
Sbjct: 358 NENSYEARILGGGFITRSEHAADTEKMLKQVL 389


>gi|270261459|ref|ZP_06189732.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
 gi|270044943|gb|EFA18034.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
          Length = 367

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADFIATGHYVRRQ-----DVDGKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV+++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVNVDGQTVGE 232

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHDHPRLMSTGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +P  V   DD  + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RLPLSGPLRCTVKTRYRQQDIPCTVTPLDDQRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQDEI----CLGGGIIE 362


>gi|149376379|ref|ZP_01894142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter algicola DG893]
 gi|149359393|gb|EDM47854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter algicola DG893]
          Length = 386

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 23/390 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P++ RV+V MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+
Sbjct: 1   MTKAPENTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR V +TI ++ +   +   + + V   F S Y AG TP P + CN+ VKF   L   
Sbjct: 58  ADARAVAETIGITLHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R R    DDG     + + +D  +DQSYFL A + +++    FP+G
Sbjct: 118 ITLGADYIATGHYTRQRPL--DDGSGGAELLKGLDPNKDQSYFLHAVSGERIARTLFPVG 175

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E G    DK DS  ICF+ + K+ D +K+     A  G+I   +GQ++
Sbjct: 176 ELEKPEVRRIAAEQGFITHDKKDSTGICFIGERKFRDFLKQYIP--AQPGNIETPDGQVI 233

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYL 305
           GRH G++ +TIGQR+GLG+        EP +V   D + + ++         L    +  
Sbjct: 234 GRHQGLMYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLIS 293

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             ++W+      +A    F+C  K R  Q      V    +G  V F+ ++  V  GQ+ 
Sbjct: 294 GPVDWIAG----EAPAAEFRCKAKTRYRQPDQDCTVTVLGNGFRVVFDDAQRAVTPGQSV 349

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEES 395
           VFY  +      LGGG+I  + R      +
Sbjct: 350 VFYRDEV----CLGGGVIEQTWRDGEQAPT 375


>gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. Y412MC10]
 gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. Y412MC10]
          Length = 375

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/384 (36%), Positives = 208/384 (54%), Gaps = 23/384 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + + K   + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A  
Sbjct: 5   ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D RRVC+ +++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+
Sbjct: 62  DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 121

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    + +DG+ R  + R +D  +DQ+YFL A +Q+QL    FP
Sbjct: 122 KAMDLGADYVATGHYAR---VIEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLAKAMFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           +G + K  VR LA E GL  A K DS  +CF+ +  + + + +     A  GD+V  + G
Sbjct: 177 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 234

Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYL 305
           ++ GRH+G++ YT+GQR+     G   GEP FV   D  ++   V+ G   SL    +  
Sbjct: 235 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             INW+     +    D + C  K R  Q    V +   +DG V+V F K +  +  GQA
Sbjct: 295 SGINWIAGQ--DAMPKDAYTCTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQA 352

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            VFY  D      LGGG I  + +
Sbjct: 353 VVFYQGD----ECLGGGTIETADK 372


>gi|120554680|ref|YP_959031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter aquaeolei VT8]
 gi|205816919|sp|A1U1H5|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter aquaeolei VT8]
          Length = 392

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 201/397 (50%), Gaps = 23/397 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            ++P   RV+V MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+ 
Sbjct: 7   PQSPAHTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDLA 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V D I +  +   +   + + V   F S Y+AG TP P + CN+ VKF   L    
Sbjct: 64  DAQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAV 123

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY R R    +DG  +  + + +D  +DQSYFL A + +++    FP+G+
Sbjct: 124 TLGADYIATGHYTRQRPL--NDGSGKAQLLKGLDPNKDQSYFLHAVSGERIARTLFPVGE 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E G    DK DS  ICF+ + K+ D +K+     A  G+I   +G ++G
Sbjct: 182 LEKPEVRRIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGNIETPDGTVIG 239

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYLR 306
           +H G++ +TIGQR+GLG+        EP +V   D   + +  + G     L    +   
Sbjct: 240 KHQGLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSG 299

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            ++W+      +     F+C  K R  Q      V   D GV V F+ ++  V  GQ+ V
Sbjct: 300 PVDWVAG----EPPAQKFRCKAKTRYRQPDQDCEVTVIDGGVKVVFDDAQRAVTPGQSVV 355

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           FY  +      LGGG+I  + R +    + L     E
Sbjct: 356 FYQGEV----CLGGGVIEQTWRDNEALPARLEHQASE 388


>gi|270291444|ref|ZP_06197666.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
 gi|304385157|ref|ZP_07367503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pediococcus acidilactici DSM 20284]
 gi|270280290|gb|EFA26126.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
 gi|304329351|gb|EFL96571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pediococcus acidilactici DSM 20284]
          Length = 377

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/380 (35%), Positives = 197/380 (51%), Gaps = 24/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDD---TDENGYCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L
Sbjct: 60  AKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D    + + R  D  +DQ+YFL   + +QL  + FPLG M 
Sbjct: 120 GADYVATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMV 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A+E GL + DK DS  ICF+ +  + + +       A  G ++ L+G++ G H
Sbjct: 176 KPEVRAIAKEAGLAVYDKKDSVGICFIGEKNFREFLSNYLP--AKPGKMMTLDGEVKGEH 233

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
            G++ YTIGQRRGLG+  G    EP FVV  D + + + VG       L    +   +++
Sbjct: 234 AGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFDNPHLYAASLDASDMH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367
           ++      +     F+C  K R     VPV V  +DD   V VDF++    +  GQA V 
Sbjct: 294 FVN--RLGEERGHDFRCTAKFRYRAKDVPVTVHFSDDFSKVTVDFDEPARAITPGQALVL 351

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      +GGGII  + 
Sbjct: 352 YDGE----ECIGGGIIDAAY 367


>gi|330446458|ref|ZP_08310110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490649|dbj|GAA04607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 371

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 196/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY R      +    +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPQMLRGVDNNKDQSYFLYTLSHEQIARSLFPVGEL 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K  VR +A E GL  A K DS  ICF+ + K+ + + +     A  G IV  + G+ +G
Sbjct: 178 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIG 235

Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
            H G++ +T+GQR+GL       G    +  +VV  D  ++ +IVG       L+ + + 
Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVENNLLIVGQGKDHPRLKSNGLI 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
            ++++W+        + +   C VK R  Q  +P  +   DD  + V F++ ++ V  GQ
Sbjct: 296 AKQLHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGGII 
Sbjct: 352 SAVFYNGEI----CLGGGIIE 368


>gi|254829729|ref|ZP_05234384.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 10403S]
          Length = 371

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 201/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I++ +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIDIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  ADK DS  ICF+ +  +   +       A  G++  L+G++L
Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  +   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKNLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    ++    + +
Sbjct: 347 DGDV----CLGGGTIDTVWKNGQKLDYV 370


>gi|238920209|ref|YP_002933724.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella ictaluri 93-146]
 gi|259495829|sp|C5B8B9|MNMA_EDWI9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|238869778|gb|ACR69489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Edwardsiella ictaluri 93-146]
          Length = 367

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 198/379 (52%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +    + +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDRLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 120 LGADYIATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G+ +G 
Sbjct: 175 EKPEVRRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D +++ ++V        L  + +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPRLFSNGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +P  V    D+ + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RLPLGAPLRCTVKTRYRQADIPCLVTPLADERIEVRFDQPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 349 FYQDEV----CLGGGIIET 363


>gi|15641141|ref|NP_230773.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587442|ref|ZP_01677211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 2740-80]
 gi|121726243|ref|ZP_01679533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V52]
 gi|147673628|ref|YP_001216596.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O395]
 gi|153816924|ref|ZP_01969591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae NCTC 8457]
 gi|153822021|ref|ZP_01974688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|227081301|ref|YP_002809852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae M66-2]
 gi|14195282|sp|Q9KSX8|MNMA_VIBCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828983|sp|A5F2F2|MNMA_VIBC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9655600|gb|AAF94287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548362|gb|EAX58426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 2740-80]
 gi|121631189|gb|EAX63562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V52]
 gi|126512511|gb|EAZ75105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae NCTC 8457]
 gi|126520486|gb|EAZ77709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|146315511|gb|ABQ20050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O395]
 gi|227009189|gb|ACP05401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae M66-2]
 gi|227012943|gb|ACP09153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O395]
          Length = 372

 Score =  503 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 8   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 65  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVGEL 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 300 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 356 FYQGEI----CLGGGIIE 369


>gi|322378091|ref|ZP_08052577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M334]
 gi|321280928|gb|EFX57942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M334]
          Length = 391

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 17  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 73  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 189 LGHLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  D   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 307 EASQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 362

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 391


>gi|229505277|ref|ZP_04394787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae BX 330286]
 gi|229511053|ref|ZP_04400532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|229518173|ref|ZP_04407617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC9]
 gi|229608296|ref|YP_002878944.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae MJ-1236]
 gi|254848257|ref|ZP_05237607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MO10]
 gi|255745540|ref|ZP_05419488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholera CIRS 101]
 gi|262158386|ref|ZP_06029502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae INDRE 91/1]
 gi|262170249|ref|ZP_06037936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC27]
 gi|229344888|gb|EEO09862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC9]
 gi|229351018|gb|EEO15959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|229357500|gb|EEO22417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae BX 330286]
 gi|229370951|gb|ACQ61374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MJ-1236]
 gi|254843962|gb|EET22376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MO10]
 gi|255736615|gb|EET92012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholera CIRS 101]
 gi|262021264|gb|EEY39978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC27]
 gi|262029827|gb|EEY48475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae INDRE 91/1]
          Length = 371

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 299 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEI----CLGGGIIE 368


>gi|262274515|ref|ZP_06052326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Grimontia hollisae CIP 101886]
 gi|262221078|gb|EEY72392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Grimontia hollisae CIP 101886]
          Length = 370

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSSKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLEIPLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  +  Q+    FP+GD+
Sbjct: 120 LEADYIAMGHYVRRTFPTKT--GEKAQMLRGLDSNKDQSYFLYTLSHDQVARSLFPVGDL 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + +     A  G I  ++G+ +G 
Sbjct: 178 EKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLSKYLP--AQPGIIETVDGKKIGE 235

Query: 256 HNGIINYTIGQRRGLGVAMGE-------PLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +   +       P +VV  D   + +IV        L    +  
Sbjct: 236 HQGLMYHTLGQRKGLHIGGQKGGNGNEAPWYVVDKDVERNVLIVAQGHDHPRLFSKGLIA 295

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
            +++W+        + +  KC VK R  Q  +   ++  D D + V F++ +  V  GQ+
Sbjct: 296 AQLHWVD----RKTMTEPLKCTVKTRYRQQDISCTIEPIDGDQIKVIFDEPQAAVTPGQS 351

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY+ D      LGGGII 
Sbjct: 352 AVFYSGDV----CLGGGIIE 367


>gi|146322015|ref|YP_001201726.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 98HAH33]
 gi|145692821|gb|ABP93326.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus suis 98HAH33]
 gi|292559420|gb|ADE32421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis GZ1]
          Length = 423

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 50  MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 106

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 107 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 166

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 167 MNLGADYVATGHYAQ----VTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 222

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +
Sbjct: 223 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 280

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        EP FVV  D + + + VG     ESL    +  
Sbjct: 281 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 340

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA 
Sbjct: 341 SQVHFTRDMPEE----FTLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAV 396

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGG+I  + +     + +
Sbjct: 397 VFYDG----QECLGGGMIDMAYKDGEACQYI 423


>gi|240850925|ref|YP_002972325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella grahamii as4aup]
 gi|240268048|gb|ACS51636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella grahamii as4aup]
          Length = 409

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/392 (57%), Positives = 291/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D R+VVAMSGGVDSSVVA LLK++GY+VIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKKEGYNVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR +        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +A+K DSQDICFV QGKY DV+ ++    A  G IVH+
Sbjct: 178 RFPLGDLPKARVREMAAEMGFVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   +     G +  VK+RS++ P    +   +    VD  + E GVA GQACV Y
Sbjct: 298 NWLGDESLDKFPSQGIEVAVKVRSTRPPHLARLHYKEGIFSVDLLECENGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             + +EAR+LGGG ++ S+R+   E  L  V+
Sbjct: 358 DGNGHEARILGGGFVTHSERAADTEMMLKRVL 389


>gi|163868748|ref|YP_001609965.1| tRNA-specific 2-thiouridylase MnmA [Bartonella tribocorum CIP
           105476]
 gi|205812594|sp|A9IWH0|MNMA_BART1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161018412|emb|CAK01970.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella tribocorum CIP 105476]
          Length = 407

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 293/392 (74%), Gaps = 5/392 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D R+VVAMSGGVDSSVVA LLKR+GY+VIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKREGYNVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV + + + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAEMLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR +        R + RP+D +RDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMGL +A+K DSQDICFV QGKY DV+ ++    A  G IVH+
Sbjct: 178 RFPLGDLPKARVREIAAEMGLVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGFIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++    G +  VK+RS++ P    +   +    VD  + E GVA GQACV Y
Sbjct: 298 NWLGDESLDNFPSQGIEVAVKVRSTRPPHLACLHYKEGVFSVDLLECENGVAPGQACVLY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
             + +EAR+LGGG ++ S+R+  +E  L  V+
Sbjct: 358 DGNGHEARILGGGFVTHSERAADIEVMLKRVL 389


>gi|258424047|ref|ZP_05686929.1| tRNA methyl transferase [Staphylococcus aureus A9635]
 gi|257845668|gb|EEV69700.1| tRNA methyl transferase [Staphylococcus aureus A9635]
          Length = 372

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V       +L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHNALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F++    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFDEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|52081229|ref|YP_080020.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC
           14580]
 gi|52786609|ref|YP_092438.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC
           14580]
 gi|319644804|ref|ZP_07999037.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2]
 gi|73919897|sp|Q65GR9|MNMA_BACLD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52004440|gb|AAU24382.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus licheniformis ATCC 14580]
 gi|52349111|gb|AAU41745.1| TrmU [Bacillus licheniformis ATCC 14580]
 gi|317392613|gb|EFV73407.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2]
          Length = 372

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 199/383 (51%), Gaps = 21/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  +VC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIKVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D    R  M R +D  +DQ+YFL   T++QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRTDGRVKMLRGLDENKDQTYFLNQLTEEQLSKVLFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A+E GL  A K DS  ICF+ +  +   + +     A  GD+  + G+  
Sbjct: 173 QLQKSRVREIAKEAGLATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMRTMEGEFK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP FVV  D   + + V        L   +I    ++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNILYVDQGFDNPLLFSDKITATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           ++  G+F     +   C  K R  Q    V V+    D   V F++    V  GQA VFY
Sbjct: 291 FVHKGVFGGE--EELACTAKFRYRQADHEVTVRMTGTDEAEVVFKEPVRAVTPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 349 KGE----ECLGGGTIDDVFKDGQ 367


>gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1]
 gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Anoxybacillus flavithermus WK1]
          Length = 371

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D  RVC+
Sbjct: 9   RVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYEDVVRVCN 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L     LGAD L
Sbjct: 66  QIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMALGADYL 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G+       + R +D  +DQ+YFL    Q QL  + FP+G+++K  VR
Sbjct: 126 ATGHYARVAYRDGE-----YQLLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A+E GL  A K DS  ICF+ +  +   +       A  G++  L+G++ G H+G++ 
Sbjct: 181 EIAKEAGLATAGKKDSTGICFIGERNFKQFLSNYLP--AQPGEMQTLDGEVKGTHDGLMY 238

Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317
           YTIGQR GLG+   GEP FVV  +   + + V      E L    I    +NW+ D    
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSDRKPN 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +     C  K R  Q  VPV V+  D+    V F +    V  GQA VFY  +    +
Sbjct: 299 EPIA----CTAKFRYRQPDVPVTVEMIDETTARVSFSQRVRAVTPGQAVVFYNGE----Q 350

Query: 377 VLGGGIISGSKRSD 390
            LGGG I    R+ 
Sbjct: 351 CLGGGTIDQVFRNG 364


>gi|75674801|ref|YP_317222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|123614062|sp|Q3SV21|MNMA_NITWN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|74419671|gb|ABA03870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/397 (53%), Positives = 280/397 (70%), Gaps = 5/397 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V   + V HYV DYE RFR  VI  FA SYA+GETP+PC++CNR VKF D
Sbjct: 62  AGQDIHDARNVAARLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRQVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR          R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGAAALATGHYVSSRRLAD----GSRALLCAADTDRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K+  R+LAR  GL +ADK DSQDICFV  G+Y D++ R+     + GDIV L
Sbjct: 178 RFPLGDMTKQQTRELARRFGLSVADKHDSQDICFVPTGRYTDIISRLKPNAMVSGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G ++G H GI+++T+GQRRGLG+A G PL+V+ LD  + RV+VGPRE+L++HRI LR++
Sbjct: 238 DGHVIGHHEGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + A+  G + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDRAIGAGLELFVRVRSTRRPQPAWLRVVDGRYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS-VIGDEF 404
                ++RVLGGG I+ +    A E +  S  +   F
Sbjct: 358 DGAEGQSRVLGGGFIARAMAQRANEAAAQSGTLAQSF 394


>gi|226312727|ref|YP_002772621.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
 gi|226095675|dbj|BAH44117.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
          Length = 370

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/381 (36%), Positives = 202/381 (53%), Gaps = 27/381 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P+D RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 2   KRPEDTRVVVGMSGGVDSSVTAYLLKQQGYDVIGIFMKNWDD---TDEFGHCTAEEDFQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            RRVC+ I + +Y  ++E+ + + V   F   Y  G TP P V CNR +KF +LL+    
Sbjct: 59  VRRVCEQIGIPYYTVNFEKEYMDKVFQYFLDEYKRGRTPNPDVMCNREIKFGELLAKVMD 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + +   G+       + R  D  +DQ+YFL    Q+QL    FP+G +
Sbjct: 119 LGADYIATGHYAQVKYIDGE-----YKLIRGADNNKDQTYFLNVLGQEQLSKTMFPIGHL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++A + GL  A K DS  ICF+ +  + + ++      A +G+I  ++G ++G 
Sbjct: 174 PKPQVREIAEKAGLYTAKKKDSTGICFIGERNFREFLQNYLP--AKQGNIETVDGAVIGT 231

Query: 256 HNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLRE 307
           H+G++ YT+GQR+     G     G+P FVV  D   + +IVG       L    +    
Sbjct: 232 HDGLMYYTLGQRQGLGIGGGHGTSGQPWFVVDKDLERNALIVGEGSDHIRLYSKSLLATN 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           ++W+ D        + F C  K R  Q    V V   +DG V V F++ +  V  GQA V
Sbjct: 292 VSWVSD----KKPSETFTCTAKFRYRQPDQGVTVHLLEDGNVEVVFDQPQKAVTPGQAVV 347

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY  +      LGGG I   +
Sbjct: 348 FYNGEV----CLGGGTIDKVR 364


>gi|258539512|ref|YP_003174011.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus Lc 705]
 gi|257151188|emb|CAR90160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus Lc 705]
          Length = 372

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 2   DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 59  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D +    M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 119 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H
Sbjct: 175 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 232

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 233 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W       +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 293 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSK 387
             +      LGGG I  + 
Sbjct: 349 DGE----ECLGGGTIDAAY 363


>gi|325567216|ref|ZP_08143883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158649|gb|EGC70795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 372

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 199/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +  +    D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 119 GADYVATGHYAQVTV----DENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 175 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G A  EP FVV  D  ++ + VG      +L  +R+   +I+
Sbjct: 233 DGLMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYAYRLEASQIH 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           +      E      F C  K R  Q  VPV V+  D D   V F++    +  GQA VFY
Sbjct: 293 FTT----EQDRGTEFSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +     + +
Sbjct: 349 DG----MECLGGGLIDAAYKEAKELQYV 372


>gi|125624516|ref|YP_001032999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493324|emb|CAL98297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071310|gb|ADJ60710.1| tRNA-specific 2-thiouridylase MnmA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 384

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 12  KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 69  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 129 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG     E L    +   
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 302

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++++  +            C  K R  Q+   V +  N D V VDF++    +  GQA V
Sbjct: 303 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 358

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGG +I  + +   V +  
Sbjct: 359 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 384


>gi|257876279|ref|ZP_05655932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC20]
 gi|257810445|gb|EEV39265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC20]
          Length = 372

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +  +    D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 119 GADYVATGHYAQVTV----DENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 175 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G A  EP FVV  D  ++ + VG      +L   R+   +I+
Sbjct: 233 DGLMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIH 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           +      E      F C  K R  Q  VPV V+  D D   V F++    +  GQA VFY
Sbjct: 293 FTT----EQDRGTEFSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +     + +
Sbjct: 349 DG----MECLGGGLIDAAYKEAKELQYV 372


>gi|281491325|ref|YP_003353305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis KF147]
 gi|14195271|sp|Q9CHA1|MNMA_LACLA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|281375066|gb|ADA64584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 376

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 196/390 (50%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 4   KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 61  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 121 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 177 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 234

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG     E L    +   
Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++++  +            C  K R  Q+   V +  N D V VDF++    +  GQA V
Sbjct: 295 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGG +I  + ++  V +  
Sbjct: 351 FYDGE----ECLGGAMIDVAYKAQKVMQYQ 376


>gi|257866681|ref|ZP_05646334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC30]
 gi|257872802|ref|ZP_05652455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC10]
 gi|257800639|gb|EEV29667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC30]
 gi|257806966|gb|EEV35788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC10]
          Length = 372

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +  +    D      M R +D  +DQ+YFL   +Q+QL    FPLG M+
Sbjct: 119 GADYVATGHYAQVTV----DENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 175 KSEVRAIAERAGLATAQKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G A  EP FVV  D  ++ + VG      +L   R+   +I+
Sbjct: 233 DGLMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIH 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           +      E      F C  K R  Q  VPV V+  D D   V F++    +  GQA VFY
Sbjct: 293 FTT----EQDRGTEFSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +     + +
Sbjct: 349 DG----MECLGGGLIDAAYKEAKELQYV 372


>gi|229552096|ref|ZP_04440821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229314529|gb|EEN80502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 377

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 7   DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 64  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D +    M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 124 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H
Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 237

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 238 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W       +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 298 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 353

Query: 369 TSDSNEARVLGGGIISGSK 387
             +      LGGG I  + 
Sbjct: 354 DGE----ECLGGGTIDAAY 368


>gi|217978097|ref|YP_002362244.1| tRNA-specific 2-thiouridylase MnmA [Methylocella silvestris BL2]
 gi|217503473|gb|ACK50882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocella silvestris BL2]
          Length = 415

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/385 (57%), Positives = 275/385 (71%), Gaps = 7/385 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL L K P   RVVVAMSGGVDSSVVAAL+K  GYDVI VT+QLY+  +A  RKG+C
Sbjct: 17  ELNSLGLPKPPAQTRVVVAMSGGVDSSVVAALMKEQGYDVIAVTMQLYDHGEAIHRKGAC 76

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DAR V   +++ HYV DYEERFR  VI PF+ SYA GETP+PCV CN  +KF+
Sbjct: 77  CAGQDIQDARLVAARLDIPHYVLDYEERFREKVINPFSHSYATGETPIPCVSCNSEIKFA 136

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DL      LGADVLATGHY+ +R     D    R++ R  D  RDQSYFLFATT++QL  
Sbjct: 137 DLFDTALDLGADVLATGHYVSTRS----DEAGERVLHRAFDGARDQSYFLFATTRRQLQM 192

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLGDM K  VR LAR  GL +ADK+DSQDICFV +GKY D+++R++ G A+ G+IVH
Sbjct: 193 LRFPLGDMTKTDVRALARRFGLIVADKADSQDICFVPKGKYSDLIERLSPGAAVPGEIVH 252

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           ++G++LGRH G+I+YTIGQRRGLG+     GEPLFV+ LD   +RV+VGPRE+L   R +
Sbjct: 253 IDGRVLGRHAGVIHYTIGQRRGLGLGDANAGEPLFVIKLDAAGARVVVGPREALATRRAH 312

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR +NW+GDG   D   +G   FV++RS++ PV   +   D G +V+F   E  V+ GQA
Sbjct: 313 LRAVNWIGDGELGDLPREGADIFVQVRSTRPPVAGRLYARDGGAHVEFVHDEDSVSPGQA 372

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
           CVFY SD   ARVLGGG IS ++ +
Sbjct: 373 CVFYASDQPRARVLGGGFISSTESA 397


>gi|146342725|ref|YP_001207773.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. ORS278]
 gi|205811327|sp|A4Z082|MNMA_BRASO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146195531|emb|CAL79558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bradyrhizobium sp. ORS278]
          Length = 397

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/390 (55%), Positives = 278/390 (71%), Gaps = 4/390 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + + HYV DYE+RFR +VI  FA+SYA+GETP+PC++CNR +KF D
Sbjct: 62  AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGA VLATGHY+ SR          R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLKTARELGASVLATGHYVASRRLPD----GSRALTCAADADRDQSYFLFATTREQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K  VR+LAR   L++ADK DSQDICFV  G+Y D++ ++       G+IV L
Sbjct: 178 RFPLGDMTKPEVRELARRFELEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG++LG H GI NYTIGQR+GLG+A G PL+VV LD  + RV+VGPRE+L  HRI LRE+
Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVTTRRVVVGPREALRTHRITLREV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDAAVRDGLELFVRVRSTRAPQPAWLRGADGSYEVELVGGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
            + S  ARVLGGG I  +    +    L+ 
Sbjct: 358 DAASGRARVLGGGFIQSAVAESSATAGLVR 387


>gi|319759218|gb|ADV71160.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14]
          Length = 419

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 46  MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 102

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 103 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 162

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 163 MNLGADYVATGHYAQ----VTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 276

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        EP FVV  D + + + VG     ESL    +  
Sbjct: 277 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 336

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA 
Sbjct: 337 SQVHFTRDMPEE----FTLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAV 392

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGG+I  + +     + +
Sbjct: 393 VFYDG----QECLGGGMIDMAYKDGEACQYI 419


>gi|258508299|ref|YP_003171050.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus GG]
 gi|257148226|emb|CAR87199.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus GG]
          Length = 372

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 2   DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 59  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D +    M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 119 NADYIAMGHYAQVKT----DEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H
Sbjct: 175 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 232

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 233 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W       +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 293 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSK 387
             +      LGGG I  + 
Sbjct: 349 DGE----ECLGGGTIDAAY 363


>gi|199598161|ref|ZP_03211583.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus
           rhamnosus HN001]
 gi|199590922|gb|EDY99006.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus
           rhamnosus HN001]
          Length = 377

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 189/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 7   DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 64  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D +    M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 124 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H
Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 237

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 238 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W       +A VDG     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 298 WTTG----EAPVDGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 353

Query: 369 TSDSNEARVLGGGIISGSK 387
             +      LGGG I  + 
Sbjct: 354 DGE----ECLGGGTIDAAY 368


>gi|289550612|ref|YP_003471516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658107|ref|ZP_07910979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis M23590]
 gi|289180144|gb|ADC87389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496436|gb|EFU84759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis M23590]
          Length = 370

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 22/378 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++EE + N V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEEEYWNKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R + Y  DDG     M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARLKRY--DDG--HVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E GL  A K DS  ICF+ +  +   + +     A  GD+  L+G+ +G H
Sbjct: 175 KKEVRRIAEEQGLATAKKKDSTGICFIGERNFKSFLSQYLP--AQAGDMRTLDGKKMGVH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLVDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               E     GF C  K R  Q    V V+R DD  + V F++    +  GQ+ VFY  +
Sbjct: 293 PVDLER----GFNCTAKFRYRQQDTEVSVERVDDHSIKVTFKEPVRAITPGQSVVFYDGE 348

Query: 372 SNEARVLGGGIISGSKRS 389
                 LGG  I    ++
Sbjct: 349 I----CLGGATIDDVYKT 362


>gi|153214224|ref|ZP_01949259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 1587]
 gi|153802718|ref|ZP_01957304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-3]
 gi|153828671|ref|ZP_01981338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 623-39]
 gi|254225518|ref|ZP_04919128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V51]
 gi|297578730|ref|ZP_06940658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC385]
 gi|124115473|gb|EAY34293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 1587]
 gi|124121758|gb|EAY40501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-3]
 gi|125621988|gb|EAZ50312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V51]
 gi|148875824|gb|EDL73959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 623-39]
 gi|297536324|gb|EFH75157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC385]
          Length = 372

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 8   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 65  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 300 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 356 FYQGEI----CLGGGIIE 369


>gi|212712841|ref|ZP_03320969.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
           30120]
 gi|212684533|gb|EEB44061.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
           30120]
          Length = 385

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 28/388 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            ++      +   ++V+V MSGGVDSSV A LL++ GY VIG+ ++ +      +    C
Sbjct: 12  PMSDNSTKSDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNWEEDDDEE---YC 68

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ VCD + +     ++   + + V   F   Y AG TP P + CN+ +KF 
Sbjct: 69  SAATDLADAQAVCDKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFK 128

Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L      LGAD +ATGHY+R R     D   +  + R +D  +DQSYFL+  + +Q+ 
Sbjct: 129 AFLEFAAEDLGADYIATGHYVRRR-----DVDGKSQLLRGLDNNKDQSYFLYTLSHEQVA 183

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV
Sbjct: 184 KSLFPVGELEKPEVRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIV 241

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESL 298
            ++G+I+G+H G++ +T+GQR+GLG+        EP +VV  D  ++++IV        L
Sbjct: 242 TVDGEIIGQHEGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNQLIVAQGHEHPRL 301

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               +  ++++W+        + +  +C VK R  Q  +P  +   + + + V F+    
Sbjct: 302 MSVGLIAQQLDWVD----RQPLTEPLRCVVKTRYRQADIPCTITPLSAEKIQVIFDYPVA 357

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385
            V  GQ+ VFY  +      LGGG+I  
Sbjct: 358 AVTPGQSAVFYIDEV----CLGGGVIEA 381


>gi|229515510|ref|ZP_04404969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TMA 21]
 gi|229520442|ref|ZP_04409867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TM 11079-80]
 gi|229525739|ref|ZP_04415144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae bv. albensis VL426]
 gi|229529783|ref|ZP_04419173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 12129(1)]
 gi|229333557|gb|EEN99043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 12129(1)]
 gi|229339320|gb|EEO04337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae bv. albensis VL426]
 gi|229342540|gb|EEO07533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TM 11079-80]
 gi|229347279|gb|EEO12239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TMA 21]
 gi|327483833|gb|AEA78240.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Vibrio cholerae LMA3894-4]
          Length = 371

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 299 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEI----CLGGGIIE 368


>gi|104781327|ref|YP_607825.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas entomophila L48]
 gi|122403646|sp|Q1IBE4|MNMA_PSEE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|95110314|emb|CAK15021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas entomophila L48]
          Length = 374

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGELTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   E
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+             +   K+R  Q      ++R ++G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNPIDLSSP----RRLTAKVRYRQGDQQCTLERTENGYRAMFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIETAEPW 370


>gi|259649616|dbj|BAI41778.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Lactobacillus rhamnosus GG]
          Length = 377

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 7   DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 64  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D +    M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 124 NADYIAMGHYAQVKT----DEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H
Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 237

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 238 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W       +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 298 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 353

Query: 369 TSDSNEARVLGGGIISGSK 387
             +      LGGG I  + 
Sbjct: 354 DGE----ECLGGGTIDAAY 368


>gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. HGF5]
 gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. HGF5]
          Length = 389

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/384 (36%), Positives = 208/384 (54%), Gaps = 23/384 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + + K   + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A  
Sbjct: 19  ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 75

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D RRVC+ +++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+
Sbjct: 76  DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 135

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    + +DG+ R  + R +D  +DQ+YFL A +Q+QL    FP
Sbjct: 136 KAMDLGADYVATGHYAR---VIEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLSKAMFP 190

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           +G + K  VR LA E GL  A K DS  +CF+ +  + + + +     A  GD+V  + G
Sbjct: 191 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 248

Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYL 305
           ++ GRH+G++ YT+GQR+     G   GEP FV   D  ++   V+ G   SL    +  
Sbjct: 249 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 308

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             +NW+     +    D + C  K R  Q    V +   +DG V+V F K +  +  GQA
Sbjct: 309 SGMNWIAGQ--DAMPKDAYACTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQA 366

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            VFY  D      LGGG I  + +
Sbjct: 367 VVFYQGDD----CLGGGTIETADK 386


>gi|311069234|ref|YP_003974157.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942]
 gi|310869751|gb|ADP33226.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942]
          Length = 371

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 203/383 (53%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D    +  M R +D  +DQ+YFL   T++QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRSGGKVRMLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I   +++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITAADVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W   G+ +        C  K R  Q+   V V+   +    V F++    V  GQA VFY
Sbjct: 291 WTRTGILDGK---EISCTAKFRYRQEDHKVTVRMTGESEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366


>gi|328542757|ref|YP_004302866.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Polymorphum gilvum SL003B-26A1]
 gi|326412503|gb|ADZ69566.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Polymorphum gilvum SL003B-26A1]
          Length = 393

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/379 (59%), Positives = 279/379 (73%), Gaps = 8/379 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL + P+D RVVVAMSGGVDSSVVA L+K++GYDV+GVTLQLY+   A +R G+CC
Sbjct: 2   LNSLDLPRRPQDTRVVVAMSGGVDSSVVAGLMKQEGYDVVGVTLQLYDHGAAVQRAGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARRV + + + HYV DYE RF+ AVI  FA SY AGETP+PCV CN+TVKFSD
Sbjct: 62  AGQDIHDARRVAERLGIPHYVLDYERRFKEAVIDRFAESYMAGETPIPCVACNQTVKFSD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R LGADVLATGHY+RS          RR + RP DL+RDQSYFLFATTQ+QL  L
Sbjct: 122 LLETARTLGADVLATGHYVRSAP-----AGNRRALYRPADLDRDQSYFLFATTQEQLDFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG   K  VR LAR  GL +ADK DSQDICFV +G+Y DV+ R+    A  GDIVH+
Sbjct: 177 RFPLGGRPKAEVRALARRFGLAVADKQDSQDICFVPKGRYADVIARLRPDAAEPGDIVHV 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRH+GII+YT+GQRRGLG+A GEPL+VV LD  + RV+VGPR++L   R+ LR++
Sbjct: 237 DGRVLGRHDGIIHYTVGQRRGLGIAAGEPLYVVRLDAAARRVVVGPRDALATRRLSLRDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           NWLG    +         F K+RS++ PVP  + R+ DG + V+    E GVA GQACVF
Sbjct: 297 NWLGAEPLD--PGAPVALFAKVRSTRPPVPAVLTRHADGAIEVELADGETGVAPGQACVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y +D  EARVLGGG I+ +
Sbjct: 355 YDADGAEARVLGGGWIARA 373


>gi|312866787|ref|ZP_07727000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis F0405]
 gi|311097570|gb|EFQ55801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis F0405]
          Length = 373

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     E+L    ++  ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLHASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373


>gi|270291927|ref|ZP_06198142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M143]
 gi|270279455|gb|EFA25297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M143]
          Length = 383

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 9   LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 65  DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 125 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDTGKDQTYFLSQLSQEQLQKTMFP 180

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 181 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMMTMDGR 238

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 239 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 298

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  +   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 299 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 354

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 355 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 383


>gi|154686891|ref|YP_001422052.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens
           FZB42]
 gi|166234844|sp|A7Z745|MNMA_BACA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|154352742|gb|ABS74821.1| TrmU [Bacillus amyloliquefaciens FZB42]
          Length = 371

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 142/383 (37%), Positives = 199/383 (51%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R     G        M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARVDRSAGT-----VRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I    ++
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           W   GL +        C  K R  Q+   V V+   DD   V F+     V  GQA VFY
Sbjct: 291 WTRPGLMDG---GEMTCTAKFRYRQEDHKVTVKMTGDDEAEVIFDGQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366


>gi|328554370|gb|AEB24862.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens
           TA208]
          Length = 371

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 142/383 (37%), Positives = 199/383 (51%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D       M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRSGDTVRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W   GL +        C  K R  Q+   V V+    D   + F+K    V  GQA VFY
Sbjct: 291 WTRPGLMDG---GEMTCTAKFRYRQEDHKVTVKMTGADEAEIIFDKQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366


>gi|82751221|ref|YP_416962.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
           [Staphylococcus aureus RF122]
 gi|123547857|sp|Q2YT57|MNMA_STAAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82656752|emb|CAI81181.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase tRNA
           [Staphylococcus aureus RF122]
          Length = 372

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 205/379 (54%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG II    +++
Sbjct: 351 V----CLGGAIIDDVFKNE 365


>gi|15902166|ref|NP_357716.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae R6]
 gi|15457661|gb|AAK98926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae R6]
          Length = 391

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 17  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 73  DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG +KK  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 189 LGHLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  +   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 307 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 362

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 391


>gi|15924611|ref|NP_372145.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156979939|ref|YP_001442198.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006407|ref|ZP_05145008.2| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|24638325|sp|Q931Q6|MNMA_STAAM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235085|sp|A7X333|MNMA_STAA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14247392|dbj|BAB57783.1| tRNA-methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722074|dbj|BAF78491.1| 5-methylaminomethyl-2-thiouridylate- methyltransf erase
           [Staphylococcus aureus subsp. aureus Mu3]
          Length = 372

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|307702622|ref|ZP_07639574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
 gi|307623738|gb|EFO02723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
          Length = 373

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYIATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|307705802|ref|ZP_07642645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK597]
 gi|307620634|gb|EFN99727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK597]
          Length = 373

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/391 (35%), Positives = 198/391 (50%), Gaps = 26/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDM 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +  
Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA 
Sbjct: 291 SQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAV 346

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY  +      LGGG+I  + R   V + +
Sbjct: 347 VFYDGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|307710241|ref|ZP_07646684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK564]
 gi|307619003|gb|EFN98136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK564]
          Length = 373

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|323442826|gb|EGB00451.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O46]
          Length = 372

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 207/379 (54%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +  +DG     M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH--EDGNVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|328462804|gb|EGF34672.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 372

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A  D  D 
Sbjct: 2   DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y AG TP P V CN+ +KF   L    QL
Sbjct: 59  AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY + +     D +    M R  D  +DQ+YFL   +Q QL    FP+G ++
Sbjct: 119 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H
Sbjct: 175 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 232

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D + + + VG      +L    +    +N
Sbjct: 233 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W       +A  DG     K R  Q    V +  +DDG   VDF+     +  GQA VFY
Sbjct: 293 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTAIVDFDVPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSK 387
             +      LGGG I  + 
Sbjct: 349 DGE----ECLGGGTIDAAY 363


>gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
           [Oceanobacillus iheyensis HTE831]
 gi|30173412|sp|Q8CXC7|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Oceanobacillus iheyensis HTE831]
          Length = 371

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/380 (36%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KN KD RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D  D
Sbjct: 2   KNNKDTRVVVGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDFDD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RVC+ + + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L     
Sbjct: 59  VVRVCNQLEIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHALA 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY + R     D   R  M R  D  +DQ+YFL   ++  L  + FPLG +
Sbjct: 119 LGADYLATGHYAQVRR----DKNGRVEMLRGNDENKDQTYFLNQLSEDVLDKVMFPLGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A+E  L  A+K DS  ICF+ +  + + +       A  G++  L+G + G 
Sbjct: 175 PKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLP--AQPGEMQTLDGIVKGS 232

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           H+G++ YT+GQR+GLG+   G+P FVV  +   + + VG     + L  + +   +INW+
Sbjct: 233 HDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGYENDYLYSNALVATDINWI 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 D + D F C  K R  Q    V V  ++++ VYV F++ +  +  GQA VFY  
Sbjct: 293 ----QPDKISDTFNCTAKFRYRQQDSEVNVTIKSENEVYVAFKEDQRAITPGQAVVFYDG 348

Query: 371 DSNEARVLGGGIISGSKRSD 390
           +      LGGG I    ++D
Sbjct: 349 EV----CLGGGTIDTIIKND 364


>gi|15927201|ref|NP_374734.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49483866|ref|YP_041090.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57650503|ref|YP_186516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|148268102|ref|YP_001247045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394170|ref|YP_001316845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221735|ref|YP_001332557.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509848|ref|YP_001575507.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316605|ref|ZP_04839818.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732278|ref|ZP_04866443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733127|ref|ZP_04867292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425746|ref|ZP_05602170.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428406|ref|ZP_05604804.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431044|ref|ZP_05607423.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433730|ref|ZP_05610088.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436645|ref|ZP_05612689.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876]
 gi|257793696|ref|ZP_05642675.1| tRNA methyl transferase [Staphylococcus aureus A9781]
 gi|258411005|ref|ZP_05681285.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763]
 gi|258420193|ref|ZP_05683148.1| tRNA methyl transferase [Staphylococcus aureus A9719]
 gi|258438195|ref|ZP_05689479.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299]
 gi|258443658|ref|ZP_05691997.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115]
 gi|258446865|ref|ZP_05695019.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300]
 gi|258448779|ref|ZP_05696891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus A6224]
 gi|258450551|ref|ZP_05698613.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948]
 gi|258453598|ref|ZP_05701576.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937]
 gi|262048616|ref|ZP_06021499.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Staphylococcus aureus D30]
 gi|269203247|ref|YP_003282516.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893124|ref|ZP_06301358.1| tRNA methyl transferase [Staphylococcus aureus A8117]
 gi|282904202|ref|ZP_06312090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906028|ref|ZP_06313883.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908941|ref|ZP_06316759.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911258|ref|ZP_06319060.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914426|ref|ZP_06322212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282916890|ref|ZP_06324648.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139]
 gi|282919396|ref|ZP_06327131.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427]
 gi|282920169|ref|ZP_06327894.1| tRNA methyl transferase [Staphylococcus aureus A9765]
 gi|282924721|ref|ZP_06332389.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101]
 gi|282928255|ref|ZP_06335860.1| tRNA methyl transferase [Staphylococcus aureus A10102]
 gi|283958382|ref|ZP_06375833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024678|ref|ZP_06379076.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus 132]
 gi|293503501|ref|ZP_06667348.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510518|ref|ZP_06669224.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809]
 gi|293531058|ref|ZP_06671740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294848651|ref|ZP_06789397.1| tRNA methyl transferase [Staphylococcus aureus A9754]
 gi|295406743|ref|ZP_06816548.1| tRNA methyl transferase [Staphylococcus aureus A8819]
 gi|295428198|ref|ZP_06820830.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275907|ref|ZP_06858414.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245675|ref|ZP_06929540.1| tRNA methyl transferase [Staphylococcus aureus A8796]
 gi|297590835|ref|ZP_06949473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|304380782|ref|ZP_07363449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|24638330|sp|Q99TM8|MNMA_STAAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56749735|sp|Q6GG82|MNMA_STAAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71153356|sp|Q5HFE1|MNMA_STAAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|172048920|sp|A6QHG3|MNMA_STAAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040510|sp|A6U290|MNMA_STAA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040511|sp|A5ITE6|MNMA_STAA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040512|sp|A8Z4F9|MNMA_STAAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829108|sp|Q2FGA5|MNMA_STAA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829109|sp|Q2FXV6|MNMA_STAA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13701419|dbj|BAB42713.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus N315]
 gi|49241995|emb|CAG40692.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284689|gb|AAW36783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|147741171|gb|ABQ49469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946622|gb|ABR52558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374535|dbj|BAF67795.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368657|gb|ABX29628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253724067|gb|EES92796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728883|gb|EES97612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271440|gb|EEV03586.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275247|gb|EEV06734.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278247|gb|EEV08889.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281823|gb|EEV11960.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283996|gb|EEV14119.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876]
 gi|257787668|gb|EEV26008.1| tRNA methyl transferase [Staphylococcus aureus A9781]
 gi|257840155|gb|EEV64619.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763]
 gi|257843904|gb|EEV68298.1| tRNA methyl transferase [Staphylococcus aureus A9719]
 gi|257848239|gb|EEV72230.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299]
 gi|257851064|gb|EEV75007.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115]
 gi|257854440|gb|EEV77389.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300]
 gi|257858057|gb|EEV80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus A6224]
 gi|257861709|gb|EEV84508.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948]
 gi|257864329|gb|EEV87079.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937]
 gi|259163263|gb|EEW47822.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Staphylococcus aureus D30]
 gi|262075537|gb|ACY11510.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941107|emb|CBI49493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313556|gb|EFB43951.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101]
 gi|282317206|gb|EFB47580.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427]
 gi|282319377|gb|EFB49729.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139]
 gi|282321607|gb|EFB51932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324953|gb|EFB55263.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327205|gb|EFB57500.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331320|gb|EFB60834.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590062|gb|EFB95144.1| tRNA methyl transferase [Staphylococcus aureus A10102]
 gi|282594517|gb|EFB99502.1| tRNA methyl transferase [Staphylococcus aureus A9765]
 gi|282595820|gb|EFC00784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282764442|gb|EFC04568.1| tRNA methyl transferase [Staphylococcus aureus A8117]
 gi|283470898|emb|CAQ50109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790531|gb|EFC29348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817303|gb|ADC37790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus 04-02981]
 gi|290920326|gb|EFD97392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095167|gb|EFE25432.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466882|gb|EFF09402.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809]
 gi|294824677|gb|EFG41100.1| tRNA methyl transferase [Staphylococcus aureus A9754]
 gi|294968490|gb|EFG44514.1| tRNA methyl transferase [Staphylococcus aureus A8819]
 gi|295128556|gb|EFG58190.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297177326|gb|EFH36578.1| tRNA methyl transferase [Staphylococcus aureus A8796]
 gi|297575721|gb|EFH94437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|302333295|gb|ADL23488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751450|gb|ADL65627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340658|gb|EFM06591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312437911|gb|ADQ76982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830008|emb|CBX34850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129903|gb|EFT85893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195521|gb|EFU25908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198681|gb|EFU29009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140492|gb|EFW32346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144031|gb|EFW35800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439031|gb|EGA96763.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O11]
 gi|329314296|gb|AEB88709.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727166|gb|EGG63622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728421|gb|EGG64858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 372

 Score =  501 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 374

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 201/390 (51%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 2   QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 59  VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    +  D      + R  D  +DQ+YFL   +  QL  + FP+G++
Sbjct: 119 LGADYIATGHYAQ----LTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++AR+ GL  ADK DS  ICF+ +  +   +       A  G ++ ++G++ G+
Sbjct: 175 VKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQ 232

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H+G++ YTIGQRRGLG+       +P FVV  D   + + VG     E L    +   +I
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDI 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ +          F C  K R  Q    V V  +DDG  V VDF+     +  GQA V
Sbjct: 293 HWVNNLDR----GQDFHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  + +     + +
Sbjct: 349 FYDGE----ECLGSAIIDAAYKQAEELQYV 374


>gi|303260932|ref|ZP_07346881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303269624|ref|ZP_07355383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS458]
 gi|301801084|emb|CBW33752.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae INV200]
 gi|302637769|gb|EFL68255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640826|gb|EFL71214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS458]
 gi|332077431|gb|EGI87892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA41301]
          Length = 373

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|66046419|ref|YP_236260.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae B728a]
 gi|75501528|sp|Q4ZRK0|MNMA_PSEU2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|63257126|gb|AAY38222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. syringae B728a]
          Length = 376

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 199/388 (51%), Gaps = 26/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ 
Sbjct: 6   PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++G
Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D  ++ +IVG       L    +   
Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             +   K+R  Q   P  +++  DG    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSSP----RRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394
           FY  +      LGGG+I  ++     ++
Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTTKDK 375


>gi|49474501|ref|YP_032543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella quintana str. Toulouse]
 gi|81646912|sp|Q6FZ46|MNMA_BARQU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49240005|emb|CAF26420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella quintana str. Toulouse]
          Length = 408

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/395 (57%), Positives = 292/395 (73%), Gaps = 5/395 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P + R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+   A+ R G+CC
Sbjct: 3   LNSLDLPGQPDNSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PCV CN+TVKF+D
Sbjct: 63  AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCVACNQTVKFAD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGAD LATGHYIRSR +        R + RP D+ERDQSYFLFATTQ+Q+  L
Sbjct: 123 LLATARELGADALATGHYIRSRPH-----GAHRALFRPFDVERDQSYFLFATTQEQIDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR++A EMG  +ADK DSQDICFV QGKY DV+ ++       G IVH+
Sbjct: 178 RFPLGDLPKAHVREIATEMGFVVADKHDSQDICFVPQGKYSDVITKLRPEAVNPGVIVHI 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +GQ+LG+H+GI+NYT+GQRRG+GVA GE L+VVYLD  ++RVIVGPRE LE H+++LR++
Sbjct: 238 DGQVLGKHSGIVNYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLGD   ++   DG +  VK+RS++      +   +    VDF + E  VA GQACVFY
Sbjct: 298 NWLGDERLDNFPSDGLEMAVKVRSTRPSHLARLHYQEGVFSVDFLECENSVAPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
             + + AR+LGGG ++ S+R+  VE  L  V+ + 
Sbjct: 358 DGNGDGARILGGGFVTHSQRAVGVEMMLRRVLCNP 392


>gi|319946006|ref|ZP_08020255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus australis ATCC 700641]
 gi|319747814|gb|EFW00059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus australis ATCC 700641]
          Length = 373

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     E+L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVTFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373


>gi|153826012|ref|ZP_01978679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-2]
 gi|149740232|gb|EDM54379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-2]
          Length = 372

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 8   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 65  QAVCDKIGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 300 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 356 FYQGEI----CLGGGIIE 369


>gi|317491853|ref|ZP_07950288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920287|gb|EFV41611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 367

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 199/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D      + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRR-----DIDGTTQLLRGVDTNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G+
Sbjct: 175 EKPEVRKIAEQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIMTVDGEEIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V       SL    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGEDPWYVVEKDLENNVLLVAQGHDHPSLYSQGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        V + F+C VK R  Q  +   V   DD  + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RKTVTEPFRCVVKTRYRQPDIACTVTPIDDERIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 349 FYIDEV----CLGGGVIE 362


>gi|90579124|ref|ZP_01234934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio angustum S14]
 gi|90439957|gb|EAS65138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio angustum S14]
          Length = 371

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 195/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY R      +    +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPQMLRGVDNNKDQSYFLYTLSHEQIARSLFPVGEL 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G IV  + G+ +G
Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIG 235

Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
            H G++ +T+GQR+GL       G    +  +VV  D  ++ +IVG       L+ + + 
Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVKNNLLIVGQGKDHPRLKSNGLI 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
            ++++W+        + +   C VK R  Q  +P  +   DD  + V F++ ++ V  GQ
Sbjct: 296 AKQLHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGGII 
Sbjct: 352 SAVFYNGEI----CLGGGIIE 368


>gi|262281666|ref|ZP_06059435.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
 gi|262262120|gb|EEY80817.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
          Length = 373

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDKAYKNGQVLQYI 373


>gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 374

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 200/390 (51%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 2   QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 59  VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    +  D      + R  D  +DQ+YFL   +  QL  + FP+G++
Sbjct: 119 LGADYIATGHYAQ----LTRDADGHNHLLRASDGNKDQTYFLSQLSADQLDRVMFPIGNL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +ARE GL  ADK DS  ICF+ +  + + +       A  G ++ ++G++ G+
Sbjct: 175 VKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLP--ATPGKMMTVDGEVKGQ 232

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H+G++ YTIGQRRGLG+       +P FVV  D   + + VG       L    +   +I
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ +          F C  K R  Q    V V  +DDG  V VDF+     +  GQA V
Sbjct: 293 HWVNNLDR----GKDFHCTAKFRYRQKDTGVTVHISDDGQSVRVDFDAPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  D      LG  II  + +     + +
Sbjct: 349 FYDGD----ECLGSAIIDAAYKQAKELQYV 374


>gi|150391390|ref|YP_001321439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus metalliredigens QYMF]
 gi|205811141|sp|A6TUB2|MNMA_ALKMQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149951252|gb|ABR49780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus metalliredigens QYMF]
          Length = 369

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 198/383 (51%), Gaps = 25/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+PKD +VV+ MSGGVDSSV A  LK  GYDVIG+ ++ ++        G C A +D 
Sbjct: 1   MKKDPKDTKVVIGMSGGVDSSVAALKLKEQGYDVIGIFMKNWDEPD---EYGYCTAAEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  EDVRRVCEQIGIPYYTVNFEKEYWEKVFQYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY +     G+       + R +D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 LKLGADYLATGHYAQVDYKDGE-----YRLLRGVDSNKDQTYFLNTLGQYQLSKAMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K+ VR++A    L  A K DS  ICF+ +  + + + +     A  G++  L+G + 
Sbjct: 173 HIDKKKVREMALAHDLVTAKKKDSTGICFIGERNFKEFLSQYLP--AQPGEMRDLSGNVK 230

Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           G+H+G++ +T+GQR+     G   GEP FVV  D  ++ + V       SL  + +   +
Sbjct: 231 GKHDGLMYHTLGQRKGLGIGGSGSGEPWFVVSKDLKNNILYVVQGEDHPSLYTYGLLATD 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366
           ++W+     E  +   F C  K R  Q    V VQ    D   V F+  +  V  GQA V
Sbjct: 291 LHWVS----EKEIPQTFTCTAKFRYRQPDQNVTVQLTGGDTCKVLFDGPQKAVTPGQAVV 346

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  ++     LGGGII  + ++
Sbjct: 347 FYNGEA----CLGGGIIDETIKT 365


>gi|254503485|ref|ZP_05115636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Labrenzia alexandrii DFL-11]
 gi|222439556|gb|EEE46235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Labrenzia alexandrii DFL-11]
          Length = 449

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/387 (55%), Positives = 270/387 (69%), Gaps = 7/387 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
               LNSLDL   P+D RVVVAMSGGVDSSVVAA++  +GYDVIGVTLQLY+   A  + 
Sbjct: 55  PLNMLNSLDLPGRPEDTRVVVAMSGGVDSSVVAAMMHAEGYDVIGVTLQLYDHGAAVAKT 114

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
            SCCAG D++DARR  + I + HYV DYE RF+  V+  FA SY AGETP+PCV CN+TV
Sbjct: 115 KSCCAGVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTV 174

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF+DLL   R LGAD LATGHY+RS          +R + RP DL+RDQSYFLFATTQ+Q
Sbjct: 175 KFTDLLKTARDLGADALATGHYVRSATK-----GNKRALFRPADLDRDQSYFLFATTQEQ 229

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +RFPLG M K  VR LA E GL +A+K DSQDICFV  G Y  V++++    A  G+
Sbjct: 230 LDFVRFPLGGMPKSQVRTLAEEFGLSVANKPDSQDICFVPNGDYAAVIRKLRPNAAEPGE 289

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IVH++G++LG HNGII++TIGQRRG+GVA GEPL+VV LD +  RVIVGPRE+L    I 
Sbjct: 290 IVHMDGRVLGEHNGIIHFTIGQRRGIGVATGEPLYVVRLDADERRVIVGPREALATRTIL 349

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LRE+NW+GD   ++   D  + F K+RS++ P P  ++  +   +VD    E GVA GQA
Sbjct: 350 LREMNWIGDQPLDEG--DEIEVFAKVRSTRPPAPAALRILNGKAFVDLANGETGVAPGQA 407

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391
           CVF+ SD   ARVLGGG I  ++R+  
Sbjct: 408 CVFFDSDDETARVLGGGWIHKTERTGT 434


>gi|254291552|ref|ZP_04962342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae AM-19226]
 gi|150422504|gb|EDN14461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae AM-19226]
          Length = 372

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 191/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 8   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 65  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +    +  +DD + V F++ +V V  GQ+ V
Sbjct: 300 LHWVD----RTPITGPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 356 FYQGEI----CLGGGIIE 369


>gi|306828717|ref|ZP_07461909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis ATCC 6249]
 gi|304428895|gb|EFM31983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis ATCC 6249]
          Length = 373

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 378

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 198/380 (52%), Gaps = 24/380 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A  D 
Sbjct: 2   MAKPNSETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGYCTAEADA 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I++ +Y  ++E+++ + V   F   Y  G TP P V CNR +KF + L+  
Sbjct: 59  EDVRRVCEQIDIPYYTVNFEKQYYDKVFAYFLEEYKRGRTPNPDVMCNREIKFGEFLNKA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       +  +   + R +D  +DQ+YFL A  Q+QL    FP+G
Sbjct: 119 LDLGADYVATGHYARVV-----EENKTYKLLRGVDSNKDQTYFLNALNQEQLSKAMFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
            + K  VR +A E GL  A K DS  +CF+ +  + + +       A  GD++  + G++
Sbjct: 174 HLPKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNFKEFLSNYLP--AQSGDMIDIVTGEV 231

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            GRH+G++ YT+GQR+     G   GEP FV   D   + + V       SL    +   
Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGTGEPWFVADKDLERNILYVVQGDKHPSLYSTSLIAS 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
            +NW+     +      +KC  K R  Q    V + +  DG V+V F++ +  +  GQA 
Sbjct: 292 GVNWIAGA--DKMPEGPYKCTAKFRYRQPDQGVTLTKQPDGTVHVAFDEPQKAITPGQAV 349

Query: 366 VFYTSDSNEARVLGGGIISG 385
           VFY  +      LGGG I  
Sbjct: 350 VFYQGE----ECLGGGTIEA 365


>gi|146319824|ref|YP_001199536.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 05ZYH33]
 gi|253752800|ref|YP_003025941.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis SC84]
 gi|253754625|ref|YP_003027766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis P1/7]
 gi|253756558|ref|YP_003029698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis BM407]
 gi|205828994|sp|A4VYE7|MNMA_STRSY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829102|sp|A4W4N7|MNMA_STRS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145690630|gb|ABP91136.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus suis 05ZYH33]
 gi|251817089|emb|CAZ52741.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis SC84]
 gi|251819022|emb|CAZ56869.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis BM407]
 gi|251820871|emb|CAR47637.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis P1/7]
          Length = 374

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 MNLGADYVATGHYAQ----VTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +
Sbjct: 174 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        EP FVV  D + + + VG     ESL    +  
Sbjct: 232 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA 
Sbjct: 292 SQVHFTRDMPEE----FTLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGG+I  + +     + +
Sbjct: 348 VFYDG----QECLGGGMIDMAYKDGEACQYI 374


>gi|319405239|emb|CBI78844.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella sp. AR 15-3]
          Length = 409

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/393 (58%), Positives = 293/393 (74%), Gaps = 5/393 (1%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           RLNSLDL   P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+   A+ R G+C
Sbjct: 2   RLNSLDLPGYPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGAC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+
Sbjct: 62  CAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVACNQTVKFA 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+   +LGAD LATGHYIRSRL+        R + R +D +RDQSYFLFATTQ+Q+  
Sbjct: 122 DLLTTAYELGADALATGHYIRSRLH-----GAHRALFRSLDADRDQSYFLFATTQEQIDY 176

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY DV+ ++    A  G IVH
Sbjct: 177 LRFPLGDLSKEHVREIAAEMGLVVANKHDSQDICFVPQGKYSDVITKLRPEAANPGVIVH 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           ++GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD  ++ VIVGPRE LE  +++LR+
Sbjct: 237 IDGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENACVIVGPREMLETRKLFLRD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NWLGD   ++  +DG    VK+RS+  P    +       +VD  +SE GVA GQACV 
Sbjct: 297 VNWLGDEQLDNFPLDGIDVAVKVRSTCPPRSARLHYKQGLFFVDLLESESGVAPGQACVL 356

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y   S+EARVLGGG I+ ++R+   E+ L  V+
Sbjct: 357 YNDSSHEARVLGGGFITCAERAADTEKMLKRVL 389


>gi|182683091|ref|YP_001834838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CGSP14]
 gi|182628425|gb|ACB89373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CGSP14]
          Length = 391

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +
Sbjct: 17  LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L 
Sbjct: 73  DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FP
Sbjct: 133 YAMTLGADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+
Sbjct: 189 LGHLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            +G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +
Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
              ++++  +   E       +C  K R  Q    V V    D   V F + +  +  GQ
Sbjct: 307 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQRAITPGQ 362

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A VFY  +      LGGG+I  + R   V + +
Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 391


>gi|70731250|ref|YP_260991.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf-5]
 gi|123654441|sp|Q4K9U2|MNMA_PSEF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68345549|gb|AAY93155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 124/390 (31%), Positives = 197/390 (50%), Gaps = 26/390 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             + +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A  D+ 
Sbjct: 6   PSDTQKKRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAMDDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I    G+++G
Sbjct: 178 LEKPEVRAIAEKHDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        EP +V+  D   + +IVG       L    +   
Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLIKDLEHNELIVGQGNDHPWLFSRALLAS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +I W+             +   K+R  Q   P  +++  +G    F+  +  V  GQ+ V
Sbjct: 296 DIYWVNPIDLSLP----RRLTAKVRYRQSDQPCTLEKTTNGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGGG+I  ++   + +   
Sbjct: 352 FYDGEI----CLGGGVIEVAEPWSSKDARP 377


>gi|331267205|ref|YP_004326835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis Uo5]
 gi|326683877|emb|CBZ01495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis Uo5]
          Length = 373

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|239637572|ref|ZP_04678544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus warneri L37603]
 gi|239596790|gb|EEQ79315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus warneri L37603]
          Length = 372

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 20/378 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             +D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   TNQDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +          M R +D  +DQ+YFL   +QQQL  + FP+GD+ 
Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGIDNNKDQTYFLNQLSQQQLSKVMFPIGDID 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A E  L  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G H
Sbjct: 175 KKRVREIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGDMITLDGKKMGVH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   +++++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVLYVEQGFHHDALYSDYLIASDVSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +   +  +  GF C  K R  Q    VFVQR D+  + V F++    +  GQA VFY  +
Sbjct: 293 EQDVD--LDKGFYCTAKFRYRQKDTKVFVQREDNEAIRVTFDEPVRAITPGQAVVFYNEE 350

Query: 372 SNEARVLGGGIISGSKRS 389
                 LGG  I    ++
Sbjct: 351 V----CLGGATIDDVYKN 364


>gi|205822381|sp|A2RLX1|MNMA_LACLM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 376

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 4   KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 61  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 121 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG     E L    +   
Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++++  +            C  K R  Q+   V +  N D V VDF++    +  GQA V
Sbjct: 295 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGG +I  + +   V +  
Sbjct: 351 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 376


>gi|322386456|ref|ZP_08060085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus cristatus ATCC 51100]
 gi|321269542|gb|EFX52473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus cristatus ATCC 51100]
          Length = 373

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +G+H
Sbjct: 176 KPEVRAVAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMDGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     + L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNEPWFVVGKDLSQNILYVGQGFYHDHLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAIVNFDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + ++  V + +
Sbjct: 350 DGE----ECLGGGLIDRAYKNGQVLQYI 373


>gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus buchneri ATCC 11577]
          Length = 374

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/390 (34%), Positives = 201/390 (51%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 2   QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 59  VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    +  D      + R  D  +DQ+YFL   +  QL  + FP+G++
Sbjct: 119 LGADYIATGHYAQ----LTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++AR+ GL  ADK DS  ICF+ +  +   +       A  G ++ ++G++ G+
Sbjct: 175 VKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQ 232

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H+G++ YTIGQRRGLG+       +P FV+  D   + + VG     E L    +   +I
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ +          F C  K R  Q    V V  +DDG  V VDF+     +  GQA V
Sbjct: 293 HWVNNLDR----GQDFHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  + +     + +
Sbjct: 349 FYDGE----ECLGSAIIDAAYKQAEELQYV 374


>gi|315179841|gb|ADT86755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii NCTC 11218]
          Length = 372

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+    +Q+    FP+G++
Sbjct: 124 LDADYIAMGHYVRRTF---PEHGEKPQMLRGLDGNKDQSYFLYTLGHEQVARSLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ + +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +   V   +++ + V F++ +V V  GQ+ V
Sbjct: 299 LHWVD----RLPMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEV----CLGGGIIE 368


>gi|161503672|ref|YP_001570784.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865019|gb|ABX21642.1| hypothetical protein SARI_01756 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 383

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 201/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   A + N   +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MVEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRV-----DINGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +       C VK R  Q  +P  +   +DD + V
Sbjct: 291 GHEHPRLMSSGLIAQQLHWVD----REPFTGTLSCTVKTRYRQTDIPCTINALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|262402513|ref|ZP_06079074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC586]
 gi|262351295|gb|EEZ00428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC586]
          Length = 371

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 191/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDNNKDQSYFLYTLSHEQVTRSLFPVGDL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    +  ++D + V F+  +V V  GQ+ V
Sbjct: 299 LHWVD----RTPITEPLRCSVKTRYRQSDIACTIIPLSNDRIKVMFDDPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEI----CLGGGIIE 368


>gi|223933686|ref|ZP_03625662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis 89/1591]
 gi|223897639|gb|EEF64024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis 89/1591]
          Length = 419

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 46  MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 102

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 103 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 162

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 163 MNLGADYVATGHYAQ----VSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 276

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        EP FVV  D + + + VG     ESL    +  
Sbjct: 277 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 336

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA 
Sbjct: 337 SQVHFTRDMPEEFK----LECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQQAITPGQAV 392

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGG+I  + +     + +
Sbjct: 393 VFYDG----QECLGGGMIDMAYKDGEACQYI 419


>gi|289625417|ref|ZP_06458371.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649300|ref|ZP_06480643.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866846|gb|EGH01555.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 366

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|261346011|ref|ZP_05973655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rustigianii DSM 4541]
 gi|282565896|gb|EFB71431.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rustigianii DSM 4541]
          Length = 373

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 199/379 (52%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++V+V MSGGVDSSV A LL++ GY V+G+ ++ +      +    C A  D+ DA
Sbjct: 9   DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEE---YCSAATDLADA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +     ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 66  QAVCDKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 125

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 126 LGADYIATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSHEQIAKSLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G+
Sbjct: 181 EKPEVRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQ 238

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D   +++IV        L    +  ++
Sbjct: 239 HEGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVEKNQLIVAQGHEHPRLMSVGLIAQQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +P  +   + D + V F+     V  GQ+ V
Sbjct: 299 LDWVD----RQVLTEPLRCVVKTRYRQADIPCTITPLSADKIQVTFDYPVAAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGG+I  
Sbjct: 355 FYIDEV----CLGGGVIEA 369


>gi|301301190|ref|ZP_07207346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300214575|gb|ADJ78991.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT
           5713]
 gi|300851189|gb|EFK78917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 375

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 25/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ +  S   G C   +D  D
Sbjct: 2   KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P + CN+ VKF   L     
Sbjct: 59  VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + AD +A GHY + R     D   R  + R  D  +DQ+YFL   +Q+QL  + FP+G +
Sbjct: 119 IDADYIAMGHYAQLRR----DEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   +       A  G++V L+G++ G 
Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H G++NYTIGQR+GLG+       EP FV+  D  ++ ++VG     E L  + +   ++
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +++ D        D F C  K R  Q    V V+ N+D   V V F++    +  GQ  V
Sbjct: 293 SFVDDISDRG---DEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG G I  + +   + + +
Sbjct: 350 FYDGE----ECLGSGTIDHAYKESKLLQYV 375


>gi|146307422|ref|YP_001187887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas mendocina ymp]
 gi|205816890|sp|A4XUY9|MNMA_PSEMY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145575623|gb|ABP85155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas mendocina ymp]
          Length = 370

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 197/380 (51%), Gaps = 26/380 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + P   RV+V MSGGVDSSV A LL   GY V G+ ++ ++    ++    C A  D+ D
Sbjct: 2   QAPSTQRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLAD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     
Sbjct: 59  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G++
Sbjct: 119 LGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  GDI    GQ++GR
Sbjct: 174 EKPQVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGR 231

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        +P +V+  D   + +IVG       L    +   +
Sbjct: 232 HHGLMYHTIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNEHPWLFSRALLASD 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+             +   K+R  Q      +++ ++G    F++ +  V  GQ+ VF
Sbjct: 292 IYWVNPVDLSTP----RRLTAKVRYRQSDQACTLEKTENGYRAVFDEPQRAVTPGQSVVF 347

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +      LGGG+I  ++
Sbjct: 348 YDGEV----CLGGGVIETAQ 363


>gi|324991889|gb|EGC23812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK405]
 gi|324996221|gb|EGC28131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK678]
 gi|327458514|gb|EGF04864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1]
 gi|327471584|gb|EGF17027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK408]
 gi|327490314|gb|EGF22101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1058]
          Length = 373

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ + G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|167034615|ref|YP_001669846.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida GB-1]
 gi|189040506|sp|B0KMQ6|MNMA_PSEPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166861103|gb|ABY99510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida GB-1]
          Length = 374

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 196/382 (51%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGDLTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   E
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALLASE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+             +   K+R  Q      ++  + G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNPIDLSSP----RQLTAKVRYRQSDQQCTLELTETGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370


>gi|330940375|gb|EGH43479.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 366

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSPP----RLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|325689331|gb|EGD31337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK115]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ +   V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E  +    +C  K R  Q    V V    D   V+F++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEEFTI----ECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|289168790|ref|YP_003447059.1| tRNA methyl transferase [Streptococcus mitis B6]
 gi|288908357|emb|CBJ23199.1| tRNA methyl transferase [Streptococcus mitis B6]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R      DDG     M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYARVAR--DDDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA + GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEKAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|324989555|gb|EGC21501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK353]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F+K +  +  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|149005874|ref|ZP_01829603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP18-BS74]
 gi|225855906|ref|YP_002737417.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae P1031]
 gi|237649790|ref|ZP_04524042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821488|ref|ZP_04597333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|307126353|ref|YP_003878384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 670-6B]
 gi|254811467|sp|C1CI29|MNMA_STRZP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147762230|gb|EDK69191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP18-BS74]
 gi|225725914|gb|ACO21766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae P1031]
 gi|306483415|gb|ADM90284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 670-6B]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|309799040|ref|ZP_07693293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis SK1302]
 gi|308117275|gb|EFO54698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis SK1302]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEAGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373


>gi|330810455|ref|YP_004354917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327378563|gb|AEA69913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 374

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 196/383 (51%), Gaps = 26/383 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             +    RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  D+ 
Sbjct: 6   PSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I    G+++G
Sbjct: 178 LEKPEVRAIAEKHQLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        EP +V+  D   + +IVG       L    +   
Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLEHNELIVGQGNDHPWLFSRALLAS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +I W+        + +  +   K+R  Q   P  +++   G    F+  +  V  GQ+ V
Sbjct: 296 DIYWVNPID----LGEPRRLTAKVRYRQSDQPCTLEKTATGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  +      LGGG+I  ++  
Sbjct: 352 FYDGEI----CLGGGVIEVAEPW 370


>gi|293396528|ref|ZP_06640804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia odorifera DSM 4582]
 gi|291420792|gb|EFE94045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia odorifera DSM 4582]
          Length = 370

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     DGK R  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADFIATGHYVRRQDV---DGKNR--LLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV ++GQ +G 
Sbjct: 175 EKPQVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGQTIGE 232

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  +++++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNQLVVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +   V   D + + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQPLTAPLRCTVKTRYRQQDLACTVTPIDAERIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEI----CLGGGIIE 362


>gi|92116313|ref|YP_576042.1| tRNA-specific 2-thiouridylase MnmA [Nitrobacter hamburgensis X14]
 gi|122418585|sp|Q1QQB5|MNMA_NITHX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91799207|gb|ABE61582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter hamburgensis X14]
          Length = 400

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 210/385 (54%), Positives = 277/385 (71%), Gaps = 4/385 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL+L+  P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLELEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + + + HYV DYE RFR  VI  FA SYA+GETP+PC++CNR VKF D
Sbjct: 62  AGQDIHDARNVAERLGIPHYVLDYENRFRETVIENFADSYASGETPVPCIECNRLVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ S    G      R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGAAALATGHYVASHRMAG----GSRALLCAADADRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y D++ ++     + GDIV L
Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPTGRYTDIISQLKPNAMVSGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G ++G H+GI+++T+GQRRGLG+A G PL+V+ LD  + RV+VGPRE+L++HRI LR++
Sbjct: 238 DGHVIGHHDGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIILRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV  G + FV++RS++ P P +++  D    ++    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDRAVGAGLELFVRVRSTRKPQPAWLRAIDGRYEIELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVE 393
                +ARVLGGG I+ +    A E
Sbjct: 358 DGLEGQARVLGGGFIARAMARRANE 382


>gi|298487541|ref|ZP_07005583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157925|gb|EFH99003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 376

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 26/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ 
Sbjct: 6   PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++G
Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   
Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLIKDLDNNELIVGQGNDHPWLFSRALVST 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             K   K+R  Q   P  +++  DG    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394
           FY  +      LGGG+I  ++   + ++
Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375


>gi|89073381|ref|ZP_01159905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium sp. SKA34]
 gi|89050868|gb|EAR56342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium sp. SKA34]
          Length = 371

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 195/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY R      +    +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GDKPQMLRGVDNNKDQSYFLYTLSHEQIARSLFPVGEL 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G IV  + G+ +G
Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIG 235

Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
            H G++ +T+GQR+GL       G    +  +VV  D  S+ +IVG       L+ + + 
Sbjct: 236 EHQGLMYHTLGQRKGLLIGGQKGGNGHEDAWYVVDKDVKSNLLIVGQGKDHPRLKSNGLI 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
            ++++W+        + +   C VK R  Q  +P  +   DD  + V F++ ++ V  GQ
Sbjct: 296 AKQLHWVA----RKPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGGII 
Sbjct: 352 SAVFYNGEI----CLGGGIIE 368


>gi|228993134|ref|ZP_04153056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pseudomycoides DSM 12442]
 gi|228999183|ref|ZP_04158765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock3-17]
 gi|229006731|ref|ZP_04164365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock1-4]
 gi|228754592|gb|EEM04003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock1-4]
 gi|228760800|gb|EEM09764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides Rock3-17]
 gi|228766593|gb|EEM15234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pseudomycoides DSM 12442]
          Length = 376

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYIDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    I 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +D+ V +  ++    +  GQA VFY
Sbjct: 296 WVSNRAKE----KEFKCTAKFRYRQEDNKVTVQIVDDNTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|71735842|ref|YP_275272.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123635957|sp|Q48H61|MNMA_PSE14 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71556395|gb|AAZ35606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 376

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 26/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ 
Sbjct: 6   PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++G
Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   
Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             K   K+R  Q   P  +++  DG    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394
           FY  +      LGGG+I  ++   + ++
Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375


>gi|148987860|ref|ZP_01819323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP6-BS73]
 gi|148992708|ref|ZP_01822351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP9-BS68]
 gi|149017799|ref|ZP_01834258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP23-BS72]
 gi|168489391|ref|ZP_02713590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP195]
 gi|168493828|ref|ZP_02717971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC3059-06]
 gi|147926324|gb|EDK77397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147928434|gb|EDK79449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147931363|gb|EDK82341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP23-BS72]
 gi|183572139|gb|EDT92667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP195]
 gi|183576137|gb|EDT96665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC3059-06]
 gi|301793411|emb|CBW35778.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae INV104]
 gi|332075800|gb|EGI86267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA17570]
 gi|332076573|gb|EGI87035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA17545]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|307711099|ref|ZP_07647521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK321]
 gi|307617061|gb|EFN96239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK321]
          Length = 373

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 193/388 (49%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYREGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  +   +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKTFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|260768141|ref|ZP_05877075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii CIP 102972]
 gi|260616171|gb|EEX41356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii CIP 102972]
          Length = 372

 Score =  500 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+    +Q+    FP+G++
Sbjct: 124 LDADYIAMGHYVRRTF---PEHGEKPQMLRGLDGNKDQSYFLYTLGHEQVARSLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ + +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +   V   +++ + V F++ +V V  GQ+ V
Sbjct: 299 LHWVD----RMPMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEV----CLGGGIIE 368


>gi|325686453|gb|EGD28482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK72]
          Length = 373

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F++ +  +  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-44]
 gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-44]
          Length = 376

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYIDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E     GFKC  K R  Q+   V VQ  +D+ + +  ++    +  GQA VFY
Sbjct: 296 WVSNRAKE----KGFKCTAKFRYRQEDNKVTVQIVDDNTIRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264]
 gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus B4264]
          Length = 372

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371


>gi|116516757|ref|YP_815643.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae D39]
 gi|30173410|sp|Q8CWW0|MNMA_STRR6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122279467|sp|Q04MV1|MNMA_STRP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116077333|gb|ABJ55053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae D39]
          Length = 373

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG +K
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLK 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|238789081|ref|ZP_04632870.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
           33641]
 gi|238722845|gb|EEQ14496.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
           33641]
          Length = 373

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQPMGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +V   D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVADKDVANNILVVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+      + V + F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTEAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|329733069|gb|EGG69406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 372

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVV+ MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVIGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|127512489|ref|YP_001093686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella loihica PV-4]
 gi|166235081|sp|A3QD79|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella loihica PV-4]
          Length = 371

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 197/385 (51%), Gaps = 28/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ NP   +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+
Sbjct: 4   IEPNPNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R       D   +  M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRS-----DASGQSQMLRGVDGNKDQSYFLYTLSHEQIARSLFPV 175

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D ++      A  G I    G++
Sbjct: 176 GELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLP--AQPGKIETAEGEV 233

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + ++VG       L     Y
Sbjct: 234 IGEHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQGGKHPRLMSVGFY 293

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQ 363
             +++W+          DG K  VK R  Q  V   +    DD + V F++    V  GQ
Sbjct: 294 ADQLHWVD----RTGPNDGAKITVKTRYRQQDVACTLTYEGDDRIKVIFDEPVAAVTPGQ 349

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 350 SAVFYDGEV----CLGGGIIDSLIR 370


>gi|16419753|gb|AAL20163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261246446|emb|CBG24256.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase EC 2.1.1.61
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|323129504|gb|ADX16934.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 383

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N   +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  +   NDD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALNDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|229591246|ref|YP_002873365.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens SBW25]
 gi|259495834|sp|C3JY68|MNMA_PSEFS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229363112|emb|CAY50124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens SBW25]
          Length = 374

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 199/381 (52%), Gaps = 26/381 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             + +  RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  D+ 
Sbjct: 6   PSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I   +G+++G
Sbjct: 178 LEKPEVRKIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTDGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        EP +V+  D +++ +IVG       L    +   
Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLDNNVLIVGQGNEHPLLFSGALLAS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             +   K+R  Q   P  +++   G    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSTP----RRLTAKVRYRQGDQPCTLEKTATGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY  +      LGGG+I  ++
Sbjct: 352 FYDGEI----CLGGGVIEVAE 368


>gi|116511650|ref|YP_808866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107304|gb|ABJ72444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 384

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 194/390 (49%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 12  KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 69  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 129 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG     E L    +   
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 302

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++++  +            C  K R  Q+   V +    D V VDF++    +  GQA V
Sbjct: 303 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVV 358

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGG +I  + +   V +  
Sbjct: 359 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 384


>gi|118593646|ref|ZP_01551022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stappia aggregata IAM 12614]
 gi|118433757|gb|EAV40418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stappia aggregata IAM 12614]
          Length = 392

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/381 (56%), Positives = 272/381 (71%), Gaps = 7/381 (1%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           NSLDL   P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+   A  +  SCCA
Sbjct: 3   NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKAEGYDVIGVTLQLYDHGAAVSKAKSCCA 62

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D++DARR  +TI + HYV DYE RF+  V+  FA SY AGETP+PCV CN+TVKF+DL
Sbjct: 63  GVDIHDARRAAETIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   + LGAD LATGHY+RS          +R + RP DL+RDQSYFLFATTQ QL  +R
Sbjct: 123 LKTAKDLGADALATGHYVRS-----TQQGNKRALFRPADLDRDQSYFLFATTQDQLDFIR 177

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG M K  VR+LA E GL +A+K DSQDICFV  G Y +V++++    A  G+IVH++
Sbjct: 178 FPLGGMPKSKVRELAAEFGLTVANKPDSQDICFVPNGDYAEVIRKLRPNAAEPGEIVHMD 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG H+GII+YTIGQRRGLGVA G+PL+VV LD +  RV+VGPRE+L    I LRE+N
Sbjct: 238 GRVLGEHDGIIHYTIGQRRGLGVATGDPLYVVRLDPDERRVVVGPREALATRTILLREMN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W+GD   ++   D  + F K+RS++ P P  ++  +   +VD    E GVA GQACVF+ 
Sbjct: 298 WIGDQPLDEG--DEIELFAKVRSTRPPAPATLRILNGKGFVDLANGETGVAPGQACVFFD 355

Query: 370 SDSNEARVLGGGIISGSKRSD 390
           +D   ARVLGGG I  ++R+ 
Sbjct: 356 TDDETARVLGGGWIHKTERTG 376


>gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 393

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 23  DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 79

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 80  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 139

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 140 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 195

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 196 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 253

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +    I
Sbjct: 254 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSI 313

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +   K R  Q    V V    D   V F++ +  +  GQA VFY
Sbjct: 314 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFY 369

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGGII  + ++    + +
Sbjct: 370 DGE----ECLGGGIIDMAYKNGVACQYI 393


>gi|225857998|ref|YP_002739508.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae 70585]
 gi|254811463|sp|C1CAE7|MNMA_STRP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225721738|gb|ACO17592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 70585]
          Length = 373

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|221141109|ref|ZP_03565602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
          Length = 364

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 201/373 (53%), Gaps = 20/373 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIIS 384
                 LGG  I 
Sbjct: 351 V----CLGGATID 359


>gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 373

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 120 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +   K R  Q    V V    D   V F++ +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGGII  + ++    + +
Sbjct: 350 DGE----ECLGGGIIDMAYKNGVACQYI 373


>gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 374

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/390 (34%), Positives = 201/390 (51%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 2   QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 59  VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    +  D      + R  D  +DQ+YFL   +  QL  + FP+G++
Sbjct: 119 LGADYIATGHYAQ----LTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++AR+ GL  ADK DS  ICF+ +  +   +       A  G ++ ++G++ G+
Sbjct: 175 VKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQ 232

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H+G++ YTIGQRRGLG+       +P FV+  D   + + VG     E L    +   +I
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ +          F C  K R  Q    V V  +DDG  V VDF+     +  GQA V
Sbjct: 293 HWVNNLDR----GQDFHCTAKFRYRQRDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  + +     + +
Sbjct: 349 FYDGE----ECLGSAIIDAAYKQAEELQYV 374


>gi|149191014|ref|ZP_01869275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio shilonii AK1]
 gi|148835148|gb|EDL52124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio shilonii AK1]
          Length = 369

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 196/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+        +   +  M R +D  +DQSYFL+  +  Q+    FP+G++
Sbjct: 120 LDADYIAMGHYVSRTF---PENGEKPQMLRGLDSNKDQSYFLYTLSHDQVARSLFPVGEL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305
           H G++ +T+GQR+GL +          EP +V   +   + +I         L+ + +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGQKGGGGNEEPWYVAEKNLERNVLIAVQGADHPLLKSNGLRA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
            +++W+      +A+ +  +C VK R  Q  +P  +   +DD + V F++ +V V  GQ+
Sbjct: 295 SQLHWVS----REAIKEPMQCTVKTRYRQQDIPCTIIPIDDDNIKVIFDEPQVAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY+ +      LGGGII 
Sbjct: 351 AVFYSDNV----CLGGGIIE 366


>gi|299535696|ref|ZP_07049017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus fusiformis ZC1]
 gi|298728896|gb|EFI69450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus fusiformis ZC1]
          Length = 374

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 205/381 (53%), Gaps = 22/381 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            ++P  +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  
Sbjct: 4   TRDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYD 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D  +VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L    
Sbjct: 61  DVIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAM 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD LATGHY R    +  +G     M R +D  +DQ+YFL   +Q+QL  + FP+GD
Sbjct: 121 NLGADYLATGHYAR----IDRNGDGEVRMLRGVDDNKDQTYFLNQLSQEQLAHVMFPIGD 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K+ VR +A E GL  A K DS  ICF+ +  + + + +     A  G +  ++G ++G
Sbjct: 177 IEKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGKMETMDGVVMG 234

Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +H+G++ YT+GQR GLG+   GEP FV+  D   + ++VG     E      +   ++N+
Sbjct: 235 QHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLARNVLLVGQGFDNEYSYSTSLTAVKMNY 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                    +   F C  K R  Q   PV V+   DG  ++ F +    +  GQA V Y 
Sbjct: 295 TS----TKKLPGKFSCTAKFRYRQTDTPVEVEILPDGRAHITFAEPVRAITPGQAVVLYN 350

Query: 370 SDSNEARVLGGGIISGSKRSD 390
            +      +GGG I    +S+
Sbjct: 351 GE----ECMGGGTIDEVFKSN 367


>gi|160875703|ref|YP_001555019.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS195]
 gi|160861225|gb|ABX49759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS195]
 gi|315267892|gb|ADT94745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS678]
          Length = 392

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 24  IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 81  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 140

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 141 DEILDADYIAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 196

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 197 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 254

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 255 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 314

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         +DG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 315 VNQLHWVD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 370

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 371 SAVFYDGEV----CLGGGIIDQLIR 391


>gi|157370264|ref|YP_001478253.1| tRNA-specific 2-thiouridylase MnmA [Serratia proteamaculans 568]
 gi|166991124|sp|A8GDD5|MNMA_SERP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157322028|gb|ABV41125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia proteamaculans 568]
          Length = 367

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADFIATGHYVRRQ-----DVDSKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G IV ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVSVDGQTVGE 232

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        +   F+C VK R  Q  +P  V   D+  + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RLPLSGPFRCTVKTRYRQQDIPCTVTPLDEQRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQDEI----CLGGGIIE 362


>gi|327467648|gb|EGF13145.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK330]
          Length = 373

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ +   V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYV 373


>gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus NVH0597-99]
 gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus H3081.97]
 gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187]
 gi|218905591|ref|YP_002453425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH820]
 gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB102]
 gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus NVH0597-99]
 gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus H3081.97]
 gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH187]
 gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH820]
 gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB102]
          Length = 372

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371


>gi|322388413|ref|ZP_08062016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|321140726|gb|EFX36228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis ATCC 700779]
          Length = 373

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VLRDEDGVVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373


>gi|153000990|ref|YP_001366671.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS185]
 gi|151365608|gb|ABS08608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS185]
          Length = 392

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 24  IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 81  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 140

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 141 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 196

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 197 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 254

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 255 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 314

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 315 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 370

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 371 SAVFYDGEV----CLGGGIIDQLIR 391


>gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9241]
 gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141111|ref|YP_085718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus E33L]
 gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1]
 gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055]
 gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
 gi|301055904|ref|YP_003794115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis CI]
 gi|71658010|sp|Q634E9|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73919896|sp|Q6HDD0|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205814924|sp|A0RJ05|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811444|sp|B9IYG1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9241]
 gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus E33L]
 gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Q1]
 gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
 gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 371

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 291 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370


>gi|168483769|ref|ZP_02708721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042905|gb|EDT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1873-00]
          Length = 373

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG +K
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLK 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|30022472|ref|NP_834103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 14579]
 gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1134]
 gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis BMB171]
 gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus cereus ATCC 14579]
 gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1134]
 gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis BMB171]
 gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 372

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371


>gi|168487074|ref|ZP_02711582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570004|gb|EDT90532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 373

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|303255169|ref|ZP_07341245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS455]
 gi|303259175|ref|ZP_07345153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP-BS293]
 gi|303263258|ref|ZP_07349181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS397]
 gi|303265423|ref|ZP_07351323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS457]
 gi|302597999|gb|EFL65069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS455]
 gi|302639593|gb|EFL70050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP-BS293]
 gi|302644863|gb|EFL75110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS457]
 gi|302647031|gb|EFL77255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS397]
          Length = 373

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987]
 gi|73919894|sp|Q730D7|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10987]
          Length = 371

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 291 WVSNKAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370


>gi|218899565|ref|YP_002447976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9842]
 gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9842]
          Length = 372

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ + + E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNKVKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371


>gi|73919895|sp|Q812R6|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 291 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370


>gi|205829101|sp|B2IRK2|MNMA_STRPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|260772624|ref|ZP_05881540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio metschnikovii CIP 69.14]
 gi|260611763|gb|EEX36966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio metschnikovii CIP 69.14]
          Length = 372

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 191/382 (50%), Gaps = 26/382 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D        +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D
Sbjct: 3   DNRSANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIYLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQ---GEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+
Sbjct: 177 VGELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGK 234

Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303
           ++G H G++ +T+GQR+GL +        +P +V   D   + +I         L+   +
Sbjct: 235 VIGEHQGLMYHTLGQRKGLHIGGLKDGSEQPWYVAEKDLQRNVLIAVQGADHPLLKSQGL 294

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+        + +  +C VK R  Q  +   +   D+  + V F++ ++ V  G
Sbjct: 295 VASQLHWVS----RQTITEPTRCTVKTRYRQTDIACTIIPLDEQNIKVMFDEPQIAVTPG 350

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  +      LGGGII 
Sbjct: 351 QSAVFYQGEV----CLGGGIIE 368


>gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0488]
 gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0442]
 gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0193]
 gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0465]
 gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0389]
 gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0174]
 gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227817175|ref|YP_002817184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. CDC 684]
 gi|229601635|ref|YP_002868683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0248]
 gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0488]
 gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0193]
 gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0442]
 gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0389]
 gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0465]
 gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0174]
 gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. CDC 684]
 gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0248]
          Length = 372

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGG  I    RS  
Sbjct: 348 DGD----ECLGGATIDEVYRSGK 366


>gi|330828858|ref|YP_004391810.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Aeromonas veronii B565]
 gi|328803994|gb|AEB49193.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Aeromonas veronii B565]
          Length = 368

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 27/377 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA
Sbjct: 3   DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     +
Sbjct: 60  KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA  +ATGHY+R      DD   R  + R +D  +DQSYFL+  +++Q+    FP+GD+
Sbjct: 120 LGATYIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEKQVGQSLFPVGDL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + +     A  G I  ++G+++G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGKIETVDGKVIGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI 308
           H G++ +T+GQR+GLG+        E  +VV  +   + ++V  G    L    +   ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHPRLYSDGLIASQL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           +W+        + +  +C VK R  Q  +P  +Q  DD  + V F++ +  V  GQ+ VF
Sbjct: 293 HWVD----RTPIREPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVF 348

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LGGGII 
Sbjct: 349 YDGEV----CLGGGIIE 361


>gi|326623649|gb|EGE29994.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628111|gb|EGE34454.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 383

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   A + N   +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MVEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  +   +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282802|gb|EDT48226.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 406

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 36  DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 92

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 93  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 152

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG +K
Sbjct: 153 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLEKVMFPLGHLK 208

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 209 KPEVRKIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEH 266

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     ESL    +    I
Sbjct: 267 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSI 326

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +   K R  Q    V V    D   V F++ +  +  GQA VFY
Sbjct: 327 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVIFDEPQRAITPGQAVVFY 382

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGGII  + ++    + +
Sbjct: 383 DGE----ECLGGGIIDMAYKNGVACQYI 406


>gi|320086325|emb|CBY96098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 383

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N   +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  +   +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|307707803|ref|ZP_07644280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis NCTC 12261]
 gi|307616063|gb|EFN95259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis NCTC 12261]
          Length = 373

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/391 (35%), Positives = 198/391 (50%), Gaps = 26/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +N K  RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + ++V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDSVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++ + +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDSRDM 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +  
Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA 
Sbjct: 291 SQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAV 346

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY  +      LGGG+I  + R   V + +
Sbjct: 347 VFYDGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 371

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V++  ++    +  GQA VFY
Sbjct: 291 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVHILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370


>gi|326803425|ref|YP_004321243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651703|gb|AEA01886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 374

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 195/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K+ +VV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DKKNKKVVLGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYRDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + V   I + +Y  ++E+ + + V   F   Y    TP P V CN+ +KF   L     L
Sbjct: 60  QAVASQIGIPYYSVNFEKEYWDRVFEYFLDEYRHDRTPNPDVMCNKEIKFKAFLDYALDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +A GHY R R            + R +D  +DQ+YFL   +Q+QL    FP+G+++
Sbjct: 120 GADYVAMGHYARVRTNDQ----GEVELLRGVDSNKDQTYFLNQLSQEQLQHALFPIGELE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A +  L  A K DS  +CF+ +  +   +      +A  G +  L+GQ++  H
Sbjct: 176 KSEVRKIAEDHNLKTAHKKDSTGVCFIGERDFNAFLSNYL--LAKPGLMKTLDGQVMAEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           +G++ YTIGQR+GLG+        EP FV+  ++  + + VG       L    +   E+
Sbjct: 234 HGLMYYTIGQRKGLGIGGTKVGNNEPWFVIGKNQAKNELYVGQGYHHPLLYADYLLASEV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
           ++  D        + F C  K R  Q  +PV V   +DD + VDFE+    +  GQ+ VF
Sbjct: 294 SFTSDHF----PPEDFTCTAKFRYRQKDIPVKVSFLSDDHLRVDFEEPVRAITPGQSVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y  +      LGG  I  + + D   +  
Sbjct: 350 YKDEV----CLGGATIDAAYKDDKKLQYQ 374


>gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames]
 gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne]
 gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger
           B]
 gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum]
 gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
           Australia 94]
 gi|73919893|sp|Q81JE5|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. Ames]
 gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. Sterne]
          Length = 371

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 291 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGG  I    RS  
Sbjct: 347 DGD----ECLGGATIDEVYRSGK 365


>gi|328945150|gb|EGG39305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1087]
          Length = 373

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 199/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F++ +  +  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAAVNFDQPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYV 373


>gi|330016186|ref|ZP_08308416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. MS 92-3]
 gi|328529471|gb|EGF56376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. MS 92-3]
          Length = 388

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++   A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 6   VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 66  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYT 177

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     
Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V
Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al
           Hakam]
 gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-42]
 gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 95/8201]
 gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST26]
 gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 4342]
 gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis str. Al Hakam]
 gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 4342]
 gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST26]
 gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 95/8201]
 gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-42]
 gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 376

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|90961839|ref|YP_535755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius UCC118]
 gi|122449023|sp|Q1WTT7|MNMA_LACS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|90821033|gb|ABD99672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius UCC118]
          Length = 375

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 25/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ +  S   G C   +D  D
Sbjct: 2   KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P + CN+ VKF   L     
Sbjct: 59  VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + AD +A GHY + R     D   R  + R  D  +DQ+YFL   +Q+QL  + FP+G +
Sbjct: 119 IDADYIAMGHYAQLRR----DEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   +       A  G++V L+G++ G 
Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H G++NYTIGQR+GLG+       EP FV+  D  ++ ++VG     E L  + +   ++
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +++ D        D F C  K R  Q    V V+ N+D   V V F++    +  GQ  V
Sbjct: 293 SFVDDI---SDCGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG G I  + +   + + +
Sbjct: 350 FYDGE----ECLGSGTIDHAYKESKLLQYV 375


>gi|62127388|gb|AAX65091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 383

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   A + N   +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MVEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  +   +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376


>gi|149010994|ref|ZP_01832299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP19-BS75]
 gi|147764630|gb|EDK71560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP19-BS75]
          Length = 373

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDEAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|313498097|gb|ADR59463.1| MnmA [Pseudomonas putida BIRD-1]
          Length = 374

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLDEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGTLTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   E
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+        +    +   K+R  Q      ++R   G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNPVD----LGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370


>gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis Bt407]
 gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH676]
 gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus F65185]
 gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock4-2]
 gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-15]
 gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-Cer4]
 gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST24]
 gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1550]
 gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 172560W]
 gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10876]
 gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10876]
 gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 172560W]
 gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1550]
 gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST24]
 gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-Cer4]
 gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-15]
 gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock4-2]
 gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus F65185]
 gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH676]
 gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis Bt407]
 gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 376

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1271]
 gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1271]
          Length = 376

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    I 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|148983522|ref|ZP_01816841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP3-BS71]
 gi|221231050|ref|YP_002510202.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|254811464|sp|B8ZK04|MNMA_STRPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147923669|gb|EDK74781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP3-BS71]
 gi|220673510|emb|CAR67990.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|301799298|emb|CBW31824.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae OXC141]
          Length = 373

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|319746158|gb|EFV98430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae ATCC 13813]
          Length = 397

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 141/391 (36%), Positives = 202/391 (51%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L  +  ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D 
Sbjct: 24  LMTDNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 81  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 140

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 141 MTLGADYVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLG 196

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +
Sbjct: 197 HLQKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDM 254

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +  
Sbjct: 255 GEHAGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTA 314

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            EI++  D   E       +C  K R  Q    V V    +   V F+  +  +  GQA 
Sbjct: 315 SEIHFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAV 370

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY    NE   LGGG+I  + R D + + +
Sbjct: 371 VFY----NEQECLGGGMIDQAYRDDKICQYI 397


>gi|308174451|ref|YP_003921156.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307607315|emb|CBI43686.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus amyloliquefaciens DSM 7]
 gi|328912774|gb|AEB64370.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus amyloliquefaciens LL3]
          Length = 371

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 198/383 (51%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D       M R +D  +DQ+YFL    Q+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRSGDTVRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W   GL +        C  K R  Q+   V V+    D   + F+     V  GQA VFY
Sbjct: 291 WTRPGLMDG---GEMTCTAKFRYRQEDHKVTVKMTGADEAEIIFDGQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366


>gi|315640033|ref|ZP_07895158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus italicus DSM 15952]
 gi|315484161|gb|EFU74632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus italicus DSM 15952]
          Length = 378

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 201/389 (51%), Gaps = 25/389 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+  + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D
Sbjct: 7   KDNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     
Sbjct: 64  VAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALD 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M
Sbjct: 124 LGADYVATGHYAQ----VVRDEDGLTHMLRGVDNNKDQTYFLSQLSQEQLAKTMFPLGGM 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A+   L  A K DS  +CF+ +  +   +       A +G++V L+G++ G+
Sbjct: 180 EKSEVRAIAQRANLATAKKKDSTGVCFIGEKNFKQFLSHYLP--AQKGNMVTLDGEVKGQ 237

Query: 256 HNGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H+G++ YTI    G   G G    EP FVV  D  ++ + VG      +L    +   +I
Sbjct: 238 HDGLMYYTIGQRQGLGIGGGGKTQEPWFVVGKDLATNTLYVGQGFHHPALYADHLDASDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVF 367
           ++      +    + FKC  K R  Q  VPV V+   D+   V F++    +  GQA VF
Sbjct: 298 HFTN----QSGQPEEFKCTAKFRYRQQDVPVTVRLLADNRAEVYFDEPVRAITPGQAVVF 353

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + + V + +
Sbjct: 354 YDG----MECLGGGLIDRAFQENKVLQYV 378


>gi|21283300|ref|NP_646388.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486454|ref|YP_043675.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207658|ref|ZP_06924093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911740|ref|ZP_07129183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24638304|sp|Q8NW84|MNMA_STAAW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56749706|sp|Q6G8U8|MNMA_STAAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21204740|dbj|BAB95436.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244897|emb|CAG43358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887675|gb|EFH26573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885986|gb|EFK81188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 372

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KIEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|330958166|gb|EGH58426.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 366

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D      + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DTDGHTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D  ++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLQNNELIVGQGNDHPWLFSSALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RRLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEVAEPWTSKDK 365


>gi|257485430|ref|ZP_05639471.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330987933|gb|EGH86036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 366

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|330875781|gb|EGH09930.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 366

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 4222]
 gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 4222]
          Length = 376

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ + + E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKVKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|323137322|ref|ZP_08072400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocystis sp. ATCC 49242]
 gi|322397309|gb|EFX99832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocystis sp. ATCC 49242]
          Length = 412

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 213/387 (55%), Positives = 269/387 (69%), Gaps = 11/387 (2%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           + L L  +P D RVVVAMSGGVDSSVVAALLK  GYDV+GVTLQLY+  +A+ RKG+CCA
Sbjct: 9   DPLILPASPGDTRVVVAMSGGVDSSVVAALLKEQGYDVVGVTLQLYDHGEATHRKGACCA 68

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           GQD+ DAR V   + + H+V DYE RFR  VI  FA+SYA+GETP+PCV CN+ +KF+DL
Sbjct: 69  GQDIQDARAVAARLGIPHFVLDYERRFREKVIDEFAASYASGETPVPCVACNQFIKFADL 128

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               + LGA VLATGHYI SR    DDG+  R + R  D  RDQSYFLFATT++QL  LR
Sbjct: 129 FETAKDLGAHVLATGHYISSR----DDGEGGRALYRAKDASRDQSYFLFATTREQLRMLR 184

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLGD  K  VR++AR  GL++ADK DSQDICFV  G+Y DVV+R+     + GDIVH++
Sbjct: 185 FPLGDYTKAEVREMARNYGLEVADKPDSQDICFVPSGRYTDVVERLAPDAVVPGDIVHVD 244

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           G++LGRH G+++YTIGQRRGLG+         EPLFVV LD   + V+VGPRE+LE   +
Sbjct: 245 GRVLGRHAGVVHYTIGQRRGLGLGASVAGRDAEPLFVVRLDAARAEVVVGPREALETRAV 304

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
            LR++NW+G G F D    G     ++RS++ PVP  +   +D    V F  SE GV+ G
Sbjct: 305 ALRDVNWIGSGEFNDMPPQGIDIMARVRSTRPPVPARLIAREDSSATVVFAASEFGVSPG 364

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRS 389
           QACVFY    + ARVLGGG I+  + +
Sbjct: 365 QACVFYDRADDAARVLGGGFIAAVEPA 391


>gi|227890864|ref|ZP_04008669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ATCC 11741]
 gi|227867273|gb|EEJ74694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ATCC 11741]
          Length = 375

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 25/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ +  S   G C   +D  D
Sbjct: 2   KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P + CN+ VKF   L     
Sbjct: 59  VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKDGRTPNPDIMCNKEVKFKAFLDYAMS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + AD +A GHY + R     D   R  + R  D  +DQ+YFL   +Q+QL  + FP+G +
Sbjct: 119 IDADYIAMGHYAQLRR----DEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ +  +   +       A  G++V L+G++ G 
Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H G++NYTIGQR+GLG+       EP FV+  D  ++ ++VG     E L  + +   ++
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +++ D        D F C  K R  Q    V V+ N+D   V V F++    +  GQ  V
Sbjct: 293 SFVDDISDRG---DEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG G I  + +   + + +
Sbjct: 350 FYDGE----ECLGSGTIDHAYKESKLLQYV 375


>gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Bacillus anthracis str. A2012]
          Length = 376

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGG  I    RS  
Sbjct: 352 DGD----ECLGGATIDEVYRSGK 370


>gi|330972900|gb|EGH72966.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 366

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D  ++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++     ++
Sbjct: 348 ----CLGGGVIEIAEPWTTKDK 365


>gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 376

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  QD   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQDDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|148547054|ref|YP_001267156.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida F1]
 gi|166235073|sp|A5W1G2|MNMA_PSEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148511112|gb|ABQ77972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida F1]
          Length = 374

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   Q++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGALTELLKGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   +
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+        +    +   K+R  Q      ++R   G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNPVD----LGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370


>gi|117617943|ref|YP_855954.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166234841|sp|A0KI53|MNMA_AERHH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117559350|gb|ABK36298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 368

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 199/377 (52%), Gaps = 27/377 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA
Sbjct: 3   DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     +
Sbjct: 60  KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA  +ATGHY+R      DD   R  + R +D  +DQSYFL+  ++ Q+    FP+GD+
Sbjct: 120 LGATYIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEAQVGQSLFPVGDL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + +     A  G I  ++G+++G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI 308
           H G++ +T+GQR+GLG+        E  +VV  +   + ++V  G    L    +   ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           +W+        +    +C VK R  Q+ +P  +Q  DD  + V F++ +  V  GQ+ VF
Sbjct: 293 HWVD----RTPIRAPRRCTVKTRYRQEDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVF 348

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LGGGII 
Sbjct: 349 YDGEV----CLGGGIIE 361


>gi|26990719|ref|NP_746144.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida KT2440]
 gi|37999625|sp|Q88FR9|MNMA_PSEPK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24985713|gb|AAN69608.1|AE016594_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida KT2440]
          Length = 374

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   Q++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGALTELLKGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   E
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+        +    +   K+R  Q      ++R   G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNPVD----LGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370


>gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 200]
 gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 200]
          Length = 376

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKAKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSAKKLDYL 375


>gi|157150902|ref|YP_001449344.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189040513|sp|A8AU84|MNMA_STRGC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157075696|gb|ABV10379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 373

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRSIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYV 373


>gi|330965599|gb|EGH65859.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 366

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCTLEKTTDGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|319892675|ref|YP_004149550.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus pseudintermedius ED99]
          Length = 370

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 200/379 (52%), Gaps = 22/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             ++ RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   TNQNTRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +  +DG     M R +D  +DQ+YFL   T+ QL  + FP+GD+ 
Sbjct: 119 GADYVATGHYARVRHH--EDGSVE--MLRGVDNNKDQTYFLNQLTEAQLSKVMFPIGDID 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG++ G+H
Sbjct: 175 KQKVREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQPGEMRTLNGELKGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
            G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   +++++ 
Sbjct: 233 GGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDVSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  + +  KC  K R  Q  V V V    DD V V F++    +  GQA VFY  D
Sbjct: 293 ----ATDLTEPLKCTAKFRYRQKDVGVTVTAHGDDAVKVTFDEPVRAITPGQAVVFYDGD 348

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    + D
Sbjct: 349 V----CLGGATIDDVYKKD 363


>gi|257870651|ref|ZP_05650304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus gallinarum EG2]
 gi|257804815|gb|EEV33637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus gallinarum EG2]
          Length = 372

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 201/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + ++ RVVV MSGGVDSSV A LLK  GYDV+G+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 119 GADYVATGHYAQ----VETDENGVTHMLRGVDSNKDQTYFLSQLSQAQLSKTMFPLGGME 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  +   +       A +G++V L+G++ G+H
Sbjct: 175 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+       EP FVV  D  ++ + VG      +L   R+   +I+
Sbjct: 233 DGLMYYTIGQRQGLGIGGGGTSQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIH 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           +  D          FKC  K R  Q  V V V+  D D   V F++    +  GQA VFY
Sbjct: 293 FTTDTDRPS----EFKCTAKFRYRQQDVGVSVRLLDNDRAEVIFDEPVRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + +     + +
Sbjct: 349 DG----MECLGGGLIDAAYQEAKELQYV 372


>gi|325273429|ref|ZP_08139681.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
 gi|324101442|gb|EGB99036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
          Length = 374

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 195/382 (51%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGAVTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   E
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALLASE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+             +   K+R  Q      +   D G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNSVDLSSP----RQLTAKVRYRQSDQRCTLALTDGGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370


>gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus W]
 gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus W]
          Length = 372

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A++ GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKKAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371


>gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus R309803]
 gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus R309803]
          Length = 372

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q    V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNKAKE----AEFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGNKLDYL 371


>gi|307131188|ref|YP_003883204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii 3937]
 gi|306528717|gb|ADM98647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii 3937]
          Length = 370

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 203/386 (52%), Gaps = 29/386 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYRVEGLFMKNWEEDDDTE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + QQL    FP+G++
Sbjct: 120 LGADYIATGHYVRRK-----DVDGKSRLLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K  VR++A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+++G
Sbjct: 175 EKPQVREIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H G++ +T+GQR+GLG+        +P +VV  D  ++ + V        L    +  +
Sbjct: 233 EHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVANNVLYVAQGHEHPRLMSVGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365
           +++W+      + +    +C VK R  Q  +P  +   D D + V F++    V  GQ+ 
Sbjct: 293 QLHWVD----REPLTQPLRCAVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDA 391
           VFY  ++     LGGGII    R+  
Sbjct: 349 VFYQGEA----CLGGGIIEERLRAAQ 370


>gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus MM3]
 gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus MM3]
          Length = 376

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    I 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  D + V +  ++    +  GQA VFY
Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDGNTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|28870522|ref|NP_793141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|37999578|sp|Q87ZR6|MNMA_PSESM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28853770|gb|AAO56836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 376

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 200/388 (51%), Gaps = 26/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ 
Sbjct: 6   PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++G
Sbjct: 178 LEKPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   
Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             K   K+R  Q   P  +++   G    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394
           FY  +      LGGG+I  ++   + ++
Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375


>gi|146293329|ref|YP_001183753.1| tRNA-specific 2-thiouridylase MnmA [Shewanella putrefaciens CN-32]
 gi|166235082|sp|A4Y7M1|MNMA_SHEPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145565019|gb|ABP75954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella putrefaciens CN-32]
          Length = 372

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 201/385 (52%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + ++      A  G+I    G++
Sbjct: 177 GELEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLRTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|323350805|ref|ZP_08086464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis VMC66]
 gi|322122979|gb|EFX94682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis VMC66]
          Length = 373

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + N V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQIKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYV 373


>gi|269967776|ref|ZP_06181823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 40B]
 gi|269827596|gb|EEZ81883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 40B]
          Length = 430

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 59  DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 115

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 116 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 175

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 176 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDL 232

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 233 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 290

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D   + +  + G     L+   +  
Sbjct: 291 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 350

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q+ +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 351 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 406

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 407 AVFYKGDV----CLGGGIIE 422


>gi|311029205|ref|ZP_07707295.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           sp. m3-13]
          Length = 368

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 203/380 (53%), Gaps = 22/380 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MKKRPEDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDESGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  +V + I + +Y  ++E+++ + V   F   Y +G TP P V CN+ +KF   L+  
Sbjct: 58  EDVIKVSNQIGIPYYAVNFEKQYWDKVFTYFLEEYKSGRTPNPDVMCNKEIKFKAFLNHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +ATGHY R      ++   +  + R  D  +DQSYFL A +Q+QL    FPLG
Sbjct: 118 MSIGADYIATGHYARV-----EEKDGQYRLLRGADHNKDQSYFLNALSQKQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K+ VR++A E GL  A K DS  ICF+ +  + + +       A  G++  ++G++ 
Sbjct: 173 HLSKKEVREIAIEAGLATAKKKDSTGICFIGERNFKEFLSGFLP--AQPGEMQTVDGEMK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G H+G++ YTIGQR+GLG+   GEP FV+  D   + +IVG     E L    +    +N
Sbjct: 231 GHHDGLMYYTIGQRQGLGIGGSGEPWFVIGKDLKRNVLIVGQGFHNEGLYSEGLEAIGMN 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   L        F C  K+R  Q+   V V   +DG   + F K +  +  GQA V Y
Sbjct: 291 WIKRDL---TFKQEFSCTAKMRYRQEDQEVTVYPQEDGTAKIYFHKRQRAITPGQAVVLY 347

Query: 369 TSDSNEARVLGGGIISGSKR 388
             D      +GGG I    +
Sbjct: 348 DGDI----CIGGGTIDRVIK 363


>gi|302185016|ref|ZP_07261689.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae 642]
 gi|330981378|gb|EGH79481.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 366

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|261210711|ref|ZP_05925003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC341]
 gi|260840196|gb|EEX66776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC341]
          Length = 371

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLDIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R           +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDNNKDQSYFLYTLSHEQVARSLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GL +        +P +V   D   + +I         L+ H +   +
Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGAEHPLLKSHGLVAAQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +    V   DD + V F++ +V V  GQ+ V
Sbjct: 299 LHWVD----RTPITEPVRCSVKTRYRQSDIACTVVPVGDDRIKVMFDEPQVAVTPGQSAV 354

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 355 FYQGEI----CLGGGIIE 368


>gi|168492409|ref|ZP_02716552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183573402|gb|EDT93930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 373

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    +   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|221310688|ref|ZP_03592535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315011|ref|ZP_03596816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319932|ref|ZP_03601226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324213|ref|ZP_03605507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|255767628|ref|NP_390627.3| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|254763446|sp|O35020|MNMA_BACSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225185256|emb|CAB14691.3| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 371

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 201/383 (52%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D    +  M R +D  +DQ+YFL   T+  L  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +    +   C  K R  Q+   V V+   +G   V F++    V  GQA VFY
Sbjct: 291 WVRSDIMKG---EEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366


>gi|205822400|sp|Q030C8|MNMA_LACLS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 376

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 194/390 (49%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 4   KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V D I V +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L    +
Sbjct: 61  VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + R     D      M R  D  +DQ+YFL   TQ+QL    FPLG +
Sbjct: 121 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ +  +   +       A  G ++ L+G  +G 
Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234

Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           H G++ YTIGQR GLG+         +P FVV  D  ++ + VG     E L    +   
Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++++  +            C  K R  Q+   V +    D V VDF++    +  GQA V
Sbjct: 295 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LGG +I  + +   V +  
Sbjct: 351 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 376


>gi|169834334|ref|YP_001693654.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|205828976|sp|B1I833|MNMA_STRPI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168996836|gb|ACA37448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 373

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + +++       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNLLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|81241404|gb|ABB62114.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 383

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAKSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSIGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1293]
 gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1293]
          Length = 376

 Score =  498 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLVTAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|170722583|ref|YP_001750271.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida W619]
 gi|205816891|sp|B1JBJ1|MNMA_PSEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169760586|gb|ACA73902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida W619]
          Length = 374

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 194/382 (50%), Gaps = 26/382 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+P   RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ D
Sbjct: 7   KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD++ATGHY+R R     D      + + +D  +DQSYFL A   +++    FP+G++
Sbjct: 124 LGADLIATGHYVRRR-----DTGAVTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++GR
Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +TIGQR+GLG+        EP +V++ D   + ++VG       L    +   E
Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALLASE 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           I W+                 K+R  Q      +   + G    F++ +  V  GQ+ VF
Sbjct: 297 IFWVNPIDLSSPRT----LTAKVRYRQSDQRCTLALTESGYRAVFDEPQRAVTPGQSVVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y  +      LGGG+I  ++  
Sbjct: 353 YDGEV----CLGGGVIETAEPW 370


>gi|238796003|ref|ZP_04639515.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
 gi|238720208|gb|EEQ12012.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
          Length = 373

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        +   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ V
Sbjct: 293 LHWVD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|296333160|ref|ZP_06875613.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675334|ref|YP_003867006.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149358|gb|EFG90254.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413578|gb|ADM38697.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 371

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 201/383 (52%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D    +  M R +D  +DQ+YFL   T+  L  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEADLATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +        C  K R  Q+   V V+   +G   V F++    V  GQA VFY
Sbjct: 291 WVRSDIMKG---QEIACTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    + + 
Sbjct: 348 DGE----ECLGGGTIDDVYKDET 366


>gi|145298399|ref|YP_001141240.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166234842|sp|A4SKS0|MNMA_AERS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|142851171|gb|ABO89492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 368

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 27/377 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA
Sbjct: 3   DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSASQDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     +
Sbjct: 60  KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA  +ATGHY+R      DD      + R +D  +DQSYFL+  +++Q+    FP+GD+
Sbjct: 120 LGATYIATGHYVRR-----DDSTGHPRLLRGLDSNKDQSYFLYTLSEKQVGQSLFPVGDL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + +     A  G I  ++G+++G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI 308
           H G++ +T+GQR+GLG+        E  +VV  +   + ++V  G    L    +   ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           +W+        +    +C VK R  Q  +P  +Q  DD  + V F++ +  V  GQ+ VF
Sbjct: 293 HWVD----RTPIRAPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVF 348

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LGGGII 
Sbjct: 349 YDGEV----CLGGGIIE 361


>gi|237809068|ref|YP_002893508.1| tRNA-specific 2-thiouridylase MnmA [Tolumonas auensis DSM 9187]
 gi|259495840|sp|C4L952|MNMA_TOLAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|237501329|gb|ACQ93922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tolumonas auensis DSM 9187]
          Length = 369

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +    + +    C A  D+ DA
Sbjct: 3   NNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSDE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIKLHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R      DD      + R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LGADYIATGHYVRR-----DDSTGHPRLLRGLDNNKDQSYFLYTLSSEQIAQSLFPVGDL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I  ++G+++G 
Sbjct: 175 EKPQVRAIAEQLGLATAKKKDSTGICFIGERKFTEFLGRYLP--AQPGVIETVDGKVIGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+         P +VV  D   + +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKDGDENPWYVVDKDVARNVLIVAQGHDHPRLFSDGLIAKQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+   +      + F C VK R  Q  +P  V+  +DD + V F   +  V  GQ+ V
Sbjct: 293 LDWVDRQVRR----EPFDCVVKTRYRQQDIPCHVEPLDDDTIKVTFASPQAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYLGE----ECLGGGIIE 362


>gi|146282652|ref|YP_001172805.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri A1501]
 gi|166235074|sp|A4VLW2|MNMA_PSEU5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145570857|gb|ABP79963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas stutzeri A1501]
          Length = 375

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 197/381 (51%), Gaps = 26/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P+  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 8   APEKTRVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 65  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +QL    FP+G+++
Sbjct: 125 GADLIATGHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELE 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G+I  ++G+++GRH
Sbjct: 180 KPEVRAIAEKHSLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIEAVDGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+        EP +V+  D   + +IVG       L    +   EI
Sbjct: 238 HGLMYHTIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+             K   K+R  Q      +++  DG    FE  +  V  GQ+ VFY
Sbjct: 298 YWVNPVDLS----APLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVVFY 353

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             +      LGGG+I  ++  
Sbjct: 354 DGEV----CLGGGVIEQAEPW 370


>gi|312961679|ref|ZP_07776177.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6]
 gi|311283938|gb|EFQ62521.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6]
          Length = 374

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 197/383 (51%), Gaps = 26/383 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             + +  RV+V MSGGVDSSV A LL   GY+V G+ ++ +     ++    C A  D+ 
Sbjct: 6   PSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  G+I    G+++G
Sbjct: 178 LEKPEVRRIAEQHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        EP +V+  D  ++ ++VG       L    +   
Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLENNVLVVGQGNEHPLLFSGALLAS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             +   K+R  Q   P  +++   G    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSVP----RRLTAKVRYRQSDQPCTLEKTASGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  +      LGGG+I  ++  
Sbjct: 352 FYDGEI----CLGGGVIEVAEPW 370


>gi|22538278|ref|NP_689129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 2603V/R]
 gi|25012138|ref|NP_736533.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae
           NEM316]
 gi|76798859|ref|ZP_00781068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 18RS21]
 gi|77406508|ref|ZP_00783561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae H36B]
 gi|77408912|ref|ZP_00785637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae COH1]
 gi|54039756|sp|P66979|MNMA_STRA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54042260|sp|P66978|MNMA_STRA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22535193|gb|AAN01002.1|AE014289_2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 2603V/R]
 gi|24413682|emb|CAD47762.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585782|gb|EAO62331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 18RS21]
 gi|77172503|gb|EAO75647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae COH1]
 gi|77174880|gb|EAO77696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae H36B]
          Length = 373

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 200/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    +   V F+  +  +  GQA VFY
Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
               NE   LGGG+I  + R D + + +
Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373


>gi|78043170|ref|YP_361010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575599|sp|Q3AA24|MNMA_CARHZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77995285|gb|ABB14184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 365

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/368 (39%), Positives = 208/368 (56%), Gaps = 14/368 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78
            +V+VAMSGGVDSSV AALL   GY+V+GVT+Q+++ +     +    CC+   V DARR
Sbjct: 7   KKVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVGCCSIYAVNDARR 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + + +YV ++ E F   VI  F   Y  G TP PC+ CNR +KF  LL     LG 
Sbjct: 67  VADRLGIPYYVLNFRELFERKVIDYFTEEYLRGRTPNPCIACNRYIKFDALLKKALSLGM 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R    V  D   +  + R +D ++DQ+Y L+  TQ  L  L  PLG+  KE
Sbjct: 127 DYMATGHYAR---VVYKDDIGKYGLFRGVDRKKDQTYVLYNLTQDMLRRLLLPLGEYTKE 183

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+LAR+  L  ADK +SQ+ICFV    Y   +K         G+ V +NG++LG+H G
Sbjct: 184 QVRELARKYNLVTADKPESQEICFVPDNDYRKFLKERRGEEIKPGNFVDVNGRVLGQHQG 243

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQR+GLG+A+G+P +VV +   ++ V++G    +    +   ++N+L    + D
Sbjct: 244 YPYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIGEASEIFSPGLIASDLNFL----WFD 299

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + + F+   +IR +  P P  V+R   D V V F + +  +  GQA VFY  D     +
Sbjct: 300 EIPERFEAQAQIRYNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFYRGD----EL 355

Query: 378 LGGGIISG 385
           LGGG I  
Sbjct: 356 LGGGTIEK 363


>gi|330889667|gb|EGH22328.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 366

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|304394517|ref|ZP_07376438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ahrensia sp. R2A130]
 gi|303293427|gb|EFL87806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ahrensia sp. R2A130]
          Length = 406

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/397 (54%), Positives = 287/397 (72%), Gaps = 4/397 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL  DK P D RVVVAMSGGVDSSVVA LLK  GY+V+G+TLQLY+   A ++KG+CC
Sbjct: 3   LNSLGFDKAPADTRVVVAMSGGVDSSVVACLLKEQGYEVLGMTLQLYDHGAAVQKKGACC 62

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARRV + +   HYV DYE++FR  VI PFA +Y  GETP+PCV CN+TVKFSD
Sbjct: 63  AGQDIHDARRVSEQMGFPHYVLDYEQKFREQVIDPFAKAYINGETPIPCVACNQTVKFSD 122

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGK-RRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           LL+  R+LGAD LATGHYI S+   GDDG  + R + RP D ++DQSYFLFATTQ+QL  
Sbjct: 123 LLTTARELGADCLATGHYIISKP--GDDGPLKNRQLFRPADADKDQSYFLFATTQEQLDF 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLGD+ K   R++A+EM L +A+KSDSQDICFV QGKY D++ +I     + GDIVH
Sbjct: 181 LRFPLGDVPKSRTREMAQEMDLIVAEKSDSQDICFVPQGKYADIIAKIRPDAGVAGDIVH 240

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           L+G++LGRH+GI N+TIGQRRG+G+A G+P++V+ +D  ++ V VGPRE+L   RI LR+
Sbjct: 241 LDGRVLGRHDGIFNFTIGQRRGIGIATGDPVYVISIDAKTATVTVGPREALATRRIALRD 300

Query: 308 INWLGDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +NWLGD   EDAV  +G    V++RS++ P P  +   D   ++     E G++ GQACV
Sbjct: 301 VNWLGDETLEDAVSEEGIDLHVRVRSTRPPRPARLTLEDGTAFITLTDGEDGISPGQACV 360

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           FY  ++ + RVLGGG I+ +  +    ++ ++    +
Sbjct: 361 FYVDENPQTRVLGGGWIAKTWSAAGAVDAAVTAPPSQ 397


>gi|152969695|ref|YP_001334804.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954544|gb|ABR76574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 388

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++   A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 6   VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 66  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     
Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V
Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|321312277|ref|YP_004204564.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5]
 gi|291485158|dbj|BAI86233.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320018551|gb|ADV93537.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5]
          Length = 371

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 201/383 (52%), Gaps = 22/383 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++   V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D    +  M R +D  +DQ+YFL   T+  L  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRSGEKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+E  L  A K DS  ICF+ +  +   + +     A  GD++ ++G++ 
Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           GRH+G++ YTIGQR GLG+   GEP F V  D   + + V        L   +I    I+
Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +    +   C  K R  Q+   V V+   +G   V F++    V  GQA VFY
Sbjct: 291 WVRSDIMKG---EEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      LGGG I    +   
Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366


>gi|262043152|ref|ZP_06016290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259039540|gb|EEW40673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 388

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++   A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 6   VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 66  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     
Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V
Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|253688256|ref|YP_003017446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259495833|sp|C6DFW7|MNMA_PECCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|251754834|gb|ACT12910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 368

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 195/379 (51%), Gaps = 29/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R MD  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++    +G
Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +H G++ +T+GQR+GLG+        +P +VV  D  ++ + V        L  H +  +
Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSHGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           +++W+        +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ 
Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  D      LGGGII 
Sbjct: 349 VFYLDDV----CLGGGIIE 363


>gi|116492933|ref|YP_804668.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Pediococcus pentosaceus ATCC 25745]
 gi|122265603|sp|Q03EZ6|MNMA_PEDPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116103083|gb|ABJ68226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 377

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 197/384 (51%), Gaps = 24/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVVAYLLKQQGYDVVGVFMKNWDD---TDENGYCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L
Sbjct: 60  AKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D    + + R  D  +DQ+YFL   + +QL  + FPLG M 
Sbjct: 120 GADYVATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMI 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL + DK DS  ICF+ +  + + +       A  G ++ L+G++ G H
Sbjct: 176 KPEVRKVAEEAGLSVYDKKDSVGICFIGEKNFREFLGNYLP--AKAGKMMTLDGEVKGEH 233

Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
            G++ YTIGQRRGLG+  G    EP FVV  D + + + VG       L    +   +++
Sbjct: 234 AGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFENSHLYAASLDASDMH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367
           ++      +     F+C  K R     VPV V  ++D   V VDF+     +  GQA V 
Sbjct: 294 FVN--KLGEERGRDFRCTAKFRYRAQDVPVTVHFSEDFSKVTVDFDDPARAITPGQALVL 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      +GGGII  +  S+ 
Sbjct: 352 YDGE----ECIGGGIIDAAYNSEK 371


>gi|319426629|gb|ADV54703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella putrefaciens 200]
          Length = 372

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB108]
 gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB108]
          Length = 372

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 2   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 59  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVSVQIVDENTVRILCDEPIRAITPGQAVVFY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371


>gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
 gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
          Length = 365

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 201/378 (53%), Gaps = 22/378 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +  +  +   G C + +D  D   
Sbjct: 2   RNKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDDN---GVCMSEEDYKDVVA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L    ++GA
Sbjct: 59  VAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDYAMKIGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R  ++   DGK + +M R +D  +DQ+YFL    Q+QL  + FP+G+  K 
Sbjct: 119 DHVATGHYARI-IHEEKDGKIKSVMLRGIDDNKDQTYFLCQLNQKQLEKVLFPIGEYTKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A +  L  A K DS  ICF+ +  + + + +     A  G+IV   G  LG+HNG
Sbjct: 178 QIREIAEKYNLKTAKKKDSTGICFIGERDFNEFLSKYLP--AKTGNIVDTKGNTLGKHNG 235

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREINWL 311
           ++ YTIGQR+G+G+       GEP FVV  + +++ +IV  G    L    +   + N++
Sbjct: 236 LMYYTIGQRKGIGIGNTKEGTGEPWFVVDKNLDTNELIVTQGDNSVLYSKGLIATDFNFI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +D +    +C VK R  Q      + + ND+   + F++ +  +  GQ  V Y  
Sbjct: 296 N----KDELQFPLECTVKFRYRQKDAGAVINKLNDNEYEIIFDEPQKAITLGQIAVVYKG 351

Query: 371 DSNEARVLGGGIISGSKR 388
           +      LGGG+I    +
Sbjct: 352 E----ECLGGGVIDKVIK 365


>gi|332162070|ref|YP_004298647.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666300|gb|ADZ42944.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860067|emb|CBX70393.1| tRNA-specific 2-thiouridylase mnmA [Yersinia enterocolitica W22703]
          Length = 373

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+      + V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|300716270|ref|YP_003741073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia billingiae Eb661]
 gi|299062106|emb|CAX59222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia billingiae Eb661]
          Length = 367

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 195/377 (51%), Gaps = 28/377 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ 
Sbjct: 4   SQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADAQA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137
           VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LG
Sbjct: 61  VCDKLGIYLHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R +     D   +  + R +D  +DQSYFL+    +Q+    FP+G++ K
Sbjct: 121 ADFIATGHYVRRQ-----DVDGKSRLLRGLDDNKDQSYFLYTLGHEQIAQSLFPVGELAK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I++  G+++G H 
Sbjct: 176 PDVRRIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPILNAEGEVVGEHQ 233

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++
Sbjct: 234 GLMYHTLGQRKGLGIGGTKAGSEEPWYVVDKDVANNILVVAQGHEHPRLMSVGLVAQQLH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  +P  V    +D + V F++    V  GQ+ VFY
Sbjct: 294 WVD----REILTAPLRCTVKTRYRQADIPCTVTPLGEDRIEVRFDEPVAAVTPGQSAVFY 349

Query: 369 TSDSNEARVLGGGIISG 385
             +      LGGGII  
Sbjct: 350 LDEI----CLGGGIIEA 362


>gi|15900060|ref|NP_344664.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae TIGR4]
 gi|111656982|ref|ZP_01407790.1| hypothetical protein SpneT_02001784 [Streptococcus pneumoniae
           TIGR4]
 gi|225860166|ref|YP_002741675.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229174|ref|ZP_06962855.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255779|ref|ZP_06979365.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501928|ref|YP_003723868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|24638327|sp|Q97T38|MNMA_STRPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811468|sp|C1CP03|MNMA_STRZT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14971585|gb|AAK74304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TIGR4]
 gi|225726555|gb|ACO22406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237523|gb|ADI68654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390539|gb|EGE88879.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA04375]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    +   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|77412483|ref|ZP_00788784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae CJB111]
 gi|77161459|gb|EAO72469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae CJB111]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 201/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    +   V F+  +  +  GQA VFY
Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
               NE   LGGG+I  + R D + + +
Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373


>gi|227111563|ref|ZP_03825219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
 gi|227327064|ref|ZP_03831088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 368

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 195/379 (51%), Gaps = 29/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R MD  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++    +G
Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +H G++ +T+GQR+GLG+        +P +VV  D  ++ + V        L  + +  +
Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           +++W+        +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ 
Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  D      LGGGII 
Sbjct: 349 VFYLDDV----CLGGGIIE 363


>gi|12514787|gb|AAG55959.1|AE005329_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361069|dbj|BAB35028.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209772838|gb|ACI84731.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772840|gb|ACI84732.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772842|gb|ACI84733.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772844|gb|ACI84734.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772846|gb|ACI84735.1| hypothetical protein ECs1605 [Escherichia coli]
          Length = 383

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|222151508|ref|YP_002560664.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Macrococcus caseolyticus JCSC5402]
 gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Macrococcus caseolyticus JCSC5402]
          Length = 371

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 201/387 (51%), Gaps = 23/387 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +VVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   DNSKTKVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYEDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            RVC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IRVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHAVKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + R    +DG     M R +D  +DQ+YFL   TQ+QL  + FPLG ++
Sbjct: 119 GADYVATGHYAQIRR--SEDG---VEMLRGVDNNKDQTYFLNQLTQEQLSRVMFPLGHLQ 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A +  L  A K DS  ICF+ +  + + +       A  G++  L+G+ +G H
Sbjct: 174 KPEVREIALKHDLATAKKKDSTGICFIGERNFKEFLSGYLP--AQNGEMQTLDGKPMGTH 231

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   +++++ 
Sbjct: 232 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFDHDALYSDYLIASDVSFVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C  K R  Q    V V++ DD  + V + +    +  GQA VFY  +
Sbjct: 292 PVD----LTTPLECTAKFRYRQRDTKVTVEKIDDNTIKVTYAEPVRAITPGQAVVFYNGE 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LGG  I    ++    E ++ 
Sbjct: 348 V----CLGGATIDDVYKTSGQLEYVVQ 370


>gi|152989329|ref|YP_001347945.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PA7]
 gi|205816889|sp|A6V4G0|MNMA_PSEA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150964487|gb|ABR86512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa PA7]
          Length = 375

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 26/384 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
              P+  RV+V MSGGVDSSV A LL++ GY V G+ ++ ++    ++    C A +D+ 
Sbjct: 5   APTPRRERVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 122 MLGADLIATGHYVRRR-----DLDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++G
Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIG 234

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D   + ++VG       L    +   
Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            I W+     E       +   K+R  Q      +++  DG    F++ +  V  GQ+ V
Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTADGYRAVFDEPQRAVTPGQSVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  +      LGGG+I  ++  D
Sbjct: 351 FYDGEV----CLGGGVIETAEAWD 370


>gi|330900616|gb|EGH32035.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 366

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RRLTAKVRYRQGDQPCTLEKAADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|296875545|ref|ZP_06899617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433469|gb|EFH19244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     E+L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQSSQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYV 373


>gi|288936092|ref|YP_003440151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella variicola At-22]
 gi|290510856|ref|ZP_06550226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. 1_1_55]
 gi|288890801|gb|ADC59119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella variicola At-22]
 gi|289777572|gb|EFD85570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. 1_1_55]
          Length = 388

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++   A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 6   VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 66  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     
Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V
Sbjct: 296 GHDHPRLMSVGLIAQQLHWVD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|157146082|ref|YP_001453401.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter koseri ATCC
           BAA-895]
 gi|157083287|gb|ABV12965.1| hypothetical protein CKO_01838 [Citrobacter koseri ATCC BAA-895]
          Length = 383

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N + +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G+H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V  
Sbjct: 231 AQPGKIITVDGDEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+    F        +C VK R  Q  +P  V+  +D+ + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFS----GTLRCTVKTRYRQTDIPCTVKALDDERIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|126698878|ref|YP_001087775.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile 630]
 gi|123174593|sp|Q18BE2|MNMA_CLOD6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115250315|emb|CAJ68137.1| transfer RNA-specific 2-thiouridylase MnmA [Clostridium difficile]
          Length = 361

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV
Sbjct: 4   NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D
Sbjct: 64  ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ 
Sbjct: 124 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI
Sbjct: 181 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E L    +  +++N++      D 
Sbjct: 241 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISI----DT 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S  P P  + R  +D + + F++++  +  GQ+ V Y  D     V+
Sbjct: 297 LEEPLRVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VV 352

Query: 379 GGGIISGS 386
           GGGII  S
Sbjct: 353 GGGIIEKS 360


>gi|327463811|gb|EGF10127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1057]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KTEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I    ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRVYKNGQVLQYI 373


>gi|37526694|ref|NP_930038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81571961|sp|Q7MB22|MNMA_PHOLL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|36786126|emb|CAE15178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 367

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QSVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +ATGHY+R R     D   +  + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 120 LNADYIATGHYVRRR-----DINGKSQLLRGLDNNKDQSYFLYTLSHQQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ LG 
Sbjct: 175 EKPEVRRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIMTVDGESLGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +V+  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEEPWYVIDKDVQNNILIVAQGHEHPRLMSTGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           + W+        + +   C VK R  Q  +P  V   ++D + V F      V  GQ+ V
Sbjct: 293 LYWVD----RQTLTEKIHCVVKTRYRQQDIPCSVTPISEDKIEVHFANPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 349 FYQGEV----CLGGGVIE 362


>gi|120598593|ref|YP_963167.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. W3-18-1]
 gi|166235084|sp|A1RIW8|MNMA_SHESW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120558686|gb|ABM24613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. W3-18-1]
          Length = 372

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 201/385 (52%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L  + + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSNGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SVVFYDGEV----CLGGGIIDQLIR 371


>gi|325698055|gb|EGD39936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK160]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I +S+Y  ++E+ +   V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGISYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E  +    +C  K R  Q    V V    D   V+F++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEEFTI----ECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|311694977|gb|ADP97850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine bacterium HP15]
          Length = 395

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/384 (34%), Positives = 197/384 (51%), Gaps = 23/384 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             +  + RV+V MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+ 
Sbjct: 10  PNSNANTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDLA 66

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ V D I +  +   +   + + V   F S Y AG TP P + CN+ VKF   L    
Sbjct: 67  DAQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYQAGRTPNPDILCNKEVKFRAFLDYAI 126

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY R R   G  GK +  + + +D  +DQSYFL A +  ++    FP+G+
Sbjct: 127 TLGADYIATGHYARQRPIAGSTGKAQ--LLKGLDPNKDQSYFLHAVSGDRIARTLFPVGE 184

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + G    DK DS  ICF+ + K+ D +K+     A  GDI   +GQ +G
Sbjct: 185 LEKPEVRRIAEQQGFVTHDKKDSTGICFIGERKFKDFLKQYLP--AQPGDIETPDGQKIG 242

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           RH G++ +TIGQR+GLG+        EP +V   D + + ++         L    +   
Sbjct: 243 RHQGLMYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLVSG 302

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            I+W+      +A    F+C  K R  Q      V   D GV VDF+ ++  V  GQ+ V
Sbjct: 303 PIDWVAG----EAPAGHFRCKAKTRYRQPDQDCQVLLIDGGVRVDFDDAQRAVTPGQSVV 358

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  +      LGGG+I  + R D
Sbjct: 359 FYDGEV----CLGGGVIEQTWRDD 378


>gi|320156716|ref|YP_004189095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus MO6-24/O]
 gi|319932028|gb|ADV86892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus MO6-24/O]
          Length = 374

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 198/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +     S+    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNSE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G++LG+
Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRIYL 305
           H G++ +T+GQR+GL +          EP FV   D   + +  + G     L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q  +P  +   DD  + V F++ E+ V  GQ+
Sbjct: 295 SQLHWV----EREPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            VFY  D      LGGGII  
Sbjct: 351 AVFYQGDV----CLGGGIIEK 367


>gi|254974826|ref|ZP_05271298.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-66c26]
 gi|255092214|ref|ZP_05321692.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CIP 107932]
 gi|255100299|ref|ZP_05329276.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-63q42]
 gi|255306238|ref|ZP_05350410.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile ATCC 43255]
 gi|255313953|ref|ZP_05355536.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-76w55]
 gi|255516633|ref|ZP_05384309.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-97b34]
 gi|255649732|ref|ZP_05396634.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-37x79]
 gi|260682888|ref|YP_003214173.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CD196]
 gi|260686486|ref|YP_003217619.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile R20291]
 gi|260209051|emb|CBA62172.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CD196]
 gi|260212502|emb|CBE03431.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile R20291]
          Length = 359

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV
Sbjct: 2   NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D
Sbjct: 62  ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ 
Sbjct: 122 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI
Sbjct: 179 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E L    +  +++N++      D 
Sbjct: 239 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISI----DT 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S  P P  + R  +D + + F++++  +  GQ+ V Y  D     V+
Sbjct: 295 LEEPLRVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VV 350

Query: 379 GGGIISGS 386
           GGGII  S
Sbjct: 351 GGGIIEKS 358


>gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus bovis ATCC 700338]
 gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus bovis ATCC 700338]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 120 GADYVATGHYAQ----VSRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +   K R  Q    V +    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTIHVKGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + ++    + +
Sbjct: 350 DG----KECLGGGIIDMAYKNGVACQYI 373


>gi|322390500|ref|ZP_08064018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 903]
 gi|321142774|gb|EFX38234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 903]
          Length = 373

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     ESL    +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASMI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKYGKVCQYI 373


>gi|37679527|ref|NP_934136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus YJ016]
 gi|61217310|sp|Q7MLT4|MNMA_VIBVY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|37198271|dbj|BAC94107.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Vibrio vulnificus YJ016]
          Length = 374

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 198/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +     S+    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHKINFAAEYWDNVFEYFLSEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G++LG+
Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRIYL 305
           H G++ +T+GQR+GL +          EP FV   D   + +  + G     L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q  +P  +   DD  + V F++ E+ V  GQ+
Sbjct: 295 SQLHWV----EREPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            VFY  D      LGGGII  
Sbjct: 351 AVFYQGDV----CLGGGIIEK 367


>gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arsenophonus nasoniae]
          Length = 364

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 202/375 (53%), Gaps = 28/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 2   KKVIVGMSGGVDSSVSAYLLKQQGYQVAGLFMKNWEEDDNEE---YCAAATDLADAQSVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD
Sbjct: 59  DKLDIELHTVNFAAEYWDNVFAHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLAAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +   G     R  + R +D  +DQSYFL+   Q QL    FP+G+++K +
Sbjct: 119 YIATGHYARCKTVNG-----RHQLLRGLDNNKDQSYFLYTLDQAQLAQSLFPIGELEKST 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ILG H+G+
Sbjct: 174 VRRIAEEIGLITAKKKDSTGICFIGERKFRDFLARYLP--AKPGVIITVDGKILGEHSGL 231

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        +P +VV  D  ++R+IV        L    + +++I+W+
Sbjct: 232 MYHTLGQRKGLGIGGVKEANDDPWYVVDKDIKNNRLIVAQGHNHPRLMSTGLIVQQIHWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                  A+ +  +  VK R  Q  +P  + Q +D+ + V F+     V  GQ+ VFY  
Sbjct: 292 N----PPALNETNQYTVKTRYRQPDIPCTIKQLSDNKIIVQFDYPIAAVTPGQSAVFYQG 347

Query: 371 DSNEARVLGGGIISG 385
           +      LGGG+I  
Sbjct: 348 EI----CLGGGVIET 358


>gi|110808325|gb|ABG91067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Liberibacter asiaticus]
          Length = 357

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 53  QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE
Sbjct: 2   QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 61

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD
Sbjct: 62  TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 121

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV
Sbjct: 122 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 181

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
           KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV
Sbjct: 182 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 241

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352
           GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF
Sbjct: 242 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 301

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
           EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 302 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 357


>gi|288906423|ref|YP_003431645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus UCN34]
 gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus UCN34]
          Length = 373

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 120 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +   K R  Q    V V        V F++ +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGAKAEVVFDEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGGII  + ++    + +
Sbjct: 350 DGE----ECLGGGIIDMAYKNGVACQYI 373


>gi|293404489|ref|ZP_06648483.1| trmU [Escherichia coli FVEC1412]
 gi|298380264|ref|ZP_06989869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
 gi|300896838|ref|ZP_07115333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 198-1]
 gi|300938705|ref|ZP_07153429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 21-1]
 gi|301024581|ref|ZP_07188253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 69-1]
 gi|331646392|ref|ZP_08347495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M605]
 gi|281178243|dbj|BAI54573.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli SE15]
 gi|291429075|gb|EFF02100.1| trmU [Escherichia coli FVEC1412]
 gi|298279962|gb|EFI21470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
 gi|300359320|gb|EFJ75190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 198-1]
 gi|300396506|gb|EFJ80044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 69-1]
 gi|300456350|gb|EFK19843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 21-1]
 gi|331045144|gb|EGI17271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M605]
          Length = 383

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|300816836|ref|ZP_07097056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 107-1]
 gi|300821083|ref|ZP_07101232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 119-7]
 gi|300906948|ref|ZP_07124620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 84-1]
 gi|300917906|ref|ZP_07134539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 115-1]
 gi|300922663|ref|ZP_07138760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 182-1]
 gi|300928309|ref|ZP_07143845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 187-1]
 gi|300949484|ref|ZP_07163481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 116-1]
 gi|300955539|ref|ZP_07167901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 175-1]
 gi|301306077|ref|ZP_07212155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 124-1]
 gi|301328492|ref|ZP_07221558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 78-1]
 gi|301644551|ref|ZP_07244544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 146-1]
 gi|309796520|ref|ZP_07690927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 145-7]
 gi|331641677|ref|ZP_08342812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H736]
 gi|331652184|ref|ZP_08353203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M718]
 gi|331676926|ref|ZP_08377622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H591]
 gi|300317578|gb|EFJ67362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 175-1]
 gi|300401295|gb|EFJ84833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 84-1]
 gi|300414896|gb|EFJ98206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 115-1]
 gi|300421012|gb|EFK04323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 182-1]
 gi|300451104|gb|EFK14724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 116-1]
 gi|300463695|gb|EFK27188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 187-1]
 gi|300526382|gb|EFK47451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 119-7]
 gi|300530610|gb|EFK51672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 107-1]
 gi|300838649|gb|EFK66409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 124-1]
 gi|300845099|gb|EFK72859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 78-1]
 gi|301077133|gb|EFK91939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 146-1]
 gi|308119832|gb|EFO57094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 145-7]
 gi|315135765|dbj|BAJ42924.1| trmU [Escherichia coli DH1]
 gi|315254893|gb|EFU34861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 85-1]
 gi|324017533|gb|EGB86752.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 117-3]
 gi|331038475|gb|EGI10695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H736]
 gi|331050462|gb|EGI22520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M718]
 gi|331075615|gb|EGI46913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H591]
 gi|332102031|gb|EGJ05377.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 383

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|29376579|ref|NP_815733.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecalis V583]
 gi|227520188|ref|ZP_03950237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227555378|ref|ZP_03985425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HH22]
 gi|256762940|ref|ZP_05503520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T3]
 gi|256853584|ref|ZP_05558949.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8]
 gi|257079445|ref|ZP_05573806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis JH1]
 gi|257087270|ref|ZP_05581631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis D6]
 gi|257090346|ref|ZP_05584707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis CH188]
 gi|257419691|ref|ZP_05596685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T11]
 gi|257422150|ref|ZP_05599140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis X98]
 gi|294780347|ref|ZP_06745716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis PC1.1]
 gi|307270242|ref|ZP_07551555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4248]
 gi|307295656|ref|ZP_07575491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0411]
 gi|312900841|ref|ZP_07760135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0470]
 gi|312902847|ref|ZP_07762051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0635]
 gi|73920123|sp|Q820U1|MNMA_ENTFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29344043|gb|AAO81803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis V583]
 gi|227072360|gb|EEI10323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227175492|gb|EEI56464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HH22]
 gi|256684191|gb|EEU23886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T3]
 gi|256710527|gb|EEU25570.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8]
 gi|256987475|gb|EEU74777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis JH1]
 gi|256995300|gb|EEU82602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis D6]
 gi|256999158|gb|EEU85678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis CH188]
 gi|257161519|gb|EEU91479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T11]
 gi|257163974|gb|EEU93934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis X98]
 gi|294452611|gb|EFG21044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis PC1.1]
 gi|306496368|gb|EFM65945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0411]
 gi|306513458|gb|EFM82077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4248]
 gi|310633901|gb|EFQ17184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0635]
 gi|311291940|gb|EFQ70496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0470]
 gi|315025815|gb|EFT37747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2137]
 gi|315028590|gb|EFT40522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4000]
 gi|315031109|gb|EFT43041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0017]
 gi|315149261|gb|EFT93277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0012]
 gi|315157187|gb|EFU01204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0043]
 gi|315171619|gb|EFU15636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1342]
 gi|315173202|gb|EFU17219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1346]
 gi|315575062|gb|EFU87253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0309B]
 gi|315576621|gb|EFU88812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0630]
 gi|315582488|gb|EFU94679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0309A]
 gi|327535526|gb|AEA94360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis OG1RF]
          Length = 374

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL F2-208]
          Length = 371

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP   V  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWXXVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           +  +      +    +C  K R  Q    V V   +DG   V F      +  GQA VFY
Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D       GGG I    ++ A  + +
Sbjct: 347 DGDI----CFGGGTIDTVWKNGAKLDYV 370


>gi|262394626|ref|YP_003286480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
 gi|262338220|gb|ACY52015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
          Length = 374

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 197/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       D   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LDADYIAMGHYVRRSF---PDNGEKPAMLRGLDGNKDQSYFLYTLSHEQIGRSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGEVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          EP FV   D   + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q+ +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 351 AVFYKDDV----CLGGGIIE 366


>gi|73855169|gb|AAZ87876.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 383

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R   G 
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPG- 231

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
              G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V  
Sbjct: 232 -QPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|90021322|ref|YP_527149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharophagus degradans 2-40]
 gi|123090544|sp|Q21K42|MNMA_SACD2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89950922|gb|ABD80937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharophagus degradans 2-40]
          Length = 380

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 197/382 (51%), Gaps = 23/382 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +   ++ V+V MSGGVDSSV A LLK+ GY V G+ ++ ++    ++    C A  D+ 
Sbjct: 13  PRPANEITVIVGMSGGVDSSVSALLLKQQGYKVEGLFMKNWDEDDGTE---YCTAMTDLM 69

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA  VC  +++  +  ++  ++ + V   F   Y A  TP P + CNR +KF   L   +
Sbjct: 70  DAAAVCQKLDIHLHTANFARQYWDNVFEYFLEEYKACRTPNPDILCNREIKFKVFLEYAK 129

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LGAD +ATGHY R+  + G        + + +D  +DQSYFL A  +Q+     FP+GD
Sbjct: 130 KLGADYIATGHYTRTSQHEG-----CTQLRKGLDPNKDQSYFLHAVGEQEFAQTLFPIGD 184

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL   +K DS  ICF+ + ++ D ++      A  G IV  NG  +G
Sbjct: 185 IEKPQVRAIAEERGLVTHNKKDSTGICFIGERRFKDFLETYLP--AQPGVIVDENGVEIG 242

Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +H G++ +TIGQR+GLG+         P +V      +++++V        L  + +   
Sbjct: 243 KHQGLMYHTIGQRQGLGIGGVPGRPEAPWYVAEKRLQTNQLVVVQGSNHPLLFSNELTTG 302

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            ++W+   L    + + F+C  K R  Q      +  N DGV   F++ +  V  GQ+ V
Sbjct: 303 AMHWINPRLAP-TLSEPFRCTAKTRYRQPEQWCTLTANGDGVIAVFDEPQRAVTPGQSAV 361

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
           FY  D      LGG +I  +++
Sbjct: 362 FYQGDI----CLGGAVIETTRK 379


>gi|24051447|gb|AAN42769.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040928|gb|AAP16658.1| hypothetical protein S1235 [Shigella flexneri 2a str. 2457T]
 gi|281600566|gb|ADA73550.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Shigella flexneri 2002017]
          Length = 383

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIKV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|291085497|ref|ZP_06353231.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter youngae ATCC 29220]
 gi|291071151|gb|EFE09260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter youngae ATCC 29220]
          Length = 383

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N + +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MLEYAALKFNVVSIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G+H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V  
Sbjct: 231 AQPGKIITVDGEDIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  D + + V
Sbjct: 291 GHEHPRLMSVGLVAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDAERIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|76788488|ref|YP_330692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae A909]
 gi|123601021|sp|Q3JYG1|MNMA_STRA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76563545|gb|ABA46129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae A909]
          Length = 373

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 200/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    +   V F+  +  +  GQA VFY
Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVKVYVKGNQARVVFDDLQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
               NE   LGGG+I  + R D + + +
Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373


>gi|319940179|ref|ZP_08014532.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
           1_2_62CV]
 gi|319810650|gb|EFW06980.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
           1_2_62CV]
          Length = 373

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 197/386 (51%), Gaps = 25/386 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 62  VADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R++     D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K 
Sbjct: 122 DYVATGHYARAKR----DEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A + GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H G
Sbjct: 178 EVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGRDMGEHAG 235

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++
Sbjct: 236 LMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYNDNLMSTSLDASQVHF 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 E       +C  K R  Q    V V    D   V+F + +  +  GQA VFY  
Sbjct: 296 TRKMPAE----FTMECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVFYDG 351

Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396
           +      LGGG+I  + +   +++ +
Sbjct: 352 E----ECLGGGLIDNAYKDGKLQQYI 373


>gi|228477995|ref|ZP_04062606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus salivarius SK126]
 gi|228250175|gb|EEK09428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus salivarius SK126]
          Length = 373

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYV 373


>gi|126174691|ref|YP_001050840.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS155]
 gi|125997896|gb|ABN61971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS155]
          Length = 392

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 24  IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 81  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 140

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 141 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 196

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 197 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 254

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 255 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 314

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 315 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQ 370

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 371 SAVFYDGEV----CLGGGIIDQLIR 391


>gi|213970042|ref|ZP_03398174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato T1]
 gi|213925146|gb|EEB58709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato T1]
          Length = 376

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 200/388 (51%), Gaps = 26/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             N +  RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ 
Sbjct: 6   PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++G
Sbjct: 178 LEKPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   
Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           EI W+             K   K+R  Q   P  +++   G    F+  +  V  GQ+ V
Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394
           FY  +      LGGG+I  ++   + ++
Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375


>gi|237731114|ref|ZP_04561595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter sp. 30_2]
 gi|226906653|gb|EEH92571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter sp. 30_2]
          Length = 383

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N + +  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MLEYAALKFNVVSIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G+H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V  
Sbjct: 231 AQPGKIITVDGEEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  D + + V
Sbjct: 291 GHEHPRLMSVGLVAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDAERIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|205821998|sp|A9L4G9|MNMA_SHEB9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         +DG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|304409068|ref|ZP_07390689.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS183]
 gi|307303071|ref|ZP_07582826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica BA175]
 gi|304352889|gb|EFM17286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS183]
 gi|306913431|gb|EFN43853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica BA175]
          Length = 372

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         +DG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|318606118|emb|CBY27616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 373

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLTQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+      + V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|255975449|ref|ZP_05426035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T2]
 gi|256961498|ref|ZP_05565669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Merz96]
 gi|293385188|ref|ZP_06631008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis R712]
 gi|293388180|ref|ZP_06632702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis S613]
 gi|307277736|ref|ZP_07558822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0860]
 gi|312908274|ref|ZP_07767238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 512]
 gi|312910654|ref|ZP_07769495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 516]
 gi|255968321|gb|EET98943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T2]
 gi|256951994|gb|EEU68626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Merz96]
 gi|291077561|gb|EFE14925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis R712]
 gi|291082420|gb|EFE19383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis S613]
 gi|306505615|gb|EFM74799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0860]
 gi|310625688|gb|EFQ08971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 512]
 gi|311289030|gb|EFQ67586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 516]
          Length = 374

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQTQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|261821429|ref|YP_003259535.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium wasabiae WPP163]
 gi|261605442|gb|ACX87928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium wasabiae WPP163]
          Length = 368

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 194/379 (51%), Gaps = 29/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R MD  +DQSYFL+    +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLGHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++    +G
Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +H G++ +T+GQR+GLG+        +P +VV  D  ++ + V        L  + +  +
Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           +++W+        +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ 
Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  D      LGGGII 
Sbjct: 349 VFYLDDV----CLGGGIIE 363


>gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
 gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
          Length = 364

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 195/375 (52%), Gaps = 24/375 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +  +  +   G C A +D  D   
Sbjct: 3   RRKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIA 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L    ++GA
Sbjct: 60  VAEQLGIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKIGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R  ++   DG+ +  M R +D  +DQ+YFL    Q+QL  + FPLG+  K 
Sbjct: 120 DYVATGHYARI-IHEEKDGEMKSTMLRGIDDNKDQTYFLCQLNQEQLEKVLFPLGEYTKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A +  L  A K DS  ICF+ +  +   + +     A  G+IV+  G++LG HNG
Sbjct: 179 KIREIAEKYNLATAKKKDSTGICFIGERDFNKFLSQYLP--AKGGNIVNTQGKVLGHHNG 236

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREINWL 311
           ++ YTIGQR+G+G+       GEP FVV  D   + +IV  G    L    +   + N++
Sbjct: 237 LMYYTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLIATDFNFI 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            +  F        +C VK R  Q      + + N++   V F + +  V  GQ  V Y  
Sbjct: 297 NEVQF------PLECTVKFRYRQKDTKAVISKLNENEYEVIFNEPQKAVTLGQIVVAYDG 350

Query: 371 DSNEARVLGGGIISG 385
           +      LGGGII  
Sbjct: 351 EV----CLGGGIIDK 361


>gi|205821993|sp|A6WP69|MNMA_SHEB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BGSC 6E1]
 gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BGSC 6E1]
          Length = 376

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A+E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q+   V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I    RS    + L
Sbjct: 352 GGD----ECLGGATIDEVYRSGKKLDYL 375


>gi|331017263|gb|EGH97319.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 366

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++   G    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|39934381|ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           CGA009]
 gi|39648230|emb|CAE26749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris CGA009]
          Length = 401

 Score =  496 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 214/382 (56%), Positives = 278/382 (72%), Gaps = 4/382 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
               LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+  +A  RK
Sbjct: 2   TEPMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRK 61

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+V
Sbjct: 62  GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSV 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL+  R+LGA  LATGHY+ SR    DDG   R +    D +RDQSYFLFATT++Q
Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL--DDGS--RALVCAADRDRDQSYFLFATTREQ 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GD
Sbjct: 178 LQFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGD 237

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV ++G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI 
Sbjct: 238 IVDVDGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIV 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR+INW+GDG  +D + DG + FV++RS++ P P +++  + G  V+    E GV+ GQA
Sbjct: 298 LRDINWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
           CVFY +   +ARVLGGG I  +
Sbjct: 358 CVFYDAAEGQARVLGGGFIKSA 379


>gi|192289904|ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           TIE-1]
 gi|192283653|gb|ACF00034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris TIE-1]
          Length = 401

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 214/382 (56%), Positives = 278/382 (72%), Gaps = 4/382 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
               LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+  +A  RK
Sbjct: 2   TEPMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRK 61

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+V
Sbjct: 62  GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSV 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL+  R+LGA  LATGHY+ SR    DDG   R +    D +RDQSYFLFATT++Q
Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL--DDGS--RALVCAADRDRDQSYFLFATTREQ 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GD
Sbjct: 178 LQFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGD 237

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV ++G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI 
Sbjct: 238 IVDVDGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAARRQVVVGPREALLMDRIV 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR+INW+GDG  +D + DG + FV++RS++ P P +++  + G  V+    E GV+ GQA
Sbjct: 298 LRDINWIGDGALDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
           CVFY +   +ARVLGGG I  +
Sbjct: 358 CVFYDAAEGQARVLGGGFIKSA 379


>gi|295396917|ref|ZP_06807041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus viridans ATCC 11563]
 gi|294974851|gb|EFG50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus viridans ATCC 11563]
          Length = 378

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +   K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  
Sbjct: 4   NNPNKNTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGFCTATEDYK 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   V   I + +Y  ++E+ + + V   F   Y    TP P V CN+ +KF   L    
Sbjct: 61  DVAAVAAQIGIPYYSINFEKEYWDKVFTYFLDEYKRDRTPNPDVMCNKEIKFKAFLDYAL 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LGAD +ATGHY +    V  D K +  M R +D  +DQ+YFL   +Q QL  + FPLG 
Sbjct: 121 ELGADYVATGHYAQ----VERDAKGKVHMLRGLDNNKDQTYFLNQLSQDQLQRVMFPLGH 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL  A K DS  ICF+ +  + + +       A  G ++  +G ++G
Sbjct: 177 LEKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKEFLGNFLP--AQPGKMIAEDGTVMG 234

Query: 255 RHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307
            H G++ YTIGQR+GLG+       +P FVV  D+  + + VG     + L    +   +
Sbjct: 235 DHMGLMYYTIGQRKGLGIGGGGESDQPWFVVGKDQAKNVLYVGQGFHNDKLYADYLMASD 294

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           ++++ D    +     F C  K R  Q    V V  N+DG   + F +    +  GQA V
Sbjct: 295 LSFVDD----EFTATSFDCTAKFRYRQKDTQVHVDINEDGTAKITFAEPVRAITPGQAVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394
           FY         LGGG I  + ++  V E
Sbjct: 351 FYDG----PECLGGGTIDAAFKNSEVAE 374


>gi|315221594|ref|ZP_07863514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus anginosus F0211]
 gi|315189428|gb|EFU23123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus anginosus F0211]
          Length = 373

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 198/386 (51%), Gaps = 25/386 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 62  VADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R++     D      M R +D  +DQ+YFL   +Q+QL    FPLG ++K 
Sbjct: 122 DYVATGHYARAKR----DEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A + GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H G
Sbjct: 178 EVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGRDMGEHAG 235

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++++
Sbjct: 236 LMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHF 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
             +   E       +C  K R  Q    V V    D   V+F + +  +  GQA VFY  
Sbjct: 296 TREIPAE----FTMECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVFYDE 351

Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396
           +      LGGG+I  + +   +++ +
Sbjct: 352 E----ECLGGGLIDNAYKDGKLQQYI 373


>gi|218891213|ref|YP_002440079.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa LESB58]
 gi|226704774|sp|B7UV15|MNMA_PSEA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218771438|emb|CAW27205.1| tRNA methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 375

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 26/384 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
              P+  RV+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ 
Sbjct: 5   APTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 122 MLGADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI  + G+++G
Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETIEGKVIG 234

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D   + ++VG       L    +   
Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            I W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ+ V
Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  D      LGGG+I  ++  D
Sbjct: 351 FYDGDV----CLGGGVIETAEAWD 370


>gi|320323780|gb|EFW79864.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327920|gb|EFW83925.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 366

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W  
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWAN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|15597822|ref|NP_251316.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO1]
 gi|107102147|ref|ZP_01366065.1| hypothetical protein PaerPA_01003197 [Pseudomonas aeruginosa PACS2]
 gi|116050613|ref|YP_790568.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|14195276|sp|Q9I0L2|MNMA_PSEAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122259736|sp|Q02NB8|MNMA_PSEAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9948693|gb|AAG06014.1|AE004691_5 tRNA methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|115585834|gb|ABJ11849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 375

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 26/384 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
              P+  RV+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ 
Sbjct: 5   APTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 122 MLGADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++G
Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIG 234

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D   + ++VG       L    +   
Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            I W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ+ V
Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  D      LGGG+I  ++  D
Sbjct: 351 FYDGDV----CLGGGVIETAEAWD 370


>gi|125719134|ref|YP_001036267.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sanguinis SK36]
 gi|166235087|sp|A3CRB2|MNMA_STRSV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|125499051|gb|ABN45717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Streptococcus sanguinis SK36]
          Length = 373

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+F+K +  +  GQ  VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQGVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|167623646|ref|YP_001673940.1| tRNA-specific 2-thiouridylase MnmA [Shewanella halifaxensis
           HAW-EB4]
 gi|189040508|sp|B0TQ02|MNMA_SHEHH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167353668|gb|ABZ76281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella halifaxensis HAW-EB4]
          Length = 371

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 28/380 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L A
Sbjct: 67  CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY+R R     D      M R +D  +DQSYFL+    +Q+    FP+G+++K 
Sbjct: 127 DYIAMGHYVRRR-----DIDGTSQMLRGIDGNKDQSYFLYTLGHEQVARSLFPVGELEKS 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G H G
Sbjct: 182 EVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQG 239

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   + +IVG       L  + +   +++W
Sbjct: 240 LMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVGQGGNHPRLMSNGLIANQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          DG    VK R  Q  VP  V  + DD + V F++    V  GQ+ VFY 
Sbjct: 300 VD----RKGPADGSNITVKTRYRQQDVPCRVTYDSDDILRVIFDEPVAAVTPGQSAVFYD 355

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGGII    R 
Sbjct: 356 GEI----CLGGGIIDALIRD 371


>gi|283770696|ref|ZP_06343588.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460843|gb|EFC07933.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 372

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++
Sbjct: 119 GADYVATGHYTRIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H
Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
               ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D
Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAELVRAITPGQAVVFYQGD 350

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGG  I    +++
Sbjct: 351 V----CLGGATIDDVFKNE 365


>gi|251789549|ref|YP_003004270.1| tRNA-specific 2-thiouridylase MnmA [Dickeya zeae Ech1591]
 gi|247538170|gb|ACT06791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya zeae Ech1591]
          Length = 372

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 199/386 (51%), Gaps = 29/386 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 5   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 62  QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + QQL    FP+G++
Sbjct: 122 LGADYIATGHYVRRH-----DIDGKSHLLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGEL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+++G
Sbjct: 177 EKPQVRKIAEQLSLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMG 234

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H G++ +T+GQR+GLG+        +P +VV  D   + + V        L    +  +
Sbjct: 235 EHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVAGNVLYVAQGHEHPRLMSVGLIAQ 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365
           +++W+      + +    +C VK R  Q  +P  +   D D + V F++    V  GQ+ 
Sbjct: 295 QLHWVD----REPLAAPLRCTVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSA 350

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDA 391
           VFY  +      LGGGII    R+  
Sbjct: 351 VFYLGEV----CLGGGIIEERLRAAQ 372


>gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 365

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 26/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G+C A QD  D RRVC
Sbjct: 3   TRVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E  +   V   F   +  G TP P V CNR +KF +LL+    LGAD 
Sbjct: 60  EQIGIPYYGVNFEREYEERVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDLGADY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY + R     D      + R  D  +DQ+YFL   TQ  L    FP+G + K  V
Sbjct: 120 LATGHYAQVRK----DEDGTVALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +AR+ GL +A K DS  ICF+ +  +   +++     A  G I  ++G++LG H+G++
Sbjct: 176 RQIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLM 233

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR+GL +         P FVV  D   + ++V        L    +    ++++ 
Sbjct: 234 YYTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALTADTVSFVA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
               E      F+C  K R  QD  PV V+   +D   V F++ +  +  GQ+ VFY  +
Sbjct: 294 ----ERPPAKRFRCTAKFRYRQDEQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGE 349

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGGGII+  +  D
Sbjct: 350 V----CLGGGIIASREPVD 364


>gi|254241058|ref|ZP_04934380.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
 gi|126194436|gb|EAZ58499.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
          Length = 375

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 26/384 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
              P+  RV+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ 
Sbjct: 5   APTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L    
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD++ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+
Sbjct: 122 MLGADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++G
Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIG 234

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           RH+G++ +TIGQR+GLG+        +P +V+  D   + ++VG       L    +   
Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            I W+     E       +   K+R  Q      +++  +G    F++ +  V  GQ+ V
Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTTEGYRAVFDEPQRAVTPGQSVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  D      LGGG+I  ++  D
Sbjct: 351 FYDGDV----CLGGGVIETAEAWD 370


>gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 365

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/379 (36%), Positives = 201/379 (53%), Gaps = 26/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G+C A QD  D RRVC
Sbjct: 3   TRVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I + +Y  ++E  +   V   F   +  G TP P V CNR +KF +LL+    LGAD 
Sbjct: 60  EQIGIPYYGVNFEREYEERVFQHFLEEFRRGRTPNPDVLCNREIKFKELLACALDLGADY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY + R    +DG     + R  D  +DQ+YFL   TQ  L    FP+G + K  V
Sbjct: 120 LATGHYAQVRQL--EDGSV--ALVRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +AR+ GL +A K DS  ICF+ +  +   +++     A  G I  ++G++LG H+G++
Sbjct: 176 RQIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLM 233

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YTIGQR+GL +         P FVV  D   + ++V        L    +    ++++ 
Sbjct: 234 YYTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALSADTVSFVA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
               E    + F+C  K R  QD  PV V+   +D   V F++ +  +  GQ+ VFY  D
Sbjct: 294 ----ERPPAERFRCTAKFRYRQDDQPVKVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGD 349

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGGGII+  +  D
Sbjct: 350 I----CLGGGIIASREPVD 364


>gi|238754412|ref|ZP_04615768.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
 gi|238707445|gb|EEP99806.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
          Length = 371

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+     QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRH-----DVNGKSQLLRGLDSNKDQSYFLYTLGHDQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A  + L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ LG 
Sbjct: 175 EKPEVRRIAETLDLVTAKKKDSTGICFIGERKFRDFLARYLP--AQPGQILSVDGQYLGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNVLVVAQGHEHPRLMSTGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        V+  F+C VK R  Q  +P  V   DD  + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQTVIAPFRCVVKTRYRQQDIPCTVTPLDDERIDVCFDQPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 349 FYQGEV----CLGGGIIES 363


>gi|330833760|ref|YP_004402585.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
 gi|329307983|gb|AEB82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
          Length = 419

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 46  MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 102

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 103 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 162

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 163 MNLGADYVATGHYAQ----VSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR++A   GL  A K DS  ICF+ +  + + + +     A  G ++ ++G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 276

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        EP FVV  D + + + VG     ESL    +  
Sbjct: 277 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 336

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            ++++  D   E       +C  K R  Q    V V+   D   V F + +  +  G+A 
Sbjct: 337 SQVHFTRDMPEEFK----LECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGKAV 392

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGG+I  + +     + +
Sbjct: 393 VFYDG----QECLGGGMIDMAYKDGEACQYI 419


>gi|238894182|ref|YP_002918916.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546498|dbj|BAH62849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 388

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++   A++ N   +  +    +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 6   VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVGGLFMKNWEEDDG 65

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 66  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A E+ L  A K DS  ICF+ + K+ D + R     
Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G+ +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV  
Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      + +    +C VK R  Q  +P  V   ++D + V
Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381


>gi|123442025|ref|YP_001006008.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|205828986|sp|A1JLK6|MNMA_YERE8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122088986|emb|CAL11797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+      + V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ V
Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|328473137|gb|EGF43985.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329]
          Length = 374

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LEADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGK 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D + + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q  +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 351 AVFYKDDV----CLGGGIIE 366


>gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032]
 gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus ATCC 7061]
 gi|166991121|sp|A8FFP0|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus SAFR-032]
 gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus ATCC 7061]
          Length = 372

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 199/388 (51%), Gaps = 21/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MTKRPEDTRVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R      D       M R +D  +DQ+YFL   TQ+QL  + FP+G
Sbjct: 118 LSLGADYLATGHYARV-----DRTGDEVKMLRGLDANKDQTYFLNQLTQEQLDKVMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K+ VR+LA+E  L  A K DS  ICF+ +  +   + +     A  G +  ++G++ 
Sbjct: 173 DLEKKRVRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGVMQTMDGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G H+G++ YTIGQR+GLG+   G+P FVV  D   + + V        L    I    I+
Sbjct: 231 GEHDGLMYYTIGQRQGLGIGGSGDPWFVVGKDLEQNILFVEQGFHNPLLYSESISAVNIS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W    +  +       C  K R  Q+   V V+   +    V F++    V  GQA VFY
Sbjct: 291 WTRPHIVGEN--GELTCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG I    +       +
Sbjct: 349 DGD----ECLGGGTIDDVFKDGQKLSYV 372


>gi|27366203|ref|NP_761731.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus CMCP6]
 gi|30173408|sp|Q8CWJ6|MNMA_VIBVU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27362403|gb|AAO11258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus CMCP6]
          Length = 374

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 198/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +     S+    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ D + R     A  G+I    G++LG+
Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRIYL 305
           H G++ +T+GQR+GL +          EP FV   D   + +  + G     L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q  +P  +   DD  + V F++ E+ V  GQ+
Sbjct: 295 SQLHWV----EREPIRDVVKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            VFY  D      LGGGII  
Sbjct: 351 AVFYQGDV----CLGGGIIEK 367


>gi|149908394|ref|ZP_01897057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moritella sp. PE36]
 gi|149808557|gb|EDM68492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moritella sp. PE36]
          Length = 379

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 192/379 (50%), Gaps = 28/379 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ VC
Sbjct: 17  KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEDDDNDE---YCAAAEDLADAQAVC 73

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD
Sbjct: 74  DKLGIELHAINFSAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLQFASEVLAAD 133

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY+  R         +  M R +D  +DQSYFL+     Q+    FP+G+++K  
Sbjct: 134 YIAMGHYVSRRQTAD----GKFEMLRGLDSNKDQSYFLYTLDHVQVSRSLFPVGELEKPE 189

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A+K DS  ICF+ + K+ + + +     A  G I  ++G+ +G H G+
Sbjct: 190 VRRIAEEQGLITANKKDSTGICFIGERKFTEFLSKYLP--AQPGKIESVDGEEIGEHQGL 247

Query: 260 INYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           + +T+GQR+GL +         EP +VV  D   + ++V        L    +   +++W
Sbjct: 248 MYHTLGQRKGLHIGGMKNNNNQEPWYVVDKDMERNVLLVAQGHNHPRLFSTGLMASQLHW 307

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +      + +    +C VK R  Q  VP  V    +D + V F+K E+ V  GQ+ VFY 
Sbjct: 308 IS----REPLTQPLRCTVKTRYRQTDVPCLVTPIGEDQIEVTFDKPELAVTPGQSAVFYL 363

Query: 370 SDSNEARVLGGGIISGSKR 388
            D      LGG II    R
Sbjct: 364 DDV----CLGGAIIDVQIR 378


>gi|148996542|ref|ZP_01824260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP11-BS70]
 gi|307066804|ref|YP_003875770.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Streptococcus pneumoniae AP200]
 gi|147757117|gb|EDK64156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP11-BS70]
 gi|306408341|gb|ADM83768.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus pneumoniae AP200]
          Length = 373

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV    + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    +   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|153838264|ref|ZP_01990931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ3810]
 gi|161511058|ref|NP_797509.2| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364461|ref|ZP_05777086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus K5030]
 gi|260877061|ref|ZP_05889416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AN-5034]
 gi|260896850|ref|ZP_05905346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus Peru-466]
 gi|260902426|ref|ZP_05910821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ4037]
 gi|32130287|sp|Q87QL9|MNMA_VIBPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149748319|gb|EDM59178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087006|gb|EFO36701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus Peru-466]
 gi|308093683|gb|EFO43378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AN-5034]
 gi|308110639|gb|EFO48179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ4037]
 gi|308114601|gb|EFO52141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus K5030]
          Length = 374

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LEADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D + + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q  +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 351 AVFYKDDV----CLGGGIIE 366


>gi|238749636|ref|ZP_04611141.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
 gi|238712291|gb|EEQ04504.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
          Length = 373

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGKHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|257082170|ref|ZP_05576531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis E1Sol]
 gi|256990200|gb|EEU77502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis E1Sol]
          Length = 374

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAIQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|316935452|ref|YP_004110434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris DX-1]
 gi|315603166|gb|ADU45701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris DX-1]
          Length = 401

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 214/401 (53%), Positives = 280/401 (69%), Gaps = 10/401 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
               LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A  RK
Sbjct: 2   TEPMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGAAIHRK 61

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+V
Sbjct: 62  GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSV 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL+  R+LGA  LATGHY+ SR          R +    D +RDQSYFLFATT++Q
Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL----ENGSRALVCAADRDRDQSYFLFATTREQ 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GD
Sbjct: 178 LQFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGD 237

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV ++G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI 
Sbjct: 238 IVDIDGRVLGQHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRQVVVGPREALLMDRIV 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR++NW+GDG  +D V DG + FV++RS+++P P +++  + G  V+    E GV+ GQA
Sbjct: 298 LRDVNWIGDGALDDVVGDGLELFVRVRSTREPQPAWLRAANGGYEVELVVGEEGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGIISGSKR------SDAVEESLLSV 399
           CVFY +   +ARVLGGG I  +         D +E   L+ 
Sbjct: 358 CVFYDAAEGQARVLGGGFIKSAAPRRFEGGRDQIEAPALAA 398


>gi|91210289|ref|YP_540275.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UTI89]
 gi|117623318|ref|YP_852231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli APEC O1]
 gi|237706881|ref|ZP_04537362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|300982382|ref|ZP_07176080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 200-1]
 gi|91071863|gb|ABE06744.1| probable ATPase YcfB [Escherichia coli UTI89]
 gi|115512442|gb|ABJ00517.1| putative ATPase [Escherichia coli APEC O1]
 gi|226898091|gb|EEH84350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|300307219|gb|EFJ61739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 200-1]
 gi|315287470|gb|EFU46881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 110-3]
 gi|315296602|gb|EFU55897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 16-3]
 gi|324013226|gb|EGB82445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 60-1]
          Length = 383

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|290581402|ref|YP_003485794.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus mutans NN2025]
 gi|254998301|dbj|BAH88902.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus mutans NN2025]
          Length = 373

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 120 GADYVATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A + GL  A K DS  ICF+ +  + + +       A +G ++ ++G+ +G H
Sbjct: 176 KPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ++L    +   ++
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +            C  K R  Q    V V+ N D   V F++ +  +  GQA VFY
Sbjct: 294 HFTQNM----PDKFTLNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + + + + + +
Sbjct: 350 DGD----ECLGGGLIDNAYQEEKICQYI 373


>gi|77413211|ref|ZP_00789409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 515]
 gi|77160751|gb|EAO71864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 515]
          Length = 373

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 199/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK  GYDVIG  ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGXFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  + D + +     A  G ++ ++G+ +G H
Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     +SL    +   EI
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    +   V F+  +  +  GQA VFY
Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
               NE   LGGG+I  + R D + + +
Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373


>gi|256619544|ref|ZP_05476390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 4200]
 gi|307276004|ref|ZP_07557137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2134]
 gi|256599071|gb|EEU18247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 4200]
 gi|295113315|emb|CBL31952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus sp. 7L76]
 gi|306507334|gb|EFM76471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2134]
          Length = 374

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKRRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|81245791|gb|ABB66499.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 383

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|271500468|ref|YP_003333493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech586]
 gi|270344023|gb|ACZ76788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech586]
          Length = 370

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 29/383 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + ++ +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGITLHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + QQL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DIDGKSRLLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+++G
Sbjct: 175 EKPEVRKIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H G++ +T+GQR+GLG+        +P +VV  D  S+ + V        L    +  +
Sbjct: 233 EHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVASNVLYVAQGHEHPRLMSVGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365
           +++W+      + +    +C VK R  Q  +P  +   D D + V FE+    V  GQ+ 
Sbjct: 293 QLHWVD----REPLSAPLRCTVKTRYRQADIPCLLTPLDADRIDVRFEEPVAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  +      LGGGII    R
Sbjct: 349 VFYQGEV----CLGGGIIEERLR 367


>gi|307287836|ref|ZP_07567872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0109]
 gi|306501170|gb|EFM70476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0109]
 gi|315164727|gb|EFU08744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1302]
          Length = 374

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDLAYQDEKELQYV 374


>gi|296451277|ref|ZP_06893017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP08]
 gi|296880371|ref|ZP_06904334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP07]
 gi|296259883|gb|EFH06738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP08]
 gi|296428612|gb|EFH14496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP07]
          Length = 361

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV
Sbjct: 4   NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D
Sbjct: 64  ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ 
Sbjct: 124 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI
Sbjct: 181 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E+L    +  +++N++      D 
Sbjct: 241 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISI----DT 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S  P P  + R   D + + F++++  +  GQ+ V Y  D     V+
Sbjct: 297 LEEPLRVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VV 352

Query: 379 GGGIISGS 386
           GGGII  S
Sbjct: 353 GGGIIEKS 360


>gi|91226036|ref|ZP_01260963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 12G01]
 gi|91189477|gb|EAS75754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 12G01]
          Length = 374

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 196/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D   + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q+ +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 351 AVFYKGDV----CLGGGIIE 366


>gi|114047179|ref|YP_737729.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-7]
 gi|122944742|sp|Q0HW33|MNMA_SHESR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113888621|gb|ABI42672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. MR-7]
          Length = 372

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 203/385 (52%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A++MGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETAEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G+H G++ +T+GQR+GLG+        +P +VV  D   + ++V   G    L  + ++
Sbjct: 235 IGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMF 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
           + +++W+         V+G +  VK R  Q  +P  +   +D+ + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RKGPVEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  D      LGGGII    R
Sbjct: 351 SAVFYDGDV----CLGGGIIDQLIR 371


>gi|255655293|ref|ZP_05400702.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-23m63]
          Length = 359

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+      + +G CC+   V DARRV
Sbjct: 2   NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I +  YV ++ E F+  VI  F   Y  G+TP PC+ CN+ +KF D     RQ+G D
Sbjct: 62  ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      D+   R ++ + +  ++DQ+Y L+  TQ+QL     P+GD +K+ 
Sbjct: 122 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+EMG+ + +K DSQ+ICFV+   Y + VK+ +     EG  V   G ILG+H GI
Sbjct: 179 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+  G+P+FV+ ++  ++ +++G  E+L    +  +++N++      D 
Sbjct: 239 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISI----DT 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S  P P  + R   D + + F++++  +  GQ+ V Y  D     V+
Sbjct: 295 LEEPLRVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VV 350

Query: 379 GGGIISGS 386
           GGGII  S
Sbjct: 351 GGGIIEKS 358


>gi|238783798|ref|ZP_04627817.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
 gi|238715349|gb|EEQ07342.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
          Length = 373

 Score =  495 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 28/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +   F+C VK R  Q  +P  V   +DD V V F+     V  GQ+ V
Sbjct: 293 LHWVD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDDRVEVRFDNPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
           FY ++      LGGGII     
Sbjct: 349 FYQAEV----CLGGGIIEARYP 366


>gi|194398405|ref|YP_002036838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae G54]
 gi|229487424|sp|B5E605|MNMA_STRP4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194358072|gb|ACF56520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae G54]
          Length = 373

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V     + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYXXAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|238791830|ref|ZP_04635467.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
 gi|238728934|gb|EEQ20451.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
          Length = 373

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 200/387 (51%), Gaps = 29/387 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        +   F+C VK R  Q  +P  V   D+  V V F+     V  GQ+ V
Sbjct: 293 LHWVD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDNERVEVRFDNPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGSKR-SDAV 392
           FY  +      LGGGII      +DAV
Sbjct: 349 FYQGEV----CLGGGIIEERYPLTDAV 371


>gi|84391736|ref|ZP_00991638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio splendidus 12B01]
 gi|84376449|gb|EAP93328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio splendidus 12B01]
          Length = 378

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 195/387 (50%), Gaps = 27/387 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     + +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D
Sbjct: 3   DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             + L AD +A GHY+R      +  D   +  M R +D  +DQSYFL+  +  Q+    
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGVKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G+I    
Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLE 299
           GQ++G+H G++ +T+GQR+GL +          +P FV   D   + +I         L+
Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              +   +++W+        + +   C VK R  Q  +P  +   +DD + V F++ ++ 
Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDDNIKVIFDEPQIA 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           V  GQ+ VFY  +      LGGGII  
Sbjct: 354 VTPGQSAVFYQDEV----CLGGGIIEK 376


>gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-29]
 gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-28]
 gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-3]
 gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-3]
 gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-28]
 gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-29]
          Length = 376

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 200/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q    V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKAKET----EFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I     S    + L
Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375


>gi|158319927|ref|YP_001512434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus oremlandii OhILAs]
 gi|205811148|sp|A8MEV9|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus oremlandii OhILAs]
          Length = 364

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 196/378 (51%), Gaps = 25/378 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD +VV+ MSGGVDSSV A LLK+ GYDV+G+ ++ ++    S   G C + +D 
Sbjct: 1   MSKAPKDTKVVIGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDE---SDELGYCTSAEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVCD I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVRRVCDQIGIPYYSVNFEKEYWDRVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY +     G+       + R +D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 IKLGADYLATGHYAQVDYSDGE-----YRLLRGVDTNKDQTYFLNQLNQYQLSKAMFPVG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K+ +R +A + GL  A K DS  ICF+ +  + + +       A  G I+ L+G++ 
Sbjct: 173 HLQKKDLRQIALDAGLATASKKDSTGICFIGERNFKEFLSNYLP--AKPGKIISLDGEVK 230

Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           G+H+G++ YT+GQR+     G   GEP FVV  D   + + V       SL    +   +
Sbjct: 231 GKHDGLMYYTLGQRKGLGIGGAGTGEPWFVVDKDLEKNILYVTQGETHPSLYSRGLIGAD 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           + W+     E+      KC  K R  Q    V V   + +   V F++ +  +  GQA V
Sbjct: 291 LQWVS----ENPKPSVIKCTAKFRYRQPDQGVTVYVEEGNTCRVMFDEPQKAITPGQAVV 346

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY         LGG  I 
Sbjct: 347 FYDG----VVCLGGATID 360


>gi|24374174|ref|NP_718217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella oneidensis MR-1]
 gi|30173411|sp|Q8CX40|MNMA_SHEON RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24348681|gb|AAN55661.1|AE015704_12 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella oneidensis MR-1]
          Length = 372

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRR----DNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A++MGL   DK DS  ICF+ + K+ + +       A  G+I   +G++
Sbjct: 177 GELEKHEVREIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETADGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + ++V   G    L  + + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGML 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
           + +++W+         ++G +  VK R  Q  +P  +   +D+ + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RKGPINGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|312864108|ref|ZP_07724343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis F0396]
 gi|322515817|ref|ZP_08068761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
 gi|311100340|gb|EFQ58548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis F0396]
 gi|322125703|gb|EFX97025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
          Length = 373

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A  +GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVREIAERVGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373


>gi|85059063|ref|YP_454765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sodalis glossinidius str. 'morsitans']
 gi|123519587|sp|Q2NU15|MNMA_SODGM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84779583|dbj|BAE74360.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sodalis glossinidius str. 'morsitans']
          Length = 369

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 198/376 (52%), Gaps = 28/376 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DAR V
Sbjct: 6   QKKVIVGMSGGVDSSVSAWLLQQQGYRVEGLFMKNWEEDDNEE---YCTAASDLADARAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CDT+ ++ +  ++   + + V   F + Y  G TP P + CN+ +KF   L      LGA
Sbjct: 63  CDTLGIALHTVNFAAEYWDNVFAHFLAEYQVGRTPNPDILCNKEIKFKAFLEFADDDLGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R       D   +  + R +D  +DQSYFL+     QL    FP+G++ K 
Sbjct: 123 DYIATGHYVRRA-----DVNGKSRLLRGLDDNKDQSYFLYTLGHAQLARCLFPIGELAKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ + K+ D + R        G IV ++GQ +GRH G
Sbjct: 178 EVRRIAADLGLATAAKKDSTGICFIGERKFRDFLGRYLP--VQPGAIVSVDGQEVGRHQG 235

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D + +R+IV        L    +   +++W
Sbjct: 236 LMYHTLGQRKGLGIGGTRDGSEDPWYVVDKDLDHNRLIVAQGHQHPRLMSTGLTAGQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + + +  +C VKIR  Q  +   V    DG + V F++    V  GQ+ VFY 
Sbjct: 296 V----EREPLTEALRCTVKIRYRQPDIACLVTPQADGRLQVTFDQPVTAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIISG 385
           ++    R LGGGII  
Sbjct: 352 AE----RCLGGGIIEA 363


>gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2]
 gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2]
          Length = 373

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 202/383 (52%), Gaps = 24/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+  
Sbjct: 58  EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R    V +DG  R  + R +D  +DQ+YFL A +Q QL    FP+G
Sbjct: 118 LDLGADYVATGHYAR---VVEEDG--RFTLLRGVDSNKDQTYFLNALSQAQLSRTMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
            + K  VR +A   GL  A K DS  +CF+ +  + + +       A  GD+V +  G++
Sbjct: 173 HLPKPEVRRIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLP--AKGGDMVDIATGEV 230

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            GRH+G++ YT+GQR+     G   GEP FV   D   + + V       SL    +   
Sbjct: 231 KGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLIAT 290

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           ++NW+            F+C  K R  Q    V +Q   DG V+V F+  +  +  GQA 
Sbjct: 291 DVNWIEGADAR--PSGEFRCTAKFRYRQPDQQVTLQWLPDGTVHVVFDIHQKAITPGQAV 348

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  +    R LGGG I   ++
Sbjct: 349 VFYDGE----RCLGGGTIDKVEK 367


>gi|254506120|ref|ZP_05118264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus 16]
 gi|219550938|gb|EED27919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus 16]
          Length = 374

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 120/383 (31%), Positives = 194/383 (50%), Gaps = 27/383 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           L AD +A GHY+R      +  D   +  M R +D  +DQSYFL+  +  Q+    FP+G
Sbjct: 120 LDADYIAMGHYVRRTFPTQEELDAGAKPEMLRGLDSNKDQSYFLYTLSSDQVARSLFPVG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G+I    G+++
Sbjct: 180 ELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237

Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           G+H G++ +T+GQR+GL +          EP FV   D   + +I         L+   +
Sbjct: 238 GKHQGLMYHTLGQRKGLHIGGQKGGGGNEEPWFVGDKDLKRNVLIAVQGKDHPLLKSEGL 297

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+        + D  KC VK R  Q  +P  +   DD  + V F++ ++ V  G
Sbjct: 298 IASQLHWVD----RTPITDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPG 353

Query: 363 QACVFYTSDSNEARVLGGGIISG 385
           Q+ VFY  +      LGGGII  
Sbjct: 354 QSAVFYQGEV----CLGGGIIEK 372


>gi|227886510|ref|ZP_04004315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 83972]
 gi|300975599|ref|ZP_07173078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 45-1]
 gi|301051077|ref|ZP_07197911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 185-1]
 gi|227836714|gb|EEJ47180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 83972]
 gi|300297249|gb|EFJ53634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 185-1]
 gi|300410262|gb|EFJ93800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 45-1]
 gi|315293099|gb|EFU52451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 153-1]
          Length = 383

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+   + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|225853749|ref|YP_002735261.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae JJA]
 gi|254811466|sp|C1CBU0|MNMA_STRZJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225723263|gb|ACO19116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae JJA]
          Length = 373

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G H
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV    + + + VG     +SL    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTCDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R   V + +
Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373


>gi|163942146|ref|YP_001647030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus weihenstephanensis KBAB4]
 gi|205812536|sp|A9VIM2|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus weihenstephanensis KBAB4]
          Length = 371

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 201/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++   A+   G C A +D 
Sbjct: 1   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 173 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      F C  K R  Q    V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 291 WVSNKAKE----KEFTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I     S    + L
Sbjct: 347 DGD----ECLGGATIDEVYHSGKKLDYL 370


>gi|91978423|ref|YP_571082.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisB5]
 gi|91684879|gb|ABE41181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisB5]
          Length = 402

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 221/405 (54%), Positives = 283/405 (69%), Gaps = 12/405 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
             + LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RK
Sbjct: 2   TESMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRK 61

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+V
Sbjct: 62  GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSV 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL+  R+LGA  LATGHY+ SR    DDG   R +    D +RDQSYFLFATT++Q
Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL--DDGS--RALICAADRDRDQSYFLFATTREQ 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+
Sbjct: 178 LDFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGE 237

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV LNG +LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI 
Sbjct: 238 IVDLNGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIV 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR++NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQA
Sbjct: 298 LRDVNWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401
           CVFY +   +ARVLGGG I  +         R DA   +L ++ G
Sbjct: 358 CVFYDAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 402


>gi|229549592|ref|ZP_04438317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255972288|ref|ZP_05422874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T1]
 gi|256956522|ref|ZP_05560693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DS5]
 gi|256963413|ref|ZP_05567584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HIP11704]
 gi|300860987|ref|ZP_07107074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TUSoD Ef11]
 gi|307272736|ref|ZP_07553983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0855]
 gi|312951194|ref|ZP_07770097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0102]
 gi|229305257|gb|EEN71253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255963306|gb|EET95782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T1]
 gi|256947018|gb|EEU63650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DS5]
 gi|256953909|gb|EEU70541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HIP11704]
 gi|300850026|gb|EFK77776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TUSoD Ef11]
 gi|306510350|gb|EFM79373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0855]
 gi|310630859|gb|EFQ14142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0102]
 gi|315034636|gb|EFT46568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0027]
 gi|315143340|gb|EFT87356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2141]
 gi|315152679|gb|EFT96695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0031]
 gi|315159473|gb|EFU03490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0312]
 gi|315161320|gb|EFU05337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0645]
 gi|323481203|gb|ADX80642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis 62]
          Length = 374

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIADRAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|205822121|sp|Q6NA79|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 397

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 214/378 (56%), Positives = 278/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA+GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG   R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGS--RALVCAADRDRDQSYFLFATTREQLQFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       GDIV +
Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ LD    +V+VGPRE+L + RI LR+I
Sbjct: 238 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  +D + DG + FV++RS++ P P +++  + G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            +   +ARVLGGG I  +
Sbjct: 358 DAAEGQARVLGGGFIKSA 375


>gi|251783539|ref|YP_002997844.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392171|dbj|BAH82630.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 379

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 9   DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 126 GADYVATGHYAQVKR----DEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 182 KPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEH 239

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +
Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVV 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 300 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R     + +
Sbjct: 356 DGE----ECLGGGMIDMAYRDGQPCQYI 379


>gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK150]
          Length = 373

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D +    M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DQEGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  + + + +     A  G ++ L G+ +G+H
Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        EP FVV  D + + + VG     ++L    +   ++
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V+ ++ +  V  GQA VFY
Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVAVKGDKAVVNVDQPQRAVTPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + ++  V + +
Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373


>gi|323128291|gb|ADX25588.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 373

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGG+I  + R     + +
Sbjct: 350 DGE----ECLGGGMIDMAYRDGQPCQYI 373


>gi|119775197|ref|YP_927937.1| tRNA-specific 2-thiouridylase MnmA [Shewanella amazonensis SB2B]
 gi|205816912|sp|A1S7B1|MNMA_SHEAM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119767697|gb|ABM00268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella amazonensis SB2B]
          Length = 377

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 192/379 (50%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 13  ANSSKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDE---YCAAAEDLKDA 69

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 70  QAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDI 129

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R R     D   +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 130 LDADYIAMGHYVRRR-----DTDGKTEMLRGIDGNKDQSYFLYTLSHEQVARSLFPVGEL 184

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL   DK DS  ICF+ + K+ D +       A  G+I    G I+GR
Sbjct: 185 EKPEVRRIAEEQGLITHDKKDSTGICFIGERKFKDFLATYLP--AQPGNIETPEGDIIGR 242

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D   + ++V        L    + + +
Sbjct: 243 HEGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQ 302

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+          DG    VK R  Q  +P  V+  D+  + V F++    V  GQ+ V
Sbjct: 303 LHWVD----RTGPADGATISVKTRYRQQDIPCTVKIIDEQTIEVLFDEPVAAVTPGQSAV 358

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 359 FYDGEV----CLGGGIIDT 373


>gi|322374000|ref|ZP_08048534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C150]
 gi|321276966|gb|EFX54037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C150]
          Length = 373

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVREIAEHAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D L E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMLEE----FDMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373


>gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides DSM 2048]
 gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH603]
 gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH621]
 gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH621]
 gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH603]
 gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides DSM 2048]
          Length = 376

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 201/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++   A+   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      F C  K R  Q    V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKAKE----KEFTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I     S    + L
Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375


>gi|153835174|ref|ZP_01987841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi HY01]
 gi|148868331|gb|EDL67456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi HY01]
          Length = 374

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 196/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D   + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q+ +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 351 AVFYKDDV----CLGGGIIE 366


>gi|296102847|ref|YP_003612993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057306|gb|ADF62044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 370

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G IV ++G  +G+
Sbjct: 175 EKPEVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIVTVDGDEIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + +    +C VK R  Q  +P  +   +DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPLKGTLRCTVKTRYRQTDIPCTITALDDDRIDVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY+ D      LGGGII 
Sbjct: 349 FYSGDI----CLGGGIIE 362


>gi|238762225|ref|ZP_04623197.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
           33638]
 gi|238699572|gb|EEP92317.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
           33638]
          Length = 373

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D + +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVEGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+      + V   F+C VK R  Q  +P  V   DD  V V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDELVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|301381398|ref|ZP_07229816.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058396|ref|ZP_07249937.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           K40]
 gi|302130355|ref|ZP_07256345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 366

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  GDI    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W+ 
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K   K+R  Q   P  +++   G    F+  +  V  GQ+ VFY  + 
Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI 347

Query: 373 NEARVLGGGIISGSKRSDAVEE 394
                LGGG+I  ++   + ++
Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365


>gi|257416449|ref|ZP_05593443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis AR01/DG]
 gi|257158277|gb|EEU88237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ARO1/DG]
          Length = 374

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 196/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M 
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMG 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|312881247|ref|ZP_07741045.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371139|gb|EFP98593.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 369

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 195/383 (50%), Gaps = 29/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +N K  +V+V MSGGVDSSV A LLK+ GY V G+ ++ +           C A +D+
Sbjct: 1   MSENSK-KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNED---YCTAAEDL 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 57  ADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLDFA 116

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R      D   ++  M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 117 DDVLEADYIAMGHYVRRSCIESD---QKPQMLRGLDGNKDQSYFLYTLSHEQIGRSLFPV 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A E GL  A K DS  ICF+ + K+ D + +     A  G I    G+ 
Sbjct: 174 GELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSKYLP--AQPGKIETPEGKE 231

Query: 253 LGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIV---GPRESLEVHR 302
           +G H G++ +T+GQR+GL +          EP +V   D   + +I         L+   
Sbjct: 232 IGEHQGLMYHTLGQRKGLHIGGQKGGGGNEEPWYVADKDLKRNVLIAVQGADHPLLKSEG 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
           +   +++W+        +V   KC VK R  Q+ +P  +   D+G + V F+  +V V  
Sbjct: 292 LIASQLHWVD----RSPLVSEIKCSVKTRYRQNDIPCTIVPIDNGSIKVIFDNPQVAVTP 347

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY  D      LGGGII 
Sbjct: 348 GQSAVFYQGDV----CLGGGIIE 366


>gi|113969944|ref|YP_733737.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-4]
 gi|123029751|sp|Q0HJT7|MNMA_SHESM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113884628|gb|ABI38680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. MR-4]
          Length = 372

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 201/385 (52%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A++MGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETAEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G+H G++ +T+GQR+GLG+        +P +VV  D   + ++V   G    L  + + 
Sbjct: 235 IGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGML 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
           + +++W+          +G +  VK R  Q  +P  +   +D+ + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|86147101|ref|ZP_01065418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. MED222]
 gi|218710012|ref|YP_002417633.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus LGP32]
 gi|85835166|gb|EAQ53307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. MED222]
 gi|218323031|emb|CAV19208.1| Probable tRNA(5-methylaminomethyl-2-thiouridylate)-
           methyltransferase [Vibrio splendidus LGP32]
          Length = 378

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 195/387 (50%), Gaps = 27/387 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     + +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D
Sbjct: 3   DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             + L AD +A GHY+R      +  D   +  M R +D  +DQSYFL+  +  Q+    
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGAKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G+I    
Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLE 299
           GQ++G+H G++ +T+GQR+GL +          EP FV   D   + +  + G     L+
Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLK 297

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVG 358
              +   +++W+        + +   C VK R  Q  +P  +   DD  + V F++ ++ 
Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           V  GQ+ VFY  +      LGGGII  
Sbjct: 354 VTPGQSAVFYLDNV----CLGGGIIEK 376


>gi|293409499|ref|ZP_06653075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B354]
 gi|291469967|gb|EFF12451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B354]
          Length = 395

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 13  VIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 72

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 73  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 129

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 130 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 184

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 185 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 242

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 243 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 302

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  +DD + V
Sbjct: 303 GHEHPRLMSVGLIAQQLHWVD----REPFTSTMRCTVKTRYRQTDIPCTVKALDDDRIEV 358

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 359 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 388


>gi|55821970|ref|YP_140412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMG
           18311]
 gi|55823887|ref|YP_142328.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
           CNRZ1066]
 gi|81558821|sp|Q5LXJ9|MNMA_STRT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81560008|sp|Q5M249|MNMA_STRT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|55737955|gb|AAV61597.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptococcus thermophilus LMG 18311]
 gi|55739872|gb|AAV63513.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptococcus thermophilus CNRZ1066]
 gi|312279316|gb|ADQ63973.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus thermophilus ND03]
          Length = 373

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I++ +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373


>gi|90408225|ref|ZP_01216392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas sp. CNPT3]
 gi|90310671|gb|EAS38789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas sp. CNPT3]
          Length = 369

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 208/378 (55%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +    +S+    C A QD+ DA
Sbjct: 3   DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSSE---YCAAAQDLQDA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLDIKLHTVNFSAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R   G        + R +D  +DQSYFL+A  ++Q+    FP+G++
Sbjct: 120 LGADFIATGHYVRRREVNG-----HVQLLRGLDTNKDQSYFLYAVGEKQIAQTLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + GL  A+K DS  ICF+ + K+ D ++      A  GDIV   G+++G+
Sbjct: 175 EKPEVRRIAEQQGLITANKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPEGKVIGK 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++R++V       +L  + +   +
Sbjct: 233 HQGLMYHTLGQRKGLGIGGRQDANEDPWYVVAKDMPNNRLLVAQGANNPALLSYGLIATK 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
            +W+   + ++A    F C +K R  Q  VP  V   +DD + V FE  +  V  GQ+ V
Sbjct: 293 CDWVDRKILKEA----FTCTLKTRYRQQDVPCTVTPLDDDTLRVIFETPQSAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGG II 
Sbjct: 349 FYMQEV----CLGGAIIE 362


>gi|163790364|ref|ZP_02184796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carnobacterium sp. AT7]
 gi|159874435|gb|EDP68507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carnobacterium sp. AT7]
          Length = 374

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 196/390 (50%), Gaps = 26/390 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RVVV MSGGVDSSV A +LK+ GYDV+G+ ++ ++    +   G C A +D  D
Sbjct: 2   QDNSKTRVVVGMSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGMCTATEDYND 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V + I + +Y  ++E+++ + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 59  VALVANQIGIPYYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M
Sbjct: 119 LGADYVATGHYAQ----VERDENGVTHMLRGVDNNKDQTYFLNQLSQEQLAKTLFPLGGM 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  A K DS  +CF+ +  +   +       A  G+++ ++G+I G+
Sbjct: 175 QKPEVRRIAEEAGLATAKKKDSTGVCFIGERDFKKFLMTYLP--AQPGNMMTVDGEIKGQ 232

Query: 256 HNGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H+G++ YTI    G   G G    +P FVV  D  ++ + VG     E L    +   ++
Sbjct: 233 HDGLMYYTIGQRQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           ++  +    +     FKC  K R  Q    V V  N+DG    V+F++    +  GQA V
Sbjct: 293 HFTTN----EEKSRVFKCTAKFRYRQADTGVTVHLNEDGTAATVEFDEPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY         LGGG I  +       + +
Sbjct: 349 FYDG----MECLGGGTIDAAYNETKELQYV 374


>gi|323704672|ref|ZP_08116250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536134|gb|EGB25907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 369

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 204/385 (52%), Gaps = 24/385 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    ++++VVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    S   G C A +D 
Sbjct: 1   MAYENQNVKVVVGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDEEDDS---GYCTAAEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVCD I + +Y  ++ + + + V   F + Y +G TP P V CN+ +KF   L  +
Sbjct: 58  EDVVRVCDKIGIPYYSINFTKEYWDRVFQYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFS 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++GAD +ATGHY R     G        M + +D  +DQ+YFL    Q+QL    FP+G
Sbjct: 118 MKIGADYIATGHYARIEHIDG-----HYKMLKGVDKNKDQTYFLCELGQKQLSKTMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K  VR++AR+ GL  ADK DS  ICF+ + K+ + + +     A  G+I  L+G++L
Sbjct: 173 HLDKSEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVL 230

Query: 254 GRHNGIINYTI---GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           GRH+G++ YT+         GV  GEP FVV  D  ++ + V       +L  + ++ + 
Sbjct: 231 GRHDGLMFYTLGQRRGIGIGGVGTGEPWFVVDKDVENNILYVAQGDKNPALYSYGLFTKN 290

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           +NW+      D   D  +C  K R  Q    V V + D+G  V F+K +  V  GQ  VF
Sbjct: 291 VNWIDG----DMNFDELRCKAKFRYRQPDQDVMVFKKDNGYLVVFDKPQRAVTPGQFVVF 346

Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
           Y  +      LGGG+I    + +  
Sbjct: 347 YDGE----YCLGGGVIETIYKDEKA 367


>gi|324005950|gb|EGB75169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 57-2]
          Length = 383

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                 L    +   +++W+      +      +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIALQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|163801953|ref|ZP_02195849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. AND4]
 gi|159174094|gb|EDP58902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. AND4]
          Length = 374

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 198/380 (52%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +  ++  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LDADYIAMGHYVRRSF---PENGKKPQMLRGLDSNKDQSYFLYTLSNEQIARSLFPVGNL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D   + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q+ +P   V  +D+ + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIVPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGGGII 
Sbjct: 351 AVFYEGDV----CLGGGIIE 366


>gi|94991468|ref|YP_599568.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10270]
 gi|94544976|gb|ABF35024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10270]
          Length = 379

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 9   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 126 GADYVATGHYAQVKR----DENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V   +D   V F + +  +  GQA VFY
Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379


>gi|70726299|ref|YP_253213.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus haemolyticus
           JCSC1435]
 gi|123660380|sp|Q4L6W8|MNMA_STAHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68447023|dbj|BAE04607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 370

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 137/378 (36%), Positives = 204/378 (53%), Gaps = 22/378 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNKDIRVVVGMSGGVDSSVTAHVLKDQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +L
Sbjct: 59  IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R R +  DDG     M R +D  +DQ+YFL   +QQQL  + FP+GD+ 
Sbjct: 119 GADYVATGHYARIRRH--DDG--HVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDID 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E  L  A K DS  ICF+ +  +   + +     A  G++  LNG  +G H
Sbjct: 175 KKEVRKIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGEMRTLNGDKMGMH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312
           +G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +++ 
Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDFSFVN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +    +GF+C  K R  Q    VFVQR + + + V F++    +  GQA VFY  +
Sbjct: 293 PVDLD----NGFECTAKFRYRQKDTKVFVQRESQNALRVTFDEPVRAITPGQAVVFYDEE 348

Query: 372 SNEARVLGGGIISGSKRS 389
                 LGG  I    ++
Sbjct: 349 V----CLGGATIDDVFKT 362


>gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equinus ATCC 9812]
 gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equinus ATCC 9812]
          Length = 373

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 192/388 (49%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D + + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQVGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 120 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+         P FVV  D + + + VG     ESL    +    +
Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +   K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             +      LGGGII  + +     + +
Sbjct: 350 DGE----ECLGGGIIDMAYKDGVACQYI 373


>gi|209560263|ref|YP_002286735.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes NZ131]
 gi|229487429|sp|B5XJA6|MNMA_STRPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209541464|gb|ACI62040.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus pyogenes NZ131]
          Length = 373

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D   +  M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGKVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|205829105|sp|Q1JED4|MNMA_STRPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V   +D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|119944723|ref|YP_942403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas ingrahamii 37]
 gi|166235075|sp|A1STI9|MNMA_PSYIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119863327|gb|ABM02804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas ingrahamii 37]
          Length = 367

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A QD+ DA
Sbjct: 3   DNSQVKVIVGMSGGVDSSVSAYLLQQQGYLVEGLFMKNWEEDDTDQ---YCAAAQDLEDA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QSVCDKLGIPLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R   G        + R +D  +DQSYFL+A  ++Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRREVDG-----HVQLLRGLDNNKDQSYFLYAIGEKQIAKSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A +  L   +K DS  ICF+ + K+ D ++      A  GDIV   G+++G+
Sbjct: 175 EKPEVRRIAEQQDLITHNKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPTGEVIGQ 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+         P +VV  D +++R++V       +L  + +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGLQNSNENPWYVVGKDMDNNRLLVAQGADHPALFSYGLIAKQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
            +W+            F+C VK R  Q  +P  V   +DD + V F+ ++  V  GQ+ V
Sbjct: 293 CDWVD----RTPKKSTFRCTVKTRYRQQDIPCTVTPLDDDTLKVIFDTAQAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGG II 
Sbjct: 349 FYNDEV----CLGGAIIE 362


>gi|229545347|ref|ZP_04434072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1322]
 gi|257084787|ref|ZP_05579148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Fly1]
 gi|229309554|gb|EEN75541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1322]
 gi|256992817|gb|EEU80119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Fly1]
          Length = 374

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 195/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V   G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEEGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  ++ + VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I    + +   + +
Sbjct: 350 YDG----MECLGGGLIDRVYQDEKELQYV 374


>gi|90422506|ref|YP_530876.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisB18]
 gi|90104520|gb|ABD86557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisB18]
          Length = 404

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/399 (53%), Positives = 280/399 (70%), Gaps = 4/399 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
            A  LNSLDL+  P+D R+VVAMSGGVDSS  AALLK +GYDV+G+TLQLY+   A  RK
Sbjct: 2   TAAMLNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRK 61

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V D I + HYV DYE RF+ +VI  FA+SYA GETP+PC++CNR++
Sbjct: 62  GACCAGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSI 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLLS  R+LGA  LATGHY+ SR          R +    D +RDQSYFLFATT+ Q
Sbjct: 122 KFRDLLSTARELGASALATGHYVSSRRLAD----GSRALVCASDADRDQSYFLFATTRDQ 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV R+       G+
Sbjct: 178 LDYLRFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGE 237

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV L+G++LG+H GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPRE+L + RI 
Sbjct: 238 IVDLDGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIV 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR++NW+GD   + AV DG + FV++RS++ P P +++  D G  V+    E GV+ GQA
Sbjct: 298 LRDVNWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           CVFY + + +ARVLGGG I  +    A + +L       
Sbjct: 358 CVFYDAPAGQARVLGGGFIKSATPRAAGKSALRGAPASR 396


>gi|116628661|ref|YP_821280.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
           LMD-9]
 gi|122266745|sp|Q03I88|MNMA_STRTD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116101938|gb|ABJ67084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus thermophilus LMD-9]
          Length = 373

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I++ +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKAMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  + + + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ESL    +    I
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASTI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V+   D   V F + +  +  GQA VFY
Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + +   V + +
Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373


>gi|238758422|ref|ZP_04619599.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
 gi|238703326|gb|EEP95866.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
          Length = 373

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +QL    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G 
Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDLANNILLVAQGHEHPRLMSVGLAAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ V
Sbjct: 293 LHWVD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDSPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEV----CLGGGIIE 362


>gi|148980425|ref|ZP_01816047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrionales bacterium SWAT-3]
 gi|145961228|gb|EDK26541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrionales bacterium SWAT-3]
          Length = 378

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 196/387 (50%), Gaps = 27/387 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     + +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D
Sbjct: 3   DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L  
Sbjct: 60  LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEF 119

Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             + L AD +A GHY+R      +  +   +  M R +D  +DQSYFL+  +  Q+    
Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELEAGVKPEMLRGLDSNKDQSYFLYTLSSDQVARSL 179

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  GDI    
Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPE 237

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLE 299
           G+++G+HNG++ +T+GQR+GL +          +P FV   D   + +I         L+
Sbjct: 238 GKVIGKHNGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVG 358
              +   +++W+        + +   C VK R  Q  +P  +   DD  + V F++ ++ 
Sbjct: 298 SEGLIASQLHWVN----RTPIAEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           V  GQ+ VFY  D      LGGGII  
Sbjct: 354 VTPGQSAVFYQDDV----CLGGGIIEK 376


>gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Shewanella violacea DSS12]
 gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Shewanella violacea DSS12]
          Length = 376

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 203/402 (50%), Gaps = 41/402 (10%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M   E T LN         + +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 1   MAAIEPTALN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 52  DE---YCAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L    + L AD +A GHY+R       D   +  M R +D  +DQSYFL+ 
Sbjct: 109 NKEIKFKAFLEFADEILDADFIAMGHYVRRS-----DETGQSRMLRGIDGNKDQSYFLYT 163

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D +       
Sbjct: 164 LSHEQIARSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP-- 221

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  GDI    G+++G+H G++ +T+GQR+GLG+        +P +VV  + + + ++VG 
Sbjct: 222 AQPGDIETAEGEVIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDD 346
                 L     Y  +++W+         VD  K  VK R  Q  V   +      + +D
Sbjct: 282 GGTHPRLMSLGFYADQLHWVD----RKGPVDEAKITVKTRYRQRDVACTLFLETNDKGED 337

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            + V F++    V  GQ+ VFY+ +      LGGGII    R
Sbjct: 338 TIRVLFDEPVAAVTPGQSAVFYSGE----LCLGGGIIDSLIR 375


>gi|50915203|ref|YP_061175.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10394]
 gi|94995352|ref|YP_603450.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10750]
 gi|50904277|gb|AAT87992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10394]
 gi|94548860|gb|ABF38906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10750]
          Length = 379

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 9   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379


>gi|139474609|ref|YP_001129325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes str. Manfredo]
 gi|68053070|sp|Q5X9C1|MNMA_STRP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235086|sp|A2RH05|MNMA_STRPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829106|sp|Q1J455|MNMA_STRPF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134272856|emb|CAM31137.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes str. Manfredo]
          Length = 373

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|81615317|sp|Q6LT18|MNMA_PHOPR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46912768|emb|CAG19558.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum SS9]
          Length = 377

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 197/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA
Sbjct: 9   DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEE---YCSAAEDLADA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 66  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 125

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY R      +    +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 126 LEADYIAMGHYTRRSFPTAE--GEKPKMLRGVDSNKDQSYFLYTLSHEQIARSLFPVGEL 183

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G I   + G+++G
Sbjct: 184 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIG 241

Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
            H G++ +T+GQR+GL       G  + +  +VV  D   + +IVG       L+ + + 
Sbjct: 242 EHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLV 301

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
             +++W+        + +   C VK R  Q+ +P  +   DD  + V F++ ++ V  GQ
Sbjct: 302 ASQLDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 357

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+++      LGGGII 
Sbjct: 358 SAVFYSNEI----CLGGGIIE 374


>gi|114706635|ref|ZP_01439536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fulvimarina pelagi HTCC2506]
 gi|114538027|gb|EAU41150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fulvimarina pelagi HTCC2506]
          Length = 394

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/384 (55%), Positives = 271/384 (70%), Gaps = 6/384 (1%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
            T LNSLD+ K P+D RV+VAMSGGVDSSV AA+LK +GYDV+G+TLQLY++     + G
Sbjct: 2   TTHLNSLDIPKAPEDTRVIVAMSGGVDSSVTAAILKDEGYDVVGITLQLYDAGDTPAKAG 61

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +CCAGQD+ DARRVCD + + HYV DYEE FR AVI PFA +Y AGETP+PCV CN+TVK
Sbjct: 62  ACCAGQDIRDARRVCDLLGIPHYVLDYEENFREAVIDPFADAYVAGETPIPCVSCNQTVK 121

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F DLL     LG D LATGHYI SR          R + RP DL+RDQSYFL+ TTQ+Q+
Sbjct: 122 FRDLLKTAMDLGGDALATGHYIESRKR-----GNHRSLHRPFDLDRDQSYFLYGTTQKQV 176

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPL  + K+  R++A + GL IA K DSQDICFV  G+Y D+V+R+       G+I
Sbjct: 177 DFLRFPLASLTKDETREIAAKHGLAIASKPDSQDICFVPTGRYSDLVRRLRPEAGDPGEI 236

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VH++G++LG H GIINYT+GQRRGLGVA GEPL+VV LD  + RV+VGPRE+L    + L
Sbjct: 237 VHIDGRVLGEHEGIINYTVGQRRGLGVAAGEPLYVVKLDPATRRVVVGPREALATRAVRL 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQA 364
           RE+NWL +   E    +  + FVK+RS++ P P  +  + +G + V+   +E GVA GQA
Sbjct: 297 REVNWLAEESAEVYATETREIFVKLRSTRPPSPARLAADGEGGWMVELLAAEYGVAKGQA 356

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
           CVFY ++   A VLGGGII GS +
Sbjct: 357 CVFYGAEGAGAEVLGGGIIDGSIQ 380


>gi|327480910|gb|AEA84220.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 4166]
          Length = 362

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 194/374 (51%), Gaps = 26/374 (6%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD I
Sbjct: 2   IVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADAQAVCDRI 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD++AT
Sbjct: 59  GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIAT 118

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY+R R     D   R  + + +D  +DQSYFL A   +QL    FP+G+++K  VR +
Sbjct: 119 GHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELEKPEVRAI 173

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A + GL  A K DS  ICF+ + ++ D +K+     A  G+I  ++G+++GRH+G++ +T
Sbjct: 174 AEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETVDGEVIGRHHGLMYHT 231

Query: 264 IGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+        EP +V+  D   + +IVG       L    +   EI W+    
Sbjct: 232 IGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEIYWVNPVD 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    K   K+R  Q      +++  DG    FE  +  V  GQ+ VFY  +    
Sbjct: 292 LS----APLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVVFYDGEV--- 344

Query: 376 RVLGGGIISGSKRS 389
             LGGG+I  ++  
Sbjct: 345 -CLGGGVIEQAEPW 357


>gi|269960819|ref|ZP_06175190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi 1DA3]
 gi|269834483|gb|EEZ88571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi 1DA3]
          Length = 380

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 197/383 (51%), Gaps = 28/383 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           L AD +A GHY+R          + + +  M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 120 LDADYIAMGHYVRRSFPENALPGEEQEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPV 179

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           GD++K  VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G++
Sbjct: 180 GDLEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHR 302
           +G+H G++ +T+GQR+GL +          +P FV   D   + +I         L+   
Sbjct: 238 IGQHQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEG 297

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVAS 361
           +   +++W+      + + D  KC VK R  Q+ +P  +   DD  + V F++ ++ V  
Sbjct: 298 LLASQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTP 353

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ VFY  D      LGGGII 
Sbjct: 354 GQSAVFYKDDV----CLGGGIIE 372


>gi|329116668|ref|ZP_08245385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parauberis NCFD 2020]
 gi|326907073|gb|EGE53987.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parauberis NCFD 2020]
          Length = 372

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 2   DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDELGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 59  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYKAGRTPNPDVMCNKEIKFKAFLDYAMTL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    +  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 119 GADYVATGHYAQ----IERDQYGTVHMLRGVDNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 175 KPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMLTVDGRDMGEH 232

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I
Sbjct: 233 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASTI 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       +C  K R  Q    V V    D   V F++ +  +  GQA VFY
Sbjct: 293 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFDEEQRAITPGQAVVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGGII  + ++    + +
Sbjct: 349 DG----QECLGGGIIDMAFKNGQPCQYI 372


>gi|217973050|ref|YP_002357801.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS223]
 gi|205821978|sp|A3D5F8|MNMA_SHEB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811460|sp|B8E945|MNMA_SHEB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|217498185|gb|ACK46378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS223]
          Length = 372

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+EMGL   DK DS  ICF+ + K+ + +       A  G+I    G++
Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
           + +++W+         VDG    VK R  Q  VP  +   D+  + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|22125693|ref|NP_669116.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis KIM 10]
 gi|45441579|ref|NP_993118.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51596752|ref|YP_070943.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
           32953]
 gi|108807881|ref|YP_651797.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Antiqua]
 gi|108812155|ref|YP_647922.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Nepal516]
 gi|145599092|ref|YP_001163168.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Pestoides F]
 gi|149366398|ref|ZP_01888432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162421419|ref|YP_001607233.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Angola]
 gi|165925423|ref|ZP_02221255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938528|ref|ZP_02227085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008070|ref|ZP_02228968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211105|ref|ZP_02237140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401703|ref|ZP_02307194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421866|ref|ZP_02313619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426312|ref|ZP_02318065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470788|ref|ZP_02335492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis FV-1]
 gi|170023961|ref|YP_001720466.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895819|ref|YP_001872931.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928774|ref|YP_002346649.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92]
 gi|229841625|ref|ZP_04461783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843742|ref|ZP_04463885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229894486|ref|ZP_04509668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides A]
 gi|229902476|ref|ZP_04517595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|270490345|ref|ZP_06207419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis KIM D27]
 gi|294504164|ref|YP_003568226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Z176003]
 gi|24638321|sp|Q8ZFQ5|MNMA_YERPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73920130|sp|Q669Q4|MNMA_YERPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122980130|sp|Q1CI58|MNMA_YERPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123245748|sp|Q1C6S0|MNMA_YERPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828988|sp|B2K711|MNMA_YERPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828989|sp|A9R0L5|MNMA_YERPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828990|sp|A4TLN3|MNMA_YERPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828991|sp|B1JI67|MNMA_YERPY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21958608|gb|AAM85367.1|AE013782_8 hypothetical protein y1799 [Yersinia pestis KIM 10]
 gi|45436440|gb|AAS61995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51590034|emb|CAH21668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis IP 32953]
 gi|108775803|gb|ABG18322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|108779794|gb|ABG13852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Antiqua]
 gi|115347385|emb|CAL20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CO92]
 gi|145210788|gb|ABP40195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides F]
 gi|149290772|gb|EDM40847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162354234|gb|ABX88182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Angola]
 gi|165913643|gb|EDR32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922532|gb|EDR39683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992452|gb|EDR44753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208285|gb|EDR52765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960351|gb|EDR56372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048808|gb|EDR60216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054667|gb|EDR64471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750495|gb|ACA68013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis YPIII]
 gi|186698845|gb|ACC89474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis PB1/+]
 gi|229680522|gb|EEO76619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|229689350|gb|EEO81413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694088|gb|EEO84136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703505|gb|EEO90522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides A]
 gi|262362281|gb|ACY59002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis D106004]
 gi|262366214|gb|ACY62771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis D182038]
 gi|270338849|gb|EFA49626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis KIM D27]
 gi|294354623|gb|ADE64964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Z176003]
 gi|320014781|gb|ADV98352.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 371

 Score =  493 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ++G+
Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGK 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D +S+ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ V
Sbjct: 293 LHWVD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEI----CLGGGIIE 362


>gi|161936317|ref|YP_129360.2| tRNA-specific 2-thiouridylase MnmA [Photobacterium profundum SS9]
          Length = 371

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 197/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEE---YCSAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY R      +    +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPKMLRGVDSNKDQSYFLYTLSHEQIARSLFPVGEL 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G I   + G+++G
Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIG 235

Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
            H G++ +T+GQR+GL       G  + +  +VV  D   + +IVG       L+ + + 
Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLV 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
             +++W+        + +   C VK R  Q+ +P  +   DD  + V F++ ++ V  GQ
Sbjct: 296 ASQLDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+++      LGGGII 
Sbjct: 352 SAVFYSNEI----CLGGGIIE 368


>gi|157375020|ref|YP_001473620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sediminis HAW-EB3]
 gi|189040509|sp|A8FUG9|MNMA_SHESH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157317394|gb|ABV36492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sediminis HAW-EB3]
          Length = 372

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 202/398 (50%), Gaps = 37/398 (9%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + E T +N         + +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 1   MALIEPTAIN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 52  DE---YCAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      L AD +A GHY+R       D   +  M R  D  +DQSYFL+ 
Sbjct: 109 NKEIKFKAFLEFADDILDADYIAMGHYVRRS-----DESGQSQMLRGRDGNKDQSYFLYT 163

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D +       
Sbjct: 164 LSHEQISRSLFPVGELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLSTFLP-- 221

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV-- 292
           A  G+I    G+I+G+H G++ +T+GQR+GLG+        +P +VV  + + + ++V  
Sbjct: 222 AQPGNIETAEGEIIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281

Query: 293 -GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYV 350
            G    L     Y  +++W+         +DG +  VK R  Q  V   +    DD + V
Sbjct: 282 GGHHPRLMSVGFYADQLHWVD----RKGPIDGAQITVKTRYRQRDVACTLTYEGDDRIKV 337

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            F++    V  GQ+ VFY ++      LGGGII    R
Sbjct: 338 IFDEPVAAVTPGQSAVFYDAE----LCLGGGIIDSLIR 371


>gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST196]
 gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST196]
          Length = 376

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 200/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P++ RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++   A+   G C A +D 
Sbjct: 6   MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A E GL  A K DS  ICF+ +  +   +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKGFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      F C  K R  Q    V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKAKE----KEFTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I     S    + L
Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375


>gi|205822155|sp|Q131Q8|MNMA_RHOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/401 (55%), Positives = 282/401 (70%), Gaps = 12/401 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR    DDG   R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGS--RALICAADRDRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV L
Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG +LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR++
Sbjct: 238 NGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401
            +   +ARVLGGG I  +         R DA   +L ++ G
Sbjct: 358 DAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 398


>gi|331682639|ref|ZP_08383258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H299]
 gi|331080270|gb|EGI51449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H299]
          Length = 368

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|94989481|ref|YP_597582.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS9429]
 gi|94993368|ref|YP_601467.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS2096]
 gi|94542989|gb|ABF33038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS9429]
 gi|94546876|gb|ABF36923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS2096]
          Length = 379

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 9   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379


>gi|261856534|ref|YP_003263817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothiobacillus neapolitanus c2]
 gi|261837003|gb|ACX96770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothiobacillus neapolitanus c2]
          Length = 377

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 196/380 (51%), Gaps = 20/380 (5%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K P+D RV+V +SGGVDSSV A  L   GY V G+ ++ +      +    C A  D+ D
Sbjct: 7   KRPQDTRVIVGLSGGVDSSVAALRLIEAGYQVEGLFMKNWEGDDNDE---YCAAKADMLD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V D + +  +  ++ + + + V   F   Y AG TP P + CNR +KF   L   R 
Sbjct: 64  ALSVADRLGIEFHFVNFAQDYWDRVFAHFLDEYRAGRTPNPDILCNREIKFRAFLDHART 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R +  + DD      + + +D  +DQSYFL A +++QL    FP+G+M
Sbjct: 124 LGADYIATGHYARVQHALPDDS-GETCLLKGLDANKDQSYFLHALSREQLASALFPIGEM 182

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A + G   A K DS  ICF+ + ++ + +K      A  GDIV ++GQ++G+
Sbjct: 183 EKPEVRRIAEQAGFKTATKKDSTGICFIGERRFSEFLKTYLP--AQPGDIVTVDGQVVGQ 240

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +TIGQR+GLG+        +P +V   +   + +IV       +L    +   +
Sbjct: 241 HQGLMYHTIGQRQGLGIGGLRDQGDQPWYVAGKNLGDNTLIVAQGQDHPALFAPALRAGQ 300

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           I+W+ D           +   KIR  Q   P  V   + D + V F++ +  +  GQ+ V
Sbjct: 301 IHWINDPTKLVGPY-PLRLTAKIRYRQPDQPCTVMTISKDQLQVVFDQPQRAITPGQSIV 359

Query: 367 FYTSDSNEARVLGGGIISGS 386
           FY  D      LGG +I  +
Sbjct: 360 FYHGDV----CLGGAVIEEA 375


>gi|205829103|sp|Q1J988|MNMA_STRPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829104|sp|Q1JJD5|MNMA_STRPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|205822040|sp|A9MG80|MNMA_SALAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRV-----DINGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSSGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +       C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLSCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|261252577|ref|ZP_05945150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio orientalis CIP 102891]
 gi|260935968|gb|EEX91957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio orientalis CIP 102891]
          Length = 378

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 197/382 (51%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           L AD +A GHY+R      ++     +  M R +D  +DQSYFL+  +  Q+    FP+G
Sbjct: 124 LDADYIAMGHYVRRTFPTAEELAAGEKPKMLRGLDGNKDQSYFLYTLSSDQVARSLFPVG 183

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E  L  A K DS  ICF+ + K+ D + R     A  G+I    G+++
Sbjct: 184 ELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGKVI 241

Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           G+HNG++ +T+GQR+GL +          +P FV   D   + +I         L+   +
Sbjct: 242 GQHNGLMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPMLKSQGL 301

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+      DA+ +  +C VK R  Q  +P  +   DD  + V F++ +V V  G
Sbjct: 302 IASQLHWVD----RDAIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPG 357

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  +      LGGGII 
Sbjct: 358 QSAVFYKDEV----CLGGGIIE 375


>gi|306826439|ref|ZP_07459751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
 gi|304431369|gb|EFM34366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
          Length = 378

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 8   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 65  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 125 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 180

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 181 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 238

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 239 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 299 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 354

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 355 DG----KECLGGGMIDMAYKNGQPCQYI 378


>gi|222153939|ref|YP_002563116.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus uberis 0140J]
 gi|254811465|sp|B9DWD3|MNMA_STRU0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222114752|emb|CAR43910.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus uberis 0140J]
          Length = 373

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 198/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F S Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLSEYKAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + R     D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVRR----DEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V    +   V F++ +  +  GQA VFY
Sbjct: 294 HFTRDMPSE----FTLECTAKFRYRQPDSKVTVYVKGEHAEVVFDEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
            ++      LGGGII  + +     + +
Sbjct: 350 DAE----ECLGGGIIDMAFKDGVACQYI 373


>gi|153950153|ref|YP_001400589.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
           31758]
 gi|205828987|sp|A7FH61|MNMA_YERP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152961648|gb|ABS49109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis IP 31758]
          Length = 371

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ++G+
Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGK 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D +S+ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+        V   F+C VK R  Q  +P  V   DD  V V F+     V  GQ+ V
Sbjct: 293 LHWVD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEI----CLGGGIIE 362


>gi|260779096|ref|ZP_05887988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605260|gb|EEX31555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 373

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 190/381 (49%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   DNSKKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       D   +  M R +D  +DQSYFL+  +  Q+    FP+G++
Sbjct: 124 LDADYIAMGHYVRRTF---PDNGEKPQMLRGLDGNKDQSYFLYTLSSDQIARSLFPVGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ D + R     A  G I    G+++G 
Sbjct: 181 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P +V   D   + +I         L+   +  
Sbjct: 239 HQGLMYHTLGQRKGLHIGGQKGGGGNEDPWYVADKDLKRNVLIAVQGAEHPLLKSQGLIA 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + +    +C VK R  Q  +P  +   DD  + V F+  +V V  GQ+
Sbjct: 299 SQLHWVD----REIIKAPLQCSVKTRYRQTDIPCTIIPIDDENIKVIFDDPQVAVTPGQS 354

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            VFY  D      LGGGII  
Sbjct: 355 AVFYKDDV----CLGGGIIEK 371


>gi|239994884|ref|ZP_04715408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonas macleodii ATCC 27126]
          Length = 369

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 196/383 (51%), Gaps = 28/383 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ D
Sbjct: 5   ESNASKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TR 134
           A+ V D + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L     
Sbjct: 62  AQAVADKLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY+R R   G     +  M R +D  +DQSYFL+   ++ +    FP+GD
Sbjct: 122 DLGADYIATGHYVRRREVDG-----KWQMLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGD 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL   DK DS  ICF+ + K+ D + R     A  G I    G+ +G
Sbjct: 177 IEKPLVRKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLP--AQPGVIETAEGEEIG 234

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +H G++ +T+GQR+GL +        +P +VV  D   + +IVG       L    +  +
Sbjct: 235 QHEGLMYHTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGADHPRLYSKGLVAK 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQAC 365
           +++W+        + +  +  VK R  Q  +P  +    DD + V F++ +  V  GQ+ 
Sbjct: 295 QLHWVD----RKTITEPVRAVVKTRYRQADIPCTITPTQDDTIEVIFDEPQKAVTPGQSA 350

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY+ +      LGGGII    R
Sbjct: 351 VFYSDEV----CLGGGIIESYIR 369


>gi|161950103|ref|YP_403605.2| tRNA-specific 2-thiouridylase MnmA [Shigella dysenteriae Sd197]
 gi|309788203|ref|ZP_07682809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1617]
 gi|205821961|sp|Q32EZ1|MNMA_SHIDS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|308924055|gb|EFP69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1617]
          Length = 368

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAKSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSIGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|188494195|ref|ZP_03001465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 53638]
 gi|188489394|gb|EDU64497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 53638]
          Length = 368

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|304407559|ref|ZP_07389211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343510|gb|EFM09352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus curdlanolyticus YK9]
          Length = 376

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 192/378 (50%), Gaps = 25/378 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK++GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MVKTKAETRVVVGMSGGVDSSVTALLLKQEGYDVIGIFMKNWDD---TDEFGHCTAEEDA 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVCD I + +Y  ++E+++ + V   F   Y  G TP P V CNR +KF + L   
Sbjct: 58  EDVRRVCDQIGIPYYTVNFEQQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGEFLQKA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD LATGHY R              + R +D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 IDLGADYLATGHYARVERTA----NGETKLLRGVDSNKDQTYFLHQLDQSQLAKAMFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           D+ K  VR +A E GL  A K DS  +CF+ +  +   +       A  G ++ L +G+ 
Sbjct: 174 DLPKPEVRRIAEEAGLATAKKKDSTGVCFIGERNFKQFLSGYLP--AQPGPMIDLRSGET 231

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306
            G+H+G++ YT+GQR+     G   GEP FV   D   + + V   +S   L   R+   
Sbjct: 232 KGQHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGDSHARLYSERLTAE 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
            INW+     E  +     C  K R  Q    V V  + DG   V F++ +  +  GQA 
Sbjct: 292 GINWISPNRPEGPIT----CTAKFRYRQADQGVTVTLSADGMAEVVFDQPQKAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY  D      LGGG I
Sbjct: 348 VFYDGDI----CLGGGTI 361


>gi|117920194|ref|YP_869386.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. ANA-3]
 gi|166235083|sp|A0KW11|MNMA_SHESA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117612526|gb|ABK47980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. ANA-3]
          Length = 372

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 200/385 (51%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++      +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+
Sbjct: 4   IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A++MGL   DK DS  ICF+ + K+ + +       A  G+I    G+I
Sbjct: 177 GELEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETAEGEI 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G+H G++  T+GQR+GLG+        +P +VV  D   + ++V   G    L  + + 
Sbjct: 235 IGKHQGLMYQTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGML 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
           + +++W+          +G +  VK R  Q  +P  +   +D+ + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  +      LGGGII    R
Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371


>gi|308070334|ref|YP_003871939.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus polymyxa E681]
 gi|305859613|gb|ADM71401.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus polymyxa E681]
          Length = 373

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/383 (36%), Positives = 202/383 (52%), Gaps = 24/383 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVC+ I++ +Y  ++E+ + + V   F   Y AG TP P V CNR +KF + L+  
Sbjct: 58  EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +    V +DG     + R +D  +DQ+YFL A +Q QL    FP+G
Sbjct: 118 LDLGADYVATGHYAQ---VVEEDG--HFTLLRGVDSNKDQTYFLNALSQTQLSRAMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
            + K  VR +A   GL  A K DS  +CF+ +  + + +       A  GD+V +  G++
Sbjct: 173 HLPKPEVRKIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLP--AKGGDMVDIATGEV 230

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            GRH+G++ YT+GQR+     G   GEP FV   D   + + V       SL    +   
Sbjct: 231 KGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLIAT 290

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           ++NW+     +      F+C  K R  Q    V +Q   DG V+V F+  +  +  GQA 
Sbjct: 291 DVNWIEGA--DTRPTSEFRCTAKFRYRQPDQQVTLQWLADGTVHVIFDVHQKAITPGQAV 348

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  +    R LGGG I   ++
Sbjct: 349 VFYDGE----RCLGGGTIDKVEK 367


>gi|157962359|ref|YP_001502393.1| tRNA-specific 2-thiouridylase MnmA [Shewanella pealeana ATCC
           700345]
 gi|157847359|gb|ABV87858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella pealeana ATCC 700345]
          Length = 398

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 28/380 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 37  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 93

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L A
Sbjct: 94  CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 153

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY+R R     D      M R +D  +DQSYFL+    +Q+    FP+G++ K 
Sbjct: 154 DYIAMGHYVRRR-----DIDGTSQMLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKS 208

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G H G
Sbjct: 209 EVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQG 266

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   + +IVG       L  + +   +++W
Sbjct: 267 LMYHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPRLMSNGLVANQLHW 326

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G K  VK R  Q  VP  V  + DD + V F++    V  GQ+ VFY 
Sbjct: 327 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 382

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGGII    R 
Sbjct: 383 GEI----CLGGGIIDALIRD 398


>gi|168239141|ref|ZP_02664199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738212|ref|YP_002114241.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713714|gb|ACF92935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288113|gb|EDY27500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 368

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +NPK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSENPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|170768217|ref|ZP_02902670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia albertii TW07627]
 gi|170122983|gb|EDS91914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia albertii TW07627]
          Length = 368

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVNGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|50121369|ref|YP_050536.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium atrosepticum
           SCRI1043]
 gi|71658013|sp|Q6D4E9|MNMA_ERWCT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49611895|emb|CAG75344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 368

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 194/379 (51%), Gaps = 29/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R MD  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++    +G
Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +H G++ +T+GQR+GLG+        +P +VV  D  ++ + V        L  + +  +
Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           +++W+        +    +C VK R  Q  +   V    DD + V F++    V  GQ+ 
Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADISCTVTPLGDDRITVRFDEPFAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  D      LGGGII 
Sbjct: 349 VFYLDDV----CLGGGIIE 363


>gi|59712391|ref|YP_205167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri ES114]
 gi|71658019|sp|Q5E3W7|MNMA_VIBF1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|59480492|gb|AAW86279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri ES114]
          Length = 374

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           L AD +A GHY+R      ++     +  M R +D  +DQSYFL+  + +Q+    FP+G
Sbjct: 120 LDADFIAMGHYVRRTFPTAEEIANGIKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E GL  A K DS  ICF+ + K+ + + +     A  G+I    G+++
Sbjct: 180 ELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237

Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLEVHRI 303
           G+H G++ +T+GQR+GL +          +P FV   D   + +  + G     L+   +
Sbjct: 238 GQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGL 297

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+        +     C VK R  Q  +P  +   DD  + V F++ ++ V  G
Sbjct: 298 LASQLHWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPG 353

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  +      LGGGII 
Sbjct: 354 QSAVFYLDEV----CLGGGIIE 371


>gi|197336343|ref|YP_002156606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri MJ11]
 gi|229487426|sp|B5FG83|MNMA_VIBFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|197317833|gb|ACH67280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri MJ11]
          Length = 374

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           L AD +A GHY+R      ++     +  M R +D  +DQSYFL+  + +Q+    FP+G
Sbjct: 120 LDADFIAMGHYVRRTFPTAEEIANGVKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E GL  A K DS  ICF+ + K+ + + +     A  G+I    G+++
Sbjct: 180 ELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237

Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLEVHRI 303
           G+H G++ +T+GQR+GL +          +P FV   D   + +  + G     L+   +
Sbjct: 238 GQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGL 297

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+        +     C VK R  Q  +P  +   DD  + V F++ ++ V  G
Sbjct: 298 LASQLHWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPG 353

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  +      LGGGII 
Sbjct: 354 QSAVFYLDEV----CLGGGIIE 371


>gi|39546313|ref|NP_460204.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991976|ref|ZP_02573075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168264253|ref|ZP_02686226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197263918|ref|ZP_03163992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200391023|ref|ZP_03217634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|24638322|sp|Q8ZPZ4|MNMA_SALTY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|197242173|gb|EDY24793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199603468|gb|EDZ02014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205329792|gb|EDZ16556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205347303|gb|EDZ33934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|267993013|gb|ACY87898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301157775|emb|CBW17268.1| Probable tRNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912222|dbj|BAJ36196.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223852|gb|EFX48915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
          Length = 368

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  +   NDD + V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALNDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|322833617|ref|YP_004213644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rahnella sp. Y9602]
 gi|321168818|gb|ADW74517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rahnella sp. Y9602]
          Length = 369

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEE---YCTAATDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D      + R +D  +DQSYFL+    +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRQ-----DINGVSHLLRGIDGNKDQSYFLYTLGHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I  ++GQ++G+
Sbjct: 175 EKPEVRRIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIKSVDGQVMGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP + V  D  ++ + V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGQKDGSEEPWYTVEKDVENNILYVAQGHEHPRLMNVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +     C VK R  Q+ +P  V    DD + V F+     V  GQ+ V
Sbjct: 293 LHWVD----RKTLTGPLTCTVKTRYRQEDIPCVVTPLGDDRIEVRFDAPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 349 FYLGEV----CLGGGVIE 362


>gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 379

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 194/387 (50%), Gaps = 26/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D  +
Sbjct: 10  SNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAK 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 67  VADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R +     D      + R +D  +DQ+YFL     + L  + FPLG+M K 
Sbjct: 127 DYIATGHYARLQH----DEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKP 182

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA   GL  A K DS  ICF+ +  + + +       A  G ++  +GQ+ G H G
Sbjct: 183 DVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAG 240

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           ++ YTIGQRRGLG+       EP FVV  D   + + VG       L    +   +++++
Sbjct: 241 LMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFV 300

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369
            D    + + + F    K R  Q    V V  NDD   V V F+     +  GQA VFY 
Sbjct: 301 TD----EDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFYN 356

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396
            +      LG G+I  +   + V + +
Sbjct: 357 GE----ECLGSGMIDAAYNDERVLQYV 379


>gi|205822022|sp|A8H5M1|MNMA_SHEPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 28/380 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L A
Sbjct: 67  CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY+R R     D      M R +D  +DQSYFL+    +Q+    FP+G++ K 
Sbjct: 127 DYIAMGHYVRRR-----DIDGTSQMLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKS 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++G H G
Sbjct: 182 EVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQG 239

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   + +IVG       L  + +   +++W
Sbjct: 240 LMYHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPRLMSNGLVANQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G K  VK R  Q  VP  V  + DD + V F++    V  GQ+ VFY 
Sbjct: 300 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 355

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGGII    R 
Sbjct: 356 GEI----CLGGGIIDALIRD 371


>gi|229822980|ref|ZP_04449050.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271]
 gi|229787793|gb|EEP23907.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271]
          Length = 375

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/389 (34%), Positives = 198/389 (50%), Gaps = 24/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   STNGKRVVLGMSGGVDSSVAALLLKEQGYEVIGLFMKNWDD---TDENGHCTATEDYQDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V + I + +Y  ++E+ + + V   F   Y AG TP P V CN+ VKF   L    +L
Sbjct: 59  VKVAEKIGIPYYSVNFEKEYWDRVFEYFLREYRAGRTPNPDVMCNKEVKFKAFLDYAMEL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +A GHY RS      D      + R +D  +DQ+YFL   +Q QL    FPLG ++
Sbjct: 119 GADYIAMGHYARSER----DENGVVHLLRGLDNNKDQTYFLSQLSQAQLQKALFPLGHLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA E GL  A K DS  +CF+ +  + + +          G +V L+GQ+ G H
Sbjct: 175 KSEVRALAEEAGLATAKKKDSTGVCFIGERNFNEFLSNYLPN--KPGKMVTLDGQVKGEH 232

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+       EP FV+  D+ +  + VG      +L    +   E++
Sbjct: 233 MGLMYYTIGQRQGLGIGGGGTSNEPWFVIGKDQTTQTLYVGQGFHHPNLYSDYLTASEVS 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +    L +  V + F+C  K R  Q  + V V+ + D     V F++    +  GQA VF
Sbjct: 293 FTAPNLSD--VPEEFRCTAKFRYRQQDIGVTVKLSQDKTQATVMFDEPVRAITPGQAVVF 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + +     + +
Sbjct: 351 YDG----QECLGGGLIDAAYKEGVQRQYV 375


>gi|268589250|ref|ZP_06123471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rettgeri DSM 1131]
 gi|291315435|gb|EFE55888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rettgeri DSM 1131]
          Length = 366

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 201/379 (53%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 2   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDTE---YCSAAADLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 59  QAVCDKLGIELHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 119 LGADYIATGHYVRRR-----DIDGKSQLLRGLDGNKDQSYFLYTLSHEQVAKSLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV ++G+ +G+
Sbjct: 174 EKPEVRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQ 231

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++
Sbjct: 232 HEGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           ++W+        + +  +C VK R  Q  +P  +   +DD + V F+     V  GQ+ V
Sbjct: 292 LHWVD----RKTMTEPLRCVVKTRYRQADIPCTITPLSDDRIEVAFDYPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGGII  
Sbjct: 348 FYIDEV----CLGGGIIEA 362


>gi|311279962|ref|YP_003942193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae SCF1]
 gi|308749157|gb|ADO48909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae SCF1]
          Length = 369

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G  +G 
Sbjct: 175 EKPQVRKIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGE 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILVVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+      + V    +C VK R  Q  +P  V   DD  + V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVTGTLRCTVKTRYRQTDIPCTVTAQDDSRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYLGEV----CLGGGIIE 362


>gi|26107782|gb|AAN79981.1|AE016759_255 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli CFT073]
          Length = 383

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 203/394 (51%), Gaps = 28/394 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+   A + N +    +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     
Sbjct: 1   MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 61  EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117

Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      L AD +ATGHY+R       DGK R  + R +D  +DQSYFL+ 
Sbjct: 118 NKEIKFKAFLEFAAEDLCADYIATGHYVRRAXV---DGKSR--LLRGLDSNKDQSYFLYT 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+   + R     
Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G I+ ++G  +G H G++ +T+GQR+GLG+        EP +VV  D  ++ +IV  
Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
                 L    +  ++++W+      +      +C VK R  Q  +P  V+  D D + V
Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            F++    V  GQ+ VFY  +      LGGGII 
Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376


>gi|90413208|ref|ZP_01221203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum 3TCK]
 gi|90325760|gb|EAS42218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum 3TCK]
          Length = 371

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 196/381 (51%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEE---YCSAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY R      +    +  M R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPKMLRGVDGNKDQSYFLYTLSHEQIARSLFPVGEL 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  G I   + G+++G
Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIG 235

Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
            H G++ +T+GQR+GL       G  + +  +VV  D   + +IVG       L+ + + 
Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLV 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363
             +++W+        +     C VK R  Q+ +P  +   DD  + V F++ ++ V  GQ
Sbjct: 296 ASQLDWVD----RQPIRQPMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+++      LGGGII 
Sbjct: 352 SAVFYSNEI----CLGGGIIE 368


>gi|226944910|ref|YP_002799983.1| tRNA-specific 2-thiouridylase MnmA [Azotobacter vinelandii DJ]
 gi|226719837|gb|ACO79008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Azotobacter vinelandii DJ]
          Length = 372

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 26/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +P   RV+V MSGGVDSSV A LL + GY V G+ ++ +     ++    C A +D+ DA
Sbjct: 3   DPAHTRVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VCD I +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 60  QAVCDRIGMRLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD++ATGHY+R R     D + R  + + +D  +DQSYFL A   +QL    FP+G+++
Sbjct: 120 GADMIATGHYVRRR-----DAEDRTELLKGLDPNKDQSYFLHAVASEQLAKSLFPVGELE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K +VR +A   GL  A K DS  ICF+ + ++ D +K+     A  G I    G+++G+H
Sbjct: 175 KPAVRAIAELHGLATARKKDSTGICFIGERRFGDFLKQYLP--ARPGPIETTEGKVIGQH 232

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           +G++ +TIGQR+GLG+        +P +V+  D   + +IVG       L    ++  E+
Sbjct: 233 HGLMYHTIGQRQGLGIGGMKNATEDPWYVLAKDLTRNVLIVGQGNQHPWLFSRALHTSEM 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+    F        +   K+R  Q      +++ D G  V F++ +  V  GQ+ V Y
Sbjct: 293 FWVNPPDFPLP----RRLAAKVRYRQGDQTCTLEKTDQGFRVLFDEPQRAVTPGQSVVLY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  ++     +E  
Sbjct: 349 DGDV----CLGGGVIETAEPWKREDEQP 372


>gi|322412887|gb|EFY03795.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 373

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 192/381 (50%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DEDGVVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASIV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E       KC  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREVPEE----FTLKCTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             +      LGGG+I  + R 
Sbjct: 350 DGE----ECLGGGMIDMAYRD 366


>gi|221134862|ref|ZP_03561165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola sp. HTCC2999]
          Length = 372

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 195/382 (51%), Gaps = 28/382 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P D +V+V MSGGVDSSV A LLK+ G+ V GV ++ +      +    C A +D+ DA 
Sbjct: 9   PADTKVIVGMSGGVDSSVSAYLLKQQGFQVEGVFMKNWEEDDNDE---YCAAAEDLADAH 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQL 136
            V D + ++ +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L
Sbjct: 66  AVADKLGITLHSINFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEYAAEDL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY+            +  M R  D  +DQSYFL+  + + +    FP+G ++
Sbjct: 126 GADYIATGHYVSRAKNGD-----KWEMLRGFDQNKDQSYFLYTLSHEHIAKTLFPIGHLE 180

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K +VR++A   GL   DK DS  ICF+ + K+ D + +     A  GDI    G+ +G H
Sbjct: 181 KPTVREIAEAQGLVTHDKKDSTGICFIGERKFTDFLSQYLP--AQPGDIYTFEGEKIGEH 238

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ +T+GQR+GL +        EP +VV  D  ++R+IVG       L  + +  +++
Sbjct: 239 QGLMYHTLGQRKGLLIGGTRDHGDEPWYVVDKDMTNNRLIVGQGANHPRLYSNGLIAKQL 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           +W+       A+ +  +  VK R  Q  +   V   +DD V V F+  +  V  GQ+ VF
Sbjct: 299 DWVS----RTALTEPTRMTVKTRYRQADIDCIVTPIDDDSVEVIFDTPQKAVTPGQSAVF 354

Query: 368 YTSDSNEARVLGGGIISGSKRS 389
           Y         LGGGII    RS
Sbjct: 355 YQG----PVCLGGGIIESYIRS 372


>gi|167464004|ref|ZP_02329093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382960|ref|ZP_08056792.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153080|gb|EFX45538.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 364

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 190/372 (51%), Gaps = 25/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R+++ MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D RRV
Sbjct: 4   NKRIILGMSGGVDSSVSALLLKEQGYDVIGVFMKNWDD---TVEFGHCTAEEDAEDVRRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  Y  ++E+++   V   F + Y  G TP P V CNR +KF + L     LG D
Sbjct: 61  CDQVGIPFYTVNFEKQYMEKVFSYFLNEYKRGRTPNPDVMCNREIKFGEFLQKGLDLGGD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R     G+      ++ R  D  +DQ+YFL A  Q QL    FP+G + K  
Sbjct: 121 YIATGHYARVEERNGE-----YVLLRGNDPNKDQTYFLHALNQFQLSKAMFPIGHLPKPE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E GL  A K DS  +CF+ +  + + +       A  G++  L G++ GRH+G+
Sbjct: 176 VRKLAEEAGLATAKKKDSTGVCFIGERNFKEFLSNYLP--AKPGEMRTLEGEVKGRHDGL 233

Query: 260 INYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           + YT+GQR+     G   GEP FV   D  ++ + V       SL    +   ++NW+  
Sbjct: 234 MYYTLGQRQGLGIGGSGTGEPWFVADKDLQNNILYVVQGEKHPSLYSTGLSATDVNWISP 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDS 372
              E      ++C  K R  Q    V +    D+   V F++ +  V  GQ+ VFY  + 
Sbjct: 294 VKPEGQ----YRCTAKFRYRQPDQGVTLTMGADNTCEVIFDEPQKAVTPGQSVVFYDGEV 349

Query: 373 NEARVLGGGIIS 384
                LGGGII 
Sbjct: 350 ----CLGGGIID 357


>gi|205822138|sp|Q21AM9|MNMA_RHOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 400

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 212/395 (53%), Positives = 279/395 (70%), Gaps = 4/395 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D R+VVAMSGGVDSS  AALLK +GYDV+G+TLQLY+   A  RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V D I + HYV DYE RF+ +VI  FA+SYA GETP+PC++CNR++KF D
Sbjct: 62  AGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLS  R+LGA  LATGHY+ SR          R +    D +RDQSYFLFATT+ QL  L
Sbjct: 122 LLSTARELGASALATGHYVSSRRLAD----GSRALVCASDADRDQSYFLFATTRDQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR+ GL +ADK DSQDICFV  G+Y DVV R+       G+IV L
Sbjct: 178 RFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPRE+L + RI LR++
Sbjct: 238 DGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GD   + AV DG + FV++RS++ P P +++  D G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
            + + +ARVLGGG I  +    A + +L       
Sbjct: 358 DAPAGQARVLGGGFIKSATPRAAGKSALRGAPASR 392


>gi|28378785|ref|NP_785677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum WCFS1]
 gi|254556990|ref|YP_003063407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum JDM1]
 gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258513|sp|Q88V96|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28271622|emb|CAD64528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum WCFS1]
 gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum JDM1]
 gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 374

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 194/387 (50%), Gaps = 26/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++    +   G C A +D  D  +
Sbjct: 5   SNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGA
Sbjct: 62  VADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R +     D      + R +D  +DQ+YFL     + L  + FPLG+M K 
Sbjct: 122 DYIATGHYARLQH----DEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA   GL  A K DS  ICF+ +  + + +       A  G ++  +GQ+ G H G
Sbjct: 178 DVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAG 235

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           ++ YTIGQRRGLG+       EP FVV  D   + + VG       L    +   +++++
Sbjct: 236 LMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369
            D    + + + F    K R  Q    V V  NDD   V V F+     +  GQA VFY 
Sbjct: 296 TD----EDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFYN 351

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396
            +      LG G+I  +   + V + +
Sbjct: 352 GE----ECLGSGMIDAAYNDERVLQYV 374


>gi|116334036|ref|YP_795563.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus brevis ATCC 367]
 gi|122269280|sp|Q03QJ0|MNMA_LACBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116099383|gb|ABJ64532.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus brevis
           ATCC 367]
          Length = 375

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 197/389 (50%), Gaps = 27/389 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RVVV MSGGVDSSVVA  LK+ GYDVIGV ++ ++    +   G C A +D  D
Sbjct: 2   QDNSQTRVVVGMSGGVDSSVVALRLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L    +
Sbjct: 59  VAKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYALE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY +    +  D      + R +D  +DQ+YFL   + +QL  + FP+GD+
Sbjct: 119 LGADYIATGHYAQ----LTRDEAGHAHLMRAVDQNKDQTYFLSQLSTEQLDRVMFPIGDL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILG 254
            K  VR++A+E GL  A+K DS  ICF+ + G + D +K      A  GD++ ++G+I G
Sbjct: 175 VKPQVREIAKEAGLATAEKKDSMGICFIGEKGHFKDFLKTYLP--AKAGDMMTVDGEIKG 232

Query: 255 RHNGIINYTIGQRR----GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307
            H G++ YTIGQR+    G      EP FV+  D   + + VG       L    +   +
Sbjct: 233 HHAGLMYYTIGQRKGLGIGGDGIDNEPWFVIGKDLQKNILYVGKGYHNPHLYATHLSASD 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365
           I+W+            F C  K R  Q    V V  NDDG  V V+F+     +  GQA 
Sbjct: 293 IHWVNTIDR----GSDFHCTAKFRYRQKDTGVTVHLNDDGQQVTVEFDDPARAITPGQAV 348

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEE 394
           VFY  D      LG  II  +   +   +
Sbjct: 349 VFYNGD----ECLGSAIIDAAYNQERELQ 373


>gi|188534099|ref|YP_001907896.1| tRNA-specific 2-thiouridylase MnmA [Erwinia tasmaniensis Et1/99]
 gi|188029141|emb|CAO97013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia tasmaniensis Et1/99]
          Length = 369

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 196/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 2   SNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 59  QAVCDKLGIYLHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+    +Q+    FP+G++
Sbjct: 119 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+
Sbjct: 174 AKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTEFLSRYLP--AQPGPILSVDGDNVGQ 231

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANDDPWYVVDKDVANNVLVVAQGHEHPRLMSTGLIAQQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+      D++    +C VK R  Q  +P  V   D + + V F+     V  GQ+ V
Sbjct: 292 LHWVD----RDSLTTPLRCTVKTRYRQQDIPCTVTPVDAERIEVRFDFPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 348 FYLDEV----CLGGGIIE 361


>gi|24380473|ref|NP_722428.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans UA159]
 gi|30173426|sp|Q8DRS4|MNMA_STRMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24378503|gb|AAN59734.1|AE015035_3 putative tRNA [Streptococcus mutans UA159]
          Length = 373

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R  D  +DQ+YFL   +Q+QL  + FPLG ++
Sbjct: 120 GADYVATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A + GL  A K DS  ICF+ +  + + +       A +G ++ ++G+ +G H
Sbjct: 176 KPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           NG++ YTIGQR G+G+         P FVV  D + + + VG     ++L    +   ++
Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +            C  K R  Q    V V+ N D   V F++ +  +  GQA VFY
Sbjct: 294 HFTQNM----PDKFTLNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGGG+I  + + + + + +
Sbjct: 350 DGD----ECLGGGLIDNAYQEEKICQYI 373


>gi|38703944|ref|NP_309632.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367616|ref|NP_287347.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7
           EDL933]
 gi|168749736|ref|ZP_02774758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756472|ref|ZP_02781479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168762550|ref|ZP_02787557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771001|ref|ZP_02796008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776054|ref|ZP_02801061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168782470|ref|ZP_02807477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168787608|ref|ZP_02812615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|168800455|ref|ZP_02825462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|195938765|ref|ZP_03084147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808537|ref|ZP_03250874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814775|ref|ZP_03255954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208822542|ref|ZP_03262861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209397379|ref|YP_002270050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217328487|ref|ZP_03444569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254792593|ref|YP_003077430.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227234|ref|ZP_05941515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258759|ref|ZP_05951292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282168|ref|YP_003498986.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Escherichia coli O55:H7 str. CB9615]
 gi|24638314|sp|Q8X735|MNMA_ECO57 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187768490|gb|EDU32334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016000|gb|EDU54122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000055|gb|EDU69041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356337|gb|EDU74756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189360141|gb|EDU78560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189367117|gb|EDU85533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189372405|gb|EDU90821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|189377259|gb|EDU95675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728338|gb|EDZ77939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731423|gb|EDZ80111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208738027|gb|EDZ85710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209158779|gb|ACI36212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217318914|gb|EEC27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254591993|gb|ACT71354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290762041|gb|ADD56002.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Escherichia coli O55:H7 str. CB9615]
 gi|320187860|gb|EFW62530.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320637601|gb|EFX07401.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           G5101]
 gi|320643161|gb|EFX12362.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str.
           493-89]
 gi|320648098|gb|EFX16774.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H
           2687]
 gi|320653931|gb|EFX22005.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659411|gb|EFX26980.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664548|gb|EFX31699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339412|gb|EGD63224.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           1044]
 gi|326341465|gb|EGD65256.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli O157:H7 str. 1125]
          Length = 368

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|313889493|ref|ZP_07823139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122105|gb|EFR45198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 373

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DKSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALNL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D   R  M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A    L  A K DS  ICF+ +  +   + +     A +G +  ++G+ +G H
Sbjct: 176 KSQVREIAARADLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMKTVDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +    +
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNVLYVGQGFYHESLMSTSLDASMV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  D   E       +C  K R  Q    V V+ + D   V F + +  +  GQA VFY
Sbjct: 294 HFTHDMPKE----FTLECTAKFRYRQPDCKVSVKVSGDKAKVLFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
            +       LGGGII  + +   V + +
Sbjct: 350 DN----QECLGGGIIDQAYKDGLVCQYI 373


>gi|114793688|pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Initial Trna Binding State
 gi|114793689|pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Initial Trna Binding State
 gi|114793692|pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Pre-Reaction State
 gi|114793694|pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Adenylated Intermediate State
 gi|114793695|pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Adenylated Intermediate State
          Length = 380

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 18  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 74

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 75  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 134

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 135 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 189

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 190 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 247

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 248 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 307

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 308 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 363

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 364 EV----CLGGGIIE 373


>gi|16760109|ref|NP_455726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142120|ref|NP_805462.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413780|ref|YP_150855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614531|ref|YP_001588496.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168233116|ref|ZP_02658174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168244308|ref|ZP_02669240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168467196|ref|ZP_02701038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822341|ref|ZP_02834341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194444280|ref|YP_002040490.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449928|ref|YP_002045236.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472097|ref|ZP_03078081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249278|ref|YP_002146807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362703|ref|YP_002142340.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245672|ref|YP_002215901.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204930753|ref|ZP_03221626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353032|ref|YP_002226833.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857259|ref|YP_002243910.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213428090|ref|ZP_03360840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213580464|ref|ZP_03362290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213612639|ref|ZP_03370465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213648222|ref|ZP_03378275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|224584258|ref|YP_002638056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|24638320|sp|Q8Z7G9|MNMA_SALTI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658018|sp|Q5PMJ4|MNMA_SALPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816911|sp|A9N4K8|MNMA_SALPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|25298380|pir||AC0647 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502403|emb|CAD08358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137749|gb|AAO69311.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56128037|gb|AAV77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|161363895|gb|ABX67663.1| hypothetical protein SPAB_02280 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402943|gb|ACF63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408232|gb|ACF68451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194458461|gb|EDX47300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195630429|gb|EDX49055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197094180|emb|CAR59684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197212981|gb|ACH50378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197940188|gb|ACH77521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204320212|gb|EDZ05416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272813|emb|CAR37739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205332653|gb|EDZ19417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336786|gb|EDZ23550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205341217|gb|EDZ27981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|206709062|emb|CAR33395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224468785|gb|ACN46615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322616610|gb|EFY13519.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619875|gb|EFY16749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622443|gb|EFY19288.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629439|gb|EFY26216.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632935|gb|EFY29678.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636820|gb|EFY33523.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641380|gb|EFY38019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645145|gb|EFY41674.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652308|gb|EFY48664.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655660|gb|EFY51962.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660965|gb|EFY57195.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665449|gb|EFY61637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667574|gb|EFY63735.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673632|gb|EFY69734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677558|gb|EFY73622.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679777|gb|EFY75816.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687250|gb|EFY83222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193058|gb|EFZ78280.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199445|gb|EFZ84538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203633|gb|EFZ88655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208826|gb|EFZ93764.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217800|gb|EGA02515.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218889|gb|EGA03400.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226637|gb|EGA10837.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229603|gb|EGA13726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232828|gb|EGA16924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240136|gb|EGA24180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242877|gb|EGA26898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246793|gb|EGA30763.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254307|gb|EGA38124.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255573|gb|EGA39332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259407|gb|EGA43043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267003|gb|EGA50488.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272107|gb|EGA55521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 368

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|205822469|sp|A6T7K3|MNMA_KLEP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ 
Sbjct: 4   SQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137
           VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LG
Sbjct: 61  VCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K
Sbjct: 121 ADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G H 
Sbjct: 176 PQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQ 233

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++++
Sbjct: 234 GLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQLH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  +P  V   ++D + V F++    V  GQ+ VFY
Sbjct: 294 WVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFY 349

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGGII 
Sbjct: 350 LGEV----CLGGGIIE 361


>gi|326791915|ref|YP_004309736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium lentocellum DSM 5427]
 gi|326542679|gb|ADZ84538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium lentocellum DSM 5427]
          Length = 360

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 12/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV MSGGVDSSV A LLK  GY+VIG+T+Q++         G CC    V DARRV
Sbjct: 6   KKKVVVGMSGGVDSSVTAYLLKEQGYEVIGMTMQIWQEGAPEDSDGGCCGLSAVDDARRV 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  +++ HYV ++   F+  VI  F   Y    TP PC+ CNR VK+  +L    Q+GAD
Sbjct: 66  CQKLDIPHYVVNFRSDFKKHVIDYFLDEYQNARTPNPCIACNRYVKWESMLQKALQIGAD 125

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    + D+   R  + +   L +DQ+Y L+  TQ QL     PLGD  K+ 
Sbjct: 126 YIATGHYAR---VIRDEVTGRYSLKQSKTLAKDQTYALYNLTQHQLAHTLMPLGDYTKDE 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A+E+GL +A K DSQ+ICFV    Y   ++       + G+ V+ +G++LG+H GI
Sbjct: 183 VRAIAKEIGLAVATKPDSQEICFVPDNNYAKYIEEETGKKPVVGNFVNKDGKVLGKHKGI 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+++G+P FV  +++ ++ V++G  E L    +   ++N++     E  
Sbjct: 243 IHYTIGQRKGLGLSLGKPGFVQRINQKTNEVVIGDNEDLFDTTVTANQVNFMPFEHLE-- 300

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                 C  KIR +Q P P  ++  ++D +   F++ +  +  GQA V Y  D    +++
Sbjct: 301 --GEMHCLGKIRYNQAPQPCTIKMIDEDTIQCIFDEKQRAITPGQALVLYDGD----KLI 354

Query: 379 GGGII 383
           GGG I
Sbjct: 355 GGGTI 359


>gi|162139594|ref|YP_216172.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|71658017|sp|Q57QC0|MNMA_SALCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|322714225|gb|EFZ05796.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 368

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|170682526|ref|YP_001744044.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SMS-3-5]
 gi|218549144|ref|YP_002382935.1| tRNA-specific 2-thiouridylase MnmA [Escherichia fergusonii ATCC
           35469]
 gi|205816880|sp|B1LI10|MNMA_ECOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170520244|gb|ACB18422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218356685|emb|CAQ89312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia fergusonii ATCC 35469]
 gi|323967072|gb|EGB62498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M863]
 gi|323976496|gb|EGB71584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TW10509]
 gi|324113924|gb|EGC07898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia fergusonii B253]
 gi|325497565|gb|EGC95424.1| orf, hypothetical protein [Escherichia fergusonii ECD227]
 gi|327253837|gb|EGE65466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli STEC_7v]
          Length = 368

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|114563431|ref|YP_750944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella frigidimarina NCIMB 400]
 gi|122299537|sp|Q081F9|MNMA_SHEFN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114334724|gb|ABI72106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella frigidimarina NCIMB 400]
          Length = 372

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 27/385 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L+      +V+V MSGGVDSSV A LL + G++V G+ ++ +      +    C A  D+
Sbjct: 4   LNPTSNGKKVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMKNWEEDDTDE---YCAAADDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 61  KDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+
Sbjct: 121 DDILDADYIAMGHYVRRR----DNSDGSVEMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR++A+++GL   DK DS  ICF+ + K+ D +       A  GDI    G++
Sbjct: 177 GELEKHQVREIAQKLGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETSEGEV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + 
Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVAQGGNHPRLMSTGMT 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQ 363
           + +++W+          +     VK R  Q  V   +  +D D + V F++    V  GQ
Sbjct: 295 VNQLHWVD----RTGPANNSTITVKTRYRQRDVGCTLTYDDADNITVMFDEPVAAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388
           + VFY  D      LGGGII    R
Sbjct: 351 SAVFYDGDI----CLGGGIIDTLIR 371


>gi|109898694|ref|YP_661949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas atlantica T6c]
 gi|122971887|sp|Q15T93|MNMA_PSEA6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109700975|gb|ABG40895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas atlantica T6c]
          Length = 396

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 128/391 (32%), Positives = 198/391 (50%), Gaps = 29/391 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            L++ +L  N    +V+V MSGGVDSSV A +L + GY V G+ ++ +      +    C
Sbjct: 25  SLSATELASN-SQKKVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDE---YC 80

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D+ DA+ V D + +  +  ++   + + V   F   Y +G TP P + CN+ +KF 
Sbjct: 81  AAADDLKDAQAVADKLGIVLHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFK 140

Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L     +L AD +ATGHY+R R   G        M R MD  +DQSYFL+   +Q + 
Sbjct: 141 AFLEFAAEELEADYIATGHYVRRREVDG-----HWQMLRGMDDNKDQSYFLYTLGEQHVG 195

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR++A+E GL   DK DS  ICF+ + K+ D + +     A  G I 
Sbjct: 196 QTLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIE 253

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
              GQ +G+H G++ +T+GQR+GL +        +P +VV  D   + +IVG       L
Sbjct: 254 TPEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPRL 313

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV 357
             + +   +++W+             KC VK R  Q+ +   +    DG V V F++ + 
Sbjct: 314 YSNGLIANQLHWVD----RTGPTSPMKCSVKTRYRQEDIACTLTPEPDGNVRVMFDEPQK 369

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            V  GQ+ VFY ++      LGGGII    R
Sbjct: 370 AVTPGQSAVFYLNEV----CLGGGIIESYIR 396


>gi|148263558|ref|YP_001230264.1| tRNA-specific 2-thiouridylase MnmA [Geobacter uraniireducens Rf4]
 gi|205816712|sp|A5GE36|MNMA_GEOUR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146397058|gb|ABQ25691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter uraniireducens Rf4]
          Length = 375

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 158/384 (41%), Positives = 221/384 (57%), Gaps = 18/384 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCA 69
           + KN K  RVV+AMSGGVDSSV AALLK +G++VIG+++Q+++  + +  +G     CC+
Sbjct: 1   MVKNNKRKRVVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYTRFTAEEGEKFDTCCS 60

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D++DARRV + + +  YV ++EE F+N VI  F + Y  G TP PCV CN+ +KF  L
Sbjct: 61  LDDIHDARRVAEQLEIPFYVVNFEEEFQNLVIDDFVNEYLLGRTPNPCVRCNQWIKFELL 120

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   R LGAD++ATGHY R+      D   R  + + +D  +DQSYFLF  TQ+QL    
Sbjct: 121 LKKARGLGADMIATGHYARTEQ----DADGRYRLMKGVDPAKDQSYFLFTLTQEQLAMTL 176

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG M K+ VR LA   GL +A+K +SQ+ICFV    Y   ++       L G+IV   
Sbjct: 177 FPLGGMTKQEVRALAAGYGLRVAEKGESQEICFVPDNDYVRFIEEERGKQLLSGNIVDRK 236

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG H+G   YT+GQR+GLG+A  EPL+V+ +D     V VGPR++L    +    IN
Sbjct: 237 GKVLGVHDGTYRYTVGQRKGLGIAHPEPLYVLGVDAARKEVTVGPRDALYSDGLIATAIN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+             +   KIR    P+P  +    D+   V F + E  V  GQA VFY
Sbjct: 297 WIA-----PTPETAIEASCKIRYRHHPIPCRILPLADNRAEVRFTEREKSVTPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392
             D+    VLGGG I  +  +   
Sbjct: 352 DGDT----VLGGGWIEHAVNTKTA 371


>gi|86751223|ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           HaA2]
 gi|86574251|gb|ABD08808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris HaA2]
          Length = 402

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 216/389 (55%), Positives = 274/389 (70%), Gaps = 4/389 (1%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSLDL   P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+
Sbjct: 4   TMLNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGA 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF
Sbjct: 64  CCAGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKF 123

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL+  R+LGA  LATGHY+ SR          R +    D +RDQSYFLFATT++QL 
Sbjct: 124 RDLLATARELGASALATGHYVSSRRLAD----GSRALICAADRDRDQSYFLFATTREQLD 179

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLGDM K   RDLAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV
Sbjct: 180 FLRFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIV 239

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            LNG++LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR
Sbjct: 240 DLNGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLR 299

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACV
Sbjct: 300 DVNWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEES 395
           FY +   +ARVLGGG I  +      E +
Sbjct: 360 FYDAAEGQARVLGGGFIKSAAPRSIAEPA 388


>gi|56460418|ref|YP_155699.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina loihiensis L2TR]
 gi|73920125|sp|Q5QYZ7|MNMA_IDILO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56179428|gb|AAV82150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 371

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA
Sbjct: 2   SNASKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAASDDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
            +VC+T+ +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + 
Sbjct: 59  EKVCETLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEA 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +ATGHY+R +   G     +  M R +D  +DQSYFL+  + + +    FP+G++
Sbjct: 119 LDADYIATGHYVRRQQRDG-----KWEMLRGLDSNKDQSYFLYTLSHEHIAQTLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E GL  ADK DS  ICF+ + K+ D +++     A  G I  + G+ LG 
Sbjct: 174 EKPEVRRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AKPGPIESVEGEALGE 231

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GL +       GEP +VV  D   + +IV        L    +   +
Sbjct: 232 HEGLMYHTLGQRKGLHIGGMADNSGEPWYVVDKDVERNVLIVAQGKKHPRLYSQGLIAGQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           ++W+      +A  + F C VK R  Q  +P  V    +G   V F++    V  GQ+ V
Sbjct: 292 LHWVS----RNAPPEAFDCTVKTRYRQQDIPCRVTPLSNGDFQVQFKEPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY+ D      LGGGII 
Sbjct: 348 FYSDDV----CLGGGIIE 361


>gi|323494972|ref|ZP_08100063.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
 gi|323310767|gb|EGA63940.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
          Length = 378

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 196/382 (51%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 7   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 64  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123

Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           L AD +A GHY+R      ++     +  M R +D  +DQSYFL+  +  Q+    FP+G
Sbjct: 124 LDADYIAMGHYVRRTFPTAEELAAGEKPKMLRGLDGNKDQSYFLYTLSSDQVARSLFPVG 183

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E  L  A K DS  ICF+ + K+ D + R     A  GDI    G+++
Sbjct: 184 ELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGDIETPEGKVI 241

Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           G+HNG++ +T+GQR+GL +          +P FV   D   + +I         L+   +
Sbjct: 242 GKHNGLMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPMLKSQGL 301

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+       A+ +  +C VK R  Q  +P  +   DD  + V F++ +V V  G
Sbjct: 302 IASQLHWVDRA----AIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPG 357

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY  +      LGGGII 
Sbjct: 358 QSAVFYKDEV----CLGGGIIE 375


>gi|153875033|ref|ZP_02003007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beggiatoa sp. PS]
 gi|152068503|gb|EDN66993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beggiatoa sp. PS]
          Length = 359

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 187/377 (49%), Gaps = 27/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+V MSGGVDSSV A LLK+ GY+V G+ ++ +        +  C A +DV DA+ VC
Sbjct: 1   MKVIVGMSGGVDSSVAALLLKKQGYEVQGLFMKNWEEDD---TENYCSAAEDVRDAQAVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           DT+ +  +  ++   + + V       Y AG TP P + CNR +KF   L     LG   
Sbjct: 58  DTLEIPLHTVNFATEYWDNVFTHCLQEYQAGRTPNPDILCNREIKFKVFLEHALHLGGKA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R              + +  D  +DQSYFL+   Q QL    FP+G+++K  V
Sbjct: 118 IATGHYVRLG-----KNNAHYQLLKGHDPNKDQSYFLYTLGQSQLAHSLFPIGELQKTQV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA + GL    K DS  ICF+ +  +   + R        G +    G++LG+H+G++
Sbjct: 173 RQLAEQAGLATYAKKDSTGICFIGERPFKAFLSRFLP--TQPGPMETPEGEVLGQHDGLM 230

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+GL +       GEP +VV  D  ++R+IVG       L    +  ++++W+ 
Sbjct: 231 YYTLGQRQGLNIGGQVGGSGEPWYVVAKDMPNNRLIVGQGHNHPLLFCDGLKAQQLHWIS 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
                 A    F C  K R  Q   P  +   D+    V F + +  V  GQ+ VFY +D
Sbjct: 291 GI----APSLPFSCSAKTRYRQTEQPCVITALDNETCEVHFNQPQRAVTPGQSVVFYQND 346

Query: 372 SNEARVLGGGIISGSKR 388
                 LGG II  +  
Sbjct: 347 ----ECLGGAIIEMTYN 359


>gi|218700344|ref|YP_002407973.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI39]
 gi|218704607|ref|YP_002412126.1| tRNA -specific 2-thiouridylase MnmA [Escherichia coli UMN026]
 gi|218370330|emb|CAR18133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IAI39]
 gi|218431704|emb|CAR12586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli UMN026]
 gi|284920959|emb|CBG34022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 042]
 gi|330910947|gb|EGH39457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli AA86]
          Length = 368

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|89107979|ref|AP_001759.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111218|ref|NP_415651.4| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157156703|ref|YP_001462402.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli E24377A]
 gi|157160657|ref|YP_001457975.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli HS]
 gi|170020474|ref|YP_001725428.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ATCC 8739]
 gi|170080784|ref|YP_001730104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|191168327|ref|ZP_03030119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B7A]
 gi|193066260|ref|ZP_03047312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E22]
 gi|193071716|ref|ZP_03052616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E110019]
 gi|194436948|ref|ZP_03069047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 101-1]
 gi|209918390|ref|YP_002292474.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SE11]
 gi|218553711|ref|YP_002386624.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI1]
 gi|218694667|ref|YP_002402334.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 55989]
 gi|238900387|ref|YP_002926183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BW2952]
 gi|253773843|ref|YP_003036674.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161240|ref|YP_003044348.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli B str. REL606]
 gi|256018611|ref|ZP_05432476.1| tRNA-specific 2-thiouridylase MnmA [Shigella sp. D9]
 gi|256023169|ref|ZP_05437034.1| tRNA-specific 2-thiouridylase MnmA [Escherichia sp. 4_1_40B]
 gi|260843449|ref|YP_003221227.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260854815|ref|YP_003228706.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260867562|ref|YP_003233964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|293433421|ref|ZP_06661849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B088]
 gi|297518453|ref|ZP_06936839.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli OP50]
 gi|301029558|ref|ZP_07192636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 196-1]
 gi|307137768|ref|ZP_07497124.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli H736]
 gi|307310090|ref|ZP_07589740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|331667534|ref|ZP_08368398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA271]
 gi|8039808|sp|P25745|MNMA_ECOLI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816868|sp|A7ZZ88|MNMA_ECOHS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816869|sp|B1XA43|MNMA_ECODH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816870|sp|A7ZKS3|MNMA_ECO24 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816881|sp|B1IUD4|MNMA_ECOLC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4062697|dbj|BAA35955.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli str. K12 substr. W3110]
 gi|87081837|gb|AAC74217.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157066337|gb|ABV05592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli HS]
 gi|157078733|gb|ABV18441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E24377A]
 gi|169755402|gb|ACA78101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ATCC 8739]
 gi|169888619|gb|ACB02326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|190901622|gb|EDV61379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B7A]
 gi|192926109|gb|EDV80751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E22]
 gi|192954978|gb|EDV85481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E110019]
 gi|194423931|gb|EDX39919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 101-1]
 gi|209911649|dbj|BAG76723.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli SE11]
 gi|218351399|emb|CAU97105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 55989]
 gi|218360479|emb|CAQ98033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IAI1]
 gi|238863704|gb|ACR65702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BW2952]
 gi|242376935|emb|CAQ31656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253324887|gb|ACT29489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973141|gb|ACT38812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B str. REL606]
 gi|253977355|gb|ACT43025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|257753464|dbj|BAI24966.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257758596|dbj|BAI30093.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|257763918|dbj|BAI35413.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|260449728|gb|ACX40150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli DH1]
 gi|291324240|gb|EFE63662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B088]
 gi|299877553|gb|EFI85764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 196-1]
 gi|306909808|gb|EFN40302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|309701457|emb|CBJ00761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ETEC H10407]
 gi|315060410|gb|ADT74737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|315616009|gb|EFU96635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 3431]
 gi|320175639|gb|EFW50731.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella dysenteriae CDC 74-1112]
 gi|320184390|gb|EFW59201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella flexneri CDC 796-83]
 gi|320201029|gb|EFW75613.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli EC4100B]
 gi|323153179|gb|EFZ39443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli EPECa14]
 gi|323179331|gb|EFZ64901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1180]
 gi|323185683|gb|EFZ71044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1357]
 gi|323379030|gb|ADX51298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli KO11]
 gi|323937873|gb|EGB34137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E1520]
 gi|323942603|gb|EGB38770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E482]
 gi|323962732|gb|EGB58310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H489]
 gi|323973277|gb|EGB68466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA007]
 gi|324117296|gb|EGC11203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E1167]
 gi|331065119|gb|EGI37014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA271]
          Length = 368

 Score =  491 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT]
 gi|123327501|sp|Q0I5Y6|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus somnus 129PT]
          Length = 383

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 210/394 (53%), Gaps = 29/394 (7%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +  +L SL++ KN K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +   
Sbjct: 9   KLPKLTSLEIAKNSK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD-- 65

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +
Sbjct: 66  -YCTAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEI 124

Query: 125 KFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  ++ 
Sbjct: 125 KFKAFLEYAVEDLGADYIATGHYVRRS-----DVNGQTKLLRGLDSNKDQSYFLYTLSKD 179

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G
Sbjct: 180 QVAQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKEFLARFLP--AQPG 237

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---R 295
           +I  ++G+++G+H+G++ YT+GQR+GLG+        +P +VV  D  ++ ++V      
Sbjct: 238 EIRMVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGNDN 297

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEK 354
            +L    +   ++ W+        +    +C VK R  Q  +    +  NDD V V F++
Sbjct: 298 SALLSQGLIATQLYWVD----RLPIRQNLRCTVKTRYRQQDIACEVIPLNDDCVEVRFDE 353

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            ++ V  GQ+ VFY  +      LGGG+I    +
Sbjct: 354 PQIAVTPGQSAVFYQGE----ECLGGGVIERQIK 383


>gi|161986546|ref|YP_310111.2| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei Ss046]
 gi|205829110|sp|Q3Z2Y6|MNMA_SHISS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R   G    G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPG--QPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|187730842|ref|YP_001879941.1| tRNA-specific 2-thiouridylase MnmA [Shigella boydii CDC 3083-94]
 gi|205816914|sp|B2TZ86|MNMA_SHIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187427834|gb|ACD07108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii CDC 3083-94]
          Length = 368

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + N V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|110805161|ref|YP_688681.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5 str. 8401]
 gi|161485922|ref|NP_707062.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 301]
 gi|161486505|ref|NP_836851.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str.
           2457T]
 gi|123342960|sp|Q0T5N9|MNMA_SHIF8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828969|sp|Q83LF7|MNMA_SHIFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110614709|gb|ABF03376.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313650389|gb|EFS14796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri 2a str. 2457T]
          Length = 368

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIKVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|195979019|ref|YP_002124263.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229487422|sp|B4U0P1|MNMA_STREM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|195975724|gb|ACG63250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 374

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D 
Sbjct: 1   MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y +G TP P V CN+ +KF   L   
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +     D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 MTLGADYVATGHYAQIKR----DENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A + GL  A K DS  ICF+ +  +   +       A +G ++ ++G+ +
Sbjct: 174 HLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDM 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +  
Sbjct: 232 GEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             I +  +   E       +C  K R  Q    V V    D   V F + +  +  GQA 
Sbjct: 292 SVIQFTREVPEE----FTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGGII  + +     + +
Sbjct: 348 VFYDG----HECLGGGIIDMAYKDGEPCQYI 374


>gi|323497848|ref|ZP_08102859.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
 gi|323317076|gb|EGA70076.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
          Length = 369

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 193/381 (50%), Gaps = 28/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R       +   +  M R +D  +DQSYFL+  +  Q+    FP+G++
Sbjct: 120 LDADYIAMGHYVRRTF---PENGEKAQMLRGLDSNKDQSYFLYTLSSDQVERSLFPVGEL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ + + +     A  GDI    G+++G+
Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPEGKVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          EP FV   D   + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGQKGGGGNEEPWFVGDKDLKRNVLIAVQGKDHPLLKSEGLIA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+        + D  KC VK R  Q  +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----RTPIKDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            VFY  +      LGGGII  
Sbjct: 351 AVFYQDEV----CLGGGIIEK 367


>gi|225871462|ref|YP_002747409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. equi 4047]
 gi|254811462|sp|C0MB53|MNMA_STRE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225700866|emb|CAW95613.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. equi 4047]
          Length = 374

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D 
Sbjct: 1   MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y +G TP P V CN+ +KF   L   
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +     D      M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 MTLGADYVATGHYAQIKR----DENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A + GL  A K DS  ICF+ +  +   +       A +G ++ ++G+ +
Sbjct: 174 HLQKSEVRAIAEQAGLATAKKKDSTGICFISEKNFKTFLSHYLP--AQKGRMMTVDGRDM 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +  
Sbjct: 232 GEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             I +  +   E       +C  K R  Q    V V    D   V F + +  +  GQA 
Sbjct: 292 SVIQFTREVPEE----FTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGGII  + +     + +
Sbjct: 348 VFYDG----HECLGGGIIDMAYKDGEPCQYI 374


>gi|315126737|ref|YP_004068740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas sp. SM9913]
 gi|315015251|gb|ADT68589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas sp. SM9913]
          Length = 366

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 28/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R  L        + +MCR +D  +DQSYFL+    + +    FP+GD+ K  V
Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDDNKDQSYFLYTLGHEHIAQTLFPVGDIAKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G  +G H G++
Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GL +       GEP +VV  D   + +IVG       L  + +   +++W+ 
Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKNHPRLYSNGLNANQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                       +C VK R  Q+ +   +   +DG   V F++ +  V  GQ+ VFY ++
Sbjct: 298 ----RVGPQGTTRCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFYANE 353

Query: 372 SNEARVLGGGIISGSKR 388
                 LGGGII    +
Sbjct: 354 V----CLGGGIIDSVIK 366


>gi|251793304|ref|YP_003008032.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534699|gb|ACS97945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 384

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L++  L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  AKLSAEQLAQNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLEDAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA+ +ATGHY+R R    +       + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDTNKDQSYFLYTLSTKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD+ K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGDIAKPIVRAIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV       +
Sbjct: 241 RTVDGDIIGRHDGLMYHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSA 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L    +  ++++W+        + +  +C VK R  Q  VP  ++  DD  + V F++ +
Sbjct: 301 LLSTGLIAQQLHWVD----RQPIRESLRCTVKTRYRQTDVPCIIEPIDDESIKVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
           + V  GQ+ VFY ++      LGGGII 
Sbjct: 357 IAVTPGQSAVFYLNEV----CLGGGIIE 380


>gi|19747021|ref|NP_608157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS8232]
 gi|19749279|gb|AAL98656.1| tRNA-methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 379

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 9   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379


>gi|24638305|sp|Q8NZ00|MNMA_STRP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
           HTA426]
 gi|81347762|sp|Q5L186|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 370

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R     G     +  + R  D  +DQ+YFL   T + L  + FP+G++ K+
Sbjct: 119 DYIATGHYARINRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  + + +K      A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLP--AQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G  +V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LG  II    + DA   +  S
Sbjct: 348 V----CLGSAIIDEVIKMDASTATAAS 370


>gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulovorans 743B]
 gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B]
 gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulovorans 743B]
          Length = 373

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 203/390 (52%), Gaps = 23/390 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K  K+++VV+ +SGGVDSSV A  LK  GYDVIGV +  ++    +   G C + QD 
Sbjct: 1   MEKENKNIKVVLGVSGGVDSSVAALELKNQGYDVIGVFMNNWDDEDEN---GVCTSVQDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D R+VCD+I+V +Y  ++++ + + V   F + Y +G TP P V CN+ +KF   L   
Sbjct: 58  EDVRKVCDSISVPYYSVNFQKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDFA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GAD +A GHY +     G+       + R  D  +DQ+YFL    Q QL    FP+G
Sbjct: 118 LTVGADYIAMGHYAQVDFRDGE-----YKLLRAADENKDQTYFLCKLNQYQLSKSMFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR+ ARE  L  A K DS  +CF+ +  +   +       A  G ++ L+G ++
Sbjct: 173 HLRKPEVREKAREANLVTATKKDSTGVCFIGEKNFRQFLNNYLP--AKSGPMMTLDGNVM 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
           G H G+++YT+GQR+GLG+   GEP FVV  D   + + V   E    L  + +   E++
Sbjct: 231 GEHIGLMHYTLGQRKGLGIGGAGEPWFVVDKDLKKNILYVVQGEQDPRLYSYGLTAVEVS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+     E      F C  K R  Q    V V  R D+   V+F + +  +  GQ  VFY
Sbjct: 291 WIS----EKEKPKTFNCTAKFRYRQKDQGVIVHQREDNTCIVEFIEPQKAITPGQIVVFY 346

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398
             D      LGGG I    +S    +++L+
Sbjct: 347 DGD----ECLGGGTIDKYYKSKQHLQAVLN 372


>gi|192361469|ref|YP_001982951.1| tRNA-specific 2-thiouridylase MnmA [Cellvibrio japonicus Ueda107]
 gi|190687634|gb|ACE85312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellvibrio japonicus Ueda107]
          Length = 378

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/395 (31%), Positives = 201/395 (50%), Gaps = 27/395 (6%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           +S+ T   +          +V+V MSGGVDSSV A LL++ GY V G+ ++ ++    ++
Sbjct: 1   MSDVTPSTAPVTTSRSPGAKVIVGMSGGVDSSVSALLLQQQGYAVEGLFMKNWDEDDGTE 60

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
               C A  D+ DA+RVCD + +  +  ++   + + V   F   Y AG TP P + CNR
Sbjct: 61  ---YCTAKADLADAQRVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNR 117

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            +KF   +   + LG +++ATGHY+R       D     ++ + +D  +DQSYFL A  +
Sbjct: 118 EIKFKVFMEYAQMLGGELIATGHYVRRA-----DRNGHTLLLKGLDPNKDQSYFLHAVGE 172

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            +     FP+G+++K  VR +A E GL   +K DS  ICF+ + ++ D +++     A  
Sbjct: 173 AEFAKSLFPVGELEKPEVRRIAEEHGLVTHNKKDSTGICFIGERRFKDFLQQYLP--AQP 230

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--- 294
           G+I   +GQ++G H G++ +TIGQR+GLG+        EP FV   D   + +IV     
Sbjct: 231 GEIQTPDGQVIGEHMGLMYHTIGQRQGLGIGGVKGANEEPWFVAQKDLGRNVLIVVQGTD 290

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFE 353
              L  + +  ++ +W+       A    F+C  K R  Q      VQ  D+G + V F+
Sbjct: 291 HPLLYTNHLLAQQTHWINGS----APASEFRCMAKTRYRQPDQACRVQVLDNGRLDVFFD 346

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           + +  V  GQ+ V Y  D+     LGG +I  +  
Sbjct: 347 EPQRAVTPGQSLVLYDGDT----CLGGAVIESTDN 377


>gi|254480686|ref|ZP_05093933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2148]
 gi|214039269|gb|EEB79929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2148]
          Length = 363

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 193/374 (51%), Gaps = 26/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LLK  GY V G+ ++ +     ++    C A +D  DA+ V 
Sbjct: 7   KKVIVGMSGGVDSSVSALLLKEQGYAVEGLFMKNWEEDDGTE---YCTAKEDFADAQAVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 64  DKLGIKLHGANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFKAFLDYALTLGADL 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R  L  G     +  + + +D  +DQSYFL A   ++L    FP+GD++K  V
Sbjct: 124 IATGHYTRLGLAAG-----QATLLKGLDPNKDQSYFLHAVGHRELAKTLFPVGDIEKPEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA E  L  A K DS  ICF+ + ++ D +++     A  GDIV L+G+ LG+H G++
Sbjct: 179 RSLAEEYDLATAKKKDSTGICFIGERRFSDFLQQYLP--AQPGDIVSLDGEHLGQHQGLM 236

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +VV  D +++ ++V       +L    +   E+ W+ 
Sbjct: 237 YHTIGQRQGLGIGGLANHTDDPWYVVEKDLDNNVLLVAQGNDHPALFKSSLVTGEVFWVA 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       +C  K+R  Q      +     G  V+F+  +  +  GQ+ VFY  ++
Sbjct: 297 GA----PPPLPLQCTAKVRYRQSDQSCTITEQKGGYQVEFDAPQRAITPGQSVVFYLGET 352

Query: 373 NEARVLGGGIISGS 386
                LGGG+I  +
Sbjct: 353 ----CLGGGVIERT 362


>gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
 gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. WCH70]
          Length = 370

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R     G     +  + R  D  +DQ+YFL   T + L  + FP+G++ K+
Sbjct: 119 DYIATGHYARISRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  + + +K      A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLP--AQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G  +V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LG  II    + DA   +  S
Sbjct: 348 V----CLGSAIIDEVIKMDASTATAAS 370


>gi|206576946|ref|YP_002239233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae 342]
 gi|229486343|sp|B5XSN3|MNMA_KLEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|206566004|gb|ACI07780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae 342]
          Length = 368

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ 
Sbjct: 4   SQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137
           VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LG
Sbjct: 61  VCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K
Sbjct: 121 ADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ ++G+ +G H 
Sbjct: 176 PQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQ 233

Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++++
Sbjct: 234 GLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQLH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+      + +    +C VK R  Q  +P  V   ++D + V F++    V  GQ+ VFY
Sbjct: 294 WVD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFY 349

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGGII 
Sbjct: 350 LGEV----CLGGGIIE 361


>gi|27382106|ref|NP_773635.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium japonicum USDA
           110]
 gi|81735060|sp|Q89ES7|MNMA_BRAJA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27355276|dbj|BAC52260.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bradyrhizobium japonicum USDA 110]
          Length = 393

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/378 (56%), Positives = 277/378 (73%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK +GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V   + + HYV DYE+RFR +VI  FA SYA GETP+PC++CNR++KF D
Sbjct: 62  AGQDIHDARDVAAKLGIPHYVLDYEDRFRESVIDNFADSYALGETPVPCIECNRSIKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   R+LGA  LATGHY+ SR    DDG   R++    D +RDQSYFLFATTQ+QL  L
Sbjct: 122 LLKTARELGAQALATGHYVASRRL--DDGS--RVLVCAADADRDQSYFLFATTQEQLDYL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y D++ R+       GDIV L
Sbjct: 178 RFPLGDMTKPETRELARRFGLAVADKHDSQDICFVPTGRYTDIITRLRPNAMDPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LGRHNGI N+T+GQRRGLG+A   PLFVV L+  + RV+VGPRE+L++HRI LR++
Sbjct: 238 DGRVLGRHNGIANFTVGQRRGLGIAAHAPLFVVRLEAANRRVVVGPREALKMHRISLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NWLG G  + A+ +G + FV++RS++ P P +++       ++    E GV+ GQACVFY
Sbjct: 298 NWLGGGDIDSAIGNGLEMFVRVRSTRSPQPAWLRGAGGHYEIELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            + S +ARVLGGG I  +
Sbjct: 358 DAPSGQARVLGGGFIQSA 375


>gi|119470125|ref|ZP_01612891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonadales bacterium TW-7]
 gi|119446546|gb|EAW27820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonadales bacterium TW-7]
          Length = 366

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 193/377 (51%), Gaps = 28/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R  L        + +MCR +D  +DQSYFL+  + + +    FP+GD+ K  V
Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDNNKDQSYFLYTLSHEHIAQTLFPVGDIAKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L   DK DS  ICF+ + K+ D +++     A  G I    G  +G H G++
Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTEGNNVGEHEGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GL +       GEP +VV  D   + +IVG       L  + +   +++W+ 
Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKDHPRLYSNGLNANQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                       +C VK R  Q+ +   +   DDG   V F++ +  V  GQ+ VFY  +
Sbjct: 298 ----RVGPKGTTRCTVKTRYRQEDINCTLLVGDDGMARVLFDEPQKAVTPGQSAVFYAQE 353

Query: 372 SNEARVLGGGIISGSKR 388
                 LGGGII    +
Sbjct: 354 V----CLGGGIIDSVIK 366


>gi|329568350|gb|EGG50159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1467]
          Length = 374

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V D I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    QL
Sbjct: 60  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q QL    FPLG M+
Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A   GL  A K DS  +CF+ +  + + +       A +G++V  +G+I G+H
Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G++ YTI    G   G G    EP FV+  D  +  V+VG     E L    +   E++
Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTYNVLVGQGFHHEKLYATHLEASEVH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367
           +  D      +   F C  K R  Q  +PV V  ++DG    V F++    V  GQA VF
Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y         LGGG+I  + + +   + +
Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374


>gi|332035000|gb|EGI71520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 366

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 28/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAADDLKDAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R  L        + +MCR +D  +DQSYFL+  + + +    FP+GD++K  V
Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVGDIEKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G  +G H G++
Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GL +       GEP +VV  D   + ++VG       L  + +   +++W+ 
Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLVVGQGKDHPRLYSNGLNANQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                       +C VK R  Q+ +   +   +DG   V F++ +  V  GQ+ VFY  D
Sbjct: 298 ----RVGPKGTTRCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFYAED 353

Query: 372 SNEARVLGGGIISGSKR 388
                 LGGGII    +
Sbjct: 354 V----CLGGGIIDSVIK 366


>gi|261339434|ref|ZP_05967292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318240|gb|EFC57178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 370

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A  + L  A K DS  ICF+ + K+ + + R     A  G IV ++G  +G+
Sbjct: 175 EKPEVRKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           ++W+      + V    +C VK R  Q  +P  V   +DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPVKGTLRCTVKTRYRQTDIPCTVTALDDDRIDVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY+ +      LGGGII 
Sbjct: 349 FYSGEI----CLGGGIIE 362


>gi|238922133|ref|YP_002935647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium eligens ATCC 27750]
 gi|238873805|gb|ACR73513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium eligens ATCC 27750]
          Length = 355

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 206/365 (56%), Gaps = 13/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  CC    V DARRV
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDDATEAAENGCCGISAVDDARRV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV +++  F+  VI  F   Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 62  AGQLDIPYYVMNFKNEFKCNVIDYFVDEYKKGRTPNPCIACNRYVKWESLLKRSLEIGAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R  +C  +   +DQ+Y L+  TQ+QL     P+GD  K+ 
Sbjct: 122 YIATGHYARIHQLP----NGRYTICNSVTARKDQTYALYNLTQEQLSHTLLPIGDYTKDQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++G+ +A K DS +ICF+    Y   +KR     ++ G+ + +NG ++GRH GI
Sbjct: 178 VREIASKIGITVAKKPDSMEICFIPDNDYAGFIKRETGYTSVPGNFIDVNGNVIGRHQGI 237

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQR+GLG+A+G+P FVV +   ++ V++G    +   ++Y   +N++     E  
Sbjct: 238 IHYTVGQRKGLGLALGKPAFVVAIRPETNEVVIGDNSDVFSPKLYANNLNFMSIPSLE-- 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +   KIR S +     ++  +++ +   F++    V  GQA V Y  D+    VL
Sbjct: 296 --GEMRAKGKIRYSHEGAMCTIRMFDENTLECTFDEPVRAVTPGQALVLYDGDN----VL 349

Query: 379 GGGII 383
           GGG I
Sbjct: 350 GGGTI 354


>gi|213052788|ref|ZP_03345666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
          Length = 374

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 195/375 (52%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 11  QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAV 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138
           CD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LGA
Sbjct: 68  CDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGA 127

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+G+++K 
Sbjct: 128 DYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKP 182

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  +G H G
Sbjct: 183 QVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQG 240

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++++W
Sbjct: 241 LMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ+ VFY+
Sbjct: 301 VD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYS 356

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 357 GEV----CLGGGIIE 367


>gi|215486387|ref|YP_002328818.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264459|emb|CAS08822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 368

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|225869459|ref|YP_002745407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
 gi|259495839|sp|C0MGQ2|MNMA_STRS7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225702735|emb|CAX00880.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 374

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 192/391 (49%), Gaps = 25/391 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +    RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D 
Sbjct: 1   MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   V D I + +Y  ++E+ + + V   F + Y +G TP P V CN+ +KF   L   
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 118 MTLGADYVATGHYAQIKR----DENGVVHMLRGFDKGKDQTYFLSQLSQKQLQKTMFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A + GL  A K DS  ICF+ +  +   +       A +G ++ ++G+ +
Sbjct: 174 HLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDM 231

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H G++ YTIGQR GLG+        +P FVV  D + + + VG     ESL    +  
Sbjct: 232 GEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
             I +  +   E       +C  K R  Q    V V    D   V F + +  +  GQA 
Sbjct: 292 SVIQFTREVPEE----FTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           VFY         LGGGII  + +     + +
Sbjct: 348 VFYDG----HECLGGGIIDMAYKDGEPCQYI 374


>gi|212634687|ref|YP_002311212.1| tRNA-specific 2-thiouridylase MnmA [Shewanella piezotolerans WP3]
 gi|226704776|sp|B8CLH4|MNMA_SHEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|212556171|gb|ACJ28625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella piezotolerans WP3]
          Length = 371

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L A
Sbjct: 67  CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY+R R     D      M R +D  +DQSYFL+  + +Q+    FP+G+++K 
Sbjct: 127 DYIAMGHYVRRR-----DIDGTSQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKS 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VRD+A+EMGL   DK DS  ICF+ + K+ D +       A  G+I    G+++G+H G
Sbjct: 182 EVRDIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP--AQPGNIETSEGEVIGQHQG 239

Query: 259 IINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   + ++VG       L  + +   +++W
Sbjct: 240 LMYHTLGQRKGLGIGGLKNSSEDPWYVVEKDLVRNVLVVGQGGNHPRLMSNGLLANQLHW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G K  +K R  Q  VP  V  + DD + V F+++   V  GQ+ VFY 
Sbjct: 300 VD----RKGPAEGAKITLKTRYRQHDVPCTVTYDSDDQIRVIFDEAVAAVTPGQSAVFYD 355

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 356 GEI----CLGGGIID 366


>gi|156974113|ref|YP_001445020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi ATCC BAA-1116]
 gi|166235090|sp|A7MSW1|MNMA_VIBHB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|156525707|gb|ABU70793.1| hypothetical protein VIBHAR_01824 [Vibrio harveyi ATCC BAA-1116]
          Length = 374

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLDIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +A GHY+R      D+   +  M R +D  +DQSYFL+  + +Q+    FP+GD+
Sbjct: 120 LDADYIAMGHYVRRSFPENDE---KPQMLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+
Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234

Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           H G++ +T+GQR+GL +          +P FV   D   + +I         L+   +  
Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364
            +++W+      + + D  KC VK R  Q+ +P  +   DD  + V F++ ++ V  GQ+
Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            VFY  D      LGG II 
Sbjct: 351 AVFYKDDV----CLGGSIIE 366


>gi|71904534|ref|YP_281337.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS6180]
 gi|71803629|gb|AAX72982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS6180]
          Length = 379

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 9   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379


>gi|291617068|ref|YP_003519810.1| TrmU [Pantoea ananatis LMG 20103]
 gi|291152098|gb|ADD76682.1| TrmU [Pantoea ananatis LMG 20103]
          Length = 376

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 12  QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAV 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138
           CD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LGA
Sbjct: 69  CDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGA 128

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R +     D   R  + R  D  +DQSYFL+  + +Q+    FP+G+++K 
Sbjct: 129 DFIATGHYVRRQ-----DSDGRSHLLRGRDGNKDQSYFLYTLSHEQIAQSLFPVGELEKP 183

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + K+ + + R     A  G+I  ++GQ++G H G
Sbjct: 184 EVRRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQG 241

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   +R+IV   G    L    +  ++++W
Sbjct: 242 LMYHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHW 301

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  +P   + + DD + V F++    V  GQ+ VFY 
Sbjct: 302 VD----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYL 357

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 358 GDV----CLGGGIIE 368


>gi|110641310|ref|YP_669040.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 536]
 gi|191173062|ref|ZP_03034595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli F11]
 gi|218558015|ref|YP_002390928.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli S88]
 gi|218689086|ref|YP_002397298.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ED1a]
 gi|306814017|ref|ZP_07448190.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
 gi|331657197|ref|ZP_08358159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA206]
 gi|123344119|sp|Q0TIU0|MNMA_ECOL5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822319|sp|A1AA27|MNMA_ECOK1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822366|sp|Q1RD20|MNMA_ECOUT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110342902|gb|ABG69139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 536]
 gi|190906607|gb|EDV66213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli F11]
 gi|218364784|emb|CAR02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli S88]
 gi|218426650|emb|CAR07478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ED1a]
 gi|294491197|gb|ADE89953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IHE3034]
 gi|305852654|gb|EFM53102.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
 gi|307627395|gb|ADN71699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146]
 gi|323187621|gb|EFZ72928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli RN587/1]
 gi|323953180|gb|EGB49046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H252]
 gi|323957959|gb|EGB53671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H263]
 gi|331055445|gb|EGI27454.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA206]
          Length = 368

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|205829100|sp|Q48QM8|MNMA_STRPM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|295096181|emb|CBK85271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 370

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G  +G+
Sbjct: 175 EKPEVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366
           ++W+      + +    +C VK R  Q  +P  V    DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----REPLKGTLRCTVKTRYRQTDIPCTVTALYDDRIDVRFDEPVSAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY+ +      LGGGII 
Sbjct: 349 FYSGEI----CLGGGIIE 362


>gi|161984923|ref|YP_408327.2| tRNA-specific 2-thiouridylase MnmA [Shigella boydii Sb227]
 gi|205821943|sp|Q31ZK9|MNMA_SHIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|332094391|gb|EGI99440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii 3594-74]
          Length = 368

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|77360631|ref|YP_340206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123588218|sp|Q3IH16|MNMA_PSEHT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76875542|emb|CAI86763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 366

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 194/377 (51%), Gaps = 28/377 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A  D+ DA+ VCD
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDE---YCAAADDLKDAQAVCD 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + LGAD 
Sbjct: 65  KLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R  L        + +MCR +D  +DQSYFL+  + + +    FP+GD+ K  V
Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDDNKDQSYFLYTLSHEHIGQTLFPVGDIAKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G  +G H G++
Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGLM 237

Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+GL +       GEP +VV  D   + +IVG       L  + +   +++W+ 
Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQGKDHPRLYSNGLNANQLHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                       +C VK R  Q+ +   +   +DG   V F++ +  V  GQ+ VFY  D
Sbjct: 298 ----RIGPKGTTRCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFYAED 353

Query: 372 SNEARVLGGGIISGSKR 388
                 LGGGII    +
Sbjct: 354 V----CLGGGIIDSVIK 366


>gi|15675922|ref|NP_270096.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes M1 GAS]
 gi|71911653|ref|YP_283203.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS5005]
 gi|14195262|sp|P58075|MNMA_STRP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13623161|gb|AAK34817.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus
           pyogenes M1 GAS]
 gi|71854435|gb|AAZ52458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS5005]
          Length = 373

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I
Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           ++  +   E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY
Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY 349

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LGGG+I  + ++    + +
Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373


>gi|304413559|ref|ZP_07395032.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Regiella insecticola LSR1]
 gi|304284402|gb|EFL92795.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Regiella insecticola LSR1]
          Length = 367

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 131/376 (34%), Positives = 206/376 (54%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +++V MSGGVDSSV A LLK+ GY V G+ ++ +           C A +D+ DA+ 
Sbjct: 5   SQKKIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMKNWEEDDND---TYCGAAKDLADAQA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137
           VCD +N++ +  ++   + + V   F + Y AG TP P + CN+ +KF+  LS    +L 
Sbjct: 62  VCDKLNINLHRVNFAAEYWDNVFKLFLAEYQAGRTPNPDILCNKEIKFNAFLSFACEELE 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R     G +      + R +D  +DQSYFL+   QQQL    FP+GD+KK
Sbjct: 122 ADYIATGHYVRRHTSAGKN-----CLLRGLDDNKDQSYFLYTLNQQQLARSLFPIGDLKK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR++A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ LG+H+
Sbjct: 177 SEVRNIAEQLNLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGSIISVDGQDLGQHH 234

Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+       G P +VV  +  ++ ++V        L  H +  ++++
Sbjct: 235 GLMYHTLGQRKGLGIGGIKEGNGAPWYVVDKNIATNTLLVAQDHKHAKLMSHGLIAQQLS 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+       ++    +C VK R  Q  +P  V  + ++ + V FE+  V V  GQ+ VFY
Sbjct: 295 WIDL----PSLTFPLRCMVKTRYRQQDIPCTVFSKAENSIEVRFEQPIVAVTPGQSAVFY 350

Query: 369 TSDSNEARVLGGGIIS 384
             D      LGGGII 
Sbjct: 351 QGDI----CLGGGIIE 362


>gi|220929349|ref|YP_002506258.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulolyticum H10]
 gi|219999677|gb|ACL76278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulolyticum H10]
          Length = 359

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 211/367 (57%), Gaps = 14/367 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARR 78
            +V++ MSGGVDSSV AA+L R GY+VIGVTLQ++      +RK  G CC+   V DARR
Sbjct: 4   KKVMLGMSGGVDSSVAAAILLRQGYEVIGVTLQIWQDMDEERRKSEGGCCSLSAVDDARR 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +YV ++++ F   VI  F   Y  G TP PC+ CNR VK+  +L     +G 
Sbjct: 64  VANKLGIPYYVLNFKDIFSKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMGI 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +    + D    R I+ + +  ++DQ+Y L+  TQQQL     P+GD  K+
Sbjct: 124 DYIATGHYAK---VIQDAETGRFILKKSVTDKKDQTYALYNLTQQQLSHTLMPVGDYTKD 180

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL +A K DSQ+ICF+    Y   +        + G  V   G +LG H G
Sbjct: 181 EIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFVDTKGNVLGNHKG 240

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I++YTIGQR+GLG+A G+P+FVV +D  ++ V++G    +   ++   ++N++      +
Sbjct: 241 IVHYTIGQRKGLGIAFGKPMFVVAVDPVNNTVVLGDDSEVFSEKLTASDLNFISI----E 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             +DG +   KIR S    P  +   +++ + V F+  +  +  GQ+ VFY  D     V
Sbjct: 297 KPIDGMRVNAKIRYSAKEAPATISIIDENRIRVVFDTPQRAITPGQSVVFYDGDV----V 352

Query: 378 LGGGIIS 384
           +GGG I 
Sbjct: 353 VGGGTID 359


>gi|205822083|sp|Q2ISK2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/387 (55%), Positives = 273/387 (70%), Gaps = 4/387 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL   P+D RVVVAMSGGVDSS  AALLK  GYDV+G+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR          R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLATARELGASALATGHYVSSRRLAD----GSRALICAADRDRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   RDLAR+ GL +ADK DSQDICFV  G+Y DVV+R+       G+IV L
Sbjct: 178 RFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           NG++LG H GI+++T+GQRRGLG+A   PL+V+ LD    RV+VGPRE+L + RI LR++
Sbjct: 238 NGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG  + AV DG + FV++RS++ P P +++    G  V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEES 395
            +   +ARVLGGG I  +      E +
Sbjct: 358 DAAEGQARVLGGGFIKSAAPRSIAEPA 384


>gi|194433661|ref|ZP_03065937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1012]
 gi|194418090|gb|EDX34183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1012]
 gi|320179167|gb|EFW54125.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella boydii ATCC 9905]
 gi|332089265|gb|EGI94371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii 5216-82]
 gi|332092905|gb|EGI97973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 155-74]
          Length = 368

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGVHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|154252635|ref|YP_001413459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156585|gb|ABS63802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
          Length = 462

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/372 (58%), Positives = 264/372 (70%), Gaps = 9/372 (2%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
              E T LNSLDL   P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A 
Sbjct: 60  AFDEMTGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAV 119

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAGQD+ DARRV D I + HYV DYE+RFR AV+  FA SYAAGETP+PCV CN
Sbjct: 120 SRKGACCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCN 179

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             VKF DLL   R LGA  LATGHYI SR      G   R + RP D ERDQSYFLFATT
Sbjct: 180 ERVKFRDLLDTARDLGAAALATGHYIASRR-----GAAGRELHRPRDEERDQSYFLFATT 234

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG++ K   R LA  MGL++A K DSQDICFV  G+Y  +V+++  G + 
Sbjct: 235 QEQLEFLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASA 294

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRES 297
            G++VHL+G++LGRH+GI+N+TIGQRRGLG+       EPLFVV LD    +VIVGPRE+
Sbjct: 295 PGEVVHLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREA 354

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           LE  ++ LR+INWLGDG F +   +G K   K+RS++ PVP  + R  +G  V+  +SE 
Sbjct: 355 LETQKLTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEG 414

Query: 358 GVASGQACVFYT 369
           GVA GQACVFY 
Sbjct: 415 GVAPGQACVFYD 426


>gi|327393518|dbj|BAK10940.1| tRNA 5-methylaminomethyl-2- thiouridylate-methyltransferase TrmU
           [Pantoea ananatis AJ13355]
          Length = 370

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 6   QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138
           CD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LGA
Sbjct: 63  CDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R +     D   R  + R  D  +DQSYFL+  + +Q+    FP+G+++K 
Sbjct: 123 DFIATGHYVRRQ-----DSDGRSHLLRGGDGNKDQSYFLYTLSHEQIAQSLFPVGELEKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + K+ + + R     A  G+I  ++GQ++G H G
Sbjct: 178 EVRRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQG 235

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   +R+IV   G    L    +  ++++W
Sbjct: 236 LMYHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  +P   + + DD + V F++    V  GQ+ VFY 
Sbjct: 296 VD----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYL 351

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 352 GDV----CLGGGIIE 362


>gi|205814741|sp|A8AHK2|MNMA_CITK8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/381 (32%), Positives = 201/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G+H G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        L    + 
Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F        +C VK R  Q  +P  V+  +D+ + V F++    V  GQ
Sbjct: 289 AQQLHWVDREPFS----GTLRCTVKTRYRQTDIPCTVKALDDERIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGGII 
Sbjct: 345 SAVFYNGEV----CLGGGIIE 361


>gi|296133414|ref|YP_003640661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermincola sp. JR]
 gi|296031992|gb|ADG82760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermincola potens JR]
          Length = 358

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 156/363 (42%), Positives = 216/363 (59%), Gaps = 13/363 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVVAMSGGVDSS+ AALL+  GYDVIGVT+Q++      + +G CC+   V DARRV D
Sbjct: 5   KVVVAMSGGVDSSLAAALLQEQGYDVIGVTMQIW--PAEEQAEGGCCSLAAVEDARRVAD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ + +YV ++ + FR  VI  F + Y AG TP PC+ CNR VKF  LL     LGA+ +
Sbjct: 63  TLGIPYYVMNFRDLFRKTVIADFCAEYMAGRTPNPCIVCNRKVKFEALLQKALALGAEYI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      D+ +RR +M R +D  +DQ+Y L+  TQ QL     PLG+  K   R
Sbjct: 123 ATGHYARLSY---DEARRRYLMRRALDRGKDQTYALYNLTQYQLKHTLMPLGNYTKAEAR 179

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++GL +A+K DSQ+ICFV    Y   ++         G  + L G +LGRH GI  
Sbjct: 180 EMAAKLGLRVANKPDSQEICFVTDNNYRRFLEENVDQEIKPGPFLDLEGNVLGRHEGIPF 239

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+A+G+P++VV +D   + VI+G  E +    +   + N++    +   + 
Sbjct: 240 YTIGQRKGLGIALGKPMYVVDIDPERNAVILGSNEDVFARGLISTDNNFI----YIPELK 295

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           D  +  VKIR S  P    +  +DDGV V+FEK +  V  GQA VFY  D     V+GGG
Sbjct: 296 DPMEVEVKIRYSAQPAKAIIYPHDDGVRVEFEKPQRAVTPGQAAVFYKDD----YVVGGG 351

Query: 382 IIS 384
            I 
Sbjct: 352 TIK 354


>gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2053A-b]
 gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 60-B]
 gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2053A-b]
 gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 60-B]
          Length = 375

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/381 (35%), Positives = 200/381 (52%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   TQ+QL    FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVT----DENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H
Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR GLG+   +    P FVV  +   + +IV      E L    +   E++
Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D  +    C  K R  Q  V V V   ++++ V+V+F++    V  GQA VF
Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKR 388
           Y  +      LGG II  + R
Sbjct: 351 YDGE----ECLGGAIIDKAYR 367


>gi|222055075|ref|YP_002537437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. FRC-32]
 gi|221564364|gb|ACM20336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. FRC-32]
          Length = 370

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 157/378 (41%), Positives = 215/378 (56%), Gaps = 18/378 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK----ASKRKGSCCA 69
           ++K     RVV+AMSGGVDSSV AALL+  G++VIG+++Q+++  K      ++  +CC+
Sbjct: 1   MNKEKSKKRVVIAMSGGVDSSVSAALLQEQGFEVIGISMQVWDYGKFAAAEGEKFDTCCS 60

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D++DARRV + + +  YV ++E+ F + VI  F   Y  G TP PCV CN+ +KF  L
Sbjct: 61  LDDIHDARRVAEQLGIPFYVVNFEDEFEDLVIKDFVDEYLKGRTPNPCVRCNQWIKFELL 120

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L   R LGAD +ATGHY R+      D   R  + + +D  +DQSYFLF  TQ+QL    
Sbjct: 121 LKKARGLGADFIATGHYARTLR----DDTGRFHLLKGVDQTKDQSYFLFTLTQEQLAMTL 176

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG+M K  VR LA    L +A+K +SQ+ICFV    Y   ++       L G+IV  +
Sbjct: 177 FPLGEMTKTQVRALAARYNLRVAEKGESQEICFVPDNDYVRFIEEERGKELLSGNIVDRS 236

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+ILGRH G   YTIGQRRGLG+A  EPL V+ L+  +  V+VGP+++L  H +     N
Sbjct: 237 GKILGRHRGTYRYTIGQRRGLGIAHPEPLHVLELNAETKEVVVGPKDALFSHGLVAANTN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+       A         KIR    PV   V+      V V F + E  V  GQA VFY
Sbjct: 297 WIN-----PAPDAAIVATCKIRYRHQPVSCTVKPLPCSRVEVRFAEREKSVTPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGS 386
             D+    VLGGG I  +
Sbjct: 352 EGDT----VLGGGWIEKA 365


>gi|170718124|ref|YP_001785155.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 2336]
 gi|205816854|sp|B0UWF2|MNMA_HAES2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168826253|gb|ACA31624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus somnus 2336]
          Length = 383

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 212/394 (53%), Gaps = 29/394 (7%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +  +L +L++ KN K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +   
Sbjct: 9   KLPKLTALEIAKNSK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD-- 65

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +
Sbjct: 66  -YCTAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEI 124

Query: 125 KFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           KF   L      LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  ++ 
Sbjct: 125 KFKAFLEYAVEDLGADYIATGHYVRRS-----DVNGQTKLLRGLDSNKDQSYFLYTLSKD 179

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           Q+    FP+G+++K  VR +A ++GL  A+K DS  ICF+ + K+ D ++R     A  G
Sbjct: 180 QVAQSLFPVGEIEKPIVRAIAGDLGLITAEKKDSTGICFIGERKFKDFLERFLP--AQPG 237

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---R 295
           +I  ++G+++G+H+G++ YT+GQR+GLG+        +P +VV  D  ++ ++V      
Sbjct: 238 EIRMVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVDKDLINNVLVVAQGNDN 297

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEK 354
            +L    +   ++ W+        +    +C VK R  Q  V    +  NDD + V F++
Sbjct: 298 SALLSQGLMATQLYWID----RLPIRQNLRCTVKTRYRQKDVACEVIPINDDCIEVRFDE 353

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            ++ V  GQ+ VFY  +      LGGG+I    +
Sbjct: 354 PQIAVTPGQSAVFYQGEV----CLGGGVIERQIK 383


>gi|251798335|ref|YP_003013066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. JDR-2]
 gi|247545961|gb|ACT02980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. JDR-2]
          Length = 377

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 199/388 (51%), Gaps = 25/388 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K+ ++ RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++    +   G C A +D 
Sbjct: 1   MVKSKQETRVVVGMSGGVDSSVTALLLKQQGYDVVGIFMKNWDD---TDEFGHCTAEEDA 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D RRVCD I + +Y  ++E+++ + V   F   Y  G TP P V CNR +KF D L   
Sbjct: 58  EDVRRVCDQIGIPYYTVNFEKQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGDFLKKA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY R      +DG+ R  + R +D  +DQ+YFL A  Q+QL    FP+G
Sbjct: 118 NELGADYLATGHYARVERN--EDGETR--LLRGVDGNKDQTYFLSALNQKQLEKAMFPIG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
            + K  VR +A E GL  A K DS  +CF+ +  + + +       A  GD+V + +G++
Sbjct: 174 HLPKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNFKEFLSGYLP--ARPGDMVDIRSGEV 231

Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            GRH+G++ YT+GQR+     G   GEP FV   D   + + V       SL    +   
Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGESHPSLYSTGLTAS 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
            +NW+     E      F+C  K R  Q    V V    D    V F+  +  +  GQA 
Sbjct: 292 GMNWIAPLRPE----GTFRCTAKFRYRQPDQGVSVTLHTDGTAEVVFDYPQKAITPGQAV 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVE 393
           V Y  D      L GG I    + D   
Sbjct: 348 VLYDGDV----CLAGGTIDIVHKIDQAA 371


>gi|209695634|ref|YP_002263563.1| tRNA-specific 2-thiouridylase MnmA [Aliivibrio salmonicida LFI1238]
 gi|208009586|emb|CAQ79882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 195/382 (51%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A +D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119

Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           L AD +A GHY+R      +D     +  M R +D  +DQSYFL+  + +Q+    FP+G
Sbjct: 120 LDADFIAMGHYVRRTFPTAEDIANGAKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR +A+E  L  A K DS  ICF+ + K+ + + +     A  G+I    G+++
Sbjct: 180 DLEKPEVRRIAQEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237

Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRI 303
           G+H G++ +T+GQR+GL +          +P FV   D   + +  + G     L+   +
Sbjct: 238 GQHQGLMYHTLGQRKGLHIGGSKGGGGNEDPWFVGEKDLKRNVLIAVQGHDHPLLKSQGL 297

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
              +++W+       A+     C VK R  Q  +P  +   DD  + V F + ++ V  G
Sbjct: 298 LASQLDWVD----RTAIKAPLSCTVKTRYRQTDIPCTIIPIDDENIKVIFNEPQIAVTPG 353

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ VFY+ +      LGGGII 
Sbjct: 354 QSAVFYSGEI----CLGGGIIE 371


>gi|307553134|gb|ADN45909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ABU 83972]
          Length = 368

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 195/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+   + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|209884347|ref|YP_002288204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oligotropha carboxidovorans OM5]
 gi|229486419|sp|B6JCC3|MNMA_OLICO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209872543|gb|ACI92339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oligotropha carboxidovorans OM5]
          Length = 393

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 212/381 (55%), Positives = 269/381 (70%), Gaps = 4/381 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P   RVVVAMSGGVDSS  AALLK +GYDVIG+TLQLY+  +A+ RKG+CC
Sbjct: 2   LNSLDLEGPPSSTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGEATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SYA GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYALGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGA  LATGHY+ SR          R M    D +RDQSYFLFATTQ QL  L
Sbjct: 122 LLTTAQELGAQALATGHYVASRRQPD----GSRAMVCAADADRDQSYFLFATTQDQLNHL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR   L +A+K DSQDICFV  G+Y DV++R+     L GDIV L
Sbjct: 178 RFPLGDMTKAQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMRPNAMLPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G++LG H GI N+T+GQRRG+G+A   PL+VV LD  S +VIVGPR +L  + I LR+I
Sbjct: 238 RGRVLGHHQGIANFTVGQRRGIGIAASMPLYVVALDAASRQVIVGPRAALRKNLITLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG F+D   +G   ++K+RS++ P P  ++ N D   V+    E GV+ GQACVFY
Sbjct: 298 NWIGDGTFDDVAREGRDLYIKVRSTRPPQPAHLRMNGDHCEVELFAGEEGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRS 389
            + + +ARVLGGG I+ +  +
Sbjct: 358 DAPTGQARVLGGGFITHASNN 378


>gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
 gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
          Length = 370

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 200/387 (51%), Gaps = 25/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     +  + R  DL +DQ+YFL   T++ L  + FPLG++ K+
Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  +   +K      A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLP--AQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G   V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LG  +I    + DA   ++ S
Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370


>gi|88860122|ref|ZP_01134761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas tunicata D2]
 gi|88818116|gb|EAR27932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas tunicata D2]
          Length = 366

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 195/382 (51%), Gaps = 28/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +++V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSNIKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VC+ + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCEKLGIPLHTVNFASEYWDNVFQYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAAEA 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +ATGHY+R  L        + +M R  D  +DQSYFL+  + + L    FP+G++
Sbjct: 120 LNADFIATGHYVRRELRGD-----KYVMIRGDDDNKDQSYFLYTLSHEHLAQTLFPVGEI 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L   DK DS  ICF+ + K+ D +++     A  G I   +G ++G 
Sbjct: 175 EKPEVRRIAEEQNLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGKIEDTDGNVVGD 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GL +       GEP +VV  D   + ++VG       L  + +   +
Sbjct: 233 HEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLIRNVLVVGQGKDHPRLYSNGLMANQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           ++W+             +C VK R  Q  +P  +   DDG   V F++ E  V  GQ+ V
Sbjct: 293 LHWVD----RVGPKTTLRCTVKTRYRQTDLPCTLLVGDDGYARVLFDQPEKAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
           FY ++      LGGGII    +
Sbjct: 349 FYLNEV----CLGGGIIDSVIK 366


>gi|331006794|ref|ZP_08330060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC1989]
 gi|330419412|gb|EGG93812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC1989]
          Length = 426

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 208/380 (54%), Gaps = 26/380 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P++ RV+V MSGGVDSSV A LL++ GY V G+ ++ ++    ++    C A  D+ DA+
Sbjct: 58  PQETRVMVGMSGGVDSSVTALLLQQQGYLVEGLFMKNWDEDDGTE---YCSAKDDLADAQ 114

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RVCDT+ ++ +  ++   + + V   F   Y AG TP P + CNR +KF   L   + LG
Sbjct: 115 RVCDTLGITLHTANFAAEYWDNVFEYFLDEYKAGRTPNPDILCNREIKFKVFLDYAQVLG 174

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY+R   Y  ++      + +  D  +DQSYFL A   +QL    FP+G+++K
Sbjct: 175 ADMIATGHYVRRDDYF-NNSAGSTRLLKGCDNNKDQSYFLHAVGGEQLAKTLFPVGELEK 233

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR LA +  L   +K DS  ICF+ + ++ D +++     A EG+IV   GQ++G+H 
Sbjct: 234 PAVRLLAEQHNLITHNKKDSTGICFIGERRFKDFLEQYLP--AQEGEIVTDKGQVIGKHA 291

Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+         P +VV  D + +++IV        L   R+   +++
Sbjct: 292 GLMYHTMGQRQGLGIGGVKNAPDAPWYVVDKDLDKNQLIVVQGDQHPLLYHQRLTATDMH 351

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQAC 365
           W+     +DAV   F+C  KIR  Q      V      ND  + V F++ +  V  GQ+ 
Sbjct: 352 WINPSD-QDAV---FRCHAKIRYRQADQACEVTVSRDNNDSSISVIFDEPQRAVTPGQSI 407

Query: 366 VFYTSDSNEARVLGGGIISG 385
           V Y  +      LGG +I+ 
Sbjct: 408 VLYDGE----HCLGGAVIAS 423


>gi|313884882|ref|ZP_07818634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619573|gb|EFR31010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 374

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 192/378 (50%), Gaps = 26/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV+V MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D   
Sbjct: 4   KKARVIVGMSGGVDSSVAALLLKEAGYDVIGLFMKNWDD---TDENGVCTATEDYKDVAL 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGA
Sbjct: 61  VAEKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY +    V  D      + R +D  +DQ+YFL   +Q QL    FPLG ++K 
Sbjct: 121 DYVAMGHYAQ----VETDADGTVHLLRGLDDNKDQTYFLSQLSQDQLKKSLFPLGHLQKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A + GL  A K DS  +CF+ +  + + +          G +V L+GQI+G H G
Sbjct: 177 QVREIAEKAGLATAKKKDSTGVCFIGERNFNEFLSNYLPN--KSGKMVTLDGQIMGDHAG 234

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           ++ YTIGQR GLG+       EP FVV  D  ++ + VG      +L    +   +I++ 
Sbjct: 235 LMYYTIGQRHGLGIGGGGESNEPWFVVGKDLETNTLYVGQGYHHPNLYSDYLDASQIHFT 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369
            D      +   F+C  K R  Q  V V V  N+D     V F+     +  GQA VFY 
Sbjct: 295 VDRD----MPQEFECTAKFRYRQKDVKVKVVLNEDQESGRVYFQDPVRAITPGQAVVFYD 350

Query: 370 SDSNEARVLGGGIISGSK 387
                   LGGGII  + 
Sbjct: 351 G----LECLGGGIIDAAY 364


>gi|182679942|ref|YP_001834088.1| tRNA-specific 2-thiouridylase MnmA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|205813049|sp|B2IBH3|MNMA_BEII9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|182635825|gb|ACB96599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 431

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/392 (55%), Positives = 284/392 (72%), Gaps = 9/392 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSL L K P   RVVVAMSGGVDSSVVAALLKR+GY+VIGVTLQLY+  +A  RKG+CC
Sbjct: 18  LNSLGLPKPPALTRVVVAMSGGVDSSVVAALLKREGYEVIGVTLQLYDHGEAVHRKGACC 77

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DAR+V D + + HYV DYEERFR  VI PFA SYA GETP+PCV CN  +KF+D
Sbjct: 78  AGQDIQDARQVADQLGIPHYVLDYEERFRRKVIDPFAQSYATGETPIPCVSCNSEIKFAD 137

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L    + LGADVLATGHY+ S+     +    R + R +D  RDQSYFLFATT  QL  L
Sbjct: 138 LFETAQHLGADVLATGHYVSSK----AEADGGRALYRSLDSSRDQSYFLFATTNAQLELL 193

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGD+ K  VR +AR++GL +ADK+DSQDICFV  GKY DV++R++ G  + G+I+H+
Sbjct: 194 RFPLGDLAKPDVRQMARQLGLVVADKADSQDICFVPSGKYSDVIERLSPGAVVPGEILHV 253

Query: 249 NGQILGRHNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +G++LGRH+G+I+YTIGQRR      +G   GEPL+V+ LD   ++VIVGPR++L   R+
Sbjct: 254 DGRVLGRHSGVIHYTIGQRRGLGLGAVGAGAGEPLYVIRLDAAKAQVIVGPRQALATRRV 313

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
           +LR +NW+G G  +D    G + FV++RS++ P+P F+  ++  ++VDF   E GV+ GQ
Sbjct: 314 HLRGVNWIGPGSLQDMDEHGLEIFVQVRSTRAPIPGFLHAHESEIWVDFALDEDGVSPGQ 373

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
           ACVFY +D   ARVLGGG IS ++ +  + E 
Sbjct: 374 ACVFYENDQPRARVLGGGFISATESALQMREM 405


>gi|20807693|ref|NP_622864.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Thermoanaerobacter tengcongensis MB4]
 gi|24638309|sp|Q8RAH7|MNMA1_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|20516242|gb|AAM24468.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Thermoanaerobacter tengcongensis MB4]
          Length = 364

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 215/372 (57%), Gaps = 14/372 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDAR 77
           + RVVV MSGGVDSSV A LLK  G++VIGVT++++     KA     SCC+ + ++DA+
Sbjct: 4   NNRVVVGMSGGVDSSVTAYLLKEQGFEVIGVTMRVWVDPYGKARDDDKSCCSLKAIHDAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + + + HY  +  E F + ++  F   Y  G TP PCV CNR +KF DLL    +LG
Sbjct: 64  KVAEILGIPHYTVNLSEVFYDKIVKYFIDEYLKGRTPNPCVFCNRFIKFGDLLEKAHELG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R      D+ ++R ++ + +D ++DQSY L+  TQ+QL    FPLG+  K
Sbjct: 124 AYYIATGHYVRKEY---DEDRKRYLLKKGLDFKKDQSYMLYRLTQEQLKHALFPLGNYTK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR LA ++GL +ADK +SQ+ICF+    Y   +KR        G+   ++G  LG H 
Sbjct: 181 EEVRALAEKIGLPVADKRESQEICFIPDNDYKAFIKRQIKKDVKPGEFRDIHGNFLGYHK 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GIINYTIGQR+GLG++   PL+VV +D  ++ VIVG +E +    +     N++      
Sbjct: 241 GIINYTIGQRKGLGLSSDRPLYVVDIDPENNVVIVGHQEDVWGEELISSNNNFISI---- 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + + +  K   KIR +       ++   DD V V F + +  +  GQ+ VFY  D     
Sbjct: 297 EKLEEEIKVTAKIRYTAKEDEAIIKPYGDDKVLVRFLRPQRAITPGQSVVFYDGDV---- 352

Query: 377 VLGGGIISGSKR 388
           V+GGGII    R
Sbjct: 353 VVGGGIIEKKVR 364


>gi|295402096|ref|ZP_06812056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975878|gb|EFG51496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 370

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 200/387 (51%), Gaps = 25/387 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++    +   G C A +D  D +R
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++E+ + + V   F      G TP P V CN  +KF   +     L A
Sbjct: 59  VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     +  + R  DL +DQ+YFL   T++ L  + FPLG++ K+
Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E+ L  A+K DS  ICF+ +  +   +K      A  G+I  L+G++LG H+G
Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLP--AQPGEIRSLDGEVLGTHDG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           ++ YTIGQR+     G   GEP +VV  D  ++ ++V       +L    +    I+++ 
Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                D     F C  K R  Q+   V V    +G   V+FEK    V  GQ  VFY +D
Sbjct: 292 G----DVRPCTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398
                 LG  +I    + DA   ++ S
Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370


>gi|170751444|ref|YP_001757704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
 gi|205816882|sp|B1LV15|MNMA_METRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170657966|gb|ACB27021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 384

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 213/389 (54%), Positives = 273/389 (70%), Gaps = 10/389 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LDL K P + RVVVAMSGGVDSSVVA LLKR G+DV+GVTLQLY+   AS RKG+CC
Sbjct: 1   MNALDLPKAPHETRVVVAMSGGVDSSVVAGLLKRQGFDVVGVTLQLYDHGAASHRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR   + + + HYV DYE+RFR+ VI  FA SY AGETP+PCV+CNRTVKF D
Sbjct: 61  AGQDIHDARAAAEHLGIPHYVLDYEDRFRDEVIEKFAESYLAGETPIPCVECNRTVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R L AD LATGHY+ SR   G      R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLGLARDLDADALATGHYVASRALPG----GGRALHRALDPARDQSYFLYATTAEQLDFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+M+K   R LA+E+GL +A+K DSQDICFV QG+Y DV+ R+    A  G+IV L
Sbjct: 177 RFPLGEMEKTETRALAKELGLSLAEKPDSQDICFVPQGRYSDVIARLRPDAARPGEIVDL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G +LGRH+GI++YT+GQR+GLG++  EPL+VV L+ +++RV+VGPR +L   RI L ++
Sbjct: 237 DGHVLGRHDGIVHYTVGQRKGLGLSGPEPLYVVRLEPDAARVVVGPRTALATTRIRLSDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           NWLG+G  E   V      V++RS++ P P  +    DG V V   + E GV+ GQAC  
Sbjct: 297 NWLGEGPAE--AVRDLPVAVRVRSTRPPRPATLTVGPDGAVEVVLAEPEDGVSPGQACAI 354

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y  D   ARVLGGG I   +R DA+    
Sbjct: 355 YADDGPRARVLGGGTI---RRVDALSARP 380


>gi|293414424|ref|ZP_06657073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B185]
 gi|291434482|gb|EFF07455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B185]
          Length = 368

 Score =  488 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRV-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
                  LGGGII 
Sbjct: 352 KV----CLGGGIIE 361


>gi|170727050|ref|YP_001761076.1| tRNA-specific 2-thiouridylase MnmA [Shewanella woodyi ATCC 51908]
 gi|205816913|sp|B1KID0|MNMA_SHEWM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169812397|gb|ACA86981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella woodyi ATCC 51908]
          Length = 377

 Score =  488 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 128/398 (32%), Positives = 202/398 (50%), Gaps = 32/398 (8%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + E T      L +   + +V+V MSGGVDSSV A LL + GY V G+ ++ +     
Sbjct: 1   MAIIEPTA----ALIEPTANKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 56

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 57  DE---YCAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 113

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      L AD +A GHY+R       D   +  M R +D  +DQSYFL+ 
Sbjct: 114 NKEIKFKAFLEFADDILDADYIAMGHYVRRS-----DDSGQSQMLRGIDGNKDQSYFLYT 168

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VR++A+EMGL   DK DS  ICF+ + K+ D +       
Sbjct: 169 LSHEQVSRSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP-- 226

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294
           A  G+I    G+++G H G++ +T+GQR+GLG+        +P +VV  + + + ++VG 
Sbjct: 227 AQPGNIETAEGEVIGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 286

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYV 350
                 L     Y  +++W+          +G K  VK R  Q  V   +  + +D V V
Sbjct: 287 GGNHPRLMSTGFYADQLHWVD----RIGPDNGAKITVKTRYRQRDVACSLHYDGEDRVKV 342

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            F++    V  GQ+ VFY ++      LGGGII    R
Sbjct: 343 LFDEPVAAVTPGQSAVFYDAEV----CLGGGIIDSLIR 376


>gi|294636777|ref|ZP_06715115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda ATCC 23685]
 gi|291089992|gb|EFE22553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda ATCC 23685]
          Length = 376

 Score =  488 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 198/386 (51%), Gaps = 28/386 (7%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           +   L  +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A
Sbjct: 5   DCESLMSDNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNDE---YCSA 61

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   
Sbjct: 62  AADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAF 121

Query: 130 LSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L      LGAD +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+   
Sbjct: 122 LEFAAEDLGADYIATGHYVRRR-----DIDGTTQLLRGVDANKDQSYFLYTLSHQQVAQS 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G+++K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I+ +
Sbjct: 177 LFPVGELEKPEVRRIATQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITV 234

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEV 300
           +GQ +G H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V        L  
Sbjct: 235 DGQEIGEHQGLMYHTLGQRKGLGIGGTKEGNEEPWYVVDKDVANNVLLVAQGHDHPRLFS 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGV 359
           + +  ++++W+        +    +C VK R  Q  +P  V   DD  + V F++    V
Sbjct: 295 NGLIAQQLHWVD----RRPLTAELRCTVKTRYRQADIPCRVIPIDDTRIEVRFDQPVAAV 350

Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385
             GQ+ VFY  +      LGGGII  
Sbjct: 351 TPGQSAVFYQDEV----CLGGGIIEA 372


>gi|222032885|emb|CAP75625.1| hypothetical protein LF82_1359 [Escherichia coli LF82]
 gi|312945695|gb|ADR26522.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 368

 Score =  488 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 195/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +   +++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIALQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|257453848|ref|ZP_05619126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enhydrobacter aerosaccus SK60]
 gi|257448775|gb|EEV23740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  488 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/391 (33%), Positives = 205/391 (52%), Gaps = 24/391 (6%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           +T +N  D+  +P   RV+V MSGGVDSSV A LLK+ G+DV G+ ++ +     ++   
Sbjct: 4   STAVNLSDIA-SPAQTRVIVGMSGGVDSSVTAVLLKQAGFDVEGLFMKNWEEDDGTE--- 59

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C A  D+ DA+ V D I +  +  ++   + + V   F + Y+AG TP P + CN+ VK
Sbjct: 60  YCTAMTDLADAQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYSAGRTPNPDILCNKEVK 119

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F   L     LGAD +ATGHY R       D   +  + R +D  +DQSYFL A    ++
Sbjct: 120 FKAFLDYALTLGADYIATGHYARRGFS---DETGKAPLLRGLDNNKDQSYFLHAVAGDKI 176

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G ++K  VR +A +  L  A K DS  ICF+ + ++ D +++     A +GDI
Sbjct: 177 AKTLFPVGALEKPEVRRIAEQYDLATAKKKDSTGICFIGERRFKDFLQQYLP--AQKGDI 234

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RES 297
              +G+ +G H+G++ YT+GQR G+G+         P FV++ D +++R+IVG       
Sbjct: 235 YTDDGKKIGTHDGLMYYTLGQRGGIGIGGVKDRDEAPWFVLHKDLDNNRLIVGQGHDHPM 294

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEK 354
           L+   +   +++W+ D   +     G++C  K R  Q      V       D + V F++
Sbjct: 295 LQSTELTAYKLDWVVDAPAQLFTAQGYRCTAKTRYRQPDQACTVFALDETGDTIKVVFDE 354

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            +  V  GQ+CVFY  D      LGGG+I  
Sbjct: 355 PQRAVTPGQSCVFYQDDI----CLGGGVIET 381


>gi|56963351|ref|YP_175082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus clausii KSM-K16]
 gi|81366419|sp|Q5WHN4|MNMA_BACSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56909594|dbj|BAD64121.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus clausii KSM-K16]
          Length = 364

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/381 (35%), Positives = 205/381 (53%), Gaps = 23/381 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  +D RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    S   G C A +D  D
Sbjct: 2   KKREDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---SNDSGFCSATEDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   + + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L+    
Sbjct: 59  VERVAQQLGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAIS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY + +   G+       + +  D  +DQ+YFL A +Q+QL  + FPLG +
Sbjct: 119 LGADYVATGHYAQLQELDGE-----YRLIKGADANKDQTYFLNALSQKQLSKVMFPLGHL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ +  + + ++      A  G +  ++G   G+
Sbjct: 174 QKAEVRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLP--AQPGRMETMDGIDKGQ 231

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           H+G++ YT+GQR+GLG+   GEP FV+  D   + +IVG       L    ++  ++NW+
Sbjct: 232 HDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                ++     F C  K R  Q+   V V   +DG  ++ F++ +  +  GQA V Y  
Sbjct: 292 A----KEERTSPFTCKAKFRYRQEDQGVTVFPKEDGRAFIQFDQPQRAITPGQAVVLYEG 347

Query: 371 DSNEARVLGGGIISGSKRSDA 391
           D    R +GGG+I    R +A
Sbjct: 348 D----RCIGGGVIDKIHRENA 364


>gi|220925891|ref|YP_002501193.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium nodulans ORS
           2060]
 gi|254811453|sp|B8IU32|MNMA_METNO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219950498|gb|ACL60890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium nodulans ORS 2060]
          Length = 382

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/388 (55%), Positives = 270/388 (69%), Gaps = 11/388 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P+D RVVVAMSGGVDSSVVA LLKR GYDV+G+TLQLY+   A+ R+G+CC
Sbjct: 1   MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLKRQGYDVVGITLQLYDHGAATHRRGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARR  +T+ + HYV DYE+RFR AVI  FA SY  GETP+PCV+CNR++KF D
Sbjct: 61  AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFADSYIHGETPIPCVECNRSIKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+    LGAD LATGHY+ SR   G      R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLATALDLGADALATGHYVASRPRPG----GSRALYRALDPARDQSYFLYATTAEQLDVL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K+  R LARE GL +ADK DSQDICFV QG+Y DV+ R+       G+IVHL
Sbjct: 177 RFPLGELPKDETRRLAREFGLSVADKPDSQDICFVPQGRYQDVIARLRPDSVRPGEIVHL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH+GII +T+GQRRGL +A GEPL+VV LD  ++RV+VGPRE+L    I L E 
Sbjct: 237 DGRTLGRHDGIIGFTVGQRRGLKLATGEPLYVVRLDPETARVVVGPREALATSVIRLAET 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACV 366
           NWLGD    +  +DG    V++RS+++P P  ++  R      V     E GV+ GQAC 
Sbjct: 297 NWLGDEPLTE--LDGMPVAVRVRSTREPRPATLRWNRAASCAEVMLATPEDGVSPGQACA 354

Query: 367 FYTSDSNEARVLGGGII---SGSKRSDA 391
            Y  +   ARVLGGG I     S+R  A
Sbjct: 355 IYADEGPRARVLGGGTILRVEASRREAA 382


>gi|167553799|ref|ZP_02347544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321840|gb|EDZ09679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 368

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQLGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEV----CLGGGIIE 361


>gi|296388914|ref|ZP_06878389.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAb1]
 gi|313107663|ref|ZP_07793846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa 39016]
 gi|310880348|gb|EFQ38942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa 39016]
          Length = 363

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 26/375 (6%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ DA+ VCD I
Sbjct: 2   IVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADAQAVCDRI 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD++AT
Sbjct: 59  GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIAT 118

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR +
Sbjct: 119 GHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAI 173

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A + GL  A K DS  ICF+ + ++ D +K+     A  GDI    G+++GRH+G++ +T
Sbjct: 174 AEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRHSGLMYHT 231

Query: 264 IGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+        +P +V+  D   + ++VG       L    +    I W+    
Sbjct: 232 IGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVE 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            E       +   K+R  Q      +++  +G    F++ +  V  GQ+ VFY  D    
Sbjct: 292 LERP----RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVVFYDGDV--- 344

Query: 376 RVLGGGIISGSKRSD 390
             LGGG+I  ++  D
Sbjct: 345 -CLGGGVIETAEAWD 358


>gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella benthica KT99]
 gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella benthica KT99]
          Length = 376

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 121/388 (31%), Positives = 198/388 (51%), Gaps = 32/388 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
                  +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ 
Sbjct: 6   PTANSSKKVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMKNWEEDDTDE---YCAAADDLK 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    
Sbjct: 63  DAQAVCDKLGIKLHTVNFAAEYWDKVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFAD 122

Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + L AD +A GHY+R       D   +  M R +D  +DQSYFL+  + +Q+    FP+G
Sbjct: 123 EILDADYIAMGHYVRRC-----DETGQSRMLRGVDGNKDQSYFLYTLSHEQIARSLFPVG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR++A+EMGL   DK DS  ICF+ + K+ D ++      A  G+I    G+++
Sbjct: 178 ELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLP--AQPGNIETAEGEVI 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H G++ +T+GQR+GLG+        +P +VV  + + + ++VG       L     Y 
Sbjct: 236 GKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSMGFYA 295

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVA 360
            +++W+         ++  +  VK R  Q  V   +      + +D + V F++    V 
Sbjct: 296 DQLHWVD----RKGPINEARITVKTRYRQRDVACTLFLENNDKGEDTIRVLFDEPVAAVT 351

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKR 388
            GQ+ VFY+ +      LGGGII    R
Sbjct: 352 PGQSAVFYSDE----LCLGGGIIDSLIR 375


>gi|326794627|ref|YP_004312447.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
 gi|326545391|gb|ADZ90611.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
          Length = 371

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 194/381 (50%), Gaps = 26/381 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++  +   + +V+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +
Sbjct: 1   MNSSEQNSNTKVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTE---YCTAKE 57

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L 
Sbjct: 58  DLADAQAVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLE 117

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               L AD +ATGHY+R     G D     ++ + +D  +DQSYFL+A  + ++    FP
Sbjct: 118 YAMALKADYIATGHYVRK----GFDENGNALLLKGLDNNKDQSYFLYAVGKGEIAKTFFP 173

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR LA E  L   +K DS  ICF+ + ++ D +++     A  GDI  L G 
Sbjct: 174 VGELEKPEVRRLAEEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETLEGD 231

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303
            +GRH+G++ +TIGQR+GLG+        EP +VV  D   + + V   G   SL    +
Sbjct: 232 KIGRHHGLMYHTIGQRQGLGIGGLSKYPDEPWYVVAKDLERNVLQVTQGGQHPSLYKTHL 291

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362
                +W+      +       C  K R  Q      + +  D  + V F + +  +  G
Sbjct: 292 IADNFDWVA----REKPSLPLTCKAKCRYRQPDQDCTISELKDGRIEVSFSEPQRAITPG 347

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ VFY  ++     LGGGII
Sbjct: 348 QSVVFYLDEN----CLGGGII 364


>gi|121535962|ref|ZP_01667756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosinus carboxydivorans Nor1]
 gi|121305454|gb|EAX46402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosinus carboxydivorans Nor1]
          Length = 364

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 151/372 (40%), Positives = 212/372 (56%), Gaps = 14/372 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDAR 77
             RVVVAMSGGVDSS+ AALL   GYDVIGVT+Q++ +   +       CC+   V DAR
Sbjct: 4   KPRVVVAMSGGVDSSLTAALLVHQGYDVIGVTMQIWENDLPEIDPEHRGCCSLSAVNDAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D + + +YV ++ E F+  V+  F   YAAG+TP PC+ CNR VKF  LL     L 
Sbjct: 64  RVADKLGIPYYVLNFREMFQETVVDYFIREYAAGKTPNPCIACNRYVKFEGLLQKALALD 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY R      D G+ R I+ + +D  +DQSY L+   Q  L     PLG+  K
Sbjct: 124 AQYVATGHYARIEY---DKGRGRYILRKGVDRTKDQSYALYHLNQHTLRHFLMPLGEYTK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
              R +AR+ GL +A+K DSQ+ICF+    Y   ++         G+IV  +G+ILGRH 
Sbjct: 181 VQTRQMARQFGLAVAEKPDSQEICFIPNDDYKSFLEEKAPETLRPGNIVDTHGRILGRHK 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YT+GQR+GLG+A+G+PL+VV LD   + VIVG  E +    +   ++N++      
Sbjct: 241 GLPLYTVGQRKGLGIAVGKPLYVVALDYERNEVIVGSDEDVFASELIAEDLNFITV---- 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR S    P  +    +G VYV F++ +  +  GQ+ VFY  D+    
Sbjct: 297 DKLASPLRVAAKIRYSAREAPATITPEREGAVYVRFDEPQRAITPGQSVVFYDGDT---- 352

Query: 377 VLGGGIISGSKR 388
           V+GGGII  + R
Sbjct: 353 VVGGGIIRKAIR 364


>gi|299131958|ref|ZP_07025153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Afipia sp. 1NLS2]
 gi|298592095|gb|EFI52295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Afipia sp. 1NLS2]
          Length = 393

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 213/378 (56%), Positives = 266/378 (70%), Gaps = 4/378 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P   RVVVAMSGGVDSS  AALLK +GYDVIG+TLQLY+   A+ RKG+CC
Sbjct: 2   LNSLDLEGPPSGTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGAATHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA SY  GETP+PC++CNR+VKF D
Sbjct: 62  AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYVLGETPVPCIECNRSVKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R+LGA  LATGHY+ SR          R M    D +RDQSYFLFATTQ QL DL
Sbjct: 122 LLTTARELGAKALATGHYVASRRQAD----GSRAMVCAADADRDQSYFLFATTQDQLNDL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR   L +A+K DSQDICFV  G+Y DV++R+       GDIV L
Sbjct: 178 RFPLGDMTKTQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMKPNALQPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G++LG H GI+N+TIGQRRG+G+A  EPL+VV LD  + RVIVGPR +L    I LR+I
Sbjct: 238 RGRVLGHHQGIVNFTIGQRRGIGIAAAEPLYVVALDAAARRVIVGPRAALRKSVITLRDI 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GDG FE A  +G   ++K+RS++ P    ++ N D   V+    E G++ GQACVFY
Sbjct: 298 NWIGDGSFERAATEGRDLYIKVRSTRPPQAAHLRMNGDHCEVELLAGEEGISPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGS 386
            + + +ARVLGGG I+ +
Sbjct: 358 DAPAGQARVLGGGFITHA 375


>gi|317047745|ref|YP_004115393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. At-9b]
 gi|316949362|gb|ADU68837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. At-9b]
          Length = 370

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 198/386 (51%), Gaps = 28/386 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADFIATGHYVRRQ-----DIDGQSRLLRGLDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I  ++G+I+G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGAIETVDGEIVGE 232

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D   +R+IV   G    L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKESNDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +P   +   DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392
           FY  D      LGGGII       A 
Sbjct: 349 FYLGDV----CLGGGIIEQRLPWAAA 370


>gi|21911376|ref|NP_665644.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS315]
 gi|28896748|ref|NP_803098.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes SSI-1]
 gi|25091447|sp|Q8K5H5|MNMA_STRP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21905592|gb|AAM80447.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus
           pyogenes MGAS315]
 gi|28812002|dbj|BAC64931.1| putative tRNA-(5-methylaminomethyl-2- thiouridylate) [Streptococcus
           pyogenes SSI-1]
          Length = 373

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 194/382 (50%), Gaps = 25/382 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D   V D 
Sbjct: 9   VVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWHD---TDEFGVCTATEDYKDVAAVADQ 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     LGAD +A
Sbjct: 66  IGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVA 125

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++K  VR+
Sbjct: 126 TGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEVRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H G++ Y
Sbjct: 182 IAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLMYY 239

Query: 263 TIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           TIGQR GLG+        +P FVV  D + + + VG     E+L  + +    I++  + 
Sbjct: 240 TIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTREM 299

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E      F+C  K R  Q    V V    D   V F + +  +  GQA VFY      
Sbjct: 300 PEE----FTFECTAKFRYRQPDSHVRVHVRGDKAEVVFAEPQRAITPGQAVVFYDG---- 351

Query: 375 ARVLGGGIISGSKRSDAVEESL 396
              LGGG+I  + ++    + +
Sbjct: 352 KECLGGGMIDMAYKNGQPCQYI 373


>gi|87162110|ref|YP_494273.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87128084|gb|ABD22598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|298694901|gb|ADI98123.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 361

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 196/369 (53%), Gaps = 20/369 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   VC+ I + 
Sbjct: 1   MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     LGAD +ATGHY
Sbjct: 58  YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R   +          M R +D  +DQ+YFL   +QQQL  + FP+GD++K  VR +A E
Sbjct: 118 ARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEE 173

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +G+H+G++ YTIGQ
Sbjct: 174 QGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSGLMYYTIGQ 231

Query: 267 RRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           R GLG+   G+P FVV  +   + + V      ++L    +   + +++     ++ +  
Sbjct: 232 RHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPE--DNDLDQ 289

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY  D      LGG 
Sbjct: 290 GFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDV----CLGGA 345

Query: 382 IISGSKRSD 390
            I    +++
Sbjct: 346 TIDDVFKNE 354


>gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners DSM 13335]
 gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1]
 gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 11V1-d]
 gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners ATCC 55195]
 gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 143-D]
 gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 1401G]
 gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners DSM 13335]
 gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners ATCC 55195]
 gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 143-D]
 gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 1401G]
          Length = 375

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   TQ+QL    FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVT----DENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H
Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E++
Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VF
Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKR 388
           Y  +      LGG II  + R
Sbjct: 351 YDGE----ECLGGAIIDKAYR 367


>gi|330503284|ref|YP_004380153.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01]
 gi|328917570|gb|AEB58401.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01]
          Length = 362

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 191/372 (51%), Gaps = 26/372 (6%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGGVDSSV A LL   GY V G+ ++ ++    ++    C A  D+ DA+ VCD I
Sbjct: 2   IVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLADAQAVCDRI 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGAD++AT
Sbjct: 59  GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIAT 118

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY+R R     D   R  + + +D  +DQSYFL A    Q+    FP+G+++K  VR +
Sbjct: 119 GHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGVQIAKTLFPVGELEKPQVRAI 173

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A +  L  A K DS  ICF+ + ++ D +K+     A  GDI    GQ++GRH+G++ +T
Sbjct: 174 AEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGRHHGLMYHT 231

Query: 264 IGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+        +P +V+  D   + +IVG       L    +   EI W+    
Sbjct: 232 IGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNAHPWLFSRALLASEIYWVNPVD 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    +   K+R  Q      +++ + G    F++ +  V  GQ+ VFY  +    
Sbjct: 292 LSSP----RRLTAKVRYRQSDQLCTLEKTETGYRAVFDEPQRAVTPGQSVVFYDGEV--- 344

Query: 376 RVLGGGIISGSK 387
             LGGG+I  ++
Sbjct: 345 -CLGGGVIETAE 355


>gi|161486247|ref|NP_753421.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CFT073]
 gi|30173414|sp|Q8CXZ8|MNMA_ECOL6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L AD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLCAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       DGK R  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRAXV---DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+   + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|308186449|ref|YP_003930580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Pantoea vagans C9-1]
 gi|308056959|gb|ADO09131.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Pantoea vagans C9-1]
          Length = 370

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LGADFIATGHYVRRK-----DVDGQSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G+I    GQI+G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D   +R+IV   G    L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +P   + + DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQPITAPLRCTVKTRYRQTDIPCEIIPQGDDRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D      LGGGII 
Sbjct: 349 FYLGDV----CLGGGIIE 362


>gi|308049705|ref|YP_003913271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ferrimonas balearica DSM 9799]
 gi|307631895|gb|ADN76197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ferrimonas balearica DSM 9799]
          Length = 367

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 194/382 (50%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + ++ +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A QD+ DA
Sbjct: 3   DNRNKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDTEE---YCAASQDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + 
Sbjct: 60  QAVCDKLGIELHSVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEA 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R         +  M R +D  +DQSYFL+    + +    FP+G++
Sbjct: 120 LGADYIATGHYVRRRQR----EDGQFEMLRGLDGNKDQSYFLYTLGHEHVAQTLFPVGEL 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E  L  A K DS  ICF+ + K+ D + +     A  GDI    G+++G+
Sbjct: 176 EKPEVRRIAEEQDLITAGKKDSTGICFIGERKFKDFLAKYLP--AQPGDIETTEGEVIGQ 233

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +T+GQR+GL +         P +VV  D   + +IVG       L  + +   +
Sbjct: 234 HDGLMYHTLGQRKGLRIGGLKDAGEAPWYVVDKDLERNVLIVGQGADNPRLFSNGLVANQ 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           ++W+     +   V      VK R  Q  +P  V    DG + V F +    V  GQ+ V
Sbjct: 294 LHWVDRTGPQGETV----VSVKTRYRQQDIPCTVTPLADGELEVRFHEPVSSVTPGQSAV 349

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
           FY  D      LGGGII    R
Sbjct: 350 FYQGDV----CLGGGIIDRVIR 367


>gi|331091036|ref|ZP_08339878.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405258|gb|EGG84794.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 360

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 202/368 (54%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAHLLKEQGYDVIGVTMQIWQDEDRAIQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVAGQLEIPYYVMNFKKEFKKEVIDYFIEEYRQGRTPNPCIACNRYVKWESLLKRSMDI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + R   L +DQ+Y L+  TQ QL     P+G+  
Sbjct: 122 GADYIATGHYARIVKL----ENGRYTLKRSATLAKDQTYALYNLTQNQLSHTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A ++ L +A+K DSQDICFV  G Y   ++         G+ V LNG ILG+H
Sbjct: 178 KDEIRQIAEKIHLQVANKPDSQDICFVPDGDYASFIEETTGERIQTGNFVDLNGNILGQH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YT+GQR+GLG+++G P FV+ +   ++ V++G  E    + +    +N++     
Sbjct: 238 KGIIHYTVGQRKGLGLSLGRPAFVLEIRPETNEVVIGTNEDAMSYTLRANHLNFMSISDL 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E         F KIR +       +++  +D V   F++ +  +  GQA VFY  +    
Sbjct: 298 E----GEMHVFAKIRYNHKGAWCTIKKTSEDEVLCTFDEPQRAITPGQAVVFYDDE---- 349

Query: 376 RVLGGGII 383
            V+GGG I
Sbjct: 350 YVIGGGTI 357


>gi|312966389|ref|ZP_07780611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 2362-75]
 gi|312288842|gb|EFR16740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 2362-75]
          Length = 368

 Score =  486 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V +SGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGISGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G+
Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+
Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  D D + V F++    V  GQ+ VFY  
Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 352 EV----CLGGGIIE 361


>gi|125973240|ref|YP_001037150.1| tRNA-specific 2-thiouridylase MnmA [Clostridium thermocellum ATCC
           27405]
 gi|256003718|ref|ZP_05428706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 2360]
 gi|281417440|ref|ZP_06248460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum JW20]
 gi|205813738|sp|A3DDC8|MNMA_CLOTH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|125713465|gb|ABN51957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum ATCC 27405]
 gi|255992279|gb|EEU02373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 2360]
 gi|281408842|gb|EFB39100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum JW20]
 gi|316940529|gb|ADU74563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 1313]
          Length = 359

 Score =  486 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 210/368 (57%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76
              +V+V MSGGVDSSV AA+L   GY+VIG T+Q++       +  +G CC+   V DA
Sbjct: 2   SKKKVMVGMSGGVDSSVAAAILLEQGYEVIGATMQIWPDTDEETKLVEGGCCSLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V + + + +YV ++++ F  +VI  F   Y  G TP PC+ CNR VKF  +L+    +
Sbjct: 62  RSVANKLGIPYYVLNFKDIFEKSVINYFKDEYLKGRTPNPCIACNRFVKFESMLNKALSM 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY    +   DD K+R ++ + +  ++DQ+Y L+  TQ+QL  +  P+G+  
Sbjct: 122 GIDYIATGHYA---IITYDDNKKRYLLKKSVTQQKDQTYALYNVTQEQLKHILMPIGNFT 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE VR  A+E+GL +A K DSQ+ICFV    Y   ++         G  V   G ILG+H
Sbjct: 179 KEQVRAKAKELGLYVASKPDSQEICFVNDNDYGKFIEENTDKEIKPGYFVDTKGNILGKH 238

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YT+GQR+GLG+A+G+P++VV +D  ++ V++G    +    +   ++N++     
Sbjct: 239 RGIIHYTVGQRKGLGIALGKPMYVVRIDAENNTVVLGDENEVYSKELTAYDLNFISI--- 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D + +  +   KIR S       +   +DG V V F+  +  V  GQ+ VFY  D    
Sbjct: 296 -DKLEEPMRVKAKIRYSAKEADAVIYPLEDGKVRVVFDTPQRAVTPGQSVVFYDGDI--- 351

Query: 376 RVLGGGII 383
            V+GGGII
Sbjct: 352 -VVGGGII 358


>gi|283784944|ref|YP_003364809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter rodentium ICC168]
 gi|282948398|emb|CBG87986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter rodentium ICC168]
          Length = 368

 Score =  486 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G++ K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G IV ++G  
Sbjct: 171 GELSKPQVRKIAEDLELVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDE 228

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G+H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV        L    + 
Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+    F        +C VK R  Q  +P  V+  ++D + V F++    V  GQ
Sbjct: 289 AQQLHWVDRLPF----TGTMRCTVKTRYRQTDIPCTVKALDNDRIEVIFDEPVAAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY  +      LGGGII 
Sbjct: 345 SAVFYNGEV----CLGGGIIE 361


>gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 375

 Score =  486 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   TQ+QL    FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVT----DKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H
Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E++
Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VF
Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKR 388
           Y  +      LGG II  + R
Sbjct: 351 YDGE----ECLGGAIIDKAYR 367


>gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 375

 Score =  486 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   TQ+QL    FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVT----DKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H
Sbjct: 176 KPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTADGRIVGKH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E++
Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VF
Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKR 388
           Y  +      LGG II  + R
Sbjct: 351 YDGE----ECLGGAIIDKAYR 367


>gi|300723601|ref|YP_003712906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630123|emb|CBJ90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 367

 Score =  486 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAADDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 120 LGADYIATGHYVRRR-----DADGISQLLRGLDGNKDQSYFLYTLSHQQIAKSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G IV  +GQ +G+
Sbjct: 175 EKPEVRRIAEEIGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTEDGQTIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H+G++ +T+GQR+GLG+        +P +VV  +  ++ +IV        L    +  ++
Sbjct: 233 HSGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKELENNTLIVAQGHEHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+       ++    +C VK R  Q  +P  V   ++D + V F+     V  GQ+ V
Sbjct: 293 LHWVN----RQSLKTEIRCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 349 FYQDEI----CLGGGVIE 362


>gi|302389695|ref|YP_003825516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200323|gb|ADL07893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 364

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 158/376 (42%), Positives = 220/376 (58%), Gaps = 19/376 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCA 69
           + L+KN    RVVVAMSGGVDSS  A LLK+ GY+VIG+T+Q++       + R+G CC+
Sbjct: 1   MSLNKN----RVVVAMSGGVDSSTCAYLLKKQGYEVIGITMQIWQDPSEDYTYREGGCCS 56

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              VYDAR+V + + + +YV +++E F   VI  F   Y  G TP PC+ CNR +KF  L
Sbjct: 57  IGAVYDARKVAEKLGIPYYVLNFKEEFNQKVIEYFIEEYLRGRTPNPCIACNRYIKFEAL 116

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L    ++ A  LATGHY R      D    R ++ + +D  +DQSY L+  TQ QL  L 
Sbjct: 117 LQKAMEVDAYYLATGHYARIEY---DSASGRYLLKKAVDKSKDQSYALYNLTQGQLEHLI 173

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            PLG   K  +RD+A+E GL +A+K DSQ+ICFV    Y + +K   +G    G IV  N
Sbjct: 174 MPLGYFTKSQIRDIAKEAGLPVAEKPDSQEICFVND-DYKEFLKEKASGRIKPGPIVDKN 232

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+ILG+H GI  YTIGQRRGLG++ G+PL+V+ +D+  + V+VG  + L         +N
Sbjct: 233 GRILGQHKGIAFYTIGQRRGLGISAGKPLYVIDIDRKRNAVVVGEEKDLLTKEFTADHVN 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+   + +D      + F KIR + D  P  +   + G V V F++ +  V  GQ+ VFY
Sbjct: 293 WIAFDVLDDK----KRVFAKIRYNFDEKPAQIMPLNSGMVKVVFDEPQKSVTPGQSVVFY 348

Query: 369 TSDSNEARVLGGGIIS 384
             D     VLGGGIIS
Sbjct: 349 DGDV----VLGGGIIS 360


>gi|90415927|ref|ZP_01223860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2207]
 gi|90332301|gb|EAS47498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2207]
          Length = 370

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 190/380 (50%), Gaps = 27/380 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LL   GY V G+ ++ ++    ++    C A  D+ DA++VCD
Sbjct: 6   KVIVGMSGGVDSSVAALLLMEQGYSVEGLFMKNWDEDDETE---YCTAKADLADAQQVCD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  ++   + + V   F   Y AG TP P + CNR +KF   L   + LGAD +
Sbjct: 63  KLGITLHTANFAADYWDNVFEHFLEEYRAGRTPNPDILCNREIKFKVFLDYAQILGADAI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     +  + + +D  +DQSYFL A  Q       FP+G+++K  VR
Sbjct: 123 ATGHYTRLAEVDG-----QTRLLKGLDGNKDQSYFLHAVEQSAFAKSLFPVGELEKPEVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E G   + K DS  ICF+ + ++ D +++     A  G++V   G ++G+H G++ 
Sbjct: 178 RIAEEHGFVTSTKKDSTGICFIGERRFKDFLEQYIP--AQPGEMVTPEGVVIGQHQGLMF 235

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+        EP F +  D  ++R++VG       L   ++    INW+  
Sbjct: 236 YTIGQRQGLGIGGVKNSPDEPWFTLQKDLANNRLVVGQGAQHPLLFTDQLRAEGINWING 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                     F+C  K R  Q      V     G  V F+  +  +  GQ+ VFY +D  
Sbjct: 296 -----TPSSSFRCMAKARYRQPDQECLVTPTATGCEVLFDTPQRAITPGQSVVFYRAD-- 348

Query: 374 EARVLGGGIISGSKRSDAVE 393
               LGGGII  +       
Sbjct: 349 --HCLGGGIIEATWNGQMAA 366


>gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 09V1-c]
          Length = 375

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 198/381 (51%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   TQ+QL    FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVT----DKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  + + +       A+ G IV  +G+I+G+H
Sbjct: 176 KPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGKIVTADGRIVGKH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR GLG+   +    P FVV  +   + +IV      + L    +   E++
Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D  +    C  K R  Q  V V +  N  ++ V+V+F++    V  GQA VF
Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKR 388
           Y  +      LGG II  + R
Sbjct: 351 YDGE----ECLGGAIIDKAYR 367


>gi|160881034|ref|YP_001560002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium phytofermentans ISDg]
 gi|205813731|sp|A9KPI9|MNMA_CLOPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160429700|gb|ABX43263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium phytofermentans ISDg]
          Length = 357

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 143/366 (39%), Positives = 210/366 (57%), Gaps = 15/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78
            +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARR
Sbjct: 2   KKVVVGMSGGVDSSVAAYLLKEAGYDVIGVTMQIWQDEDNQTVEENGGCCGLSAVDDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V +++++ +YV +++  F+  V+  F   Y AG TP PC+ CNR VK+  LL+ + Q+GA
Sbjct: 62  VANSLDIPYYVMNFKSEFKANVMDYFVKEYQAGRTPNPCIACNRYVKWESLLTRSLQIGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R           R  + +     +DQ+Y L+  TQ QL     P+G+  KE
Sbjct: 122 DYIATGHYARIVTLP----NGRFALKKSATAAKDQTYALYNLTQDQLSKTLMPVGEYTKE 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL +A+K DSQ+ICFV    Y   ++       + G+ V   G ILGRH G
Sbjct: 178 EVREIAAKIGLLVANKPDSQEICFVPDNNYAGFIEDYTGQKIIPGNFVDTKGNILGRHQG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YT+GQR+GLG+A+G P FVV +   ++ V++G  + +   R+   ++N +    FED
Sbjct: 238 IIHYTVGQRKGLGIALGRPAFVVEIRPETNEVVIGSNDDIFTDRLIANKLNAMAVEEFED 297

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
               G +   KIR + +     +++ +D  +  +FE  +  V  GQA VFY  D     V
Sbjct: 298 ----GMEVIAKIRYNHEGSKCTIRKVSDTEIACEFETPQRAVTPGQAVVFYQGDI----V 349

Query: 378 LGGGII 383
           +GGG I
Sbjct: 350 VGGGTI 355


>gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121]
 gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121]
          Length = 377

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 208/395 (52%), Gaps = 30/395 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+    T  N++    + K+ +V+V MSGGVDSSV A LL + GY V G+ ++ ++    
Sbjct: 1   MITETNTPENTIH---SIKNTKVIVGMSGGVDSSVSALLLIQQGYQVEGLFMKNWDEDDG 57

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           ++    C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + C
Sbjct: 58  TE---YCTAKDDLADAQSVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILC 114

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+ +KF   L     LGAD +ATGHY+R      DD + +  + + +D  +DQSYFL+A 
Sbjct: 115 NKEIKFKAFLEYANALGADYIATGHYVRRTH---DDNQAK--LLKGLDNNKDQSYFLYAV 169

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
            + ++    FP+G+++K  VR LA+E  L   +K DS  ICF+ + ++ D +++     A
Sbjct: 170 GKDEIAKSLFPVGELEKPEVRRLAQEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--A 227

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV--- 292
             GDI  L G  +GRH+G++ +TIGQR+GLG+        EP +VV  D +++ ++V   
Sbjct: 228 QPGDIKTLEGDTIGRHSGLMYHTIGQRQGLGIGGLANYSDEPWYVVEKDLDNNVLLVTQS 287

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVD 351
              + L    +    ++W+     E  +     C  K R  Q      +  N DG + V 
Sbjct: 288 SDDKPLYKTHLNASNMDWVARVAPELPLT----CKAKCRYRQADQDCTISANPDGSIEVS 343

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           F +++  +  GQ+ VFY  +      LGGGII+ +
Sbjct: 344 FVEAQRAITPGQSVVFYLDE----ECLGGGIINRA 374


>gi|332173678|gb|AEE22932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 377

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 128/391 (32%), Positives = 199/391 (50%), Gaps = 29/391 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            L++ +L  N    +V+V MSGGVDSSV A +L + GY V G+ ++ +      +    C
Sbjct: 6   SLSAAELASN-SQKKVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDE---YC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A +D+ DA+ V D + +  +  ++   + + V   F   Y +G TP P + CN+ +KF 
Sbjct: 62  AAAEDLKDAQAVADKLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFK 121

Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L     +L AD +ATGHY+R R   G        M R MD  +DQSYFL+   +Q + 
Sbjct: 122 AFLEFAAEELEADYIATGHYVRRREVDG-----HWQMLRGMDDNKDQSYFLYTLGEQHVG 176

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FP+GD++K  VR++A+E GL   DK DS  ICF+ + K+ D + +     A  G I 
Sbjct: 177 QTLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIE 234

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298
              GQ +G+H G++ +T+GQR+GL +        +P +VV  D   + +IVG       L
Sbjct: 235 TPEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPRL 294

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV 357
               +   +++W+             KC VK R  Q+ +P  +  + DG   V F++ + 
Sbjct: 295 FSKGLVANQLHWVD----RVGPTCAIKCSVKTRYRQEDIPCSLTLDSDGSARVIFDQPQK 350

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            V  GQ+ VFY ++      LGGGII    R
Sbjct: 351 AVTPGQSAVFYLNEV----CLGGGIIESYIR 377


>gi|119503231|ref|ZP_01625315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2080]
 gi|119460877|gb|EAW41968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2080]
          Length = 363

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 193/378 (51%), Gaps = 26/378 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           NP    V+V MSGGVDSSV A LL+  GY V G+ ++ ++    +     C A +D+ DA
Sbjct: 3   NPSPSTVIVGMSGGVDSSVAALLLRDQGYRVEGLFMKNWDEDDGTD---YCTAKEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V  ++ +  +  ++   + + V   F + Y +G TP P + CNR +KF   L    +L
Sbjct: 60  EAVAASLGIKLHSANFAAEYWDGVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYATEL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY+R      DD   R  + + +D ++DQSYFL     ++L    FP+GD+ 
Sbjct: 120 GADFIATGHYVRR-----DDSGERTALLKGLDPDKDQSYFLHQVGHRELSRSLFPVGDLA 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ + ++ D +++     A  G I   NGQ LG H
Sbjct: 175 KPEVRKIAEQAGLTTARKKDSTGICFIGERRFKDFLQQYLP--AQPGVIEDTNGQALGEH 232

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ +TIGQR+GLG+         P +VV      + +IV        L  H ++   +
Sbjct: 233 QGLMYHTIGQRQGLGIGGLADRNAAPWYVVEKHVERNVLIVAQGNDHPRLYKHSLHASTL 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+     E A     +C  K+R  Q      V +   G  V+F+  +  +  GQ+ VFY
Sbjct: 293 FWIS----EQAPTFPLQCTAKVRYRQPDQSCVVTKTASGFLVEFDVPQRAITPGQSVVFY 348

Query: 369 TSDSNEARVLGGGIISGS 386
            +D+     +GGGII G+
Sbjct: 349 HNDT----CMGGGIIEGA 362


>gi|146311302|ref|YP_001176376.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. 638]
 gi|205816867|sp|A4W9E5|MNMA_ENT38 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145318178|gb|ABP60325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter sp. 638]
          Length = 369

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 196/381 (51%), Gaps = 30/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSASPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+     Q+    FP+
Sbjct: 116 AEDLGADFIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYTLGHDQIVQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A  + L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  
Sbjct: 171 GELEKPEVRKIAENLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDD 228

Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           +G H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V        L    + 
Sbjct: 229 VGEHQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  V   +++ V V F++    V  GQ
Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTVTALDEERVEVRFDEPVSAVTPGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 345 SAVFYSGEI----CLGGGIIE 361


>gi|205822308|sp|A7HV69|MNMA_PARL1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 399

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/367 (59%), Positives = 263/367 (71%), Gaps = 9/367 (2%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSLDL   P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A  RKG+
Sbjct: 2   TGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAVSRKGA 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+ DARRV D I + HYV DYE+RFR AV+  FA SYAAGETP+PCV CN  VKF
Sbjct: 62  CCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERVKF 121

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL   R LGA  LATGHYI SR      G   R + RP D ERDQSYFLFATTQ+QL 
Sbjct: 122 RDLLDTARDLGAAALATGHYIASRR-----GAAGRELHRPRDEERDQSYFLFATTQEQLE 176

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG++ K   R LA  MGL++A K DSQDICFV  G+Y  +V+++  G +  G++V
Sbjct: 177 FLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASAPGEVV 236

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           HL+G++LGRH+GI+N+TIGQRRGLG+       EPLFVV LD    +VIVGPRE+LE  +
Sbjct: 237 HLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREALETQK 296

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           + LR+INWLGDG F +   +G K   K+RS++ PVP  + R  +G  V+  +SE GVA G
Sbjct: 297 LTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEGGVAPG 356

Query: 363 QACVFYT 369
           QACVFY 
Sbjct: 357 QACVFYD 363


>gi|153814505|ref|ZP_01967173.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756]
 gi|317500546|ref|ZP_07958768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089354|ref|ZP_08338254.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847999|gb|EDK24917.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756]
 gi|316898056|gb|EFV20105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405417|gb|EGG84952.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 356

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 149/366 (40%), Positives = 210/366 (57%), Gaps = 15/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78
            +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARR
Sbjct: 2   KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEDVCTVEENGGCCGLSAVEDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + +YV ++ E F+  VI  FA SY  G+TP PC+ CNR VK+  LL  +  +GA
Sbjct: 62  VAAALGIPYYVMNFREEFQKNVIDYFADSYVNGQTPNPCIACNRYVKWEALLKRSISIGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R           R  + R     +DQ+Y L+  TQ+QL     P+G+  KE
Sbjct: 122 DFIATGHYARVEQLS----NGRYALRRSATAAKDQTYALYNLTQEQLKRTLMPVGEYTKE 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL +ADK DSQDICFVQ G Y   ++      A EG+ V  +G ++GRH G
Sbjct: 178 EVRVIAEKIGLLVADKPDSQDICFVQDGNYAAFIEEHTGKKASEGNFVTSDGTVIGRHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YT+GQR+GLG+A+G P FV+ +   ++ V++G  E      +  +++N++      +
Sbjct: 238 IIHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTTVVRAKQLNFMSV----E 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  + F KIR +       V+R  +D V   FE+ +  V  GQA VFY  +     V
Sbjct: 294 DLKEPLRVFAKIRYNHKGAWCTVERTKEDEVTCCFEEPQRAVTPGQAIVFYDGE----YV 349

Query: 378 LGGGII 383
           LGGG I
Sbjct: 350 LGGGTI 355


>gi|83719254|ref|YP_441804.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis
           E264]
 gi|257137971|ref|ZP_05586233.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis
           E264]
 gi|123537507|sp|Q2SZ45|MNMA_BURTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83653079|gb|ABC37142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis E264]
          Length = 386

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 185/400 (46%), Gaps = 35/400 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDVIG+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-------RNDDGVYVDFEKSEVGVASGQA 364
                 +   DG +C  K R  Q   P              +   + F++ +  V  GQ+
Sbjct: 293 AG----EPPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQS 348

Query: 365 CVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402
            V Y  D      LGGGII    + R DA   S  S + +
Sbjct: 349 AVLYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384


>gi|13472503|ref|NP_104070.1| tRNA-specific 2-thiouridylase MnmA [Mesorhizobium loti MAFF303099]
 gi|14023249|dbj|BAB49856.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Mesorhizobium loti MAFF303099]
          Length = 378

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/377 (58%), Positives = 272/377 (72%), Gaps = 5/377 (1%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R GSCCAGQD+ DARRV +T+ + 
Sbjct: 1   MSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCCAGQDIDDARRVSETLGIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+DLL+  ++LGAD LATGHY
Sbjct: 61  HYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           IRS    G +G   R + RP+D +RDQSYFLFATTQ Q+  LRFPLG + K  VR +A E
Sbjct: 121 IRS----GANG-AHRALYRPVDADRDQSYFLFATTQAQIDYLRFPLGGLSKPQVRAIAEE 175

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           MGL +A K DSQDICFV QGKY D++ ++    A  GDIVH++G++LGRH GI+ YTIGQ
Sbjct: 176 MGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHIDGRVLGRHEGILRYTIGQ 235

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           RRG+G+A GEPL+VV+LD   +RV+VGPRE+LE H+IYLR +NWLGDG   D    G + 
Sbjct: 236 RRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNMNWLGDGPLGDIPEGGLEL 295

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           F K+RS++ P P  ++       V+    E G+A GQACV Y+ D NEARV GGG I  S
Sbjct: 296 FAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLYSDDGNEARVFGGGFIERS 355

Query: 387 KRSDAVEESLLSVIGDE 403
           +R    E  L  +    
Sbjct: 356 ERGAEAEAMLTKLAARP 372


>gi|115523063|ref|YP_779974.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisA53]
 gi|115517010|gb|ABJ04994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisA53]
          Length = 419

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/391 (54%), Positives = 279/391 (71%), Gaps = 4/391 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
               LNSLDL+  P+D RVVVAMSGGVDSS  AALLK +GYDV+G+TLQLY+  +A  RK
Sbjct: 17  TGAMLNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRK 76

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V + I + HYV DYE RFR +VI  FA+SYA GETP+PC++CNR++
Sbjct: 77  GACCAGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSI 136

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLLS  R+LGA VLATGHY+ SR          R +    D +RDQSYFLFATT++Q
Sbjct: 137 KFRDLLSTARELGAAVLATGHYVSSRRLPD----GSRALVCAADADRDQSYFLFATTREQ 192

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y DVV R+       GD
Sbjct: 193 LDFLRFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGD 252

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV L+G++LG+H+GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPR +L + RI 
Sbjct: 253 IVDLDGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRIL 312

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           LR++NW+GD   + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQA
Sbjct: 313 LRDVNWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQA 372

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
           CVFY +   +ARVLGGG I  +    A +++
Sbjct: 373 CVFYDAPEGQARVLGGGFIKSAAPRAANKDA 403


>gi|240140914|ref|YP_002965394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|254563424|ref|YP_003070519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens DM4]
 gi|240010891|gb|ACS42117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|254270702|emb|CAX26706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 410

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 209/382 (54%), Positives = 272/382 (71%), Gaps = 8/382 (2%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           + +  +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R
Sbjct: 21  APSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHR 80

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           KG+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+
Sbjct: 81  KGACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRS 140

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL + R+LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +
Sbjct: 141 VKFRDLLGLARELGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPE 196

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL  LRFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G
Sbjct: 197 QLAYLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPG 256

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV L+G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI
Sbjct: 257 EIVDLDGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRI 316

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVAS 361
            L ++NWLGDG  ED V       V++RS+++P P  +  N  +    V+    E GV+ 
Sbjct: 317 RLTDLNWLGDGAPEDIVERP--VAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSP 374

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACV Y  D   A+VLGGG I
Sbjct: 375 GQACVIYADDDPRAQVLGGGTI 396


>gi|167618733|ref|ZP_02387364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis Bt4]
          Length = 386

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 185/400 (46%), Gaps = 35/400 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDVIG+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-------RNDDGVYVDFEKSEVGVASGQA 364
                 +   DG +C  K R  Q   P              +   + F++ +  V  GQ+
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQS 348

Query: 365 CVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402
            V Y  D      LGGGII    + R DA   S  S + +
Sbjct: 349 AVLYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384


>gi|33151616|ref|NP_872969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus ducreyi 35000HP]
 gi|71153355|sp|Q7U342|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus ducreyi 35000HP]
          Length = 384

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 201/379 (53%), Gaps = 28/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K+ +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA
Sbjct: 21  DNKNKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADA 77

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 78  QNVADRLGIKLHKINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEYAAED 137

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R      +       + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 138 LGADYIATGHYVRRSADNEN-----AQLLRGLDANKDQSYFLYTLSNQQVAKSLFPVGEI 192

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++GL  A K DS  ICF+ + K+ + + R     A  GDI  + G+I+GR
Sbjct: 193 EKPMVRQIATDLGLVTAKKKDSTGICFIGERKFKEFLARFLP--AQPGDISTVEGEIVGR 250

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLRE 307
           H+G++ YT+GQR+GLG+        +P +VV  D  ++ +IV        L    +   +
Sbjct: 251 HDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLVNNVLIVAQGHDNSALLSTGLIANQ 310

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+        + D  +C VK R  Q  +   V+  D + + V F++ ++ V  GQ+ V
Sbjct: 311 LHWVD----RKTIGDTLRCTVKTRYRQTDIACLVEPIDAENIRVIFDEPQIAVTPGQSAV 366

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  +      LGGG+I  
Sbjct: 367 FYQGEV----CLGGGVIEA 381


>gi|170743223|ref|YP_001771878.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium sp. 4-46]
 gi|205816883|sp|B0UIW7|MNMA_METS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168197497|gb|ACA19444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium sp. 4-46]
          Length = 382

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/388 (55%), Positives = 272/388 (70%), Gaps = 11/388 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P+D RVVVAMSGGVDSSVVA LL+R GYDV+G+TLQLY+   A+ R+G+CC
Sbjct: 1   MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLRRQGYDVVGITLQLYDHGAATHRRGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DARR  +T+ + HYV DYE+RFR AVI  FA SY  GETP+PCV+CNR++KF D
Sbjct: 61  AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFAESYIHGETPIPCVECNRSIKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+    LGAD LATGHY+ SR   G      R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLATALDLGADALATGHYVASRARPG----GGRALYRALDPARDQSYFLYATTPEQLDVL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG++ K+  R LARE GL +ADK DSQDICFV QG+Y DV+ R+    A  G+IVHL
Sbjct: 177 RFPLGELPKDETRRLAREFGLAVADKPDSQDICFVPQGRYQDVIARLRPDAARPGEIVHL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH GII +T+GQRRGLG+A GEPL+VV LD  ++RV+VGPRE+L    I + E 
Sbjct: 237 DGRTLGRHEGIIGFTVGQRRGLGLATGEPLYVVRLDPETARVVVGPREALATSVIRIAET 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACV 366
           NWLGD    D  +DG    V++RS+++P P  ++ N       V  E  E GV+ GQAC 
Sbjct: 297 NWLGDEPLAD--LDGMPVAVRVRSTREPRPAALRWNRALACAEVVLETPEDGVSPGQACA 354

Query: 367 FYTSDSNEARVLGGGII---SGSKRSDA 391
            Y  D   ARVLGGG I     ++R  A
Sbjct: 355 IYADDGPRARVLGGGTIQKVEAARREAA 382


>gi|254478804|ref|ZP_05092171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035259|gb|EEB75966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydibrachium pacificum DSM 12653]
          Length = 376

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 145/384 (37%), Positives = 217/384 (56%), Gaps = 17/384 (4%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KG 65
           RL +L + KN    RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +       +G
Sbjct: 7   RLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +K
Sbjct: 64  GCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL
Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FPLG  KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+ 
Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
               G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +  
Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELIS 300

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
              N++      D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+
Sbjct: 301 YNNNFISI----DKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQS 356

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            VFY  D     V+GGGII    R
Sbjct: 357 VVFYDGDI----VVGGGIIERKVR 376


>gi|269120194|ref|YP_003308371.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
 gi|268614072|gb|ACZ08440.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
          Length = 359

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 193/374 (51%), Gaps = 29/374 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+ MSGGVDSSV A LLK  GY+VIGV ++ ++    +   G C A +D  D   V
Sbjct: 2   KKRVVLGMSGGVDSSVAAILLKEQGYEVIGVFMKNWDE---TDENGVCPADEDYKDVIAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + ++V +Y  ++ + + + V   F   Y AG TP P V CN+ +KF   L    ++GAD
Sbjct: 59  AEQLDVPYYSVNFVKEYWDRVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLDYAVKIGAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D GK R  + R +D  +DQ+YFL   +Q+QL  + FP+G+  K+ 
Sbjct: 119 YIATGHYARIER---DSGKVR--LLRGLDDNKDQTYFLCQLSQEQLDKVIFPIGEYNKKD 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A +  L  A K DS  ICF+ +  + + + R     A  G IV  +G+ LG H G+
Sbjct: 174 IRAIAEKYNLKTAKKKDSTGICFIGERDFAEFLNRYLP--AKPGKIVTADGENLGNHVGL 231

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311
           ++YTIGQR+G+G+       GEP FV   D   + +IV   G  E L    +     N++
Sbjct: 232 MHYTIGQRKGIGIGNTKDGSGEPWFVADKDLEKNELIVVQGGDHEKLYSKALIADNFNFI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                        KC  K R  Q  V V V++   D   V F+K E  V  GQ  V Y +
Sbjct: 292 NKREL------PLKCTAKFRYRQKDVGVTVEKAGTDSYRVTFDKPEKAVTLGQIVVLYDN 345

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 346 E----ECLGGGIIK 355


>gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 375

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK   YDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHIRVVVGMSGGVDSSVSALLLKEQRYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ + N V   F S Y  G TP P + CN+ +KF   L    +L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   TQ+QL    FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVT----DENGIVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL  A K DS  ICF+ +  + + +       A+ G+IV  +G+I+G+H
Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR GLG+   +    P FVV  +   + +IV      E L    +   E++
Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D  +    C  K R  Q  V V V   ++++ V+V+F++    V  GQA VF
Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKR 388
           Y  +      LGG II  + R
Sbjct: 351 YDGE----ECLGGAIIDKAYR 367


>gi|259046678|ref|ZP_05737079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella adiacens ATCC 49175]
 gi|259036843|gb|EEW38098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella adiacens ATCC 49175]
          Length = 374

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 188/378 (49%), Gaps = 27/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + + +RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   SNEKIRVVVGMSGGVDSSVTALLLKEAGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    QL
Sbjct: 59  AAVAEQIGIPYYSVNFEKEYWDRVFEYFLREYRLGRTPNPDVMCNKEVKFQAFLDYALQL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +A GHY R    V  D      + R  D  +DQ+YFL    Q+QL    FP+G ++
Sbjct: 119 GADYVAMGHYAR----VEKDENGIVHLLRGKDNNKDQTYFLSQLNQKQLEKAMFPIGHLE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A +  L  A K DS  +CF+ +  + + +       A  G +V L+G++ G H
Sbjct: 175 KKEVREIAEKYDLATAKKKDSTGVCFIGERNFNEFLSNYLP--AKPGKMVTLDGEVKGDH 232

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTI    G   G G    +P FV+  D +++ + VG      +L    +   +I 
Sbjct: 233 AGLMYYTIGQRQGLGIGGGGKTNDPWFVIGKDLSTNTLYVGQGFHHPNLYSDSLTATDIQ 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACV 366
           +  D   E      F+C  K R  Q    V V   +++     V F++    +  GQA V
Sbjct: 293 FTNDLPRE----KTFECTAKFRYRQQDTKVKVVLDEKDPTRATVIFDEPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYNGE----ECLGGGIID 362


>gi|205821605|sp|Q07SU0|MNMA_RHOP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 400

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/387 (54%), Positives = 279/387 (72%), Gaps = 4/387 (1%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LNSLDL+  P+D RVVVAMSGGVDSS  AALLK +GYDV+G+TLQLY+  +A  RKG+CC
Sbjct: 2   LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRKGACC 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD++DAR V + I + HYV DYE RFR +VI  FA+SYA GETP+PC++CNR++KF D
Sbjct: 62  AGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRD 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LLS  R+LGA VLATGHY+ SR          R +    D +RDQSYFLFATT++QL  L
Sbjct: 122 LLSTARELGAAVLATGHYVSSRRLPD----GSRALVCAADADRDQSYFLFATTREQLDFL 177

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLGDM K   R+LAR  GL +ADK DSQDICFV  G+Y DVV R+       GDIV L
Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGDIVDL 237

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG+H+GI+++T+GQRRGLG+A   PL+V+ L+ ++ RV+VGPR +L + RI LR++
Sbjct: 238 DGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRILLRDV 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           NW+GD   + AV DG + FV++RS++ P P +++  D    V+    E GV+ GQACVFY
Sbjct: 298 NWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQACVFY 357

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEES 395
            +   +ARVLGGG I  +    A +++
Sbjct: 358 DAPEGQARVLGGGFIKSAAPRAANKDA 384


>gi|307728482|ref|YP_003905706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1003]
 gi|307583017|gb|ADN56415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1003]
          Length = 385

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 125/396 (31%), Positives = 184/396 (46%), Gaps = 33/396 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLFVAQGHDHPWLLSHTLTAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-------NDDGVYVDFEKSEVGVASGQ 363
           +      +   +GF C  K R  Q       +         +D   + F++++  V  GQ
Sbjct: 292 VAG----EPPPEGFACGAKTRYRQADARCTFRSASGATTNGEDLFELTFDEAQWAVTPGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
           + V Y  D      LGGGII  +  +     +    
Sbjct: 348 SAVLYDGDV----CLGGGIIEHAATAQPAARTPQKA 379


>gi|307265916|ref|ZP_07547465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919085|gb|EFN49310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 376

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 17/390 (4%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           ++    RL +L + KN    RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +   
Sbjct: 1   MIESTRRLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEE 57

Query: 62  KR--KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               +G CC+   V DARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ 
Sbjct: 58  AVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIA 117

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CN+ +KF +LL     + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+ 
Sbjct: 118 CNKYIKFEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYN 174

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            TQ QL  + FPLG  KK+ VR LA+ +GL +A K DSQ+ICFV    Y   ++      
Sbjct: 175 LTQTQLEHILFPLGKYKKDEVRKLAQNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEE 234

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
              G+     G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + + 
Sbjct: 235 IKPGEFRDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVF 294

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358
              +     N++      D +    +   KIR +       ++  +DG V+V F+  +  
Sbjct: 295 GDELISYNNNFISI----DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRA 350

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSKR 388
           +  GQ+ VFY  D     V+GGG I    R
Sbjct: 351 ITPGQSVVFYDGDI----VVGGGTIERKVR 376


>gi|85712895|ref|ZP_01043936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina baltica OS145]
 gi|85693275|gb|EAQ31232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina baltica OS145]
          Length = 376

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KNP + +V+V MSGGVDSSV A LL + GY V G+ ++ +      +    C A  D+ D
Sbjct: 6   KNPSETKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDDDE---YCAAADDLAD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  VC+ + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L    +
Sbjct: 63  AEAVCEKLGIELHTVNFAAEYWDNVFEHFLDEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 122

Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY+R     G     +  + R +D  +DQSYFL+  + + +    FP+G+
Sbjct: 123 ALGADYIATGHYVRRAFNDG-----KWQLLRGLDNNKDQSYFLYTLSHEHVAQTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL  ADK DS  ICF+ + K+ D +++     A  G I  ++G+ LG
Sbjct: 178 LEKPEVRRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AQPGKIESVDGEELG 235

Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H G++ +TIGQR+GL +        +P +VV  D   + ++V        L    +   
Sbjct: 236 DHEGLMYHTIGQRKGLHIGGLADAGDDPWYVVDKDVERNVLVVAQGKNHPRLFSKGLIAN 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           +++W+      + + +  +C VK R  Q  +   +    DG + V F++    V  GQ+ 
Sbjct: 296 QLHWVN----REEITEPLRCVVKTRYRQADIACQITPAADGRITVSFDEPVAAVTPGQSA 351

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  D      LGGGII 
Sbjct: 352 VFYIDDV----CLGGGIIE 366


>gi|91793184|ref|YP_562835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella denitrificans OS217]
 gi|91715186|gb|ABE55112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella denitrificans OS217]
          Length = 377

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 200/398 (50%), Gaps = 32/398 (8%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV+   T +  +         +V+V MSGGVDSSV A LL + GY+V G+ ++ +     
Sbjct: 1   MVLGSMTSIKPIH-----NGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDT 55

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + C
Sbjct: 56  DE---YCAAADDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMC 112

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N+ +KF   L      L AD +A GHY+R R    D+      M R +D  +DQSYFL+ 
Sbjct: 113 NKEIKFKAFLEFADDILDADYIAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYT 168

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + +Q+    FP+G+++K  VRD+A++MGL   DK DS  ICF+ + K+ D +       
Sbjct: 169 LSHEQVARSLFPVGELEKHEVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP-- 226

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV-- 292
           A  GDI    G+++G+H G++ +T+GQR+GLG+        +P +VV  D   + +IV  
Sbjct: 227 AQPGDIETPEGEVIGKHQGLMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQ 286

Query: 293 -GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350
            G    L    + + +++W+             +  VK R  Q  VP  +  +D   + V
Sbjct: 287 GGNHPRLMSQGMTVNQLHWVD----RKGPATDSQLVVKTRYRQTDVPCRISFDDPQRITV 342

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            F+     V  GQ+ VFY  D      LGGGII    R
Sbjct: 343 IFDSPVAAVTPGQSAVFYDGDV----CLGGGIIDSLIR 376


>gi|53804157|ref|YP_114223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylococcus capsulatus str. Bath]
 gi|81681831|sp|Q607H5|MNMA_METCA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53757918|gb|AAU92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylococcus capsulatus str. Bath]
          Length = 371

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 192/386 (49%), Gaps = 25/386 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              VVV MSGGVDSSV A LL R GY V G+ ++ +     ++    C A QD  DA++V
Sbjct: 2   KPHVVVGMSGGVDSSVTALLLLRQGYRVSGLFMKNWEEDDGTE---YCTAAQDFADAKQV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + V  +  ++   + + V   F S Y AG TP P + CN+ +KF   L     LGAD
Sbjct: 59  CERLGVELHTVNFAAEYWDEVFEVFLSEYRAGRTPNPDILCNKQIKFRAFLDYAEDLGAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++A GHY R       + + R  + +  D  +DQSYFL+   Q+QL    FPLG ++K  
Sbjct: 119 LIAMGHYARVA-----EEEGRLQLLKGCDPGKDQSYFLYTLQQEQLARTLFPLGGLRKTE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA   G     K DS  ICF+ + ++ D + R     A  GDI    G +LGRH+G+
Sbjct: 174 VRALAAGAGFANDAKKDSTGICFIGERRFKDFLARYLP--ARPGDIRTPEGVLLGRHDGL 231

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YT+GQR GLG+        EP +V+  D   + ++VG       L    +    ++W+
Sbjct: 232 MYYTLGQRSGLGIGGTRAGGQEPWYVLDKDLARNVLVVGQGHDHPLLYRDGLLASRLHWV 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
                  A  +  +C  K R  Q      ++   +D + V F + +  V  GQ+ VFY  
Sbjct: 292 DGAGP--APGEILRCAAKTRYRQSDQDCRIRLIGEDRLEVVFAQPQRAVTPGQSVVFYQD 349

Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396
           D      LGGG+I  +  +D+  ++ 
Sbjct: 350 DC----CLGGGVIDLTFNADSRADAA 371


>gi|291550046|emb|CBL26308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus torques L2-14]
          Length = 358

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 208/368 (56%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
              +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    +  G CC    V DA
Sbjct: 2   SKGKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENEVQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV  +I + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVASSIGIPYYVMNFKQEFQKNVIDYFTKEYLNGRTPNPCIACNRYVKWEALLQRSLSI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + R   L +DQ+Y L+  TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARIDKLS----NGRYAIRRSATLAKDQTYALYNLTQEQLEHTLMPVGNYS 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R++A ++GL +A+K DSQDICFV  G Y   ++        +G+ V  +G+ILG+H
Sbjct: 178 KDQIREMAEKIGLQVANKPDSQDICFVPDGDYASFIEENADTPIRQGNFVTPDGKILGKH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YT+GQR+GLG+A+G P FV+ +   +  V++G  E    H +   E+N++     
Sbjct: 238 KGIIHYTVGQRKGLGLALGYPAFVLEIRPETDEVVIGTYEESLTHTLRANELNFMSV--- 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            + + +  + F KIR +       V++  +D +   F++    V  GQA V Y  +    
Sbjct: 295 -EDLTEPMRVFAKIRYNHKGAWCTVEKTGEDEITCTFDEPIRAVTPGQAVVLYDGE---- 349

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 350 YVLGGGTI 357


>gi|163853494|ref|YP_001641537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|163665099|gb|ABY32466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens PA1]
          Length = 410

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/382 (54%), Positives = 270/382 (70%), Gaps = 8/382 (2%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           + +  +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R
Sbjct: 21  APSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHR 80

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           KG+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+
Sbjct: 81  KGACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRS 140

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL + R LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +
Sbjct: 141 VKFRDLLGLARDLGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPE 196

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL  LRFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G
Sbjct: 197 QLAYLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPG 256

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV L+G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI
Sbjct: 257 EIVDLDGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRI 316

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVAS 361
            L ++NWLGDG  ED         V++RS+++P P  +  N  +    V+    E GV+ 
Sbjct: 317 RLTDLNWLGDGAPEDIAERP--VAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSP 374

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACV Y  D   A+VLGGG I
Sbjct: 375 GQACVIYADDDPRAQVLGGGTI 396


>gi|16272139|ref|NP_438342.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae Rd KW20]
 gi|260580945|ref|ZP_05848769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae RdAW]
 gi|1074294|pir||D64144 probable ATPase HI0174 - Haemophilus influenzae (strain Rd KW20)
 gi|1573129|gb|AAC21843.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092434|gb|EEW76373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae RdAW]
          Length = 418

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 47  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 217

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 218 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 276 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 336 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 392 SAVTPGQSAVFYLGEV----CLGGGIIA 415


>gi|304397251|ref|ZP_07379130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. aB]
 gi|304355400|gb|EFM19768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. aB]
          Length = 370

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 120 LGADFIATGHYVRRH-----DVDGQSQLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G+I    GQI+G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGE 232

Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        +P +VV  D   +R+IV   G    L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        +    +C VK R  Q  +P   +   DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D      LGGGII 
Sbjct: 349 FYLGDV----CLGGGIIE 362


>gi|301168825|emb|CBW28416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 10810]
          Length = 418

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 202/374 (54%), Gaps = 28/374 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ VC
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVC 116

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 117 DKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGAD 176

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 177 YIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPI 231

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G+
Sbjct: 232 VRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGL 289

Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        E  +VV  D  ++ +IV        L    +   +++W+
Sbjct: 290 MYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWV 349

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTS 370
                 + + +  +C VK R  Q  +P  ++  DD  + V F++ +  V  GQ+ VFY  
Sbjct: 350 D----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLG 405

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII+
Sbjct: 406 EV----CLGGGIIA 415


>gi|168218238|ref|ZP_02643863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens NCTC 8239]
 gi|182379744|gb|EDT77223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens NCTC 8239]
          Length = 359

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARR
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GA
Sbjct: 63  VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+
Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H G
Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D
Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V
Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENGKVKVSFEDKQRAITKGQSVVFYKDD----LV 349

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 350 VGGGIIES 357


>gi|331085021|ref|ZP_08334108.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408721|gb|EGG88186.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 357

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +G
Sbjct: 62  RVAAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +     L +DQ+Y L+  TQ+QL     P+G+  K
Sbjct: 122 ADYIATGHYARVVQL----ENGRYTLKCSATLAKDQTYALYNLTQEQLKRTLMPVGEYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR++A ++ L IA+K DSQDICFV  G Y   ++   A    EG+ V L+G++LGRH 
Sbjct: 178 DQVREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YT+GQR+GLG+++G P FV+ +   ++ +++G  E    + +   ++N++      
Sbjct: 238 GITHYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSMSYTLRANQLNFMSI---- 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    + + KIR +       ++++  D V   FE+ +  +  GQA VFY  +     
Sbjct: 294 EDLTGEMRVWTKIRYNHKGAWCTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGE----Y 349

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 350 VVGGGTI 356


>gi|260583885|ref|ZP_05851633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella elegans ATCC 700633]
 gi|260158511|gb|EEW93579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella elegans ATCC 700633]
          Length = 374

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 192/381 (50%), Gaps = 27/381 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +++RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 2   NKENIRVIVGMSGGVDSSVTALLLKQAGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    QL
Sbjct: 59  AAVAEQIGIPYYSVNFEKEYWDRVFEYFLKEYRLGRTPNPDVMCNKEVKFQAFLEYALQL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +A GHY R    V  D      + R +D  +DQ+YFL    QQQL    FP+G ++
Sbjct: 119 GADYVAMGHYAR----VEKDENGVVRLLRGVDNNKDQTYFLSQLNQQQLSKAMFPIGHLE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR +A E  L  A K DS  +CF+ +  + + +       A  G +V L+G++ G H
Sbjct: 175 KKEVRKIAEEFDLATAKKKDSTGVCFIGERNFNEFLSHYLP--AKPGKMVTLDGEVKGDH 232

Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
            G++ YTI    G   G G    +P FVV  D +++ + VG      +L    ++  ++ 
Sbjct: 233 AGLMYYTIGQRQGLGIGGGGKTNDPWFVVGKDLSTNTLYVGQGFHHPNLYSDSLFATDLQ 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACV 366
           +  D    +   + F+C  K R  Q    V V   +D      V FE+    +  GQA V
Sbjct: 293 FNTD----EEKPNEFECTAKFRYRQQDTKVRVVFQEDDKTKAMVYFEEPVRAITPGQAVV 348

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY  D      LGGGII  + 
Sbjct: 349 FYDGDI----CLGGGIIDKAY 365


>gi|164688541|ref|ZP_02212569.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM
           16795]
 gi|164602954|gb|EDQ96419.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM
           16795]
          Length = 362

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 15/371 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDA 76
             +V++ MSGGVDSSV A LLK  GYDVIGVT++L+   +     +  G CC+ + V DA
Sbjct: 2   KKKVMIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLWQDDEEYELIENDGGCCSLEAVEDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V   +++  YV +++E F+  VI  F   Y  G TP PC+ CN+ +KF DL    RQ+
Sbjct: 62  RSVAQKLDIPFYVLNFKEVFKEKVIDYFIDEYINGRTPNPCIACNKYIKFEDLYRRARQI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R      D+   R ++ + +  ++DQ+Y L+  TQ QL     P+GD +
Sbjct: 122 GCDYVATGHYARIE---KDEETGRYLLTKSVTDKKDQTYALYNMTQDQLEHTLLPIGDFE 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE VR++A+E+GL + +K DSQ+ICFV+   Y + VKR +     EG+ V   G +LGRH
Sbjct: 179 KEKVREMAKELGLVVHNKPDSQEICFVKDNDYANYVKRHSNASIKEGNFVDTKGNVLGRH 238

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI+NYTIGQR+GLG+A G+P+FV+ ++  ++ VI+G  + L  H +  +++N++     
Sbjct: 239 KGIVNYTIGQRKGLGIAFGKPMFVIDINAKNNTVILGDNKDLFQHNLIAKDVNFISI--- 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            + + +  +   K+R +  P    V +   D + + F++++  +  GQ+ V Y  D    
Sbjct: 296 -EDIKEPIRVKAKVRYAAKPADATVYKVGQDKIKIVFDEAQRAITKGQSVVMYDGD---- 350

Query: 376 RVLGGGIISGS 386
           +V+GGGII  S
Sbjct: 351 KVVGGGIIESS 361


>gi|110801338|ref|YP_696468.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens ATCC
           13124]
 gi|168211408|ref|ZP_02637033.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626]
 gi|24638315|sp|Q8XJH3|MNMA_CLOPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123049729|sp|Q0TPH2|MNMA_CLOP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110675985|gb|ABG84972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens ATCC 13124]
 gi|170710614|gb|EDT22796.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626]
          Length = 359

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARR
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GA
Sbjct: 63  VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+
Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H G
Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D
Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V
Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 350 VGGGIIES 357


>gi|81428407|ref|YP_395407.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564381|sp|Q38XI3|MNMA_LACSS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78610049|emb|CAI55098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 379

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 134/392 (34%), Positives = 191/392 (48%), Gaps = 27/392 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G C A +D  D  +
Sbjct: 5   SNTRVVVGMSGGVDSSVTALLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYEDVAK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    +L A
Sbjct: 62  VASKIGIPYYSVNFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEVKFKAFLDYAMELDA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY +    +  D      M R  D  +DQ+YFL A +Q QL    FP+G M+K 
Sbjct: 122 DFIAMGHYAQ----IERDENGIAHMLRGGDSNKDQTYFLSALSQDQLQKSMFPIGHMQKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA E GL  A K DS  ICF+ +  +   +       A  G ++ ++G   G H+G
Sbjct: 178 EVRRLAEEAGLATAKKKDSTGICFIGERNFKQFLGEYLP--AQPGKMMTVDGLEKGTHDG 235

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           ++ YTIGQR GLG+       +P FVV  D   + + VG     E L   ++   ++ W+
Sbjct: 236 LMYYTIGQRSGLGIGGGGESNDPWFVVGKDLEQNILYVGQGYHNELLYADQLDASKMTWI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTS 370
                       F C  K R  Q  V + V    +    V F+     +  GQA VFY  
Sbjct: 296 TPVDH----GTDFHCTAKFRYRQQDVGITVHMTSETTATVVFDAPVRAITPGQAVVFYDG 351

Query: 371 DSNEARVLGGGIISGSKR--SDAVEESLLSVI 400
               A  LGGG I  + +  +D  ++ +L  +
Sbjct: 352 ----AECLGGGTIDVAYKVATDDADKQVLQYV 379


>gi|167580628|ref|ZP_02373502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis TXDOH]
          Length = 386

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 131/400 (32%), Positives = 185/400 (46%), Gaps = 35/400 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-------RNDDGVYVDFEKSEVGVASGQA 364
                 +   DG +C  K R  Q   P              +   + F++ +  V  GQ+
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQS 348

Query: 365 CVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402
            V Y  D      LGGGII    + R DA   S  S + +
Sbjct: 349 AVLYDGDV----CLGGGIIEAAATGRPDAAPASRESTLAE 384


>gi|88798697|ref|ZP_01114280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Reinekea sp. MED297]
 gi|88778460|gb|EAR09652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Reinekea sp. MED297]
          Length = 364

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 191/380 (50%), Gaps = 26/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + +V+V MSGGVDSSV AALL   GY V G+ ++ ++    ++    C A +D+ DA
Sbjct: 3   SNSETKVIVGMSGGVDSSVTAALLLEQGYQVEGLFMKNWDEDDGTE---YCTAKEDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + V D + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     L
Sbjct: 60  QAVADRLGIHLHKANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYALTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R+      +GK R  + R  D  +DQ+YFL A   +Q     FP+G+++
Sbjct: 120 GADKIATGHYARTDTM---NGKGR--LLRGNDHNKDQTYFLHAVGHEQFEKTLFPVGELE 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G IV L G++LG H
Sbjct: 175 KPQVRAIAEKYKLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGKIVTLEGEVLGDH 232

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+        P FV   +  ++ ++V       +L    + L  I 
Sbjct: 233 QGLMYYTIGQRQGLGIGGTRHGEAPWFVAQKNLATNELVVVQGTDHPALFTTYMSLNNIY 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+ D   E  V        K R  Q      + RN  G   V F + +  +  GQ+ VFY
Sbjct: 293 WVDDTGPELPVT----LACKHRYRQPDQSCELSRNAQGEYQVTFHEPQRAITPGQSAVFY 348

Query: 369 TSDSNEARVLGGGIISGSKR 388
             D      LGGG+I  +  
Sbjct: 349 LGDV----CLGGGVIETTWN 364


>gi|269123624|ref|YP_003306201.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptobacillus moniliformis DSM 12112]
 gi|268314950|gb|ACZ01324.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptobacillus moniliformis DSM 12112]
          Length = 359

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 198/373 (53%), Gaps = 27/373 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+ MSGGVDSSV A LLK  GY+VIGV ++ +  +  +   G C +  D  D   V
Sbjct: 2   KKRVVLGMSGGVDSSVAAILLKEAGYEVIGVFMKNWEEKDEN---GVCMSDIDYEDVISV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + +Y  ++ + + + V   F S Y    TP P V CN+ +KF   L    +LGAD
Sbjct: 59  AEQLEIPYYSVNFVKEYWDRVFEYFLSEYRLARTPNPDVMCNKEIKFKAFLDYANKLGAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R    +  + K  +++ R +D  +DQSYFL    Q+QL  + FP+G+ +K  
Sbjct: 119 YIATGHYAR----LTTNEKGEKVLLRGVDNNKDQSYFLCGLNQKQLEKVLFPIGEYEKTE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A +  L  A K DS  ICF+ +  + + + +     A +G+IV +NG ILG H+G+
Sbjct: 175 IRKIAEKYNLKTAKKKDSTGICFIGERNFNEFLSKYLP--AKDGNIVDINGNILGSHHGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES--LEVHRIYLREINWLG 312
           + YTIGQR+G+G+       GEP FVV  +   + +IV   +   L    +   + N++ 
Sbjct: 233 MYYTIGQRKGIGLGNTKEGTGEPYFVVDKNVEKNELIVAQGDDNLLYSKGLIANKFNFIN 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +      +   F+C VK R  Q+ V   + +  +D   + F++ +  V  GQ  V Y  +
Sbjct: 293 E------IELPFRCTVKFRYRQNDVSAVIDKIEEDRYQIIFDEKQRAVTLGQIVVLYDGE 346

Query: 372 SNEARVLGGGIIS 384
               + LGGGII 
Sbjct: 347 ----KCLGGGIID 355


>gi|309972705|gb|ADO95906.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Haemophilus influenzae R2846]
          Length = 413

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 42  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 97

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 98  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 157

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 158 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDTNKDQSYFLYTLSHKQV 212

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 213 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 270

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             +N +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 271 RTVNDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 330

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 331 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 386

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 387 SAVTPGQSAVFYLGEV----CLGGGIIA 410


>gi|23012016|ref|ZP_00052207.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 403

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 206/380 (54%), Positives = 270/380 (71%), Gaps = 8/380 (2%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           +  +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG
Sbjct: 16  SPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKG 75

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +CCAG+D++DAR V +T+ + HYV DYE++FR +VI  FA SY +GETP+PCV+CNR+VK
Sbjct: 76  ACCAGRDIHDARAVAETLGIPHYVLDYEDKFRESVIDRFAESYLSGETPIPCVECNRSVK 135

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F DLL++ R LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +QL
Sbjct: 136 FRDLLALARDLGAEALATGHYVASRPLA----EGGRGLFRALDPARDQSYFLYATTPEQL 191

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++    A  G I
Sbjct: 192 AFLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGAI 251

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V L+G+ LG H GII+YT+GQRRGL +++GEPL+VV L+  ++RV+VGPR +L   RI L
Sbjct: 252 VDLDGRHLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRL 311

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQ 363
            ++NWLG G  E   +      V++RS+++P P  +  N +     V+    E GV+ GQ
Sbjct: 312 TDLNWLGGGTPES--LAELPVAVRVRSTREPRPARLSWNAEAACAEVELVAPEDGVSPGQ 369

Query: 364 ACVFYTSDSNEARVLGGGII 383
           ACV Y  D   A+VLGGG I
Sbjct: 370 ACVIYADDGPRAQVLGGGTI 389


>gi|218532352|ref|YP_002423168.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium
           chloromethanicum CM4]
 gi|218524655|gb|ACK85240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium chloromethanicum CM4]
          Length = 410

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/382 (54%), Positives = 272/382 (71%), Gaps = 8/382 (2%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           + +  +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ R
Sbjct: 21  APSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHR 80

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           KG+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+
Sbjct: 81  KGACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFADSYLSGETPIPCVECNRS 140

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL + R+LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +
Sbjct: 141 VKFRDLLGLARELGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPE 196

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL  LRFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G
Sbjct: 197 QLAYLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPG 256

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV L+G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI
Sbjct: 257 EIVDLDGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRI 316

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVAS 361
            L ++NWLGDG  ED V       V++RS+++P P  +  N  +    V+    E GV+ 
Sbjct: 317 RLTDLNWLGDGTPEDIVERP--VAVRVRSTREPRPGRLSWNAAEACAEVELLVPEDGVSP 374

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACV Y  D   A+VLGGG I
Sbjct: 375 GQACVIYADDDPRAQVLGGGTI 396


>gi|210615810|ref|ZP_03290791.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787]
 gi|210150146|gb|EEA81155.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787]
          Length = 362

 Score =  483 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 210/368 (57%), Gaps = 13/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK +GYDVIGVT+Q++        +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAYLLKEEGYDVIGVTMQIWQDEDRAIQEENGGCCGLTAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVASDLGIPYYVMNFKKEFKENVIDYFVDEYLNGRTPNPCIACNRYVKWESLLKRSMDI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + R   L +DQ+Y L+  TQ+QL     P+G   
Sbjct: 122 GADYIATGHYARIEKLP----NGRYSLRRSATLAKDQTYALYNLTQEQLKRTLMPVGAYA 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE VR++A ++GL +A+K DSQDICFV  G Y + ++        EG+ V  +G ++GRH
Sbjct: 178 KEEVREIAEKIGLRVANKPDSQDICFVPDGNYAEFIEETIEKKIPEGNFVLSDGTVVGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQR+GLG+++G P+FV+ +   ++ V++G  E    + +   ++N++     
Sbjct: 238 KGITHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVIGSNEESLTYTLRANQLNFMSIEDL 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           ++   +  + F KIR +       V+R  +D V   FE+ +  V  GQA VFY  D    
Sbjct: 298 KEG--EKIRVFAKIRYNHKGAWCEVERIGEDEVRCTFEEQQRAVTPGQAVVFYDGD---- 351

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 352 YVLGGGTI 359


>gi|145639770|ref|ZP_01795372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittII]
 gi|145271138|gb|EDK11053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittII]
 gi|309750410|gb|ADO80394.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Haemophilus influenzae R2866]
          Length = 418

 Score =  483 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 47  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 217

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 218 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 276 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 336 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  ++     LGGGII+
Sbjct: 392 SAVTPGQSAVFYLGEA----CLGGGIIA 415


>gi|312172139|emb|CBX80396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score =  483 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 197/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ G+ V G+ ++ +      +    C A +D+ DA
Sbjct: 2   SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 59  QAVCDKLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAED 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R +     D   +  + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 119 LGADYIATGHYARRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+
Sbjct: 174 AKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+      + +    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ V
Sbjct: 292 LHWVD----RNVLSAPLRCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 348 FYLDEV----CLGGGIIE 361


>gi|159185866|ref|NP_356917.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium tumefaciens str. C58]
 gi|25298384|pir||AC3012 hypothetical protein trmU [imported] - Agrobacterium tumefaciens
           (strain C58, Dupont)
 gi|159141000|gb|AAK89702.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium tumefaciens str. C58]
          Length = 380

 Score =  483 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/377 (58%), Positives = 279/377 (74%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVA +LKR+GYDV+G+TLQLY+   A  R GSCCAGQD+ DARRVC+T+ + 
Sbjct: 1   MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV DYE RFR  VI PFA +YA GETP+PCV CN+TVKF+DLL+  ++LGAD LATGHY
Sbjct: 61  HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           IRSR         RR + RP+D +RDQS+FLFATTQ+Q+  LRFPLG + K   R LA E
Sbjct: 121 IRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALAEE 180

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           MGL +A K+DSQDICFV QGKY D++ ++    AL GDIVHL+G++LGRH+GI++YTIGQ
Sbjct: 181 MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRHDGIVHYTIGQ 240

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           RRG+GVA GEPL+VV+LD    RVIVGPRE+LE  R+YLR++NWLGDG        GF C
Sbjct: 241 RRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGALAADAGQGFTC 300

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           F K+RS++ P    +  +++G+YVD    E GVA GQACV Y++   +ARV GGG I  S
Sbjct: 301 FAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDARVYGGGFIDRS 360

Query: 387 KRSDAVEESLLSVIGDE 403
           +RS   E SL +++   
Sbjct: 361 ERSVDAEASLKALLEKP 377


>gi|260582389|ref|ZP_05850181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae NT127]
 gi|260094540|gb|EEW78436.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae NT127]
          Length = 418

 Score =  483 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L  N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 47  PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 217

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI
Sbjct: 218 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 275

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 276 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 336 LFSKGLIASQLHWVD----REPIRELLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 392 SAVTPGQSAVFYLCEV----CLGGGIIA 415


>gi|205822016|sp|Q12N64|MNMA_SHEDO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 27/379 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LL + GY+V G+ ++ +      +    C A  D+ DA+ V
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      L A
Sbjct: 67  CDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY+R R    D+      M R +D  +DQSYFL+  + +Q+    FP+G+++K 
Sbjct: 127 DYIAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKH 182

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VRD+A++MGL   DK DS  ICF+ + K+ D +       A  GDI    G+++G+H G
Sbjct: 183 EVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETPEGEVIGKHQG 240

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           ++ +T+GQR+GLG+        +P +VV  D   + +IV   G    L    + + +++W
Sbjct: 241 LMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVNQLHW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +             +  VK R  Q  VP  +  +D   + V F+     V  GQ+ VFY 
Sbjct: 301 VD----RKGPATDSQLVVKTRYRQTDVPCRISFDDPQRITVIFDSPVAAVTPGQSAVFYD 356

Query: 370 SDSNEARVLGGGIISGSKR 388
            D      LGGGII    R
Sbjct: 357 GDV----CLGGGIIDSLIR 371


>gi|110802009|ref|YP_699068.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens SM101]
 gi|123047295|sp|Q0SS39|MNMA_CLOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110682510|gb|ABG85880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens SM101]
          Length = 359

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 212/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARR
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GA
Sbjct: 63  VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+
Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H G
Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRTGNFVDKYGNVLGKHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D
Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + D  +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V
Sbjct: 294 KLEDPMEVEAKIRYSAKPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 350 VGGGIIES 357


>gi|28806117|dbj|BAC59393.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Vibrio parahaemolyticus RIMD 2210633]
          Length = 362

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 192/370 (51%), Gaps = 28/370 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK+ GY V G+ ++ +      +    C A +D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADAQAVCDKLGIH 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L    + L AD +A GH
Sbjct: 58  LHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R       +   +  M R +D  +DQSYFL+  + +Q+    FP+GD++K  VR +A 
Sbjct: 118 YVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAE 174

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E GL  A K DS  ICF+ + K+ + + R     A  G+I    G+++G+H G++ +T+G
Sbjct: 175 EQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLMYHTLG 232

Query: 266 QRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           QR+GL +          +P FV   D + + +I         L+   +   +++W+    
Sbjct: 233 QRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWVD--- 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNE 374
             + + D  KC VK R  Q  +P  +   DD  + V F++ ++ V  GQ+ VFY  D   
Sbjct: 290 -REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDV-- 346

Query: 375 ARVLGGGIIS 384
              LGGGII 
Sbjct: 347 --CLGGGIIE 354


>gi|148652768|ref|YP_001279861.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter sp. PRwf-1]
 gi|205816892|sp|A5WE20|MNMA_PSYWF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148571852|gb|ABQ93911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter sp. PRwf-1]
          Length = 398

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 134/405 (33%), Positives = 206/405 (50%), Gaps = 29/405 (7%)

Query: 1   MVVSEATRLNSLDLD-------KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
           M  S     N+ +L         NP   RVVV MSGGVDSSV A LL++ G+ V G+ ++
Sbjct: 1   MTTSTGFDNNAYNLPALRLSDVPNPAQTRVVVGMSGGVDSSVSAVLLQQAGFQVEGLFMK 60

Query: 54  LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
            +     ++    C A +D+ DA+ VCD I ++ +  ++   + + V   F + Y AG T
Sbjct: 61  NWEEDDGTE---YCTAMEDLADAQAVCDKIGINLHTANFAMEYWDRVFEHFLAEYQAGRT 117

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERD 172
           P P + CN+ +KF   L     LGAD +ATGHY R  + Y  +DG     + R +D  +D
Sbjct: 118 PNPDILCNKEIKFKAFLDYAVTLGADYIATGHYTRRSVNYTREDGLEVAHLMRGLDNNKD 177

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           QSYFL A    ++    FP+G+++K  VR +A E  L  A K DS  ICF+ + ++ D +
Sbjct: 178 QSYFLHAVGGDKIAKTLFPVGELEKPEVRRIAEEHDLITAKKKDSTGICFIGERRFKDFL 237

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNS 287
           ++     A  G+IV  +G  +G+H+G++ YT+GQR G+G+        EP FV+  D ++
Sbjct: 238 QQYLP--AKPGNIVTDDGITIGKHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLQKDLSN 295

Query: 288 SRVIVGP---RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
           + +IVG       L   R+   +++W+            G KC  K R  Q      V  
Sbjct: 296 NELIVGQGHDHPMLLSQRLTAYKLDWVERIAPAAIFSEQGLKCMAKTRYRQPDQSCTVFA 355

Query: 344 NDD---GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + D    V V F++ +  V  GQ+ VFY  +      LGGG+I  
Sbjct: 356 DSDDGSRVKVIFDEPQRAVTPGQSAVFYIGEV----CLGGGVIES 396


>gi|226951365|ref|ZP_03821829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|226837887|gb|EEH70270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ATCC 27244]
          Length = 377

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 205/379 (54%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R    + +  G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREISKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 QVRKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQAGKIVLDNGKEVGEHHG 236

Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR      G+  A     FV++ D  ++R+++G       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVF 367
           +     ++    GF+C  K R  Q      + R+D   +G+ V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSGEV----CLGGGVIHHT 369


>gi|17547442|ref|NP_520844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum GMI1000]
 gi|24638316|sp|Q8XVV4|MNMA_RALSO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17429745|emb|CAD16430.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum GMI1000]
          Length = 370

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 195/387 (50%), Gaps = 28/387 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 DTIATGHYARVR-----EAGGRFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G+H G
Sbjct: 174 RVREIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TKPGPIRTPDGKTIGQHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G +   K R  Q   P  V R   D + + F++++  V  GQ+ V Y 
Sbjct: 292 VAGH----PPAEGTQLAAKTRYRQADAPCAVTRATGDALTLTFQQAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396
            D      LGGGII+ ++ + ++E+++
Sbjct: 348 GDI----CLGGGIIASTE-AASLEQAV 369


>gi|168214260|ref|ZP_02639885.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969]
 gi|170714272|gb|EDT26454.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969]
          Length = 359

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARR
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GA
Sbjct: 63  VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+
Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G  LG+H G
Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNALGKHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D
Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V
Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 350 VGGGIIES 357


>gi|325577519|ref|ZP_08147881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160623|gb|EGC72747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 384

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 206/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA  +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGAHYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  GDI
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEELGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIASQLHWVD----REPIRELVRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII 
Sbjct: 357 SAVTPGQSAVFYLGEI----CLGGGIIE 380


>gi|182625650|ref|ZP_02953419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens D str. JGS1721]
 gi|177909052|gb|EDT71527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens D str. JGS1721]
          Length = 359

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARR
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GA
Sbjct: 63  VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+
Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H G
Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D
Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +   ++  V V FE  +  +  GQ+ VFY  D     V
Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENVRVKVSFEDKQRAITKGQSVVFYKDD----LV 349

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 350 VGGGIIES 357


>gi|329297165|ref|ZP_08254501.1| tRNA-specific 2-thiouridylase MnmA [Plautia stali symbiont]
          Length = 370

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 193/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIKLHKINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAADD 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R       D      + R +D  +DQSYFL+  + QQ+    FP+G +
Sbjct: 120 LGADYIATGHYVRRA-----DVDGTSQLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGKL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I  ++G+++G 
Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIETVDGEVVGE 232

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D   + +IV   G    L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKESSDDPWYVVDKDVARNTLIVAQGGDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+        V    +C VK R  Q  +P   +   DD + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RQPVTAALRCTVKTRYRQSDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D      LGGGII 
Sbjct: 349 FYLGDV----CLGGGIIE 362


>gi|329123820|ref|ZP_08252378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|327469307|gb|EGF14778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 418

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L  N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 47  PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQV 217

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G ++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 218 GQSLFPVGKIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 276 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 336 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 392 SAVTPGQSAVFYLGEV----CLGGGIIA 415


>gi|292488015|ref|YP_003530892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora CFBP1430]
 gi|292899233|ref|YP_003538602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC 49946]
 gi|291199081|emb|CBJ46192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC 49946]
 gi|291553439|emb|CBA20484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora CFBP1430]
          Length = 369

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ G+ V G+ ++ +      +    C A +D+ DA
Sbjct: 2   SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 59  QAVCDKLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAED 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 119 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+
Sbjct: 174 AKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+      + +    +C VK R  Q+ +P  V   D + + V F+     V  GQ+ V
Sbjct: 292 LHWVD----RNVLSAPLRCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 348 FYLDEV----CLGGGIIE 361


>gi|170755439|ref|YP_001780808.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B1 str.
           Okra]
 gi|205810574|sp|B1IIY2|MNMA2_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|169120651|gb|ACA44487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
          Length = 356

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D  +DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDRKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++IN++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + D  +   KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKDPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|326201928|ref|ZP_08191798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987723|gb|EGD48549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium papyrosolvens DSM 2782]
          Length = 359

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 207/368 (56%), Gaps = 14/368 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
             +V++ MSGGVDSSV AA+L + GY+VIGVTLQ++        K +G CC+   V DAR
Sbjct: 3   PKKVMLGMSGGVDSSVAAAILLKQGYEVIGVTLQIWQDMDEERQKSEGGCCSLSAVDDAR 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + + + +YV ++++ F   VI  F   Y  G TP PC+ CNR VK+  +L     +G
Sbjct: 63  RVANKLGIPYYVLNFKDIFNKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY +    + D    R I+ + +   +DQ+Y L+  TQQQL     P+GD  K
Sbjct: 123 IDYIATGHYAK---VMQDAKTGRFILKKSVTDRKDQTYALYNLTQQQLSHTLMPVGDYTK 179

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + +R++A+E+GL +A K DSQ+ICF+    Y   +        + G  +   G +LG H 
Sbjct: 180 DEIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFLDTKGNVLGNHK 239

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI++YT+GQR+GLG+A G+P+FVV ++  ++ V++G    +    +   ++N++      
Sbjct: 240 GIVHYTVGQRKGLGIAFGKPMFVVAVNPENNTVVLGDDSEVFSETLTASDLNFISI---- 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              +DG +   KIR S    P  +   +++ + V F+  +  +  GQ+ VFY  D     
Sbjct: 296 PKPIDGMRVNAKIRYSAKEAPATINVIDENRISVVFDIPQRAITPGQSVVFYDGDV---- 351

Query: 377 VLGGGIIS 384
           V+GGG I 
Sbjct: 352 VVGGGTIE 359


>gi|168207849|ref|ZP_02633854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens E str. JGS1987]
 gi|169343749|ref|ZP_02864748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens C str. JGS1495]
 gi|169298309|gb|EDS80399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens C str. JGS1495]
 gi|170660837|gb|EDT13520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens E str. JGS1987]
          Length = 359

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +VV+ MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARR
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GA
Sbjct: 63  VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+
Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H G
Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D
Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V
Sbjct: 294 KLEGHMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 350 VGGGIIES 357


>gi|68248779|ref|YP_247891.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae
           86-028NP]
 gi|68056978|gb|AAX87231.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 86-028NP]
          Length = 397

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 26  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 81

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 82  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 141

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 142 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQV 196

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 197 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 254

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 255 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 314

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 315 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 370

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 371 SAVTPGQSAVFYLGEV----CLGGGIIA 394


>gi|145637334|ref|ZP_01792994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittHH]
 gi|145269426|gb|EDK09369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittHH]
          Length = 383

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L  N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNTGDEAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIAGQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380


>gi|323485784|ref|ZP_08091119.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum
           WAL-14163]
 gi|323693136|ref|ZP_08107354.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum
           WAL-14673]
 gi|323400772|gb|EGA93135.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum
           WAL-14163]
 gi|323502619|gb|EGB18463.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum
           WAL-14673]
          Length = 359

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 205/368 (55%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEEPEIQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + + + +YV +++  F+  V+  F   Y  G+TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVAENLGIPYYVMNFKREFKENVMDYFVQEYIEGKTPNPCIACNRFVKWESLLKRSMDI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + +     +DQ+Y L+  TQ QL     P+G+  
Sbjct: 122 GADYIATGHYARIEQL----ENGRYTLRKSATAAKDQTYALYNLTQHQLSHTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A ++GL++A K DSQ+ICF+    Y   ++        EG+ V  +G++LGRH
Sbjct: 178 KDEIRGMADKIGLNVAHKPDSQEICFIPDHDYAKFIEENTDCRLPEGNFVDKDGRVLGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQR+GL +A+G P+FV  +  +++ V++G  E +   R+   ++NW+     
Sbjct: 238 KGITHYTVGQRKGLNLALGRPVFVTEIRPDTNEVVIGDNEDVFSRRLTCGKLNWMA---V 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E    DG K   KIR S    P  ++   +D V   F+  +     GQA VFY  +    
Sbjct: 295 EGLPDDGMKVTAKIRYSHKGAPCMIRTIGEDLVECVFDDPQRAATPGQAVVFYDGE---- 350

Query: 376 RVLGGGII 383
            V+GGG I
Sbjct: 351 YVVGGGTI 358


>gi|126667269|ref|ZP_01738242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter sp. ELB17]
 gi|126628214|gb|EAZ98838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter sp. ELB17]
          Length = 374

 Score =  481 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 188/381 (49%), Gaps = 23/381 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GY V G+ ++ ++    ++    C A  D+ DA+ V D I + 
Sbjct: 1   MSGGVDSSVAAWLLKEQGYQVEGLFMKNWDEDDGTE---YCTAMTDLADAQAVADHIGIK 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            +   +   + + V   F S Y AG TP P + CN+ VKF   L     LGAD +ATGHY
Sbjct: 58  LHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYAITLGADYIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R      DDG  +  + + +D  +DQSYFL A +  ++    FP+G+++K  VR +A  
Sbjct: 118 TRQCPL--DDGSGKAQLLKGLDDNKDQSYFLHAVSGDRIARTLFPVGELEKPEVRRIAEA 175

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL   DK DS  ICF+ + K+ D +K+     A  G I    G I+GRH G++ +TIGQ
Sbjct: 176 QGLVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGTIETPEGDIIGRHQGLMYHTIGQ 233

Query: 267 RRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+GLG+        EP +V   D   + +I         L    +    ++W+      +
Sbjct: 234 RQGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQGKNHPLLFSRGLVSGPVDWVA----AE 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           A    F+C  K R  Q      V   D GV V F+ ++  V  GQ+ VFY  +      L
Sbjct: 290 APSAKFRCMAKTRYRQPDQLCEVTVIDGGVKVVFDDAQRAVTPGQSAVFYDGEI----CL 345

Query: 379 GGGIISGSKRSDAVEESLLSV 399
           GGG+I  + R      + L+ 
Sbjct: 346 GGGVIEHTWRDGEPLPARLTT 366


>gi|294650884|ref|ZP_06728231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292823302|gb|EFF82158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 377

 Score =  481 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 205/379 (54%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R    + +  G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 QVRKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQAGKIVLDNGKEVGEHHG 236

Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR      G+  A     FV++ D  ++R+++G       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVF 367
           +     ++    GF+C  K R  Q      + R+D   +G+ V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSGEV----CLGGGVIHHT 369


>gi|323340632|ref|ZP_08080884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091755|gb|EFZ34375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 375

 Score =  481 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/384 (34%), Positives = 195/384 (50%), Gaps = 25/384 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ +K S   G C   +D  D  +V +
Sbjct: 8   RVVVGMSGGVDSSVCAYLLKRQGYDVVGVFMKNWDEKKDS---GVCTVTEDYQDVAKVAN 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + +Y  ++E+ + + V   F   Y  G TP P V CN+ VKF   L    +L AD +
Sbjct: 65  EIGIPYYSVNFEKEYWDGVFTYFLDEYRHGRTPNPDVMCNKEVKFKAFLDYAMELDADYI 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A GHY + +    DDG     + R  D  +DQ+YFL   + +QL    FP+G M+K  VR
Sbjct: 125 AMGHYAQIKR--DDDGTVH--LMRGADQNKDQTYFLSQLSGKQLEKAMFPIGGMQKSEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A++ GL  ADK DS  +CF+ +  +   +       A  G ++   G+  G H G++N
Sbjct: 181 EIAKKAGLATADKKDSTGVCFIGERNFSKFLSEFLP--AKPGKMMTFEGEYKGEHFGLMN 238

Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
           YTIGQRRGLG+       EP FVV  D  ++ + VG     E L    +   +++++   
Sbjct: 239 YTIGQRRGLGIGGDGKSNEPWFVVGKDLKTNTLYVGQGYHNEHLYATSLDATKLSFVA-- 296

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372
              +     F C  K R  Q    V V  ND+   V V F+     +  GQ  VFY  + 
Sbjct: 297 -PIEDRGQSFHCTAKFRYRQKDSGVTVNFNDERNKVEVVFDNPVRAITPGQEIVFYDGE- 354

Query: 373 NEARVLGGGIISGSKRSDAVEESL 396
                LG G I  + ++  + + +
Sbjct: 355 ---ECLGSGTIDHAYQNGRLLQYV 375


>gi|8039809|sp|P44551|MNMA_HAEIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 383

 Score =  481 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 241 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380


>gi|310767364|gb|ADP12314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia sp. Ejp617]
          Length = 369

 Score =  481 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ G+ V G+ ++ +           C A +D+ DA
Sbjct: 2   SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEDDDEA---YCTAAEDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 59  QAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+    + +    FP+G++
Sbjct: 119 LGADYIATGHYVRRQ-----DVGGKSRLLRGLDGNKDQSYFLYTLGHEHIAQSLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+
Sbjct: 174 AKPEVRRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+   +         +C VK R  Q+ +P  V   D + + V F+     V  GQ+ V
Sbjct: 292 LHWVDRSVLS----APLRCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 348 FYLDEV----CLGGGVIE 361


>gi|71281561|ref|YP_269601.1| tRNA-specific 2-thiouridylase MnmA [Colwellia psychrerythraea 34H]
 gi|123632113|sp|Q480B8|MNMA_COLP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71147301|gb|AAZ27774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Colwellia psychrerythraea 34H]
          Length = 375

 Score =  481 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 192/387 (49%), Gaps = 31/387 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K P+  +V+V MSGGVDSSV A LLK  GY V G+ ++ +      +    C A QD+ 
Sbjct: 7   TKAPEQTKVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDTDE---YCAASQDLE 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+ +CD +++  +  ++   + + V   F + Y AG TP P + CN+ +KF   L    
Sbjct: 64  DAQAICDKLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAC 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY++  L           M R +D  +DQSYFL+   + QL    FP+G
Sbjct: 124 EDLGADYIATGHYVQRELRDNS-----WKMIRGLDNNKDQSYFLYTLDEAQLAHTLFPVG 178

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR +A + GL   +K DS  ICF+ + K+ D + +     A  G I    G  +
Sbjct: 179 HIEKPEVRAIAEKAGLITHNKKDSTGICFIGERKFKDFLGQYLP--AQPGIIESAEGVAV 236

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G H+G++ +T+GQR+GL +        EP +VV  D   + +IVG       L    +  
Sbjct: 237 GHHDGLMYHTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIVGQGHNHPRLFSKGLIA 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY----VDFEKSEVGVAS 361
            +++W+       A+    +C VK R  Q+ V   V    D       +DF + +  V  
Sbjct: 297 NQLHWVD----RKALTSSIQCTVKTRYRQEDVSCTVTPITDSATEEYQIDFTEQQSSVTP 352

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKR 388
           GQ+ VFY  D      LGGGII    R
Sbjct: 353 GQSVVFYKDDV----CLGGGIIDTLIR 375


>gi|205822340|sp|A9W8W7|MNMA_METEP RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 385

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/377 (55%), Positives = 268/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 1   MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 61  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLGLARDLGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPEQLAYL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++       G+IV L
Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLGDG  ED         V++RS+++P P  +  N  +    V+    E GV+ GQACV
Sbjct: 297 NWLGDGAPEDIAERP--VAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 354

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 355 IYADDDPRAQVLGGGTI 371


>gi|170760751|ref|YP_001786568.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|205810328|sp|B1KZE1|MNMA1_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|169407740|gb|ACA56151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 356

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 212/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCITCNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G +LGRH G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNVLGRHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++IN++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   +DG V V+F++ +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFQEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|283478712|emb|CAY74628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia pyrifoliae DSM 12163]
          Length = 384

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ G+ V G+ ++ +           C A +D+ DA
Sbjct: 17  SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEDDDEA---YCTAAEDLADA 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 74  QAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 133

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+    + +    FP+G++
Sbjct: 134 LGADYIATGHYVRRQ-----DMGGKSRLLRGLDGNKDQSYFLYTLGHEHIAQSLFPVGEL 188

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+
Sbjct: 189 AKPEVRRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 246

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 247 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 306

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+   +         +C VK R  Q+ +P  V   D + + V F+     V  GQ+ V
Sbjct: 307 LHWVDRSVLS----ASLRCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 362

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 363 FYLDEV----CLGGGVIE 376


>gi|259908739|ref|YP_002649095.1| tRNA-specific 2-thiouridylase MnmA [Erwinia pyrifoliae Ep1/96]
 gi|224964361|emb|CAX55870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia pyrifoliae Ep1/96]
          Length = 369

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ G+ V G+ ++ +           C A +D+ DA
Sbjct: 2   SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEDDDEA---YCTAAEDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 59  QAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +     D   +  + R +D  +DQSYFL+    + +    FP+G++
Sbjct: 119 LGADYIATGHYVRRQ-----DMGGKSRLLRGLDGNKDQSYFLYTLGHEHIAQSLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR +A ++ L  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G+
Sbjct: 174 AKPEVRRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           ++W+   +         +C VK R  Q+ +P  V   D + + V F+     V  GQ+ V
Sbjct: 292 LHWVDRSVLS----ASLRCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 348 FYLDEV----CLGGGVIE 361


>gi|168178604|ref|ZP_02613268.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226948452|ref|YP_002803543.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670342|gb|EDT82316.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226842334|gb|ACO85000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 356

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 208/368 (56%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +    DD V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDDRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|154503928|ref|ZP_02040988.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149]
 gi|153795527|gb|EDN77947.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149]
          Length = 356

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 206/365 (56%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +  A +  G CC    V DARRV
Sbjct: 3   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEEQAAQEENGGCCGLSAVDDARRV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GA+
Sbjct: 63  AAALEIPYYVMNFKKEFKENVIDYFVEEYQNGRTPNPCIACNRYVKWESLLQRSLSIGAE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R  + R   L +DQ+Y L+  TQ+QL     P+G   K+ 
Sbjct: 123 YIATGHYARVVQL----ENGRYTLRRSATLAKDQTYALYNLTQEQLKRTLMPVGKYTKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++ L IA+K DSQDICFV  G Y   ++        EG+ V  +G +LGRH GI
Sbjct: 179 VRAIAEKINLRIANKPDSQDICFVPDGDYAAYIEEEAGVKVPEGNFVLTDGTVLGRHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+A+G P FV+ +   ++ V++G +E     ++  R +N++      + 
Sbjct: 239 THYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTKEESMTTQLRARNLNFMAV----ED 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +    F KIR +       +++  +D V   F++ +  V  GQA VFY  +     VL
Sbjct: 295 LTEPLHVFTKIRYNHKGAWCTIEKTGEDEVLCTFDEPQRAVTPGQAVVFYDGE----YVL 350

Query: 379 GGGII 383
           GGG I
Sbjct: 351 GGGTI 355


>gi|145641507|ref|ZP_01797085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
 gi|145273798|gb|EDK13666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.4-21]
          Length = 362

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 204/376 (54%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ 
Sbjct: 2   RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LG
Sbjct: 59  VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G++KK
Sbjct: 119 ADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++G+I+GRH+
Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHD 231

Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        L    +   +++
Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLH 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +  V  GQ+ VFY
Sbjct: 292 WVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQSAVTPGQSAVFY 347

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGGII+
Sbjct: 348 LGEV----CLGGGIIA 359


>gi|322805504|emb|CBZ03068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 356

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|145635278|ref|ZP_01790981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittAA]
 gi|205822421|sp|Q4QP16|MNMA_HAEI8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145267422|gb|EDK07423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittAA]
          Length = 383

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 241 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380


>gi|282851667|ref|ZP_06261032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 224-1]
 gi|311110534|ref|ZP_07711931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri MV-22]
 gi|205822450|sp|Q042R4|MNMA_LACGA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|282557635|gb|EFB63232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 224-1]
 gi|311065688|gb|EFQ46028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri MV-22]
          Length = 375

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 195/384 (50%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSEIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L
Sbjct: 60  KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +++    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 120 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A + GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VF
Sbjct: 294 FFTGQPEHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370


>gi|323524770|ref|YP_004226923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1001]
 gi|323381772|gb|ADX53863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1001]
          Length = 381

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 182/394 (46%), Gaps = 30/394 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 RVRKIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  HR+     +W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHRLTAGNTSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDDGVYVDFEKSEVGVASGQACVF 367
           +      +   +GF C  K R  Q              D   + F+ ++  V  GQ+ V 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADARCTFSAAGAGGDLFQLTFDDAQWAVTPGQSAVL 347

Query: 368 YTSDSNEARVLGGGIIS-GSKRSDAVEESLLSVI 400
           Y  D      LGGGII   +    A  E   + +
Sbjct: 348 YDGDV----CLGGGIIEQAATAQPAAREPQKAAL 377


>gi|116629824|ref|YP_814996.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus gasseri ATCC 33323]
 gi|116095406|gb|ABJ60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri ATCC 33323]
          Length = 383

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 195/384 (50%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 11  DNSEIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L
Sbjct: 68  KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 127

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +++    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 128 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 183

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A + GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 184 KPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 241

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 242 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 301

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VF
Sbjct: 302 FFTGQPEHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 358

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 359 YNGE----ECLGGATIDRAYQNEK 378


>gi|152997270|ref|YP_001342105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
 gi|205816876|sp|A6W0E1|MNMA_MARMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150838194|gb|ABR72170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
          Length = 390

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 194/384 (50%), Gaps = 27/384 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L       D +V+V MSGGVDSSV A +L + GY V G+ ++ ++    ++    C A  
Sbjct: 22  LTAQPANHDKKVIVGMSGGVDSSVSALILMQQGYQVEGLFMKNWDEDDGTE---YCTAKD 78

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L 
Sbjct: 79  DLADAQAVSDKLGIKLHTANFASEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLE 138

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               L AD +ATGHY+R     G+      ++ + +D  +DQSYFL+A  + ++    FP
Sbjct: 139 YAMALNADYIATGHYVRRGEKNGE-----PLLLKGLDGNKDQSYFLYAVGKDEIAKTLFP 193

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR LA E GL   +K DS  ICF+ + ++ D +++     A  GDI  L G 
Sbjct: 194 VGELEKTEVRRLAEEFGLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETLEGD 251

Query: 252 ILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303
            + RH+G++ +TIGQR+GLG+        +P +VV  D   + +IV   G  ESL    +
Sbjct: 252 KIARHHGLMYHTIGQRQGLGIGGLAKYSDDPWYVVEKDLERNVLIVTQGGQHESLFKTHL 311

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362
                +W+      +       C  K R  Q      + +  D  V V F + +  V  G
Sbjct: 312 IADNFDWVA----REKPTFPLTCKAKCRYRQSDQECTINELADGRVEVSFVEPQRAVTPG 367

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q+ VFY  D      LGGGII+ +
Sbjct: 368 QSVVFYVDDV----CLGGGIINVA 387


>gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO
           3956]
 gi|229486413|sp|B2GB92|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Lactobacillus fermentum IFO 3956]
          Length = 377

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 198/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   +  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D      + R  D  +DQ+YFL      QL  + FPL    
Sbjct: 120 GADYVATGHYADLKR----DEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K+ VR LA++ GL +ADK DS  ICF+ + G + + + +     A +G++  ++G+++G 
Sbjct: 176 KKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGT 233

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQR+GLG+       +P FV+  D   + + VG     E L    +   +I
Sbjct: 234 HAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +    +   F C  K R  Q    V V+ +DDG  V V  +     +  GQA V
Sbjct: 294 HWVDDVVSRYGM--EFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  D      LG  II  +   +   + +
Sbjct: 352 FYDGD----ECLGSAIIDRAYNQERQLQYV 377


>gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 367

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 135/381 (35%), Positives = 202/381 (53%), Gaps = 24/381 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++    +   G C A  D  D
Sbjct: 2   KEKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + 
Sbjct: 59  AVAVSNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R+     D      +M R +D  +DQ+YFL   +Q+Q+ D+ FP+G+ 
Sbjct: 119 LGADYVATGHYARA-----DRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKDVLFPVGEF 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR++A +  L  ADK DS  ICF+ +  + + +       A  G+IV   G ILG+
Sbjct: 174 EKKEVREIAHKYNLATADKKDSTGICFIGERDFNEFLSNYLP--AQPGNIVDTEGHILGK 231

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           H+G++ +TIGQRRGLG+   GE  FV   D  ++ +IV        L  +++Y  E + +
Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKNNELIVCQGRNNPLLFSNKLYASEFSTI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            D        + F C  K R  Q  +   V+   +G V V ++K+   V  GQA VFY  
Sbjct: 292 SD----KKCPEEFDCTAKFRYRQKDINAHVKVLGEGKVEVTYDKT-KAVTPGQAAVFYQG 346

Query: 371 DSNEARVLGGGIISGSKRSDA 391
           +      LG  II      D 
Sbjct: 347 EV----CLGSAIIDEVYNDDK 363


>gi|76810425|ref|YP_334767.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
           1710b]
 gi|126451955|ref|YP_001067626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106a]
 gi|242317503|ref|ZP_04816519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106b]
 gi|254191526|ref|ZP_04898029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194966|ref|ZP_04901396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei S13]
 gi|254261623|ref|ZP_04952677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1710a]
 gi|254299216|ref|ZP_04966666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 406e]
 gi|123598034|sp|Q3JNT6|MNMA_BURP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811476|sp|A3NZ55|MNMA_BURP0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76579878|gb|ABA49353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1710b]
 gi|126225597|gb|ABN89137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106a]
 gi|157808903|gb|EDO86073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 406e]
 gi|157939197|gb|EDO94867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169651715|gb|EDS84408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei S13]
 gi|242140742|gb|EES27144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1106b]
 gi|254220312|gb|EET09696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1710a]
          Length = 383

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 183/395 (46%), Gaps = 32/395 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G+H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367
                 +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V 
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348

Query: 368 YTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400
           Y  D      LGGGII    + R+          +
Sbjct: 349 YDGDV----CLGGGIIESAATGRAGTAPAGRAPAL 379


>gi|326390968|ref|ZP_08212518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993010|gb|EGD51452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 376

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 141/374 (37%), Positives = 212/374 (56%), Gaps = 14/374 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +       +G CC+   V D
Sbjct: 14  KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 74  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 133

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ +RR ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 134 IDAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 309 --DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI-- 364

Query: 375 ARVLGGGIISGSKR 388
             V+GGG I    R
Sbjct: 365 --VVGGGTIERKVR 376


>gi|330954571|gb|EGH54831.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7]
          Length = 357

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 193/374 (51%), Gaps = 26/374 (6%)

Query: 29  GGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY 88
           GGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VCD I +  +
Sbjct: 1   GGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCDKIGIKLH 57

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148
             ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD++ATGHY+R
Sbjct: 58  TANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHYVR 117

Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
            R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  VR +A + G
Sbjct: 118 RR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVRAIAEKHG 172

Query: 209 LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRR 268
           L  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++ +TIGQR+
Sbjct: 173 LATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMYHTIGQRQ 230

Query: 269 GLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAV 320
           GLG+        +P +V+  D +++ +IVG       L    +   EI W+         
Sbjct: 231 GLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVNPIDLSSP- 289

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               K   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +      LGG
Sbjct: 290 ---RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI----CLGG 342

Query: 381 GIISGSKRSDAVEE 394
           G+I  ++   + ++
Sbjct: 343 GVIEIAEPWTSKDK 356


>gi|290475827|ref|YP_003468719.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus bovienii SS-2004]
 gi|289175152|emb|CBJ81955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus bovienii SS-2004]
          Length = 367

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVAGLFMKNWEEDDDEE---YCSAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R R     D      + R +D  +DQSYFL+  + QQ+    FP+G++
Sbjct: 120 LGADYIATGHYVRRR-----DVDGISQLLRGLDGNKDQSYFLYTLSHQQIAKSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR LA E+GL  A K DS  ICF+ + K+ D + R     A  G I+ ++GQ +G+
Sbjct: 175 EKPEVRRLAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGSIITVDGQTIGQ 232

Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        L    +  ++
Sbjct: 233 HTGLMYHTLGQRKGLGIGGTKDGSEEAWYVVDKDVENNTLIVAQGHDHPRLMSVGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           ++W+       A+    +C VK R  Q  +P  V   ++D + V F+     V  GQ+ V
Sbjct: 293 LDWVD----RQALKTEIRCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGG+I 
Sbjct: 349 FYQGEI----CLGGGVIE 362


>gi|167847243|ref|ZP_02472751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei B7210]
          Length = 373

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 180/379 (47%), Gaps = 30/379 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G+H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367
                 +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V 
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y  D      LGGGII  +
Sbjct: 349 YDGDV----CLGGGIIESA 363


>gi|83590486|ref|YP_430495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moorella thermoacetica ATCC 39073]
 gi|123524262|sp|Q2RHY7|MNMA_MOOTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83573400|gb|ABC19952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moorella thermoacetica ATCC 39073]
          Length = 357

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 147/364 (40%), Positives = 206/364 (56%), Gaps = 13/364 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCDT 82
           +VAMSGGVDSS  AALLK  GY+VIGVTL L+         +  CC+ + V DARRV + 
Sbjct: 1   MVAMSGGVDSSTAAALLKEAGYEVIGVTLALWPEDTPPPPGETGCCSLKAVDDARRVANI 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++ +YV ++ + F   VI  F +SY  GETP PC+ CNR +KF  LL+  R LG D +A
Sbjct: 61  LDIPYYVLNFRDLFEREVIDYFIASYLEGETPNPCIACNRRIKFGALLAKARALGIDYIA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      D  K R ++ R  D  +DQSY L+  TQ+QL     PLGD  K  VR+
Sbjct: 121 TGHYARRWY---DKEKGRYLLARGRDAGKDQSYALYTFTQEQLAHTLLPLGDYTKVEVRE 177

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL +A K++SQ+ICFV +G Y D ++         G I+   G++LG+H G+  Y
Sbjct: 178 IAARYGLPVARKAESQEICFVTEGDYRDYIQSRAREKIKPGPILDTRGRVLGQHRGLPFY 237

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P FVV LD   + VIVG +E LE   +Y R+ N++        +  
Sbjct: 238 TIGQRKGLGLALGKPCFVVALDPERNAVIVGDKEDLERRVLYARDNNYI----LWGELPG 293

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   +IR               G   ++F++ +  +  GQA V+Y  D     V+GGG
Sbjct: 294 KARVTARIRYRAPEAAATWHPLAGGRARLEFDEPQRAITPGQAVVYYQGD----LVVGGG 349

Query: 382 IISG 385
            I  
Sbjct: 350 TIES 353


>gi|53720497|ref|YP_109483.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
           K96243]
 gi|126440060|ref|YP_001060365.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 668]
 gi|167817350|ref|ZP_02449030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 91]
 gi|167904220|ref|ZP_02491425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei NCTC 13177]
 gi|217421190|ref|ZP_03452695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 576]
 gi|81379110|sp|Q63QY5|MNMA_BURPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205813851|sp|A3NDE4|MNMA_BURP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52210911|emb|CAH36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|126219553|gb|ABN83059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 668]
 gi|217396602|gb|EEC36619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 576]
          Length = 383

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 182/395 (46%), Gaps = 32/395 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367
                 +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V 
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348

Query: 368 YTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400
           Y  D      LGGGII    + R+          +
Sbjct: 349 YDGDV----CLGGGIIESAATGRAGTAPAGRAPAL 379


>gi|299065725|emb|CBJ36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum CMR15]
          Length = 370

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 131/385 (34%), Positives = 191/385 (49%), Gaps = 28/385 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPL +M K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLSEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G+H G
Sbjct: 174 RVREIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TQPGPIRTPDGKTIGQHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G +   K R  Q   P  V   + D + + FE+++  V  GQ+ V Y 
Sbjct: 292 VAGH----PPAEGTQLAAKTRYRQADAPCAVTSASGDALTLTFEQAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSKRSDAVEE 394
            D      LGGGII+ ++ +  VE+
Sbjct: 348 GDI----CLGGGIIASTE-AAPVEQ 367


>gi|323172490|gb|EFZ58127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli LT-68]
 gi|323947563|gb|EGB43567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H120]
          Length = 357

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD +ATGH
Sbjct: 58  LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A 
Sbjct: 118 YVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++ +T+G
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230

Query: 266 QRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317
           QR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+      
Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD----R 286

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  +     
Sbjct: 287 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEV---- 342

Query: 377 VLGGGIIS 384
            LGGGII 
Sbjct: 343 CLGGGIIE 350


>gi|237794471|ref|YP_002862023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
 gi|229260617|gb|ACQ51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
          Length = 356

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY   + +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIKKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   DDG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|331662546|ref|ZP_08363469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA143]
 gi|331060968|gb|EGI32932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA143]
          Length = 357

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD +ATGH
Sbjct: 58  LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A 
Sbjct: 118 YVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H G++ +T+G
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230

Query: 266 QRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317
           QR+GLG+        EP +VV  D  ++ +IV        L    +  ++++W+      
Sbjct: 231 QRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD----R 286

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  +     
Sbjct: 287 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEV---- 342

Query: 377 VLGGGIIS 384
            LGGGII 
Sbjct: 343 CLGGGIIE 350


>gi|145633601|ref|ZP_01789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 3655]
 gi|229847290|ref|ZP_04467393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 7P49H1]
 gi|144985807|gb|EDJ92421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 3655]
 gi|229809833|gb|EEP45556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 7P49H1]
          Length = 383

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      L AD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLCADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 357 SAVTPGQSAVFYLDEV----CLGGGIIA 380


>gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
 gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
          Length = 377

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 197/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   +  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D      + R  D  +DQ+YFL      QL  + FPL    
Sbjct: 120 GADYVATGHYADLKR----DEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K+ VR LA++ GL +ADK DS  ICF+ + G + + + +     A +G++  ++G+++G 
Sbjct: 176 KKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGT 233

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQR+GLG+       +P FV+  D   + + VG     E L    +   +I
Sbjct: 234 HAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q    V V+ +DDG  V V  +     +  GQA V
Sbjct: 294 HWVDDVVSRYGT--EFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  D      LG  II  +   +   + +
Sbjct: 352 FYDGD----ECLGSAIIDRAYNQERQLQYV 377


>gi|229845165|ref|ZP_04465299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 6P18H1]
 gi|229811876|gb|EEP47571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 6P18H1]
          Length = 383

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      L AD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLCADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 357 SAVTPGQSAVFYLDEV----CLGGGIIA 380


>gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703]
 gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech703]
          Length = 370

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 195/379 (51%), Gaps = 29/379 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V MSGGVDSSV A LL++ GY V G+ ++ +     ++    C A  D+ DA
Sbjct: 3   DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135
           + VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LCADYIATGHYVRRQ-----DIAGKSRLLRGLDNNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K  VR +A E+ L  A K DS  ICF+ + K+ D + R     A  G I+ + +G+ +G
Sbjct: 175 EKPQVRRIAEELDLATAKKKDSTGICFIGERKFRDFLARYLP--AQPGAIISVDDGKTMG 232

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H G++ +T+GQR+GLG+        +P +VV  D  ++ + V        L    +  +
Sbjct: 233 EHQGLMYHTLGQRKGLGIGGVRDGGDDPWYVVDKDVANNILYVAQGHEHPRLMSQGLIAQ 292

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365
           +++W+      + +     C VK R  Q  +P  +    ++ V V FE     V  GQ+ 
Sbjct: 293 QLHWVD----REPLSQPQTCTVKTRYRQADIPCTLTPLGEERVEVRFESPVAAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  +      LGGGII 
Sbjct: 349 VFYQGEV----CLGGGIIE 363


>gi|323165641|gb|EFZ51428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella sonnei 53G]
          Length = 357

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VCD + + 
Sbjct: 1   MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGH 145
            +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD +ATGH
Sbjct: 58  LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A 
Sbjct: 118 YVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++GL  A K DS  ICF+ + K+ + + R   G    G I+ ++G  +G H G++ +T+G
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLPG--QPGKIITVDGDEIGEHQGLMYHTLG 230

Query: 266 QRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317
           QR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+      
Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD----R 286

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  +     
Sbjct: 287 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEV---- 342

Query: 377 VLGGGIIS 384
            LGGGII 
Sbjct: 343 CLGGGIIE 350


>gi|325844820|ref|ZP_08168272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sp. HGF1]
 gi|325489007|gb|EGC91395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sp. HGF1]
          Length = 377

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 123/391 (31%), Positives = 192/391 (49%), Gaps = 28/391 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69
             K  +V+V MSGGVDSSV A LLK  GY+V GV ++ ++S   +   G+       C  
Sbjct: 3   ANKGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQ 62

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D  DA+ V D + +  +  D+ + + + V + F   Y AG TP P + CN+ VKF   
Sbjct: 63  EVDYNDAKAVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAF 122

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L     LG D +A GHY R         +    M R +D  +DQ+YFL   TQ QL    
Sbjct: 123 LDYAMNLGCDYIAMGHYARVSH------EGEVQMLRGLDNNKDQTYFLSQLTQAQLSKTL 176

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A ++ L  A K DS  +CF+ +  +   ++      A  G +  L 
Sbjct: 177 FPVGELQKSEVRAIAEKLDLATAKKKDSTGVCFIGERNFTQFLQNYLP--AQPGQMRTLE 234

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+++G H G++ YTIGQR+GLG+   G+  FV+  +   + ++VG     E +      +
Sbjct: 235 GEVVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALV 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
             +NW+      +  V  ++C  K R  Q  +PV +   +D+ + V   +    V  GQA
Sbjct: 295 SNVNWI----PSERFVGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
            VFY  +      LGGG I  + +     + 
Sbjct: 351 AVFYLDEV----CLGGGRIEVAYKDKEARQY 377


>gi|328957187|ref|YP_004374573.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4]
 gi|328673511|gb|AEB29557.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4]
          Length = 362

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 190/379 (50%), Gaps = 26/379 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A +LK+ GYDV+G+ ++ ++    +   G C A +D  D   V + I + 
Sbjct: 1   MSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYNDVALVANQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y  ++E+++ + V   F   Y  G TP P V CN+ +KF   L    +LGAD +ATGHY
Sbjct: 58  YYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYVATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG M+K  VR +A E
Sbjct: 118 AQ----VERDENGVTHMLRGLDNNKDQTYFLNQLSQEQLAKTLFPLGGMQKSEVRKIAEE 173

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI-- 264
            GL  A K DS  +CF+ +  +   +       A  G ++ ++G++ G+H+G++ YTI  
Sbjct: 174 AGLATAKKKDSTGVCFIGERDFKKFLMTYLP--AQPGSMMTVDGEVKGQHDGLMYYTIGQ 231

Query: 265 --GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319
             G   G G    +P FVV  D  ++ + VG     E L    +   ++++  +    + 
Sbjct: 232 RQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDLHFTTN----EE 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
               FKC  K R  Q    V VQ N+DG    V+F++    +  GQA VFY         
Sbjct: 288 KPRTFKCTAKFRYRQADTGVTVQLNEDGTAATVEFDEPVRAITPGQAVVFYDG----LEC 343

Query: 378 LGGGIISGSKRSDAVEESL 396
           LGGG I  +       + +
Sbjct: 344 LGGGTIDAAYNEKKELQYV 362


>gi|148379169|ref|YP_001253710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931319|ref|YP_001383546.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936775|ref|YP_001387095.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str.
           Hall]
 gi|205810260|sp|A7FT69|MNMA1_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|205810283|sp|A5I123|MNMA1_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|148288653|emb|CAL82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927363|gb|ABS32863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932689|gb|ABS38188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
          Length = 356

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAIGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L   ++  ++ N++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTKLIAKDTNYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|308513324|ref|NP_953615.2| tRNA-specific 2-thiouridylase MnmA [Geobacter sulfurreducens PCA]
 gi|81701559|sp|Q74A22|MNMA_GEOSL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41152729|gb|AAR35942.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sulfurreducens PCA]
 gi|298506604|gb|ADI85327.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter sulfurreducens KN400]
          Length = 365

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 165/373 (44%), Positives = 213/373 (57%), Gaps = 18/373 (4%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN----SRKASKRKGSCCAGQDV 73
               R+V+AMSGGVDSSV AALLK +G++VIG+++Q+++    +    ++  +CC+  D+
Sbjct: 4   KHRQRIVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYANFAAPEGEKFDTCCSLDDI 63

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DARRV + I +  YV ++EE FR  VI  F   Y  G TP PCV CN+ VKF  LL   
Sbjct: 64  HDARRVAEQIGIPFYVVNFEEEFRRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLHKA 123

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LGAD LATGHY R     G+DG     + R +D  +DQSYFLF  TQ QL    FPLG
Sbjct: 124 RELGADFLATGHYARR--VRGEDG--LYHLLRGLDPAKDQSYFLFTLTQDQLARTLFPLG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +M KE VR LA E GL +A+K +SQ+ICFV    Y   ++       + G+IV   G +L
Sbjct: 180 EMTKEQVRRLAAERGLRVAEKGESQEICFVPDDDYVRFLEEERGTGLMAGEIVDRKGNVL 239

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           GRH G   YT+GQRRGLG+A   PL+VV +D    +VIVGP E L    +   E+ W+  
Sbjct: 240 GRHGGTYRYTVGQRRGLGIAHPTPLYVVGVDAERRQVIVGPAEELLATGLTATEVTWVV- 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                      +   KIR    PVP  V    DG   V F + E  V  GQA VFY  D 
Sbjct: 299 ----PPQGQTVEASCKIRYRHQPVPCTVAVRADGSAEVRFRQPEKSVTPGQAVVFYRDD- 353

Query: 373 NEARVLGGGIISG 385
               VLGGG I G
Sbjct: 354 ---EVLGGGWIEG 363


>gi|226322606|ref|ZP_03798124.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758]
 gi|225208943|gb|EEG91297.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758]
          Length = 359

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 210/367 (57%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   ++   +  G CC    V DAR
Sbjct: 3   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEESKIQEENGGCCGLSAVDDAR 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V   I + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL+ + ++G
Sbjct: 63  KVAAQIGIPYYVMNFKKDFQEKVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTRSMEIG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +       +DQ+Y L+  TQ QL     P+G+ +K
Sbjct: 123 ADYIATGHYARVEQLP----NGRYAIRHSATWSKDQTYALYNLTQDQLRRTLMPVGEYEK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + +R++A+E+GL IA+K DSQDICFV    Y   ++  +     EG+ V  +G+ILGRH 
Sbjct: 179 DQIREIAKEIGLQIANKPDSQDICFVSDDDYASFIEEESDQKIPEGNFVTPDGKILGRHK 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQR+GLG+++G P FV+ +  +++ V++G  E L   R+   ++N++     E
Sbjct: 239 GIIHYTIGQRKGLGLSLGYPAFVLEIRPDTNEVVIGTNEDLMTTRVRANKLNFMTVEDLE 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  + F KIR +       V++  +D +   FE  +  V  GQA V Y  D     
Sbjct: 299 ----GEMRVFAKIRYNHKGDWCTVRKTGEDEIECIFETPQRAVTPGQALVLYDGD----Y 350

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 351 VLGGGTI 357


>gi|170691401|ref|ZP_02882566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia graminis C4D1M]
 gi|170143606|gb|EDT11769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia graminis C4D1M]
          Length = 381

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367
           +      +   +GF C  K R  Q        R +       + F+ ++  V  GQ+ V 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADARCTFSRANQREGLFELTFDDAQWAVTPGQSAVL 347

Query: 368 YTSDSNEARVLGGGIIS-GSKRSDAVEESLLSVI 400
           Y  D      LGGGII   +    AV E   + +
Sbjct: 348 YDGDV----CLGGGIIEHAATGQPAVREPQKAAL 377


>gi|325661222|ref|ZP_08149849.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472729|gb|EGC75940.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 357

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +G
Sbjct: 62  RVAAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +     L +DQ+Y L+  TQ+QL     P+G+  K
Sbjct: 122 ADYIATGHYARVVQL----ENGRYTLKCSATLAKDQTYALYNLTQEQLKRTLMPVGEYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR++A ++ L IA+K DSQDICFV  G Y   ++   A    EG+ V L+G++LGRH 
Sbjct: 178 DQVREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YT+GQR+GLG+++G P FV+ +   ++ +++G  E    + +   ++N++      
Sbjct: 238 GITHYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSLSYTLKANQLNFMSI---- 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    + + KIR +       ++++  D V   FE+ +  +  GQA VFY  +     
Sbjct: 294 EDLTGEMRVWTKIRYNHKGAWGTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGE----Y 349

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 350 VVGGGTI 356


>gi|254514300|ref|ZP_05126361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR5-3]
 gi|219676543|gb|EED32908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR5-3]
          Length = 368

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 192/383 (50%), Gaps = 26/383 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A +L   GY V G+ ++ ++    ++    C A  D  DA+ V
Sbjct: 4   PQKVIVGMSGGVDSSVAALMLLEQGYHVEGLFMKNWDEDDGTE---YCTAKADFADAQAV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + ++ +  ++   + + V   F + Y +G TP P + CNR +KF   L    +LGAD
Sbjct: 61  ADKLQITLHSANFAAEYWDNVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYALELGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R  +  G     R  + + +D  +DQSYFL A    +L    FPLG++ K  
Sbjct: 121 SIATGHYARRGVMQG-----RPALLKGLDANKDQSYFLHAVGHAELAKTLFPLGEIAKPE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A    L   DK DS  ICF+ + ++ D ++R     A  G I  L G  +G H+G+
Sbjct: 176 VRARAAAADLTTHDKKDSTGICFIGERRFKDFLQRYLP--AQPGVIKTLEGDTIGEHSGL 233

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +TIGQR+GLG+         P +V   D  ++ + V       +L    ++ +E+ W+
Sbjct: 234 MYHTIGQRQGLGIGGLATHNEAPWYVAGKDLGNNVLWVVQGNDHPALFSDELWAQELFWI 293

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +A     +C  K+R  Q      V ++ D   V F++ +  +  GQ+ VFY  +
Sbjct: 294 SG----EAPSLPLRCKAKVRYRQPDQDCTVIQDKDHYRVSFDQPQRAITPGQSVVFYQDN 349

Query: 372 SNEARVLGGGIISGSKRSDAVEE 394
           +     LGGG+I+ +  + A+  
Sbjct: 350 A----CLGGGVITDTGAALAIAA 368


>gi|315634990|ref|ZP_07890271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
 gi|315476252|gb|EFU67003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
          Length = 383

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L++  L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 11  PKLSAEQLAEN-GTKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 67  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKF 126

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA+ +ATGHY+R R    +       + R +D  +DQSYFL+  +++Q+
Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDANKDQSYFLYTLSKKQV 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 182 GQSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             + G I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV       +
Sbjct: 240 RTVEGDIIGRHDGLMYHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L    +  ++++W+        + +  +C VK R  Q  VP  ++  DD  + V F++ +
Sbjct: 300 LLSTGLIAQQLHWVD----RQPIREPLRCTVKTRYRQTDVPCTIEPIDDESIKVIFDEPQ 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
           + V  GQ+ VFY  +      LGGGII 
Sbjct: 356 IAVTPGQSAVFYLDEV----CLGGGIIE 379


>gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
          Length = 377

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 197/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F   +  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D      + R  D  +DQ+YFL      QL  + FPL    
Sbjct: 120 GADYVATGHYADLKR----DEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K+ VR LA++ GL +ADK DS  ICF+ + G + + + +     A +G++  ++G+++G 
Sbjct: 176 KKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGT 233

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQR+GLG+       +P FV+  D   + + VG     E L    +   +I
Sbjct: 234 HAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q    V V+ +DDG  V V  +     +  GQA V
Sbjct: 294 HWVDDVVSRYG--XEFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  D      LG  II  +   +   + +
Sbjct: 352 FYDGD----ECLGSAIIDRAYNQERQLQYV 377


>gi|153938615|ref|YP_001390533.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum F str.
           Langeland]
 gi|205810312|sp|A7GCM3|MNMA1_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|152934511|gb|ABS40009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|295318614|gb|ADF98991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. 230613]
          Length = 356

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGSILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
           MV-1A-US]
 gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
 gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus 214-1]
 gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus CTV-05]
 gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
           MV-1A-US]
 gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
 gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus 214-1]
 gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus CTV-05]
          Length = 375

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 192/393 (48%), Gaps = 29/393 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DTNGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLNASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D       C  K R  Q  + V V     D+   V F++    V  GQA V 
Sbjct: 294 FFTGKPDHDF---EMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +      LGGG I  + +    EE  L ++
Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|20808819|ref|NP_623990.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Thermoanaerobacter tengcongensis MB4]
 gi|24638308|sp|Q8R7F0|MNMA2_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|20517470|gb|AAM25594.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Thermoanaerobacter tengcongensis MB4]
          Length = 364

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 212/373 (56%), Gaps = 14/373 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76
           K+ RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +       +G CC+   V DA
Sbjct: 3   KNNRVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     +
Sbjct: 63  RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  K
Sbjct: 123 DAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG H
Sbjct: 180 KDKVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++     
Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISI--- 296

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D    
Sbjct: 297 -DKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI--- 352

Query: 376 RVLGGGIISGSKR 388
            V+GGGII    R
Sbjct: 353 -VVGGGIIERKVR 364


>gi|167920433|ref|ZP_02507524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei BCC215]
 gi|237813753|ref|YP_002898204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei MSHR346]
 gi|254180696|ref|ZP_04887294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1655]
 gi|184211235|gb|EDU08278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 1655]
 gi|237503455|gb|ACQ95773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei MSHR346]
          Length = 383

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 179/379 (47%), Gaps = 30/379 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367
                 +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V 
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y  D      LGGGII  +
Sbjct: 349 YDGDV----CLGGGIIESA 363


>gi|289578840|ref|YP_003477467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter italicus Ab9]
 gi|289528553|gb|ADD02905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter italicus Ab9]
          Length = 364

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 211/371 (56%), Gaps = 14/371 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +       +G CC+   V D
Sbjct: 2   KKNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 62  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 122 IEAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR LA+++GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 179 KKDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISI-- 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 297 --DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGKVFVKFDSPQRAITPGQSVVFYDGDI-- 352

Query: 375 ARVLGGGIISG 385
             V+GGGII  
Sbjct: 353 --VVGGGIIER 361


>gi|254519285|ref|ZP_05131341.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA]
 gi|226913034|gb|EEH98235.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA]
          Length = 360

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 215/368 (58%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GY+VIGVT++ ++       +R+G CC+   V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMKHFDDEDEDYIEREGGCCSLSSVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D + +  YV ++++ F+  VI  F   Y  G+TP PC+ CN+ +KF + L   + +G
Sbjct: 62  RVADKLGIPFYVLNFKDSFKEKVIDYFVQEYMEGKTPNPCIACNKHIKFDEFLRRAKGIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY +    +  +   R ++ +  D ++DQ+Y L+  TQ+QL     P GD  K
Sbjct: 122 ADYVATGHYAK----IEKNEDGRYLLIKADDDKKDQTYALYNFTQEQLSQTLMPCGDYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + +R++A+E+GL + +K DS++ICF+    +   +         EG+ V  NG ILG+H 
Sbjct: 178 DKIREIAKEIGLAVHNKKDSEEICFIPDNNHGKYILNARPNQVREGNFVDKNGNILGKHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI+ YTIGQR+GLG+A+G P+FV  ++  ++ V++GP E +    +  +++N++      
Sbjct: 238 GIVYYTIGQRKGLGLALGTPIFVTDINPRTNEVVIGPEEDVFKTDLVAKDVNFI----PF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +++ +    F K+R    P    +    DG V V F++ +  +  GQ+ VFY  +     
Sbjct: 294 NSLSEEITVFAKVRYQAKPSEAIISPLADGRVKVSFKEKQRAITKGQSVVFYDGNV---- 349

Query: 377 VLGGGIIS 384
           V+GGGII 
Sbjct: 350 VVGGGIIE 357


>gi|53726189|ref|YP_103922.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei ATCC 23344]
 gi|67642326|ref|ZP_00441084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei GB8 horse 4]
 gi|121599684|ref|YP_991629.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei SAVP1]
 gi|124385119|ref|YP_001027125.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10229]
 gi|126448036|ref|YP_001082070.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10247]
 gi|167000516|ref|ZP_02266328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei PRL-20]
 gi|254178980|ref|ZP_04885634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei ATCC 10399]
 gi|254202634|ref|ZP_04908997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei FMH]
 gi|254207974|ref|ZP_04914324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei JHU]
 gi|254355888|ref|ZP_04972166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei 2002721280]
 gi|81604334|sp|Q62H98|MNMA_BURMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811421|sp|A3MP84|MNMA_BURM7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811429|sp|A2S5A6|MNMA_BURM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811467|sp|A1V076|MNMA_BURMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52429612|gb|AAU50205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei ATCC 23344]
 gi|121228494|gb|ABM51012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei SAVP1]
 gi|124293139|gb|ABN02408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei NCTC 10229]
 gi|126240906|gb|ABO03999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei NCTC 10247]
 gi|147746881|gb|EDK53958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei FMH]
 gi|147751868|gb|EDK58935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei JHU]
 gi|148024863|gb|EDK83041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei 2002721280]
 gi|160694894|gb|EDP84902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei ATCC 10399]
 gi|238523456|gb|EEP86894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei GB8 horse 4]
 gi|243063570|gb|EES45756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia mallei PRL-20]
          Length = 383

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 182/395 (46%), Gaps = 32/395 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAVKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367
                 +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V 
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348

Query: 368 YTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400
           Y  D      LGGGII    + R+          +
Sbjct: 349 YDGDV----CLGGGIIESAATGRAGTAPAGRAPAL 379


>gi|300361472|ref|ZP_07057649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri JV-V03]
 gi|300354091|gb|EFJ69962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri JV-V03]
          Length = 383

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 11  DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L
Sbjct: 68  KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 127

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +++    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 128 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 183

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 184 KPQVREIAIAAGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 241

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 242 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 301

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VF
Sbjct: 302 FFTGLPDHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 358

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 359 YNGE----ECLGGATIDRAYQNEK 378


>gi|330432069|gb|AEC17128.1| tRNA-specific 2-thiouridylase MnmA [Gallibacterium anatis UMN179]
          Length = 384

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 206/393 (52%), Gaps = 29/393 (7%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
             ++   ++     +N +  +V+V MSGGVDSSV A +L++ GY V G+ ++ +     +
Sbjct: 7   TFTDLMTISPQQFAEN-QQKKVIVGMSGGVDSSVSAYILQQQGYQVEGLFMKNWEEDDDT 65

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN
Sbjct: 66  D---YCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCN 122

Query: 122 RTVKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           + +KF   L      LGAD +ATGHY+R R   GDD   +  + R +D  +DQSYFL+  
Sbjct: 123 KEIKFKAFLEYAAEDLGADYIATGHYVRRR---GDDENAQ--LLRGLDGNKDQSYFLYTL 177

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A
Sbjct: 178 SHKQVGQSLFPVGELEKPVVRQIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--A 235

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP- 294
             GDI  ++G+++GRH+G++ +T+GQR+GL +        E  +VV  D   + +IV   
Sbjct: 236 QPGDIRTVDGEVIGRHDGLMYHTLGQRKGLRIGGLKNAGDEAWYVVDKDLEHNELIVAQG 295

Query: 295 --RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVD 351
                L    +   +++W+        +    +C VK R  Q  VP   +  NDD + V 
Sbjct: 296 HNHPRLFSKGLIAGQLHWVD----RQPLKQPLRCTVKTRYRQQDVPCQIIPLNDDLIEVR 351

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            ++ ++ V  GQ+ VFY  +      LGGGII 
Sbjct: 352 LDEPQIAVTPGQSAVFYLDE----LCLGGGIIE 380


>gi|295695739|ref|YP_003588977.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Bacillus tusciae DSM 2912]
 gi|295411341|gb|ADG05833.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Bacillus tusciae DSM 2912]
          Length = 363

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/366 (41%), Positives = 213/366 (58%), Gaps = 14/366 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSSV AALLK  GYDVIG+T++L    + S  +G CC+  DV DARRVC +
Sbjct: 6   VVVAMSGGVDSSVTAALLKERGYDVIGITMRLRGGEETSSGRG-CCSVDDVSDARRVCQS 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  Y  +Y E F   VI  F   Y  G TP PC+ CN  +K+  LL     LGAD LA
Sbjct: 65  LGIPFYAVNYREAFEKRVIQYFEDEYKRGRTPNPCIACNMYMKYDLLLEQAVDLGADYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      D+ + R ++ +  D  +DQ+Y L+  TQ+QL    FPLG+ +K  VR+
Sbjct: 125 TGHYARVLY---DESRGRYVLRKAEDRRKDQTYVLYHLTQEQLARTLFPLGEYEKSEVRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIIN 261
           +AR+ GL +A+K++SQDICF+  G Y + ++R     A+  GD V   G ++GRH G+  
Sbjct: 182 MARKFGLRVANKAESQDICFIPNGDYGEFLRRRMGDSAVAPGDFVDTEGHVVGRHEGVSF 241

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLGVA+G P++VV +    +RV++GP+E +    +   ++NWL        + 
Sbjct: 242 YTIGQRKGLGVAVGHPVYVVDIQPERNRVVLGPKERVFSPGLVASKVNWLSLPRPNGPI- 300

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +   KIR         +   +   V V+F++ +  V  GQA VFY  +     V+GG
Sbjct: 301 ---RVSAKIRYGAPEAAATLYPEEAGRVRVEFDEPQRAVTPGQAVVFYRGE----EVVGG 353

Query: 381 GIISGS 386
           G I  S
Sbjct: 354 GTIEKS 359


>gi|15603201|ref|NP_246275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|14195272|sp|Q9CLA3|MNMA_PASMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|12721705|gb|AAK03420.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/395 (30%), Positives = 209/395 (52%), Gaps = 29/395 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +    L++  L +N +  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 8   THFPPLSAEQLAEN-RKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 65

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ 
Sbjct: 66  --YCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKE 123

Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R       +   +  + R +D  +DQSYFL+  ++
Sbjct: 124 IKFKAFLDYAAEDLGADYIATGHYVRRG-----EKDGQCQLLRGLDNNKDQSYFLYTLSK 178

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 179 DQVAQSLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 236

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 237 GEIRTVEGKVVGRHDGLMYHTLGQRKGLGIGGVKGMGEDPFYVVEKDLVNNVLVVAQGHD 296

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        +    +C VK R  Q+ +P  +Q  ND+ + V F+
Sbjct: 297 NSALLSSGLIASQLHWVD----RQPIRQPVRCTVKTRYRQEDIPCEIQPINDETIRVVFD 352

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           + ++ V  GQ+ VFY  +      LGGG+I    +
Sbjct: 353 EPQIAVTPGQSAVFYQGEI----CLGGGVIETQIK 383


>gi|262372981|ref|ZP_06066260.1| tRNA methyl transferase [Acinetobacter junii SH205]
 gi|262313006|gb|EEY94091.1| tRNA methyl transferase [Acinetobacter junii SH205]
          Length = 377

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 205/384 (53%), Gaps = 23/384 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R  +   +  G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGVSTQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 EVRRIAEQLDLATAKKKDSTGICFIGERRFTDFLKQYLP--AQAGKIVLDNGKEVGEHHG 236

Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR      G+  A     FV++ D  ++R+++G       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGIGGMKGAQEGAWFVLHKDIANNRLVIGQGHEHPLMQSKQLWSEAIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVF 367
           +     ++    GF+C  K R  Q      + R+   ++G+ V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QEIPTTGFRCTAKTRYRQPDQACTIYRDEHTENGIRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y+ +      LGGG+I  +     
Sbjct: 355 YSGEV----CLGGGVIHHTDAPQP 374


>gi|168183036|ref|ZP_02617700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|182673881|gb|EDT85842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
          Length = 356

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 62  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY   + +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 122 DYVATGHYAIIKKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GL +A G+P++VV ++   + V++G  E L    +  ++ N++      D
Sbjct: 237 IVYYTIGQRKGLSIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   DDG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 293 TLKEPMEVEAKIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 IGGGIIEK 356


>gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1]
 gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1]
          Length = 375

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 192/393 (48%), Gaps = 29/393 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DANGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D       C  K R  Q  + V V     D+   V F++    V  GQA V 
Sbjct: 294 FFTGKPDHDF---EMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +      LGGG I  + +    EE  L ++
Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|297545060|ref|YP_003677362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842835|gb|ADH61351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 364

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 212/371 (57%), Gaps = 14/371 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  GY+VIGVT+Q++  +       +G CC+   V D
Sbjct: 2   KKNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVND 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 62  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ +RR ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 122 IDAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR LA+++GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 179 KKDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISI-- 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 297 --DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDSPQRAITPGQSVVFYDGDI-- 352

Query: 375 ARVLGGGIISG 385
             V+GGGII  
Sbjct: 353 --VVGGGIIER 361


>gi|238853983|ref|ZP_04644340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 202-4]
 gi|238833428|gb|EEQ25708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 202-4]
          Length = 375

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 194/384 (50%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSEIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F + Y  G TP P V CN+ +KF   L     L
Sbjct: 60  KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +++    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 120 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIAIYAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +  +  D+ V+V+F++    V  GQA VF
Sbjct: 294 FFTGQPEHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370


>gi|188583764|ref|YP_001927209.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium populi BJ001]
 gi|179347262|gb|ACB82674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium populi BJ001]
          Length = 395

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/381 (53%), Positives = 270/381 (70%), Gaps = 8/381 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
            +  +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RK
Sbjct: 7   SSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRK 66

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+V
Sbjct: 67  GACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSV 126

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL + R LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +Q
Sbjct: 127 KFRDLLGMARDLGAEALATGHYVASRAQP----EGGRALYRALDPARDQSYFLYATTPEQ 182

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++    A  G+
Sbjct: 183 LAFLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGE 242

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV L+G+ LG H GII+YT+GQRRGL +++GEPL+VV L+  ++RV+VGPR +L   RI 
Sbjct: 243 IVDLDGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIR 302

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASG 362
           L ++NWLG    +   +      V++RS+++P P  +  N  +  + V+    E GV+ G
Sbjct: 303 LTDLNWLGSRAPDG--LADLPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPG 360

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QACV Y  D   A+VLGGG I
Sbjct: 361 QACVIYADDGPRAQVLGGGTI 381


>gi|167039428|ref|YP_001662413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|300915481|ref|ZP_07132794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307725247|ref|YP_003904998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|166853668|gb|ABY92077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|300888541|gb|EFK83690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307582308|gb|ADN55707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
          Length = 376

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +       +G CC+   V D
Sbjct: 14  KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 74  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 133

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 134 IDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 309 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYDGDI-- 364

Query: 375 ARVLGGGIISGSKR 388
             V+GGG I    R
Sbjct: 365 --VVGGGTIERKVR 376


>gi|291562415|emb|CBL41231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [butyrate-producing bacterium SS3/4]
          Length = 358

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 14/367 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++    +   +  G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQEEDSCTVEENGGCCGLSAVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV  T+ + +YV ++ + F+  VI  F + Y  G TP PC+ CNR VK+  LL  + ++G
Sbjct: 62  RVAWTLGIPYYVMNFRKEFQKNVIDYFVAEYLHGRTPNPCIACNRYVKWEALLERSLEIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +   +   +DQ+Y L+  TQ QL     P+GD  K
Sbjct: 122 ADYIATGHYARISQLP----NGRYTIRNSVTAAKDQTYALYNLTQFQLSKTLMPIGDYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR +A + GL +A K DS +ICFV    Y   ++R  + +   G+ V  NG ILG+H 
Sbjct: 178 DEVRKIAEDRGLAVAKKKDSMEICFVPDNDYAGFIEREASDVPGCGNFVDKNGVILGKHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YT+GQR+GL +AMG P+FV  +   ++ V++G    +    +  R++NW+      
Sbjct: 238 GITHYTVGQRKGLNLAMGHPVFVTGIRPETNEVVIGDGNDVFSDHLICRDVNWMAIDGLH 297

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               +  +   KIR S    P  ++   DG V   F++ +  +  GQA VFY  +     
Sbjct: 298 G---EEKEVLAKIRYSHKGSPCIIRELPDGTVECQFKEPQRAITPGQAVVFYEDEC---- 350

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 351 VVGGGTI 357


>gi|256752949|ref|ZP_05493777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748170|gb|EEU61246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 376

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +       +G CC+   V D
Sbjct: 14  KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 74  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 133

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 134 IDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 309 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI-- 364

Query: 375 ARVLGGGIISGSKR 388
             V+GGG I    R
Sbjct: 365 --VVGGGTIERKVR 376


>gi|295425130|ref|ZP_06817835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295065189|gb|EFG56092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 375

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 190/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNKKKRVVVGMSGGVDSSVSALLLKQQGYDVIGVFMKNWDD---TDDAGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL D+ 
Sbjct: 120 DADYIAMGHYAKTVK----DENGIVHMMRPKDGNKDQTYFLSQLSQEQIKKVIFPLADLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGHVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L    +   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKQSTDPWFVVGKDLKKNELIVEQGYDSKLLYATELKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V     ++ V V F++    V  GQA V 
Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHAAENSVDVFFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGGG I  + + + 
Sbjct: 351 YNGE----ECLGGGFIDAAYQHEK 370


>gi|293374251|ref|ZP_06620579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sanguinis PC909]
 gi|292647084|gb|EFF65066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Turicibacter sanguinis PC909]
          Length = 377

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 123/391 (31%), Positives = 192/391 (49%), Gaps = 28/391 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69
             K  +V+V MSGGVDSSV A LLK  GY+V GV ++ ++S   +   G+       C  
Sbjct: 3   ANKGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQ 62

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D  DA+ V D + +  +  D+ + + + V + F   Y AG TP P + CN+ VKF   
Sbjct: 63  EVDYNDAKTVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAF 122

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L     LG D +A GHY R         +    M R +D  +DQ+YFL   TQ QL    
Sbjct: 123 LDYAMNLGCDYIAMGHYARVSH------EGEVQMLRGLDNNKDQTYFLSQLTQAQLSKTL 176

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+G+++K  VR +A ++ L  A K DS  +CF+ +  +   ++      A  G +  L 
Sbjct: 177 FPVGELQKSEVRAIAAKLDLATAKKKDSTGVCFIGERNFTQFLQNYLP--AQPGQMRTLE 234

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+++G H G++ YTIGQR+GLG+   G+  FV+  +   + ++VG     E +      +
Sbjct: 235 GEVVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALV 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
             +NW+      +  V  ++C  K R  Q  +PV +   +D+ + V   +    V  GQA
Sbjct: 295 SNVNWI----PSERFVGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
            VFY  +      LGGG I  + +     + 
Sbjct: 351 AVFYLDEV----CLGGGRIEVAYKDKEARQY 377


>gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1273]
 gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1273]
          Length = 376

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P + RVV+ MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 6   MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D   VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 63  NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G+       M R +D  +DQ+YFL   +Q+QL    FPLG
Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++KK  +R++A   GL  A K DS  ICF+ +  + D +       A  G +  L+G++ 
Sbjct: 178 ELKKPQIREMATAAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P F V  +   + + V      E L    +    + 
Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+ +   E      FKC  K R  Q    V VQ  +++ V +  ++    +  GQA VFY
Sbjct: 296 WVSNKAKET----EFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
             D      LGG  I     S    + L
Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375


>gi|307822309|ref|ZP_07652541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacter tundripaludum SV96]
 gi|307736875|gb|EFO07720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacter tundripaludum SV96]
          Length = 363

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 189/375 (50%), Gaps = 28/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL   G+ V G+ ++ +     ++    C A +D+ DA++VC
Sbjct: 3   KKVIVGMSGGVDSSVTALLLLEQGHQVTGLFMKNWEEDDGTE---QCTAMEDLADAQQVC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           D + +     ++   + + V   F S + AG TP P + CN+ VKF   L+     LGA+
Sbjct: 60  DKLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLNYAIEDLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       +      + + +D  ++QSYFL+   Q+QL    FP+G + K  
Sbjct: 120 YIATGHYARVS-----EQDCEYFLLKGLDPNKEQSYFLYTLGQKQLSRTLFPIGHLHKPE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A + G   + K DS  ICF+ + K+ + ++R        G++    GQ +G+H+G+
Sbjct: 175 IRAMADKAGFANSRKKDSTGICFIGERKFTEFLQRYLP--TQPGEMRTPQGQHIGKHHGL 232

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YT+GQR+GLG+        EP +V+  D  ++ +IVG       +  + +   +++W 
Sbjct: 233 MYYTLGQRQGLGIGGVKNAPDEPWYVLEKDLENNILIVGQGHDHPLMLHNTLEASQLDWC 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
            +      +    +C  K R  Q      ++   +D     F++ +  +  GQ+ VFY  
Sbjct: 293 SNR----PLTKTIRCTAKTRYRQADQLCSLEPIGNDRCKAVFDQPQRAITPGQSVVFYDG 348

Query: 371 DSNEARVLGGGIISG 385
           +      LGGGII  
Sbjct: 349 EI----CLGGGIIES 359


>gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus tetradius ATCC 35098]
 gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus tetradius ATCC 35098]
          Length = 367

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/381 (35%), Positives = 204/381 (53%), Gaps = 24/381 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++    +   G C A  D  D
Sbjct: 2   KDKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  VC+ I++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + 
Sbjct: 59  AVAVCNQIDIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R      +      +M R +D  +DQ+YFL   +Q+Q+ D+ FP+G++
Sbjct: 119 LGADFVATGHYARVDRSADE-----TVMLRGVDSNKDQTYFLSQLSQEQIKDVLFPVGEL 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR++A +  L  ADK DS  ICF+ +  + + +       A EG+IV   G ILGR
Sbjct: 174 EKSQVREIAHKYKLATADKKDSTGICFIGERDFNEFLSNYLP--AQEGNIVDTEGNILGR 231

Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           H G++ +TIGQRRGLG+   GE  FV   D   + +IV        L  +++Y  E + +
Sbjct: 232 HEGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFSTI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
            D      + + F C  K R  Q  +   V+   DG + V ++++   V  GQA VFY  
Sbjct: 292 SD----KEIPEEFSCTAKFRYRQADINAHVKVLGDGKIEVTYDRT-KAVTPGQAAVFYLG 346

Query: 371 DSNEARVLGGGIISGSKRSDA 391
           D      LG  II      D 
Sbjct: 347 DV----CLGSAIIDEVYNDDK 363


>gi|319898139|ref|YP_004136336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3031]
 gi|317433645|emb|CBY82030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3031]
          Length = 383

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 206/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 12  PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 68  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRR---TGDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 182

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GL +        +  +VV  D  ++ +IV        
Sbjct: 241 RTVDDEIIGRHDGLMYHTLGQRKGLDIGGLKNAGDKAWYVVDKDVENNELIVAQGHDHPR 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+      + + +  +C VK R  Q  +P  ++  DD  + V F++ +
Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380


>gi|241664140|ref|YP_002982500.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12D]
 gi|240866167|gb|ACS63828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia pickettii 12D]
          Length = 370

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 189/380 (49%), Gaps = 27/380 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKKRIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G H G
Sbjct: 174 KVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A V+G     K R  Q   P  V R  DG + + F +++  V  GQ+ V Y 
Sbjct: 292 VAG----QAPVEGTDLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGGIIS ++ +
Sbjct: 348 GEV----CLGGGIISAAEPA 363


>gi|83645146|ref|YP_433581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hahella chejuensis KCTC 2396]
 gi|123533626|sp|Q2SJL8|MNMA_HAHCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83633189|gb|ABC29156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hahella chejuensis KCTC 2396]
          Length = 364

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 26/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V +SGGVDSSV A LLK  GY+V G+ ++ ++    ++    C A  D+ DA++
Sbjct: 5   RNQRVIVGISGGVDSSVSAYLLKALGYEVEGLFMKNWDEDDGTE---YCTALSDLEDAQK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD + +  +   +   + + V   F   Y AG TP P + CN+ +KF   L   + LG 
Sbjct: 62  VCDKLGIKLHTASFSAEYWDRVFEHFLDEYRAGRTPNPDILCNKEIKFKAFLDYAQALGG 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY +   +          + +  D  ++QSYFL A   Q L    FP+G + K+
Sbjct: 122 DLIATGHYAQFSRF-----GEHTYLMKGADPSKEQSYFLHAVPGQALARTLFPVGGLLKK 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +ARE+ L   DK DS  ICF+ + K+ D +K      A  G IV   G+ +GRH G
Sbjct: 177 EVRRIARELDLITHDKKDSTGICFIGERKFSDFLKTYLP--AQPGKIVTDKGEEIGRHQG 234

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310
           ++ +TIGQR+GLG+         P +VV  D +++ ++V   G    L    +   +++W
Sbjct: 235 LMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQGGDHPRLFSAGLTASKLDW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           +            F C+ K R  Q      V   D GV V F+K +  V  GQ+ VFY  
Sbjct: 295 INGV----PAKSSFSCYAKTRYRQPDQLCRVDVQDGGVRVTFDKRQRAVTPGQSVVFYDG 350

Query: 371 DSNEARVLGGGIISGSKR 388
               AR LGGG+I    +
Sbjct: 351 ----ARCLGGGVIESVFK 364


>gi|187780204|ref|ZP_02996677.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC
           15579]
 gi|187773829|gb|EDU37631.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC
           15579]
          Length = 359

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIGVT+Q++ +  +  +++G CC+   V DARR
Sbjct: 5   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KFS  L     +G 
Sbjct: 65  VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY     +       R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 125 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K        EG+ V   G ILG H G
Sbjct: 180 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G+P++VV ++   + V++G  E L    +  ++ N++      D
Sbjct: 240 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +   +DG V V+F + +  +  GQ+ VFY  D     +
Sbjct: 296 TLKEPMEVEAKIRYSQIPSKAIITTVEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 351

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 352 IGGGIIEK 359


>gi|119476176|ref|ZP_01616528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2143]
 gi|119450803|gb|EAW32037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2143]
          Length = 372

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/390 (31%), Positives = 204/390 (52%), Gaps = 27/390 (6%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N++   K P D +V+V MSGGVDSSV A LL++ GY V G+ ++ ++    S+    C 
Sbjct: 1   MNNIAATK-PSDQKVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGSE---YCT 56

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A  D+ DA+ VCD + ++ +  ++   + + V   F + Y AG TP P V CNR +KF  
Sbjct: 57  AKDDLADAQAVCDQLKITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDVLCNREIKFKA 116

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L     LGAD +ATGHY+R           R  + +  D  +DQSYFL A +  ++   
Sbjct: 117 FLDYALVLGADYIATGHYVRKHQMGD-----RAQLIKGRDNNKDQSYFLHAVSGTEIAKT 171

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+GD++K  VR +A +  L   +K DS  ICF+ + ++ D +++     A  G I   
Sbjct: 172 LFPVGDLEKPDVRAIAEKYSLTTHNKKDSTGICFIGERRFKDFLQQYLP--AQPGMIEDT 229

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEV 300
           +G I+G H+G++ +TIGQR+GLG+         P +VV  D   + +I+        L  
Sbjct: 230 DGSIMGGHSGLMYHTIGQRQGLGIGGVSGAGDAPWYVVDKDLKRNVLIIAQGSQHHRLFK 289

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             +++ EI+W+ +    D +    +C  KIR  Q      +++   G  + F+  +  + 
Sbjct: 290 QGLFVSEIHWINN----DGITLPHRCKAKIRYRQVDQNCEIRKLSVGYEIVFDLPQRAIT 345

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSD 390
            GQ+ VFY ++      LGGG+I  +  ++
Sbjct: 346 PGQSVVFYDNEI----CLGGGVIEAAFNAN 371


>gi|325265024|ref|ZP_08131751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. D5]
 gi|324029714|gb|EGB91002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. D5]
          Length = 356

 Score =  478 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 206/365 (56%), Gaps = 15/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 3   KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVQEENGGCCGLSAVEDARRV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GA+
Sbjct: 63  AAELEIPYYVMNFKQEFKEHVIDYFVEEYRNGRTPNPCIACNRYVKWESLLHRSMAIGAE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R  + R   L +DQ+Y L+  TQ+QL     P+G+  K+ 
Sbjct: 123 YIATGHYARVVKLD----NGRFTLRRSATLAKDQTYALYNLTQEQLEHTLMPVGEYSKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL +A+K DSQDICFV  G Y   ++        EG+ V  +G++LGRH GI
Sbjct: 179 VRRIAEKIGLMVANKPDSQDICFVPDGDYASYIEETAGIRMPEGNFVSSDGRVLGRHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+A+G P FV+ +  +++ V++G  E    H +    +N++      + 
Sbjct: 239 THYTVGQRKGLGLALGYPAFVLEIRPDTNEVVIGTNEESMTHTLKADRLNFMSV----ED 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  + F KIR +       +++   D V   FE+ +  V  GQA VFY  +     VL
Sbjct: 295 LTEPLRVFTKIRYNHKGAWCIIEKTGTDEVLCTFEEPQRAVTPGQAVVFYDGE----YVL 350

Query: 379 GGGII 383
           GGG I
Sbjct: 351 GGGTI 355


>gi|268319690|ref|YP_003293346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii FI9785]
 gi|262398065|emb|CAX67079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii FI9785]
          Length = 375

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 60  KKVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +R+    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 120 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVDQGYDSKLLYATSLDASGVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +     D+ V+V+F++    V  GQA VF
Sbjct: 294 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370


>gi|187922695|ref|YP_001894337.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phytofirmans PsJN]
 gi|229486336|sp|B2SX74|MNMA_BURPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187713889|gb|ACD15113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia phytofirmans PsJN]
          Length = 383

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/392 (32%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R    ++   R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVR---QNERNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++ L  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 176 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIG 233

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W
Sbjct: 234 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHAWLLSHTLSAGNTSW 293

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367
           +      +   DGF C  K R  Q   P        G     ++F+ ++  V  GQ+ V 
Sbjct: 294 VAG----EPPADGFACGAKTRYRQADAPCTFSSAGSGEGLFELNFDAAQWAVTPGQSAVL 349

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
           Y  D      LGGGII  +     V       
Sbjct: 350 YDGDV----CLGGGIIEHAVTGQPVAREPQKA 377


>gi|241667518|ref|ZP_04755096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 359

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 206/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   QNKKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F + Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R++  V DDG  +  + + +D  +DQ+YFL+   Q+QL    FP+GD++K 
Sbjct: 119 DYIATGHYARTK--VADDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ D + +     A +G+I   NG  +G H+G
Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   +++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N+DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQSCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348

Query: 370 SDSNEARVLGGGII 383
           +D      LGGGII
Sbjct: 349 NDV----CLGGGII 358


>gi|254785838|ref|YP_003073267.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901]
 gi|237686421|gb|ACR13685.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901]
          Length = 367

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 194/382 (50%), Gaps = 28/382 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +   K     +V+V MSGGVDSSV A LL + GY V G+ ++ +N    ++    C A  
Sbjct: 1   MATSKPASQTKVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWNEDDGTE---YCTAMT 57

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA  VC  + +  +  ++  ++ + V   F   Y AG TP P + CNR +KF   L 
Sbjct: 58  DLLDAANVCQKLGIPLHTANFATQYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFLD 117

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              QLGA+ +ATGHY R+R     +   +  +C+ +D  +DQSYFL A  ++      FP
Sbjct: 118 YAEQLGANYIATGHYARTR-----NKAGQTQLCKGLDGNKDQSYFLHAVEEKAFAKTLFP 172

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR+LA    L   +K DS  ICF+ + ++ D ++      A  G IV   G+
Sbjct: 173 IGELEKPRVRELAEAHDLVTHNKKDSTGICFIGERRFKDFLQTYLP--AQPGKIVTPEGE 230

Query: 252 ILGRHNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303
           ILG H G++ YTIGQR+     G+  A  +  +V   + + + +IV   G  E L    +
Sbjct: 231 ILGDHQGLMYYTIGQRQGLGIGGIAGAHEDAWYVARKNLSDNTLIVVQGGSHELLLETAL 290

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362
               ++W+          +GF+C+ K R  Q      +Q+ + D + V F++ +  +  G
Sbjct: 291 VANGMHWIN-----QPQEEGFRCYAKTRYRQPDQRCTLQKVSGDTITVVFDEPQRAITPG 345

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ V Y  D      LGGG+I 
Sbjct: 346 QSIVLYDGDV----CLGGGVID 363


>gi|42518912|ref|NP_964842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii NCC 533]
 gi|73920127|sp|Q74JW9|MNMA_LACJO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41583198|gb|AAS08808.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii NCC 533]
          Length = 375

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 60  KKVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +R+    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 120 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIAIASGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +     D+ V+V+F++    V  GQA VF
Sbjct: 294 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370


>gi|329667542|gb|AEB93490.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii DPC 6026]
          Length = 375

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 60  KKVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +R+    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 120 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +     D+ V+V+F++    V  GQA VF
Sbjct: 294 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370


>gi|309781297|ref|ZP_07676033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia sp. 5_7_47FAA]
 gi|308919710|gb|EFP65371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia sp. 5_7_47FAA]
          Length = 370

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 188/380 (49%), Gaps = 27/380 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKKRIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  +    D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLTAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G H G
Sbjct: 174 KVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A V+G     K R  Q   P  V R  DG + + F +++  V  GQ+ V Y 
Sbjct: 292 VAG----QAPVEGTNLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGGIIS ++ +
Sbjct: 348 GEV----CLGGGIISAAEPA 363


>gi|302879502|ref|YP_003848066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gallionella capsiferriformans ES-2]
 gi|302582291|gb|ADL56302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gallionella capsiferriformans ES-2]
          Length = 366

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 27/380 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ +     S+    C + QD+ DA 
Sbjct: 2   NKNKRVVVGMSGGVDSSVTALLLKQQGYDVIGLFMKNWEDDDNSE---YCSSRQDLLDAV 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V DTI +     ++ + +++ V   F   Y +G TP P + CN  +KF   L    +LG
Sbjct: 59  SVADTIGIPIEAVNFAKEYKDRVFSAFLREYQSGRTPNPDILCNAEIKFKAFLDHAIELG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY + R   G        + +  D  +DQSYFL    Q QL    FPLG + K
Sbjct: 119 ADTIATGHYAQVREVDG-----LFQLLKATDASKDQSYFLHRLNQAQLSRAMFPLGRLLK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R +A + GL    K DS  ICF+ +  + + +          G++    G+ +GRH 
Sbjct: 174 SEIRKIAEQHGLCNFAKKDSTGICFIGERPFREFLSGYLP--TQPGEMRTPEGKRVGRHI 231

Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+  YT+GQR+GLG+       GEP FV   D  ++R+IV       +L  H +   + +
Sbjct: 232 GLSFYTLGQRQGLGIGGEKNSSGEPWFVAAKDMENNRLIVVQGHDHPALLSHTLTALDAH 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           W+       A         K R  Q   P  F +++ D   + F++ +  V  GQ+ V Y
Sbjct: 292 WISGS----APKTNHPYAAKTRYRQADAPCHFTEQSGDQCSIAFDQPQWAVTPGQSVVLY 347

Query: 369 TSDSNEARVLGGGIISGSKR 388
             +      LGG II   +R
Sbjct: 348 EGEV----CLGGAIIEAGQR 363


>gi|205815331|sp|B0K584|MNMA1_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
          Length = 364

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +       +G CC+   V D
Sbjct: 2   KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 62  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 122 IDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 179 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 297 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYDGDI-- 352

Query: 375 ARVLGGGIISGSKR 388
             V+GGG I    R
Sbjct: 353 --VVGGGTIERKVR 364


>gi|114798727|ref|YP_759370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomonas neptunium ATCC 15444]
 gi|123323559|sp|Q0C4H3|MNMA_HYPNA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114738901|gb|ABI77026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomonas neptunium ATCC 15444]
          Length = 394

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 207/386 (53%), Positives = 264/386 (68%), Gaps = 6/386 (1%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
            A R+NSL   K P + RVV AMSGGVDSSVVAA+LK +GYDVIG+TLQLY+   A ++K
Sbjct: 9   PAGRVNSLGFAKPPHETRVVAAMSGGVDSSVVAAMLKAEGYDVIGITLQLYDHGAAIEKK 68

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAGQD++DAR V D I + HYV DYE RFR  V+  FA +Y +G TP+PC+ CN+TV
Sbjct: 69  GACCAGQDIHDARNVSDAIGIPHYVLDYESRFREQVMEDFADTYLSGSTPIPCIRCNQTV 128

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF+DLL+  ++LGAD LATGHYIR       DG     + R  D  RDQSYFLFATT+ Q
Sbjct: 129 KFADLLATAKELGADCLATGHYIRR-----TDGPEGPELHRAQDASRDQSYFLFATTRAQ 183

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLG + K  VR+LA +  L +A K DSQDICFV  G Y  VV+++  G    G+
Sbjct: 184 LDFLRFPLGSLPKSEVRELAEKFALQVAAKPDSQDICFVPDGSYAKVVEKLRPGSGRGGE 243

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IVHL+G++LG+H G+I+YTIGQRRGLGVA G+PLFVV +D  + RVIVGPRE+L    + 
Sbjct: 244 IVHLDGRVLGKHEGVIHYTIGQRRGLGVATGDPLFVVKIDAPARRVIVGPREALMTRGLL 303

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           L E+NWLG G  E+A   G +  +++RS++ PVP  +   D    V F+  E GVA GQA
Sbjct: 304 LEELNWLGQGSLEEAATHGARVLIRVRSTRPPVPGRLGYEDGVPAVFFDAPEEGVARGQA 363

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390
            V Y  +    R+LGGG I+    +D
Sbjct: 364 AVLYDLE-GSTRILGGGFIARPLPAD 388


>gi|293390912|ref|ZP_06635246.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951446|gb|EFE01565.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 383

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 207/389 (53%), Gaps = 29/389 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L +  L +N    +++  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 11  PKLTAQQLAENAT-KKIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF
Sbjct: 67  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKF 126

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA+ +ATGHY+R R    +       + R +D  +DQSYFL+  ++ Q+
Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDNNKDQSYFLYTLSKIQV 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 182 GQSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        +  +VV  D  ++ +IV       +
Sbjct: 240 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHEHSA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +  ++++W+        +    +C VK R  Q  VP  ++  DD  + V F++ +
Sbjct: 300 LLSTGLIAQQLHWVD----RLPIRAPLRCTVKTRYRQTDVPCTIEPIDDETIKVIFDEPQ 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISG 385
           + V  GQ+ VFY  +      LGGGII  
Sbjct: 356 IAVTPGQSAVFYLDEI----CLGGGIIEK 380


>gi|167036708|ref|YP_001664286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115132|ref|YP_004185291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855542|gb|ABY93950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928223|gb|ADV78908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 376

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +       +G CC+   V D
Sbjct: 14  KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 74  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 133

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 134 IDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 309 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYEGDI-- 364

Query: 375 ARVLGGGIISGSKR 388
             V+GGG I    R
Sbjct: 365 --VVGGGTIERKVR 376


>gi|167040124|ref|YP_001663109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|166854364|gb|ABY92773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
          Length = 387

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 14/369 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77
           + RV + MSGGVDSSV A LLK+ G+DVIG+T++++   +A       SCC+ +   DA+
Sbjct: 27  NNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAK 86

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + + + HY  D  + F + ++  F + Y  G TP PCV CNR +KF +LL    +LG
Sbjct: 87  KVAEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 146

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KK
Sbjct: 147 AYYIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 203

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R LA E+ L +A K +SQ+ICF+    Y  ++KR        G+   ++G+ LG H 
Sbjct: 204 EEIRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHK 263

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++      
Sbjct: 264 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 319

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    K   KIR +       ++   +D V V F K +  +  GQ+ VFY  D     
Sbjct: 320 EKLEKEMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 375

Query: 377 VLGGGIISG 385
           V+GGGII  
Sbjct: 376 VVGGGIIER 384


>gi|227486632|ref|ZP_03916948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235344|gb|EEI85359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 367

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 202/380 (53%), Gaps = 24/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++    +   G C A +D  DA
Sbjct: 3   DKKDIKVIVGISGGVDSSVAALLLKEEGYDVTGIFMKNWDD---TDENGFCTAEEDFEDA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC+ I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + L
Sbjct: 60  VAVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKNL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LATGHY R      D       M R +D  +DQ+YFL   +Q+Q+ D+ FP+GD++
Sbjct: 120 GADYLATGHYARV-----DRTDGETKMLRGLDNNKDQTYFLSQLSQEQIKDVLFPVGDLQ 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A++ GL  A+K DS  ICF+ +  + + +       A  G+IV   G I+G+H
Sbjct: 175 KSEVREIAKKAGLATANKKDSTGICFIGERDFNEFLSHYLP--AQPGNIVDTEGHIMGKH 232

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           +G++ +TIGQRRGLG+   GE  FV   D   + ++V        L  +++Y  E + + 
Sbjct: 233 DGLMYHTIGQRRGLGIGGEGEAWFVYGKDLEKNELLVCQGKNNPLLFSNKLYGSEFSTIS 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D          F C  K R  Q  +   V+   DG V V ++K+   V  GQA VFY  +
Sbjct: 293 D----KECPKEFDCTAKFRYRQADIKAHVKVLGDGKVEVTYDKT-KAVTPGQAAVFYDGE 347

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 LG  II      D 
Sbjct: 348 V----CLGSAIIDEVYMDDR 363


>gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189040504|sp|B0TW32|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 359

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 206/374 (55%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A Q + DA+ 
Sbjct: 2   QNNKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQHIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F + Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+++   DDG  +  + + +D  +DQ+YFL+   Q+QL    FP+GD++K 
Sbjct: 119 DYIATGHYARTKVI--DDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ D + +     A +G+I   NG  +G H+G
Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   +++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q   P  V+ N+DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQPCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348

Query: 370 SDSNEARVLGGGII 383
           +D      LGGGII
Sbjct: 349 NDV----CLGGGII 358


>gi|145631293|ref|ZP_01787065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
 gi|144983078|gb|EDJ90578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
          Length = 362

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 203/376 (53%), Gaps = 28/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     C A  D+ DA+ 
Sbjct: 2   RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LG
Sbjct: 59  VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+    FP+G++KK
Sbjct: 119 AHYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+
Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHD 231

Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        L    +   +++
Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSRGLIASQLH 291

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           W+      + + +  +C VK R  Q  +P  ++  +D+ + V F++ +  V  GQ+ VFY
Sbjct: 292 WVD----REPIRESLRCTVKTRYRQQDIPCVIESIDDETIRVIFDEPQSAVTPGQSAVFY 347

Query: 369 TSDSNEARVLGGGIIS 384
             +      LGGGII+
Sbjct: 348 LGEV----CLGGGIIA 359


>gi|227889771|ref|ZP_04007576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227849635|gb|EEJ59721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 383

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 192/384 (50%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++    +   G C A +D  D 
Sbjct: 11  DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L     L
Sbjct: 68  KKVADEIGIPYYSINFEKDYWDRVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 127

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY  +R+    D      M RP D  +DQ+YFL   +Q QL  + FPL ++ 
Sbjct: 128 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLNQLSQDQLKKVIFPLANLT 183

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 184 KPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 241

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 242 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 301

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367
           +       D      KC  K R  Q  V V +     D+ V+V+F++    V  GQA VF
Sbjct: 302 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 358

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGG  I  + +++ 
Sbjct: 359 YNGE----ECLGGATIDRAYQNEK 378


>gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 364

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 199/371 (53%), Gaps = 27/371 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            ++V MSGGVDSSV A LL + GY V G+ ++ +         G C A +D+ DA+ VC+
Sbjct: 6   HIIVGMSGGVDSSVAALLLIQAGYRVEGLFMKNWEEDD---EPGYCAAAEDLADAKAVCE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   RQLGAD +
Sbjct: 63  VLEIPLHKVNFSADYWHRVFSHFLDEYQAGRTPNPDILCNKEIKFRAFLDYARQLGADGI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    +G DG+    +    D  +DQ+YFL+   Q+QL    FP+G+++K  VR
Sbjct: 123 ATGHYAR----IGRDGES-YTLLAGRDANKDQTYFLYTLGQEQLSKSLFPIGELEKPRVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           DLAR  GL +  K DS  ICF+ + ++ D ++      A  G+IV   G  LG H G++ 
Sbjct: 178 DLARAHGLPVFAKKDSTGICFIGERRFRDFLQTYLP--ARPGEIVDPEGNRLGEHQGLMY 235

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+         P +VV  D   +R+IV        +    +  ++++W+  
Sbjct: 236 YTLGQRQGLGIGGVHDAGEAPWYVVDKDMAHNRLIVAQGHDHPLMHHRGLEAQDLHWVSG 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
               +A  + F C  +IR  Q      V+ + DG V V F++++  +A GQ+ VFY  D 
Sbjct: 296 ----EAPREAFSCRARIRHRQPLQACRVEPHADGRVRVLFDEAQRAIAPGQSVVFYQED- 350

Query: 373 NEARVLGGGII 383
              R LGGGII
Sbjct: 351 ---RCLGGGII 358


>gi|187930035|ref|YP_001900522.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12J]
 gi|229486417|sp|B2UC85|MNMA_RALPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187726925|gb|ACD28090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia pickettii 12J]
          Length = 370

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 187/380 (49%), Gaps = 27/380 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKKRIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I   +G+ +G H G
Sbjct: 174 KVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGTGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  +G     K R  Q   P  V R   G + + F +++  V  GQ+ V Y 
Sbjct: 292 VAGH----APAEGTHLGAKTRYRQADAPCTVARAAGGALTLTFSEAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSKRS 389
            +      LGGGIIS ++ +
Sbjct: 348 GEV----CLGGGIISAAEPA 363


>gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Halomonas elongata DSM 2581]
 gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halomonas elongata DSM 2581]
          Length = 370

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 189/387 (48%), Gaps = 27/387 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  + +V+V MSGGVDSSV A LL   G+DV G+ ++ ++    ++    C A +D+ DA
Sbjct: 2   SASNGKVIVGMSGGVDSSVSAQLLLEQGFDVEGLFMKNWDEDDGTE---YCTAKEDLADA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC  + +  +  ++   + + V   F + Y AG TP P + CNR +KF   L     L
Sbjct: 59  EAVCAKLGIHLHTANFAAEYWDNVFEHFLAEYQAGRTPNPDILCNREIKFKVFLEYAEML 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY+R     G        + + +D  +DQSYFL A  +  +    FP+G+++
Sbjct: 119 GADWIATGHYVRRAERDG-----HARLLKGLDANKDQSYFLHAVPEAAIARSLFPVGELE 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VRD+A   GL  A K DS  ICF+ + ++ D +++     A  G I   +G ++G H
Sbjct: 174 KSEVRDIAERHGLATARKKDSTGICFIGERRFRDFLRQYLP--AQPGTIATPDGDVIGEH 231

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSS--RVIVG-PRESLEVHRIYLREI 308
            G++ YT+GQR+GLG+         P +V   D   +   V+ G     L    +    +
Sbjct: 232 MGLMYYTLGQRQGLGIGGLANYSDAPWYVAGKDLERNVLTVVQGKHHPLLYTDSLATEAM 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           +W+             +   K R  QD VP  ++   DDGV V F+  +  V  GQ+ V 
Sbjct: 292 DWVAGT----PPAREGRYHAKTRYRQDDVPCTMRVAEDDGVEVHFDDPQRAVTPGQSLVL 347

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394
           Y  D      LGGG+I  +  +     
Sbjct: 348 YDGDI----CLGGGVIRATWNATEAAA 370


>gi|89094503|ref|ZP_01167442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanospirillum sp. MED92]
 gi|89081239|gb|EAR60472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanospirillum sp. MED92]
          Length = 371

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 196/384 (51%), Gaps = 27/384 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + +    +V+V MSGGVDSSV A LL + GY V G+ ++ ++    ++    C A +D+ 
Sbjct: 6   NTDNSSAKVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTE---YCTAKEDLA 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    
Sbjct: 63  DAQAVCDKLGIHLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYAV 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LGAD +ATGHY+R       D   +  + + +D  +DQSYFL    Q ++    FP+G+
Sbjct: 123 ELGADFIATGHYVRRG-----DRDGKTRLLKGLDNNKDQSYFLHQVGQLEIEKTLFPVGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K +VR LA E  L   +K DS  ICF+ + ++ D +K+     A  G I   NG ++G
Sbjct: 178 LEKPAVRKLAEEHDLVTHNKKDSTGICFIGERRFSDFLKQYLP--AQPGKIETPNGDVIG 235

Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYLR 306
            H G++ YTIGQR+GL +        EP FV   D + + +  + G   + L    +   
Sbjct: 236 EHAGLMYYTIGQRQGLQIGGLKDYPEEPWFVGAKDLDRNVLIAVQGKQNDLLFTDWLTAD 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           E+ W+      +     ++C  K+R  Q      ++R+ + G  + F + +  +  GQ+ 
Sbjct: 296 ELFWING----EEPQLPYQCTAKVRYRQSDQGCIIERHGESGYRIVFNEPQRAITPGQSV 351

Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389
           V Y  D      LGGG+I  + ++
Sbjct: 352 VIYQDDI----CLGGGVIEHTGKN 371


>gi|88703376|ref|ZP_01101092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Congregibacter litoralis KT71]
 gi|88702090|gb|EAQ99193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Congregibacter litoralis KT71]
          Length = 372

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 186/379 (49%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +    K+  +V+V MSGGVDSSV A +L   GYDV G+ ++ ++    ++    C A  D
Sbjct: 1   MTAPAKNTEKVIVGMSGGVDSSVAALILLEQGYDVEGLFMKNWDEDDGTE---YCTAKVD 57

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V D + ++ +  ++   + + V   F   Y AG TP P + CNR +KF   L  
Sbjct: 58  YADAQAVADKLGITLHAANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFRAFLDY 117

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LGAD +ATGHY R  +  G     R  +C+ +D  +DQSYFL A    +L    FPL
Sbjct: 118 ALELGADRIATGHYARRGMRHG-----RPALCKGLDNNKDQSYFLHAVGHAELSKTLFPL 172

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR LA   GL   DK DS  ICF+ + ++ D +++     A  G I  L G  
Sbjct: 173 GEIEKPEVRALAERAGLRTHDKKDSTGICFIGERRFKDFLQQYLP--AQPGIIKTLEGDT 230

Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSR--VIVG-PRESLEVHRIY 304
           +G H+G++ +TIGQR+GLG+         P +V   D  ++   V+ G    +L    ++
Sbjct: 231 IGEHSGLMYHTIGQRQGLGIGGLARHNEAPWYVAGKDLANNVLLVVQGNDHPALFSQELW 290

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
              + W+       A      C  K+R  Q      V  +     ++F   +  +  GQ+
Sbjct: 291 TDTLFWIAG----QAPQFPLHCAAKVRYRQADQKCTVFEDGGRYRINFSAPQRAITPGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            V Y  +      LGGG+I
Sbjct: 347 VVLYDGNI----CLGGGVI 361


>gi|262376077|ref|ZP_06069308.1| tRNA methyl transferase [Acinetobacter lwoffii SH145]
 gi|262309171|gb|EEY90303.1| tRNA methyl transferase [Acinetobacter lwoffii SH145]
          Length = 379

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 200/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  CDKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVNLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYCRRGETMTNSRGEEYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  +G+ +G H+G
Sbjct: 179 QVRKIAEELDLVTAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLEDGKEVGDHHG 236

Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR      G+        FV++ D   +R++VG       ++   ++   I+W
Sbjct: 237 LMYYTLGQRGGIGIGGMKGVAEGAWFVLHKDIEGNRLVVGQGHEHPLMQSTTLWSEAIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVF 367
           +     +D    GF+C  K R  Q      V ++    +GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QDIPETGFRCTAKTRYRQTDQACTVYQDSESPNGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSGEV----CLGGGVIHHT 369


>gi|28211134|ref|NP_782078.1| tRNA-specific 2-thiouridylase MnmA [Clostridium tetani E88]
 gi|75542384|sp|Q894S7|MNMA2_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|28203574|gb|AAO36015.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Clostridium tetani E88]
          Length = 358

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 209/367 (56%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIG T+Q++   K   +R+G CC+   V DARR
Sbjct: 5   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQDDKEFIEREGGCCSLSAVADARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +  YV ++++ F+  VI  F   Y  G TP PCV CN+ +KFS  L     LG 
Sbjct: 65  VANKIGIPFYVMNFKDAFKKNVIDYFVDEYMEGRTPNPCVACNKFIKFSSFLDKAMTLGI 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      + +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KK 
Sbjct: 125 DYVATGHYA-----IIEKQNNRYIVRKSEDDKKDQTYALYNLTQFQLERTLMPCGRYKKS 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+++GL + +K DSQ+ICF+    +   +K        +G+ V  +G +LG H G
Sbjct: 180 EIREIAKKIGLRVHNKKDSQEICFIPDNDHGKYIKNRFPSKVRQGNFVDKSGNVLGTHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GL +A+G+P++VV ++   + V++G  + L    +  +++N++      D
Sbjct: 240 IVYYTIGQRKGLDIALGKPMYVVDINPFRNEVVLGNLDDLLNTELIAKDVNYI----PFD 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR SQ P    +    +D V V+F + +  +  GQ+ VFY  D     +
Sbjct: 296 NLKEPMEVEAKIRYSQIPSKAVITPMENDKVKVNFTEKQRAITKGQSVVFYKGD----LL 351

Query: 378 LGGGIIS 384
           +GGGII 
Sbjct: 352 IGGGIIE 358


>gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus helveticus DSM 20075]
 gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus helveticus DSM 20075]
 gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
           5463]
          Length = 375

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 189/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V    +D+   V F++    V  GQA V 
Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGGG I  + + D 
Sbjct: 351 YQGE----ECLGGGNIDAAYQEDK 370


>gi|312869501|ref|ZP_07729656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus oris PB013-T2-3]
 gi|311094948|gb|EFQ53237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus oris PB013-T2-3]
          Length = 377

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 136/386 (35%), Positives = 198/386 (51%), Gaps = 25/386 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++    +   G C A +D  D  +V 
Sbjct: 7   TRVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGAD 
Sbjct: 64  AKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY   +     D   R  + R  D  +DQ+YFL      QL  + FPL +  K  +
Sbjct: 124 VATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLANYTKPQI 179

Query: 201 RDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R++A+E GL  A+K DS  ICF+ + G + + + +     A  G++  ++G+++G+H G+
Sbjct: 180 REIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQHMGL 237

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           + YTIGQRRGLG+       EP FV+  D   + + VG     E L    +   +I+W+ 
Sbjct: 238 MYYTIGQRRGLGLGGNKESNEPWFVIGKDIEKNVLYVGQGYHNEHLYATHLEASDIHWVD 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
           D +        F C  K R  Q  V V V+  DD   V V F+     +  GQA VFY  
Sbjct: 298 DVVSRYG--REFHCTAKFRYRQKDVGVTVRIADDDQMVTVTFDDPARAITPGQAVVFYDG 355

Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396
                  LG  II  +  +D   + +
Sbjct: 356 ----QECLGSAIIDRAYNADRQLQYV 377


>gi|319775956|ref|YP_004138444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3047]
 gi|317450547|emb|CBY86764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3047]
          Length = 418

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L  N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 47  PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + +Q+
Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQV 217

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G ++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 218 GQSLFPVGKIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 276 RTVDNEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVKNNELIVAQGHDHPR 335

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+        + +  +C VK R  Q  +   ++  DD  + V F++ +
Sbjct: 336 LFSKGLIASQLHWVD----RQPIRELLRCTVKTRYRQQDISCAIEPIDDETIRVIFDEPQ 391

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII+
Sbjct: 392 SAVTPGQSAVFYLGEV----CLGGGIIA 415


>gi|331082285|ref|ZP_08331411.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400771|gb|EGG80372.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 204/368 (55%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
              +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++        +  G CC    V DA
Sbjct: 2   SGKKVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   +++ +YV ++ + F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVAQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  +   +  ++DQ+Y L+  TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARVEQLP----NGRYAIRNSVTAKKDQTYALYNLTQEQLSRTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE +R +A+E GL +A K DSQ+ICFV    Y   ++        EG+ V  +G ++G+H
Sbjct: 178 KEEIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GL ++MG P+FV  +  +++ V++G  E L V  +    +N++     
Sbjct: 238 KGIIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAIDHL 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E    +G +   KIR +       ++   +G V V F + +  V  GQA VFY  +    
Sbjct: 298 E----EGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFREPQRAVTPGQAVVFYDGE---- 349

Query: 376 RVLGGGII 383
            V GGGII
Sbjct: 350 YVAGGGII 357


>gi|301154862|emb|CBW14325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae T3T1]
          Length = 382

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L++  L +N    +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 11  PKLSAEQLAENAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 67  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 126

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA+ +ATGHY+R R         +  + R +D  +DQSYFL+  ++ Q+
Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRG-----ADNQAELLRGLDSNKDQSYFLYTLSKHQV 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI
Sbjct: 182 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH G++ +T+GQR+GLG+        E  +VV  D  ++ +IV        
Sbjct: 240 RTVDGEIIGRHEGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSE 356
           L    +  ++++W+      + V + F+C VK R  Q  +   V+  +DD + V F++ +
Sbjct: 300 LFSKGLIAKQLHWVN----REPVREAFRCTVKTRYRQTDIACLVEPIDDDCIRVIFDEPQ 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
             V  GQ+ VFY  +      LGGGII 
Sbjct: 356 AAVTPGQSAVFYLDEV----CLGGGIIE 379


>gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934142|ref|ZP_06339420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
 gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301756|gb|EFA94022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 190/393 (48%), Gaps = 29/393 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ +   V   F S Y  G TP P + CN  +KF   L     L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G H
Sbjct: 176 KPQVREIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 SGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V     D    V F++    V  GQA V 
Sbjct: 294 FYTGNPDHD---VEFDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +      LGGG I  + +    EE  L ++
Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC
           4571]
 gi|205816860|sp|A8YUQ2|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571]
          Length = 375

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 189/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V    +D+   V F++    V  GQA V 
Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGGG I  + + D 
Sbjct: 351 YQGE----ECLGGGNIDAAYQEDK 370


>gi|205815324|sp|B0KC14|MNMA1_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
          Length = 364

 Score =  476 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            K+ RVVV MSGGVDSSV A LLK  G+DVIGVT+Q++  +       +G CC+   V D
Sbjct: 2   KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + I + +YV ++++ F+  VI  F   Y  G TP PC+ CN+ +KF +LL     
Sbjct: 62  ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + A  +ATGHY        D+ + R ++ + +D  +DQ+Y L+  TQ QL  + FPLG  
Sbjct: 122 IDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK+ VR+LA+ +GL +A K DSQ+ICFV    Y   ++         G+     G+ LG 
Sbjct: 179 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YTIGQR+GLG+++G+PL+VV +D  ++ V++G  + +    +     N++    
Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +    +   KIR +       ++  +DG V+V F+  +  +  GQ+ VFY  D   
Sbjct: 297 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYEGDI-- 352

Query: 375 ARVLGGGIISGSKR 388
             V+GGG I    R
Sbjct: 353 --VVGGGTIERKVR 364


>gi|205822346|sp|B1ZGZ6|MNMA_METPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 385

 Score =  476 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/377 (54%), Positives = 269/377 (71%), Gaps = 8/377 (2%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+   A+ RKG+CC
Sbjct: 1   MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AG+D++DAR V +T+ + HYV DYE+RFR +VI  FA SY +GETP+PCV+CNR+VKF D
Sbjct: 61  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL + R LGA+ LATGHY+ SR       +  R + R +D  RDQSYFL+ATT +QL  L
Sbjct: 121 LLGMARDLGAEALATGHYVASRAQP----EGGRALYRALDPARDQSYFLYATTPEQLAFL 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG+  K+  R LARE+GL +ADK+DSQDICFV QG Y DV+ ++    A  G+IV L
Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGEIVDL 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+  ++RV+VGPR +L   RI L ++
Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
           NWLG    +   +      V++RS+++P P  +  N  +  + V+    E GV+ GQACV
Sbjct: 297 NWLGSRAPDG--LADLPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPGQACV 354

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D   A+VLGGG I
Sbjct: 355 IYADDGPRAQVLGGGTI 371


>gi|255283411|ref|ZP_05347966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bryantella formatexigens DSM 14469]
 gi|255266059|gb|EET59264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bryantella formatexigens DSM 14469]
          Length = 357

 Score =  476 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 203/367 (55%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDV+GVT+Q++   +   +   G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAWLLKEQGYDVVGVTMQIWQDEEEQTQEENGGCCGLSAVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV  T+ + +YV +++  F+  V+  FA  Y  G TP PC+ CNR VK+  LL  +  +G
Sbjct: 62  RVAQTLEIPYYVMNFKAEFKEKVMDYFAQEYLCGRTPNPCIACNRYVKWEALLQRSLAIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R R   G     R  +CR     +DQ+Y L+  TQ+QL     P+G+  K
Sbjct: 122 ADYIATGHYARIRQLPG----GRYTICRSATAAKDQTYALYNLTQEQLAHTLMPVGEYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R +A ++GL +A+K DSQ+ICFV    Y   ++         G+ V  +G +LG+H 
Sbjct: 178 EEIRGIAEKIGLRVANKPDSQEICFVPDDDYASFIEEYTGREMPAGNFVTADGTVLGQHR 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YTIGQRRGL + MG  +FV  +   ++ V++G  E L   R+   ++N++      
Sbjct: 238 GITHYTIGQRRGLQLPMGHRVFVTDIRPETNEVVIGENEELFKRRLLANKLNFMSV---- 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +    +   KIR +    P  ++    D V   F++ +  +  GQA VFY  ++    
Sbjct: 294 PEIDGDTRVTAKIRYNHRGAPATIRMAGPDMVECIFDEPQRAMTPGQAVVFYDGEN---- 349

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 350 VLGGGTI 356


>gi|330815569|ref|YP_004359274.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3]
 gi|327367962|gb|AEA59318.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3]
          Length = 390

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 178/381 (46%), Gaps = 32/381 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     + + R  + +  D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 ETIATGHYARVR-----EREGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +    G+ +G H G
Sbjct: 174 RVREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKRVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHEHPWLLSRELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQA 364
           +      +   DGF C  K R  Q   P         +  +    + F+  +  V  GQ+
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAPCSFARAKAGEAGEARFSLGFDTPQWAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            V Y  +      LGGGII  
Sbjct: 348 AVLYDGEI----CLGGGIIES 364


>gi|220931733|ref|YP_002508641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothermothrix orenii H 168]
 gi|259495830|sp|B8CWH7|MNMA_HALOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219993043|gb|ACL69646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothermothrix orenii H 168]
          Length = 358

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 140/365 (38%), Positives = 208/365 (56%), Gaps = 14/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           RV+VAMSGGVDSSV AALLK  GY+VIG T++++ +  +    +G CC+   + DARRV 
Sbjct: 3   RVLVAMSGGVDSSVTAALLKEQGYEVIGGTMEIFPDYEQPPLDEGGCCSLSSIEDARRVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I + HY F+ ++ F   VI  F + Y    TP PCV CN  +KF  LL    +L AD 
Sbjct: 63  HHIGIRHYTFNLKKVFEEEVINNFVNEYKNARTPNPCVVCNNEIKFRSLLKKALELDADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY      V  +   + ++ +  D+++DQ+Y L+  TQ QL     PLG+  K+ V
Sbjct: 123 IATGHYA----IVEHNVNGKHLLKKAKDVDKDQTYMLYGLTQFQLSHTLMPLGNYTKQEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A++ G  I +K +SQ+ICFV    Y   +     G+   G ++  +G ILG+H G+ 
Sbjct: 179 RQMAKDFGFRIHNKPESQEICFVPDNNYTRFLDENYPGLGKPGPVMDTDGNILGKHKGLH 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGLG+++G P++VV LD+  + VI+GP E +    +   ++NW+      D +
Sbjct: 239 HYTIGQRRGLGISLGYPVYVVKLDREKNAVIIGPEEEVYSKSLIANKVNWISI----DKL 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  K   +IR +       +   ND+ V V F+K +  V  GQ+ VFY        V+G
Sbjct: 295 TEPIKVTARIRYNSPESHAKIYPVNDNEVKVVFDKKQRAVTPGQSVVFYDGKV----VVG 350

Query: 380 GGIIS 384
           GGII 
Sbjct: 351 GGIIK 355


>gi|255659674|ref|ZP_05405083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mitsuokella multacida DSM 20544]
 gi|260848239|gb|EEX68246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mitsuokella multacida DSM 20544]
          Length = 366

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 153/376 (40%), Positives = 207/376 (55%), Gaps = 14/376 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARR 78
             +VVVAMSGGVDSS+ AALLK  GY+ IGVT++L    R   +    CC+   V DARR
Sbjct: 3   KKKVVVAMSGGVDSSLTAALLKEQGYEAIGVTMRLSEESRDFDENDRGCCSLSSVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I + HY  +++E F+  VI  F + YA G TP PC+ CNR VKF  LL    +LGA
Sbjct: 63  VAEIIGIPHYTMNFKEMFQEKVIDYFLADYAKGWTPNPCIACNRYVKFEGLLQKAMELGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R    +  D   R ++ + +D  +DQSY L+   QQ L     PLGD  K 
Sbjct: 123 DYVATGHYAR----IAQDESGRYVLKKGIDTHKDQSYALYHLNQQSLAHFLMPLGDYTKV 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R++A    L +A K DSQ+ICFV    Y   ++  N      GDIV   G +LG H G
Sbjct: 179 ETREMAERYKLPVAHKPDSQEICFVPHDDYKAYLRAKNPSCLHPGDIVDKEGHVLGHHEG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YTIGQR+GLG+A  EPL+VV LD   +RV+VG    +    +   ++NW+      D
Sbjct: 239 VPLYTIGQRKGLGIAHPEPLYVVDLDMAHNRVVVGGAGDVFSDGLIAGDLNWIAI----D 294

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A+    +   K+R  +      V+    G V V F + +  V  GQ+ VFY  D+    V
Sbjct: 295 ALEAPIEVTAKVRYGRREGRAHVEPLAGGKVRVHFAEPQRAVTPGQSVVFYAGDT----V 350

Query: 378 LGGGIISGSKRSDAVE 393
           +GGGII  + R +A E
Sbjct: 351 VGGGIIEKAIRKEAAE 366


>gi|225174584|ref|ZP_03728582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169711|gb|EEG78507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 366

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 146/376 (38%), Positives = 209/376 (55%), Gaps = 16/376 (4%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDV 73
            K+ RV+VAMSGGVDSS+ AALLK  GY+ IGVT++L+ S             CC+   V
Sbjct: 2   KKNNRVLVAMSGGVDSSLCAALLKEQGYEAIGVTMRLWVSPDFEDEAKHSGRGCCSLSAV 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DARRV D + +  YV +++E FR  V+  F   Y  G TP PC+ CNR +KF  LL   
Sbjct: 62  DDARRVADKMEMPFYVLNFKESFRTQVVDYFVDEYRRGRTPNPCIACNRYLKFDLLLKKA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L A  +ATGHY R      D+   R  + +  D  +DQ+Y L+  TQ+QL    FPLG
Sbjct: 122 FELEAWYVATGHYARVEY---DESLERFRLKKAADARKDQTYTLYNLTQKQLAHTLFPLG 178

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K  VR++A + GL +ADK DSQ+ICF+    Y   ++      +  G I+ L+G  L
Sbjct: 179 GFLKSEVREMAAKYGLAVADKPDSQEICFIPDDDYKRFLREETDVESKPGPILDLDGNRL 238

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G++NYT+GQR+GLG+A+G P+FVV LD  ++ +IVG    +    +   ++N++  
Sbjct: 239 GTHQGLVNYTVGQRKGLGIAVGRPIFVVELDVENNTLIVGDDRDVFFRALVADDLNFI-- 296

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
               D + +  +   KIR     VP  +     G   ++F++ E  V  GQ+ VFY  D 
Sbjct: 297 --LIDELKEPRRVMAKIRYHAKEVPALLSPLPHGQAKLEFDEPERAVTPGQSVVFYEGDD 354

Query: 373 NEARVLGGGIISGSKR 388
               V+GGGII  + R
Sbjct: 355 ----VVGGGIIQQAIR 366


>gi|167037462|ref|YP_001665040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914208|ref|ZP_07131524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307724557|ref|YP_003904308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|320115876|ref|YP_004186035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|205810696|sp|B0K991|MNMA2_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|205815314|sp|B0K0P8|MNMA2_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|166856296|gb|ABY94704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889143|gb|EFK84289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307581618|gb|ADN55017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|319928967|gb|ADV79652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 364

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 14/369 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77
           + RV + MSGGVDSSV A LLK+ G+DVIG+T++++   +A       SCC+ +   DA+
Sbjct: 4   NNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + + + HY  D  + F + ++  F + Y  G TP PCV CNR +KF +LL    +LG
Sbjct: 64  KVAEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KK
Sbjct: 124 AYYIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R LA E+ L +A K +SQ+ICF+    Y  ++KR        G+   ++G+ LG H 
Sbjct: 181 EEIRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHK 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++      
Sbjct: 241 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    K   KIR +       ++   +D V V F K +  +  GQ+ VFY  D     
Sbjct: 297 EKLEKEMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 352

Query: 377 VLGGGIISG 385
           V+GGGII  
Sbjct: 353 VVGGGIIER 361


>gi|260913335|ref|ZP_05919816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632566|gb|EEX50736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 209/392 (53%), Gaps = 29/392 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             L++  L +N K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 11  PPLSTAQLSENSK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF
Sbjct: 67  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKF 126

Query: 127 SDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R     G+       + R +D  +DQSYFL+  ++ Q+
Sbjct: 127 KAFLEYAAEDLGADYIATGHYVRRSEKDGEC-----QLLRGLDNNKDQSYFLYTLSKDQV 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 182 AQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGEI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES--- 297
             ++G ++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V        
Sbjct: 240 KTVDGVVVGRHDGLMYHTLGQRKGLGIGGVKGMSEDPFYVVEKDLANNVLVVAQGHDNSA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+   +    V    +C VK R  Q+ +P  +Q  DD  + V F++++
Sbjct: 300 LLSSGLIASQLHWVDRKVIRKPV----RCTVKTRYRQEDIPCEIQPIDDETIRVVFDEAQ 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           + V  GQ+ VFY  +      LGGG+I    +
Sbjct: 356 IAVTPGQSAVFYQGEV----CLGGGVIETQIK 383


>gi|78222093|ref|YP_383840.1| tRNA-specific 2-thiouridylase MnmA [Geobacter metallireducens
           GS-15]
 gi|123572471|sp|Q39XA9|MNMA_GEOMG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78193348|gb|ABB31115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter metallireducens GS-15]
          Length = 368

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 158/371 (42%), Positives = 210/371 (56%), Gaps = 18/371 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN----SRKASKRKGSCCAGQDVYDA 76
            R+VVAMSGGVDSSV AALLK +G++VIG+++Q+++    S    ++  +CC+  D++DA
Sbjct: 7   KRIVVAMSGGVDSSVTAALLKEEGHEVIGISMQVWDYSKFSAPEGEKFDTCCSLDDIHDA 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + I +  YV ++EE F+  VI  F   Y  G TP PCV CN+ VKF  LL   R+L
Sbjct: 67  RRVAEQIGIPFYVVNFEEEFQRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLRKAREL 126

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD+LATGHY R    +   G     + R  D  +DQSYFLF  TQ+QL  + FPLG M 
Sbjct: 127 GADLLATGHYAR----IERGGDGLFHLLRGDDPGKDQSYFLFTLTQEQLARVTFPLGGMT 182

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA   GL +A+K +SQ+ICFV    Y   ++       L G+IV   G +LG H
Sbjct: 183 KPEVRQLATRFGLRVAEKGESQEICFVPDNDYVRFLEDERGAGQLVGEIVDRAGTVLGHH 242

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YT+GQRRGLG+A   PL+VV +D    +VIVGP+E L    +   ++ W+     
Sbjct: 243 EGTYRYTVGQRRGLGIAHPHPLYVVGVDAERRQVIVGPKEELLAPGLVATDVTWV----- 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                +  +   KIR    PVP  V     +   V F + E  V  GQA VFY  D    
Sbjct: 298 IALATETLEAACKIRYRHHPVPCTVTVLAGNRAQVRFREPEKSVTPGQAVVFYHGD---- 353

Query: 376 RVLGGGIISGS 386
            VLGGG I  +
Sbjct: 354 EVLGGGWIDAA 364


>gi|227529026|ref|ZP_03959075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351038|gb|EEJ41329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 377

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 134/390 (34%), Positives = 198/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DKSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVATKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIDYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D   R  + R  D  +DQ+YFL     QQL  + FPL +  
Sbjct: 120 GADYVATGHYADLKR----DADGRMHLMRAKDQNKDQTYFLSQLDYQQLDKVLFPLANYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R +A E GL  A K DS  ICF+ + G + + + +     A  G++  ++G+++G+
Sbjct: 176 KPEIRQIAEEAGLATAKKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQ 233

Query: 256 HNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQRRGLG+   +    P FV+  D   + + VG     E L    +   +I
Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKKSNAPWFVIGKDIKKNVLYVGQGYENEHLYATHLEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q  V V V  ++D   V V F+     +  GQA V
Sbjct: 294 HWVDDAVSRYG--HDFHCTAKFRYRQKDVGVTVHISEDEQMVTVTFDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  +   D + + +
Sbjct: 352 FYDGE----ECLGSAIIDRAYNHDHLCQYV 377


>gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii JV-V16]
 gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii JV-V16]
          Length = 375

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 190/393 (48%), Gaps = 29/393 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ +   V   F S Y  G TP P + CN  +KF   L     L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G H
Sbjct: 176 KPQVREIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           +G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 SGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V     D    V F++    V  GQA V 
Sbjct: 294 FYTGNPDHD---VEFDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +      LGGG I  + +    EE  L ++
Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|148543839|ref|YP_001271209.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri DSM
           20016]
 gi|184153240|ref|YP_001841581.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri JCM 1112]
 gi|227364743|ref|ZP_03848792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM2-3]
 gi|325682630|ref|ZP_08162147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM4-1A]
 gi|166991123|sp|A5VJ48|MNMA_LACRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229486414|sp|B2G6L9|MNMA_LACRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148530873|gb|ABQ82872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri DSM 20016]
 gi|183224584|dbj|BAG25101.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Lactobacillus reuteri JCM 1112]
 gi|227070202|gb|EEI08576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM2-3]
 gi|324978469|gb|EGC15419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM4-1A]
          Length = 377

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 197/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D   R  + R  D  +DQ+YFL     +QL  + FPL    
Sbjct: 120 GADYVATGHYADVKR----DENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R +A E GL  ADK DS  ICF+ + G + + + +     A  G++  L+G+++G+
Sbjct: 176 KPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQ 233

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQRRGLG+       EP FV+  D   + + VG       L    +   +I
Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q  V V V  +DD   V V+F+     +  GQA V
Sbjct: 294 HWVDDVVSRYG--RDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  +   D   + +
Sbjct: 352 FYDGE----ECLGSAIIDRAYSHDRQLQYV 377


>gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 375

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 192/387 (49%), Gaps = 25/387 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y AG TP P + CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD LA GHY ++ +    D      M RP D  +DQ+YFL   TQ+Q+  + FPL D+ 
Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G+H
Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGQH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   +++IV        L   R+    + 
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +      ED     FK   K R  Q  V V V          V F++    V  GQA V 
Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394
           Y  +      LGGG I  + + D   +
Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373


>gi|302392703|ref|YP_003828523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetohalobium arabaticum DSM 5501]
 gi|302204780|gb|ADL13458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetohalobium arabaticum DSM 5501]
          Length = 361

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/375 (36%), Positives = 217/375 (57%), Gaps = 18/375 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAG 70
           L LD+N    RVVVAMSGGVDSS+ AA+LK++GY+VIG+T++++ S +     +  CC+ 
Sbjct: 2   LGLDQN----RVVVAMSGGVDSSLAAAILKKEGYEVIGITMKIWPSEETPVDNENGCCSL 57

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             V DARRV   +++  YV ++E+ F+  VI  F + YA   TP PCV CN+ +KF+  L
Sbjct: 58  SAVNDARRVAYKLDIPFYVINFEDLFKRTVIQNFKNEYAQARTPNPCVVCNKVIKFNAFL 117

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  ++LGA  +ATGHY   ++   +DG  R ++ +    ++DQ+Y L+  TQ+QL    F
Sbjct: 118 NKAKELGAYYMATGHYA--KIIQNEDG--RYLLKKSAAPDKDQTYMLYNLTQEQLKHTIF 173

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PL +  K+  R+LA++  L + DK +SQ+ICF+    Y   ++  +  I   G I+ + G
Sbjct: 174 PLAEYTKQQTRELAKDYDLKVYDKPESQEICFIPDDDYRRFLQENHPEIIEPGPILDVEG 233

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG H G+  YTIGQRRGLG+   + L+VV +D   + +IVG  E +    + + EINW
Sbjct: 234 NKLGEHKGLPFYTIGQRRGLGLENNKKLYVVDMDPERNALIVGDNEDVFAKELIVEEINW 293

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYT 369
           +      + + +  +   KIR +       +   ++ V  V F + +  +  GQ+ VFY 
Sbjct: 294 ISI----EKLTEPKEVQAKIRYNSPAAEATIYPVEENVAKVVFAEPQRAITPGQSAVFY- 348

Query: 370 SDSNEARVLGGGIIS 384
              N+  V+GGG+I 
Sbjct: 349 ---NQNIVVGGGVIK 360


>gi|302387623|ref|YP_003823445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium saccharolyticum WM1]
 gi|302198251|gb|ADL05822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium saccharolyticum WM1]
          Length = 372

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 136/365 (37%), Positives = 201/365 (55%), Gaps = 14/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 18  KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTGTQEENGGCCGLSAVDDARRV 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +YV +++E F++ VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 78  AWDLGIPYYVMNFKEEFKSQVIDYFVGEYQKGRTPNPCIACNRYVKWESLLKRSLDIGAD 137

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +           R  + + +   +DQ+Y L+  TQ QL     P+G   K+ 
Sbjct: 138 YIATGHYAQIEKLP----NGRYALKKSVTAAKDQTYALYNLTQHQLSHTLMPVGAYSKDQ 193

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A  + L +A K DSQ+ICF+    Y   ++      A EG+ V L+GQ++GRH GI
Sbjct: 194 IREIADRINLMVAHKPDSQEICFIPDNDYAGFIEESAGEKAPEGNFVDLSGQVIGRHKGI 253

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GL ++MG P+FVV +   ++ V++G  + +    +    INW+        
Sbjct: 254 THYTVGQRKGLNLSMGRPVFVVEIRPEANEVVIGTGDDVFSQTLRANHINWMAVDGLHG- 312

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             +  +   KIR S       ++  +DG V   F++ +  +  GQA VFY  D     V+
Sbjct: 313 --ESMRVLAKIRYSHKGAMCTIREAEDGVVECRFDEPQRAITPGQAVVFYEGD----YVV 366

Query: 379 GGGII 383
           GGG I
Sbjct: 367 GGGTI 371


>gi|94499665|ref|ZP_01306202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
 gi|94428419|gb|EAT13392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
          Length = 369

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 193/379 (50%), Gaps = 26/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 8   NTKVIVGMSGGVDSSVSAYLLMEQGYHVEGLFMKNWEEDDGTE---YCTAKEDLADAQAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  +  ++   + + V   F   Y AG TP P + CNR +KF   L   + LGAD
Sbjct: 65  CDKLGIKLHSANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAKILGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R     G        + + +D  +DQSYFL A  + ++    FP+G+++K  
Sbjct: 125 YIATGHYVRRYEKDGS-----TYLLKGLDNNKDQSYFLHAVGEDEIKQTLFPVGELEKPE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ + ++ D +K+     A  G I    G+ +GRH G+
Sbjct: 180 VRRIAEEQGLATAKKKDSTGICFIGERRFKDFLKQYIP--AQPGTIKTPEGEEMGRHEGL 237

Query: 260 INYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YT+GQR+G+G+   +     P +VV  D   + ++VG       L    +    I W+
Sbjct: 238 MYYTLGQRQGIGIGGSKHHGEAPWYVVGKDLERNELMVGQGKDHPLLFSKSLDCFNIYWV 297

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +      +C  K+R  Q      + + D G ++ F++ +  V  GQ+ V Y  +
Sbjct: 298 NG----EPADLPKRCKAKVRYRQADQDCTIDKTDSGYHIIFDEPQRAVTPGQSLVLYDGE 353

Query: 372 SNEARVLGGGIISGSKRSD 390
                 LGGGII  ++ ++
Sbjct: 354 I----CLGGGIIERTQLAE 368


>gi|194468395|ref|ZP_03074381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri 100-23]
 gi|194453248|gb|EDX42146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri 100-23]
          Length = 377

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 197/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D   R  + R  D  +DQ+YFL     +QL  + FPL    
Sbjct: 120 GADYVATGHYADVKR----DENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R +A E GL  ADK DS  ICF+ + G + + + +     A  G++  L+G+++G+
Sbjct: 176 KPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQ 233

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQRRGLG+       EP FV+  D   + + VG       L    +   ++
Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDV 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q  V V V  +DD   V V+F+     +  GQA V
Sbjct: 294 HWVDDVVSRYG--RDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  +   D   + +
Sbjct: 352 FYDGE----ECLGSAIIDRAYSHDRQLQYV 377


>gi|329770388|ref|ZP_08261770.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325]
 gi|328836511|gb|EGF86171.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325]
          Length = 370

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 191/381 (50%), Gaps = 21/381 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV MSGGVDSSV A LLK  GYDVIGV ++ +  +     KG C A +D  D  +V
Sbjct: 4   GKKVVVGMSGGVDSSVTAYLLKEQGYDVIGVFMKNWEEKDD---KGVCVAEKDYADVIKV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L     LGAD
Sbjct: 61  CEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLEYAEDLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +     D   +R++ R +D  +DQ+YFL    Q Q+ ++ FP+G+++K+ 
Sbjct: 121 YVATGHYARVK-----DENGQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + + + +     +  G +V L+G + G H G+
Sbjct: 176 VRRIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--SQSGKMVDLDGNVRGEHIGL 233

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           ++YTIGQR GLG+       GE  F    D  ++ + V      E         +     
Sbjct: 234 MHYTIGQRHGLGIGGTKDTDGEAWFACGKDLENNILYVCQGFHNEKLYSDSLLAS-SLSF 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +D   + F C  K R  Q    V V+    D V V +++    V  GQA VFY  D  
Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVEVEILEGDKVRVVYKEPVRAVTPGQAVVFYDGDI- 351

Query: 374 EARVLGGGIISGSKRSDAVEE 394
               LGG  I    +     +
Sbjct: 352 ---CLGGATIDEVYKDGKKLQ 369


>gi|261867343|ref|YP_003255265.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412675|gb|ACX82046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 383

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 207/389 (53%), Gaps = 29/389 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L +  L +N    +++  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 11  PKLTAQQLAENAT-KKIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF
Sbjct: 67  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKF 126

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA+ +ATGHY+R R    +       + R +D  +DQSYFL+  ++ Q+
Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDNNKDQSYFLYTLSKTQV 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 182 GQSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297
             ++G+I+GRH+G++ +T+GQR+GLG+        +  +VV  D  ++ +IV       +
Sbjct: 240 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHDHSA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +  ++++W+        +    +C VK R  Q  VP  ++  DD  + V F++ +
Sbjct: 300 LLSTGLIAQQLHWVDCL----PIRAPLRCTVKTRYRQTDVPCIIEPIDDETIKVIFDEPQ 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISG 385
           + V  GQ+ VFY  +      LGGGII  
Sbjct: 356 IAVTPGQSAVFYLDEI----CLGGGIIEK 380


>gi|150015984|ref|YP_001308238.1| tRNA-specific 2-thiouridylase MnmA [Clostridium beijerinckii NCIMB
           8052]
 gi|205813680|sp|A6LSF2|MNMA_CLOB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149902449|gb|ABR33282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 358

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK+ GYDVIG T+Q++   +   +R+G CC+   V DARR
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKQQGYDVIGATMQIWQHDEEFEEREGGCCSLSAVDDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD +++  YV ++ + F+  VI  F   Y  G+TP PC++CN+ +KF +LL   R +GA
Sbjct: 62  VCDKLDIPFYVLNFRDYFKEKVIDKFVQEYIDGKTPNPCIECNKHLKFDELLRRARGIGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +           R ++ R  D  +DQ+Y L+  TQ QL     P GD +K 
Sbjct: 122 DYVATGHYAKIEKRDD-----RYLLIRSDDDRKDQTYALYNFTQDQLEHTLMPCGDYEKT 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +          G+ V  +G ILG+H G
Sbjct: 177 KIREIAKEIGLAVHNKKDSEEICFISDNNHGKYISEAEPNRVKPGNFVDKSGNILGKHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+++G P+FV  ++  ++ V++G  + +    +   ++N++      D
Sbjct: 237 IVYYTIGQRKGLGLSLGRPVFVTNINAKTNEVVLGSEDDIFKTELIATDVNFI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +    +G V V F++ +  +  GQ+ VFY  +     V
Sbjct: 293 KLEKEIEVTAKIRYSARPAEATLIPLPNGRVKVIFKEKQRAITKGQSVVFYDDEI----V 348

Query: 378 LGGGIISG 385
           +GGGII  
Sbjct: 349 VGGGIIES 356


>gi|266623735|ref|ZP_06116670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium hathewayi DSM 13479]
 gi|288864455|gb|EFC96753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium hathewayi DSM 13479]
          Length = 369

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 14/367 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    +  G CC    V DAR
Sbjct: 13  KPKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEETEVQEESGGCCGLSAVDDAR 72

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + + +YV +++E FR  VI  F   Y  G TP PC+ CNR VK+  LL  +  +G
Sbjct: 73  RVAWDLGIPYYVMNFKEEFRENVIDYFVDEYRNGRTPNPCIACNRYVKWESLLKRSLDIG 132

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +   +   +DQ+Y L+  TQ QL     P+G   K
Sbjct: 133 ADYIATGHYARIEQL----ENGRYALKMSVTAAKDQTYALYNLTQYQLAHTLMPVGAYSK 188

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + +R++A  + L +A K DSQ+ICF+    Y   ++        +G+ V L+G +LGRH 
Sbjct: 189 DQIREIADRINLKVAHKPDSQEICFIPDHDYARFIEENTGKEPAKGNFVDLDGNVLGRHE 248

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YT+GQR+GL ++MG P+FV  +   ++ V++G    +    +    INW+      
Sbjct: 249 GITHYTVGQRKGLNLSMGHPVFVTEIRPETNEVVIGNSADVFSDTLRCSRINWMAIDGLH 308

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  +   KIR S    P  + +  +D V   F++ +  +  GQA VFY     E  
Sbjct: 309 G---GEMRVTAKIRYSHKGAPCTIREVGEDLVECRFDEPQRAITPGQAVVFYL----ENY 361

Query: 377 VLGGGII 383
           V GGG I
Sbjct: 362 VAGGGTI 368


>gi|227544860|ref|ZP_03974909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300909920|ref|ZP_07127380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri SD2112]
 gi|227185134|gb|EEI65205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300892568|gb|EFK85928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri SD2112]
          Length = 377

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 197/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D   R  + R  D  +DQ+YFL     +QL  + FPL    
Sbjct: 120 GADYVATGHYADVKR----DENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R +A E GL  ADK DS  ICF+ + G + + + +     A  G++  L+G+++G+
Sbjct: 176 KPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQ 233

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQRRGLG+       EP FV+  D   + + VG       L    +   +I
Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q  V V V  ++D   V V+F+     +  GQA V
Sbjct: 294 HWVDDVVSRYG--RDFHCTAKFRYRQTDVGVTVHLSEDDQMVTVEFDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +      LG  II  +   D   + +
Sbjct: 352 FYDGE----ECLGSAIIDRAYSHDRQLQYV 377


>gi|167759055|ref|ZP_02431182.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704]
 gi|167663462|gb|EDS07592.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704]
          Length = 361

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    + +G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEERIVEEEQGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV  ++ + +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  + ++
Sbjct: 62  RRVAASLGIPYYVMNFKQEFKTYVIDYFMDEYLHGRTPNPCIACNRYVKWESLLKRSMEI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R        G  R  +       +DQ+Y L++ TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARIERL----GNGRCSLRTSAASAKDQTYALYSLTQEQLKRTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R LA ++GL++ADK DSQDICFV  G Y   ++  +    L G+ V  +G ++GRH
Sbjct: 178 KDEIRKLAGKIGLNVADKPDSQDICFVPDGDYASYIEANSGARILPGNFVLSDGTVVGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI++YT+GQR+GLG+++G P+FV+ +   ++ +IVG  E      +    IN++     
Sbjct: 238 KGIVHYTVGQRKGLGLSLGHPVFVLDIRPETNEIIVGTNEESLTCHVRADRINFMAI--- 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            + + D  + + KIR +       V++  +D +   FE+ +  VA GQA V Y  +    
Sbjct: 295 -EDLADKKRVWAKIRYNHRGAWCTVEKTGEDEILCIFEEPQRAVAPGQAVVLYDGE---- 349

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 350 YVLGGGTI 357


>gi|148827312|ref|YP_001292065.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae PittGG]
 gi|205816853|sp|A5UFX6|MNMA_HAEIG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148718554|gb|ABQ99681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittGG]
          Length = 385

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 201/374 (53%), Gaps = 26/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+  MSGGVDSSV A +L++ GY V G+ ++ +           C A  D+ DA+ VC
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW-EEDDDDDTDYCTAAADLADAQAVC 83

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 84  DKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGAD 143

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R     GD+   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 144 YIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPI 198

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I  ++ +I+GRH+G+
Sbjct: 199 VRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGL 256

Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        E  +VV  D  ++ +IV        L    +   +++W+
Sbjct: 257 MYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWV 316

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTS 370
                 + + +  +C VK R  Q  +P  ++  DD  + V F++ +  V  GQ+ VFY  
Sbjct: 317 D----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLG 372

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII+
Sbjct: 373 EV----CLGGGIIA 382


>gi|296161025|ref|ZP_06843836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. Ch1-1]
 gi|295888724|gb|EFG68531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. Ch1-1]
          Length = 381

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 128/392 (32%), Positives = 179/392 (45%), Gaps = 29/392 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAISLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +   R  + +  D  +DQSYFL    Q QL    FPLG+  K 
Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGETPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++ L  A K DS  ICF+ +  + D + R        G +    G+++G H G
Sbjct: 174 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367
           +      +   DGF C  K R  Q   P        G     ++F+ ++  V  GQ+ V 
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDTAQWAVTPGQSAVL 347

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
           Y  D      LGGGII  +     V       
Sbjct: 348 YDGDV----CLGGGIIEHAVTGQPVTRQPQKA 375


>gi|209519013|ref|ZP_03267821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. H160]
 gi|209500525|gb|EEA00573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. H160]
          Length = 416

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 180/394 (45%), Gaps = 31/394 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKRKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVR-----ENDGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKTVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP F    D  ++ + V        L  H +     +W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQAC 365
           +      +   +GF C  K R  Q              ++    + F+ ++  V  GQ+ 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFNAASGNASEGLFDLTFDAAQWAVTPGQSA 347

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
           V Y  D      LGGGII  +      E      
Sbjct: 348 VLYDGDV----CLGGGIIERAMTGQPAELPQDQA 377


>gi|157273520|gb|ABV27419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Chloracidobacterium thermophilum]
          Length = 392

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 156/396 (39%), Positives = 213/396 (53%), Gaps = 45/396 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN------SRKASKRKGSCCAGQDVYD 75
           R+ VAMSGGVDSS  AALLK  GYDV+G ++QL+N        + +     CC+  D+YD
Sbjct: 4   RIAVAMSGGVDSSTAAALLKEQGYDVVGFSMQLWNQRRINVDAEGNPLPSRCCSLDDLYD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V + + +  YV ++EE F   V+ PF  SY  G TP PCV CN  +KF  L+++ R 
Sbjct: 64  ARAVAEALGIPFYVLNFEEEFEARVVRPFVVSYLNGNTPSPCVACNSRMKFDTLVALARD 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA  +ATGHY R +    +D   R  + +  DL +DQSYFLF  TQ+QL    FPLG++
Sbjct: 124 VGAAKVATGHYARVQF---NDTTGRWELRKGRDLHKDQSYFLFELTQEQLAWALFPLGEL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI---------------- 239
            K   R LAR  GL  A+K++SQ+ICF+  G Y   ++R  A                  
Sbjct: 181 SKAETRALARRYGLPTAEKAESQEICFIPDGNYARFIERYLAEAGGTVAGEPQSPVAPTL 240

Query: 240 ---------ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV--AMGEPLFVVYLDKNSS 288
                       G+IV  +G++LGRHNGI +YT+GQRRGLGV    G PL+VV +D    
Sbjct: 241 VQLGLRRNMPQPGEIVTTDGRVLGRHNGIHHYTVGQRRGLGVTAGDGRPLYVVRIDAARG 300

Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG- 347
           +VIVGP E+L    +    +NW+        +    +C  +IR      P  +    DG 
Sbjct: 301 QVIVGPEEALTGKTLTATRVNWITL----PELTAPRRCAARIRYRHLEAPATIYPLPDGN 356

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V V F+  +  +  GQA VFY  +     VLGGG I
Sbjct: 357 VRVVFDIPQKAITPGQAVVFYDGE----LVLGGGWI 388


>gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
          Length = 375

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 191/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DADGLTHMMRPKDGNKDQTYFLNQLNQDQIKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL IA K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLAIAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V    +D+   V F++    V  GQA V 
Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGGG I  + + D 
Sbjct: 351 YQGE----ECLGGGNIDAAYQEDK 370


>gi|326390151|ref|ZP_08211712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993799|gb|EGD52230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 364

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 213/372 (57%), Gaps = 14/372 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77
           + RV + MSGGVDSSV A LLK++G+DVIG+T++++   +A       SCC+ +   DA+
Sbjct: 4   NNRVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHEAKAFDSDKSCCSLRATQDAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + + V HY  D+ E F + ++  F + Y  G TP PCV CNR +KF +LL    +LG
Sbjct: 64  KVAEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KK
Sbjct: 124 AYYIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R LA E+ L +A K +SQ+ICF+    Y   +KR        G+   ++G+ LG H 
Sbjct: 181 EEIRALAEELKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHK 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++      
Sbjct: 241 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    K   KIR +       ++   +D V V F K +  +  GQ+ VFY  D     
Sbjct: 297 EKLKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 352

Query: 377 VLGGGIISGSKR 388
           V+GGGII    R
Sbjct: 353 VVGGGIIEKKVR 364


>gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 375

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 191/387 (49%), Gaps = 25/387 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y AG TP P + CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD LA GHY ++ +    D      M RP D  +DQ+YFL   TQ+Q+  + FPL D+ 
Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H
Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   +++IV        L   R+    + 
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +      ED     FK   K R  Q  V V V          V F++    V  GQA V 
Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394
           Y  +      LGGG I  + + D   +
Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373


>gi|91781835|ref|YP_557041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia xenovorans LB400]
 gi|123359156|sp|Q145K0|MNMA_BURXL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91685789|gb|ABE28989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 381

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 179/392 (45%), Gaps = 29/392 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 QTIATGHYARVR-----ENNGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++ L  A K DS  ICF+ +  + D + R        G +    G+++G H G
Sbjct: 174 RVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +     +W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367
           +      +   DGF C  K R  Q   P        G     ++F+ ++  V  GQ+ V 
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDVAQWAVTPGQSAVL 347

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
           Y  D      LGGGII  +             
Sbjct: 348 YDGDV----CLGGGIIEHAVTGQPATRQPQKA 375


>gi|291522307|emb|CBK80600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprococcus catus GD/7]
          Length = 368

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 148/368 (40%), Positives = 200/368 (54%), Gaps = 15/368 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARR 78
            +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++   +       G CC    V DARR
Sbjct: 4   KKVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQEEEDEIVEENGGCCGLSAVDDARR 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I + +YV ++ E FR  VI  F S Y  G TP PC+ CNR VK+  LL     LGA
Sbjct: 64  VAERIGIPYYVMNFREVFREKVIDNFVSEYEKGRTPNPCIVCNRYVKWEALLEKALALGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R           R  + +     +DQ+Y L+   Q QL     P+G   K 
Sbjct: 124 DYIATGHYARIVHLP----NGRYAIEKAAFDRKDQTYALYNLNQHQLAHTLMPVGAYDKS 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+GL +A+K DSQDICFV  G Y   ++        EGD V  NG++LG H G
Sbjct: 180 EVRRIAGEIGLSVANKMDSQDICFVSDGNYQAFIEDYTGKKLPEGDFVDKNGKVLGHHRG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I  YTIGQR+GL +AMG P+FV  ++   +++I+G  + L    +Y   +N +     ++
Sbjct: 240 IGAYTIGQRKGLNLAMGHPVFVTGINPEENKIIIGENDELFQRALYASNVNLMSRASLDE 299

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V    +   KIR +    P   ++  DG +YV F++ +  +  GQA V Y  D     V
Sbjct: 300 PV----RLTAKIRYAHKAAPCIARQLPDGSLYVCFDEPQRAITPGQAVVLYDGD----LV 351

Query: 378 LGGGIISG 385
            GGGII  
Sbjct: 352 AGGGIIEK 359


>gi|320540371|ref|ZP_08040021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia symbiotica str. Tucson]
 gi|320029302|gb|EFW11331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia symbiotica str. Tucson]
          Length = 366

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    +V+V +SGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA
Sbjct: 3   DNSQKKVIVGISGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAAADLADA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135
           + VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      
Sbjct: 60  QAVCDKLGIKLHTVNFAAEYWDNVFELFLEEYQAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L AD +ATGHY+R +     D   +  + R +D  +DQSYFL+  + +Q+    FP+G++
Sbjct: 120 LDADFIATGHYVRRQ-----DVDGKSHLLRGIDSNKDQSYFLYTLSHEQVAQSLFPVGEL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK  VR +A ++ L  A K DS  ICF+ + K+ D + R     A  G I  ++GQ +G+
Sbjct: 175 KKPQVRCIAEQLALVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGLIASVDGQTVGK 232

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEEPWYVVDKDVANNMLVVAQGHDHPRLMSAGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           ++W+          + F+C VK R  Q  +   V   DD  + V F++    V  GQ+ V
Sbjct: 293 LHWVD----RMPRSEPFRCTVKTRYRQQDILCRVTPLDDQRIEVRFDEPVAAVTPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +      LGGGII 
Sbjct: 349 FYQGEI----CLGGGIIE 362


>gi|71065801|ref|YP_264528.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter arcticus 273-4]
 gi|123648512|sp|Q4FSB4|MNMA_PSYA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71038786|gb|AAZ19094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter arcticus 273-4]
          Length = 408

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 131/397 (32%), Positives = 207/397 (52%), Gaps = 22/397 (5%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
              +A R  +L    NP    V+V MSGGVDSSV A LL++ G+ V G+ ++ +     +
Sbjct: 14  AAFDAHRPLTLTYIDNPSTKHVIVGMSGGVDSSVSAVLLQQAGFVVEGLFMKNWEEDDGT 73

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           +    C A  D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CN
Sbjct: 74  E---YCTAMDDLADAQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCN 130

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           + +KF   L     LGAD +ATGHY R  + Y  +DG     + R +D  +DQSYFL A 
Sbjct: 131 KEIKFKAFLDYALTLGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAV 190

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
              +L    FP+G+++K  VR +A E  L  A+K DS  ICF+ + ++ D +++     A
Sbjct: 191 GGDKLAKTLFPVGELEKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--A 248

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP- 294
            +GDIV  +G  +G H+G++ YT+GQR G+G+        EP FV+  D +++R+IVG  
Sbjct: 249 QKGDIVTDDGINIGTHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQG 308

Query: 295 --RESLEVHRIYLREINWLGDGLFEDA-VVDGFKCFVKIRSSQDPVPVF---VQRNDDGV 348
                +  + ++  +++W       D   ++G +C  K R  Q         V  +   V
Sbjct: 309 HEHPMMLSNELHAYKLDWTDGLPPTDIFSLEGLRCMAKSRYRQPDQACRVFAVNADGSEV 368

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            V F++ +  V  GQ+ VFY  +      LGGG+I+ 
Sbjct: 369 RVIFDEPQRAVTPGQSAVFYIEEV----CLGGGVIAS 401


>gi|323702190|ref|ZP_08113857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532877|gb|EGB22749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 366

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 206/370 (55%), Gaps = 14/370 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77
             +V+ AMSGGVDSSV AALL++ GY+V+GVT+Q+++            CC+   V DAR
Sbjct: 4   KGKVIAAMSGGVDSSVTAALLQQQGYEVVGVTMQIWDPDVTVVDGDYVGCCSLSAVDDAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + + + +YVF++ E F   VI  F   Y  G TP PC+ CNR +KF  LL   RQ+G
Sbjct: 64  RVANILGIPYYVFNFRELFTEKVIQYFVDEYLRGRTPNPCIACNRFIKFEALLQKARQMG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY R       +  +R  + +  D  +DQ+Y L+  TQ Q+     PL D  K
Sbjct: 124 FDYIATGHYARLGYS---EEYKRYTVRKARDERKDQTYVLYGFTQDQIAHTLMPLADYTK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR++AR  GL  A K +SQ+ICFV    Y + ++  +      G  + L G ++G+H 
Sbjct: 181 EQVREMARRWGLPTATKPESQEICFVHDNNYRNFLEERSVEGIKPGPFLDLKGNVIGQHR 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGLG+A GE ++VV +D   + VIVGP E++    +   + N++      
Sbjct: 241 GIPFYTIGQRRGLGIATGERVYVVDIDPERNAVIVGPEEAIWGTELIASDNNFI----LY 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   ++R +  P P  ++  ++G V V F+  +  +  GQA V+Y  D     
Sbjct: 297 DKITGPTEVEAQVRYNSKPSPALLEPLENGLVKVTFKYPQRSITPGQAVVYYQGD----Y 352

Query: 377 VLGGGIISGS 386
           ++GGG I  S
Sbjct: 353 LVGGGTIEKS 362


>gi|300690463|ref|YP_003751458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum PSI07]
 gi|299077523|emb|CBJ50149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum PSI07]
          Length = 370

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 187/378 (49%), Gaps = 27/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QLC   FPLG++ K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLCRTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I   + + +G+H G
Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDDKTIGQHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +          +G +   K R  Q   P  V R   G + + F +++  V  GQ+ V Y 
Sbjct: 292 VAGH----PPAEGTQLAAKTRYRQTDAPCAVTRAAGGALTLTFPQAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSK 387
            D      LGGGII+ ++
Sbjct: 348 GDV----CLGGGIIASTE 361


>gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM]
 gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|73920126|sp|Q5FKU0|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 375

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 189/384 (49%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F   Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTIT----DANGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V   G+++G H
Sbjct: 176 KPQVREIALANGLVTAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPEGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D       C  K R  Q  + V V    +D+ V V F++    V  GQA V 
Sbjct: 294 FFTGKPDHDF---EMHCTAKFRYRQCDIGVTVKYHADDNTVDVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      +GGG I  + + D 
Sbjct: 351 YNGE----ECIGGGNIDAAFQEDK 370


>gi|134280393|ref|ZP_01767104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 305]
 gi|226198381|ref|ZP_03793950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pakistan 9]
 gi|134248400|gb|EBA48483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 305]
 gi|225929564|gb|EEH25582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 377

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 180/391 (46%), Gaps = 32/391 (8%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I
Sbjct: 1   MVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLI 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +AT
Sbjct: 58  GIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIAT 117

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++
Sbjct: 118 GHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREI 172

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT
Sbjct: 173 AAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYT 230

Query: 264 IGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
            GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+    
Sbjct: 231 FGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG-- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
             +   DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y  D
Sbjct: 289 --EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGD 346

Query: 372 SNEARVLGGGIIS--GSKRSDAVEESLLSVI 400
                 LGGGII    + R+          +
Sbjct: 347 V----CLGGGIIESAATGRAGTAPAGRAPAL 373


>gi|93005976|ref|YP_580413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter cryohalolentis K5]
 gi|122415456|sp|Q1QBM4|MNMA_PSYCK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|92393654|gb|ABE74929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter cryohalolentis K5]
          Length = 408

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 207/396 (52%), Gaps = 23/396 (5%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
                 L   D++ +P    V+V MSGGVDSSV A LL++ G+ V G+ ++ +     ++
Sbjct: 16  FDAHRPLTLADIN-DPSTKHVIVGMSGGVDSSVSAVLLQQAGFMVEGLFMKNWEEDDGTE 74

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
               C A  D+ DA+ VCD I +  +  ++   + + V   F + Y AG TP P + CN+
Sbjct: 75  ---YCTAMDDLADAQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNK 131

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            +KF   L     LGAD +ATGHY R  + Y  +DG     + R +D  +DQSYFL A  
Sbjct: 132 EIKFKAFLDYALTLGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAVG 191

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             +L    FP+G++KK  VR +A E  L  A+K DS  ICF+ + ++ D +++     A 
Sbjct: 192 GDKLAKTLFPVGELKKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--AQ 249

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRE 296
           +GDIV  +G  +G H+G++ YT+GQR G+G+        EP FV+  D +++R+IVG   
Sbjct: 250 KGDIVTDDGITIGTHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQGH 309

Query: 297 S---LEVHRIYLREINWLGDGLFEDA-VVDGFKCFVKIRSSQDPVPVFVQRNDDG---VY 349
               +  + +   +++W+      D    DG +C  K R  Q      V  N++    V 
Sbjct: 310 EHAMMLSNELQAYKLDWVDVLPPADIFSEDGLRCMAKSRYRQPDQACTVFANNENGSEVR 369

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           V F++ +  V  GQ+ VFY  +      LGGG+I+ 
Sbjct: 370 VVFDEPQRAVTPGQSAVFYIDEV----CLGGGVIAS 401


>gi|295091002|emb|CBK77109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cf. saccharolyticum K10]
          Length = 359

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 199/368 (54%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++   +    +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + + + +YV ++++ FR  V+  F + Y  G TP PC+ CNR VK+  LL  + ++
Sbjct: 62  RRVAEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + +     +DQ+Y L+  TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARIEKLP----NGRYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A+E+ L +A K DSQ+ICF+    Y   ++        EG+ V L G +LGRH
Sbjct: 178 KDEIRKMAQELNLRVAHKPDSQEICFIPDNDYARFIREDIGKELPEGNFVDLQGNVLGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQR+GL ++MG P+FVV +   ++ V++G    +    +    INW+     
Sbjct: 238 KGITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGL 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                +  +   KIR      P  V+    D     F++ +  +  GQA V Y  +    
Sbjct: 298 HG---EEHRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGE---- 350

Query: 376 RVLGGGII 383
            V GGG I
Sbjct: 351 YVAGGGTI 358


>gi|283795899|ref|ZP_06345052.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. M62/1]
 gi|291076535|gb|EFE13899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. M62/1]
          Length = 359

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 199/368 (54%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++   +    +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + + + +YV ++++ FR  V+  F + Y  G TP PC+ CNR VK+  LL  + ++
Sbjct: 62  RRVAEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + +     +DQ+Y L+  TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARIEKLP----NGRYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A+E+ L +A K DSQ+ICF+    Y   ++        EG+ V L G +LGRH
Sbjct: 178 KDEIRKMAQELNLRVAHKPDSQEICFIPDNDYAKFIREDIGKELPEGNFVDLQGNVLGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQR+GL ++MG P+FVV +   ++ V++G    +    +    INW+     
Sbjct: 238 KGITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGL 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                +  +   KIR      P  V+    D     F++ +  +  GQA V Y  +    
Sbjct: 298 HG---EEHRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGE---- 350

Query: 376 RVLGGGII 383
            V GGG I
Sbjct: 351 YVAGGGTI 358


>gi|182418877|ref|ZP_02950134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum 5521]
 gi|237667388|ref|ZP_04527372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377160|gb|EDT74728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum 5521]
 gi|237655736|gb|EEP53292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 360

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 208/369 (56%), Gaps = 15/369 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDAR 77
              +V++ MSGGVDSSV A LLK  GY+VIG T+Q++   K   +R+G CC+   V DAR
Sbjct: 3   SKKKVLIGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEFEEREGGCCSLSAVEDAR 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RVCD + +  YV ++ + F+  VI PF   Y  G TP PC++CN+ +KF +LL   R +G
Sbjct: 63  RVCDKLGIPFYVLNFRDYFKEKVIEPFIQEYMDGRTPNPCIECNKHLKFDELLRRARGIG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY +      ++   R ++ R  D  +DQ+Y L+  TQ QL     P G  +K
Sbjct: 123 ADYVATGHYAKI-----EERDGRYLLIRSDDDSKDQTYALYNFTQDQLAHTLMPCGAYEK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R++A+E+GL + +K DS++ICF+    +   +          G+ V   G +LG+H 
Sbjct: 178 TKIREIAKEIGLAVHNKKDSEEICFISDNNHGKYISEARPSRVKPGNFVDKEGNVLGKHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI+ YTIGQR+GLG+++G P+FV  ++  ++ VI+G  + +  + +   ++N++      
Sbjct: 238 GIVYYTIGQRKGLGLSLGRPVFVTGINAKTNEVIIGSEDEIFKNDLIATDVNFISF---- 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +        KIR S  P    +    +G V V F+  +  +  GQ+ VFY  +     
Sbjct: 294 DKLEGELNVQAKIRYSARPAEAIIYPLPNGKVKVSFKDKQRAITKGQSVVFYDKEV---- 349

Query: 377 VLGGGIISG 385
           V+GGGII  
Sbjct: 350 VVGGGIIES 358


>gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 269-3]
 gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932449|ref|ZP_06337874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
 gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 1153]
 gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 269-3]
 gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 1153]
 gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303398|gb|EFA95575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 192/393 (48%), Gaps = 29/393 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +RV D I + +Y  ++E+ +   V   F S Y  G TP P + CN  +KF   L     L
Sbjct: 60  KRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q+Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DANGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A + GL  A K DS  ICF+ +  +   +       A  G +V  +G ++G+H
Sbjct: 176 KPQVREIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGQH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L    +    ++
Sbjct: 234 GGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVF 367
           +       D     F C  K R  Q  V V V+ +       V F++    V  GQA V 
Sbjct: 294 FYTGNPDHD---VEFDCTAKFRYRQADVGVHVKYHAATKTCDVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
           Y  +      LGGG I  + +    EE  L ++
Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375


>gi|167765590|ref|ZP_02437654.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1]
 gi|167712775|gb|EDS23354.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1]
          Length = 363

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 204/365 (55%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + HYV ++ + F++ VI  F   Y    TP PC+ CNR VK+  LL     +GAD
Sbjct: 64  AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +           R  +      ++DQ+Y L+  TQ QL     P+G   K+ 
Sbjct: 124 YIATGHYSQITKLD----NGRYALKCSKTQKKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL +A+K DSQDICFV    Y + ++        +G+ V   G +LG H GI
Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L  + +Y  ++N +    FED 
Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFED- 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              G K   KIR +   VP  V    +D V V F++ +  +  GQA VFY  D     V 
Sbjct: 298 ---GMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350

Query: 379 GGGII 383
           GG  I
Sbjct: 351 GGATI 355


>gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1112]
 gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
 gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1112]
 gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
 gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1118]
          Length = 375

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 188/384 (48%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL    Q Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DANGVTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L   R+   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D       C  K R  Q  + V V     D+   V F++    V  GQA V 
Sbjct: 294 FFTGKPDHDF---EMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGGG I  + + D 
Sbjct: 351 YNGE----ECLGGGNIDAAYQEDK 370


>gi|260588149|ref|ZP_05854062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blautia hansenii DSM 20583]
 gi|260541676|gb|EEX22245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blautia hansenii DSM 20583]
          Length = 361

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 205/368 (55%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
              +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++        +  G CC    V DA
Sbjct: 2   SGKKVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   +++ +YV ++ + F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVAQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  +   +  ++DQ+Y L+  TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARVEQLP----NGRYAIRNSVTAKKDQTYALYNLTQEQLSRTLMPVGEYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE +R +A+E GL +A K DSQ+ICFV    Y   ++        EG+ V  +G ++G+H
Sbjct: 178 KEEIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YTIGQR+GL ++MG P+FV  +  +++ V++G  E L V  +    +N++     
Sbjct: 238 KGIIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAIDHL 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E    +G +   KIR +       ++   +G V V F +S+  V  GQA VFY  +    
Sbjct: 298 E----EGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFRESQRAVTPGQAVVFYDGE---- 349

Query: 376 RVLGGGII 383
            V GGGII
Sbjct: 350 YVAGGGII 357


>gi|91776467|ref|YP_546223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacillus flagellatus KT]
 gi|123254088|sp|Q1GZF5|MNMA_METFK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91710454|gb|ABE50382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacillus flagellatus KT]
          Length = 360

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 185/376 (49%), Gaps = 27/376 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSSV A LLK  GY+V+G+ ++ +      +    C A QD+ DA  V
Sbjct: 2   KKKVIVGMSGGVDSSVAALLLKEQGYEVVGLFMKNWEDDDTDE---YCPAKQDLIDAAAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++ + ++  V   F   Y+AG TP P + CN  +KF   L     LG D
Sbjct: 59  ADKIGIELEAVNFSKEYKERVFANFLEEYSAGRTPNPDILCNSEIKFKAFLDHAMALGGD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY + R     +      + +  D  +DQSYFL+   Q QL    FPLG + K  
Sbjct: 119 LMATGHYAQVR-----EKNGLFQLMKADDGTKDQSYFLYRLNQAQLSKTLFPLGHLLKRE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +RD+AR  GL  ++K DS  ICF+ +  + + + R        G+I    G+++G+H+G+
Sbjct: 174 IRDIARRAGLPTSEKKDSTGICFIGERPFQEFLSRYLPRA--PGEIQTPEGKVVGQHHGL 231

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YT+GQR+GLG+       GEP FV   D   + +IV        L    +    ++W+
Sbjct: 232 MYYTMGQRQGLGIGGSKDSNGEPWFVAGKDMQRNVLIVVQGHDHPLLLNDGLIADNLHWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                 +     +    K R  Q   P  + R D G   + F   +  +  GQ+ V Y S
Sbjct: 292 AG----EEPKTHWVYAAKTRYRQPDAPCEIDRLDSGTAEIRFGHKQWAITPGQSVVVYES 347

Query: 371 DSNEARVLGGGIISGS 386
           +      LGGGII+ +
Sbjct: 348 NV----CLGGGIITSA 359


>gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|123077302|sp|Q1GAS1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 375

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 191/387 (49%), Gaps = 25/387 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y AG TP P + CN  VKF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD LA GHY ++ +    D      M RP D  +DQ+YFL   TQ+Q+  + FPL D+ 
Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H
Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   +++IV        L   R+    + 
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +      ED     FK   K R  Q  V V V          V F++    V  GQA V 
Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394
           Y  +      LGGG I  + + D   +
Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373


>gi|169632892|ref|YP_001706628.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii SDF]
 gi|229486328|sp|B0VUD6|MNMA_ACIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169151684|emb|CAP00474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii]
          Length = 377

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236

Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVTNNRLVVGQGHDHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     ++   +G +C  K R  Q      V  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|51893527|ref|YP_076218.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
 gi|81388362|sp|Q67LS2|MNMA_SYMTH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51857216|dbj|BAD41374.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 390

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 138/375 (36%), Positives = 196/375 (52%), Gaps = 15/375 (4%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK----GSCCAGQD 72
            P   RV++AMSGGVDSSV AALL   GY+VIGVT+  +      + +      CC+   
Sbjct: 24  RPVAKRVLMAMSGGVDSSVAAALLVEQGYEVIGVTMNTWTDDIPEEIQMNQHSGCCSLAA 83

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DAR V   + + +YV +++ +F   VI  F   Y  G TP PC+ CNR VKFS  L  
Sbjct: 84  VEDARSVAHKLGIPYYVMNFQGQFARTVIDYFIEEYTRGRTPNPCIACNRYVKFSAFLEK 143

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +QL  D +ATGHY    +   D    R ++ +  D  +DQ+Y L   TQ+ L    FP+
Sbjct: 144 AKQLECDYVATGHYA--VIGQDDRFPGRWLLGKSADARKDQTYVLHNLTQEALAHTLFPV 201

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G ++K  VR LA + G   ADK DSQ+ICFV    Y   +K       + G I++  G++
Sbjct: 202 GHLQKSEVRALAAKYGFVTADKPDSQEICFVYDNDYGRFLKERAPEAIVPGPILNTRGEV 261

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G+  YTIGQR+GLG+    P++VV LD   + VIVG  E      +   ++NW+ 
Sbjct: 262 IGQHQGLPLYTIGQRKGLGLTTPRPVYVVDLDVERNAVIVGEDEETYRGGLVASDLNWIA 321

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                  +    +C  KIR         +    +D V V+F++ +  +  GQA VFY  D
Sbjct: 322 I----PGLTFPRRCRAKIRRMAPEAECTIYPIGEDAVRVEFDRPQRAITPGQAVVFYDGD 377

Query: 372 SNEARVLGGGIISGS 386
                VLGGG I  +
Sbjct: 378 ----WVLGGGTIERA 388


>gi|317498544|ref|ZP_07956838.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894237|gb|EFV16425.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 363

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 204/365 (55%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        +  G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I + HYV ++ + F++ VI  F   Y    TP PC+ CNR VK+  LL     +GAD
Sbjct: 64  AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +           R  +      ++DQ+Y L+  TQ QL     P+G   K+ 
Sbjct: 124 YIATGHYSQITKLD----NGRYALKCSKTQKKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL +A+K DSQDICFV    Y + ++        +G+ V   G +LG H GI
Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L  + +Y  ++N +    FED 
Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFED- 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              G K   KIR +   VP  V    +D V V F++ +  +  GQA VFY  D     V 
Sbjct: 298 ---GMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350

Query: 379 GGGII 383
           GG  I
Sbjct: 351 GGATI 355


>gi|187933232|ref|YP_001885369.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B str.
           Eklund 17B]
 gi|205813703|sp|B2THM7|MNMA_CLOBB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187721385|gb|ACD22606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 361

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIG T+Q++   K   +R+G CC+   V DARR
Sbjct: 5   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD +++  YV ++ + F+  VI PF   Y  G TP PC++CN+ +KF +LL   + +G 
Sbjct: 65  VCDKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGV 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      D    R ++ R  D  +DQ+Y L+  TQ QL     P G+  K+
Sbjct: 125 DYIATGHYAKI-----DKKDDRYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +     G    G+ V  +G ILG+H G
Sbjct: 180 RIREIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNILGKHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+++G P+FV  ++  ++ V++G  E +    +   ++N++      D
Sbjct: 240 IVYYTIGQRKGLGLSVGRPVFVTDINPKTNEVVIGAEEDIFKTELIAGDLNFITF----D 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +    DG V V F + +  +  GQ+ VFY  +     V
Sbjct: 296 KLEKEIEVEAKIRYSARPGKATIVPLKDGRVKVVFNEKQRAITKGQSVVFYNGNI----V 351

Query: 378 LGGGIISG 385
           +GGG+I  
Sbjct: 352 IGGGVIEA 359


>gi|169795184|ref|YP_001712977.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AYE]
 gi|213158152|ref|YP_002320203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB0057]
 gi|215482732|ref|YP_002324930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|239501147|ref|ZP_04660457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB900]
 gi|260556664|ref|ZP_05828882.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606]
 gi|294837181|ref|ZP_06781864.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013113]
 gi|294860682|ref|ZP_06798451.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013150]
 gi|301346855|ref|ZP_07227596.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB056]
 gi|301511134|ref|ZP_07236371.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB058]
 gi|301596413|ref|ZP_07241421.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB059]
 gi|205811029|sp|B0VBY5|MNMA_ACIBY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205815008|sp|A3M7G3|MNMA_ACIBT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226704765|sp|B7GZ21|MNMA_ACIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226704766|sp|B7I4K8|MNMA_ACIB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169148111|emb|CAM85974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AYE]
 gi|213057312|gb|ACJ42214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB0057]
 gi|213987036|gb|ACJ57335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|260409923|gb|EEX03223.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606]
          Length = 377

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236

Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     ++   +G +C  K R  Q      V  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 375

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 191/387 (49%), Gaps = 25/387 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y AG TP P + CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALAL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD LA GHY ++ +    D      M RP D  +DQ+YFL   TQ+Q+  + FPL D+ 
Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H
Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   +++IV        L   R+    + 
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +      ED     FK   K R  Q  V V V          V F++    V  GQA V 
Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394
           Y  +      LGGG I  + + D   +
Sbjct: 351 YNGE----ECLGGGNIDDAFKDDKKLQ 373


>gi|18310765|ref|NP_562699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens str. 13]
 gi|18145446|dbj|BAB81489.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens str. 13]
          Length = 350

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 137/361 (37%), Positives = 207/361 (57%), Gaps = 15/361 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV A LLK  GYDVIGVT+Q++   K   +R+G CC+   V DARRV   +++
Sbjct: 1   MSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVAQKLDI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV ++ + F+  VI  F   Y  G TP PC+ CN+ +KF +LL   + +GAD +ATGH
Sbjct: 61  PFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADYVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y +      ++   R  + R  D  +DQ+Y L+  TQ+QL     P G+  K+ +R++A+
Sbjct: 121 YAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKIREIAK 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E+GLD+ +K DS++ICF+    +   +          G+ V   G +LG+H GI+ YTIG
Sbjct: 176 EIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIVYYTIG 235

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325
           QR+GLG+A+G P+FV  ++  ++ V+VGP E +    +  ++IN++      D +    +
Sbjct: 236 QRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----DKLEGPME 291

Query: 326 CFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              KIR S  P    +   ++G V V FE  +  +  GQ+ VFY  D     V+GGGII 
Sbjct: 292 VEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVGGGIIE 347

Query: 385 G 385
            
Sbjct: 348 S 348


>gi|73542506|ref|YP_297026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia eutropha JMP134]
 gi|123624143|sp|Q46XF1|MNMA_RALEJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72119919|gb|AAZ62182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia eutropha JMP134]
          Length = 362

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 185/378 (48%), Gaps = 26/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRQ----NAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 175 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 232

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  S+ + V        L    +   +++W
Sbjct: 233 LAFYTLGQRKGIGLGGSREGSGDAWYVARKDMASNTLYVVQGHDHPWLLTPTLVAADLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +      +  + G     K R  Q   P  V   D D + + F +++  V  GQ+ V Y 
Sbjct: 293 VAG----EPPLAGASMAAKTRYRQSDAPCVVDAADGDMLKLAFAEAQWAVTPGQSAVLYD 348

Query: 370 SDSNEARVLGGGIISGSK 387
            D      LGGGII  ++
Sbjct: 349 GDV----CLGGGIIQSAQ 362


>gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122275384|sp|Q04B58|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 375

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 192/387 (49%), Gaps = 25/387 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ +   V   F   Y AG TP P + CN  VKF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD LA GHY ++ +    D      M RP D  +DQ+YFL   TQ+Q+  + FPL D+ 
Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E GL  A K DS  ICF+ +  +   +       A  GD+V  +G+++G H
Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   +++IV        L   R+    + 
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367
           +      ED     FK   K R  Q  V V V+         V F++    V  GQA V 
Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394
           Y  +      LGGG I  + + D   +
Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373


>gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Allochromatium vinosum DSM 180]
 gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Allochromatium vinosum DSM 180]
          Length = 371

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 184/380 (48%), Gaps = 26/380 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            + P   RV+V +SGGVDS++ A  L   GY V  + ++ +    A   +G C A +D+ 
Sbjct: 5   AQTPSAQRVIVGLSGGVDSAIAAHRLLEQGYAVEALFMKNWEEDDA---EGYCAAAEDLA 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DAR V + + +  +  ++   + + V   F   Y A  TP P V CNR +KF+  L    
Sbjct: 62  DARAVAERLGIRLHTVNFSAEYWDRVFEYFLREYQALRTPNPDVLCNREIKFAAFLDHAL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+ +ATGHY R    V  D +    + R +D ++DQ+YFL    Q+QL    FPL D
Sbjct: 122 GLGAEAIATGHYAR----VVADAQGGYHLHRAVDADKDQTYFLHLLDQEQLSRALFPLAD 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR LAR +GL  A K DS  ICF+ + ++ D + R        G I    G  LG
Sbjct: 178 LTKGEVRALARRLGLANAAKKDSTGICFIGERRFSDFLARYLPRE--PGPIETPEGVRLG 235

Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H+G+  YT+GQR+GLG+         P +V   D  ++R+IV        L    +   
Sbjct: 236 EHHGLAYYTLGQRQGLGIGGVSQGREAPWYVAVKDSANNRLIVVQDSRHPLLMSTGLEAL 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQAC 365
           + +W+     E      F+C  ++R  Q       V+   DG  V F++ +  V  GQ+ 
Sbjct: 296 QPHWISGRAPETP----FRCLARLRHRQPLQACELVEIGADGCRVRFDEPQRAVTPGQSV 351

Query: 366 VFYTSDSNEARVLGGGIISG 385
           VFY     E   LGG +I  
Sbjct: 352 VFYQ----ETECLGGAVIER 367


>gi|238026255|ref|YP_002910486.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia glumae BGR1]
 gi|237875449|gb|ACR27782.1| TRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia glumae BGR1]
          Length = 393

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 180/387 (46%), Gaps = 32/387 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + + +D  +DQSYFL    Q QL   RFPLG+M K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKALDQTKDQSYFLHRLNQAQLSKTRFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A  +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G
Sbjct: 174 QVREIAARIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMRTPDGRRVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSRDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQA 364
           +      +   DGF C  K R  Q             +  +    + F+  +  V  GQ+
Sbjct: 292 VAG----EPPADGFVCGAKTRYRQADSACSFARAKAGEAGEPRFSLAFDAPQWAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391
            V Y  +      LGGGII     S  
Sbjct: 348 AVLYDGEV----CLGGGIIETVATSQP 370


>gi|184158965|ref|YP_001847304.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii ACICU]
 gi|294840582|ref|ZP_06785265.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6014059]
 gi|205811014|sp|B2HVN5|MNMA_ACIBC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183210559|gb|ACC57957.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Acinetobacter baumannii ACICU]
 gi|322508947|gb|ADX04401.1| trmU [Acinetobacter baumannii 1656-2]
 gi|323518933|gb|ADX93314.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 377

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236

Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     ++   +G +C  K R  Q      V  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|50084409|ref|YP_045919.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. ADP1]
 gi|73919892|sp|Q6FCW2|MNMA_ACIAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49530385|emb|CAG68097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ADP1]
          Length = 377

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 202/376 (53%), Gaps = 23/376 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   +     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFIDHAMTLGAD 118

Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R    + +  G+    + R +D  +DQSYFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYTRRGESMQNSRGESYAPLLRGVDNNKDQSYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 EVRKIAEKLDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236

Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT          GL  A     FV++ D  ++R+++G       ++   ++ ++I+W
Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDLENNRLVIGQGHEHPLMQSTTLWSQDIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     +D    GF+C  K R  Q      + R++D   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QDIPASGFRCTAKTRYRQPDQACTIYRDEDRNNGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGII 383
           YT++      LGGG+I
Sbjct: 355 YTNEI----CLGGGVI 366


>gi|154244361|ref|YP_001415319.1| tRNA-specific 2-thiouridylase MnmA [Xanthobacter autotrophicus Py2]
 gi|154158446|gb|ABS65662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthobacter autotrophicus Py2]
          Length = 436

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/386 (54%), Positives = 262/386 (67%), Gaps = 5/386 (1%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +  T L  LD D +P   RVVVAMSGGVDSSVVA L  R GYDV+GVTLQLY+  +A+ R
Sbjct: 46  TTMTDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHR 105

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           +G+CCAGQD+YDA  V  T+ + HYV DYE RF+  VI  FA+SYA+G TP+PCVDCNRT
Sbjct: 106 RGACCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRT 165

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL+   +LGA  LATGHY+ SR         RR + R  +  RDQSYFL+ATT  
Sbjct: 166 VKFRDLLATAEELGARYLATGHYVASRALPD----GRRGLYRAAEEARDQSYFLYATTAA 221

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL  LRFPLG+M+K  VR LA E GL +ADK DSQDICFV  G Y  VV+R+    A  G
Sbjct: 222 QLERLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPG 281

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           DIVHL+G++LGRH G+++YTIGQR+GLG+A  EPL+V+ +D    +V VGPR +L V  I
Sbjct: 282 DIVHLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAI 341

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASG 362
            + ++NWLGD  F DA+      +VK+RS++ PVP  + R  DG   V     E GVA G
Sbjct: 342 TIDDVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPG 401

Query: 363 QACVFYTSDSNEARVLGGGIISGSKR 388
           QACV Y      AR+LGGG I  ++R
Sbjct: 402 QACVLYDDAGAAARLLGGGTIMRAER 427


>gi|291545182|emb|CBL18291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus sp. 18P13]
          Length = 359

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 210/367 (57%), Gaps = 15/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDVYDAR 77
            +V++ MSGGVDSSV A  L+++GYDV GVTL+L+       A     +CCA +DV DAR
Sbjct: 2   KKVMIGMSGGVDSSVAALRLQQEGYDVTGVTLKLFGDEDIIQAPDATRTCCALRDVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V   +   H VF++++ FR+ V+ PF  SY  GETP PC+DCNR +KF  +L     LG
Sbjct: 62  SVAYRLGFEHLVFNFKDAFRSHVMQPFCDSYLRGETPNPCIDCNRHIKFDAMLRRAEALG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY   R    D    R ++CRP D  +DQ+Y L+  TQ QL    FPLGD++K
Sbjct: 122 YDYIATGHYAVRR---QDPATGRYLLCRPKDRSKDQTYVLYNLTQHQLAHTLFPLGDLEK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A   GL  + K DSQDICFV  G Y   ++         GD +   G  +GRH 
Sbjct: 179 AQVRQMAEAAGLVNSHKPDSQDICFVPDGDYAGYIRHATGAEIQPGDFLDTTGNPIGRHR 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+I+YTIGQR+GLG+++G P +VV  D  S+ V +G    L      +RE+NW+      
Sbjct: 239 GLIHYTIGQRKGLGLSLGRPAYVVGKDAASNTVTIGAESDLYTDSFTVRELNWISI---- 294

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            A+    +  VK R SQ  VP  ++  +DG     FE  +  V +GQ+ VFY  D+    
Sbjct: 295 PALTAPMQVTVKTRYSQTEVPCRIEPMEDGTCRAVFEAPQRAVTAGQSAVFYDGDT---- 350

Query: 377 VLGGGII 383
           V+GGGII
Sbjct: 351 VVGGGII 357


>gi|94311890|ref|YP_585100.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus metallidurans CH34]
 gi|205816893|sp|Q1LJ45|MNMA_RALME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|93355742|gb|ABF09831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cupriavidus metallidurans CH34]
          Length = 359

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 177/374 (47%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV +SGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGLSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVAS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADVIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R         +  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 NTIATGHYARVRQAA----NGKFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G +    G+++G H G
Sbjct: 175 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPEGKVVGEHIG 232

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  S+ + V        L    +   +++W
Sbjct: 233 LAFYTLGQRKGIGLGGSRDGSGDAWYVARKDMASNTLYVVQGHDHPWLLTSELNAADLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      +    G     K R  Q   P  V     D + + F + +  V  GQ+ V Y 
Sbjct: 293 VAG----EPPAAGATMAAKTRYRQSDAPCRVVAAEGDALKLSFAEPQWAVTPGQSAVLYD 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGGII
Sbjct: 349 GDV----CLGGGII 358


>gi|254475742|ref|ZP_05089128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. R11]
 gi|214029985|gb|EEB70820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. R11]
          Length = 381

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M       LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MAQESNPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GAHGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG+HNG+I+YTIGQRRGLG+  + EPL+VV LD ++ +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLGQHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDNKQVVVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F       +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFTSQP--EWHLKVKVRSTRPPREAIIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  +   +R+ GGG I
Sbjct: 354 GVSPGQACVFYAGE--GSRIYGGGWI 377


>gi|197303193|ref|ZP_03168235.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
           29176]
 gi|197297733|gb|EDY32291.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
           29176]
          Length = 358

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
              +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   + +  +  G CC    V DA
Sbjct: 2   SKGKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENTVQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   I + +YV ++++ F+ +VI  F   Y AG TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVAAAIGIPYYVMNFKDEFQKSVIEYFTKEYLAGRTPNPCIACNRYVKWEALLQRSLSI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + R   +E+DQ+Y L+  TQ+QL     P+G+  
Sbjct: 122 GADYIATGHYARIEHLP----NGRYAIRRSATMEKDQTYALYNLTQEQLARTLMPVGEYS 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R++A E+GL +A K DSQDICFV  G Y   ++     +   G+ V   G++LG+H
Sbjct: 178 KDRIREMADEIGLLVAHKPDSQDICFVPDGDYASFIENTTDQVLPTGNFVTPEGKVLGKH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GII+YT+GQR+GLG+A+G P FV+ +   ++ V++G  E    + +   E+N++     
Sbjct: 238 KGIIHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTYTVRANELNFMSV--- 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            + + +  + F KIR +       V+R  +D +   F++       GQA V Y  +    
Sbjct: 295 -EQITEPVRIFAKIRYNHKGAWCTVERTGEDEIVCTFDEPIRAATPGQAVVLYDGE---- 349

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 350 YVLGGGTI 357


>gi|253995996|ref|YP_003048060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera mobilis JLW8]
 gi|253982675|gb|ACT47533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera mobilis JLW8]
          Length = 369

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 126/384 (32%), Positives = 196/384 (51%), Gaps = 25/384 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++L+K  +  ++VV +SGGVDSSV A LLK+ GY+V G+ ++ +      +    C + Q
Sbjct: 1   MNLNKA-QKKKIVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDE---YCSSKQ 56

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA  V D I +     ++ + +++ V   F S Y AG TP P + CN  +KF   L 
Sbjct: 57  DLIDAVSVADKIGIDIEAVNFSKEYKDRVFANFLSEYQAGRTPNPDILCNAEIKFKAFLD 116

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               +GAD++ATGHY + R      GK    + +  D  +DQSYFL+   Q QL    FP
Sbjct: 117 HAMGMGADLIATGHYAQVRENPLQPGK--FQLLKADDGSKDQSYFLYRLNQAQLSKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG   K  VR++AR  GL  A+K DS  ICF+ +  + + + +        GD+    G+
Sbjct: 175 LGQHLKREVREIARSAGLINAEKKDSTGICFIGERPFQEFLSKYLPRE--PGDMKTPEGK 232

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           ++GRH G++ YT+GQR+GL +       GEP FV   D   + +IV        L    +
Sbjct: 233 LVGRHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAGKDMEKNELIVVQGHEHPLLLNDGL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362
              +++W+     E+     +    K R  Q   P  V + + D V + F + +  +  G
Sbjct: 293 KAGQLHWIS----EENPTTNWVYAAKTRYRQPDAPCEVDRISSDEVEIKFGQKQWAITPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q+ V Y S+      LGGGII+G+
Sbjct: 349 QSAVVYESNV----CLGGGIITGA 368


>gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ultunensis DSM 16047]
          Length = 375

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 187/384 (48%), Gaps = 25/384 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D I + +Y  ++E+ + + V   F + Y  G TP P V CN  +KF   L     L
Sbjct: 60  KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +A GHY ++      D      M RP D  +DQ+YFL   +Q Q+  + FPL ++ 
Sbjct: 120 DADYIAMGHYAKTVK----DKNGIVHMMRPKDGNKDQTYFLSQLSQDQIQKVIFPLANLT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   +       A  G +V  +G+++G H
Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233

Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
            G++ YTIGQR+GLG+   +    P FVV  D   + +IV        L    +   +++
Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASHLKASDMS 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367
           +       D       C  K R  Q  + V V     D+   V F++    V  GQA V 
Sbjct: 294 FFTGQPDHDF---EMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  +      LGGG I  + + D 
Sbjct: 351 YNGE----ECLGGGNIDAAYQEDK 370


>gi|238897773|ref|YP_002923452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465530|gb|ACQ67304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 364

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 27/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N    +VVV MSGGVDSSV A LL   GY V G+ ++ +        +  C A  D+ D 
Sbjct: 3   NKNSKKVVVGMSGGVDSSVAAYLLLEQGYQVCGLFMKNWEEDDN---ELYCAAAVDLSDT 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
           + VCD +N+  +  ++   + N V   F + Y AG TP P + CN+ +KF   L    Q 
Sbjct: 60  QAVCDKLNIELHTVNFSAEYWNQVFTLFLAEYRAGRTPNPDILCNKEIKFKAFLEFALQD 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY+R +   G     +  + R +D  +DQSYFL+   QQQL +  FP+G +
Sbjct: 120 LGADYIATGHYVRHQSNNG-----QHFLLRGIDENKDQSYFLYTIGQQQLANCLFPIGGL 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           KK  VRD+A+++ L  A K DS  ICFV + K+ D + +  +G   +G I+ ++G+ +G+
Sbjct: 175 KKSEVRDIAKKLNLVNAQKKDSTGICFVGERKFRDFLSQYLSG--QKGSIMTVDGKHIGQ 232

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           H G++ +T+GQR+GLG+   +     P +VV  D  ++ ++V        L    +  ++
Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKGEGEAPWYVVDKDIKNNILLVAQNPLHPLLMSKGLIAQQ 292

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
           ++W+            ++C +K R  Q+ +   +    D   V FE     V  GQ+ VF
Sbjct: 293 LHWVN----SPPTKSPYRCVLKTRYRQEDIRAEIIVEQDQSVVRFEHPVSSVTPGQSVVF 348

Query: 368 YTSDSNEARVLGGGIISG 385
           Y ++      LGGGII  
Sbjct: 349 YQNE----LCLGGGIIEK 362


>gi|84500833|ref|ZP_00999068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola batsensis HTCC2597]
 gi|84390900|gb|EAQ03318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola batsensis HTCC2597]
          Length = 382

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/386 (50%), Positives = 255/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   + LNSL   K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDRTSDLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLDADCMATGHYIQRKM-----GAAGAELHSAADAARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLSFLRFPLGHLASKAETRALAAKYGLPVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV  +G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD ++ RV+VGP+E L
Sbjct: 236 AEPGEIVDTSGRVLGHHEGVIHYTIGQRRGLGIGGLSDPLYVVRLDVDARRVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              ++ +REINWLG+G F D      +  VK+RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRQVPVREINWLGEGAFTDQP--EREISVKVRSTRPPREAILRPVSDTEAVVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++   R+LGGG I
Sbjct: 354 GVSPGQACVFY--ETGGTRILGGGWI 377


>gi|224542883|ref|ZP_03683422.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524213|gb|EEF93318.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM
           15897]
          Length = 376

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 194/384 (50%), Gaps = 27/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            RVV+ +SGGVDS+V A LLK+ GY+VI V ++ ++S   +   G+       C   +D 
Sbjct: 2   KRVVLGLSGGVDSAVAAYLLKKQGYEVICVFMRNWDSSLNNDILGNPTNDDDVCPQEKDY 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   + +     D+ + + + V   F   YA G TP P + CN+ +KF   L   
Sbjct: 62  QDAQAVATHLGLEIRRVDFIKEYWDQVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + + AD +ATGHY R     G    +  +M R +D  +DQ+YFL    Q QL +  FP+G
Sbjct: 122 KSIDADYIATGHYARVVHTEG----KESVMLRGVDNNKDQTYFLCQLNQNQLNNSLFPIG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
           ++ K  VR +A E+ L +A K DS  ICF+ +  + + +K      A  G +V  ++ ++
Sbjct: 178 ELTKPEVRRIAEELDLPVAHKKDSTGICFIGERDFREFLKNYIP--AKSGKMVDIVSKKV 235

Query: 253 LGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREI 308
           +G H GI+ YTIGQR+GLG+   GEP FVV  D + + + +   +    L  H   + ++
Sbjct: 236 IGDHQGIMYYTIGQRKGLGIGGNGEPWFVVGKDYDKNILYIAQGDSNKWLLSHGALITDV 295

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NW+     +      + C  K R  Q    V +   D+  +YV F+K    V  GQA VF
Sbjct: 296 NWVS----KTKPEGEYDCTAKFRYRQKDNDVSLHFIDETTLYVTFKKPIKAVTPGQAAVF 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391
           Y  D      LGGG I    +   
Sbjct: 352 YDGDV----CLGGGTIDKVYKDGK 371


>gi|86138410|ref|ZP_01056984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. MED193]
 gi|85824935|gb|EAQ45136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. MED193]
          Length = 381

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDVIGVTLQLY+   A
Sbjct: 1   MALDTDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVIGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++  GD+G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM--GDNGAE---LHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYTSVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +VIVGP+E L
Sbjct: 236 AEPGEIVHADGRVLGTHTGVIHYTIGQRRGLGIGGLTEPLYVVRLDVDKKQVIVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F+      +   VK+RS++ P    ++  +     V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFDSR--QEWNVMVKVRSTRPPREAIIRPLSATTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY SDS  +R+ GGG I
Sbjct: 354 GVSPGQACVFYDSDS--SRIFGGGWI 377


>gi|307265214|ref|ZP_07546773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919836|gb|EFN50051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 387

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 212/372 (56%), Gaps = 14/372 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDAR 77
           + RV + MSGGVDSSV A LLK++G+DVIG+T++++     KA     SCC+ +   DA+
Sbjct: 27  NNRVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHAAKAFDSDKSCCSLRATQDAK 86

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + + V HY  D+ E F + ++  F + Y  G TP PCV CNR +KF +LL    +LG
Sbjct: 87  KVAEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 146

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R      D+  +R ++ + +D  +DQSY L+  TQ+QL    FPLG+ KK
Sbjct: 147 AYYIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 203

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R LA  + L +A K +SQ+ICF+    Y   +KR        G+   ++G+ LG H 
Sbjct: 204 EEIRALAEGLKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHK 263

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQRRGLG++   PL+VV +D  ++ V+VG +E +    +     N++      
Sbjct: 264 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 319

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    K   KIR +       ++   +D V V F K +  +  GQ+ VFY  D     
Sbjct: 320 EKLKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 375

Query: 377 VLGGGIISGSKR 388
           V+GGGII    R
Sbjct: 376 VVGGGIIEKKVR 387


>gi|260549713|ref|ZP_05823930.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624]
 gi|260407230|gb|EEX00706.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624]
          Length = 377

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 199/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY  R+       G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236

Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+         G+  A     FV++ D  ++R++VG       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGMKGAAEGAWFVLHKDVANNRLVVGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     +    +G +C  K R  Q      V  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QHIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|258515487|ref|YP_003191709.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779192|gb|ACV63086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 362

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
           K  +VVVAMSGGVDSSV AALL  +GY++ GVT+Q+++     A+  +G CC+   V DA
Sbjct: 2   KGKKVVVAMSGGVDSSVTAALLLEEGYEITGVTMQIWDPEQKDATGEEG-CCSLSAVDDA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + +N+ +YV ++ ++F  +VI  F + Y  G TP PC+ CNR VKF+ LL     +
Sbjct: 61  RRVANILNIPYYVLNFRKQFEKSVIDYFLAEYLEGRTPNPCIACNRYVKFTALLQKAISI 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R I+ +  D+++DQ+Y L+  TQ Q+     PLG   
Sbjct: 121 GADFIATGHYARLGYSK---EYNRYIIKKSADIKKDQTYVLYNLTQNQIAHTLMPLGVYT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE VR++A +  L +A K +SQ+ICFV    Y   +++        G  + + G+++G H
Sbjct: 178 KEQVREMALKYCLPVAAKPESQEICFVPDNDYRSFIQKKTDAEIKPGLFLDIQGKVIGEH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI  YT GQRRGLG+A GE ++VV +D   + V +G  E +    +   + N++     
Sbjct: 238 RGIPYYTYGQRRGLGIAAGERMYVVDIDPARNTVTLGYEEDIFTRELISGQNNFIAI--- 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            D ++   +   KIR +  P    +    +D V V F++ +  V  GQA VFY+ D+   
Sbjct: 295 -DKLIAPMEVEAKIRYNSKPYKAVIFSEGEDRVKVVFDEPQRSVTPGQAVVFYSGDT--- 350

Query: 376 RVLGGGII 383
            V+GGG I
Sbjct: 351 -VIGGGTI 357


>gi|312795152|ref|YP_004028074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166927|emb|CBW73930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [Burkholderia rhizoxinica HKI 454]
          Length = 380

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 180/385 (46%), Gaps = 27/385 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+ MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C + QD  D   V
Sbjct: 3   KQRVVIGMSGGVDSSVAAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSSRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++  ++++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAQYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R         R  + + +D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRRI-----GERFELLKALDSSKDQSYFLHRLNQSQLSRTLFPLGELPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  +   + R        G +   +G+++G H G+
Sbjct: 175 VREIAAQIGLPNAAKKDSTGICFIGERPFRTFLNRYLP--TRPGPMRTPDGKVVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT+GQR+G+G+       GEP FV   D   + + V        L    +     +W+
Sbjct: 233 AFYTLGQRKGIGLGGSRDGSGEPWFVAGKDMAGNTLYVVQGHDHPWLLSSTLQAENASWI 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                  A  DG  C  K R  Q       Q   D    + F +S+  V  GQ+ V Y  
Sbjct: 293 AGA----APQDGHSCTAKTRYRQQDAACTFQHAPDRHFALHFAQSQWAVTPGQSAVLYDG 348

Query: 371 DSNEARVLGGGIISGSKRSDAVEES 395
           D      LGGGII  +        +
Sbjct: 349 DV----CLGGGIIGATSAPSTPAAA 369


>gi|284047421|ref|YP_003397760.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidaminococcus fermentans DSM 20731]
 gi|283951642|gb|ADB46445.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidaminococcus fermentans DSM 20731]
          Length = 356

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 145/367 (39%), Positives = 207/367 (56%), Gaps = 14/367 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           M+ ++AMSGGVDSSV A L++  GYD IG  ++LYN+  A      +CC+  DV DAR V
Sbjct: 1   MKALIAMSGGVDSSVSAKLMQDAGYDCIGCNMKLYNNPDAGYCSTKTCCSLSDVEDARSV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  + +  YVF+Y E F++ V+  FA SY  G TP PC+DCN+ +KF  L    R+LG D
Sbjct: 61  CARLGMPFYVFNYTEEFKHDVMEKFARSYTLGHTPNPCIDCNKFLKFGALYQRARELGCD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R R    ++   +  + + +D ++DQSY L+  TQ+QL    FPLG   K  
Sbjct: 121 CVVTGHYARIR---KNETTGKYELLKALDPKKDQSYVLYNLTQEQLAHTCFPLGGYHKTH 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R++A E G   + K DSQDICFV  G+Y D V+RI       G  + L G ++G+H GI
Sbjct: 178 TREIAEENGFINSHKPDSQDICFVPNGQYTDAVQRILDYRPQPGPFLDLEGNVIGQHRGI 237

Query: 260 INYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I YT+GQ + LG+   + PL+VV +D   + ++VGP E+L   +  + E NW+      +
Sbjct: 238 IYYTLGQHKHLGLNQPDFPLYVVKIDPKKNAIVVGPSEALFSRKASVGEANWISG----E 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +C VK+R  QD  P  V     D   + F++ +  +  GQA V Y  +     V
Sbjct: 294 VPAGPVRCQVKVRYRQDAQPATVTPTGKDTFTIQFDEPQRAITPGQAAVLYDGEV----V 349

Query: 378 LGGGIIS 384
           LGGG I 
Sbjct: 350 LGGGTIE 356


>gi|84686908|ref|ZP_01014792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665105|gb|EAQ11585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2654]
          Length = 381

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +    R+NSL   K   + RVVVAMSGGVDSSVVAA LKR+GYDVIGVTLQLY+   A
Sbjct: 1   MSLDTEIRVNSLGFAKPESETRVVVAMSGGVDSSVVAAKLKREGYDVIGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFREAVIEEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL+  + L AD +ATGHYI+       DG     + R  D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLATAKDLDADCMATGHYIQRF-----DGDAGPELHRAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K+  R LARE GL++ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLSFLRFPLGHLKTKDETRALAREFGLEVADKPDSQDICFVPDGNYAGVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LGRH+G+I+YTIGQRRGLG+  + +PL+VV LD  + +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLGRHDGVIHYTIGQRRGLGIGGLSDPLYVVRLDTETRQVVVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F       +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFTSQ--GEWHLSVKVRSTRPPREAVIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  DS  +R+ GGG I
Sbjct: 354 GVSPGQACVFYAPDS--SRIFGGGWI 377


>gi|225570688|ref|ZP_03779711.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM
           15053]
 gi|225160515|gb|EEG73134.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM
           15053]
          Length = 361

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 203/368 (55%), Gaps = 15/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   +    +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEERAVQEENGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   + + +YV ++ + F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 62  RRVAAQLGIPYYVMNFRQEFKEHVIDYFVDEYTHGRTPNPCIACNRYVKWESLLKRSMDI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R      +    R  +       +DQ+Y L+  TQ+QL     P+G  +
Sbjct: 122 GADYIATGHYARIEQLPNE----RYALKVSATDTKDQTYALYNLTQEQLRRTLMPVGMYE 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE +R +A  +GL++A+K DSQDICFV  G Y   +++     +L G+ V  +G ++G H
Sbjct: 178 KEEIRRIAGSLGLEVANKPDSQDICFVPDGDYASYIEKEAGVKSLPGNFVTSDGTVVGTH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI++YT+GQR+GLG+++G P+FV+ +   ++ ++VG  E      +    +N++  G  
Sbjct: 238 KGIVHYTVGQRKGLGLSLGHPVFVLDIRPGTNEIVVGSNEESMSRYVRADNVNFMSVG-- 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              + +  + + KIR +        ++   D +   F++ +     GQA V Y  +    
Sbjct: 296 --GLPEKKRVWAKIRYNHRGAWCTAEKTGPDEIVCTFDEPQRAATPGQAVVLYDGE---- 349

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 350 YVLGGGTI 357


>gi|167586157|ref|ZP_02378545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ubonensis Bu]
          Length = 382

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 180/388 (46%), Gaps = 29/388 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L   R+    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRRLVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369
                  +   DGF C  K R  Q        +   +   + F+ ++  V  GQ+ V Y 
Sbjct: 292 TAG----EPPADGFACGAKTRYRQADAGCTFARAGGERFSLTFDDAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIIS--GSKRSDAVEES 395
            +      +GGGII    + +      +
Sbjct: 348 GEI----CVGGGIIEFAATGQPGQAAPA 371


>gi|254283074|ref|ZP_04958042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR51-B]
 gi|219679277|gb|EED35626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR51-B]
          Length = 363

 Score =  471 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 26/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDSSV A LL+  GY V G+ ++ +     ++    C A +D+ DA  V
Sbjct: 6   NTKVIVGMSGGVDSSVSALLLRDAGYRVEGLFMKNWEEDDGTE---YCTAKEDLADASSV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +  ++   + + V   F S Y AG TP P + CNR +KF   +     LGAD
Sbjct: 63  ADRLGIPLHEANFAAEYWDNVFEHFLSEYRAGRTPNPDILCNREIKFRAFIDYATLLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R   +     + +  + + +D  +DQSYFL      +L    FP+G++ K  
Sbjct: 123 CIATGHYVRRGHF-----ESKATLLKGLDTNKDQSYFLHQVGNVELGRTLFPVGEIDKPR 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E  L  A K DS  ICF+ + ++ D +++     A  G+I  L+G+ +G+H G+
Sbjct: 178 VRQLAEENQLVTAKKKDSTGICFIGERRFKDFLRQYLP--AQPGNIEDLDGRTIGQHIGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +TIGQR+GLG+         P +VV  D + + ++V       +L   R+   +I W+
Sbjct: 236 MYHTIGQRQGLGIGGLADHDEAPWYVVGKDLDRNVLLVAQGNDHPALFSSRLLTGDIFWI 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +      +   KIR  Q      +   D G  V F+  +  V  GQ+ VFY  +
Sbjct: 296 SG----EPPAPSVQLSAKIRYRQPDQDCHLVAIDGGFEVVFDTPQRAVTPGQSVVFYDGE 351

Query: 372 SNEARVLGGGIISGS 386
                 LGGG+I  S
Sbjct: 352 C----CLGGGVIEDS 362


>gi|167854995|ref|ZP_02477769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis 29755]
 gi|219870378|ref|YP_002474753.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus parasuis SH0165]
 gi|167853843|gb|EDS25083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis 29755]
 gi|219690582|gb|ACL31805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis SH0165]
          Length = 383

 Score =  471 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 29/388 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             L    L +N K  +V+  MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 11  PALTDEQLAENAK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 67  CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKF 126

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGA+ +ATGHY+R          ++  + R +D  +DQSYFL+  ++QQ+
Sbjct: 127 KAFLEYAAEDLGANFIATGHYVRRPPL-----DQQPKLLRGLDSNKDQSYFLYTLSEQQV 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  GDI
Sbjct: 182 AQSLFPVGDIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQAGDI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES--- 297
             ++GQ++GRH+G++ +T+GQR+GLG+           +VV  D  ++ +IV   +    
Sbjct: 240 KTVDGQVIGRHDGLMYHTLGQRKGLGIGGVKGASENAWYVVEKDLVNNVLIVAQGQDNSA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +   +++W+        + +  +C VK R  Q  +   +Q  DD  + V F++ +
Sbjct: 300 LLSSGLIASQLHWVD----RQPIREKLRCTVKTRYRQADILCEIQPLDDETIRVIFDEPQ 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384
           + V  GQ+ VFY  +      LGGGII 
Sbjct: 356 IAVTPGQSAVFYQGEV----CLGGGIIE 379


>gi|186477293|ref|YP_001858763.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phymatum STM815]
 gi|205811492|sp|B2JGI9|MNMA_BURP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|184193752|gb|ACC71717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia phymatum STM815]
          Length = 384

 Score =  471 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/395 (32%), Positives = 179/395 (45%), Gaps = 32/395 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLGD+ K 
Sbjct: 119 ETIATGHYARVREIDG-----RFELLKARDHTKDQSYFLHRLNQAQLSKTLFPLGDIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G
Sbjct: 174 KVREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKTVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L    +     +W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIESNTLYVAQGHDHPWLLSRTLTAGNTSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----VQRNDDGVY-VDFEKSEVGVASGQA 364
           +     E     G  C  K R  Q              + + ++ + F  ++  V  GQ+
Sbjct: 292 VAGHAPE----VGHACAAKTRYRQADAACTFGAAGANADPNALFSLHFADAQWAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
            V Y  D      LGGGII  +  +  V       
Sbjct: 348 AVLYDGDV----CLGGGIIEHAATAQPVTRQPQKA 378


>gi|292492808|ref|YP_003528247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
 gi|291581403|gb|ADE15860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
          Length = 367

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 183/374 (48%), Gaps = 27/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A  L+  GY + G+ ++ +           C   QD  DA  V  
Sbjct: 5   KVVVGLSGGVDSSVAALQLQHQGYPISGLFMKNWVDFADESE---CTIAQDREDAHAVTS 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L+   +LG  ++
Sbjct: 62  LLGISLHEANFAMEYWDQVFRYFLDEYRLGRTPNPDILCNREIKFKAFLNHALELGNPLI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      +  + R  + +  D  +DQSYFL+   Q+QL    FPLG+++K  VR
Sbjct: 122 ATGHYARI-----EQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A    L   +K DS  ICF+ + ++ + + R     A  G++    G+++G+H+G++ 
Sbjct: 177 RIAAGANLPNHNKKDSTGICFIGERRFKEFLGRYLP--AQPGEMRTPQGELIGKHDGLMY 234

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           YT+GQRRGLG+       G P FVV  D   + + V   G    L+   +   +++W+  
Sbjct: 235 YTLGQRRGLGIGGRKNSNGAPWFVVGKDLPRNTLYVAQGGDHPWLKSQTLEANQLHWVAG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                     + C  K R  Q   P  + +  +  + V F+  +  V  GQA VFY  D 
Sbjct: 295 ----QPPSLPYLCAAKTRYRQADQPCTLTKITNGRIKVVFDSPQYAVTPGQAVVFYRRD- 349

Query: 373 NEARVLGGGIISGS 386
                LGGG I+ +
Sbjct: 350 ---ECLGGGTITTT 360


>gi|167745698|ref|ZP_02417825.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662]
 gi|167655010|gb|EDR99139.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662]
          Length = 356

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 142/365 (38%), Positives = 202/365 (55%), Gaps = 16/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++   +       G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R  + R    E+DQ+Y L+  TQ QL     P+G+  K+ 
Sbjct: 124 YIATGHYARIEKLS----NGRYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A ++ L +A K DSQDICFV  G Y D ++         G+ V ++G ILG H GI
Sbjct: 180 IREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YT+GQRRGLG+++ +P +VV +DK  + V++G  E L    +Y   +N +     ED 
Sbjct: 239 VCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIED- 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              G +   K+R +    P  V  +  D + V F++ +  V  GQA VFY  D     V 
Sbjct: 298 ---GMRFQAKVRYNHRGAPCTVSMDGKDRIKVLFDEPQRAVTPGQAVVFYDGD----YVA 350

Query: 379 GGGII 383
           GG  I
Sbjct: 351 GGATI 355


>gi|158425974|ref|YP_001527266.1| tRNA-specific 2-thiouridylase MnmA [Azorhizobium caulinodans ORS
           571]
 gi|172047846|sp|A8HVS0|MNMA_AZOC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158332863|dbj|BAF90348.1| TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azorhizobium caulinodans ORS 571]
          Length = 390

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 214/385 (55%), Positives = 264/385 (68%), Gaps = 5/385 (1%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+  +P   RVVVAMSGGVDSSVVA LL R G+DV+GVTLQLY+  +A++RKG+CCAGQD
Sbjct: 7   DIGTDPASTRVVVAMSGGVDSSVVAGLLARAGFDVVGVTLQLYDQGEAARRKGACCAGQD 66

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +YDAR V D + + HYV DYE RFR  VI  FA SYAAG TP+PCVDCNRTVKF DLL+ 
Sbjct: 67  IYDARDVADRLGIPHYVLDYESRFREEVIERFADSYAAGFTPIPCVDCNRTVKFRDLLAT 126

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGA VLATGHY+ SR         RR + R  +  RDQSYFL+ATTQ Q   LRFPL
Sbjct: 127 AEDLGASVLATGHYVASRALPD----GRRGLFRAAEENRDQSYFLYATTQAQATKLRFPL 182

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G M+K  VR LA E+GL +ADK DSQDICFV  G Y +VV+R+       GDIVHL+G++
Sbjct: 183 GGMRKSDVRALAAELGLPVADKPDSQDICFVPGGDYAEVVERLRPEAGEAGDIVHLDGRV 242

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRH G+++YTIGQR+GLG++  EPL+VV +D     V VGPRE+L V  I L +INWLG
Sbjct: 243 LGRHRGVMHYTIGQRKGLGISTPEPLYVVAIDAARREVRVGPREALAVRSIGLTDINWLG 302

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371
           D    DA       +VK+RS++ P P  + R+ DG   V+    E GVA GQACVFY + 
Sbjct: 303 DVPLLDACAAEQDIYVKVRSTRPPTPARLLRDADGAPTVELLAGEEGVAPGQACVFYDAA 362

Query: 372 SNEARVLGGGIISGSKRSDAVEESL 396
           S  AR+LGGG I  ++R+     + 
Sbjct: 363 SGAARLLGGGTIVRAERAGRHLAAA 387


>gi|329767202|ref|ZP_08258729.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341]
 gi|328836869|gb|EGF86516.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341]
          Length = 370

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/383 (33%), Positives = 195/383 (50%), Gaps = 21/383 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ +  +     +G C A +D  D  
Sbjct: 2   NSNKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVI 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +VC+ +++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L     LG
Sbjct: 59  KVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R +   G+     R+M R +D  +DQ+YFL    Q Q+ ++ FP+G+++K
Sbjct: 119 ADYVATGHYARVKDVDGE-----RLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR +A E GL  A K DS  ICF+ +  + + + +     A  G +V L+G I G H 
Sbjct: 174 KDVRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNIRGEHI 231

Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+++YTIGQR GLG+       GE  F    D  ++ + V      E         +   
Sbjct: 232 GLMHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLAS-SL 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               ++   + F C  K R  Q    V V+   D+ V V +++    V  GQA VFY  D
Sbjct: 291 SFTTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350

Query: 372 SNEARVLGGGIISGSKRSDAVEE 394
                 LGG II    +     +
Sbjct: 351 V----CLGGAIIDEVYKDGKKLQ 369


>gi|254510076|ref|ZP_05122143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium KLH11]
 gi|221533787|gb|EEE36775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium KLH11]
          Length = 381

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDAKTPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GPNGSELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++L +HNG+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLAQHNGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDKKQVVVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD  F     D +   VK+RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRTVPVREINWLGDAPFSSQ--DEWHVSVKVRSTRPPREAIIRPLSDTTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  ++  +R+ GGG I
Sbjct: 354 GISPGQACVFY--ETGGSRIFGGGWI 377


>gi|291613422|ref|YP_003523579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583534|gb|ADE11192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
          Length = 361

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 192/378 (50%), Gaps = 27/378 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ + + VVV MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C + QD+ D
Sbjct: 2   QSNRKITVVVGMSGGVDSSVTALLLKEQGYEVIGLFMKNWEDDDDSE---YCSSRQDLID 58

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V DTI +     ++ + +++ V   F   Y AG TP P + CN  +KF   L    +
Sbjct: 59  AVSVADTIGIPIEAVNFAKEYKDRVFNYFLREYEAGRTPNPDILCNSEIKFKAFLDHAIR 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGA+ +ATGHY + R   G        + +  D  +DQSYFL    Q QL    FPLGD+
Sbjct: 119 LGAEKIATGHYAKVREQDGA-----FQLLKADDDSKDQSYFLHRLNQHQLSKSMFPLGDI 173

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++AR+  L  A K DS  ICF+ +  + + + R        GD+V   G+++G+
Sbjct: 174 PKSKVREIARQHNLSNAAKKDSTGICFIGERPFREFLNRYLP--TKPGDMVTPEGKVMGQ 231

Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLRE 307
           H G+  YT GQR+GLG+       GEP FV   D  ++R  V+ G     L   ++   +
Sbjct: 232 HMGLSFYTYGQRQGLGIGGGKDSSGEPWFVAGKDMANNRLLVVQGHDHPLLLKPQLDALD 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366
           ++W+GD     A         K R  Q      +  N  D  +  F++++  V  GQ+ V
Sbjct: 292 MHWIGDH----APDTTRDYAAKTRYRQQDAACRISINAPDTAHFSFDEAQWAVTPGQSVV 347

Query: 367 FYTSDSNEARVLGGGIIS 384
            Y  +      LGGGII+
Sbjct: 348 AYDGEI----CLGGGIIA 361


>gi|152981022|ref|YP_001352063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janthinobacterium sp. Marseille]
 gi|205816857|sp|A6SUW6|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 372

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 179/380 (47%), Gaps = 27/380 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C   QD  DA  V
Sbjct: 3   KKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDAASV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + V     ++   +++ V   F   Y AG TP P V CN  +KF   L     LGAD
Sbjct: 60  ADVVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMLLGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R R         R  + + +D  +DQSYFL    Q QL    FPLG+++K  
Sbjct: 120 MIATGHYARVREVTSGPDAGRVELLKAVDASKDQSYFLHRLNQAQLAKTLFPLGEIRKTE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++ L  A K DS  ICF+ +  + + + R  +     G +    G I+G H G+
Sbjct: 180 VRKIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLSY--QPGPMKTPEGVIVGEHVGL 237

Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
             YT+GQR+G+G+             EP +V   D  ++ + +        L    +   
Sbjct: 238 SFYTLGQRKGIGLGGMKSHKNTDGNSEPWYVARKDVATNTLYIVQGHDHPWLLSSELSAG 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +++W+      + +        K R  Q  V    + + DG  + F   +  V  GQ+ V
Sbjct: 298 QMSWVAGSPPSEEL-----VSAKTRYRQADVACSQRSDADGFSLAFAAPQWAVTPGQSAV 352

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y  D      LGGGII+ S
Sbjct: 353 LYQGDV----CLGGGIINTS 368


>gi|167756778|ref|ZP_02428905.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402]
 gi|237734496|ref|ZP_04564977.1| tRNA-specific 2-thiouridylase mnmA [Mollicutes bacterium D7]
 gi|167702953|gb|EDS17532.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402]
 gi|229382316|gb|EEO32407.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. D7]
          Length = 377

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/389 (33%), Positives = 204/389 (52%), Gaps = 27/389 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            RVV+ +SGGVDS+V A LLK  GYDVIGV ++ ++S+  +   G+       C   +D 
Sbjct: 3   KRVVLGLSGGVDSAVAAYLLKEQGYDVIGVFMRNWDSQLNNDILGNPTNDNDICPQEEDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V + + +     D+ + + + V   F   Y  G TP P + CN+ +KF   L   
Sbjct: 63  NDAKAVAECLGIPIKRVDFIKEYWDHVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLDFA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + L AD +ATGHY + + Y G D     +M + +D  +DQ+YFL    QQQL +  FPLG
Sbjct: 123 KTLNADYIATGHYAQVKHYQGAD----SVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLG 178

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ K  VR +ARE+ L +ADK DS  ICF+ +  + + ++      A  G +V +  G +
Sbjct: 179 EIDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQNYIP--AQAGKMVDIETGNV 236

Query: 253 LGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           +G H+GI+ YTIGQR+GLG+   G+  FVV  D + + + +     ++ L      + ++
Sbjct: 237 IGDHSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQGDQKDWLYSTGALITDV 296

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
           NW+         +D   C  K R  Q   P+ ++  ++D VY+ F+K    V  GQA VF
Sbjct: 297 NWIA----STKPIDKIACNAKFRYRQPDNPIQLEFIDEDTVYLTFDKPIKAVTPGQAAVF 352

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y  D      LGGG I    +     + L
Sbjct: 353 YDGDI----CLGGGTIETVYKDGQPIKYL 377


>gi|241889855|ref|ZP_04777153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemella haemolysans ATCC 10379]
 gi|241863477|gb|EER67861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemella haemolysans ATCC 10379]
          Length = 370

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 195/383 (50%), Gaps = 21/383 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ +  +     +G C A +D  D  
Sbjct: 2   NSNKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVI 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +VC+ +++ +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L     LG
Sbjct: 59  KVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R +   G+     R+M R +D  +DQ+YFL    Q Q+ ++ FP+G+++K
Sbjct: 119 ADYVATGHYARVKDVDGE-----RLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR +A E GL  A K DS  ICF+ +  + + + +     A  G +V L+G + G H 
Sbjct: 174 KDVRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNVRGEHI 231

Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+++YTIGQR GLG+       GE  F    D  ++ + V      E         +   
Sbjct: 232 GLMHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLAS-SL 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               ++   + F C  K R  Q    V V+   D+ V V +++    V  GQA VFY  D
Sbjct: 291 SFTTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350

Query: 372 SNEARVLGGGIISGSKRSDAVEE 394
                 LGG II    +     +
Sbjct: 351 V----CLGGAIIDEVYKDGKKLQ 369


>gi|161525855|ref|YP_001580867.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC
           17616]
 gi|189349424|ref|YP_001945052.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC
           17616]
 gi|205811411|sp|A9AH63|MNMA_BURM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160343284|gb|ABX16370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans ATCC 17616]
 gi|189333446|dbj|BAG42516.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Burkholderia multivorans ATCC 17616]
          Length = 381

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      +   +GF C  K R  Q        +   +   + F  ++  V  GQ+ V Y 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 348 GEI----CLGGGIIE 358


>gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans]
 gi|205816908|sp|A4G213|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 372

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 119/380 (31%), Positives = 178/380 (46%), Gaps = 27/380 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C   QD  DA  V
Sbjct: 3   KKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDAASV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + V     ++   +++ V   F   Y AG TP P V CN  +KF   L     LGAD
Sbjct: 60  ADVVGVDIEAVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAMLLGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R R         +  + + +D  +DQSYFL    Q QL    FPLG+++K  
Sbjct: 120 MIATGHYARVREVTSGPDAGQVQLLKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIRKTE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++ L  A K DS  ICF+ +  + + + R  +     G +   +G I+G H G+
Sbjct: 180 VRKIAEQLQLPNASKKDSTGICFIGERPFREFLNRYLSY--QPGPMKTPDGTIVGEHVGL 237

Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
             YT+GQR+G+G+              P +V   D  ++ + +        L    +   
Sbjct: 238 SFYTLGQRKGIGLGGMKTHKNTDGNSGPWYVARKDVANNTLYIVQGHDHPWLLSSALSAG 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +++W+      + +        K R  Q  V        D + + F+  +  V  GQ+ V
Sbjct: 298 QMSWVAGRAPSEEL-----VAAKTRYRQADVACSQHATADNLALAFDTPQWAVTPGQSAV 352

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y  D      LGGGII+ S
Sbjct: 353 LYQGDV----CLGGGIITAS 368


>gi|114766932|ref|ZP_01445852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelagibaca bermudensis HTCC2601]
 gi|114540839|gb|EAU43901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. HTCC2601]
          Length = 380

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 200/382 (52%), Positives = 258/382 (67%), Gaps = 12/382 (3%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +A  LNSL L K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A  +K
Sbjct: 4   DAPTLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY  G TP+PC+ CN  V
Sbjct: 64  GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL   + L AD +ATGHYI+    VGD G     +    D  RDQSYFLF+TT +Q
Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQR--MVGDQGAE---LHSAADANRDQSYFLFSTTPEQ 178

Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           L  LRFPLG +K K   R+LA + GL +ADK DSQDICFV  G Y  V++++  G A  G
Sbjct: 179 LDYLRFPLGHLKSKAETRELAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD ++ +VIVGP+E L   +
Sbjct: 239 EIVHADGRVLGEHRGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDNKQVIVGPKEMLATRK 298

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           + +REINWLGD  F     + +   VK+RS++ P    V+  ++    V+   +E GV+ 
Sbjct: 299 VPVREINWLGDAPFTSR--EEWHLSVKVRSTRPPREAIVRPISETEAEVELVVAEEGVSP 356

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACVFY  DS  +R+ GGG I
Sbjct: 357 GQACVFYDPDS--SRIFGGGWI 376


>gi|165975614|ref|YP_001651207.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|205811090|sp|B0BS63|MNMA_ACTPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|165875715|gb|ABY68763.1| tRNA(5-methylaminomethyl-2-thiouridylate)methyltransferase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 389

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 211/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  D      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGDV----CLGGGVIE 385


>gi|114332296|ref|YP_748518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas eutropha C91]
 gi|122313046|sp|Q0ADM9|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 361

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 27/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ +      +    C + +D  DA  V D
Sbjct: 5   RVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNWEDDDTDE---YCSSRKDFLDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++     ++   +R  V   F + Y AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  ILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDHALALGADWI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     +  + +  D  +DQSYFL+   QQQL    FP+G + K  VR
Sbjct: 122 ATGHYAQVHEING-----QFQLLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGHLYKREVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL  + K DS  ICF+ +  + + + R        G+I  L+GQI+G H G++ 
Sbjct: 177 KIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLP--VDPGEIHTLDGQIVGEHQGLMY 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+        +P FV   D  ++ + V       +L    +   +++W+  
Sbjct: 235 YTIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADLSWISG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                + V       KIR  Q   P   ++   D   + F   + GV  GQ+ V Y    
Sbjct: 295 APPHQSWV----YAAKIRYRQTDAPCAIIRLEHDSCQIGFAAPQWGVTPGQSVVIY---- 346

Query: 373 NEARVLGGGIISGS 386
                LGGGII+ S
Sbjct: 347 ESKVCLGGGIITDS 360


>gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 369

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 205/382 (53%), Gaps = 24/382 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K+ KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++    +   G C A  D  
Sbjct: 3   NKDKKDIKVIVGVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYE 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA +VC+ I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   +
Sbjct: 60  DAVKVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAK 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD LATGHY R     G+       M R +D  +DQ+YFL   +Q Q+ D+ FP+G+
Sbjct: 120 DLGADYLATGHYARVDRSSGE-----TKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGN 174

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K+ VR +A+E  L  ADK DS  ICF+ +  + + +       A EG+IV  +G I+G
Sbjct: 175 LDKKEVRKIAKENNLATADKKDSTGICFIGERNFNEFLSNYLP--AKEGNIVDTDGNIMG 232

Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +H G++ +TIGQRRGLG+   GE  FV   D   + +IV      E L  +R+    ++ 
Sbjct: 233 KHYGLMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSS 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +      + +   F C  K R  Q  +   V+  DDG V + ++K+   V  GQA VFY 
Sbjct: 293 IS----AEGLKKEFDCTCKFRYRQKDINSHVKILDDGKVEIRYDKT-KAVTPGQAAVFYD 347

Query: 370 SDSNEARVLGGGIISGSKRSDA 391
            +      LG  II      D 
Sbjct: 348 GEV----CLGSCIIDEVYNGDK 365


>gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
          Length = 381

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 24  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 81  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 141 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 315 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 371 DDV----CLGGGVI 380


>gi|221202286|ref|ZP_03575320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2M]
 gi|221209100|ref|ZP_03582094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2]
 gi|221171004|gb|EEE03457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2]
 gi|221177860|gb|EEE10273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD2M]
          Length = 381

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      +   +GF C  K R  Q        +   +   + F  ++  V  GQ+ V Y 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 348 GEV----CLGGGIIE 358


>gi|115350645|ref|YP_772484.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria AMMD]
 gi|122323996|sp|Q0BI73|MNMA_BURCM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115280633|gb|ABI86150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria AMMD]
          Length = 384

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 29/390 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 MIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGL 232

Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L   ++    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +   DGF C  K R  Q        + + +   + F+ ++  V  GQ+ V Y  
Sbjct: 293 AG----EPPADGFSCGAKTRYRQADAACSFGRADGERFSLAFDDAQWAVTPGQSAVLYDG 348

Query: 371 DSNEARVLGGGIIS--GSKRSDAVEESLLS 398
           +      LGGGII    + +      +  +
Sbjct: 349 EI----CLGGGIIEFAATGQPGQTAPAPAA 374


>gi|259503048|ref|ZP_05745950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus antri DSM 16041]
 gi|259168914|gb|EEW53409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus antri DSM 16041]
          Length = 377

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++    +   G C A +D  D  +
Sbjct: 5   SQTRVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QLGA
Sbjct: 62  VAAKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY   +     D   R  + R  D  +DQ+YFL      QL  + FPL    K 
Sbjct: 122 DYVATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLARYTKP 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +R++A+E GL  A+K DS  ICF+ + G + + + +     A  G++  ++G+++G+H 
Sbjct: 178 QIREIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYLP--AQPGNMETVDGKVVGQHM 235

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310
           G++ YTIGQRRGLG+       EP FV+  D   + + VG     E L    +   +I+W
Sbjct: 236 GLMYYTIGQRRGLGLGGNKESNEPWFVIGKDIKKNVLYVGQGYHNEHLYATHLEASDIHW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFY 368
           + D +        F C  K R  Q  V V V+   +D  V V+F+     +  GQA  FY
Sbjct: 296 VDDVVSRFG--REFHCTAKFRYRQKDVGVTVKIAADDQMVTVNFDDPARAITPGQAVAFY 353

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LG  II  +  +    + +
Sbjct: 354 DG----QECLGSAIIDRAYNASRQLQYV 377


>gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica 257]
 gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica 257]
          Length = 381

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 24  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 81  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 141 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 315 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 371 DDV----CLGGGVI 380


>gi|126737635|ref|ZP_01753365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. SK209-2-6]
 gi|126721028|gb|EBA17732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. SK209-2-6]
          Length = 381

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/386 (49%), Positives = 252/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDNDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+  +     G++   +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRMM-----GEQGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP++ L
Sbjct: 236 AEPGEIVHSDGRVLGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKDLL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F       +   VK+RS++ P    ++   +    V+    E 
Sbjct: 296 ATRTIPVREINWLGDAPFTSQ--KEWHLKVKVRSTRPPREAIIRPLTETTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY S+   +R+ GGG I
Sbjct: 354 GISPGQACVFYASE--GSRIFGGGWI 377


>gi|167564053|ref|ZP_02356969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia oklahomensis EO147]
          Length = 409

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/423 (30%), Positives = 182/423 (43%), Gaps = 58/423 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAR 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV------------------------------FV 341
                 +   DG +C  K R  Q                                     
Sbjct: 293 AG----EPPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAA 348

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSV 399
             + +   + F++ +  V  GQ+ V Y  D      LGGGII    + R DA        
Sbjct: 349 DASGERFSLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAHAGGAPA 404

Query: 400 IGD 402
           + +
Sbjct: 405 LAE 407


>gi|300703072|ref|YP_003744674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum CFBP2957]
 gi|299070735|emb|CBJ42030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum CFBP2957]
          Length = 370

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 188/387 (48%), Gaps = 28/387 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I    G+ +G+H G
Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G     K R  Q   P  V    D  + + F +++  V  GQ+ V Y 
Sbjct: 292 VAGH----PPAEGTHLAAKTRYRQADAPCTVACATDGALALAFVEAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396
            +      LGGGII+ +  + A E ++
Sbjct: 348 GEV----CLGGGIIACAD-ALAAERAV 369


>gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 378

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 21  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 78  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 138 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 312 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 368 DDV----CLGGGVI 377


>gi|167010288|ref|ZP_02275219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica FSC200]
          Length = 378

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 21  ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 78  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 138 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 312 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 368 DDV----CLGGGVI 377


>gi|260433794|ref|ZP_05787765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417622|gb|EEX10881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 381

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/386 (49%), Positives = 251/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDTEPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              VKF DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 KERVKFKDLLETAKDLEADCMATGHYIQRKM-----GPNGPELHCAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLEFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG+H+G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L
Sbjct: 236 AEPGEIVHADGRVLGQHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDRKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F       +   VK+RS++ P    ++   D    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSQ--KEWHVSVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++  +R+ GGG I
Sbjct: 354 GVSPGQACVFY--ETGGSRIFGGGWI 377


>gi|167912477|ref|ZP_02499568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 112]
          Length = 356

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 175/372 (47%), Gaps = 30/372 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D  S+ + V        L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              DG +C  K R  Q   P       Q  D+   + F++ +  V  GQ+ V Y  D   
Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGDV-- 344

Query: 375 ARVLGGGIISGS 386
              LGGGII  +
Sbjct: 345 --CLGGGIIESA 354


>gi|172059678|ref|YP_001807330.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria MC40-6]
 gi|205811349|sp|B1YTE9|MNMA_BURA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171992195|gb|ACB63114.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria MC40-6]
          Length = 389

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 180/379 (47%), Gaps = 32/379 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 MIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L   ++    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQAC 365
                 +   DGF C  K R  Q             + + +   + F+ ++  V  GQ+ 
Sbjct: 293 AG----EPPADGFSCGAKTRYRQADAACSFGRPALGRADGERFSLTFDDAQWAVTPGQSA 348

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  +      LGGGII 
Sbjct: 349 VLYDGEI----CLGGGIIE 363


>gi|254363194|ref|ZP_04979243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia haemolytica PHL213]
 gi|153095088|gb|EDN75639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia haemolytica PHL213]
          Length = 387

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/392 (31%), Positives = 206/392 (52%), Gaps = 29/392 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L    L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 12  THFPKLTPEQLAENSK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 69

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  ++ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 70  --YCTAAAELADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKE 127

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R      D       + R +D  +DQSYFL+A  +
Sbjct: 128 IKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD-----AKLLRGLDENKDQSYFLYALNK 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 183 KQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 240

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ +IV     
Sbjct: 241 GEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHD 300

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFE 353
              L    +  +++ W+        + +  +C VK R  Q  +   +Q  DD  + V F+
Sbjct: 301 NSALLSSGLIAKQLTWVDM----QPLRENLRCTVKTRYRQADIACEIQVIDDETIRVMFD 356

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + ++ V  GQ+ VFY  +      LGGGII  
Sbjct: 357 EPQIAVTPGQSAVFYLGEV----CLGGGIIES 384


>gi|134298633|ref|YP_001112129.1| tRNA-specific 2-thiouridylase MnmA [Desulfotomaculum reducens MI-1]
 gi|172044262|sp|A4J2K1|MNMA_DESRM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134051333|gb|ABO49304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum reducens MI-1]
          Length = 367

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 14/373 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77
             RV+VAMSGGVDSSV AALL++ GYD++GVT+Q+++            CC+   V DAR
Sbjct: 4   QKRVLVAMSGGVDSSVTAALLQQQGYDIVGVTMQIWDPEVTVVGDDYVGCCSLTAVDDAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + + + +YV ++ E F   VI  F   Y  G TP PC+ CNR +KF  LL   RQ+G
Sbjct: 64  RVANVLGIPYYVLNFRELFTEKVIQYFVDEYFQGRTPNPCIACNRFIKFEALLQRARQMG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY R       +  +R  + + +D ++DQSY L+  TQ Q+     PL D  K
Sbjct: 124 FDYIATGHYARLGYS---EEFQRYTVKKALDDKKDQSYVLYGFTQDQIAHTLMPLADYTK 180

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR +A+EMGL    K +SQ+ICFV    Y + +   + G    G    L G +LG H 
Sbjct: 181 DQVRGIAKEMGLPTYSKPESQEICFVHDNNYRNFLDERSQGGIKPGPFKDLAGNVLGEHK 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGLG+A GE  +V+ +D +++ V VG  E++    +   E N++      
Sbjct: 241 GIPFYTIGQRRGLGLATGERTYVIDIDPDNNVVTVGSEEAIWGTELIASENNFI----LF 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    +   ++R +  P P  ++   +G V V F+  +  +  GQA V+Y  D     
Sbjct: 297 ENLTGPQELEAQVRYNSKPSPAIIEPYGEGLVKVTFKYPQRAITPGQAVVYYQGD----Y 352

Query: 377 VLGGGIISGSKRS 389
           ++GGG I  + + 
Sbjct: 353 LVGGGTIEKTIKQ 365


>gi|255524816|ref|ZP_05391766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|296188647|ref|ZP_06857035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|255511483|gb|EET87773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|296046911|gb|EFG86357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
          Length = 358

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 212/367 (57%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
           + +VV+ MSGGVDSSV A LLK+ GYDVIGVT+Q++   +     +G CC+   V DARR
Sbjct: 2   NKKVVIGMSGGVDSSVAAYLLKQQGYDVIGVTMQVWQEDEEYEAVEGGCCSLSAVEDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV ++++ F+  VI  F   Y  G TP PCV CN+ +KF  LL    +LGA
Sbjct: 62  VAYKLDIPFYVMNFKDIFKKNVIDYFIDEYMQGRTPNPCVACNKFIKFDALLKKAMELGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      V +    R I+ +  D ++DQ+Y L+  TQ QL     P G  KKE
Sbjct: 122 DYVATGHYA-----VVEKHDNRYILRKSEDDKKDQTYALYNLTQFQLEHTLMPCGVYKKE 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +K+        G+ V   G +LGRH G
Sbjct: 177 RIREIAKEIGLLVHNKKDSEEICFIPDNDHGGYIKKQVPSKVKPGNFVDKEGNVLGRHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+A G P++V  ++   + V++G    +    +  ++IN++      D
Sbjct: 237 IVYYTIGQRKGLGIAFGVPMYVTDINPLRNEVVLGSENDIFKTELIAKDINFI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           ++    +   K+R S  P   ++   D+G V V+FE  +  +  GQ+ VFY +D     +
Sbjct: 293 SLQGTMEIQAKVRYSAKPSRAWITALDNGRVKVEFENKQRAITKGQSVVFYNND----LL 348

Query: 378 LGGGIIS 384
           LGGG+I 
Sbjct: 349 LGGGVID 355


>gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophaga thiooxidans DMS010]
 gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophaga thiooxydans DMS010]
          Length = 367

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 187/376 (49%), Gaps = 26/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +VVV +SGGVDSSV A LL +    V G+ ++ +           C   +D  DA  
Sbjct: 3   ENKKVVVGLSGGVDSSVAALLLNQQHEQVEGLFMKNWVDFADESE---CTVEEDRKDAMS 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V +T+ +  +  ++   + + V   F   Y AG TP P + CNR +KF   L    +LG 
Sbjct: 60  VAETVGIDFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKAFLDHAMELGG 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            ++ATGHY R     G     +  + + +D ++DQSYFL+   QQQL    FPLG++ K 
Sbjct: 120 VLIATGHYARVAERDG-----KFHLLKGLDDKKDQSYFLYTLGQQQLSRTLFPLGELPKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A + G    DK DS  ICF+ +  + + + R     A  G++   +G+ +G H G
Sbjct: 175 EVRQIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIP--AQPGEMRTPDGEKIGEHAG 232

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREINWL 311
           ++ YT+GQR+GLG+       GEP FV   D  +    V+ G    L    +   +++W+
Sbjct: 233 LMYYTLGQRQGLGIGGRKNSTGEPWFVAGKDMENRILYVVQGDHPWLWSQNLTAEQLSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                 +      +   K R  Q   P  + ++D+G ++V+F+  +  V  GQ+ VFY  
Sbjct: 293 AG----EEPEFPCRAAAKTRYRQPDQPCTISKDDNGLIHVEFDDKQRAVTPGQSVVFYQQ 348

Query: 371 DSNEARVLGGGIISGS 386
           D      LGGGII  +
Sbjct: 349 DD----CLGGGIIVST 360


>gi|221214491|ref|ZP_03587462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD1]
 gi|221165748|gb|EED98223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia multivorans CGD1]
          Length = 381

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRGLVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      +   +GF C  K R  Q        +   +   + F  ++  V  GQ+ V Y 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIIS 384
            +      LGGGII 
Sbjct: 348 GEI----CLGGGIIE 358


>gi|256846987|ref|ZP_05552433.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715651|gb|EEU30626.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 377

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 195/390 (50%), Gaps = 25/390 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +V   I + +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   +    QL
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY   +     D      + R  D  +DQ+YFL     +QL  + FPL +  
Sbjct: 120 GADYVATGHYADLKR----DADGNMHLMRAKDQHKDQTYFLSQLDHEQLDHVMFPLANYT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R +A+E GL +ADK DS  ICF+ + G + + + +     A  G +  ++G+++G 
Sbjct: 176 KPEIRQIAKEAGLAVADKKDSVGICFIGEDGHFREFLSQYLP--AQPGKMETIDGKVVGE 233

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           H G++ YTIGQRRGLG+       EP FV+  D   + +IVG       L    +   +I
Sbjct: 234 HAGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDIKRNVLIVGQGYSNPHLYATHLEASDI 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACV 366
           +W+ D +        F C  K R  Q    V V  +DD   V V F+     +  GQA V
Sbjct: 294 HWVDDVVSRYG--HHFHCTAKFRYRQVDEGVTVDISDDETKVTVTFDDPARAITPGQAVV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY         LG  II  +   +   + +
Sbjct: 352 FYDG----QECLGSAIIDRAFSHERQLQYI 377


>gi|85702766|ref|ZP_01033870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. 217]
 gi|85671694|gb|EAQ26551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. 217]
          Length = 383

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDTNKPLNSLGFPKPPAETRVVVAMSGGVDSSVVAAHLASEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ +L     G +   +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKL-----GSQGPELHCASDSARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K + R+LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKAATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG+H G+I+YTIGQRRGLG+  + EPL+VV LD ++ RVIVGP+E L
Sbjct: 236 AEPGEIVHADGRVLGQHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDARRVIVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + LREINWLGD          ++  VK+RS++ P    ++  +     V+    E 
Sbjct: 296 STRTVPLREINWLGDVPMTSQT--EWQVSVKVRSTRPPREAVLRPISATEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  +++ +RVLGGG I
Sbjct: 354 GVSPGQACVFY--ETDGSRVLGGGWI 377


>gi|254465357|ref|ZP_05078768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium Y4I]
 gi|206686265|gb|EDZ46747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium Y4I]
          Length = 381

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +   T +NSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDHNTTVNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GPNGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L
Sbjct: 236 AEPGEIVHSDGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F     D +   VK+RS++ P    ++   D    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY S+   +R+ GGG I
Sbjct: 354 GISPGQACVFYASE--GSRIFGGGWI 377


>gi|317056376|ref|YP_004104843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 7]
 gi|315448645|gb|ADU22209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 7]
          Length = 360

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 151/368 (41%), Positives = 212/368 (57%), Gaps = 13/368 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+ AMSGGVDSS    LL   GY+V G T+ LYN+     R+ SCC+  DV DAR V 
Sbjct: 4   KKVLAAMSGGVDSSTAVKLLLDAGYEVAGATMHLYNNEDIGIREKSCCSLNDVEDARLVA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  +VF++ + F+  V+  F  +Y AG TP PC++CN+ +KF   L   R LG D 
Sbjct: 64  LKLGIDFHVFNFSDEFKTCVMDNFVDTYLAGGTPNPCIECNKHLKFGRFLDRARMLGFDY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+ S     DD   R ++ R  D  +DQSY L+  TQ QL    FP+G+M K  +
Sbjct: 124 IATGHYVTSHY---DDASGRWLLKRSADSSKDQSYVLYGMTQDQLAHTIFPVGEMSKPEI 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E GL  A K DSQDICF+  G Y   +    AG   EGDIV  +G +LGRH G+I
Sbjct: 181 RAIAEENGLINAHKRDSQDICFIPDGDYASFITE-RAGEQPEGDIVLSDGTVLGRHKGLI 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRG+GV+  EPLFV   D  S+R+I+G  E +   R+   ++N++      + +
Sbjct: 240 HYTIGQRRGVGVSYSEPLFVTAKDMVSNRLIMGTAEQVCSKRLSAHDVNFITF----EKL 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +C  + R  Q  VP  V    ++ V V+F+     V+ GQ+ VFY  +     V+G
Sbjct: 296 TAPLRCTAQTRYHQKDVPCTVFPTGENTVEVEFDTPHKAVSKGQSVVFYDGE----YVIG 351

Query: 380 GGIISGSK 387
           GG ISG++
Sbjct: 352 GGTISGTE 359


>gi|190149429|ref|YP_001967954.1| tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|303249862|ref|ZP_07336066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307249368|ref|ZP_07531361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251687|ref|ZP_07533592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260616|ref|ZP_07542308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262747|ref|ZP_07544374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|189914560|gb|ACE60812.1| putative tRNA (5-methylaminomethyl-2-
           thiouridylate)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651429|gb|EFL81581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306858590|gb|EFM90653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860884|gb|EFM92892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869693|gb|EFN01478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871892|gb|EFN03609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 389

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 211/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|307256183|ref|ZP_07537970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865364|gb|EFM97260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 389

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 211/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNVQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|27262188|gb|AAN87375.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Heliobacillus mobilis]
          Length = 376

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 147/364 (40%), Positives = 203/364 (55%), Gaps = 14/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSSV AALL   GY+VIGVTLQ++        +G CC+   V DARRV  T
Sbjct: 5   VVVAMSGGVDSSVTAALLLEKGYNVIGVTLQIWPKDAPEGAEGGCCSLSAVEDARRVAFT 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV ++ + F   VI  F   Y AG+TP PC+ CNR +KF  LL  +  LGAD +A
Sbjct: 65  LGIPHYVMNFRDYFEEEVINYFGQEYLAGQTPNPCIRCNRVIKFEGLLQKSLALGADKVA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      D  ++R  + +  D ++DQSY LF  TQ+QL    FPLG   K  +R+
Sbjct: 125 TGHYARIEY---DAERQRYRLGQAKDAKKDQSYVLFNMTQEQLSRTMFPLGGFTKPEIRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261
           +AR   L +A K DSQ+ICF+    Y   + +R        G  V  +G ++G H G+  
Sbjct: 182 MARAYNLAVASKPDSQEICFIPDNDYRRFLQERYPENSFAPGPFVDTSGNVIGTHQGLPF 241

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQR+GLG A G P +VV LD   + VI+G  E +   R+   ++NW+      + + 
Sbjct: 242 YTVGQRKGLGQAFGYPAYVVGLDVARNAVIIGRDEDVFSRRLLAGDLNWI----EVNRLT 297

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              +   KIR S       ++   +G  V V+FE+ +  +  GQA VFY  D     ++G
Sbjct: 298 APMEVQAKIRYSALKAKAIIRPVGEGDQVIVEFEEKQRAITPGQAVVFYQGD----WIVG 353

Query: 380 GGII 383
           GG I
Sbjct: 354 GGTI 357


>gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella novicida FTG]
 gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella novicida FTG]
          Length = 359

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+R+   +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|169825283|ref|YP_001692894.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia
           magna ATCC 29328]
 gi|205816864|sp|B0S3R4|MNMA_FINM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167832088|dbj|BAG09004.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia
           magna ATCC 29328]
          Length = 366

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 206/380 (54%), Gaps = 24/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++        G C A +D  DA
Sbjct: 2   DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +L
Sbjct: 59  VAVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R  +  GDDG +   + R +D  +DQ+YFL   TQ+Q+ ++ FP+G+++
Sbjct: 119 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQEQIKNVMFPVGELQ 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+H
Sbjct: 174 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 231

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
           NG++ +TIGQRRGLG+   G   FV   +  ++ +IV   E    L  +++Y  +     
Sbjct: 232 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQF---- 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +        + F C  K R  Q  +   V+  DD  V V ++ +   V  GQA VFY  +
Sbjct: 288 ETSLNHLDRNEFDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDT-KAVTPGQAAVFYDGE 346

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 +G  II      D 
Sbjct: 347 V----CIGSAIIDEVYNGDK 362


>gi|269468097|gb|EEZ79807.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [uncultured SUP05 cluster bacterium]
          Length = 367

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 184/380 (48%), Gaps = 27/380 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             K+ +++V +SGGVDSSV A LL   GYDV  + ++ +    + +    C A QD+ DA
Sbjct: 6   PNKNNKIIVGLSGGVDSSVAALLLLEQGYDVEALFMKNWEEDDSEEH---CSAEQDLSDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V D +++  +  ++   + + V   F   +  G TP P V CN+ +KF   L     L
Sbjct: 63  QKVADKLSIKLHTINFSADYWDDVFDHFLKEHKKGRTPNPDVLCNQKIKFKVFLEHAILL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R       +      +   +D  +DQSYFL    QQQL +  FPLG++ 
Sbjct: 123 GADKIATGHYARIV-----EKDNVYSLKTGLDNAKDQSYFLHLLNQQQLSNSLFPLGEID 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A E     ADK DS  ICF+ +  +   ++         GD+V  +G+ +  H
Sbjct: 178 KSKVREIATEHNFITADKKDSTGICFIGERNFSQFLQTYLPK--QPGDVVDQDGKFIKHH 235

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYL--DKNSSRVIVGPRESLEVHRIYLREIN 309
           +G+  YT+GQR+GL +       GEP FV     D N   V+ G    L  + +     +
Sbjct: 236 DGLAFYTMGQRKGLEIGGGFGQSGEPWFVADKCIDSNELIVVQGDHPLLYHNTLNASSAH 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+      +       C  KIR  Q      + + ++  + + FE+ +  +  GQ+ VFY
Sbjct: 296 WIN-----NPPKLPLTCTAKIRYRQQSQSCTIVQEENKHLKIVFEQPQRAITPGQSIVFY 350

Query: 369 TSDSNEARVLGGGIISGSKR 388
            +D      LGG II   + 
Sbjct: 351 DNDV----CLGGAIIETREN 366


>gi|205829088|sp|A7ICB9|MNMA_XANP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 389

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/383 (55%), Positives = 261/383 (68%), Gaps = 5/383 (1%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T L  LD D +P   RVVVAMSGGVDSSVVA L  R GYDV+GVTLQLY+  +A+ R+G+
Sbjct: 2   TDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHRRGA 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+YDA  V  T+ + HYV DYE RF+  VI  FA+SYA+G TP+PCVDCNRTVKF
Sbjct: 62  CCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKF 121

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL+   +LGA  LATGHY+ SR         RR + R  +  RDQSYFL+ATT  QL 
Sbjct: 122 RDLLATAEELGARYLATGHYVASRALPD----GRRGLYRAAEEARDQSYFLYATTAAQLE 177

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG+M+K  VR LA E GL +ADK DSQDICFV  G Y  VV+R+    A  GDIV
Sbjct: 178 RLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPGDIV 237

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           HL+G++LGRH G+++YTIGQR+GLG+A  EPL+V+ +D    +V VGPR +L V  I + 
Sbjct: 238 HLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAITID 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQAC 365
           ++NWLGD  F DA+      +VK+RS++ PVP  + R  DG   V     E GVA GQAC
Sbjct: 298 DVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPGQAC 357

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           V Y      AR+LGGG I  ++R
Sbjct: 358 VLYDDAGAAARLLGGGTIMRAER 380


>gi|317495071|ref|ZP_07953443.1| tRNA methyl transferase [Gemella moribillum M424]
 gi|316914843|gb|EFV36317.1| tRNA methyl transferase [Gemella moribillum M424]
          Length = 370

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 192/381 (50%), Gaps = 21/381 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV MSGGVDSSV A LLK+ GYDVIGV ++ +  +     +G C A +D  D  +V
Sbjct: 4   GKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGGCVAEKDYEDVIKV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++ +Y  ++E+ + N V   F   Y  G TP P + CN+ +KF   L     LGAD
Sbjct: 61  CEQLDIPYYSINFEKEYWNKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +     D   +R++ R +D  +DQ+YFL    Q Q+ ++ FP+G+++K+ 
Sbjct: 121 YVATGHYARVK-----DEDNQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DS  ICF+ +  + + + +     A  G +V L+G I G H G+
Sbjct: 176 VRRIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AKSGKMVDLDGNIRGEHVGL 233

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           ++YTIGQR GLG+       GE  F    D   + + V      E         +     
Sbjct: 234 MHYTIGQRHGLGIGGTKDTDGEAWFACGKDLEKNILYVCQGFHNEKLYSDSLLAS-SLSF 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +D   + F C  K R  Q    V V+   DD V V ++     V  GQA VFY  D  
Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVDVEILEDDKVKVVYKNPVRAVTPGQAVVFYDGDV- 351

Query: 374 EARVLGGGIISGSKRSDAVEE 394
               LGG II    +     +
Sbjct: 352 ---CLGGAIIDEVYKDGEKLQ 369


>gi|54297299|ref|YP_123668.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str.
           Paris]
 gi|81601865|sp|Q5X5H6|MNMA_LEGPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53751084|emb|CAH12495.1| hypothetical protein lpp1344 [Legionella pneumophila str. Paris]
          Length = 361

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +     +     C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDF---CPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +           + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  G+I    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+        EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
                 +     CF K R  Q      +   D+ + YV F   +  +  GQ  VFY  + 
Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNLHYVIFSSPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGIISGSKR 388
              + LGG  I    R
Sbjct: 349 ---QCLGGATIEQIIR 361


>gi|166031729|ref|ZP_02234558.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC
           27755]
 gi|166028182|gb|EDR46939.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC
           27755]
          Length = 359

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 137/369 (37%), Positives = 199/369 (53%), Gaps = 16/369 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K   +G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDEFKQQEEGGCCGLSAVEDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   + + +YV +++  F+  VI  F   Y  G TP PC+ CNR VK+  LL+   ++
Sbjct: 62  RRVAARLGIPYYVMNFKNEFKKYVIDYFIDDYLHGRTPNPCIACNRYVKWESLLTRAMEI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +           R  +   +   +DQ+Y L+  TQ QL     P+G   
Sbjct: 122 GADYIATGHYAQVEQLPS----GRYSIKTSVTSMKDQTYALYNLTQDQLSKTLMPVGKYS 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGR 255
           K+ VR +A  +GL +A K DSQDICFV  G Y   ++    AG    G+ V  +G I+G+
Sbjct: 178 KDEVRKMAENIGLLVAHKPDSQDICFVPDGDYATYIEENTAAGSIRPGNFVTSDGTIVGQ 237

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GII+YT+GQR+GLG+++G P FV+ +   ++ V+VG  E      +    +N++    
Sbjct: 238 HKGIIHYTVGQRKGLGLSLGHPAFVLEIRPETNEVVVGTNEESMSRYVRANHVNFMSVAD 297

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +       + + KIR +       V+R  +D +   F++    +  GQA V Y  +   
Sbjct: 298 IDGK----KRAWGKIRYNHKGAWCTVERTGEDEILCTFDEPVRAITPGQALVLYDGE--- 350

Query: 375 ARVLGGGII 383
             VLGGG I
Sbjct: 351 -YVLGGGTI 358


>gi|209964264|ref|YP_002297179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum centenum SW]
 gi|259495835|sp|B6ISD0|MNMA_RHOCS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209957730|gb|ACI98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum centenum SW]
          Length = 392

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 205/404 (50%), Positives = 256/404 (63%), Gaps = 23/404 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSL  DK P+D RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+      RKG+CC
Sbjct: 1   MNSLGFDKAPQDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGLTVGRKGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+YDAR+V D I++ HYV DYE RF  +VI  FA SY  GETP+PCV CN+ VKF D
Sbjct: 61  AGQDIYDARQVADRIDIPHYVLDYESRFGQSVIDDFADSYLRGETPIPCVRCNQRVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R LGAD LATGHY R        G     + R  D  RDQSYFLFATT  QL  L
Sbjct: 121 LLAQARDLGADCLATGHYARRVA-----GPTGPALHRGADPARDQSYFLFATTPAQLDYL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFP+G + K   R LA  +GL +ADK DSQDICFV  G Y  VV+++  G    G+IVHL
Sbjct: 176 RFPIGHLPKSETRALAERLGLAVADKPDSQDICFVPAGNYAQVVEKLRPGAVEPGEIVHL 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMG--------EPLFVVYLDKNSSRVIVGPRESLEV 300
           +G++LGRH+G+I YT+GQRRGLG+           +PL+VV ++  + RV+VGPR +L  
Sbjct: 236 DGRVLGRHDGVIRYTVGQRRGLGIGGRRTPEGEELDPLYVVRVEPETRRVVVGPRTALAR 295

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGV 359
            R+ +RE+NWLG     D         VK+RS+Q  +P  V    D G  V   + + GV
Sbjct: 296 DRVLVREVNWLGGTDTADVP-----VTVKLRSAQPALPARVSLTADGGAVVTLTQPQYGV 350

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           A GQA VFY  D    RVLGGG I  ++ S A+ ++ +      
Sbjct: 351 APGQAAVFYQGD----RVLGGGWIVRAEASPALADAPIPAGAGT 390


>gi|167629936|ref|YP_001680435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Heliobacterium modesticaldum Ice1]
 gi|205816855|sp|B0TFA7|MNMA_HELMI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167592676|gb|ABZ84424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Heliobacterium modesticaldum Ice1]
          Length = 385

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 149/364 (40%), Positives = 200/364 (54%), Gaps = 14/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSSV AALL   GYDVIGVTLQ++        +G CC+   V DA+RV   
Sbjct: 5   VVVAMSGGVDSSVTAALLLEQGYDVIGVTLQIWPKDAPEGAEGGCCSLSAVEDAKRVASK 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V HYV ++ + F   VI  F   Y AG+TP PC+ CNR +KF  LL  +  LGA  +A
Sbjct: 65  LGVPHYVLNFRDYFETEVIEYFGREYLAGQTPNPCIRCNRVIKFEGLLQKSLALGAAKVA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      D    R  + R +D  +DQSY LF  TQ+QL    FPLG   K  +R+
Sbjct: 125 TGHYARIE---QDSATGRYRLGRGIDANKDQSYALFNMTQEQLSRTLFPLGGFTKPEIRE 181

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261
            A ++GL +A K DSQ+ICF+    Y   + +R        G  V   G ++G H G+  
Sbjct: 182 KAAQLGLAVASKPDSQEICFIPDNDYRRFLEERYPDHRFQPGPFVDQEGNVIGTHRGLPF 241

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQR+GLGVA G P +V+ LD   + V++GP E+++  R+   ++NW+        + 
Sbjct: 242 YTVGQRKGLGVAFGFPAYVIALDVEHNAVVIGPDEAVKGRRLLADDLNWIDIA----GLK 297

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              +   KIR S  P    +    DG  V V+F   +  +  GQA VFY  D     V+G
Sbjct: 298 APMEVEAKIRYSASPAIAVISPVKDGSAVIVEFAAPQRAITPGQAVVFYRGD----WVVG 353

Query: 380 GGII 383
           GG I
Sbjct: 354 GGTI 357


>gi|253998326|ref|YP_003050389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|313200400|ref|YP_004039058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. MP688]
 gi|253985005|gb|ACT49862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|312439716|gb|ADQ83822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. MP688]
          Length = 361

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 181/377 (48%), Gaps = 27/377 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV +SGGVDSSV A LLK  GYDV+G+ ++ +      +    C A QD+ DA  
Sbjct: 2   SKKRVVVGLSGGVDSSVTALLLKEQGYDVVGLFMKNWEDDDTDE---YCPAKQDLIDAAA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++ + ++  V   F   Y AG TP P + CN  +KF   L     LGA
Sbjct: 59  VADKIGIELEAVNFSKEYKERVFQNFLEEYQAGRTPNPDIFCNSEIKFKAFLDHAMGLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY + R     +      + +  D  +DQSYFL+   Q QL    FPLG + K 
Sbjct: 119 DLIATGHYAQVR-----EKNGLFQLLKAEDGSKDQSYFLYRLNQLQLSKTLFPLGGLLKR 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A   GL  A K DS  ICF+ +  + + + R        G++    G+++G H G
Sbjct: 174 EVREIAHREGLVTAGKKDSTGICFIGERPFREFLNRYLPRE--PGEMQTPEGKVVGEHEG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSS--RVIVGPRESLEVH-RIYLREINW 310
           ++ YT+GQR+GL +       GEP FV   D   +   V+ G    L  +  +   +++W
Sbjct: 232 LMYYTLGQRQGLKIGGSRESNGEPWFVAGKDMQRNVLIVVQGHDHPLLCNDGLVASQLHW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
           +     E   V       K R  Q   P  + R ++    + F + +  +  GQ+ V Y 
Sbjct: 292 IAGEAPETHWV----YAAKTRYRQPDAPCEIDRLEESETEIRFGQPQWAITPGQSAVVY- 346

Query: 370 SDSNEARVLGGGIISGS 386
                   LGGGII+ +
Sbjct: 347 ---ESQVCLGGGIITRA 360


>gi|293609749|ref|ZP_06692051.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828201|gb|EFF86564.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 377

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236

Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT          GL  A     FV++ D  ++R++VG       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     ++  V+G +C  K R  Q      +  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPVEGLRCTAKTRYRQPDQTCTIFIDENTEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312320|ref|ZP_06803107.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122501358|sp|Q2A5X5|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234852|sp|A7N9A5|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205821924|sp|Q0BP64|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 359

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|163741163|ref|ZP_02148555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385516|gb|EDQ09893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis 2.10]
          Length = 381

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M      +LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ +     DG     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H+G+I+YTIGQRRGLG+  + EPL+VV LD ++ +V+VGP+E L
Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F     D +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  +   +R+ GGG I
Sbjct: 354 GISPGQACVFYAGE--GSRIFGGGWI 377


>gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457896|ref|ZP_03666369.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371318|ref|ZP_04987320.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|71658014|sp|Q5NEF9|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816649|sp|B2SEJ7|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822328|sp|Q14FW2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 359

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|325122971|gb|ADY82494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 377

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236

Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT          GL  A     FV++ D  ++R++VG       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     ++  V+G +C  K R  Q      +  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPVEGLRCTAKTRYRQPDQACTIFIDENTEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|148358920|ref|YP_001250127.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila str. Corby]
 gi|296106968|ref|YP_003618668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|205816878|sp|A5IBN1|MNMA_LEGPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148280693|gb|ABQ54781.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila str. Corby]
 gi|295648869|gb|ADG24716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 361

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +     +     C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND---YCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +           + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  G+I    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+        EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
                 +     CF K R  Q      +   D+ + YV F   +  +  GQ  VFY  + 
Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNLHYVMFSSPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGIISGSKR 388
              + LGG  I    R
Sbjct: 349 ---QCLGGATIEQIIR 361


>gi|297588098|ref|ZP_06946742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ATCC 53516]
 gi|297574787|gb|EFH93507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ATCC 53516]
          Length = 375

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 24/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++        G C A +D  DA
Sbjct: 11  DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +L
Sbjct: 68  VTVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 127

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R  +  GDDG +   + R +D  +DQ+YFL   TQ Q+ ++ FP+G+++
Sbjct: 128 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQ 182

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+H
Sbjct: 183 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 240

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
           NG++ +TIGQRRGLG+   G   FV   +   + +IV   E    L  +++Y  +     
Sbjct: 241 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKLYASQF---- 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +        + F C  K R  Q  +   V+  DD  V V ++ +   V  GQA VFY  +
Sbjct: 297 ETSLNHLDRNEFDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDT-KAVTPGQAAVFYDGE 355

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 +G  II      D 
Sbjct: 356 V----CIGSAIIDEVYNGDK 371


>gi|89069527|ref|ZP_01156871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola granulosus HTCC2516]
 gi|89044862|gb|EAR50952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola granulosus HTCC2516]
          Length = 379

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/386 (51%), Positives = 251/386 (65%), Gaps = 14/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + +   LNSL   K P   RVVVAMSGGVDSSVVAA L R+GYDV+GVTLQLY+   A
Sbjct: 1   MPLDQ--PLNSLGFAKPPAQTRVVVAMSGGVDSSVVAAELAREGYDVVGVTLQLYDHGAA 58

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG+CCAG+D++DARRV + +   HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 59  LARKGACCAGRDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 118

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 119 NERVKFKDLLETARDLDADCMATGHYIQRKM-----GAHGPELHSAADAARDQSYFLFST 173

Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA   GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 174 TPEQLAYLRFPLGHLASKAETRALAGRHGLPVADKPDSQDICFVPNGNYASVIEKLRPGA 233

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  GDIV   G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD ++ RV+VGP+E L
Sbjct: 234 AEPGDIVDTEGRVLGTHRGLIHYTIGQRRGLGIGGLADPLYVVKLDVDTRRVVVGPKELL 293

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGDG F +      +  VK+RS++ P    ++  +     V+    E 
Sbjct: 294 ATRTVPVREINWLGDGGFLEG--GPREISVKVRSTRPPTEALLRPISATEAEVELLTPEE 351

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++   RVLGGG I
Sbjct: 352 GVSPGQACVFY--ETGGTRVLGGGWI 375


>gi|254253215|ref|ZP_04946533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia dolosa AUO158]
 gi|124895824|gb|EAY69704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia dolosa AUO158]
          Length = 382

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L   ++    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           +      +   +G  C  K R  Q            +   + F+ ++  V  GQ+ V Y 
Sbjct: 292 VAG----EPPAEGHACGAKTRYRQADAACTFAGAGGERFSLAFDDAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGIIS 384
            D      LGGGII 
Sbjct: 348 GDV----CLGGGIIE 358


>gi|223041989|ref|ZP_03612173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor 202]
 gi|223017246|gb|EEF15674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor 202]
          Length = 389

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/391 (33%), Positives = 211/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S    L      +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  SHFPPLTEEQRAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F S Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+A ++
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDENAQ--LLRGLDTNKDQSYFLYALSK 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGEIEKPIVRKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        EP +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFE 353
              L    +   ++NW+        + +  +C VK R  Q+ +P  +Q  DD  + V F+
Sbjct: 303 NSALLSTGLIASQLNWVDL----QPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGGII 
Sbjct: 359 EPQIAVTPGQSAVFYLGEV----CLGGGIIE 385


>gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 369

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 184/382 (48%), Gaps = 30/382 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VV+ +SGGVDSSV AALLK  GY+VIG+ ++ +     ++    C   QD  DA  
Sbjct: 2   SKKKVVIGLSGGVDSSVSAALLKEQGYEVIGLFMKNWEDDDDAE---YCSTRQDWIDAVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +     ++   +++ V   F   Y AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADVLGIDIEAVNFSAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY R R    D G  R  + + +D  +DQSYFL    Q QL    FPLG+++K 
Sbjct: 119 DLIATGHYARVRESASDAG--RFELLKAIDHTKDQSYFLHRLNQAQLSKTLFPLGEIRKT 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ +  + + + R  +     G +    G  +G H G
Sbjct: 177 EVRKMAEQLGLPNAAKKDSTGICFIGERPFREFLNRYLSY--QPGPMKTPEGDTIGEHVG 234

Query: 259 IINYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +  YT+GQR+G+G+             +  +V   D  S+ + V        L    +  
Sbjct: 235 LSFYTLGQRKGIGIGGIKAHQNANGSSDAWYVARKDIASNTLYVVQGHDHPWLLSASLEA 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
            +++W+     +D      +   K R  Q  VP  V   D   + + F+ S+  V  GQ+
Sbjct: 295 DQLSWIAGAPPDDG-----QLSAKTRYRQADVPCHVGMVDAQRLQLAFDASQWAVTPGQS 349

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
            V Y  D      LGGGII+ S
Sbjct: 350 AVLYRGDV----CLGGGIIASS 367


>gi|207721599|ref|YP_002252038.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum MolK2]
 gi|206586760|emb|CAQ17345.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum MolK2]
          Length = 370

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 181/374 (48%), Gaps = 27/374 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I    G+ +G+H G
Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G     K R  Q   P  V    D  + + F +++  V  GQ+ V Y 
Sbjct: 292 VAGH----PPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFSEAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGII 383
            D      LGGGII
Sbjct: 348 GDV----CLGGGII 357


>gi|118496723|ref|YP_897773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida U112]
 gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida FTE]
 gi|166234853|sp|A0Q454|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella novicida U112]
 gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida FTE]
          Length = 359

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+R+   +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|92114562|ref|YP_574490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
 gi|122419524|sp|Q1QUR7|MNMA_CHRSD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91797652|gb|ABE59791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
          Length = 384

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 184/376 (48%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A  L   GY V G+ ++ ++    ++    C A +D+ DA+ VCD
Sbjct: 17  KVIVGMSGGVDSSVTALTLLEQGYAVEGLFMKNWDEDDGTE---YCTAKEDLADAQAVCD 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ ++ +  ++   + + V   F + Y AG TP P + CNR +KF   L     LGA+ +
Sbjct: 74  TLGITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGAEKI 133

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R     G        + + +D  +DQSYFL A  +  +    FP+G+M+K  VR
Sbjct: 134 ATGHYVRQGWRDG-----HCRLLKGLDANKDQSYFLHAVPEVAIARTLFPVGEMEKSEVR 188

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A   GL  A K DS  ICF+ + ++ D +K+     A  G I    G+++G H G++ 
Sbjct: 189 AIAERHGLTTARKKDSTGICFIGERRFSDFLKQYLP--AQPGVIETPEGEVIGEHMGLMY 246

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+         P +V   D   + +  + G     L    +    + W+  
Sbjct: 247 YTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVAG 306

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDS 372
                      +   K R  Q  V   V+  +D GV   F++ +  V  GQ+ V Y  D 
Sbjct: 307 ----QPPAPEARLQAKTRYRQQDVACHVRVLEDGGVEARFDEPQRAVTPGQSLVLYDGDI 362

Query: 373 NEARVLGGGIISGSKR 388
                LGGG+I  +  
Sbjct: 363 ----CLGGGVIRSTWN 374


>gi|307244970|ref|ZP_07527067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253923|ref|ZP_07535775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258377|ref|ZP_07540118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306854135|gb|EFM86343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306863127|gb|EFM95069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867561|gb|EFM99408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 389

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 212/391 (54%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D +++  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLDMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|170699615|ref|ZP_02890654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria IOP40-10]
 gi|170135497|gb|EDT03786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia ambifaria IOP40-10]
          Length = 384

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/391 (32%), Positives = 184/391 (47%), Gaps = 27/391 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A+
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 MIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L   ++    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                 +   DGF C  K R  Q        R D +   + F  ++  V  GQ+ V Y  
Sbjct: 293 AG----EPPADGFSCGAKTRYRQADAACSFGRGDGERFSLAFNDAQWAVTPGQSAVLYDG 348

Query: 371 DSNEARVLGGGIISGSKRSDAVEESLLSVIG 401
           +      LGGGII  +      + +  +  G
Sbjct: 349 EI----CLGGGIIEFAATGQPGQTAPAAAAG 375


>gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166234854|sp|A4J081|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 359

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|297537830|ref|YP_003673599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera sp. 301]
 gi|297257177|gb|ADI29022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera sp. 301]
          Length = 369

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 193/384 (50%), Gaps = 25/384 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++L+K+ K   VVV +SGGVDSSV A LLK+ GY+V G+ ++ +      +    C + Q
Sbjct: 1   MNLNKSSK-KHVVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDE---YCSSKQ 56

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DA  V D I +     ++ + +++ V   F S Y AG TP P + CN  +KF   L 
Sbjct: 57  DLIDAVSVADKIGIDIEAVNFSKEYKDRVFDNFLSEYKAGRTPNPDILCNAEIKFKAFLD 116

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGADV+ATGHY + R      G     + +  D  +DQSYFL    Q QL    FP
Sbjct: 117 HAMGLGADVIATGHYAQVRENPLKPG--LFQLMKADDGSKDQSYFLHRLNQAQLSKTLFP 174

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG M K  VR++AR  GL  A+K DS  ICF+ +  + + + +        G+I    G+
Sbjct: 175 LGQMLKREVREIARGAGLINAEKKDSTGICFIGERPFQEFLSKYLPRE--PGEIKTPEGK 232

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303
            +G+H G++ YT+GQR+GL +       GEP FV   D  ++ +IV        L    +
Sbjct: 233 TVGKHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAAKDMVANELIVVQGHQHPLLLNDGL 292

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362
              ++ W+ D    +  +  +    K R  Q   P  + +   D V + F + +  +  G
Sbjct: 293 KASQLTWIDD----EEPITNWVYDAKTRYRQPDAPCEIDRLTKDEVEIKFGQKQWAITPG 348

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q+ V Y S+      LGGGII+ +
Sbjct: 349 QSAVVYESNV----CLGGGIITTA 368


>gi|260426477|ref|ZP_05780456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citreicella sp. SE45]
 gi|260420969|gb|EEX14220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citreicella sp. SE45]
          Length = 380

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 195/382 (51%), Positives = 255/382 (66%), Gaps = 12/382 (3%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +A +LNSL L K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A  +K
Sbjct: 4   DAPKLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY  G TP+PC+ CN  V
Sbjct: 64  GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DLL   + L AD +ATGHYI+  +     G R   +    D  RDQSYFLF+TT +Q
Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQRMV-----GDRGPELHSAADANRDQSYFLFSTTPEQ 178

Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           L  LRFPLG +K K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G
Sbjct: 179 LSFLRFPLGHLKSKAETRALAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +IVH++G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD +  +VIVGP+E L    
Sbjct: 239 EIVHVDGRVLGEHRGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKQVIVGPKELLATRT 298

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           + +REINWLGD  F       +   VK+RS++ P    ++  ++    V+   +E GV+ 
Sbjct: 299 VPVREINWLGDEPFTSR--KEWHVSVKVRSTRPPREAVIRPISETEAEVELVVAEEGVSP 356

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQACVFY  D+  +R+ GGG I
Sbjct: 357 GQACVFY--DTESSRIFGGGWI 376


>gi|83859630|ref|ZP_00953150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851989|gb|EAP89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 433

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/375 (54%), Positives = 268/375 (71%), Gaps = 8/375 (2%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+L   P D RVV AMSGGVDSSVVAA+L R GY V+G+TLQLY+  +A  RKG+CCAGQ
Sbjct: 66  LNLGGEPSDHRVVAAMSGGVDSSVVAAVLHRAGYQVVGMTLQLYDHGEAVHRKGACCAGQ 125

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D++DARRV + +  +HYV DYE RFR AVI  FA +Y AG TP+PCV CN++VKF+DLL+
Sbjct: 126 DIHDARRVAEAMGFAHYVLDYETRFREAVIEDFADTYLAGFTPIPCVRCNQSVKFADLLA 185

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++QLGAD L TGHYI+  +        R  + R  D  +DQSYFLFATT++QL  LRFP
Sbjct: 186 TSKQLGADCLVTGHYIQRTMS-----GNRPELRRAADAGKDQSYFLFATTEEQLDYLRFP 240

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + KE  R+LA  +GL +A K DSQDICFV  G Y  VV+++  G +  G+IVHL+G+
Sbjct: 241 LGHLNKEQTRELAAALGLIVAAKPDSQDICFVPDGDYAAVVEKVRPGASRPGEIVHLDGR 300

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H G++ YT+GQRRGLG+A GEPL+VV LD  +++VIVGPRE+L+V RI L ++NW+
Sbjct: 301 VMGEHEGVLRYTVGQRRGLGIATGEPLYVVRLDAENAQVIVGPREALQVRRITLTDVNWI 360

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           GDG   +A  DG    +K+RS++ P P  ++   DGV+V  E  E GVA GQACVFY+  
Sbjct: 361 GDGDLSEA--DGLTVGIKVRSTRPPKPAILEVTGDGVFVLLETGEEGVAPGQACVFYSH- 417

Query: 372 SNEARVLGGGIISGS 386
            +  RVLGGG I  +
Sbjct: 418 PDHDRVLGGGWIRAT 432


>gi|295675544|ref|YP_003604068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1002]
 gi|295435387|gb|ADG14557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1002]
          Length = 420

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 181/395 (45%), Gaps = 29/395 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VVV MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SKRKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     DG  R  + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 ETIATGHYARVRQNHERDG--RFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+I+G H G
Sbjct: 177 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKIVGEHIG 234

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP F    D  ++ + V        L  H +     +W
Sbjct: 235 LAFYTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQA 364
           +      +   DGF C  K R  Q            G        + F+ ++  V  GQ+
Sbjct: 295 VAG----EPPADGFACGAKTRYRQADAACTFNAAAAGGSGDGLFELTFDAAQWAVTPGQS 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
            V Y  D      LGGGII  +      E      
Sbjct: 351 AVLYDGDV----CLGGGIIERAMTGQPAELPPDQA 381


>gi|282890136|ref|ZP_06298667.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499987|gb|EFB42275.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 375

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 202/391 (51%), Gaps = 23/391 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               VVV MSGGVDSSV A LLK  GY+VIG+ ++ ++    +   G C A +D  D  R
Sbjct: 3   SQKTVVVGMSGGVDSSVSALLLKEQGYNVIGMFMKNWDE---TDENGVCPATRDFEDVVR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD I++ +Y  ++ + + + V   F      G TP P + CNR +KF  +L    QLGA
Sbjct: 60  VCDQISIPYYSVNFVKEYWDNVFSHFIEELKQGHTPNPDILCNREIKFKVMLDKALQLGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R+ L      +    + + +D  +DQSYFL+A +Q+ L    FP+G+++K 
Sbjct: 120 DFLATGHYCRNYL-----AESHTQLLKGLDPGKDQSYFLYAISQRALHRALFPIGNLQKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++AR+ GL  ++K DS  ICF+ +  +   + +  +    +G+  ++ G ++G+H+G
Sbjct: 175 EVREIARKHGLSTSEKKDSTGICFIGKRDFKQFLGQYLSF--QKGNFENVKGDVVGQHDG 232

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDG 314
           +  YTIGQR+GLG+   G+  FVV  D   + V++       +L    +   +++W    
Sbjct: 233 VAYYTIGQRKGLGIGGQGDAWFVVGKDVERNVVVIDQGTHHPALYASTLTATDLHWHSPE 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           L        F C  KIR  Q      +++ ++  V V F   +  +   Q+ VFY     
Sbjct: 293 L----PKTPFTCRAKIRYRQTDQDCVIEKMSEGRVEVRFPIPQRAITPRQSIVFYD---- 344

Query: 374 EARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
           E   LGG II  +  +       + +  + F
Sbjct: 345 EHVCLGGAIIERAGPTLHELGLSVPIQSESF 375


>gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
 gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
          Length = 369

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 182/380 (47%), Gaps = 33/380 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C A QD  DA  V 
Sbjct: 4   KKVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEF---CSARQDWLDAVTVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +   V ++   ++  V   F   Y AG TP P V CN  +KF   L     LGA+ 
Sbjct: 61  DVIGIDIEVVNFAAEYKERVFSEFLKEYEAGRTPNPDVLCNAEIKFKAFLDHAISLGAER 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     +      + + +D  +DQSYFL    QQQL    FPLG+++K  V
Sbjct: 121 IATGHYARVR-----ENNGFFELLKAVDDTKDQSYFLHRLNQQQLSKTIFPLGEIRKTEV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ +  +   + R  +     G I    G  +G+H G+ 
Sbjct: 176 RQIAEKIGLPNAKKKDSTGICFIGERPFRAFLNRYLSYE--PGPIKTPEGDEIGQHVGLS 233

Query: 261 NYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            YTIGQR+G+G+             +  +V   D +++ + V        L    +   +
Sbjct: 234 FYTIGQRKGIGIGGLKSFRRPDGTSDAWYVARKDTHNNTLYVVQGHDHPWLLSPSLEAGQ 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
            +W+     ED      +  VK R  Q  VP  +    +  +   FEK +  +  GQ+ V
Sbjct: 294 SSWIAGISPEDG-----ELSVKTRYRQKDVPCVLNVTGNSELTASFEKPQWAITPGQSAV 348

Query: 367 FYTSDSNEARVLGGGIISGS 386
           FY  +      LGGGII  S
Sbjct: 349 FYKGNV----CLGGGIIDNS 364


>gi|310828741|ref|YP_003961098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
 gi|308740475|gb|ADO38135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
          Length = 359

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 194/376 (51%), Gaps = 26/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV MSGGVDSSV A LLK+ GYDVIGV ++ +  +      G C A +D  D +RVC
Sbjct: 1   MKIVVGMSGGVDSSVAALLLKQQGYDVIGVFMKNWEEKDED---GVCTATEDYEDVQRVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
           +TI++ +Y  ++   + + V   F   Y  G TP P V CN+ +KF   L     + G D
Sbjct: 58  ETIDIPYYTVNFTREYYDHVFAYFLDEYKKGRTPNPDVLCNKEIKFKRFLDYALGVVGGD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           VLATGHY +  ++ G     +  + R  D  +DQ+YFL    Q QL ++ FP+G + K+ 
Sbjct: 118 VLATGHYAQKDVHEG-----KFRLIRAFDHNKDQTYFLCQLGQHQLENVMFPIGHLDKKE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A +  L  ADK DS  ICF+ +  +   + +     A  G+I  L+G I G+H G+
Sbjct: 173 VREIAEKNNLITADKKDSTGICFIGERNFTKFLSQYLP--AQPGEIRDLDGNIKGKHEGL 230

Query: 260 INYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           + YT+GQRR     G   GEP FVV  D   + + V       +L    +   + +W+  
Sbjct: 231 MYYTLGQRRGLGIGGQGTGEPWFVVEKDLKDNVLYVVQGEKHPALYSRSLEATDTSWVAG 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +A    F C  K R  Q    V V  R+D G++VDF+K +  V  GQ  V Y    
Sbjct: 291 ----EAPAREFSCTAKFRYRQPDQGVHVTVRDDGGLHVDFDKDQKAVTPGQEVVLYDGQV 346

Query: 373 NEARVLGGGIISGSKR 388
                LGG  I   ++
Sbjct: 347 ----CLGGATIDSIEK 358


>gi|299769236|ref|YP_003731262.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1]
 gi|298699324|gb|ADI89889.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1]
          Length = 377

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236

Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT          GL  A     FV++ D  ++R+++G       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367
           +     ++  V+G +C  K R  Q      V  +++   GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPVEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549]
          Length = 359

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 203/374 (54%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R+R+   +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 NYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|291526521|emb|CBK92108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale DSM 17629]
          Length = 362

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 202/369 (54%), Gaps = 15/369 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K+  +G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YV +++  F+  VI  F S Y    TP PC+ CNR VK+  LL  + ++G
Sbjct: 62  RVAAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +   +  E+DQ+Y L+  TQ+QL     P+G+ +K
Sbjct: 122 ADYIATGHYARIAQLP----NGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R +A E GL +A KSDSQDICFV    Y   ++         G+ V  +G ILGRH 
Sbjct: 178 PQIRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+I+YTIGQR+GLG+    PLFV  L   ++ V++   ESL     Y+ +IN++     +
Sbjct: 238 GLIHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----Q 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +  G +   K+R S       +   ++G +   F++ +  +  GQA VFY        
Sbjct: 294 EHITPGTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFYQD----GH 349

Query: 377 VLGGGIISG 385
           VL GG I  
Sbjct: 350 VLCGGTIEK 358


>gi|53728867|ref|ZP_00134691.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 389

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 210/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|240948512|ref|ZP_04752885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor NM305]
 gi|240297020|gb|EER47591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus minor NM305]
          Length = 389

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/391 (33%), Positives = 211/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S    L      +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  SHFPPLTEEQRAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F S Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+A ++
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDENAQ--LLRGLDTNKDQSYFLYALSK 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGEIEKPIVRKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        EP +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFE 353
              L    +   ++NW+        + +  +C VK R  Q+ +P  +Q  DD  + V F+
Sbjct: 303 NSALLSTGLIASQLNWVDL----QPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGGII 
Sbjct: 359 EPQIAVTPGQSAVFYLDEV----CLGGGIIE 385


>gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 359

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 198/374 (52%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY + RL           + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYAQIRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   +++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIKLSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|239626056|ref|ZP_04669087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239520286|gb|EEQ60152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 358

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 14/366 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78
            +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        + +G CC    V DARR
Sbjct: 3   KKVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQDEDTDVQEAEGGCCGLSAVDDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + +YV +++E FR  V+  F   Y AG TP PC+ CNR VK+  LL  +  +GA
Sbjct: 63  VAMDLGIPYYVMNFKEEFRTNVMDYFVGEYVAGRTPNPCIACNRYVKWESLLRRSMAIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +           R  +   +  ++DQ+Y L+  TQ+QL     P+G   K+
Sbjct: 123 DYIATGHYAQICQLPS----GRYALKTSVTAQKDQTYALYNLTQEQLARTLMPVGSYHKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A ++GL +A K DSQ+ICF+    +   ++        EG+ V L G +LG+H G
Sbjct: 179 EIRRMAEDIGLQVAHKPDSQEICFIPDHDHARFIEAYTGMQVPEGNFVDLEGNVLGKHKG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GL ++MG P+FVV +   ++ V++G  + +  + +   ++NW+       
Sbjct: 239 ISHYTIGQRKGLNLSMGHPVFVVEIRPETNEVVIGEGKDVFTNVLCCDKLNWMAIDGLHG 298

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +   KIR S    P  ++    G V   F +       GQA VFY  D     V
Sbjct: 299 ---ESMEVTAKIRYSHKGSPCTIREIGRGLVECRFHEPVRAATPGQAVVFYDGD----YV 351

Query: 378 LGGGII 383
            GGG I
Sbjct: 352 AGGGTI 357


>gi|303251982|ref|ZP_07338153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307247144|ref|ZP_07529196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649412|gb|EFL79597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306856393|gb|EFM88544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 389

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 210/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNVQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|149203838|ref|ZP_01880807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. TM1035]
 gi|149142955|gb|EDM30997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. TM1035]
          Length = 383

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 197/386 (51%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K+P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDINKPLNSLGFPKSPAETRVVVAMSGGVDSSVVAAHLAAEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ ++     G +   +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GVQGPELHSATDSARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R+LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLEFLRFPLGHLPSKQATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G+ILG H G+I+YTIGQRRGLG+  + EPL+VV LD ++ RVIVGP++ L
Sbjct: 236 AEPGEIVHADGRILGTHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDTRRVIVGPKDML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + LREINWLGD          +   VK+RS++ P    ++  +     V+    E 
Sbjct: 296 STRTVPLREINWLGDAPLTSQA--EWHISVKVRSTRPPREAVLRPISATEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++   RVLGGG I
Sbjct: 354 GVSPGQACVFY--ETTGTRVLGGGWI 377


>gi|312143962|ref|YP_003995408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904613|gb|ADQ15054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium sp. 'sapolanicus']
          Length = 357

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 15/368 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
            +V++AMSGGVDSSV AALLK  GY+VIG T+ ++ +  +A+ R+  CC+   + DA+RV
Sbjct: 2   KKVMIAMSGGVDSSVAAALLKEKGYEVIGGTMHIFPDYEEATDREDHCCSYSAIRDAKRV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H+VF+ ++ F+  VI  F   Y+   TP PCV CN+ +KF  LL   R++G D
Sbjct: 62  AQKLEIPHFVFNLKDEFQEKVIDYFVYEYSKARTPNPCVMCNKKIKFDALLRKAREIGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      +    R ++ +  D  +DQSY L+   Q+QL    FPLGD  K+ 
Sbjct: 122 YIATGHYSKI-----EKNNGRYLLKKGRDESKDQSYMLYVLNQEQLSRALFPLGDFTKQE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R  A+E+G +I +K++SQ+ICFV    Y   +      I+  G I+   G  +G HNGI
Sbjct: 177 IRQKAKELGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISKPGPILDSEGNKVGTHNGI 236

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQRRGLGVA+G P +VV LD +++ VI+G  E +    ++  +IN +     +  
Sbjct: 237 SNYTIGQRRGLGVALGYPAYVVKLDPDNNAVILGEDEEVFSKGLFAEDINIIPFSSLDGK 296

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   +IR +  PVP  +++  +D + V+F+ S+  V  GQ+ VFY  D     V 
Sbjct: 297 I----EVAAQIRYNSYPVPAIIEKIGEDKIKVEFKDSQRAVTPGQSVVFYLDD----LVF 348

Query: 379 GGGIISGS 386
           GGGII  S
Sbjct: 349 GGGIIKES 356


>gi|110679829|ref|YP_682836.1| tRNA-specific 2-thiouridylase MnmA [Roseobacter denitrificans OCh
           114]
 gi|123065538|sp|Q166E3|MNMA_ROSDO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109455945|gb|ABG32150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter denitrificans OCh 114]
          Length = 380

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 189/386 (48%), Positives = 251/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  +  LNSL   K P + RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDPSPTLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ +      G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKS-----GPYGAELHSAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  KE  R LA + GL +A+K DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPDGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  GDIV  +G++L RH+G++NYTIGQRRGLG+  +  PL+V+ LD  + +V+VGP+  L
Sbjct: 236 AAPGDIVDTDGRVLARHDGVVNYTIGQRRGLGIGGLATPLYVIKLDAEARQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD  F+    D +   VK+RS++ P    ++  +D    V+    E 
Sbjct: 296 STRTVPVREINWLGDEPFQSR--DAWHLAVKVRSTRPPTDAIIRPISDTEATVELTSPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY +DS  +R+ GGG I
Sbjct: 354 GISPGQACVFYDTDS--SRIYGGGWI 377


>gi|163736308|ref|ZP_02143727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis BS107]
 gi|161390178|gb|EDQ14528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis BS107]
          Length = 381

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M      +LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   R L AD +ATGHYI+ +     DG     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IVH +G++LG H+G+I+YTIGQRRGLG+  + EPL+VV LD ++ +V+VGP+E L
Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F     D +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  +   +R+ GGG I
Sbjct: 354 GISPGQACVFYAEE--GSRIFGGGWI 377


>gi|54294275|ref|YP_126690.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
 gi|81601380|sp|Q5WWV9|MNMA_LEGPL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53754107|emb|CAH15580.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
          Length = 361

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 185/376 (49%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +     +     C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND---YCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALTLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +           + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  GDI    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGDIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+        EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                 +     CF K R  Q      +   D+   YV F   +  +  GQ  VFY  + 
Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNQHYVMFSNPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGIISGSKR 388
              + LGG  I    R
Sbjct: 349 ---QCLGGATIEQIIR 361


>gi|300023996|ref|YP_003756607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525817|gb|ADJ24286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 397

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 194/374 (51%), Positives = 254/374 (67%), Gaps = 6/374 (1%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                RVVVAMSGGVDSSV AA++K  G+DVIGVTLQLY+   A+ RKGSCCAGQD++DA
Sbjct: 11  PSAKKRVVVAMSGGVDSSVAAAIMKAAGHDVIGVTLQLYDHGSATGRKGSCCAGQDIHDA 70

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV D + + HYV DYE RF   VI  FA SY  GETP+PCV CN  +KF DLL   + L
Sbjct: 71  RRVADALGIPHYVLDYEARFAQKVIESFAESYVHGETPIPCVTCNNEIKFRDLLETAKDL 130

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+VL TGHY++ R     D +    + R +D +RDQSYFLF  T+ QL  L FP+G ++
Sbjct: 131 GAEVLVTGHYVQRR-----DTEHGPELARAVDTDRDQSYFLFGITKAQLAALWFPVGALE 185

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VRDLAR   L +ADKSDSQDICFV  G+Y DV++R+       G+IVHL+G++LGRH
Sbjct: 186 KSEVRDLARSFNLPVADKSDSQDICFVPTGRYTDVIERLKPNALDAGNIVHLDGRVLGRH 245

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI++YT+GQRRG+ +   EPL+VV LD   + V+VGPR +L    + LR++NWLG+  F
Sbjct: 246 EGIVHYTVGQRRGIKIPAAEPLYVVRLDAAKNEVVVGPRSALTTTGLILRDVNWLGENSF 305

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            ++  +G + FV++RSSQ      V  + + G  V+    E G+A+GQACVFY S    A
Sbjct: 306 AESARNGLELFVRMRSSQKLRAALVTADGETGGKVELHDGEEGIATGQACVFYASQEPGA 365

Query: 376 RVLGGGIISGSKRS 389
           RVLGGG I+ + ++
Sbjct: 366 RVLGGGWIAKTVKA 379


>gi|309388972|gb|ADO76852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium praevalens DSM 2228]
          Length = 360

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 219/371 (59%), Gaps = 15/371 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
            +V++AMSGGVDSSV AALLK +GY+VIG T+ ++ +  +A+ R+  CC+   V DA+RV
Sbjct: 2   KKVMIAMSGGVDSSVAAALLKEEGYEVIGGTMHIFPDYEEATDREDHCCSYSAVRDAKRV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H+VF+  E F+  VI  F   Y+ G TP PCV CN+ +KF+ L     ++G D
Sbjct: 62  AQKLEIPHFVFNLREEFQEKVIDYFVDEYSLGRTPNPCVMCNKEIKFAALHKKAIEIGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY +      +    R I+ + +D  +DQSY L+   Q+QL    FPL +  K  
Sbjct: 122 YIASGHYAKI-----EKENGRYILKKGLDENKDQSYMLYVLNQEQLSQTLFPLSEYTKSE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A+ +G +I +K++SQ+ICFV    Y   +      I+  G I+   G  +G H G+
Sbjct: 177 IREKAKNLGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISNTGPILDSEGNKVGEHEGL 236

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLG++MG P++V  LD   + VIVG  +S+    +   E+N++    FED 
Sbjct: 237 AHYTIGQRRGLGISMGYPIYVTNLDYEKNAVIVGKDKSVFSDGLIAEELNFI---PFED- 292

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   +IR +  PV  ++++  +D V V+FE+++  V  GQ+ VFY  D     VL
Sbjct: 293 IDGRMEVEAQIRYNSFPVKAYIEKIKNDEVKVEFEEAQRAVTPGQSVVFYLGD----LVL 348

Query: 379 GGGIISGSKRS 389
           GGGII  S ++
Sbjct: 349 GGGIIKKSFKN 359


>gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella cf. novicida Fx1]
          Length = 359

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 202/374 (54%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+R+   +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 DYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N D  V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDASVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|319940913|ref|ZP_08015251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805629|gb|EFW02417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 382

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 188/394 (47%), Gaps = 30/394 (7%)

Query: 9   LNSLDLDKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           LN+  L    + M   +VVV +SGGVDSSV A LLK  GY+VIG+ ++ +     S+   
Sbjct: 5   LNARILSGTTEQMSKGKVVVGLSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE--- 61

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            C + QD  DA  V D + +     ++ + +++ V   F   Y+AG TP P + CN  +K
Sbjct: 62  YCSSRQDFIDATSVADVVGIDIEAVNFAKEYKDRVFSNFLEEYSAGRTPNPDILCNSEIK 121

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F   L    ++GAD +ATGHY R +   G DG     + R +D  +DQSYFL   +Q+Q+
Sbjct: 122 FRAFLDHAMRMGADWIATGHYARVQRPEGVDGP--TELLRGIDPGKDQSYFLHRLSQEQI 179

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FP+G+M K  VR +A E+ L  A K DS  ICF+ +  + + + R        G I
Sbjct: 180 ARVLFPVGNMFKTDVRRIAEEISLPNAKKKDSTGICFIGERPFREFLNRYLP--TQPGPI 237

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RES 297
              +G+++G H G+  YT+GQR+G+GV       GEP FV   D  ++ + +        
Sbjct: 238 RTPDGKVVGEHVGLAFYTLGQRKGIGVGGQHDSTGEPWFVAKKDLKTNTLWICQGHDHPW 297

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF---EK 354
           L  H +     +W+     E          V+ R  Q   P  +       +      + 
Sbjct: 298 LLSHELICVRPSWISGHAPEPNTP----VTVRTRYRQPDEPTRLAAVGAQAF-TLDCTDS 352

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            +     GQ+ V Y  D      LGGG I   +R
Sbjct: 353 PQWAATPGQSAVLYQGDV----CLGGGFIDVVER 382


>gi|52424356|ref|YP_087493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52306408|gb|AAU36908.1| TrmU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 400

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 212/392 (54%), Gaps = 29/392 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L++  L +N K  +V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 28  PKLSAEQLAENAK-KKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 83

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 84  CTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKF 143

Query: 127 SDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R R   GDD   R  + R +D  +DQSYFL+  + +Q+
Sbjct: 144 KAFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQV 198

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 199 GQSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEI 256

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES--- 297
             ++G+++GRH+G++ YT+GQR+GLG+         P +V   D  ++ +IV        
Sbjct: 257 RTVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSA 316

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +  R+++W+        + +  +C VK R  Q  +P  +Q  DD  + V F++ +
Sbjct: 317 LLSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQ 372

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           + V  GQ+ VFY  +      LGGG+I    +
Sbjct: 373 IAVTPGQSAVFYQGEV----CLGGGVIETQIK 400


>gi|304313061|ref|YP_003812659.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [gamma proteobacterium HdN1]
 gi|301798794|emb|CBL47027.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [gamma proteobacterium HdN1]
          Length = 387

 Score =  466 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 182/396 (45%), Gaps = 41/396 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGGVDSSV A LL ++GY+V G+ ++ +     ++    C A  D+ DA++
Sbjct: 3   HPKKVIVGMSGGVDSSVAAWLLLQEGYEVEGLFMKNWEEDDGTE---YCTALTDLADAQQ 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V DT+ +  +  ++   + + V   F + Y  G TP P + CN+ +KF   L     LGA
Sbjct: 60  VADTLGIRLHTANFAAEYWDRVFEYFLAEYKGGRTPNPDILCNKEIKFRAFLDYALTLGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRR-RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           D +ATGHY         +G      +C+ +D  +DQSYFL A + +QL    FPLG M K
Sbjct: 120 DAIATGHYATRGRNTQTEGGGEIAELCKGVDSNKDQSYFLHAVSGKQLAKTLFPLGKMLK 179

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A+E G     K DS  ICF+ + ++ D +++     A  G IV  +G ++G H 
Sbjct: 180 PEVRRIAKEQGFTNHAKKDSTGICFIGERRFRDFLQQYIP--AQPGQIVSESGAVVGEHQ 237

Query: 258 GIINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G++ YT          G+  A   P +V++ D + +++++G       L    +    I 
Sbjct: 238 GLMYYTIGQRQGIGIGGIKDADENPWYVLHKDLDKNQLLIGQGNDHPRLFSRTLNASRIE 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-------------------GVYV 350
           W+        ++    C  K R  Q      V                        G+ V
Sbjct: 298 WVSGKPPSLPLI----CTAKTRYRQPDQSCTVSAMPHNPSLNAGHEPFAEAQGEPYGISV 353

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            F++ +  V  GQ  VFY  D      LGGG I  +
Sbjct: 354 HFDEPQRAVTPGQYVVFYQGDV----CLGGGPIEST 385


>gi|254462137|ref|ZP_05075553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678726|gb|EDZ43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 381

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/386 (51%), Positives = 253/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  AT+LNSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDTATKLNSLGFAKAPSDTRVVVAMSGGVDSSVVAAQLASEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G  +  +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GPEKAELHAAADGARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            Q+QL  LRFPLG +  K++ R+LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 KQEQLDFLRFPLGHLPSKDATRELAAKFGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESL 298
           A  GDIV   G +LG+H G+I+YTIGQRRGLG+   E PL+VV LD +   VIVGP+E L
Sbjct: 236 AEAGDIVDTEGNVLGKHEGVIHYTIGQRRGLGIGGLETPLYVVRLDVDLKHVIVGPKELL 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEV 357
               I +REINWLGD        + +   V++RS++ P P  ++   D    V+    E 
Sbjct: 296 STRTIPVREINWLGDAPLSSK--EEWHVLVRVRSTRPPRPAIIRPISDVEATVELLTPED 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY +DS   R+ GGG I
Sbjct: 354 GVSPGQACVFYDTDS--TRIFGGGWI 377


>gi|303234693|ref|ZP_07321321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna BVS033A4]
 gi|302494176|gb|EFL53954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna BVS033A4]
          Length = 366

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 206/380 (54%), Gaps = 24/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++        G C A +D  DA
Sbjct: 2   DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +L
Sbjct: 59  VAVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R  +  GDDG +   + R +D  +DQ+YFL   TQ Q+ ++ FP+G+++
Sbjct: 119 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQ 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+H
Sbjct: 174 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 231

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
           NG++ +TIGQRRGLG+   G   FV   +  ++ +IV   E    L  +++Y  +     
Sbjct: 232 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQF---- 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +        + F C  K R  Q  +   V+  DD  V V+++ +   V  GQA VFY  +
Sbjct: 288 ETSLNHLDRNEFDCTAKFRYRQKDIRAHVKFIDDTHVEVNYDDT-KAVTPGQAAVFYDGE 346

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 +G  II      D 
Sbjct: 347 V----CIGSAIIDEVYNGDK 362


>gi|257413240|ref|ZP_04742446.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis L1-82]
 gi|257204162|gb|EEV02447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis L1-82]
 gi|291539633|emb|CBL12744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis XB6B4]
          Length = 363

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 202/374 (54%), Gaps = 16/374 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQ 71
           ++K     +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC   
Sbjct: 1   MEKRMAAKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLS 60

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V DARRV D + + +YV ++++ F+  V+  F + Y  G TP PC+ CNR VK+  LL+
Sbjct: 61  AVDDARRVADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLN 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +  +GAD +ATGHY R           R  +   +   +DQ+Y L+  TQ+QL     P
Sbjct: 121 RSLAIGADYIATGHYARIEQLS----NGRYAIKNSVTAVKDQTYALYNLTQEQLSHTLMP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNG 250
           +G   K+ +R +A E+GL +A K DSQ+ICF+    Y   + R     +   G+ V  +G
Sbjct: 177 VGAYHKDEIRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDG 236

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ++G+H GI +YTIGQR+GLG+A G P+FV  +   ++ V++G    +  + +    IN+
Sbjct: 237 TVVGKHKGITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINF 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
           +     +D ++       KIR S       V R  +D ++ +F +    V  GQA V Y 
Sbjct: 297 MSIPDIQDEML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYD 352

Query: 370 SDSNEARVLGGGII 383
            +     V GGG I
Sbjct: 353 GE----YVAGGGTI 362


>gi|225376291|ref|ZP_03753512.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM
           16841]
 gi|225211937|gb|EEG94291.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM
           16841]
          Length = 358

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 201/367 (54%), Gaps = 16/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78
            +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++        ++ G CC    V DARR
Sbjct: 3   KKVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQDEDEFTQEKNGGCCGLSAVNDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + + +YV ++++ F+  V+  F + Y  G TP PC+ CNR VK+  LL  +  +GA
Sbjct: 63  VADRLEIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLDRSLAIGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R           R  +   +  E+DQ+Y L+  TQ QL     P+GD  K+
Sbjct: 123 DYIATGHYARVEQLP----NGRYAIKNSVTAEKDQTYALYNLTQTQLSRTLMPVGDYHKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
            +R +A E+GL +A K DS +ICF+    Y   + K     +   G+ V  +G+ILGRH 
Sbjct: 179 EIRQIAEEIGLMVAHKKDSMEICFIPDDDYAGFIDKECGKLVPPPGNFVSTDGKILGRHK 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YT+GQR+GLG+A+G P+FV  +   ++ V++G  E +    +Y   +N++      
Sbjct: 239 GITHYTVGQRKGLGIALGYPVFVTEIRPETNEVVLGSNEDVFTTELYADHVNFMSLPD-- 296

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +    +   KIR S       V R  +D ++  FE+    V  GQA V Y  D     
Sbjct: 297 --IDGEMELKAKIRYSHSGSMCKVTRTGEDQIHCVFEEPVRAVTPGQAVVLYDGDYIA-- 352

Query: 377 VLGGGII 383
             GGG+I
Sbjct: 353 --GGGVI 357


>gi|255320585|ref|ZP_05361763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262378583|ref|ZP_06071740.1| tRNA methyl transferase [Acinetobacter radioresistens SH164]
 gi|255302347|gb|EET81586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262299868|gb|EEY87780.1| tRNA methyl transferase [Acinetobacter radioresistens SH164]
          Length = 377

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L    +LGAD
Sbjct: 59  CDRIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVKLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGETKYNSQGEAYAELLRGVDTNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+GL  A K DS  ICF+ + ++ D +K+     A  G IV  +G+ +G H+G
Sbjct: 179 QVRKIAEELGLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDDGKEVGEHHG 236

Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT          GL  A     FV+Y D   +R++VG       ++   ++   I+W
Sbjct: 237 LMYYTLGQRGGIGIGGLKGAAEGAWFVLYKDIAGNRLVVGQGHEHPLMQSTILWSEAIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVF 367
           +     ++    G +C  K R  Q      V ++D    GV V+F+  +  V  GQ+ VF
Sbjct: 297 VAGE--QEIPASGLRCTAKTRYRQADQDCTVYKDDSSTQGVRVEFDDPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSGEV----CLGGGVIHHT 369


>gi|160940314|ref|ZP_02087659.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436894|gb|EDP14661.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC
           BAA-613]
          Length = 351

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 137/360 (38%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDSSV A LLK  GYDVIGVT+Q++        + +G CC    V DARRV   + 
Sbjct: 1   MSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTEVQEAEGGCCGLSAVDDARRVAMDLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + +YV +++E FR  V+  F   Y  G TP PC+ CNR VK+  LL  +  +GAD +ATG
Sbjct: 61  IPYYVMNFKEEFRKNVMDYFVGEYVEGRTPNPCIACNRHVKWESLLRRSMAIGADYIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY +     G     R  +   +   +DQ+Y L+  TQ+QL     P+G   KE +RD+A
Sbjct: 121 HYAQIDRLPG----GRYSLKTSVTAAKDQTYALYNLTQEQLSHTLMPVGSYHKEEIRDMA 176

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
           + +GL +A K DSQ+ICF+    Y   ++         G+ V L+G++LGRH GI +YT+
Sbjct: 177 KRLGLPVAHKPDSQEICFIPDHDYASFIEEYTGRELPPGNFVDLDGRVLGRHRGITHYTV 236

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQR+GL ++MG P+FVV +   ++ V++G  E +  + +   ++NW+             
Sbjct: 237 GQRKGLNLSMGRPVFVVEIRPETNEVVIGNNEDVFTNVLRCDKLNWMAVDGLHGKP---M 293

Query: 325 KCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
               KIR S    P  + +  DD V   F +    V  GQA VFY  D     V GGG I
Sbjct: 294 DVMAKIRYSHRGSPCTIREIGDDMVECCFHEPVRAVTPGQAVVFYDGD----YVAGGGTI 349


>gi|160931216|ref|ZP_02078618.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
 gi|156869771|gb|EDO63143.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
          Length = 357

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 145/368 (39%), Positives = 200/368 (54%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
             +V++ MSGGVDSSV A LL + GYDV GVT++L  +   A  + G CC+  D+ DARR
Sbjct: 2   KKKVMLGMSGGVDSSVAALLLLQQGYDVTGVTMKLRPDQYMAESQSGGCCSLDDIDDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + H V ++ + F   VI  FAS Y AG TP PC+ CN  VKF  LL     L  
Sbjct: 62  VAYRLGIEHLVLNFTQVFSEKVIDYFASEYLAGRTPNPCIACNAHVKFDALLRKALSLEY 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      +  + + R ++ +     +DQSY L+  TQ QL     PL  M+K 
Sbjct: 122 DYVATGHYA----VITQNDEGRWLLKKAPC-SKDQSYVLYHLTQHQLAHTLMPLAGMEKS 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R+LARE GL +A K DSQ+ICFVQ   Y   ++R        G+ +   G +LG H G
Sbjct: 177 EARELAREAGLPVAHKPDSQEICFVQDNDYASFIRRYTGKEPPPGNFIDQAGNVLGTHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG++ G+P+FV  +D  S+ V +G   S     +   ++N +     E 
Sbjct: 237 ITHYTIGQRKGLGISFGKPMFVTKIDPISNTVTLGENGSQYASSLIAGKVNLISADTLEA 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +       VK+R    P P  +   D+G + VDF++ +  V  GQA VFY  D     V
Sbjct: 297 PIS----AQVKVRYQAPPAPARLTPLDNGKIRVDFQEPQRSVTPGQAAVFYDGD----LV 348

Query: 378 LGGGIISG 385
           LGGGII  
Sbjct: 349 LGGGIIET 356


>gi|262278275|ref|ZP_06056060.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258626|gb|EEY77359.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus
           RUH2202]
          Length = 377

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 197/379 (51%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L     LGAD
Sbjct: 59  ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAITLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV   G+ +G H+G
Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236

Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT          GL  A     FV++ D  ++R+++G       ++  +++   I+W
Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVF 367
           +     ++   +G +C  K R  Q      V   + ++ GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFNDENSEHGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSDEV----CLGGGVIHHT 369


>gi|157964381|ref|YP_001499205.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia massiliae MTU5]
 gi|157844157|gb|ABV84658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia massiliae MTU5]
          Length = 374

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 244/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 16  KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 76  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 135

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 136 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 190

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 191 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 250

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 251 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 310

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F  +E  VA GQACV Y  +    RV
Sbjct: 311 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 363

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 364 LGGGWITREIR 374


>gi|163731902|ref|ZP_02139349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter litoralis Och 149]
 gi|161395356|gb|EDQ19678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter litoralis Och 149]
          Length = 380

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 186/386 (48%), Positives = 249/386 (64%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  +  LNSL   K P   RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDPSPMLNSLGFAKPPAQTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV + +   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ +      G     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKS-----GPCGAELHSAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  KE  R LA + GL +A+K DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPNGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV ++G++L  H+G+IN+TIGQRRGLG+  +  PL+V+ LD  + +V+VGP+  L
Sbjct: 236 AAPGNIVDVDGRVLATHDGVINFTIGQRRGLGIGGLATPLYVIKLDAQTRQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD   +    D +   VK+RS++ P    ++  ++    V+    E 
Sbjct: 296 STRTVPVREINWLGDEPLQSR--DEWHLAVKVRSTRPPTDAIIRPISETEATVELTSPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY +DS  +R+ GGG I
Sbjct: 354 GVSPGQACVFYDTDS--SRIYGGGWI 377


>gi|291519700|emb|CBK74921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 354

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 140/367 (38%), Positives = 210/367 (57%), Gaps = 15/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
           M+ ++AMSGGVDSSV A L+K +GY+ IG T++LY N         +CC+  DV DA+ V
Sbjct: 1   MKALIAMSGGVDSSVAALLMKENGYECIGCTMKLYGNEDVDLSDTSTCCSLDDVQDAKDV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + HY ++++++F+  VI  F   Y    TP PC++CN+ +KF +L    ++LG D
Sbjct: 61  ARKLGMLHYTWNFKDQFKEKVIDNFTYCYEHAMTPNPCIECNKHLKFCELYRRAKELGCD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R R    D+G     + +  D  +DQSY L++ TQ +L    FPLG+  K+ 
Sbjct: 121 KIVTGHYARVRKC--DNG---YQLLKGKDASKDQSYVLYSMTQDELAHTDFPLGEYSKDE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A +     A+K DSQDICFV  G Y   +KR        GD V + G +LGRH G+
Sbjct: 176 IRRIAEKNEFVNANKPDSQDICFVPNGDYVSALKRFTGKEYEPGDFVDMEGNVLGRHKGL 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG++   PL+VV LD   ++V++G  E L    +Y+ +INW+G     + 
Sbjct: 236 VCYTIGQRKGLGISAAYPLYVVKLDTEKNQVVLGKNEDLFSRDVYVEDINWIG----PEE 291

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + + F+C  K+R      P  VQR       + F++ +  +  GQ+ VFY  +     VL
Sbjct: 292 LPETFRCAAKVRYRMVEQPCEVQRLGKTSAKILFDEPQRAITPGQSAVFYDGEI----VL 347

Query: 379 GGGIISG 385
           GGGII  
Sbjct: 348 GGGIIKS 354


>gi|291527010|emb|CBK92596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale M104/1]
          Length = 362

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 201/369 (54%), Gaps = 15/369 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K+  +G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YV +++  F+  VI  F S Y    TP PC+ CNR VK+  LL  + ++G
Sbjct: 62  RVAAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +   +  E+DQ+Y L+  TQ+QL     P+G+ +K
Sbjct: 122 ADYIATGHYARIAQLP----NGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R +A E GL +A KSDSQDICFV    Y   ++         G+ V  +G ILGRH 
Sbjct: 178 PQIRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+I+YTIGQR+GLG+    PLFV  L   ++ V++   ESL     Y+ +IN++     +
Sbjct: 238 GLIHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----Q 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   K+R S       +   ++G +   F++ +  +  GQA VFY        
Sbjct: 294 DHITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFYQD----GH 349

Query: 377 VLGGGIISG 385
           VL GG I  
Sbjct: 350 VLCGGTIEK 358


>gi|315652097|ref|ZP_07905095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315485589|gb|EFU75973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 363

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDV GVT+Q++ S       GS  CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   I + +YV ++ + F++ VI  F + Y    TP PC+ CNR VK+  LL  +  L
Sbjct: 62  RRVARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMML 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  +       +DQ+Y L+  TQ QL     P+GD +
Sbjct: 122 GADYIATGHYARIEKL----ENGRYALRTSKTSAKDQTYALYNLTQDQLSRTLMPVGDYE 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R++A++  L +A+K DSQ+ICFV    Y   V+        EG+ V  +G+ILG+H
Sbjct: 178 KDEIREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPEGNFVTADGEILGKH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI++YTIGQR+GLG+A+G P+FV  +  +++ V++G  E +  + +    +N     + 
Sbjct: 238 KGILHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLN----AMA 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            +   DG +   KIR S       ++   +D + +DF+K    +  GQA V Y       
Sbjct: 294 VEKFFDGMRAVGKIRYSHKGEHCSIKVIGEDRIRIDFDKKVRAITPGQAVVLYD---ESG 350

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 351 LVLGGGTI 358


>gi|15892333|ref|NP_360047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia conorii str. Malish 7]
 gi|20455354|sp|Q92IL0|MNMA_RICCN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15619478|gb|AAL02948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia conorii str. Malish 7]
          Length = 370

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/371 (49%), Positives = 243/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 12  KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 72  VANKLGIPHYVLDYENKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 186

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RV
Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 359

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 360 LGGGWITREIR 370


>gi|52841619|ref|YP_095418.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603374|sp|Q5ZVQ1|MNMA_LEGPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52628730|gb|AAU27471.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|307610092|emb|CBW99633.1| hypothetical protein LPW_14011 [Legionella pneumophila 130b]
          Length = 361

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 185/376 (49%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDSSV A LLK  GY V G+ ++ +     +     C A +D+ DA+ VC+
Sbjct: 4   KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND---YCPAAKDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + + + V   F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +           + +  D E+DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +      +A  G+I    G+ LG+H+G++ 
Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+        EP +VV  D  S+ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                 +     CF K R  Q      +   D+   YV F   +  +  GQ  VFY  + 
Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNQHYVMFSSPQRAITPGQFIVFYEKN- 348

Query: 373 NEARVLGGGIISGSKR 388
              + LGG  I    R
Sbjct: 349 ---QCLGGATIEQIIR 361


>gi|205821554|sp|A8F172|MNMA_RICM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 365

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 244/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F  +E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITREIR 365


>gi|205822104|sp|Q65VV2|MNMA_MANSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 389

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 212/392 (54%), Gaps = 29/392 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L++  L +N K  +V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 17  PKLSAEQLAENAK-KKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 72

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF
Sbjct: 73  CTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKF 132

Query: 127 SDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R R   GDD   R  + R +D  +DQSYFL+  + +Q+
Sbjct: 133 KAFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQV 187

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G+I
Sbjct: 188 GQSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEI 245

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES--- 297
             ++G+++GRH+G++ YT+GQR+GLG+         P +V   D  ++ +IV        
Sbjct: 246 RTVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSA 305

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356
           L    +  R+++W+        + +  +C VK R  Q  +P  +Q  DD  + V F++ +
Sbjct: 306 LLSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQ 361

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           + V  GQ+ VFY  +      LGGG+I    +
Sbjct: 362 IAVTPGQSAVFYQGEV----CLGGGVIETQIK 389


>gi|15895501|ref|NP_348850.1| tRNA-specific 2-thiouridylase MnmA [Clostridium acetobutylicum ATCC
           824]
 gi|24638326|sp|Q97GY2|MNMA_CLOAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15025232|gb|AAK80190.1|AE007723_8 TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           PP-loop ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325509648|gb|ADZ21284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium acetobutylicum EA 2018]
          Length = 355

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 140/367 (38%), Positives = 210/367 (57%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
           + +VV+ MSGGVDSSV A LLK  GYDVIGVT++L       ++++G CC+   V DARR
Sbjct: 2   NKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLTPDDAFYTEQEGGCCSLSAVEDARR 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I +  YV ++ + F+  VI  F   Y  G+TP PC+ CN+ +KF  LL     LGA
Sbjct: 62  VAYRIGIPFYVVNFTDIFKEKVIDYFTEEYLNGKTPNPCIACNKYIKFDALLKKAESLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       +   R ++ +  D ++DQ+Y ++  TQ QL     P GD KK+
Sbjct: 122 DYIATGHYCRIV-----EENGRYVIRKSEDEKKDQTYVMYNMTQDQLKHTLMPCGDYKKD 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++ARE+GL++ DK DS++ICF+    +   +KR        G+ V   G++LG+H G
Sbjct: 177 RIREIAREIGLNVFDKKDSEEICFIPDNDHGGFIKRECPKAVKTGNFVDKEGKVLGKHKG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II YTIGQR+GLG+A G+ +FV  +D   ++V++G  E +  + +   + N++      D
Sbjct: 237 IIYYTIGQRKGLGIATGKRVFVTNIDAMKNQVVIGEEEEIFENELISFKNNFI----PFD 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            + +  +   KIR +       +   DD  V V FEK +  +  GQ+ VFY  D     +
Sbjct: 293 KLTEPMEVDAKIRYNAKASKATIYPVDDENVKVKFEKPQRAITKGQSVVFYDGD----LL 348

Query: 378 LGGGIIS 384
           +GGGII 
Sbjct: 349 VGGGIIK 355


>gi|238922734|ref|YP_002936247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale ATCC 33656]
 gi|238874406|gb|ACR74113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale ATCC 33656]
          Length = 362

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 201/369 (54%), Gaps = 15/369 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++      K+  +G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YV +++  F+  VI  F S Y    TP PC+ CNR VK+  LL  + ++G
Sbjct: 62  RVAAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R           R  +   +  E+DQ+Y L+  TQ+QL     P+G+ +K
Sbjct: 122 ADYIATGHYARIAQLP----NGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R +A E GL +A KSDSQDICFV    Y   ++         G+ V  +G ILGRH 
Sbjct: 178 PQIRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+I+YTIGQR+GLG+    PLFV  L   ++ V++   ESL     Y+ +IN++     +
Sbjct: 238 GLIHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----Q 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + +    +   K+R S       +   ++G +   F++ +  +  GQA VFY        
Sbjct: 294 EHITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFYQD----GH 349

Query: 377 VLGGGIISG 385
           VL GG I  
Sbjct: 350 VLCGGTIEK 358


>gi|238650755|ref|YP_002916609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia peacockii str. Rustic]
 gi|259495838|sp|C4K1W0|MNMA_RICPU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|238624853|gb|ACR47559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia peacockii str. Rustic]
          Length = 365

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K SCCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNSCCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K 
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFMTTKEQLEYLRFPLGGLTKG 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITREIR 365


>gi|83746745|ref|ZP_00943793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum UW551]
 gi|207744291|ref|YP_002260683.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum IPO1609]
 gi|83726514|gb|EAP73644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia solanacearum UW551]
 gi|206595696|emb|CAQ62623.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Ralstonia solanacearum IPO1609]
          Length = 370

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 182/374 (48%), Gaps = 27/374 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD  D   
Sbjct: 2   SGKRVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I+V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADLIDVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+GL  A K DS  ICF+ +  + D + R        G I    G+ +G+H G
Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+G+G+       G+  +V   D  ++ + V        L  H ++  +++W
Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +          +G     K R  Q   P  V    D  + + F +++  V  GQ+ V Y 
Sbjct: 292 VAGH----PPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFTEAQWAVTPGQSAVLYD 347

Query: 370 SDSNEARVLGGGII 383
            +      LGGGII
Sbjct: 348 GEV----CLGGGII 357


>gi|329894882|ref|ZP_08270681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC3088]
 gi|328922611|gb|EGG29946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC3088]
          Length = 361

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 196/378 (51%), Gaps = 27/378 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           NPK  +V+V +SGGVDSSV A  L   G+DV  + ++ ++    ++    C A QD  DA
Sbjct: 2   NPKQ-KVIVGLSGGVDSSVAALCLIEQGFDVEALFMKNWDEDDDTE---YCTAMQDFADA 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V   + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     L
Sbjct: 58  SAVAAALGIVLHGANFAREYWDRVFEYFLAEYRAGRTPNPDILCNKEIKFKAFLDYALNL 117

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R+    G D      + +  D  +DQSYFL     Q L    FPLGDM 
Sbjct: 118 GADFIATGHYART----GLDNAGLTTLQKGADPNKDQSYFLHQVPHQALAKTLFPLGDMH 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR+ A+  GL   DK DS  ICF+ + ++ D +       A  G IV ++G+ LG H
Sbjct: 174 KTEVRERAKAAGLATFDKKDSTGICFIGERRFTDFLSTYLP--AQPGKIVAVSGEELGSH 231

Query: 257 NGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
            G++ +TIGQR+GLG+   +     P +VV  D +++R+IV       SL   R+ + + 
Sbjct: 232 QGLMYHTIGQRQGLGIGGTKDFGDAPWYVVDKDLDNNRLIVAQGNQHPSLFKQRLTVVDP 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W+G     D     F+C  KIR  Q   P  V      + V+F++++  +  GQ+ VFY
Sbjct: 292 FWIGTPPPRD-----FRCSAKIRYRQPDQPCSVSYQGGDLLVEFDQAQRAITPGQSVVFY 346

Query: 369 TSDSNEARVLGGGIISGS 386
             D    R LGGG+I+G+
Sbjct: 347 DGD----RCLGGGVIAGA 360


>gi|110834136|ref|YP_692995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
 gi|123149502|sp|Q0VQ25|MNMA_ALCBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110647247|emb|CAL16723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
          Length = 364

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 186/382 (48%), Gaps = 28/382 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P+D RV+V MSGGVDSSV AA L   GY V G+ ++ +N    +     C A +D+
Sbjct: 1   MTKAPQDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTD---YCTAREDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA +V   + +  +  ++ E++ + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 58  LDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +           +  + R +D  +DQ+YFL A   Q+     FPLG
Sbjct: 118 ITLGADYIATGHYSQVSH------TGKAKLLRAVDTNKDQTYFLHAVDYQKFDRTLFPLG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR +A + G D   K DS  ICF+ + ++ D +++     A  G I   +G ++
Sbjct: 172 DLEKPEVRRIAEQKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGSIEDDHGNVI 229

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H+G++ YT+GQR+GLG+         P +V   D   + +I         L    +  
Sbjct: 230 GQHDGLMYYTLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNS 289

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             + W+      +A     +   K R  Q      V    +G V V F++ +  V  GQ+
Sbjct: 290 APMQWVAL----EAPALPARLTAKTRYRQPDQGCTVSDAGEGRVTVTFDEPQRAVTPGQS 345

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
            VFY         LGG +I  +
Sbjct: 346 VVFYDG----PVCLGGAVIEET 363


>gi|295110441|emb|CBL24394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus obeum A2-162]
          Length = 373

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/366 (40%), Positives = 212/366 (57%), Gaps = 13/366 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78
             + ++AMSGGVDSSV A L+ ++GYD  G TL+LY++ + S     +CC   D  DAR 
Sbjct: 2   QKKAMIAMSGGVDSSVAAYLMVQNGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARS 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + +YVF   + FR++VI  FA +Y  G TP PC+DCNR +KFS LL   R+LG 
Sbjct: 62  VAARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A+GHY R      D    R I+ + +D  +DQSY L+A TQ QL    FPLG   K+
Sbjct: 122 EYIASGHYARRE---QDPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGGYTKK 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A+E G   ADK DSQDICFV  G Y   +++     +  GD V   G++LG+H G
Sbjct: 179 EIRHIAQEQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGKVLGKHKG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
            I+YTIGQRRGLG++  E L+V     +S+ VI+G ++ L  +  Y+ +IN +      D
Sbjct: 239 QIHYTIGQRRGLGISAPESLYVCGKSLDSNEVILGGKQDLMSNYCYINDINLI----PWD 294

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    KC VK R  Q   P  V++  +D + + F++ +  V  GQA V Y  D     V
Sbjct: 295 HLDAPIKCKVKTRYRQPEQPATVEQIGEDLIKITFDEPQRAVTPGQAAVLYDDD----MV 350

Query: 378 LGGGII 383
           LGGG I
Sbjct: 351 LGGGTI 356


>gi|147677391|ref|YP_001211606.1| tRNA-specific 2-thiouridylase MnmA [Pelotomaculum thermopropionicum
           SI]
 gi|205816885|sp|A5D3F0|MNMA_PELTS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146273488|dbj|BAF59237.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Pelotomaculum thermopropionicum SI]
          Length = 365

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 216/371 (58%), Gaps = 15/371 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           +  +VVVAMSGGVDSSV AALL   G++VIG+T+Q++N  + ++ KG   CC+   + DA
Sbjct: 2   EKTKVVVAMSGGVDSSVTAALLLEQGFEVIGITMQIWNPGEEAESKGERTCCSLTAIDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV D + +SHYV ++   F   VI  F S Y  G TP PC+ CNR VKF  LL     +
Sbjct: 62  RRVADKLGISHYVLNFRSIFEEKVIDYFTSEYLRGRTPNPCIACNRYVKFEALLDRALSI 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+ +ATGHY R   Y G+ G  R  + RP+D  +DQ+Y L+  TQ+Q+     PLG+  
Sbjct: 122 GAEYIATGHYARLG-YSGEYG--RYTVRRPVDRRKDQTYVLYGMTQRQIARTMMPLGNYT 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL +A K++SQ+ICF+    Y   ++   AGI   G  +++ G+++GRH
Sbjct: 179 KGQVRKIAEDFGLPVAGKAESQEICFILDDDYRRFLREKAAGI-KPGPFLNMKGEVIGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           NGI  YT+GQRRGLG+A GE L+VV +D  ++ + +GP E++    +   ++N +     
Sbjct: 238 NGIPFYTVGQRRGLGLAAGERLYVVKIDPENNAITLGPEEAVWGRSLIAADVNLI----L 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            +++ +  +   ++R +    P   V   +  V V F   +  +  GQA VFY  D    
Sbjct: 294 YESLEEPLEVEAQVRYNARTSPATLVPLPEGRVGVHFHTPQRSITPGQAVVFYRGD---- 349

Query: 376 RVLGGGIISGS 386
            ++GG  I  +
Sbjct: 350 YLIGGATIEST 360


>gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Francisella cf. novicida 3523]
          Length = 358

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 196/373 (52%), Gaps = 26/373 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ V
Sbjct: 2   PQKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD+I +     ++   + + V   F + Y AG TP P + CN+ +KF   LS    LG D
Sbjct: 59  CDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY ++R            + + +D  +DQ+YFL+   Q+QL    FP+G+++K  
Sbjct: 119 YIATGHYAQTRQAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNVEKSK 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G+
Sbjct: 175 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDGL 232

Query: 260 INYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINWL 311
           + YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W+
Sbjct: 233 MYYTIGQRQGLGIGGVKNRPEVPWFAAKKDLANNVLIAVQGHDHPLLFKQSLQAIELSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                  A    F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY  
Sbjct: 293 AGM----APAGKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDEPQRAITPGQSVVFYID 348

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 349 DV----CLGGGII 357


>gi|159044055|ref|YP_001532849.1| tRNA-specific 2-thiouridylase MnmA [Dinoroseobacter shibae DFL 12]
 gi|205816871|sp|A8LK49|MNMA_DINSH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157911815|gb|ABV93248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 384

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/385 (50%), Positives = 246/385 (63%), Gaps = 12/385 (3%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
             S    LNSL   K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A 
Sbjct: 5   TASLTPALNSLGFAKPPSETRVVVAMSGGVDSSVVAAELACEGYDVVGVTLQLYDHGAAL 64

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            +KG+CCAG+D++DARRV + +   HYV DYE  FR AVI  FA SY  G TP+PC+ CN
Sbjct: 65  AKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLGGATPVPCIRCN 124

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             VKF DLL   R L AD +ATGHYI+ ++     G  +  +    D  RDQSYFLF+TT
Sbjct: 125 ERVKFKDLLETARDLEADCMATGHYIQRKM-----GPAKAELHSAADANRDQSYFLFSTT 179

Query: 182 QQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           Q+QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G  
Sbjct: 180 QEQLDYLRFPLGHLASKAETRALAAKHGLSVADKPDSQDICFVPNGDYASVIEKLRPGAG 239

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLE 299
             G+IV ++G +LG H G+I+YTIGQRRGLG+   E PL+VV LD ++ RVIVGP+E+L 
Sbjct: 240 EPGEIVDMDGTVLGAHRGVIHYTIGQRRGLGIGGLETPLYVVKLDPDARRVIVGPKEALS 299

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              + LREINWLGD          +   VK+RS++ P    ++  +D    V+    E G
Sbjct: 300 TRHVPLREINWLGDAPLSSRA--EWPIAVKVRSTRPPRDAILRPISDTEATVELLTPEEG 357

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           V+ GQACVFY  D    R+ GGG I
Sbjct: 358 VSPGQACVFYDPD--GTRIFGGGWI 380


>gi|34580653|ref|ZP_00142133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia sibirica 246]
 gi|28262038|gb|EAA25542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia sibirica 246]
          Length = 365

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG   K+
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGFTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITREIR 365


>gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
 gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
          Length = 359

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 203/374 (54%), Gaps = 26/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ +      +    C A QD+ DA+ 
Sbjct: 2   ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD+I +     ++   + + V   F   Y AG TP P + CN+ +KF   LS    LG 
Sbjct: 59  VCDSIGIRFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R+R+   +DG  +  + + +D  +DQ+YFL+   Q+QL    FP+G+++K 
Sbjct: 119 NYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A+E  L   DK DS  ICF+ + K+ + + +     A +G+I   NG  +G H+G
Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+   +     P F    D  ++ +  + G     L    +   E++W
Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           +       A  D F+C  K+R  Q      V+ N DG V V F++ +  +  GQ+ VFY 
Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 DDV----CLGGGVI 358


>gi|153813145|ref|ZP_01965813.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174]
 gi|149830800|gb|EDM85890.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174]
          Length = 375

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 151/366 (41%), Positives = 210/366 (57%), Gaps = 13/366 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78
             + ++AMSGGVDSSV A L+ ++GYD  G TL+LY++ + S     +CC   D  DAR 
Sbjct: 12  QKKAIIAMSGGVDSSVAAYLMVKEGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARS 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + +YVF   + FR++VI  FA +Y  G TP PC+DCNR +KFS LL   R+LG 
Sbjct: 72  VAARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGC 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A+GHY R      D    R I+ + +D  +DQSY L+A TQ QL    FPLG   K+
Sbjct: 132 EYIASGHYARRE---QDPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGSYTKK 188

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A++ G   ADK DSQDICFV  G Y   +++     +  GD V   G +LG+H G
Sbjct: 189 EIRHIAQKQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGNVLGKHKG 248

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
            I+YTIGQRRGLG++  E L+V     +S++VI+G ++ L     Y+ +IN +      D
Sbjct: 249 QIHYTIGQRRGLGISAPESLYVCGKSLDSNKVILGGKQDLMSTCCYINDINLI----PWD 304

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    KC VK R  Q   P  V+   DD + + FE+ +  V  GQA V Y  D     V
Sbjct: 305 HLDKPIKCKVKTRYRQPEQPATVEQLGDDLLKITFEEPQRAVTPGQAAVLYDGD----MV 360

Query: 378 LGGGII 383
           LGGG I
Sbjct: 361 LGGGTI 366


>gi|113869080|ref|YP_727569.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia eutropha H16]
 gi|123133633|sp|Q0K720|MNMA_RALEH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113527856|emb|CAJ94201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ralstonia eutropha H16]
          Length = 361

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 179/373 (47%), Gaps = 26/373 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V
Sbjct: 5   GKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVVSV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+
Sbjct: 62  ADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 122 TIATGHYARVRQ----NAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTR 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A E+GL  A K DS  ICF+ +  + D + R        G +    G+++G H G+
Sbjct: 178 VREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGL 235

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT+GQR+G+G+       G+  +V   D  ++ + V        L    +   +++W+
Sbjct: 236 AFYTLGQRKGIGLGGSREGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLTASDLSWV 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
                            K R  Q      VQ  D D + + F +++  V  GQ+ V Y  
Sbjct: 296 AGEPPAAGAAMAA----KTRYRQSDAACTVQAVDGDALTLRFAEAQWAVTPGQSAVLYDG 351

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 352 DI----CLGGGII 360


>gi|126207646|ref|YP_001052871.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae
           L20]
 gi|205811077|sp|A3MYN0|MNMA_ACTP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126096438|gb|ABN73266.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 389

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 209/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R     GDD   +  + R +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 DPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|187478638|ref|YP_786662.1| tRNA-specific 2-thiouridylase MnmA [Bordetella avium 197N]
 gi|123514648|sp|Q2KZ71|MNMA_BORA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115423224|emb|CAJ49755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella avium 197N]
          Length = 370

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 184/378 (48%), Gaps = 28/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ DA  
Sbjct: 7   KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAAS 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 64  VADLIGVEFEYVNFASEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R      G +R  + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 124 EHIATGHYARVRAVDTARG-QRFQLLKALDASKDQSYFLHRLNQAQLSRTLFPLGELHKT 182

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+GL  A K DS  ICF+ +  + + + R        G I+   G+ LG+H+G
Sbjct: 183 EVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLPTA--PGPILTPEGRRLGQHHG 240

Query: 259 IINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +  YT+GQR+GLG+             +  +    D  ++ + V        L    +  
Sbjct: 241 LAFYTLGQRKGLGIGGVKGQQREDGTADAWYSARKDLKNNALYVVQGHDHPWLLSDTLRA 300

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           +++NW+                 K R  Q   P  ++ ++ G  + F +++  V  GQ+ 
Sbjct: 301 QDVNWVDGEAPAAGAYAA-----KTRYRQADAPCELRADEAGFDLSFAQAQWAVTPGQSA 355

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y  D      LGGGII
Sbjct: 356 VLYDGDV----CLGGGII 369


>gi|313905756|ref|ZP_07839115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cellulosolvens 6]
 gi|313469362|gb|EFR64705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cellulosolvens 6]
          Length = 363

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 206/372 (55%), Gaps = 13/372 (3%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVY 74
           + KD  VVV MSGGVDSSV A LLK  GY+VIGVT+Q++        + +G CC    V 
Sbjct: 2   SNKDKTVVVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDESECRLENEGGCCGVTAVE 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DARRV   + + +YV +++E F+  VI  F   Y  G TP PC+ CNR VK+  LL+ + 
Sbjct: 62  DARRVAGVLGIPYYVMNFKEEFQKNVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTKSL 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            +GAD +ATGHY R R         R  +   +  ++DQ+Y L+  TQ QL     P+GD
Sbjct: 122 AIGADYIATGHYARIRHLD----NGRYAIANSVTAKKDQTYALYGLTQNQLAHTLMPVGD 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            +K  VR++A   GL +A KSDSQ+ICFV  G Y   ++R +  +  EG+ V  +G++LG
Sbjct: 178 YEKPKVREIAERAGLPVAHKSDSQEICFVPDGDYASFIERDSGIVMPEGNFVTKDGEVLG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH GI +YT+GQRRGL + MG  +FV  +   ++ V+VG  E +    +    +N++G G
Sbjct: 238 RHRGITHYTVGQRRGLDLPMGRRVFVTEIRPETNEVVVGEAEDVWSETLKANRLNFMGIG 297

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  D F    KIR +       V+R  +D +   F+     V  GQA VFY  D  
Sbjct: 298 DLPLGEEDHF--LAKIRYNHAGTGCRVKRTGEDEITCVFDDPVRAVTPGQALVFYKDD-- 353

Query: 374 EARVLGGGIISG 385
              V GGG+I  
Sbjct: 354 --YVAGGGVIVS 363


>gi|259416977|ref|ZP_05740897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter sp. TrichCH4B]
 gi|259348416|gb|EEW60193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter sp. TrichCH4B]
          Length = 381

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/386 (50%), Positives = 255/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     +NSL   K+P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLAEQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G+    +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GEHGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G IVH +G++LG HNG+I+YTIGQRRGLG+  + EPL+VV LD +  +VIVGP++ L
Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKKVIVGPKDML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              R+ +REINWLGD  F       +   VK+RS++ P    ++  +D    V+   +E 
Sbjct: 296 ATRRVPVREINWLGDEPFTSRT--EWHLSVKVRSTRPPRDAIIRPISDTEAEVELFSAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  D N +R+ GGG I
Sbjct: 354 GISPGQACVFY--DPNGSRIFGGGWI 377


>gi|268608557|ref|ZP_06142284.1| tRNA-specific 2-thiouridylase MnmA [Ruminococcus flavefaciens FD-1]
          Length = 358

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 147/368 (39%), Positives = 211/368 (57%), Gaps = 15/368 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDVYDAR 77
            +V+V MSGGVDSSV A LL+  GYDV+GVTL+L++      A K   +CCA  DV DAR
Sbjct: 2   KKVMVGMSGGVDSSVAAMLLREQGYDVMGVTLKLFSDEDIDQAQKEGKTCCALSDVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V   +   H VF++++ FR  V+  F+ SY  G TP PC++CNR VKF  +L    +L 
Sbjct: 62  SVARRLGFEHLVFNFKDNFREHVMKQFSDSYLCGRTPNPCIECNRHVKFDKMLRRALELE 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY        D+ + R ++ R  D  +DQ+Y L++ TQ+QL    FPLG + K
Sbjct: 122 YDYIATGHYAVCEY---DEERGRWLLKRSADRSKDQTYVLYSLTQEQLSHTLFPLGSLDK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR+LA + GL  ++K DSQDICFV  G Y   ++R        G+ V + G++LG H 
Sbjct: 179 TQVRELAEKAGLVNSNKPDSQDICFVPDGDYAGFIRRFTGTDVPHGNFVDMEGKVLGEHK 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GIINYT+GQR+GLG+++G+P +VV  D +++ V +G    L    +   + N +      
Sbjct: 239 GIINYTVGQRKGLGISLGKPAYVVKKDVDTNTVTLGDESDLYTKTLIADDFNLISVA--- 295

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376
             + +  +   K R SQ+  P  V    +G Y V+F++ +  V SGQA V Y  D     
Sbjct: 296 -ELTEPMRVTAKTRYSQNEQPATVSYLGNGEYMVEFDQPQRAVTSGQAVVLYDGDI---- 350

Query: 377 VLGGGIIS 384
           V+GGG I 
Sbjct: 351 VVGGGTIK 358


>gi|126736443|ref|ZP_01752184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. CCS2]
 gi|126713981|gb|EBA10851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. CCS2]
          Length = 379

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/380 (50%), Positives = 249/380 (65%), Gaps = 12/380 (3%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           + LNSL   K+P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+
Sbjct: 5   SPLNSLGFAKSPAQTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKGA 64

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAG+D++DARRV + +   HYV DYE  FR AV+  FA SY  G TP+PC+ CN  VKF
Sbjct: 65  CCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVKF 124

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL   + L AD +ATGHYI+  +     G     +    D  +DQSYFLF+TTQ QL 
Sbjct: 125 KDLLETAKDLDADCMATGHYIQRMM-----GANGAELHSAADPTKDQSYFLFSTTQDQLD 179

Query: 187 DLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            LRFPLG    KE  R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G+I
Sbjct: 180 YLRFPLGHHASKEETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGNI 239

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           V  +G++LG H G+I+YTIGQRRGLG+  + +PL+VV LD +   VIVGP++ L   R+ 
Sbjct: 240 VDTDGKVLGTHKGVIHYTIGQRRGLGIGGLADPLYVVKLDVDRKEVIVGPKDLLATRRVP 299

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
           +REINW+GDG   D  +   +  V++RS++ P    ++  ++    V+   +E GV+ GQ
Sbjct: 300 IREINWIGDGNLMD--MGERQIAVRVRSTRPPTDAVLRPISETEAEVELLVAEQGVSPGQ 357

Query: 364 ACVFYTSDSNEARVLGGGII 383
           ACVFY  DS   RVLGGG I
Sbjct: 358 ACVFYDPDS--TRVLGGGWI 375


>gi|296135318|ref|YP_003642560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas intermedia K12]
 gi|295795440|gb|ADG30230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas intermedia K12]
          Length = 368

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 178/377 (47%), Gaps = 26/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK+ GY V+G+ ++ +     S+    C   QD  DA  V D 
Sbjct: 9   VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSE---YCSTRQDWLDAASVADR 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++   ++  V   F   YAAG TP P V CN  +KF   L    +LGAD +A
Sbjct: 66  IGIDIEAVNFAAEYKERVFADFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R     +      + R +D  +DQSYFL    Q QL    FP+G++ K  VR 
Sbjct: 126 TGHYARVR-----ETDHGFELLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GL  A K DS  ICF+ +  + D + R        G +    G+ +G+H G+  Y
Sbjct: 181 VAEAIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGQHLGLAFY 238

Query: 263 TIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           T+GQR+G+G+       GEP FV   D   +++IV        L  H +     +W+   
Sbjct: 239 TLGQRKGIGLGGSKSSNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWVSGT 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +          K R  Q       Q +  +   + F+  +  V  GQ+ V Y  +  
Sbjct: 299 APAEGACG---YGAKTRYRQVDAACRFQYQGPERFTLKFDAPQWAVTPGQSAVLYDGEV- 354

Query: 374 EARVLGGGIISGSKRSD 390
               LGGGII  + R+D
Sbjct: 355 ---CLGGGIIEAASRND 368


>gi|56696559|ref|YP_166916.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria pomeroyi DSS-3]
 gi|81349989|sp|Q5LST9|MNMA_SILPO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56678296|gb|AAV94962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria pomeroyi DSS-3]
          Length = 375

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 194/379 (51%), Positives = 249/379 (65%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A  +KG+C
Sbjct: 2   PLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAALAKKGAC 61

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ CN  VKF 
Sbjct: 62  CAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFK 121

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT +QL  
Sbjct: 122 DLLETARDLEADCMATGHYIQRKM-----GPNGPELHCAEDANRDQSYFLFSTTPEQLDY 176

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G A  G+IV
Sbjct: 177 LRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIV 236

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           H +G++LG H G+I+YTIGQRRGLG+  + EPL+VV LD +  +V+VGP+E L    I +
Sbjct: 237 HADGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVRLDVDRKQVVVGPKELLATRTIPV 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD  F       +   VK+RS++ P    V+  ++    V+    E GV+ GQA
Sbjct: 297 REINWLGDAPFTSRP--EWHLSVKVRSTRPPREAIVRPISETEAEVELLTPEEGVSPGQA 354

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY SD   +R+ GGG I
Sbjct: 355 CVFYESD--GSRIFGGGWI 371


>gi|83942322|ref|ZP_00954783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. EE-36]
 gi|83846415|gb|EAP84291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. EE-36]
          Length = 380

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 188/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P D RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG+CCAG D++DARRV +++   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G DG     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GPDGAE---LHCAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV  +G +L +H+G+INYTIGQRRGLG+  + +PL+VV LD ++++V+VGP+  L
Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + ++EINWLGD          +   V++RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRTVPVKEINWLGDTPL--MSQSEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  +S   R+ GGG I
Sbjct: 354 GISPGQACVFYDPES--TRIFGGGWI 377


>gi|148656262|ref|YP_001276467.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus sp. RS-1]
 gi|205816909|sp|A5UV64|MNMA_ROSS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148568372|gb|ABQ90517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseiflexus sp. RS-1]
          Length = 373

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 152/378 (40%), Positives = 208/378 (55%), Gaps = 22/378 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++VAMSGGVDSS+ AALL   G+DV GVTL L+        +  CC+ +    ARRVC 
Sbjct: 3   KIMVAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YVF+Y+  FR  VI  F   YA+G TP PC++CNR +KF  LL+  R LG D +
Sbjct: 63  QLGIPYYVFNYQREFRRYVIEYFLREYASGFTPNPCLECNREIKFRALLARARTLGFDYV 122

Query: 142 ATGHYIRSR----LYVGDDGK---------RRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ATGHY R R     + G+D               + R +D E+DQSY L+   Q  L  L
Sbjct: 123 ATGHYARIRADETRHNGEDAGLPPAERAQRTTYRLLRAVDREKDQSYMLYMLGQDDLARL 182

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G+  K  VR +A   GL  A++ +SQDICFV  G Y ++++         G I+ L
Sbjct: 183 IFPIGEYTKAEVRAMAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDL 242

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G+ +GRH G+  YTIGQRRGLG+A G+P++V  LD   + VIVGP  +L    +    +
Sbjct: 243 EGREVGRHQGLPLYTIGQRRGLGIATGQPMYVTALDVARNAVIVGPESALRRESLRAEWV 302

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
            ++     E      F C  +IR+  D VP  V   + G V V F + +  V  GQA VF
Sbjct: 303 TFVSGMWPE----APFDCLAQIRAHADAVPARVIPGEAGTVDVHFSRPQRAVTPGQAIVF 358

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  D     VLGGG I+ 
Sbjct: 359 YDGDV----VLGGGRIAR 372


>gi|67458888|ref|YP_246512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia felis URRWXCal2]
 gi|75536671|sp|Q4UM73|MNMA_RICFE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|67004421|gb|AAY61347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia felis URRWXCal2]
          Length = 365

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG + K+
Sbjct: 127 AQLATGHYVRK--VNGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I  G +  G I+H+NG  LG H+G
Sbjct: 182 ETRRLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGASESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    ++ INWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALHVQEFIIKNINWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + + +DD + V F   E  VA GQACV Y  +    RV
Sbjct: 302 ---EKLEVEVKIRSTRPPRLAEISKLDDDKMKVKFLSEEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITRDIR 365


>gi|237749060|ref|ZP_04579540.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
 gi|229380422|gb|EEO30513.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
          Length = 367

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 182/384 (47%), Gaps = 33/384 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VV+ MSGGVDSSV A LLK  GY+V+G+ ++ +      +    C A QD  DA  
Sbjct: 2   SKKKVVIGMSGGVDSSVSAWLLKEQGYEVVGLFMKNWEDDDDGE---YCSARQDWLDAVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I V   V ++   ++  V   F   Y AG TP P V CN  +KF   L     LGA
Sbjct: 59  VADVIGVDIEVVNFAAEYKERVFSEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAVSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R     +      + + +D  +DQSYFL    Q+QL    FPLG+++K 
Sbjct: 119 EQIATGHYARVR-----ENNGLFELMKAVDDTKDQSYFLHRLNQKQLSKAIFPLGEIRKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ +  +   + R  +     G I    G+ +G+H G
Sbjct: 174 EVRKIAEKLGLPNAKKKDSTGICFIGERPFRAFLNRYLSYE--PGPIKTPEGKEIGQHVG 231

Query: 259 IINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +  YTIGQR+G+G+             +  +V   D  ++ + V        L    +  
Sbjct: 232 LSFYTIGQRKGIGIGGLKSFKNPDGTSDAWYVARKDIQNNTLYVVQGHDHPWLLSPELIA 291

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
            + +W+     E+         VK R  Q  V   +  + DD   V+F+  +  V  GQ+
Sbjct: 292 TQSSWIAGFSPENQA-----LSVKTRYRQKDVAGTLNVKGDDAFSVNFDAPQWAVTPGQS 346

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            VFY  D      LGGGII  + +
Sbjct: 347 AVFYKGDV----CLGGGIIDNNSK 366


>gi|114768812|ref|ZP_01446438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HTCC2255]
 gi|114549729|gb|EAU52610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HTCC2255]
          Length = 382

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/386 (48%), Positives = 257/386 (66%), Gaps = 11/386 (2%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +++     LNS+   K+PKD RV+VAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 4   IMIQNTKALNSMGFAKDPKDTRVLVAMSGGVDSSVVAAMLSEEGYDVVGVTLQLYDHGAA 63

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG+D+ DARRV + +   HYV DYE +F+ +VI  FA +Y AG TP+PC+ C
Sbjct: 64  LAKKGACCAGRDIQDARRVAEEMGFPHYVLDYENKFKESVIDEFADAYLAGATPVPCIRC 123

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+  +  G     +  + +  D +RDQSYFLF+T
Sbjct: 124 NERVKFRDLLETAKDLDADCMATGHYIQRFVENG-----KAELHKAADQDRDQSYFLFST 178

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            Q+QL  LRFPLG +K K+  R+LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 179 KQEQLDYLRFPLGHLKSKKDTRELAHKYGLPVADKPDSQDICFVPNGSYAAVIEKLRPEA 238

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
           A  G IV  +G +LG H GIINYT+GQRRGLG+  G+PL+V+ LD +S  VIVGP+E+L 
Sbjct: 239 ANPGQIVSQDGAVLGEHKGIINYTVGQRRGLGIGGGDPLYVIKLDADSREVIVGPKEALA 298

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              + ++EINWLG+  F D+        V++RS++ P    ++  ++    V+   +E G
Sbjct: 299 TRTVLIKEINWLGEDNFLDS--KERTLAVRVRSTRSPKEAIIKPISETTATVELVMAEEG 356

Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384
           +A GQACVFY  D    R+ GGG I+
Sbjct: 357 IAPGQACVFY--DIEGTRIYGGGWIT 380


>gi|291166309|gb|EFE28355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Filifactor alocis ATCC 35896]
          Length = 371

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 191/387 (49%), Gaps = 26/387 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ MSGGVDSSV A LLK+ GY+V+G+ ++ ++ +      G C A QD  D  RV 
Sbjct: 3   KKVILGMSGGVDSSVSALLLKQQGYEVVGLFMKNWDEKDEG---GVCTATQDYEDVMRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  Y  ++E+ + + V   F + Y  G TP P V CN+ +KF+  L    +L AD 
Sbjct: 60  GQLEIPFYTVNFEKEYWDRVFSYFLNEYEHGRTPNPDVMCNQEIKFNAFLDYALKLEADY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A GHY       G     R  + R  D  +DQSYFL   T++ L    FP+ D++K  V
Sbjct: 120 IAMGHYAGVLKKNG-----RYYLRRGKDANKDQSYFLSRITEEALSKTIFPIADLEKSEV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+LA +  L  A K DS  +CF+ +  +   + +        G I+ ++G+ +G H G+I
Sbjct: 175 RELAEKYRLYTATKKDSTGVCFIGERNFDKFLDQFLK--TNPGLILTVDGKKIGEHTGLI 232

Query: 261 NYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
           +YTIGQR+     GV  GEP FV   D   + + V       SL    +   ++ W+   
Sbjct: 233 HYTIGQRKGIGIGGVGSGEPWFVAGKDLKKNILYVAQGEQHPSLYTTELLGEDVVWIT-- 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +     F+   K R  Q  +PV V +  D+GV V +++    +  GQ  VFY  +  
Sbjct: 291 ---EKPQFPFRGTAKFRYRQKDIPVTVYEHQDEGVRVVYDEPVRSITPGQFAVFYDGEI- 346

Query: 374 EARVLGGGIISGSKRSDAVEESLLSVI 400
               LG  II+  K  +   E L  V+
Sbjct: 347 ---CLGSAIITKGKPLNMKYEYLHDVV 370


>gi|322419745|ref|YP_004198968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
 gi|320126132|gb|ADW13692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
          Length = 356

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/367 (43%), Positives = 213/367 (58%), Gaps = 16/367 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77
           +  R+VVAMSGGVDSSV AALLK  G+DVIGV+LQLY   + +   G +CC+  DV DA 
Sbjct: 3   EKKRIVVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPEQTVSGGKTCCSLTDVMDAA 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + +   V D  ERFR  VI  F + YAAG TP PC  CN  +KF  LL +T    
Sbjct: 63  RVARRLGIPFQVIDLRERFRELVIDDFITEYAAGRTPNPCARCNERIKFGLLLELTASFD 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD+LATGHY R    +  DG     + + +D  +DQ+YFLF   QQQL    FP+G ++K
Sbjct: 123 ADLLATGHYAR----IEADGTGTYQLLKGLDPRKDQTYFLFGMNQQQLARTIFPVGRLEK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR+LA    L +A K +SQ+ICF+    Y   ++  +      G+IV  +G  LG H+
Sbjct: 179 HEVRELAARFNLPVAQKQESQEICFIPDNDYVRFLEE-HGVTPPAGEIVDSSGARLGTHD 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YT+GQRRGLG+A  EPL+V  ++ +++RV+VGPRE L+   +   E+ W       
Sbjct: 238 GIHRYTVGQRRGLGIAWKEPLYVTSIETDTARVVVGPREELQRTGLLAEELTWTD----- 292

Query: 318 DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +   F+    IR  Q PVP   + R D  + V+F+  + GV  GQA V Y +D    R
Sbjct: 293 SPITGTFRGSCSIRYRQKPVPCSALMREDGRLQVEFDAPQSGVTPGQAVVLYDAD----R 348

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 349 VVGGGWI 355


>gi|302381006|ref|ZP_07269467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311227|gb|EFK93247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 366

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 24/380 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++        G C A +D  DA
Sbjct: 2   DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V + I + +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L    +L
Sbjct: 59  VAVANEICIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R  +  GDDG +   + R +D  +DQ+YFL   TQ Q+ ++ FP+G+++
Sbjct: 119 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQ 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++A++  L  ADK DS  ICF+ +  + + +       A +G+IV ++G I+G+H
Sbjct: 174 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 231

Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312
           NG++ +TIGQRRGLG+   G   FV   +   + +IV   E    L  +++Y  +     
Sbjct: 232 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKLYASQF---- 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +        + F C  K R  Q  +   V+  DD  V V ++ +   V  GQA VFY  +
Sbjct: 288 ETSLNHLDRNEFDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDT-KAVTPGQAAVFYDGE 346

Query: 372 SNEARVLGGGIISGSKRSDA 391
                 +G  II      D 
Sbjct: 347 V----CIGSAIIDEVYNGDK 362


>gi|224826536|ref|ZP_03699637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lutiella nitroferrum 2002]
 gi|224601137|gb|EEG07319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lutiella nitroferrum 2002]
          Length = 358

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 183/373 (49%), Gaps = 28/373 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R+VV MSGGVDSSV A LLK+ G++VIGV +Q +      +    C   QD  DA  V
Sbjct: 4   KKRIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDE---YCSIKQDALDAMSV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +   V ++ + +++ V   F   Y+AG TP P V CN  +KF   L    +LGAD
Sbjct: 61  ADIVGIDMEVVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      ++   +  + + +D  +DQSYFL+   Q QL    FPLG+++K  
Sbjct: 121 CIATGHYARK-----EERDGKHYLLKAVDHTKDQSYFLYRLNQAQLSKAMFPLGEIRKTE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA + GL  A K DS  ICF+ +  + + ++R        GD+V   G+ +GRH G+
Sbjct: 176 VRQLAEQAGLPTAAKKDSTGICFIGERPFREFLQRYLP--TQPGDMVTPEGKTVGRHEGL 233

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YT+GQR+GL +       GEP FV   D   +R+IV        L  + + + +++W 
Sbjct: 234 MYYTLGQRKGLNIGGAKDGSGEPWFVAGKDIPGNRLIVVQGHDHPLLLKNTLEMGDLSWT 293

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
            D               K R         +    D    + F   +  V  GQ+ V Y  
Sbjct: 294 LDEAPLPG-----DYAAKNRYRMADAACSLSPVVDGEANLTFRDKQWAVTPGQSAVLYDG 348

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 349 DI----CLGGGII 357


>gi|322515062|ref|ZP_08068070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322118942|gb|EFX91119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 389

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 210/391 (53%), Gaps = 29/391 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L +  L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 14  THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 72  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129

Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L    + LGAD +ATGHY+R     GDD   +  +   +D  +DQSYFL+  + 
Sbjct: 130 IKFKAFLEYAAKDLGADYIATGHYVRR---SGDDNNAQ--LLCGLDANKDQSYFLYTLSH 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+GD+ K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 185 KQVGQSLFPVGDIGKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  ++G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ ++V     
Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353
              L    +   +++W+        + +  +C VK R  Q  +   +Q  +DD + V F+
Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENVRCTVKTRYRQTDIACEIQPMDDDTIRVIFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + ++ V  GQ+ VFY  +      LGGG+I 
Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385


>gi|317402803|gb|EFV83347.1| tRNA-specific 2-thiouridylase mnmA [Achromobacter xylosoxidans C54]
          Length = 372

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 178/383 (46%), Gaps = 28/383 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             + K  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ 
Sbjct: 3   QTSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLL 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L    
Sbjct: 60  DAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAM 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+ +ATGHY R R    + G  R  + + +D  +DQSYFL    Q QL    FPLG+
Sbjct: 120 ALGAEHIATGHYARVREVAAEGGGSRFELLKALDGSKDQSYFLHRLNQAQLSRTLFPLGE 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR +A E+GL  A K DS  ICF+ +  + + + R        G I+   GQ +G
Sbjct: 180 IHKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGPILTPEGQKVG 237

Query: 255 RHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVH 301
           RH G+  YT+GQR          R       E  +V   D   + + V        L   
Sbjct: 238 RHEGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSG 297

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVA 360
            +  ++++W+             +   K R  Q      +     +G  +DF + +  V 
Sbjct: 298 SLRAQDVSWVAGQAPAAG-----EYGAKTRYRQADAACRLGDATTEGFTLDFAEPQWAVT 352

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ+ V Y  D      LGGGII
Sbjct: 353 PGQSAVLYDGDI----CLGGGII 371


>gi|229586563|ref|YP_002845064.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia africae ESF-5]
 gi|259495837|sp|C3PN11|MNMA_RICAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|228021613|gb|ACP53321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia africae ESF-5]
          Length = 365

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 243/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K+
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNVVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y      ARV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKFGDDKMKVKFLCEEKAVAPGQACVIYAG----ARV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITREIR 365


>gi|218133009|ref|ZP_03461813.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991882|gb|EEC57886.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC
           43243]
          Length = 375

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 205/370 (55%), Gaps = 20/370 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79
           RVVV MSGGVDSSV A LLK  GYDVIGVT+Q++    +   +  G CC    V DARRV
Sbjct: 16  RVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQDEDSCSMEENGGCCGWSAVEDARRV 75

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV +++  FR  VI  F + Y  G TP PC+ CNR VK+  LL  + ++GAD
Sbjct: 76  AQQLDIPYYVMNFKNEFRENVIEYFVNEYKNGRTPNPCIACNRYVKWESLLKRSMEIGAD 135

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R ++   +   +DQ+Y L+  TQ+QL     P+G+  KE 
Sbjct: 136 YIATGHYARIEQLS----NGRYVVRNSVTAAKDQTYALYNLTQEQLRHTLMPIGEYDKEH 191

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-----LEGDIVHLNGQILG 254
           +R +A + GL +A+K DSQDICFV  G Y   +   +   +     + G+ V+L G+++G
Sbjct: 192 IRQIAAQRGLMVANKPDSQDICFVPDGDYAGFIMNSDYAQSCSKACVPGNFVNLAGEVIG 251

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH G ++YTIGQR+GLG+AMG P+FVV +   ++ V++G        R+    +N++   
Sbjct: 252 RHKGYLHYTIGQRKGLGLAMGHPVFVVDIRPETNEVVIGDNSDCFSDRLVADRLNFMAV- 310

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              D + +      +IR S       V+  +DD +   F++ +  V  GQA V Y     
Sbjct: 311 ---DRLTEPKHLMARIRYSHKGGECTVRMIDDDRIECVFDEPQRAVTKGQAVVLYED--- 364

Query: 374 EARVLGGGII 383
              V GGG I
Sbjct: 365 -GHVFGGGTI 373


>gi|83953541|ref|ZP_00962262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841486|gb|EAP80655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. NAS-14.1]
          Length = 380

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     LNSL   K P D RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG+CCAG D++DARRV +++   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++  G DG     +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GLDGAE---LHCAADANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV  +G +L +H+G+INYTIGQRRGLG+  + +PL+VV LD ++++V+VGP+  L
Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + ++EINWLGD          +   V++RS++ P    ++  +D    V+    E 
Sbjct: 296 ATRTVPVKEINWLGDTPL--MSQSEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  +S   R+ GGG I
Sbjct: 354 GISPGQACVFYDPES--TRIFGGGWI 377


>gi|291535108|emb|CBL08220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis M50/1]
          Length = 359

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 199/367 (54%), Gaps = 16/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78
            +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++        +  G CC    V DARR
Sbjct: 4   KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLSAVDDARR 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + + +YV ++++ F+  V+  F + Y  G TP PC+ CNR VK+  LL+ +  +GA
Sbjct: 64  VADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLNRSLAIGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R           R  +   +   +DQ+Y L+  TQ+QL     P+G   K+
Sbjct: 124 DYIATGHYARIEQLS----NGRYAIKNSVTAAKDQTYALYNLTQEQLSHTLMPVGAYHKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNGQILGRHN 257
            +R +A E+GL +A K DSQ+ICF+    Y   + R     +   G+ V  +G ++G+H 
Sbjct: 180 EIRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDGTVVGKHK 239

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YTIGQR+GLG+A G P+FV  +   ++ V++G    +  + +    IN++     +
Sbjct: 240 GITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINFMSIPDIQ 299

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D ++       KIR S       V R  +D ++ +F +    V  GQA V Y  +     
Sbjct: 300 DEML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYDGE----Y 351

Query: 377 VLGGGII 383
           V GGG I
Sbjct: 352 VAGGGTI 358


>gi|225388352|ref|ZP_03758076.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme
           DSM 15981]
 gi|225045595|gb|EEG55841.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
           +   VVV MSGGVDSSV A LLK+ GY VIGVT+Q++        + +G CC    V DA
Sbjct: 4   EKKTVVVGMSGGVDSSVAAYLLKQQGYRVIGVTMQIWQDEDGDVQEEQGGCCGLSAVDDA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   + + +YV ++++ FR  V+  FA  Y  G TP PC+ CNR VK+  LL  +  +
Sbjct: 64  RRVAMQLEIPYYVMNFKQEFREHVMDYFAGEYLEGRTPNPCIACNRYVKWESLLRRSIAI 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  + R +   +DQ+Y L+  TQ+QL     P+G   
Sbjct: 124 GADYIATGHYARIERL----ENGRFALRRSVTEAKDQTYALYNLTQEQLSRTLMPVGSYH 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A E+GL++A K DSQ+ICFV    Y   ++        EG+ V L+G +LGRH
Sbjct: 180 KDEIRRMAEEIGLNVAHKPDSQEICFVPDKDYASFIEDYTGKSCPEGNFVDLHGNVLGRH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI +YT+GQR+GL ++MG P+FVV +  +++ V++G  E +  + +   ++NW+     
Sbjct: 240 KGISHYTVGQRKGLNLSMGRPVFVVEIRPDTNEVVIGEGEDVFTNILRCSKLNWMAVDGL 299

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                   +   KIR S       + +  +D V   F++    V  GQA VFYT D    
Sbjct: 300 HG---GRLRVDAKIRYSHRGAACTIREIGEDLVECVFDEPVRAVTPGQAVVFYTGD---- 352

Query: 376 RVLGGGII 383
            V GGG I
Sbjct: 353 YVAGGGTI 360


>gi|194290687|ref|YP_002006594.1| tRNA-specific 2-thiouridylase mnma [Cupriavidus taiwanensis LMG
           19424]
 gi|229486340|sp|B3R6Q0|MNMA_CUPTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|193224522|emb|CAQ70533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 361

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 178/372 (47%), Gaps = 26/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD  D   V 
Sbjct: 6   KRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVVSVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ 
Sbjct: 63  DLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAET 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     +   R  + + +D  +DQSYFL    Q QL    FPLG++ K  V
Sbjct: 123 IATGHYARVRQ----NAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A E+GL  A K DS  ICF+ +  + D + R        G +    G+++G H G+ 
Sbjct: 179 REIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGLA 236

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+G+G+       G+  +V   D  ++ + V        L    +   +++W+ 
Sbjct: 237 FYTLGQRKGIGLGGSRDGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLNASDLSWVA 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
                           K R  Q      VQ  D D + + F + +  V  GQ+ V Y  D
Sbjct: 297 GEPPAAGAAMAA----KTRYRQSDAACTVQAVDADALSLGFAEPQWAVTPGQSAVLYDGD 352

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 353 I----CLGGGII 360


>gi|99081242|ref|YP_613396.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria sp. TM1040]
 gi|123077645|sp|Q1GGT2|MNMA_SILST RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|99037522|gb|ABF64134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. TM1040]
          Length = 381

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/386 (50%), Positives = 256/386 (66%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     +NSL   K+P + RVVVAMSGGVDSSVVAA L   GYDV+GVTLQLY+   A
Sbjct: 1   MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D++DARRV +     HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G+    +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GEHGPELHSAEDANRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +  K++ R++A + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIQKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G IVH +G++LG HNG+I+YTIGQRRGLG+  + EPL+VV LD +  +VIVGP+E L
Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDQKQVIVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              R+ +REINWLGD  F     D +   VK+RS++ P    ++  ++    V+   +E 
Sbjct: 296 ATRRVPVREINWLGDAPFTSR--DEWHLSVKVRSTRPPRDAIIRPISETEAEVELFSAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           G++ GQACVFY  D N +R+ GGG I
Sbjct: 354 GISPGQACVFY--DPNGSRIYGGGWI 377


>gi|315497620|ref|YP_004086424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Asticcacaulis excentricus CB 48]
 gi|315415632|gb|ADU12273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Asticcacaulis excentricus CB 48]
          Length = 402

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/371 (54%), Positives = 257/371 (69%), Gaps = 7/371 (1%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RVV AMSGGVDSSV AALL   GY+VIGVTLQLY+  +A K+ G+CCAGQD++DAR 
Sbjct: 33  QGARVVAAMSGGVDSSVAAALLHAAGYEVIGVTLQLYDHGQALKKTGACCAGQDIHDARV 92

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I ++HYV DYE RF+++VI  FA SY  GETP+PC+ CN+TVKF DLL V R LGA
Sbjct: 93  AAEKIGIAHYVLDYESRFKDSVIEEFADSYLRGETPVPCIRCNQTVKFRDLLDVARDLGA 152

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY+  R     D   R  + R +D  RDQSYFLFATT++QL  LRFPL D+ K 
Sbjct: 153 EAMATGHYVERR-----DTGNRAELRRAIDRNRDQSYFLFATTREQLDFLRFPLADIPKP 207

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VRD+AR+MGL++A K DSQDICFV +GKY  ++ R+       GDIVHL+G++LG+H G
Sbjct: 208 QVRDIARQMGLNVAAKPDSQDICFVPEGKYTTLIDRLRPQGREAGDIVHLDGRVLGKHQG 267

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLFE 317
           I  YTIGQRRGL +A+GEPLFV+ LD  + RVIVGPRE+L    + ++E NWLGD    E
Sbjct: 268 ITGYTIGQRRGLNIAVGEPLFVIKLDAETRRVIVGPREALNTAALVMKETNWLGDHETLE 327

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            A         ++RS++ PVP  +   +  V V F+ SE GVA GQACV Y   ++E RV
Sbjct: 328 SAAAAHLPVLARVRSTRPPVPARLNLREGQVEVVFDASEEGVAPGQACVLYDP-ADEDRV 386

Query: 378 LGGGIISGSKR 388
           LGGG I  ++ 
Sbjct: 387 LGGGFIERTRP 397


>gi|331002457|ref|ZP_08325975.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410273|gb|EGG89707.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 363

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 202/368 (54%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDV GVT+Q++ S       GS  CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV   I + +YV ++ + F++ VI  F + Y    TP PC+ CNR VK+  LL  +  L
Sbjct: 62  RRVARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMML 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R           R  +       +DQ+Y L+  TQ QL     P+GD +
Sbjct: 122 GADYIATGHYARIEKL----ENGRFALRMSKTSAKDQTYALYNLTQDQLSKTLMPVGDYE 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R++A++  L +A+K DSQ+ICFV    Y   V+         G+ V  +G+ILG+H
Sbjct: 178 KDEIREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPVGNFVTADGEILGKH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI++YTIGQR+GLG+A+G P+FV  +  +++ V++G  E +  + +    +N +    F
Sbjct: 238 KGILHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLNAMAVESF 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                DG +   KIR S       ++   +D + +DF+K    +  GQA V Y       
Sbjct: 298 ----FDGMRAVGKIRYSHKGEHCTIKVLGEDRIRIDFDKKVRAITPGQAVVLYD---ESG 350

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 351 LVLGGGTI 358


>gi|262368696|ref|ZP_06062025.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046]
 gi|262316374|gb|EEY97412.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046]
          Length = 377

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 200/379 (52%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2   QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  +  ++   + + V   F + YAAG TP P + CN+ +KF   L    QLGAD
Sbjct: 59  CDKLGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMQLGAD 118

Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +ATGHY R         G+    + R +D  +DQ+YFL A   +++    FP+G+++K 
Sbjct: 119 FIATGHYARRGETMTNSKGEEYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A +  L  A K DS  ICF+ + ++ D +K+     A  G IV  +G+ +G H+G
Sbjct: 179 EVRKIAEQYDLVTAKKKDSTGICFIGERRFNDFLKQYLP--AQAGKIVLDDGKEVGEHHG 236

Query: 259 IINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR G+G+           FV++ D  ++R+++G       ++   ++   I+W
Sbjct: 237 LMYYTLGQRGGIGIGGLKGVAEGAWFVLHKDIENNRLVIGQGHEHPLMQSTTLWSETIDW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVF 367
           +   +       GF+C  + R  QD     +        GV V+F++ +  V  GQ+ VF
Sbjct: 297 VAGEM--QIPETGFRCTSRTRYRQDDQDCVIFNDPTTPGGVRVEFDEPQRAVTPGQSVVF 354

Query: 368 YTSDSNEARVLGGGIISGS 386
           Y+ +      LGGG+I  +
Sbjct: 355 YSGEV----CLGGGVIHHT 369


>gi|145589976|ref|YP_001156573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|205816900|sp|A4SZU5|MNMA_POLSQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145048382|gb|ABP35009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 370

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 179/375 (47%), Gaps = 29/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A +LK  G++VIG+ ++ +      +    C A QD  D   V 
Sbjct: 15  KKVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDNDE---YCSARQDWLDVVSVA 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +     ++   +R  V   F   YAAG TP P V CN  +KF   L     LGAD 
Sbjct: 72  DMIGIDVEAVNFAAEYRERVFADFLCEYAAGRTPNPDVLCNAEIKFKAFLDHAMSLGADA 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R   G     R  + + +D  +DQSYFL   TQQQL  + FPLG++ K  V
Sbjct: 132 IATGHYARVRHEGG-----RVQLLKAVDASKDQSYFLHRLTQQQLSKVMFPLGEIPKTEV 186

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A ++GL  A K DS  ICF+ +  + + + R    +   G I    G+ +G H G+ 
Sbjct: 187 RKIAEQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRV--PGPIKTPEGKTVGEHMGLA 244

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +T+GQR+G+G+       G+  +V   D  ++ + V        L  +++   + +W+ 
Sbjct: 245 FFTLGQRKGIGLGGSQDGNGDAWYVARKDMANNTLYVAQGHEHPWLLANKLSAVDASWVS 304

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
               E           K R  Q           + +   + F +++  V  GQ+ V Y  
Sbjct: 305 GAAPEPG-----SYSAKTRYRQTDSACTYIADIDTNNFSLSFPEAQWAVTPGQSAVLYDG 359

Query: 371 DSNEARVLGGGIISG 385
           D      LGGGIIS 
Sbjct: 360 DI----CLGGGIIST 370


>gi|254429373|ref|ZP_05043080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax sp. DG881]
 gi|196195542|gb|EDX90501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax sp. DG881]
          Length = 364

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 187/382 (48%), Gaps = 28/382 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RV+V MSGGVDSSV AA L   GY V G+ ++ +N    +     C A +D+
Sbjct: 1   MRKAPKDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTD---YCTAREDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA +V   + +  +  ++ E++ + V   F + Y AG TP P + CN+ +KF   L   
Sbjct: 58  LDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY +           +  + R +D  +DQ+YFL A   Q+     FPLG
Sbjct: 118 ITLGADYIATGHYSQVSH------GDKAQLLRAVDTNKDQTYFLHAVDYQKFDRTLFPLG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR +A E G D   K DS  ICF+ + ++ D +++     A  G I   +G ++
Sbjct: 172 DLEKPEVRRIAEEKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGTIEDDHGNVI 229

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+ +G++ YT+GQR+GLG+         P +V   D + + +I         L    +  
Sbjct: 230 GKQDGLMYYTLGQRQGLGIGGLASASEAPWYVAGKDLDRNVLIAVQGTDHPLLYSRELTS 289

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             + W+      +A     +   K R  Q      V    +G V+V F++ +  V  GQ+
Sbjct: 290 APMQWVAL----EAPALPARLTAKTRYRQPDQACTVSDAGNGRVHVIFDQPQRAVTPGQS 345

Query: 365 CVFYTSDSNEARVLGGGIISGS 386
            VFY         LGG +I  +
Sbjct: 346 VVFYDG----PVCLGGAVIEET 363


>gi|312116059|ref|YP_004013655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221188|gb|ADP72556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 395

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 204/375 (54%), Positives = 257/375 (68%), Gaps = 5/375 (1%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +L L  +P   R+VVAMSGGVDSS+ AAL+KR GYD +G+TLQLY+  +A  RKG+CCAG
Sbjct: 23  ALGLTGSPSSHRIVVAMSGGVDSSLTAALVKRAGYDTVGITLQLYDHGEAMARKGACCAG 82

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           QD+ DAR V D + V HYV DYE+RFR +VI  FA SY AGETP+PCV CN+TVKF DLL
Sbjct: 83  QDIMDARGVADRLGVPHYVLDYEDRFRQSVIDDFADSYLAGETPVPCVRCNQTVKFRDLL 142

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              R+LGA  L TGHY+RS       G R   M +  D +RDQSYFLFATTQ QL  LRF
Sbjct: 143 GAARELGASALVTGHYVRSVP-----GPRGIEMHQAADPDRDQSYFLFATTQAQLDFLRF 197

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PLG M K   R++A  + L +A K DSQDICFV  G Y  +++++       G+IVH +G
Sbjct: 198 PLGGMTKTETREMAAALHLPVASKPDSQDICFVPSGDYASIIRKLRPESGEPGEIVHADG 257

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++LG+H GIIN+T+GQR+GLG+A GEPLFV+ ++ ++ RVIVGPRE L   R+ LR++NW
Sbjct: 258 RVLGQHPGIINFTVGQRKGLGIATGEPLFVIRIEPSARRVIVGPREMLRTARLSLRDVNW 317

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           +G G  ++AV  G   FVK+RS+Q P    +     GV VD    E GVA+GQACVFY  
Sbjct: 318 IGGGSLDEAVAGGRSLFVKVRSTQPPREARLFAERGGVGVDLAGGEFGVAAGQACVFYDR 377

Query: 371 DSNEARVLGGGIISG 385
               ARVLGGG I  
Sbjct: 378 AGGAARVLGGGFIER 392


>gi|77165505|ref|YP_344030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
 gi|76883819|gb|ABA58500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
          Length = 391

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 182/386 (47%), Gaps = 28/386 (7%)

Query: 11  SLDLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           S    +N  +  +VVV +SGGVDSSV A  L++ GY   G+ ++ +           C  
Sbjct: 17  SRRFPRNQMNKPKVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVDFADESE---CTV 73

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            QD  DA+ V   + +S +  ++   + + V   F   Y  G TP P + CNR +KF   
Sbjct: 74  AQDREDAQAVTSLLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTF 133

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L     LG  ++ATGHY R      D  + R  + +  D  +DQSYFL+   Q+QL    
Sbjct: 134 LDHALALGNTLIATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTL 188

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG+++K  VR +A +  L    K DS  ICF+ + ++ + + R     A  G++   +
Sbjct: 189 FPLGELEKPQVRRIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPD 246

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVH 301
            + +G+H+G++ YT+GQRRGLG+       G P FVV  +   + + V        L+  
Sbjct: 247 KEWIGQHDGLMYYTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQGRHHPWLKSL 306

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360
            +   +++W+            + C  KIR  Q      +    +G + V F   +    
Sbjct: 307 ILEANQLHWVAGH----PPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAAT 362

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQA VFY  D      LGGG I+ +
Sbjct: 363 PGQAIVFYQDD----ECLGGGTITTT 384


>gi|157828286|ref|YP_001494528.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|166235079|sp|A8GRJ5|MNMA_RICRS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822057|sp|B0BWZ7|MNMA_RICRO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157800767|gb|ABV76020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 365

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K 
Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y      ARV
Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITREIR 365


>gi|114569244|ref|YP_755924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maricaulis maris MCS10]
 gi|122316614|sp|Q0ARV1|MNMA_MARMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114339706|gb|ABI64986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maricaulis maris MCS10]
          Length = 405

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/374 (55%), Positives = 264/374 (70%), Gaps = 10/374 (2%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           + L L  NP D RVVVAMSGGVDSSV AALL   GYDV+GVTLQLY+   A  +KG+CCA
Sbjct: 25  DPLGLGGNPGDHRVVVAMSGGVDSSVTAALLHHLGYDVVGVTLQLYDHGAAMAKKGACCA 84

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           GQD+YDA+RV +     HYV DYE RFR AVI  FA +Y AG TP+PCV CN+TVKF+DL
Sbjct: 85  GQDIYDAKRVAEACGFRHYVLDYESRFREAVIEEFADTYLAGFTPIPCVRCNQTVKFADL 144

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L+  RQLGA  +ATGHYI+       DG     + R  D  +DQSYFLFATT  QL  LR
Sbjct: 145 LTTARQLGAVCMATGHYIQRV-----DGPNGAELRRAADAGKDQSYFLFATTHDQLDFLR 199

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG + K+  R+LA   GL +ADK DSQDICFV  G+Y D+V+++  G +  G+IVH++
Sbjct: 200 FPLGHLNKDQTRELAEAFGLIVADKPDSQDICFVPNGRYVDIVEKVRPGASRPGEIVHVD 259

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G++LG H G+I YT+GQRRGL +A+G+PL+VV LD   + V+VGPRE+LE+  I L++IN
Sbjct: 260 GRVLGTHEGVIRYTVGQRRGLKIAVGDPLYVVRLDAAKAEVVVGPREALEIDTIALKDIN 319

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           WLGD    +A +DG    VK+RS++ PVP  +  + D + V   + E GVA GQACVFY+
Sbjct: 320 WLGD----EAPLDGAPVRVKVRSTRPPVPAALSVDGDDIRVVLARGEEGVAPGQACVFYS 375

Query: 370 SDSNEARVLGGGII 383
           SD +E RVLGGG I
Sbjct: 376 SD-DEDRVLGGGWI 388


>gi|153953713|ref|YP_001394478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium kluyveri DSM 555]
 gi|219854333|ref|YP_002471455.1| hypothetical protein CKR_0990 [Clostridium kluyveri NBRC 12016]
 gi|205813712|sp|A5N749|MNMA_CLOK5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146346594|gb|EDK33130.1| TrmU [Clostridium kluyveri DSM 555]
 gi|219568057|dbj|BAH06041.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 356

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 202/367 (55%), Gaps = 15/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRV 79
            +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++         +  CC+   V DA+ V
Sbjct: 3   KKVVVGMSGGVDSSVAAHLLKEQGYEVIGVTMQVWQEDDYYEDMESGCCSLSAVEDAKMV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +N+ HYV +++E F+  VI  F   Y  G+TP PC+ CN+ +KF +LL     LGAD
Sbjct: 63  AYHLNIPHYVMNFKEAFKKNVIDYFIQEYMEGKTPNPCIACNKYIKFDELLKRAMDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY             R  + +  D  +DQ+Y L+  TQ QL     P G  KKE 
Sbjct: 123 YVATGHYATVEKIND-----RYTLRKSKDHNKDQTYALYNLTQFQLAHTLMPCGIYKKEE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++ARE+GL +  K DS++ICF+    +   +KRI      EG+ +   G +LG+H GI
Sbjct: 178 IREIAREIGLMVHSKRDSEEICFIPDNDHGAYIKRITKDKVKEGNFIDKEGNVLGKHKGI 237

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YT+GQR+GLG++ G P +V+ +   ++ V++G  E +    +  +++N+L      + 
Sbjct: 238 VYYTLGQRKGLGLSFGVPTYVIDIKPYTNEVVLGSEEDIFKTDLVAKDVNFL----PFEN 293

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR S  P    +   +++ + V F   +  +  GQ+ VFY  +     ++
Sbjct: 294 LTSPMKVEAKIRYSSKPAEATISCLDEERIKVKFTDRQRAITKGQSVVFYKDNI----LI 349

Query: 379 GGGIISG 385
           GGGII  
Sbjct: 350 GGGIIDS 356


>gi|254434432|ref|ZP_05047940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani AFC27]
 gi|205822273|sp|Q3J9J6|MNMA_NITOC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|207090765|gb|EDZ68036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani AFC27]
          Length = 367

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 178/376 (47%), Gaps = 27/376 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV +SGGVDSSV A  L++ GY   G+ ++ +           C   QD  DA+ V
Sbjct: 3   KPKVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVDFADESE---CTVAQDREDAQAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L     LG  
Sbjct: 60  TSLLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNT 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R      D  + R  + +  D  +DQSYFL+   Q+QL    FPLG+++K  
Sbjct: 120 LIATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQ 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A +  L    K DS  ICF+ + ++ + + R     A  G++   + + +G+H+G+
Sbjct: 175 VRRIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPDKEWIGQHDGL 232

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           + YT+GQRRGLG+       G P FVV  +   + + V        L+   +   +++W+
Sbjct: 233 MYYTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQGRHHPWLKSLILEANQLHWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                       + C  KIR  Q      +    +G + V F   +     GQA VFY  
Sbjct: 293 AGH----PPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAATPGQAIVFYQD 348

Query: 371 DSNEARVLGGGIISGS 386
           D      LGGG I+ +
Sbjct: 349 D----ECLGGGTITTT 360


>gi|83951896|ref|ZP_00960628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius nubinhibens ISM]
 gi|83836902|gb|EAP76199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius nubinhibens ISM]
          Length = 380

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/379 (50%), Positives = 254/379 (67%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL L K P + RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 6   PLNSLGLPKPPSETRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG D++DARRV + +   HYV DYE  F++AVI  FA SY AG TP+PC+ CN  VKF 
Sbjct: 66  CAGIDIHDARRVAEEMGFPHYVLDYENIFQDAVIDEFADSYLAGATPVPCIRCNERVKFK 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   R L AD +ATGHYI+ +      G+    +    D  RDQSYFLF+TT +QL  
Sbjct: 126 DLLQTARDLDADCMATGHYIQRK-----QGQNGPELHCATDANRDQSYFLFSTTPEQLEF 180

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K++ R+LA + GL +ADK DSQDICFV  G Y  V++++  G A  G+IV
Sbjct: 181 LRFPLGHLPSKDATRELAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGEIV 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           H +G++LG HNG+I+YTIGQRRGLG+  + +PL+VV LD +   V+VGP+E L    + +
Sbjct: 241 HADGRVLGTHNGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKHVVVGPKEMLSTRNVPV 300

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD  F+      ++  VK+RS++ P    ++  +     V+    E G++ GQA
Sbjct: 301 REINWLGDEPFDSRA--EWQVSVKVRSTRPPREAVIRPLSPTTAEVELLSPEDGISPGQA 358

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY  ++  +R+LGGG I
Sbjct: 359 CVFY--ETEGSRILGGGWI 375


>gi|302670955|ref|YP_003830915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Butyrivibrio proteoclasticus B316]
 gi|302395428|gb|ADL34333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Butyrivibrio proteoclasticus B316]
          Length = 373

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 144/376 (38%), Positives = 207/376 (55%), Gaps = 20/376 (5%)

Query: 16  KNPKDMRV-----VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCA 69
           K   + +V     ++AMSGGVDSSV AAL  + GY+ IG T++LY +        G+CC+
Sbjct: 7   KPVTETKVEKNTALIAMSGGVDSSVAAALTLKKGYNCIGCTMRLYENDMVGLDLLGTCCS 66

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D  DAR VCD + + + ++ YE  FR+ VI PF  SY  GETP PC+ CN+ +KF  L
Sbjct: 67  IEDTKDARSVCDKLGIDYNIYHYEAEFRDKVIEPFVCSYERGETPNPCIRCNKYLKFDSL 126

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               R+LG D + TGHY R      ++      + +  DL +DQSY L+  +++QL    
Sbjct: 127 YKRARELGCDYIVTGHYARI-----EERDGHFYLLKAKDLNKDQSYVLYDLSEEQLRHTL 181

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLG+  K  VR +A E G   + KS+SQDICFV  G Y  ++ R       +GD V  +
Sbjct: 182 FPLGEFTKPEVRAIAEENGFVTSHKSESQDICFVPDGDYAGMIHRYRGKDYPKGDFVDKD 241

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G +LG H+GIINYTIGQRRGLG+     L+V  LD  +++VI+     L    + +R+ +
Sbjct: 242 GNVLGTHDGIINYTIGQRRGLGIPADRRLYVTKLDVENNKVILADNIDLFKREMIIRDFH 301

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W+          + F+C  KIR      P  V    +    V F++++  + +GQ+ V Y
Sbjct: 302 WITGS----EPTNEFRCQAKIRYKHKEQPASVLPLGEKRARVVFDEAQRAITAGQSAVLY 357

Query: 369 TSDSNEARVLGGGIIS 384
             D     VLGGGII 
Sbjct: 358 DGDI----VLGGGIID 369


>gi|303241870|ref|ZP_07328364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetivibrio cellulolyticus CD2]
 gi|302590544|gb|EFL60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetivibrio cellulolyticus CD2]
          Length = 360

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 137/364 (37%), Positives = 212/364 (58%), Gaps = 14/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRVC 80
           V++ MSGGVDSSV AA+L   GYDVIGVT+Q++     +    +G CC+   V DAR V 
Sbjct: 6   VMIGMSGGVDSSVAAAVLLEKGYDVIGVTMQIWPETKEEVKLTEGGCCSLSAVDDARGVA 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++ + +YV +++E F   VI  F   Y  G+TP PC+ CNR VKF  LLS    +G D 
Sbjct: 66  NSLGIPYYVLNFKEVFEEKVINYFIDEYLKGKTPNPCIACNRHVKFESLLSKAVSMGLDY 125

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY    +   D+ ++R ++ + +  ++DQ+Y L+  TQ QL  +  P+G+  K+ V
Sbjct: 126 VATGHYA---IIEYDENRKRYLLKKSVTQQKDQTYALYNLTQDQLSKVLMPIGNYSKDVV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A E+GL +A K DSQ+ICFV    Y   ++       + G+ V   G ILGRH G+I
Sbjct: 183 RQKAAELGLCVASKPDSQEICFVDDNNYGRFIQENTDKKIVPGNFVDTKGNILGRHKGLI 242

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YT+GQR+GLG+A G+P++V+ LD  ++ VI+G    +   ++   ++N++      D +
Sbjct: 243 HYTVGQRKGLGIAFGKPMYVIGLDVKNNNVILGDNSEVFSDKLIADDLNFISI----DGL 298

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   KIR S       +   ++G V V+F+  +  +  GQ+ VFY  D     V+G
Sbjct: 299 YEPMRVKAKIRYSAKEGDATIIPIENGKVRVEFDTPQRAITPGQSVVFYEDDI----VVG 354

Query: 380 GGII 383
           GGII
Sbjct: 355 GGII 358


>gi|165932990|ref|YP_001649779.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str.
           Iowa]
 gi|165908077|gb|ABY72373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia rickettsii str. Iowa]
          Length = 370

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 12  KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 72  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  LRFPLG + K 
Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 186

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICF+  G Y  V+ +I    +  G I+H+NG  LG H+G
Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    +R++NWL D + ++
Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y      ARV
Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 359

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 360 LGGGWITREIR 370


>gi|304436306|ref|ZP_07396284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370711|gb|EFM24358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 361

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 150/368 (40%), Positives = 208/368 (56%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77
           +  RVVVAMSGGVDSSV AALL+  GY+V+GVT++L    + +   G SCC+   V DAR
Sbjct: 2   EKQRVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEARDADLDGRSCCSLSSVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D + + HYV D+ + F+  VI  F   YA G TP PC+ CNR +KF  LL  TR LG
Sbjct: 62  RVADILGIPHYVMDFTDPFQRLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLEKTRALG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY R      +DG     + + +D  +DQSY L+  TQ+ +  + FPLGD +K
Sbjct: 122 AQYIATGHYARITH--TEDGT--YHLRKGIDAAKDQSYVLYHLTQEMMDHVLFPLGDYRK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + +R +A + GL +A K++SQ+ICFV +  Y   ++         G I    G +LG H 
Sbjct: 178 DEIRRMAEDYGLPVAHKAESQEICFVPRDDYKSYLRTHAPQTMQTGAITDRTGHVLGTHE 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGLG+A   PL+V  LD + +RVIVG  + +  H +   +++W       
Sbjct: 238 GIAFYTIGQRRGLGIAAEHPLYVTALDASENRVIVGASDEIFAHALTASDLSWT----LS 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  +   KIR  +     +++   DG V V F + +  V  GQ+ VFY  D+    
Sbjct: 294 RPPHKPRRVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA---- 349

Query: 377 VLGGGIIS 384
           VLGGG I 
Sbjct: 350 VLGGGSID 357


>gi|325527989|gb|EGD05219.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia sp. TJI49]
          Length = 387

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 178/380 (46%), Gaps = 32/380 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTPDGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L   ++    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRQLVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDG---VYVDFEKSEVGVASGQA 364
           +      +   DGF C  K R  Q               G     + F+ ++  V  GQ+
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACAYGTATPGPAGEARFSLAFDDAQWAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  +      LGGGII 
Sbjct: 348 AVLYDGEI----CLGGGIIE 363


>gi|170732018|ref|YP_001763965.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia MC0-3]
 gi|205811368|sp|B1JVW3|MNMA_BURCC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169815260|gb|ACA89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia MC0-3]
          Length = 391

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 178/387 (45%), Gaps = 37/387 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       G+P FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359
           +      +   DGF C  K R  Q                     +    + F+ ++  V
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAV 347

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
             GQ+ V Y  +      LGGGII  +
Sbjct: 348 TPGQSAVLYDGEI----CLGGGIIESA 370


>gi|188588033|ref|YP_001920516.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251778087|ref|ZP_04821007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|205813690|sp|B2V3V9|MNMA_CLOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188498314|gb|ACD51450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|243082402|gb|EES48292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 361

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 128/351 (36%), Positives = 203/351 (57%), Gaps = 11/351 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78
             +V+V MSGGVDSSV A LLK  GY+VIG T+Q++   K   +R+G CC+   V DARR
Sbjct: 5   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD +++  YV ++ + F+  VI PF   Y  G TP PC++CN+ +KF +LL   + +G 
Sbjct: 65  VCDKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGV 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +      +    R ++ R  D  +DQ+Y L+  TQ QL     P G+  K+
Sbjct: 125 DYIATGHYAKI-----EKKDDRYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKD 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+E+GL + +K DS++ICF+    +   +     G    G+ V  +G +LG+H G
Sbjct: 180 RIREIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNVLGKHKG 239

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I+ YTIGQR+GLG+++G P+FV  ++  ++ V++G  E +    +   ++N++      D
Sbjct: 240 IVYYTIGQRKGLGLSVGRPVFVTDINPRTNEVVIGAEEDIFKTELIAGDLNFITF----D 295

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +    +   KIR S  P    +    DG V V F++ +  +  GQ+ VFY
Sbjct: 296 KLEKEIEVEAKIRYSAKPAKATIVPLKDGRVKVVFDEKQRAITKGQSVVFY 346


>gi|288958853|ref|YP_003449194.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azospirillum sp. B510]
 gi|288911161|dbj|BAI72650.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azospirillum sp. B510]
          Length = 391

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 200/397 (50%), Positives = 257/397 (64%), Gaps = 18/397 (4%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +NSL L K P+D RVVVAMSGGVDSSV AA+L+ +GYDV+G+TLQLY+   A ++ G+CC
Sbjct: 1   MNSLGLSKRPQDTRVVVAMSGGVDSSVTAAVLREEGYDVVGITLQLYDHGLALQKPGACC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+YDAR+V D I + HYV DYE RF   V+  FA SY  GETP+PCV CN+ VKF D
Sbjct: 61  AGQDIYDARQVADRIGIPHYVLDYEGRFSQDVMDDFADSYLRGETPIPCVRCNQRVKFRD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  R LGAD LATGHY+R        G R   + R +D  +DQSYFLFATT++QL  L
Sbjct: 121 LLNTARDLGADALATGHYVRRIA-----GPRGAELHRAVDPAKDQSYFLFATTREQLEFL 175

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA   GL++A K DSQDICFV  G Y +VV ++  G    GDIVH+
Sbjct: 176 RFPLGGLTKPETRALAGRHGLEVAAKPDSQDICFVPNGNYAEVVAKLRPGSVEPGDIVHV 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +G++LGRH G+++YT+GQR+GLG+        E L+VV L+    RV+VGPR  L    +
Sbjct: 236 DGRVLGRHKGVVHYTVGQRKGLGIGGIRGQEEEALYVVRLEPARRRVVVGPRRDLARSLV 295

Query: 304 YLREINWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
            +R++NWLG     D     G +  VK+RS+Q   P       DG   V+  + + G+A 
Sbjct: 296 MVRDVNWLGSDPAPDQADGAGLEVSVKLRSAQPAAPALWHAGPDGTARVELREPQHGIAP 355

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           GQACV Y  D    RVLGGG ISG+  +  V E + S
Sbjct: 356 GQACVVYQGD----RVLGGGWISGT--AGTVAEGVES 386


>gi|34498857|ref|NP_903072.1| tRNA-specific 2-thiouridylase MnmA [Chromobacterium violaceum ATCC
           12472]
 gi|81653627|sp|Q7MBE1|MNMA_CHRVO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|34104709|gb|AAQ61066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromobacterium violaceum ATCC 12472]
          Length = 384

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 185/373 (49%), Gaps = 28/373 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R+VV MSGGVDSSV A LLK+ G++VIGV +Q +      +    C   QD  DA  V
Sbjct: 30  KKRIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDE---YCSIKQDALDAMSV 86

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +   + ++ + +++ V   F   Y+AG TP P V CN  +KF   L    +LGAD
Sbjct: 87  ADIVGIDMEIVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGAD 146

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R     G        + + +D  +DQSYFL+   Q QL    FPLGD++K  
Sbjct: 147 CIATGHYARKLEQDGT-----HYLMKAVDHTKDQSYFLYRLQQHQLAKAIFPLGDIRKTE 201

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E GL  A K DS  ICF+ +  + + ++R        G +V  +G+++G H G+
Sbjct: 202 VRRLAEEAGLPTAAKKDSTGICFIGERPFREFLQRYLPTS--PGQMVTPDGKVVGEHIGL 259

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDK--NSSRVIVGP-RESLEVHRIYLREINWL 311
           + YT+GQR+GL +       GEP FV   D   N   V+ G     L    + + +++W 
Sbjct: 260 MYYTLGQRKGLTIGGSRDGNGEPWFVAGKDIPGNKLIVVQGHDHPLLLKPTLSMADLSWT 319

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                 DA   G +   K R         +    DG   + F++ +  V  GQ+ V Y  
Sbjct: 320 ----LPDAPAPG-EYSAKNRYRMADAACTLSPIVDGQASLTFQEKQWAVTPGQSAVLYHG 374

Query: 371 DSNEARVLGGGII 383
           D      LGGGII
Sbjct: 375 DI----CLGGGII 383


>gi|56475956|ref|YP_157545.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Aromatoleum aromaticum EbN1]
 gi|81598997|sp|Q5P7R7|MNMA_AZOSE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Aromatoleum aromaticum EbN1]
          Length = 374

 Score =  461 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 191/385 (49%), Gaps = 29/385 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + +P  M+VVV MSGGVDSSV A LLK+ G+DV G+ ++ +      +    C   QD+ 
Sbjct: 4   NTDPNGMKVVVGMSGGVDSSVTALLLKQQGFDVTGLFMKNWEDDDDDE---YCSTRQDLV 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   VCD I +   V ++   +++ V   F   Y AG TP P V CN  +KF   L    
Sbjct: 61  DVASVCDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDVLCNSEIKFRCFLDHAM 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGAD +ATGHY + R +  +DG+    + +  D  +DQSYFL+   Q QL    FPLG 
Sbjct: 121 ALGADRIATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGA 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           + K  VR +A E GL +A+K DS  ICF+ +  + + + R        G+I +L +G+++
Sbjct: 180 LYKRDVRRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--MRPGEIRNLDDGRVI 237

Query: 254 GRHNGIINYTIGQRRGL----------GVAMGEPLFVVYLDKNSSRV--IVGP-RESLEV 300
           G H G++ +TIGQR+GL          G    +  +V   D  ++ +  + G    +L  
Sbjct: 238 GEHQGLMYHTIGQRKGLHIGGIKGRQDGAGEHDAWYVAGKDVKANVLYAVQGHEHPALLK 297

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGV 359
            R+   +++W+         V       K R     +P  ++   D G  + F + +  +
Sbjct: 298 TRLSATDLHWIAGRDPHTHWV----YTAKPRYRTPDMPCEIEALVDGGAEIVFAEPQWAL 353

Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384
             GQ+ V Y         LGGG+I+
Sbjct: 354 TPGQSVVVY----ESKVCLGGGVIA 374


>gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas sp. AL212]
 gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas sp. AL212]
          Length = 359

 Score =  461 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 183/373 (49%), Gaps = 27/373 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V MSGGVDSSV A +LK+ GYDV+G+ ++ +      +    C + QD  DA  V
Sbjct: 3   KHRVIVGMSGGVDSSVAAYVLKQQGYDVVGLFMKNWEDDDTDE---YCSSRQDFIDAVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I++   + ++   ++  V   F + Y AG TP P V CN  +KF   L    +LGAD
Sbjct: 60  ADVIDIPIEIVNFSIEYKERVFSQFLAEYQAGRTPNPDVLCNAEIKFKAFLDHANKLGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R            + +  D  +DQSYFL+   Q QL    FP+G + K  
Sbjct: 120 YIATGHYARVR-----KAGGVFQLLKGEDGNKDQSYFLYRLNQAQLAKSLFPIGHLYKRE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +ARE+ L  + K DS  ICF+ +  + + + R        G+I   +G+++G H G+
Sbjct: 175 VRKIARELKLPNSSKKDSTGICFIGERPFREFLNRYLPHE--PGEIQTTDGKVIGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YTIGQR+GLG+        EP FV   D N + +IV        L    +   +++W+
Sbjct: 233 MYYTIGQRQGLGIGGIRNGGDEPWFVAAKDMNRNVLIVVQGHNHPDLFRPSLKAIDLSWI 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
            D          +    K R  Q   P  +   + +   V+F +++  +  GQ+ V Y  
Sbjct: 293 DD----KQPHCNWVYAAKTRYRQTDAPCTITNLSHESCEVEFAQNQWAITPGQSVVIY-- 346

Query: 371 DSNEARVLGGGII 383
                  LGGG+I
Sbjct: 347 --ESQVCLGGGVI 357


>gi|260438131|ref|ZP_05791947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio crossotus DSM 2876]
 gi|292809456|gb|EFF68661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio crossotus DSM 2876]
          Length = 357

 Score =  461 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 147/367 (40%), Positives = 200/367 (54%), Gaps = 14/367 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +VVV MSGGVDSSV A +LK  GYDVIGVT+Q++           G CC    V DAR
Sbjct: 2   KKKVVVGMSGGVDSSVAALILKEQGYDVIGVTMQIWQDEDYCDMSENGGCCGLSAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV +TI + +YV +++E F+  VI  F + Y  G TP PC+ CNR VK+  LL     +G
Sbjct: 62  RVAETIGIPYYVMNFKEEFKKTVIDYFVAEYLRGRTPNPCIACNRYVKWEALLHRCLGIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY             R  + +   L +DQSY L+  TQ++L    FP+  M+K
Sbjct: 122 ADYIATGHYGNIEKLP----NGRFAVTKSASLNKDQSYVLYNLTQEELSHTLFPISTMEK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR +A   GL +A K DSQDICF++ G Y   ++      +  GD V   G +LGRH 
Sbjct: 178 DEVRKIAERAGLPVAHKKDSQDICFIKDGDYASFIEEQTGVKSGPGDFVDSKGNVLGRHA 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YT+GQR+GLG+A GEP +V+ LD   ++V++G  + L    +   +IN++      
Sbjct: 238 GIIHYTVGQRKGLGIAFGEPRYVIRLDVPKNQVVLGTLDELMTKEVLFDDINYMSVSDIN 297

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + V    K   K+R S   VP  +    DGV    FE+       GQA VFY        
Sbjct: 298 EPV----KVTGKVRYSAKDVPCTLYPAKDGVMKAVFEEPVRAATPGQAAVFYKD---GCI 350

Query: 377 VLGGGII 383
           V GG II
Sbjct: 351 VCGGSII 357


>gi|188586399|ref|YP_001917944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205816905|sp|B2A5K1|MNMA_NATTJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|179351086|gb|ACB85356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 368

 Score =  461 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 16/370 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDAR 77
           RV+VAMSGGVDSSV A +LK  GY+VIG  ++++    +     +    CC+   V+DA+
Sbjct: 6   RVLVAMSGGVDSSVAALMLKEQGYEVIGAHMRIWYREEDEELYEQNVKGCCSLAAVHDAK 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV D I +  YV +++E F + V+  F   Y  G TP PC+ CNR +K+ + L     L 
Sbjct: 66  RVADKIGIPFYVLNFKEPFYDWVVKNFIDEYLQGRTPNPCIACNRFIKWEEFLKRAMALE 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY +    V D+ K R ++ R  D  +DQSY L   TQ+QL    FPLGD  K
Sbjct: 126 CDYIATGHYSK---IVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLARTLFPLGDYYK 182

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR++A +  L +ADK DSQ+ICFV    Y + ++ +       G I+   G  LG H 
Sbjct: 183 EDVRNIAEQNELGVADKPDSQEICFVPNNDYGEFLQSVVPEHINPGPILDAQGNKLGEHK 242

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGLG+++G P++V+ +D +++ +IVG +E L    +   EIN +      
Sbjct: 243 GIAFYTIGQRRGLGISLGRPVYVIDIDADNNALIVGDKEELYSDGLIAEEINLI----PY 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + + +      KIR +   V   +Q   +D + V F +    V  GQ   FY  D     
Sbjct: 299 EQIENSIDIECKIRYNSRNVSSTLQPYGNDQLLVKFNQPVEAVTPGQGVTFYQDD----L 354

Query: 377 VLGGGIISGS 386
           V+GGG I  +
Sbjct: 355 VIGGGTILKA 364


>gi|254246300|ref|ZP_04939621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia PC184]
 gi|124871076|gb|EAY62792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia PC184]
          Length = 447

 Score =  461 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 178/387 (45%), Gaps = 37/387 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 58  SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 114

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 115 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 174

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 175 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 229

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 230 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 287

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       G+P FV   D  S+ + V        L    +    ++W
Sbjct: 288 LAFYTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 347

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359
           +      +   DGF C  K R  Q                     +    + F+ ++  V
Sbjct: 348 VAG----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAV 403

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
             GQ+ V Y  +      LGGGII  +
Sbjct: 404 TPGQSAVLYDGEI----CLGGGIIESA 426


>gi|160892535|ref|ZP_02073325.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50]
 gi|156865576|gb|EDO59007.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50]
          Length = 362

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 201/372 (54%), Gaps = 15/372 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
              V V MSGGVDSSV A LLK  GY+VIGVT+Q++    A      G CC    V DAR
Sbjct: 3   KKTVCVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDEDADQISEHGGCCGLSAVDDAR 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + + +YV +++E FR  VI  F   Y  G TP PC+ CNR VK+  LL  +  +G
Sbjct: 63  RVAAQLEIPYYVMNFKEDFRKYVIDYFVDEYRNGRTPNPCIACNRYVKWESLLRRSLSIG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY R           R  +     +E+DQ+Y L+  TQ QL     P+G+  K
Sbjct: 123 GDYIATGHYARVEQLSS----GRYTLRVAKGIEKDQTYALYNLTQDQLSKTLMPVGEYNK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R +A ++G+ +A+K DSQDICFV  G Y   ++R     A+ G+ V +NG++LG H 
Sbjct: 179 TQIRQIAADIGIQVANKPDSQDICFVPDGDYAGYLEREEGLKAVPGNFVDMNGKVLGTHK 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQR+GLG+AMG P+FVV +   ++ V++G         +   + N++     E
Sbjct: 239 GIIHYTIGQRKGLGLAMGHPVFVVDIIPETNEVVIGENADTFSKELIADKTNFMSVERPE 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D    G +   KIR +    P  +   D D V V F++       GQA VFY  D     
Sbjct: 299 D----GMQVIGKIRYAHKGAPCRIYMLDADRVRVVFDEPVRAATKGQAVVFYEDD----H 350

Query: 377 VLGGGIISGSKR 388
           ++GGG I    R
Sbjct: 351 IVGGGTIKEIIR 362


>gi|261496469|ref|ZP_05992849.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307672|gb|EEY08995.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 405

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/392 (31%), Positives = 206/392 (52%), Gaps = 29/392 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L    L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 30  THFPKLTPEQLAENSK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 87

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 88  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKE 145

Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R      D       + R +D  +DQSYFL+A  +
Sbjct: 146 IKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD-----AKLLRGLDENKDQSYFLYALNK 200

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 201 KQIGQSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 258

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ +IV     
Sbjct: 259 GEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHD 318

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353
              L    +  +++ W+          +  +C VK R  Q  +   +Q  +D+ + V F+
Sbjct: 319 NSALLSSGLIAKQLTWVDMQPLR----ENLRCTVKTRYRQADIACEIQVLDDETIRVMFD 374

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + ++ V  GQ+ VFY  +      LGGGII  
Sbjct: 375 EPQIAVTPGQSAVFYLGEV----CLGGGIIES 402


>gi|261493287|ref|ZP_05989814.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311137|gb|EEY12313.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 406

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/392 (31%), Positives = 206/392 (52%), Gaps = 29/392 (7%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +   +L    L +N K  +V++ MSGGVDSSV A +L++ GY V G+ ++ +     +  
Sbjct: 31  THFPKLTPEQLAENSK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 88

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A  D+ DA+ V D + +  +  ++   + + V   F + Y AG TP P + CN+ 
Sbjct: 89  --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKE 146

Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +KF   L      LGAD +ATGHY+R      D       + R +D  +DQSYFL+A  +
Sbjct: 147 IKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD-----AKLLRGLDENKDQSYFLYALNK 201

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  
Sbjct: 202 KQIGQSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 259

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297
           G+I  + G+++GRH+G++ +T+GQR+GLG+        +P +VV  D  ++ +IV     
Sbjct: 260 GEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHD 319

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353
              L    +  +++ W+          +  +C VK R  Q  +   +Q  +D+ + V F+
Sbjct: 320 NSALLSSGLIAKQLTWVDMQPLR----ENLRCTVKTRYRQADIACEIQVLDDETIRVMFD 375

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + ++ V  GQ+ VFY  +      LGGGII  
Sbjct: 376 EPQIAVTPGQSAVFYLGEV----CLGGGIIES 403


>gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cardiobacterium hominis ATCC 15826]
          Length = 369

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 27/382 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P+  ++ V +SGGVDSSV A LL+  GYDV G+ ++ +     +   G C A +DV DA
Sbjct: 6   PPQGAKIAVGISGGVDSSVAALLLRDAGYDVFGIFMKNWEE---TYSSGYCSAEEDVEDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R VC+T+ +  +  ++   +   V   F + Y AG TP P + CNR +KF+++     +L
Sbjct: 63  RDVCETLGIPLHTVNFVAEYHERVFRHFLAEYGAGRTPNPDILCNREIKFAEMAHYAAEL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LATGHY R   + G        + + +D  +DQSYFL   T  QL    FPLG M 
Sbjct: 123 GADYLATGHYARRGTHHGA-----PALYKGVDGSKDQSYFLSQITPAQLDKALFPLGGMA 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A + GL   DK DS  ICF+ +  + D +          G ++   G  +G H
Sbjct: 178 KSDVRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLANYFEN--KPGKMITPQGVWVGEH 235

Query: 257 NGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRES--LEVHRIYLREIN 309
            G++ YTIGQR+     G+  A  EP +V+  +   + +IVG  E   L    +  R++ 
Sbjct: 236 IGLMYYTIGQRQGLGIGGIAGASEEPWYVLDKNPADNTLIVGQGEHPLLYHDTLTARQLA 295

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           WL      +A   G     K R  Q   P  +  + +D + V F++ +  +  GQ  V Y
Sbjct: 296 WLN-----EAPEAGRVYQAKTRYRQPDQPCRITWQGEDEITVQFDEPQRAITPGQYLVLY 350

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             +    R LGGG+I      D
Sbjct: 351 DGE----RCLGGGVIEARSNRD 368


>gi|126729666|ref|ZP_01745479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sagittula stellata E-37]
 gi|126709785|gb|EBA08838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sagittula stellata E-37]
          Length = 379

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 193/384 (50%), Positives = 254/384 (66%), Gaps = 12/384 (3%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           + +   LNSL L K P + RVVVAMSGGVDSSVVAA+LK +GYDV+GVTLQLY+   A  
Sbjct: 1   MPKDAPLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLKEEGYDVVGVTLQLYDHGAALA 60

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           +KG+CCAG D++DARRV + +   HYV DYE  F+ AVI  FA SY  G TP+PC+ CN 
Sbjct: 61  KKGACCAGIDIHDARRVAEDMGFPHYVLDYENIFQEAVIEEFADSYLGGATPVPCIRCNE 120

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            VKF DLL   + L AD +ATGHYI+ +      G R   +    D  RDQSYFLF+TT 
Sbjct: 121 RVKFKDLLETAKDLEADCMATGHYIQRKT-----GARGPELHSAADAARDQSYFLFSTTP 175

Query: 183 QQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           +QL  LRFPLG +  K + R+LA   GL +ADK DSQDICFV  G Y  V++++  G A 
Sbjct: 176 EQLDFLRFPLGHLPSKAATRELAARYGLAVADKPDSQDICFVPDGNYAKVIEKLRPGAAE 235

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            G+IVH++G++LG+H G+I+YTIGQRRGLG+  + EPL+VV LD  + +V+VGP++ L  
Sbjct: 236 PGEIVHIDGRVLGQHRGVIHYTIGQRRGLGIGGLSEPLYVVRLDVETRQVVVGPKDLLAT 295

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359
             I +REINWLGD  F       ++  VK+RS++ P    ++   +    V+   +E GV
Sbjct: 296 RTIPVREINWLGDAPFTSQA--EWQLDVKVRSTRPPREAIIRPLSETTGEVELVVAEEGV 353

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           + GQACVFY  D   +R+ GGG I
Sbjct: 354 SPGQACVFYAPD--NSRIFGGGWI 375


>gi|149915230|ref|ZP_01903758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. AzwK-3b]
 gi|149810951|gb|EDM70790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. AzwK-3b]
          Length = 379

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/381 (51%), Positives = 254/381 (66%), Gaps = 12/381 (3%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
            + LNSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG
Sbjct: 4   ESGLNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +CCAG D++DARRV + +   HYV DYE  FR+AVI  FA SY AG TP+PC+ CN  VK
Sbjct: 64  ACCAGIDIHDARRVAEDMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F DLL   R L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT +QL
Sbjct: 124 FKDLLETARDLDADCMATGHYIQRKM-----GAHGPELHCAADAARDQSYFLFSTTPEQL 178

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
             LRFPLG +  K + R+LA   GL +ADK DSQDICFV  G Y  V++++  G A  G+
Sbjct: 179 DFLRFPLGHLPSKHATRELAARYGLKVADKPDSQDICFVPDGNYAAVIEKLRPGAAEPGE 238

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           I H++G+ILG H G+I+YTIGQRRGLG+  + EPL+VV LD ++ RVIVGP+E L    +
Sbjct: 239 IAHVDGRILGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDAQRVIVGPKELLATRLV 298

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362
            +REINWLGD  F+      +   VK+RS++ P    ++   D G  V+    E GV+ G
Sbjct: 299 PVREINWLGDAPFDSRP--EWHLSVKLRSTRPPQEAILRPLPDGGAEVELLSPEEGVSPG 356

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QACVFY  ++ ++R+LGGG I
Sbjct: 357 QACVFY--ETGDSRILGGGWI 375


>gi|300855514|ref|YP_003780498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium ljungdahlii DSM 13528]
 gi|300435629|gb|ADK15396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium ljungdahlii DSM 13528]
          Length = 358

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 213/368 (57%), Gaps = 15/368 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78
           + +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++   K  +  +G CC+   V DAR 
Sbjct: 2   NKKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQVWQDDKYYEGMEGGCCSLSAVDDARL 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + +YV ++   F+  VI  F   Y  G TP PCV CN+ +KF +LL     LGA
Sbjct: 62  VAYNLGIPYYVMNFRNEFKKCVIDYFIDEYTKGRTPNPCVACNKYIKFDELLKRAMDLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY             R ++ +  D ++DQ+Y L+  TQ QL     P G  KKE
Sbjct: 122 DYVATGHYATVEKVND-----RYVLKKSKDSKKDQTYALYNLTQFQLEHTLMPCGIYKKE 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R++A+++GL + +K DS++ICF+    +   +KR+      EG+ V  +G++LG+H G
Sbjct: 177 QIREIAKKIGLAVHNKKDSEEICFIPDNDHGSYIKRVAPNKVKEGNFVDKSGKVLGKHGG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I  YTIGQR+GLG+A G P++V+ ++   + V++G  + +  +++  +++N++      +
Sbjct: 237 ITYYTIGQRKGLGIAFGIPMYVIDINPLKNEVVLGGEKDIFKNKLIAKDLNFM----PFE 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +   KIR S  P    +   ++D V V+F++++  +  GQ+ VFY  D     +
Sbjct: 293 KLDKPMRIQAKIRYSAKPADALISAIDEDRVKVEFDENQRAITKGQSVVFYDGDI----L 348

Query: 378 LGGGIISG 385
           +GGG+I  
Sbjct: 349 VGGGVIDS 356


>gi|91790389|ref|YP_551341.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas sp. JS666]
 gi|91699614|gb|ABE46443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaromonas sp. JS666]
          Length = 421

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/410 (30%), Positives = 192/410 (46%), Gaps = 42/410 (10%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           V   ++R N   +DK     R+VV +SGGVDS+V A LLK+ G++VIG+ ++ +     S
Sbjct: 9   VGIASSRDNRTPMDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDS 68

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           +    C +  D  DA  V D I +     ++   +++ V   F   Y AG TP P + CN
Sbjct: 69  E---YCSSNIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCN 125

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             +KF   L    +LGA+ +ATGHY R R    ++      + + +D  +DQSYFL    
Sbjct: 126 AEIKFKAFLDHAMRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLN 182

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q QL    FP+G++ K  VR +A E+GL  A K DS  ICF+ +  + D + R  A    
Sbjct: 183 QAQLSKTLFPVGELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIAKA-- 240

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM---------------------GEPLFV 280
            G I +  G++LG+H G+  YT+GQR+GLG+                        EP FV
Sbjct: 241 PGPIKNDRGRVLGKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFV 300

Query: 281 VYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337
              D +++ + V        L+   +  ++ +W+        ++       K R  Q   
Sbjct: 301 ARKDLDTNTLWVVQGHDHPWLQSTVLSAQDCSWVAGTAPAAGLMA-----AKTRYRQVDA 355

Query: 338 PVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
              ++        + F + +  V  GQ+ V Y  D      LGGG+I+ S
Sbjct: 356 TCELRSATTANCELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 401


>gi|239947878|ref|ZP_04699631.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922154|gb|EER22178.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 370

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 183/371 (49%), Positives = 240/371 (64%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 12  KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV  YE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGA
Sbjct: 72  VANKLGIPHYVLGYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG + K+
Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 186

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++ADK DSQDICFV  G Y  V+ +I  G +  G IVH+NG  LG H+G
Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSG 246

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  +PL+VV +D   + V VGP  +L V    ++++NWL D   E 
Sbjct: 247 IINYTIGQRRGLGIAYNKPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ET 303

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              +  +  VKIRS++ P    + +  DD + + F   E  VA GQACV Y  +    RV
Sbjct: 304 KDNEKLEVAVKIRSTRPPRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RV 359

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 360 LGGGWITRDMR 370


>gi|300113744|ref|YP_003760319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus watsonii C-113]
 gi|299539681|gb|ADJ27998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus watsonii C-113]
          Length = 391

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 180/376 (47%), Gaps = 27/376 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV +SGGVDSSV A  L++ GY + G+ ++ +           C   QD  DA+ V
Sbjct: 27  KPKVVVGLSGGVDSSVAALRLQQQGYPISGLFMKNWVDFADESE---CTVAQDKKDAQAV 83

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +S +  ++   + + V   F   Y  G TP P + CNR +KF   L     LG  
Sbjct: 84  TSLLGISFHEANFAIEYWDRVFRYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNT 143

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R      D  + R  + +  D  +DQSYFL+   Q+QL    FPLG+++K  
Sbjct: 144 LIATGHYARI-----DQQEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQ 198

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A +  L    K DS  ICF+ + ++ + + R     A  G++   N + +G+H+G+
Sbjct: 199 VRRIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMCTPNKERIGQHDGL 256

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + YT+GQRRGLG+       G P FVV  +   + + V        L    +   +++W+
Sbjct: 257 MYYTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNILYVAQGRDHPWLRSLALEANQLHWV 316

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                       + C  KIR  Q      +    +G + V F+  +     GQA VFY +
Sbjct: 317 AGY----PPSLPYSCTAKIRYRQADQHCTLTAITNGYIKVIFDVPQYAATPGQAIVFYQN 372

Query: 371 DSNEARVLGGGIISGS 386
           D      LGGG I+ +
Sbjct: 373 D----ECLGGGTITTT 384


>gi|221233878|ref|YP_002516314.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter crescentus NA1000]
 gi|220963050|gb|ACL94406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus NA1000]
          Length = 410

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/379 (53%), Positives = 260/379 (68%), Gaps = 4/379 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A  RKG+CCAGQD+ DAR
Sbjct: 35  PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 95  MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++  +    +G  R  + R  D  +DQSYFLFATT++QL  LRFPLG M K
Sbjct: 155 AEAMATGHYVQRAMPG--NGGNRPELRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 212

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A  +GL IADK DSQDICFV +GKY  V+ RI    A  GD+VHL+G++LGRH 
Sbjct: 213 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 272

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G+  YTIGQRRGL +A+G+PLFVV ++ +  +VIVGPRE+L    + L+E +WLG     
Sbjct: 273 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 332

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E A  DG +   ++RS+++PVP  +   D  + V F+ +E GVA GQACV Y   ++  R
Sbjct: 333 EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPDR 391

Query: 377 VLGGGIISGSKRSDAVEES 395
           VLGGG I+G+ R   +  +
Sbjct: 392 VLGGGFIAGTTRQMDLNAA 410


>gi|298369001|ref|ZP_06980319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283004|gb|EFI24491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 367

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++++  P++  ++V +SGGVDSSV AALLK+ G+ V GV +Q +      +    C   Q
Sbjct: 1   MNIENTPQN--IIVGLSGGVDSSVTAALLKQQGHRVHGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADILGIDIDIVNFAAQYKDKVFAYFLKEYGAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YALEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLQPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   +   + +IV        L    + + +
Sbjct: 229 AVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAGKNLAKNELIVVQGHDHPLLYTRSLVMND 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +++      ++      +   K R      P  ++  +DD   + F++ +  V  GQ+ V
Sbjct: 289 LSFTLPERPKEG-----RYTCKTRYRMADAPCGLRYLDDDTAELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGG+I  + + 
Sbjct: 344 LYDGDV----CLGGGVIMATDKP 362


>gi|120613352|ref|YP_973030.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax citrulli AAC00-1]
 gi|166991120|sp|A1TWB8|MNMA_ACIAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120591816|gb|ABM35256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax citrulli AAC00-1]
          Length = 378

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/396 (30%), Positives = 187/396 (47%), Gaps = 34/396 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D 
Sbjct: 1   MTASPKQ-RIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L   
Sbjct: 57  VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++GA+ +ATGHY R R            + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 117 MRVGAEKIATGHYARVRHNPA---TGLHELLKGLDPAKDQSYFLHRLNQSQLSRTLFPVG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR +A E+GL  A K DS  ICF+ +  + + + R        G I+   G+ L
Sbjct: 174 ELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYIQHA--PGPILDDRGRRL 231

Query: 254 GRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESL 298
           G+H G+  YT+GQR+GLG+                P FV   +   +  RV+ G     L
Sbjct: 232 GQHVGLSFYTLGQRQGLGIGGVKDKGAQRGGGEHAPWFVARKEVERNVLRVVQGHDHPWL 291

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV 357
             H +   + NW+              C  K R  Q      V + + G   + F +++ 
Sbjct: 292 LSHTLQATDANWVAGRPPAAGA-----CAAKTRYRQQDAACTVTQAEGGDFALSFPEAQW 346

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            V  GQ+ V Y  +      LGGG+I+ +   ++  
Sbjct: 347 AVTPGQSAVLYDGEV----CLGGGVITAAGPVNSAA 378


>gi|300310029|ref|YP_003774121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herbaspirillum seropedicae SmR1]
 gi|300072814|gb|ADJ62213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 177/379 (46%), Gaps = 31/379 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVV+ MSGGVDSSV A LLK  GY+VIG+ ++ +     S+    C   +D  DA  
Sbjct: 2   SKKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---YCSTREDWIDAVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + V     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA
Sbjct: 59  VADVVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY R R     D      + + +D  +DQSYFL    Q+QL    FPLG++ K 
Sbjct: 119 DLIATGHYARVRQGPQGD----FQLLKALDASKDQSYFLHRLNQEQLSRTVFPLGEIHKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++ L  A K DS  ICF+ +  + + + R  +     G I   +GQ +G H G
Sbjct: 175 EVRRIAEQLQLPNAKKKDSTGICFIGERPFREFLNRYLSY--KPGPIKTADGQTVGEHVG 232

Query: 259 IINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +  YT+GQR+G+G+            G+  +V   D  ++ + +        L    +  
Sbjct: 233 LSFYTLGQRKGIGIGGLKAHQNADGHGDAWYVARKDVENNTLYIVQGHDHPWLLSPTLSA 292

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
            +++W+     + A         K R  Q  VP           + F+  +  V  GQ+ 
Sbjct: 293 GQVSWVAGHAPQMAA-----LSAKTRYRQADVPCGFSDAGASFSLAFDTPQWAVTPGQSA 347

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  D      LGGGII 
Sbjct: 348 VLYDGDV----CLGGGIIE 362


>gi|304321619|ref|YP_003855262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvularcula bermudensis HTCC2503]
 gi|303300521|gb|ADM10120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvularcula bermudensis HTCC2503]
          Length = 409

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 199/392 (50%), Positives = 259/392 (66%), Gaps = 14/392 (3%)

Query: 1   MVVSEATRLNSLDLD-KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           M+ +  T L +  LD   PK  R+VVAMSGGVDSSV AAL+ R GYDV+G+TLQLY+   
Sbjct: 4   MIKTPLTDLTASQLDLGLPKGARIVVAMSGGVDSSVTAALVHRAGYDVVGITLQLYDHGV 63

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A  +KG+CCAGQD+ DAR V D + + HYV DYE+RF ++V+  FA +Y AG TP+PCV 
Sbjct: 64  AIAKKGACCAGQDIADARAVADRLGIPHYVLDYEDRFGDSVMQDFADTYLAGATPIPCVR 123

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CN+ VKF DLL   R LGA  +ATGHYIR       D  R   + R  D  +DQSYFLFA
Sbjct: 124 CNQRVKFRDLLHTARDLGAAAMATGHYIRR-----TDDDRGLALRRAEDAGKDQSYFLFA 178

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           TT++QL  LRFPLGD+ KE+ R +A E+GL +ADK DSQDICFV +G+Y  VV+R+  G 
Sbjct: 179 TTREQLSFLRFPLGDLPKETTRQIAAELGLGVADKPDSQDICFVPEGRYASVVERLRPGA 238

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G IV LNGQ+LG+H GII+YT+GQRRGL    + EPL+V+ LD + + V+VGP+ +L
Sbjct: 239 ATPGAIVDLNGQVLGQHQGIIHYTVGQRRGLALGGLVEPLYVIRLDADRAEVVVGPKAAL 298

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358
            V  I L E+NWLG            +  VK+RS++ PV   ++R+     V F++ + G
Sbjct: 299 GVRAIRLDEMNWLG-----TEEAATHRVAVKVRSTKPPVLAVLKRSGAEAEVMFDEPQEG 353

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
           VA GQA VFY     + +VLGGG I  +   D
Sbjct: 354 VAPGQAGVFYA--LKDDQVLGGGWIRSTVPVD 383


>gi|225026476|ref|ZP_03715668.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353]
 gi|224956215|gb|EEG37424.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353]
          Length = 354

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 17/365 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRV 79
            + ++AMSGGVDSSV A L+K  GYD IGVT++LY++      R+ +CC+  D+ DAR V
Sbjct: 3   KKALIAMSGGVDSSVAAYLMKEAGYDCIGVTMKLYDNEDIGMAREKTCCSLSDIEDARSV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  + + +YVF++++ F+  VI  F S Y  G TP PC++CNR +KF  L    + L  D
Sbjct: 63  CVKLGIPYYVFNFKDDFKEKVIDNFISCYQNGMTPNPCIECNRHLKFEHLYKRAKVLHCD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TGHY +         ++   + + +D  +DQSY L++ TQ+QL +  FPLGD  K  
Sbjct: 123 VIVTGHYAKITHD-----EQGYHLLKGVDDSKDQSYVLYSLTQEQLANTCFPLGDYSKTE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R +A E G   A K DSQDICF+  G Y   +++     +  GD V+  G+++GRH G 
Sbjct: 178 IRKIAEEQGFFNAHKHDSQDICFIPDGDYMSFIEKTTGKKSEPGDFVNQEGEVVGRHKGY 237

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG++  +P +V  +    ++VIVG  E L    +   + NW+      + 
Sbjct: 238 YGYTIGQRKGLGISAPKPYYVTEIRPEENKVIVGSNEDLFKTDLIANDFNWI------EN 291

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +      +IR  Q       ++N DG V + F + +  +  GQA V Y  +     V+
Sbjct: 292 LAEDEVAKARIRYHQTEKEATARKNSDGTVDIHFLEPQRAITKGQAVVLYRDN----HVV 347

Query: 379 GGGII 383
           GGG I
Sbjct: 348 GGGTI 352


>gi|295690747|ref|YP_003594440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter segnis ATCC 21756]
 gi|295432650|gb|ADG11822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter segnis ATCC 21756]
          Length = 409

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 203/378 (53%), Positives = 255/378 (67%), Gaps = 5/378 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A  RKG+CCAGQD+ DAR
Sbjct: 35  PEGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 95  MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++  +     G  R  + R  D  +DQSYFLFATT++QL  LRFPLG M K
Sbjct: 155 AEAMATGHYVQRGMPA---GTNRPQLRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 211

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A  +GL IADK DSQDICFV +GKY  V+ RI    A  GDIVHL+G++LGRH 
Sbjct: 212 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDIVHLDGRVLGRHE 271

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           G+  YTIGQRRGL VA+G+PLFVV +D +  +VIVGPRE+L    + L+E NWLG     
Sbjct: 272 GVTRYTIGQRRGLNVAVGDPLFVVRIDADKRQVIVGPREALLTAALTLKETNWLGGQDDL 331

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             A  +G     ++RS+++PV   +   D  V V F+ SE GVA GQACV Y   ++  R
Sbjct: 332 AAAADEGQPVLARVRSTREPVAGRLSLLDGEVAVTFDGSEEGVAPGQACVLYDP-ADPER 390

Query: 377 VLGGGIISGSKRSDAVEE 394
           VLGGG I+ + R+  +  
Sbjct: 391 VLGGGFIARAVRAMDLAP 408


>gi|30248966|ref|NP_841036.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Nitrosomonas europaea ATCC 19718]
 gi|81584700|sp|Q82VV0|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Nitrosomonas europaea ATCC 19718]
          Length = 362

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 180/374 (48%), Gaps = 27/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GYDV G+ ++ +      +    C + QD  DA  V D
Sbjct: 5   RVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNWEEDDTDE---YCSSRQDFLDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++   V ++   +R  V   F   Y AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  ILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDHALNLGADWI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +       +      + +  D  +DQSYFL+   QQQL    FP+G + K  VR
Sbjct: 122 ATGHYAQVH-----ETDGLFQLLKGEDGNKDQSYFLYRLNQQQLSHTIFPIGHLYKREVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +ARE  L  + K DS  ICF+ +  + + + R     A  G+I  L+ Q++G H G++ 
Sbjct: 177 KIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLP--ANPGEIHTLDDQVVGEHLGVMY 234

Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+        +P FV   D   + + V       +L    +   +++W+  
Sbjct: 235 YTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAADLSWISG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
                  V       KIR  Q   P  +   + D   + F   + G+  GQ+ V Y    
Sbjct: 295 TPPHQNWV----YAAKIRYRQTDAPCAITHFEHDSCQIGFAAPQWGITPGQSVVVY---- 346

Query: 373 NEARVLGGGIISGS 386
                LGGG+I GS
Sbjct: 347 ESKVCLGGGVIIGS 360


>gi|304387037|ref|ZP_07369292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338909|gb|EFM05008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 367

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQSTDKP 362


>gi|167571198|ref|ZP_02364072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia oklahomensis C6786]
          Length = 400

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 178/416 (42%), Gaps = 58/416 (13%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGARTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVREIAEQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D  S+ + V        L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV------------------------------FVQRNDDGV 348
              DG +C  K R  Q                                       + +  
Sbjct: 287 PPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAADASGERF 346

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402
            + F++ +  V  GQ+ V Y  D      LGGGII    + R DA        + +
Sbjct: 347 SLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAHAGGAPALAE 398


>gi|226940740|ref|YP_002795814.1| tRNA-specific 2-thiouridylase MnmA [Laribacter hongkongensis HLHK9]
 gi|226715667|gb|ACO74805.1| TrmU [Laribacter hongkongensis HLHK9]
          Length = 359

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 180/374 (48%), Gaps = 28/374 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  R+VV +SGGVDSSV A LLK+ G++VIGV +Q +     S+    C   QD  DA  
Sbjct: 4   KKKRIVVGLSGGVDSSVTAYLLKQQGHEVIGVFMQNWEDDNDSE---YCSIKQDSLDAMS 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +   + ++   ++  V   F   Y+AG TP P V CN  +KF   L    QLGA
Sbjct: 61  VADLLGIDMEIVNFAREYKERVFQYFLDEYSAGRTPNPDVLCNAEIKFKAFLDYAMQLGA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R     G     R  + + +D  +DQSYFL+     QL    FPLGD+ K 
Sbjct: 121 DCIATGHYARKLERDG-----RHYLLKGVDPGKDQSYFLYRLVPAQLEKALFPLGDLHKT 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A E+GL  A K DS  ICF+ +  +   ++R        G +V   G+++G+H G
Sbjct: 176 EVRRIAGEIGLPNARKKDSTGICFIGERPFRAFLQRYLP--MHPGAMVTPEGRVVGQHEG 233

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR+GL +       GEP FV   D   + +IV        L    +   +++W
Sbjct: 234 LMYYTLGQRKGLNIGGSKDGNGEPWFVAGKDIPRNELIVVQGHDHPLLLKPVLEAEQLSW 293

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
                 +D          K R         +   +   + + F  S+  V  GQ+ V Y 
Sbjct: 294 TLGAAPDDGA-----YAAKNRYRMPDAACELTNLSSGRIRLAFADSQWSVTPGQSAVLYD 348

Query: 370 SDSNEARVLGGGII 383
            D      LGGG+I
Sbjct: 349 GDV----CLGGGVI 358


>gi|315925181|ref|ZP_07921397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621552|gb|EFV01517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 367

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 186/372 (50%), Gaps = 24/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+VV MSGGVDSSV A  LKR G+DVIG+ ++ ++    +   G C A +D  D +RV 
Sbjct: 1   MRIVVGMSGGVDSSVAALQLKRAGHDVIGIFMKNWDE---TDENGVCTATEDYEDVKRVS 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
           + + + +Y  ++E+ +++ V   F + Y  G TP P V CN+ +KF   +    ++ GAD
Sbjct: 58  EALAIPYYTVNFEKEYQDRVFAYFLAEYKRGRTPNPDVLCNKEIKFKAFMDYAMKVAGAD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R      D       M + +D  +DQ+YFL    Q QL    FP+GD+ K  
Sbjct: 118 KLATGHYARIDR---DPASGVFRMLKGIDTGKDQTYFLCQLGQAQLEKTLFPIGDLPKSE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA    L  A K DS  ICF+ +  +   + R     A  G I  L+G + GRHNG+
Sbjct: 175 VRRLAEAHHLITAGKKDSTGICFIGERNFRQFLSRYLP--AKPGLIKDLSGNVKGRHNGL 232

Query: 260 INYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           + YT+GQRR     G   GEP FVV  D + + + V       +L    +    +NW+  
Sbjct: 233 MYYTLGQRRGLGIGGQGTGEPWFVVRKDLSENVLYVVQGAGHPALYSTSLRASAMNWIAG 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +     F C  K R  Q    V V  R+D  + VDFEK +  V  GQ  V Y  + 
Sbjct: 293 ----ETPAASFGCTAKFRYRQPDQAVRVTPRSDTTIAVDFEKLQRAVTPGQEVVLYDGEI 348

Query: 373 NEARVLGGGIIS 384
                LGG  I 
Sbjct: 349 ----CLGGATID 356


>gi|325290391|ref|YP_004266572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965792|gb|ADY56571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 352

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 145/363 (39%), Positives = 201/363 (55%), Gaps = 15/363 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V VAMSGGVDSSV A LLKR+GYDV+GVT+Q++   +   ++ +CC+   V DARRV  
Sbjct: 3   KVFVAMSGGVDSSVAALLLKREGYDVVGVTMQIWPQPE--DKEKACCSLDAVNDARRVAW 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + HYV ++ + F   VI  F   Y AG TP PC+ CNR +KF   L     +GAD +
Sbjct: 61  KLGIPHYVLNFRDDFEEKVIRYFCREYLAGRTPNPCIACNRYLKFDLFLQKALAMGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY R R    ++   R  + + +D  +DQSY L+   Q QL    FPLG  KKE  R
Sbjct: 121 STGHYARIRR---NEQTERYELRKGLDQTKDQSYALYNLQQDQLQHTLFPLGTYKKEETR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA+E GL +A K DSQ+ICFV    +   ++         G  V  +G ++G H GI  
Sbjct: 178 KLAQEGGLPVAFKKDSQEICFV-DHSHAQFIEEYLQSPLTPGKFVDADGSVVGIHQGIYR 236

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQ +GLG+AMG P++V  ++  S+ V VG  E L    +   ++N++      +   
Sbjct: 237 YTIGQHKGLGLAMGYPVYVTKIEPESNTVRVGKMEELFQDALLAEDLNFVSG----EGPT 292

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K  VKIR +   VP  +    +G + V FE  +  +  GQA VFY  D     VLGG
Sbjct: 293 GPMKVQVKIRYNAQAVPAVIHPRAEGKMKVVFEIPQKSITPGQAVVFYDHDI----VLGG 348

Query: 381 GII 383
           G I
Sbjct: 349 GTI 351


>gi|297620680|ref|YP_003708817.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Waddlia chondrophila WSU 86-1044]
 gi|297375981|gb|ADI37811.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Waddlia chondrophila WSU 86-1044]
          Length = 354

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 196/366 (53%), Gaps = 22/366 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK+ GY VIG+ ++ +  + +    G C +  D  D  RVCD 
Sbjct: 5   VVVGLSGGVDSAVAALLLKQQGYSVIGLFMKNWEEKDSD---GQCSSAADYEDVSRVCDL 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++ +Y  ++ + + ++V       +  G TP P V CNR +KF  L    ++LG D LA
Sbjct: 62  LDIPYYGVNFSQEYWDSVFADCLEEFKKGHTPNPDVLCNREIKFKVLFEKAKELGGDYLA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R+R+Y G+       + +  D ++DQSYFL+      L  + FP+G + K+ VR+
Sbjct: 122 TGHYCRTRIYEGE-----AQLLKGADPDKDQSYFLYMIKSDILQSVLFPIGSLPKKEVRE 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +AR   L +  K DS  ICF+ +  + + + +  +     G+   ++G+ +GRH+G+  Y
Sbjct: 177 IARRHNLPVHSKKDSTGICFIGERNFKEFLGQYISFA--PGEFQTMDGKTVGRHDGVPFY 234

Query: 263 TIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFED 318
           TIGQRRGLG+   G+  FVV  D   + V V       +L    +Y  E++W+     + 
Sbjct: 235 TIGQRRGLGIGGAGDAWFVVGKDVEKNIVFVEQGADHPALYATDLYADELSWVSS---KG 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A    F C  KIR  Q   P  +   ++G+  V+F + +  V   Q+ VFY  D      
Sbjct: 292 APEKTFVCSSKIRYRQKDKPCRITAIEEGIARVEFPEKQRAVTPRQSIVFYDGDV----C 347

Query: 378 LGGGII 383
           LGGG+I
Sbjct: 348 LGGGMI 353


>gi|51473501|ref|YP_067258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia typhi str. Wilmington]
 gi|73920129|sp|Q68X66|MNMA_RICTY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51459813|gb|AAU03776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia typhi str. Wilmington]
          Length = 358

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 178/367 (48%), Positives = 239/367 (65%), Gaps = 13/367 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVAMSGGVDSS VAA+L   G+ VIG+TLQLY+   A  +K +CCAG+D+YDA+ V + 
Sbjct: 4   IVVAMSGGVDSSAVAAMLHEQGHHVIGITLQLYDYGIAVGKKNACCAGKDIYDAKMVANK 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV DYE +F+ +VI  F +SY  GETPLPCV CN+ VKF DL++  ++LGAD LA
Sbjct: 64  LGIPHYVLDYENKFKESVIDNFVNSYLHGETPLPCVQCNKLVKFRDLINTAKELGADKLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R       +G     +   +D  +DQSYFLF  T++QL  L FPLG   K   R 
Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDAAKDQSYFLFTITREQLEYLIFPLGGFTKYETRK 178

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + GLD+ADK DSQDICFV  G Y  V+ +I    +  G IVH+NG  LG H+GIINY
Sbjct: 179 LASKFGLDVADKPDSQDICFVPDGNYKTVINKIRPEASTSGKIVHINGFELGEHSGIINY 238

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+A  EPL+VV +D +++ V VG   +L VH   ++++NWL D + ++   +
Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDN---E 295

Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VKIRS++ P    + +  +D + V F  +E  VA GQACV Y  +    RVLGGG
Sbjct: 296 KLAVDVKIRSTRPPCHAEISKLCNDKIKVQFLSAEKAVAPGQACVIYAGE----RVLGGG 351

Query: 382 IISGSKR 388
            I+ + R
Sbjct: 352 WITRNIR 358


>gi|218663598|ref|ZP_03519528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli IE4771]
          Length = 345

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 210/345 (60%), Positives = 262/345 (75%), Gaps = 1/345 (0%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++
Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300

Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352
           NWLGD    DA    GF C+ K+RS++ P P  +  +    YVD 
Sbjct: 301 NWLGDETLADAASGGGFACYAKVRSTRAPAPAVLHVDATCTYVDL 345


>gi|157803967|ref|YP_001492516.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia canadensis str.
           McKiel]
 gi|166235078|sp|A8EZE8|MNMA_RICCK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157785230|gb|ABV73731.1| hypothetical protein A1E_04020 [Rickettsia canadensis str. McKiel]
          Length = 368

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 178/364 (48%), Positives = 243/364 (66%), Gaps = 13/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVAMSGGVDS+ VAA+L   GY+VIG+TLQLY+   A  +K +CCAGQD+YDA+ V + 
Sbjct: 11  IVVAMSGGVDSAAVAAMLHAQGYNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANK 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   ++LGA  LA
Sbjct: 71  LGIPHYVLDYESKFKESVIENFVDSYLQGETPLPCVQCNKSVKFKDLIKTAKELGAAQLA 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG   K+  R 
Sbjct: 131 TGHYVRK--INGDNGAE---LHIGIDPAKDQSYFLFTTTKEQLDYLSFPLGWFTKDETRK 185

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + GL++A+K DSQDICFV  G Y +V+ +I  G + +G I+H+NG  LG H+GIINY
Sbjct: 186 LASKFGLEVANKPDSQDICFVPDGNYKNVINKIRPGSSKKGKIIHVNGFELGEHSGIINY 245

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+A  EPL+V+ +D N++ V VGP  +L +    ++++NWL D + ++   +
Sbjct: 246 TIGQRRGLGIAYNEPLYVIKIDPNNNIVYVGPESALNMQEFIIKDVNWLADEIKDN---E 302

Query: 323 GFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +  VKIRS++ P    + +  DD + V F   E  VA GQACV Y  +    RVLGGG
Sbjct: 303 KLEVAVKIRSTRLPSLAEISKLGDDKMKVKFLSEEKAVAPGQACVIYDGE----RVLGGG 358

Query: 382 IISG 385
            I+ 
Sbjct: 359 WITR 362


>gi|219669597|ref|YP_002460032.1| tRNA-specific 2-thiouridylase MnmA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539857|gb|ACL21596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfitobacterium hafniense DCB-2]
          Length = 370

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 147/376 (39%), Positives = 204/376 (54%), Gaps = 23/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ   S       G CC+   + DARR
Sbjct: 5   EKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSG-GPDDVGGCCSITAIDDARR 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + HYV ++   F   VI  F ++Y +GETP PC  CNR V++ + L   R LGA
Sbjct: 64  VAHQLGIPHYVLNFRTIFEENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY +    + D    R +M RP+D  +DQ+Y L+  TQ QL    FPL D KKE
Sbjct: 124 DYLATGHYAK---ILQDPDSGRYLMSRPVDTWKDQTYMLYNLTQDQLKHTLFPLADYKKE 180

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +R++A E GL  ++ K DSQ+ICF+    Y   ++  +      G+ V   G ILGRH 
Sbjct: 181 HIREMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPDKIKPGNFVDRQGNILGRHQ 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+INYT+GQR+GLGV  G+P+FV+  +   + VI+G  + +  H +   ++NW+     E
Sbjct: 241 GLINYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAITGLE 300

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----------VYVDFEKSEVGVASGQACVF 367
             +        KIR         +    D           V V+F   +  +  GQA VF
Sbjct: 301 GPLT----VQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVF 356

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     V+GGG I
Sbjct: 357 YQGD----LVVGGGKI 368


>gi|163815111|ref|ZP_02206492.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759]
 gi|158449520|gb|EDP26515.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759]
          Length = 363

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 138/367 (37%), Positives = 200/367 (54%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
              V V MSGGVDSSV A LLK  GY+VIGVT+Q++             CC    V DAR
Sbjct: 8   KKTVCVGMSGGVDSSVAALLLKEQGYNVIGVTMQIWQDEDRDVVSAHAGCCGLSAVDDAR 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YV +++E F+  VI  F   Y  G TP PC+ CNR VK+  LL+    +G
Sbjct: 68  RVASQLDIPYYVMNFKEEFKKYVIDYFVDEYKHGRTPNPCIACNRYVKWESLLTRCMAIG 127

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY R           R  +     +++DQ+Y L+  TQ+QL     P+G+  K
Sbjct: 128 GDYIATGHYARIIQLP----NGRYTLQEARGIDKDQTYALYNLTQEQLARTLMPVGEYSK 183

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R +A + GL +A K DSQDICFV  G Y   ++      A+ GD V ++G ++GRH 
Sbjct: 184 PEIRKIAEDHGLMVAHKPDSQDICFVPDGDYAGYLENEAGLKAVPGDFVDIHGNVIGRHK 243

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQR+GLG+AMG P+FVV +   +++V++G    +   R+    +N++      
Sbjct: 244 GIIHYTIGQRKGLGLAMGHPVFVVDIIPETNQVVIGENGDVFSERLTCNRLNFMSIAD-- 301

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             + +      KIR +       +++ ++D V   F++    V  GQA VFY  D     
Sbjct: 302 --LTEPMHVKAKIRYNHKGSMCTIRKIDEDLVEAVFDEPVRAVTKGQAVVFYECD----H 355

Query: 377 VLGGGII 383
           VLGGG I
Sbjct: 356 VLGGGSI 362


>gi|313668065|ref|YP_004048349.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Neisseria lactamica ST-640]
 gi|313005527|emb|CBN86963.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Neisseria lactamica 020-06]
          Length = 383

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 187/383 (48%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 15  LRMNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGE 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +++    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDGDI----CLGGGIIQTTDKP 378


>gi|78065260|ref|YP_368029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. 383]
 gi|123569299|sp|Q39JI1|MNMA_BURS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77966005|gb|ABB07385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. 383]
          Length = 383

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/402 (31%), Positives = 184/402 (45%), Gaps = 40/402 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAYDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+I+G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKIVGEHIG 231

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       G+P FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKSGNGDPWFVAAKDIASNTLYVVQGHDHPWLLARELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDFEKSEVGVA 360
           +      +   +GF C  K R  Q           P P      +    + F+ ++  V 
Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACAFGAATPGPA----GEARFSLAFDDAQWAVT 343

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402
            GQ+ V Y  +      LGGGII  +      + +    + +
Sbjct: 344 PGQSAVLYDGEI----CLGGGIIESAVIGQPGQTAPARALAE 381


>gi|84516171|ref|ZP_01003531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Loktanella vestfoldensis SKA53]
 gi|84509867|gb|EAQ06324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Loktanella vestfoldensis SKA53]
          Length = 379

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 196/381 (51%), Positives = 255/381 (66%), Gaps = 12/381 (3%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
            + +NSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG
Sbjct: 4   ESPINSLGFAKAPADTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKG 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +CCAG+D++DARRV + +   HYV DYE  FR AV+  FA SY  G TP+PC+ CN  VK
Sbjct: 64  ACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVK 123

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F DLL   R L AD +ATGHYI+ ++     G +   +    D  +DQSYFLF+TTQ QL
Sbjct: 124 FKDLLQTARDLDADCMATGHYIQRKM-----GVQGAELHSAADAAKDQSYFLFSTTQDQL 178

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
             LRFPLG  K K+  R LA + GL +ADK DSQDICFV  G Y  V++++  G A  G 
Sbjct: 179 DYLRFPLGHHKSKDETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAASPGT 238

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           IV +NGQ+LG+HNG+I+YT+GQRRGLG+  + +PL+VV LD +  +VIVGP++ L   R+
Sbjct: 239 IVDINGQVLGQHNGVIHYTVGQRRGLGIGGLADPLYVVRLDVDKKQVIVGPKDMLATRRV 298

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362
            LREINW+G G   D  +   +  V++RS++ P    ++  +D    V+   +E GV+ G
Sbjct: 299 PLREINWIGGGKLTD--IAERQIAVRVRSTRPPTDAILRPISDTEAEVELLVAEQGVSPG 356

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QACVFY +DS   RVLGGG I
Sbjct: 357 QACVFYDTDS--TRVLGGGWI 375


>gi|171464102|ref|YP_001798215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193640|gb|ACB44601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 370

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 185/388 (47%), Gaps = 30/388 (7%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNS  +  + +  +VV+ MSGGVDSSV A +LK  G++VIG+ ++ +    + +    C
Sbjct: 3   PLNSSSIPSS-RPKKVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDSDE---YC 58

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A QD  D   V D I +     ++   +R  V   F   YAAG TP P V CN  +KF 
Sbjct: 59  SARQDWLDVVSVADMIGIDVEAVNFATEYRECVFADFLREYAAGRTPNPDVLCNAEIKFK 118

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L     LGAD +ATGHY R R   G     +  + + +D+ +DQSYFL   TQQQL +
Sbjct: 119 AFLDHAMSLGADAIATGHYARVRHESG-----KVQLLKAVDVSKDQSYFLHRLTQQQLAN 173

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FPLG++ K  VR +A ++GL  A K DS  ICF+ +  + + + R    +   G I  
Sbjct: 174 VMFPLGEIPKTEVRKIADQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRV--PGPIKT 231

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLE 299
             G+ +G H G+  +T+GQR+G+G+       G+  +V   D  ++ + V        L 
Sbjct: 232 PEGKTVGEHMGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDIPNNTLYVAQGHEHPWLL 291

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEV 357
              +   + +W+   +             K R  Q      +    +     + F  ++ 
Sbjct: 292 AKTLSAMDASWVSGEVPSLG-----SYSAKTRYRQADSACTMSAGAEAQSFELSFLDAQW 346

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385
            V  GQ+ V Y  D      LGGGIIS 
Sbjct: 347 AVTPGQSAVLYDGDI----CLGGGIISA 370


>gi|254437717|ref|ZP_05051211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 307]
 gi|198253163|gb|EDY77477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 307]
          Length = 379

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/379 (51%), Positives = 250/379 (65%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 6   PLNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV + +   HYV DYE  FR AVI  FA SY AG TP+PC+ CN  VKF 
Sbjct: 66  CAGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFK 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   + L AD +ATGHYI+ ++     G R   +    D  RDQSYFLF+T  +QL  
Sbjct: 126 DLLETAKDLDADCMATGHYIQRKM-----GPRGAQLHCAEDANRDQSYFLFSTKPEQLEY 180

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K++ R+LAR+ GL +ADK DSQDICFV  G Y  V++++  G A  G+IV
Sbjct: 181 LRFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGNIV 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            ++G +L +H G+I+YTIGQRRGLG+  + +PL+VV LD +   VIVGP++ L    + +
Sbjct: 241 DIDGTVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKDLLTTRTVPV 300

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD  F+          VKIRS++ P+   V+  +     ++    E GVA GQA
Sbjct: 301 REINWLGDDAFDSKT--ERHISVKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQA 358

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY SDS  +R+ GGG I
Sbjct: 359 CVFYDSDS--SRIFGGGWI 375


>gi|240014473|ref|ZP_04721386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae DGI18]
 gi|240120995|ref|ZP_04733957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID24-1]
 gi|268599754|ref|ZP_06133921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae MS11]
 gi|268583885|gb|EEZ48561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae MS11]
          Length = 383

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 188/383 (49%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           +++    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378


>gi|16125150|ref|NP_419714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus CB15]
 gi|14195261|sp|P58074|MNMA_CAUCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13422162|gb|AAK22882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus CB15]
          Length = 383

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/379 (53%), Positives = 260/379 (68%), Gaps = 4/379 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A  RKG+CCAGQD+ DAR
Sbjct: 8   PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 68  MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 127

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++  +    +G  R  + R  D  +DQSYFLFATT++QL  LRFPLG M K
Sbjct: 128 AEAMATGHYVQRAMPG--NGGNRPELRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 185

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A  +GL IADK DSQDICFV +GKY  V+ RI    A  GD+VHL+G++LGRH 
Sbjct: 186 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 245

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G+  YTIGQRRGL +A+G+PLFVV ++ +  +VIVGPRE+L    + L+E +WLG     
Sbjct: 246 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 305

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E A  DG +   ++RS+++PVP  +   D  + V F+ +E GVA GQACV Y   ++  R
Sbjct: 306 EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPDR 364

Query: 377 VLGGGIISGSKRSDAVEES 395
           VLGGG I+G+ R   +  +
Sbjct: 365 VLGGGFIAGTTRQMDLNAA 383


>gi|294339421|emb|CAZ87777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas sp. 3As]
          Length = 368

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 177/377 (46%), Gaps = 26/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV A LLK+ GY V+G+ ++ +     S+    C   QD  DA  V D 
Sbjct: 9   VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSE---YCSTRQDWLDAASVADR 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++   ++  V   F   YAAG TP P V CN  +KF   L    +LGAD +A
Sbjct: 66  IGIDIEAVNFAAEYKERVFAEFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R     +      + R +D  +DQSYFL    Q QL    FP+G++ K  VR 
Sbjct: 126 TGHYARVR-----ETDHGFELLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GL  A K DS  ICF+ +  + D + R        G +    G+ +G H G+  Y
Sbjct: 181 VAETIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGEHLGLAFY 238

Query: 263 TIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           T+GQR+G+         GEP FV   D   +++IV        L  H +     +W+   
Sbjct: 239 TLGQRKGIGLGGSNSGNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWVSGT 298

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              + V   F    K R  Q       Q +  +   + F+  +  V  GQ+ V Y  +  
Sbjct: 299 APTEEV---FGYGAKTRYRQVDAACRFQDQGPERFTLKFDAPQWAVTPGQSAVLYDGEV- 354

Query: 374 EARVLGGGIISGSKRSD 390
               LGGGII  + R+D
Sbjct: 355 ---CLGGGIIEAASRND 368


>gi|254499186|ref|ZP_05111866.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella drancourtii LLAP12]
 gi|254351576|gb|EET10431.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella drancourtii LLAP12]
          Length = 361

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 192/376 (51%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V MSGGVDSSV A LLK  GY+V G+ ++ +         G C A QD+ DA+ VC+
Sbjct: 4   KIIVGMSGGVDSSVAAWLLKEQGYEVEGLFMKNWEQDDTD---GFCPAAQDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+  +  ++ E++   V + F S Y  G TP P V CN+ +KF+  L+    LGAD +
Sbjct: 61  QLNIPLHSVNFSEQYWERVFMHFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALDLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++++           + +  D ++DQ+YFL A     L    FP+GD  K  +R
Sbjct: 121 ATGHYAKNKIS-----NNIGHLLKAKDRDKDQTYFLHAVDPAALAKTLFPIGDYTKPEIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   +K     +A  G+I +++G +LG+H+G++ 
Sbjct: 176 EFAKQLGLVTQAKKDSTGICFIGEKRFKTFLKEFI--LAKPGEIKNMDGSVLGKHDGLMF 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+        +P +VV  D  ++ + V        L    +    I+WL D
Sbjct: 234 YTLGQRQGLGIGGTQNSTEDPWYVVDKDVATNTLYVAQGSQHPMLYAQGLICGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372
                 +     C+ K R  Q      +   D  + YV F   +  V  GQ  VFY  + 
Sbjct: 294 CKDNLPLT----CYAKTRYRQAEQGCMISPPDGDLHYVMFSSPQRAVTPGQYIVFYDKN- 348

Query: 373 NEARVLGGGIISGSKR 388
              + LGG  I    R
Sbjct: 349 ---QCLGGATIEQIIR 361


>gi|331000512|ref|ZP_08324184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parasutterella excrementihominis YIT 11859]
 gi|329571476|gb|EGG53161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parasutterella excrementihominis YIT 11859]
          Length = 388

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 184/376 (48%), Gaps = 27/376 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VVV +SGGVDS+V A LLK+ GY+VIG+ ++ +     S+    C + QD+ DA  V 
Sbjct: 31  KTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVA 87

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +     ++ + +++ V   F S Y+AG TP P V CN  +KF   L    +LGAD 
Sbjct: 88  DVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADK 147

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R   G        + + +D  +DQSYFL    Q QL    FP+GDM K  V
Sbjct: 148 IATGHYARVRERDG-----LFELLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEV 202

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ +  + + + R  A     G I   +G+I+G H G+ 
Sbjct: 203 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLAN--KPGPIKTPDGRIVGEHIGLS 260

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+G+GV       GEP FV   D  ++ + +        L+   +     NW+ 
Sbjct: 261 YYTLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWIS 320

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               E   + G     K R         V R DD  V V        V  GQ+ VFY  +
Sbjct: 321 GTAPEAGRMLGL----KTRYRMADQECKVIRTDDESVVVSSLDPLWAVTPGQSAVFYDEE 376

Query: 372 SNEARVLGGGIISGSK 387
                 LGG II  S+
Sbjct: 377 V----CLGGAIIGTSR 388


>gi|297181386|gb|ADI17576.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase
           domain-protein [uncultured alpha proteobacterium
           HF0130_06E21]
          Length = 454

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 206/396 (52%), Positives = 251/396 (63%), Gaps = 20/396 (5%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             +NSL  D+ P + RVVVAMSGGVDSSV AALL   GYDV+G+TLQLY+   A+ R  +
Sbjct: 73  NTMNSLGFDRPPAETRVVVAMSGGVDSSVTAALLHEQGYDVVGITLQLYDHGAATARFKA 132

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+YDA RV D I   HYV DYE RFR  VI  FA +Y  GETP+PCV CN+TVKF
Sbjct: 133 CCAGQDIYDAYRVADMIGFPHYVLDYESRFREDVIENFADAYVRGETPIPCVTCNQTVKF 192

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DL++  R LGAD LATGHYIR      + G     + R +D  RDQSYFLFATT  QL 
Sbjct: 193 RDLVATARDLGADALATGHYIRR-----EAGPGGAELHRAVDASRDQSYFLFATTHDQLD 247

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLGDM K+ VR+ AR +GL IA+K DSQDICFV  GKY  +V+++  G A  GDIV
Sbjct: 248 FLRFPLGDMPKDQVREHARRLGLAIAEKPDSQDICFVPDGKYAQIVEKLRPGAAEPGDIV 307

Query: 247 HLNGQILGRHNGIINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           HLNG +LG H GI+N+T          G   A  + L+VV LD  + RVIVGPRE+L   
Sbjct: 308 HLNGTVLGEHEGILNFTIGQRRGIGIGGRKDADADALYVVRLDPETRRVIVGPREALATS 367

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVA 360
           R+ +  +NWLG+G  +    +G +  VKIRS+ +PVP  V         V+    E GV+
Sbjct: 368 RVPVNGLNWLGEG--DAPPAEGVEVSVKIRSTMEPVPGRVAGISCGAAMVELAMPEFGVS 425

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
            GQA VFY      ARVLGGG I   +R+D   E  
Sbjct: 426 PGQAAVFYDG----ARVLGGGWI---QRNDERSEGA 454


>gi|255263925|ref|ZP_05343267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thalassiobium sp. R2A62]
 gi|255106260|gb|EET48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thalassiobium sp. R2A62]
          Length = 378

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/386 (51%), Positives = 251/386 (65%), Gaps = 14/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + +   LNSL   K P D RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MSLDQ--PLNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAA 58

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             ++G+CCAG D++DARRV   +   HYV DYE  F+ AVI  FA SY AG TP+PC+ C
Sbjct: 59  LAKQGACCAGLDIHDARRVAQEMGFPHYVLDYENTFKEAVIDEFADSYLAGATPVPCIRC 118

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 119 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GDHGAELHCATDANRDQSYFLFST 173

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T  QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 174 TLDQLDYLRFPLGHLPSKNETRALAEKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 233

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  GDIV +NG +LG HNG+I+YT+GQRRGLG+  + +PL+VV LD ++ +VIVGP++ L
Sbjct: 234 AEPGDIVDINGTVLGTHNGVIHYTVGQRRGLGIGGLADPLYVVKLDVDAKQVIVGPKDML 293

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               I +REINWLGD  F+ +V       VK+RS++ P    V+  +     V+    E 
Sbjct: 294 STRTIPVREINWLGDDAFDASVERNI--MVKVRSTRPPREAIVRPISATEATVELLTPEE 351

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY+ DS   R+LGGG I
Sbjct: 352 GVSPGQACVFYSPDS--PRILGGGWI 375


>gi|116619734|ref|YP_821890.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255775|sp|Q02BG1|MNMA_SOLUE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116222896|gb|ABJ81605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 371

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 153/378 (40%), Positives = 214/378 (56%), Gaps = 22/378 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK------ASKRKGSCCAGQDV 73
           +  + VAMSGGVDSSVVAA+L R+G  V+G+T+QL+N R+           G CC+  DV
Sbjct: 3   EQPIAVAMSGGVDSSVVAAMLVREGRTVVGMTMQLWNQRRLPELAVEGATTGRCCSLDDV 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDARRV + + + +YV ++EE+F   V+ PF   Y AG TP+PC  CN  +KF   L + 
Sbjct: 63  YDARRVAEQVGIPYYVVNFEEQFEEHVVKPFVDEYLAGRTPIPCTLCNNYIKFDRFLEMA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +GA  +ATGHY R R    D+   R  + R +D  +DQ+YFLF  TQ QL    FPLG
Sbjct: 123 DSVGAYHMATGHYARIRH---DEATGRYQLLRAVDDSKDQTYFLFGLTQAQLARTLFPLG 179

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHL 248
           ++ K  VRD+AR M L +A K DSQ+ICFV  G Y   +        +      G+IV  
Sbjct: 180 ELNKPEVRDMARSMDLAVAAKGDSQEICFVPNGDYAAFMSAYLKEKGVAVEETSGEIVTT 239

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G+ LGRH G+  +T+GQR+GLGVA GEPL+V+  +  + +V+VG  + L       +++
Sbjct: 240 DGRTLGRHEGVHRFTVGQRKGLGVATGEPLYVISTNPANHQVVVGGNDDLLRGGFTAKDV 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACV 366
           NW+     E       +  VKIR+     P  +    + D V V F++++  V  GQ  V
Sbjct: 300 NWISIAGVE--PGAPVRAQVKIRNRHAAAPARLVATSDRDRVEVVFDEAQRAVTPGQGAV 357

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  D     VLGGG I 
Sbjct: 358 FYAGD----LVLGGGWIE 371


>gi|119386805|ref|YP_917860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paracoccus denitrificans PD1222]
 gi|205816904|sp|A1B9H0|MNMA_PARDP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119377400|gb|ABL72164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paracoccus denitrificans PD1222]
          Length = 389

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 190/385 (49%), Positives = 250/385 (64%), Gaps = 14/385 (3%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
            +  + +NSL   K P   RVVVAMSGGVDSSVVAA+L   GYDVIGVTLQLY+   A  
Sbjct: 11  AAPYSTVNSLGFPKPPAQTRVVVAMSGGVDSSVVAAMLAAQGYDVIGVTLQLYDHGAALA 70

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           +KG+CCAGQD++DARRV + I   HYV DYE +FR +VI  FA +Y AG TP+PC+ CN 
Sbjct: 71  KKGACCAGQDIHDARRVAERIGFPHYVLDYENKFRESVIEEFADAYLAGATPVPCIRCNE 130

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            VKF DLL   R+L AD +ATGHYIR  +     G +   +    D  RDQSYFLF+TTQ
Sbjct: 131 RVKFRDLLQTARELDADCMATGHYIRRLM-----GPKGAELHMAADPARDQSYFLFSTTQ 185

Query: 183 QQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           +QL  LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A 
Sbjct: 186 EQLDFLRFPLGGLASKAETRALAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGAAD 245

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            G+IV ++G +LG H G+I+YTIGQ R      +G+PL+VV L+ ++ RV+VGP+++L  
Sbjct: 246 PGEIVDMDGNVLGSHRGVIHYTIGQRRGLGIGGLGDPLYVVRLEPDTRRVVVGPKQALAT 305

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359
             + + E+NWLGD  FED +        +IRS++ P P  ++        ++    E GV
Sbjct: 306 KIVPVTEVNWLGDEPFEDEIA----VTARIRSTRPPRPAILRVTGKHRAEIELLDPEEGV 361

Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384
           + GQACVFY ++   +RVLGGG IS
Sbjct: 362 SPGQACVFYATE--GSRVLGGGWIS 384


>gi|303256580|ref|ZP_07342594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderiales bacterium 1_1_47]
 gi|302860071|gb|EFL83148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderiales bacterium 1_1_47]
          Length = 378

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 184/376 (48%), Gaps = 27/376 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VVV +SGGVDS+V A LLK+ GY+VIG+ ++ +     S+    C + QD+ DA  V 
Sbjct: 21  KTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVA 77

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +     ++ + +++ V   F S Y+AG TP P V CN  +KF   L    +LGAD 
Sbjct: 78  DVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADK 137

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R   G        + + +D  +DQSYFL    Q QL    FP+GDM K  V
Sbjct: 138 IATGHYARVRERDG-----LFELLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEV 192

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ +  + + + R  A     G I   +G+I+G H G+ 
Sbjct: 193 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLAN--KPGPIKTPDGRIVGEHIGLS 250

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+G+GV       GEP FV   D  ++ + +        L+   +     NW+ 
Sbjct: 251 YYTLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWIS 310

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               E   + G     K R         V R DD  V V        V  GQ+ VFY  +
Sbjct: 311 GTAPEAGRMLGL----KTRYRMADQECKVIRTDDESVVVSSLDPLWAVTPGQSAVFYDEE 366

Query: 372 SNEARVLGGGIISGSK 387
                 LGG II  S+
Sbjct: 367 V----CLGGAIIGTSR 378


>gi|197104258|ref|YP_002129635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phenylobacterium zucineum HLK1]
 gi|196477678|gb|ACG77206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phenylobacterium zucineum HLK1]
          Length = 371

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/373 (52%), Positives = 254/373 (68%), Gaps = 7/373 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+   A ++KG+CCAGQD++DAR
Sbjct: 4   PAGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAVQKKGACCAGQDIHDAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RF+  VI  FA +Y  GETP+PC+ CN+TVKF DLL V R LG
Sbjct: 64  TAAEGIGIPHYVLDYESRFKQQVIEDFADAYLRGETPIPCIRCNQTVKFRDLLDVARDLG 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+R      + G     + R  D  RDQSYFLFATT +QL  LRFPLG M K
Sbjct: 124 AQAMATGHYVRR-----EAGAEGPELHRAADPARDQSYFLFATTAEQLDYLRFPLGAMPK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR  A E+GL +ADK DSQDICFV +G+Y  ++ R+    A  GDIVHL+G++LGRH 
Sbjct: 179 PAVRAAAAELGLAVADKPDSQDICFVPEGRYTTIIDRLRPQGAEPGDIVHLDGRVLGRHE 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YTIGQRRGL VA+G+PLFVV +D ++ +V+VGPRE+L    + L+E NW+G G   
Sbjct: 239 GVTRYTIGQRRGLNVAVGDPLFVVRIDADARQVVVGPREALLTRALGLKETNWIGGGPSI 298

Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +A  +  +    ++RS+++PVP  +   D    V F+  E GVA GQACV Y  +S   R
Sbjct: 299 EAACEAGRPVLARVRSTREPVPGRLSLVDGVPGVVFDNPEEGVAPGQACVLYAPESP-TR 357

Query: 377 VLGGGIISGSKRS 389
           VLGGG I+G+ R 
Sbjct: 358 VLGGGFIAGTVRD 370


>gi|260576792|ref|ZP_05844777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sp. SW2]
 gi|259021044|gb|EEW24355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sp. SW2]
          Length = 379

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 195/379 (51%), Positives = 251/379 (66%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL L K P++ RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 6   PLNSLGLAKPPQETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV + +   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF 
Sbjct: 66  CAGRDIHDARRVAEAMGFPHYVLDYENTFRAAVIDEFADAYLAGATPVPCIRCNERVKFK 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+  R+L AD +ATGHYI+ +L     G     +    D  RDQSYFLF+TT +QL  
Sbjct: 126 DLLATARELDADCMATGHYIQRKL-----GLHGPELHSATDPARDQSYFLFSTTAEQLDY 180

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K   R LA   GL +ADK DSQDICFV  G Y  V++++  G A  G IV
Sbjct: 181 LRFPLGHLASKAETRALAARYGLAVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGLIV 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L+G  LG H G+I+YTIGQRRGLG+    +PL+V+ LD  + +V+VGP+ +L   R+ L
Sbjct: 241 GLDGTPLGEHRGVIHYTIGQRRGLGIGGVADPLYVLRLDPETRQVVVGPKAALSTRRVPL 300

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD  F+      +   VK+RS++ P P  V+  +     V+    E G+++GQA
Sbjct: 301 REINWLGDAAFDSQP--EWLLNVKVRSTRPPRPALVRPLSATEAEVELLAPEDGISAGQA 358

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY  +   +RVLGGG I
Sbjct: 359 CVFYAPE--GSRVLGGGWI 375


>gi|311105115|ref|YP_003977968.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759804|gb|ADP15253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter xylosoxidans A8]
          Length = 372

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 174/383 (45%), Gaps = 28/383 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K+ K  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ 
Sbjct: 3   QKSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLL 59

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L    
Sbjct: 60  DAASVADLVGVEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAM 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+ +ATGHY R R      G  +  + + +D  +DQSYFL    Q QL    FPLG+
Sbjct: 120 ALGAEHIATGHYARVREVPAVGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTMFPLGE 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           + K  VR +A E+GL  A K DS  ICF+ +  + + + R        G I+   GQ +G
Sbjct: 180 IHKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGPIMTPEGQKVG 237

Query: 255 RHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVH 301
           RH G+  YT+GQR          R       E  +V   D   + + V        L   
Sbjct: 238 RHEGLSFYTLGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSG 297

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVA 360
            +  ++ +W+                 K R  Q      +    D    + F + +  V 
Sbjct: 298 ELRAQDASWVAGHAPAAGTYG-----AKTRYRQADAACRLDGAVDGTFSLGFTEPQWAVT 352

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ+ V Y  +      LGGGII
Sbjct: 353 PGQSAVLYDGEV----CLGGGII 371


>gi|319779294|ref|YP_004130207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Taylorella equigenitalis MCE9]
 gi|317109318|gb|ADU92064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Taylorella equigenitalis MCE9]
          Length = 371

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 179/381 (46%), Gaps = 29/381 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV +SGGVDSSV A LLK  GYDV+GV ++ +     S+    C   QD  D   V
Sbjct: 3   KPKVVVGLSGGVDSSVSAYLLKEQGYDVLGVFMKNWEDDDDSEF---CSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            DT+ +     ++   +++ V   F   Y+AG TP P V CN  +KF   L      GAD
Sbjct: 60  ADTLGIDVDAVNFATEYKDRVFSDFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMNTGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G  GK    + + +D  +DQSYFL    Q QL  + FP+G++ K  
Sbjct: 120 FIATGHYARVRAIDGPSGKT-YQLLKGLDPNKDQSYFLHRLNQDQLSKVIFPVGELLKTK 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++ L  A K DS  ICF+ +  + + + +        G I+  +G+++G H G+
Sbjct: 179 VREIAEKLNLSNAKKKDSTGICFIGERPFREFLNKYLP--TKPGPILTDSGELIGEHVGL 236

Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
             YTIGQR+G+G+             +  +V   D  ++ + V        L   ++Y  
Sbjct: 237 SFYTIGQRKGIGIGGVKSHMSLDGVSDAWYVARKDMKNNTLYVVNGHDHPWLLSKKLYAL 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           + +W+ +               K R  Q      ++        + F + +  V  GQ+ 
Sbjct: 297 DASWINEYTPSIG-----TYAAKTRYRQADASCELEFAQGLEFKLKFSEDQWAVTPGQSA 351

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           V Y  D      LGGGII  S
Sbjct: 352 VLYDGDV----CLGGGIIEQS 368


>gi|126726432|ref|ZP_01742273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
 gi|126704295|gb|EBA03387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
          Length = 377

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 192/383 (50%), Positives = 250/383 (65%), Gaps = 12/383 (3%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T LNSL   K P D RVVVAMSGGVDSSVVAA+L   GYDV+GVTLQLY+   A  +KG+
Sbjct: 4   TPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAVLAEQGYDVVGVTLQLYDHGAALAKKGA 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAG+D++DARRV +T+   HYV DYE +F+ AVI  FA SY AG TP+PC+ CN  VKF
Sbjct: 64  CCAGRDIHDARRVAETMGFPHYVLDYENKFKEAVIDEFADSYLAGATPVPCIRCNERVKF 123

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DLL   + L AD +ATGHYI+  +     G  +  + +  D  RDQSYFLF+T Q QL 
Sbjct: 124 KDLLETAKDLDADCMATGHYIQRMM-----GDTKAELHQAADGNRDQSYFLFSTKQDQLD 178

Query: 187 DLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            LRFPLG +  K   R LA + GL +ADK DSQDICFV  G Y  V++++  G A  GDI
Sbjct: 179 YLRFPLGHLTSKAETRALAAKYGLPVADKPDSQDICFVPNGNYAAVIEKLRPGSAEPGDI 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           V  +G ILG HNG+I+YTIGQRRGLG+  + +PL+VV LD +  +V+VG +E L    + 
Sbjct: 239 VDTDGNILGAHNGVIHYTIGQRRGLGIGGLADPLYVVRLDVDKRQVVVGAKELLATRTVP 298

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
           L EINWLGD        D +   V++RS++ P    ++  ++    V+   +E G+++GQ
Sbjct: 299 LGEINWLGDEPL--MSRDEWHLDVRVRSTRPPRGAVLRPISETTATVELITAEEGISAGQ 356

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           ACVFY  D+   R+ GGG I  +
Sbjct: 357 ACVFY--DTESTRIFGGGWIKKA 377


>gi|152978287|ref|YP_001343916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus succinogenes 130Z]
 gi|205811095|sp|A6VLY4|MNMA_ACTSZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150840010|gb|ABR73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus succinogenes 130Z]
          Length = 389

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 205/392 (52%), Gaps = 29/392 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            +L    L +N K ++V+V MSGGVDSSV A +L++ GY V G+ ++ +     +     
Sbjct: 17  PKLTPGQLAENGK-IKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 72

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C A  D+ DA+ VCD + +  +  ++   + + V   F S Y AG TP P + CN+ +KF
Sbjct: 73  CTAAADLADAQAVCDKLGIRLHKINFATEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKF 132

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L      LGAD +ATGHY+R      D       + R +D  +DQSYFL A +++Q+
Sbjct: 133 KAFLEYAAEDLGADYIATGHYVRRSGPDHD-----AHLLRGLDNNKDQSYFLHALSKKQV 187

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
               FP+G+++K  VR +A E+GL  A K DS  ICF+ + K+ D + R     A  GDI
Sbjct: 188 GQSLFPVGEVEKTVVRAVAEELGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGDI 245

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGPRES--- 297
               G+++GRH G++ +T+GQR+GLG+   +       +VV  D  ++ ++V        
Sbjct: 246 KTTEGEVIGRHQGLMYHTLGQRKGLGIGGIKGKDENAWYVVEKDLKNNVLVVAQGHDNSA 305

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSE 356
           L+   +  +++ W+     E  +     C VK R  Q  +    V  NDD V V F++ +
Sbjct: 306 LQSSGLIAKQLTWVS----EQPLRKTLHCTVKTRYRQTDIACEVVPVNDDTVEVHFDEPQ 361

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           + V  GQ+ VFY  +      LGGGII    +
Sbjct: 362 IAVTPGQSAVFYQGE----ECLGGGIIETQIK 389


>gi|163747144|ref|ZP_02154500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanibulbus indolifex HEL-45]
 gi|161379705|gb|EDQ04118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanibulbus indolifex HEL-45]
          Length = 380

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 186/386 (48%), Positives = 245/386 (63%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + +   LNSL   K P D RVVVAMSGGVDSSVVAA+L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDQTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG D+ DARRV + +   HYV DYE  F++AVI  FA SY  G TP+PC+ C
Sbjct: 61  LAKKGACCAGVDIQDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G+    +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GENGPELHAAADGNRDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T++QL  LRFPLG +  K+  R LA + GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 176 TEEQLDYLRFPLGHLPSKDDTRALAAKYGLVVADKPDSQDICFVPNGDYAAVIRKLRPEA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV   G +L +H G+I+YTIGQRRGLG+  + +PL+VV LD     V+VGP+  L
Sbjct: 236 ADPGNIVDTEGNVLAKHEGVIHYTIGQRRGLGIGGLADPLYVVKLDAERKEVVVGPKSML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              +I +REINWLGD          +   V++RS++ P    ++  +     V+   +E 
Sbjct: 296 ATRKIPVREINWLGDEPLTSR--SEWNITVRVRSTRPPRDAILRPISATEAEVELLTAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  +S   R+ GGG I
Sbjct: 354 GVSPGQACVFYDPES--TRIFGGGWI 377


>gi|261377622|ref|ZP_05982195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria cinerea ATCC 14685]
 gi|269146376|gb|EEZ72794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria cinerea ATCC 14685]
          Length = 367

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 189/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD++ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IDQGADIIATGHYARKEVRNGT-----HYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G+H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GKHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +      ++      +   K R      P  ++  +D+ V + F++S+  V  GQ+ V Y
Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMVDAPCELRYLDDETVELVFDESQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 EGDV----CLGGGIIQSTDKP 362


>gi|160871950|ref|ZP_02062082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsiella grylli]
 gi|159120749|gb|EDP46087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsiella grylli]
          Length = 361

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 180/376 (47%), Gaps = 27/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV+V +SGGVDSSV A LLK  GY V G+ ++ +        +  C A  D+ DA+ 
Sbjct: 2   KKKRVMVGLSGGVDSSVAALLLKEQGYQVEGLFMKNWEEDD---TEVYCSASTDIADAQA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD + +     ++   + NAV + F + Y  G TP P + CN+ +KF   L      GA
Sbjct: 59  ICDKLAIPLRTINFAAEYWNAVFMHFLAEYRRGRTPNPDILCNKEIKFKAFLQYALHTGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY                + +  D  +DQ+YFL+   Q  L    FPL  + K 
Sbjct: 119 DFIATGHYAHKSFQ-----NNMYQLLQCADKNKDQTYFLYTLGQHPLAHTLFPLARLTKS 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+  G   A K DS  ICF+ + K+   ++         G I  L G+ +G+H+G
Sbjct: 174 EVRAIAQSKGFVNATKKDSTGICFIGERKFKRFLQTYLPL--QPGPIETLEGETVGQHDG 231

Query: 259 IINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YTIGQR+GLG+      +G P +VV    N + +IV       +L    +   +++W
Sbjct: 232 LMYYTIGQRQGLGIGGQREKLGVPWYVVDKKLNHNALIVVQGKEHPALFSSNLICTDLHW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +     E  +     C  KIR  Q   P  +Q   +D  +V F+  +  +  GQ+ VFY 
Sbjct: 292 VN----ECPLTLPLNCAAKIRYRQLETPCLIQPCANDAYHVRFKIPQRAITIGQSIVFYQ 347

Query: 370 SDSNEARVLGGGIISG 385
                   LGGGII  
Sbjct: 348 G----PVCLGGGIIDA 359


>gi|83593359|ref|YP_427111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
 gi|123526416|sp|Q2RSS1|MNMA_RHORT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83576273|gb|ABC22824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 377

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 189/384 (49%), Positives = 244/384 (63%), Gaps = 12/384 (3%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSC 67
           ++   L   P   RVVVAMSGGVDSSV AALLK  G+DV+G+T++LY+  K       +C
Sbjct: 1   MSQTPLSPPPVGGRVVVAMSGGVDSSVTAALLKEQGHDVVGLTMRLYDHGKPLGPGARTC 60

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAGQD++DARRV D + ++HYV DYE RFR  VI PFA+SY  GETP+PCV CN+TVKF 
Sbjct: 61  CAGQDIHDARRVADRLGIAHYVLDYESRFREDVIEPFAASYGRGETPIPCVLCNQTVKFR 120

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+    LG   LATGHY+R       DG     + R +D  RDQSYFLFATT+ QL  
Sbjct: 121 DLLAAALDLGGTALATGHYVRRL-----DGPEGPRLYRAVDPGRDQSYFLFATTKGQLGR 175

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           L FPLG M  K+  R +AR +GL + DK DSQDICFV  G Y  VV+R+  G+   G+IV
Sbjct: 176 LLFPLGAMASKDETRAIARRLGLAVGDKPDSQDICFVPDGDYAKVVERLRPGVVEAGEIV 235

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L+G +LG H G+I++T+GQRRG+G+    EPL+V+ LD  + R++VGP  +L    I +
Sbjct: 236 DLDGTVLGHHPGLIHFTVGQRRGVGIGGSAEPLYVIALDTATHRLVVGPHAALARREIAV 295

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQ 363
             +NWLG+G  E     G +  +KIR +  P P  +          V  ++   GVA GQ
Sbjct: 296 SGLNWLGEG--EGPASAGTRARIKIRHASPPFPGQIFPGAAAGEARVVLDEPAHGVAPGQ 353

Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387
           A VFY  D N+ARVLGGG I  S+
Sbjct: 354 AAVFYGLDDNDARVLGGGWIGASR 377


>gi|89895170|ref|YP_518657.1| hypothetical protein DSY2424 [Desulfitobacterium hafniense Y51]
 gi|122482441|sp|Q24US9|MNMA_DESHY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89334618|dbj|BAE84213.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 370

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 145/376 (38%), Positives = 202/376 (53%), Gaps = 23/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ   S       G CC+   + DARR
Sbjct: 5   EKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSG-GPDDVGGCCSITAIDDARR 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + HYV ++   F   VI  F ++Y +GETP PC  CNR V++ + L   R LGA
Sbjct: 64  VAHQLGIPHYVLNFRTIFDENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY +    + D    R  + RP D  +DQ+Y L+  TQ QL    FPL D KKE
Sbjct: 124 DYLATGHYAK---VLQDPQSGRCFLSRPTDTWKDQTYMLYNLTQDQLKHTLFPLADYKKE 180

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +R++A E GL  ++ K DSQ+ICF+    Y   ++  +      G+ V   G ILGRH 
Sbjct: 181 HIREMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPEKIKPGNFVDRQGNILGRHQ 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+INYT+GQR+GLGV  G+P+FV+  +   + VI+G  + +  H +   ++NW+     E
Sbjct: 241 GLINYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAIPGVE 300

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----------VYVDFEKSEVGVASGQACVF 367
             +        KIR         +    D           V V+F   +  +  GQA VF
Sbjct: 301 GPLT----VQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVF 356

Query: 368 YTSDSNEARVLGGGII 383
           Y  +     V+GGG I
Sbjct: 357 YQGE----LVVGGGKI 368


>gi|82703361|ref|YP_412927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
 gi|123544047|sp|Q2Y6T6|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 363

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 181/375 (48%), Gaps = 27/375 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +      +    C + QD+ DA  V D
Sbjct: 5   RVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNWEDDDTDE---YCSSRQDLIDAASVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +     ++   ++  V   F + Y AG TP P V CN  +KF   L     LGAD +
Sbjct: 62  VIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLDHAAGLGADYI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + R     +      + +  D  +DQSYFL+   Q QL    FP+G + K  VR
Sbjct: 122 ATGHYAQVR-----NTDGVFQLLKGEDGTKDQSYFLYRLNQAQLSRALFPIGHLYKRDVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R        G+I   +G ++GRH G++ 
Sbjct: 177 SIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPND--PGEIRTPSGDVMGRHAGLMY 234

Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLDKNSS--RVIVGP-RESLEVHRIYLREINWLGD 313
           YTIGQR+     G     GEP FV   D   +   V+ G     L    +   ++ W+  
Sbjct: 235 YTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVSG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
            +     V       KIR  Q   P  +   D +   ++F + +  VA GQ+ V Y    
Sbjct: 295 KMPRCNWV----YAAKIRYRQSDAPCSITYLDCNKCKIEFAQPQWAVAPGQSVVVY---- 346

Query: 373 NEARVLGGGIISGSK 387
                LGGG+I+ ++
Sbjct: 347 ESKVCLGGGVIAATQ 361


>gi|227824500|ref|ZP_03989332.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904999|gb|EEH90917.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 357

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 142/364 (39%), Positives = 208/364 (57%), Gaps = 11/364 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ ++AMSGGVDSSV A L+   GY+ +G T++LYN+  A     +CC+ +DV DAR V 
Sbjct: 1   MKALIAMSGGVDSSVAAKLMLDQGYECVGCTMKLYNNPDAGCSSKTCCSIRDVEDARSVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + ++VF+Y + FR  V+  FA SY  G+TP PC+DCN+ +KF  L    ++LG D 
Sbjct: 61  VRLGMPYFVFNYMDEFRRDVMETFARSYTLGKTPNPCIDCNKFLKFGALYERAKELGCDT 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R R   G        + R  D ++DQSY L+  TQ+QL   +FPLGD +K   
Sbjct: 121 IVTGHYARIRKRNG-----CYELLRAKDPKKDQSYVLYNLTQEQLAHTQFPLGDYEKTHT 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A E G   + K DSQDICFV  G Y + V+RI +     G  + L+G+ +G H GII
Sbjct: 176 REIAEESGFINSHKPDSQDICFVPNGTYTEAVQRILSYEPQPGPFLTLDGKEIGTHKGII 235

Query: 261 NYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            YTIGQ + LG+   + PL+V+ +D   + VIVGP ++L      ++E NW+   + +  
Sbjct: 236 YYTIGQHKKLGLPQPDGPLYVIAIDPKKNAVIVGPSQALFRRDAAVKEANWISGKVPD-- 293

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               F C VK+R  Q+  P  V     D   + F++ +  +  GQ+ V Y        V+
Sbjct: 294 --APFACLVKVRYRQEAQPAIVTPTGSDTFSILFDEPQRAITPGQSAVLYGLGDETDVVI 351

Query: 379 GGGI 382
           GGGI
Sbjct: 352 GGGI 355


>gi|326577507|gb|EGE27387.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis O35E]
          Length = 392

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 201/386 (52%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F+ ++  V 
Sbjct: 306 TAYKLDWGIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|254805310|ref|YP_003083531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha14]
 gi|254668852|emb|CBA06922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha14]
 gi|319410773|emb|CBY91158.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis WUE 2594]
 gi|325140698|gb|EGC63213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis CU385]
          Length = 367

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|91205346|ref|YP_537701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii RML369-C]
 gi|157826947|ref|YP_001496011.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia bellii OSU 85-389]
 gi|122425762|sp|Q1RJ52|MNMA_RICBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235077|sp|A8GVU7|MNMA_RICB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91068890|gb|ABE04612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii RML369-C]
 gi|157802251|gb|ABV78974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii OSU 85-389]
          Length = 367

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/373 (48%), Positives = 244/373 (65%), Gaps = 13/373 (3%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ N +   +VVAMSGGVDSSVVA +L   GY+VIG+TLQLY+   A+ +K +CCAGQD+
Sbjct: 2   INSNDRQSTLVVAMSGGVDSSVVAGILCEQGYNVIGITLQLYDHGMATAKKNACCAGQDI 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDA+ V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL+   
Sbjct: 62  YDAKMVANKLGMPHYVLDYESKFKESVIDNFVDSYLRGETPLPCVQCNKSVKFRDLIKTA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGAD L TGHY+R     GD+G     +   +D  +DQSYFLFATT++QL  L FPLG
Sbjct: 122 KELGADKLVTGHYVRK--INGDNGPE---LHMGLDPLKDQSYFLFATTKEQLEYLDFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K+  R LA + GL++ADK DSQDICFV  G Y +V+ +I    +  G I+H+NG  L
Sbjct: 177 ALTKDETRKLASKFGLEVADKPDSQDICFVPDGNYKNVINKIRPNASESGKILHINGFEL 236

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H+GIINYTIGQRRGLG++  EPL+V+ +D NS+ V VGP  +L V    ++++NWL  
Sbjct: 237 GTHSGIINYTIGQRRGLGISYHEPLYVIKIDPNSNIVYVGPESALNVQEFVIKDVNWLAG 296

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            L +    +  +  VK+RS++ P    + +   D + V F   E  VA GQACV Y    
Sbjct: 297 SLKDG---EKLEVSVKVRSTRPPRLAEISKLEGDRMKVKFLSEEKAVAPGQACVIYDG-- 351

Query: 373 NEARVLGGGIISG 385
              RVLGGG I+ 
Sbjct: 352 --TRVLGGGWITR 362


>gi|205822290|sp|Q122U9|MNMA_POLSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 401

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/398 (30%), Positives = 187/398 (46%), Gaps = 42/398 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK     R+VV +SGGVDS+V A LLK+ G++VIG+ ++ +     S+    C +  D 
Sbjct: 1   MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE---YCSSNIDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +KF   L   
Sbjct: 58  VDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY R R    ++      + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 118 MRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLFPVG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K  VR +A E+GL  A K DS  ICF+ +  + D + R  A     G I +  G++L
Sbjct: 175 ELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIAKA--PGPIKNDRGRVL 232

Query: 254 GRHNGIINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSSRVIV 292
           G+H G+  YT+GQR+GLG+                        EP FV   D +++ + V
Sbjct: 233 GKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFVARKDLDTNTLWV 292

Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGV 348
                   L+   +  ++ +W+        ++       K R  Q      ++       
Sbjct: 293 VQGHDHPWLQSTVLSAQDCSWVAGTAPAAGLMA-----AKTRYRQVDATCELRSATTANC 347

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            + F + +  V  GQ+ V Y  D      LGGG+I+ S
Sbjct: 348 ELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 381


>gi|77919454|ref|YP_357269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter carbinolicus DSM 2380]
 gi|123573968|sp|Q3A3F8|MNMA_PELCD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77545537|gb|ABA89099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 352

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 211/367 (57%), Gaps = 19/367 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+  ++VAMSGGVDS+V AALL   G+ V GVT+++++    ++  G       + DAR+
Sbjct: 4   KNKHILVAMSGGVDSTVAAALLLAQGHQVSGVTMRVWD----TEPLGDGREPAHIRDARK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + +  +V D  E F   V+ PF   Y +G TP PCV CNR  KFS LL    +LGA
Sbjct: 60  VAFDLGIPLHVVDLREEFLQQVVTPFCEEYLSGRTPNPCVLCNRVFKFSRLLREADRLGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R   + G      +++ +  + ++DQSYFLF  TQQQL  + FPLG+M KE
Sbjct: 120 DALATGHYARIVEHDG-----LKVLAKGSNRQKDQSYFLFTLTQQQLQRVVFPLGEMSKE 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A  +GL +A K DSQDICF+  G Y   ++R +     EG IVH++G+ LG+H G
Sbjct: 175 EVRTHAERLGLHVAQKGDSQDICFIPDGDYIGFLERQSHATDTEGSIVHVSGKRLGKHRG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              +T+GQRRGLG+A  EPL+VV +D    +VIVG +E L V R+     NW+       
Sbjct: 235 AYRFTVGQRRGLGIAWPEPLYVVAIDAAKKQVIVGEKEHLHVDRLVTTGTNWIV-----A 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +   +IR      P   V   +D V V F++ + GV+ GQA VFY  D    RV
Sbjct: 290 QPQQPLQARCRIRYRHQEAPCTLVVLGNDRVEVRFDEPQSGVSPGQAAVFYDED----RV 345

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 346 LGGGWIA 352


>gi|194097878|ref|YP_002000923.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998356|ref|ZP_04718280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|240016919|ref|ZP_04723459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA6140]
 gi|240079741|ref|ZP_04724284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|240116431|ref|ZP_04730493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|240122374|ref|ZP_04735330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|240125108|ref|ZP_04737994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|254494442|ref|ZP_05107613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 1291]
 gi|260441652|ref|ZP_05795468.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae DGI2]
 gi|268594219|ref|ZP_06128386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|268595888|ref|ZP_06130055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|268602098|ref|ZP_06136265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|268680964|ref|ZP_06147826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|268683706|ref|ZP_06150568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|291045029|ref|ZP_06570737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae DGI2]
 gi|193933168|gb|ACF28992.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae NCCP11945]
 gi|226513482|gb|EEH62827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 1291]
 gi|268547608|gb|EEZ43026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae 35/02]
 gi|268549676|gb|EEZ44695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA19]
 gi|268586229|gb|EEZ50905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID18]
 gi|268621248|gb|EEZ53648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID332]
 gi|268623990|gb|EEZ56390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-92-679]
 gi|291011032|gb|EFE03029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae DGI2]
 gi|317163647|gb|ADV07188.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 383

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 187/383 (48%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           +++    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378


>gi|217969633|ref|YP_002354867.1| tRNA-specific 2-thiouridylase MnmA [Thauera sp. MZ1T]
 gi|217506960|gb|ACK53971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thauera sp. MZ1T]
          Length = 365

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 185/378 (48%), Gaps = 29/378 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VVV MSGGVDS+V A LLKR GY V G+ ++ +     S+    C   QD+ D   VC
Sbjct: 1   MKVVVGMSGGVDSAVTALLLKRQGYQVTGLFMKNWEDDDDSE---YCSTRQDLVDVASVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +   V ++   +++ V   F   Y AG TP P V CN  +KF   L    QLGA+ 
Sbjct: 58  DVIGIDLEVVNFSAEYKDRVFADFLHEYEAGRTPNPDVLCNSEIKFRCFLDHAMQLGAER 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R +  +DG+    + +  D  +DQSYFL+   Q+QL    FPLG + K  V
Sbjct: 118 IATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQEQLAKTMFPLGALYKREV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A E GL +A+K DS  ICF+ +  + + + R        G+I  L +G++LG H G+
Sbjct: 177 RRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--TRPGEIRALDDGRVLGEHQGL 234

Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           + +TIGQR+GL +             E  +V   D  ++ + V       +L   R+   
Sbjct: 235 MYHTIGQRKGLHIGGLKGNQDEAGEHEAWYVAGKDVKANVLYVVQGHAHPALLKDRLVAG 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQAC 365
           ++NW+         V       K R      P  + +  D    + F + +  V  GQ+ 
Sbjct: 295 DLNWIAGRDPHSHWV----YTAKPRYRTPDQPCEIDRIVDGRAEIAFAQPQWAVTPGQSV 350

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y         LGGGII
Sbjct: 351 VVY----ESKVCLGGGII 364


>gi|254451424|ref|ZP_05064861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 238]
 gi|198265830|gb|EDY90100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 238]
          Length = 379

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 196/379 (51%), Positives = 250/379 (65%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 6   PLNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV + +   HYV DYE  FR AVI  FA SY AG TP+PC+ CN  VKF 
Sbjct: 66  CAGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFK 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   + L AD +ATGHYI+ ++     G R   +    D  RDQSYFLF+T  +QL  
Sbjct: 126 DLLETAKDLDADCMATGHYIQRKM-----GARGAELHCAEDANRDQSYFLFSTKPEQLDY 180

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K++ R+LAR+ GL +ADK DSQDICFV  G Y  V++++  G A  GDIV
Sbjct: 181 LRFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGDIV 240

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
             +G +L +H G+I+YTIGQRRGLG+  + +PL+VV LD +   VIVGP+E L    + +
Sbjct: 241 DTDGSVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKEMLTTRTVPV 300

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD  F+   V      VKIRS++ P+   V+  +     ++    E GVA GQA
Sbjct: 301 REINWLGDDAFD--AVAERHISVKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQA 358

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY +DS  +R+ GGG I
Sbjct: 359 CVFYDNDS--SRIFGGGWI 375


>gi|168179339|ref|ZP_02614003.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226950335|ref|YP_002805426.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669769|gb|EDT81745.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226844215|gb|ACO86881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 353

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 205/364 (56%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V FE  +  +  GQ+ VFY  D       GGG
Sbjct: 292 PMELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDILA----GGG 347

Query: 382 IISG 385
           II G
Sbjct: 348 IIEG 351


>gi|187778511|ref|ZP_02994984.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC
           15579]
 gi|187772136|gb|EDU35938.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC
           15579]
          Length = 353

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSASEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LNIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNERKVIVKAEDDKKDQTYMMYNLKQYQLDRTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V FE  +  +  GQ+ VFY  D       GGG
Sbjct: 292 PMELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDVLA----GGG 347

Query: 382 IISG 385
           II G
Sbjct: 348 IIEG 351


>gi|306821577|ref|ZP_07455175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550322|gb|EFM38315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 371

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 192/372 (51%), Gaps = 26/372 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V++ MSGGVDSSV A +LK  GYDV G+ ++ ++ +        C A QD  D R+V
Sbjct: 5   KKKVILGMSGGVDSSVAAVILKEQGYDVTGIFMKNWDDKNDD----MCTAKQDYDDVRKV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D++ + +Y  ++E+++ + V   F   Y  G TP P V CN+ +KF   L    +L AD
Sbjct: 61  ADSLGIDYYTVNFEKQYWDEVFTYFLDEYKKGRTPNPDVMCNQEIKFKAFLDYALKLDAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY R      ++   +  + R +D  +DQ+YFL    Q+ L    FP+G+++K  
Sbjct: 121 CIAMGHYARV-----EEKDGKFYLKRAVDNNKDQTYFLSRIGQKALSKTIFPIGEIEKSK 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR++A+E  L  A K DS  ICF+ +  +   + +    ++ +GD++++ + + +G HNG
Sbjct: 176 VREIAKEHNLSTALKKDSTGICFIGERNFDTFLDKYL--LSKKGDMINVDDSKKIGSHNG 233

Query: 259 IINYTIGQRRGLGVAMGE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           +I+YT+GQR+GLG+       P FV   D   + + V      +SL    +   +  W+ 
Sbjct: 234 LIHYTLGQRKGLGIGGVGSGLPWFVAGKDIEKNILYVAQGEEHDSLYSTSLIGEQPFWI- 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               E+     +KC  K R  Q  + V V ++ + + V F+     V  GQ  VFY  D 
Sbjct: 293 ---MEEEPNFPYKCTAKFRYRQKDIAVTVHKDGENIRVVFDDKVKAVTPGQIAVFYDGD- 348

Query: 373 NEARVLGGGIIS 384
                +G  II 
Sbjct: 349 ---YCMGSAIIK 357


>gi|157825546|ref|YP_001493266.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia akari str. Hartford]
 gi|166235076|sp|A8GMY3|MNMA_RICAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157799504|gb|ABV74758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia akari str. Hartford]
          Length = 365

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/371 (48%), Positives = 237/371 (63%), Gaps = 13/371 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ 
Sbjct: 7   KHSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN +VKF DL+   R+LGA
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNNSVKFRDLIKTARELGA 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R     GD+G     +   +D  +DQSYFLF TT++QL  L FPLG   K+
Sbjct: 127 SQLATGHYVRK--VSGDNG---VELHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGWFTKD 181

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R LA + GL++A K DSQDICFV  G Y  V+  I    +  G I+H+NG  LG H+G
Sbjct: 182 ETRKLASKFGLEVAYKPDSQDICFVPDGNYKSVINTIRPNASESGKIIHINGFALGEHSG 241

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           IINYTIGQRRGLG+A  EPL+VV +D   + V VGP  +L V    ++++NWL D + ++
Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPEAALHVQEFIIKDVNWLADEIKDN 301

Query: 319 AVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +  VKIRS++ P +    +  DD + + F  +E  VA GQACV Y  +    RV
Sbjct: 302 K---KLEVAVKIRSTRPPRLAAISKLGDDKMKIRFLSAEKAVAPGQACVIYAGE----RV 354

Query: 378 LGGGIISGSKR 388
           LGGG I+   R
Sbjct: 355 LGGGWITRDIR 365


>gi|59801573|ref|YP_208285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae FA 1090]
 gi|293399659|ref|ZP_06643811.1| tRNA methyl transferase [Neisseria gonorrhoeae F62]
 gi|59718468|gb|AAW89873.1| putative tRNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|291609910|gb|EFF39033.1| tRNA methyl transferase [Neisseria gonorrhoeae F62]
          Length = 383

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 186/383 (48%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R     G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           +++    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378


>gi|240113689|ref|ZP_04728179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae MS11]
          Length = 367

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 187/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   QD 
Sbjct: 1   MNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTI 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DVDI----CLGGGIIQTTDKP 362


>gi|326561491|gb|EGE11835.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 46P47B1]
 gi|326566712|gb|EGE16851.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 103P14B1]
 gi|326571429|gb|EGE21444.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC7]
 gi|326576626|gb|EGE26533.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 101P30B1]
          Length = 392

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 201/386 (52%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F+ ++  V 
Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|317122065|ref|YP_004102068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592045|gb|ADU51341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter marianensis DSM 12885]
          Length = 405

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 197/370 (53%), Gaps = 16/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             RV+ AMSGGVDSSV+AALL+ +GY+VIGVT+Q + +  A    R G CC+   + DAR
Sbjct: 6   KGRVLAAMSGGVDSSVMAALLRDEGYEVIGVTMQTWPAMAAEDEARYGGCCSLSAIDDAR 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + + + +YV +  + F   VI  F   Y  G TP PC+ CNR +KF + L   + LG
Sbjct: 66  RVAERLGIPYYVMNMRQDFEEKVIDYFVEEYLRGRTPNPCIACNRYIKFDEFLRRAQALG 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   DD   R ++ +  D  +DQ+Y L+  TQ+QL     P+G  +K
Sbjct: 126 CDYVATGHYA---IVEYDDAAGRFVLRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFEK 182

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR LA   GL  A K +SQ+ICFV+   +   ++         G I  + G+ +G H 
Sbjct: 183 SEVRRLAEAYGLVTARKPESQEICFVKDDDHHRFLEERAGDRIQPGPIYDIRGRRIGTHR 242

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YT+GQRRGLG+    P++VV +    + +IVGP  +     +   ++NW+      
Sbjct: 243 GLAYYTVGQRRGLGIQSDRPMYVVRILPEQNALIVGPDTATYARGLRAVDVNWVS----W 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             +    +   K+R         V+     DD V V F++ +  +  GQA VFY  D   
Sbjct: 299 PGLAGEARVTAKVRYKSPEAAAVVRPVAGRDDAVEVWFDEPQRAITPGQAVVFYDGD--- 355

Query: 375 ARVLGGGIIS 384
            RV GGG+I+
Sbjct: 356 -RVAGGGVIA 364


>gi|134294775|ref|YP_001118510.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia vietnamiensis G4]
 gi|205813829|sp|A4JBM2|MNMA_BURVG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134137932|gb|ABO53675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 384

 Score =  456 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 177/380 (46%), Gaps = 32/380 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG+M K 
Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEMPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKRVGEHIG 231

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+G+G+       GEP FV   D  S+ + V        L  H +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSHELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDP------VPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           +      +   DGF C  K R  Q                +    + F+ ++  V  GQ+
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACRFGAAAAGPAGEARFTLAFDDAQWAVTPGQS 347

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  +      LGGGII 
Sbjct: 348 AVLYDGEI----CLGGGIIE 363


>gi|313902383|ref|ZP_07835786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467314|gb|EFR62825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 404

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 195/371 (52%), Gaps = 16/371 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           +  RV+ AMSGGVDSSV+AALL+  GY+VIGVT+Q +     +   R G CC+   V DA
Sbjct: 5   RKGRVLAAMSGGVDSSVMAALLRDQGYEVIGVTMQTWPAMEPEDEARYGGCCSLSAVDDA 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV + + + +YV +  + F   VI  F + Y  G TP PC+ CNR +KF + L     L
Sbjct: 65  RRVAERLGIPYYVMNMRQDFEEKVIDYFVAEYLQGRTPNPCIACNRYIKFDEFLRRAEAL 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY    +   D+   R I+ +  D  +DQ+Y L+  TQ+QL     P+G  +
Sbjct: 125 GCDYVATGHYA---IVEYDEALGRFILRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFE 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR LA   GL  A K +SQ+ICFV+   +   ++         G I    G+ +G H
Sbjct: 182 KSQVRQLAEAYGLVTARKPESQEICFVKDNDHRRFLEERAGDRIRPGPIYDTRGRRVGTH 241

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+  YT+GQRRGLG+    P++VV +    + +IVGP  +     +   E+NW+     
Sbjct: 242 RGLAYYTVGQRRGLGIQSDRPMYVVRILPEKNALIVGPDTATYARGLRAVEVNWVS---- 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +    +   ++R      P  V+      D V V FE+ +  +  GQA VFY  D  
Sbjct: 298 WPGLAGEARVTARVRYKSPEAPAVVRPLVGRQDAVEVWFEEPQRAITPGQAVVFYDGD-- 355

Query: 374 EARVLGGGIIS 384
             RV GGG+I+
Sbjct: 356 --RVAGGGVIA 364


>gi|139438964|ref|ZP_01772424.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC
           25986]
 gi|133775675|gb|EBA39495.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC
           25986]
          Length = 366

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 141/374 (37%), Positives = 207/374 (55%), Gaps = 13/374 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + RV+VAMSGGVDSSV A LLK  GY+ +G T++L          G     +D+ DA+ 
Sbjct: 2   HNKRVLVAMSGGVDSSVTAYLLKSQGYECVGATMRL-TCPAPDPTTGMSKVDRDIADAKA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + H+V D ++ F   VI  F ++Y  G TP PC+ CNR +KF  LL     +G 
Sbjct: 61  VAERLGIPHHVLDLQQTFDRNVIERFVNAYQEGLTPNPCIICNRHIKFGALLDAALDMGC 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY ++             + R  D ++DQSYFL++ TQ++L    FPL  + KE
Sbjct: 121 DYIATGHYAKTSQAAD----GTWQLHRGEDPKKDQSYFLYSLTQERLAHTIFPLAGLDKE 176

Query: 199 -SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E G   A K++S+DICF+  G Y D ++R     A  GDIV  +G ++GRHN
Sbjct: 177 RDVRRIAAEQGFTNAQKAESEDICFIPDGDYADYIERRCGHTAAPGDIVWRDGSVVGRHN 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G + YTIGQR+GLGVAM  P++V  +D  ++ V +G  E L    +   E  W       
Sbjct: 237 GALRYTIGQRKGLGVAMAHPVYVTGIDAANNTVHLGEAEDLTAVALTADEWIWSAPDARM 296

Query: 318 DAVVD--GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
           +A +D  G +   K R  Q      + R++DG + + F++ +  +A GQA V Y  D   
Sbjct: 297 EAELDAGGIRVGAKYRYRQKDQAATLTRDEDGQMLLTFDEPQRAIAPGQAVVVYRGDI-- 354

Query: 375 ARVLGGGIISGSKR 388
             VLGGG ++G+ +
Sbjct: 355 --VLGGGTVTGAIK 366


>gi|319764949|ref|YP_004128886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicycliphilus denitrificans BC]
 gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicycliphilus denitrificans BC]
          Length = 373

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 185/382 (48%), Gaps = 33/382 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  V
Sbjct: 6   KQRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 63  ADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R            + + +D  +DQSYFL    Q+QL    FP+G+++K  
Sbjct: 123 KIATGHYARVRHNPA---TGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + + + R  +     G I+   G+ LGRH G+
Sbjct: 180 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHE--PGPILDDRGRRLGRHVGL 237

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304
             YT+GQR+GLG+                P FV   +  ++  RV+ G     L  HR+ 
Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
            ++ +W+              C  K R  Q      V     G + + F +++  V  GQ
Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFSEAQWAVTPGQ 352

Query: 364 ACVFYTSDSNEARVLGGGIISG 385
           + V Y  +      LGGG+I+ 
Sbjct: 353 SAVLYDGEV----CLGGGVIAT 370


>gi|269214555|ref|ZP_05986816.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria lactamica ATCC 23970]
 gi|269209446|gb|EEZ75901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria lactamica ATCC 23970]
          Length = 367

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTSDPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVCNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPECPKAGHYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|325142740|gb|EGC65116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 961-5945]
 gi|325198666|gb|ADY94122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis G2136]
 gi|325201768|gb|ADY97222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240149]
 gi|325208488|gb|ADZ03940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis NZ-05/33]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +++   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 EGDV----CLGGGIIQSTDKP 362


>gi|296315198|ref|ZP_06865139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria polysaccharea ATCC 43768]
 gi|296837925|gb|EFH21863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria polysaccharea ATCC 43768]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTSDPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VVQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|330827143|ref|YP_004390446.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans
           K601]
 gi|329312515|gb|AEB86930.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans
           K601]
          Length = 373

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 185/382 (48%), Gaps = 33/382 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  V
Sbjct: 6   KQRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 63  ADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R            + + +D  +DQSYFL    Q+QL    FP+G+++K  
Sbjct: 123 KIATGHYARVRHNPA---TGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + + + R  +     G I+   G+ LGRH G+
Sbjct: 180 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHE--PGPILDDRGRRLGRHVGL 237

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304
             YT+GQR+GLG+                P FV   +  ++  RV+ G     L  HR+ 
Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
            ++ +W+              C  K R  Q      V     G + + F +++  V  GQ
Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFPEAQWAVTPGQ 352

Query: 364 ACVFYTSDSNEARVLGGGIISG 385
           + V Y  +      LGGG+I+ 
Sbjct: 353 SAVLYDGEV----CLGGGVIAT 370


>gi|89902516|ref|YP_524987.1| tRNA-specific 2-thiouridylase MnmA [Rhodoferax ferrireducens T118]
 gi|122478272|sp|Q21RZ7|MNMA_RHOFD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89347253|gb|ABD71456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodoferax ferrireducens T118]
          Length = 384

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 183/398 (45%), Gaps = 40/398 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K     RVVV +SGGVDS+V A LLK+ GY+VIG+ ++ +     S+    C +  D 
Sbjct: 1   MNKRHSGQRVVVGLSGGVDSAVTAWLLKQQGYEVIGIFMKNWEDDDDSE---YCSSNVDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +KF   L   
Sbjct: 58  IDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDD----------GKRRRIMCRPMDLERDQSYFLFATTQQ 183
            +LGA  +ATGHY R R    D              R  + + +D  +DQSYFL    Q 
Sbjct: 118 LRLGAQKIATGHYARVRCVAADGRVLDAAQAQMSDGRFELLKGLDPSKDQSYFLHRLNQA 177

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL    FP+G++ K  VR LA E+GL  A K DS  ICF+ +  + D + R  A     G
Sbjct: 178 QLSKTLFPVGELLKTEVRRLALEIGLPNAKKKDSTGICFIGERPFRDFLNRYIARE--PG 235

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVI 291
            I    G+ +G+H G+  YT+GQR+GLG+                P FV   D  ++ + 
Sbjct: 236 PIKDDKGRTIGQHVGLSFYTLGQRQGLGIGGLKAKGAQRGGGEHAPWFVARKDLATNTLW 295

Query: 292 VGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348
           V        L+ H +  ++ +W+     +       +   K R  Q   P  +       
Sbjct: 296 VVQGHEHPWLQSHGLSAQDASWVAGTAPQAG-----RFSAKTRYRQLDAPCTLAAGAGAA 350

Query: 349 -YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            ++ F + +  V  GQ+ V Y  +      LGGG+I+ 
Sbjct: 351 FHLSFPEPQWAVTPGQSAVLYDDEV----CLGGGVIAA 384


>gi|315146247|gb|EFT90263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4244]
          Length = 374

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 183/370 (49%), Gaps = 26/370 (7%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
            A LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D I + +Y  ++E+ 
Sbjct: 22  TALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKE 78

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           + + V   F + Y  G TP P V CN+ +KF   L    QLGAD +ATGHY +    V  
Sbjct: 79  YWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VET 134

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           D      M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR +A   GL  A K 
Sbjct: 135 DENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIADRAGLATAKKK 194

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI----GQRRGLG 271
           DS  +CF+ +  + + +       A +G++V  +G+I G+H+G++ YTI    G   G G
Sbjct: 195 DSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGG 252

Query: 272 VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFV 328
               EP FV+  D  ++ + VG     E L    +   E+++  D      +   F C  
Sbjct: 253 GKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDT----PMPKEFDCTA 308

Query: 329 KIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           K R  Q  +PV V  ++DG    V F++    V  GQA VFY         LGGG+I  +
Sbjct: 309 KFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDG----MECLGGGLIDRA 364

Query: 387 KRSDAVEESL 396
            + +   + +
Sbjct: 365 YQDEKELQYV 374


>gi|240127089|ref|ZP_04739750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268685447|ref|ZP_06152309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268625731|gb|EEZ58131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae SK-93-1035]
          Length = 383

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 187/383 (48%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLFKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           +++    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378


>gi|329890336|ref|ZP_08268679.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brevundimonas diminuta ATCC 11568]
 gi|328845637|gb|EGF95201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brevundimonas diminuta ATCC 11568]
          Length = 410

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 204/371 (54%), Positives = 258/371 (69%), Gaps = 7/371 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+  +A K+KG+CCAGQD++DAR
Sbjct: 42  PQGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGEALKKKGACCAGQDIHDAR 101

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              D I + HYV DYE RF++AVI  FA SY  G+TP+PC+ CN+TVKF DLL V R LG
Sbjct: 102 LAADLIGIPHYVLDYENRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 161

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY+R   +       R  M + +D  RDQSYFLFATTQ QL  LRFPL D++K
Sbjct: 162 AEAMATGHYVRRATH-----GNRSQMRKAVDHSRDQSYFLFATTQDQLDYLRFPLADLEK 216

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A  +GL IA K DSQDICFV  G Y  ++ R+       GDIVH++G++LGRH+
Sbjct: 217 PQVRGVAASLGLRIAAKPDSQDICFVPTGDYRTLIDRLRPQGREAGDIVHMDGRVLGRHS 276

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           GI +YTIGQRRGL VA+GEPLFVV LD +  RVIVGPRE+L   R+ L E NWLGD    
Sbjct: 277 GITDYTIGQRRGLNVAVGEPLFVVKLDPDHRRVIVGPREALLTARLTLEETNWLGDQATI 336

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E+A  DG     ++RS++ P P  +   D  V V F++ E GVA GQACV Y   +++ R
Sbjct: 337 EEAARDGAPVLARVRSTRQPSPARLALVDGAVQVVFDQGEEGVAPGQACVLYDP-ADDER 395

Query: 377 VLGGGIISGSK 387
           V+GGG I  ++
Sbjct: 396 VMGGGFIHSTE 406


>gi|15604175|ref|NP_220690.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia prowazekii str.
           Madrid E]
 gi|6226259|sp|Q9ZDM1|MNMA_RICPR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3860867|emb|CAA14767.1| unknown [Rickettsia prowazekii]
 gi|292571906|gb|ADE29821.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia prowazekii Rp22]
          Length = 358

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/364 (49%), Positives = 235/364 (64%), Gaps = 13/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VVAMSGGVDSS VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ V + 
Sbjct: 4   IVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDYGIAVGKKNACCAGQDIYDAKMVANK 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV DYE +F+ +VI  F  SY  GETPLPCV CN++VKF DL++  ++LGAD LA
Sbjct: 64  LGIPHYVLDYENKFKESVIDNFVDSYLHGETPLPCVQCNKSVKFRDLINTAKELGADKLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R       +G     +   +D  +DQSYFLF  T++QL  L FPLG   K   R 
Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDTTKDQSYFLFTITREQLEYLSFPLGGFTKYETRK 178

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + GLDIADK DSQDICFV  G Y  V+ +I       G IVH+NG  LG H+GIINY
Sbjct: 179 LASKFGLDIADKPDSQDICFVPDGNYKTVINKIRPEANTSGKIVHINGFELGEHSGIINY 238

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+A  EPL+VV +D +++ V VG   +L VH   ++++NWL D + +    +
Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDH---E 295

Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VKIRS++ P    + +  +D + V F   E  VA GQACV Y  +    RVLGGG
Sbjct: 296 KLAVDVKIRSTRPPCHAEISKLCNDRIKVKFLSKEKAVAPGQACVIYAGE----RVLGGG 351

Query: 382 IISG 385
            I+ 
Sbjct: 352 WITS 355


>gi|74316869|ref|YP_314609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
 gi|123612137|sp|Q3SKH7|MNMA_THIDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|74056364|gb|AAZ96804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 358

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 178/372 (47%), Gaps = 26/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDS+V A LLK+ GYDV+GV ++ ++    ++    C A QD  D   V 
Sbjct: 3   TRVVVGLSGGVDSAVAAYLLKQQGYDVLGVFMKNWDDDDNTEH---CTARQDFLDVLAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +     ++   ++  V   F + Y AG TP P V CN  +KF   L      GAD 
Sbjct: 60  DVLGIEVEAVNFAAEYKERVFSYFLAEYQAGRTPNPDVLCNAEIKFKAFLDDAIARGADY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+      G D   R  + R  D  +DQSYFL+   Q QL    FPL  + K  V
Sbjct: 120 IATGHYVGK----GHDTFGRAALLRARDANKDQSYFLYRLNQAQLSPALFPLARLPKPEV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++AR +GL  A K DS  ICF+ +  + + ++R        GD+    G+++G+H G++
Sbjct: 176 REIARRIGLPNAAKKDSTGICFIGERNFREFLERYLPRD--PGDMTTPEGRVVGQHQGLM 233

Query: 261 NYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+     G       P FV   D  ++ ++V        L+   +   +++W+ 
Sbjct: 234 YYTLGQRQGLGIGGQKGGSDAPWFVAAKDMATNTLVVVQGHDHPLLQRFGVGAGQLSWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
               +           K R  Q      +    DD + + F+  +  V  GQ+ V Y  D
Sbjct: 294 GVAPDPERP----YTAKTRYRQTDAACHITTLYDDTLELVFDAPQWAVTPGQSVVLYDGD 349

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 350 V----CLGGGII 357


>gi|169350064|ref|ZP_02867002.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552]
 gi|169293277|gb|EDS75410.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552]
          Length = 387

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/389 (33%), Positives = 197/389 (50%), Gaps = 27/389 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            RVV+ +SGGVDS+V A LLK+ GY+VIGV ++ ++S+  +   G+       C   QD 
Sbjct: 13  KRVVLGLSGGVDSAVAAYLLKKQGYEVIGVFMRNWDSQLNNDILGNPTNDNDICPQEQDY 72

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   + +     D+ + + + V   F   Y  G TP P + CN+ +KF   L+  
Sbjct: 73  NDAKAVAKCLGIEIKRVDFIKEYWDNVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLNYA 132

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + L AD +ATGHY R       D     IM + +D  +DQ+YFL    QQQL +  FPLG
Sbjct: 133 KTLNADYIATGHYARVVHSENKD----SIMLKGIDNNKDQTYFLCQLNQQQLQNSLFPLG 188

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           ++ K+ VR LA E+ L +ADK DS  ICF+ +  + + ++      A  G +V +  G I
Sbjct: 189 EIDKKEVRRLAHELQLPVADKKDSTGICFIGERDFKEFLQNYIP--AQSGKMVDIETGDI 246

Query: 253 LGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           +G H+GI+ YTIGQR+       G   FVV  D + + + V     ++ L      + ++
Sbjct: 247 IGEHSGIMYYTIGQRKGLGIGGPGGAWFVVGKDYDKNVLYVCQGDQKDWLYSSGALISDV 306

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
           NW+      +   +   C  K R  Q   P+ ++  ++D VY+ F+K    V  GQA VF
Sbjct: 307 NWIA----SNKPTEKISCNAKFRYRQADNPIKLEFIDEDKVYLTFDKPVKAVTPGQAAVF 362

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y  D      LGGG I    +     E L
Sbjct: 363 YDGDI----CLGGGTIETVYKDGKPIEYL 387


>gi|153939777|ref|YP_001392187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|205810589|sp|A7GHC7|MNMA2_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|152935673|gb|ABS41171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|295320186|gb|ADG00564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. 230613]
          Length = 353

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 205/364 (56%), Gaps = 19/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F+N VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKNNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D       GGG
Sbjct: 292 PMELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDILA----GGG 347

Query: 382 IISG 385
           II G
Sbjct: 348 IIEG 351


>gi|149926700|ref|ZP_01914960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Limnobacter sp. MED105]
 gi|149824629|gb|EDM83845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Limnobacter sp. MED105]
          Length = 358

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 184/373 (49%), Gaps = 26/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VV+ MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C + QD  DA  V 
Sbjct: 3   KTVVIGMSGGVDSSVSAWLLKQQGYNVIGLFMKNWEDDDDSE---YCSSRQDWLDAASVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V     ++   +++ V   F S Y+AG TP P + CN  +KF   L     LGAD 
Sbjct: 60  DVVGVDIEAVNFASEYKDRVFSVFLSEYSAGRTPNPDILCNSEIKFKAFLDHAYSLGADY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R   G+       + + +D  +DQSYFL    Q QL    FPLG+++K  V
Sbjct: 120 IATGHYARVRELNGE-----FQLLKAVDHSKDQSYFLHRLNQAQLSKTLFPLGEIQKTEV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E+GL  A K DS  ICF+ +  + + + R        G I++  GQ +G H G+ 
Sbjct: 175 RKIALELGLANATKKDSTGICFIGERPFREFLNRYLPTA--PGPILNDEGQQIGEHVGLS 232

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+G+G+       GEP FV   D  ++ + V        L    +   + +++ 
Sbjct: 233 FYTLGQRKGIGIGGQKEGNGEPWFVARKDLQNNTLYVVQGHDHPWLHQKVLVAEQAHYIS 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                D       C    R  Q+      +  + G  ++F +S+  V  GQ+ V Y  D 
Sbjct: 293 GHAPSDP--QHMACKA--RYRQEDSSCDFKLTEQGFELNFAESQFAVTPGQSAVLYRGDV 348

Query: 373 NEARVLGGGIISG 385
                LGGG+I+ 
Sbjct: 349 ----CLGGGVIAS 357


>gi|160944760|ref|ZP_02091987.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443944|gb|EDP20948.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii
           M21/2]
          Length = 367

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 206/376 (54%), Gaps = 13/376 (3%)

Query: 15  DKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQD 72
            +NP +  R ++AMSGGVDSSV A L+++ GYD  G+T++L +N         +CC+ +D
Sbjct: 3   TQNPANRPRALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKD 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  V   +++ + V D+   FR  +I  F   Y AG TP PC+DCN+ +KF  LL  
Sbjct: 63  IEDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDW 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G + + TGHY R      D    R ++ + +D  +DQSY L+  TQ+QL  +R PL
Sbjct: 123 AEEHGMEYVVTGHYARVE---QDAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPL 179

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G + K  VR++A+E     A K DSQDICFV  G Y   +++        GD +  +G++
Sbjct: 180 GALHKTEVREIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKV 239

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H+G + YT+GQR+GLG+A+G P++V   D  ++ V VGP   L    +Y  ++NW+ 
Sbjct: 240 VGTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDSIVYAEDVNWIA 299

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 A+    +   + R  Q      V   ++G  ++F++ +     GQA V Y  D 
Sbjct: 300 I----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV 355

Query: 373 NEARVLGGGIISGSKR 388
               VLGGG I+  ++
Sbjct: 356 ----VLGGGTITRVEK 367


>gi|225077158|ref|ZP_03720357.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens
           NRL30031/H210]
 gi|224951506|gb|EEG32715.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens
           NRL30031/H210]
          Length = 367

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD 
Sbjct: 1   MNTTNTPTNIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++
Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTQSLIMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +       +   +G +   K R      P  ++  +D+ + + F++ +  V  GQ+ V Y
Sbjct: 291 FT----LPERPTEG-RYTCKTRYRMADAPCTLRYLDDENIELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDV----CLGGGIIMSTDKP 362


>gi|289450037|ref|YP_003475194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184584|gb|ADC91009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 380

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 146/381 (38%), Positives = 202/381 (53%), Gaps = 13/381 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDAR 77
              +V+VAMSGGVDSSV A LL   GYDV G T+Q++ N R+ +     CC+   V DAR
Sbjct: 2   SKGKVLVAMSGGVDSSVAAKLLVDHGYDVTGATMQIWQNEREENHCDRGCCSLSAVEDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   I + +YV ++++ FR  VI PF  +Y  GETP PC+ CNR +KF + L     +G
Sbjct: 62  RVAAKIGIPYYVLNFKDDFRKQVIAPFVDAYWQGETPNPCILCNRHIKFEEFLQKALMMG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY R    V +    R  +       +DQ+Y L+  TQQQL  L  PLGD+ K
Sbjct: 122 FDHIATGHYGR---VVYNQATGRYALALSATTAKDQTYALYTLTQQQLSHLLLPLGDLVK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR++A E GL +A+K DSQ+ICFV    Y   V+  +A  +  G+ +  +G +LGRH 
Sbjct: 179 ERVREIALEAGLPVANKRDSQEICFVTDNNYARFVEEFSARTSRPGNFILSDGTVLGRHR 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+I+YTIGQR+GLG+A   PLFV  L  +++ VI+   E L    +      W       
Sbjct: 239 GLIHYTIGQRKGLGIAYKHPLFVKALRMDTNEVILAADEDLYATALIANNPVWSA----W 294

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             + +      KIR      P  +    DD V + F + +  +  GQA V Y  D     
Sbjct: 295 PKLSEPLSVKAKIRYRATAAPATLYPLADDQVGLIFAEPQRAITPGQAVVCYKDD----L 350

Query: 377 VLGGGIISGSKRSDAVEESLL 397
           VLGG  I      D + +   
Sbjct: 351 VLGGATIMRGATDDEILKGAK 371


>gi|322807224|emb|CBZ04798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 353

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 207/363 (57%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       +G+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  R++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V FE  +  +  GQ+ VFY  D     ++GGG
Sbjct: 292 SMELEAKVRYSAKPSKATIIPLENNKVKVVFESKQRAITKGQSVVFYDKD----MLVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|163857039|ref|YP_001631337.1| tRNA-specific 2-thiouridylase MnmA [Bordetella petrii DSM 12804]
 gi|205811276|sp|A9IQK6|MNMA_BORPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163260767|emb|CAP43069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella petrii]
          Length = 376

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 184/380 (48%), Gaps = 29/380 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ +     S+    C   QD+ DA  
Sbjct: 12  KGRRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDLLDAAS 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA
Sbjct: 69  VADLVGVDFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGA 128

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R   G  G R   + + +D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 129 EHIATGHYARVRAIAGAHG-REYQLLKALDGSKDQSYFLHRLNQAQLSRTLFPLGEIHKT 187

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ +  + + + R        GDI+   GQ +GRH+G
Sbjct: 188 EVRRIAHDIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGDILTPQGQRVGRHHG 245

Query: 259 IINYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           +  YT+GQR+GLGV             +  +V   D   + + V        L  +R+  
Sbjct: 246 LSFYTLGQRKGLGVGGVKGSQRDDGTADAWYVARKDLQHNILYVVQGHDHPWLLSNRLQA 305

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQA 364
            + +W+     E           K R  Q      +++   G   + F + +  V  GQ+
Sbjct: 306 LDASWVAGRAPELRGYG-----AKTRYRQADAACVLEQASQGAFELSFSQPQWAVTPGQS 360

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D      LGGGII+
Sbjct: 361 AVLYDGDV----CLGGGIIA 376


>gi|326319478|ref|YP_004237150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376314|gb|ADX48583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 403

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/411 (29%), Positives = 187/411 (45%), Gaps = 53/411 (12%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D 
Sbjct: 1   MTASPKQ-RIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L   
Sbjct: 57  VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDG----------------------KRRRIMCRPMDLER 171
            ++GA+ +ATGHY R R    D G                        R  + + +D  +
Sbjct: 117 MRVGAEKIATGHYARVRRVAADPGAMSGRHDRMESHATACDSAQDPHWRYELLKGLDPAK 176

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231
           DQSYFL    Q QL    FP+G+++K  VR +A E+GL  A K DS  ICF+ +  + + 
Sbjct: 177 DQSYFLHRLNQAQLSRTLFPVGELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREF 236

Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLF 279
           + R        G I+   G+ LG+H G+  YT+GQR+GLG+                P F
Sbjct: 237 LNRYIQHA--PGPILDDRGRKLGQHVGLSFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWF 294

Query: 280 VVYLDKNSS--RVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           V   +   +  RV+ G     L  H +   + +W+              C  K R  Q  
Sbjct: 295 VARKEVERNVLRVVQGHDHPWLLSHTLQATDASWVAGRPPAAGA-----CAAKTRYRQQD 349

Query: 337 VPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
               V   + G   + F +++  V  GQ+ V Y  +      LGGG+I+ +
Sbjct: 350 AACTVTPAEGGDFALAFPEAQWAVTPGQSAVLYDGEV----CLGGGVITAA 396


>gi|209364013|ref|YP_001424605.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii Dugway
           5J108-111]
 gi|207081946|gb|ABS77207.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 371

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 187/384 (48%), Gaps = 27/384 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
             +  +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C 
Sbjct: 5   FYTTQMPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCT 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A QD+ DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  
Sbjct: 62  AEQDLSDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKS 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL + 
Sbjct: 122 LLDHAKKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G  +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I   
Sbjct: 177 VFPIGGYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETP 234

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEV 300
            G+I+G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L  
Sbjct: 235 EGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYS 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359
             +    ++W+ D            C  K R  Q      V R D D  +V FE  +  +
Sbjct: 295 QELTCTNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAI 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQ+ VFY  +      LGGGII
Sbjct: 351 TRGQSVVFYLGN----ECLGGGII 370


>gi|261363616|ref|ZP_05976499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria mucosa ATCC 25996]
 gi|288568144|gb|EFC89704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria mucosa ATCC 25996]
          Length = 367

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 192/383 (50%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +D+ + P +  ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 1   MDITQQPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAIEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LGD++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +++      ++      +   K R      P  ++  +D+ V + F++ +  V  GQ+ V
Sbjct: 289 LSFTLPERPKEG-----RYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362


>gi|212218582|ref|YP_002305369.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuK_Q154]
 gi|259495827|sp|B6J7H5|MNMA_COXB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|212012844|gb|ACJ20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii CbuK_Q154]
          Length = 371

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 187/384 (48%), Gaps = 27/384 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
             +  +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C 
Sbjct: 5   FYTTQMPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCT 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A QD+ DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  
Sbjct: 62  AEQDLSDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKS 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL + 
Sbjct: 122 LLDHAKKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G  +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I   
Sbjct: 177 VFPIGGYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETP 234

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEV 300
            G+I+G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L  
Sbjct: 235 EGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYS 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359
             +    ++W+ D            C  K R  Q      + R D D  +V FE  +  +
Sbjct: 295 QELTCTNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAI 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQ+ VFY  +      LGGGII
Sbjct: 351 TRGQSVVFYLGN----ECLGGGII 370


>gi|71658016|sp|Q5F7G4|MNMA_NEIG1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 185/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   QD 
Sbjct: 1   MNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R     G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTI 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DVDI----CLGGGIIQTTDKP 362


>gi|219849660|ref|YP_002464093.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aggregans DSM
           9485]
 gi|254811448|sp|B8G5F1|MNMA_CHLAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219543919|gb|ACL25657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus aggregans DSM 9485]
          Length = 359

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/364 (41%), Positives = 212/364 (58%), Gaps = 13/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSS+ AALL+  G+ V GVT+ L++  +   R+  CCA +    ARRVC  
Sbjct: 4   VLVAMSGGVDSSLAAALLQEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAATSARRVCAL 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  YVF+Y+  FR  VI  F  +Y  G TP PCV+CNR +KF  LL   R LG D +A
Sbjct: 64  LGIPFYVFNYQREFRRHVIEYFIRAYTHGLTPNPCVECNRMIKFRALLDRARALGFDAVA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    +  D   R  + R +D E+DQSY L    Q  L  L FP+G+  K+ VR+
Sbjct: 124 TGHYAR----IVRDDCGRYQLWRAVDTEKDQSYMLHMLGQADLARLLFPIGEYTKQQVRE 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A    L  A++ +SQDICFV  G Y ++++       + G IV L G+ +GRH G+  Y
Sbjct: 180 MAAARCLPSANREESQDICFVPDGDYRNLLRIEAPESLIPGPIVDLEGREIGRHRGLPLY 239

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQRRGLG+  GEP +VV +D   + +IVGP E+L   R  + +  W+ D        +
Sbjct: 240 TVGQRRGLGLGGGEPRYVVAIDPARNALIVGPVEALNRERFIVTDARWVDDA----PPAE 295

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            F C V++R+  +P+P  V    DG + V+ E+ +  V+ GQA VFY       RVLGGG
Sbjct: 296 TFHCQVQVRAHAEPLPARVSAQPDGRWLVELERPQRAVSPGQAAVFYDG----VRVLGGG 351

Query: 382 IISG 385
            I+ 
Sbjct: 352 WIAR 355


>gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 369

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 196/371 (52%), Gaps = 24/371 (6%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDSSV A LLK++GYDV G+ ++ ++    +   G C A  D  DA +VC+ I +
Sbjct: 14  GVSGGVDSSVAALLLKKEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
            +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + LGAD LATGH
Sbjct: 71  PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R      D  +    M R +D  +DQ+YFL   +Q Q+ D+ FP+GD+ K+ VR +A+
Sbjct: 131 YARV-----DRSEGETKMLRGLDSNKDQTYFLSQLSQDQIKDVLFPVGDLDKKEVRKIAK 185

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E  L  ADK DS  ICF+ +  + + +       A EG+IV  +G I+G+H G++ +TIG
Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLSNYLP--AKEGNIVDTDGNIMGKHYGLMYHTIG 243

Query: 266 QRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGLG+   GE  FV   D   + +IV      E L  +R+    ++ +     +  + 
Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSIS----KKGLK 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
             F C  K R  Q  +   V+  DDG V + ++K+   V  GQA VFY  +      LG 
Sbjct: 300 KEFDCTCKFRYRQKDINSHVKILDDGRVEITYDKT-KAVTPGQAAVFYDGEV----CLGS 354

Query: 381 GIISGSKRSDA 391
            II      + 
Sbjct: 355 CIIDEVYNGEK 365


>gi|254294555|ref|YP_003060578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hirschia baltica ATCC 49814]
 gi|254043086|gb|ACT59881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hirschia baltica ATCC 49814]
          Length = 409

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 197/378 (52%), Positives = 260/378 (68%), Gaps = 6/378 (1%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  DK   + RVV AMSGGVDS+VVAALL   GYDV+GVTLQLY+   A K++G+CCAGQ
Sbjct: 31  LGFDKPRSETRVVAAMSGGVDSTVVAALLHHAGYDVVGVTLQLYDHGAALKKQGACCAGQ 90

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D++DARR CD + + HYV DYE RF+  V+  FA +Y AG TP+PCV CN+TVKF DLL 
Sbjct: 91  DIHDARRACDALGIPHYVLDYESRFKEQVMEDFADTYLAGSTPIPCVRCNQTVKFRDLLE 150

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++ LGAD +ATGHYIR    VG++G     + R  D ++DQSYFLFATT +QL  LRFP
Sbjct: 151 TSKDLGADCMATGHYIRR--VVGENGPE---LARAADPDKDQSYFLFATTHEQLDYLRFP 205

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG M KES R +A  +GL++A K DSQDICFV  GKY  +V+++  G   +G+IVH++G+
Sbjct: 206 LGGMNKESTRKVASALGLEVASKPDSQDICFVPDGKYTAIVEKLRPGSGRKGEIVHMDGR 265

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H G+I YT+GQRRGLGVA GEP++VV +D    +VIVGPRE+LE   + + E NWL
Sbjct: 266 VLGEHEGVIKYTVGQRRGLGVATGEPIYVVKIDAGKRQVIVGPREALETRGLSMGESNWL 325

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G    E+A         ++RS++ P    +   +      FE +E GVA GQACV Y++ 
Sbjct: 326 GANSLEEACASNTPALARVRSTRPPKAGHMAMINGQPGFMFEDAEEGVAPGQACVLYST- 384

Query: 372 SNEARVLGGGIISGSKRS 389
            + +RVLGGG I+G+  +
Sbjct: 385 GDASRVLGGGFITGTVSA 402


>gi|253700862|ref|YP_003022051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
 gi|251775712|gb|ACT18293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
          Length = 359

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/372 (40%), Positives = 208/372 (55%), Gaps = 16/372 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQD 72
           +       R++VAMSGGVDSSV AALLK  G+DVIGV+LQLY   +++   G +CC+  D
Sbjct: 1   MSDKSLKKRILVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPESTPSGGKTCCSLTD 60

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DA RV   + +   V D  ERF+  VI  F + YAAG TP PC  CN  +KF  LL +
Sbjct: 61  VMDAARVAKRLGIPFEVVDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLEM 120

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           T   G D+LATGHY R    +  D +    + + +D  +DQSYFLF   Q+QL  + FP+
Sbjct: 121 TASFGTDLLATGHYAR----IEQDSEGIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR+ A    L +A K +SQ+ICF+    Y   ++         GDIV  +G  
Sbjct: 177 GNLEKRVVREHAARFNLPVAQKQESQEICFIPDNDYVRFLEEAGVKPEA-GDIVDGSGNK 235

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H GI  YT+GQRRGLG+A  EPL+V  ++  +SRV+VGP E L+   +   E+ W  
Sbjct: 236 LGSHVGIHKYTVGQRRGLGIAWKEPLYVTAINGATSRVVVGPEEDLKTGGLVAGELTWTD 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  +   F     IR    PVP   +  ++G + V+FE  +  V  GQA V Y  D
Sbjct: 296 -----KPISGTFNGSCSIRYRMKPVPCSARLIEEGSIQVEFETPQRAVTPGQAVVLYQGD 350

Query: 372 SNEARVLGGGII 383
               +V+GGG I
Sbjct: 351 ----KVVGGGWI 358


>gi|254419496|ref|ZP_05033220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas sp. BAL3]
 gi|196185673|gb|EDX80649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas sp. BAL3]
          Length = 400

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/370 (53%), Positives = 248/370 (67%), Gaps = 7/370 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+   A K+KG+CCAGQD++DAR
Sbjct: 32  PVGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 91

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RF++AVI  FA SY  G+TP+PC+ CN+TVKF DLL V R LG
Sbjct: 92  LAAEMIGIPHYVLDYESRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 151

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY+R           R  M + +D  RDQSYFLFATTQ QL  LRFPL D++K
Sbjct: 152 AEAMATGHYVRRAAV-----GNRSQMRKAIDHSRDQSYFLFATTQDQLDYLRFPLADLEK 206

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E+GL IA K DSQDICFV  G Y  ++ R+       G+IVH++G++LG H 
Sbjct: 207 PQVRGVAAELGLKIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGTHA 266

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YTIGQRRGL VA+GEPLFVV L+  + RVIVGPRE+L    + L E NWLGD    
Sbjct: 267 GITDYTIGQRRGLNVAVGEPLFVVKLEPETRRVIVGPREALLTASLTLEETNWLGDEATI 326

Query: 318 -DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +A         ++RS++ P P  +   DD V V F++ E GVA GQAC  Y  D +  R
Sbjct: 327 MEAAQANLPVLARVRSTRPPSPARLILIDDQVCVVFDEGEEGVAPGQACALYDPD-DPDR 385

Query: 377 VLGGGIISGS 386
           VLGGG I  +
Sbjct: 386 VLGGGFIRDT 395


>gi|320160878|ref|YP_004174102.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerolinea thermophila UNI-1]
 gi|319994731|dbj|BAJ63502.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerolinea thermophila UNI-1]
          Length = 361

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 199/368 (54%), Gaps = 14/368 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D  VVVAMSGGVDSSV AALL   GY VIG+ L+L+ S +  + +  CC    +  ARR
Sbjct: 4   RDETVVVAMSGGVDSSVAAALLVEQGYRVIGMMLRLW-SEEGKEDQNRCCTPDAMALARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + +  Y  D  E+F+  V+  F   YA+G TP PC+ CNR +++  L    + LGA
Sbjct: 63  VAAKLGIPFYAVDVREKFKEVVVSHFLEGYASGITPNPCLKCNRYIRWGVLHEYAQSLGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY R R            + R +D+E+DQSY L    Q+QL    FP+G+  K 
Sbjct: 123 TWFATGHYARLRRL----ESGEVQLLRGVDVEKDQSYVLSVLPQEQLRHTFFPVGEYHKP 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+LAR  GL +A+++DSQD+CF+  G Y D + R    ++  G IV+  G+ILG H G
Sbjct: 179 EVRELARRFGLPVANRADSQDLCFLAGGDYRDFLSRHAPEVSRPGVIVNRQGEILGEHQG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YTIGQR+GLG+A   PL+V+  D   +R++VG    L    +    +NW+       
Sbjct: 239 LAFYTIGQRKGLGIAFPRPLYVLEKDVVRNRLVVGEEHELGRSTLIAERVNWISG----Q 294

Query: 319 AVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             V   +  VKIR    +   V +    D V V+F+     +  GQ CVFY  +      
Sbjct: 295 PPVSSIQVEVKIRYKAREAHGVVIPLTPDRVKVEFDHPLRDITPGQQCVFYQGEI----C 350

Query: 378 LGGGIISG 385
           LGGG IS 
Sbjct: 351 LGGGTIST 358


>gi|212212452|ref|YP_002303388.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuG_Q212]
 gi|215919120|ref|NP_820145.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 493]
 gi|259495828|sp|B6IZW5|MNMA_COXB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|206584005|gb|AAO90659.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 493]
 gi|212010862|gb|ACJ18243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii CbuG_Q212]
          Length = 371

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 187/384 (48%), Gaps = 27/384 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
             +  +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C 
Sbjct: 5   FYTTQMPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCT 61

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A QD+ DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  
Sbjct: 62  AEQDLSDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKS 121

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL   ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL + 
Sbjct: 122 LLDHAKKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G  +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I   
Sbjct: 177 VFPIGGYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETS 234

Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEV 300
            G+I+G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L  
Sbjct: 235 EGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYS 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359
             +    ++W+ D            C  K R  Q      V R D D  +V FE  +  +
Sbjct: 295 QELTCTNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAI 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQ+ VFY  +      LGGGII
Sbjct: 351 TRGQSVVFYLGN----ECLGGGII 370


>gi|225024394|ref|ZP_03713586.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC
           23834]
 gi|224942775|gb|EEG23984.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC
           23834]
          Length = 368

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 191/378 (50%), Gaps = 24/378 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P    ++V +SGGVDSSV A LLK+ G+ V GV +Q +      +    C   QD +DA 
Sbjct: 2   PTPQNIIVGLSGGVDSSVTAHLLKQQGHQVRGVFMQNWEDDDNDE---YCSIKQDSFDAI 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D I +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L    + G
Sbjct: 59  AVADIIGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVEQG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY R  ++ G     +  + + +D  +DQSYFL+     QL    FPLG ++K
Sbjct: 119 AEAIATGHYARKEVHSG-----KHYLLKGLDANKDQSYFLYRLQPHQLERALFPLGHLEK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E GL  A K DS  ICF+ +  + + +++       EGD+V   G+++G+H 
Sbjct: 174 PEVRRIAAEAGLPTAAKKDSTGICFIGERPFREFLQKYL--STCEGDMVTPEGKVVGKHI 231

Query: 258 GIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           G++ YT+GQR+GLG+   GEP FV   D  ++R+IV        L    + + +++W   
Sbjct: 232 GLMFYTLGQRKGLGIGGAGEPWFVAGKDLAANRLIVVQGHQHPMLFSGSLTMSQLSWTLP 291

Query: 314 GLFEDA----VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
               +A      +G +   K R      P  ++   DD   + F+  +  V  GQ+ V Y
Sbjct: 292 ENPGEAHGSRPPEG-RYTCKTRYRMADAPCQLRYLGDDSAELVFDAPQWAVTPGQSAVLY 350

Query: 369 TSDSNEARVLGGGIISGS 386
             D      LGGGII  +
Sbjct: 351 DGDV----CLGGGIIDQA 364


>gi|170755772|ref|YP_001782543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
 gi|205810298|sp|B1ILH4|MNMA1_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|169120984|gb|ACA44820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
          Length = 353

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CNRT+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNRTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDYIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKKGNIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  R++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     ++GGG
Sbjct: 292 SMELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKD----MLVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|255066218|ref|ZP_05318073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sicca ATCC 29256]
 gi|255049428|gb|EET44892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sicca ATCC 29256]
          Length = 367

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 193/383 (50%), Gaps = 26/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +D+ + P +  ++V +SGGVDSSV AALLK++GY V GV +Q +      +    C   Q
Sbjct: 1   MDITQQPSN--IIVGLSGGVDSSVTAALLKQEGYQVRGVFMQNWEDDDNDE---YCSIKQ 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 56  DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 116 YAIEQGADTIATGHYARKEVRNGT-----HYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LGD++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 288

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +++      ++      +   K R      P  ++  +D+ V + F++ +  V  GQ+ V
Sbjct: 289 LSFTLPERPKEG-----RYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAV 343

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362


>gi|326561065|gb|EGE11430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 7169]
          Length = 392

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 RQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F  ++  V 
Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|299138824|ref|ZP_07032001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598978|gb|EFI55139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX8]
          Length = 375

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 152/385 (39%), Positives = 219/385 (56%), Gaps = 24/385 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAG 70
           P +  + VAMSGGVDSS VAALL  +G D+IG+TLQL+N              +G CC+ 
Sbjct: 2   PLNNTIAVAMSGGVDSSAVAALLHAEGRDLIGLTLQLWNQRRLAGREGMPETVQGRCCSI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            DVYDARRV + I + +Y+ + +ERF N V+ PF   Y AG TP+PC  CN  +KF  LL
Sbjct: 62  DDVYDARRVAEQIGIPYYLVNAQERFENEVVRPFVDEYLAGRTPIPCTLCNNHLKFDQLL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              RQ+GAD +ATGHY R+     D+ + R ++ RP D  +DQ+YFLF  TQ QL    F
Sbjct: 122 LTARQIGADRIATGHYARNHY---DEARERWVLSRPADKSKDQTYFLFGLTQDQLSRTLF 178

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDI 245
           PLG+M+K +VR +A + GL++A K DSQ+ICF+  G Y   +K        E     G++
Sbjct: 179 PLGEMQKPAVRSMAADHGLELAQKPDSQEICFIPGGSYSQFLKAYLDEQGRELPDSSGEL 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V  +G++LG H GI  +T+GQR+GLG++  +PL+V+ +  +S  V VG  + L    +  
Sbjct: 239 VSASGEVLGHHEGIHGFTVGQRKGLGLSSPQPLYVLNIHPDSHAVQVGTDDQLLSRTLIA 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             +NW+          +  +  +KIR   +P P  ++    D V   F++ +  +  GQ+
Sbjct: 299 DRLNWVSI----PEPKEEIRVTIKIRHRHEPAPATLRVTAFDRVEATFDEPQRAITPGQS 354

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
            VFY  D     V GGG I    R+
Sbjct: 355 AVFYQGD----EVAGGGWIKAEDRA 375


>gi|197118358|ref|YP_002138785.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
 gi|197087718|gb|ACH38989.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
          Length = 359

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 210/373 (56%), Gaps = 16/373 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQD 72
           +       +++VAMSGGVDSSV AALLK  G+DV+GV+LQLY   +++   G +CC+  D
Sbjct: 1   MSDKAGKKQILVAMSGGVDSSVTAALLKEQGHDVMGVSLQLYERPESTPSGGKTCCSLTD 60

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DA RV   + +   V D  ERF+  VI  F + YAAG TP PC  CN  +KF  LL +
Sbjct: 61  VMDAARVAKRLGIPFEVIDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLDM 120

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GAD+LATGHY R    +  D +    + + +D  +DQSYFLF   Q+QL  + FP+
Sbjct: 121 AASFGADLLATGHYAR----IEQDAEEIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPV 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR+ A    L +A K +SQ+ICF+    Y   ++         GDIV  +G  
Sbjct: 177 GNLEKRVVREHAARFNLPVAQKQESQEICFIPDNDYVRFLEEAGVRPEA-GDIVDKSGNK 235

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H GI  YTIGQRRGLG+A  EPL+V  +D  +SRV+VGP E L++  +   E+ W  
Sbjct: 236 LGSHVGIHKYTIGQRRGLGIAWKEPLYVTAIDGATSRVVVGPEEDLKIGGLVAGELTWTD 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  +  GF     IR    PVP   +  +DG + V+FE  +  V  GQA V Y  D
Sbjct: 296 -----KPISGGFNGSCSIRYRMQPVPCSARLIEDGRMQVEFETPQRAVTPGQAVVLYQGD 350

Query: 372 SNEARVLGGGIIS 384
               +V+GGG I 
Sbjct: 351 ----KVVGGGWIK 359


>gi|225016206|ref|ZP_03705398.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
           DSM 5476]
 gi|224951028|gb|EEG32237.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
           DSM 5476]
          Length = 352

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 191/364 (52%), Gaps = 14/364 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ MSGGVDSSV AALL   GY+V+G T +L+         + +CC+  D+ DAR VC  
Sbjct: 1   MIGMSGGVDSSVAAALLIEQGYEVVGATFRLWKPEDDLFDSEATCCSLDDINDAREVCHQ 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV + +  F+ AV+  F   Y AG TP PC+ CN+ +KF         LG D +A
Sbjct: 61  LGIPHYVLNLKREFKEAVVQNFVEEYQAGRTPNPCIVCNQKIKFDYFYQKAAALGFDYVA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    +  + +    +      ++DQSYFL+      L  + FPLG   K  VR+
Sbjct: 121 TGHYAR----IEQNEQGEFQLKTAAYAQKDQSYFLYGIPYPNLGHILFPLGGYTKPQVRE 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA + G  ++ K DSQ+ICFV +  Y   ++R    I  +G+ +   G +LG H GI +Y
Sbjct: 177 LAEKYGFSVSHKRDSQEICFVDRNGYGTFLERFTGTIPPKGNFIDSQGTVLGEHKGIWHY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLG+A G+P++V  ++   + V +   E     R+    +N+L           
Sbjct: 237 TVGQRKGLGMAFGKPMYVSEINPADNTVRLVDDEENYSSRLTAERMNYL----IPHPPSK 292

Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +  VKIR+  +  P  +   ++  + + F++ +  +  GQ+ V Y  +      LGGG
Sbjct: 293 PVRVQVKIRNRAEFAPALLTPLSEAKIELAFDQPQRAITKGQSAVLYDGEV----CLGGG 348

Query: 382 IISG 385
           II+ 
Sbjct: 349 IITA 352


>gi|212696912|ref|ZP_03305040.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676202|gb|EEB35809.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 369

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 193/368 (52%), Gaps = 24/368 (6%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDSSV A LLK +GYDV G+ ++ ++    +   G C A  D  DA +VC+ I +
Sbjct: 14  GVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
            +Y  ++E+ + + V   F   Y  G TP P + CN+ +KF   L   + LGAD LATGH
Sbjct: 71  PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R     G+       M R +D  +DQ+YFL   +Q Q+ D+ FP+G++ K+ VR +A+
Sbjct: 131 YARVDREDGE-----TKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGNLDKKEVRKIAK 185

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E  L  ADK DS  ICF+ +  + + +       A EG+IV  +G ++G+H G++ +TIG
Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLSNYLP--AKEGNIVDTDGNVMGKHYGLMYHTIG 243

Query: 266 QRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGLG+   GE  FV   D   + +IV      E L  +R+    ++ +        + 
Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSIS----AKGLK 299

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
             F C  K R  Q  +   V+  DDG V + ++K+   V  GQA VFY  +      LG 
Sbjct: 300 KEFDCTCKFRYRQKDINSHVKILDDGKVEITYDKT-KAVTPGQAAVFYDGEV----CLGS 354

Query: 381 GIISGSKR 388
            II     
Sbjct: 355 CIIDEVYN 362


>gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
          Length = 363

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 185/379 (48%), Gaps = 29/379 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ GY+V+G+ ++ +     S+    C + QD  DA  V
Sbjct: 4   KRRVVVGLSGGVDSAVSAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSSRQDFLDAAAV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L    +LGA+
Sbjct: 61  ADVIGIDLEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + + +D  +DQSYFL    Q QL    FP+G++ K  
Sbjct: 121 RIATGHYARVRERDG-----RFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGELPKTE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + + + R  A     GDI    G+++GRH G+
Sbjct: 176 VRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLAQA--PGDIEDERGRVVGRHVGL 233

Query: 260 INYTIGQRRGLGVAM-------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIYLREIN 309
             YT+GQR+GLG+           P +V   +   +  RV+ G     L    +   +  
Sbjct: 234 SFYTLGQRQGLGIGGLKSGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAGDCA 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W+      D          K R  Q      ++R+ + V + F + +  V  GQ+ V Y 
Sbjct: 294 WVAGTPPADGA-----LAAKTRYRQADAACTLRRDGEAVVLSFAEPQWAVTPGQSAVVYD 348

Query: 370 SDSNEARVLGGGIISGSKR 388
            +      LGGG+I  S+ 
Sbjct: 349 GEV----CLGGGVIESSEP 363


>gi|310657467|ref|YP_003935188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sticklandii DSM 519]
 gi|308824245|emb|CBH20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sticklandii]
          Length = 372

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 198/385 (51%), Gaps = 26/385 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+ MSGGVDSSV A +LK  GYDV+G+ ++ ++ +      G C A +D  D RRV
Sbjct: 2   KKRVVLGMSGGVDSSVSAVILKEAGYDVVGIFMKNWDEKDED---GVCTATEDYEDVRRV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF+  L    +L AD
Sbjct: 59  ADQLGIPYYTVNFEKEYWDRVFSYFLDEYNKGRTPNPDVMCNQEIKFNAFLDYALKLDAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY R      ++   +  + R +D  +DQ+YFL    Q+ L    FP+G+++K  
Sbjct: 119 YIAMGHYARV-----EERDGKFYLLRGVDNNKDQTYFLSRIGQKALSKSLFPIGELEKSK 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR++A +  L  A K DS  +CF+ +  +   + +    ++ +GD+++++ G+ + +H+G
Sbjct: 174 VREIAEKNELYTAKKKDSTGVCFIGERDFDAFLDKYL--LSKKGDMINVDTGKKISQHHG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           + +YT+GQR+     GV  GEP FVV  D   + + V      E+L    +      W  
Sbjct: 232 LYHYTLGQRKGIGIGGVGSGEPWFVVGKDLKKNLLYVAQGEQHEALYSTSLIGEAPAWTL 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           D    +  V    C  K R  Q  +PV V + +DG +++ ++     V  GQ  V Y +D
Sbjct: 292 D----EEPVFPLHCTAKFRYRQQDIPVTVHKMEDGNIHIVYDNPVKAVTPGQVAVLYDAD 347

Query: 372 SNEARVLGGGIISGSKRSDAVEESL 396
                 LG  II   +  ++  + L
Sbjct: 348 I----CLGSSIIKSIEPVNSKYKYL 368


>gi|253580125|ref|ZP_04857392.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848644|gb|EES76607.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39BFAA]
          Length = 360

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 13/365 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L K  G + IG T++L +N     KR+ +CC+  DV DAR VC
Sbjct: 3   KAIIAMSGGVDSSVAALLTKETGDECIGATMKLFHNEDIGVKREKTCCSLDDVEDARNVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YVF++ ERF+  V+  F  +Y  G TP PC+DCNR +KF  +    R+L  D 
Sbjct: 63  YRMGIRYYVFNFSERFKEDVMDRFVDAYEHGSTPNPCIDCNRYLKFDKMFQRMRELEYDY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R      D+ K R ++ + +D  +DQSY L+  TQ+QL  +  PLG ++K  V
Sbjct: 123 IVTGHYARVEY---DEEKNRYLLKKAVDDTKDQSYVLYMLTQEQLAHISLPLGGLRKTEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A + G   A K DSQDICFV  G Y   +++     ++ GD V   G ILG+H GII
Sbjct: 180 REIAEKHGFVNARKHDSQDICFVPDGDYAKFIEQYTGRKSIPGDFVDTEGNILGKHKGII 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YT+GQRRGLG+     L+V  +   +++V++G  E L    +   ++N +      +++
Sbjct: 240 HYTLGQRRGLGIPAASRLYVCDISPKTNQVVLGNNEDLFHSELTATKVNLISC----ESL 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +  +   KIR           + +DGV +V F+K +  +  GQA V Y  D     V+G
Sbjct: 296 KEPMRLKAKIRYRHPEQEAVAWQTEDGVLHVRFDKPQRAITRGQAVVLYDGDI----VVG 351

Query: 380 GGIIS 384
           GG+I 
Sbjct: 352 GGVIE 356


>gi|153208378|ref|ZP_01946716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|120576035|gb|EAX32659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 362

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+
Sbjct: 1   MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   
Sbjct: 58  SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL +  FP+G
Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+
Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETPEGKII 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L    +  
Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             ++W+ D            C  K R  Q      + R D D  +V FE  +  +  GQ+
Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY  +      LGGGII
Sbjct: 347 VVFYLGN----ECLGGGII 361


>gi|206561667|ref|YP_002232432.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia J2315]
 gi|229486335|sp|B4EE50|MNMA_BURCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|198037709|emb|CAR53652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia J2315]
          Length = 391

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 175/387 (45%), Gaps = 37/387 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 231

Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+     G     GEP FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359
           +      +   DGF C  K R  Q                     +    + F+ ++  V
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACVFGLAATGAEAAGPAGEARFSLAFDDAQWAV 347

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
             GQ+ V Y  +      LGGGII  +
Sbjct: 348 TPGQSAVLYDGEI----CLGGGIIESA 370


>gi|165923972|ref|ZP_02219804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 334]
 gi|165916580|gb|EDR35184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 334]
          Length = 362

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+
Sbjct: 1   MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   
Sbjct: 58  SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL +  FP+G
Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+
Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETPEGKII 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L    +  
Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             ++W+ D            C  K R  Q      + R D D  +V FE  +  +  GQ+
Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY  +      LGGGII
Sbjct: 347 VVFYLGN----ECLGGGII 361


>gi|319935498|ref|ZP_08009933.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1]
 gi|319809529|gb|EFW05946.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1]
          Length = 379

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 191/383 (49%), Gaps = 27/383 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ +SGGVDS+V A LLK  GY+VI V ++ ++S   +   G+       C   +D  
Sbjct: 6   KVVLGLSGGVDSAVAAYLLKEQGYEVICVFMRNWDSSLNNDILGNPTNNNEICPQEEDYN 65

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA++V + + +     D+ + + + V   F   YA G TP P + CN+ +KF   L   +
Sbjct: 66  DAKKVAEHLGLELRRVDFIKEYWDHVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 125

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            + AD +ATGHY R   ++G D     +M R +D  +DQ+YFL    Q QL    FP+G+
Sbjct: 126 SIDADYIATGHYARVEHHLGQD----SLMLRGVDNNKDQTYFLCQLNQLQLQSSLFPIGE 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           + K  VR LA ++ L +A K DS  ICF+ +  + + +K      A  G +V +   QI+
Sbjct: 182 LTKPEVRKLAEDLNLPVAHKKDSTGICFIGERDFREFLKNYIP--AKNGHMVDIQTKQIV 239

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           G H GI+ YTIGQR+GL +   G+  FVV  + + + + V      + L      + ++N
Sbjct: 240 GEHQGIMYYTIGQRKGLNIGGPGDAWFVVGKEYDQNILYVCQGDQNDWLMSEGALITDVN 299

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W+            F C  K R  Q    V +   D+  +YV F++    V  GQA VFY
Sbjct: 300 WI----MSQKPESEFSCTAKFRYRQKDNDVSIHFIDETTIYVTFKQPIKAVTPGQAAVFY 355

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             D      LGGG I    +   
Sbjct: 356 NDDV----CLGGGTIEKVYKDQK 374


>gi|296112822|ref|YP_003626760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moraxella catarrhalis RH4]
 gi|295920516|gb|ADG60867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moraxella catarrhalis RH4]
          Length = 392

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F  ++  V 
Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|241758623|ref|ZP_04756737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria flavescens SK114]
 gi|241321134|gb|EER57330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria flavescens SK114]
          Length = 367

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 189/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD 
Sbjct: 1   MNTTNTPTNIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++
Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +      ++      +   K R      P  ++  +D+ V + F++ +  V  GQ+ V Y
Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMADAPCTLRYLDDETVELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDV----CLGGGIIMSTDKP 362


>gi|189036221|sp|A9KE87|MNMA_COXBN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+
Sbjct: 1   MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   
Sbjct: 58  SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL +  FP+G
Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+
Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETPEGKII 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L    +  
Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             ++W+ D            C  K R  Q      V R D D  +V FE  +  +  GQ+
Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY  +      LGGGII
Sbjct: 347 VVFYLGN----ECLGGGII 361


>gi|330838778|ref|YP_004413358.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC
           35185]
 gi|329746542|gb|AEB99898.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC
           35185]
          Length = 352

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 141/367 (38%), Positives = 205/367 (55%), Gaps = 19/367 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V VAMSGGVDSS+ AALL+  GY+V+G+T+QL +  +               DARRV
Sbjct: 2   KKKVAVAMSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMN-----GVSSAATDARRV 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + H V D+   F + V+  F + Y    TP PCV CNR +KF +LLS  ++ GAD
Sbjct: 57  ADFLGIEHVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGAD 116

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY+R    V  +      + +  D ++DQSY L+   ++ L  + FPLG  +KE 
Sbjct: 117 FLATGHYVR----VEKEEDGSFSLKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R LA+++ L +A+K++SQ+ICFV +  Y   + +        GDIV + GQILG+H G+
Sbjct: 173 TRALAQKLSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGL 232

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG+A   PL+V+ LD+ ++RVIVG  E L    ++  ++NWL      + 
Sbjct: 233 PFYTIGQRKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLM-----EE 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                    KIR     V   V   +DG V V F + +  V  GQ+ VFY+ +    R++
Sbjct: 288 PTQEISVHAKIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLV 343

Query: 379 GGGIISG 385
           GG  I  
Sbjct: 344 GGATIES 350


>gi|326569370|gb|EGE19430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC8]
          Length = 392

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F+ ++  V 
Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|222112576|ref|YP_002554840.1| tRNA-specific 2-thiouridylase mnma [Acidovorax ebreus TPSY]
 gi|254811451|sp|B9MIA2|MNMA_DIAST RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221732020|gb|ACM34840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax ebreus TPSY]
          Length = 370

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 182/382 (47%), Gaps = 33/382 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  V
Sbjct: 3   KHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEF---CSSRQDFLDAASV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 60  ADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    +       + + +D  +DQSYFL    Q QL    FP+GD+ K  
Sbjct: 120 KIATGHYARVR---QNPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGDLHKTE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A ++GL  A K DS  ICF+ +  + + + R        G I+   G+ LGRH G+
Sbjct: 177 VRRIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQHA--PGPILDDRGRKLGRHVGL 234

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304
             YT+GQR+GLG+                P FV   +  ++  RV+ G     L  HR+ 
Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGAGDHAPWFVARKELETNTLRVVQGHEHPWLLSHRLD 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++ +W+              C  K R  Q      V     D   + F +++  V  GQ
Sbjct: 295 AQDASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFSLQFPEAQWAVTPGQ 349

Query: 364 ACVFYTSDSNEARVLGGGIISG 385
           + V Y  +      LGGG+I+ 
Sbjct: 350 SAVLYDGEV----CLGGGVIAA 367


>gi|50365230|ref|YP_053655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesoplasma florum L1]
 gi|81612889|sp|Q6F152|MNMA_MESFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50363786|gb|AAT75771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesoplasma florum L1]
          Length = 374

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 189/379 (49%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V+V +SGGVDSSV A LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 2   KKKVIVGLSGGVDSSVAAYLLIQQGYEVEGLFMRNWDSSANNDILGNQEIDNDVCPQEQD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA  V + + +  +  D+ + +   V   F   Y  G TP P + CN+ +KF   L+ 
Sbjct: 62  YLDALEVANKLGIKLHRIDFVQEYWEYVFEYFIKEYKKGRTPNPDILCNKYIKFDKFLNH 121

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              +L AD +A GHY   R    ++  ++  M R +D  +DQ+YFL   TQ QL    FP
Sbjct: 122 AINELKADYIAMGHYAGVRF---NEKTKQYEMIRAVDTNKDQTYFLCQLTQNQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L  ++K  +R +A E GL  ADK DS  ICF+ + ++   ++   +     GDIV +   
Sbjct: 179 LQSLEKPEIRKIAAEQGLITADKKDSTGICFIGEREFTKFLQNYISN--QPGDIVDIKTN 236

Query: 251 QILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306
           ++LG+H G + YTIGQR+GL    M EP +V   D +   + V P      L  +   + 
Sbjct: 237 EVLGKHIGAMYYTIGQRKGLNLGGMKEPYYVAAKDIDKKIIYVCPASDESYLLSNNAIVT 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQAC 365
           EINW  D       V+ F+C  K R  Q  V V + +  D+   V ++     V  GQ  
Sbjct: 297 EINWSLDLKQYIDNVEEFECTAKFRYRQPDVKVRLNKIKDNEYKVSYDAIVKAVTPGQEA 356

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY +D      LGGGII 
Sbjct: 357 VFYLNDI----CLGGGIID 371


>gi|81628239|sp|Q820W2|MNMA_COXBU RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+
Sbjct: 1   MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   
Sbjct: 58  SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL +  FP+G
Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+
Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETSEGKII 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L    +  
Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             ++W+ D            C  K R  Q      V R D D  +V FE  +  +  GQ+
Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY  +      LGGGII
Sbjct: 347 VVFYLGN----ECLGGGII 361


>gi|326565359|gb|EGE15537.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 12P80B1]
          Length = 392

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F  ++  V 
Sbjct: 306 TAYKLDWGIAPPVQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|326567524|gb|EGE17639.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC1]
          Length = 392

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     SK    C A  D+ D
Sbjct: 15  KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSK---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 SQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F+ ++  V 
Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|148380860|ref|YP_001255401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153934263|ref|YP_001385167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153935159|ref|YP_001388636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
 gi|205810535|sp|A7FXG3|MNMA2_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|205810559|sp|A5I5Y9|MNMA2_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|148290344|emb|CAL84469.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152930307|gb|ABS35807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931073|gb|ABS36572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
          Length = 353

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 209/363 (57%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+       RKG C       DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDE----RKGYC-NKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V + E++F++ VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++   R+++ +  D ++DQ+Y ++   Q QL     P G+ KK+ +R+
Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       +G+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIAKDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     ++GGG
Sbjct: 292 SMELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKD----MLVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|210622568|ref|ZP_03293250.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275]
 gi|210154151|gb|EEA85157.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275]
          Length = 357

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 136/366 (37%), Positives = 218/366 (59%), Gaps = 14/366 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V++ MSGGVDSSV A LLK  GYDVIGV + L N     +++ +      + DARRV
Sbjct: 2   KKKVMLGMSGGVDSSVAAYLLKEQGYDVIGVNMMLSNDNTEEEKRMT---EDSIRDARRV 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++  +V D+   F+  VI  F   YA G TP PC+ CN+ +KF     V  + G D
Sbjct: 59  AEKLDIPLHVLDFRREFKEKVIDDFIKEYAEGRTPNPCIVCNKFIKFGLFFDVAEKFGCD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D+   R ++ +    ++DQ+Y L+   Q+QL  +  P+G+ +K++
Sbjct: 119 YVATGHYARVER---DEKTGRLVLKKGESAKKDQTYNLYNIKQEQLERILLPIGNYEKDT 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+++GLD+ +K DSQ+ICF++   Y   +K  +      G+ V  +G +LG+HNGI
Sbjct: 176 VREIAKKIGLDVHNKKDSQEICFIKDNDYVRYLKENSDIKIKTGEFVEADGTVLGKHNGI 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           INYTIGQR+GLG+A G+P+FVV ++   +RV++G  + L    + ++++N +    F+ A
Sbjct: 236 INYTIGQRKGLGIAFGKPMFVVDINAKKNRVVLGSNDDLFKKELVIKDVNTI---PFDFA 292

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            VD FK + K+R +  P    V + +D+   V FE+++  +  GQ+ V Y  D     ++
Sbjct: 293 DVDEFKVYAKVRYAAKPSLATVTKLSDNTAKVVFEEAQRAITKGQSLVMYDGDI----LV 348

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 349 GGGIID 354


>gi|83312118|ref|YP_422382.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Magnetospirillum magneticum AMB-1]
 gi|123541366|sp|Q2W2V2|MNMA_MAGMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82946959|dbj|BAE51823.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Magnetospirillum magneticum AMB-1]
          Length = 373

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/388 (50%), Positives = 246/388 (63%), Gaps = 22/388 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKR 63
           +N+LD+DK P   RVVVAMSGGVDSS VAALLK  GYDV+GVTLQLY+         + R
Sbjct: 1   MNTLDIDKPPSSTRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
             +CCAG+D++DAR V D + + HYV D+EE FR  V+  FA +Y    TP+PC++CNRT
Sbjct: 61  PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEARTPVPCIECNRT 120

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL V + LG D LATGHY+R R   G DG     +    D  RDQSYFLFATT+ 
Sbjct: 121 VKFRDLLGVAKDLGGDALATGHYVRRRP--GVDGPE---LWTGRDPGRDQSYFLFATTRD 175

Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           QL  LRFPLGDM  KE  R +A    L +A K DSQDICFV  G Y  +V R++   A  
Sbjct: 176 QLDFLRFPLGDMAGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPDAARP 235

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G+IV   G++LGRH G+I+YTIGQRRGLG+  G PL+VV L+  + RV+VG RE L    
Sbjct: 236 GEIVDTAGKVLGRHGGLIHYTIGQRRGLGLGGGPPLYVVALEPETGRVVVGSREDLNCLT 295

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361
           I +  +NWLG    E       +  VK+RS++   P  ++R + D   V  +  E GVA 
Sbjct: 296 IQVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLSGDRAQVILDHPEQGVAP 349

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389
           GQACVFY  +    RVLGGG I  S+ +
Sbjct: 350 GQACVFYQGE----RVLGGGWICPSREA 373


>gi|46447434|ref|YP_008799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/
           antisuppressor [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626468|sp|Q6MA75|MNMA_PARUW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46401075|emb|CAF24524.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase/
           Antisuppressor [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 376

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 196/371 (52%), Gaps = 23/371 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
                VVV MSGGVDSSV A L+K  GY+VIG+ ++ +  +  +   G C + QD  D R
Sbjct: 2   KNQKTVVVGMSGGVDSSVSALLMKEQGYNVIGLFMKNWEEKDEN---GVCSSAQDYDDVR 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RVCD IN+ +Y  ++ E +R  V   F + +  G TP P + CNR +KF   L    +LG
Sbjct: 59  RVCDHINIPYYAVNFVENYRKQVFTQFIADFQKGWTPNPDILCNREIKFKVFLEKALELG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LATGHY ++ +      K    + + +D  +DQ+YFL+   QQ L  + FP+G ++K
Sbjct: 119 ADFLATGHYCQNLILD----KGSPSLVKGIDHNKDQTYFLYTLNQQILQQVLFPVGGLEK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VRD+AR+  L  A+K DS  ICF+ +  +   + +  A     G    L G+ +G+H 
Sbjct: 175 SQVRDIARKHQLVTAEKKDSTGICFIGERDFRSFLSQYVA--IQPGAFQTLQGKNVGKHM 232

Query: 258 GIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313
           G   YT+GQR+GLG+   GE  FVV  D     V V       +L    +   +++W+  
Sbjct: 233 GTAYYTLGQRKGLGIGGAGEAWFVVGKDHERGIVFVEQGANHPALYCDELIATDLSWVA- 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
               +A +  + C  K+R  Q+     + R ++G  +V F++ +  V  GQ+ VFY  + 
Sbjct: 292 ----EAPLLPYTCQSKVRYRQNDQFCTIHRIENGKAFVTFDRPQRAVTPGQSIVFYVGNI 347

Query: 373 NEARVLGGGII 383
                LGGG+I
Sbjct: 348 ----CLGGGVI 354


>gi|107021774|ref|YP_620101.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia AU
           1054]
 gi|116688721|ref|YP_834344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia HI2424]
 gi|123072405|sp|Q1BZ27|MNMA_BURCA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205811383|sp|A0K4M4|MNMA_BURCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|105891963|gb|ABF75128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116646810|gb|ABK07451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 391

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 175/387 (45%), Gaps = 37/387 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   
Sbjct: 2   SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     L A
Sbjct: 59  VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +++ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K 
Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+++G H G
Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 231

Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT GQR+     G     GEP FV   D  S+ + V        L    +    ++W
Sbjct: 232 LAFYTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359
           +      +   DGF C  K R  Q                     +    + F+ ++  V
Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEVRFSLAFDDAQWAV 347

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
             GQ+ V Y  +      LGGGII  +
Sbjct: 348 TPGQSAVLYDGEI----CLGGGIIESA 370


>gi|289423552|ref|ZP_06425353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156054|gb|EFD04718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus anaerobius 653-L]
          Length = 350

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 204/367 (55%), Gaps = 22/367 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V++ MSGGVDSSV A LLK++GYDV+GV ++L++              +DV DA  V
Sbjct: 3   KKKVLLGMSGGVDSSVAAYLLKKEGYDVVGVNMKLWDRPDE----------KDVEDAISV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++  +V D ++ F+  VI  F   Y AG TP PCV CN+ +KF DL     +LG D
Sbjct: 53  CEKLDIPFHVIDLQKEFKGKVIENFIKEYEAGHTPNPCVFCNKNIKFGDLFKKAEELGCD 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    L   ++ K    + +  +  +DQ+Y ++  +Q++L  + FP+G   K+ 
Sbjct: 113 YIATGHYA---LIEYNEEKGIYELKKASNSNKDQTYVMYNLSQEKLSKILFPIGKYNKDQ 169

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A+E+GL + +K DSQDICF+    Y   +K        EG  V  +G  LG H GI
Sbjct: 170 IREMAKEIGLKVYNKPDSQDICFIPDNNYERFLKEKTNIRVNEGIFVDKDGNKLGDHKGI 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GLG+  G+P +V+ ++   + +++G  E L    +  ++ N++   +  + 
Sbjct: 230 ISYTIGQRKGLGMTFGKPTYVIDINAKDNTIVLGDNEDLFKTELVAKDANFIPFDI--ET 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    K   KIR S       V    D+ + V F++++  +  GQ+ VFY  D      L
Sbjct: 288 LDGTRKFDAKIRYSSSLSKASVTYLGDNRIRVVFDQAQRAITRGQSVVFYDGD-----CL 342

Query: 379 -GGGIIS 384
            GGGII 
Sbjct: 343 VGGGIIE 349


>gi|298292472|ref|YP_003694411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Starkeya novella DSM 506]
 gi|296928983|gb|ADH89792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Starkeya novella DSM 506]
          Length = 395

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 205/360 (56%), Positives = 256/360 (71%), Gaps = 6/360 (1%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQ 71
           D  ++P   RVVVAMSGGVDSSVVAAL  + GYDV+GVTLQLY+  +A   R G+CCAGQ
Sbjct: 6   DTSRSPSHTRVVVAMSGGVDSSVVAALYAKAGYDVVGVTLQLYDHGEAMHHRPGACCAGQ 65

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDAR V + + + HYV DYE RFR+AVI  FA +YAAGETP+PCVDCNRTVKF DLL 
Sbjct: 66  DIYDARTVAEKLGIPHYVLDYESRFRHAVIERFADAYAAGETPIPCVDCNRTVKFRDLLE 125

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R LGAD+LATGHY+ SR   G     RR + RP+D  RDQSYFL+ATTQ+Q+  LRFP
Sbjct: 126 TARDLGADILATGHYVTSRALEG----GRRALFRPLDESRDQSYFLYATTQEQIDMLRFP 181

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG+  K  VR LA E GL +ADK DSQDICFV  G Y  +V+++    A  G+IVHL+G+
Sbjct: 182 LGETTKPEVRALAEEFGLKVADKPDSQDICFVPNGHYTAIVEKLRPEAAEPGEIVHLDGR 241

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG+H G++ YTIGQR+GLG+A  EPL+VV +D    RV+VGPR +L V  I + E+NWL
Sbjct: 242 VLGQHAGVMRYTIGQRKGLGIAASEPLYVVGIDAGRRRVLVGPRAALGVSAIRIDEVNWL 301

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           GD   + A   G   +VK+RS++ PVP  + + +D GV V    +E GVA GQACVFY  
Sbjct: 302 GDETLDAAAEAGRDLYVKVRSARAPVPGHLARASDGGVEVHLAGAEEGVAPGQACVFYED 361


>gi|295104304|emb|CBL01848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 367

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/376 (34%), Positives = 204/376 (54%), Gaps = 13/376 (3%)

Query: 15  DKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQD 72
            +NP +    ++AMSGGVDSSV A L+++ GYD  G+T++L +N         +CC+ +D
Sbjct: 3   TQNPANRPHALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKD 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  V   +++ + V D+   FR  +I  F   Y AG TP PC+DCN+ +KF  LL  
Sbjct: 63  IEDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDW 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G + + TGHY R      D    R ++ + +D  +DQSY L+  TQ+QL  +R PL
Sbjct: 123 AEEHGMEYVVTGHYARVE---QDAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPL 179

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G + K  VR +A+E     A K DSQDICFV  G Y   +++        GD +  +G++
Sbjct: 180 GALHKTEVRKIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKV 239

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H+G + YT+GQR+GLG+A+G P++V   D  ++ V VGP   L    +Y  ++NW+ 
Sbjct: 240 VGTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDRIVYAEDVNWIA 299

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 A+    +   + R  Q      V   ++G  ++F++ +     GQA V Y  D 
Sbjct: 300 I----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV 355

Query: 373 NEARVLGGGIISGSKR 388
               VLGGG I+  ++
Sbjct: 356 ----VLGGGTITRVEK 367


>gi|161830166|ref|YP_001597021.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 331]
 gi|189040503|sp|A9NDN1|MNMA_COXBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161762033|gb|ABX77675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 331]
          Length = 362

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    ++  + V +SGGVDSSV A +LK  GY+VIG+ +Q + +     +   C A QD+
Sbjct: 1   MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ + D I +  YV ++ + + N V       +A G TP P V CNR +KF  LL   
Sbjct: 58  SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++LGA  LATGHY   +     +      + +  D  +DQSYFL    Q QL +  FP+G
Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             +K  VR +A++ G     K DS  ICF+ + K+ D +      +A  G+I    G+I+
Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAKPGNIETSEGKII 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           G+H+GI+ YT+GQR+GL +         P +VV  D   + +IV        L    +  
Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364
             ++W+ D            C  K R  Q      V R D D  +V FE  +  +  GQ+
Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQS 346

Query: 365 CVFYTSDSNEARVLGGGII 383
            VFY  +      LGGGII
Sbjct: 347 VVFYLGN----ECLGGGII 361


>gi|46202527|ref|ZP_00053063.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 373

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 193/388 (49%), Positives = 248/388 (63%), Gaps = 22/388 (5%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKR 63
           +NSLD+DK     RVVVAMSGGVDSS VAALLK  GYDV+GVTLQLY+         + R
Sbjct: 1   MNSLDIDKPASATRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
             +CCAG+D++DAR V D + + HYV D+EE FR  V+  FA +Y   +TP+PC++CNRT
Sbjct: 61  PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEAKTPVPCIECNRT 120

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DLL V + LGAD LATGHY+R R      G +   M    D  RDQSYFL+ATT+ 
Sbjct: 121 VKFRDLLGVAKDLGADALATGHYVRRRS-----GPQGPEMWAGRDPGRDQSYFLYATTRA 175

Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           QL  LRFPLGDM  KE  R +A    L +A K DSQDICFV  G Y  +V R++   A  
Sbjct: 176 QLDFLRFPLGDMSGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPEAARP 235

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G+IV  +G++LGRH G+I+YTIGQRRGLG+  G PL+VV L+  + RV+VG R+ L+   
Sbjct: 236 GEIVDSSGKVLGRHEGLIHYTIGQRRGLGLGGGPPLYVVALEPETDRVVVGGRQDLDCPV 295

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361
           + +  +NWLG    E       +  VK+RS++   P  ++R  +G   V  +  E GVA 
Sbjct: 296 VPVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLPNGRAEVILDHPEQGVAP 349

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389
           GQACVFY  +    RVLGGG IS  + +
Sbjct: 350 GQACVFYQGE----RVLGGGWISRVREA 373


>gi|315167557|gb|EFU11574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1341]
          Length = 351

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 182/367 (49%), Gaps = 26/367 (7%)

Query: 39  LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98
           LLK  GYDVIG+ ++ ++    +   G C A +D  D  +V D I + +Y  ++E+ + +
Sbjct: 2   LLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWD 58

Query: 99  AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158
            V   F + Y  G TP P V CN+ +KF   L    QLGAD +ATGHY +    V  D  
Sbjct: 59  RVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VETDEN 114

Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
               M R +D  +DQ+YFL   +Q QL    FPLG M+K  VR +A   GL  A K DS 
Sbjct: 115 GVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIAERAGLATAKKKDST 174

Query: 219 DICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI----GQRRGLGVAM 274
            +CF+ +  + + +       A +G++V  +G+I G+H+G++ YTI    G   G G   
Sbjct: 175 GVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKT 232

Query: 275 GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR 331
            EP FV+  D  ++ + VG     E L    +   E+++  D      +   F C  K R
Sbjct: 233 QEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDT----PMPKEFDCTAKFR 288

Query: 332 SSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
             Q  +PV V  ++DG    V F++    V  GQA VFY         LGGG+I  + + 
Sbjct: 289 YRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDG----MECLGGGLIDRAYQD 344

Query: 390 DAVEESL 396
           +   + +
Sbjct: 345 EKELQYV 351


>gi|223936336|ref|ZP_03628248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [bacterium Ellin514]
 gi|223894854|gb|EEF61303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [bacterium Ellin514]
          Length = 349

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 142/358 (39%), Positives = 201/358 (56%), Gaps = 12/358 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSS  AALL   GYDVIG+TL+L+     ++ +  CC  Q V DAR V + + + 
Sbjct: 1   MSGGVDSSAAAALLLEQGYDVIGITLKLWPQDCVNRAEDKCCGPQAVMDARSVSNKLGIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y+ D    F+  VI  FA  Y AG TP PCV CN  +KF  L+S  +QLGA+ +ATGH+
Sbjct: 61  YYLVDESADFQKQVIGYFAEEYKAGRTPNPCVMCNEKLKFGTLISRAQQLGAEYIATGHF 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R+          R ++ R  D  +DQSYFLF+  Q QL    FPLG + K   R +AR+
Sbjct: 121 ARTEKSAD---GSRMLLKRGRDPRKDQSYFLFSLRQDQLARTIFPLGQLTKTDTRTVARQ 177

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
             L  ADK +S +ICFV    Y   +++ N     +G+IV+++G +LG+H+GI  YTIGQ
Sbjct: 178 CELKTADKEESMEICFVPDNDYGKFLQQANLVKKHKGEIVNVHGHVLGQHDGIEFYTIGQ 237

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           RRGLG++  +PL+VV LD  ++RV+VG   +L+     +   NW+       +  + F+ 
Sbjct: 238 RRGLGISSAKPLYVVELDAINNRVMVGDESALDRDEFTVERCNWIPFA----SPPETFEV 293

Query: 327 FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             KIR +       +    +G   V     +  +  GQACVFY  D     V+GGG I
Sbjct: 294 SAKIRYNHPGTGATITPQPNGTAKVKLHVPQRAITPGQACVFYQDD----LVVGGGWI 347


>gi|268316383|ref|YP_003290102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Rhodothermus marinus DSM 4252]
 gi|262333917|gb|ACY47714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Rhodothermus marinus DSM 4252]
          Length = 382

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 201/373 (53%), Gaps = 20/373 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYD 75
           +  RV+VAMSGGVDSSV AALL   GY+V+G+T++ ++   +  R G    CC+ + + D
Sbjct: 3   RHGRVLVAMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCCSLESMND 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V   +   H++ D  E F + VI  F   Y AG TP PC+ CN  +K++ LL    +
Sbjct: 63  ARAVAVRLGFPHFIVDIREEFGDWVIERFTEEYLAGRTPNPCILCNTHIKWAALLRRADR 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG D +ATGHY R R    D+   R ++ R  DL +DQSY L+   Q+ L     PLGD 
Sbjct: 123 LGCDYIATGHYARIRY---DESLGRYVISRGRDLNKDQSYVLWGIAQEHLARTLLPLGDY 179

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQ 251
            K  +R +A EMG + +A K DS +ICF+    Y   +++    +      G  V  +G 
Sbjct: 180 TKPEIRRMAAEMGFERLAQKPDSYEICFIPDNDYRRFLRQRVPDLDRKVGPGKFVLKDGT 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H G   YTIGQR GLG+A+G P +V ++D  ++ + VGPRE L   R+  R+IN +
Sbjct: 240 VVGTHRGYPFYTIGQRHGLGLALGYPAYVTHIDSETNTITVGPREELLRQRLVARQINLV 299

Query: 312 G-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
               L E+    G     KIR   +  P  V +  D ++V F +    +  GQA V Y  
Sbjct: 300 KYPDLREERPAIG-----KIRYKDEGAPCLVWQEGDALHVAFAEPRPAITPGQAVVLYEG 354

Query: 371 DSNEARVLGGGII 383
           D     VL GG I
Sbjct: 355 DD----VLAGGWI 363


>gi|254523199|ref|ZP_05135254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas sp. SKA14]
 gi|219720790|gb|EED39315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas sp. SKA14]
          Length = 380

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/393 (33%), Positives = 186/393 (47%), Gaps = 32/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A  L + G  V G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 61  LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     + ++ R  D  +DQSYFL    QQQL    FP+GD++K  +R
Sbjct: 121 ATGHYARVTQRGG-----QWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKSDLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
            +AR++GL    K DS  ICF+ +  + + + R     A  G I+   +G ++  H G+ 
Sbjct: 176 RIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLG 312
            +T+GQR GL +         P +VV  D  S+ + V        +   R+     +W+ 
Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSRWMLSDRLRSETAHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      F+C  + R  Q   P  V+  DDG V V F + +  V  GQ+ V Y  D
Sbjct: 294 GS----PPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVSFARPQRAVTPGQSLVLYDGD 349

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                 LGG +I+ +   DA  E  L      F
Sbjct: 350 V----CLGGAVIAAT---DAPLEQRLRTTPSPF 375


>gi|240117158|ref|ZP_04731220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID1]
 gi|268602848|ref|ZP_06137015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID1]
 gi|268586979|gb|EEZ51655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria gonorrhoeae PID1]
          Length = 383

 Score =  451 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 186/383 (48%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q + +    +    C   Q
Sbjct: 15  LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +
Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366
           +++    L E      + C  K R      P  +   +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGG I  + + 
Sbjct: 360 LYDVDI----CLGGGGIQTTDKP 378


>gi|238926764|ref|ZP_04658524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas flueggei ATCC 43531]
 gi|238885296|gb|EEQ48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas flueggei ATCC 43531]
          Length = 366

 Score =  451 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 202/372 (54%), Gaps = 14/372 (3%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVY 74
           +  +  RVVVAMSGGVDSSV AALL+  GY+V+GVT++L    + +   G SCC+   V 
Sbjct: 4   QRMEKQRVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEGRDADPDGRSCCSLSSVD 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DARRV D + + HYV D+ E F+  VI  F   YA G TP PC+ CNR +KF  LL   R
Sbjct: 64  DARRVADILGIPHYVMDFTEPFQQLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLGKIR 123

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA  +ATGHY R        G     + + +D  +DQSY L+  TQ+ +  + FPLGD
Sbjct: 124 ALGAQHIATGHYARITRT----GDGIYHLRKGIDTAKDQSYVLYHLTQKMMDHVLFPLGD 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            +K+ +R +A + GL +A K++SQ+ICFV    Y   ++         G I    G ILG
Sbjct: 180 YRKDEIRHMAEDYGLPVAHKAESQEICFVPHDDYKSYLRMHALQTMRPGAITDRAGHILG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H GI  YTIGQRRGLG++   PL+V+ LD   +RVIVG  + +    +    ++W    
Sbjct: 240 THEGIAFYTIGQRRGLGISAEHPLYVIALDAAENRVIVGASDEVFACALTASNLSWT--- 296

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                         KIR  +     +++   DG V V F + +  V  GQ+ VFY  D+ 
Sbjct: 297 -LPQPPHAPRSVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA- 354

Query: 374 EARVLGGGIISG 385
              VLGGG I  
Sbjct: 355 ---VLGGGSIDR 363


>gi|168181589|ref|ZP_02616253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|237796359|ref|YP_002863911.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum Ba4 str.
           657]
 gi|182675018|gb|EDT86979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|229264171|gb|ACQ55204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
          Length = 353

 Score =  451 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 205/363 (56%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GYDVIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  +V +  + F+  VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHVINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++  RR+++ +  D ++DQ+Y ++   Q QL     P G+ +KE +R+
Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ VFY  D     ++GGG
Sbjct: 292 SMELEAKVRYSAKPSKATIIPLGNNKVKVVFKNKQRAITKGQSVVFYDKD----MLVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|119899062|ref|YP_934275.1| tRNA-specific 2-thiouridylase MnmA [Azoarcus sp. BH72]
 gi|205812510|sp|A1K983|MNMA_AZOSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119671475|emb|CAL95388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Azoarcus sp. BH72]
          Length = 365

 Score =  451 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 182/378 (48%), Gaps = 29/378 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VVV MSGGVDSSV A LLK+ GY+V G+ ++ +      +    C   QD+ D   VC
Sbjct: 1   MKVVVGMSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDDDE---YCSTRQDLVDVASVC 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +   V ++   +++ V   F   Y AG TP P + CN  +KF   L    QLGA+ 
Sbjct: 58  DVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDILCNSEIKFRCFLDHAMQLGAER 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R ++ +DG+    + +  D  +DQSYFL+   Q QL    FPLG + K  V
Sbjct: 118 IATGHYAQVREWI-NDGRSEFQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGGLYKREV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A   GL +A K DS  ICF+ +  + + + R        G+I  L + ++LG H G+
Sbjct: 177 RKIAEAAGLHVATKKDSTGICFIGERPFREFLMRYLP--TKPGEIRCLDDDRVLGEHQGL 234

Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           + +TIGQR+GL +             E  +V   D  ++ + V       +L   R+   
Sbjct: 235 MYHTIGQRKGLHIGGIKGNQDEAGEHEAWYVAKKDVKANVLYVVQGHDHPALLKDRLLAT 294

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           ++NW+         V       K R     +P  +    +G   + F   +  +  GQ+ 
Sbjct: 295 DLNWIAGRDPRTHWV----YTAKPRYRTADMPCEIDALGEGRAEIAFATPQWALTPGQSV 350

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y         LGGG+I
Sbjct: 351 VVY----ESKVCLGGGVI 364


>gi|292670858|ref|ZP_06604284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas noxia ATCC 43541]
 gi|292647479|gb|EFF65451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas noxia ATCC 43541]
          Length = 365

 Score =  451 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/373 (41%), Positives = 212/373 (56%), Gaps = 14/373 (3%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72
           +++  K  RVVVAMSGGVDSS+ AALL+  GYDV+GVT++L   +R A     SCC+   
Sbjct: 1   MERKMKKERVVVAMSGGVDSSLAAALLQERGYDVVGVTMRLSAENRDAPSNDRSCCSLIS 60

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DARRV D + + HYV D+ E F++AVI  F + Y  G TP PC+ CNR +KF  LL  
Sbjct: 61  VDDARRVADVLGIPHYVMDFTEPFQHAVIDYFFNEYLHGRTPNPCIACNRFIKFEGLLHK 120

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++LGA  +ATGHY R     G DG  R  + + +DLE+DQSY L+   Q+ L  +  PL
Sbjct: 121 SKELGASYIATGHYARIDH--GKDGTYR--LRKGLDLEKDQSYVLYHMNQEILAHVLLPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G   K   R +A +  L +A K++SQ+ICFV +  Y   ++         G+IV   G +
Sbjct: 177 GVFSKHETRRMAEQYHLPVAYKAESQEICFVPRDDYKSYLREKRPESCCPGNIVDRAGNV 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H GI  YTIGQR+GLG+A  +PL+V  LD   +RV+VG    +    +   ++NW  
Sbjct: 237 LGIHEGIAFYTIGQRKGLGIAATQPLYVTALDTLHNRVVVGTANEVYARGLTASDLNWT- 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                 A+ +      KIR  +      +  + DG V+V F + +  V  GQ+ VFY  D
Sbjct: 296 ---MPIALDNPRTVQAKIRYGKRSASATITSHKDGEVHVLFSELQRAVTPGQSIVFYEDD 352

Query: 372 SNEARVLGGGIIS 384
                VLGGGII 
Sbjct: 353 V----VLGGGIID 361


>gi|332040942|gb|EGI77312.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC
           19624]
          Length = 386

 Score =  451 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 192/399 (48%), Gaps = 41/399 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK+ +  RVVV +SGGVDS+V A LLK+ G+DV+G+ ++ +     ++    C +  D 
Sbjct: 1   MDKSNRGQRVVVGLSGGVDSAVTAYLLKKQGHDVVGIFMKNWEDDDDNE---YCSSNVDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L   
Sbjct: 58  VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY R RL   ++   +  + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 118 MRLGAEKIATGHYARVRL---NEKTGKHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEG------- 243
           ++ K  VR +A E+GL  A K DS  ICF+ +  + + + R      G   +G       
Sbjct: 175 ELHKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIQKEPGPIKDGTPLPGSP 234

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVI 291
           D    +G+++G+H G+  YT+GQR+GLG+               EP FV   D + +++ 
Sbjct: 235 DYERAHGRVIGKHVGLSFYTLGQRQGLGIGGIKDKGAQKGGGEHEPWFVARKDMDKNQLW 294

Query: 292 VGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDG 347
           V        L+ H ++  + +W+                 K R  Q      +    D G
Sbjct: 295 VVQGHDHPLLQSHGLHALDASWIAGEPPLPG-----DLHAKARYRQADAACTLDHVEDSG 349

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
             + F +++  V  GQ+ V Y  +      LGGGI+  +
Sbjct: 350 FSLRFPEAQWAVTPGQSAVLYDGEV----CLGGGIVQQA 384


>gi|299143928|ref|ZP_07037008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518413|gb|EFI42152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 355

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 185/368 (50%), Gaps = 25/368 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ MSGGVDSSV AALLK  GYDV  V ++ ++        G C A +D  D  RVC  
Sbjct: 7   VILGMSGGVDSSVCAALLKEQGYDVTAVFMKNWDEEDDD---GVCTATEDYLDVIRVCSE 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + +Y  ++E+ +++ V   F S Y  G TP P V CN  +KF   L    +  +D +A
Sbjct: 64  LGIKYYTVNFEKEYKDRVFSYFLSEYEKGRTPNPDVMCNTEIKFKAFLEFAMKFNSDYIA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            GHY R+    G     +  + R +D  +DQSYFL    +  L    FP+G+MKKE VR+
Sbjct: 124 MGHYARTLKKDG-----KTYLLRGLDENKDQSYFLSRVPEAALSKTLFPIGNMKKEQVRE 178

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA++  L  A K DS  ICF+ +  + + + +       EGDI  ++GQ LG+H+G+++Y
Sbjct: 179 LAQKYNLATAKKKDSTGICFIGERNFNNFLDKFL--FTKEGDIYSVDGQYLGKHSGLMHY 236

Query: 263 TIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLF 316
           TIGQRR     G+  GEP FV   D  ++R+IV       +L           W+     
Sbjct: 237 TIGQRRGMGLGGMGSGEPFFVADKDLKNNRLIVAQGLKHPALYKKETICENAFWIT---- 292

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D      KC  KIR       + V   +D + V FE    GV  GQ  VFY  D     
Sbjct: 293 -DTPKFPLKCTGKIRYRAKDENMTVYLENDELKVIFENPLKGVTPGQVLVFYQGDI---- 347

Query: 377 VLGGGIIS 384
            LG GII 
Sbjct: 348 CLGSGIIK 355


>gi|261379871|ref|ZP_05984444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria subflava NJ9703]
 gi|284797568|gb|EFC52915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria subflava NJ9703]
          Length = 367

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 190/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ +     ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD 
Sbjct: 1   MNTHNTPANIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P + CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDILCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERSIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++
Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTQSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +      ++      +   K R      P  ++  +D+ + + F++ +  V  GQ+ V Y
Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMADAPCTLRYLDDETIELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDV----CLGGGIIMSTDKP 362


>gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
 gi|123555534|sp|Q31GM9|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
          Length = 379

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/383 (31%), Positives = 197/383 (51%), Gaps = 26/383 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++  +++V+V +SGGVDSSV A LLK+ GYDV G+ ++ +           C A +D+ D
Sbjct: 6   QDNSNIKVIVGLSGGVDSSVTALLLKQQGYDVEGLFMKNWEGDDTED---YCPAAEDLKD 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +C+ +++  +V ++   + + V   F + Y +G TP P + CN+ VKF   L     
Sbjct: 63  VLAICEKLDIPLHVENFSGEYWDRVFEHFLAEYQSGRTPNPDILCNKEVKFKAFLEHAMT 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD +ATGHY R    +  D   +  + + +D  +DQSYFL+   Q QL    FP+G++
Sbjct: 123 LGADYIATGHYAR----ISRDENGQCYLLKGLDNNKDQSYFLYTLQQHQLSKSMFPIGEL 178

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR LA E  L   DK DS  ICF+ + K+ D +++     A  GDIV+  G+++G 
Sbjct: 179 EKPYVRQLAEEADLITHDKKDSTGICFIGERKFKDFLQQFLP--AQPGDIVNTEGEVIGH 236

Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGPRESLEVHR-IYLRE 307
           H G++ +T+GQR+GLG+  G      P F    +  ++++  + G    L  H  +    
Sbjct: 237 HEGLMYHTLGQRKGLGIGGGFGDSGLPWFSADKNLETNQLIAVQGSDHPLLNHAFLTADT 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
            +W+                 K+R  Q   P  +    +G + V F++ +  +  GQ+ V
Sbjct: 297 CDWVSGHCPALKQA----LKAKVRYRQPEQPCQILSEKNGEIIVQFDEEQTAITPGQSVV 352

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
           FY  ++     LGG II+G   S
Sbjct: 353 FYEGET----CLGGAIITGRYHS 371


>gi|94676746|ref|YP_588863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166991122|sp|Q1LT51|MNMA_BAUCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94219896|gb|ABF14055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 368

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 192/375 (51%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDSSV A LL + GY V G+ ++ +        +  C   +D+ DA+ V
Sbjct: 5   NKKVIVGMSGGVDSSVSALLLLQQGYTVEGLFMKNWEEDD---HEQYCTVAKDLADAQAV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138
           C+ + +  +  ++   + + V   F + Y  G TP P + CN+ +KF   L    + LGA
Sbjct: 62  CNQLGIILHKVNFAAEYWDNVFEYFLAEYQVGRTPNPDILCNKNIKFKVFLDFATQNLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+  +     D   +  + R +D ++DQSYFL+    QQ+    FPLG + K 
Sbjct: 122 DYIATGHYVIRK-----DINGKSRLLRGLDNQKDQSYFLYTIGYQQMARCFFPLGKLNKL 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A + GL  A K DS  ICF+ + K  D++ R     A  G I+ ++ + +G H G
Sbjct: 177 RVREIAAKQGLVTASKKDSTGICFIGKRKLSDLLSRYI--SAKPGAIITVDNEYIGYHQG 234

Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           ++ YT+GQR+ LG+        +P +VV  D N + +I+        L  + +   ++ W
Sbjct: 235 LMYYTLGQRKKLGIGGTKNGSQDPWYVVDKDINHNLLIIAQGHNHPRLMSNGLIASKLYW 294

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
           +        +    +C VK R  Q  +   ++   ++ + VDF+     V  GQ+ VFY 
Sbjct: 295 VD----RTTLSTPLRCTVKTRYRQSDIGCLIKPIANNQLQVDFDYPVAAVTPGQSAVFYL 350

Query: 370 SDSNEARVLGGGIIS 384
           ++    + +GGG I 
Sbjct: 351 AE----QCIGGGTIE 361


>gi|293604355|ref|ZP_06686762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292817232|gb|EFF76306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 360

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 174/372 (46%), Gaps = 28/372 (7%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD+ DA  V D + V
Sbjct: 2   GMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAASVADLVGV 58

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA+ +ATGH
Sbjct: 59  EFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAEHIATGH 118

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R R    + G  +  + + +D  +DQSYFL    Q QL    FPLGD+ K  VR +A 
Sbjct: 119 YARVREVPAEGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTLFPLGDIHKTEVRRIAH 178

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E+GL  A K DS  ICF+ +  + + + R        G I+   GQ +GRH G+  YT+G
Sbjct: 179 EIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGPILTPEGQQVGRHEGLSFYTLG 236

Query: 266 QR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           QR          R       E  +V   D   + + V        L   ++  ++ +W+ 
Sbjct: 237 QRKGLGVGGVKGRQREDGTAEAWYVARKDLERNILYVVQGHDHPWLLSSQLQAQDASWVA 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSD 371
                 A         K R  Q      + +  DG + +DFE  +  V  GQ+ V Y  D
Sbjct: 297 GHPPAIASYG-----AKTRYRQADAACRLDQAADGTFALDFEVPQWAVTPGQSAVLYDGD 351

Query: 372 SNEARVLGGGII 383
                 LGGGII
Sbjct: 352 V----CLGGGII 359


>gi|319637829|ref|ZP_07992595.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102]
 gi|317400984|gb|EFV81639.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102]
          Length = 367

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 190/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ +     ++V +SGGVDSSV AALLK+ G+ + GV +Q +      +    C   QD 
Sbjct: 1   MNTHNTPANIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+++
Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +      ++      +   K R      P  ++  +D+ + + F++ +  V  GQ+ V Y
Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMADAPCTLRYLDDETIELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDV----CLGGGIIMSTDKP 362


>gi|225873266|ref|YP_002754725.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium capsulatum ATCC 51196]
 gi|259495822|sp|C1F792|MNMA_ACIC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225792803|gb|ACO32893.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 374

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/381 (40%), Positives = 211/381 (55%), Gaps = 28/381 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQD 72
           +  V VAMSGGVDSS VAA+L+ +GYD+IG+TLQL+N              +G CC+  D
Sbjct: 4   NNTVAVAMSGGVDSSTVAAMLREEGYDLIGLTLQLWNQRRLAGKDGMPEPVQGRCCSIDD 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           VYDARRV +T+ + +Y+ + +ERF + V+ PF S Y  G TP+PC  CN  +KF  LL  
Sbjct: 64  VYDARRVAETLGIPYYLVNEQERFESDVVRPFVSEYLHGRTPIPCSLCNNHLKFDQLLLR 123

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            RQ GAD +ATGHY R+     D  + R I+ RP D  +DQ++FLF  TQ+QL    FPL
Sbjct: 124 ARQFGADRIATGHYARNEY---DPARGRWILKRPADRSKDQTWFLFGLTQEQLSRTLFPL 180

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDIVH 247
           G   K  VR++A    L +A K DSQ+ICF+  G Y   +               G++V 
Sbjct: 181 GGYTKPEVREIAATHKLALAAKPDSQEICFIPNGDYKRFIDAYLDEQGESIPDSAGELVS 240

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G++LGRH GI N+T+GQR+GLGV    PL+V+ +D  S RV VG    L       R+
Sbjct: 241 TTGEVLGRHAGIHNFTVGQRKGLGVTAPNPLYVLQIDPASHRVTVGSDTELATETFRARD 300

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDG---VYVDFEKSEVGVASG 362
            NW+        +    +  VKIR   +P    V+  R  DG     + F++ +  V  G
Sbjct: 301 CNWISIAD----LTGERRAQVKIRHRHEPAWATVRPVRGADGTAEAEITFDEPQRAVTPG 356

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ VFY  D     V+GGG I
Sbjct: 357 QSAVFYDED----EVIGGGWI 373


>gi|313113898|ref|ZP_07799457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623777|gb|EFQ07173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 367

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 201/378 (53%), Gaps = 12/378 (3%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAG 70
           +         R ++AMSGGVDSSV A L+++ GYD  G+T++L  N         +CC+ 
Sbjct: 1   MTTQTPDSKPRALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSE 60

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+ DA  V   +++ + V D+   FR  +I  F   Y AG TP PC+DCN+ +KF  LL
Sbjct: 61  KDIEDAAEVAYAMDIPYEVLDFTADFREQIIEKFVRVYEAGGTPNPCIDCNKYMKFRHLL 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              R  G + + TGHY R      D+   R ++ + +D  +DQSY L+  TQ+QL  +R 
Sbjct: 121 DWARAHGMEYVVTGHYARVE---QDEATGRFLLKKGLDEGKDQSYVLYNLTQEQLAHIRL 177

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PLG + K  VR++A +     A K DSQDICFV  G Y   ++         GD +  +G
Sbjct: 178 PLGGLHKTEVREIAEQHKFVNARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDESG 237

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +++G HNG + YTIGQR+GLG+AMG P++V   D  ++ V VGP E L    +Y  E+NW
Sbjct: 238 RVVGPHNGAVRYTIGQRKGLGLAMGAPVYVCGKDMQANTVTVGPEEMLFDRIVYADEVNW 297

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           +        +    +   + R  Q      V   + G  ++F++ +     GQA V Y  
Sbjct: 298 IAI----PELTGPLRVTARTRYHQVEQAATVYPAECGFRLEFDQPQRAPTPGQAVVLYQG 353

Query: 371 DSNEARVLGGGIISGSKR 388
           D+    VLGGG I+  ++
Sbjct: 354 DT----VLGGGTITRVEK 367


>gi|289208445|ref|YP_003460511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. K90mix]
 gi|288944076|gb|ADC71775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. K90mix]
          Length = 373

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 189/381 (49%), Gaps = 29/381 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDS+V A+ L   GY V G+ ++ +     ++    C A  D   AR V  
Sbjct: 6   RVIVGLSGGVDSAVAASRLLEAGYRVEGLFMKNWEDDDDAE---YCAAEADFEMAREVAA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ E +R  V   F   Y AG TP P + CNR +KF   L   RQLGA  +
Sbjct: 63  CLEIPLHKANFAEDYRQRVFRHFLHEYEAGRTPNPDILCNREIKFRSFLDHARQLGAQWI 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R   G        +C   D  +DQ+YFL   TQ+QL    FPLGD+ K+ VR
Sbjct: 123 ATGHYARVRHLPG-----HSELCMAADANKDQTYFLHTLTQEQLRPALFPLGDIPKDQVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             ARE+GL    + DS  ICF+ + ++ D + +     A EG++    GQ++G H G++ 
Sbjct: 178 ARARELGLPNHARKDSTGICFIGERRFRDFLAQYL--RAPEGEMCTPEGQVVGHHQGLMF 235

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YT+GQR+GLG+         P +VV  D  S+R+IV        L    I    ++W+  
Sbjct: 236 YTLGQRQGLGIGGIDGFPEAPWYVVDKDLGSNRLIVAQDPRHPLLMSPEIETETVHWIH- 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                    G     ++R  Q   P  ++  D G V V F+  +     GQ+ VFY  D 
Sbjct: 295 ----RPPEPGRPVMARLRHRQPLQPCRLESVDGGRVRVRFDAPQRAATPGQSAVFYNGDV 350

Query: 373 NEARVLGGGIISGSKRSDAVE 393
                LGG +I  ++R+ A E
Sbjct: 351 ----CLGGAVI-ATRRTLASE 366


>gi|83319617|ref|YP_424495.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535669|sp|Q2SRW8|MNMA_MYCCT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83283503|gb|ABC01435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 375

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 189/383 (49%), Gaps = 23/383 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 2   KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINDDICPQEQD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V D +N+  +  D+ + + + V   F   Y    TP P + CN+ +KF   L+ 
Sbjct: 62  YLDAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              QL AD +A GHY +      +   ++  + +  D+ +DQ+YFL    Q QL    FP
Sbjct: 122 AINQLNADYIAMGHYAKVEF---NKTTKQYELIKASDINKDQTYFLSQLNQNQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L ++ KE VR +A E  L  A+K DS  ICF+ +  +   ++      +  GDIV +   
Sbjct: 179 LANLTKEQVRKIALEQNLITANKKDSTGICFIGERNFTSFLQNYIP--SQTGDIVDIKTN 236

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           ++LG+H GI+ YTIGQR+G+ +  M EP +V   D   + + V     +  L      + 
Sbjct: 237 KVLGKHIGIMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLYSTSCLVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           +INW+ D       V+ F+C  K R  Q    V V++ DD    V F+K    +  GQ  
Sbjct: 297 DINWILDISKYVDDVNQFECQAKFRYRQLDNKVVVKKIDDNNYKVMFKKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  D      LGG +I    +
Sbjct: 357 VFYLDDI----CLGGAVIDKVIK 375


>gi|325679422|ref|ZP_08159007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 8]
 gi|324109019|gb|EGC03250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 8]
          Length = 356

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 13/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+ AMSGGVDSS    LL   GY+V G T+ LYN+     R+ +CC+  DV DAR V
Sbjct: 3   KKRVLAAMSGGVDSSAAVKLLLDKGYEVAGATMHLYNNEDIGIREKNCCSLNDVEDARLV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +  +VF++ + F+  V+  F ++Y +G TP PC++CN+ +KF   L     LG D
Sbjct: 63  ALKLGIDFHVFNFSDEFKMRVMDDFVNTYLSGGTPNPCIECNKHLKFGRFLERAELLGFD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+ S     D+   R ++ R  D  +DQSY L+  TQ QL    FP+GDM K  
Sbjct: 123 YIATGHYVTSHY---DEASGRWLLKRSADRAKDQSYVLYGMTQHQLAHTIFPVGDMNKTD 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R LA E GL  A K DSQDICF+  G Y   +    AG    GDIV  +G +LG+H G+
Sbjct: 180 IRALAEENGLINAHKRDSQDICFIPDGDYAKFITE-AAGEQPAGDIVLSDGTVLGKHRGL 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YT+GQRRG+GV+  EPLFV   D   +++I+G  E L    +   E+N++      D 
Sbjct: 239 IHYTVGQRRGVGVSYSEPLFVTSKDMAQNKLIMGTAEQLCSKTLTAGEVNFITV----DK 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    KC  + R  Q  VP  V Q +++ V V+F+K    ++ GQA VFY  +     V+
Sbjct: 295 LTSPLKCTAQTRYHQQDVPCTVFQIDENTVKVEFDKPHKAISKGQAVVFYDGE----YVV 350

Query: 379 GGGII 383
           GGG I
Sbjct: 351 GGGKI 355


>gi|89054998|ref|YP_510449.1| tRNA-specific 2-thiouridylase MnmA [Jannaschia sp. CCS1]
 gi|122498420|sp|Q28PD8|MNMA_JANSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88864547|gb|ABD55424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jannaschia sp. CCS1]
          Length = 380

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/386 (49%), Positives = 253/386 (65%), Gaps = 12/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  +  LNSL   K P D RVVVAMSGGVDSS VAA L  +GYDV+GVTLQLY+   A
Sbjct: 1   MALDRSDGLNSLGFAKAPADTRVVVAMSGGVDSSAVAAQLADEGYDVVGVTLQLYDHGAA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG+D++DA RV +T+   HYV DYE  F++AVI  FA SY AG TP+PC+ C
Sbjct: 61  LAKKGACCAGRDIHDAARVAETMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G+ +  +    D  RDQSYFLF+T
Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GREKAELHSAADAARDQSYFLFST 175

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            Q+QL  LRFPLG ++ K   R LA + GL +ADK DSQDICFV  G Y  V++++  G 
Sbjct: 176 KQEQLDFLRFPLGHLESKAETRALAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV ++G +L  H G+I+YTIGQRRGLG+  + +PL+VV LD ++ RVIVGP+E L
Sbjct: 236 ADPGEIVDIDGNVLAMHRGVIHYTIGQRRGLGIGGLDDPLYVVKLDPDTRRVIVGPKEML 295

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
               + +REINWLGD  F+      ++  VKIRS++ P    ++  +     V+   +E 
Sbjct: 296 STRTVPVREINWLGDTPFDSQ--QEWQMDVKIRSTRPPRGAVIRPVSATEAEVELIVAEE 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  +    R+ GGG I
Sbjct: 354 GVSPGQACVFYAPE--GGRIFGGGWI 377


>gi|291556233|emb|CBL33350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum V10Sc8a]
          Length = 358

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 145/368 (39%), Positives = 204/368 (55%), Gaps = 19/368 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +AMSGGVDSSV   LLK   YDV G TL+L++SR  +   G C +  D+ DA+ +  
Sbjct: 3   KLAIAMSGGVDSSVALVLLKDK-YDVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V HY+ D  E F   V   F  SY +G TP PCV+CN T+KF  LL   ++ G + +
Sbjct: 61  KFGVPHYLLDMRELFSKTVQKSFTESYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDL-----ERDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY+RS     D+   R ++ + ++       +DQSY L+  +QQQL    FPLG+M 
Sbjct: 121 ATGHYVRSCY---DEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A + GL  +DK DSQDICFV  G Y   ++R       +GD +  NG ++GRH
Sbjct: 178 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+I YTIGQRRG+G   G+P++V+  + +++ V +G  E L    +Y   +NW+     
Sbjct: 238 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIAFEYP 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E      FKC  K R  Q   P  V     + V V F++    V  GQ  VFY  D    
Sbjct: 298 ES----EFKCKAKTRYRQTEQPCTVYPQGRNTVRVVFDEKIRAVTPGQHVVFYDGDI--- 350

Query: 376 RVLGGGII 383
            VLGGG+I
Sbjct: 351 -VLGGGVI 357


>gi|294668754|ref|ZP_06733847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309271|gb|EFE50514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 367

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 188/381 (49%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ +     ++V +SGGVDSSV AALLK+ GY V G+ +Q +      +    C   QD 
Sbjct: 1   MNIDHTQQNIIVGLSGGVDSSVTAALLKQQGYQVRGIFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 IEQGADTIATGHYARKEVRNG-----MHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 DLEKPEVRRLAFEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +       +      +   K R      P  ++  +D+ V + F++ +  V  GQ+ V Y
Sbjct: 291 FTLPERPREG-----RYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDV----CLGGGIIMSTDKP 362


>gi|121596352|ref|YP_988248.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. JS42]
 gi|205811052|sp|A1WD47|MNMA_ACISJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120608432|gb|ABM44172.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax sp. JS42]
          Length = 379

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/392 (31%), Positives = 183/392 (46%), Gaps = 42/392 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C + QD  DA  
Sbjct: 2   KKHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEF---CSSRQDFLDAAS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA
Sbjct: 59  VADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R R    +       + + +D  +DQSYFL    Q QL    FP+G++ K 
Sbjct: 119 EKIATGHYARVR---QNPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKT 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A ++GL  A K DS  ICF+ +  + + + R        G I+   G+ LGRH G
Sbjct: 176 EVRRIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQHA--PGPILDDRGRKLGRHVG 233

Query: 259 IINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSS--RVIVGP- 294
           +  YT+GQR+GLG+                         P FV   +  ++  RV+ G  
Sbjct: 234 LSFYTLGQRQGLGIGGVKEKGAGAKAPSGQPVRGAGDHAPWFVARKELETNTLRVVQGHE 293

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353
              L  HR+  ++ +W+              C  K R  Q      V     D   + F 
Sbjct: 294 HPWLLSHRLDAQDASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFNLQFP 348

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           +++  V  GQ+ V Y  +      LGGG+I+ 
Sbjct: 349 EAQWAVTPGQSAVLYDGEV----CLGGGVIAA 376


>gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
           R551-3]
 gi|229487423|sp|B4SIN4|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas maltophilia R551-3]
          Length = 380

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 185/393 (47%), Gaps = 32/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A  L + G  V G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGECRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 61  LLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R           + ++ R  D  +DQSYFL    QQQL    FP+GD++K  +R
Sbjct: 121 ATGHYARVAQR-----GHQWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKTDLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
            +AR++ L    K DS  ICF+ +  + + + R     A  G I+   +G ++  H G+ 
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLG 312
            +T+GQR GL +         P +VV  D  S+ + V        +  +R+     +W+ 
Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSTWMLSNRLRSETAHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      F+C  + R  Q   P  V+  DDG V V F + +  V  GQ+ V Y  D
Sbjct: 294 GA----PPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                 LGG +I+ +   DA  E  L      F
Sbjct: 350 V----CLGGAVIAAT---DAPLEQRLRTTPSPF 375


>gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
           K279a]
 gi|205828975|sp|B2FQX2|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190012202|emb|CAQ45825.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas maltophilia K279a]
          Length = 380

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 185/393 (47%), Gaps = 32/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV A  L + G  V G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 61  LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R           + ++ R  D  +DQSYFL    Q+QL    FP+GD++K  +R
Sbjct: 121 ATGHYARVTQR-----GHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
            +AR++ L    K DS  ICF+ +  + + + R     A  G I+   +G ++  H G+ 
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233

Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLG 312
            +T+GQR GL +         P +VV  D  S+ + V      + +   R+     +W+ 
Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIA 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                      F+C  + R  Q   P  VQ  DDG V V F + +  V  GQ+ V Y  D
Sbjct: 294 GS----PPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349

Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                 LGG +I+ +   DA  E  L      F
Sbjct: 350 V----CLGGAVIAAT---DAPLEQRLRTTPSPF 375


>gi|291542284|emb|CBL15394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus bromii L2-63]
          Length = 357

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 138/364 (37%), Positives = 208/364 (57%), Gaps = 13/364 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV A L K  GYD  G+TL+L+++     KR+ +CC+  D+ DARRVC
Sbjct: 4   KALIAMSGGVDSSVAAFLTKDMGYDATGITLKLFDNEDIGEKREKTCCSLDDIDDARRVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +YV+++++ F+  VI  F  +Y  G TP PC+DCNR +KF  L+    +L  D 
Sbjct: 64  LKLGIPYYVYNFKDSFKENVIDRFIRAYENGTTPNPCIDCNRFIKFEKLIRRAEELDFDC 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY       G D   R ++ + +D  +DQSY L+  TQ+QL     PLG   KE V
Sbjct: 124 VVTGHYSTIEYDKGAD---RYLLKKSVDSTKDQSYVLYCLTQRQLAKTLLPLGTYTKEKV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A E+GL  A K DSQDICFV  G Y   +++        G+ V   G ILG H GII
Sbjct: 181 REIANELGLINARKHDSQDICFVPDGDYAKFIEQYTGRTYPNGNFVDTKGHILGEHKGII 240

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GLG+A+  P++V   + +++ VI+     L    +Y  +IN +      D +
Sbjct: 241 RYTVGQRKGLGLALPHPMYVKEKNLDTNEVILCDNNELFSKELYATDINLITC----DKI 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K   ++R SQ      V++ DD  +++ F++ +  ++ GQA V Y  +     V+G
Sbjct: 297 DKPIKVKARVRYSQPEKDAIVEQIDDNTLHIVFDEPQRAISKGQAAVLYDGE----YVVG 352

Query: 380 GGII 383
           GG I
Sbjct: 353 GGTI 356


>gi|167749316|ref|ZP_02421443.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702]
 gi|167657707|gb|EDS01837.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702]
          Length = 387

 Score =  449 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 205/368 (55%), Gaps = 19/368 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +AMSGGVDSSV   LLK   Y+V G TL+L++SR  +   G C +  D+ DA+ +  
Sbjct: 32  KLAIAMSGGVDSSVALVLLKDK-YEVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 89

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V HY+ D  + F + V   F  SY +G TP PCV+CN T+KF  LL   ++ G + +
Sbjct: 90  KFGVPHYLLDMRDLFSDTVQKSFVQSYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 149

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDL-----ERDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY+RS     D+   R ++ + ++       +DQSY L+  +QQQL    FPLG+M 
Sbjct: 150 ATGHYVRSCY---DEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 206

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R +A + GL  +DK DSQDICFV  G Y   ++R       +GD +  NG ++GRH
Sbjct: 207 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 266

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+I YTIGQRRG+G   G+P++V+  + +++ V +G  E L    +Y   +NW+     
Sbjct: 267 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIAFEYP 326

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           E      FKC  K R  Q   P  V     + V V F++    V  GQ  VFY  D    
Sbjct: 327 ES----EFKCRAKTRYRQTEQPCTVYPQGRNTVRVVFDEKIRAVTPGQHVVFYDGDI--- 379

Query: 376 RVLGGGII 383
            VLGGG+I
Sbjct: 380 -VLGGGVI 386


>gi|302871531|ref|YP_003840167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574390|gb|ADL42181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 360

 Score =  449 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YVF+ +E F+  VI  F   Y  G TP PC+ CNR +KF   L     LG
Sbjct: 62  RVAHILDIPYYVFNMKEDFKKEVINYFIDEYIKGRTPNPCIMCNRKIKFELFLKRAMVLG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D+   R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+  
Sbjct: 179 DEVRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI----LF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +       V    ++ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKIRYTAKETKTKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|117924260|ref|YP_864877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetococcus sp. MC-1]
 gi|205816907|sp|A0L678|MNMA_MAGSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117608016|gb|ABK43471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetococcus sp. MC-1]
          Length = 358

 Score =  449 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/367 (43%), Positives = 214/367 (58%), Gaps = 14/367 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDAR 77
           +  RV VAMSGGVDSS  AALL   GY+VIG+T+QL++          SCCA  D+YDAR
Sbjct: 3   QPQRVAVAMSGGVDSSATAALLVEQGYEVIGLTMQLWDHSSPKVAGSRSCCALDDLYDAR 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V  T+ + +YV +YE  FR AV+  F  +YAAG+TP PCV CN+ +KF  LL     LG
Sbjct: 63  QVAQTLGIPYYVVNYEADFRQAVVDDFIQTYAAGQTPNPCVRCNQILKFDLLLKKALALG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LATGHY   R    +D +    + +  D  +DQSYFLF TT  QL  +RFPLG+M K
Sbjct: 123 ADFLATGHYAIRR----EDAQGVPQLWQGSDPAKDQSYFLFTTTMAQLAHVRFPLGEMDK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           +  R LA+  GL ++ K +SQD+CFV  G Y     +    +   G IV   G  LG+H 
Sbjct: 179 QQTRQLAQRFGLHLSTKQESQDVCFVPDGDYSAFFAKQAPHLLTPGAIVDQQGHSLGQHK 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YT+GQR+GLG+A   PL+V+ LD   ++VIVGP E+L   ++ L  +NWL      
Sbjct: 239 GLGCYTVGQRKGLGIAHPTPLYVLALDAPHNQVIVGPAEALYQQQLTLHHVNWL----EP 294

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               + F    KIR +  PV   V+   D G  + F + +  +  GQACVFY      AR
Sbjct: 295 TPPTEPFASMAKIRYAAPPVEARVEPLPDGGAQIYFNQPQRAITPGQACVFYDG----AR 350

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 351 VVGGGWI 357


>gi|218768524|ref|YP_002343036.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis Z2491]
 gi|11277501|pir||H81798 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) NMA1744 [imported] - Neisseria meningitidis
           (strain Z2491 serogroup A)
 gi|121052532|emb|CAM08872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis Z2491]
          Length = 383

 Score =  449 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 182/383 (47%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 15  LRMNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLRE 307
            +G H G++ YT+GQR+       GEP FV   D   +   V+ G     L    + + +
Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +++      ++          K R      P  ++  +D+ V + F++ +  V  GQ+ V
Sbjct: 305 LSFTLPERPKEG-----HYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDGDI----CLGGGIIQSTDKP 378


>gi|33593833|ref|NP_881477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella pertussis Tohama I]
 gi|33600935|ref|NP_888495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella bronchiseptica RB50]
 gi|81423057|sp|Q7U359|MNMA_BORPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81423064|sp|Q7U387|MNMA_BORBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33563906|emb|CAE43165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella pertussis Tohama I]
 gi|33568535|emb|CAE32447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella bronchiseptica RB50]
          Length = 371

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 180/385 (46%), Gaps = 30/385 (7%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  NP +  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD
Sbjct: 1   MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L  
Sbjct: 58  LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGA+ +ATGHY R R      G  R  + + +D  +DQSYFL    Q QL    FPL
Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGP-RHQLLKALDDTKDQSYFLHRLNQVQLARTLFPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A E+GL  A K DS  ICF+ +  + + + R     +  G I+   GQ 
Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234

Query: 253 LGRHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLE 299
           +G H+G+  YT+GQR          R       E  +    D   + + V        L 
Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVG 358
             ++  ++ +W+                 K R  Q      + Q   +   + FE+++  
Sbjct: 295 SAQLQAQDASWIAGEPPAAGAYG-----AKTRYRQADAACRLDQAGGERFALAFEQAQWA 349

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           V  GQ+ V Y  +      LGGGII
Sbjct: 350 VTPGQSAVLYDGEV----CLGGGII 370


>gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Dichelobacter nodosus VCS1703A]
 gi|205816915|sp|A5EVB4|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Dichelobacter nodosus VCS1703A]
          Length = 376

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 199/378 (52%), Gaps = 26/378 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + P+   + V MSGGVDSSV A LLK+ GYDV G+ ++ +     +   G C A +D+ D
Sbjct: 7   QAPQGSTIAVGMSGGVDSSVTAYLLKKQGYDVFGIFMKNWEE---TFSSGYCSAAEDLED 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR VC T+++  +  ++ +++ + V   F   Y AG TP P V CNR +KF++L    +Q
Sbjct: 64  ARDVCQTLDIPLHTVNFVQQYHDRVFQLFLDEYRAGRTPNPDVLCNREIKFAELALYAQQ 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY +              + + +D ++DQSYFL   T  QL    FPLG +
Sbjct: 124 LGADFLATGHYAQRLQSD----NHEAALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGL 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K+ VR +ARE GL   DK DS  ICF+ +  +   +++     A +G +   NG+I+G 
Sbjct: 180 QKKQVRAIARERGLTTFDKKDSTGICFIGERPFRAFLQQYLP--AQKGLMKTPNGEIVGE 237

Query: 256 HNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP--RESLEVHRIYLREI 308
           H G++ YTIGQR+     G+  A  EP +V+  D +++ +IVG      L    +   ++
Sbjct: 238 HMGLMYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLIAGQL 297

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           +WL      +A + G     K R  Q      V    DG + + FE+ +  +  GQ  V 
Sbjct: 298 SWLN-----EAPIAGRFYHAKTRYRQSDQKCRVDYAADGRLQLTFEQLQRAITLGQYAVI 352

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  +    R LGGG+I  
Sbjct: 353 YDGE----RCLGGGVIEA 366


>gi|291547860|emb|CBL20968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus sp. SR1/5]
          Length = 362

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 205/371 (55%), Gaps = 13/371 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRV 79
            +V++AMSGGVDSSV A L K  G + IG T++LYN+      R+ +CC+  DV DAR V
Sbjct: 2   KKVIIAMSGGVDSSVAALLTKESGDECIGATMKLYNNEDIGVHREKTCCSLDDVEDARSV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YVF++   F   V+  F  +Y  G TP PC+DCNR +KF  +    +++G D
Sbjct: 62  AYQMDMPYYVFNFTADFHTEVMDRFVDAYENGCTPNPCIDCNRYLKFDKMFHRMQEIGYD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R      D+ + R ++ + +D  +DQSY L+  TQ+QL  ++ PLG ++K+ 
Sbjct: 122 YIVTGHYARVEY---DEKRDRYLLKKAVDDTKDQSYVLYMLTQEQLAHVKLPLGGLRKDQ 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A + G   A K DSQDICFV  G Y   +++       EGD V   G  +GRH GI
Sbjct: 179 VRVIAEKHGFINARKHDSQDICFVPDGDYAKFIEKYTGKKTPEGDFVDKEGNYIGRHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQRRGLG+     L+V  +   ++ V++G  E L    +    +N +      D+
Sbjct: 239 IHYTIGQRRGLGIPAASRLYVCEISPKTNTVVLGDNEDLFSSELEADNVNLISV----DS 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR      P    +  DG+ +V F++ +  +  GQA V Y  D     V+
Sbjct: 295 LTEPKRVTAKIRYRHKEQPATAWQTPDGILHVKFDEPQRAITKGQAVVMYDGD----EVV 350

Query: 379 GGGIISGSKRS 389
           GGG+I+     
Sbjct: 351 GGGVINKIYSQ 361


>gi|309378502|emb|CBX22855.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 383

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 181/383 (47%), Gaps = 24/383 (6%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   Q
Sbjct: 15  LRMNTTSNPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 72  DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FP
Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+
Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 244

Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
            +G H G++ YT+GQR+       GEP FV   D   + +IV        L    + + +
Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +++      ++          K R      P  ++  +D+   + F++ +  V  GQ+ V
Sbjct: 305 LSFTLPERPKEG-----HYTCKTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAV 359

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D      LGGGII  + + 
Sbjct: 360 LYDGDI----CLGGGIIQTTDKP 378


>gi|170758983|ref|YP_001788227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|205810606|sp|B1KZJ2|MNMA2_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|169405972|gb|ACA54383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 353

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +AMSGGVDSSV A +LK  GY+VIG+ + L+   +        C      DARRV + 
Sbjct: 6   VALAMSGGVDSSVSAYILKERGYEVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++  ++ +  + F+  VI  F   Y +G TP PCV CN+T+KF    +  ++ GAD +A
Sbjct: 61  LDIPFHIINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++  RR+++ +  D ++DQ+Y ++   Q QL     P G+ +KE +R+
Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GLD+ +K DSQ+ICF+    +   +KR       EG+ V   G+I+G+H GII Y
Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A+G+P +V+ ++  ++ V++G  E +    +  +++N++      D +  
Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFI----PFDKLEK 291

Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   K+R S  P     +   ++ V V F+  +  +  GQ+ V Y  D     ++GGG
Sbjct: 292 SMELEAKVRYSAKPSKATIIPLGNNKVKVVFQNKQRAITKGQSVVLYDKD----MLVGGG 347

Query: 382 IIS 384
           II 
Sbjct: 348 IIE 350


>gi|167042070|gb|ABZ06805.1| putative tRNA methyl transferase [uncultured marine microorganism
           HF4000_141I21]
          Length = 382

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 183/385 (47%), Positives = 257/385 (66%), Gaps = 10/385 (2%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           ++ + NSL   K PKD +VVVAMSGGVDSS VA L+K+DGYDVIG+TL+LY+  K+SK  
Sbjct: 4   KSEKFNSLGFLKRPKDTKVVVAMSGGVDSSTVAGLMKKDGYDVIGITLKLYDDAKSSKES 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             CCAGQD+ DA+RV   +N+ H +  Y+++F+  VI  F  SY AGETP+PCV CN+TV
Sbjct: 64  RQCCAGQDILDAKRVSQQLNIDHKILYYQKKFKKDVIDSFIDSYVAGETPIPCVQCNQTV 123

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF DL S   ++ AD L TGHY+      G+       M R +DL RDQSYFLF+TTQ+Q
Sbjct: 124 KFRDLYSYALEMKADALITGHYVNRIKKNGN-----AEMYRAIDLTRDQSYFLFSTTQEQ 178

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  LRFPLG M+K+  R +A ++ L++ADK DSQDICFV  G Y  ++K+       +G+
Sbjct: 179 LNFLRFPLGQMQKKETRKIASKLKLNVADKPDSQDICFVPNGNYASIIKKYRPESFQKGN 238

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           I+ + G I+G+H+GIIN+TIGQR+G+G+A  EPL+V+ ++  ++ VIVG R +L + +IY
Sbjct: 239 ILDIVGNIVGKHDGIINFTIGQRKGIGIAYKEPLYVININAKTNEVIVGNRVALAIKKIY 298

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           L+ +N L D    +        F+K+RS+   V   V  ND G  V+ E+ E G++ GQA
Sbjct: 299 LKNLNLLSDAEEYNN-----NLFIKVRSTGRLVKAKVNLNDTGAEVNLEELETGISPGQA 353

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
           CVFY+ +    +VLGGG I  ++ +
Sbjct: 354 CVFYSKNQFGDKVLGGGWIVKTENN 378


>gi|33597091|ref|NP_884734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella parapertussis 12822]
 gi|81423061|sp|Q7U375|MNMA_BORPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33566542|emb|CAE37798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella parapertussis]
          Length = 371

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 180/385 (46%), Gaps = 30/385 (7%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  NP +  RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ +     S+    C   QD
Sbjct: 1   MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  V D + V     ++   +++ V   F   Y+AG TP P V CN  +KF   L  
Sbjct: 58  LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGA+ +ATGHY R R      G  R  + + +D  +DQSYFL    Q QL    FPL
Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGP-RHQLLKALDDTKDQSYFLHRLNQAQLARTLFPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A E+GL  A K DS  ICF+ +  + + + R     +  G I+   GQ 
Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234

Query: 253 LGRHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLE 299
           +G H+G+  YT+GQR          R       E  +    D   + + V        L 
Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVG 358
             ++  ++ +W+                 K R  Q      + Q   +   + FE+++  
Sbjct: 295 SAQLQAQDASWIAGEPPAAGAYG-----AKTRYRQVDAACRLDQAGGERFALAFEQAQWA 349

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           V  GQ+ V Y  +      LGGGII
Sbjct: 350 VTPGQSAVLYDGEV----CLGGGII 370


>gi|283781959|ref|YP_003372714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Pirellula staleyi DSM 6068]
 gi|283440412|gb|ADB18854.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Pirellula staleyi DSM 6068]
          Length = 373

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 157/381 (41%), Positives = 213/381 (55%), Gaps = 28/381 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----------------RKASKRK 64
           R+V+AMSGGVDSSV AA+L R G++VIGV ++                     ++ S  K
Sbjct: 3   RIVLAMSGGVDSSVAAAILTRAGHEVIGVFMRHGEEAQAACAVDAPGFQLPIFKERSDHK 62

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
             CC+  D  DARRV D +++  Y  + +  FR  +I  F   Y  G TP PCV CN  +
Sbjct: 63  QGCCSASDAEDARRVADRLDIPFYALNLQSEFR-QIIDYFIDEYTVGRTPNPCVQCNNWL 121

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF  L      +GA+ +ATGHY R     GD       +CR +D  +DQSY LF   ++ 
Sbjct: 122 KFGKLFDYADSVGAEFVATGHYARLAQIDGD-----LALCRGVDDGKDQSYVLFGIKKEL 176

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +  P+GD  K  +R LA E+GL +ADK DSQ+ICFV  GK+ + V+     I   G+
Sbjct: 177 LPRMLLPIGDYYKPQIRKLAHEIGLRVADKRDSQEICFVTSGKHDEFVRARRPDIDTRGE 236

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV + G++LG+H GI  +TIGQRRGLGVA+GE  FVV ++ ++ RV+VG R+ L    + 
Sbjct: 237 IVTMEGKVLGQHAGIERFTIGQRRGLGVALGERAFVVRIEPDTHRVVVGTRDDLARTALT 296

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQ 363
               NW        A+ + F+C  KIR + DP P   V+  DD + VDF++   GVA GQ
Sbjct: 297 AANCNWHTTKSPVGAIGEPFRCEAKIRYNSDPAPATAVRLTDDRLQVDFDEPRHGVAPGQ 356

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           A V Y  D    RVLGGG I 
Sbjct: 357 AVVVYDGD----RVLGGGWIE 373


>gi|331703443|ref|YP_004400130.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801998|emb|CBW54152.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 384

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 191/383 (49%), Gaps = 23/383 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 11  KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINNDICPQEQD 70

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V D +N+  +  D+ + + + V   F   Y    TP P + CN+ +KF   L+ 
Sbjct: 71  FLDAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 130

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              QL AD +A GHY +      +   ++  + +  D  +DQ+YFL    Q QL    FP
Sbjct: 131 AINQLNADYIAMGHYAKVEF---NKTTKQYELIKASDTNKDQTYFLSQLNQNQLSKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L ++ KE VR +A E  L  A+K DS  ICF+ +  + D ++      +  GDIV +   
Sbjct: 188 LANLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIP--SQTGDIVDIKTN 245

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           ++LG+H GI+ YTIGQR+G+ +  M EP +V   D     + V     +  L     ++ 
Sbjct: 246 KVLGKHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCSTSDQSYLYSTSCFVN 305

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           +INW+ D     + V+ FKC  K R  Q+   V V++ DD    V FEK    +  GQ  
Sbjct: 306 DINWILDLSKYVSDVNEFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 365

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  D      LGG +I    +
Sbjct: 366 VFYLDDI----CLGGAVIDKVVK 384


>gi|205822192|sp|A9M0Y5|MNMA_NEIM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|312622080|ref|YP_004023693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202547|gb|ADQ45874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 360

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 203/370 (54%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG
Sbjct: 62  RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+  
Sbjct: 179 DEVRKLAEKFNLPVARKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFI----PF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +       V    ++ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKIRYTAKEAKAKVIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|154484582|ref|ZP_02027030.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC
           27560]
 gi|149734430|gb|EDM50347.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC
           27560]
          Length = 358

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 200/366 (54%), Gaps = 13/366 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
            + ++AMSGGVDSSV A  +K  GYD IGVT++LY++   +  ++ +CC+  DV DAR V
Sbjct: 2   KKALIAMSGGVDSSVAAVFMKEKGYDPIGVTMKLYDNEDINMSKEKTCCSLSDVEDARSV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +   +YVF+++  F+  VI  F   Y  G TP PC+DCNR +KF +L    + LG D
Sbjct: 62  AYKVGFPYYVFNFKAEFKEKVIDKFVGCYMCGMTPNPCIDCNRYLKFEELYRRAKALGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TGHY R R    D+   +  + + +D  +DQSY L+  TQ+QL    FPLG+  K+ 
Sbjct: 122 VIVTGHYARIRF---DEATGKYQLMKGIDDSKDQSYVLYHMTQEQLAHTMFPLGEYTKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R  A E GL  ADK DSQDICF+  G +   ++        +G+ + +NG+++G+HNG 
Sbjct: 179 IRKKAAETGLINADKHDSQDICFIPDGNHMKFIEEYTHKKVGKGNFLDINGKVIGQHNGY 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQR+G+ V      +V+ +   ++ V+VG  + L    +   + NW+      +A
Sbjct: 239 YRYTVGQRKGINVNRDGKHYVLEIRPETNEVVVGRNKDLFTEELVATDFNWISG----EA 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                K   + R  Q       +  ++G V V F++    +  GQ+ V Y  D     VL
Sbjct: 295 PTGEIKVSGRTRYHQPLTEGVAKVLENGDVKVSFDEPIRAITKGQSVVLYDGDV----VL 350

Query: 379 GGGIIS 384
           GGG I 
Sbjct: 351 GGGTIK 356


>gi|189183712|ref|YP_001937497.1| tRNA-specific 2-thiouridylase MnmA [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180483|dbj|BAG40263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 369

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/379 (46%), Positives = 235/379 (62%), Gaps = 13/379 (3%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+L    +   +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN   A  RKG+CCAGQ
Sbjct: 2   LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDA+ V + + + HYV +Y+++F+ +VI  F  SY  GETPLPCV CN++VKF DLL+
Sbjct: 62  DIYDAKFVANQLQIPHYVLNYKDKFKKSVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + L AD L TGHY+R       D      + + +D ++DQSYFLFATT+ QL  L FP
Sbjct: 122 FAKDLQADALVTGHYVRRI-----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG+M K+  R  A   GL IADK DSQDICFV  G Y +VV R+       G IVH++G 
Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGSYHNVVARLKPNAKKPGKIVHIDGY 236

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ILG H GIIN+TIGQRR +G++  +PL+V+ +D   + V VGP   L      +  +NWL
Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
           G G   + +V+     VK+RS+   V   +    +  V V   + E  +A GQACV Y  
Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVQAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353

Query: 371 DSNEARVLGGGIISGSKRS 389
           D     VLGGG I+  +  
Sbjct: 354 D----LVLGGGWIAKEQTQ 368


>gi|254448740|ref|ZP_05062197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium HTCC5015]
 gi|198261581|gb|EDY85869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium HTCC5015]
          Length = 359

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 180/374 (48%), Gaps = 26/374 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A  L   GY V G+ ++ +           C A  D+ DA++VCD + + 
Sbjct: 1   MSGGVDSSVTALTLLEQGYHVEGLFMKNWEEEDPD--SAYCPALIDMKDAQQVCDELEIP 58

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            +  ++ + + + V   F   Y+AG TP P V CN+ +KF   L     LGAD +ATGHY
Sbjct: 59  LHKVNFSKEYWDRVFQHFLDEYSAGRTPNPDVMCNKEIKFKAFLDHALGLGADYIATGHY 118

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R      DD   R  + +  D  +DQSYFL    Q +L    FP+G+M K  VR++A  
Sbjct: 119 VRRV----DDEDGRVHLYQGADKNKDQSYFLHTLGQAELSRALFPIGEMDKSHVREMAMN 174

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT--- 263
            G D  +K DS  ICF+ + ++ D + +     A  G +  L G +LG HNG++ YT   
Sbjct: 175 AGFDNHEKKDSTGICFIGERRFRDFLSQYLP--AQPGKVEDLEGTVLGDHNGLMYYTIGQ 232

Query: 264 --IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
                  GL  + GEP +VV  D   + + V       +L    +   ++ W+       
Sbjct: 233 RQGIGIGGLRNSDGEPWYVVEKDLERNVLKVAQGSEHPALFKTHLDASQLYWVN-----Q 287

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A     +C  KIR  Q   P  +++ D     V F++ +  +  GQ+ VFY+ +      
Sbjct: 288 APDAPLRCEAKIRYRQTQQPCTIEQIDGSDAVVVFDEPQRAITEGQSVVFYSGED----C 343

Query: 378 LGGGIISGSKRSDA 391
           LGGGII  +   D 
Sbjct: 344 LGGGIIERAFNGDQ 357


>gi|163794310|ref|ZP_02188282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium BAL199]
 gi|159180478|gb|EDP64999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium BAL199]
          Length = 394

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 206/384 (53%), Positives = 254/384 (66%), Gaps = 19/384 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L L       RVVVAMSGGVDSSV AALLK  GYDV+G+TLQLY+   A  RKG+CCAG 
Sbjct: 10  LGLPGPRSARRVVVAMSGGVDSSVTAALLKEAGYDVVGITLQLYDHGAAVARKGACCAGS 69

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D++DAR V + + + HYV DYE RFR +VI  FA SY  GETP+PCV CN+TVKF DLL+
Sbjct: 70  DIHDARTVAERLGIPHYVLDYESRFRESVIDDFADSYLRGETPIPCVRCNQTVKFRDLLT 129

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R LGA+ LATGHY+R  L  G DG     + R +D  +DQSYFLFATT +QL  LRFP
Sbjct: 130 TARDLGAEALATGHYVRRVL--GPDGPE---LHRAVDPGKDQSYFLFATTPEQLAFLRFP 184

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG M KE+ RD AR +GL + DK DSQDICFV  G Y +VVK++  G A  GDIVHL+G 
Sbjct: 185 LGSMSKEATRDEARRLGLVVQDKPDSQDICFVPNGNYAEVVKKLRPGAADPGDIVHLDGT 244

Query: 252 ILGRHNGIINYTIGQRRGL---------GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +LG+H+G+I+YT+GQRRG+         G A  +PL+VV LD ++ RVIVGPRE+L    
Sbjct: 245 VLGQHDGVIHYTVGQRRGIGVGGRRGAEGEAATDPLYVVRLDPDARRVIVGPREALAAET 304

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVAS 361
           +   E+NWLG          G +  VK+RS Q PV   V  +   G  V  ++ + GV++
Sbjct: 305 VLAGEVNWLGAD--GGVPESGARAQVKLRSVQAPVTATVYGDAAGGARVVLDQPQYGVSA 362

Query: 362 GQACVFYTSDSNEARVLGGGIISG 385
           GQA VFY  D   ARVLGGG I G
Sbjct: 363 GQAAVFYGED--GARVLGGGWIRG 384


>gi|94498089|ref|ZP_01304652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. SKA58]
 gi|94422524|gb|EAT07562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. SKA58]
          Length = 368

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/384 (49%), Positives = 242/384 (63%), Gaps = 21/384 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             L +     R+VVAMSGGVDSSVVAAL  + G +VIGVTLQLY+   A  R GSCCAGQ
Sbjct: 5   FQLAEPRDQRRIVVAMSGGVDSSVVAALAAKTGAEVIGVTLQLYDHGAAVGRTGSCCAGQ 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D I ++HYVFDYE RFR++VI  FA  Y AG TP+PCV CN  VKF+DL  
Sbjct: 65  DIRDARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQ 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R       +G     + R  D  RDQSYFLFATTQ QL  LRFP
Sbjct: 125 IARDLGADCLATGHYVRRV-----EGAAGAELHRAADPARDQSYFLFATTQAQLDYLRFP 179

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K DSQDICFV  G Y  +V+++       G+IVH++G+
Sbjct: 180 LGGLPKSQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGEIVHVDGR 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++GRH G+I+YT+GQR+GL +    EPL+VV LD  + RVIVGP+ +L V    L +INW
Sbjct: 240 VMGRHRGLIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSGALLSDINW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           LG                K+RS   PVP  ++ +     + F+  E GVA GQA V Y  
Sbjct: 300 LGGDFAGP-------LTAKVRSMARPVPARLEGD----RLIFDAPEYGVAPGQAAVLYAG 348

Query: 371 DSNEARVLGGGIISGSKRSDAVEE 394
           D    RVLGGG I+ ++ + A   
Sbjct: 349 D----RVLGGGWIASTQGAMAQAA 368


>gi|167644970|ref|YP_001682633.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter sp. K31]
 gi|205811623|sp|B0SWD8|MNMA_CAUSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167347400|gb|ABZ70135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter sp. K31]
          Length = 409

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 198/378 (52%), Positives = 254/378 (67%), Gaps = 9/378 (2%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+V AMSGGVDS+V AALL + GYDV+GVTLQLY+   A  +KG+CCAGQD+ DAR
Sbjct: 35  PVGTRIVAAMSGGVDSTVTAALLAKAGYDVVGVTLQLYDHGAAITKKGACCAGQDILDAR 94

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RF+  VI  FA +Y  GETP+PCV CN+TVKF DLL V R LG
Sbjct: 95  MAAERIGIPHYVLDYESRFKEQVIEEFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY++     G +   R  + R  D  +DQSYFLFATT +QL  LRFPLG M K
Sbjct: 155 AEAMATGHYVQRSFAAGAN---RPQLRRAADPAKDQSYFLFATTAEQLDFLRFPLGGMDK 211

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A E+GL IADK DSQDICFV +GKY  V+ RI    AL GD+VH++G++LGRH 
Sbjct: 212 PTVRLVAAELGLAIADKPDSQDICFVPEGKYTTVIDRIRPHGALPGDLVHMDGRVLGRHE 271

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316
           G+  YTIGQRRGL +A+G+PLFVV +D +  +VIVGPRE+L    + L+E NWLG +   
Sbjct: 272 GVTRYTIGQRRGLNIAVGDPLFVVKIDADKRQVIVGPREALLTQALSLKEGNWLGVEDSL 331

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           E A   G     ++RS+++PVP  +      N     + F+  E GVA GQACV Y   +
Sbjct: 332 EAAAAAGAPVLARVRSTREPVPGRLTLVPGPNGGEPRLVFDGLEEGVAPGQACVLYDP-A 390

Query: 373 NEARVLGGGIISGSKRSD 390
           +  RVLGGG I  ++R+ 
Sbjct: 391 DPERVLGGGFIVATERAG 408


>gi|239813406|ref|YP_002942316.1| tRNA-specific 2-thiouridylase MnmA [Variovorax paradoxus S110]
 gi|239799983|gb|ACS17050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus S110]
          Length = 369

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 175/383 (45%), Gaps = 36/383 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V
Sbjct: 3   KQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAASV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 60  ADVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R RL   ++   R  + + +D  +DQSYFL    Q QL    FP+G++ K  
Sbjct: 120 KIATGHYARVRL---NETTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + + + R  +     G I    G+ LG H G+
Sbjct: 177 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISKE--PGPIKDDRGRKLGEHQGL 234

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
             YT+GQR+GLG+                P FV   D   + + V        L    + 
Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQGHDHPWLLSSALA 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVA 360
             + +W+                 K R  Q      ++           + F + +  V 
Sbjct: 295 AGDASWVSGEAPAPGRYGS-----KARYRQADAACELEEGGGDPAASFSLRFGEPQWAVT 349

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQ+ V Y  +    R LGGG+I
Sbjct: 350 PGQSAVLYDGE----RCLGGGVI 368


>gi|94969297|ref|YP_591345.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Koribacter
           versatilis Ellin345]
 gi|189036216|sp|Q1IPC9|MNMA_ACIBL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94551347|gb|ABF41271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 370

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 146/379 (38%), Positives = 214/379 (56%), Gaps = 24/379 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAG 70
            K   + VAMSGGVDSS VAA+L+ +GY+++G+T+QL+N R+ +  +G        CC+ 
Sbjct: 2   NKSETIAVAMSGGVDSSTVAAMLRAEGYNLVGLTMQLWNQRRLAHHEGFGEPGVGRCCSL 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            DVYDARRV +T+ + +YV + E+RF   V+ PF   Y +G TP+PC  CN  +KF  LL
Sbjct: 62  DDVYDARRVAETLAIPYYVVNQEDRFERDVVKPFVEDYLSGRTPIPCSLCNNHLKFDQLL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +Q+GA+ +ATGHY R+          R  + RP D  +DQ+YFLF  TQ+QL    F
Sbjct: 122 RTAQQIGAEKIATGHYARNDFNAQ---TGRWELKRPADRAKDQTYFLFGLTQEQLSRTLF 178

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDI 245
           PLG   K  VR+ A+  GL + +K DSQ+ICF+  G Y   +               G++
Sbjct: 179 PLGHKTKPEVREDAKNHGLKLFEKPDSQEICFIPNGDYKKFLDAYLEEQGESLPDTSGEL 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V  +G+++G H GI N+T+GQR+GLGVA G PL+V+ L  +  +V+VG  + L    +  
Sbjct: 239 VTSSGEVVGHHTGIHNFTVGQRKGLGVATGSPLYVIELRGDKRQVVVGNNDELLTRNLRA 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQA 364
           + +NW+        +    +   KIR   +P    +++  DD V V F+  +  V  GQA
Sbjct: 299 KRMNWIAVSD----LAQPMRVHAKIRHKHEPAWATIEKTGDDEVLVTFDDPQRAVTPGQA 354

Query: 365 CVFYTSDSNEARVLGGGII 383
            V Y  D     V+GGG I
Sbjct: 355 VVLYDGDV----VVGGGWI 369


>gi|294084590|ref|YP_003551348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664163|gb|ADE39264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 419

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 185/397 (46%), Positives = 261/397 (65%), Gaps = 17/397 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
            ++ + +NSL   K P D RVVVAMSGGVDSSV AA+L  +GY+VIG+TLQLY+   A +
Sbjct: 27  TADLSAINSLGFAKAPADTRVVVAMSGGVDSSVTAAMLHDEGYEVIGITLQLYDHGVAVQ 86

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            KG+CCAG D++DAR V   + + HYV DYE +FR+ V+  FA SY  GETP+PCV CN+
Sbjct: 87  TKGACCAGIDIHDARTVSARLGIPHYVLDYESKFRDQVMEDFADSYLRGETPIPCVRCNQ 146

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           TVKF+DLL+  ++LGAD LATGHY++       +     ++ R +D  +DQSYFLFATT 
Sbjct: 147 TVKFTDLLTTAQELGADCLATGHYVQRL-----ETPAGPVLRRGIDASKDQSYFLFATTA 201

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +Q+  LRFPLG + K+  RDLAR+ GL +++K DSQDICFV  G+Y DVV+R+  G    
Sbjct: 202 EQMDYLRFPLGGLTKDETRDLARKYGLAVSEKPDSQDICFVPNGRYGDVVRRLRPGAVEA 261

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-------PLFVVYLDKNSSRVIVGPR 295
           GDIVHL+G +LG+H G+I+YTIGQRRGLG+   +       PL+VV +D  + RVIVGP+
Sbjct: 262 GDIVHLDGTVLGQHKGVIDYTIGQRRGLGIGGRKDADEADGPLYVVGIDAAAHRVIVGPQ 321

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354
            +L  + ++L E +W+  G    A V G     ++R++   +P  ++  + G   V  + 
Sbjct: 322 SALACYEVHLSETSWVAGG---GAPVAGHPVLARLRNTAPAMPAVLEAGEGGCAIVRLDD 378

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
            + G+A GQA   Y + ++   +LGGG IS +  + A
Sbjct: 379 PQFGIAVGQAAAIYDA-ADPENLLGGGWISAAPLAGA 414


>gi|121606705|ref|YP_984034.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas naphthalenivorans
           CJ2]
 gi|205816918|sp|A1VTY5|MNMA_POLNA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120595674|gb|ABM39113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 394

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 185/398 (46%), Gaps = 42/398 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK     R+VV +SGGVDS+V A LLK+ G++VIG+ ++ +     S+    C +  D 
Sbjct: 1   MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSEF---CSSNIDF 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   +++ V   F   Y AG TP P + CN  +KF   L   
Sbjct: 58  VDAAAVADVIGIEIEHVNFAANYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY R R    ++      + + +D  +DQSYFL    Q QL    FP+G
Sbjct: 118 MRLGAEKIATGHYARVR---QNEATGLHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K  VR +A E+GL  A K DS  ICF+ +  + D + R  A     G + +  G+IL
Sbjct: 175 ELHKTEVRRIADEIGLPNARKKDSTGICFIGERPFRDFLNRYIAKA--PGPVKNDQGRIL 232

Query: 254 GRHNGIINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSSRVIV 292
           G H G+  YT+GQR+GLG+                        EP FV   D +S+ + V
Sbjct: 233 GEHVGLSFYTLGQRQGLGIGGVKARGADLKAAQARGQRGVGEHEPWFVARKDMDSNTLWV 292

Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGV 348
                   L+   +  ++ +W+         +       K R  Q       V     G 
Sbjct: 293 VQGHDHPWLQSTLLNAQDCSWVAGSAPALGAMA-----AKTRYRQADAACELVSATAGGC 347

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            + F  ++  V  GQ+ V Y  +      LGGG+I+ S
Sbjct: 348 ELAFLDAQWAVTPGQSAVLYQGEV----CLGGGVIASS 381


>gi|148285130|ref|YP_001249220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Orientia tsutsugamushi str. Boryong]
 gi|205816896|sp|A5CFJ6|MNMA_ORITB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146740569|emb|CAM81183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Orientia tsutsugamushi str. Boryong]
          Length = 369

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 176/379 (46%), Positives = 235/379 (62%), Gaps = 13/379 (3%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+L    +   +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN   A  RKG+CCAGQ
Sbjct: 2   LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDA+ V + + + HYV +Y+++F+ +VI  F  SY  GETPLPCV CN++VKF DLL+
Sbjct: 62  DIYDAKFVANQLQIPHYVLNYKDKFKESVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + L AD L TGHY+R       D      + + +D ++DQSYFLFATT+ QL  L FP
Sbjct: 122 FAKDLQADALVTGHYVRRI-----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG+M K+  R  A   GL IADK DSQDICFV  G Y +VV ++       G IVH++G 
Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGAYHNVVAKLKPNAKKPGKIVHIDGY 236

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ILG H GIIN+TIGQRR +G++  +PL+V+ +D   + V VGP   L      +  +NWL
Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
           G G   + +V+     VK+RS+   V   +    +  V V   + E  +A GQACV Y  
Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVRAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353

Query: 371 DSNEARVLGGGIISGSKRS 389
           D     VLGGG I+  +  
Sbjct: 354 D----LVLGGGWIAKEQTQ 368


>gi|167751458|ref|ZP_02423585.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702]
 gi|167655704|gb|EDR99833.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702]
          Length = 358

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 13/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
           + + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N      R+ SCC+  DV DAR 
Sbjct: 2   NNKAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARS 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  ++++ +YVF++ +RF   VI  F ++Y  G TP PC+DCNR +KF  L    ++L  
Sbjct: 62  VAYSLDMPYYVFNFSDRFETDVIDRFINAYENGITPNPCIDCNRYLKFDKLYMRAKELDR 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R    V  DG  R ++ + +D  +DQSY L+  TQ+QL    FPLG+M+K 
Sbjct: 122 DYVVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R++A   G   A K+DSQDICFVQ G Y D +++       +GD +  +G ++GRH G
Sbjct: 178 QAREIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDKDGNVIGRHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +I YT+GQR+GLG++  EPL+V  ++  S+ V +   + L    +   +IN +       
Sbjct: 238 VIRYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDWLYSSIVKAGDINLISV----P 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +    +   K+R         V +N D +   F++ +  V  GQA V Y  D+    V+
Sbjct: 294 EIKGEMRVKAKVRYRHTEQWATVTQNGDTITAVFDEPQRAVTCGQALVLYDGDT----VV 349

Query: 379 GGGII 383
           GGG I
Sbjct: 350 GGGTI 354


>gi|312135463|ref|YP_004002801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor owensensis OL]
 gi|311775514|gb|ADQ05001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor owensensis OL]
          Length = 360

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 205/370 (55%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG
Sbjct: 62  RVAHILDIPYYVFNMKDNFKKEVINYFVGEYIKGRTPNPCIMCNRKIKFELFLKKAIALG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D+   R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEILSKTIFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+  
Sbjct: 179 DEVRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +  + ++V++G  + +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPDENKVVLGEEDKIFSDGLIASDLNFI----LF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +       V    ++ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKIRYTAKETKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|222529697|ref|YP_002573579.1| tRNA-specific 2-thiouridylase MnmA [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456544|gb|ACM60806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 360

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 203/370 (54%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG
Sbjct: 62  RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D    R I+ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDKSLYRYILKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+  
Sbjct: 179 DEVRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI----LF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +       V    ++ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKIRYTAKEAKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|319791106|ref|YP_004152746.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus EPS]
 gi|315593569|gb|ADU34635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus EPS]
          Length = 366

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 176/380 (46%), Gaps = 33/380 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R+VV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V
Sbjct: 3   KQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFIDAASV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 60  ADVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    ++   R  + + +D  +DQSYFL    Q QL    FP+G++ K  
Sbjct: 120 KIATGHYARVRH---NEVTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + D + R  +     G I    G+ LG H G+
Sbjct: 177 VRRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKE--PGPIKDDRGRKLGEHQGL 234

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
             YT+GQR+GLG+                P FV   D   + + V        L    + 
Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDIEKNTLWVVQGHDHPWLLSSALN 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
             + +W+                 K R  Q      +  + +G + + F   +  V  GQ
Sbjct: 295 ADDASWVSGEAPAAGSYGS-----KARYRQADAGCELSDDANGAFSLRFGAPQWAVTPGQ 349

Query: 364 ACVFYTSDSNEARVLGGGII 383
           + V Y  +    R LGGG+I
Sbjct: 350 SAVLYDGE----RCLGGGVI 365


>gi|14195277|sp|Q9JTJ9|MNMA_NEIMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 181/381 (47%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREIN 309
           G H G++ YT+GQR+       GEP FV   D   +   V+ G     L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +      ++          K R      P  ++  +D+ V + F++ +  V  GQ+ V Y
Sbjct: 291 FTLPERPKEG-----HYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQSTDKP 362


>gi|121635213|ref|YP_975458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis FAM18]
 gi|166235071|sp|A1KUY0|MNMA_NEIMF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120866919|emb|CAM10679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis FAM18]
 gi|325130624|gb|EGC53368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis OX99.30304]
 gi|325132760|gb|EGC55443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M6190]
 gi|325136777|gb|EGC59377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M0579]
 gi|325138645|gb|EGC61204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ES14902]
 gi|325204520|gb|ADY99973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240355]
          Length = 367

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +++   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|325266287|ref|ZP_08132966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kingella denitrificans ATCC 33394]
 gi|324982249|gb|EGC17882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kingella denitrificans ATCC 33394]
          Length = 389

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 185/376 (49%), Gaps = 24/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+  +VV +SGGVDSSV AALLKR G +V GV +Q +    + +    C   QD  DA  
Sbjct: 29  KNQNIVVGLSGGVDSSVTAALLKRGGANVRGVFMQNWEDDDSDE---YCSIKQDSLDAMA 85

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L      GA
Sbjct: 86  VADIVGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVAEGA 145

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R  +  G        + R  D  +DQSYFL+     QL    FPLG ++K 
Sbjct: 146 EAIATGHYARKEVRDG-----VHYLLRGADGNKDQSYFLYRLQPYQLQKALFPLGHLEKP 200

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA E GL  A K DS  ICF+ +  + + +++        G++V   G+I+G H G
Sbjct: 201 EVRRLAVEFGLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 258

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREINWLGDG 314
           +  YTIGQR+GLG+   GEP FV   +   +   V+ G   E L    + + +++W    
Sbjct: 259 LTFYTIGQRKGLGIGGAGEPWFVAGKNLPKNELLVVQGHDHELLYTRSLQMNQLSWTLPE 318

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +      +   K R         +Q  +DD   + F++ +  V  GQ+ V Y  +  
Sbjct: 319 KPREG-----RYTCKTRYRMTDAACTLQYLSDDTAELQFDEPQWAVTHGQSAVLYDGEV- 372

Query: 374 EARVLGGGIISGSKRS 389
               LGGGII+ + + 
Sbjct: 373 ---CLGGGIITATDKP 385


>gi|326575288|gb|EGE25216.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis CO72]
          Length = 392

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 199/386 (51%), Gaps = 28/386 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ +     S+    C A  D+ D
Sbjct: 15  KALKDIKVIVGMSGGVDSSVSAVLLQQVGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A+ V D I +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L     
Sbjct: 72  AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R     G     +  + R +D  +DQSYFL A    ++    FP
Sbjct: 132 SQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           +G+++K  VR +A++  L  A+K DS  ICF+ + K+ D +++     A +GDI   +G 
Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
            +G H+G++ YTIGQR G+G+        EP FV++ D  ++R+IVG       L+   +
Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360
              +++W      +     GF+C  K R  Q      V       D V V F  ++  V 
Sbjct: 306 TAYKLDWGIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ+ VFY  D      LGGG+I G+
Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387


>gi|264680822|ref|YP_003280732.1| Predicted tRNA(5-methylaminomethyl-2-
           thiouridylate)methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|262211338|gb|ACY35436.1| Predicted tRNA(5-methylaminomethyl-2-
           thiouridylate)methyltransferase [Comamonas testosteroni
           CNB-2]
          Length = 376

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 188/388 (48%), Gaps = 32/388 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V
Sbjct: 4   KQRVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 61  ADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++ K  
Sbjct: 121 KIATGHYARVR---QNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + D + R  +     G I+    + LG+H G+
Sbjct: 178 VRRIAEEIGLPNARKKDSTGICFIGERPFRDFLNRYISKE--PGPILDDRNRKLGKHVGL 235

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304
             YT+GQR GLG+                P FV   + + +  RV+ G     L  H + 
Sbjct: 236 SFYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALL 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363
             +++W+       A  +G     K R  Q   P  + Q  D G  +DF +++  V  GQ
Sbjct: 296 ADQVSWVAGH----APAEGKAYGSKTRYRQPDSPALISQATDAGFRLDFPEAQWAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391
           + V Y  D      LGGGII+    + A
Sbjct: 352 SAVLYDGDV----CLGGGIIAQVDPAAA 375


>gi|261392212|emb|CAX49726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 8013]
          Length = 367

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQSTDKP 362


>gi|254669809|emb|CBA04142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha153]
          Length = 367

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 182/381 (47%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+       GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 EGDV----CLGGGIIQSTDKP 362


>gi|320108171|ref|YP_004183761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Terriglobus saanensis SP1PR4]
 gi|319926692|gb|ADV83767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Terriglobus saanensis SP1PR4]
          Length = 389

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/380 (38%), Positives = 208/380 (54%), Gaps = 28/380 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQDVYD 75
           + VAMSGGVDSS VAALL+  G+ ++G+TLQL+N            + +G CC+  DVYD
Sbjct: 20  IAVAMSGGVDSSAVAALLRSQGHTLVGLTLQLWNQRRLAGHEGMPEQVRGRCCSIDDVYD 79

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + + + +YV + +ERF   V+ PF + Y AG TP+PC  CN  +KF  LL   RQ
Sbjct: 80  ARRVAEQLEIPYYVVNQQERFEADVVKPFVAEYLAGRTPIPCTLCNNHLKFDQLLLTARQ 139

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA+ +ATGHY R+     D  + R I+ RP D  +DQ+YFLF  TQ QL    FPLG M
Sbjct: 140 IGAEKIATGHYARNEF---DVARNRWILKRPTDRSKDQTYFLFGLTQPQLARTLFPLGHM 196

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNG 250
           +K +VR +A E  L +A K DSQ+ICF+  G Y   +               G++V   G
Sbjct: 197 EKPAVRAMAEEHDLAVAHKPDSQEICFIPGGDYKAFLAAYLDDQDQAMPDTAGELVDTTG 256

Query: 251 QILGRHNGIINYTIGQRRG----LGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G H GI N+T+GQR+G    L      P +V+ +D  +  V VG  + L V    + 
Sbjct: 257 NTVGHHTGIHNFTVGQRKGVQQNLNAHAASPFYVLGIDATTHNVTVGSDDDLFVRTARID 316

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
            +NW+     E       +   KIR   +P P  +  N+DG + + F++ +  V  GQ+ 
Sbjct: 317 RLNWISIATLETP----LRVEAKIRHRHEPAPATIAPNEDGTITLTFDEPQRAVTPGQSA 372

Query: 366 VFYTSDSNEARVLGGGIISG 385
           VFY  D     V+GGG IS 
Sbjct: 373 VFYQDD----EVVGGGWISS 388


>gi|308389689|gb|ADO32009.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Neisseria meningitidis alpha710]
          Length = 367

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 EGDV----CLGGGIIQSTDKP 362


>gi|330428736|gb|AEC20070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pusillimonas sp. T7-7]
          Length = 379

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 182/386 (47%), Gaps = 30/386 (7%)

Query: 13  DLDK-NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K +    RVV+ MSGGVDSSV A LLK  GYDV+G+ ++ +     S+    C   Q
Sbjct: 8   DMTKVSATKGRVVIGMSGGVDSSVAAWLLKEQGYDVLGLFMKNWEDDDDSE---YCSTRQ 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA  V D I V     ++   +++ V   F   Y+AG TP P V CN  +KF   L 
Sbjct: 65  DWLDAASVADLIGVDIEAVNFATEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLD 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +ATGHY R R     +G +   + + +DL +DQSYFL    Q QL    FP
Sbjct: 125 HAMTLGADYIATGHYARVRSIQTPNGTQH-QLLKALDLSKDQSYFLHRLNQAQLARTLFP 183

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG++ K  VR LA+E+ L  A K DS  ICF+ +  + + + R     A  G I    G 
Sbjct: 184 LGEIPKTEVRRLAQELQLPNAAKKDSTGICFIGERPFREFLNRYLPTHA--GPIKTPEGV 241

Query: 252 ILGRHNGIINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESL 298
           ++G H G+  YT+GQR+GLG+             +  +    D +S+ + V        L
Sbjct: 242 VVGEHQGLSFYTLGQRKGLGIGGVKGRQRDDGTADAWYTARKDLDSNTLYVVQGHDHPWL 301

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEV 357
               +  ++ +W+     E           K R  Q   V      + +   + F++ + 
Sbjct: 302 LASSLNAQDASWVAGYAPEPG-----SYAAKSRYRQADAVCALAGVSGNRFSLAFQEEQW 356

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
            V  GQ+ V Y  D      LGGGII
Sbjct: 357 AVTPGQSAVLYDKDV----CLGGGII 378


>gi|227872028|ref|ZP_03990409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sinus F0268]
 gi|227842120|gb|EEJ52369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sinus F0268]
          Length = 362

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 206/370 (55%), Gaps = 15/370 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80
           + ++AMSGGVDSSV AAL++  GYD IG+T++LY+S      R  +CC  +DV DAR+V 
Sbjct: 3   KALIAMSGGVDSSVAAALMQEKGYDCIGITMKLYDSETGQACRSRTCCTLEDVEDARQVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T+++  YV ++++ F+  VI+PF  +Y  G TP PC+ CNR +K   L     +L    
Sbjct: 63  STLSMPFYVLNFKDDFQKKVILPFVETYENGGTPNPCIRCNRFMKHDKLYQRAEELSCSY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           + TGHY R      D+   R ++ +  D ++DQSY L+  +Q+QL    FPLG+   KE 
Sbjct: 123 IVTGHYARIE---KDESSGRYLLKKAKDEKKDQSYVLYFLSQEQLAHTLFPLGEYSSKEE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A + G   +DK DSQDICFV  G Y D +++        GD V  NG+ LG H G 
Sbjct: 180 VREIADKYGFINSDKPDSQDICFVTNGDYGDFLEKFRGKPYPSGDFVDENGKKLGEHRGT 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR+GLG+++ +P++V   +   ++VI+  +E +    +   + NW+        
Sbjct: 240 VRYTIGQRKGLGLSLKKPMYVSGKNIEKNQVILSDKEGIYFEGLLANDFNWISL-----P 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             +      K R +   VP  V   ++G V++ F + E  V  GQA V Y  D     VL
Sbjct: 295 PTEDMAVEAKTRYNGKAVPAIVSVRENGDVFLRFPEKERAVTKGQAVVLYDGD----LVL 350

Query: 379 GGGIISGSKR 388
           GGG I    +
Sbjct: 351 GGGTIVEGYK 360


>gi|256383871|gb|ACU78441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384702|gb|ACU79271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455514|gb|ADH21749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 375

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 23/383 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 2   KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNININNDICPQEQD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V D +N+  +  D+ + + + V + F   Y    TP P + CN+ +KF   L+ 
Sbjct: 62  YLDAKAVADKLNIKLHRVDFIKEYWDYVFLYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              QL AD +A GHY +      +   ++  + +  D  +DQ+YFL    Q QL    FP
Sbjct: 122 AINQLNADYIAMGHYAKVEF---NKTTKQYELFKASDTNKDQTYFLSQLNQNQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L ++ KE VR +A E  L  A+K DS  ICF+ +  + D ++      +  G+IV +   
Sbjct: 179 LANLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIP--SQTGNIVDIKTN 236

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           ++LG+H GI+ YTIGQR+G+ +  M EP +V   D     + V     +  L     ++ 
Sbjct: 237 KVLGQHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCSTSDQSYLYSTSCFVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           +INW+ D     + V+ FKC  K R  Q+   V V++ DD    V FEK    +  GQ  
Sbjct: 297 DINWILDLSKYVSDVNQFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY  D      LGG +I    +
Sbjct: 357 VFYLDDI----CLGGAVIDKVVK 375


>gi|15677407|ref|NP_274563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis MC58]
 gi|14195280|sp|Q9JYJ6|MNMA_NEIMB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|7226803|gb|AAF41910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis MC58]
 gi|316983800|gb|EFV62780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis H44/76]
 gi|325199845|gb|ADY95300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis H44/76]
          Length = 367

 Score =  446 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +D+   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|313665411|ref|YP_004047282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma leachii PG50]
 gi|312949863|gb|ADR24459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma leachii PG50]
          Length = 375

 Score =  446 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/383 (31%), Positives = 189/383 (49%), Gaps = 23/383 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +VVV +SGGVDSSV   LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 2   KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNANINNDICPQEQD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V D +N+  +  D+ + + + V   F   Y    TP P + CN+ +KF   L+ 
Sbjct: 62  YLDAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              QL AD +A GHY +       +   +  + +  D  +DQ+YFL    Q+QL    FP
Sbjct: 122 AINQLNADYIAMGHYAKVEFNKTTN---QYELIKASDTNKDQTYFLSQLNQKQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L ++ KE VR +A +  L  A+K DS  ICF+ +  + + ++         GDIV +   
Sbjct: 179 LANLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPN--QTGDIVDIKTN 236

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           ++LG+H G++ YTIGQR+G+ +  M EP +V   D   + + V     +  L      + 
Sbjct: 237 KVLGQHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           +INW+ D       ++ F+C  K R  Q    V V++ DD    V F+K    +  GQ  
Sbjct: 297 DINWILDVSKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY +D      LGG +I    +
Sbjct: 357 VFYLNDI----CLGGAVIDKVIK 375


>gi|269217070|ref|ZP_06160924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia exigua ATCC 700122]
 gi|269129207|gb|EEZ60292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia exigua ATCC 700122]
          Length = 362

 Score =  446 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 144/372 (38%), Positives = 203/372 (54%), Gaps = 19/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-----KASKRKGSCCAGQDVYD 75
            RV+V MSGGVDSSV A +LK+ GY+VIG T++L+ S        S    +CC+  DV D
Sbjct: 3   KRVMVGMSGGVDSSVTAYVLKQQGYEVIGATMRLHGSDLPGRDARSCASRTCCSLDDVED 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+ V   + ++H   D+ +RF +AVI PF  +Y    TP PC+DCNR +KF  +L     
Sbjct: 63  AKSVARRLGIAHRTIDFTDRFEDAVIKPFVRAYETARTPNPCIDCNRRLKFGSMLERALD 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG D +ATGHY +           R  + R  D  +DQSY L++ TQ QL     PLG M
Sbjct: 123 LGCDYVATGHYAQIVRRGD-----RFALVRGADASKDQSYVLYSLTQYQLAHTLLPLGGM 177

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +K  VR +A E G   ADK +SQDICF+  G Y   ++R +      G+I    G ++GR
Sbjct: 178 RKSEVRAIAAEQGFINADKPESQDICFIPDGDYVGFLERYSGHTPQPGEIRDEAGAVIGR 237

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H+GI ++T+GQR+G+G+A   PL+VV  D     ++VGP++SL        + NW+ D  
Sbjct: 238 HSGIESFTVGQRKGIGIAASGPLYVVAKDARDHALVVGPKDSLLSDGCVADDWNWVAD-- 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
                +  F+  VK    Q P P  V+R  DG V + +       A GQA V Y  D   
Sbjct: 296 --PEDLASFEVMVKTHYRQTPHPARVERRQDGTVRIVYASPARLAAPGQAVVVYQGD--- 350

Query: 375 ARVLGGGIISGS 386
             V+GGG ++ +
Sbjct: 351 -EVIGGGTVAST 361


>gi|221069865|ref|ZP_03545970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Comamonas testosteroni KF-1]
 gi|220714888|gb|EED70256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Comamonas testosteroni KF-1]
          Length = 376

 Score =  446 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 188/388 (48%), Gaps = 32/388 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V
Sbjct: 4   KQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 61  ADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++ K  
Sbjct: 121 KIATGHYARVR---QNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + D + R  +     G I+    + LG+H G+
Sbjct: 178 VRRIAEEIGLPNARKKDSTGICFIGERPFRDFLNRYISKE--PGPILDDRNRKLGKHVGL 235

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304
             YT+GQR GLG+                P FV   + + +  RV+ G     L  H + 
Sbjct: 236 SFYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALL 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363
             +++W+       A   G     K R  Q   P  + Q ++ G  +DF +++  V  GQ
Sbjct: 296 ADQVSWVAGH----APAQGKAYGSKTRYRQPDSPALISQASEAGFRLDFPEAQWAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391
           + V Y  D      LGGGII+    + A
Sbjct: 352 SAVLYDGDV----CLGGGIIAQVDPAAA 375


>gi|254672922|emb|CBA07279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha275]
          Length = 367

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D + +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+       GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +++   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 EGDV----CLGGGIIQSTDKP 362


>gi|312793905|ref|YP_004026828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181045|gb|ADQ41215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 360

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 203/370 (54%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG
Sbjct: 62  RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V  +G ILG+  
Sbjct: 179 DEVRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEKET-GIKDEGIYVDTDGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++V++G    +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEGKIFSDGLIAYDLNFI----PF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +       +    ++ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKIRYTAKEAKARIIPAQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|42560982|ref|NP_975433.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400641|sp|Q6MTG1|MNMA_MYCMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42492479|emb|CAE77075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320545|gb|ADK69188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 375

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/383 (31%), Positives = 188/383 (49%), Gaps = 23/383 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V+V +SGGVDSSV   LL   GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 2   KQKVIVGLSGGVDSSVACYLLLEQGYEVEGLFMRNWDSATNNDILGNRNINDDICPQEQD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V D +N+  Y  D+ + + + V   F   Y    TP P + CN+ +KF   L+ 
Sbjct: 62  YLDAKAVADKLNIKLYRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              QL AD +A GHY +       +   +  + +  D  +DQ+YFL    Q+QL    FP
Sbjct: 122 AINQLNADYIAMGHYAKVEFNKTTN---QYELIKASDTNKDQTYFLSQLNQKQLSKTLFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L ++ KE VR +A +  L  A+K DS  ICF+ +  + + ++         GDIV +   
Sbjct: 179 LANLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPN--QTGDIVDIKTN 236

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306
           ++LG+H G++ YTIGQR+G+ +  M EP +V   D   + + V     +  L      + 
Sbjct: 237 KVLGQHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVN 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           +INW+ D       ++ F+C  K R  Q    V V++ DD    V F+K    +  GQ  
Sbjct: 297 DINWILDISKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           VFY +D      LGG +I    +
Sbjct: 357 VFYLNDI----CLGGAVIDKVIK 375


>gi|270156742|ref|ZP_06185399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae D-4968]
 gi|289164811|ref|YP_003454949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae NSW150]
 gi|269988767|gb|EEZ95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae D-4968]
 gi|288857984|emb|CBJ11844.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae NSW150]
          Length = 361

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 191/376 (50%), Gaps = 27/376 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDSSV A LL+  GY V G+ ++ +       + G C A QD+ DA+ VC+
Sbjct: 4   KVIIGMSGGVDSSVAAWLLQETGYQVEGLFMKNWEQDD---KDGFCPAAQDLADAQAVCN 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  ++ + +   V   F S Y  G TP P V CN+ +KF   L     LGAD +
Sbjct: 61  QLRIPLHTTNFSKEYWQNVFTYFLSEYEKGRTPNPDVLCNKEIKFKAFLDHALTLGADYI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY ++ +  GD G     + +  D ++DQ+YFL A   + L    FP+GD  K  +R
Sbjct: 121 ATGHYAKN-VIDGDTG----FLFKAKDRDKDQTYFLHAVDPKALGKTLFPIGDYTKTEIR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + A+++GL    K DS  ICF+ + ++   ++     +A  G+I +  G++LG+H+G++ 
Sbjct: 176 EFAQKLGLVTHAKKDSTGICFIGEKRFKSFLQEFI--LARPGEIKNTEGKVLGKHDGLMF 233

Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           YTIGQR+GLG+        +P +VV  D +++ + V        L  H +    I+WL D
Sbjct: 234 YTIGQRQGLGIGGLQNTSDDPWYVVDKDISTNTLYVAQGSQHPMLYAHGLVCGPIHWLAD 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372
                 +     C+ K R  Q      +   D +  YV F   +  V  GQ  VFY  + 
Sbjct: 294 CKDRLPLT----CYAKTRYRQAEQGCMISPEDGNQHYVMFSNPQRAVTPGQYIVFYDKN- 348

Query: 373 NEARVLGGGIISGSKR 388
              + LGG  I    R
Sbjct: 349 ---QCLGGATIEHIIR 361


>gi|325134641|gb|EGC57281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M13399]
 gi|325144816|gb|EGC67105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240013]
 gi|325205709|gb|ADZ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M04-240196]
          Length = 367

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+GLG+   GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +++   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|312877398|ref|ZP_07737363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795872|gb|EFR12236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 360

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 203/370 (54%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +  R+ SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     LG
Sbjct: 62  RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  EG  V   G ILG+  
Sbjct: 179 DEVRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEKET-GIKDEGIYVDTEGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++V++G  + +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFI----PF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   K+R +       +    ++ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKVRYTAKEAKARIIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|121607299|ref|YP_995106.1| tRNA-specific 2-thiouridylase MnmA [Verminephrobacter eiseniae
           EF01-2]
 gi|166991125|sp|A1WEN1|MNMA_VEREI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|121551939|gb|ABM56088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verminephrobacter eiseniae EF01-2]
          Length = 370

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 180/388 (46%), Gaps = 34/388 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  RVVV +SGGVDS+V A LL++ G++V+G+ ++ +         G C +G D 
Sbjct: 1   MTASPKQ-RVVVGLSGGVDSAVTAYLLRQQGHEVVGIFMKNWEDDDDG---GYCPSGTDF 56

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V D I +     ++   ++  V   F   Y AG TP P V CN  +KF   L   
Sbjct: 57  VDAAAVADVIGIEIEHVNFAADYKERVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGA+ +ATGHY   R         R  + +  D  +DQSYFL    Q+QL    FPLG
Sbjct: 117 LRLGAEKIATGHYAGVRRNPA---SGRFELLKGADPAKDQSYFLHRLDQRQLSRTLFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA ++GL  A K DS  ICF+ +  + + + R        G I    G++L
Sbjct: 174 ALRKTEVRRLAEDIGLPNARKKDSTGICFIGERPFREFLNRYIG--PAPGPIEDDRGRVL 231

Query: 254 GRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESL 298
           G+H+G+  YT+GQR+GLG+                P FV   +  ++  RV+ G     L
Sbjct: 232 GQHSGLSFYTLGQRQGLGIGGLKEQGAQRGGGAHAPWFVARKELATNTLRVVQGHDHPWL 291

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEV 357
               +  ++  W+             +   K R  Q             G  + F + + 
Sbjct: 292 LSRALEAQDARWICGAAPAPG-----RYAAKTRYRQQDASCTMASAGQAGFRLHFSEEQW 346

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385
            V  GQ+ V Y  +      LGGG+I+G
Sbjct: 347 AVTPGQSAVLYDGNV----CLGGGVIAG 370


>gi|307293549|ref|ZP_07573393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobium chlorophenolicum L-1]
 gi|306879700|gb|EFN10917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobium chlorophenolicum L-1]
          Length = 376

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/387 (49%), Positives = 241/387 (62%), Gaps = 21/387 (5%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A       L +     R+VVAMSGGVDSSVVAAL  R G + IGVTLQLY+   A  R G
Sbjct: 7   APMQPQFQLSEPLNARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DAR V D I ++HYVFDYE RFR +VI  FA  Y AG TP+PCV CN  VK
Sbjct: 67  SCCAGQDIRDARAVADRIGIAHYVFDYESRFRESVIADFADEYMAGRTPIPCVKCNMGVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DL  + R LGAD LATGHY+R       +G +   + R  D  RDQSYFLFATTQ QL
Sbjct: 127 FTDLFQIARDLGADCLATGHYVRRV-----EGPQGAELHRAADPARDQSYFLFATTQAQL 181

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K  VR++A E+GL +A K DSQDICFV  G Y  +V+++       GDI
Sbjct: 182 DYLRFPLGGLPKPQVREIAAELGLSVAMKPDSQDICFVPDGDYAKIVRKLRPDADAGGDI 241

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           VH++G+++G H G+I+YT+GQR+GL +    EPL+VV LD  + RVIVGP+ +L V    
Sbjct: 242 VHIDGRLMGTHKGMIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAAR 301

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
           L +INWLG                K+RS   PVP  ++ +     + F+  E GVA GQA
Sbjct: 302 LSDINWLGGDFSGP-------LTAKVRSMAKPVPARLEGD----RLLFDAPEYGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391
            V Y  D    RVLGGG I+ ++ + A
Sbjct: 351 AVLYAGD----RVLGGGWIAATEAALA 373


>gi|310816020|ref|YP_003963984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ketogulonicigenium vulgare Y25]
 gi|308754755|gb|ADO42684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ketogulonicigenium vulgare Y25]
          Length = 379

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/386 (50%), Positives = 254/386 (65%), Gaps = 14/386 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +  A  LNSL + K   + RVVVAMSGGVDSSVVAA LKR+GYDV+GVTLQLY+   A
Sbjct: 1   MPLDPA--LNSLGIAKPVAETRVVVAMSGGVDSSVVAAQLKREGYDVVGVTLQLYDHGAA 58

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             +KG+CCAG+D++DARRV + +   HYV DYE  FR AVI  FA SY AG TP+PC+ C
Sbjct: 59  LAKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRC 118

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N  VKF DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+T
Sbjct: 119 NERVKFKDLLQTAKDLDADCMATGHYIQRKM-----GDYAPELHSAADPNRDQSYFLFST 173

Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           T +QL  LRFPLG +K K   R LA E GL +ADK DSQDICFV  G Y  V++++    
Sbjct: 174 TPEQLAYLRFPLGHLKSKAETRALAAEFGLGVADKPDSQDICFVPDGNYAAVIEKLRPDA 233

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298
           A  G+IV +NG++LG+H G+I+YT+GQ R      +GEP++VV LD ++ RVIVGP+ +L
Sbjct: 234 AQPGEIVDMNGKVLGQHPGVIHYTVGQRRGLGVGGLGEPVYVVRLDVDTRRVIVGPKSAL 293

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357
              R+ LRE+NWLGDG F D      +  V++RSS+ P    ++  +     V+    E 
Sbjct: 294 ATRRVPLREVNWLGDGAFTDMAERHIR--VRVRSSRPPAEAILRPLSATTAEVELLTPEE 351

Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383
           GV+ GQACVFY  ++  +RVLGGG I
Sbjct: 352 GVSIGQACVFY--ETEGSRVLGGGWI 375


>gi|262276991|ref|ZP_06054784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HIMB114]
 gi|262224094|gb|EEY74553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HIMB114]
          Length = 377

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/388 (49%), Positives = 260/388 (67%), Gaps = 13/388 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           + +++ T  N L  DK+    +VVVAMSGGVDSSVVAALLK+DGYDVIG+TLQL++  K 
Sbjct: 3   LAITDITEKNILGFDKDKSQTKVVVAMSGGVDSSVVAALLKKDGYDVIGITLQLFDYGKI 62

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K KG+CCAG+D+YDA++VCD + + H VF+YE  F+  VI  FA SY  GETP+PCVDC
Sbjct: 63  GKTKGTCCAGKDIYDAKKVCDQLEIKHEVFNYESIFKEEVIEKFADSYIKGETPIPCVDC 122

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF DL    + L AD LATGHY++             +M RP DL RDQSYFLF T
Sbjct: 123 NQTVKFRDLFKSAKNLDADALATGHYVKRIF------NHSAMMYRPEDLNRDQSYFLFNT 176

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           TQ+QL  LRFPL  + K   RD+AR++ L +A+K DSQDICFV  G Y  +V+++     
Sbjct: 177 TQEQLDYLRFPLASLPKTKTRDIARDLKLQVANKPDSQDICFVPNGNYKTIVEKLRPESF 236

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
           +EG+IV   G+ILG+HNGI N+TIGQR+G+ V+  +P FV+ +D   ++V++G RE L V
Sbjct: 237 VEGEIVDTKGKILGKHNGIANFTIGQRKGIKVSSIDPFFVIRIDPKKNQVVIGSREELSV 296

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             IYL++IN+L D   ++ +   F  FVK+RS+ + +   V  +D+G  V     E GV+
Sbjct: 297 QTIYLKDINYLCD---KEQLNGDF--FVKVRSTGNLLECNV--SDNGHKVTLLSGETGVS 349

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKR 388
            GQACVFY  D    RV GGG I  +++
Sbjct: 350 PGQACVFYKKDEFGMRVYGGGWIDRTEK 377


>gi|309790491|ref|ZP_07685051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oscillochloris trichoides DG6]
 gi|308227478|gb|EFO81146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oscillochloris trichoides DG6]
          Length = 359

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 138/364 (37%), Positives = 207/364 (56%), Gaps = 13/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VAMSGGVDSS+ AALL   G+ V+GVT+ L++       +  CC+ +    ARRVC+ 
Sbjct: 4   IMVAMSGGVDSSLTAALLHEQGHTVVGVTMHLWDGDDDHLAESLCCSLEMTASARRVCNQ 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + +YVF+Y+  FR AV+  F  +Y+ G TP PC+ CNR +KF  LL+   QLG D +A
Sbjct: 64  LGIPYYVFNYQREFRRAVVDAFVHAYSHGYTPNPCIACNREIKFRALLARANQLGYDYVA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R R+   +    +  + R  D  +DQSY L+   Q +L  L FPLG+ +K  VR 
Sbjct: 124 TGHYVRRRVTDAN----QYKLLRAHDHGKDQSYVLYMLGQTELARLLFPLGEYQKSEVRA 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL+ AD+ +SQDICFV  G Y  +++       + G IV  +G+ +G+H G+  Y
Sbjct: 180 MATARGLESADRPESQDICFVPDGDYRQLLRTEAPASLVPGPIVDQHGREVGQHQGLPLY 239

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLGV    PL+V  LD   + +IVGP  +L  H  ++   + +     E     
Sbjct: 240 TIGQRRGLGVYAATPLYVTGLDTARNTLIVGPAAALLRHEFWVEAASSVAATWPESP--- 296

Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            F C V++R+     P  V  +  + +++  +     ++ GQA V Y  +    RV+GGG
Sbjct: 297 -FTCEVQVRAHGATAPATVTAHPGERLHIQLQSPIRAISPGQAAVLYAGE----RVIGGG 351

Query: 382 IISG 385
            I+ 
Sbjct: 352 TIAR 355


>gi|218460955|ref|ZP_03501046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli Kim 5]
          Length = 353

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 4/337 (1%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R G
Sbjct: 7   APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           SCCAGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVK
Sbjct: 67  SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+DLL+  ++LGAD LATGHYIRSR     +   RR + RP D +RDQSYFLFATTQQQ+
Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQQQI 186

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             LRFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+I
Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD  S RVIVGP+E+LE HR+YL
Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306

Query: 306 REINWLGDGLFEDAVV-DGFKCFVKI-R--SSQDPVP 338
           R++NWLGD    +A    GF C  K  R      P  
Sbjct: 307 RDVNWLGDETLAEAASGGGFACTPKSDRHGHRHPPCC 343


>gi|257437854|ref|ZP_05613609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199514|gb|EEU97798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 371

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 135/375 (36%), Positives = 197/375 (52%), Gaps = 13/375 (3%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDV 73
            +N K    ++AMSGGVDSSV A L+++ GYD  G+T++L  N         +CC+ +D+
Sbjct: 8   AQNTKRPGALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSEKDI 67

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V   +++ + V D+   FR  +I  F   Y  G TP PC+DCNR +KF  LL   
Sbjct: 68  EDAAEVAFAMDIPYEVLDFTADFREKIIEKFIRVYEMGGTPNPCIDCNRYMKFDHLLRWA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G + + TGHY R      D+   R ++ + +D  +DQSY L+  TQ+QL  +R PLG
Sbjct: 128 ESHGMEYVVTGHYARVE---QDEATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHVRLPLG 184

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K  VR++A +     A K DSQDICFV  G Y   ++         GD +  NG+ +
Sbjct: 185 GLHKAEVREIAEKQHFINARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDENGKKV 244

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNG + YTIGQR+GLG+AMG P++V   D  ++ V VGP E+L    +Y  E+NW+  
Sbjct: 245 GTHNGAVRYTIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPEENLFDRIVYADEVNWIAI 304

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                 +    +   + R  Q      V    +G   ++F++ +     GQA V Y  D 
Sbjct: 305 ----PELTAPLRVTARTRYHQTEQAATVYPAGEGQFRLEFDQPQRAPTPGQAVVLYQGDV 360

Query: 373 NEARVLGGGIISGSK 387
               VLGGG I   +
Sbjct: 361 ----VLGGGTIVAVE 371


>gi|322434612|ref|YP_004216824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX9]
 gi|321162339|gb|ADW68044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX9]
          Length = 379

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/389 (39%), Positives = 221/389 (56%), Gaps = 31/389 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKG 65
           DL + P+   + VAMSGGVDSS VAALL   GYD+IG+TLQL+N              +G
Sbjct: 3   DLSQIPE--TIAVAMSGGVDSSAVAALLHEQGYDLIGLTLQLWNQRRLAGHEGMPESVQG 60

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+  DVYDARRV + I + +Y+ + +ERF   V+ PF S Y AG TP+PC  CN  +K
Sbjct: 61  RCCSIDDVYDARRVAEKIGIPYYLVNQQERFEADVVKPFVSEYLAGRTPIPCTLCNNHLK 120

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F  LL   RQ+GA  +ATGHY R+R    D+   R I+ RP D  +DQ+YFLF  TQ QL
Sbjct: 121 FDQLLLTARQVGATKIATGHYARNRF---DEATGRWILSRPADRSKDQTYFLFGLTQDQL 177

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE--- 242
               FPLG+M+K +VR +A E GLD+A K DSQ+ICF+  G Y   ++        E   
Sbjct: 178 AHTLFPLGEMQKPAVRVMATEAGLDVAAKPDSQEICFIPGGDYQTFLRAYLDEQGEELPD 237

Query: 243 --GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
             G++V  +G+++GRH GI N+T+GQR+GLG+    PL+V+ +  +S +V VG    L  
Sbjct: 238 SSGELVTSSGEVVGRHTGIHNFTVGQRKGLGLTSANPLYVLAIHPDSHQVQVGSDAELMT 297

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-----RNDDGVYV-DFEK 354
             +    +NW+        + +  +   K+R   +P P  +       + D + +  F++
Sbjct: 298 RELRANRLNWISI----PEITEPIRVLAKVRHRHEPQPATLSSGGIGPDGDPIAIAIFDE 353

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  +  GQA +FY  D     V+GGG I
Sbjct: 354 PQRAITPGQAAIFYREDD----VVGGGWI 378


>gi|269926148|ref|YP_003322771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789808|gb|ACZ41949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 355

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 145/363 (39%), Positives = 199/363 (54%), Gaps = 19/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRVC 80
           VVVAMSGGVDSSV AA+L+  GYDVIGV L+LY+   +        CC    + DA  VC
Sbjct: 4   VVVAMSGGVDSSVAAAMLRDQGYDVIGVNLRLYSKEDSQAYSLNKQCCTLDSMRDAEAVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  Y  + E  F   V+  F S Y  G+TP PC+ CN  +KF  L      LGAD 
Sbjct: 64  RKLGIPFYALNMEREFTRDVVDYFVSEYLQGKTPNPCLACNAHIKFHHLFERAMALGADY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R       +    +   +D  +DQSY L+  +Q++L     P+G+  K   
Sbjct: 124 IATGHYARLRR-----TESGVKLLTGVDAAKDQSYTLYMLSQRELERTLLPIGEQTKAET 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+LAR+ GL  A+K +SQDICF+  G Y   V+R+       G IV  +G+ LG H+G+ 
Sbjct: 179 RELARKYGLVTANKPESQDICFIPSGDYRAFVRRLAPHAESPGPIVDTSGRQLGVHHGVA 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+ +G+P++VV LD   + V+VG +E L    I L ++N++         
Sbjct: 239 FYTIGQRKGLGITVGKPMYVVRLDPEKNMVVVGTKEELSSREIRLCDVNYIDGS----PR 294

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG-VASGQACVFYTSDSNEARVL 378
            + F+C VK+R     +P  V   DD  V V+      G VA GQA VFY  +     VL
Sbjct: 295 TEAFECEVKLRYRGASIPAIVHPEDDRSVRVELLGP--GNVAPGQAVVFYQGE----EVL 348

Query: 379 GGG 381
           GGG
Sbjct: 349 GGG 351


>gi|299531933|ref|ZP_07045333.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44]
 gi|298720108|gb|EFI61065.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44]
          Length = 376

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 189/388 (48%), Gaps = 32/388 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V
Sbjct: 4   KQRVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 61  ADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    +   +   + + +D  +DQSYFL    Q QL    FP+G++ K  
Sbjct: 121 KIATGHYARVR---QNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTE 177

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + D + R  +     G I+    + LG+H G+
Sbjct: 178 VRRIAEEIGLPNARKKDSTGICFIGERPFRDFLNRYISKE--PGLILDDRNRKLGKHVGL 235

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304
             YT+GQR GLG+                P FV   + + +  RV+ G     L+ H + 
Sbjct: 236 SFYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLQSHALL 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363
             +++W+       A  +G     K R  Q   P  + Q  + G  +DF +++  V  GQ
Sbjct: 296 ADQVSWVAG----QAPAEGKAYGSKTRYRQPDSPALISQATEAGFRLDFPEAQWAVTPGQ 351

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391
           + V Y  D      LGGGII+    + A
Sbjct: 352 SAVLYDGDV----CLGGGIIAQVDPAAA 375


>gi|312127260|ref|YP_003992134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777279|gb|ADQ06765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 360

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 204/370 (55%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ S    +     SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQSGCGEELITGKSCCSLYAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + +++ +YVF+ ++ F+  VI  F   Y  G TP PC+ CNR +KF   L     +G
Sbjct: 62  RVANILDIPYYVFNMKDDFKKMVIDYFVDEYIKGRTPNPCIMCNRKIKFEFFLKKAITIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D+   R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IVEYDNSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A+K DSQ+ICF+    Y   +++   GI  +G  V   G ILGR  
Sbjct: 179 DEVRRLAEKFKLPVANKPDSQEICFIPDNNYGKFIEKET-GIKEDGIYVDTEGNILGRSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++VI+G  + +    +   ++N++      
Sbjct: 238 TYYNYTIGQRKGLGISTGKRMYVVAIKPEENKVILGEEDKIYADNLVATDLNFI----PF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +       +    D+ V V F + +  +  GQ+ VFY+ D     
Sbjct: 294 DKLESELEVTAKIRYTAKEAKARIIPIEDNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|304439506|ref|ZP_07399414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372014|gb|EFM25612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 355

 Score =  444 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 184/373 (49%), Gaps = 28/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   VV+ +SGGVDSSV A LLK  GY+VIGV ++ ++          C A  D  D  +
Sbjct: 4   KKRTVVLGISGGVDSSVAAYLLKEQGYNVIGVFMKNWDENDEE-----CTATDDYLDVVK 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + +++ +Y  ++E+ + + V   F + Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 59  VANALDIKYYTVNFEKEYWDTVFTYFLNEYKKGRTPNPDVMCNQNIKFKAFLDFALKLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R +   G        + R +D  +DQSYFL    ++ L    FP+GD+KKE
Sbjct: 119 DYIAMGHYARVKHENG-----HSYLLRGVDENKDQSYFLSRVKEEALKKTIFPIGDIKKE 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A E+ L  A K DS  +CF+ +  +   + +        G IV   G +LG H+G
Sbjct: 174 RVREIAEELNLATAKKKDSTGVCFIGERDFNKFLDKFL--FTKPGKIVDEAGNVLGEHSG 231

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           +++YTIGQR+     GV  GEP FV   +   + +IV        L     Y+ E  ++ 
Sbjct: 232 LMHYTIGQRKGIGIGGVGTGEPFFVADKNLEKNELIVAQGVDNPILYRDEFYVEEPFFIN 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
                        C  KIR     V + V + DD  + V  EK   GV  GQ  VFY+ +
Sbjct: 292 G-----TPDYPLNCTGKIRYRAPDVGMVVTKIDDETLKVKLEKPLKGVTPGQIAVFYSGE 346

Query: 372 SNEARVLGGGIIS 384
                 LG GII 
Sbjct: 347 I----CLGSGIIK 355


>gi|241761211|ref|ZP_04759299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283856328|ref|YP_162504.2| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|292495018|sp|Q5NPG7|MNMA_ZYMMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|241374118|gb|EER63615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283775325|gb|AAV89393.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 370

 Score =  444 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/379 (49%), Positives = 247/379 (65%), Gaps = 21/379 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             +DK     R+VVAMSGGVDSSVVAAL K  G + IG+TLQLY+   A  RKGSCCAG+
Sbjct: 5   FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V + I + HYVFDYE  F+ +VI  F S Y AG TP+PC+ CN+ VKF+DLL+
Sbjct: 65  DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R+LGAD LATGHY+R  +        R  M R +D  RDQSYFLFATT++QL  LRFP
Sbjct: 125 VARELGADCLATGHYVRRLVNND-----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K+DSQDICFV  G Y  +V+         GDIV + G+
Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +LG+H+G+I++T+GQRRGL +    EPL+V+ LD    +++VGPR++L V +  ++E+NW
Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           L DG   +         VKIRS+  PV        DG  + FEK E GV+ GQA VFY  
Sbjct: 300 LVDGFDREM-------QVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFYDG 348

Query: 371 DSNEARVLGGGIISGSKRS 389
           D    +VLGGG I  +  +
Sbjct: 349 D----QVLGGGWIKETTPA 363


>gi|77463173|ref|YP_352677.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides 2.4.1]
 gi|123592152|sp|Q3J358|MNMA_RHOS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77387591|gb|ABA78776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 379

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/379 (49%), Positives = 243/379 (64%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 5   PLNSLGFAKPPAVTRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGAC 64

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF 
Sbjct: 65  CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT +QL  
Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GPAGPELHSAADPARDQSYFLFSTTPEQLAF 179

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K   R LA   GL +ADK DSQDICFV  G Y +V++++  G A  G+IV
Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIV 239

Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L+G++LG H G+I+YTIGQ R      +G+PL+VV LD    +VIVGP+E+L    + +
Sbjct: 240 DLSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPV 299

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD          ++   K+RS++ P    ++  +D    V+    E GV+ GQA
Sbjct: 300 REINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY     ++R+LGGG I
Sbjct: 358 CVFYA--PGDSRILGGGWI 374


>gi|302382556|ref|YP_003818379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302193184|gb|ADL00756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 407

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/370 (52%), Positives = 247/370 (66%), Gaps = 6/370 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+   A K+KG+CCAGQD++DAR
Sbjct: 37  PVGSRVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 96

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + + + HYV DYE RFR+AVI  FA SY  G+TP+PC+ CN+TVKF DLL V R LG
Sbjct: 97  LAAEMLGIPHYVLDYESRFRDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 156

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +ATGHY+   +        R  M + +D  RDQSYFLFATT+ QL  LRFPL  ++K
Sbjct: 157 AAAMATGHYVGRAVAAD----GRAQMRKAIDPSRDQSYFLFATTRDQLDYLRFPLAGLEK 212

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +VR +A E+GL IA K DSQDICFV  G Y  ++ R+       G+IVH++G++LG H 
Sbjct: 213 PAVRGVAAELGLRIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGHHA 272

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316
           GI +YTIGQRRGL VA+GEPLFV  LD ++ RVIVGPRE+L    + L E NWLGD    
Sbjct: 273 GITDYTIGQRRGLNVAVGEPLFVTRLDPDTRRVIVGPREALLTASLTLDETNWLGDEASI 332

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E A         ++RS++ P P  +   D G+ V FE  E GVA GQAC  Y   S+  R
Sbjct: 333 EAAAAANTPVLARVRSTRPPSPARLTLADSGISVVFETGEEGVAPGQACALYYP-SDPDR 391

Query: 377 VLGGGIISGS 386
           +LGGG I+ +
Sbjct: 392 LLGGGFIAST 401


>gi|325919552|ref|ZP_08181566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas gardneri ATCC 19865]
 gi|325549961|gb|EGD20801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas gardneri ATCC 19865]
          Length = 378

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 182/392 (46%), Gaps = 33/392 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++V +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIIVGVSGGVDSSVAAWRLAQQGESIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSNEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYARVAHSGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++  L    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDANLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+ H +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSHWLQSEQPHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V+  DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVEVRDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
                LGG +I+ +            + G  F
Sbjct: 349 ---ECLGGAVIAATD-----APMERQLAGSSF 372


>gi|126462045|ref|YP_001043159.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC
           17029]
 gi|205816923|sp|A3PJ71|MNMA_RHOS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126103709|gb|ABN76387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 379

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/379 (49%), Positives = 243/379 (64%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 5   PLNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGAC 64

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF 
Sbjct: 65  CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT +QL  
Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GPAGPELHCAADAARDQSYFLFSTTPEQLAF 179

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K   R LA   GL +ADK DSQDICFV  G Y +V++++  G A  G+IV
Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIV 239

Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L+G++LG H G+I+YTIGQ R      +G+PL+VV LD    +VIVGP+E+L    + +
Sbjct: 240 DLSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPV 299

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD          ++   K+RS++ P    ++  +D    V+    E GV+ GQA
Sbjct: 300 REINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY     ++R+LGGG I
Sbjct: 358 CVFYA--PGDSRILGGGWI 374


>gi|307691533|ref|ZP_07633770.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcaceae bacterium D16]
          Length = 361

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 136/364 (37%), Positives = 196/364 (53%), Gaps = 14/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVCD 81
           +  AMSGGVDSS    LL++ GYD +G T+ L++       ++  C   +DV DA+ V  
Sbjct: 4   IAAAMSGGVDSSTAVWLLQQAGYDPVGFTMSLFSPDALPPDQRSQCHTARDVADAQAVAQ 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +SH+  D  E F   V+ PF  +Y  G+TP PCV CNR +KF  LL   +++G  +L
Sbjct: 64  RLGISHHTLDLSESFCREVMDPFVQAYEQGQTPNPCVLCNRAIKFGALLQAAQEMGCPLL 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +      D G  R ++ + +  ++DQSY L+  TQQQL   RFPLG + KE +R
Sbjct: 124 ATGHYAQVE---QDSGSGRWLLKKALHPDKDQSYVLWTLTQQQLAATRFPLGQLSKEEIR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E GL  A KSDSQDICFV  G Y   +          GD V   G +LGRH GII+
Sbjct: 181 AIALEQGLVSARKSDSQDICFVPDGDYASFICHHTGKHYPSGDFVDPQGNVLGRHQGIIH 240

Query: 262 YTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           YT+GQRRGLGV+  +  L+V  L    + V +G   +L    +   ++N +      + +
Sbjct: 241 YTLGQRRGLGVSSNQGRLYVTGLSPQDNTVTLGSNAALLHRSLTAGQLNLIAM----ERL 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +   K+R      P  +++   D   + F++ +  +  GQ+ VFY  D     VLG
Sbjct: 297 DQPIQVMAKVRYRMTEQPAILEQTGPDTARLTFQEPQRAITPGQSVVFYQDDV----VLG 352

Query: 380 GGII 383
           GGII
Sbjct: 353 GGII 356


>gi|323141806|ref|ZP_08076673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413729|gb|EFY04581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 357

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 137/366 (37%), Positives = 207/366 (56%), Gaps = 13/366 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
           + + ++AMSGGVDSSV A ++    Y+  GVT++L+ N      +  SCC+  DV DAR 
Sbjct: 2   NKKALIAMSGGVDSSVSALMMLEQDYECTGVTMKLFANEDIGVSKANSCCSIDDVADARS 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  ++ + +YVF++ +RF   VI  F  +Y  G TP PC+DCNR +KF  L    ++LG 
Sbjct: 62  VATSLGMLYYVFNFADRFERDVIDRFVDAYVNGRTPNPCIDCNRYLKFDQLFVRAQELGC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY +      D+ K R ++ + +D  +DQSY L+A TQ+QL    FPLG + K 
Sbjct: 122 DYVVTGHYAQISY---DEAKGRYLLRKAVDPLKDQSYVLYALTQEQLAHAMFPLGGLYKT 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR++A + G   A K DSQDICF+Q G Y D ++         G+ V   G +LGRH G
Sbjct: 179 QVREIAEKHGFVNAQKHDSQDICFIQTGTYADFIEARLGRKFNPGNFVDEAGNVLGRHKG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           II+YT+GQR+GLG+A+ +P++V  +D  ++ VI+   E L    +  + IN +      D
Sbjct: 239 IIHYTVGQRKGLGLALPQPMYVKEIDTKNNAVILTTNEGLFTKNVTAKNINLIDC----D 294

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A+ +  +   +IR  Q      V + D D + + F+  +  +  GQ+ V Y  D     V
Sbjct: 295 AITEPRRVKARIRYHQQEQWATVTQPDADTLQLVFDDPQRAITKGQSVVMYDGDV----V 350

Query: 378 LGGGII 383
           +GGG I
Sbjct: 351 VGGGTI 356


>gi|124268750|ref|YP_001022754.1| tRNA-specific 2-thiouridylase MnmA [Methylibium petroleiphilum PM1]
 gi|166234857|sp|A2SLT0|MNMA_METPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|124261525|gb|ABM96519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylibium petroleiphilum PM1]
          Length = 396

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/408 (29%), Positives = 180/408 (44%), Gaps = 52/408 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +      +    C + QD  DA
Sbjct: 2   SAKKERVVVGLSGGVDSAVSAWLLKQQGHEVVGLFMKNWEDDDDDE---YCSSRQDFLDA 58

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I +     ++   +R+ V   F   Y AG TP P V CN  +KF   L    +L
Sbjct: 59  ASVADVIGIEIEHVNFAAEYRDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHALRL 118

Query: 137 GADVLATGHYIRSRLYVG----------------------DDGKRRRIMCRPMDLERDQS 174
           GA  +ATGHY R R                           +   R  + + +D  +DQS
Sbjct: 119 GAGKIATGHYARVRRAPALPGMPDGPLDESSAGALDRARVREAGGRFELLKGLDASKDQS 178

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           YFL   +Q QL    FP+G++ K  VR +A E+ L +A K DS  ICF+ +  + + + R
Sbjct: 179 YFLHRLSQAQLARTLFPVGELPKTEVRRIAAEIRLPVAAKKDSTGICFIGERPFREFLNR 238

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLFVVY 282
             A     G I    G+ LG H G+  YT+GQR+G+G+                P FV  
Sbjct: 239 YLAHA--PGPIKDERGRTLGEHVGLSFYTLGQRKGIGIGGVKERGAARGGADHAPWFVAR 296

Query: 283 LDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            D+  + + V        L+  R+   + +W+                 K R  Q     
Sbjct: 297 KDRPHNTLYVVQGHDHPWLQSFRLEADDASWIAGTPPAPGA-----LAAKTRYRQADASC 351

Query: 340 FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            +    DG   +DF   +  V  GQ+ V Y  +      LGGG+I+ +
Sbjct: 352 VLAPGADGRFRLDFGVPQWAVTPGQSAVLYDGEV----CLGGGVIAAA 395


>gi|320536235|ref|ZP_08036280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema phagedenis F0421]
 gi|320146893|gb|EFW38464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema phagedenis F0421]
          Length = 359

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 203/374 (54%), Gaps = 16/374 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++V +SGGVDS+V A LL   G++V GVT+Q+ +      +       QD+ DAR + 
Sbjct: 1   MKILVGLSGGVDSAVAAKLLLEQGHEVSGVTMQMISPVGEIIKS----QEQDIADARAIA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T+ +  +  D    FR  ++  FA +Y  G TP PC  CN+ +KF  LL    + G D 
Sbjct: 57  NTLGIDFFTLDLRSAFREEIMNYFAETYKQGLTPNPCFICNKKMKFRRLLDAALERGFDA 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    + D    R ++ +  D ++DQSYFL    Q QL  + FPLG+  K  V
Sbjct: 117 IATGHYAQ---IMRDLKTGRYLLLQGSDSKKDQSYFLALLNQFQLAHIMFPLGNYTKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A + DSQDICFV  G Y  +V+ +      EG+ +   G+I+G+H G+ 
Sbjct: 174 RKIAEKAGLISAHRPDSQDICFVPNGDYAKIVEALLPETFTEGNFLDTKGKIIGKHRGLH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGL +A GEP++VV  D  ++ V VG  E+L    +    +N++      + +
Sbjct: 234 HYTIGQRRGLALAFGEPVYVVSKDAKTNTVCVGSSENLFASALVAENVNFIAV----EKL 289

Query: 321 VDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            +   C VK R  Q+ +P   +   +D + V+F + E  VA+GQA V Y        V  
Sbjct: 290 TEPIVCTVKTRYRQNEIPARLIPITEDSLRVEFLQPERAVAAGQALVCYKD----GAVFA 345

Query: 380 GGIISGSKRSDAVE 393
           GGII+  +     +
Sbjct: 346 GGIITAVEPWAKPQ 359


>gi|260752750|ref|YP_003225643.1| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552113|gb|ACV75059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 370

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/379 (49%), Positives = 246/379 (64%), Gaps = 21/379 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             +DK     R+VVAMSGGVDSSVVAAL K  G + IG+TLQLY+   A  RKGSCCAG+
Sbjct: 5   FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V + I + HYVFDYE  F+ +VI  F S Y AG TP+PC+ CN+ VKF+DLL+
Sbjct: 65  DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R+LGAD LATGHY+R  +        R  M R +D  RDQSYFLFATT++QL  LRFP
Sbjct: 125 VARELGADCLATGHYVRRLVNND-----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K+DSQDICFV  G Y  +V+         GDIV + G+
Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +LG+H+G+I++T+GQRRGL +    EPL+V+ LD    +++VGPR++L V +  ++E+NW
Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           L DG             VKIRS+  PV        DG  + FEK E GV+ GQA VFY  
Sbjct: 300 LVDGFDRGM-------QVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFYDG 348

Query: 371 DSNEARVLGGGIISGSKRS 389
           D    +VLGGG I  +  +
Sbjct: 349 D----QVLGGGWIKETTPA 363


>gi|323142835|ref|ZP_08077547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Succinatimonas hippei YIT 12066]
 gi|322417377|gb|EFY07999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Succinatimonas hippei YIT 12066]
          Length = 374

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 27/382 (7%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  +   VV+ +SGGVDSS+ AALLK +G  V  + ++ +           C A  D  D
Sbjct: 10  KELQGAHVVIGLSGGVDSSLSAALLKENGMKVTALFMKNWEEDDTD---TVCAAAADRED 66

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A++VCD + +     ++   + + V   F S Y AG TP P + CN+ +KF         
Sbjct: 67  AQKVCDKLGIELKTINFAAEYWDRVFENFLSEYQAGRTPNPDILCNKEIKFKAFFDYALT 126

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            L AD +ATGHY +       +      + R +D  +DQ+YFL A     L  + FP+G 
Sbjct: 127 DLHADFIATGHYAQRSF----NDPLAAHLLRSVDKNKDQTYFLHAIGPNVLHKVLFPVGA 182

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E GL  A K DS  ICF+ + ++ + ++      A  G I+ ++GQ +G
Sbjct: 183 IEKPQVRLMAEERGLVTARKKDSTGICFIGEKRFHEFLQHYLP--AHSGPIITVDGQTVG 240

Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H+G++  TIGQR+GL +       GEP +VV  D  ++ +I+       +L    +  +
Sbjct: 241 EHDGLMFATIGQRKGLHIGGSKDGSGEPWYVVDKDIKNNALIIAQGHNHPALYSKGLMAQ 300

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              WL      +A    FKC  KIR  Q  V   V R ++ + V F+     VA GQ+ V
Sbjct: 301 NETWLV-----EAPQMPFKCTCKIRYRQPDVNCTVYRENNELKVLFDNKVAAVAPGQSVV 355

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
           FY      +  LGG II+ + +
Sbjct: 356 FYQG----SECLGGAIINTAIK 373


>gi|295102218|emb|CBK99763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii L2-6]
          Length = 370

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 196/367 (53%), Gaps = 13/367 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++AMSGGVDSSV A L++RDG+D  GVT++L  N    ++   +CC+ +D+ DA  V   
Sbjct: 14  LIAMSGGVDSSVAAWLMQRDGFDCTGVTMRLTRNEAVNTEGLHTCCSERDIEDAAEVAYA 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++ + V D+   F+  +I  F   Y AG TP PC+DCNR +KF  LL      G D + 
Sbjct: 74  MDIPYEVLDFTADFQERIIDKFIRVYEAGGTPNPCIDCNRYMKFDHLLRWAEAHGLDHVV 133

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      D+   R ++ + +D  +DQSY L+  TQ+QL  +R PLG + K  VR 
Sbjct: 134 TGHYARVE---QDEATGRWLLKKGLDENKDQSYVLYNLTQEQLAHVRLPLGGLHKSEVRA 190

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A +     A K DSQDICFV  G Y   ++         GD + + G+ +G H+G + Y
Sbjct: 191 IAEQQHFVNARKHDSQDICFVPDGDYARFMEEFTGKHYPAGDFLDVGGKKVGTHSGAVRY 250

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+AMG P++V   D  ++ V VGP   L    +Y  E+NW+        +  
Sbjct: 251 TIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPESELFDTIVYANEVNWIAI----PELKG 306

Query: 323 GFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   + R  Q   P  V     D   ++F++ +     GQA V Y  D     VLGGG
Sbjct: 307 PLRVTARTRYHQTEQPATVYPAGPDSFRLEFDQPQRAPTPGQAVVLYQGDV----VLGGG 362

Query: 382 IISGSKR 388
            I+   +
Sbjct: 363 TITQVAK 369


>gi|300814306|ref|ZP_07094578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511573|gb|EFK38801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 351

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 183/372 (49%), Gaps = 28/372 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +         G C A +D  D  +
Sbjct: 2   KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADD------GICTATEDYMDVVK 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + ++  ++EE +RN V   F + Y  G TP P V CN  +KF   L+       
Sbjct: 56  VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R++   G     +  +CR +D  +DQSYFL   T+  L    FP+G+++K+
Sbjct: 116 DYIAMGHYARTKNIDG-----KTYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A++ GL  A K DS  ICF+ +  +   + +        G IV   G +LG H+G
Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQFL--FTKPGKIVDTQGNVLGEHSG 228

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           +I+YTIGQRR     G   GEP FV   D  ++ +IV       +L      + ++ W+ 
Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K  VKIR         ++ N+   +V  +    GV  GQ  VFY  + 
Sbjct: 289 G-----KPHFPLKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFYNDEI 343

Query: 373 NEARVLGGGIIS 384
                LG GII 
Sbjct: 344 ----CLGSGIIK 351


>gi|118602730|ref|YP_903945.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166235080|sp|A1AX17|MNMA_RUTMC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118567669|gb|ABL02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 363

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 180/379 (47%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    K+ +++V +SGGVDSSV   LL + GY V  + ++ +       + G C   QD+
Sbjct: 1   MKNLNKNTKIIVGLSGGVDSSVATLLLLKQGYQVEALFMKNWEEDD---KSGYCSVEQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+++ D ++V  +  ++   + N V + F   +  G TP P V CN+ +KF   L   
Sbjct: 58  SDAQKIADKLDVKLHAVNFSADYWNDVFIHFLKEHKKGRTPNPDVLCNQKIKFRVFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R       +      +   +D  +DQSYFL    Q QL    FPLG
Sbjct: 118 LSLGADKIATGHYARIA-----EKNGTYQLKTGLDDSKDQSYFLHLLNQYQLSKSLFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K  VR++A E G   A+K DS  ICF+ +  + + +    +    +GDIV   GQ +
Sbjct: 173 EINKIDVRNIAIENGFVTANKKDSTGICFIGERNFSEFLATYLSK--QQGDIVDEQGQFI 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSR--VIVGPRESLEVHRIYLR 306
             H G+  YTIGQR+GL +       GEP FV       +   ++ G    L    +   
Sbjct: 231 KHHQGLAFYTIGQRKGLKIGGGFGKSGEPWFVADKCIERNELMIVQGNHALLYHQILSAS 290

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + +W+              C  KIR  Q      + +ND+  + V F++ +  +  GQ+ 
Sbjct: 291 KPHWIS-----TPPTLPLMCSAKIRYRQQSQSCMISQNDNKQIKVVFKQLQRAITPGQSI 345

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY +       LGG II 
Sbjct: 346 VFYDN----KTCLGGAIIE 360


>gi|221639030|ref|YP_002525292.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides KD131]
 gi|254811459|sp|B9KR64|MNMA_RHOSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221159811|gb|ACM00791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides KD131]
          Length = 379

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/379 (49%), Positives = 242/379 (63%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P   RVVVAMSGGVDSSVVAA L  +GYDV+GVTLQLY+   A  +KG+C
Sbjct: 5   PLNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGAC 64

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF 
Sbjct: 65  CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT +QL  
Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GPAGPELHCAADPARDQSYFLFSTTPEQLAF 179

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K   R LA   GL +ADK DSQDICFV  G Y +V++++  G A  G+IV
Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIV 239

Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L+G++LG H G+I+YTIGQ R      +G+PL+VV LD    +VIVGP+E+L    + +
Sbjct: 240 DLSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPV 299

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD          ++   K+RS++      ++  +D    V+    E GV+ GQA
Sbjct: 300 REINWLGDAPLTSR--SEWQVMAKVRSTRASREAVIRPLSDTEAEVELIAPEDGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVFY     ++R+LGGG I
Sbjct: 358 CVFYA--PGDSRILGGGWI 374


>gi|282881825|ref|ZP_06290478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus lacrimalis 315-B]
 gi|281298317|gb|EFA90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus lacrimalis 315-B]
          Length = 351

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 184/372 (49%), Gaps = 28/372 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +         G C A +D  D  +
Sbjct: 2   KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADD------GVCTATEDYMDVVK 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + ++  ++EE +RN V   F + Y  G TP P V CN  +KF   L+       
Sbjct: 56  VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R++   G     +  +CR +D  +DQSYFL   T+  L    FP+G+++K+
Sbjct: 116 DYIAMGHYARTKNIDG-----KTYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A++ GL  A K DS  ICF+ +  +   + +        G IV + G +LG H+G
Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQFL--FTKPGKIVDIQGNVLGEHSG 228

Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           +I+YTIGQRR     G   GEP FV   D  ++ +IV       +L      + ++ W+ 
Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       K  VKIR         ++ N+   +V  +    GV  GQ  VFY  + 
Sbjct: 289 G-----QPHFPLKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFYNDEI 343

Query: 373 NEARVLGGGIIS 384
                LG GII 
Sbjct: 344 ----CLGSGIIK 351


>gi|298490709|ref|YP_003720886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           ['Nostoc azollae' 0708]
 gi|298232627|gb|ADI63763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           ['Nostoc azollae' 0708]
          Length = 351

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 145/367 (39%), Positives = 208/367 (56%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA+L   GYDVIG+TL L       K KG CC+   + DA  VC
Sbjct: 2   KKVVVGLSGGVDSSVAAAMLHNQGYDVIGLTLWLM------KGKGQCCSEGMI-DAASVC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + + H V D  + F+  ++    S Y+ G TPLPC  CN+TVKF  ++   R+ LG++
Sbjct: 55  EQLGIPHEVVDIRDVFQANIVDYLLSGYSMGITPLPCSQCNKTVKFGPMVEYAREKLGSN 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + R    D+   R  + R +   +DQSYFL+  +Q  L    FPLG++ K  
Sbjct: 115 AIATGHYAQVRY---DETTGRYKLLRAVYRNKDQSYFLYDLSQDLLSASVFPLGELNKTD 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C V+  G     + R    +   GDI+   G++LG+H+G
Sbjct: 172 TRRIAAEYGLTTADKPESQDLCLVESNGSMRAFLDRYL--VPKPGDILDTTGKVLGQHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+G+G+A  EPL+V+ LD  ++RV+VG R         L  +NW+       
Sbjct: 230 VHHYTIGQRKGIGIAADEPLYVIELDAVNNRVVVGERTKGTQSECTLNRVNWVSIA---- 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +  V+IR    PVPV V   +D  V + F++ +  +  GQA V+Y  D    +V
Sbjct: 286 EPATPIRAEVQIRYRSQPVPVTVIPLEDFRVRLVFDEPQFSITPGQAAVWYEGD----KV 341

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 342 LGGGIIE 348


>gi|71892171|ref|YP_277903.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123640946|sp|Q492R5|MNMA_BLOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71796277|gb|AAZ41028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 367

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 28/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +    +++    C +  D+ D   VC
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYKVEGLFMKNWEDDDSTE---QCASASDLSDTHSVC 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           D + +  +  ++ + +   V   F   Y+ G TP P + CN+ +KF   L    Q L AD
Sbjct: 64  DNLGIYLHTINFSKEYWENVFQVFLQEYSVGRTPNPDILCNKEIKFKYFLEFALQDLDAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY+R       D  ++  + R +D  +DQSYFL+  + +QL    FP+G + K  
Sbjct: 124 LIATGHYVRRV-----DMNKKTYLIRGVDRNKDQSYFLYTLSYKQLKQCLFPVGTLNKFQ 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A+++ L  A+K DS  ICF+ + K+ D + +        G I+ +NG  +G H G+
Sbjct: 179 VRNIAKKLNLITANKKDSTGICFIGKRKFKDFISKYIP--IRPGVIIDINGNTIGAHQGV 236

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT+GQR+GL +       G+P +V+  D +++ +I         L        +  W+
Sbjct: 237 SFYTLGQRKGLKIGGVKQGNGQPWYVIDKDTSNNTLIAAQGRNHPRLMSIAFITEQTQWV 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
                 DA+     C VK R     +   +    ++ + V  +   + +  GQ+ VFY  
Sbjct: 297 ----KRDALTSPLHCTVKTRYRHPDIQCQIYPLLNNNLKVILKIPVLAITPGQSAVFYLK 352

Query: 371 DSNEARVLGGGIISG 385
           +    R LGGGII+ 
Sbjct: 353 E----RCLGGGIITK 363


>gi|144899505|emb|CAM76369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 360

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 191/370 (51%), Positives = 245/370 (66%), Gaps = 17/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R+VVAMSGGVDSS  AALLK  G+DV+GVTLQLY+  +A  R  +CCAG+D++DAR V
Sbjct: 4   KGRIVVAMSGGVDSSATAALLKEQGWDVVGVTLQLYDHGQAVCRPNTCCAGKDIHDARTV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HYV D E  F   V+  FA SY  GETP+PCV CN+TVKF DL S+ R LGAD
Sbjct: 64  ADVLGIPHYVMDMESTFHADVVDKFAESYIRGETPIPCVLCNQTVKFRDLFSIARDLGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKKE 198
            LATGHY++ +     D     IM +  D  RDQSYFLF+TT++QL  LRFPLG  + K+
Sbjct: 124 ALATGHYVQRQ-----DSANGAIMLKGADPGRDQSYFLFSTTREQLEFLRFPLGGFLSKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
             R +A    L +A K DSQDICFV  G Y  +V+R+  G    G IVH+ +G+ LGRH 
Sbjct: 179 ETRAIAARYNLPVAAKRDSQDICFVPDGDYAGLVQRLKPGAIRPGAIVHVEDGRELGRHQ 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GII+YTIGQR+GLG+  G+PL+V+ L+   ++V+VGPRE+L   RI +R +NWLGDG   
Sbjct: 239 GIIHYTIGQRKGLGLGGGDPLYVIRLEAEKAQVVVGPREALGRSRITVRGVNWLGDGDGA 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D     F C V++RS++ P+P  V+ +   G  V  +  E GVA GQACVFY  D    R
Sbjct: 299 D-----FVCQVRVRSTRPPMPARVRLDGQGGGLVMLDMPEQGVAPGQACVFYDGD----R 349

Query: 377 VLGGGIISGS 386
           VLGGG I G+
Sbjct: 350 VLGGGWIVGA 359


>gi|171057122|ref|YP_001789471.1| tRNA-specific 2-thiouridylase MnmA [Leptothrix cholodnii SP-6]
 gi|205816874|sp|B1XX60|MNMA_LEPCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170774567|gb|ACB32706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptothrix cholodnii SP-6]
          Length = 380

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 179/389 (46%), Gaps = 34/389 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+VV +SGGVDS+V A LLK+ G++V+ + ++ +     S+    C + QD  DA 
Sbjct: 6   PPKQRIVVGLSGGVDSAVSAWLLKQQGHEVVAIFMKNWEDDDDSEF---CSSRQDFLDAA 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D + +     ++   +++ V   F   Y+AG TP P V CN  +KF   L    +LG
Sbjct: 63  SVADVLGIEIEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY R R            + + +D  +DQSYFL    Q QL    FP+G++ K
Sbjct: 123 ADRIATGHYARVRHNPA---TGLHELLKGLDPLKDQSYFLHRLNQAQLASTLFPVGELPK 179

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A E+GL  A K DS  ICF+ +  + + + R  +     G I    G+ +G H 
Sbjct: 180 TEVRRIALEIGLPNAKKKDSTGICFIGERPFREFLNRYLSHE--PGPIKDDRGRRIGEHV 237

Query: 258 GIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRV--IVGP-RESLEVHR 302
           G+  YT+GQR+G+G+               EP FV   D  S+ +  + G     L+  R
Sbjct: 238 GLSFYTLGQRKGIGIGGLKEKGAPRGGGEHEPWFVARKDLASNTLYAVQGHDHPWLQSQR 297

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY---VDFEKSEVGV 359
           +   + +W+G                K R  Q      V   D       + F   +  V
Sbjct: 298 LSADDASWIGTVPQPGQGG----LAAKTRYRQADSACAVDALDAAARTLSMSFPAPQWAV 353

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKR 388
             GQ+ V Y  +      LGG +I+ + +
Sbjct: 354 TPGQSVVLYEGEV----CLGGAVIAAADQ 378


>gi|260886459|ref|ZP_05897722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sputigena ATCC 35185]
 gi|260863841|gb|EEX78341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sputigena ATCC 35185]
          Length = 344

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 138/360 (38%), Positives = 201/360 (55%), Gaps = 19/360 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSS+ AALL+  GY+V+G+T+QL +  +               DARRV D + + 
Sbjct: 1   MSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMN-----GVSSAATDARRVADFLGIE 55

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H V D+   F + V+  F + Y    TP PCV CNR +KF +LLS  ++ GAD LATGHY
Sbjct: 56  HVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADFLATGHY 115

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R    V  +      + +  D ++DQSY L+   ++ L  + FPLG  +KE  R LA++
Sbjct: 116 VR----VEKEEDGSFSLKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEETRALAQK 171

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           + L +A+K++SQ+ICFV +  Y   + +        GDIV + GQILG+H G+  YTIGQ
Sbjct: 172 LSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGLPFYTIGQ 231

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           R+GLG+A   PL+V+ LD+ ++RVIVG  E L    ++  ++NWL      +        
Sbjct: 232 RKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLM-----EEPTQEISV 286

Query: 327 FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             KIR     V   V   +DG V V F + +  V  GQ+ VFY+ +    R++GG  I  
Sbjct: 287 HAKIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLVGGATIES 342


>gi|193215134|ref|YP_001996333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088611|gb|ACF13886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 365

 Score =  441 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 195/377 (51%), Gaps = 21/377 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN----SRKASKRKGSCCAGQDVYD 75
             +V+V MSGGVDSSV A LL  +G++VIGVTL  +     +   S+ + +     +  +
Sbjct: 2   KKKVIVGMSGGVDSSVAACLLAEEGFEVIGVTLHTWEKLPKTNNDSEEQNALSPTHEHEE 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A+++       H+  D+ E F+  VI  F S Y  G TP PCV CN  +K+  LL   ++
Sbjct: 62  AKQIAAAKGFLHFTIDFREAFQREVIDYFKSEYLLGRTPNPCVICNTKIKWQALLQEAKR 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  +ATGHY R     G     R  + +  D  +DQSY L+  +Q+ L   RFPL D 
Sbjct: 122 HGAAYIATGHYARVAKQEG-----RFRLLQGCDASKDQSYVLWGLSQEILEKARFPLADY 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
            K+ VR LAR+  L +A+K +SQ+ICF+    Y   +K     +A +   G I+  N   
Sbjct: 177 TKDEVRALARKYDLPVAEKDESQEICFIPDNNYERFLKDALPNLAEKIAGGKILDTNQNE 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG+H G   YTIGQRRGLG++   P++V  +    + ++VG ++ L    +   ++NW+ 
Sbjct: 237 LGKHRGYPFYTIGQRRGLGISTPAPVYVTDIHAEDNTIVVGSKDDLLHSGLIATDLNWIA 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                  + + F+   KIR      P  V   + G V V FE  +  +  GQA VFY+ +
Sbjct: 297 FS----KLQEPFQAEAKIRYKDTAEPCVVTPLETGCVQVTFETPKRAITPGQAVVFYSGE 352

Query: 372 SNEARVLGGGIISGSKR 388
                +LGGG I  + +
Sbjct: 353 ----ELLGGGFIQKAIQ 365


>gi|169334729|ref|ZP_02861922.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257467|gb|EDS71433.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM
           17244]
          Length = 354

 Score =  441 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 179/368 (48%), Gaps = 27/368 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDS+V A LLK+ GYDVIG+ ++ ++    +   G C A +D  DAR VC  +N+ 
Sbjct: 1   MSGGVDSTVSAYLLKKQGYDVIGLFMKNWDE---TDENGECSAEEDYDDARAVCLKLNIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145
            Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L      L AD +ATGH
Sbjct: 58  CYTVNFTKEYWDNVFTYFLDEYKKGRTPNPDVLCNKEIKFKCFLDYAINVLNADYIATGH 117

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y +      +  K    + +  D  +DQ+YFL    ++QL  + FPL D++K  VR++A 
Sbjct: 118 YAKV-----EHTKEGTRLLKAKDQHKDQTYFLSLLKEKQLERVIFPLADVEKGEVREIAE 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTI 264
             G   A K DS  ICF+ +  +   ++         GD++ ++ G+  G H G++ YT+
Sbjct: 173 REGFRNAKKKDSTGICFIGERNFTQFLQNYLPN--QPGDMIDMDTGEKKGEHIGLMYYTL 230

Query: 265 GQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           GQRR     G   GE  +V   D N++ + +        L  +     ++N +      D
Sbjct: 231 GQRRGLGVGGCGSGERWYVADKDLNNNILYIVQGDKNPKLYKNGFIATDVNMISGHYPSD 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F+C ++ R  Q      V+  D+    V F++ + GV  GQ  VFY  +      
Sbjct: 291 K----FECEMRFRHLQPLKKATVEVIDESTARVIFDEEQSGVTPGQIAVFYDGEV----C 342

Query: 378 LGGGIISG 385
           LGGG I  
Sbjct: 343 LGGGTIDK 350


>gi|298206785|ref|YP_003714964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Croceibacter atlanticus HTCC2559]
 gi|83849417|gb|EAP87285.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Croceibacter atlanticus HTCC2559]
          Length = 396

 Score =  441 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/405 (30%), Positives = 194/405 (47%), Gaps = 50/405 (12%)

Query: 21  MR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+ VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V
Sbjct: 1   MKSVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDTVT-ISDECPWLDDSNDAMLV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD
Sbjct: 60  AEKLGIPFQTVDLSEEYKERIVDYMFNEYKNGRTPNPDVLCNREIKFDVFMKIAMSLGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +  +  DG+    +    D  +DQSYFL   +Q+QL    FP+G+++K  
Sbjct: 120 YVATGHYCR-KSSIEKDGETIYQLLSGKDNNKDQSYFLCQLSQEQLSKTLFPIGELQKSE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248
           VR +A E  L  ADK DSQ +CF+ + +  D +++       EGDIV +           
Sbjct: 179 VRKIAAEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLK--PKEGDIVEIDSTLDQYAKDT 236

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284
                                  +G+++G+H G   +T GQR+GLG     EPLFV+  D
Sbjct: 237 KEDFNTTEEELAYLSKKFTYNFEDGKVVGKHQGAHYFTKGQRKGLGVGGTPEPLFVIDTD 296

Query: 285 KNSSRVIVG---PRESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + +  G       L    +++   EI+W+ + L  D   D      +IR  Q     
Sbjct: 297 VEENIIYTGQGKQHPGLYRRGLFVSPHEIHWIREDLKLDT-GDTMNVMARIRYRQTLEKA 355

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + + G+YV F+  +  +A GQ   +Y  +     ++G G+IS
Sbjct: 356 TLHQTEHGLYVIFDNPQSAIAEGQFVAWYQDE----ELIGSGVIS 396


>gi|329119430|ref|ZP_08248115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464363|gb|EGF10663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 365

 Score =  441 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 183/375 (48%), Gaps = 24/375 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              +VV +SGGVDSSV AALLK+ G+ V GV +Q +      +    C   QD +DA  V
Sbjct: 5   QHNIVVGLSGGVDSSVTAALLKQQGHSVRGVFMQNWEDDDNDE---YCSIKQDSFDAIAV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L    + GAD
Sbjct: 62  ADIIGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYALEQGAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ATGHY R  +  G     R  + + +D  +DQSYFL+     QL    FPLG ++K  
Sbjct: 122 VIATGHYARKEIIGG-----RHCLLKGLDGNKDQSYFLYRLKPHQLERAVFPLGGLEKPE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA    L  A K DS  ICF+ +  + + +++        G ++   G+ +G H G+
Sbjct: 177 VRRLAEAFKLPTAAKKDSTGICFIGERPFREFLQQYLP--TNPGKMITPEGKTMGEHVGL 234

Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREINWLGDGL 315
             YTIGQR+GLG+   GEP FV   +   +   V+ G     L  + + + ++++     
Sbjct: 235 TFYTIGQRKGLGIGGAGEPWFVAGKNLPRNELLVVQGHDHPLLYTNSLVMNDLSFTLPER 294

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +       +   K R      P  ++  ++D   + F+  +  V  GQ+ V Y  D   
Sbjct: 295 PKPG-----RYTCKTRYRMADAPCELRYLDEDTAELVFDMPQWAVTPGQSAVLYDGDV-- 347

Query: 375 ARVLGGGIISGSKRS 389
              LGGGII  + + 
Sbjct: 348 --CLGGGIIVSTDKP 360


>gi|56416599|ref|YP_153673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma marginale str. St. Maries]
 gi|222474965|ref|YP_002563380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Florida]
 gi|269958985|ref|YP_003328774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma centrale str. Israel]
 gi|81359210|sp|Q5PBB1|MNMA_ANAMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56387831|gb|AAV86418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma marginale str. St. Maries]
 gi|222419101|gb|ACM49124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Florida]
 gi|269848816|gb|ACZ49460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma centrale str. Israel]
          Length = 387

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/384 (46%), Positives = 245/384 (63%), Gaps = 15/384 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   +  L+ L   K P++  VVVAMSGGVDSSVVAALL   GY VIG T+QL++S  A
Sbjct: 9   MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 68

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           S  K SCC   D+YDA+RV  T+   HYV DYEE FR  VI  F +SY  GETP+PCV C
Sbjct: 69  SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 127

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF D+L   R +G DV+ATGHY+R     G+       + R  D ++DQSYFLF+ 
Sbjct: 128 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGEQ-----QILRGKDPQKDQSYFLFSV 182

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T +QL  LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV +  Y +V++ ++    
Sbjct: 183 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 242

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IVH++G++LG H+GI N+T+GQRRGL ++   PL+VV LD   + V+VGP+ +L  
Sbjct: 243 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 302

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359
             ++++ +NWL D    +    G     ++RSS   V   +  + DG   V  E+  V V
Sbjct: 303 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCV-V 358

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           + GQACV Y  +    R+LGGG I
Sbjct: 359 SPGQACVLYDKE----RLLGGGWI 378


>gi|294010267|ref|YP_003543727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sphingobium japonicum UT26S]
 gi|292673597|dbj|BAI95115.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sphingobium japonicum UT26S]
          Length = 373

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/373 (51%), Positives = 237/373 (63%), Gaps = 21/373 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL   P   R+VVAMSGGVDSSVVAAL  R G + IGVTLQLY+   A  R GSCCAGQ
Sbjct: 10  FDLKAPPDARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTGSCCAGQ 69

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D I ++HYVFDYE RFR++VI  FA  Y AG TP+PCV CN  VKF+DL  
Sbjct: 70  DIRDARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQ 129

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R       +G +   + R  D  RDQSYFLFATTQ QL  LRFP
Sbjct: 130 IARDLGADCLATGHYVRRV-----EGPQGAELHRAADSARDQSYFLFATTQAQLDYLRFP 184

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+GL +A K DSQDICFV  G Y  +V+++       GDIVH++G+
Sbjct: 185 LGGLPKPQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGDIVHIDGR 244

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++G H G+I+YT+GQR+GL +    EPL+VV LD  + RVIVGP+ +L V    L +INW
Sbjct: 245 LMGTHKGMIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAARLSDINW 304

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           LG                K+RS   PVP  ++ +     + F+  E GVA GQA V Y  
Sbjct: 305 LGGDFAGP-------LTAKVRSMAKPVPARLEGD----RLVFDAPEYGVAPGQAAVLYAG 353

Query: 371 DSNEARVLGGGII 383
           D    RVLGGG I
Sbjct: 354 D----RVLGGGWI 362


>gi|225573524|ref|ZP_03782279.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039121|gb|EEG49367.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM
           10507]
          Length = 362

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 15/371 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
            RVV+ MSGGVDSSV A LLK+ GY+V+GVT++ +     S    G   + + + DA+ V
Sbjct: 4   KRVVIGMSGGVDSSVAAYLLKKAGYEVLGVTMKTWTPVSESADDPGLGGSPEVIEDAKEV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +S+YV D++  F + V+  F   Y  G TP PCV CNR VK+  LL+  ++LGAD
Sbjct: 64  ARALGISYYVVDFQRDFSDYVVDYFTQEYLEGRTPNPCVVCNRYVKWEALLNKAKELGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R  +       +DQ+Y L+  TQ QL     P+GD  KE 
Sbjct: 124 YIATGHYARIVCL----ENGRYALKTCEVSAKDQTYALYNLTQAQLAHTLMPVGDYNKEE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A ++GL +ADK DSQ+ICF+    Y + +++       +G+ V   G ++G+H GI
Sbjct: 180 IREIASKIGLPVADKPDSQEICFIPDHDYANFIRQRTGKEVCQGNFVTAGGTVVGQHRGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I+YTIGQR+GL ++MG P+FV  +   ++ V++G  + +    +   +IN++G   FE  
Sbjct: 240 IHYTIGQRKGLNLSMGRPVFVTEIRPKTNEVVIGDAQEVFASALRCTKINYMGIEKFE-- 297

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             +G +   KIR +    P ++++   D  V   F + +  +  GQA VFY     E  V
Sbjct: 298 --EGMELLAKIRYNHKGAPCWIEKVLPDGDVICRFAQPQRAITPGQAVVFYQ----EGYV 351

Query: 378 LGGGIISGSKR 388
             GG I  + +
Sbjct: 352 AAGGTIVTAVK 362


>gi|15838041|ref|NP_298729.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa 9a5c]
 gi|14195287|sp|Q9PDD9|MNMA_XYLFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9106458|gb|AAF84249.1|AE003974_4 tRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 379

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQRETIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADSI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R + Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K  +R
Sbjct: 121 ATGHYARIKHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATMFPIGDLEKPQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQAGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V        L+   +     +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   +DG + VDF +++  V  GQ+ V Y  + 
Sbjct: 294 S----PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTQTQWAVTPGQSLVLYDGN- 348

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 349 ---ECLGGAVIATT 359


>gi|159897370|ref|YP_001543617.1| tRNA-specific 2-thiouridylase MnmA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|205816856|sp|A9AYA7|MNMA_HERA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|159890409|gb|ABX03489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 357

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 141/368 (38%), Positives = 211/368 (57%), Gaps = 16/368 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++VAMSGGVDSS+ A LLK  G+DV GVT+ L+        +  CC+ +    ARRVC 
Sbjct: 3   KIMVAMSGGVDSSLTAVLLKEQGHDVTGVTMHLWEGDDNGIMESQCCSVEMTAGARRVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++ +YVF+Y++ FR  VI  F   Y++G TP PC+ CNR +KF  LL     LG D L
Sbjct: 63  QYDIPYYVFNYQKDFRKHVIDYFLREYSSGATPNPCLACNRDLKFRVLLERAELLGFDGL 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGH+++    +   G++   + R +D+ +DQSY L+  +Q++L  L FPLG   K  VR
Sbjct: 123 ATGHFVQ----ITGGGEQPYDLRRGIDINKDQSYVLYMLSQRELGRLHFPLGGFTKPQVR 178

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +ARE GL  ADK +S DICF+    Y   +      I   G IV+ +G +LG+H G+  
Sbjct: 179 QMARERGLVTADKPESMDICFIPDNNYRRFLNEERPEIMQPGPIVNRHGTVLGQHKGLPQ 238

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+GLG+A G PLFV+ +D   + +IVG  + LE     + ++  +   +      
Sbjct: 239 YTIGQRKGLGIAAGSPLFVIEIDTVRNLLIVGDADELERRDFVIDDVRSVYGQI------ 292

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           +     V+IR+  + VP  +   +DG +++ +++ +  V  GQA V Y  D    RV GG
Sbjct: 293 EAGIYAVQIRAHGEAVPATITPREDGTLHIRYDQPQRSVTPGQAAVLYRDD----RVFGG 348

Query: 381 GIISGSKR 388
           G I  ++R
Sbjct: 349 GRI-STER 355


>gi|196232683|ref|ZP_03131534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chthoniobacter flavus Ellin428]
 gi|196223143|gb|EDY17662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chthoniobacter flavus Ellin428]
          Length = 363

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 188/372 (50%), Gaps = 16/372 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLKR GYDV+GVT++++     S+ +  CC  Q + DAR V   + V 
Sbjct: 1   MSGGVDSSVAAYLLKRQGYDVVGVTMKVWPQDCISRAEDKCCGPQAIADARGVAHALGVP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D  E F   VI  F   Y  G TP PCV CN  VKF +L    + LGA+ +ATGHY
Sbjct: 61  HYVVDEGENFERLVIDYFTEEYKNGRTPNPCVMCNEKVKFGNLWGKAKALGAEYIATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
                +       R ++ +  D  +DQSYFLF+  Q QL     PLG+M K  +R +AR+
Sbjct: 121 AIIEHHAD-----RAVLRKGRDPRKDQSYFLFSLRQAQLQHAICPLGEMSKPEIRAIARQ 175

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           +GL +A+K DSQ+ICFV    Y   +K  + AG    G I    G  L  H GI  +TIG
Sbjct: 176 LGLKVAEKEDSQEICFVPGNDYKAFLKSHMGAGEFHPGGIYDKAGNRLAEHEGIEMFTIG 235

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE--DAVVDG 323
           QR+GL      P +V+ +D  +S VIVG  E L      +    W          +  + 
Sbjct: 236 QRKGLPGGSPRPRYVIDIDPVTSSVIVGDAEDLITGEFTIDHCMWHPSTSLRAGGSATEP 295

Query: 324 FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
           F+  VKIR         V   ++G   V   K +  V  GQA V Y  D     VLGGG 
Sbjct: 296 FEVNVKIRYGHAGADATVYPGENGEARVRLHKPQRAVTPGQAAVCYRGD----EVLGGGW 351

Query: 383 ISGSKRSDAVEE 394
           I    R  AVE 
Sbjct: 352 I---VRQMAVEP 360


>gi|291531960|emb|CBK97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum 70/3]
          Length = 358

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 139/365 (38%), Positives = 207/365 (56%), Gaps = 13/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
           + + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N      R+ SCC+  DV D R 
Sbjct: 2   NNKAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVDDVRS 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  ++++ +YVF++ +RF   VI  F  +Y  G TP PC+DCNR +KF  L    ++L  
Sbjct: 62  VAYSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDR 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R    V  DG  R ++ + +D  +DQSY L+  TQ+QL    FPLG M+K 
Sbjct: 122 DYVVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGKMRKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R++A   G   A K+DSQDICFVQ G Y D +++       +GD +  NG ++GRH G
Sbjct: 178 QAREIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +I YT+GQR+GLG++  EPL+V  ++  S+ V +   + L    +   +IN +       
Sbjct: 238 VIRYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDGLYSSIVKAGDINLISV----P 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +    +   K+R         V +N + +   F++ +  V  GQA V Y  D+    V+
Sbjct: 294 EIKGEMRVKAKVRYRHTEQWATVTQNGETLTAVFDEPQRAVTCGQALVLYDGDT----VV 349

Query: 379 GGGII 383
           GGG I
Sbjct: 350 GGGTI 354


>gi|312898012|ref|ZP_07757421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera micronuciformis F0359]
 gi|310620937|gb|EFQ04488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera micronuciformis F0359]
          Length = 358

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 146/366 (39%), Positives = 200/366 (54%), Gaps = 16/366 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDARRV 79
           + VAMSGGVDSSV A LLK  GY+VIG+TL+L+    A K + +   CC+   V DA+ V
Sbjct: 5   IAVAMSGGVDSSVTAGLLKEQGYEVIGITLRLWEEEPACKVERNIHACCSLDSVNDAKAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HY  D+ + FR+ VI  F  SYA G+TP PC+ CNR +KF  L    +Q GAD
Sbjct: 65  ADVLGIRHYTLDFRDVFRHDVIDYFIDSYAHGKTPNPCIACNRFIKFGLLWDQAQQFGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LATGHY R    V D+ ++   + R  D  +DQSY L+  TQ  L  + FP+ D++K  
Sbjct: 125 LLATGHYAR---IVYDNERKIYTLRRGKDERKDQSYVLYQLTQDLLKHIIFPMADLEKTK 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R+LA+E GL + +K +SQDICF+    Y   +K+    I   G      G+ +G H GI
Sbjct: 182 TRELAKEWGLPVFNKPESQDICFIPDNDYKGFLKKEAPYIFKAGRFTDGQGRTVGTHKGI 241

Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             YTIGQRR       G P +VV LD+ ++ V VG    L    I   ++ W      E 
Sbjct: 242 AAYTIGQRRGLNLGGPGGPYYVVSLDEKNNEVRVGSERELFSAEIKAHDVTWT-----ET 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
              + FK + KIR +    P  V    + + V F+K +    +GQA V Y  D    RVL
Sbjct: 297 VREEPFKAYGKIRYAAQAAPCTVYPAGNEMKVVFDKPQRAATAGQALVLYEDD----RVL 352

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 353 GGGTIT 358


>gi|255002942|ref|ZP_05277906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Puerto Rico]
 gi|255004068|ref|ZP_05278869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Virginia]
          Length = 379

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 180/384 (46%), Positives = 245/384 (63%), Gaps = 15/384 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   +  L+ L   K P++  VVVAMSGGVDSSVVAALL   GY VIG T+QL++S  A
Sbjct: 1   MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           S  K SCC   D+YDA+RV  T+   HYV DYEE FR  VI  F +SY  GETP+PCV C
Sbjct: 61  SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF D+L   R +G DV+ATGHY+R     G+       + R  D ++DQSYFLF+ 
Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGEQ-----QILRGKDPQKDQSYFLFSV 174

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T +QL  LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV +  Y +V++ ++    
Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IVH++G++LG H+GI N+T+GQRRGL ++   PL+VV LD   + V+VGP+ +L  
Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359
             ++++ +NWL D    +    G     ++RSS   V   +  + DG   V  E+  V V
Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCV-V 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           + GQACV Y  +    R+LGGG I
Sbjct: 351 SPGQACVLYDKE----RLLGGGWI 370


>gi|307243659|ref|ZP_07525800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492969|gb|EFM64981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 350

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 214/365 (58%), Gaps = 17/365 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++ MSGGVDSSV A LL+++GY+V+G T+ L++ +  +K          + DAR VC
Sbjct: 2   KRVLLGMSGGVDSSVAAFLLQKEGYEVVGATMALWDFKDGNKDTS-------IEDARVVC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + H+V D+ E F++ V+  F   Y AG+TP PCV CN+T+KF  L    R+LG D 
Sbjct: 55  NKLKIDHHVLDFREDFKDLVVDNFIDEYFAGKTPNPCVFCNKTIKFGLLFDKARELGCDY 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY    L   ++   +  + +     +DQ+Y L+   Q++L    FP+G   K+++
Sbjct: 115 VATGHYA---LVDFNEKSGKYEIKKASSDSKDQTYVLYNLNQEKLARTLFPIGKYDKDTI 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           RD+A+E+GL++ +K DSQDICF+    Y   +K  +      G+ V  +G++LGRH GII
Sbjct: 172 RDMAKEIGLEVHNKPDSQDICFIPDHDYEAFLKENSKKKVEVGNFVDRSGKVLGRHKGII 231

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GLG+  G+P +VV ++     +++G  + L    +  R++N++     +D V
Sbjct: 232 SYTIGQRKGLGITFGKPTYVVAINGQDKSIVLGDNDDLFKTSLTARDVNFV--EWSQDEV 289

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V     + K+R +  P    V       V VDF + +  + SGQ+ VFY+ D    R+LG
Sbjct: 290 VGPIDVYAKVRYAAKPAQAKVTYIGKYRVRVDFVEPQRAITSGQSVVFYSED----RLLG 345

Query: 380 GGIIS 384
           GGII 
Sbjct: 346 GGIIE 350


>gi|118444647|ref|YP_878354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium novyi NT]
 gi|205813888|sp|A0Q152|MNMA_CLONN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118135103|gb|ABK62147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium novyi NT]
          Length = 350

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 202/367 (55%), Gaps = 27/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V V +SGGVDSSV A LLK  GYD+IG+T+++             C      DA++V 
Sbjct: 6   KKVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVS------------CDLDVSEDAKKVA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + +YV D  E F+N VI  FA  Y  G TP PC  CN+ +KF  L+   ++LGAD 
Sbjct: 54  DKLGIPYYVIDLTEEFKNKVIDNFAEEYLQGRTPNPCAVCNKHIKFGALIQKAKELGADY 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++   R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K+ +
Sbjct: 114 IATGHYARI-----EEHNGRFLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKDQI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259
           R++A+++GL++ +K +S DICF+    +   +K +        G+ V  +G+ILG H G+
Sbjct: 169 REIAKKIGLEVHNKKESMDICFIPDNDHGKYIKGLECRDRIKPGNFVDKDGKILGTHKGL 228

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YTIGQR+GLG+++G+P FV+ ++   + V++G  E +    +  +E+N++      D+
Sbjct: 229 IYYTIGQRKGLGLSLGKPGFVIDINPERNEVVIGDEEEIFNEGLIAKEVNFI----PFDS 284

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S       +   DDG + V F+  +  +  GQ  VFY  D     ++
Sbjct: 285 LENPMEVEAKIRYSTTKSKATIIPYDDGKIKVMFKDKQRAITKGQRVVFYIQD----MLV 340

Query: 379 GGGIISG 385
           GGG I  
Sbjct: 341 GGGTIES 347


>gi|301167152|emb|CBW26731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteriovorax marinus SJ]
          Length = 382

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 201/379 (53%), Gaps = 18/379 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ ++  V+V MSGGVDSSV AA+LK  GY+VIG+ ++ +  +  +   G C + ++  D
Sbjct: 11  KSNEETTVIVGMSGGVDSSVCAAVLKEQGYNVIGMFMKNWEEQDEN---GVCQSSKEYAD 67

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              VC+ +++ +Y  D+ + +R+ V   F   Y AG TP P + CNR +KF   L+   +
Sbjct: 68  VISVCEKLDIPYYSVDFVKEYRDNVFQHFLDEYEAGFTPNPDILCNREIKFKVFLNKALE 127

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LGAD LATGHY ++ L  G++      + +  D  +DQ+YFL+   +++L  + FP+G +
Sbjct: 128 LGADYLATGHYCQNILIDGEN-----HLVKGNDPGKDQTYFLYTMKKEKLEHVHFPIGHL 182

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR LA +  L    K DS  ICF+ +  + + +          G    L+G+ +G 
Sbjct: 183 PKTEVRKLAEKFDLSTKHKKDSTGICFIGERNFKNFLSNYIQ--IKPGKFETLSGEEVGE 240

Query: 256 HNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311
           H+G   YTIGQR+       G P FVV  D   + VIV       +L    ++  EI+W+
Sbjct: 241 HSGSAYYTIGQRKGLGLGGPGAPWFVVGKDTKRNVVIVERGEDHPALFFDELWADEISWV 300

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370
                 +      KC  KIR  Q+     + + +DG ++V F++++  VA  Q+ VFYT 
Sbjct: 301 SGEFKGELP---LKCKAKIRYRQEDQDCTITKIEDGELHVQFDQAQRAVALRQSIVFYTQ 357

Query: 371 DSNEARVLGGGIISGSKRS 389
               A  LGG +IS + +S
Sbjct: 358 VQGHAVCLGGAMISRAGKS 376


>gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas albilineans GPE PC73]
 gi|283473444|emb|CBA15949.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Xanthomonas albilineans]
          Length = 397

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 176/388 (45%), Gaps = 37/388 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------------C 67
            R++V +SGGVDSSV A  L + G+ V G+ +Q +          S             C
Sbjct: 4   TRIMVGVSGGVDSSVAAWQLVQQGHTVSGLFMQNWADDGNGDVHDSASIAEDRKPKATTC 63

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A  D  DA  VC  + +  +  D+ + +   V   F + YAAG TP P V CNR VKF 
Sbjct: 64  RAEADRRDAVAVCGMLGIPFHFRDFSKEYWQGVFAHFLAEYAAGRTPNPDVLCNREVKFK 123

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L   R LGA+ +ATGHY R          RR  + R +D  +DQSYFL    Q QL  
Sbjct: 124 HFLDAARDLGAERIATGHYARVAFV-----DRRWRLLRGLDRNKDQSYFLHQLGQAQLAA 178

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
             FP+G++ KE VR +AR+ GL    K DS  ICF+ +  +   + R     A  G+I  
Sbjct: 179 TLFPVGELPKEQVRRIARQAGLPTHAKKDSTGICFIGERDFRTFLSRYLP--ARRGEIRD 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLE 299
            + QI+  H G+  +T+GQR GL +         P +V+  D   + + V        L 
Sbjct: 237 PHEQIVAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVIGKDVARNVLYVDQDRDSPHLM 296

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358
             ++     +W+            F C  + R  Q   P  V+  DDG + V F + +  
Sbjct: 297 ATQLRSESAHWIAGA----PPARHFACRAQTRYRQADEPCMVEIRDDGTLTVQFTRPQRA 352

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGS 386
           V  GQ+ V Y  +      LGG +I+ +
Sbjct: 353 VTPGQSLVLYQGE----ECLGGAVIATT 376


>gi|330813834|ref|YP_004358073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486929|gb|AEA81334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 379

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/384 (47%), Positives = 248/384 (64%), Gaps = 13/384 (3%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +    +NSL   K P++ +VVVAMSGGVDSS VA LLK   Y VIG+TLQLY+  K  K 
Sbjct: 7   TNTNSINSLGFAKAPEETKVVVAMSGGVDSSTVAGLLKEQNYHVIGITLQLYDYGKIGKT 66

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
            G+CCAG+D+YDA+RV + +N+ H+VF+YE  F+  VI  FA SY  GETP+PCV CN+T
Sbjct: 67  SGTCCAGKDIYDAKRVSEQLNIEHHVFNYESLFKEEVIEKFADSYLKGETPIPCVSCNQT 126

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VKF DL    ++LGAD L TGHY++    +      +  M +P+D  RDQSYFLF+TTQ+
Sbjct: 127 VKFRDLFKSAKKLGADALVTGHYVKRLGNL-----NQSKMYQPVDANRDQSYFLFSTTQE 181

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL  LRFPL D+ K+  RDLA++M L +ADK DSQDICFV  G Y  V++++       G
Sbjct: 182 QLDYLRFPLADLPKQETRDLAKKMNLSVADKPDSQDICFVPNGNYKSVIEKLRPESYDPG 241

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +IV L G++LGRHNGIIN+TIGQR+G+      E +FV+ ++  +  VIVG R+ L + +
Sbjct: 242 NIVDLEGKVLGRHNGIINFTIGQRKGIKVGGQEEAIFVIKINPETKDVIVGSRQDLNITK 301

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           I ++EIN+L D    +        F+K+RS+   +P  V  +D    V  +  E GV+ G
Sbjct: 302 IQVKEINFLCDPKELEG-----NFFIKVRSTGRLLPCRV--SDSATSVTLQAGESGVSPG 354

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           QACVFY  D    RV GGG I  +
Sbjct: 355 QACVFYRKDDKGMRVYGGGWIVST 378


>gi|21242742|ref|NP_642324.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|24638307|sp|Q8PL08|MNMA_XANAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21108220|gb|AAM36860.1| tRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 378

 Score =  439 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSDVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  ++ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q      V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDESCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368


>gi|189426122|ref|YP_001953299.1| tRNA-specific 2-thiouridylase MnmA [Geobacter lovleyi SZ]
 gi|226704771|sp|B3E966|MNMA_GEOLS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189422381|gb|ACD96779.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter lovleyi SZ]
          Length = 354

 Score =  439 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 216/372 (58%), Gaps = 23/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ VAMSGGVDSSVVAALL++ G++VIG+T+QL+          S   G   +D  +V  
Sbjct: 3   RIAVAMSGGVDSSVVAALLQQQGHEVIGITMQLF-------EPCSSGPGTPAHDGAQVAA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H++   E +FR+ +I  F   Y  G+TP PC+ CNR +KF  LL   R+LGA++L
Sbjct: 56  QLGIPHHLLRLEPQFRDLIIDNFIDQYRQGQTPNPCILCNRLIKFGLLLEQARELGAELL 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESV 200
           ATGHY+R    VG DG     +    +  +DQSYFL++ +QQQL  + FPLG++  K+ V
Sbjct: 116 ATGHYVRRT--VGPDG--LCHLRTAANQAKDQSYFLYSLSQQQLRQVIFPLGEIASKDEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA   GL +A K DSQ++CF+    Y   +++     A  G+IVH+ GQ+LGRH+G  
Sbjct: 172 RSLATGFGLAVATKGDSQEVCFIPNDDYAAFLEQQG-IKASPGNIVHIGGQVLGRHSGTH 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+   EPL+V+ +D + + ++VG ++ L    +   +I+W+         
Sbjct: 231 RYTIGQRKGLGIGWSEPLYVLEIDSSRNLIVVGEQQHLLKAGLIGADISWI-----IPPP 285

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F    KIR    PVP  V+   DD   V F++++  V  GQ  VFY  D    +VLG
Sbjct: 286 ATSFNTTCKIRYRHQPVPCRVELLADDQCRVLFDEAQRSVTPGQFVVFYQDD----QVLG 341

Query: 380 GGIISGSKRSDA 391
           GG I  +  ++ 
Sbjct: 342 GGRIQAACTAEQ 353


>gi|317133301|ref|YP_004092615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471280|gb|ADU27884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ethanoligenens harbinense YUAN-3]
          Length = 363

 Score =  439 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 15/367 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              V+ AMSGGVDSSV AALLK  G  VIG+TL ++   +    + SCC+  DV DAR V
Sbjct: 9   GKTVLAAMSGGVDSSVTAALLKEQGASVIGITLNVWPEEENPCAR-SCCSVTDVDDARAV 67

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + + HYV + +  F+  VI  FA+ Y  G TP PC+ CN  VKF+ +L    +  AD
Sbjct: 68  CNVLGIPHYVLNTQADFKRGVIDYFAAEYLRGRTPNPCIACNARVKFTAMLRKADEFQAD 127

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R     G        + R  D  +DQ+Y L+  TQ QL  + FP G  +K  
Sbjct: 128 FIATGHYARILRDAG-----GCRLVRAADARKDQTYVLYMLTQTQLGRILFPCGGYEKPQ 182

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R LA+  GL    K+DSQD+CF+ +G Y   ++   AG+   G+IV  +GQ+LGRH+G+
Sbjct: 183 IRALAKAFGLPTFQKTDSQDLCFIGRGGYTGFLRENCAGLLRPGNIVDESGQVLGRHDGV 242

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             +TIGQ +GLG    + L+V+ +D   + V VG   +L      +   +     +   A
Sbjct: 243 YRFTIGQHKGLGAFSEKKLYVLSIDAARAEVRVGENAALFAAGALVGGTH----RILPGA 298

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + DG +   KIR +   VP  +   ++G + + F++ +  V  GQA VFY  D+    VL
Sbjct: 299 LEDGARVQAKIRYNAPAVPATLHTVENGALRLLFDEPQRAVTPGQAAVFYDGDT----VL 354

Query: 379 GGGIISG 385
           GGG I  
Sbjct: 355 GGGTIER 361


>gi|78047602|ref|YP_363777.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123585152|sp|Q3BTY6|MNMA_XANC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78036032|emb|CAJ23723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 378

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 183/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+V+ +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVLGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + N V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWNGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  ++ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368


>gi|262165401|ref|ZP_06033138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM223]
 gi|262025117|gb|EEY43785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM223]
          Length = 335

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 103/346 (29%), Positives = 171/346 (49%), Gaps = 26/346 (7%)

Query: 49  GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108
           G+ ++ +      +    C A +D+ DA+ VCD + +  +  ++   + + V   F + Y
Sbjct: 3   GLFMKNWEEDDNEE---YCTAAEDLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEY 59

Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPM 167
            AG TP P + CN+ +KF   L    + L AD +A GHY+R           +  M R +
Sbjct: 60  KAGRTPNPDILCNKEIKFKAFLEFADEVLDADYIAMGHYVRRTF---PQNGEKPQMLRGL 116

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           D  +DQSYFL+  + +Q+    FP+GD++K  VR +A E GL  A K DS  ICF+ + K
Sbjct: 117 DNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERK 176

Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVY 282
           + D + R     A  G I    G+++G H G++ +T+GQR+GL +        +P +V  
Sbjct: 177 FTDFLSRYLP--AQPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESNEQPWYVAD 234

Query: 283 LDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            D   + +I         L+ H +   +++W+        + +  +C VK R  Q  +  
Sbjct: 235 KDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVD----RTPITEPLRCSVKTRYRQSDIAC 290

Query: 340 F-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             +  +DD + V F++ +V V  GQ+ VFY  +      LGGGII 
Sbjct: 291 TIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQGEI----CLGGGIIE 332


>gi|257458053|ref|ZP_05623212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema vincentii ATCC 35580]
 gi|257444766|gb|EEV19850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema vincentii ATCC 35580]
          Length = 358

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 138/366 (37%), Positives = 199/366 (54%), Gaps = 17/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDS+VVA LL   G++V GVTL++ N +    ++ S    + + +A +  
Sbjct: 1   MKIAVGLSGGVDSTVVAKLLMEQGHEVCGVTLRVLNEKNPVAKEQS---ERIIGEAAQAA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H V+D+   F+  +I  F  SY  GETP PC  CN+ +KF  LL    Q G D 
Sbjct: 58  RILGIPHRVYDFRAEFQTHIIDYFIQSYCNGETPNPCYICNKQIKFGLLLERALQEGCDA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    V  +   R ++ R +D ++DQSYFL   +Q+QL    FPL ++ K  V
Sbjct: 118 VATGHYAK----VFQESSGRYVLERGVDAQKDQSYFLALLSQEQLSRTLFPLAELTKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A KSDSQDICFV  G Y  V++        +GD + +NG  +G H G+ 
Sbjct: 174 RLIAEKAGLVNAHKSDSQDICFVPDGDYTAVIEAFAPDAFPQGDFIDMNGIKVGTHRGLH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL +  G P++VV      + V V P   L     ++R++NW+      +  
Sbjct: 234 RYTIGQRRGLALPFGYPIYVVEKSAEHNTVTVAPENGLFAAACFVRDVNWIA-----EIP 288

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            + F   VK R  Q      ++   D+ V + F + E  VA GQA VFY      +RVLG
Sbjct: 289 NEPFYAEVKTRYRQQLKKARIEPIGDNRVRIVFTEPERAVARGQAAVFYRG----SRVLG 344

Query: 380 GGIISG 385
           GGII  
Sbjct: 345 GGIIDS 350


>gi|103487513|ref|YP_617074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingopyxis alaskensis RB2256]
 gi|123379667|sp|Q1GRI1|MNMA_SPHAL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|98977590|gb|ABF53741.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingopyxis alaskensis RB2256]
          Length = 382

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/380 (50%), Positives = 248/380 (65%), Gaps = 18/380 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             L    KD R+VVAMSGGVDSSVVAAL  R G +VIGVTLQLY+    +KR G+CCAGQ
Sbjct: 20  FQLAGPMKDRRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAKAKRVGACCAGQ 79

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D +   H+V D+E RFR+ VI  FA  Y AG TP+PCV CN  VKF+DL  
Sbjct: 80  DIRDARAVADRLGFVHHVHDHESRFRDTVIDQFADEYLAGRTPIPCVRCNMGVKFTDLFQ 139

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY+R    +G DG     M R +D  RDQSYFLFATTQ+QL  LRFP
Sbjct: 140 LARELGADCLATGHYVRR--VMGPDGAE---MHRAVDPARDQSYFLFATTQEQLDFLRFP 194

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG ++K  VR++AR++GL +A K DSQDICFV  G Y  +V+++      +GDIVH++G 
Sbjct: 195 LGGLEKNVVREIARDLGLGVAGKPDSQDICFVPDGDYASLVRKLRPEAEDQGDIVHVDGT 254

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +LG H G+I+YT+GQRRG+ +    EPL+VV L+  + +VIVGPR +L V    L + NW
Sbjct: 255 VLGAHKGLIHYTVGQRRGIDIGGQAEPLYVVRLNAATKQVIVGPRRALAVSGARLGDANW 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           L D       V+G     K+RS   PVP  V  N     + F   E GVA GQA V Y +
Sbjct: 315 LAD-------VEGRDVLAKVRSMAKPVPARVTAN----RLRFLSPEYGVAPGQAAVLYDA 363

Query: 371 DSNEARVLGGGIISGSKRSD 390
            ++++RVLGGG I  +  ++
Sbjct: 364 -ADKSRVLGGGWIEETFTAE 382


>gi|114794425|pdb|2HMA|A Chain A, The Crystal Structure Of Trna (5-Methylaminomethyl-2-
           Thiouridylate)-Methyltransferase Trmu From Streptococcus
           Pneumoniae
          Length = 376

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 175/369 (47%), Gaps = 25/369 (6%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
            A LLK  GYDVIG+  + ++    +   G C A +D  D   V D I + +Y  ++E+ 
Sbjct: 25  TALLLKEQGYDVIGIFXKNWDD---TDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKE 81

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           + + V   F + Y AG TP P V CN+ +KF   L     LGAD +ATGHY R    V  
Sbjct: 82  YWDRVFEYFLAEYRAGRTPNPDVXCNKEIKFKAFLDYAITLGADYVATGHYAR----VAR 137

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           D        R +D  +DQ+YFL   +Q+QL    FPLG ++K  VR LA E GL  A K 
Sbjct: 138 DEDGTVHXLRGVDNGKDQTYFLSQLSQEQLQKTXFPLGHLEKPEVRRLAEEAGLSTAKKK 197

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM- 274
           DS  ICF+ +  + + +       A  G    ++G+  G H G+  YTIGQR GLG+   
Sbjct: 198 DSTGICFIGEKNFKNFLSNYLP--AQPGRXXTVDGRDXGEHAGLXYYTIGQRGGLGIGGQ 255

Query: 275 ----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327
                 P FVV  D + + + VG     +SL    +   ++++  +   E       +C 
Sbjct: 256 HGGDNAPWFVVGKDLSKNILYVGQGFYHDSLXSTSLEASQVHFTREXPEE----FTLECT 311

Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
            K R  Q    V V    +   V F + +  +  GQA VFY  +      LGGG+I  + 
Sbjct: 312 AKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGE----ECLGGGLIDNAY 367

Query: 388 RSDAVEESL 396
           R   V + +
Sbjct: 368 RDGQVCQYI 376


>gi|289666030|ref|ZP_06487611.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 378

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RTAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVKVHFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368


>gi|254994811|ref|ZP_05277001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Mississippi]
          Length = 379

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 180/384 (46%), Positives = 245/384 (63%), Gaps = 15/384 (3%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           MV   +  L+ L   K P++  VVVAMSGGVDSSVVAALL   GY VIG T+QL++S  A
Sbjct: 1   MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           S  K SCC   D+YDA+RV  T+   HYV DYEE FR  VI  F +SY  GETP+PCV C
Sbjct: 61  SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF D+L   R +G DV+ATGHY+R     G+       + R  D ++DQSYFLF+ 
Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGEQ-----QILRGKDPQKDQSYFLFSV 174

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T +QL  LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV +  Y +V++ ++    
Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IVH++G++LG H+GI N+T+GQRRGL ++   PL+VV LD   + V+VGP+ +L  
Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNAVVVGPQSALMK 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359
             ++++ +NWL D    +    G     ++RSS   V   +  + DG   V  E+  V V
Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCV-V 350

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           + GQACV Y  +    R+LGGG I
Sbjct: 351 SPGQACVLYDKE----RLLGGGWI 370


>gi|325107944|ref|YP_004269012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968212|gb|ADY58990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces brasiliensis DSM 5305]
          Length = 370

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/382 (37%), Positives = 202/382 (52%), Gaps = 31/382 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--------YNSRKA------SKRKGSC 67
           RVV+AMSGGVDSS  A LL+  GY+VIG+ ++          +   A         K  C
Sbjct: 4   RVVLAMSGGVDSSAAAHLLQEQGYEVIGLFMRSGVNEETCSLDDPNALPVINLKAHKQGC 63

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C+  D  DARRV D +++  +  ++++ F   +   FA  Y AG TP PCV CN  +KF 
Sbjct: 64  CSASDAADARRVADELDIPFHALNFQDAF-GRIKDYFADEYLAGRTPNPCVQCNNWLKFG 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L    +Q+GA  +A+GHY R     G+       + R +D  +DQSY LF      L  
Sbjct: 123 KLWEFAQQVGATKIASGHYARITEQDGE-----YHLERGLDPGKDQSYVLFGIRPDLLPH 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FP+G  +K  +R++A E GL  ADK DSQ+ICF+    Y   V+R       +G  V+
Sbjct: 178 ILFPVGGFQKGEIREMAGEAGLRTADKKDSQEICFIPDNDYAGFVRRYRGEQETKGQFVN 237

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             G+ LG H G  ++TIGQRRGLG+A G P FV+ +   +  V++G  + L    +    
Sbjct: 238 TAGESLGEHRGYEHFTIGQRRGLGMAFGTPHFVLEIRPETCEVVLGSYDELGRTGLRADR 297

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           +NWL +      V D F+C  +IR    P    V+R D D V V F++ + GVA GQA V
Sbjct: 298 MNWLAN------VGDEFRCTAQIRYQHRPAACTVRRLDNDQVEVHFDEPQHGVAPGQAFV 351

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y  D    RVLGGG I+ S +
Sbjct: 352 CYDGD----RVLGGGWITESFQ 369


>gi|71083529|ref|YP_266248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762051|ref|ZP_01264016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|123646720|sp|Q4FME4|MNMA_PELUB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71062642|gb|AAZ21645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717853|gb|EAS84503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 371

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/379 (46%), Positives = 251/379 (66%), Gaps = 9/379 (2%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T+LNS+ + K+PKD  V+VAMSGGVDSS VAA++K +GY+VIG+TL+LYN  K +     
Sbjct: 2   TKLNSIGIAKDPKDTLVIVAMSGGVDSSTVAAMMKNEGYNVIGITLKLYNDSKETASSKQ 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CCAGQD+ DA+RV D + + H +  Y+ +F+  VI  F  SY  GETP+PCV CN+TVKF
Sbjct: 62  CCAGQDIMDAKRVADKLKIEHKILYYQNKFKEGVIDNFIDSYLNGETPIPCVQCNKTVKF 121

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +DL    ++L AD L TGHY++S     +       M R +DL RDQSYFLF TT+ QL 
Sbjct: 122 TDLFEEAKRLNADALVTGHYVKSITEKDN-----TDMYRGIDLNRDQSYFLFNTTKDQLN 176

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG++ K+  R++ARE+ L++ADK DSQDICFV  G Y  V+++       +G+I 
Sbjct: 177 FLRFPLGNLLKDETRNIARELDLNVADKPDSQDICFVPNGDYASVIEKFRPNSFSKGNIK 236

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++NG+++G H+GIINYTIGQR+G+GV+   PL+VV +  + + +IVG +E L   +I L+
Sbjct: 237 NMNGEVIGVHDGIINYTIGQRKGIGVSDKNPLYVVKIIADKNEIIVGAKEHLVKTKINLK 296

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           ++N + +    D      + FVK+RS+   +   +  ND    V+  + E G+A GQACV
Sbjct: 297 DLNIITN----DQNDFKNELFVKVRSTGRLIKAKIDINDTNANVNLLEEEHGIAPGQACV 352

Query: 367 FYTSDSNEARVLGGGIISG 385
           FY  ++N  +VLGGG I  
Sbjct: 353 FYAKNNNGYKVLGGGWIKS 371


>gi|325915390|ref|ZP_08177707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538437|gb|EGD10116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 378

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 130/393 (33%), Positives = 186/393 (47%), Gaps = 33/393 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAYRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATVFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIADHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSQWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEFP 405
                LGG +I+ +   DA  E  L+  G  FP
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA--GSSFP 373


>gi|27904738|ref|NP_777864.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29428172|sp|P59460|MNMA_BUCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27904135|gb|AAO26969.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 370

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 26/376 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+VAMSGGVDSSV A +LK+ GY V G+ ++ +     S     C + +D+ DA+ V
Sbjct: 5   NKKVIVAMSGGVDSSVTAWILKKKGYHVEGLFMKNWEEH-NSDSDMHCSSKKDLSDAQGV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138
           C+ +N+  +  ++   +   V   F   Y  G TP P V CN+ +KF      + + L A
Sbjct: 64  CNQLNIFLHKVNFSFEYWENVFQKFLFEYKMGRTPNPDVLCNKEIKFKIFFEYSIQDLQA 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY++ R++     K +  + R +D  +DQSYFL+   Q+ L    FP+G + K 
Sbjct: 124 HYIATGHYVQKRIF-----KNKYFLLRGLDATKDQSYFLYTINQKVLKQCLFPIGHLTKC 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +AR + L +A K DS  ICF+        +          G+I+   GQ +G+H G
Sbjct: 179 EVRKIARRINLIVAKKKDSTGICFISPQNIKKFLNHYLPH--KSGNIITTLGQKIGQHYG 236

Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINW 310
           +I+YTIGQRRGLG+   +     P +VV  D  ++ +IV    +   L    +   E++W
Sbjct: 237 LIHYTIGQRRGLGIGGIKGFNNIPWYVVSKDITNNSLIVSQGMNNFYLMSIGLIANELHW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           + D      + + F C  KIR     +P  +  +    + V FE+ E  VA GQ+ VFY 
Sbjct: 297 INDI----NIQNSFFCTAKIRYRHIDIPCKIVMHKKKQIKVLFERPESSVAPGQSVVFYL 352

Query: 370 SDSNEARVLGGGIISG 385
           SD      LGGGII  
Sbjct: 353 SD----LCLGGGIIKK 364


>gi|172038551|ref|YP_001805052.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. ATCC 51142]
 gi|171700005|gb|ACB52986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. ATCC 51142]
          Length = 367

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/373 (40%), Positives = 204/373 (54%), Gaps = 23/373 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             K     +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+   V
Sbjct: 7   FKKRLTMKKVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCSEGMV 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + V H++ D  E F   +I    S Y +G TPLPC  CNR VKF  +L+  
Sbjct: 61  -DAAFICEQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYA 119

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++ L  D +ATGHY R R    D+  RR  + R +D  +DQSYFL+  +Q  L    FPL
Sbjct: 120 KEELNCDRIATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G+  KE  R +A E  L  A K +SQD+C ++  G     + +       EG+IV L+G+
Sbjct: 177 GEQTKEETRRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIK--PKEGEIVDLDGK 234

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H GI +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R +       +  +NW+
Sbjct: 235 VLGTHQGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWV 294

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                   +       V++R     VPV  +   ++ V + F + + G+  GQA VFY  
Sbjct: 295 SIAEPSSPIT----VEVQVRYRSKAVPVSIIPIENNRVTLQFNEPQFGITPGQAAVFYDG 350

Query: 371 DSNEARVLGGGII 383
           +     VLGGGII
Sbjct: 351 EI----VLGGGII 359


>gi|146297250|ref|YP_001181021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205814264|sp|A4XLP5|MNMA_CALS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145410826|gb|ABP67830.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 361

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 201/370 (54%), Gaps = 15/370 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77
             +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ +    +     SCC+   V DAR
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQNECGEELITGKSCCSIYAVDDAR 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + +++ +YVF+ ++ FR  VI  F   Y  G TP PC+ CNR +KF   L     +G
Sbjct: 62  KVANILDIPYYVFNMKDDFRKIVIDYFIDEYIKGRTPNPCIMCNRKIKFELFLKKAIAIG 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY    +   D    R ++ R    E+DQ+Y L+  TQ+ L    FPLG   K
Sbjct: 122 MDYIATGHYA---IIEYDSSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR LA +  L +A K DSQ+ICF+    Y   +++   GI  +G  V   G ILG+  
Sbjct: 179 DEVRKLAEKFKLPVAKKPDSQEICFIPDNNYGKFIEKET-GIREDGVYVDTEGNILGKSK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              NYTIGQR+GLG++ G+ ++VV +    ++V++G    +    +   ++N++      
Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVAIKPEENKVVLGEEGKIFADALIATDLNFI----PF 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +    +   KIR +        V   ++ V V F + +  +  GQ+ VFY +D     
Sbjct: 294 DKLESEIEVTAKIRYTAKEAKAKIVPMENNKVLVKFYEKQRAITPGQSVVFYNNDI---- 349

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 350 VVGGGIIEKA 359


>gi|291459813|ref|ZP_06599203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417603|gb|EFE91322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 363

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 147/369 (39%), Positives = 201/369 (54%), Gaps = 12/369 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARR 78
             + +VAMSGGVDSSV AAL+K  GYD IGVT++LY      + R GSCC  +D  DAR+
Sbjct: 2   GKKALVAMSGGVDSSVAAALMKERGYDCIGVTMKLYEKEGGGTCRVGSCCTAEDAEDARQ 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + + +YVF++   F   VI  FA +Y  G TP PC+DCNR +K   L    R+LG 
Sbjct: 62  AASVLGIPYYVFNFTGDFEREVIRRFAETYLKGGTPNPCIDCNRYMKHRRLYQRARELGF 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D +ATGHY R      D G+ R ++ +  +  +DQSY L+  +Q+QL    FPLGD   K
Sbjct: 122 DSIATGHYARVSF---DAGRGRWLLKKARNAAKDQSYVLYFLSQEQLSHSVFPLGDFETK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR+LA ++    A K DSQDICFV +G Y D ++         G+ V   G+ILGRH 
Sbjct: 179 EEVRELAEKLHFLNARKRDSQDICFVTEGDYGDFLESYLGRSFPPGNFVDEEGRILGRHR 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI+ YTIGQR+GLG+++  P++V   D   + V +   E L    +   + NW+     E
Sbjct: 239 GIVRYTIGQRKGLGLSLEAPMYVYEKDLLKNEVYLTRGEKLYQKELIADDFNWILYDPSE 298

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +        K R     VP   +   DG V V F++ E   A GQA V Y  ++    
Sbjct: 299 --IKGAIPVTAKSRYRAKEVPAEAELLPDGRVRVRFQEPERAPAIGQAIVLYEGEN---- 352

Query: 377 VLGGGIISG 385
           V+GGG I  
Sbjct: 353 VVGGGTIQS 361


>gi|110005181|emb|CAK99508.1| probable trna 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Spiroplasma citri]
          Length = 377

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 190/381 (49%), Gaps = 28/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            +VVV +SGGVDSSV   LL++ GYDV G+ ++ ++S+  +   G+       C    D 
Sbjct: 2   KKVVVGLSGGVDSSVSLYLLQQAGYDVEGLFMRNWDSQLNNDILGNKAINNMICPQELDY 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V  T+ V  +  D+ + +   V   F S Y  G TP P + CN+ +KF+  L+  
Sbjct: 62  NDAVNVSKTLQVPLHRADFIKEYWEYVFKHFISEYQKGRTPNPDILCNKYIKFNYFLNYA 121

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                AD +A GHY R R    ++  +   + R +D ++DQ+YFL    Q QL    FPL
Sbjct: 122 INNYHADFIAMGHYARVRF---NEELQEYQLLRGIDRDKDQTYFLSQLNQGQLSKTFFPL 178

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
           G++ K+ VR++A    L  A+K DS  ICF+ +  +   ++        +G+IV +   +
Sbjct: 179 GNLTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKIFLQNYIPN--QDGNIVDIETKE 236

Query: 252 ILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307
           ++G HNG++ YTIGQRRGL    M EP FV   +   + + V      + L      + +
Sbjct: 237 VVGHHNGVMYYTIGQRRGLNLGGMSEPYFVAGKNVEKNILYVAKSSEEKWLYSTSCLVTD 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           +NW+     ++     F C  K R  Q  +PV +   ND+   V F  +   +  GQA V
Sbjct: 297 VNWINTFREKE-----FNCTAKFRYRQKDIPVKITVLNDNKCLVQFATTVKAITPGQASV 351

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY  +      LGGG+I+   
Sbjct: 352 FYVDEV----CLGGGVINDVY 368


>gi|325927859|ref|ZP_08189083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas perforans 91-118]
 gi|325541699|gb|EGD13217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas perforans 91-118]
          Length = 378

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSALR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  ++ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y    
Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDG-- 347

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 348 --QECLGGAVIAAT---DAPLERQLA 368


>gi|296535629|ref|ZP_06897808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264053|gb|EFH10499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseomonas cervicalis ATCC 49957]
          Length = 368

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/379 (49%), Positives = 238/379 (62%), Gaps = 21/379 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+VVAMSGGVDSSVVA LLK  G++VIG TLQLY+   A ++KG+CCAGQD++DAR V 
Sbjct: 1   MRIVVAMSGGVDSSVVAGLLKEQGHEVIGATLQLYDHGAAIEKKGACCAGQDIHDARDVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D E RFR+AVI  FA +YA GETP+PCV CN+TVKF DL+ + R LGAD 
Sbjct: 61  DRLGIPHYVLDRERRFRDAVIEDFAEAYARGETPIPCVRCNQTVKFQDLVELARDLGADA 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           LATGHY+R       +G+    + R  D  RDQSYFLFATT+ QL   RFPLGD   K  
Sbjct: 121 LATGHYVRR-----TEGEAGAELRRAADPARDQSYFLFATTRAQLEFCRFPLGDYTSKAE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +A+K DSQDICFV QGKY D+V ++      EG I H++G++LG H G+
Sbjct: 176 VRAEALRLGLAVAEKPDSQDICFVPQGKYADLVAKLRPEAVAEGSIEHVDGRVLGTHKGV 235

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             YT+GQ RGLG+A     EPL+V  LD    RV+V PR +L    + + E+NWL     
Sbjct: 236 ARYTVGQGRGLGMASRDGEEPLYVTALDPARKRVVVAPRGALASPEVLVGEVNWL----- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNE 374
            DA      C VK+R+ + P P       +   + V  E+  +  A GQ CV Y  D   
Sbjct: 291 IDAPAVPLPCQVKLRAREMPQPAIAHWQPESGLLRVVLEQPAIA-APGQGCVLYDGD--- 346

Query: 375 ARVLGGGIISGSKRSDAVE 393
            RVLGGG I  + ++   E
Sbjct: 347 -RVLGGGFIRRATQAIDSE 364


>gi|205814656|sp|B1X0U7|MNMA_CYAA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 355

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 149/366 (40%), Positives = 203/366 (55%), Gaps = 23/366 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+   V DA  +C
Sbjct: 2   KKVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + V H++ D  E F   +I    S Y +G TPLPC  CNR VKF  +L+  ++ L  D
Sbjct: 55  EQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAKEELNCD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    D+  RR  + R +D  +DQSYFL+  +Q  L    FPLG+  KE 
Sbjct: 115 RIATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E  L  A K +SQD+C ++  G     + +       EG+IV L+G++LG H G
Sbjct: 172 TRRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIK--PKEGEIVDLDGKVLGTHQG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R +       +  +NW+       
Sbjct: 230 IHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWVSIAEPSS 289

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +       V++R     VPV  +   ++ V + F + + G+  GQA VFY  +     V
Sbjct: 290 PIT----VEVQVRYRSKAVPVSIIPIENNRVTLQFNEPQFGITPGQAAVFYDGEI----V 341

Query: 378 LGGGII 383
           LGGGII
Sbjct: 342 LGGGII 347


>gi|294625260|ref|ZP_06703899.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600434|gb|EFF44532.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 378

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  LLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  ++ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q      V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368


>gi|148244833|ref|YP_001219527.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166235089|sp|A5CW80|MNMA_VESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146326660|dbj|BAF61803.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 362

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 27/379 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    K+ +++V +SGGVDSSV A LL + GY V  + ++ +      +    C A QD+
Sbjct: 1   MKNLNKNTKIIVGLSGGVDSSVTALLLLKQGYQVEALFMKNWEEDDKGR---YCSAKQDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ + + +++  +  ++   + N V   F   Y  G TP P + CN+ +KF   L   
Sbjct: 58  SDAQNITNKLSIKLHTINFSVDYWNDVFTHFLKEYKKGRTPNPDILCNQKIKFGAFLKHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R     G        +   +D  +DQSYFL   +Q QL    FPLG
Sbjct: 118 ISLGADKIATGHYARIAKKNGT-----YQLKTGLDNNKDQSYFLHLLSQYQLSKSLFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +  K  VR++A E G   A K DS  ICF+ + K+ + +         +G+IV   GQ +
Sbjct: 173 ETNKIDVRNIATENGFVTAKKKDSTGICFIGERKFSEFLATYLPK--QQGNIVGEQGQFI 230

Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLR 306
             H G+  YTIGQR+GL +       G+P FV       + ++V  G    L    +   
Sbjct: 231 KHHQGLAFYTIGQRKGLEIGGGFGKSGKPWFVADKCIERNELVVVQGDHTLLYYQTLNTS 290

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           +  W+              C  KIR  Q      + ++++  + + F++ +  +  GQ+ 
Sbjct: 291 KPYWIN-----TPPTLPMTCNAKIRYRQQSQSCMISQDNNKQLKIIFKQPQRAITPGQSI 345

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY +++     LGG II 
Sbjct: 346 VFYDNET----CLGGAIIE 360


>gi|294666592|ref|ZP_06731831.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603612|gb|EFF47024.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 378

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  ++ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQTHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q      V   DDG V V FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368


>gi|309775351|ref|ZP_07670356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916868|gb|EFP62603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 386

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 190/384 (49%), Gaps = 29/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            +V++ +SGGVDS+V A LLK  GYDV    ++ ++S   +   G+       C   QD 
Sbjct: 3   QKVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D + +     D+ + + + V   F   Y  G TP P + CN+ +KF   ++  
Sbjct: 63  LDAKEVADRLGLPLLRVDFVKEYWDHVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMNYA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LG DVLATGHY +      D   +   M R  D  +DQ+YFL   +Q  L    FP+G
Sbjct: 123 RKLGFDVLATGHYAQV-----DHSGKESRMLRGADSNKDQTYFLCQVSQDALRHSMFPIG 177

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-Q 251
            M+K  VR++A  M L  ++ K DS  ICF+ +  + + +K      + +GDI+ +   +
Sbjct: 178 HMEKHEVREIAERMELNSVSKKKDSTGICFIGERNFKEFLKNYLP--SQDGDIMDIETLE 235

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
            +GRH G++ YTIGQR+GLG+     P FVV  D   + + V      + L      +  
Sbjct: 236 TIGRHGGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLYSDSCIVSG 295

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           +NW  +   +  +V    C  K R  Q    V ++  D+  VYV + +    V +GQ  V
Sbjct: 296 VNWFSENKPQGELV----CTAKFRYRQPDNDVILRFIDNTTVYVRYPQLVSSVTAGQEAV 351

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY ++      LGGG+I    +  
Sbjct: 352 FYQNE----ECLGGGVIEDVFKEG 371


>gi|160896253|ref|YP_001561835.1| tRNA-specific 2-thiouridylase MnmA [Delftia acidovorans SPH-1]
 gi|205816627|sp|A9BS40|MNMA_DELAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160361837|gb|ABX33450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Delftia acidovorans SPH-1]
          Length = 372

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 185/382 (48%), Gaps = 32/382 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA  V
Sbjct: 3   KHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDFVDAAAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +LGA+
Sbjct: 60  ADVVGIEIEHVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R        +   + + +D  +DQSYFL    Q QL    FP+G++KK  
Sbjct: 120 KIATGHYARVRQNPD---TQLFELLKGLDPAKDQSYFLHRLNQAQLSRSMFPVGELKKTE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E+GL  A K DS  ICF+ +  + D + R  +     G+I+    + LG+H G+
Sbjct: 177 VRRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKE--PGNILDDRNRKLGKHVGL 234

Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYL--DKNSSRVIVGP-RESLEVHRIY 304
             YT+GQR GLG+               +P FV     D N+ RV+ G     L    + 
Sbjct: 235 SFYTLGQRSGLGIGGVKEKGAPRGGGDHDPWFVARKELDTNTLRVVQGHDHPWLLSQSLL 294

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
             +++W+       A  +G     K R  Q   P  +     +G  +DF + +  V  GQ
Sbjct: 295 ADQVSWVAGH----APAEGKAYGSKTRYRQPDSPALISGATPEGFRLDFPEPQWAVTPGQ 350

Query: 364 ACVFYTSDSNEARVLGGGIISG 385
           + V Y  D      LGGGII+ 
Sbjct: 351 SAVLYDGDV----CLGGGIIAA 368


>gi|75910268|ref|YP_324564.1| tRNA-specific 2-thiouridylase MnmA [Anabaena variabilis ATCC 29413]
 gi|123608374|sp|Q3M5R7|MNMA_ANAVT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|75703993|gb|ABA23669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anabaena variabilis ATCC 29413]
          Length = 352

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/367 (39%), Positives = 207/367 (56%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+   + DA  +C
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCSEGMI-DAAYIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + + H V D  + F+  ++    + Y AG TPLPC  CN+TVKF  ++   R+ LG D
Sbjct: 55  EQLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYAREQLGCD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+M+K  
Sbjct: 115 RIATGHYARISY---DEASGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKAD 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C V+  G     + +  A    +GDIV   G+ILG+H+G
Sbjct: 172 TRRIATEHGLKTADKPESQDLCLVESNGSMRAFLDKYIA--PKKGDIVDTAGKILGQHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+GLG+A  EPL+VV LD  +++V+VG R         +  +NW+       
Sbjct: 230 VHHYTIGQRKGLGIAAPEPLYVVELDAVNNKVVVGDRTKATQEECTVSRVNWVSI----P 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +  V+IR    P PV V   ++  V + F++ +  +  GQA V+Y  D    +V
Sbjct: 286 EPSTPIRAAVQIRYRSAPEPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGD----KV 341

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 342 LGGGIIE 348


>gi|305667726|ref|YP_003864013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maribacter sp. HTCC2170]
 gi|88709776|gb|EAR02009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maribacter sp. HTCC2170]
          Length = 396

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/401 (29%), Positives = 190/401 (47%), Gaps = 43/401 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ +SGGVDSSV A LLK  GY+VIG+ ++ ++    +  +  C   +D  DA  V 
Sbjct: 2   KKVVIGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISE-ECPWLEDSNDALIVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D    ++  ++    + Y  G TP P V CNR +KF   L +  QLGAD 
Sbjct: 61  EKLGIPFQTVDLSVEYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFLKIALQLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    V D G+    +    D  +DQSYFL   +Q+QL    FP+G++ K  V
Sbjct: 121 VATGHYCRKGTLVNDKGEETFQLLSGKDDNKDQSYFLCQLSQEQLSKTLFPIGNLTKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV---------------------------- 232
           R +A +  L  ADK DSQ +CF+ + +  + +                            
Sbjct: 181 RQIAADNALITADKKDSQGLCFIGKVRLPEFLQQKLKPKKGVIVEVPSTIEEYQHQVPSF 240

Query: 233 ---KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKNSS 288
              +   +  + +   V  +G+I+G H G   +T GQR+GL      EPLFV+  D + +
Sbjct: 241 SNKEEELSFYSQKPKYVITDGKIVGEHQGAHYFTKGQRKGLDVGGTKEPLFVIDTDVDEN 300

Query: 289 RVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
            +  G       L    +++   E++W+   L    V +  +   +IR  Q      + +
Sbjct: 301 VIYTGQGKSHPGLYRRTLFVTNAELHWVRSDLAL-KVDESMEVMARIRYRQALQKATIYK 359

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            D G+YVDFE+ +  +  GQ   +Y  D     ++G G+IS
Sbjct: 360 IDSGLYVDFEEKQSAITEGQFVAWYLDD----ELIGSGVIS 396


>gi|186685498|ref|YP_001868694.1| tRNA-specific 2-thiouridylase MnmA [Nostoc punctiforme PCC 73102]
 gi|205816898|sp|B2J5L9|MNMA_NOSP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|186467950|gb|ACC83751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nostoc punctiforme PCC 73102]
          Length = 351

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 208/367 (56%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+   + DA  +C
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCSEGMI-DAADLC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + V H + D  + F+  ++    + Y+AG TPLPC  CN+TVKF  ++   R+ LG D
Sbjct: 55  EQLGVPHQIVDIRDLFQTHIVDYLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREELGCD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+++K  
Sbjct: 115 RIATGHYARISY---DEATGRYQLLRAIDRNKDQSYFLYDLSQDLLAATIFPLGELEKTD 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C V+  G     + +  A     GDIV   G+ILG+H+G
Sbjct: 172 TRRIATEYGLKTADKPESQDLCLVESNGSMRAFLDKYLA--PKSGDIVDTTGKILGQHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+GLG+A  EPL+V+ LD  +++V+VG R  +      +  +NW+       
Sbjct: 230 VHHYTIGQRKGLGIAAAEPLYVIELDAENNKVVVGDRTKVTQPECTVNRVNWVSIAEPST 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +       V+IR    P PV V   ++  V + F++ +  +  GQA V+Y  +    +V
Sbjct: 290 PI----HAEVQIRYRSTPTPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGE----KV 341

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 342 LGGGIIE 348


>gi|71274784|ref|ZP_00651072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Dixon]
 gi|71901076|ref|ZP_00683185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|170729970|ref|YP_001775403.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M12]
 gi|205828985|sp|B0U6Q7|MNMA_XYLFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71164516|gb|EAO14230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Dixon]
 gi|71729158|gb|EAO31280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|167964763|gb|ACA11773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa M12]
          Length = 379

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K+ +R
Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V        L+   +     +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   +DG + VDF +++  V  GQ+ V Y  + 
Sbjct: 294 S----PPAHTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTRTQWAVTPGQSLVLYDGN- 348

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 349 ---ECLGGAVIATT 359


>gi|160915329|ref|ZP_02077542.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991]
 gi|158433128|gb|EDP11417.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991]
          Length = 387

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 29/381 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V++ +SGGVDS+V A LLK  GYDV    ++ +++   +   G+       C   QD
Sbjct: 3   KQKVLLGLSGGVDSAVAAYLLKEAGYDVTCAFMRNWDAYANNDILGNPTISNEVCPQEQD 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V + + +     D+ + + + V   F S Y  G TP P + CN+ +KF   L+ 
Sbjct: 63  FMDAKAVAEKLELPLLRVDFVKEYWDHVFQYFLSEYEKGRTPNPDILCNKYIKFDAFLNY 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             ++G D++A GHY +      + G +   + R  D  +DQ+YFL    QQ L    FP+
Sbjct: 123 ANKMGFDMVAMGHYAQV-----EHGPKESRLIRGADTNKDQTYFLAQVPQQSLQHALFPI 177

Query: 193 GDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG- 250
           G ++K  VR +A+E+ L  ++ K DS  ICF+ +  +   +       + +GDIV +   
Sbjct: 178 GHLEKHEVRQIAKELHLDSVSAKKDSTGICFIGERNFKAFLSNYLP--SKDGDIVDIESL 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPR---ESLEVHRIYLR 306
           +++GRH G++ YTIGQR+GLG+   + P FVV  D   + + V      + L  +   + 
Sbjct: 236 EVIGRHAGVLYYTIGQRKGLGIGGNKGPWFVVGKDVEKNVLYVTNGNESDWLFTNSCIVS 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
            +NW  +    +   + + C  K R  Q    V ++  +D+ V+V + +    V SGQ  
Sbjct: 296 GVNWFSN----ERPSEDYACTAKFRYRQADNAVVLRFIDDNTVFVRYSQKVAAVTSGQEA 351

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           VFY +++     LGGG+I  +
Sbjct: 352 VFYQNET----CLGGGVIEDA 368


>gi|28198570|ref|NP_778884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Temecula1]
 gi|182681251|ref|YP_001829411.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M23]
 gi|32130276|sp|Q87DM0|MNMA_XYLFT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828984|sp|B2I9X8|MNMA_XYLF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28056654|gb|AAO28533.1| tRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|182631361|gb|ACB92137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa M23]
 gi|307579701|gb|ADN63670.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 379

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K+ +R
Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V        L+   +     +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   +DG + VDF +++  V  GQ+ V Y  + 
Sbjct: 294 S----PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTRTQWAVTPGQSLVLYDGN- 348

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 349 ---ECLGGAVIATT 359


>gi|257066076|ref|YP_003152332.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Anaerococcus prevotii DSM 20548]
 gi|256797956|gb|ACV28611.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Anaerococcus prevotii DSM 20548]
          Length = 372

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/359 (33%), Positives = 185/359 (51%), Gaps = 24/359 (6%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
            A LLK +GYDV+G+ ++ ++    +   G C A  D  DA  VC+ I + +Y  ++E+ 
Sbjct: 22  AALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYEDAVAVCNQIGIPYYSINFEKE 78

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           + + V   F   Y  G TP P + CN+ +KF   L   + LGAD +ATGHY R      D
Sbjct: 79  YYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKSLGADYVATGHYARV-----D 133

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
                 +M R +D  +DQ+YFL   +Q+Q+ D+ FP+G+++K  VR++A +  L  ADK 
Sbjct: 134 RSGDETVMLRGLDSNKDQTYFLSQLSQEQIKDVLFPVGELQKSEVREIAHKYKLATADKK 193

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM- 274
           DS  ICF+ +  + + +       A  GDIV  +G +LG+H+G++ +TIGQRRGLG+   
Sbjct: 194 DSTGICFIGERDFNEFLSNYLP--AQAGDIVDTDGNVLGKHDGLMFHTIGQRRGLGIGGE 251

Query: 275 GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR 331
           GE  FV   D   + +IV        L  +++Y  E +       E  +   F C  K R
Sbjct: 252 GEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFS----TFTEKKIPKEFDCTAKFR 307

Query: 332 SSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
             Q  +   V+  +DG V V ++++   V  GQA VFY  +      +G  II      
Sbjct: 308 YRQADIKAHVKVLEDGKVEVTYDRT-KAVTPGQAAVFYQGEV----CIGSAIIDEVYND 361


>gi|254456653|ref|ZP_05070082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083655|gb|EDZ61081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 372

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/379 (44%), Positives = 243/379 (64%), Gaps = 11/379 (2%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             LNS+ ++K P+D  VVVAMSGGVDSS VA ++K +GY VIG+TL+LY+  K   +   
Sbjct: 3   NELNSIGINKKPEDTTVVVAMSGGVDSSTVAGMMKNEGYKVIGITLKLYDDGKEVAKSKQ 62

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+GQD+ DA+RV   +N+ H +  Y+++F+  VI  F  SY  GETP+PCV CN+TVKF
Sbjct: 63  CCSGQDIMDAKRVAHKLNIEHKILYYQDKFKQGVIDNFVDSYLNGETPIPCVQCNQTVKF 122

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DL  V+++L AD L TGHY++S             M R +D  RDQSYFLF TT++QL 
Sbjct: 123 KDLFEVSKELNADALVTGHYVKSITS-----NNTTNMYRAIDENRDQSYFLFNTTREQLD 177

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            LRFPLG M K+  R++A+++ L++ADK DSQDICFV  G Y  V+++       +G+I 
Sbjct: 178 YLRFPLGGMLKDETREIAKDLDLNVADKPDSQDICFVPNGDYASVIRKFRPDSFQKGNIK 237

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           +L+G ++G H+GIIN+TIGQR+G+ V+  EPL+V+ ++  ++ ++VGP+E L    I L+
Sbjct: 238 NLDGDVIGVHDGIINFTIGQRKGIKVSDKEPLYVLKINSENNEIVVGPKEKLGKKSITLK 297

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
           ++N     L  D        FVK+RS+   +   +  ++D+   V     E G++ GQAC
Sbjct: 298 DLN-----LLTDKKELKKNIFVKVRSTGSLLEAKIDLKDDNTANVSLISPEDGISPGQAC 352

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY  D    +VLGGG I 
Sbjct: 353 VFYNKDQYGHKVLGGGWIK 371


>gi|146300143|ref|YP_001194734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacterium johnsoniae UW101]
 gi|205816863|sp|A5FHA9|MNMA_FLAJO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146154561|gb|ABQ05415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacterium johnsoniae UW101]
          Length = 395

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/403 (29%), Positives = 199/403 (49%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQQQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEEYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +  +  DGK    +    D+ +DQSYFL   +Q+QL    FP+G + K  V
Sbjct: 121 VATGHYCQ-KSEIEVDGKTVYQLIAGNDVNKDQSYFLCQLSQEQLSKALFPIGALTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249
           R++A EM L  A+K DSQ +CF+ + +  + +++       EG IV ++           
Sbjct: 180 REIAAEMELVTAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGTIVQIDKNDPIYNVEKQ 237

Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKN 286
                                 G+++G+H G   +T+GQR+GL V    +PLFV+  D +
Sbjct: 238 AGLSLEEELKIESQKLNYRPEMGKVMGKHQGAHYFTVGQRKGLNVGGTTDPLFVIATDVD 297

Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           ++ +  G       L    +++   E++W+ + L +    +  +   +IR  Q      +
Sbjct: 298 TNTIYTGLTSNHPGLFKKALFVGNSEVHWVREDL-KLKEGEQMEVMARIRYRQPLQKATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +  +G+YV F++ +  +  GQ   +Y     E  ++G G+IS
Sbjct: 357 HQFANGMYVHFDEPQSAITEGQFVAWYL----ENELVGSGVIS 395


>gi|71908904|ref|YP_286491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dechloromonas aromatica RCB]
 gi|123626679|sp|Q47AW0|MNMA_DECAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71848525|gb|AAZ48021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dechloromonas aromatica RCB]
          Length = 365

 Score =  436 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 179/381 (46%), Gaps = 34/381 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               VVV +SGGVDSSV A LLK+ G++VIG+ ++ +      +    C + QD+ D   
Sbjct: 2   SKKTVVVGLSGGVDSSVAALLLKQQGWNVIGLFMKNWEDDDTEE---YCSSRQDLIDVMS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +   V ++   +R  V   F S Y AG TP P + CN  +KF   L    QLGA
Sbjct: 59  VADKIGIDVEVVNFAAEYRERVFAEFLSEYQAGRTPNPDILCNSEIKFKAFLDHAMQLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY   R     +   +  + +  D  +DQSYFL+   Q QL    FPL D+ K 
Sbjct: 119 EKIATGHYAGVR-----EFDGKFQLLKAEDGTKDQSYFLYRLNQAQLSKTLFPLADIYKR 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A   GL +A K DS  ICF+ +  + D + R       +G+I  L +G+++G H+
Sbjct: 174 DVRKIAEAEGLHVAAKKDSTGICFIGERPFKDFLSRYLP--PKKGEIRRLDDGKVMGEHD 231

Query: 258 GIINYTIGQRRGL-----------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           G++ +T+GQR+GL           G    +  FV   D   + + V       +L    +
Sbjct: 232 GLMFHTMGQRKGLHIGGIKEKGHPGGGDHDAWFVAGKDMEKNVLYVVQGHDHPALLKGDL 291

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASG 362
              +++W+         V       K R      P  V+R D +   + F + +  +  G
Sbjct: 292 VAEQLSWVSGNEPHTHWV----YTAKPRYRTSDQPCEVERVDAESCEIRFAEPQWALTPG 347

Query: 363 QACVFYTSDSNEARVLGGGII 383
           Q+ V Y         LGGG+I
Sbjct: 348 QSVVLY----ESRVCLGGGVI 364


>gi|257060381|ref|YP_003138269.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8802]
 gi|256590547|gb|ACV01434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 8802]
          Length = 349

 Score =  436 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/366 (40%), Positives = 206/366 (56%), Gaps = 23/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GY+VIG+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + + H++ D  + F+  ++    S Y AG TPLPC  CNR VKF  +L   R +LG D 
Sbjct: 56  QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLDYARQELGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+  +R  + R +D  +DQSYFL+  +Q+ L    FPLGD  KE  
Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E  L  A K +SQD+C ++  G     + +       EGDIV L G++LG+H GI
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYINQ--KEGDIVDLEGKVLGKHQGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLGVA  EPL+VV LD   ++VIV  R +       +  +NW+        
Sbjct: 231 HHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSHCTVTRLNWVSIAEPSTP 290

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +   +IR     VPV  +   D+ V + F++ E G+  GQA VFY  +     +L
Sbjct: 291 I----RVETQIRYRSSAVPVDLIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----LL 342

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 343 GGGIIE 348


>gi|71897609|ref|ZP_00679854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|71732512|gb|EAO34565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
          Length = 379

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VAMSGGVDSSV A  L      + G+ ++ +         G C A +D  DA  VC 
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   +   V   F + YA G TP P V CNR +KF   L   R+LGAD +
Sbjct: 61  ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R   Y     ++R  + R  D  +DQSYFL    Q+QL    FP+GD++K+ +R
Sbjct: 121 ATGHYARIEHY-----RQRWRLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL    K DS  ICF+ +  + + +K+     A  G+I     Q +  H G+  
Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR+GL +         P +V+  D  ++ + V        L+   +     +W+  
Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   +DG + VDF +++  V  GQ+ V Y  + 
Sbjct: 294 S----PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTRTQWAVTPGQSLVLYDGN- 348

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 349 ---ECLGGAVIATT 359


>gi|319760524|ref|YP_004124462.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039238|gb|ADV33788.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 366

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 28/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V +SGGVDSSV A LLK+ GY V G+ ++ + +    +    C +  D+ DA  VC
Sbjct: 2   KKVIVGISGGVDSSVSAWLLKKRGYKVEGLFMKNWENDDTQEF---CASKSDLIDACSVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           +T+ +  +  ++   + N V   F   Y  G TP P + CN+ +KF   L      LGAD
Sbjct: 59  NTLKIPLHTVNFSREYWNNVFKVFLKLYNIGLTPNPDILCNKEIKFKYFLEFAIEDLGAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       +   +  + R +DL +DQSYFL+   QQQL    FP+G+  K  
Sbjct: 119 FIATGHYVRRI-----NFNNKISLIRGIDLNKDQSYFLYTLNQQQLKHCLFPIGNFTKLK 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A+++ L  A+K DS  ICF+ +  +   +          G IV+++G  +G H G+
Sbjct: 174 VRSIAKKLNLITANKKDSMGICFIGKRNFKKFLSNYIP--IQPGPIVNVHGYKIGTHQGV 231

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YTIGQR+GL +       G+P +VV     ++ +IV        L  ++  +++I W+
Sbjct: 232 PFYTIGQRKGLNIGGIKNSNGKPWYVVDKKIENNSLIVAQGINHPCLMSNQFVVQQIFWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            + +    +    +C VK R  Q     ++   + + + +  +     +  GQ+ VFY +
Sbjct: 292 EECI----LTSPLQCSVKTRYRQPDSKCYIFPISKNNLRIILKYPITAITPGQSAVFYLN 347

Query: 371 DSNEARVLGGGIISG 385
           +    R LGGGII+ 
Sbjct: 348 E----RCLGGGIITK 358


>gi|239787342|emb|CAX83819.1| tRNA-specific 2-thiouridylase MnmA [uncultured bacterium]
          Length = 366

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/373 (50%), Positives = 240/373 (64%), Gaps = 17/373 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   PK  RV VAMSGGVDSSVVAAL+ ++GY V+G+TLQLY+  +A ++  +CCAGQD+
Sbjct: 10  LAGIPKGARVAVAMSGGVDSSVVAALMHKEGYQVVGITLQLYDHGEAIQKTKTCCAGQDI 69

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           YDARRV + I   HYV DYE  F+  VI  FA SY  GETP+PCV CN+ +KF DLL   
Sbjct: 70  YDARRVSEKIGFHHYVLDYESIFKEEVIDDFADSYLRGETPIPCVQCNQKIKFRDLLRTA 129

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R L    L TGHY+++    G+       + +  D  RDQSYFLF+T QQ L  LRFPLG
Sbjct: 130 RDLDCAALVTGHYVQN--INGE-------LHQAHDPSRDQSYFLFSTKQQDLNYLRFPLG 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            + K   R LA E GL+IA+K DSQDICFV  G Y   V ++     + GDIV+L+G+IL
Sbjct: 181 GIPKSQTRILAEEFGLEIANKPDSQDICFVPNGNYAQTVAKLRPEALIAGDIVNLDGKIL 240

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+H GII+YTIGQRRGLG+A  +PL+VV LD   ++VIVGPR +L V  I ++++NW  D
Sbjct: 241 GQHQGIIHYTIGQRRGLGIASVDPLYVVALDPIHNQVIVGPRSALAVTHIPVQDVNWFVD 300

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                    GF C VK+RS+   +   VQ  D+    V  ++ E GV+SGQACVFY    
Sbjct: 301 L---SKYPCGFYCTVKVRSTGAALSAKVQMIDESHALVTLDQPEYGVSSGQACVFYDG-- 355

Query: 373 NEARVLGGGIISG 385
              RV+GGG I  
Sbjct: 356 --TRVIGGGWIKR 366


>gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 373

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 176/374 (47%), Gaps = 28/374 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R VV +SGGVDSSV A LL + G  + G+ +Q ++        G C A +D  DA  VC 
Sbjct: 6   RTVVGVSGGVDSSVAAWLLAQSGEPLAGLFMQNWDDD----GSGECRAEEDRRDAVAVCG 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+ + +   V   F + YAAG TP P V CNR VKF   L   R+LGA+ +
Sbjct: 62  RLGIPFHFRDFSKEYWAGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D ++DQ+YFL    Q QL    FP+G + K  VR
Sbjct: 122 ATGHYAQVLHEGG-----RWRLLRGADRDKDQTYFLHQLGQAQLAATLFPIGHLPKAEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LARE GL    K DS  ICF+ +  + + + R  A  A  G+I    G  +G H G+  
Sbjct: 177 RLAREAGLPTHAKKDSTGICFIGERDFREFLGRYLA--AQPGEIRDPQGVRIGTHPGVFY 234

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D   + + V        L    +    ++W+  
Sbjct: 235 FTLGQREGLAIGGVRGRPAAPWYVVGKDVAGNILYVDQDRDSPWLMAGTVETEAMHWVEG 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  ++R  Q   P  V+  DDG + V F + +     GQ+ V Y    
Sbjct: 295 A----PPATEFDCTAQVRYRQQDEPCRVRVRDDGTLSVRFVRPQRAATPGQSLVLYDG-- 348

Query: 373 NEARVLGGGIISGS 386
                LGG +I+ +
Sbjct: 349 --PVCLGGAVIAST 360


>gi|166712080|ref|ZP_02243287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 378

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 183/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++ +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIAFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D  +DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y    
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLYDG-- 347

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 348 --KECLGGAVIAAT---DAPLERQLA 368


>gi|166367576|ref|YP_001659849.1| tRNA-specific 2-thiouridylase MnmA [Microcystis aeruginosa
           NIES-843]
 gi|205816884|sp|B0JVR4|MNMA_MICAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166089949|dbj|BAG04657.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Microcystis aeruginosa NIES-843]
          Length = 352

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/368 (42%), Positives = 211/368 (57%), Gaps = 23/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F+  +I    S Y AG TPLPC  CN+ VKFS +L   R+ L  D 
Sbjct: 56  QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLQTDT 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    ++   R  + R +D  +DQSYFL+  TQ  L    FPLG+  K   
Sbjct: 116 IATGHYARIRFSPENN---RYQLLRAVDQNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A+E GL  ADK DSQD+C ++  G     + +  A    EGDIV L+G++LG+H+GI
Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIEAHGTMRSFLDKYIA--VSEGDIVDLDGKVLGKHSGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+G+G+A  EPL+VV LD   +RVIVG RES       +  +NW+        
Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSAACLVGRMNWVSIA----E 286

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R     VPV  +   ++ V + F++ +  +  GQA V Y  +     VL
Sbjct: 287 PTTPIRAQVQVRYRSPAVPVNVIPLENNQVKLVFDQPQFSITPGQAAVIYEGEI----VL 342

Query: 379 GGGIISGS 386
           GGGIISG+
Sbjct: 343 GGGIISGA 350


>gi|163755895|ref|ZP_02163012.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Kordia algicida OT-1]
 gi|161324066|gb|EDP95398.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Kordia algicida OT-1]
          Length = 395

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/403 (29%), Positives = 194/403 (48%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVIVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E+++  ++    + Y  G TP P V CNR +KF   L +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFLKIALDLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    +  +GK+   +    D  +DQSYFL   +Q+QL    FP+G++ K  V
Sbjct: 121 VATGHYCRKET-IEKNGKQIHKLLAGKDGNKDQSYFLCQLSQEQLEKSLFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A +  L  A+K DSQ +CF+ + K  D +++       EG IV +            
Sbjct: 180 REIAAKADLITAEKKDSQGLCFIGKVKLPDFLQQQLQ--PKEGVIVEVPNTIKSYHKELP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286
                                +G+++G+H G   +T GQR+GL V    EPLFV+  D  
Sbjct: 238 EFASKEEELAFYAQKYTYNQTDGKVVGKHQGAHYFTKGQRKGLAVGGTVEPLFVIETDVE 297

Query: 287 SSRVIVGP---RESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L    +++ +  ++W+ + L   A  +  +   +IR  Q      +
Sbjct: 298 ENVIYTGQGKSHPGLYRRTLFVTDDELHWVREDLALQA-DESMEVMARIRYRQPLQKAVL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + G YVDFE  +  +  GQ   +Y  +     ++G G+IS
Sbjct: 357 YKIEGGAYVDFETPQSAITEGQFVAWYMDE----ELIGSGVIS 395


>gi|218248292|ref|YP_002373663.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8801]
 gi|226704769|sp|B7K1G5|MNMA_CYAP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218168770|gb|ACK67507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 8801]
          Length = 349

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/366 (40%), Positives = 207/366 (56%), Gaps = 23/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA+L   GY+VIG+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + + H++ D  + F+  ++    S Y AG TPLPC  CNR VKF  +L+  R +LG D 
Sbjct: 56  QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLNYARQELGCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    D+  +R  + R +D  +DQSYFL+  +Q+ L    FPLGD  KE  
Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E  L  A K +SQD+C ++  G     + +       EGDIV L G++LG+H GI
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYIHQ--KEGDIVDLEGKVLGKHQGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLGVA  EPL+VV LD   ++VIV  R +       +  +NW+       A
Sbjct: 231 HHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSDCTVTRLNWVSIA----A 286

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +   +IR     VPV  +   D+ V + F++ E G+  GQA VFY  +     +L
Sbjct: 287 PSTPIRVETQIRYRSSAVPVDLIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----LL 342

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 343 GGGIIE 348


>gi|159028008|emb|CAO87968.1| trmU [Microcystis aeruginosa PCC 7806]
          Length = 352

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/368 (42%), Positives = 211/368 (57%), Gaps = 23/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L   GYDVIG+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + V H++ D  E F+  +I    S Y AG TPLPC  CN+ VKFS +L   R+ L  D 
Sbjct: 56  QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLETDT 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    ++   R  + R +D  +DQSYFL+  TQ  L    FPLG+  K   
Sbjct: 116 IATGHYARIRFSPENN---RYQLMRAVDKNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A+E GL  ADK DSQD+C ++  G     + +  A    EGDIV L+G++LG+H+GI
Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIEAHGTMRSFLDKYIA--VSEGDIVDLDGKVLGKHSGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+G+G+A  EPL+VV LD   +RVIVG RES       +  +NW+        
Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSADCLVGRMNWVSIA----Q 286

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R     VPV  +   ++ V + F++ +  +  GQA V Y  +     VL
Sbjct: 287 PTTPIRAQVQVRYRSPAVPVNVIPLENNQVKLVFDEPQFSITPGQAAVIYEGEI----VL 342

Query: 379 GGGIISGS 386
           GGGIISG+
Sbjct: 343 GGGIISGA 350


>gi|295134761|ref|YP_003585437.1| tRNA methyl transferase [Zunongwangia profunda SM-A87]
 gi|294982776|gb|ADF53241.1| tRNA methyl transferase [Zunongwangia profunda SM-A87]
          Length = 395

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/403 (29%), Positives = 193/403 (47%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KKVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMIVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEQYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFMKIALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  +G++   +    D  +DQSYFL   TQ+QL    FP+G+++K  V
Sbjct: 121 VATGHYCR-KGEIEKNGEKIYQLLSGKDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A E  L  ADK DSQ +CF+ + +  D +++       EG+IV +            
Sbjct: 180 RRIAAEQELVTADKKDSQGLCFIGKVRLPDFLQQKLK--PKEGNIVEIKPDSETYQTGIP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286
                                +G+++G+H G   +T GQR+GL      EPLFV+  D  
Sbjct: 238 EFESKIEELKFLSQKYQYQPQDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVE 297

Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       +    +++   E++W+   L      +  +   +IR  Q      +
Sbjct: 298 DNVIYTGQGKKHPGIYRKGLFINEDEVHWVRKDL-SLKPGESLELKARIRYRQPLQEATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + G+YV F+  +  +  GQ   +Y  +     +LG G+IS
Sbjct: 357 YQTEQGMYVVFKTPQASITEGQFVAWYDGE----ELLGSGVIS 395


>gi|325128645|gb|EGC51514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis N1568]
          Length = 367

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 182/381 (47%), Gaps = 24/381 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++       ++V +SGGVDSSV AALLK+ GY V GV +Q +      +    C   QD 
Sbjct: 1   MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DA  V D I +   + ++  ++++ V   F   Y+AG TP P V CN  +KF   L   
Sbjct: 58  FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD +ATGHY R  +  G        + + +D  +DQSYFL+     QL    FPLG
Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            ++K  VR LA E  L  A K DS  ICF+ +  + + +++        G +V   G+ +
Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230

Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309
           G H G++ YT+GQR+       GEP FV   D   + +IV        L    + + +++
Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368
           +    L E      + C  K R      P  ++  +++   + F++ +  V  GQ+ V Y
Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345

Query: 369 TSDSNEARVLGGGIISGSKRS 389
             D      LGGGII  + + 
Sbjct: 346 DGDI----CLGGGIIQTTDKP 362


>gi|238021297|ref|ZP_04601723.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147]
 gi|237868277|gb|EEP69283.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147]
          Length = 362

 Score =  434 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 183/376 (48%), Gaps = 24/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   ++V +SGGVDSSV AALL + G++V G+ +Q +      +    C   +D  DA  
Sbjct: 2   QSQNIIVGLSGGVDSSVTAALLHQQGHNVRGIFMQNWEDDNNDQ---YCSIKEDSLDAMA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +   + ++  ++++ V   F   Y AG TP P V CN  +KF   L      GA
Sbjct: 59  VADIIGIDIDIVNFAAQYKDKVFAYFLQEYEAGRTPNPDVLCNAEIKFKCFLDHAIAQGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R  +  G        + +  D  +DQSYFL+     QL    FPLG M+K 
Sbjct: 119 EAIATGHYARKEVRNG-----VHYLLKGADGSKDQSYFLYRLQPFQLERALFPLGGMQKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA +  L  A K DS  ICF+ +  + + +++        G++V  +G+I+G H G
Sbjct: 174 EVRRLASDFRLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPDGKIVGEHIG 231

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDG 314
           +  YTIGQR+GLG+   GEP FV   +   + +IV        L    + + +++W    
Sbjct: 232 LTFYTIGQRKGLGIGGAGEPWFVAGKNLARNELIVVQGHDDPLLYSGSLKMNQLSWT--- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373
           L E      + C  K R      P  ++  DD    + F+  +  V  GQ+ V Y  D  
Sbjct: 289 LPEKPAAGRYTC--KTRYRMADAPCELRYLDDHTAELVFDAPQWAVTPGQSAVLYDGDI- 345

Query: 374 EARVLGGGIISGSKRS 389
               LGGGII+ + + 
Sbjct: 346 ---CLGGGIITETDKP 358


>gi|313887530|ref|ZP_07821213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846408|gb|EFR33786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 353

 Score =  434 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 174/372 (46%), Gaps = 27/372 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V++ MSGGVDSSV A LLK  GYDV  V ++ +         G C A +D  D   
Sbjct: 3   EKKKVILGMSGGVDSSVSAILLKEAGYDVTAVFMRNWAEDD-----GMCTAREDYIDVVS 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + + ++  ++E+ +R+ V   F S Y  G TP P V CN  +KF   L       A
Sbjct: 58  VCSQLGIKYFTVNFEKEYRDRVFSYFLSEYKKGRTPNPDVMCNTEIKFKAFLDYAMDFDA 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A GHY R++   G     +  + + +D  +DQSYFL     + L    FP+GD+ K+
Sbjct: 118 DYIAMGHYARTKKVHG-----KTYLLKGLDNNKDQSYFLSRVKSEALEKTLFPVGDLTKD 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A +  L  A K DS  ICF+ +  + + + +        G IV   G++LG H+G
Sbjct: 173 EVRRIAEKYELSTASKKDSTGICFIGERDFNEFLDQFL--FTKPGKIVDEKGKVLGEHSG 230

Query: 259 IINYT---IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
           +++YT          GV  GEP FV   D  ++ +IV        L      + +I W+ 
Sbjct: 231 LMHYTIGQRRGIGIGGVGSGEPFFVADKDLKNNLLIVAQGINNPVLYKDEFEVEDIFWIT 290

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +              VKIR         +++ +D   V  +K   GV  GQ CVFY  D 
Sbjct: 291 EN-----PSLPVDLSVKIRYRASDQAATLEKQNDKYVVKLKKPLKGVTPGQVCVFYQGDV 345

Query: 373 NEARVLGGGIIS 384
                LG GII 
Sbjct: 346 ----CLGSGIIK 353


>gi|58582179|ref|YP_201195.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576740|ref|YP_001913669.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576931|ref|YP_001913860.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75435215|sp|Q5GZR1|MNMA_XANOR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829009|sp|B2SMD7|MNMA_XANOP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58426773|gb|AAW75810.1| tRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188521192|gb|ACD59137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521383|gb|ACD59328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 378

 Score =  434 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            +VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +     G     R  + R  D ++DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y    
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLYDG-- 347

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 348 --KECLGGAVIAAT---DAPLERQLA 368


>gi|257471315|ref|ZP_05635314.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 392

 Score =  434 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++ +        +G C + +D+ DA  +C  +N
Sbjct: 35  VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 91

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 92  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+++ L IA K DS  ICF+   K  + +    +    +GDIV ++G+++G+H+G+  YT
Sbjct: 207 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 264

Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+    GE   P +VV  +   + +IV      + L    +  + INW+    
Sbjct: 265 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 321

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VFY SD   
Sbjct: 322 -YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 378

Query: 375 ARVLGGGIISG 385
              +GGGII  
Sbjct: 379 --CIGGGIIES 387


>gi|219681627|ref|YP_002468013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219624470|gb|ACL30625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 368

 Score =  434 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++ +        +G C + +D+ DA  +C  +N
Sbjct: 11  VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 67

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 68  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+++ L IA K DS  ICF+   K  + +    +    +GDIV ++G+++G+H+G+  YT
Sbjct: 183 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 240

Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+    GE   P +VV  +   + +IV      + L    +  + INW+    
Sbjct: 241 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 297

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VFY SD   
Sbjct: 298 -YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 354

Query: 375 ARVLGGGIISG 385
              +GGGII  
Sbjct: 355 --CIGGGIIES 363


>gi|294788306|ref|ZP_06753549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Simonsiella muelleri ATCC 29453]
 gi|294483737|gb|EFG31421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Simonsiella muelleri ATCC 29453]
          Length = 363

 Score =  434 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 24/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++  ++V +SGGVDSSV AALLK+DG +V GV +Q +      +    C   QD  DA  
Sbjct: 3   ENQNIIVGLSGGVDSSVTAALLKQDGANVHGVFMQNWEDDNNDQ---YCSIKQDSLDAMA 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +   + ++  ++++ V   F   YAAG TP P V CN  +KF   L    + GA
Sbjct: 60  VADIIGIDIDIVNFATQYKDKVFAYFLQEYAAGRTPNPDVLCNAEIKFKCFLDYAIEQGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY R ++  G        + R +D  +DQSYFL+     QL    FPLG ++K 
Sbjct: 120 EAIATGHYARKQIRNG-----VHYLLRGLDNNKDQSYFLYRLQPHQLEKSLFPLGHLQKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR LA E+ L  A K DS  ICF+ +  + + +++        G++V   G+I+G H G
Sbjct: 175 EVRRLATELKLPTATKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 232

Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREINWLGDG 314
           +  YTIGQR+GLG+   GEP FVV  D   +   V+ G   E L  + + + +++W    
Sbjct: 233 LTFYTIGQRKGLGIGGAGEPWFVVGKDLPKNELLVVQGHDHELLYTNSLEMNQLSWT--- 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           L E  V   + C  K R         ++  +DD   + F + +  V  GQ+ V Y  +  
Sbjct: 290 LPEKPVAGRYTC--KTRYRMADAACELRYLSDDTAELLFNEPQWAVTHGQSAVLYDGEI- 346

Query: 374 EARVLGGGIISGSKRS 389
               LGGGII+ + + 
Sbjct: 347 ---CLGGGIITATDKP 359


>gi|307151112|ref|YP_003886496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7822]
 gi|306981340|gb|ADN13221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7822]
          Length = 353

 Score =  434 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/366 (40%), Positives = 202/366 (55%), Gaps = 23/366 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSS  AA L   GY+V+G+TL L       K KG CC+   V DA  +C+ 
Sbjct: 4   VVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLM------KGKGQCCSEGMV-DAAFICEQ 56

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141
           + + H++ D  + F+  +I    S Y AG TPLPC  CNR VKF  +L   R +LG D +
Sbjct: 57  LGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYARQELGIDCI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R R    D+  +R  + R +D  +DQSYFL+  TQ  L    FPLG+  KE  R
Sbjct: 117 ATGHYARIRY---DETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGTIFPLGNQTKEETR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A E GL  ADK +SQD+C ++  G     + +       EGDIV L G++LG+H GI 
Sbjct: 174 RIANEFGLKTADKPESQDLCLIEAHGSMQAFLDQYIHQ--KEGDIVDLKGKVLGKHKGIH 231

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+G+GVA  EPL+VV LD   ++VIVG R         +  +NW+         
Sbjct: 232 HYTIGQRKGIGVAAAEPLYVVKLDPVMNQVIVGNRADAGKPECSVSRMNWVSIA----EP 287

Query: 321 VDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                  V++R     VPV  +   D+ V + F++ + G+  GQA V Y  +     +LG
Sbjct: 288 SSPIHTEVQVRYRSSAVPVDVIPLGDNRVKLVFDEPQFGITPGQAAVLYDGEV----LLG 343

Query: 380 GGIISG 385
           GGII  
Sbjct: 344 GGIIEK 349


>gi|229828822|ref|ZP_04454891.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM
           14600]
 gi|229791985|gb|EEP28099.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM
           14600]
          Length = 361

 Score =  434 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 16/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78
             VVV MSGGVDSSV A LLK +GY VIGVT+Q++    A   +  G CC    V DARR
Sbjct: 5   KTVVVGMSGGVDSSVAAYLLKEEGYRVIGVTMQIWQDESACSLEEHGGCCGLSAVEDARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   I + HYV +++  F++ VI  F   Y  G TP PC+ CNR VK+  LL  +  +GA
Sbjct: 65  VARMIGIPHYVMNFKAEFQDRVIDYFTDEYLRGRTPNPCIACNRYVKWESLLERSLAIGA 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R           R  +   +   +DQ+Y L+  TQ+QL     P+GD  K 
Sbjct: 125 DYIATGHYARVEHLA----NGRYAVRNSVTAAKDQTYALYNLTQEQLAHTLMPVGDYDKP 180

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-IALEGDIVHLNGQILGRHN 257
            +R++A   GL +A K+DS+DICF+    Y   ++R     I   G+ V  +G ++GRH 
Sbjct: 181 RIREIALAAGLPVAHKADSEDICFIPDHDYASFLEREAPDRIPEPGNFVLEDGSVIGRHQ 240

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI +YTIGQR+GLG++   PLFV  +   S+ V++  +E +    +    +N +    F+
Sbjct: 241 GISHYTIGQRKGLGISWDSPLFVKEIRPGSNEVVLTSKEGVFTDHLTFENVNHMAVEAFQ 300

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                G +   KIR S       ++    + + + F +    V  GQA V Y  +     
Sbjct: 301 P----GEEYLAKIRYSDPGCMCRIEAVGQERIRLAFSRKVRAVTPGQALVLYQGEFIA-- 354

Query: 377 VLGGGII 383
             GGG I
Sbjct: 355 --GGGTI 359


>gi|149175981|ref|ZP_01854598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces maris DSM 8797]
 gi|148845135|gb|EDL59481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces maris DSM 8797]
          Length = 369

 Score =  434 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 198/379 (52%), Gaps = 29/379 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---------------KRKG 65
            RVV+AMSGGVDSS  A LL   GY+VIG+ ++   + + +                 K 
Sbjct: 3   QRVVLAMSGGVDSSAAAHLLLEQGYEVIGLFMRSGATEETACAIEDKNSLPVLNLKAHKQ 62

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            CC+  D  DARRV D +++  +  ++++ F   +   FA  Y AG TP PCV CN  +K
Sbjct: 63  GCCSASDAADARRVADMLDIPFHALNFKDAF-GRIKDYFADEYLAGRTPNPCVMCNNWLK 121

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F  L     Q+GA  ++TGHY +      +    +  + R +D  +DQSY LF   +  L
Sbjct: 122 FGKLWEFAEQVGASYISTGHYAQLTSLPDE---TQPALIRGLDRSKDQSYVLFGINRGLL 178

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + FP+G   K  +R++A E GL  A+K DSQ+ICF+    YF  + R        G++
Sbjct: 179 DKIIFPVGGFVKPEIREMAGEAGLRTANKPDSQEICFIPDNDYFGFLNRYRGPQETAGEM 238

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           V  +G ++G+H G  NYTIGQR+ LGVA G P FV+ ++  ++RV++G R+ L  + +  
Sbjct: 239 VDTSGNVVGQHTGYENYTIGQRKRLGVAFGTPRFVIKIEPETNRVVIGTRDELARNSLEA 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
              NWL D    +      +C  +IR         V+  ++D   V F+  E GVA GQA
Sbjct: 299 NRSNWLIDDPGSE-----IRCQAQIRYQHKEADCLVEILDEDRFRVTFDDPEYGVAPGQA 353

Query: 365 CVFYTSDSNEARVLGGGII 383
            V Y  D    RVLGGG I
Sbjct: 354 VVLYDED----RVLGGGWI 368


>gi|291558301|emb|CBL35418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum V10Sc8a]
          Length = 358

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 13/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78
           + + V+AMSGGVDSSV A L+K+  +D IGVT++L+ N      R+ SCC+  DV DAR 
Sbjct: 2   NNKAVIAMSGGVDSSVAAYLMKQRVFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARS 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  ++++ +YVF++ +RF   VI  F  +Y  G TP PC+DCNR +KF  L    ++L  
Sbjct: 62  VAYSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDR 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R     G++G  R ++ + +D  +DQSY L+  TQ+QL    FPLG+M+K 
Sbjct: 122 DYVVTGHYARV--EKGENG--RFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKS 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
             R++A   G   A K+DSQDICFVQ G Y D +++       +GD +  NG ++GRH G
Sbjct: 178 QAREIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +I YT+GQR+GLG++  EPL+V  ++   + V +   + L    +   +IN +       
Sbjct: 238 VIRYTVGQRKGLGISAPEPLYVKAVNPVINTVTLSYNDGLYSSIVKAGDINLISV----P 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +    +   K+R         V +N D +   F++ +  V  GQA V Y  D+    V+
Sbjct: 294 EIKGEMRVKAKVRYRHTEQWATVTQNSDTITAVFDEPQRAVTCGQALVLYDGDT----VV 349

Query: 379 GGGII 383
           GGG I
Sbjct: 350 GGGTI 354


>gi|282901416|ref|ZP_06309341.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193695|gb|EFA68667.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 350

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 149/367 (40%), Positives = 209/367 (56%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA+L   GYDVIG+TL L       K KG CC+   V DA  +C
Sbjct: 3   KKVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCSEGMV-DAATIC 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
             +++ H + D  + F+  ++    S Y+AG TPLPC  CNRTVKF  +L   R+ LG+D
Sbjct: 56  QQLSIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLEYAREKLGSD 115

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ATGHY R      D G  R  + R  D  +DQSYFL+  +Q+ L    FPLG++ K  
Sbjct: 116 VIATGHYARIAY---DHGTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKND 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C V+  G     + +    +   GDIV  NG+ILG+H+G
Sbjct: 173 TRKIAAEYGLKTADKPESQDLCLVESNGSMRAFLDKYL--VPKPGDIVDSNGKILGKHDG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+GLG+A  EPL+V+ LD  ++ V+VG R         +  +NW+       
Sbjct: 231 VHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWVSMAEPRG 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +  V+IR    PV   +   + D V + F++ +  +  GQA V+Y  D    +V
Sbjct: 291 TI----RGEVQIRYRSQPVLATIIPGETDCVQLVFDEPQFSITPGQAAVWYEGD----KV 342

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 343 LGGGIIK 349


>gi|294508524|ref|YP_003572583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1
           [Salinibacter ruber M8]
 gi|294344853|emb|CBH25631.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 [Salinibacter ruber M8]
          Length = 383

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 141/373 (37%), Positives = 198/373 (53%), Gaps = 19/373 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYD 75
           K  RV+VAMSGGVDSSV A LLK  GYDV+G+T++ ++   +  R G    CC+ + + D
Sbjct: 3   KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V       H+V D  E F + VI  F   Y +G TP PCV CN  +K+  LL     
Sbjct: 63  ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L  + +ATGHY   R    DD + R ++ R +D  +DQSY L+   Q+ L    FPLG  
Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251
           +K  +R++A E GLD +ADK DS +ICF+    Y   +K    G+  E   G  V  +G 
Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+G   YTIGQRRGL +A+GE ++V  +D  ++ + VGPRE L    +   EIN +
Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPREELMEQTLTAHEINLV 299

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +            IR + D       Q ++D + V F + +  +  GQ+ V Y  
Sbjct: 300 KYPELDGERPAWGT----IRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYED 355

Query: 371 DSNEARVLGGGII 383
           D     VLGGG I
Sbjct: 356 DD----VLGGGWI 364


>gi|33519851|ref|NP_878683.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia
           floridanus]
 gi|81657434|sp|Q7U353|MNMA_BLOFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33504196|emb|CAD83458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Blochmannia floridanus]
          Length = 369

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 195/373 (52%), Gaps = 28/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V +SGGVDSSV A LL++ GY V G+ ++ + +      K  C + +D+ DA  +C
Sbjct: 2   KKVIVGISGGVDSSVAAWLLQQQGYLVEGLFMKNWENDD---EKEYCSSEEDLSDAWSIC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           +T+ +  +  ++ + +   V   F  +Y +G TP P V CN+ +KF   L    + LGAD
Sbjct: 59  NTLKIPLHTVNFAQEYWENVFQVFLQAYQSGFTPNPDVLCNKEIKFKHFLDFALEDLGAD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       + K++  + + +D  +DQSYFL+   QQQL    FP+G + K +
Sbjct: 119 FIATGHYVRCM-----NVKKKITLMKGIDQNKDQSYFLYTLNQQQLKRCLFPIGSLTKLT 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A+E+ L  A+K DS  ICF+ +  +   +          GDI++++G  LG H GI
Sbjct: 174 VRKIAKELNLITANKKDSTGICFIGKRNFRSFLSNYI--AIQPGDIINIHGNKLGLHQGI 231

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YTIGQR+GL +       G+P +VV  +   + +IV        L      +++I W+
Sbjct: 232 PFYTIGQRKGLNIGGISNGNGKPWYVVDKNITHNVLIVAQGINHPCLMSRIFIVQKIFWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370
              + +  +    +C VKIR  Q  V   +     D + +  ++    +A GQ+ VFY  
Sbjct: 292 KGNILKSPI----QCSVKIRYQQSDVQCQIYPISVDTLKIILKQPVTAIAPGQSAVFY-- 345

Query: 371 DSNEARVLGGGII 383
              +   +GGG I
Sbjct: 346 --IKKHCIGGGTI 356


>gi|255311088|ref|ZP_05353658.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276]
          Length = 358

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 189/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +  ++ V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMENNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|189219049|ref|YP_001939690.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Methylacidiphilum infernorum V4]
 gi|189185907|gb|ACD83092.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Methylacidiphilum infernorum V4]
          Length = 367

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 200/379 (52%), Gaps = 16/379 (4%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
            +++    K+ R+VV MSGGVDS+V A LLKR+G+DV+G+TL+++  R        CC  
Sbjct: 2   PMNVAPIKKNTRIVVGMSGGVDSTVAAYLLKREGFDVVGITLKIWTDRCMHISSEKCCGP 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             + DAR +   I + HYV D  + F   VI  F   Y+ G TP PCV CN  +KF  L 
Sbjct: 62  DAINDARNMAAQIGIPHYVLDEADCFEKEVISYFLREYSLGRTPNPCVKCNEKIKFGRLW 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  +  G + LATGHY        ++      + +  D  RDQSYFLF+ +  QL  +  
Sbjct: 122 TRVQSWGVEYLATGHYALV-----ENQDHIPRLKKAKDKRRDQSYFLFSLSAGQLSRMIT 176

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLN 249
           PLG+++K+ VR +A+E GL++ +K +S+DICFV    Y + ++ +        G I+   
Sbjct: 177 PLGNLEKKEVRAIAKEAGLNVWNKEESRDICFVPGKNYKEFIQGKKTPSNTHSGFIIDEE 236

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+++G H GI  YT+GQR+GL    G PL+VV +D  S  +  G  +SL     Y  + +
Sbjct: 237 GKVIGEHQGIEGYTVGQRKGLPGGQGRPLYVVDIDPESKTIRAGSLKSLFKTHCYASQAH 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+     E  +       VK+R +   V   +     D   +DF   ++G++ GQA V Y
Sbjct: 297 WI-----EKDIESPRPVTVKLRYNYPEVEALLTLLGKDRFRLDFSSPQMGISPGQAAVCY 351

Query: 369 TSDSNEARVLGGGIISGSK 387
             D     VLGGG I   +
Sbjct: 352 DGDI----VLGGGWIERER 366


>gi|21231412|ref|NP_637329.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768534|ref|YP_243296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991657|ref|YP_001903667.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24638306|sp|Q8P9A1|MNMA_XANCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81305494|sp|Q4UUJ7|MNMA_XANC8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829008|sp|B0RT32|MNMA_XANCB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21113079|gb|AAM41253.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573866|gb|AAY49276.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733417|emb|CAP51618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           methyltransferase [Xanthomonas campestris pv.
           campestris]
          Length = 378

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 184/386 (47%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +V +SGGVDSSV A  L +DG  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   RTIVGVSGGVDSSVAAWKLAQDGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     R  + R  D  +DQSYFL    Q QL    FP+G+++K ++R
Sbjct: 121 ATGHYARVAHLGG-----RWRLLRGADRNKDQSYFLHQLGQSQLAATLFPIGELEKSALR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A++ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG + V+FE+ +  V  GQ+ V Y  + 
Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVTVQDDGTLQVNFERPQRAVTPGQSLVLYDGE- 348

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368


>gi|319944511|ref|ZP_08018782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lautropia mirabilis ATCC 51599]
 gi|319742224|gb|EFV94640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lautropia mirabilis ATCC 51599]
          Length = 393

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 122/397 (30%), Positives = 177/397 (44%), Gaps = 52/397 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV +SGGVDS+V A LLK  G+ V G+ ++ +     S+    C + QD  DA  V D 
Sbjct: 13  IVVGLSGGVDSAVSAWLLKEAGWQVTGLFMKNWEDDDDSE---YCSSRQDWLDAASVADV 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +     ++   +R  V   F  +Y AG TP P + CN  +KF   L     LGA+ +A
Sbjct: 70  IGIDLEAVNFAADYRERVFSLFLQAYEAGFTPNPDILCNAEIKFKAFLDHALALGAERIA 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY  +R  +G DG     + R  D  +DQSYFL    Q QL    FPL  + K  VR+
Sbjct: 130 TGHYAGNR--IGPDG--LAQLLRGADANKDQSYFLHRLNQYQLSRAVFPLAGITKPEVRE 185

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A  +GL  A K DS  ICF+ +  + + + R        G +V   G  +G H G+  Y
Sbjct: 186 IAARIGLPNATKKDSTGICFIGERPFREFLSRYLP--TKPGPMVDDRGVQVGEHVGLSFY 243

Query: 263 TIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           T+GQR+G+G+        G P FV   D  S+ +IV        L   R+  R+++W+G 
Sbjct: 244 TLGQRKGIGIGGRRDNADGTPWFVAGKDLASNTLIVVRGHDHPLLLTQRLAARDVHWIGA 303

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-------------------------QRNDDGV 348
                         VK R  Q     +V                         ++    +
Sbjct: 304 APEPGHPYG-----VKCRYRQQDAEGWVQSSSPEEGAATDATPAGASAAVTGAEKPPSRI 358

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            V F + +  V  GQ+ VFY  +      LGG +I  
Sbjct: 359 EVGFAEPQWAVTPGQSVVFYDGEV----CLGGAVIDR 391


>gi|17228854|ref|NP_485402.1| tRNA-specific 2-thiouridylase MnmA [Nostoc sp. PCC 7120]
 gi|24638319|sp|Q8YX56|MNMA_ANASP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17130706|dbj|BAB73316.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Nostoc sp. PCC 7120]
          Length = 352

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 207/367 (56%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+   + DA  +C
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCSEGMI-DAAYIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           + + + H V D  + F+  ++    + Y AG TPLPC  CN+TVKF  ++     +LG D
Sbjct: 55  EQLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYASEKLGCD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+M+K  
Sbjct: 115 RIATGHYARIRY---DEATGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKAD 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C V+  G     + +  A    +GDIV   G++LG+H+G
Sbjct: 172 TRRIATEHGLKTADKPESQDLCLVESNGSMRAFLDKYIA--PKKGDIVDTAGKVLGQHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+GLG+A  EPL+VV LD   ++V+VG R         +  +NW+       
Sbjct: 230 VHHYTIGQRKGLGIAAPEPLYVVELDAVHNKVVVGDRTKATQEECTVNRVNWVSIAEPST 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +  V+IR    P PV V   ++  V + F++ +  +  GQA V+Y  +    +V
Sbjct: 290 PI----RAAVQIRYRSAPEPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGN----KV 341

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 342 LGGGIIE 348


>gi|260062425|ref|YP_003195505.1| tRNA-specific 2-thiouridylase MnmA [Robiginitalea biformata
           HTCC2501]
 gi|88783988|gb|EAR15159.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Robiginitalea biformata HTCC2501]
          Length = 399

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/402 (30%), Positives = 187/402 (46%), Gaps = 47/402 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK+ GY+VIG+ ++ ++    +     C    D  DA  V +
Sbjct: 6   KVVVGLSGGVDSSVTALLLKQQGYEVIGLFMKNWHDDSVT-ISRECPWLDDSNDALIVAE 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D    ++  ++      Y  G TP P V CNR +KF   L +   LGAD +
Sbjct: 65  KLGIPFQTVDLSAAYKERIVNYMFREYQQGRTPNPDVLCNREIKFDLFLKIAMDLGADFV 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G DG+ R  +    D  +DQSYFL    Q+QL    FP+G ++K  VR
Sbjct: 125 ATGHYCRKDEATGPDGQVRYRLLAGADANKDQSYFLCQLNQEQLSRALFPIGHLQKSEVR 184

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248
            LA E GL  ADK DSQ +CF+ + +  + +++       EG IV +             
Sbjct: 185 ALAAENGLVTADKKDSQGLCFIGKVRLPEFLQQQLE--PREGRIVEIPATAPQYLREVPE 242

Query: 249 --------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKNS 287
                               +G+ +G H G   +TIGQR+GL      +PLFV+  D   
Sbjct: 243 FSNRREELAFYSEKPVYDPSDGRDVGLHQGAHYFTIGQRKGLDVGGTPDPLFVIQTDVAK 302

Query: 288 SRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + +  G       L    +++   E++W+   L  +      +   +IR  Q      + 
Sbjct: 303 NIIYTGQGKSHPGLYRRTLFVADDELHWVRPDLSLN-PDQTMEVQARIRYRQALQQATLY 361

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + + G+YVDF + +  +  GQ   +Y  D     ++G G+I+
Sbjct: 362 KIEGGLYVDFREPQSAITEGQFVAWYLGD----ELIGSGVIA 399


>gi|25298369|pir||C84960 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [imported] - Buchnera sp. (strain APS)
 gi|10038936|dbj|BAB12971.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 392

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++ +        +G C + +D+ DA  +C  +N
Sbjct: 35  VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 91

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 92  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+++ L IA K DS  ICF+   K  + +    +    +GDIV ++G+++G+H+G+  YT
Sbjct: 207 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 264

Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+    GE   P +VV  +   + +IV      + L    +  + INW+    
Sbjct: 265 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 321

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VFY SD   
Sbjct: 322 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYVSDI-- 378

Query: 375 ARVLGGGIISG 385
              +GGGII  
Sbjct: 379 --CIGGGIIES 387


>gi|28952048|ref|NP_240085.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11135216|sp|P57349|MNMA_BUCAI RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++ +        +G C + +D+ DA  +C  +N
Sbjct: 11  VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 67

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 68  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+++ L IA K DS  ICF+   K  + +    +    +GDIV ++G+++G+H+G+  YT
Sbjct: 183 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 240

Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+    GE   P +VV  +   + +IV      + L    +  + INW+    
Sbjct: 241 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 297

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VFY SD   
Sbjct: 298 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYVSDI-- 354

Query: 375 ARVLGGGIISG 385
              +GGGII  
Sbjct: 355 --CIGGGIIES 363


>gi|331269731|ref|YP_004396223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum BKT015925]
 gi|329126281|gb|AEB76226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum BKT015925]
          Length = 346

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 197/367 (53%), Gaps = 28/367 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V + +SGGVDSSV A LLK  GYD+IG+T+++ +   +              DA +V
Sbjct: 2   NKKVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVS-------------EDAAKV 48

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +++ D  + F+N VI  FA  Y  G TP PC  CN+ +KF  LL   ++LGAD
Sbjct: 49  AEKLDIPYHILDLRDEFKNRVIDNFAEEYLQGRTPNPCAMCNKYIKFGVLLEKAKELGAD 108

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      ++   R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K  
Sbjct: 109 YIATGHYARV-----EEHNGRYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQ 163

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNG 258
           +R++AR +GL++ DK +S DICF+    +   ++ +        G+ V   G ILG+H G
Sbjct: 164 IREIARNLGLEVHDKKESMDICFIPDNDHGKYIQGLECKNRIKAGNFVDKEGNILGKHKG 223

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +I YTIGQR+GLG+++G+P FV+ +    + V+VG    +    +  +++N++   L E+
Sbjct: 224 LIYYTIGQRKGLGLSLGKPGFVIDIIPERNEVVVGDESEIFNSGLIAKDVNFIPFDLLEN 283

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +   KIR S       +   +DG + V F   +  +  GQ  VFY  D     +
Sbjct: 284 P----MEVEAKIRYSTTKSKATIIPFEDGKIKVMFNDKQRAITKGQRVVFYIQD----ML 335

Query: 378 LGGGIIS 384
           +GGG I 
Sbjct: 336 VGGGTIE 342


>gi|311085999|gb|ADP66081.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086574|gb|ADP66655.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087155|gb|ADP67235.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087689|gb|ADP67768.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 392

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++ +        +G C + +D+ DA  +C  +N
Sbjct: 35  VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 91

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 92  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+++ L IA K DS  ICF+   K  + +    +    +GDIV ++G+++G+H+G+  YT
Sbjct: 207 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 264

Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+    GE   P +VV  +   + +IV      + L    +  + INW+    
Sbjct: 265 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 321

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VFY SD   
Sbjct: 322 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 378

Query: 375 ARVLGGGIISG 385
              +GGGII  
Sbjct: 379 --CIGGGIIES 387


>gi|219682184|ref|YP_002468568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621917|gb|ACL30073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
          Length = 368

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VAMSGGVDSSV A +LK+  Y V G+ ++ +        +G C + +D+ DA  +C  +N
Sbjct: 11  VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 67

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143
           +  +  ++   +   V   F   Y  G TP P + CN+ +KF+  L+ + ++L AD +AT
Sbjct: 68  IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R +   G     + ++ + +D  +DQSYFL+     QL  + FP+G +KK  VR++
Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A+++ L IA K DS  ICF+   K  + +    +    +GDIV ++G+++G+H+G+  YT
Sbjct: 183 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 240

Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           IGQR+GLG+    GE   P +VV  +   + +IV      + L    +  + INW+    
Sbjct: 241 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 297

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D +     C  K R  Q  +   ++  N+  + + F+     V  GQ+ VFY SD   
Sbjct: 298 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 354

Query: 375 ARVLGGGIISG 385
              +GGGII  
Sbjct: 355 --CIGGGIIES 363


>gi|293400445|ref|ZP_06644590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305471|gb|EFE46715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 391

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 29/378 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            +V++ +SGGVDS+V A +LK  GYDV    ++ ++S   +   G+       C   QD 
Sbjct: 7   QKVLLGLSGGVDSAVAAYILKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDY 66

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D + +     D+ + + + V   F   Y  G TP P + CN+ +KF   +   
Sbjct: 67  LDAKAVADKLGLPLLRVDFVKEYWDNVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMKYA 126

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LG D+LATGHY +      +       M R  D  +DQ+YFL   +Q  L    FP+G
Sbjct: 127 RKLGFDILATGHYAQV-----EHTPLYSRMLRGADSNKDQTYFLCQVSQDALAHALFPIG 181

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-Q 251
           ++ K  VR++A+++ L+ +A K DS  ICF+ +  + + ++      + +GDIV ++  +
Sbjct: 182 NLNKAEVREIAQKLELESVATKKDSTGICFIGERNFKEFLQNYLP--SQDGDIVDIHSLE 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307
           ++GRH G++ YTIGQR+GLG+   + P FVV  D + + + V     ++ L      +  
Sbjct: 240 VIGRHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNGNEKDWLYSTSCIVSG 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           +NWL     E    + + C  K R  Q    + +Q  D+  V V + +    V  GQ  V
Sbjct: 300 VNWLRPHKPE----NEYACTAKFRYRQQDHEISLQFIDETTVLVCYPQGVASVTCGQEAV 355

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY         LGGG+I 
Sbjct: 356 FYDG----QECLGGGVIE 369


>gi|156741716|ref|YP_001431845.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus castenholzii DSM
           13941]
 gi|156233044|gb|ABU57827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseiflexus castenholzii DSM 13941]
          Length = 383

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/376 (40%), Positives = 211/376 (56%), Gaps = 20/376 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++AMSGGVDSS+ AALL   G+DV GVTL L+        +  CC+ +    ARRVC 
Sbjct: 15  KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YVF+Y+  FR +VI  F   YA+G TP PC++CNR +KF  LL+  R LG D +
Sbjct: 75  QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 134

Query: 142 ATGHYIRSRL---------YVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ATGHY R R+             +G +R    + R +D E+DQSY L+   Q  L  L F
Sbjct: 135 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 194

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           P+G+  K  VR LA   GL  A++ +SQDICFV  G Y ++++         G I+ L G
Sbjct: 195 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 254

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           + +GRH G+  YTIGQRRGLG+A G+P++V+ LD   + VIVGP  +L    +    + +
Sbjct: 255 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 314

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +     E      F C  +IR+  D VP  V   + + V V FE  +  +  GQA VFY 
Sbjct: 315 VSGSWPE----APFDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFYD 370

Query: 370 SDSNEARVLGGGIISG 385
                A VLGGG I+ 
Sbjct: 371 G----AVVLGGGRIAR 382


>gi|15605008|ref|NP_219792.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|237804632|ref|YP_002888786.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255317389|ref|ZP_05358635.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276s]
 gi|6647880|sp|O84289|MNMA_CHLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3328701|gb|AAC67880.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|231272932|emb|CAX09843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436728|gb|ADH18898.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11222]
 gi|297748416|gb|ADI50962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis D-EC]
 gi|297749296|gb|ADI51974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis D-LC]
          Length = 358

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|126661854|ref|ZP_01732853.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Flavobacteria bacterium BAL38]
 gi|126625233|gb|EAZ95922.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Flavobacteria bacterium BAL38]
          Length = 395

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/403 (29%), Positives = 194/403 (48%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEQYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  + ++GK    +    D  +DQSYFL   +Q QL    FP+G++ K  V
Sbjct: 121 VATGHYCR-KGTIEENGKEVFQLLAGKDDNKDQSYFLCQLSQDQLAKALFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH------------- 247
           R++A ++ L  A+K DSQ +CF+ + +  + +++       EG IV              
Sbjct: 180 REIATKLDLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGIIVEIPADATVFNQEKP 237

Query: 248 --------------------LNGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKN 286
                               + G+++G+H G   +T GQR+GL      EPLF++  D  
Sbjct: 238 HFNSNEEAFAFEAKRIDYLKVPGKVMGKHQGAHYFTKGQRKGLNVGGTKEPLFIIETDVE 297

Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L    +++   E++W+ + L      +  +   +IR  Q      +
Sbjct: 298 KNIIYTGQGNNHPGLFKKALFIANNEVHWIREDL-SLKEGETLEVMARIRYRQPLQKATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +  DG+YV FEK +  +  GQ   ++ +D     VLG G+I+
Sbjct: 357 HQFKDGMYVVFEKPQSAITEGQFVAWHHND----EVLGSGVIA 395


>gi|16330399|ref|NP_441127.1| tRNA-specific 2-thiouridylase MnmA [Synechocystis sp. PCC 6803]
 gi|3122978|sp|P73755|MNMA_SYNY3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|1652889|dbj|BAA17807.1| sll0844 [Synechocystis sp. PCC 6803]
          Length = 358

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 153/366 (41%), Positives = 211/366 (57%), Gaps = 23/366 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AALL R GY V+GVTL L       K KG CC+ + + DA  +C
Sbjct: 3   QKVVVGLSGGVDSSVAAALLHRQGYAVVGVTLWLM------KGKGQCCS-EGLVDAASIC 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + V H + D  + F+N +I      Y  G TPLPC  CN+ VKF  +L   +Q LG D
Sbjct: 56  EQLGVPHEIVDTRDLFQNHIIDYLVQGYGEGVTPLPCSQCNKAVKFGPMLQYAQQSLGID 115

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    ++  +R  + R +D ++DQSYFL+  +Q+ L    FPLG+  K  
Sbjct: 116 KIATGHYARIRF---NEASQRYELLRAVDRQKDQSYFLYDLSQEILAATLFPLGEQTKTV 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R LA E  L  A+K DSQD+C ++  G   D + +  A     G+IV L+G +LG H G
Sbjct: 173 TRQLAAEFDLSTAEKKDSQDLCLIEAHGSMRDFLDKYIA--PKAGEIVDLSGAVLGHHEG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R+S      Y++ +NW+       
Sbjct: 231 IHHYTIGQRKGLGIAAAEPLYVVKLDPVMNRVIVGDRQSAGSGECYVQRLNWVSI----P 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +C V++R    PV V  +  +D  + + F++ + G+  GQA V Y  D    RV
Sbjct: 287 EPTAPIRCEVQVRYRSAPVTVNAIPWHDQQIKLVFDEPQFGITPGQAAVLYDGD----RV 342

Query: 378 LGGGII 383
           LGGGII
Sbjct: 343 LGGGII 348


>gi|225012689|ref|ZP_03703124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium MS024-2A]
 gi|225003222|gb|EEG41197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium MS024-2A]
          Length = 394

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/400 (29%), Positives = 195/400 (48%), Gaps = 43/400 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R++V +SGGVDSSV A LLK++GY+VIG+ ++ ++    +     C   +D  DA  V
Sbjct: 3   KGRIIVGLSGGVDSSVAAYLLKKEGYEVIGLFMKNWHDETVT-LSNECPWLEDSNDAMLV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +     D  + ++  ++      Y+ G TP P V CNR +KF   L +   LGAD
Sbjct: 62  AEKLGIPFQTVDLSKEYKERIVDYMFDEYSKGRTPNPDVLCNREIKFDVFLEIALSLGAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +   +    G     +    D  +DQSYFL    Q+QL  + FP+G ++KE 
Sbjct: 122 YVATGHYCQKTFFATPSGDHIHQLKSGADNNKDQSYFLCQLNQKQLSHVLFPIGHLQKEE 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248
           VR +A E  L  ADK DSQ +CF+ + +  D +++     + +G I+ +           
Sbjct: 182 VRKIALEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLK--SKKGSIIEISTDFSVYAGSE 239

Query: 249 ------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSR 289
                             +G I+G HNG   YT+GQR+GLGV    EPLFV+  + + + 
Sbjct: 240 TSHKDLINRAKKVRYQPTDGAIVGEHNGAHFYTVGQRKGLGVGGNVEPLFVIDTNVDDNT 299

Query: 290 VIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344
           + VG       L  + + +   +I+W+   L      +      +IR  Q      + + 
Sbjct: 300 IYVGQGKEHPGLYRYALAVAQEDIHWVRGDLAL-RPGETLSIQARIRYRQALQKATLFQT 358

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  +YV F++ +  + SGQ   +Y    +E  +LG G+I+
Sbjct: 359 ESALYVSFDEPQSAITSGQFVAWY----HEKELLGSGVIT 394


>gi|313674593|ref|YP_004052589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marivirga tractuosa DSM 4126]
 gi|312941291|gb|ADR20481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marivirga tractuosa DSM 4126]
          Length = 378

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 211/386 (54%), Gaps = 19/386 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+VIG+T++ ++  S  +SK++  CC+   + DA
Sbjct: 3   KKGRVLVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGSSKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   HY+ D  E F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RNLAVNLGFPHYILDIREEFGDYVIDHFTDEYLAGRTPNPCVLCNTHIKWDSLLRRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY + R     +   R I+ R  DL +DQSY L+  +Q+ L     PLGD+ 
Sbjct: 123 GCDYIATGHYAKVR-----EENGRYIISRGKDLNKDQSYALWGVSQESLSRTILPLGDLT 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A + G  ++ +KS+S +ICFV    Y   +KR   G+  E   G+ V  +G +
Sbjct: 178 KPEIRKMAEDKGFYELVNKSESYEICFVPDNDYRGFLKRRVEGLEEEVKGGEFVLEDGTV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G   YT+GQR+GLG+A+G P++V  + K+ +RV++G  + L    +Y++ +    
Sbjct: 238 VGTHEGYPFYTVGQRKGLGIALGYPVYVTEIQKDKNRVVLGTFDELSRDGMYVKNLV--- 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 ++ D      K+R + D  P  +++  D + V F      +A GQA VFY  D 
Sbjct: 295 -MSKYTSLEDRLDTVTKVRYNDDGAPAVIEQVGDTMKVFFGNGVPAIAPGQAAVFYEGDD 353

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
               V+GGG I  S     ++   LS
Sbjct: 354 ----VIGGGWIHSSFNQQKLKNEALS 375


>gi|89890355|ref|ZP_01201865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517270|gb|EAS19927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 392

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/399 (29%), Positives = 186/399 (46%), Gaps = 45/399 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV A LLK  G++VIG+ ++ ++    +     C   +D  DA  V D
Sbjct: 3   KVVVGLSGGVDSSVAAYLLKEQGHEVIGLFMKNWHDDTVT-ISDECPWLEDSNDAMLVAD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E+++  ++      YA G TP P V CNR +KF   + +  +LGAD +
Sbjct: 62  KLGIPFQTVDLSEQYKERIVDYMFDEYARGRTPNPDVLCNREIKFDVFMDIALELGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +    +  DGK    +    DL +DQSYFL   +Q+QL    FP+G ++K  VR
Sbjct: 122 ATGHYCQKTTTMI-DGKEIHHLIGGADLNKDQSYFLCQVSQEQLARTIFPIGHLQKPEVR 180

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248
           ++A    L  A K DSQ +CF+ + +  D +++        GDI+ +             
Sbjct: 181 EIAASQDLITAGKKDSQGLCFIGKVRLPDFLQQQLK--PKTGDIIEIPAQVSMDKAVVVN 238

Query: 249 -----------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKNSSRV 290
                             G+ LG H G   +T GQR+GL       PLFV+  D  S+ +
Sbjct: 239 DEDALVTLSRKRHYQAHEGKKLGTHQGAHYFTRGQRKGLAVGGTPLPLFVIETDVESNTI 298

Query: 291 IVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
            VG       L    +++   E++W+ + L      +      +IR  Q      +   D
Sbjct: 299 FVGQGKQHPGLYRRGLFIDKSELHWIREDLAL-KSGEKMDVMARIRYRQTLEKAVLHIVD 357

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            G Y+ F+  +  ++ GQ   +Y  +      LG G+IS
Sbjct: 358 QGAYLIFDTPQSAISPGQFAAWYQDN----ECLGSGVIS 392


>gi|325955195|ref|YP_004238855.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922]
 gi|323437813|gb|ADX68277.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922]
          Length = 397

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 193/402 (48%), Gaps = 47/402 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LLK  GY+VIG+ ++ +N    +     C   +D  DA    
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMRNWNDASVTLED-ECPWIEDSADALLTA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N+   V D    ++  ++    + Y  G TP P V CNR +KF   L    +LGAD 
Sbjct: 61  EKLNIPFQVIDMSASYKERIVDYMFAEYEQGRTPNPDVLCNREIKFDLFLKTALELGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R   ++  +GK    + + +D  +DQSYFL   +Q+QL    FP+G+++K  V
Sbjct: 121 VATGHYARKNSFIDKNGKEIFQLIKGVDNNKDQSYFLCQLSQEQLSKALFPIGNLEKSEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+ + L  ADK DSQ +CF+ +    + +++       +G I+ +            
Sbjct: 181 RRIAKNLDLVTADKKDSQGLCFIGKVSLPEFLQQQL--RPKKGKIIEIPKSSSIYQKEEK 238

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKN 286
                                +G+I+G H G   +T GQR+GLGV    EPLFV+  D  
Sbjct: 239 HFPTIEKKLENQAAAISYKKTDGEIVGEHQGAHFFTRGQRKGLGVGGKAEPLFVLATDVQ 298

Query: 287 SSRVIVGP---RESLEVHRIY--LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L    ++    EI+W+ + +      +  +   +IR  Q      +
Sbjct: 299 ENIIYTGQGHDHPGLLKDALFIQADEIHWIREDMAL-KEGESLEVQARIRYRQPLQKATL 357

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  +G++V F+  +  +  GQ C +Y  D     ++G G+I
Sbjct: 358 HQTKNGLFVAFDTPQSAITEGQFCAWYIED----ELVGSGVI 395


>gi|255348647|ref|ZP_05380654.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70]
 gi|255503187|ref|ZP_05381577.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70s]
          Length = 358

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTIIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|146277942|ref|YP_001168101.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC
           17025]
 gi|205817026|sp|A4WTT2|MNMA_RHOS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145556183|gb|ABP70796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 378

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 190/379 (50%), Positives = 241/379 (63%), Gaps = 12/379 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            LNSL   K P   RVVVAMSGGVDSSVVAA L  DGYDV+GVTLQLY+   A  +KG+C
Sbjct: 5   PLNSLGFAKPPSATRVVVAMSGGVDSSVVAAELAADGYDVVGVTLQLYDHGAALAKKGAC 64

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           CAG+D++DARRV +T+   HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF 
Sbjct: 65  CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL   + L AD +ATGHYI+ ++     G     +    D  RDQSYFLF+TT++QL  
Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GAAGPELHCAADAARDQSYFLFSTTREQLDY 179

Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           LRFPLG +  K   R LA   GL +ADK DSQDICFV  G Y  V++++  G A  G+IV
Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAAVIEKLRPGAADPGEIV 239

Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            L G +LG H G+I+YTIGQ R      +G+PLFVV LD    +VIVGPRE+L    + +
Sbjct: 240 DLAGNVLGAHRGVIHYTIGQRRGLGIGGLGDPLFVVRLDPERRQVIVGPREALSTRIVPV 299

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364
           REINWLGD          ++   K+RS++ P    ++  +D    V+    E GV+ GQA
Sbjct: 300 REINWLGDAPLTSQA--EWQVMAKVRSTRAPREAVIRPISDTEAEVELIAPEDGVSPGQA 357

Query: 365 CVFYTSDSNEARVLGGGII 383
           CVF+     ++R+LGGG I
Sbjct: 358 CVFHV--PGDSRILGGGWI 374


>gi|149372147|ref|ZP_01891417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [unidentified eubacterium SCB49]
 gi|149354914|gb|EDM43476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [unidentified eubacterium SCB49]
          Length = 418

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 123/407 (30%), Positives = 188/407 (46%), Gaps = 49/407 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  
Sbjct: 20  KKKRVVVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAML 78

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++     D    ++  ++      Y  G TP P V CNR +KF   L +  +LGA
Sbjct: 79  VAQALDIPFQTVDLSAEYKERIVDYMFREYKMGRTPNPDVLCNREIKFDVFLKIALELGA 138

Query: 139 DVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D +ATGHY R         DGK    +    D  +DQSYFL   +Q+QL    FP+G++ 
Sbjct: 139 DFVATGHYCRKGISQETTADGKPIYQLLSGKDSNKDQSYFLCQLSQEQLSKTLFPIGELL 198

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------- 248
           K  VR +A    L  A+K DSQ +CF+ + +  + +++  A    EG IV +        
Sbjct: 199 KPEVRKIAAAQNLITAEKRDSQGLCFIGKVRLPEFLQQQLA--PKEGVIVEIPADSEVYQ 256

Query: 249 -------------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVY 282
                                    +G+ +G H G   +T GQR+GL      E LFV+ 
Sbjct: 257 KKDVSFSSETEALKSLSSKQTYSVSDGKKVGTHQGAHYFTKGQRKGLAVGGTKEALFVID 316

Query: 283 LDKNSSRVIVGP---RESLEVHRIY--LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337
            D   + V  G       L    ++    EI+W+   L  + + +  +   +IR  Q   
Sbjct: 317 TDVKENVVYTGQGKTHPGLYRRGLFIQADEIHWVRQDLAIE-IGEKMEVEARIRYRQPLE 375

Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              + R +DG+YV FE ++  +A GQ   +Y ++     ++G G+IS
Sbjct: 376 KATLHRVEDGLYVIFENAQSAIAEGQFAAWYKNE----ELIGSGVIS 418


>gi|83816248|ref|YP_446592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinibacter ruber DSM 13855]
 gi|123528021|sp|Q2RZN9|MNMA_SALRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83757642|gb|ABC45755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinibacter ruber DSM 13855]
          Length = 383

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 198/373 (53%), Gaps = 19/373 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYD 75
           K  RV+VAMSGGVDSSV A LLK  GYDV+G+T++ ++   +  R G    CC+ + + D
Sbjct: 3   KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V       H+V D  E F + VI  F   Y +G TP PCV CN  +K+  LL     
Sbjct: 63  ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L  + +ATGHY   R    DD + R ++ R +D  +DQSY L+   Q+ L    FPLG  
Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251
           +K  +R++A E GLD +ADK DS +ICF+    Y   +K    G+  E   G  V  +G 
Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+G   YTIGQRRGL +A+GE ++V  +D  ++ + VGP+E L    +   EIN +
Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPKEELMEQTLTAHEINLV 299

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +            IR + D       Q ++D + V F + +  +  GQ+ V Y  
Sbjct: 300 KYPELDGERPAWGT----IRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYED 355

Query: 371 DSNEARVLGGGII 383
           +     VLGGG I
Sbjct: 356 ED----VLGGGWI 364


>gi|205822073|sp|A7NK07|MNMA_ROSCS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/376 (40%), Positives = 211/376 (56%), Gaps = 20/376 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++AMSGGVDSS+ AALL   G+DV GVTL L+        +  CC+ +    ARRVC 
Sbjct: 3   KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + +YVF+Y+  FR +VI  F   YA+G TP PC++CNR +KF  LL+  R LG D +
Sbjct: 63  QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 122

Query: 142 ATGHYIRSRL---------YVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ATGHY R R+             +G +R    + R +D E+DQSY L+   Q  L  L F
Sbjct: 123 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 182

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           P+G+  K  VR LA   GL  A++ +SQDICFV  G Y ++++         G I+ L G
Sbjct: 183 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 242

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           + +GRH G+  YTIGQRRGLG+A G+P++V+ LD   + VIVGP  +L    +    + +
Sbjct: 243 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 302

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
           +     E      F C  +IR+  D VP  V   + + V V FE  +  +  GQA VFY 
Sbjct: 303 VSGSWPE----APFDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFYD 358

Query: 370 SDSNEARVLGGGIISG 385
                A VLGGG I+ 
Sbjct: 359 G----AVVLGGGRIAR 370


>gi|313899166|ref|ZP_07832687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. HGF2]
 gi|312956035|gb|EFR37682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. HGF2]
          Length = 393

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 188/384 (48%), Gaps = 29/384 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            +V++ +SGGVDS+V A LLK  GYDV    ++ ++S   +   G+       C   QD 
Sbjct: 10  QKVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDY 69

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D + +     D+ + + + V   F   Y  G TP P + CN+ +KF   +   
Sbjct: 70  LDAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDAFMDYA 129

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LG D LATGHY +      D       M R  D  +DQ+YFL   +Q  L    FP+G
Sbjct: 130 RRLGFDTLATGHYAQV-----DHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPIG 184

Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-Q 251
            M+K+ VR++A  M L  +A+K DS  ICF+ +  + + +K      + +GDI+ +   +
Sbjct: 185 HMEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLP--SRDGDIMDIKTLE 242

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
           ++GRH+G++ YTIGQR+GLG+     P FVV  D   + + V      + L      +  
Sbjct: 243 VVGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCIVSG 302

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           +NW       +     + C  K R  Q    V ++  D+  V++ + +    V +GQ  V
Sbjct: 303 VNWFS----SERPQGDYVCTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAV 358

Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390
           FY  +      LGGG+I    +  
Sbjct: 359 FYQKE----ECLGGGVIEDVFKEG 378


>gi|167772092|ref|ZP_02444145.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM
           17241]
 gi|167665890|gb|EDS10020.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM
           17241]
          Length = 349

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 196/365 (53%), Gaps = 22/365 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSSV A LLKR GY+V G T +L+N           C   +V DAR VCD 
Sbjct: 5   VLVAMSGGVDSSVAALLLKRQGYEVAGATFELFN----------GCPEGNVRDARAVCDC 54

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYVFDY   F+  V+  F  SY  G+TP PCV CNR+VKF   L    +LG   ++
Sbjct: 55  LGIRHYVFDYRALFQKRVLEHFVDSYLTGKTPNPCVACNRSVKFGAFLQDAMRLGYTHIS 114

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY        D    R  + R     +DQSY L+  +Q+QL  L  P+    K+ VR 
Sbjct: 115 TGHYAGVAY---DQTAGRYCLQRSRQTRKDQSYVLYHLSQEQLSRLLLPVDGYTKDEVRA 171

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
            A E GL +  K+DSQDICFV  G Y   ++R     +  G+ +   G+++GRH G+++Y
Sbjct: 172 FAAEAGLPVQAKADSQDICFVPDGDYAAFIERYTGQASEPGNFIDDEGRVIGRHRGVLHY 231

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLGVA G   +V  LD  ++ V +    S+   ++   ++  +   + E     
Sbjct: 232 TIGQRRGLGVAFGTHRYVRRLDPGANTVTLSDESSVFCDQLIADDLRLIAFDVLETP--- 288

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             +   KIR +  P P  +   D+G ++V F+  +  +  GQA VFY  D    RVLGG 
Sbjct: 289 -LRACAKIRYAHTPAPATITMLDEGRIHVRFDTPQRAITPGQAVVFYDDD----RVLGGA 343

Query: 382 IISGS 386
            I  +
Sbjct: 344 TIVTA 348


>gi|218439179|ref|YP_002377508.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7424]
 gi|226704768|sp|B7KHE5|MNMA_CYAP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218171907|gb|ACK70640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7424]
          Length = 349

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 149/367 (40%), Positives = 201/367 (54%), Gaps = 23/367 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSS  AA L   GYDV+G+TL L       K KG CC+   V DA  +C+
Sbjct: 3   RVVVGLSGGVDSSTAAASLHHQGYDVVGLTLWLM------KGKGQCCSEGMV-DAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + + H++ D  + F   +I    S Y  G TPLPC  CNR VKF  +L+  R +LG D 
Sbjct: 56  QLGIPHHIVDSRDVFEKNIIDYLVSGYEVGITPLPCSQCNRAVKFGPMLNYARQELGIDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D+   R  + R +D  +DQSYFL+  TQ  L    FPLG+  KE  
Sbjct: 116 IATGHYARIGY---DEVSGRYQLLRAVDRNKDQSYFLYDLTQDLLAATLFPLGNQTKEET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E GL  ADK +SQD+C ++  G   + + +       EGDIV L G++LG+H GI
Sbjct: 173 RRIAHEFGLKTADKPESQDLCLIEAHGSMQEFLDKYIKQ--KEGDIVDLKGKVLGKHKGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLGVA  EPL+VV LD   +RVIVG R         +  +NW+        
Sbjct: 231 HHYTIGQRKGLGVAAPEPLYVVKLDPIMNRVIVGNRADAGQSECNVSRMNWVSIPDPSTP 290

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +        ++R    PV V  +   D+ + + F++ + G+  GQA V Y  D     +L
Sbjct: 291 IQTE----AQVRYRSFPVRVNVIPLGDNRITLVFDEPQFGITPGQAAVLYQGDI----LL 342

Query: 379 GGGIISG 385
           GGGII  
Sbjct: 343 GGGIIEK 349


>gi|108756833|ref|YP_631693.1| tRNA-specific 2-thiouridylase MnmA [Myxococcus xanthus DK 1622]
 gi|123374481|sp|Q1D6N0|MNMA_MYXXD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|108460713|gb|ABF85898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Myxococcus xanthus DK 1622]
          Length = 348

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 158/364 (43%), Positives = 203/364 (55%), Gaps = 18/364 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSS  AALLK  G++VIG+TL+++ S +     GSCC+  D+ DAR V 
Sbjct: 1   MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKATCGSCCSPDDIDDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T+ +  YV + EE F++ VI PF  SY  G TP+PCV CNR VKF+ LL   R LGA  
Sbjct: 60  QTLGIPFYVANAEEIFQDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGA-R 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R     G     R ++ R +D  +DQSYFLF   Q +L D+ FP+G M K  V
Sbjct: 119 LATGHYARVEEVDG-----RFVLRRAVDAAKDQSYFLFTLGQDELRDILFPVGGMTKAEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A   GL  + K +S +ICFV  G Y   V+++ AG    GDIV   G +LG H GI 
Sbjct: 174 RAVAERHGLVTSQKPESMEICFVPDGDYAGFVEKV-AGPQPAGDIVDTEGNVLGTHQGIH 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+GL +  GE  +V  L+  + RV+VGP E        L + +W+         
Sbjct: 233 RYTVGQRKGLNLGGGEIRYVHRLEPETQRVVVGPAEGTGRDNFGLLQPHWVDGPPPASQP 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V+     V+IR         V  +  G V V  +     V  GQA V Y  D    RVLG
Sbjct: 293 VE-----VRIRHRHSGAQGRVHVSPHGLVSVKLDAPARAVTPGQAAVVYDQD----RVLG 343

Query: 380 GGII 383
           GG I
Sbjct: 344 GGWI 347


>gi|56752503|ref|YP_173204.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC
           6301]
 gi|81300318|ref|YP_400526.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC
           7942]
 gi|81561195|sp|Q5MZ36|MNMA_SYNP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123556790|sp|Q31N30|MNMA_SYNE7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56687462|dbj|BAD80684.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Synechococcus elongatus PCC 6301]
 gi|81169199|gb|ABB57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus elongatus PCC 7942]
          Length = 357

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 146/371 (39%), Positives = 207/371 (55%), Gaps = 23/371 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDSSV AALL R GY V G+TL L       K KG CC+   V DA  +C+
Sbjct: 3   RVVVGLSGGVDSSVAAALLHRQGYAVEGLTLWLM------KGKGQCCSEGMV-DAAGICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + V ++V D  +RF+ A++      Y AG TPLPC  CNR VKF  +L   + +L AD 
Sbjct: 56  QMGVPYHVVDSRDRFQEAIVDYVVQGYEAGITPLPCSQCNRAVKFGPMLDYAKTELKADA 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    +    R  + R +D  +DQ+YFL+   Q  L  ++FPLG++ K   
Sbjct: 116 IATGHYARLR---QNPETGRTELLRAVDRNKDQTYFLYDLPQSVLQSVKFPLGELTKPET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E+GL  A+K +SQD+C  +  G     + R     + EG+IV  +G++LG+H GI
Sbjct: 173 RQIAAELGLRTAEKPESQDLCLAEVHGSMRAFLDRYIE--SREGEIVDQSGRVLGKHTGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+V+ +D   +RV+VG R S       +  +NW+        
Sbjct: 231 HHYTIGQRKGLGIAHSEPLYVIAIDPIQNRVVVGDRHSAAQSECTVSRVNWVSIA----Q 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V++R    PVP  V     D   + F   +  +  GQA V+Y  D    R+L
Sbjct: 287 PDAPIQAAVQVRYRSAPVPCTVIPLAGDRARILFADPQFSITPGQAAVWYDGD----RLL 342

Query: 379 GGGIISGSKRS 389
           GGG+I   +R+
Sbjct: 343 GGGLIDRVERT 353


>gi|223986197|ref|ZP_03636216.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM
           12042]
 gi|223961834|gb|EEF66327.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM
           12042]
          Length = 381

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 28/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+++V +SGGVDS+V A LLK+ G DV    ++ ++S   +   G+       C   +D 
Sbjct: 2   MKILVGLSGGVDSAVAAYLLKQQGLDVTCAFMRNWDSMANNDFLGNPNADDDVCPQEKDW 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D++ +     D+ + + + V   F   Y  G TP P + CN+ +KFS  L   
Sbjct: 62  MDAKSVADSLGLELLRVDFVKEYWDNVFSNFLQEYKKGRTPNPDILCNKYIKFSSFLDFA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+ G D LATGHY R R      G     + +  DL +DQSYFL       L    FPLG
Sbjct: 122 RRRGFDTLATGHYARVRHEADFSG-----LYKAHDLNKDQSYFLCQVASDALRHTLFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           +++K  VR +A+E+ L IA+K DS  ICF+ +  + + +K      A  G IV + + ++
Sbjct: 177 EIEKPEVRRIAKELRLSIAEKKDSTGICFIGERNFREFLKNYLP--AKSGKIVDVISRRV 234

Query: 253 LGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           LG H G++ YTIGQR+       G P FVV  D   + ++V      + L      +  +
Sbjct: 235 LGDHEGVLYYTIGQRKGLGIGGEGGPWFVVGKDVVHNELLVASGESNDWLLSDTCLVSGV 294

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NWL              C  K R  Q   PV ++  D+  V + + +    V  GQ  VF
Sbjct: 295 NWLA----RTKPQGALSCCAKFRYRQKDNPVTLEFLDETTVRLTYPQQVASVTPGQQAVF 350

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +    + LGGG+I 
Sbjct: 351 YLGE----QCLGGGVIE 363


>gi|120436568|ref|YP_862254.1| tRNA methyl transferase [Gramella forsetii KT0803]
 gi|205816859|sp|A0M3J2|MNMA_GRAFK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117578718|emb|CAL67187.1| tRNA methyl transferase [Gramella forsetii KT0803]
          Length = 395

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/403 (29%), Positives = 194/403 (48%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V 
Sbjct: 2   KKVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMMVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  DKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R   +   DG+    +    D  +DQSYFL   TQ+QL    FP+G+++K  V
Sbjct: 121 VATGHYCRKAEFEK-DGEPIYQLLSGEDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A E  L  A+K DSQ +CF+ + +  D +++     + EG IV +            
Sbjct: 180 RKIAAEQNLVTAEKKDSQGLCFIGKVRLPDFLQQKLK--SKEGVIVEVPAGNDSYLEEDI 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286
                                +G+++G+H G   +T GQR+GL      EPLFV+  D  
Sbjct: 238 NFKSKIDQLQHLSKKFNYQLTDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVI 297

Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       +    +++   E++W+   L  D+  +  +   +IR  Q      +
Sbjct: 298 ENVIYTGQGKDHPGIYRQGLFIAQDEVHWVRRDLAIDS-DEELRIKARIRYRQPLQDATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + ++G+YV F++ +  +  GQ   +Y +      +LG G+IS
Sbjct: 357 HQTENGMYVIFDQPQASITEGQFVAWYQN----GELLGSGVIS 395


>gi|296272288|ref|YP_003654919.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096463|gb|ADG92413.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 376

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/382 (34%), Positives = 192/382 (50%), Gaps = 32/382 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                +VVV MSGGVDSSV A LLK+ GYDVIG+ ++ +           C    +  DA
Sbjct: 9   PAGKKKVVVGMSGGVDSSVTALLLKQQGYDVIGLFMRNWEYGIKGS---QCPNRIEFEDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++V + I +     D+ E +R  V   F      G TP P + CNR +KF+  L+  +++
Sbjct: 66  KKVGELIGIEVLGKDFVEEYRTKVFDVFLEGLKKGLTPNPDILCNREIKFNVFLNEAKKM 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GADV+ATGHY +   Y     K   ++  P D  +DQSYFL A + +QL    FPLGD+ 
Sbjct: 126 GADVIATGHYAKIAKY-----KDHYVLDTPKDSSKDQSYFLHALSSEQLSHAMFPLGDLT 180

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ VR++AR   L ++DK DS  ICF+   ++ + + +     A+ GDIV  NG++LGRH
Sbjct: 181 KKEVREIARLHNLPVSDKKDSTGICFIGNQRFDEFITQHLK--AIPGDIVDENGKVLGRH 238

Query: 257 NGIINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
            G+I YT+GQR+G+G+              P +    +   + + V        L    +
Sbjct: 239 KGLICYTLGQRKGIGLGGIKETETANHIHNPWYAAKKNMEDNTLTVVQDTNHPLLMNQSV 298

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362
               ++W+     E+A   G K   +IR  Q      V +   D V V F+K +  V  G
Sbjct: 299 EASHMHWV----LEEAPKVGDKLMAQIRYRQQKQACTVTEVTGDKVLVQFDKPQRAVTLG 354

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q+ V Y  D      LGGG IS
Sbjct: 355 QSLVLYEGD----YCLGGGFIS 372


>gi|166154498|ref|YP_001654616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis 434/Bu]
 gi|166155373|ref|YP_001653628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335758|ref|ZP_07224002.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis L2tet1]
 gi|205813555|sp|B0B7K3|MNMA_CHLT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205813565|sp|B0BBR8|MNMA_CHLTB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|165930486|emb|CAP03979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis 434/Bu]
 gi|165931361|emb|CAP06933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 358

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 187/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L     +L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVLELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|15835177|ref|NP_296936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia muridarum Nigg]
 gi|7190601|gb|AAF39399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia muridarum Nigg]
          Length = 373

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 184/371 (49%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ +  +  +   G C A +D  D  ++
Sbjct: 18  KTVIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQI 74

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   Y  G TP P V CNR +KF  L    R+L  D
Sbjct: 75  AEQLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGD 134

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T ++ L ++ FPLG M K  
Sbjct: 135 FLATGHYCR----GGLDGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTE 187

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR LA E GL  A K DS  ICF+ +  +   +++        GDIV  +  +++G H G
Sbjct: 188 VRQLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNS--PGDIVDFDTQKVVGCHEG 245

Query: 259 IINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL    M +P +V+  D   + V +        L    +  +E+NW    
Sbjct: 246 AHYYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWFV-- 303

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                +     C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 304 ----PLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV- 358

Query: 374 EARVLGGGIIS 384
               LGGG+I+
Sbjct: 359 ---CLGGGVIA 366


>gi|197119634|ref|YP_002140061.1| tRNA-specific 2-thiouridylase MnmA [Geobacter bemidjiensis Bem]
 gi|197088994|gb|ACH40265.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
          Length = 355

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/375 (41%), Positives = 210/375 (56%), Gaps = 25/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72
           +  N K  +V VAMSGGVDSS VAALLK  G +VIG+ ++L+    +  + KG       
Sbjct: 1   MSGNFKGKKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V + + +  ++   EE+F   ++  F + Y  GETP PCV CNR VKF  LL  
Sbjct: 54  --DAQIVAEYLGIEFHLVHLEEQFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LGA+ LATGHY+R+      D      + +   L +DQSYFL+  TQ+QL  + FPL
Sbjct: 112 ALELGAEYLATGHYVRTSR----DDGGSYHLLKAAFLAKDQSYFLYTLTQKQLSHVVFPL 167

Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           GDM  K+ VR LA + GL +A KSDSQ+ICFV    Y   +++        GDIVH++G 
Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGT 227

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LGRH G   YTIGQRRGLGVA  EPL+VV +D    RV+VG    L    +   ++NW+
Sbjct: 228 VLGRHGGTHRYTIGQRRGLGVAWKEPLYVVSIDALQGRVVVGEAGQLFASGLVACDLNWV 287

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTS 370
                     + F+   KIR  Q P+   V+   +G+  V F + +  V  GQ+ VFY  
Sbjct: 288 VPVE-----GETFETTCKIRYRQQPIACRVKLLGEGLGEVYFAEPQKSVTPGQSVVFYRE 342

Query: 371 DSNEARVLGGGIISG 385
           D     +LGGG I G
Sbjct: 343 D----ELLGGGRIVG 353


>gi|253682565|ref|ZP_04863362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum D str. 1873]
 gi|253562277|gb|EES91729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum D str. 1873]
          Length = 346

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 196/366 (53%), Gaps = 28/366 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V + +SGGVDSSV A LLK  GYD+IG+T+++ +   +              DA ++ 
Sbjct: 3   KKVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVS-------------EDAAKIA 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++ +++ D  + F+N VI  FA  Y  G TP PC  CN+ +KF  LL   ++LGAD 
Sbjct: 50  QKLDIPYHILDLRDEFKNHVIDNFAKEYLQGRTPNPCAMCNKYIKFGVLLQKAKELGADY 109

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++   R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K  +
Sbjct: 110 IATGHYARV-----EEHNGRYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQI 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259
           R++AR + L++ DK +S DICF+    +   ++ +        G+ V   G ILG+H G+
Sbjct: 165 REIARNLDLEVHDKKESMDICFIPDNDHGKYIQSLECKDRIKPGNFVDKQGNILGKHKGL 224

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YTIGQR+GLG+++G+P FVV +    + V+VG    +    +  ++IN++      D+
Sbjct: 225 IYYTIGQRKGLGLSLGKPGFVVDIIPERNEVVVGDESEIFNSGLIAKDINFI----PFDS 280

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S       +   ++G V V FE  +  +  GQ  VFY  D     +L
Sbjct: 281 LENPMEVEAKIRYSTTKSKATIIPFEEGKVKVVFEDKQRAITKGQRVVFYIQD----MLL 336

Query: 379 GGGIIS 384
           GGG I 
Sbjct: 337 GGGTIE 342


>gi|319954152|ref|YP_004165419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellulophaga algicola DSM 14237]
 gi|319422812|gb|ADV49921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellulophaga algicola DSM 14237]
          Length = 396

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 117/403 (29%), Positives = 190/403 (47%), Gaps = 47/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KKVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDTVT-ISDECPWLEDSNDAMIVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D    ++  ++      YA G TP P V CNR +KF   + +  QLGAD 
Sbjct: 61  EKLGIPFQTVDLSAEYKERIVDYMFDEYAKGRTPNPDVLCNREIKFDVFMKIALQLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +  +    DG     +    D  +DQSYFL   +Q+QL    FP+G++ K  V
Sbjct: 121 VATGHYCKKGIIKNSDGSETYQLLAGEDPNKDQSYFLCQLSQEQLAKTLFPVGELLKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A    L  ADK DSQ +CF+ + +  D +++       +G I+ +            
Sbjct: 181 RRIAAANELITADKKDSQGLCFIGKVRLPDFLQQKLK--PKKGVIIEVPSTIAHFQEAPT 238

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286
                                +G+++G H G   +T GQR+GL      EPLFV+  D +
Sbjct: 239 EFLNKNEELAYFAKKPIYHLTDGKVVGNHQGAHYFTKGQRKGLDVGGTKEPLFVIETDVD 298

Query: 287 SSRVIVGP---RESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L    +++ +  ++W+   L    + D  +   +IR  Q+     +
Sbjct: 299 ENIIYTGQGKAHPGLYRRTLFVSDAELHWVRTDLAL-KMDDSLQVLARIRYRQELQKATL 357

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + G+YVDFE+ +  +  GQ   +Y  D     ++G G+IS
Sbjct: 358 YKVEGGMYVDFEEKQSAITEGQFVAWYLKDD----LIGSGVIS 396


>gi|205829096|sp|B1XM11|MNMA_SYNP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 353

 Score =  431 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/366 (40%), Positives = 203/366 (55%), Gaps = 23/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V +SGGVDSSV A +L R GY V GVTL L       K KG CC+   V DA  +C+
Sbjct: 3   KVAVGLSGGVDSSVTAGILHRQGYTVEGVTLWLM------KGKGQCCSEGMV-DAADICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + + H++ D  + F+  ++    S Y  G TPLPC  CNR VKF  +L   + +LG D 
Sbjct: 56  QLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRMVKFGPMLQWAKAELGIDQ 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R    +D   R  + R +D  +DQSYFL+  TQ+ L    FPLG+M K   
Sbjct: 116 IATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDLTQEMLAGTLFPLGEMTKGET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A EM L  A K +SQD+C ++  G     + +       EG+IV L+G++LG H GI
Sbjct: 173 RQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ--REGEIVDLDGKVLGHHTGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+VV LD   +RV+V  R+        ++ +NWL        
Sbjct: 231 HHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRAGQSECTVQRMNWLAL----PG 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +    +  V++R     VPV V     D + + FE+ + G+  GQA V Y  D    RVL
Sbjct: 287 ITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQFGITPGQAAVLYDGD----RVL 342

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 343 GGGIIE 348


>gi|312129941|ref|YP_003997281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leadbetterella byssophila DSM 17132]
 gi|311906487|gb|ADQ16928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leadbetterella byssophila DSM 17132]
          Length = 368

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 19/377 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+V+G+T++ ++  S   +K++  CC+   + DA
Sbjct: 3   KRGRVLVAMSGGIDSSLAAVLLHEQGYEVVGMTMKTWDYASSGGTKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   HY+ D    F ++VI  F   Y  G TP PCV CN  +K+  LL     L
Sbjct: 63  RAIAVNLGFPHYILDIRSEFGDSVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADNL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY + R   G     R ++ R  D  +DQSY L+  +Q+ L     PLGD+ 
Sbjct: 123 NCEFIATGHYAKIRQENG-----RYVISRGKDTTKDQSYVLWGVSQESLSRTLLPLGDLT 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++AR+ G  D+ +KS+S +ICFV    Y   +KR   G+  +   G+ V  NGQ+
Sbjct: 178 KAEIREMARQKGFYDLVNKSESYEICFVPDNDYRGFLKRRIEGLEEQVAGGNFVLENGQV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GL +A+G P+FV  + K ++ V++G  E L+ + + + ++N   
Sbjct: 238 VGKHEGYPFYTIGQRKGLKIALGYPVFVTEIRKETNEVVLGTEEYLKKNGMVVSKLNL-- 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
              +      G +   KIR        F+++ D D + V+F +    +A GQA VFY  D
Sbjct: 296 -QKYASIPEGGLESLTKIRYKDQGEMAFIRQTDADKIEVEFSQPVSAIAPGQAAVFYEGD 354

Query: 372 SNEARVLGGGIISGSKR 388
                V+GGG I  S R
Sbjct: 355 D----VIGGGWIMKSYR 367


>gi|270285349|ref|ZP_06194743.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Nigg]
 gi|270289365|ref|ZP_06195667.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Weiss]
 gi|301336746|ref|ZP_07224948.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum MopnTet14]
 gi|14195289|sp|Q9PKA7|MNMA_CHLMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 358

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 184/371 (49%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ +  +  +   G C A +D  D  ++
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   Y  G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T ++ L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGLDGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR LA E GL  A K DS  ICF+ +  +   +++        GDIV  +  +++G H G
Sbjct: 173 VRQLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNS--PGDIVDFDTQKVVGCHEG 230

Query: 259 IINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL    M +P +V+  D   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                +     C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I+
Sbjct: 344 ---CLGGGVIA 351


>gi|76789009|ref|YP_328095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis A/HAR-13]
 gi|123606993|sp|Q3KM75|MNMA_CHLTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76167539|gb|AAX50547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis A/HAR-13]
          Length = 358

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG + K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGVYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|296435803|gb|ADH17977.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9768]
 gi|296437663|gb|ADH19824.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11074]
 gi|297140162|gb|ADH96920.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9301]
          Length = 358

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPNEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|328950099|ref|YP_004367434.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450423|gb|AEB11324.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
           DSM 14884]
          Length = 374

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 199/368 (54%), Gaps = 20/368 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV+ AMSGGVDSSV AALLK  GY+VIG  ++ +   K      +CC+    Y+ARR
Sbjct: 5   RKGRVLAAMSGGVDSSVTAALLKEQGYEVIGAMMRFWPDNKPEDCFNTCCSPDAAYEARR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D I +  Y+ DY E F   +I PF   Y  GETP+PCV CN  VKF  LL   R LG 
Sbjct: 65  VADQIGIPFYLLDYREVFEVEIIQPFLEGYRRGETPIPCVWCNTRVKFDALLKKARMLGC 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R       +G +     R  D  +DQ+YFL+ T ++ +  + FP+G M+K 
Sbjct: 125 DYVATGHYVRRV-----EGPQGIEFHRGGDPRKDQTYFLWGTPREAMPHILFPVGHMQKP 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR LA   GL  A K +SQ+ICFV  G     ++    G    G ++ L  G+++G H 
Sbjct: 180 EVRRLAERFGLITAKKPESQNICFVP-GSVRAFLEEHLGG--QPGPVIDLETGEVIGEHA 236

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQR+GLG+       +VV +   ++ VIVGPRE+ +   +  REIN     L 
Sbjct: 237 GAQFYTVGQRKGLGLWKTHLERYVVEVRPQTNEVIVGPREACQWRGLEAREIN-----LL 291

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSDSNEA 375
            D          ++R  Q P    V+    G +V +F++ +  V  GQ+ V Y  D    
Sbjct: 292 LDPETLPEVVTAQVRYRQRPARARVRELGAGRFVLEFDEPQFAVTRGQSVVLYDGD---- 347

Query: 376 RVLGGGII 383
           R+LGGG+I
Sbjct: 348 RLLGGGVI 355


>gi|325285134|ref|YP_004260924.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489]
 gi|324320588|gb|ADY28053.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489]
          Length = 396

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/403 (29%), Positives = 194/403 (48%), Gaps = 47/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV A LLK  GYDVIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KKVVVGLSGGVDSSVTAYLLKEQGYDVIGLFMKNWHDDSVT-ISNECPWLEDSNDALIVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D    ++  ++    + Y  G TP P V CNR +KF   + +  QLGAD 
Sbjct: 61  EKLGIPFQTVDLSAEYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMQLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R   ++ ++GK    +    D  +DQSYFL   +Q+QL    FP+GD+ K  V
Sbjct: 121 VATGHYCRKTSFINEEGKEIHQLLAGKDGNKDQSYFLCQLSQEQLSKTLFPIGDLLKPEV 180

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A +  L  ADK DSQ +CF+ + +  D +++       +G IV +            
Sbjct: 181 RKIAADNDLITADKKDSQGLCFIGKVRLPDFLQQKLK--PKQGVIVEVSSSLEQYNNAIP 238

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286
                                +G+++G H G   +T GQR+GL      EPLFV+  D +
Sbjct: 239 EFATKEDELAFYATKPVYNLNDGKVVGEHQGAHYFTKGQRKGLAVGGTKEPLFVIETDVD 298

Query: 287 SSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L    +++   E++W+   +  + V +  +   +IR  Q      +
Sbjct: 299 ENVIYTGQGKKHPGLYRKTLFVSNEELHWVRTDMALE-VDETMEVMARIRYRQALQKATL 357

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + D G+YVDF++ +  +  GQ   ++  D     ++G G+IS
Sbjct: 358 YKVDTGLYVDFKEEQSAMTEGQFVAWHIGD----ELIGSGVIS 396


>gi|254230168|ref|ZP_04923562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
 gi|151937306|gb|EDN56170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
          Length = 341

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 175/348 (50%), Gaps = 28/348 (8%)

Query: 49  GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108
           G+ ++ +      +    C A +D+ DA+ VCD + +  +  ++   + + V   F + Y
Sbjct: 2   GLFMKNWEEDDNEE---YCTAAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEY 58

Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPM 167
            AG TP P + CN+ +KF   L    + L AD +A GHY+R       D   +  M R +
Sbjct: 59  KAGRTPNPDILCNKEIKFKAFLEFADEVLDADYIAMGHYVRRSF---PDNGEKPAMLRGL 115

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           D  +DQSYFL+  + +Q+    FP+GD++K  VR +A E GL  A K DS  ICF+ + K
Sbjct: 116 DGNKDQSYFLYTLSHEQIGRSLFPVGDLEKPEVRRIAEEQGLVTAKKKDSTGICFIGERK 175

Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-------GEPLFV 280
           + D + R     A  G+I    G+++G+H G++ +T+GQR+GL +          EP FV
Sbjct: 176 FTDFLGRYLP--AQPGNIETPEGEVIGQHQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFV 233

Query: 281 VYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337
              D   + +I         L+   +   +++W+      + + D  KC VK R  Q+ +
Sbjct: 234 GEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWVD----REPIRDVMKCTVKTRYRQEDI 289

Query: 338 PVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           P  +   DD  + V F++ ++ V  GQ+ VFY  D      LGGGII 
Sbjct: 290 PCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDV----CLGGGIIE 333


>gi|119512160|ref|ZP_01631251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nodularia spumigena CCY9414]
 gi|119463191|gb|EAW44137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nodularia spumigena CCY9414]
          Length = 351

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/367 (38%), Positives = 208/367 (56%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  AA+L   GY+VIG+TL L       K KG CC+   + DA  +C
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCSEGMI-DAADIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + V H V D  E F+  ++    + Y+AG TPLPC  CN+TVKF  ++   R+ L  D
Sbjct: 55  EQLGVPHEVVDIREVFQTQIVDFLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREKLDCD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      D+   R  + R +D  +DQSYFL+  +Q+ L    FPLG + K  
Sbjct: 115 RIATGHYAQINY---DEATGRYQLLRAVDRNKDQSYFLYDLSQELLKATVFPLGKLDKAD 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  A+K +SQD+C V+  G     + +  A     GDIV + G++LG+H+G
Sbjct: 172 TRRIAAEYGLTTANKPESQDLCLVESNGSMRAFLDKYLA--PKPGDIVDVAGKVLGQHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+GLG+A  EPL+V+ LD  +++V+VG R         + ++NW+       
Sbjct: 230 VHHYTIGQRKGLGIAAAEPLYVIELDAVNNKVVVGDRTKGTQPECTVNQVNWVSMAEPST 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +  V+IR    P PV V   ++  V + F++ +  +  GQA V+Y  D    +V
Sbjct: 290 PI----RAEVQIRYRSSPTPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGD----KV 341

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 342 LGGGIIE 348


>gi|169338047|ref|ZP_02621467.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum C str. Eklund]
 gi|169295231|gb|EDS77364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum C str. Eklund]
          Length = 350

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 201/367 (54%), Gaps = 27/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V V +SGGVDSSV A LLK  GYD+IG+T+++ +    S             DA++V 
Sbjct: 6   KKVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSSDLDVS------------EDAKKVA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +++ +YV D  E F+  VI  FA  Y  G TP PC  CN+ +KF  +L   ++LGAD 
Sbjct: 54  EKLDIPYYVIDLTEEFKKRVINSFAEEYLQGRTPNPCAVCNKYIKFGAMLEKAKELGADY 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++   R ++    D ++DQ+Y  ++ TQ  L  +  P G+  K  +
Sbjct: 114 IATGHYARI-----EEHNGRILVLNAKDDKKDQTYMFYSLTQDVLKHVLMPCGEYTKVQI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259
           R++A+ +G+++ +K +S DICF+    +   ++++        G+ V  NG +LG+H G+
Sbjct: 169 REIAKNIGIEVHNKKESMDICFIPDNDHGKYIQQLECKDRIKPGNFVDENGNVLGKHKGL 228

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           I YTIGQR+GLG+++G+P FV+ +    + V++G  E +  + +  +++N++      D+
Sbjct: 229 IYYTIGQRKGLGLSLGKPGFVIDIIPERNEVVIGDEEEIFNNGLIAKDVNFI----PFDS 284

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +  +   KIR S       +   D+G +   F+  +  +  GQ  VFY  D     ++
Sbjct: 285 LENTMEVEAKIRYSTTKSKATIIPYDNGKIKAMFKDKQRAITKGQRVVFYIED----MLV 340

Query: 379 GGGIISG 385
           GGG I  
Sbjct: 341 GGGTIES 347


>gi|47093434|ref|ZP_00231199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 4b H7858]
 gi|47018213|gb|EAL08981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 4b H7858]
          Length = 333

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/350 (32%), Positives = 173/350 (49%), Gaps = 23/350 (6%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           ++ ++    +   G C A +D  D  RV + I + +Y  ++E+ + + V   F   Y  G
Sbjct: 1   MKNWDD---TDEFGVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLG 57

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
            TP P V CN+ +KF   L     LGAD +ATGHY + +    +       + R +D  +
Sbjct: 58  RTPNPDVMCNKEIKFKAFLEHAESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNK 112

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231
           DQ+YFL   +Q QL  + FPLG M+K  VR++A++ GL  A+K DS  ICF+ +  +   
Sbjct: 113 DQTYFLNQLSQDQLKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQF 172

Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRV 290
           +       A  G++  LNG++LG+H+G++ YTIGQR GLG+   GEP FVV  D   + +
Sbjct: 173 LSEYLP--AQPGEMRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVL 230

Query: 291 IV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347
            V      E+L    +   +I++  +      +    +C  K R  Q    V V   +DG
Sbjct: 231 FVEQGFHHETLYSDSLIATDISFTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDG 286

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
              V F      +  GQA VFY  D      LGGG I    ++ A  + +
Sbjct: 287 TAEVVFADPVRAITPGQAVVFYDGDI----CLGGGTIDTVWKNGAKLDYV 332


>gi|297616542|ref|YP_003701701.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144379|gb|ADI01136.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 340

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 190/363 (52%), Gaps = 26/363 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V MSGGVDS V A LLK  GYDVIG+T+  ++              +    A  V  
Sbjct: 4   RVAVLMSGGVDSGVAALLLKEQGYDVIGLTMLNWS-------------AEVCQKAAEVAR 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +SH+V D    F+  VI  F  +Y  G TP PCV CN  VKF  +L     +G   +
Sbjct: 51  FLGISHHVVDLRAEFKRQVIDYFCRTYEEGLTPNPCVVCNEFVKFGLMLEQAWDVGCRWV 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R  L   D+   R ++ + +D ++DQSYFL+   Q QLC L FPLG+M K+  +
Sbjct: 111 ATGHYARVEL---DETTGRHLLKKGVDPKKDQSYFLYRLKQNQLCRLLFPLGNMTKQETK 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A + GL +A   +SQ++CF++ G Y   +        + G I    G +LG H G+I+
Sbjct: 168 SIAAKYGLPVAKAEESQEVCFIE-GDYRQFLAA-KGVKGVPGPIRDQEGNVLGTHQGLIS 225

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG+  G P +V+ LD  ++ ++VG  + L    +   + N++      +++ 
Sbjct: 226 YTVGQRRGLGLRAGRPFYVIDLDTRNNTLVVGEEKELYRQELLATDNNFI----PFESLT 281

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +      KIR +       +     G+ V+F   +  V  GQ+ V+Y  D     V+GGG
Sbjct: 282 EPLMVEAKIRYTAPLAQARLTPVSGGIKVEFVHPQRAVTRGQSVVYYQGDV----VVGGG 337

Query: 382 IIS 384
           II+
Sbjct: 338 IIA 340


>gi|95930240|ref|ZP_01312978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133703|gb|EAT15364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 346

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/367 (39%), Positives = 202/367 (55%), Gaps = 24/367 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   V+VAMSGGVDSSV AALL   GY+VIG  ++L    ++ + +          DARR
Sbjct: 2   KKNTVLVAMSGGVDSSVTAALLIDQGYEVIGAHMRLLPGDQSIQGE---------ADARR 52

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +  +  D  + F  A+I  F   Y AG TP PCV CN+  KF  L ++  +LGA
Sbjct: 53  IAEELEIPFHSLDCRDTFNAAIIGDFCREYRAGRTPNPCVRCNQQFKFGALFALADELGA 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R      D  K    +CR +  ++DQSYFLF  +  QL  + FPLG + K 
Sbjct: 113 DYLATGHYARI-----DRQKDHVRLCRGLYKQKDQSYFLFVLSAAQLKRVLFPLGGLTKP 167

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+LA +  L    KS+SQDICFV    Y   ++R ++     G+IVH+NG++LG H+G
Sbjct: 168 EVRNLAEKYHLSSRKKSESQDICFVPDNDYIGFLERYDSPWPDHGEIVHINGKVLGTHHG 227

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+   EPL+V+ LD    RVIVG + +L+  R+ +R++ W        
Sbjct: 228 THRYTIGQRRGLGIGWTEPLYVIELDAEQQRVIVGEKAALQRDRLQVRDVTW-----SVP 282

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +   +IR    P    +    +G V V F++ + GV  GQ  VFY  D     V
Sbjct: 283 PQHTSLRVDCRIRYRHHPAMATLSIRPNGDVDVVFDEPQYGVTPGQCAVFYDDDC----V 338

Query: 378 LGGGIIS 384
           LGGG I+
Sbjct: 339 LGGGWIT 345


>gi|198282965|ref|YP_002219286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666259|ref|YP_002425168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|259495823|sp|B7J5X6|MNMA_ACIF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|259495824|sp|B5ENY8|MNMA_ACIF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|198247486|gb|ACH83079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518472|gb|ACK79058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 352

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 204/370 (55%), Gaps = 22/370 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D + ++A+SGGVDS+V A L++  GY++ GVT++L+        +  CC  +D+ DA  +
Sbjct: 3   DKKALIALSGGVDSAVAALLMQGQGYELTGVTMRLWP-------RSRCCDEKDIEDAAEI 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  + + + V DY E FR  V+  F + Y AG TP PC  CN+ +KF  LL+   +LGA 
Sbjct: 56  CARLGIPYTVLDYREAFRRQVVDVFVAEYQAGRTPNPCARCNQFLKFDALLAEGEKLGAT 115

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LATGHY R       +      + R  D  +DQSYFLFA     L  LRFP+G M K+ 
Sbjct: 116 MLATGHYARLA-----ETSSGTALLRGRDHAKDQSYFLFAIGAGILSRLRFPVGGMNKDE 170

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQILGRHNG 258
           VR +AR+ GL +A K DSQDICFV  G Y   ++      +A EG++V  +GQ+LG H G
Sbjct: 171 VRAMARKHGLPVAAKQDSQDICFVPDGDYRRFLEDYAGLDMAQEGEMVDSSGQVLGHHPG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
            +++T+GQR+GLG    +P +V+ LD   +RVIVG  + L    + L E NWL D     
Sbjct: 231 TLHFTVGQRKGLGGGSDQPRYVLALDPAQNRVIVGGEDELYRGVVSLAECNWLTDL---- 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           +  +     VK+R         +    D    + F + +  V  GQA V Y  +    R+
Sbjct: 287 SPGETHAVTVKLRYRSRAESAMLHLLSDARAELRFREPQRAVTPGQAAVCYQGE----RL 342

Query: 378 LGGGIISGSK 387
           LGGG I G++
Sbjct: 343 LGGGWIQGTE 352


>gi|254416844|ref|ZP_05030593.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176390|gb|EDX71405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microcoleus chthonoplastes PCC 7420]
          Length = 359

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/375 (39%), Positives = 210/375 (56%), Gaps = 25/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA L   GY+V+G+TL L       K KG CC+   V DA  +C
Sbjct: 7   KKVVVGLSGGVDSSVAAATLHHQGYEVVGLTLWLM------KGKGQCCSEGMV-DAAFIC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + + H++ D  E F+  ++    S Y +G TPLPC  CN+TVKF  +L+  R+ LG D
Sbjct: 60  EQLGIPHHIVDSREVFQANIVDYLVSGYESGITPLPCSQCNKTVKFGPMLAYARETLGID 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R     D   R  + R +D  +DQSYFL+  +Q+ L    FPLG+++K  
Sbjct: 120 KIATGHYARIRYDAKSD---RYQLLRAVDSNKDQSYFLYDLSQELLAASIFPLGELEKTQ 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R LA E  L  A K +SQD+C V+  G     + +  +     GDIV  NG++LG+H G
Sbjct: 177 TRQLAAEYQLKTAAKPESQDLCLVESHGSMRTFLDQYISQTT--GDIVDTNGKVLGQHQG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A  EPL+VV +D  ++RVIVG R S       +  +NW+       
Sbjct: 235 IHHYTIGQRKGLGIAAPEPLYVVAIDAGANRVIVGDRASATQPDCTVGRVNWISIH---- 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 +  V++R    PV V V   D + + + F++ +  +  GQA V Y  +     +
Sbjct: 291 PPTTPIQASVQVRYRSHPVDVTVIPLDGNRMKLIFDQPQFSITPGQAAVLYDGE----ML 346

Query: 378 LGGGIISGSKRSDAV 392
           LGGGII   +  DAV
Sbjct: 347 LGGGIIE--RNQDAV 359


>gi|22299799|ref|NP_683046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosynechococcus elongatus BP-1]
 gi|30173409|sp|Q8CWM0|MNMA_THEEB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22295983|dbj|BAC09808.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Thermosynechococcus elongatus BP-1]
          Length = 369

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/365 (40%), Positives = 206/365 (56%), Gaps = 24/365 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSSV  A LK  G+ V+G+TL L       K KG CC+ + + DA R+C+ 
Sbjct: 7   VVVGLSGGVDSSVAIASLKAQGHPVVGLTLWLM------KGKGQCCS-EGLVDAARLCEQ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + V H++ D  E F   ++    S YA G TPLPC  CNR VKF  +L+ +R+ LG D +
Sbjct: 60  LGVPHHIVDSREIFEKYIVNYLISGYANGVTPLPCSQCNRLVKFGPMLAYSREQLGIDYI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY + +     D   R  + R +D  +DQSYFL+   Q+ L  + FPLG   K   R
Sbjct: 120 ATGHYAQVKYNPTSD---RYELWRAVDRHKDQSYFLYDLPQEILAHVLFPLGQQTKAETR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            LA + GL  A K +SQD+C ++  G     + +       +G+IV + G++LG H GI 
Sbjct: 177 ALAAQYGLPTASKPESQDLCLIEAHGSMRQFLDQYLPR--QQGEIVDVYGRVLGYHQGIH 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GLG+A  EPL+VV LD+  +RVIVG R +       +  +NW+         
Sbjct: 235 HYTIGQRKGLGIAAPEPLYVVALDREHNRVIVGDRATAGRRECTVARVNWVSI----PPP 290

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            +     V+IR    PVPV +  + +   V ++F + + GV  GQA V+Y  D    R+L
Sbjct: 291 KEPMTATVQIRYRTPPVPVTIIPDANAEQVQLEFAEPQFGVTPGQAAVWYAGD----RLL 346

Query: 379 GGGII 383
           GGGII
Sbjct: 347 GGGII 351


>gi|237802710|ref|YP_002887904.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273944|emb|CAX10736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 358

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFYKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|218281120|ref|ZP_03487655.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
 gi|218217634|gb|EEC91172.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
          Length = 385

 Score =  429 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/391 (30%), Positives = 190/391 (48%), Gaps = 29/391 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+V+V +SGGVDS+V A LLK+ GYDV    ++ ++S   +   G+       C   QD 
Sbjct: 1   MKVLVGLSGGVDSAVAAYLLKKQGYDVTCCFMRNWDSFANNDIAGNPTIKDDTCPQEQDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V + +++     D+ E + + V   F S Y  G TP P + CN+ +KF       
Sbjct: 61  LDALAVANHLDLPLQRVDFIEEYWDNVFKTFLSEYEKGRTPNPDILCNKYIKFDSFFEYA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G D +ATGHY  +      +      + R  D  +DQ+YFL    + ++    FPL 
Sbjct: 121 MKQGFDKVATGHYASNA-----EENGFTYLTRAKDQNKDQTYFLCQVEKSKIAKTIFPLA 175

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251
            ++K  +R +A E+ L+ +A K DS  ICF+ +  +   +       + +GDIV +N  +
Sbjct: 176 HLEKPEIRQIAAELNLESVATKKDSTGICFIGERNFRQFLSNYLP--SKDGDIVDVNTSK 233

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307
           ++ RH G++ YTIGQR+GL +   + P FVV  D   + + V     R+ L      ++ 
Sbjct: 234 VIARHVGVLYYTIGQRKGLNIDHEKGPWFVVGKDVVKNILYVCRTDQRDLLYSDSCIVKG 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           INW+   L E       KC  K R  Q    + ++R DD  V V + ++   V  GQ  V
Sbjct: 294 INWILPSLEEIPT----KCTCKFRYRQKDQDIEIERLDDTSVLVKYPQTIASVTEGQEAV 349

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLL 397
           FY  D    + +GGG+I    +       L+
Sbjct: 350 FYDGD----KCIGGGVIEEVFKDGKNLNQLI 376


>gi|126656453|ref|ZP_01727714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. CCY0110]
 gi|126622139|gb|EAZ92846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. CCY0110]
          Length = 349

 Score =  429 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/368 (39%), Positives = 203/368 (55%), Gaps = 23/368 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA L+  GY VIG+TL L       K KG CC+   V DA  +C
Sbjct: 2   KKVVVGLSGGVDSSVAAASLQHQGYTVIGLTLWLM------KGKGQCCSEGMV-DAAFIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + V H++ D  E F   +I    S Y +G TPLPC  CNR VKF  +L+  R+ L  D
Sbjct: 55  EQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAREELNCD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R    D+   R  + R +D  +DQSYFL+  +Q  L    FPLG+  KE 
Sbjct: 115 RIATGHYARIRY---DEQMDRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E  L  A K +SQD+C ++  G     + +       EG+IV L+G++LG H G
Sbjct: 172 TRRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIK--PKEGEIVDLDGKVLGTHQG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A  EPL+VV LD   +RVIVG R +       +  +NW+       
Sbjct: 230 IHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWVSIAEPSS 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +       V++R     V V +   + + V + F++++ G+  GQA VFY  +     V
Sbjct: 290 PIT----AAVQVRYRSKAVAVTIIPIENNRVKLQFDEAQFGITPGQAAVFYNGEI----V 341

Query: 378 LGGGIISG 385
           LGGGII  
Sbjct: 342 LGGGIIET 349


>gi|237738505|ref|ZP_04568986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420385|gb|EEO35432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 357

 Score =  429 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 210/372 (56%), Gaps = 31/372 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D+  K++++ VAMSGGVDSS VA +LK+ GYD+IG+T++              C  +D  
Sbjct: 13  DEKNKNIKIAVAMSGGVDSSTVAYILKKQGYDLIGITMR-------------TCNPED-E 58

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA++VC+ + + HYV D  + F+  V+  F   Y  G+TP PC+ CN+ +KF  L+   R
Sbjct: 59  DAKKVCEDLGIPHYVLDATKEFKTKVMDYFIEEYLQGKTPNPCMVCNKHIKFGMLIDFAR 118

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             GAD +ATGHY + +  V         +    D  +DQ YFL    ++ L  L FP+GD
Sbjct: 119 SKGADFMATGHYTQLKDGV---------LSMGDDPNKDQVYFLSQINKENLKYLMFPIGD 169

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQIL 253
           ++K  VR+LA ++G+ +  K DSQ+ICFV+ GK  + +     G A  +G+IV  +G++L
Sbjct: 170 LEKPKVRELAEQLGVRVYAKKDSQEICFVEDGKLKEFLLENTKGRAGKKGNIVTTDGKVL 229

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+HNG+  YTIGQR+GLG++  +PL+V+ LD  ++ VIVG  E L    +    +N +  
Sbjct: 230 GKHNGLAFYTIGQRKGLGISQEKPLYVIELDSKNNNVIVGDNEQLFKGELIAENVNLISF 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF-EKSEVGVASGQACVFYTSD 371
              E+  ++G  C+ K RS        ++  ++G V V F E     V  GQ  VFY  +
Sbjct: 290 DRLEE--LNGVVCWAKTRSRDKLHKCQLEVLENGNVKVRFIEDKVRAVTPGQGVVFYNEE 347

Query: 372 SNEARVLGGGII 383
               +VLG G I
Sbjct: 348 ---KKVLGSGFI 356


>gi|67922387|ref|ZP_00515898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Crocosphaera watsonii WH 8501]
 gi|67855731|gb|EAM50979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Crocosphaera watsonii WH 8501]
          Length = 349

 Score =  429 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 145/366 (39%), Positives = 199/366 (54%), Gaps = 23/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDSSV AA L+  GYDVIG+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KVVVGLSGGVDSSVAAASLQHQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            + ++H++ D  + F   +I    S Y +G TPLPC  CNR VKF  +L+  + +L  D 
Sbjct: 56  QLGIAHHIVDTRDLFTENIIDYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAQAELNCDR 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D   +R  + R +D  +DQSYFL+  +Q  L    FPLG+  KE  
Sbjct: 116 IATGHYARIDY---DKITQRYQLLRAVDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E  L  A K +SQD+C ++  G     + +       EG+IV L G++LG H G+
Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMSTFLDQYIK--PKEGEIVDLEGKVLGTHQGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLG+A  EPL+VV LD   +RVIVG R         +  +NW+        
Sbjct: 231 HHYTIGQRRGLGIAAPEPLYVVKLDAVMNRVIVGNRADGGRSDCTVGRLNWVSI----PE 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                   V++R     V V +   +D  V + F + + G+  GQA VFY  +     VL
Sbjct: 287 PASPITAEVQVRYRSKAVRVTIIPLEDHRVKLQFNEPQFGITPGQAAVFYDGEI----VL 342

Query: 379 GGGIIS 384
           GGGII 
Sbjct: 343 GGGIIE 348


>gi|332043246|gb|EGI79443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lacinutrix algicola 5H-3-7-4]
          Length = 396

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 193/404 (47%), Gaps = 48/404 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V
Sbjct: 2   KKRVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +     D  E+++  ++    + Y  G TP P V CNR +KF   + +   LGAD
Sbjct: 61  AEKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALDLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +  +  DG+    +    D  +DQSYFL   +Q+QL    FP+G+++K  
Sbjct: 121 YVATGHYCR-KGIIEKDGEEVYQLLSGKDNNKDQSYFLCQLSQEQLAKALFPIGELQKPE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248
           VR++A +  L  ADK DSQ +CF+ + +  D +++       EG IV +           
Sbjct: 180 VREIAAKADLITADKKDSQGLCFIGKVRLPDFLQQQLK--PKEGVIVEIPKDNANYSNTQ 237

Query: 249 ----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDK 285
                                 +G+I+G+H G   +T GQR+GL V    EPLFV+  D 
Sbjct: 238 ESFNSKTEELKYLSRKAEYAVADGEIVGKHQGAHYFTKGQRKGLSVGGKVEPLFVIDTDV 297

Query: 286 NSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340
             + +  G       L    +++   E++W+   L      +  +   +IR  Q      
Sbjct: 298 EENVIYTGQGKGHPGLYKKALFVSNDELHWVRPDLAL-KPDETLQVLARIRYRQTLENAT 356

Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + + + G+YV+FE  +  +  GQ   +Y  D     ++G G+IS
Sbjct: 357 LHKVESGLYVEFENLQSAITEGQFVAWYLED----ELVGSGVIS 396


>gi|167895830|ref|ZP_02483232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 7894]
          Length = 339

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 116/351 (33%), Positives = 165/351 (47%), Gaps = 26/351 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V
Sbjct: 3   KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +     ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA 
Sbjct: 60  ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  
Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++A ++GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+
Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232

Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
             YT GQR+G+G+       GEP FV   D  S+ + V        L    +    ++W+
Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVG 358
                 +   DG +C  K R  Q   P       Q  D+   + F++ +  
Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWA 339


>gi|310821277|ref|YP_003953635.1| tRNA-specific 2-thiouridylase mnma [Stigmatella aurantiaca DW4/3-1]
 gi|309394349|gb|ADO71808.1| tRNA-specific 2-thiouridylase MnmA [Stigmatella aurantiaca DW4/3-1]
          Length = 348

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/364 (43%), Positives = 209/364 (57%), Gaps = 18/364 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSS  AALLK  G++VIG+TL+++ S +   + GSCC+  D+ DAR V 
Sbjct: 1   MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKAQCGSCCSPDDIDDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV + EE F++ VI PF  SY  G TP+PCV CNR VKF+ LL   R LGA  
Sbjct: 60  QKLDIPFYVANAEEIFKDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGA-Q 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      +    R ++ R +DL +DQSYFLF   Q +L D+ FP+G M K  V
Sbjct: 119 LATGHYARV-----EREGDRHVLRRAVDLAKDQSYFLFTLGQAELADVLFPVGGMTKAEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A    L  + K +S +ICFV  G Y   V+++ AG    GDI+  +G +LG H GI 
Sbjct: 174 RAVAERHALPTSQKPESMEICFVPDGDYAGFVEKV-AGPQPSGDIIDTDGHVLGTHGGIH 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGL +  GE  +V  L+  ++RV+VG   +       L + +W+      D  
Sbjct: 233 RFTVGQRRGLNLGGGEARYVQRLEPEANRVVVGTASAAGRDAFGLLQPHWVDAPPAPDQT 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           V+     V+IR     VP  V+ +  G V V  E     V  GQA V Y  D    RVLG
Sbjct: 293 VE-----VRIRHRHAGVPGRVEISTHGLVSVRLEAPARAVTPGQAAVVYAQD----RVLG 343

Query: 380 GGII 383
           GG I
Sbjct: 344 GGWI 347


>gi|85709728|ref|ZP_01040793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. NAP1]
 gi|85688438|gb|EAQ28442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. NAP1]
          Length = 390

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 184/380 (48%), Positives = 236/380 (62%), Gaps = 20/380 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL +   + R+VVAMSGGVDSSVVAAL    G +VIG+TLQLY+   A+ RKG+CCAG 
Sbjct: 21  FDLPRPASECRIVVAMSGGVDSSVVAALAADTGAEVIGITLQLYDYGAATGRKGACCAGD 80

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D + ++HYVFD+E  FR  V+  FA  Y AG TP+PC+ CN   KF+DL  
Sbjct: 81  DIADARAVSDRLGIAHYVFDHESAFREDVVEQFADEYLAGRTPVPCIRCNMGPKFTDLFR 140

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY+R       + +    + R  D  RDQSYFL+ATTQ+QL  +RFP
Sbjct: 141 MARELGADCLATGHYVRRV-----EAEGGPHLYRANDPSRDQSYFLYATTQEQLDFIRFP 195

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K  VR+LA   GL  A K DSQDICFV  G Y  +VK++     + G IVH   G
Sbjct: 196 LGGLPKTKVRELAEAAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGGVPGAIVHAATG 255

Query: 251 QILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           + LG H GII+YT+GQR+GL +    EPL+V+ LD  S  V VGP+  L V    + E N
Sbjct: 256 ETLGDHKGIIHYTVGQRKGLEIGGQPEPLYVISLDAESREVRVGPKRMLGVESAEVIETN 315

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYV--DFEKSEVGVASGQACV 366
            +G      A+ DG +   K+RS   PVPV ++ +  DG  V   FE+ E GVA GQA V
Sbjct: 316 RIG------AIPDGAQLTAKVRSLAKPVPVTLEGDLGDGATVTLHFEQPEFGVAPGQAAV 369

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y  D    RV+GGG I+ +
Sbjct: 370 IYADD----RVIGGGWINAT 385


>gi|295099800|emb|CBK88889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cylindroides T2-87]
          Length = 386

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 184/381 (48%), Gaps = 29/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+V+V +SGGVDS+V A LLK  GYDV    ++ ++S       G+       C   QD 
Sbjct: 1   MKVLVGLSGGVDSAVAAYLLKEQGYDVTCCFMRNWDSYANGDIAGNPTIQDDTCPQEQDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V + +N+     D+ + + + V   F S Y  G TP P + CN+ +KF       
Sbjct: 61  QDAKAVAEHLNLPLQRVDFIKEYWDYVFKTFLSEYEKGRTPNPDILCNKYIKFDAFFDYA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G D++ATGHY  +             + R  D  +DQ+YFL   +   L    FPLG
Sbjct: 121 MKQGFDMVATGHYCSNMTE-----GSFTYLTRAADTNKDQTYFLCQVSPAALHKTLFPLG 175

Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251
            + K  VR++A ++ L+ +A K DS  ICF+ +  +   +       + +G+IV ++ G+
Sbjct: 176 KLIKPEVREIAAKLNLESVATKKDSTGICFIGERNFRQFLSNYLP--SQDGNIVDVDTGK 233

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPR---ESLEVHRIYLRE 307
           ++GRH G++ YTIGQR+GL +   + P FV+  D   + + V      E L      ++ 
Sbjct: 234 VVGRHVGVLYYTIGQRKGLNIDHEKGPWFVIGKDVQKNVLFVCHHTHKEWLYSDSCLVKG 293

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
           INW+     +D      KC  K R  Q    ++++  DD    V + +    V  GQ  V
Sbjct: 294 INWI----VKDKNEIPEKCTCKFRYRQPDQDIYLKVLDDTTALVSYPQKIASVTIGQEAV 349

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY       + +GGG+I    
Sbjct: 350 FYDG----FKCIGGGVIEEVY 366


>gi|163789149|ref|ZP_02183592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriales bacterium ALC-1]
 gi|159875562|gb|EDP69623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriales bacterium ALC-1]
          Length = 395

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/403 (30%), Positives = 197/403 (48%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +     D   +++  ++    + Y  G TP P V CNR +KF   + +  +LGAD 
Sbjct: 61  DKLGIPFQTVDLSVQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMDIALELGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    +  DGK    +    D  +DQSYFL   +Q QL    FP+G++ K  V
Sbjct: 121 VATGHYCRKST-IEKDGKVIHQLLSGADNNKDQSYFLCQLSQAQLAKALFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A+  GL  A+K DSQ +CF+ + +  + +++       EG IV +            
Sbjct: 180 REIAKAQGLITAEKKDSQGLCFIGKVRLPEFLQQQLK--PKEGVIVEVDSAFEIFSQSIP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286
                                +G+++G+H G   +T GQR+GLGV    EPLFV+  D  
Sbjct: 238 DFKSKENELEFFSKKPEYAITDGKVVGKHQGAHYFTKGQRKGLGVGGTIEPLFVIDTDVK 297

Query: 287 SSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L  + ++++  E++W+ + L   A  D  +   +IR  Q      +
Sbjct: 298 ENIIFTGQGKNHPGLLRNVLFVKNDELHWVREDLAL-AEGDTMQVMARIRYRQALENATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +   G+YV+FE  +  +  GQ   +Y +D     +LG G+IS
Sbjct: 357 HKVASGLYVEFENQQSAITEGQFVAWYLND----ELLGSGVIS 395


>gi|85860332|ref|YP_462534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
 gi|123517346|sp|Q2LWA6|MNMA1_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|85723423|gb|ABC78366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
          Length = 372

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 200/367 (54%), Gaps = 19/367 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A+SGGVDSSV A LLK +GY+V GVT+ L    +  + K  CC  + + DAR V
Sbjct: 20  KKRVLLAISGGVDSSVAALLLKEEGYEVAGVTMCL--GVREEENKVRCCGREAIEDARGV 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + + HYV DY       VI  F   Y  G TP PC+DCNR +KF  LL   R +G D
Sbjct: 78  CEILGIPHYVLDYAPLLETCVIDKFVREYRLGRTPNPCIDCNRYLKFGHLLDSARTMGFD 137

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY +      +  + R I+ +  DL +DQ+YFL+      L  + FPL D  K+ 
Sbjct: 138 YLATGHYAKI-----ERKESRWILKKAKDLVKDQTYFLYPIPVAALEHILFPLADRTKDE 192

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR++AR+  L IA+K +SQD+CFV Q  Y D ++         G IV  +G++LG H+G 
Sbjct: 193 VREIARQALLPIAEKPESQDLCFVTQDSYRDFLQEQG-CPVHPGPIVDRSGRVLGEHSGT 251

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YTIGQR GLG++   PL+VV +D   + VIV  +E +    +   E+NWL     ++A
Sbjct: 252 VFYTIGQRHGLGISSPFPLYVVAIDVAGNSVIVSGKEDVYAQGLVAGEMNWLTPERPQEA 311

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                    +IR  +      +    D + V F + +  V  GQA V Y  D     VLG
Sbjct: 312 -------EARIRHRKRTCSCRIVPEGDRIRVYFAEDQDAVTPGQAVVLYQED----EVLG 360

Query: 380 GGIISGS 386
           GG+I  +
Sbjct: 361 GGVIEEA 367


>gi|87306814|ref|ZP_01088960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blastopirellula marina DSM 3645]
 gi|87290187|gb|EAQ82075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blastopirellula marina DSM 3645]
          Length = 363

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/376 (37%), Positives = 202/376 (53%), Gaps = 31/376 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----------------RKASKRKGSCCA 69
           MSGGVDSSV A LL  +G++VIGV ++                           K  CC+
Sbjct: 1   MSGGVDSSVAAHLLLEEGHEVIGVFMRHGEQSPVASCQIDGQSALPILNDRPDHKQGCCS 60

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D  DARRV D + +  Y  + +  F   +I  F   Y AG TP PCV CN  +KF  L
Sbjct: 61  ASDAADARRVADNLQIPFYALNLQREF-GQIIDYFVDEYVAGRTPNPCVMCNNWIKFGKL 119

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                 +GA+ +ATGHY R    + D       + R +D  +DQ+Y LF   ++ L  + 
Sbjct: 120 FDYADSVGAEYVATGHYAR---LITDQTDALPRLVRGVDSGKDQTYVLFGIGREYLRRML 176

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            P+G  +K  +R+LA ++G+ +ADK DSQ+ICFV  GK+ + +K   A +   G+IV   
Sbjct: 177 LPVGQFEKSRIRELAGQIGMRVADKKDSQEICFVTSGKHDEFIKSRRADLQTAGEIVTTA 236

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G+++G H+GI  YTIGQR+GLGVA+GEP FVV +D  +++V++G +E L    +  R+ N
Sbjct: 237 GEVVGTHDGIEKYTIGQRKGLGVALGEPRFVVRIDAETNQVVIGEKEELGRTELTARDCN 296

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           WL      D      +C  +IR + D  P  V+   DG + V F++   GVA GQA V Y
Sbjct: 297 WLV-----DLPAGPLRCRAQIRYNSDDAPATVEHLPDGRIAVTFDEPRRGVAPGQAVVCY 351

Query: 369 TSDSNEARVLGGGIIS 384
             D    +VLGGG I 
Sbjct: 352 DGD----QVLGGGWIE 363


>gi|255506865|ref|ZP_05382504.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D(s)2923]
 gi|289525326|emb|CBJ14802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis Sweden2]
 gi|296434876|gb|ADH17054.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/150]
 gi|296438596|gb|ADH20749.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/11023]
          Length = 358

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 187/371 (50%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++VAMSGGVDSSVVA LLK+ G  +V+G+ ++ +  +  +   G C A +D  D  R+
Sbjct: 3   KTIIVAMSGGVDSSVVAYLLKKQGECNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ +Y   + + ++  V   F   YA G TP P V CNR +KF  L    R+L  D
Sbjct: 60  AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R     G DG     + R +D  +DQSYFL  T +  L ++ FPLG M K  
Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR +A+E GL  A K DS  ICF+ +  +   +++  A     GDI+  +  Q++GRH G
Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314
              YTIGQRRGL +  M +P +V+  +   + V +        L    +  +E+NW    
Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                + +   C  K+R         V   +DG V V F+     V  GQ   FY  D  
Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343

Query: 374 EARVLGGGIIS 384
               LGGG+I 
Sbjct: 344 ---CLGGGVIE 351


>gi|290969182|ref|ZP_06560707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780688|gb|EFD93291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 362

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 138/366 (37%), Positives = 196/366 (53%), Gaps = 14/366 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARRV 79
           V VAMSGGVDSSV A LL+R G DVIG+TL+L+ +    + ++   +CC+   V DA+ V
Sbjct: 5   VAVAMSGGVDSSVTAGLLQRRGLDVIGITLRLWEAPPTCEVTENIHACCSLSAVEDAKAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HY  D+ + F   VI  F  +Y  G+TP PC+ CN+ +KF  L    +Q GAD
Sbjct: 65  ADVLGIPHYTLDFRDVFSQDVITYFIQAYKDGKTPNPCIACNKWIKFGLLWQRAQQFGAD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R    V D  ++   + R  D  +DQSY L+   Q  L  + FP+ ++ K  
Sbjct: 125 FLATGHYAR---IVYDARRKVYSLLRGADRRKDQSYVLYQLQQDLLPHILFPMAELTKTE 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R LA+E  L + +K +SQDICF+    Y   ++       + G+ V   G++LG H GI
Sbjct: 182 TRRLAKEWHLPVFNKPESQDICFIPDNDYKKFLRSRAPQHFIPGNFVDKEGRVLGTHAGI 241

Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             YT+GQRR       G P +V  LD   +RVIVG    L    + ++E+ W+     E+
Sbjct: 242 PCYTVGQRRGLHLGGPGGPYYVTALDVPHNRVIVGGAADLFRTAVEVQEVTWV-----EE 296

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F    KIR +    P  V  +D   + V+F   +  V +GQA V Y + +   RV
Sbjct: 297 TPETDFSALGKIRYAAKEAPCRVHVSDGARMRVEFVTPQRAVTAGQALVLYDA-ATGERV 355

Query: 378 LGGGII 383
           LGGGII
Sbjct: 356 LGGGII 361


>gi|313206777|ref|YP_004045954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Riemerella anatipestifer DSM 15868]
 gi|312446093|gb|ADQ82448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Riemerella anatipestifer DSM 15868]
 gi|315023849|gb|EFT36851.1| tRNA-specific 2-thiouridylase MnmA [Riemerella anatipestifer RA-YM]
 gi|325335784|gb|ADZ12058.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Riemerella anatipestifer RA-GD]
          Length = 395

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 47/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VVV +SGGVDSSV A LL++ G++VIG+ ++ +N    +     C   +D  DA  V 
Sbjct: 1   MKVVVGLSGGVDSSVAAYLLQQQGHEVIGLFMRNWNDASVTLED-ECPWIEDSNDALLVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E ++  ++      Y  G TP P V CNR VKF   +     LGAD 
Sbjct: 60  QKLGIPFQVIDMSELYKERIVDYMFEEYEKGRTPNPDVLCNREVKFDVFMKTALSLGADK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++G     +    D  +DQSYFL    Q+QL    FP+G++ K  V
Sbjct: 120 VATGHYARLSTTEDENGTTTYHLLAGKDHNKDQSYFLCQLNQEQLSKALFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A+E+GL  A+K DSQ +CF+ +      +++       EG+I+ +            
Sbjct: 180 REIAKEIGLVTANKKDSQGLCFIGKVSLPQFLQQQLK--PKEGEIIEIFKDFKAYHQPRP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286
                                +G+ +G+H G   +TIGQ +GLG+    E  F++  D  
Sbjct: 238 SFSNKYEELKYLSKKITYQKSDGKSIGKHQGAQFFTIGQSKGLGIGGHKESCFIISRDVK 297

Query: 287 SSRVIVGPR---ESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + + VG       L    I +   +I+W+ + L E    +  +   +IR  Q      +
Sbjct: 298 ENLIFVGEGKNFPGLFQKVIKIEPNDIHWVREDL-ELKNNETMEVMARIRYRQPLEKATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + +DG+Y++FE  +  VA GQ   +Y  D     ++G G+IS
Sbjct: 357 HKYEDGLYIEFENPQSAVAEGQFAAWYLED----ELVGSGVIS 395


>gi|42526204|ref|NP_971302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema denticola ATCC 35405]
 gi|81570437|sp|Q73PV6|MNMA_TREDE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41816316|gb|AAS11183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema denticola ATCC 35405]
          Length = 366

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 136/358 (37%), Positives = 184/358 (51%), Gaps = 16/358 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+V +SGGVDS+V A LL   GYDV GVT+QL        ++       D+ DA++V 
Sbjct: 1   MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKE----QTDDIEDAKKVA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V+D  E F+  +I  F   Y  G TP PC  CN  +KF   L    + G D 
Sbjct: 57  DKLGIKHIVYDMRETFKTEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +       +G  R ++ +  D ++DQSYFL   TQ+QL    FPLGD  KE V
Sbjct: 117 IATGHYAKIEK-TEIEGDERFLLRQAEDAQKDQSYFLALLTQEQLSRSIFPLGDFTKEKV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A + DSQDICFV    Y  V+  + AG   EG  +   G  +GRH G+ 
Sbjct: 176 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL +AMG P++VV  D  ++ V VG  E L    +    +N +     +  +
Sbjct: 236 YYTIGQRRGLAIAMGYPVYVVKKDAKTNTVTVGKDEELFAESLIASRVNII----LKKTI 291

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-------GVYVDFEKSEVGVASGQACVFYTSD 371
                  VK R  Q      +    +          V+F + E  VA GQA VFYT D
Sbjct: 292 DKEIDIEVKTRYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYTGD 349


>gi|332187411|ref|ZP_08389149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. S17]
 gi|332012572|gb|EGI54639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. S17]
          Length = 365

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 185/379 (48%), Positives = 239/379 (63%), Gaps = 22/379 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             L  +P+  R+VVAMSGGVDSSVVAAL    G + IGVTLQLY+  +A  R G+CCAG+
Sbjct: 4   FQLGGDPRAKRIVVAMSGGVDSSVVAALAHATGAETIGVTLQLYDHGEAVGRAGACCAGR 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR VCD + ++HYVFD+E+ FR  V+  FA  Y AG TP+PCV CN   KF+DLL 
Sbjct: 64  DIRDARAVCDRLGIAHYVFDHEDSFRTQVVDRFADEYLAGRTPIPCVQCNMGPKFTDLLK 123

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R       +G     + R  D  RDQSYFLFATTQ+QL  LRFP
Sbjct: 124 LARDLGADCLATGHYVRRV-----EGTHGAELHRGADPARDQSYFLFATTQEQLNFLRFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LG + K  VR++A E+ L +A K DSQDICFV  G Y  +VK++       GDI+ L+G 
Sbjct: 179 LGALPKSRVREIAAELSLSVAAKPDSQDICFVPDGDYAGLVKKLRPEADTRGDIIDLSGA 238

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            LG H G+I+YT+GQRRGL +    EPL+VV L+ ++ RV+VGPR +L V    L  +N 
Sbjct: 239 KLGEHRGLIHYTVGQRRGLEIGGSPEPLYVVRLEPDTKRVVVGPRTALAVEAARLTGMNI 298

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           LG        +DG   F K+RS   PVP  +  +     + F+  E GV+ GQA V Y  
Sbjct: 299 LG-------PLDG-PLFAKVRSMAKPVPARMVGD----RLVFDAPEYGVSPGQAAVLYDG 346

Query: 371 DSNEARVLGGGIISGSKRS 389
           D    RVLGGG I+ ++ +
Sbjct: 347 D----RVLGGGWIAETEAA 361


>gi|168700409|ref|ZP_02732686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemmata obscuriglobus UQM 2246]
          Length = 357

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 195/370 (52%), Gaps = 26/370 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKAS-KRKGSCCAGQDVYDA 76
           RVV+AMSGGVDSS  A LLK+ G++VIG+ ++     ++        K  CC+  D  DA
Sbjct: 3   RVVLAMSGGVDSSASAVLLKKQGHEVIGLFMRTGTHGHDQPDERRDNKKGCCSAIDAGDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRV D +++  Y  D+E  F N +I  FA  Y  G TP PCV CN  +KF  L +  ++L
Sbjct: 63  RRVADKLDIPFYALDFESEF-NRIIDYFADEYVRGRTPNPCVVCNNWLKFGQLWTFGQKL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + R     +G+    + + +D ++DQSY L    ++ L  L FP+G   
Sbjct: 122 GADFIATGHYAQVR-----NGE----LHKGVDADKDQSYVLHGIKREVLPHLLFPVGGYT 172

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           K  +R  ARE  L  +A+K DS +ICFV  G + DVV+    G A  G I   +G +LG 
Sbjct: 173 KPQIRQFAREASLVGVAEKPDSVEICFVPSGNHTDVVRARRPGAATAGVIAERDGTVLGD 232

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H+GI  YTIGQR+GL +  G+  FV+ L   ++ V+VG    L    +    +NWL    
Sbjct: 233 HDGIDRYTIGQRKGLNIGGGKKRFVLELLAETNTVVVGDESDLLSSGLVASGMNWL---- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   +   C  KIR     VP  V    D G  V F+  +  V  GQA   Y      
Sbjct: 289 -IDPPTEPLTCVAKIRYRHAGVPATVTALPDGGAEVVFDAPQPAVTPGQALALYDG---- 343

Query: 375 ARVLGGGIIS 384
            RVLGGG I 
Sbjct: 344 TRVLGGGWIE 353


>gi|269303316|gb|ACZ33416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 361

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 182/369 (49%), Gaps = 27/369 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VAMSGGVDSSVVA L K+   Y VIG+ ++ +         G C + +D  D  RVC 
Sbjct: 5   VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNWEEDSEG---GLCSSTKDYEDVERVCL 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ +Y   + + +R  V   F   Y+ G TP P + CNR +KF  L    ++LG D L
Sbjct: 62  QLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDYL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    + +       + R  D ++DQSYFL  T +  L ++ FPLG+M K  VR
Sbjct: 122 ATGHYCRLNTELQE-----TQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVR 176

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260
            +A +  L  A+K DS  ICF+ +  + + +++        G+I+  +  +I+G+H G  
Sbjct: 177 AIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPN--KTGNIIDWDTKEIVGQHQGAH 234

Query: 261 NYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316
            YTIGQRRGL +   E P +VV  +   + + +        L +  +  RE+NW      
Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWFT---- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 G  C  K+R         +   +DD V V F +    V  GQ   FY  D+   
Sbjct: 291 --PPKSGCHCSAKVRYRSPDEACTIDYSSDDEVKVRFSQPVKAVTPGQTIAFYQGDT--- 345

Query: 376 RVLGGGIIS 384
             LG G+I 
Sbjct: 346 -CLGSGVID 353


>gi|124003360|ref|ZP_01688210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microscilla marina ATCC 23134]
 gi|123991458|gb|EAY30889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microscilla marina ATCC 23134]
          Length = 386

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 210/386 (54%), Gaps = 19/386 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+V+G+T++ ++  S   SK++  CC+   + DA
Sbjct: 3   KKGRVLVAMSGGIDSSLAAVLLHEQGYEVVGITMKTWDYASSGGSKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   H + D    F + VI  F + Y  G TP PCV CN  +K+  LL    +L
Sbjct: 63  RNIAVDLGFPHLILDIRNEFGDYVIDHFTNEYLDGRTPNPCVLCNTHIKWDALLRRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R     +   R ++ + +D  +DQSY L+  +QQ L     PLG + 
Sbjct: 123 DCEHIATGHYANIR-----EENGRYVISKGIDEGKDQSYALWGVSQQSLSRTILPLGQLY 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++A E G  ++ +KS+S +ICFV    Y   +KR    +  +   GD +  +G +
Sbjct: 178 KSQIREMAIERGFVELVNKSESYEICFVPDNDYRGFLKRRVPELEEKVDGGDFILEDGTV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A+G P++V  +DKN++RV++G  + LE + + + ++    
Sbjct: 238 VGKHKGYPFYTIGQRKGLGIALGYPVYVTGIDKNNNRVVLGTVKDLEKNGMIVNQL---T 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              + D      +   K+R + +  P  ++  +D  + V F +    +A GQA VFY  D
Sbjct: 295 LQKYADMKGKPLETVTKVRYNHEGAPARIEQVSDHEIKVWFHEEVSAIAPGQAAVFYEGD 354

Query: 372 SNEARVLGGGIISGSKRSDAVEESLL 397
                 +GGG I  S +    EE ++
Sbjct: 355 DM----IGGGWIKSSFKWQENEEGII 376


>gi|253699615|ref|YP_003020804.1| tRNA-specific 2-thiouridylase MnmA [Geobacter sp. M21]
 gi|251774465|gb|ACT17046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
          Length = 355

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 154/375 (41%), Positives = 210/375 (56%), Gaps = 25/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72
           +  N K  +V VAMSGGVDSS VAALLK  G +VIG+ ++L+    +  + KG       
Sbjct: 1   MSANYKGRKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V + + +  ++   EE F   ++  F + Y  GETP PCV CNR VKF  LL  
Sbjct: 54  --DAQIVAEYLGIEFHLVHLEEEFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LGA+ LATGHY+R+      D      + +   L +DQSYFL+  TQ+QL  + FPL
Sbjct: 112 ALELGAEYLATGHYVRTSR----DDGGSYHLLKAAFLAKDQSYFLYTLTQKQLSHVVFPL 167

Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           GDM  K+ VR LA + GL +A KSDSQ+ICFV    Y   +++        GDIVH++G 
Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGA 227

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LGRH+G   YTIGQRRGLGVA  EPL+VV +D    RV+VG    L    +   ++NW+
Sbjct: 228 VLGRHSGTHRYTIGQRRGLGVAWKEPLYVVSIDALEGRVVVGEVGRLFAAGLVACDLNWV 287

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTS 370
                     + F+   KIR  Q P+   V+   +G+  V F + +  V  GQ+ VFY  
Sbjct: 288 VPVE-----GETFETTCKIRYRQQPIACRVKLLGEGLGEVFFAEPQKSVTPGQSVVFYRD 342

Query: 371 DSNEARVLGGGIISG 385
           D     +LGGG I G
Sbjct: 343 D----ELLGGGRIVG 353


>gi|62184976|ref|YP_219761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila abortus S26/3]
 gi|73920121|sp|Q5L6D1|MNMA_CHLAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|62148043|emb|CAH63795.1| tRNA-methyltransferase [Chlamydophila abortus S26/3]
          Length = 362

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 184/381 (48%), Gaps = 28/381 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  VVVAMSGGVDSSVVA LLK+   Y V+G+ ++ +    ++   G C   +D  D  R
Sbjct: 2   NKTVVVAMSGGVDSSVVAYLLKKYTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVER 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + +++ +Y   +   +R  V   F   Y+ G TP P V CNR +KF  L     +LG 
Sbjct: 59  VAEQLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R      D   +R  + R  D  +DQSYFL  T  + L ++ FPLGDM K 
Sbjct: 119 DFLATGHYCRL-----DVKSQRVGLLRGKDPHKDQSYFLCGTHPESLKNVLFPLGDMTKR 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257
            VR +A + GL  A K DS  ICF+ +  +   +++    +  EG+I+  +  +I+G H 
Sbjct: 174 EVRSIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNV--EGEIIDYDSQKIVGNHE 231

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           G   YTIGQRRGL +   E P +VV  D   + V +        L    +  +E+NW   
Sbjct: 232 GAHYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWFV- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                +     +C  K+R         +      D V V F      +  GQ   FY  +
Sbjct: 291 -----SPESITRCSAKVRYRSPDEECEILHTGTQDTVRVRFTSPVKAITPGQTIAFYDGE 345

Query: 372 SNEARVLGGGIISGSKRSDAV 392
               R LGGGII  +    +V
Sbjct: 346 ----RCLGGGIIEVAMTPHSV 362


>gi|86133287|ref|ZP_01051869.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Polaribacter sp. MED152]
 gi|85820150|gb|EAQ41297.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Polaribacter sp. MED152]
          Length = 395

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 122/403 (30%), Positives = 197/403 (48%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVTAHLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D  E+++  ++    + Y  G TP P V CNR +KF   + +  +LGAD 
Sbjct: 61  EKLGIPFQVVDLSEQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIALKLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    + DD K    +    D  +DQSYFL   +QQQL    FP+G++ K  V
Sbjct: 121 VATGHYCRKAEEIIDD-KPVYKLLAGKDNNKDQSYFLCQLSQQQLAKALFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A+E  L  A+K DSQ +CF+ + +  + +++       +GDIV +            
Sbjct: 180 REIAKEADLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKKGDIVTIPSDFSDYIKEQP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKN 286
                                +G+++G H G   +T GQR+GL V    E L+V+  D  
Sbjct: 238 KFESKEEELKYLSTKFTYNKTDGKVVGIHQGAHYFTKGQRKGLNVGGTKEALYVIETDVE 297

Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
            + +  G       L  + +++   EI+W+ + L      +  +   +IR  Q      +
Sbjct: 298 ENVIYTGEGKQHPGLYRNVLFVANEEIHWIREDL-TLKPSETMQVEARIRYRQVLEQATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + D G+YV+FE  +  +  GQ   +Y ++     +LG G+IS
Sbjct: 357 YKVDSGLYVEFENKQSAIQEGQFVAWYKNE----ELLGSGVIS 395


>gi|257063219|ref|YP_003142891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia heliotrinireducens DSM 20476]
 gi|256790872|gb|ACV21542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia heliotrinireducens DSM 20476]
          Length = 353

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 138/363 (38%), Positives = 196/363 (53%), Gaps = 15/363 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL R GY+V+G T+ LY+  +            D+ DAR V 
Sbjct: 3   QRVLVGMSGGVDSSVTAYLLLRQGYEVVGATMNLYDPGRLGVPDVRDGESNDLEDARSVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + ++H+V D+   F N V+ PFA +YA G TP PC+ CNR +KF  +L   R+LG D 
Sbjct: 63  NRLGIAHHVLDFGCEFENNVVRPFAQAYADGLTPNPCIACNRHLKFGLMLKAARELGCDG 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    +      R ++ + +D  +DQ+Y L+  TQ QL     PLG+  K+ V
Sbjct: 123 IATGHYARIAQRLD----GRFVLMKGLDDAKDQAYVLYHMTQDQLAHTVLPLGEYTKQQV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E G   A K +SQDICFV  G Y   ++R    +   GD++  NG +LG+H G I
Sbjct: 179 RAIAAEQGFANARKHESQDICFVPDGDYVGFLERYAGLVPEPGDVLDENGAVLGQHRGAI 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQR+G+G+A  + L+V   D  ++ + +GP ++L      +   NW+         
Sbjct: 239 RYTLGQRKGIGIASTQALYVTAKDMAANTITMGPADALLADGCTVGNWNWILPD------ 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                  VK    Q P    V   +DG V  DF++     A GQ+ V Y  D+    VLG
Sbjct: 293 EGPVHAMVKTHYRQKPHGAMVVPQEDGTVRFDFDEPSRLAAPGQSAVAYIGDT----VLG 348

Query: 380 GGI 382
           GGI
Sbjct: 349 GGI 351


>gi|254423006|ref|ZP_05036724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. PCC 7335]
 gi|196190495|gb|EDX85459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. PCC 7335]
          Length = 365

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/377 (38%), Positives = 206/377 (54%), Gaps = 26/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSSV AA L   G++VIG+TL L       K KG CC+ + + DA ++CD
Sbjct: 3   KIVVGLSGGVDSSVAAATLHNQGHEVIGLTLWLM------KGKGQCCS-EGMTDAAKLCD 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +++ V D  E F   ++      Y+ G TPLPC  CN TVKF  +L     ++GAD 
Sbjct: 56  HLGIAYNVVDSREVFEKYIVNYLVEGYSRGVTPLPCSQCNSTVKFGPMLDYAVNEMGADY 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    +      R  + R +D  +DQSYFL+  +Q  L   +FPLGD  K   
Sbjct: 116 IATGHYARITHNL---ETGRYELRRAVDRNKDQSYFLYDLSQTHLAASQFPLGDTTKSET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A  +GL  A+K +SQD+C V+  G     + +  A     GDIV  +GQ+LG+H GI
Sbjct: 173 RKIAASLGLHTAEKPESQDLCLVEQHGSMKTFLDKFLA--PKPGDIVTTSGQVLGQHEGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLG+A   PL+VV LD   ++V+VG R+S+  H   +  +NW+        
Sbjct: 231 HHYTIGQRRGLGIAAPNPLYVVSLDVGRNQVVVGERDSVTSHGCIVHRVNWVSIA----P 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-----DDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                   V+IR     V   V         D V + F++ + GV  GQA V+Y    ++
Sbjct: 287 PTSPISVEVQIRYRSQAVQATVIPTCRVDGTDRVRIIFDEPQFGVTPGQAAVWYD---SK 343

Query: 375 ARVLGGGIISGSKRSDA 391
            RVLGGGII  +   D 
Sbjct: 344 GRVLGGGIIEPTCSDDT 360


>gi|88812884|ref|ZP_01128128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrococcus mobilis Nb-231]
 gi|88789806|gb|EAR20929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrococcus mobilis Nb-231]
          Length = 374

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 181/382 (47%), Gaps = 27/382 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +V +SGGVDS+V A LL   G+ + G+ ++ +           C A QD+  A++VC
Sbjct: 5   TRYIVGLSGGVDSAVAALLLLEQGHAIQGLFMRNWEDDD---TATYCSAEQDLAYAKQVC 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  +V ++   +R  V       Y  G TP P + CN+ +KF   ++  ++LG D 
Sbjct: 62  AQLDIPLHVANFAHEYRAEVFDHCLREYRRGHTPNPDILCNQRIKFHAFINYAQRLGTDH 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R+    G        + +  D ++DQSYFL+   Q+QL    FPLG+  K +V
Sbjct: 122 IATGHYARNIERHGT-----YHLFKAKDADKDQSYFLYTLGQRQLARATFPLGEHAKSTV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA + G D  D+ DS  ICF+ +  +   + R        G I    G ++GRH G+ 
Sbjct: 177 RALAEQAGFDNFDRKDSTGICFIGERAFRPFLSRYIQ--PTPGPIETPEGVVVGRHQGVS 234

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            YT+GQR+GL +       G+P +VV  D  ++R+IV        L    +   E+ W+ 
Sbjct: 235 FYTLGQRQGLEIGGRAGRSGKPWYVVGKDTPANRLIVAQGHDHPLLMSVGLEATELCWVA 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                       +CF K R  Q      V+    D     F++ +  V  GQ+ VFY  +
Sbjct: 295 GR----PPSTPLRCFAKTRYRQPSQSCVVEAITADCARTVFDQPQRAVVPGQSVVFYCDE 350

Query: 372 SNEARVLGGGIISGSKRSDAVE 393
                 +GGG+I  +      E
Sbjct: 351 ----ECIGGGVIQQTFPWHTHE 368


>gi|206901317|ref|YP_002250407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740420|gb|ACI19478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus thermophilum H-6-12]
          Length = 345

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 205/370 (55%), Gaps = 27/370 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V V MSGGVDSS  A LLK++GY+VIG+T+ +  S               + DA ++
Sbjct: 2   PIKVAVGMSGGVDSSTTAYLLKKEGYEVIGLTMNIAYSDS-------------IKDAEKI 48

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +N+ H+  D  + F   +I  F  SY +G TP PC  CNR +KF  LL   ++LGA+
Sbjct: 49  AKYLNIPHFYVDLRKEFEEQIIKYFIDSYKSGYTPNPCTFCNRIIKFGLLLKKAQELGAE 108

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY+R    V D+ K+  ++ R  DL++DQSYFL   TQ+Q+    FPLGD+ K  
Sbjct: 109 YLATGHYVRK---VWDEEKKVFLLKRAKDLKKDQSYFLAYLTQEQIEKSLFPLGDLTKNE 165

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA E+GL ++DK +SQDICF+    Y   + R    +  +G I+  +G  +G H+G+
Sbjct: 166 VRKLAEEIGLFVSDKEESQDICFLPDRDYRKFLSRYL--VEKKGKIITEDGVEVGYHDGV 223

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            ++TIGQRRGL VA+G+P++V  +      V+V  RE +    +Y + +N+      E  
Sbjct: 224 FSFTIGQRRGLRVALGKPVYVKKIIPEEGIVVVADREKIFSREVYAKNVNYPSGMPRE-- 281

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +    IR + +P P  ++  ++  +Y+ FE+ +  +  GQ  V Y  D     VL
Sbjct: 282 --KELEVKAMIRYNMEPQPALLKILSEKEIYLTFEEPQWAITPGQILVCYKDD----YVL 335

Query: 379 GGGIISGSKR 388
            GG+I   + 
Sbjct: 336 CGGVIEEKEN 345


>gi|114320607|ref|YP_742290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311715|sp|Q0A8N7|MNMA_ALHEH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114227001|gb|ABI56800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 366

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VVV +SGGVDS+V A  L   G+ V G+ ++ +           C A +D+ +A+ 
Sbjct: 3   KTDKVVVGLSGGVDSAVAAMRLLEAGHHVEGLFMKNWEDDD---TLTHCAAEEDLAEAQA 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  +  ++  R+R  V       Y AG TP P + CN+ +KF   L     LGA
Sbjct: 60  VADHLGIRLHRANFAARYREQVFEVCLREYRAGRTPNPDILCNQRIKFRAFLDHALSLGA 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY      VG+ G  R  + R  D  +DQSYFL+   Q QL    FPL ++ K 
Sbjct: 120 SKVATGHYAG----VGEQG-GRFTLLRGEDPHKDQSYFLYTLGQAQLRHSLFPLSELPKP 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL    + DS  ICF+ +  +   + R        G +    GQ++G H G
Sbjct: 175 EVRRQAAAAGLPNHARRDSTGICFIGERDFRAFLSRYIQRS--PGPMETPEGQVVGEHQG 232

Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQRRGLG+           +V   D   + +IV        L    +   E++W
Sbjct: 233 LAFYTLGQRRGLGLGGLPDHDEGAWYVADKDMARNALIVVQGHAHPRLLSTALVADELSW 292

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFY 368
           +             +C VK R  Q   P  ++   +   V V F+  +  V  GQ+ VFY
Sbjct: 293 VAGA----PPTLPLRCTVKSRYRQQDQPCALEAGPSPTSVVVRFDTPQRAVTPGQSVVFY 348

Query: 369 TSDSNEARVLGGGIISG 385
                    LGGGII  
Sbjct: 349 QGRV----CLGGGIIQT 361


>gi|325281886|ref|YP_004254428.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
 gi|324313695|gb|ADY34248.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
          Length = 364

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 207/375 (55%), Gaps = 19/375 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           +  RV++AMSGG+DS+V A LL   GY+++GVT + ++  SR   +++  CC+   +++A
Sbjct: 2   EKKRVLMAMSGGIDSTVAAMLLLEQGYELVGVTYRTFDNISRGCMEKEKGCCSVDSLFEA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R+   +   H++ D  + F++ VI  F   Y  G TP PCV CN T+K+  L+    ++
Sbjct: 62  KRMAQELGFEHHILDIRQEFKDTVITNFIGEYLQGRTPNPCVICNSTIKWGKLIETANEM 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D +ATGHY R     G     RR + +  DL +DQ+YFL+  TQ+ L    FPLG++ 
Sbjct: 122 RCDYIATGHYARIGHQDG-----RRYLRKGADLSKDQTYFLWTLTQENLSRTLFPLGELT 176

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K  VR +A + G + ++ K +SQ+ICF+    Y   +             G+ V  +G+ 
Sbjct: 177 KPEVRQIAFDHGYEKLSKKGESQEICFIPGNDYRTFLAEQVENYTEKYGPGNFVDTSGKR 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H G  NYTIGQR+GLG+A+G+P+FV+ +    + V++G +E L+    + +EIN + 
Sbjct: 237 LGEHKGYPNYTIGQRKGLGIALGQPMFVIAIHPEDNTVVLGTKEELQGKSFFAKEINLMK 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                  + DG +   KIR   +     +   D+ + V F ++   +  GQ+ VFY  + 
Sbjct: 297 YA----KIPDGLEVTAKIRYRNEGKKASLYPEDNRLRVVFHETMDSITPGQSAVFYEGED 352

Query: 373 NEARVLGGGIISGSK 387
               V+GGG+I G +
Sbjct: 353 ----VVGGGVIEGKR 363


>gi|228473347|ref|ZP_04058101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275249|gb|EEK14047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 397

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/404 (30%), Positives = 195/404 (48%), Gaps = 50/404 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQKQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALMVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D    ++  ++      Y  G TP P V CNR +KF+  L +   LGAD 
Sbjct: 61  EKLGIPFQTVDMSVPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLDLALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  DGK    +    D  +DQSYFL   +Q+QL    FP+GD++K  V
Sbjct: 121 VATGHYCR-KEEIEVDGKPIYRLLAGKDTNKDQSYFLCQLSQEQLSRALFPIGDLQKNEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+E+GL  A+K DSQ +CFV + +  + +++       EGDI+ +            
Sbjct: 180 RAIAKELGLVTAEKKDSQGLCFVGKVRLPEFLQQQL--SPKEGDIIQIPSTWAGYHNKQI 237

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284
                                  +G+I+G+H G   +TIGQR+GL      EPLFV+  D
Sbjct: 238 LRCFECYEDELKFLAEKYHYTPQDGKIVGKHEGAHFFTIGQRKGLHVGGTAEPLFVIDTD 297

Query: 285 KNSSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + + VG       L    +++   +I+W+   L   ++       V+IR  Q     
Sbjct: 298 TEKNIIYVGEGNTHPGLLRSALFVKKEDIHWVRPDLAL-SLGQRMGFQVRIRYRQPLQKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +   + G+Y+ F+  +  + SGQ   +Y  +     ++G G I
Sbjct: 357 HLYLTNSGLYIHFDTPQSAITSGQFASWYLDE----ELIGSGEI 396


>gi|329942704|ref|ZP_08291483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci Cal10]
 gi|313847883|emb|CBY16878.1| tRNA-methyltransferase [Chlamydophila psittaci RD1]
 gi|325507227|gb|ADZ18865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
 gi|328814964|gb|EGF84953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci Cal10]
 gi|328914545|gb|AEB55378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
          Length = 362

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 184/375 (49%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  VVVAMSGGVDSSVVA LLK+   Y V+G+ ++ +    ++   G C   +D  D  R
Sbjct: 2   NKTVVVAMSGGVDSSVVAYLLKKMTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVER 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + +++ +Y   +   +R  V   F   Y+ G TP P V CNR +KF  L     +LG 
Sbjct: 59  VAEQLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R  +      ++   + R  D  +DQSYFL  T Q+ L ++ FPLGDM K 
Sbjct: 119 DFLATGHYCRLDVR-----RQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257
            VR +A + GL  A K DS  ICF+ +  +   +++    +  EGDI+  +  +I+G H 
Sbjct: 174 EVRAIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNL--EGDIMDYDSQKIVGSHE 231

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           G   YTIGQRRGL +   E P +VV  D   + V +        L    +  +E+NW   
Sbjct: 232 GAHYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWFV- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                +     +C  K+R   +     +      D V V F      +  GQ   FY  +
Sbjct: 291 -----SPESITRCSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYDGE 345

Query: 372 SNEARVLGGGIISGS 386
               R LGGG+I  S
Sbjct: 346 ----RCLGGGVIEVS 356


>gi|297181285|gb|ADI17477.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase
           domain-protein [uncultured beta proteobacterium
           HF0130_04F21]
          Length = 385

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/391 (31%), Positives = 188/391 (48%), Gaps = 32/391 (8%)

Query: 8   RLN-SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           +LN  L++ K      +V+ MSGGVDSSV A LLK  G+ V+G+ ++ +           
Sbjct: 13  KLNIKLEIIKMITKKHIVIGMSGGVDSSVAAWLLKSQGHKVVGIFMKNW---DDDDTDTY 69

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C + QD  DA    + I +      +   +R  V   F   Y+ G TP P V CN  +KF
Sbjct: 70  CTSKQDFLDAAAASEIIGIEFDAVSFSNEYRKKVFNDFLHEYSLGRTPNPDVFCNSEIKF 129

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L  ++ LGAD++ATGHY ++   +         + +  D  +DQSYFL   TQ+QL 
Sbjct: 130 KSFLHHSQNLGADLIATGHYAKTIKNI----NGEFELHKGKDQNKDQSYFLHRLTQKQLR 185

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
              FPLG   K+ VR LA+E+GL  A+K DS  ICF+ +  +   + +      + G + 
Sbjct: 186 YTTFPLGQYYKKDVRKLAQEIGLPNANKRDSTGICFIGERPFKVFLSKYLK--TMSGPVC 243

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGPRE 296
             +G+I+G+H+G+  YTIGQR+GLG+              P FVV  +K  +R+IV    
Sbjct: 244 TTDGKIIGKHDGLSFYTIGQRKGLGIGGIKKSNDFEKTAAPWFVVAKEKKDNRLIVAQGH 303

Query: 297 S---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE 353
               L    +     +W+     +   ++     VKIR  Q      +    +  ++ F+
Sbjct: 304 DNPFLMSTSLSAINPSWVKGKAPKFEEME-----VKIRYRQKTFSCILSVRSEKFFLKFD 358

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             + GV  GQ+ V Y  +      LGGGII 
Sbjct: 359 SPQRGVTPGQSAVLYKGE----ECLGGGIIE 385


>gi|28210754|ref|NP_781698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium tetani E88]
 gi|75542643|sp|Q896F5|MNMA1_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|28203192|gb|AAO35635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium tetani E88]
          Length = 362

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/366 (36%), Positives = 202/366 (55%), Gaps = 18/366 (4%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVCDTIN 84
            MSGGVDSSV A LLK  GYDVIG+T++++     +   GS    +D+   A+ VCD + 
Sbjct: 12  GMSGGVDSSVTAYLLKEQGYDVIGMTMKVF---PGNYHDGSKEKIEDIMKSAKEVCDFLE 68

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +     D  E F   V  PF   Y  G TP PCV CN+ +KF   L+   +LGAD +ATG
Sbjct: 69  IPFVEVDLIEEFNKKVATPFMQDYIEGRTPNPCVYCNKHIKFDAFLNKAIELGADYIATG 128

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY         +   R ++ R  D  +DQ+Y L+   Q QL  +  P GD  KE +R++A
Sbjct: 129 HYANII-----EKDGRTLIYRAEDENKDQTYMLYNLKQHQLKHILMPCGDYNKEQIREIA 183

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
           +++GL I +K DS++ICF+    +   ++        EG+ V   G++LGRH GIINYTI
Sbjct: 184 KKIGLKIHNKKDSEEICFIPDDDHGRYIRENCKKKIQEGNFVDEKGKVLGRHKGIINYTI 243

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQR+GLG+A+G+P +V+ +    ++V++G  E +  + +  +++N++      D + +  
Sbjct: 244 GQRKGLGIALGKPAYVIDIIPEKNQVVLGEEEKIFNNILIAKDVNFI----PFDELKEKI 299

Query: 325 KCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           K   KIR S       ++  + + V V F+K +  +  GQ+ VFY     E  +LGGGII
Sbjct: 300 KLEAKIRYSAKGEIAEIEPLENNRVKVTFDKKQRAITKGQSVVFY----IENLLLGGGII 355

Query: 384 SGSKRS 389
              + S
Sbjct: 356 ESVESS 361


>gi|313896558|ref|ZP_07830107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974743|gb|EFR40209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 365

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 206/375 (54%), Gaps = 16/375 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQ 71
           +++     RVVVAMSGGVDSS+ AALL   GYDV+GVT++L N  +    +   SCC+  
Sbjct: 1   MERIMGKERVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLS 60

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V DARRV D + + HYV D+   F+ +VI  F   Y  G TP PC+ CNR +KF  LL 
Sbjct: 61  SVDDARRVADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLH 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + +LGA  +ATGHY R      D       + +  D+++DQSY L+   Q+ L  +  P
Sbjct: 121 KSAELGASHVATGHYARI-----DFDGGMYRLRKGKDVDKDQSYVLYHLNQETLAHVLLP 175

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           LGD  K + R +A E  L +A K +SQ+ICFV +  Y   +K    G ++ GDIV   G 
Sbjct: 176 LGDFDKGTTRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGN 235

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG H+GI  YTIGQRRGLG+A  +PL+V  LD   + V+VG  E +    +   +++W 
Sbjct: 236 VLGHHDGISFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWT 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +++ +      KIR  +      +   + + + V F + +  V  GQ+ VFY  
Sbjct: 296 ----MWESLDEVCMAHAKIRYGKREAEARIMPLDGNRLRVRFTEPQRAVTPGQSIVFYEG 351

Query: 371 DSNEARVLGGGIISG 385
           D     VLGGG+I  
Sbjct: 352 DV----VLGGGVIDA 362


>gi|325473540|gb|EGC76733.1| tRNA-specific 2-thiouridylase mnmA [Treponema denticola F0402]
          Length = 383

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/358 (36%), Positives = 187/358 (52%), Gaps = 16/358 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+V +SGGVDS+V A LL   GYDV GVT+QL        ++       D+ DA++V 
Sbjct: 18  MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKE----QTDDIEDAKKVA 73

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H V+D  E F+  +I  F   Y  G TP PC  CN  +KF   L    + G D 
Sbjct: 74  AKLGIKHIVYDMRETFKAEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 133

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +       +G+ R ++ +  D+++DQSYFL   TQ+QL    FPLGD  K+ V
Sbjct: 134 IATGHYAKIEK-TEIEGEERFLLRQAEDVQKDQSYFLALLTQEQLSHSIFPLGDFTKKKV 192

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A + DSQDICFV    Y  V+  + AG   EG  +   G  +GRH G+ 
Sbjct: 193 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 252

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL +AMG P++VV  D  ++ V VG  E L    +   ++N +     +  +
Sbjct: 253 YYTIGQRRGLAIAMGYPVYVVKKDAKANTVTVGKDEELFAESLIASDVNIIS----KKTI 308

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-------GVYVDFEKSEVGVASGQACVFYTSD 371
            +     +K R  Q      +    +          V+F + E  VA GQA VFY+ D
Sbjct: 309 DEEIDIEIKTRYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYSGD 366


>gi|320528367|ref|ZP_08029529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Solobacterium moorei F0204]
 gi|320131281|gb|EFW23849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Solobacterium moorei F0204]
          Length = 382

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 183/382 (47%), Gaps = 29/382 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            +V+V +SGGVDS+V A LL++ GYDV    ++ ++S       G+       C    D 
Sbjct: 2   KKVLVGLSGGVDSAVAAYLLQQQGYDVTCAFMRNWDSVANEDFSGNPTLYDPVCPQEADY 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  V   + +     D+ + + + V   F   Y  G TP P + CNR +KF   +   
Sbjct: 62  KDAADVAAKLGLELLRIDFIKEYWDDVFQTFIDEYKLGRTPNPDILCNRYIKFDSFMKFA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G D++ATGHY R    +G++G    ++C+ +D  +DQSYFL    ++ L  + FPLG
Sbjct: 122 KEKGFDIVATGHYAR----LGEEGN-HHVLCKAVDHNKDQSYFLTEIRREVLEHVLFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           +++K  VR +A E+GL IA K DS  ICF+ + ++ + +          GDI+ +   Q 
Sbjct: 177 EIEKPEVRRIAEELGLSIAKKKDSTGICFIGERRFREFLGNYLP--MKSGDIIDVTTKQK 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309
           +G H G++ YTIGQR+GL +    P FVV  D   + + V        L      +  +N
Sbjct: 235 VGIHQGVMYYTIGQRKGLDIGGIGPFFVVGKDVYKNELYVVDANHQDLLYATSCLVTGVN 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           WL D           +C  K R  Q    V +  N+DG +   F +    +  GQ  VFY
Sbjct: 295 WLADRTL------PLQCHAKFRYRQADNDVELVLNEDGTLTALFPEGIRSITPGQEAVFY 348

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D   A    GG I    +  
Sbjct: 349 DGDVMFA----GGKIEKVYKDG 366


>gi|294793679|ref|ZP_06758816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 3_1_44]
 gi|294455249|gb|EFG23621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 3_1_44]
          Length = 363

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 135/364 (37%), Positives = 201/364 (55%), Gaps = 18/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 15  IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 70  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V     G    G+IV  +G++LG+HNG+ NY
Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY       ++LGG 
Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 357

Query: 382 IISG 385
           +I  
Sbjct: 358 VIDR 361


>gi|241116858|ref|XP_002401642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
 gi|215493186|gb|EEC02827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
          Length = 343

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/354 (48%), Positives = 227/354 (64%), Gaps = 13/354 (3%)

Query: 36  VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
           VAA+L   G++VIG+TLQLY+   A  +K +CCAGQD+YDA+ V + + + HYV  YE +
Sbjct: 2   VAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANKLGIPHYVLGYESK 61

Query: 96  FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
           F+ +VI  F  SY  GETPLPCV CN++VKF DL+   R+LGAD LATGHY+R     GD
Sbjct: 62  FKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGADKLATGHYVRK--INGD 119

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           +G     +   +D  +DQSYFLF TT++QL  L FPLG + K+  R LA + GL++ADK 
Sbjct: 120 NGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKDETRKLASKFGLEVADKP 176

Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275
           DSQDICFV  G Y  V+ +I  G +  G IVH+NG  LG H+GIINYTIGQRRGLG+A  
Sbjct: 177 DSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSGIINYTIGQRRGLGIAYN 236

Query: 276 EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335
           +PL+VV +D   + V VGP  +L V    ++++NWL D   E    +  +  VKIRS++ 
Sbjct: 237 KPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ETKDNEKLEVAVKIRSTRP 293

Query: 336 PVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           P    + +  DD + + F   E  VA GQACV Y  +    RVLGGG I+   R
Sbjct: 294 PRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RVLGGGWITRDMR 343


>gi|149185324|ref|ZP_01863641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. SD-21]
 gi|148831435|gb|EDL49869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. SD-21]
          Length = 383

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 182/394 (46%), Positives = 237/394 (60%), Gaps = 21/394 (5%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           ++  A      DL+K   + R+VVAMSGGVDSSVVAAL  + G +VIG+TLQLY+   A+
Sbjct: 6   LLEPALAAGLFDLEKPASESRIVVAMSGGVDSSVVAALAAKSGAEVIGITLQLYDYGAAT 65

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAG D+ DAR V D + ++HYV D+E  FR  V+  FA  Y AG TP+PC+ CN
Sbjct: 66  GRKGACCAGDDIADARAVADRLGIAHYVSDHESAFREEVVETFADEYLAGRTPVPCIRCN 125

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              KF+DL ++ R+LGAD LATGHY++  +     G     + R  D  RDQSYFL+ATT
Sbjct: 126 MGPKFTDLFAMARELGADCLATGHYVQRLM-----GPAGPELHRANDPARDQSYFLYATT 180

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           + QL  LRFPLG + K  VR+LA   GL  A K DSQDICFV  G Y  +VK++    A 
Sbjct: 181 EDQLNFLRFPLGGLPKAQVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKKMRPEGAA 240

Query: 242 EGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLE 299
            G IVH   G+ LG H G+++YT+GQRRGL +    EPL+VV +D + ++V VGP+  L 
Sbjct: 241 PGAIVHAATGEELGTHKGVVHYTVGQRRGLEIGGQPEPLYVVGIDADQAQVKVGPKRMLA 300

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGV--YVDFEKSE 356
           V   +L E N +G        +       K+RS   PVP+ +     +G    + FE  E
Sbjct: 301 VSAAHLVETNRIG-------PLPDVPLTAKVRSLAKPVPITLDGPLGEGAATTLRFETPE 353

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
            GVA GQA V Y  D    RVLGGG I  + R D
Sbjct: 354 FGVAPGQAAVIYAGD----RVLGGGWIDSTTRCD 383


>gi|158338655|ref|YP_001519832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acaryochloris marina MBIC11017]
 gi|205810972|sp|B0CE39|MNMA_ACAM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158308896|gb|ABW30513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acaryochloris marina MBIC11017]
          Length = 355

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 141/372 (37%), Positives = 202/372 (54%), Gaps = 27/372 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA LK  GY+VIG+TL L         KG CC+   + DA ++C
Sbjct: 2   KKVVVGLSGGVDSSVAAASLKEKGYEVIGLTLWLMQ------GKGQCCS-DGLVDAAQLC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
           + +++ H+V D  + F N +I      Y  G TPLPC  CN+TVKF  +L+  R +L  D
Sbjct: 55  EDLDIPHHVVDSRDLFSNNIIDYLVEGYQQGITPLPCSQCNKTVKFGPMLNYARHELDTD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       + ++R  + R +D  +DQSYFL+   Q  L    FPLGD  K  
Sbjct: 115 TIATGHYARIAYS---EKEKRYQLLRAVDRNKDQSYFLYDLDQDLLSGTVFPLGDHTKTE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A ++ L  A+K +SQD+C ++  G     + +        G+IV   G ILG H G
Sbjct: 172 TRRMATQLDLHTAEKPESQDLCLIEAHGSMQTFLDQYIE--THPGEIVDQEGNILGHHQG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + ++TIGQRRG+GVA   PL+VV LD   +RVIVG RE+       ++ +NW+     ++
Sbjct: 230 VHHFTIGQRRGIGVAAPHPLYVVDLDPGKNRVIVGDRETALKTECMVKRVNWVSIAPPQN 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-----DGVYVDFEKSEVGVASGQACVFYTSDSN 373
            +       V++R    P  V +   D       V + FE  + G+A GQA V+Y  +  
Sbjct: 290 PI----HAEVQVRYRSKPTGVTIIPLDAEAPGGRVKLVFEDPQFGIAPGQAAVWYDQEI- 344

Query: 374 EARVLGGGIISG 385
              +LGGGII  
Sbjct: 345 ---LLGGGIIEA 353


>gi|205814682|sp|Q11UP4|MNMA_CYTH3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 133/378 (35%), Positives = 206/378 (54%), Gaps = 18/378 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSSV A +L   GY+VIG+T++ ++      SK++  CC+   + DA
Sbjct: 3   KKGRVLVAMSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +  ++   HY+ D  E F + VI  F   Y  G TP PCV CN  +K+  LL    ++
Sbjct: 63  RNIAVSLGFPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKM 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D +ATGHY + R         R ++ + +D  +DQSY L+  +QQ L    FPLG + 
Sbjct: 123 DCDFIATGHYAQVRSE-----NNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLH 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A E G  D+ +KS+S +ICFV    Y   +KR N G+  E   G+ V  +G +
Sbjct: 178 KTDIRAMAAERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+ +G P+FV  + K ++RV++G  E L  + +++ ++  + 
Sbjct: 238 VGKHEGYPFYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQL--IM 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                   +       K+R + D     +++  D + V F +    +A GQA VFY  + 
Sbjct: 296 SKYENLKGIQKQSIT-KVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND 354

Query: 373 NEARVLGGGIISGSKRSD 390
               V+GGG I  S + D
Sbjct: 355 ----VIGGGWIKSSFKQD 368


>gi|294791818|ref|ZP_06756966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 6_1_27]
 gi|294457048|gb|EFG25410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 6_1_27]
          Length = 363

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 201/363 (55%), Gaps = 18/363 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 15  IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 70  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V     G    G+IV  +G++LG+HNG+ NY
Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY       ++LGG 
Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 357

Query: 382 IIS 384
           +I 
Sbjct: 358 VID 360


>gi|320529055|ref|ZP_08030147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas artemidis F0399]
 gi|320138685|gb|EFW30575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas artemidis F0399]
          Length = 361

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 203/367 (55%), Gaps = 16/367 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RVVVAMSGGVDSS+ AALL   GYDV+GVT++L N  +    +   SCC+   V DARRV
Sbjct: 5   RVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLSSVDDARRV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + HYV D+   F+ +VI  F   Y  G TP PC+ CNR +KF  LL  + +LGA 
Sbjct: 65  ADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLHKSAELGAS 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D       + +  D+++DQSY L+   Q+ L  +  PLGD  K +
Sbjct: 125 HVATGHYARI-----DFDGGMYRLRKGKDVDKDQSYVLYHLNQETLAHVLLPLGDFDKGT 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R +A E  L +A K +SQ+ICFV +  Y   +K    G ++ GDIV   G +LG H+GI
Sbjct: 180 TRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGNVLGHHDGI 239

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQRRGLG+A  +PL+V  LD   + V+VG  E +    +   +++W       ++
Sbjct: 240 SFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWT----MWES 295

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           + +      KIR  +      +   + + + V F + +  V  GQ+ VFY  D     VL
Sbjct: 296 LDEVRMAHAKIRYGKREAEARIMPLDGNRLRVRFTEPQRAVTPGQSIVFYEGDV----VL 351

Query: 379 GGGIISG 385
           GGG+I  
Sbjct: 352 GGGVIDA 358


>gi|157736746|ref|YP_001489429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
 gi|205810440|sp|A8ES36|MNMA2_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|157698600|gb|ABV66760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
          Length = 367

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 32/381 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ +           C    +  DA+
Sbjct: 2   NKNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEYGIKGS---QCPNRIEFEDAK 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V   I +     D+ + +R+ V   F      G TP P + CN+ +KF+  L+  + +G
Sbjct: 59  KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY +   Y     K   ++  P D  +DQSYFL A + +QL    FPLGD+ K
Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR++AR   L ++DK DS  ICF+   K+ + + +     A+ GDI+  NG+++G+H 
Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231

Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           G++ YT+GQR+G+G+             +P FV   D  ++ + +        L    + 
Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQ 363
              ++W+     E+A   G K   ++R  Q       V+ N++ V V+F+  +  V  GQ
Sbjct: 292 ASHMHWV----LEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVEFDNPQRAVTLGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y+ D      LGGG IS
Sbjct: 348 SLVLYSGD----YCLGGGFIS 364


>gi|300868100|ref|ZP_07112736.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506]
 gi|300333898|emb|CBN57914.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506]
          Length = 352

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/367 (40%), Positives = 210/367 (57%), Gaps = 23/367 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSS  AA+L   GY+V+G+TL L       K KG CC+   V DA ++C+
Sbjct: 3   KIVVGLSGGVDSSTAAAILHHQGYEVVGLTLWLM------KGKGQCCSEGMV-DAAQICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H + D  + F+ +++      Y AG TPLPC  CNRTVKF  +L   R+ LG + 
Sbjct: 56  QLGIPHEIVDSRDLFQASIVDYLVEGYGAGITPLPCSQCNRTVKFGPMLRYAREKLGIEK 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +       D   R  + R +D  +DQSYFL+  TQ+ L    FPLGD+ K   
Sbjct: 116 IATGHYAQISYDGSVD---RYQLRRAVDSTKDQSYFLYDLTQEMLAGSVFPLGDIAKTET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E GL  ADK++SQD+C V+  G     + +  A   L+GDIV  +G++LG+H+GI
Sbjct: 173 RRIAAEFGLKTADKAESQDLCLVESNGSMRAFLDKYIA--PLKGDIVDKDGRVLGQHDGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLG+A  EPL+V+ LD   +RVIVG R S   +   +  +NW+        
Sbjct: 231 QHYTIGQRKGLGIAWAEPLYVIGLDVARNRVIVGDRASAAQNECIVNRVNWVSIA----E 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                +  V+IR    PVPV V    D  V + F++ + G+  GQ  V+Y  D     +L
Sbjct: 287 PGAPIRAEVQIRYRSHPVPVSVIPLPDARVKLIFDEPQFGITPGQGAVWYDGDI----LL 342

Query: 379 GGGIISG 385
           GGGII  
Sbjct: 343 GGGIIES 349


>gi|119486285|ref|ZP_01620344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lyngbya sp. PCC 8106]
 gi|119456498|gb|EAW37628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lyngbya sp. PCC 8106]
          Length = 352

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 145/371 (39%), Positives = 206/371 (55%), Gaps = 26/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  AA+L    Y+V+G+TL L       K KG CC+   V DA  +C
Sbjct: 2   KKVVVGLSGGVDSSAAAAILHHQDYEVVGLTLWLM------KGKGQCCSEGMV-DAAFIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + V H++ D  E F+  ++      Y+AG TPLPC  CN+TVKF  +L   ++ LG D
Sbjct: 55  EQLGVPHHIVDSRELFQTHIVDYLVEGYSAGITPLPCSQCNKTVKFGPMLRHAKEELGID 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R R    D+   R  + R +D  +DQSYFL+  TQ  L  + FPLG++ K  
Sbjct: 115 LIATGHYARIRY---DEQNNRYQLLRAVDKSKDQSYFLYDLTQDLLAGVVFPLGEVLKTE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A +  L  ADK +SQD+C V+  G     + +   G    GDIV  NG++LG+H G
Sbjct: 172 TRRIAAQYNLKTADKPESQDLCLVEANGSMQAFLDKYITG--KTGDIVDENGKVLGQHEG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQR+GLG+A   PL+V+ +D   + VIVG RE+       ++ +NW+       
Sbjct: 230 IHHYTIGQRKGLGIAAPNPLYVIGIDAGRNLVIVGDRENATQTECIIKRVNWVSIA---- 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 +  V+IR    P PV V       D+ V + F++   G+  GQA V+Y  +   
Sbjct: 286 PPTSPIRAEVQIRYRTKPQPVTVVPLNSAEDEQVKLIFDEPIFGITPGQAAVWYDGEI-- 343

Query: 375 ARVLGGGIISG 385
             VLGGGII  
Sbjct: 344 --VLGGGIICS 352


>gi|118595168|ref|ZP_01552515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophilales bacterium HTCC2181]
 gi|118440946|gb|EAV47573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophilales bacterium HTCC2181]
          Length = 369

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 183/374 (48%), Gaps = 28/374 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV +SGGVDS+V A LLK  GYDV  + ++ +      +    C + QD+ DA  V + 
Sbjct: 6   IVVGLSGGVDSAVTAWLLKDQGYDVTALFMKNWEDDDEDE---YCSSKQDLLDAIAVAEK 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V   V ++ + ++  V   F      G TP P + CN  +KF   L+    LGAD +A
Sbjct: 63  IGVDIEVVNFAKEYKEKVFSLFIDGLKTGITPNPDILCNSEIKFDAFLNHALALGADKIA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +     G        + +  D  +DQSYFL    Q QL    FPLG + K+ VR+
Sbjct: 123 TGHYAKVMERDG-----LFYLLKGDDGSKDQSYFLHRLNQDQLSKSVFPLGGLLKKDVRE 177

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIIN 261
           +AR+  L I D+ DS  ICF+ +  + + +          G IV  + G++LG H+G+  
Sbjct: 178 IARKNSLHIHDRKDSTGICFIGERPFAEFIGGYINKD--PGSIVSADGGEVLGTHDGLNF 235

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           YTIGQR+GL +       G+P FV+  D   ++++VG       L    +  +E++W+G+
Sbjct: 236 YTIGQRQGLKIGGVQKGNGKPWFVISKDFKKNQLVVGQGHDHPLLFNDGLIAKEMHWIGE 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDS 372
            L  +  V       K R  Q   P  +   +D    V F + +  V  GQ+ V Y S+ 
Sbjct: 296 KLPRENWV----YAAKTRYRQPDAPCEIDDINDVSATVLFGQKQWAVTPGQSIVIYESNV 351

Query: 373 NEARVLGGGIISGS 386
                LGGG I  +
Sbjct: 352 ----CLGGGFIEQA 361


>gi|282896191|ref|ZP_06304214.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Raphidiopsis brookii D9]
 gi|281198880|gb|EFA73758.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Raphidiopsis brookii D9]
          Length = 350

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 205/367 (55%), Gaps = 23/367 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV AA+L   GYDVIG+TL L       K KG CC+   V DA  +C
Sbjct: 3   KKVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCSEGMV-DAATIC 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             +++ H + D  + F+  ++    S Y+AG TPLPC  CNRTVKF  +L   + +L +D
Sbjct: 56  QQLDIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLQYAKDKLQSD 115

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      D    R  + R  D  +DQSYFL+  +Q+ L    FPLG++ K  
Sbjct: 116 TIATGHYARIAY---DHRTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKND 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A E GL  ADK +SQD+C V+  G     + +        GDIV  +G++LG+H+G
Sbjct: 173 TRKIASEYGLKTADKPESQDLCLVESNGSMRAFLDKYL--SPKPGDIVDSDGKVLGKHDG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YTIGQR+GLG+A  EPL+V+ LD  ++ V+VG R         +  +NW+       
Sbjct: 231 VHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWVSMVEPRG 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            +    +  V+IR    PV   +   + D V + F++ +  +  GQA V+Y  D    +V
Sbjct: 291 TI----RGEVQIRYRSQPVLATIIPGEKDCVQMVFDEPQFSITPGQAAVWYEGD----KV 342

Query: 378 LGGGIIS 384
           LGGGII 
Sbjct: 343 LGGGIIK 349


>gi|296282975|ref|ZP_06860973.1| tRNA-specific 2-thiouridylase MnmA [Citromicrobium bathyomarinum
           JL354]
          Length = 384

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 185/385 (48%), Positives = 236/385 (61%), Gaps = 21/385 (5%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           N  DL +   + R+VVAMSGGVDSSVVAAL  + G DV+G+TLQLY+   A+ RKG+CCA
Sbjct: 15  NLFDLPRPASECRIVVAMSGGVDSSVVAALAAKTGADVVGITLQLYDYGAATGRKGACCA 74

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D+ DAR V D + ++HYVFD+E  FR +V+  FA  Y AG TP+PC+ CN   KF+DL
Sbjct: 75  GDDIADARAVADRLGIAHYVFDHESAFRESVVEQFADDYLAGRTPVPCIRCNMGPKFTDL 134

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L++ R+L AD LATGHY+R  +     G     + R  D  RDQSYFLFATTQ QL  LR
Sbjct: 135 LTMARELDADCLATGHYVRRVM-----GAGGSELHRAEDAGRDQSYFLFATTQPQLDFLR 189

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-L 248
           FPLG M K  VR LA E GL  A K DSQDICFV  G Y  +VK++    A  G IVH  
Sbjct: 190 FPLGGMPKSQVRALAEEAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGATPGAIVHAR 249

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            G+ LG H G++++T+GQRRGL +    EPL+VV LD NS+ V VGP+  L      L +
Sbjct: 250 TGETLGEHAGVVHFTVGQRRGLEIGGQPEPLYVVELDANSAEVRVGPKAMLATASAQLVD 309

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDG--VYVDFEKSEVGVASGQA 364
            N +G        +       K+RS   PVPV ++ +  +G  V + FE  E GVA GQA
Sbjct: 310 TNRIG-------PLPDLPLTAKVRSLAKPVPVTLEGSLGEGSPVTITFETPEYGVAPGQA 362

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
            V Y  D    R +GGG I  ++ +
Sbjct: 363 AVIYAGD----RAVGGGWIDSTRPA 383


>gi|15618353|ref|NP_224638.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila pneumoniae
           CWL029]
 gi|15835971|ref|NP_300495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae J138]
 gi|16752601|ref|NP_444864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae AR39]
 gi|33241787|ref|NP_876728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae TW-183]
 gi|6647887|sp|Q9Z8A5|MNMA_CHLPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4376720|gb|AAD18582.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189243|gb|AAF38171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae AR39]
 gi|8978810|dbj|BAA98646.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236296|gb|AAP98385.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
          Length = 361

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 181/372 (48%), Gaps = 27/372 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              V+VAMSGGVDSSVVA L K+   Y VIG+ ++ +         G C + +D  D  R
Sbjct: 2   QQTVIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNWEEDSEG---GLCSSTKDYEDVER 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  +++ +Y   + + +R  V   F   Y+ G TP P + CNR +KF  L    ++LG 
Sbjct: 59  VCLQLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R    + +       + R  D ++DQSYFL  T +  L ++ FPLG+M K 
Sbjct: 119 DYLATGHYCRLNTELQE-----TQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257
            VR +A +  L  A+K DS  ICF+ +  + + +++        G+++  +  +I+G+H 
Sbjct: 174 EVRAIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPN--KTGNVIDWDTKEIVGQHQ 231

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           G   YTIGQRRGL +   E P +VV  +   + + +        L +  +  RE+NW   
Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWFT- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                    G  C  K+R         +   + D V V F +    V  GQ   FY  D+
Sbjct: 291 -----PPKSGCHCSAKVRYRSPDEACTIDYSSGDEVKVRFSQPVKAVTPGQTIAFYQGDT 345

Query: 373 NEARVLGGGIIS 384
                LG G+I 
Sbjct: 346 ----CLGSGVID 353


>gi|262066104|ref|ZP_06025716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380199|gb|EFE87717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 362

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 202/376 (53%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D N K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSNKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNG 250
           +GD++K  +R+LA+++G+ +  K DSQ+ICFV  GK  + +     G A   G+IV  NG
Sbjct: 172 VGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAQKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  DK+++ +IVG  E L    +    +N 
Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELTATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        +++N D   V F +     +  GQ  VFY 
Sbjct: 292 FSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           +D N   V+ GG I  
Sbjct: 350 NDGN---VIAGGFIES 362


>gi|328955218|ref|YP_004372551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coriobacterium glomerans PW2]
 gi|328455542|gb|AEB06736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coriobacterium glomerans PW2]
          Length = 380

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 142/380 (37%), Positives = 194/380 (51%), Gaps = 16/380 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDAR 77
           +   V+VAMSGGVDSSV A LL   GY  IG T+ LY+        +G C    DV DAR
Sbjct: 3   RKQSVLVAMSGGVDSSVAAHLLLERGYTCIGATMSLYDETTMGRDPEGICGCADDVADAR 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VC  + + H VFD+++ F   VI  F   Y +G TP PC DCNR +KF  LL    ++G
Sbjct: 63  AVCARLGIEHRVFDFKDLFERRVIDRFVEQYLSGRTPNPCADCNRALKFGALLDRALEIG 122

Query: 138 ADVLATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            D +ATGHY R       +   G+  R++    D+ +DQSY L++  Q++L  +  PLG+
Sbjct: 123 CDFIATGHYARIETREDSEEGTGEGARLLRCATDISKDQSYMLYSLGQERLRRVLLPLGE 182

Query: 195 MKKE-SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           + K   VR +ARE G   A K DSQ ICF+    + D ++R        GDI+   G +L
Sbjct: 183 LIKSRDVRRIAREQGFPNARKKDSQGICFIADRDFADFIERRVGAALPAGDILDGTGAVL 242

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           GRH G I YTIGQR+GLGVA G PLFV  LD   + V +G +  L    +      W   
Sbjct: 243 GRHRGAIRYTIGQRKGLGVAAGHPLFVTALDARCNTVTLGEQRELRADALIAEGWIWTMP 302

Query: 314 GLFED-----AVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366
               +         G     + R  Q      + R   DD + + F++++  +A GQA V
Sbjct: 303 AEEMEHRLAREREQGLHVLARTRYHQRAQAARMSRLGRDDLMRIVFDEAQYAIAPGQAVV 362

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y  D     VLGGG +  +
Sbjct: 363 VYDDDI----VLGGGTVRST 378


>gi|310780562|ref|YP_003968894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
 gi|309749885|gb|ADO84546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
          Length = 376

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 138/376 (36%), Positives = 208/376 (55%), Gaps = 22/376 (5%)

Query: 17  NPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQ 71
           +P++ +  V V MSGGVDSS VA +LK+ GY+VIG+T++ +   +         +CC+  
Sbjct: 15  SPENNKYTVAVGMSGGVDSSTVAYMLKKQGYNVIGITMKHWSGMDELSEDSNSKTCCSLD 74

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+YDA+RVCD +++ HYV + +E F+  V+  F   Y  G TP PC+ CNR +K   LL 
Sbjct: 75  DIYDAKRVCDDLDIPHYVINLKEPFKEKVVDYFIEEYEKGRTPNPCMVCNRYIKLGKLLE 134

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              ++GAD +ATGHY + +     +G     +    D ++DQ YFL    ++ L  L FP
Sbjct: 135 YGIKMGADFVATGHYAKIK-----NGN----LYMGDDPKKDQVYFLSQVKRENLKYLMFP 185

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNG 250
           +GD++K  VR +A  +G+ +  K DSQ++CF++ GK  + +    +  +  EGDIV  +G
Sbjct: 186 VGDLEKPQVRKIAEYLGVRVYAKRDSQEVCFIEDGKLKEFLVDMTDGRVEKEGDIVTKDG 245

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++LG+H G   YTIGQR+GLG+    PL+V+ LD   +RVIVG  E L  + ++   IN 
Sbjct: 246 KVLGKHKGFAFYTIGQRKGLGIQHETPLYVLKLDSKKNRVIVGGNEDLFKNELFADSINV 305

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF-EKSEVGVASGQACVFY 368
           L     ED  +DG +C  K RS        V+   D  + V F +     V  GQ  V Y
Sbjct: 306 LSFDKIED--IDGIECQAKTRSRDILHLCKVEVIKDNLIKVKFLDNKVRAVTPGQGLVLY 363

Query: 369 TSDSNEARVLGGGIIS 384
             D    +V+    I 
Sbjct: 364 DFD---GKVIASAFIK 376


>gi|328907390|gb|EGG27156.1| tRNA-specific 2-thiouridylase MnmA [Propionibacterium sp. P08]
          Length = 366

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/381 (38%), Positives = 202/381 (53%), Gaps = 21/381 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
           M+V+ AMSGG+DS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR 
Sbjct: 1   MKVLAAMSGGIDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY ++++  G        + R +D  +DQSY L    Q QL    FPLG+  K  
Sbjct: 121 AVATGHYAQAKVIDG-----VTKLYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTD 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +ADK DS DICF+  G     +       + +G+I   +G ++GRHNG 
Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGRHNGY 233

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L V+ I      W     
Sbjct: 234 HRFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWCSGE- 292

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                 D +   V++R+  DPVP  V     GV V+ E    GVA GQA VFY  D    
Sbjct: 293 ----PADTWHGQVQVRAHGDPVPATVSTVPSGVSVELEDPLRGVAPGQAAVFYDGD---- 344

Query: 376 RVLGGGIISGSKRSDAVEESL 396
            V+G   I G+ R+    E  
Sbjct: 345 LVVGSATICGTDRAGTTAEQA 365


>gi|315635922|ref|ZP_07891184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315479901|gb|EFU70572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 367

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 198/381 (51%), Gaps = 32/381 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ +           C    +  DA+
Sbjct: 2   NKNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEYGIKGS---QCPNRIEFEDAK 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V   I +     D+ + +R+ V   F      G TP P + CN+ +KF+  L+  + +G
Sbjct: 59  KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD++ATGHY +   Y     K   ++  P D  +DQSYFL A + +QL    FPLGD+ K
Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + VR++AR   L ++DK DS  ICF+   K+ + + +     A+ GDI+  NG+++G+H 
Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231

Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304
           G++ YT+GQR+G+G+             +P FV   D  ++ + +        L    + 
Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQ 363
              ++W+     E+A   G K   ++R  Q       V+ N++ V V F+  +  V  GQ
Sbjct: 292 ASHMHWV----LEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVQFDNPQRAVTLGQ 347

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y+ D      LGGG IS
Sbjct: 348 SLVLYSGD----YCLGGGFIS 364


>gi|322420793|ref|YP_004200016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
 gi|320127180|gb|ADW14740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
          Length = 357

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/375 (40%), Positives = 205/375 (54%), Gaps = 23/375 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  + K  ++ VAMSGGVDSS VAALLK  G +VIG+ ++L+               Q  
Sbjct: 1   MSADYKGKKIAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFRREGED--------PQAK 52

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR V + + +  +    EE F   ++  F S Y  GETP PCV CNR VKF  LL   
Sbjct: 53  GDARIVAEYLGIEFHQVHLEEEFARLIMEDFRSQYLGGETPNPCVRCNRYVKFGLLLDKA 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LGAD LATGHY+R+      D      + +   L +DQSYFL+  TQ QL  + FPLG
Sbjct: 113 LELGADYLATGHYVRTSR----DDSGTYHLLKAAHLAKDQSYFLYTLTQPQLARVLFPLG 168

Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           DM  K+ VR  A   G+ +A KSDSQ+ICFV    Y   +++        G+IVH+NG +
Sbjct: 169 DMPSKDEVRKRAAAFGIPVAQKSDSQEICFVPGDDYVAFLEKDGRLAGKSGEIVHVNGTV 228

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRHNG   YTIGQRRGLG+A  EPL+VV +D  ++RV+VG    L    +   +++W+ 
Sbjct: 229 LGRHNGTHRYTIGQRRGLGIAWKEPLYVVAIDAINARVVVGEVGILFAPGLTACDLSWVV 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                    +  +   KIR  Q+PV   V+   DG   V F + +  V  GQ+ VFY  +
Sbjct: 289 -----PPDGETVQTTCKIRYRQNPVECSVKLLGDGRGEVRFSEPQKSVTPGQSVVFYQDE 343

Query: 372 SNEARVLGGGIISGS 386
                ++GGG I G+
Sbjct: 344 ----ELVGGGRIVGA 354


>gi|87198069|ref|YP_495326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|123487802|sp|Q2G2Z1|MNMA_NOVAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|87133750|gb|ABD24492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 384

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 187/394 (47%), Positives = 240/394 (60%), Gaps = 23/394 (5%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +S A+ L   DLD      R+VVAMSGGVDSSVVA L    G +VIGVTLQLY+   A+
Sbjct: 6   ALSGASSL--FDLDGPMSARRIVVAMSGGVDSSVVAGLAAATGAEVIGVTLQLYDYGAAT 63

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAG D+ DAR V D + ++HYVFD+E  FR  V+  FA  Y +G TP+PCV CN
Sbjct: 64  GRKGACCAGDDIRDARAVADRLGIAHYVFDHESSFREEVVERFADDYLSGRTPIPCVRCN 123

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              KF+DLL++ R+LGAD LATGHY+R  +     G     + R +D  RDQSYFL+ TT
Sbjct: 124 MGPKFTDLLAMARELGADCLATGHYVRRVM-----GPAGPELHRAVDPARDQSYFLYGTT 178

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           ++QL  LRFPLG + K   R +A E+GL +A K DSQDICFV  G Y  VV+ +      
Sbjct: 179 EEQLAFLRFPLGGLPKTETRLIAEELGLAVAAKPDSQDICFVPDGDYARVVRSVRPEGDA 238

Query: 242 EGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLE 299
            G+IVH   G++LG H GII+YT+GQRRGL +    EPL+V+ LD  S RV+VGPR  L 
Sbjct: 239 PGEIVHAATGEVLGTHRGIIHYTVGQRRGLEIGGQPEPLYVIGLDAPSRRVLVGPRPMLA 298

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSE 356
           V    + E N +G     DA         K+RS   PVPV ++ +        + F + E
Sbjct: 299 VASATIVETNRIG--PLPDAP-----LTAKVRSLARPVPVVLEGSFGEGASARIRFSQPE 351

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
            GVA GQA V Y  D    RV+GGG I  ++R +
Sbjct: 352 YGVAPGQAAVLYAGD----RVVGGGWIDSTERWE 381


>gi|284035746|ref|YP_003385676.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirosoma linguale DSM 74]
 gi|283815039|gb|ADB36877.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirosoma linguale DSM 74]
          Length = 391

 Score =  424 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 207/379 (54%), Gaps = 20/379 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGG+DSS+ A +L  +GY+VIG+T++ ++  S   +K++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGIDSSLAAVMLHEEGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +  ++   HY+ D  E F +AVI  F   Y  G TP PCV CN  +K+  LL    +L
Sbjct: 63  RNIAVSLGFPHYILDIREEFGDAVIDHFTGEYLEGRTPNPCVMCNTHIKWDALLRRADRL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R     +   R ++ + +D  +DQSY L+  +Q+ L   + PLG ++
Sbjct: 123 DCESIATGHYAHIR-----EDNGRFVLSKGVDTLKDQSYVLWGVSQESLSRTKLPLGHLR 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHL-NGQ 251
           K  +RD+A E G  ++  KS+S +ICFV    Y   +KR   G+  E   G+ V    G+
Sbjct: 178 KSEIRDMATERGFMELVTKSESYEICFVPDNDYRGFLKRRMPGLEAEVAGGNFVMEGTGK 237

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +LG+H G   YTIGQR+GLG+A G+P+FV  + K+++ V++G  + L    + + ++N  
Sbjct: 238 VLGKHQGYPFYTIGQRKGLGMAFGQPMFVTEIRKDTNEVVLGVDKDLYRDGMIVSKLNL- 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                   +    +   K+R         + ++ D + V F++    +A GQA VFY  D
Sbjct: 297 ---QKYPTLNGPMETVTKVRYKDPGTAATISQSGDKIEVLFKEGVSAIAPGQAAVFYEGD 353

Query: 372 SNEARVLGGGIISGSKRSD 390
                V+GGG I  S R  
Sbjct: 354 D----VIGGGWIMKSFRQG 368


>gi|238019350|ref|ZP_04599776.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748]
 gi|237864049|gb|EEP65339.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748]
          Length = 363

 Score =  424 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 199/364 (54%), Gaps = 18/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+                 V DA+++CD 
Sbjct: 15  IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLW-----VSGTPYDSVPLAVTDAKKMCDF 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F + V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 70  LGIEHHVIDARDVFYDNVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 130 TGHYAQVNY---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G++LG+HNG+ NY
Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKDKPKSGNIVTEDGEVLGKHNGLFNY 246

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  +   + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 306

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY       ++LGG 
Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 357

Query: 382 IISG 385
           +I  
Sbjct: 358 VIDR 361


>gi|269797937|ref|YP_003311837.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Veillonella parvula DSM 2008]
 gi|282850166|ref|ZP_06259545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella parvula ATCC 17745]
 gi|269094566|gb|ACZ24557.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Veillonella parvula DSM 2008]
 gi|282579659|gb|EFB85063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella parvula ATCC 17745]
          Length = 353

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/364 (37%), Positives = 201/364 (55%), Gaps = 18/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 120 TGHYAQVNY---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V     G    G+IV  +G++LG+HNG+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY       ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 347

Query: 382 IISG 385
           +I  
Sbjct: 348 VIDR 351


>gi|163846255|ref|YP_001634299.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524010|ref|YP_002568480.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus sp. Y-400-fl]
 gi|205811637|sp|A9WFH2|MNMA_CHLAA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811449|sp|B9LK98|MNMA_CHLSY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163667544|gb|ABY33910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus aurantiacus J-10-fl]
 gi|222447889|gb|ACM52155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus sp. Y-400-fl]
          Length = 359

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/364 (42%), Positives = 216/364 (59%), Gaps = 13/364 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSS+ AALL   G+ V GVT+ L++  +   R+  CCA +    ARRVC  
Sbjct: 4   VLVAMSGGVDSSLAAALLLEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAAASARRVCAL 63

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  YVF+Y+  FR  VI  F  +Y  G TP PCV+CNR +KF  LL   R LG D +A
Sbjct: 64  LGIPFYVFNYQREFRRHVIDYFIRAYTHGLTPNPCVECNRMIKFRALLDRARTLGFDAVA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +  G+DG  R  + R +DLE+DQSY L    Q +L  L FP+G   K  VR+
Sbjct: 124 TGHYAR--IIQGEDG--RYQLWRAVDLEKDQSYMLHMLGQAELSRLIFPIGAYTKREVRE 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A   GL  AD+ +SQDICFV  G Y ++++  +    + G IV L G+ +GRH G+  Y
Sbjct: 180 MAAARGLPSADREESQDICFVPDGDYRNLLRIESPESLVPGPIVDLEGREIGRHRGLPLY 239

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQRRGLG+  GEP +VV +D   + +IVGP  +L   R  + +  W+ D        +
Sbjct: 240 TVGQRRGLGLGGGEPRYVVAIDPARNALIVGPAAALNRARFTVIDACWVDDA----PPAE 295

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            F C V++R+  +P+P  V +  DG + V+ E+ +  V+ GQA VFY       +VLGGG
Sbjct: 296 SFTCLVQVRAHAEPLPARVSQQPDGRWLVELERPQRAVSPGQAAVFYRG----QQVLGGG 351

Query: 382 IISG 385
            I+ 
Sbjct: 352 WIAR 355


>gi|329849969|ref|ZP_08264815.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Asticcacaulis biprosthecum C19]
 gi|328841880|gb|EGF91450.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Asticcacaulis biprosthecum C19]
          Length = 395

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 189/373 (50%), Positives = 251/373 (67%), Gaps = 7/373 (1%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   R+V AMSGGVDS+VVAALL   GY+VIGVTLQLY+   A K+ G+CCAGQD++DAR
Sbjct: 28  PAGARIVAAMSGGVDSTVVAALLAAAGYEVIGVTLQLYDHGAALKKTGACCAGQDIHDAR 87

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I + HYV DYE RFR+ VI  FA SY  GETP+PC+ CN++VKF+DLL V R LG
Sbjct: 88  MASEKIGIPHYVLDYESRFRDQVIEEFADSYLRGETPVPCIRCNQSVKFNDLLQVARDLG 147

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY+        D      + R  D  RDQSYFLFATT++QL  LRFPL  + K
Sbjct: 148 AEAMATGHYVERS-----DEDGVVSLRRAADQSRDQSYFLFATTREQLDYLRFPLAGIPK 202

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VRD+A ++GL +A K DSQDICFV +GKY +++ R+      +G I H++G++LG H+
Sbjct: 203 PQVRDIAVQLGLKVAQKPDSQDICFVPEGKYTNLIDRLRPQGREKGAIRHIDGRVLGTHD 262

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YTIGQRRGL VA+GEPLFVV +D ++  ++VGPRE+L    + L+E NWLG     
Sbjct: 263 GITGYTIGQRRGLNVAVGEPLFVVKIDPDAKEILVGPREALLTRALTLKETNWLGSETDV 322

Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           DA     K    ++RS++ PV   +     G+ V+F+ +E GVA GQACV Y  + +  R
Sbjct: 323 DAAAGLRKPVLARVRSTRPPVAARLVAGVSGIEVEFDDAEEGVAPGQACVLYDVE-DSGR 381

Query: 377 VLGGGIISGSKRS 389
           VLGGG I+ ++ +
Sbjct: 382 VLGGGFIAATRAA 394


>gi|89898460|ref|YP_515570.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila felis Fe/C-56]
 gi|123483134|sp|Q253W3|MNMA_CHLFF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89331832|dbj|BAE81425.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 361

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 187/380 (49%), Gaps = 27/380 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  VVVAMSGGVDSSVVA LLK    Y V+G+ ++ +        +G C   +D  D  +
Sbjct: 2   NKTVVVAMSGGVDSSVVAYLLKNYTSYKVLGLFMKNWEEEDG---EGLCSTAKDYEDVEK 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++ +Y   + + +R  V   F + Y+ G TP P V CNR +KF  L    R+LG 
Sbjct: 59  VAGQLDIPYYTVSFAKEYRERVFSRFLTGYSEGYTPNPDVLCNREIKFDLLQKKVRELGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R         +    + R +D ++DQSYFL  T ++ L ++ FPLGD  K 
Sbjct: 119 DFLATGHYCRVSPD-----ENGVNLLRGIDPQKDQSYFLCGTRKESLENVIFPLGDKTKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257
            VR +A + GL  A K DS  ICF+ +  +   +++    +  EG+IV  +  +++G H 
Sbjct: 174 EVRSIAAQAGLATAQKRDSTGICFIGKRPFKSFLEKFVPNL--EGNIVDYDSQRVVGHHE 231

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           G   YTIGQRRGL +   E P +VV  D   + V +        L    +  RE+NW   
Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTARELNWFV- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                +      C  K+R   +      + R +D V V F      +  GQA  FY  + 
Sbjct: 291 -----SPKSITTCSAKVRYRSNDEECEILLRGEDEVLVRFASPVKAITPGQAIAFYDGE- 344

Query: 373 NEARVLGGGIISGSKRSDAV 392
              R LGGG+I  S    +V
Sbjct: 345 ---RCLGGGVIEISMTPQSV 361


>gi|118580257|ref|YP_901507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter propionicus DSM 2379]
 gi|205816920|sp|A1AQ29|MNMA_PELPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118502967|gb|ABK99449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter propionicus DSM 2379]
          Length = 355

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 203/372 (54%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ VAMSGGVDSSV AALLK  G+++IG+T+Q +          +  A           
Sbjct: 1   MKIAVAMSGGVDSSVAAALLKEQGHEIIGITMQFFAPSCQGAGTPAHDAAVVAA------ 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + ++H++ D E  FR  +I  F S Y +G+TP PCV CNR VKF  LL   R+ GAD+
Sbjct: 55  -HLGITHHLLDLEHDFRQLIINDFISQYRSGQTPNPCVRCNRFVKFGLLLDAARERGADL 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199
           LATGHY R+ +    D    R +    +L +DQ+YFL   +Q++L  + FPLGD+  K+ 
Sbjct: 114 LATGHYARTSI----DPDGTRHLRVAANLRKDQTYFLHTLSQERLARVVFPLGDIGSKDE 169

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VRDLA   GL +A+K DSQ++CF+    Y   ++   A     GDIVH+NG++LGRH G 
Sbjct: 170 VRDLAHRFGLPVAEKGDSQEVCFIPNDDYVSYLEENCALGGETGDIVHVNGRLLGRHRGT 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG+A  EPL+VV +D     V+VG    +    +   E+ W+        
Sbjct: 230 HRYTIGQRKGLGIAWSEPLYVVEIDAARKLVVVGEEPHVYAQGLKAEEVGWI-----IAP 284

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             + F+   KIR    PV   V     G   V F +    V  GQ+ VFY  D     VL
Sbjct: 285 GKEEFEASCKIRYRHQPVACRVTLLQGGACRVLFHEPLKAVTPGQSVVFYQDD----EVL 340

Query: 379 GGGIISGSKRSD 390
           GGG I+ + + D
Sbjct: 341 GGGRITAAIKRD 352


>gi|326336750|ref|ZP_08202918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691220|gb|EGD33191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 396

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 122/403 (30%), Positives = 202/403 (50%), Gaps = 49/403 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LL+R+GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQREGYEVIGIFMKNWHDDSVT-ISNECPWLEDSNDALMVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E ++  ++      Y  G TP P V CNR +KF+  L +   LGAD 
Sbjct: 61  EKLGIPFQTVDMSEPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLELALNLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  +G++   +    D  +DQSYFL   +QQQL    FP+G+++K  V
Sbjct: 121 VATGHYCR-KEEIEVNGQKIYRLLTGKDNNKDQSYFLCQLSQQQLEKALFPIGNLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+++ L  A+K DSQ +CFV + +  + +++  A    EG+I+ +            
Sbjct: 180 RTIAKQLDLVTAEKKDSQGLCFVGKVRLPEFLQQQLA--PKEGNIIEIPASWQGYQNKIP 237

Query: 249 ----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDK 285
                                 +G+I+G+H G   +TIGQR+GL V    EPLFV+  + 
Sbjct: 238 PVFKSYEDELHYYAKKYNYQPTDGKIVGKHEGAHFFTIGQRKGLHVGGTVEPLFVIETNT 297

Query: 286 NSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340
            ++ + VG       L    +++   +++W+   L   +     K  V+IR  Q      
Sbjct: 298 QNNIIYVGQGSKHPGLFRRALFVKKEDVHWIRPDLAL-SPFQSMKVDVRIRYRQPLQKAH 356

Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +   + G+Y+DF + +  + SGQ  V+Y  +     ++G G I
Sbjct: 357 LYLTNKGLYIDFIQPQSAITSGQFAVWYIEE----ELIGSGEI 395


>gi|313893420|ref|ZP_07826992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442061|gb|EFR60481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 353

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 134/364 (36%), Positives = 200/364 (54%), Gaps = 18/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 120 TGHYAQVNF---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G++LG+HNG+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKAKPKTGNIVTEDGEVLGKHNGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  + + + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V FE+ +  +  GQ+  FY       ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 347

Query: 382 IISG 385
           +I  
Sbjct: 348 VIDR 351


>gi|303232130|ref|ZP_07318833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513236|gb|EFL55275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 353

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 132/364 (36%), Positives = 197/364 (54%), Gaps = 18/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  L FPLG   K   R 
Sbjct: 120 TGHYAQVNY---NEDTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G+ILG+H G+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  +   + VIVGP + L  +R+     N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNDRLFTNRMICNFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V F++ +  +  GQ+  FY       ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFYNG----TQLLGGA 347

Query: 382 IISG 385
           +I  
Sbjct: 348 VIDR 351


>gi|262196730|ref|YP_003267939.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haliangium ochraceum DSM 14365]
 gi|262080077|gb|ACY16046.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haliangium ochraceum DSM 14365]
          Length = 391

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/390 (40%), Positives = 226/390 (57%), Gaps = 29/390 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVCD 81
           +V A+SGGVDS+V AA+L   G+ V+G+T++LY+ S  ++   G CC  +D+ DARRVC 
Sbjct: 7   IVAALSGGVDSAVTAAMLVEQGHRVVGMTMRLYDASGTSASVGGRCCGPRDIEDARRVCA 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  YV ++E  F + VI  F  +Y AGETP PCV CN+ +KF+ LL+  R LGA+ +
Sbjct: 67  HLGIPFYVVNFEVDFAHTVIDDFVDTYLAGETPNPCVKCNQHIKFTPLLARARALGAETV 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R      +D      + R  D  +DQSYFLF+  +++L  +RFPLG M K+ VR
Sbjct: 127 ATGHYARL-----EDTGAGIRLRRGRDASKDQSYFLFSMPREELASVRFPLGAMTKDEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK----RINAGIALEGDIVHLNGQILGRHN 257
           D AR  GL  A K+DSQ+ICFV  G Y   V+    R +  +   GDIV   GQ+LGRH 
Sbjct: 182 DKARAYGLPNAAKADSQEICFVPDGDYAGFVEAEALRRSRPVPASGDIVDGEGQVLGRHR 241

Query: 258 GIINYTIGQRRGLG-----VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+ +YTIGQRRGLG          PL+V+ +D+   RV+VGPRE      + +R++ WL 
Sbjct: 242 GVHHYTIGQRRGLGNLRTQTRSPTPLYVIGVDRARDRVVVGPREQAARRSVPVRDVRWLS 301

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQACV 366
               E  +  G    V++R    P+P  ++   +G      V V F+ + V  + GQA V
Sbjct: 302 TPPAEGRLSAG----VQVRYRSSPLPATLELCGEGDERGKRVRVHFDDAAVIASPGQAAV 357

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  D+    VLGGG I+  ++  +  +  
Sbjct: 358 FYDGDT----VLGGGWIARDEQPLSETQPP 383


>gi|303229103|ref|ZP_07315905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516227|gb|EFL58167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 353

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 198/364 (54%), Gaps = 18/364 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDSS+ AA+L + GY V G+TL L+ S               V DA+++CD 
Sbjct: 5   IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H++ D  + F   V+  F   YA G TP PCV CN+ +KF  +L+   +LGA  + 
Sbjct: 60  LGIEHHIIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY +      ++      + + +D  +DQSY ++   Q+ L  + FPLG   K   R 
Sbjct: 120 TGHYAQVNY---NEDTGLYELHKGVDPTKDQSYVMYNMNQRILSHIMFPLGGQCKTETRK 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA E  L +A K DS DICF+  G Y  +V          G+IV  +G+ILG+H G+ NY
Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A   PL+V+  +   + VIVGP E L  +R+  +  N+L D + ++   +
Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296

Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G     KIR + +P P   +  +DD + V F++ +  +  GQ+  FY       ++LGG 
Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFYNG----TQLLGGA 347

Query: 382 IISG 385
           +I  
Sbjct: 348 VIDR 351


>gi|301605226|ref|XP_002932238.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Xenopus
           (Silurana) tropicalis]
          Length = 418

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 187/388 (48%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV AMSGGVDSSV A LL+R GY+V GV +  ++   A    G C A +D  DA RVC 
Sbjct: 6   RVVCAMSGGVDSSVAALLLRRRGYEVTGVFMNNWD---AVDEHGVCSAERDCEDAYRVCK 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +   Y + + + V   F + Y  G TP P + CN+ +KF+  LS     LGAD 
Sbjct: 63  KLDIPFHQVSYVKEYWHEVFSYFLNEYEKGRTPNPDILCNKHIKFNHFLSYAIDILGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEIFQQKYIKSPQNLFRNRFEIRHDAKLLQAADRIKDQTFFLSQISQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG++ K+ V+ +A E G   +  + +S  ICF+ +  + + +       A 
Sbjct: 183 YALRKTIFPLGELTKDFVKKIAAEAGFHHVLKRKESMGICFIGERNFENFILEYLE--AQ 240

Query: 242 EGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G+ V   +G+I+GRH G   +T+GQR  +G    +  FVV  D  +  V V P     +
Sbjct: 241 PGNFVSAEDGKIMGRHKGWFLFTLGQRARIG-GQRDAWFVVDKDVTTGNVYVAPTTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++WL +   ++ V +   +C  + +     VP  +  N DG V+    K 
Sbjct: 300 LYRDLLRTDRMHWLSEDPPDELVKNKMMECHFRFQHQMALVPCVLTLNQDGTVWATLVKP 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +  GQ  VFY  +      LG G I
Sbjct: 360 IRALTPGQFAVFYKGE----ECLGSGKI 383


>gi|330684725|gb|EGG96422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU121]
          Length = 336

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 112/343 (32%), Positives = 177/343 (51%), Gaps = 20/343 (5%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           ++ ++    +   G C A +D  D   VC+ I + +Y  ++E+ + + V   F   Y  G
Sbjct: 1   MKNWDD---TDENGVCTATEDYNDVIAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKG 57

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
            TP P V CN+ +KF   L    +LGAD +ATGHY R R +          M R +D  +
Sbjct: 58  RTPNPDVMCNKEIKFKAFLEHALKLGADYVATGHYARIRRH----EDGHVEMLRGIDNNK 113

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231
           DQ+YFL   +QQQL  + FP+GD+ K+ VR +A E  L  A K DS  ICF+ +  +   
Sbjct: 114 DQTYFLNQLSQQQLSKVMFPIGDIDKKRVRQIAEEQDLATAKKKDSTGICFIGERNFKTF 173

Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRV 290
           + +     A  GD+V L+G+ +G H+G++ YTIGQR GLG+   G+P FVV  +   + +
Sbjct: 174 LSQYLP--AQSGDMVTLDGKKMGVHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVL 231

Query: 291 IV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDD 346
            V      ++L    +   +++++ +   +  +  GF C  K R  Q    VFVQR N++
Sbjct: 232 YVEQGFHHDALYSDYLIASDVSFVNEQDVD--LEKGFYCTAKFRYRQKDTKVFVQRENNE 289

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
            + V F++    +  GQA VFY  +      LGG  I    ++
Sbjct: 290 AIRVTFDEPVRAITPGQAVVFYNDEV----CLGGATIDDVYKN 328


>gi|294155486|ref|YP_003559870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma crocodyli MP145]
 gi|291599923|gb|ADE19419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma crocodyli MP145]
          Length = 372

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 181/379 (47%), Gaps = 35/379 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +VV+ MSGGVDSSV A LLK  GY+VIG+ ++ ++S   +   G+       C   QD
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYEVIGLFMRNWDSILNNDILGNEKINQDICPQEQD 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA  V   +N+  +  D+ + +   V   F   Y  G TP P + CN+ +KF+   + 
Sbjct: 63  YQDALSVAQKLNIPLHRVDFVKEYWTNVFNNFIEEYKKGRTPNPDILCNKYIKFNYFANY 122

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              +LGAD +A GHY +      ++GK    + R  D  +DQ+YFL   T++QL  +  P
Sbjct: 123 AFDKLGADYIAMGHYAKV-----ENGK----LYRAKDENKDQTYFLAQVTEEQLKKVIMP 173

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L D++K  +R LA ++ L  A+K DS  ICF+ +  +   ++      A EGDIV +   
Sbjct: 174 LYDLQKSQIRKLAADLNLSTANKKDSTGICFIGERNFTSFLQNYIP--AQEGDIVDITTN 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306
           + + +H G   YTIGQR+GL +    EP +V   +   + + V P      L+ + +   
Sbjct: 232 KKVAKHVGCFYYTIGQRKGLNLGGFVEPYYVCGHNVKENILYVAPASHPEYLDSNELIAS 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
            +             +     VK R  Q  +   ++  D+  + + + +    V  GQ  
Sbjct: 292 NL------TLNHKEFNNDNITVKFRYRQKDIKANIEILDNNFIKIYYPEKSQAVTPGQQV 345

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y  +    + LGG +I 
Sbjct: 346 VLYDGE----KCLGGAVIE 360


>gi|304372837|ref|YP_003856046.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1]
 gi|304309028|gb|ADM21508.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1]
          Length = 370

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 35/378 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S   +  KG+       C   +D  
Sbjct: 3   KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VC  +N+  Y  D+ + +   V   F   Y +G+TP P + CN+ +KF   L    
Sbjct: 63  DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122

Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   AD +A GHY ++     ++GK    + +  DL +DQSYFL      QL    FPL 
Sbjct: 123 KTFNADFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           ++ K  VR +A E+ L   +K DS  ICF+ + K+ D ++      A  GDIV ++  + 
Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQNYIP--AQPGDIVDISKNKK 231

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G+H GI+ +T+GQR+GLG+  M +P FVV  +     + V P    + L   +     +
Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQWLISDKADGINL 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           N +      +   D  K  VK R  Q+ +P  +Q  D+  + V++ +    V  GQ  V 
Sbjct: 292 NLI------ETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQEVVI 345

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  D    + +G   I  
Sbjct: 346 YQED----KCIGAATIDK 359


>gi|291296936|ref|YP_003508334.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Meiothermus ruber DSM 1279]
 gi|290471895|gb|ADD29314.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Meiothermus ruber DSM 1279]
          Length = 362

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 209/370 (56%), Gaps = 25/370 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+ AMSGGVDSSV AALLK+ GY+VIG  ++ +   K      +CC+    Y+ARRV
Sbjct: 2   GKRVLAAMSGGVDSSVSAALLKQQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARRV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  Y+ DY E F+  +I PF + Y  GETP PCV+CN  VKF  LL   R LG D
Sbjct: 62  ADIIGIPFYLLDYREEFQEKIIDPFIAGYQQGETPNPCVNCNTRVKFDSLLKKARMLGCD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+ +R     DG     + R  D ++DQ+YFL+ T ++ +  + FP+G ++K  
Sbjct: 122 YVATGHYVINR-----DGG----LYRG-DPKKDQTYFLWGTPKEAIPHMLFPVGHLEKPQ 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR LA + GL  A K +SQ+ICFV QG   D + +     A  G ++ L  GQ +G HNG
Sbjct: 172 VRALAEQFGLPTAKKPESQNICFV-QGDLKDFLAQHL--SARPGPLIDLETGQQIGEHNG 228

Query: 259 IINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              YT+GQ++GLG+       +VV ++  ++ VIVGPRE+     + +RE+N     L  
Sbjct: 229 AQFYTVGQKKGLGLWKSHLERYVVQVNTTTNEVIVGPREACMWGGLEIREVN-----LLV 283

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +A     +  V++R    PVP  V+  +   + +   + +  V  GQ+ V Y  +    R
Sbjct: 284 EAQDLPERLEVQVRYRTRPVPARVEAMEAGRMVIRLAEPQFAVTPGQSAVLYQGE----R 339

Query: 377 VLGGGIISGS 386
           +LGGG I+ +
Sbjct: 340 LLGGGFITRA 349


>gi|84624072|ref|YP_451444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123521874|sp|Q2P2Q7|MNMA_XANOM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84368012|dbj|BAE69170.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 378

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 179/386 (46%), Gaps = 31/386 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            +VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 5   HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 61  VLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +           R       D ++DQSYFL    Q QL    FP+GD++K ++R
Sbjct: 121 ATGHYAQVAHRGRRWRLLRG-----ADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +AR+ GL    K DS  ICF+ +  + + + R     A  G+I    GQ +  H G+  
Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233

Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313
           +T+GQR GL +         P +VV  D  S+ + V        L+   +   + +W+  
Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C  + R  Q   P  V   DDG V V FE+ +  V  GQ+ V Y    
Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLYDG-- 347

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LGG +I+ +   DA  E  L+
Sbjct: 348 --KECLGGAVIAAT---DAPLERQLA 368


>gi|255536681|ref|YP_003097052.1| tRNA-specific 2-thiouridylase MnmA [Flavobacteriaceae bacterium
           3519-10]
 gi|255342877|gb|ACU08990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 395

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 120/403 (29%), Positives = 194/403 (48%), Gaps = 47/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV +SGGVDSSV A LL++ G++V+ + ++ +N    +     C   +D  DA  V 
Sbjct: 1   MKIVVGLSGGVDSSVAAYLLQKQGHEVVALFMRNWNDASVTLED-ECPWIEDSNDALMVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E ++  ++    + Y  G TP P V CNR VKF   +     LGA+ 
Sbjct: 60  QKLGIPFQVIDMSELYKEKIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTALSLGAEK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R    V ++G     +    D  +DQSYFL   +Q QL    FP+G++ K  V
Sbjct: 120 VATGHYARVDSTVDENGNEMFHLLAGKDNNKDQSYFLCQLSQDQLSKSLFPIGELTKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A+E+GL  ADK DSQ +CF+ +      +++       EG IV +            
Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPTFLQQQLK--PKEGKIVEIFKDFPELTAEKP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286
                                +G+I+G+H G   +TIGQ +GLG+    E  F++  D  
Sbjct: 238 QFATKLEELKFLSTKNSYQESDGKIIGKHQGAHYFTIGQSKGLGIGGHKESCFIISRDMP 297

Query: 287 SSRVIVGPR---ESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           ++ + VG       L    + +   EI+W+ + L      +  K   +IR  Q      +
Sbjct: 298 TNTIFVGEGKNFPGLYQTALKIDPSEIHWVREDL-RLLNGETMKVQARIRYRQALEEATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + ++G++++FE  +  VA GQ   +Y  D     +LG G+IS
Sbjct: 357 YQFEEGLFIEFENPQSAVAEGQFAAWYMED----ELLGSGVIS 395


>gi|237739900|ref|ZP_04570381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
 gi|229423508|gb|EEO38555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
          Length = 362

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/376 (35%), Positives = 203/376 (53%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D + K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSDKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA+++G+ +  K DSQ+ICF+  GK  + +     G A   G+IV  NG
Sbjct: 172 VGDLEKPKLRELAKQIGVRVYSKKDSQEICFIDDGKLKEFLIENTKGKAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +ILG+H G   YTIGQR+GLG++  EPL+V+  DK+++ +IVG  E L    +    +N 
Sbjct: 232 KILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELVATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        +++N D   V F +     +  GQ  VFY 
Sbjct: 292 FSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           +D N   V+ GG I  
Sbjct: 350 NDGN---VIAGGFIES 362


>gi|330444363|ref|YP_004377349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pecorum E58]
 gi|328807473|gb|AEB41646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pecorum E58]
          Length = 361

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 187/372 (50%), Gaps = 27/372 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  VVVAMSGGVDSSVVA LLKR   Y+V+G+ ++ +  +        C + QD  D  +
Sbjct: 2   NKTVVVAMSGGVDSSVVAYLLKRYTSYNVVGLFMKNWEEKTHDD---VCLSAQDYADVEK 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  +++ +Y   +   ++  V   F   Y+ G TP P + CNR +KF+ L    R+LG 
Sbjct: 59  VCSQLDIPYYTVSFVREYQELVFSRFLKEYSLGYTPNPDILCNREIKFALLQKKVRELGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY RS L           + R +D  +DQSYFL  T +Q L ++ FPLG+MKK 
Sbjct: 119 DFLATGHYCRSNLDAS-----GVSLFRGVDRNKDQSYFLSGTPRQALANVLFPLGEMKKN 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHN 257
            VR LA E GL  A K DS  ICF+ +  +   +++       EGDIV  + Q ILG+H 
Sbjct: 174 EVRALAEEAGLATARKKDSTGICFIGKRPFKQFLEQFVPK--KEGDIVDWDTQTILGKHE 231

Query: 258 GIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
           G   YTIGQRRGL      +P +VV  D   + V +        L    ++ +E+NW  D
Sbjct: 232 GAHYYTIGQRRGLDLGGTSKPCYVVGKDMEKNLVYIVQGEDHPLLYRTELFAKELNWFVD 291

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                       C  ++R   +     ++  ++D + V F      V  GQ   FY  D 
Sbjct: 292 ------PKSVHTCTAQVRYRSEDEQCTIEFVSEDRLRVCFITPIKAVTPGQTIAFYQGD- 344

Query: 373 NEARVLGGGIIS 384
              R LG G+I 
Sbjct: 345 ---RCLGSGVID 353


>gi|330723585|gb|AEC45955.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyorhinis MCLD]
          Length = 370

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 191/378 (50%), Gaps = 35/378 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S   +  KG+       C   +D  
Sbjct: 3   KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+ VC  +N+  Y  D+ + +   V   F   Y +G+TP P + CN+ +KF   L    
Sbjct: 63  DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122

Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +    D +A GHY ++     ++GK    + +  DL +DQSYFL      QL    FPL 
Sbjct: 123 KTFNVDFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           ++ K  VR +A E+ L   +K DS  ICF+ + K+ D ++      A  GDIV ++  + 
Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQNYIP--AQPGDIVDISKNKK 231

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G+H GI+ +T+GQR+GLG+  M +P FVV  +     + V P    + L   +     +
Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQWLISDKADGINL 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           N +      +   D  K  VK R  Q+ +P  +Q  D+  + V++ +    V  GQ  V 
Sbjct: 292 NLI------ETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQEVVI 345

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  D    + +G   I  
Sbjct: 346 YQED----KCIGAATIDK 359


>gi|260892132|ref|YP_003238229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ammonifex degensii KC4]
 gi|260864273|gb|ACX51379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ammonifex degensii KC4]
          Length = 344

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 138/364 (37%), Positives = 194/364 (53%), Gaps = 27/364 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV VA+SGGVDS+  A LL + GY+V GVT+                 G++   A  V 
Sbjct: 2   TRVAVALSGGVDSATAAFLLLQAGYEVFGVTM--------------LVTGEEGEKAAEVA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H+VFD  + F   VI PF  +Y AG TP PCV CNR +KF  LL    +LGAD 
Sbjct: 48  AKLKIPHFVFDLRQEFAQEVIKPFVEAYLAGLTPNPCVWCNRKLKFGLLLEKALKLGADF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      D  + R ++ R  D  +DQSYFL++  QQQL  + FPLG   K   
Sbjct: 108 LATGHYARVWF---DPARERYLLARGKDRRKDQSYFLYSLNQQQLARVLFPLGGRTKAEN 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
             L +++GL + +  +SQD+CF++ G Y +++K +       G I+   G+ +G H G+ 
Sbjct: 165 LLLVKKLGLPLRE--ESQDVCFLKGGDYRELIKAMAQEKVKPGPILDPQGKKIGTHRGLA 222

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG A G+P +V+ LD   + +IVGP E L      +  IN++      +  
Sbjct: 223 FYTIGQRRGLGHAWGKPYYVLALDPRRNALIVGPEEMLYRPSCRVEGINFI----LFERP 278

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              F   V++R +   VP  +    + V V+F   +  V  GQA VFY  D     V+GG
Sbjct: 279 PGPFTAAVQVRYTSPAVPATLFPEGEAVRVEFASPQRAVTPGQAAVFYQED----LVVGG 334

Query: 381 GIIS 384
           G I+
Sbjct: 335 GTIA 338


>gi|257470341|ref|ZP_05634432.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064551|ref|ZP_07929036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313690227|gb|EFS27062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 359

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 31/375 (8%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D+N K   + VAMSGGVDSS VA LLK+ GY+V GVT++              C  +
Sbjct: 12  LQYDENNKSTTIAVAMSGGVDSSTVAYLLKKQGYNVFGVTMK-------------TCKPE 58

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA++VCD + + +Y+ D  + F+  V+  F   Y  G+TP PC+ CN+ +K   L+ 
Sbjct: 59  D-SDAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLID 117

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R  GAD +ATGHY + +     DG    ++    D  +DQ YFL    +  L  L+FP
Sbjct: 118 FARSKGADFMATGHYTQMK-----DG----VLSMGDDAGKDQVYFLSQMKKDNLKYLKFP 168

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNG 250
           +G+++K  VR+LA+ +G+ +  K DSQ+ICFV+ GK  + + +  N      G+I+ +NG
Sbjct: 169 IGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMSNGKAGKPGNIIDVNG 228

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++LG+H G+  YTIGQR+GLG+A+  PL+V+ LD   + VIVGP E L  + +    +N 
Sbjct: 229 KVLGKHKGLSFYTIGQRKGLGIALESPLYVIELDSKRNCVIVGPNEMLFKNSLIAESVNL 288

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSE-VGVASGQACVFY 368
           +     ED  ++G +C+ K RS        ++  +   + V+F +++   V  GQ  VFY
Sbjct: 289 ISVDNIED--LNGIECWAKTRSRDQLHKCKLEVLSSGNIKVNFIENQVRAVTPGQGVVFY 346

Query: 369 TSDSNEARVLGGGII 383
             D    +VLG G I
Sbjct: 347 DED---HKVLGSGFI 358


>gi|295130676|ref|YP_003581339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK137]
 gi|291375276|gb|ADD99130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK137]
          Length = 366

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 147/381 (38%), Positives = 204/381 (53%), Gaps = 21/381 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +
Sbjct: 121 AVATGHYARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMN 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG 
Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTRGWLSEKIG--SADGEIRDESGALVGHHNGY 233

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            ++TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W     
Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS--- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D    
Sbjct: 291 --SEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD---- 344

Query: 376 RVLGGGIISGSKRSDAVEESL 396
            V+G   I G+ R+    E  
Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365


>gi|254468139|ref|ZP_05081545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
           proteobacterium KB13]
 gi|207086949|gb|EDZ64232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
           proteobacterium KB13]
          Length = 364

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 185/380 (48%), Gaps = 28/380 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   ++V +SGGVDS+V A +LK+ G++V G+ ++ + +    +    C + QD+ DA  
Sbjct: 2   KKKNIIVGLSGGVDSAVTAHILKQQGHNVRGLFMKNWEADDDDE---YCSSKQDLIDAIS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + I +   V ++ + ++  V   F      G TP P + CN  +KF   L+   QLGA
Sbjct: 59  VAEKIGIDIEVVNFAKEYKEKVFNLFIDGLKKGFTPNPDILCNSEIKFEAFLNHAMQLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY         +      + + MD  +DQSYFL    QQQL    FPLG + K 
Sbjct: 119 DHIATGHYADVV-----EKDGLFYLLKGMDSTKDQSYFLHKLNQQQLSKSIFPLGKILKS 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E  L   D+ DS  ICF+ +  + + + +        GDIV ++G+ +G+HNG
Sbjct: 174 DVRKIAKENNLHNHDRKDSTGICFIGERPFAEFLNQFIPK--NPGDIVTVDGKNIGKHNG 231

Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           +  YT+GQR+     G     GEP FV   D   +++IV       +L    I   EI+ 
Sbjct: 232 LTFYTVGQRQGLGIGGTSSGSGEPWFVAKKDMKENQLIVAQGKNHPALYHDSIEAEEIHA 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369
           + +     +V+       KIR  Q      + + N DG+   F + +  V  GQ  VFY 
Sbjct: 292 ISNSFPIQSVIG-----AKIRYRQPDAACQINEINSDGLVSFFGQKQWAVTPGQYIVFYD 346

Query: 370 SDSNEARVLGGGIISGSKRS 389
           S+      LGG +I     S
Sbjct: 347 SNI----CLGGAVIKSGFNS 362


>gi|29840118|ref|NP_829224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila caviae GPIC]
 gi|33301704|sp|Q820E9|MNMA_CHLCV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29834466|gb|AAP05102.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila caviae GPIC]
          Length = 360

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 184/375 (49%), Gaps = 28/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  VVVAMSGGVDSSVVA LLK    Y VIG+ ++ +    +    G C   +D  D  R
Sbjct: 2   NKTVVVAMSGGVDSSVVAYLLKTTTPYKVIGLFMKNWEEEDSD---GLCSTAKDYEDVER 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++ +Y   + + +R  V   F   Y+ G TP P V CNR +KF  L    R+LG 
Sbjct: 59  VAGQLDIPYYTVSFAKEYRERVFSRFLREYSKGYTPNPDVLCNREIKFDLLQRKVRELGG 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R            R + R +D ++DQSYFL  T ++ L ++ FPLG M K 
Sbjct: 119 DFLATGHYCRLSSAA-----EGRHLLRGLDPQKDQSYFLCGTRRESLDNVLFPLGGMTKT 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257
            VR +A +  L  A K DS  ICF+ +  +   +++    +  EGDIV  +  +++GRH 
Sbjct: 174 KVRAIAEQARLATAQKRDSTGICFIGKRPFKSFLEKFVPNV--EGDIVDYDSQKVVGRHE 231

Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
           G   YTIGQRRGL +   E P +VV  D   + V +        L    +  +E+NW   
Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTAKELNWFV- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371
                +     +C  K+R   +     +  +D+   V V F      +  GQ   FY  +
Sbjct: 291 -----SPESITRCSAKVRYRSEDEECEILHSDEDSEVRVRFSSPVKAITPGQTIAFYDGE 345

Query: 372 SNEARVLGGGIISGS 386
               + LGGG+I  S
Sbjct: 346 ----KCLGGGVIEVS 356


>gi|294677198|ref|YP_003577813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter capsulatus SB 1003]
 gi|294476018|gb|ADE85406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter capsulatus SB 1003]
          Length = 354

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/364 (50%), Positives = 237/364 (65%), Gaps = 14/364 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVAA+LK +GYDVIGVTLQLY+   A  +KG+CCAGQD++DARRV + +N  
Sbjct: 1   MSGGVDSSVVAAMLKEEGYDVIGVTLQLYDHGAALAKKGACCAGQDIHDARRVAEAMNFP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV DYE  FR AVI  FA +Y AG TP+PC+ CN  VKF DLL   R L AD +ATGHY
Sbjct: 61  HYVLDYENTFREAVIEEFADAYLAGATPVPCIRCNERVKFKDLLETARDLDADCMATGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205
           I+ +L     G     +    D  RDQSYFLF+TT +QL  LRFPLG +  K   R LA 
Sbjct: 121 IQRKL-----GAHGPELHSAADPMRDQSYFLFSTTPEQLAFLRFPLGHLPSKAETRKLAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
             GL +ADK DSQDICFV   +  +  +++  G A  G+IV L G++LG H G+I+YTIG
Sbjct: 176 RFGLIVADKPDSQDICFVP-TELCERHRKLRPGAADPGEIVDLAGKVLGHHKGVIHYTIG 234

Query: 266 QRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323
           QRRGLG+      PL+VV LD ++ RVIVGP+E+L    + + EINWLGD  FE      
Sbjct: 235 QRRGLGIGGLGDHPLYVVKLDPDTRRVIVGPKEALATRLLRVAEINWLGDEPFESHP--E 292

Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
            +  V+IRS++ P P  ++  +     V+  + E GV+ GQACVFY  ++  +R+ GGG 
Sbjct: 293 REVSVRIRSTRAPRPAILRPLSATTAEVELIEPEEGVSPGQACVFY--ETEGSRIFGGGW 350

Query: 383 ISGS 386
           I  +
Sbjct: 351 IVTA 354


>gi|332168761|gb|AEE18016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 397

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/405 (30%), Positives = 192/405 (47%), Gaps = 50/405 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V 
Sbjct: 2   KTVVVGLSGGVDSSVTAHLLKEQGYNVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E++R  ++      Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEQYRERIVNYMFKEYEMGRTPNPDVLCNREIKFDVFMKIALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +  +  DGK    +    D  +DQSYFL   +Q+QL    FP+G ++K  V
Sbjct: 121 VATGHYCQ-KTSIEVDGKTMYQLKAGADDNKDQSYFLCQLSQEQLAKTLFPIGHLQKPKV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A E  L  A K DSQ +CF+ + +  D +++       EG IV +            
Sbjct: 180 REIALEQDLVTAGKKDSQGLCFIGKVRLPDFLQQQLK--PKEGVIVEVMEDTIPEVAGGM 237

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLD 284
                                   G+++G+H G   +TIGQR+GL V    EPLFV+  D
Sbjct: 238 EASNAFAKADLENLVKKPTYSVAEGKVVGKHQGAHYFTIGQRKGLAVGGTVEPLFVIDTD 297

Query: 285 KNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            + + +  G       L    +++   EI+W+ + L   AV +  +   +IR  Q     
Sbjct: 298 VDENVIYTGQGKNHRGLYRKGLFVKEEEIHWIREDL-TLAVDETMEVEARIRYRQPLEKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + R + G+YV F+  +  +A GQ   ++  +      LG G+IS
Sbjct: 357 TLYRVEGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397


>gi|225631290|ref|ZP_03787968.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591011|gb|EEH12215.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 370

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/386 (46%), Positives = 243/386 (62%), Gaps = 19/386 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61
           + +   +  L  DK P   + VVAMSGGVDSSV AALL   GY VIGVTLQLY     A+
Sbjct: 1   MLKEFEIEPLLKDKTPHQTKAVVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNAN 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAGQD+YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN
Sbjct: 61  ARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +TVKF DLL VT+ LGADVL TGHY+R     G+       +CR +D  +DQSYFLFATT
Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG   K  +R LA+   L I++K DSQDICFV +  Y   + ++      
Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQ 234

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           +G IV +NG++LG H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   
Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359
           +I ++E+NWL      +   +G +  VK+RSS       +   D  +   V       G+
Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGI 348

Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385
           + GQACV Y  +    +V+GGG I  
Sbjct: 349 SPGQACVAYKDE----QVIGGGWICS 370


>gi|50842596|ref|YP_055823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes KPA171202]
 gi|289425475|ref|ZP_06427252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK187]
 gi|81611733|sp|Q6A8Q1|MNMA_PROAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50840198|gb|AAT82865.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes KPA171202]
 gi|289154453|gb|EFD03141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes SK187]
          Length = 366

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/381 (38%), Positives = 204/381 (53%), Gaps = 21/381 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +
Sbjct: 121 AVATGHYARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMN 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG 
Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGY 233

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            ++TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W     
Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS--- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D    
Sbjct: 291 --SEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD---- 344

Query: 376 RVLGGGIISGSKRSDAVEESL 396
            V+G   I G+ R+    E  
Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365


>gi|58698498|ref|ZP_00373403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630917|ref|YP_002727708.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia sp. wRi]
 gi|254811470|sp|C0R4S5|MNMA_WOLWR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58534992|gb|EAL59086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225592898|gb|ACN95917.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia sp. wRi]
          Length = 370

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 179/386 (46%), Positives = 244/386 (63%), Gaps = 19/386 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61
           + +   +  L  DK P  ++ +VAMSGGVDSSV AALL   GY VIGVTLQLY     A+
Sbjct: 1   MLKEFEIEPLLKDKAPHQIKAIVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNAN 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAGQD+YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN
Sbjct: 61  ARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +TVKF DLL VT+ LGADVL TGHY+R     G+       +CR +D  +DQSYFLFATT
Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG   K  +R LA+   L I++K DSQDICFV +  Y   + ++      
Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQ 234

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           +G IV +NG++LG H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   
Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359
           +I ++E+NWL      +   +G +  VK+RSS       +   D  +   V       G+
Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGI 348

Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385
           + GQACV Y  +    +V+GGG I  
Sbjct: 349 SPGQACVAYKGE----QVIGGGWICS 370


>gi|326386236|ref|ZP_08207860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209461|gb|EGD60254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 401

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL +  +D R+VVAMSGGVDSSVVAAL  R G +VIGVTLQLY+   A+ RKG+CCAG+
Sbjct: 30  FDLPRPAQDCRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAATGRKGACCAGE 89

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D +  +HYVFD+E  FR AV+  FA  Y +G TP+PC+ CN   KF+DL++
Sbjct: 90  DIRDARAVADRLGFAHYVFDHESDFREAVVERFADDYLSGRTPIPCIRCNMGPKFTDLMA 149

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R LGAD LATGHY+R  +           + R +D  RDQSYFL+ TT +QL  LRFP
Sbjct: 150 MARDLGADCLATGHYVRRVMTAT-----GPELHRAVDPARDQSYFLYGTTDEQLAFLRFP 204

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K  VR +A E+GL +A K DSQDICFV  G Y  VV  I    ++ GDIVH   G
Sbjct: 205 LGGLAKPDVRRIAGELGLGVAAKPDSQDICFVPDGDYARVVSAIRPEGSVAGDIVHAATG 264

Query: 251 QILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           ++LG+H GII+YT+GQRRGL +    EPL+VV LD  + RV+VGP+  L V R ++ E N
Sbjct: 265 EVLGQHKGIIHYTVGQRRGLEIGGQAEPLYVVALDAPARRVLVGPKAMLAVDRAHIVETN 324

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGV--YVDFEKSEVGVASGQACV 366
            +G     D          K+RS   PVPV V+    +G    + F   E GVA GQA V
Sbjct: 325 RIGPMPGPDEA-----LTAKVRSLAKPVPVAVEGPFGEGAATTIRFFAPEYGVAPGQAAV 379

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392
            Y  D    RV+GGG I  ++ +   
Sbjct: 380 IYAGD----RVVGGGWIESTENAVTA 401


>gi|86604778|ref|YP_473541.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-3-3Ab]
 gi|123508144|sp|Q2JY34|MNMA_SYNJA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86553320|gb|ABC98278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. JA-3-3Ab]
          Length = 370

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 201/370 (54%), Gaps = 19/370 (5%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           + +    L + ++  +P   R+V A+SGGVDSS VAA+L   GY V GVTL L       
Sbjct: 1   MATSPYPLVAPEIAGSPSRPRIVAALSGGVDSSTVAAILHEQGYAVEGVTLWLM------ 54

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           + KG CC    + DA  +C+ + + H++ D  E F+  ++    + YA G TPLPC  CN
Sbjct: 55  RGKGQCCT-DGLVDAAAICEQLGIPHHIVDSRELFQANIVDYLVAGYADGITPLPCSQCN 113

Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           + VKF  LL+  R+ LG   +ATGHY R R         R  + R +D ++DQSYFL+  
Sbjct: 114 KLVKFGPLLTYARETLGISQIATGHYARVRFNS---ELGRYQLLRAVDRQKDQSYFLYDL 170

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGI 239
           +Q+ L    FPLG+  K   R +A   GL  A+K +SQD+C ++  G   + + +     
Sbjct: 171 SQEHLAHSLFPLGNYTKAQTRQIAARYGLVTANKPESQDLCLIETYGSMRNFLDQHLGQ- 229

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
              G+IV   G++LG H GI +YT+GQR+GLG+A   PL+VV +D   +RV+VG RE   
Sbjct: 230 -RPGEIVDTQGRVLGSHQGIHHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEAT 288

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358
               ++R++NW+       A  +     V++R     VP   +  + + V + F + + G
Sbjct: 289 QAEAWVRQVNWVS----TPAPDEPLAVEVQVRYRTPAVPATLIPESPERVKLQFAEPQFG 344

Query: 359 VASGQACVFY 368
           V  GQA V+Y
Sbjct: 345 VTPGQAAVWY 354


>gi|86132339|ref|ZP_01050934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dokdonia donghaensis MED134]
 gi|85817258|gb|EAQ38441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dokdonia donghaensis MED134]
          Length = 397

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/405 (30%), Positives = 191/405 (47%), Gaps = 50/405 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V 
Sbjct: 2   KTVVVGLSGGVDSSVTAYLLKEQGYNVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E+++  ++      Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEQYQERIVDYMFREYEMGRTPNPDVLCNREIKFDVFMKIALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +  +  DGK    +    D  +DQSYFL   +Q QL    FP+G ++K  V
Sbjct: 121 VATGHYCQ-KSSIEVDGKTVYQLIAGADNNKDQSYFLCQLSQDQLAKTLFPIGHLQKPEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           RD+A +  L  A K DSQ +CF+ + +  D +++       EG IV +            
Sbjct: 180 RDIALQQELVTAGKKDSQGLCFIGKVRLPDFLQQQLK--PKEGVIVEVPETVIPEVAGGD 237

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLD 284
                                   G+++G+H G   +TIGQR+GLGV    EPLFV+  D
Sbjct: 238 KASNAFAKAELENLVKKPSYTVAEGRVVGKHQGAHYFTIGQRKGLGVGGTVEPLFVIDTD 297

Query: 285 KNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + +  G       L    +++   EI+W+ + L   AV +  +   +IR  Q     
Sbjct: 298 VKDNVIYTGQGKNHRGLYRKGLFVKEEEIHWIREDL-TLAVDETMQVEARIRYRQPLEKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + R D G+YV F+  +  +A GQ   ++  +      LG G+IS
Sbjct: 357 TLYRVDGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397


>gi|190571202|ref|YP_001975560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018602|ref|ZP_03334410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|229487430|sp|B3CLZ0|MNMA_WOLPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190357474|emb|CAQ54908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995553|gb|EEB56193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 368

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/385 (45%), Positives = 244/385 (63%), Gaps = 19/385 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           + +   +  L  DK P   + +VAMSGGVDSSV AALL   GY+VIGVTLQLY S   + 
Sbjct: 1   MLKEFEIEPLLKDKAPHQTKAIVAMSGGVDSSVAAALLYNLGYEVIGVTLQLYGS-DGNA 59

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           RKG+CCAGQD+YDA+ V +++   HY+ +YEE F+  VI  FA++Y  GETP+PCV CN+
Sbjct: 60  RKGACCAGQDIYDAKYVAESVGFPHYILNYEEIFKKEVIEDFANTYMRGETPIPCVRCNQ 119

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           TVKF DLL VT+ LGADVL TGHY+R     G+       +CR +D  +DQSYFLFATT+
Sbjct: 120 TVKFRDLLQVTKNLGADVLVTGHYVRRLEENGE-----VKLCRSIDKSKDQSYFLFATTE 174

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +QL  LRFPLG   K  +R LA+  GL I++K DSQDICFV +  Y   + ++      +
Sbjct: 175 EQLKLLRFPLGGFYKSDIRKLAKYFGLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQK 233

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G IV ++G++LG H+GI+N+T+GQRRGL +A  EPL+V+ ++  ++ V+VGP  +L   +
Sbjct: 234 GKIVDIHGKVLGEHSGIVNFTVGQRRGLCIAHNEPLYVIKINTENNEVVVGPINALMQKK 293

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVA 360
           I ++E+NWL      +   +G +  VK+RSS       +   D  +   V       G++
Sbjct: 294 ILVKELNWL------EQPKEGMEVTVKLRSSHAGSSATIYSTDEKNKACVILNDDYFGIS 347

Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385
            GQACV Y  +    +V+GGG I  
Sbjct: 348 PGQACVAYKGE----QVIGGGWICS 368


>gi|294783011|ref|ZP_06748335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479889|gb|EFG27666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 362

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 202/376 (53%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D + K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSDKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VC  + + HYV D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCGDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA+++G+ +  K DSQ+ICFV  GK  + +     G A   G+I+  NG
Sbjct: 172 VGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKPGNIIDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +ILG+H G   YTIGQR+GLG++  EPL+V+  DK+++ +IVG  E L    +    +N 
Sbjct: 232 KILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELTATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        +++N D   V F +     +  GQ  VFY 
Sbjct: 292 FSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           +D N   V+ GG I  
Sbjct: 350 NDGN---VIAGGFIES 362


>gi|189502542|ref|YP_001958259.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|229470222|sp|B3ETH8|MNMA_AMOA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189497983|gb|ACE06530.1| hypothetical protein Aasi_1200 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 376

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 132/386 (34%), Positives = 204/386 (52%), Gaps = 18/386 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGG+DSS+ A LL   GY+++G+T++ ++  S    K++  CC+   + DA
Sbjct: 2   KKGRVLVAMSGGIDSSITALLLHEQGYEIVGLTMKTWDYVSSGGRKKETGCCSLDSINDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V  ++   H + D  E F + VI  F S Y AG TP PCV CN  +K+  LL    +L
Sbjct: 62  RNVAVSLGFPHIILDIREEFGDYVISNFTSEYLAGRTPNPCVLCNTHIKWDALLRRADKL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R   G     R I+ R  DL +DQSY L+  +Q+ L     PLG   
Sbjct: 122 NCEYIATGHYANIRHENG-----RYIVSRGKDLNKDQSYALWGVSQESLSRTLLPLGVFT 176

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQI 252
           K  +R++A + G  ++  KS+S +ICF+    Y   +KR           G+ V  +G +
Sbjct: 177 KPEIREIASQRGFKELVTKSESYEICFIPDNDYRGFLKRRVDNLEEQVKGGEFVLEDGTV 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G   YT+GQR+GLG+ +G P++V  +  + +RV++G  + L    +Y+ ++N   
Sbjct: 237 VGHHEGYPFYTVGQRKGLGITLGYPVYVTEIQADKNRVVLGTFDELARDGMYVHKLN--- 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
            G + D          K+R +    P  ++++ D + V F K    +A GQA VFY  D 
Sbjct: 294 MGKYPDLQGRRLDSVTKVRYNDPGSPAVLEQDGDIMKVFFGKGVHAIAPGQAAVFYEGDD 353

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
               V+GGG I  S +  A ++   S
Sbjct: 354 ----VIGGGWIKASFKQPAFKKYNFS 375


>gi|289428353|ref|ZP_06430040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J165]
 gi|289158502|gb|EFD06718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J165]
          Length = 366

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/381 (38%), Positives = 204/381 (53%), Gaps = 21/381 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +
Sbjct: 121 AVATGHYARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMN 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG 
Sbjct: 176 VRQEATALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGY 233

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            ++TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W     
Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS--- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D    
Sbjct: 291 --SEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD---- 344

Query: 376 RVLGGGIISGSKRSDAVEESL 396
            V+G   I G+ R+    E  
Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365


>gi|315223915|ref|ZP_07865760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314946087|gb|EFS98091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 397

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 191/405 (47%), Gaps = 50/405 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  +GK+   +    D  +DQSYFL   +Q QL    FP+G+++K  V
Sbjct: 121 VATGHYCR-KEEIEINGKKIYRLLSGKDENKDQSYFLCQLSQDQLSKALFPIGELQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+   L  ADK DSQ +CFV + +  + +++       +GDI+ +            
Sbjct: 180 RAIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQ--PKQGDIIEISNDWKGYTDFDM 237

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284
                                  +G+ +G H G   +T GQR+GL      EPLF++  D
Sbjct: 238 PRTFETYEGELEYLSQRFVYQPEDGKKIGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETD 297

Query: 285 KNSSRVIVGP---RESLEVHRIY--LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + +  G       L    ++    + +W+ + L    V +  +  V+IR  Q     
Sbjct: 298 IEKNIIYTGQGHTHRGLFRSALFIAAPDEHWIREDLAL-KVYESKEFMVRIRYRQPLQKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + ++G+Y+ F + +  V  GQ   +Y  D     ++G G+IS
Sbjct: 357 VLYKVENGLYIHFSEPQSAVTEGQFAAWYNGD----ELVGSGVIS 397


>gi|260799001|ref|XP_002594488.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
 gi|229279722|gb|EEN50499.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
          Length = 383

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 179/369 (48%), Gaps = 24/369 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VVVA+SGGVDSSV A LLKR GY V GV ++ +++       G C A +D  DA  VC 
Sbjct: 5   HVVVALSGGVDSSVAALLLKRKGYQVTGVFMRNWDT---VNELGVCQADRDCEDAEYVCR 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            +++  +  +  + + N V       Y  G TP P + CN+ +KF    +    +  AD 
Sbjct: 62  RLDIPFHQVNLVKDYWNDVFSEMLKEYQHGWTPNPDILCNKRIKFRTFFNYVMDKFEADA 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R+ ++          + + +D  +DQ++FL    QQ L    FPLG++ K  V
Sbjct: 122 LATGHYARTSIHD-------VKLLQALDSWKDQTFFLSQIPQQALRRALFPLGELTKPVV 174

Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           + +A++ G   IA K +S  ICF+    +   ++         G  V  ++G++LG H G
Sbjct: 175 KQMAQDAGFTHIAKKKESMGICFIGTRNFPTFLQEYLE--TEPGQFVSVVDGKVLGEHKG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
              YTIGQR GLG  M EP FVV  D +++ + V P     +L    I    ++W+ D  
Sbjct: 233 ACMYTIGQRAGLG-GMKEPWFVVDRDTSTNSIFVCPTTDHPALYRQLIMTESVHWIADPP 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
            +  V   + C  + +     V   +  + +  V+V   +    +  GQ  VFY  D   
Sbjct: 292 RDLYVDQMYDCHFRFQHRMPLVKCTLTLSGNNQVWVSLAEPIRALTPGQYAVFYKGD--- 348

Query: 375 ARVLGGGII 383
              LGGG I
Sbjct: 349 -ECLGGGKI 356


>gi|237744375|ref|ZP_04574856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229431604|gb|EEO41816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 362

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 136/383 (35%), Positives = 205/383 (53%), Gaps = 31/383 (8%)

Query: 6   ATRLNS-LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           A+  N  ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +    
Sbjct: 8   ASEFNKYIEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS---- 63

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                     DA++VCD + + HYV D  + F+  V+  F S Y  G TP PC+ CNR +
Sbjct: 64  ----------DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHI 113

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF  +L      GA  +ATGHY + +  +         +    D  +DQ YFL    + +
Sbjct: 114 KFGKMLDFILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDR 164

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-G 243
           L  + FP+GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK  + +     G A + G
Sbjct: 165 LNKIIFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAKKTG 224

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G ILGRH G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +
Sbjct: 225 NIVDRDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDEL 284

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASG 362
               +N       E   +D  +CF K RS        ++++ D   V F +     +  G
Sbjct: 285 IATRLNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPG 342

Query: 363 QACVFYTSDSNEARVLGGGIISG 385
           Q  VFY ++ N   V+ GG I  
Sbjct: 343 QGIVFYNNEGN---VIAGGFIER 362


>gi|320101712|ref|YP_004177303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Isosphaera pallida ATCC 43644]
 gi|319748994|gb|ADV60754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Isosphaera pallida ATCC 43644]
          Length = 401

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 198/385 (51%), Gaps = 20/385 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+AMSGGVDSSV A LLK  GYDV+G+ ++   +    ++R  +CC+  D  DA+ V 
Sbjct: 5   RVVLAMSGGVDSSVAAGLLKNQGYDVVGLFMRTGVHFDDPTRRAKTCCSQFDALDAQAVA 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +++  +  D+E  F   ++  F   Y  G TP PCV CN  +KF  L +  +++GAD 
Sbjct: 65  DRLDIPFHALDFEADF-GRIMEDFTEEYLRGRTPNPCVMCNIWLKFGKLWAYGKKVGADF 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       D   R  + R +D  +DQSY L    ++ L  +  P+G   KE +
Sbjct: 124 VATGHYARVVQ----DESGRPRIARGVDRAKDQSYVLSGVRREILQRMLLPVGGFTKEEI 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  AR+  L +  K+DSQ+ICF+    Y   ++     +   G++V  +G+++G H+G  
Sbjct: 180 RAKARDWNLPVHSKADSQEICFIPDHDYVKFIRERRPNLETAGEVVDESGRVVGTHDGYE 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQR+GL +A GEP +V+ +D    +V+VG R +L    +     NW  D      V
Sbjct: 240 GFTVGQRKGLKIAFGEPRYVIQIDPRRRQVVVGDRTALVKPGLIADRFNWHLDPPEPGQV 299

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND--------DGVYVDFEKSEVGVASGQACVFYTSDS 372
              ++   +IRS    VP  ++R +        + V V F + +  +  GQ    Y    
Sbjct: 300 ---WEVVAQIRSQHAGVPALLERLEPSARSEGGERVVVRFAEPQSAITPGQVVTLYD--- 353

Query: 373 NEARVLGGGIISGSKRSDAVEESLL 397
              RV+GGG I     +DA      
Sbjct: 354 CYERVVGGGWIERPLEADASTAPAK 378


>gi|282853930|ref|ZP_06263267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J139]
 gi|282583383|gb|EFB88763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes J139]
          Length = 366

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/381 (38%), Positives = 205/381 (53%), Gaps = 21/381 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +
Sbjct: 121 AVATGHYARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVN 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  +GL +ADK DS DICF+  G     +   +   + +G+I   +G ++G HNG 
Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGY 233

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            ++TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W     
Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCSGE- 292

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D    
Sbjct: 293 ----PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD---- 344

Query: 376 RVLGGGIISGSKRSDAVEESL 396
            V+G   I G+ R+    E  
Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365


>gi|296328692|ref|ZP_06871209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154291|gb|EFG95092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 362

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 198/376 (52%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D N  ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LKFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HY+ D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKNKLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK    +     G A   G+IV  NG
Sbjct: 172 VGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    +N 
Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++ D   V F +     +  GQ  VFY 
Sbjct: 292 FSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           +D N   V+ GG I  
Sbjct: 350 NDGN---VIAGGFIEK 362


>gi|85375520|ref|YP_459582.1| tRNA-specific 2-thiouridylase MnmA [Erythrobacter litoralis
           HTCC2594]
 gi|122543295|sp|Q2N6A6|MNMA_ERYLH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84788603|gb|ABC64785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/383 (47%), Positives = 237/383 (61%), Gaps = 21/383 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            DL +   + R+VVAMSGGVDSSVVAAL    G +VIG+TLQLY+   A+ RKG+CCAG 
Sbjct: 17  FDLPRPAAESRIVVAMSGGVDSSVVAALAHASGAEVIGITLQLYDYGAATGRKGACCAGD 76

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ DAR V D + ++HYVFD+E  FR  V+  FA  Y +G TP+PC+ CN   KF+DLL 
Sbjct: 77  DIQDARAVADRLGIAHYVFDHESAFREDVVEQFADDYLSGRTPVPCIRCNMGPKFTDLLR 136

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + R+LGAD LATGHY+R        G+    + R +D  RDQSYFL+ TT+ QL  LRFP
Sbjct: 137 MARELGADCLATGHYVRRVA-----GEHGPELHRALDPARDQSYFLYGTTETQLDFLRFP 191

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LGD+ K +VR+LA   GL  A K DSQDICFV  G Y  +VK +       GDIVH   G
Sbjct: 192 LGDLPKTAVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKTMRPEGGTPGDIVHAQTG 251

Query: 251 QILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           ++LG+H GI++YT+GQRRGL +    EPL+VV LD  +SRV VGP+  L V    + E N
Sbjct: 252 EVLGQHKGIVHYTVGQRRGLEIGGQPEPLYVVGLDAAASRVKVGPKRLLAVQAASVIETN 311

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGV--YVDFEKSEVGVASGQACV 366
            +G        +       K+RS   PVP+ +  +  DG    + FE+ E GVA GQA V
Sbjct: 312 RIG-------PLPDVPLTAKVRSLAKPVPITLDGSLGDGATTRITFEQPEFGVAPGQAGV 364

Query: 367 FYTSDSNEARVLGGGIISGSKRS 389
            Y  D    RV+GGG I  ++ +
Sbjct: 365 IYAGD----RVIGGGWIDSTESA 383


>gi|260494072|ref|ZP_05814203.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
 gi|260198218|gb|EEW95734.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
          Length = 362

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 201/376 (53%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F S Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLNKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250
           +GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK  + +     G A + G+IV  +G
Sbjct: 172 VGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKTGNIVDKDG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILGRH G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    +N 
Sbjct: 232 NILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++ D   V F +     +  GQ  VFY 
Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
            + N   V+ GG I  
Sbjct: 350 DEGN---VIAGGFIER 362


>gi|213962751|ref|ZP_03391012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sputigena Capno]
 gi|213954746|gb|EEB66067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sputigena Capno]
          Length = 397

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/405 (28%), Positives = 193/405 (47%), Gaps = 50/405 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  +GK+   +    D  +DQSYFL   +Q+QL    FP+G+++K  V
Sbjct: 121 VATGHYCR-KEEIEINGKKIYRLLSGKDENKDQSYFLCQLSQEQLSKALFPIGELQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+   L  ADK DSQ +CFV + +  + +++       +GDI+ +            
Sbjct: 180 RAIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQ--PKQGDIIEIPNDWKGYAEFDM 237

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284
                                  +G+ +G H G   +T GQR+GL      EPLF++  D
Sbjct: 238 LRLFETYEDELKYLSQRFVYQPEDGKKVGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETD 297

Query: 285 KNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + +  G       L    +++   + +W+ + L    V +  +  V+IR  Q     
Sbjct: 298 IEKNIIYTGQGHTHRGLFRSALFIATPDEHWIREDLAL-KVYESKEFMVRIRYRQPLQKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + +  +G+Y+ F + +  +  GQ   +Y+ D     ++G G+IS
Sbjct: 357 VLYKVKNGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397


>gi|88607883|ref|YP_505483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma phagocytophilum HZ]
 gi|123494742|sp|Q2GJG8|MNMA_ANAPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88598946|gb|ABD44416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma phagocytophilum HZ]
          Length = 378

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/383 (45%), Positives = 239/383 (62%), Gaps = 17/383 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           +    +L+SL   K P++  VVVAMSGGVDSSVVA LL + GY VIG T+QLY+S  AS 
Sbjct: 1   MINNLQLDSLVPGKRPEETTVVVAMSGGVDSSVVAVLLHKMGYKVIGATMQLYSSPNASS 60

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            K SCC   D+YDA++V  +    HYV +YEE FR  VI  F +SY AGETP+PC+ CN+
Sbjct: 61  GK-SCCGNADIYDAKKVAASFGFPHYVLNYEEVFRKEVIEDFVNSYKAGETPIPCIKCNQ 119

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           TVKF D+L + R +G DV+ATGHY+R     G+       +    D  +DQSYFLF+ T 
Sbjct: 120 TVKFRDMLKMARTIGGDVVATGHYVRRLEVEGE-----LQIWSGKDKNKDQSYFLFSMTL 174

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +QL  +RFPLG++ K  VR +A+ + +++ADK DSQDICFV +  Y   +  ++     +
Sbjct: 175 EQLKFVRFPLGNLVKGDVRKIAQYLNIEVADKPDSQDICFVPK-NYKKTLASLDPSAIKK 233

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           G I H++G +LG H+GI N+T+GQR+GLG+A   PL+VV LD   + VIVGP  SL   +
Sbjct: 234 GKIHHIDGSVLGEHDGIANFTVGQRKGLGIAYPYPLYVVALDPVKNTVIVGPSSSLVKTQ 293

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVA 360
           ++LR++NWL     +     G    V++RSS   V   + R+  D    V   +  V V+
Sbjct: 294 LFLRDLNWLS---KDQIPEHGLSASVRLRSSSSAVQATISRSAKDGKGRVVLHEGCV-VS 349

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQACV Y ++    R+LGGG I
Sbjct: 350 PGQACVIYDNE----RLLGGGWI 368


>gi|237741734|ref|ZP_04572215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|294785652|ref|ZP_06750940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
 gi|229429382|gb|EEO39594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|294487366|gb|EFG34728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
          Length = 362

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 199/376 (52%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ + N  +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D    F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA++MG+ +  K DSQ+ICFV  GK    +     G A   G+IV  NG
Sbjct: 172 VGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  DK ++ +IVG  E L    +    +N 
Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++++   V F +     +  GQ  VFY 
Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDENNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
            + N   V+ GG I  
Sbjct: 350 DEGN---VIAGGFIER 362


>gi|311746884|ref|ZP_07720669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Algoriphagus sp. PR1]
 gi|126578570|gb|EAZ82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Algoriphagus sp. PR1]
          Length = 403

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/408 (30%), Positives = 198/408 (48%), Gaps = 53/408 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV +SGGVDSSV A LL   GY+VIG+ ++ ++    +     C   +D  DA  V
Sbjct: 4   KPRVVVGLSGGVDSSVAAHLLLEQGYEVIGMFMKNWHDESVT-ISNECPWMEDSTDAMLV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +     D  E +R  ++      Y AG TP P + CNR +KF   L   ++L AD
Sbjct: 63  AEKLGIPFQAIDLSEEYRERIVDYMFGEYKAGRTPNPDILCNREIKFDIFLKAAQKLKAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY + +  +  DGK    +    D  +DQSYFL    Q+QL    FP+G ++K  
Sbjct: 123 FVATGHYCQ-KGEIEVDGKPVYQLLAGADPNKDQSYFLCQLDQEQLSKALFPIGHLQKPE 181

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248
           VR +A+E+ L  ADK DSQ +CF+ + +  D +++       +G I+ +           
Sbjct: 182 VRKIAKELDLITADKKDSQGLCFIGKVRLPDFLQQQLK--PKKGRIIQIPEDLEIYKSQK 239

Query: 249 ---------------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFV 280
                                       G++LG HNG   +T+GQR+GL     G+PLFV
Sbjct: 240 IPVGVAAEDLDLEDLEAISLPLHYRPEEGKVLGEHNGAHYFTVGQRKGLNVGGTGKPLFV 299

Query: 281 VYLDKNSSRVIVG---PRESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQD 335
           +  D   + +  G       L  + ++++E  I+W+ + L +  V +  +   +IR  Q 
Sbjct: 300 ISTDTKENVIYTGLGETHPGLLRNGLFVKEDQIHWIREDL-KLQVGESARYKARIRYRQP 358

Query: 336 PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
                + R + G++V F++++ GVASGQ   +Y  + +    +G G I
Sbjct: 359 LTWATLIRKEKGLFVIFDQAQKGVASGQFVAWYDENES----IGSGTI 402


>gi|153005212|ref|YP_001379537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. Fw109-5]
 gi|205811178|sp|A7HCV7|MNMA_ANADF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152028785|gb|ABS26553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 349

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/363 (42%), Positives = 205/363 (56%), Gaps = 15/363 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV+VA+SGGVDSS  AALL  +G+DVIGV++++ +   A +R  SCCA  D+ DAR   
Sbjct: 1   MRVLVALSGGVDSSTAAALLVAEGHDVIGVSMRVADYSDA-RRGRSCCAPDDLEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  YV + E RFR  VI PF   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLDIPFYVANVEARFRERVIEPFVRDYVEGRTPNPCVACNSDVKFDWLLARARALGA-K 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R     G     R  +CR  D  +DQ+YFL+   Q+ L D+ FP+GD+ K  V
Sbjct: 119 LATGHYARVERRGG-----RFALCRAGDPAKDQTYFLYGLGQEALRDVLFPVGDLAKRDV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A+K++SQ+ICFV QG   D V     G    G+IV   G++LGRH+G+ 
Sbjct: 174 RAVAAQAGLPNAEKAESQEICFVTQGDAGDFVALRAPGSVRAGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV L+  ++RV+VG        R  + E+ W+        V
Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLEPGTARVVVGSAGEASRDRFAVTEVRWIAGAPPPRPV 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                  VK+R   +     V  +  G  V   +   GVA GQA VFY  D     VLGG
Sbjct: 294 A----ARVKVRHRHEGEEGTVTPDGGGGQVRLARPVRGVAPGQAAVFYDGD----EVLGG 345

Query: 381 GII 383
           G I
Sbjct: 346 GRI 348


>gi|187250509|ref|YP_001874991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Elusimicrobium minutum Pei191]
 gi|186970669|gb|ACC97654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Elusimicrobium minutum Pei191]
          Length = 354

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 198/373 (53%), Gaps = 28/373 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDVYDA 76
           M+++V +SGGVDSS+ AALLK  GY+V G T+ +++    +    +        +D+  A
Sbjct: 1   MKILVGLSGGVDSSLTAALLKDKGYEVTGATMSIWDPSLPTPATPNNACLGPEEEDIKTA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V   I +  +V D  E ++  VI  F   Y  G TP PC+ CN  +KF  L +  ++ 
Sbjct: 61  SAVAKEIGIGFHVIDCREEYKKIVIENFKDEYKKGRTPNPCIWCNSFIKFGALPASAKKQ 120

Query: 137 G--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G   D  ATGHY R    + ++   R  + + +D  +DQ+YFL+  TQ+QL +  FPLG+
Sbjct: 121 GVIFDKFATGHYAR---IIFNEETGRYQLRKALDEAKDQTYFLYRLTQKQLSETLFPLGE 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             K+ VR LA+E  L  A+K+DSQD  C    G Y D+++      A  G IV   G +L
Sbjct: 178 YTKKQVRALAKEKNLLAAEKADSQDFYC----GDYNDILQF----SAQPGSIVDKEGNVL 229

Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G+H+GI NYTIG+R+G+G+    EP++V+ L    + V+VG ++ L    +   EINW  
Sbjct: 230 GKHDGIWNYTIGKRKGVGISGAKEPMYVIELLPKQNLVVVGTKKDLYKDVLTASEINW-- 287

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
                +   +  K   KIR    P    +     +   V F++ ++ + +GQ+ VFY  D
Sbjct: 288 --GSVEEPKEPVKVQAKIRQMHTPSNATLTPLPGNRAEVKFDEPQMSITAGQSVVFYQGD 345

Query: 372 SNEARVLGGGIIS 384
                VLGGGII 
Sbjct: 346 I----VLGGGIID 354


>gi|284052528|ref|ZP_06382738.1| tRNA-specific 2-thiouridylase MnmA [Arthrospira platensis str.
           Paraca]
 gi|291571991|dbj|BAI94263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Arthrospira platensis NIES-39]
          Length = 359

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/375 (36%), Positives = 204/375 (54%), Gaps = 30/375 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++VV +SGGVDSS  AA+L   GY+V+G+TL L       + KG CC+   V DA  +C
Sbjct: 2   QKIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCSEGMV-DAAHIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
           + + + HY+ D  + F+  +I      Y AG TPLPC  CNR VKF  +L     +L  +
Sbjct: 55  EQLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNIN 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       D   R  + R +D  +DQSYFL+  TQ  L  + FPLG++ K  
Sbjct: 115 RIATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDILGAVVFPLGEVPKSE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A +  L  ADK +SQD+C V+  G     + +   G   +G+IV   G++LG H+G
Sbjct: 172 TRRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDPEGRVLGEHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQRRGLG++  EPL+V+ +D   +RV+VG R+ +      +R +NW+       
Sbjct: 230 IHHYTIGQRRGLGISAPEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIA---- 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
              +  +  V+IR    P+PV V         +    V + F++   G+  GQA V+Y+ 
Sbjct: 286 PPSEPIRAEVQIRYRSKPLPVTVVPLSSEPDPQIGTRVRLIFDEPIFGITPGQAAVWYSE 345

Query: 371 DSNEARVLGGGIISG 385
           D     +LGGG+I  
Sbjct: 346 D----LLLGGGVIER 356


>gi|73920128|sp|Q72Q44|MNMA_LEPIC RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 375

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/384 (36%), Positives = 213/384 (55%), Gaps = 13/384 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
              +++VAMSGGVDS+V A LL  DGY+VIGV L+ +          K SCC+ +D+ DA
Sbjct: 2   SKGKIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V  ++ +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + L
Sbjct: 62  RDVGISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKAL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R           R  +   +D+ ++Q+Y+L+  +Q+ L ++ FPLG+M 
Sbjct: 122 GIDKIATGHYARIARN-----GERYAIANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMT 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +AR MGL +ADKS+SQ+ICF+ +  Y   +++ N      G     +G+I+G+H
Sbjct: 177 KPEVRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKN-VEFTPGFFKLKDGRIVGKH 235

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G  N+TIGQR+GLG+A   PL+V+ ++ +   VI+G           + ++N+ G    
Sbjct: 236 KGRENFTIGQRKGLGIAWKNPLYVISIE-DDGSVILGEENETYNESFSVIDLNFQGLAPL 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +   +  +C V++R    P+   + +  +G+ V   +   GV  GQ+ VFY  DS+   
Sbjct: 295 NEG--ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--Y 350

Query: 377 VLGGGIISGSKRSDAVEESLLSVI 400
           +L GGIIS       V E  +SV+
Sbjct: 351 LLLGGIISKGSIQMRVAEPAISVL 374


>gi|86140336|ref|ZP_01058895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832278|gb|EAQ50727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leeuwenhoekiella blandensis MED217]
          Length = 399

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/407 (28%), Positives = 188/407 (46%), Gaps = 52/407 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C    D  DA  V 
Sbjct: 2   KTVVVGLSGGVDSSVSAYLLKEAGYNVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E+++  ++      Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSEQYKERIVDYMFWEYEMGRTPNPDVLCNREIKFDVFMKIALDLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R     DGK    +    D  +DQSYFL   +Q+QL    FP+G ++K  V
Sbjct: 121 VATGHYCQ-RGETEIDGKPVYQLLAGADANKDQSYFLCQLSQEQLAKTLFPIGHLQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+   L  A+K DSQ +CF+ + +  D +++       EG IV +            
Sbjct: 180 RKIAKAQDLVTAEKKDSQGLCFIGKVRLPDFLQQKLK--PKEGVIVEIPAERAQEKINDF 237

Query: 249 -------------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVY 282
                                     G+++G+H G   +T GQR+GL      EPLFV+ 
Sbjct: 238 QEANDSDVAVTDVAVLAKKPKYSIAEGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVID 297

Query: 283 LDKNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337
            D   + +  G       L    +++   E++++ + L      +  +   +IR  Q   
Sbjct: 298 TDVEENVIYTGQGKNHPGLLRSALFVQEDEVHYIREDLKLQE-GEVVETKARIRYRQPLE 356

Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             ++ + +DG++V FE  +  ++ GQ   +Y  D      LG G+IS
Sbjct: 357 KAWLHKVEDGLFVSFENPQSAISEGQFVAWYDGD----ECLGSGVIS 399


>gi|21672533|ref|NP_660600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009493|sp|Q8K9Q8|MNMA_BUCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21623156|gb|AAM67811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 367

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K+ +V++AMSGGVDSSV A  LK + Y V G+ ++ +        K  C A +D+ DA 
Sbjct: 3   KKNKKVIIAMSGGVDSSVSAWFLKNENYQVEGLFMKNWEEDD---EKEYCNAAKDLSDAE 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQL 136
            VC  +N+  +  ++ + +   V   F + +  G+TP P + CN+ +KF    +   ++L
Sbjct: 60  EVCKKLNIHLHKVNFSKEYWEKVFENFLNEHKKGKTPNPDILCNKEIKFKIFFNYAIQEL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +D +ATGHY + +   G     +  + + +DL +DQSYFL+     QL ++ FP+G +K
Sbjct: 120 QSDYIATGHYAQIKKKNG-----KYFLLKAVDLNKDQSYFLYTLKGIQLKNILFPIGGLK 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A+++GL +A+K DS  ICF+   K  + + R     A +GDI+   G I+G+H
Sbjct: 175 KSQVRIIAKKIGLKVAEKKDSTGICFIGPKKINNFLNRYIK--AEKGDIITTEGTIVGKH 232

Query: 257 NGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           NG+  YT+GQR+GLG+   +     P +V+  +  ++ +I+      + L    +   +I
Sbjct: 233 NGLFCYTLGQRKGLGIGGIKGNYNIPWYVIEKNIINNTLIIAQGSCNKRLMSIGLIAEKI 292

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NW+ D    D ++  F C  KIR  Q  +   ++  +D  + V F+     V  GQ+ VF
Sbjct: 293 NWIND----DKIIFPFSCQAKIRYRQIDIFCNIKYINDFLIKVLFDSPVSSVTPGQSIVF 348

Query: 368 YTSDSNEARVLGGGIISG 385
           Y    +    LGGG+I  
Sbjct: 349 Y----SSKICLGGGVIQS 362


>gi|312891399|ref|ZP_07750916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296093|gb|EFQ73245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
          Length = 362

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 18/370 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++ ++  S   + ++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGTNTKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D    F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RALAVGYGFPHYILDIRSEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R +       R ++ + +D  +DQSY L+  +Q+ L   RFPLG   
Sbjct: 123 DCEFIATGHYANIRQHD----NGRYVISKGLDQNKDQSYVLWGVSQRNLARTRFPLGSFA 178

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A++MG L++A+KS+S +ICFV    Y   ++     +      G+ V  +G +
Sbjct: 179 KAEIRQMAKDMGQLELANKSESYEICFVPDNDYRSFLRHKVGDLEERVSGGNYVLTDGTV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A+G+P+FV  +   S+ V++G  E LE    ++R +N + 
Sbjct: 239 VGKHQGYPFYTIGQRKGLGIALGQPMFVTQILPESNTVVLGTAEDLERREAWVRNLNLI- 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                + + +  +   KIR     +   + +  + + VDF  S  G+A GQ+ VFY  D 
Sbjct: 298 ---KYETITEPIEATTKIRYKDAGMLSNIVQIGEHMKVDFHHSVSGIAPGQSAVFYEGDD 354

Query: 373 NEARVLGGGI 382
               +LGGG 
Sbjct: 355 ----LLGGGF 360


>gi|300774572|ref|ZP_07084435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506387|gb|EFK37522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
          Length = 395

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/403 (27%), Positives = 193/403 (47%), Gaps = 47/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV +SGGVDSSV A LL++ G++V+ + ++ +N    +     C   +D  DA  V 
Sbjct: 1   MKIVVGLSGGVDSSVTAYLLQQQGHEVVALFMRNWNDASVTLED-ECPWIEDSNDALMVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E ++  ++    + Y  G TP P V CNR VKF   +     LGAD 
Sbjct: 60  QKLGIPFQVIDMSELYKERIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTAMSLGADK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++GK    +    D  +DQSYFL   +Q QL    FP+G++ K  V
Sbjct: 120 VATGHYARVTSTFDENGKEIFHLLAGKDNNKDQSYFLCQLSQDQLSKALFPIGELTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R++A+E+GL  ADK DSQ +CF+ +      +++       EG+IV +            
Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPQFLQQQLK--PNEGEIVEIFKDSPLFSEEKP 237

Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286
                                +G+++G+H G   +TIGQ +GLG+    E  F++  D  
Sbjct: 238 EFSSKEEELEYLSRKINYKKSDGKVIGKHQGAQFFTIGQSKGLGIGGHKESCFIISRDME 297

Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           ++ + VG       L    + +   E++W+ + +      +  +   + R  Q      +
Sbjct: 298 NNILFVGEGSHFPGLHKKALKIDNSELHWVREDMKLQN-GESMEVMARFRYRQPLQKATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + ++  Y++F++ +  +A GQ   +Y  +     ++G G+IS
Sbjct: 357 YQFENAFYIEFDELQSAIAEGQFASWYIDE----ELIGSGVIS 395


>gi|209528181|ref|ZP_03276652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrospira maxima CS-328]
 gi|209491390|gb|EDZ91774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrospira maxima CS-328]
          Length = 359

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/375 (36%), Positives = 204/375 (54%), Gaps = 30/375 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++VV +SGGVDSS  AA+L   GY+V+G+TL L       + KG CC+   V DA  +C
Sbjct: 2   QKIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCSEGMV-DAAHIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
           + + + HY+ D  + F+  +I      Y AG TPLPC  CNR VKF  +L     +L  +
Sbjct: 55  EQLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNIN 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       D   R  + R +D  +DQSYFL+  TQ  L  + FPLG++ K  
Sbjct: 115 HIATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDLLAGVVFPLGEVPKSE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +A +  L  ADK +SQD+C V+  G     + +   G   +G+IV   G++LG H+G
Sbjct: 172 TRRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDTEGRVLGEHDG 229

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I +YTIGQRRGLG++  EPL+V+ +D   +RV+VG R+ +      +R +NW+       
Sbjct: 230 IHHYTIGQRRGLGISAAEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIA---- 285

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
              +  +  V+IR    P+PV V         +    V + F++   G+  GQA V+Y+ 
Sbjct: 286 PPSEPIRAEVQIRYRSKPLPVTVVPLSSEADPQIGSRVRLIFDEPIFGITPGQAAVWYSE 345

Query: 371 DSNEARVLGGGIISG 385
           D     +LGGG+I  
Sbjct: 346 D----LLLGGGVIER 356


>gi|218682213|ref|ZP_03529814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli CIAT 894]
          Length = 294

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 189/294 (64%), Positives = 232/294 (78%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+   A  R GSCC
Sbjct: 1   MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           AGQD+ DARRVC+T+ + HYV DYE+RFR  VI PFA SY AGETP+PCV CN+TVKF+D
Sbjct: 61  AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL+  ++LGAD LATGHYIRSR     D   RR + RP D +RDQSYFLFATTQ+Q+  L
Sbjct: 121 LLATAKELGADALATGHYIRSRPNPLADKPGRRALFRPADADRDQSYFLFATTQEQIDYL 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           RFPLG + K   R LA EMGL +A K+DSQDICFV QGKY D++ ++    AL G+IVHL
Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
           +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD  S RVIVGP+E+LE HR
Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHR 294


>gi|256845062|ref|ZP_05550520.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|256718621|gb|EEU32176.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
          Length = 362

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 199/376 (52%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ + N  +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D    F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA+++G+ +  K DSQ+ICFV  GK    +     G A   G+IV  NG
Sbjct: 172 VGDLEKTKLRELAKQIGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  DK ++ +IVG  E L    +    +N 
Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++ +   V F +     +  GQ  VFY 
Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           ++ N   V+ GG I  
Sbjct: 350 NEGN---VIAGGFIER 362


>gi|19704100|ref|NP_603662.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81479855|sp|Q8R5X3|MNMA1_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|19714304|gb|AAL94961.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 362

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 197/376 (52%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D N  ++RV VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LKFDSNNSNIRVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HY+ D  + F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRYIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                 A  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKDASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKNKLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK    +     G A   G+IV  NG
Sbjct: 172 VGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    +N 
Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++ D   V F +     +  GQ  VFY 
Sbjct: 292 FSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           +D N   V+ GG I  
Sbjct: 350 NDGN---VIAGGFIEK 362


>gi|238809910|dbj|BAH69700.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 382

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 178/382 (46%), Gaps = 35/382 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69
           N    +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S   +   G+       C  
Sbjct: 10  NMHKKKVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQ 69

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            QD  DA  V + + +  +  D+ + + + V   F   Y  G TP P + CN+ +KF   
Sbjct: 70  EQDYQDALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAF 129

Query: 130 LSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L     +L AD +A GHY + +     +GK    + R  D  +DQ+YFL   T QQL  +
Sbjct: 130 LKYAFEKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKV 180

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
             PL D  KE +R +A+++ L  A K DS  ICF+ +  +   ++      A +G I+ +
Sbjct: 181 LMPLADYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQNYIP--AQKGKILDI 238

Query: 249 -NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES---LEVHRI 303
              ++LG H+G   YTIGQR+GL +    E  +V   D  ++ +   P      LE + +
Sbjct: 239 KTKEVLGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPSYLESNML 298

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASG 362
               +             +  K   K R  Q  + V V+   ++ + V +      V  G
Sbjct: 299 IASNL------CLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPG 352

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q  V Y  D    + LGG II 
Sbjct: 353 QQVVLYDQD----KCLGGAIIE 370


>gi|34763143|ref|ZP_00144111.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887172|gb|EAA24275.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 362

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 199/376 (52%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ + N  +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D    F+  V+  F + Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+LA++MG+ +  K DSQ+ICFV  GK    +     G A   G+IV  NG
Sbjct: 172 VGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  DK ++ +IVG  E L    +    +N 
Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++ +   V F +     +  GQ  VFY 
Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
           ++ N   V+ GG I  
Sbjct: 350 NEGN---VIAGGFIER 362


>gi|15606458|ref|NP_213838.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
 gi|6226257|sp|O67274|MNMA_AQUAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2983672|gb|AAC07238.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
          Length = 356

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/372 (38%), Positives = 212/372 (56%), Gaps = 20/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARR 78
           MRV V MSGGVDSSV A LLK  G+DVI VTL+ +   + + ++    CC+ +DV DA R
Sbjct: 1   MRVAVGMSGGVDSSVTALLLKEQGHDVIRVTLRFHTVEACEVNETHNVCCSPKDVQDASR 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V   + + H VF +EE F++ VI  F   Y  G TP PC  CNR VK        +Q+  
Sbjct: 61  VAKRLGIPHLVFSWEEIFKSKVIDYFVEEYKRGRTPNPCALCNREVKTGFFARYLKQVAD 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LATGHY +    + +D K   ++ RP D +RDQ+YFL    ++ L  L FPLG   K
Sbjct: 121 IDKLATGHYAK----IEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR++A+  GL++A K DSQ++CF+      + ++ I       G I H++G++LG H 
Sbjct: 177 EEVREIAKRYGLEVAQKRDSQEVCFLMGKSPGEYLEGILGK--QRGLIKHVSGKVLGEHE 234

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YTIGQRRGLG++ G+P++V+ +D  ++ +IVG  E L   ++ ++EIN+       
Sbjct: 235 GVYRYTIGQRRGLGISYGKPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEINFHV----- 289

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +        +IR    PVPV  +++ ++G  V F++   G+  GQ   FY  D     
Sbjct: 290 -PLEKWENVSAQIRYRHKPVPVERIEKTEEGFLVKFKEDVRGITPGQVVAFYDGDV---- 344

Query: 377 VLGGGIISGSKR 388
           +LGGGII  S +
Sbjct: 345 LLGGGIIEESVK 356


>gi|291514578|emb|CBK63788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alistipes shahii WAL 8301]
          Length = 399

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 124/403 (30%), Positives = 186/403 (46%), Gaps = 45/403 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ +SGGVDSSV A LLK  G++V+G+ +  ++    +   G C    D   A  V  
Sbjct: 3   RVVIGLSGGVDSSVAAWLLKEQGHEVVGLFMINWHDTTGTLE-GDCPWHDDRVFAELVAR 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +V D    +R  V+    + Y  G TP P V CNR +KF   L    +LGAD +
Sbjct: 62  KLDIELHVVDLSADYRTRVVDYMFAEYERGRTPNPDVLCNREIKFDVFLREALKLGADYV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DG+    +    D  +DQSYFL   +Q+QL    FP+G + K  VR
Sbjct: 122 ATGHYCRKAEETLPDGRTIHKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGGLLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV-------------------KRINAGIALE 242
            +A E GL  A + DSQ ICFV +      +                   K +   +  E
Sbjct: 182 RIAEEQGLATAKRKDSQGICFVGKVDLPTFLQQKLAPKKGNIHEILPTWPKYVREEVPAE 241

Query: 243 GDIVH--------------LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNS 287
           G+                  +G+ +G HNG   YTIGQR+GLG+    E LF++  D   
Sbjct: 242 GEPTTGQLAALAEPWRYTVRDGKKIGEHNGAHYYTIGQRKGLGIGGRRESLFILATDTVQ 301

Query: 288 SRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + + VG       L    +++   EI+W+     E       +  V+IR  Q      + 
Sbjct: 302 NVIWVGEGDAHPGLWRPALHIAPGEIHWVNPA-RELTAGQSARFSVRIRYRQLLQGARLF 360

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             D+G Y+ F++ + G+  GQ   +Y  D    +++G G+I G
Sbjct: 361 VRDEGAYLVFDRPQRGITPGQFAAWYDGD----QLVGSGVIEG 399


>gi|253582177|ref|ZP_04859400.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC
           27725]
 gi|251835716|gb|EES64254.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC
           27725]
          Length = 362

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/375 (37%), Positives = 210/375 (56%), Gaps = 31/375 (8%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  D+N ++  + VAMSGGVDSS VA LLK+ GY+V G+T++              C  +
Sbjct: 15  LMYDENNQNTTIAVAMSGGVDSSTVAYLLKKQGYNVFGITMK-------------TCKPE 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA++VCD + + +Y+ D  + F+  V+  F   Y  G+TP PC+ CN+ +K   L+ 
Sbjct: 62  D-SDAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLID 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R  GAD +ATGHY + +     DG    I+    D  +DQ YFL    ++ L  L+FP
Sbjct: 121 FARSKGADFMATGHYTQMK-----DG----ILSMGDDAGKDQVYFLSQMKKENLKYLKFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +G+++K  VR+LA+ +G+ +  K DSQ+ICFV+ GK  + +  +  G A   G+IV  NG
Sbjct: 172 IGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMTDGKAGKPGNIVDTNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           +ILG+H G+  YTIGQR+GLG+A   PL+V+ LD   + V+VGP E L    +    IN 
Sbjct: 232 KILGKHKGLSFYTIGQRKGLGIAQENPLYVIELDSKRNCVVVGPNEMLFKDNLIAENINL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE-VGVASGQACVFY 368
           +     ++  +D  +C+ K RS        ++   +G + V+F  ++   V  GQ  VFY
Sbjct: 292 ISLNNIKE--LDEMECWAKTRSRDQLHKCKLEVLSNGNIKVNFIGNQVRAVTPGQGVVFY 349

Query: 369 TSDSNEARVLGGGII 383
             D    +VLG G I
Sbjct: 350 DKD---HKVLGSGFI 361


>gi|78186206|ref|YP_374249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium luteolum DSM 273]
 gi|123583498|sp|Q3B625|MNMA_PELLD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78166108|gb|ABB23206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium luteolum DSM 273]
          Length = 367

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 194/376 (51%), Gaps = 27/376 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V+V +SGGVDSSV A +L R+GY+V+G+ L++      S                 
Sbjct: 4   KKKKVIVGLSGGVDSSVAACMLVREGYEVLGLHLKVLQEGDGSTVLEPSPMTISSR---- 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +  ++  +  +   RFRN V+  F   Y A  TP PC+ CN+T+K+  LL    QLGA
Sbjct: 60  --EEFHIPVFTLNLAARFRNEVMDYFKEEYLAARTPNPCMVCNKTIKWRGLLEGAAQLGA 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY R+    G     R  +   +D ++DQSYFL+   Q++L     PLG + K 
Sbjct: 118 DMVATGHYARTAFIDG-----RHRLFAGLDRKKDQSYFLWMLAQEELSRTILPLGGLTKP 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
            VRDLAR  GL  A+K +SQ+ICFV    Y   ++    G+      G+I+  +GQ++G 
Sbjct: 173 EVRDLARSFGLTAAEKKESQEICFVPDDDYGSYLESAVPGLHRRVEGGEILDPSGQVIGH 232

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQRRGLG A GEPL+V  +D   + V  GP+ +L    + +  +NW+G   
Sbjct: 233 HKGYPFYTIGQRRGLGTATGEPLYVTAIDPIGNLVHTGPKSALFSTSVEVSHLNWIGI-- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTS 370
             D      +   KIR      P  +     G       + F++ +  +  GQA VFY  
Sbjct: 291 --DPPFAPMEATAKIRYRDHASPCTIIPLGPGPTGVTARIMFKEPKSALTPGQAAVFYRG 348

Query: 371 DSNEARVLGGGIISGS 386
           +     VLGGGII G+
Sbjct: 349 E----EVLGGGIIEGA 360


>gi|162447421|ref|YP_001620553.1| tRNA-specific 2-thiouridylase MnmA [Acholeplasma laidlawii PG-8A]
 gi|205810979|sp|A9NFP7|MNMA_ACHLI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161985528|gb|ABX81177.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Acholeplasma laidlawii PG-8A]
          Length = 375

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/386 (29%), Positives = 181/386 (46%), Gaps = 33/386 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V++ +SGGVDSSV A +L + GYDV  V ++ ++S      +G+       C   +D
Sbjct: 2   KKKVLIGLSGGVDSSVAALILLQQGYDVEAVFMRNWDSATNMDFRGNPTLYDETCEQEKD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA +V + + +  +  D+   + + V   F   Y    TP P V CN  +KF   +  
Sbjct: 62  YQDALKVANKLGIKLHRVDFIHEYWDRVFSYFIDEYEKNRTPNPDVLCNNEIKFKAFIDY 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + +   D +A GHY +      D       + R +D  +DQ+YFL     +QL ++ FP+
Sbjct: 122 SEKFKPDYIAMGHYAQI-----DHTGDEPKLIRAVDSNKDQTYFLSQLKTEQLRNVLFPI 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G++ K  VR +A+E  L  ADK DS  ICF+ +  + + +       A EGD+  L+G  
Sbjct: 177 GNLPKSEVRRIAKEHDLATADKKDSTGICFIGERHFNEFLLNYLP--AKEGDMRRLDGTF 234

Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
           + RH G++NYTIGQR+GLG+       +  FVV  D +++ + V P      L      +
Sbjct: 235 IKRHFGLMNYTIGQRKGLGIGGTTDTTDAWFVVGKDLSTNTLYVEPGFEHPYLYSDEALI 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
            E+ W        A  DG K   K R  Q+   V ++  +D+   V + +    V  GQ 
Sbjct: 295 TEVKW------RGAKRDG-KFTAKFRYRQEDQDVEIKWIDDETFKVFYPQKIRAVTPGQV 347

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390
           C  Y  +      +G G IS      
Sbjct: 348 CAIYEDEV----CVGSGFISVVYNEG 369


>gi|171920850|ref|ZP_02932016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185178984|ref|ZP_02964738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024081|ref|ZP_02996823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518246|ref|ZP_03003776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524394|ref|ZP_03004420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198273769|ref|ZP_03206303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554475|ref|YP_002284838.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550854|ref|ZP_03771803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551575|ref|ZP_03772521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|229487425|sp|B5ZBP8|MNMA_UREU1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171903054|gb|EDT49343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209268|gb|EDU06311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188019125|gb|EDU57165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998055|gb|EDU67152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195660126|gb|EDX53506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198249524|gb|EDY74306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541976|gb|ACI60205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225379390|gb|EEH01755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225380008|gb|EEH02370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 380

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 195/384 (50%), Gaps = 35/384 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQD 72
             RVV+ +SGGVDSSV A LLK+ GY+VIG+ +  ++       +R++ K+   C +  D
Sbjct: 6   KKRVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELD 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V   I +  Y  ++ + + N V   F S Y    TP P + CN+ +KF   L+ 
Sbjct: 66  YQDAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNY 125

Query: 133 TR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + +L AD +A GHY + +            + +  D+ +DQ+YFL    Q QL +  FP
Sbjct: 126 AKNELKADYIAMGHYAKVKH-----TNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFP 180

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           +GD+ K+ VR +A+E GL  A+K DS  ICF+ +  +   ++         G+IV+ +N 
Sbjct: 181 IGDLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYFLENYIPN--QPGEIVNIVNN 238

Query: 251 QILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYL 305
           QI+G H G + YTIGQR+GL    M E +FV   D N   + V P     + L  ++  +
Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSPLSLEDQYLISNQALV 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASG 362
             +N++     +  +       V+ R  Q+ V V       N + V +++ +    +  G
Sbjct: 299 ENMNFIEPYNPQIPI------SVRFRHRQNLVVVNSFLCIENTNNVLINY-EPAKAITPG 351

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           Q  VFY +D      +GGG+I+ +
Sbjct: 352 QYAVFYQND----HCIGGGVIAQT 371


>gi|327273596|ref|XP_003221566.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Anolis carolinensis]
          Length = 417

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/388 (29%), Positives = 185/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV A+SGGVDS+V A LL+R GYDV GV ++ ++       KG C A +D  DA RVC+
Sbjct: 6   RVVCALSGGVDSAVAAVLLRRRGYDVTGVFMKNWDIAD---EKGVCSADKDCDDAYRVCE 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +N+  +   Y + + N V     + Y  G TP P + CN+ +KF+        +LGAD 
Sbjct: 63  ILNIPFHQVSYVKEYWNDVFSYLLNEYELGRTPNPDIICNKYIKFNYFFHYAVDKLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLGDNEVFQQKYIQRPKGLFRNRFEIRNTVKLLQAADQFKDQTFFLSQISQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           + L    FPLGD+ K+ V+ +A E  L  +  + +S  ICF+ +  +   +         
Sbjct: 183 EALRRTIFPLGDLTKDFVKKIAAEHHLHHVLQRKESMGICFIGERNFEKFILEYLE--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G+ V + + +++G H G   YT+GQR  +   + +  FVV  +  S  V V P     +
Sbjct: 241 PGNFVSIEDDKVIGSHKGWFLYTLGQRARIS-GLKDAWFVVDKNTASGDVFVAPSTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +    + + D   +C  + +     VP  +  N DG V+V     
Sbjct: 300 LYRSLLRTNRVHWIAEEPPAELIRDKMMECNFRFQHQMALVPCTLTLNQDGTVWVTLVTP 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +  GQ  VFY  D    + LG G I
Sbjct: 360 LRALTPGQFAVFYKGD----KCLGSGKI 383


>gi|314966673|gb|EFT10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL082PA2]
 gi|314981402|gb|EFT25496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA3]
 gi|315092068|gb|EFT64044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA4]
 gi|315103674|gb|EFT75650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL050PA2]
 gi|327327498|gb|EGE69274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL103PA1]
          Length = 396

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 204/380 (53%), Gaps = 21/380 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ AMSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  
Sbjct: 32  KVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAA 91

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D 
Sbjct: 92  DRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDA 151

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +V
Sbjct: 152 VATGHYARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNV 206

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A  +GL +ADK DS DICF+  G     +   +   + +G+I   +G ++G HNG  
Sbjct: 207 RQEAAALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGYH 264

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           ++TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W      
Sbjct: 265 HFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCSGE-- 322

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     
Sbjct: 323 ---PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----L 375

Query: 377 VLGGGIISGSKRSDAVEESL 396
           V+G   I G+ R+    E  
Sbjct: 376 VVGSATICGTDRAGVKAEQA 395


>gi|325103525|ref|YP_004273179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter saltans DSM 12145]
 gi|324972373|gb|ADY51357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter saltans DSM 12145]
          Length = 362

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 18/370 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++ ++  S  A+ ++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGANSKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D    F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RSLAVGYGFPHYILDIRNEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R         R ++ +  D  +DQSY L+  +Q+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRQQD----NGRYVISKGRDENKDQSYVLWGVSQENLARTKFPLGSFT 178

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A +MG + +A KS+S +ICFV    Y   +K     +  +   GD V ++G  
Sbjct: 179 KAEIRQMAFDMGQEDLAKKSESYEICFVPDNDYRSFLKHRVPELEADVAGGDFVLVDGTK 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A+G+P+FV  +   S+ V++G    L+     +R +N + 
Sbjct: 239 VGKHQGYPFYTIGQRKGLGIALGKPMFVTQILPESNTVVLGEEADLQRREATVRNLNLIK 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 ++ +  +   KIR         + +  D + V+F  S  G+A GQ+ VFY  + 
Sbjct: 299 YA----SINEPLEAITKIRYKDPGTLSHIHQEGDIMKVNFHHSVTGIAPGQSAVFYEGND 354

Query: 373 NEARVLGGGI 382
               +LGGG 
Sbjct: 355 ----LLGGGF 360


>gi|37520120|ref|NP_923497.1| tRNA-specific 2-thiouridylase MnmA [Gloeobacter violaceus PCC 7421]
 gi|73920124|sp|Q7MBC9|MNMA_GLOVI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|35211112|dbj|BAC88492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Gloeobacter violaceus PCC 7421]
          Length = 357

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/372 (38%), Positives = 210/372 (56%), Gaps = 24/372 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V A+SGGVDSSV AAL+++ GY V GVTL L       + KGSCC+   + DA RVC+
Sbjct: 6   KIVAALSGGVDSSVAAALVRKQGYRVCGVTLWLM------RGKGSCCS-DGMKDAARVCE 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++ H++ D  ++F   ++      Y  G TPLPC  CN+ +KF  LL   R +LG   
Sbjct: 59  QLDIPHHIVDIRQQFEETIVDFLVEGYREGITPLPCSRCNKELKFGLLLEYARRKLGIGT 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R+     D    R  + R +D  +DQSYFL+  +Q+QL    FPLG+M K+  
Sbjct: 119 VATGHYARTGF---DGQTGRHWLARAVDRTKDQSYFLYDLSQEQLASAVFPLGEMTKDQT 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R LA E+GL +A K +S D+C V+  G   + +          G+IV  +G+ILG H+G 
Sbjct: 176 RTLAAELGLSVAHKPESMDLCLVEAAGSMRNFLNAHID--TRRGEIVDTSGKILGEHDGA 233

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQRRGLGVA   PL+VV +D  ++RV+VG RE        + ++NW+     E  
Sbjct: 234 HHYTVGQRRGLGVAAPYPLYVVAVDAANNRVVVGAREEATACECTVGQVNWVSMAEPEAP 293

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEK-SEVGVASGQACVFYTSDSNEARV 377
           +    +  V++R    PV   +      G  + F+   +  ++ GQA V+Y  +    RV
Sbjct: 294 I----QAEVQVRYRSQPVQATIIPLPARGARIAFDDAPQFAISPGQAAVWYAGE----RV 345

Query: 378 LGGGIISGSKRS 389
           LGGGII  S RS
Sbjct: 346 LGGGIILASGRS 357


>gi|269102223|ref|ZP_06154920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162121|gb|EEZ40617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 333

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           ++ +      +    C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG
Sbjct: 1   MKNWEEDDNEE---YCSAAADLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAG 57

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
            TP P + CN+ +KF   L    + L AD +A GHY R              M R +D  
Sbjct: 58  RTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGHYTRRTF---PQAGEEPQMLRGLDNN 114

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
           +DQSYFL+  + +Q+    FP+G+++K  VR +A E GL  A K DS  ICF+ + K+ +
Sbjct: 115 KDQSYFLYTLSHEQIARSLFPVGELEKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTE 174

Query: 231 VVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQRRGL-------GVAMGEPLFVVY 282
            + +     A  G+IV  + G ++G H G++ +T+GQR+GL       G    +P +VV 
Sbjct: 175 FLGKYLP--AQPGNIVTADEGTVIGEHQGLMYHTLGQRKGLHIGGQKGGNGHEDPWYVVD 232

Query: 283 LDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            D   + ++V        L+ + +   +++W+      + +     C VK R  Q  +P 
Sbjct: 233 KDVKRNELVVAQGHDHPRLKSNGLIASQLHWVD----REPIRQPVTCTVKTRYRQQDIPC 288

Query: 340 FVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +   DD  + V F++ ++ V  GQ+ VFY  +      +GGGII 
Sbjct: 289 TIIPIDDENIKVIFDEPQIAVTPGQSAVFYNGEV----CMGGGIIE 330


>gi|254303789|ref|ZP_04971147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323981|gb|EDK89231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 362

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 198/376 (52%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L+ D N  ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  LEFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F   Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVDEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA+ +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGANFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250
           +GD++K  +R+ A++MG+ +  K DSQ+ICFV  GK    +     G A   G+IV  NG
Sbjct: 172 VGDLEKPKLREFAQQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILG+H G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  + L    +    +N 
Sbjct: 232 NILGKHRGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGENKDLFKDELTATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 +   +D  +CF K RS        ++++ D   V F +     V  GQ  VFY 
Sbjct: 292 FSVSSLDS--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAVTPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
            + N   V+ GG I  
Sbjct: 350 IEGN---VIAGGFIEK 362


>gi|308189959|ref|YP_003922890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma fermentans JER]
 gi|319777241|ref|YP_004136892.1| tRNA-specific 2-thiouridylase mnma [Mycoplasma fermentans M64]
 gi|307624701|gb|ADN69006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma fermentans JER]
 gi|318038316|gb|ADV34515.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma fermentans M64]
          Length = 372

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 177/380 (46%), Gaps = 35/380 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQ 71
              +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S   +   G+       C   Q
Sbjct: 2   HKKKVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQEQ 61

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D  DA  V + + +  +  D+ + + + V   F   Y  G TP P + CN+ +KF   L 
Sbjct: 62  DYQDALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAFLK 121

Query: 132 VT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +L AD +A GHY + +     +GK    + R  D  +DQ+YFL   T QQL  +  
Sbjct: 122 YAFEKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKVLM 172

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           PL D  KE +R +A+++ L  A K DS  ICF+ +  +   ++      A +G I+ +  
Sbjct: 173 PLADYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQNYIP--AQKGKILDIKT 230

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES---LEVHRIYL 305
            ++LG H+G   YTIGQR+GL +    E  +V   D  ++ +   P      LE + +  
Sbjct: 231 KEVLGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPSYLESNMLIA 290

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364
             +             +  K   K R  Q  + V V+   ++ + V +      V  GQ 
Sbjct: 291 SNL------CLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPGQQ 344

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y  D    + LGG II 
Sbjct: 345 VVLYDQD----KCLGGAIIE 360


>gi|256027773|ref|ZP_05441607.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
 gi|289765727|ref|ZP_06525105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289717282|gb|EFD81294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 362

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 201/376 (53%), Gaps = 30/376 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ D + ++++V VAMSGGVDSS VA LLK+ GYD+ GVT++ +    +           
Sbjct: 15  IEFDSSKRNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              DA++VCD + + HYV D  + F+  V+  F S Y  G TP PC+ CNR +KF  +L 
Sbjct: 64  ---DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLD 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  +ATGHY + +  +         +    D  +DQ YFL    + +L  + FP
Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLNKIIFP 171

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250
           +GD++K  +R+LA ++G+ +  K DSQ+ICFV  GK  + +     G A + G+IV  +G
Sbjct: 172 VGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKTGNIVDKDG 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            ILGRH G   YTIGQR+GLG++  EPL+V+  D+ ++ +IVG  E L    +    +N 
Sbjct: 232 NILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDELIATRLNL 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369
                 E   +D  +CF K RS        ++++ D   V F +     +  GQ  VFY 
Sbjct: 292 FLVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349

Query: 370 SDSNEARVLGGGIISG 385
            + N   V+ GG I  
Sbjct: 350 DEGN---VIAGGFIER 362


>gi|42521055|ref|NP_966970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81652123|sp|Q73FR5|MNMA_WOLPM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42410796|gb|AAS14904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 370

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 179/386 (46%), Positives = 243/386 (62%), Gaps = 19/386 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61
           + +   +  L  DK P   + VVAMSGGVDSSV AALL   GY V+GVTLQLY     A+
Sbjct: 1   MLKEFEIEPLLKDKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGVTLQLYGTDGNAN 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAGQD+YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN
Sbjct: 61  ARKGACCAGQDIYDAKRVAESVGFPHYLLNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +TVKF DLL VT+ LGADVL TGHY+R     G+       +CR +D  +DQSYFLFATT
Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG   K  +R LA+   L I++K DSQDICFV +  Y   + ++      
Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQ 234

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           +G IV +NG++LG H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   
Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359
           +I ++E+NWL      +   +G +  VK+RSS       +   D  +   V       G+
Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGI 348

Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385
           + GQACV Y  +    +V+GGG I  
Sbjct: 349 SPGQACVAYKDE----QVIGGGWICS 370


>gi|298245195|ref|ZP_06969001.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552676|gb|EFH86541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Ktedonobacter racemifer DSM 44963]
          Length = 391

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 201/397 (50%), Gaps = 42/397 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---------CCAGQD 72
           R+VVAMSGGVDSSV AALLK  G++VIG+ L+L++     + +           CC+ + 
Sbjct: 3   RIVVAMSGGVDSSVAAALLKEQGHEVIGMMLRLWSEPGVIEAEDDGVERVVQNKCCSLES 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V DARRV   +++  Y+ + E+ F+  ++  F   Y AG TP PC+ CNR ++F+ LL+ 
Sbjct: 63  VDDARRVARMLDIPFYLVNVEQEFKERIVDSFYEDYVAGRTPNPCLTCNRHIRFTVLLNK 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              L AD LATGHY+R   +     +R R     +D ++DQSY L    Q QL    FPL
Sbjct: 123 ALALEADYLATGHYVRVDDHPQTGRRRLRR---GLDPDKDQSYVLHVLNQHQLSHACFPL 179

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-------------- 238
           G   K  VR +A E G+++A K++SQ+ICFV Q  Y   + R  A               
Sbjct: 180 GGYTKPQVRAMAAERGMNVATKAESQEICFVAQNDYRGFIDRYAASKQEDDALVPAGVTA 239

Query: 239 ----------IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
                     I   G I    G +LGRH G+  YTIGQR+GLG+    PL V+ LD + +
Sbjct: 240 TATAAQPLITIPRPGPIYDQQGTLLGRHRGLAYYTIGQRKGLGLTSPAPLHVLKLDADQN 299

Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-G 347
            +IVGP  +L+     + ++++       D     F+  V++R      P  V   +   
Sbjct: 300 ALIVGPATALDQQEFTIGKMHYTTG----DVPTAPFEALVRVRYKAPEQPALVTPLEGQR 355

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             V     +  +  GQA V Y  + +   VLGGGII 
Sbjct: 356 ARVQLVHPQRAITPGQAAVLYGGE-DGDEVLGGGIIE 391


>gi|317125511|ref|YP_004099623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Intrasporangium calvum DSM 43043]
 gi|315589599|gb|ADU48896.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Intrasporangium calvum DSM 43043]
          Length = 365

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 194/372 (52%), Gaps = 16/372 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRVV AMSGGVDS+V AA +   G+DV+GV L L  S    +     CC  +D  DARRV
Sbjct: 1   MRVVAAMSGGVDSAVAAARMLDAGHDVVGVHLALSQSAATLRESARGCCTIEDAGDARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  ERFR  V+  F + YA G TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADVLGIPFYVWDMAERFRRDVVEDFTAEYARGRTPNPCLRCNEKIKFAALLDKAIALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +     G  G  RR + R +D  +DQSY L     +QL    FPLGD  K  
Sbjct: 121 AVATGHYAQVVEVPGVGGGVRRELHRAVDSAKDQSYVLGVLDAEQLARAFFPLGDTTKPQ 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A E G  +A K DS DICF+  G     + R        GDIV  +G +LGRH G 
Sbjct: 181 IREEAAERGFFVARKPDSHDICFIPDGDTRAWLGRALGEA--PGDIVDTDGAVLGRHAGA 238

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             YT+GQR+GLG+      G+P +VV +  ++++V+VG  + L V  I      W G   
Sbjct: 239 FGYTVGQRKGLGLSRPAPDGQPRYVVEVRTDTNQVVVGTADLLGVDAITGDHARWCG--- 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              A     +   ++R+    VP     + D V V  ++   GVA GQ+ V Y       
Sbjct: 296 --PAPAGVVRVGAQVRAHGAEVPATAWADGDRVEVRLDERIRGVAPGQSVVLYEG----T 349

Query: 376 RVLGGGIISGSK 387
           RV+G   I+ ++
Sbjct: 350 RVVGSATIASAR 361


>gi|291320347|ref|YP_003515609.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma agalactiae]
 gi|290752680|emb|CBH40653.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma agalactiae]
          Length = 374

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 172/381 (45%), Gaps = 36/381 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V++ MSGGVDSSV A LL + G++V G+ ++ ++S   +   G+       C   QD
Sbjct: 4   KKKVILGMSGGVDSSVCAYLLLKQGFEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQD 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA +V + + +  +  D+   + N V   F S Y  G TP P + CN+ +KF      
Sbjct: 64  YQDALKVANKLGIKLHRVDFVNEYWNDVFKTFISEYEHGRTPNPDILCNKYIKFKAFSDY 123

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +A GHY R       DG+    + R  DL +DQ+YFL   + +QL  +  P
Sbjct: 124 AFNNLGADYIAMGHYARV-----TDGR----LYRAKDLNKDQTYFLAQLSHEQLEKVLMP 174

Query: 192 LGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           L D   KE VR +A E  L  A K DS  ICF+ + K+   ++         GDIV +  
Sbjct: 175 LADFTSKEEVRKIAEEQDLITASKKDSTGICFIGERKFTKFLQNYIP--MQPGDIVDIKT 232

Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYL 305
            + +G+H G   YTIGQR+GL      EP +V   +   + + V P   L       +  
Sbjct: 233 NKKIGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHNVKENILYVSPSSDLSYLTSDALLA 292

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
             +    D        D      K R  Q  +PV ++   +  + V +      V  GQ 
Sbjct: 293 TGLTLNHDDF------DLNNLSAKFRYRQKDIPVTIELLPNNAIKVYYPSEAQAVTPGQQ 346

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            V Y  +    + LGG +I  
Sbjct: 347 VVLYDGE----KCLGGAVIEK 363


>gi|327405404|ref|YP_004346242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fluviicola taffensis DSM 16823]
 gi|327320912|gb|AEA45404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fluviicola taffensis DSM 16823]
          Length = 392

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/402 (31%), Positives = 194/402 (48%), Gaps = 50/402 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LL+++GY+VIG+ ++ ++    +     C    D  DA  + 
Sbjct: 2   KRVVVGLSGGVDSSVTAHLLQQEGYEVIGLFMRNWHDETVT-LSNDCPWIDDSNDALLIA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D  + ++  ++    + Y AG TP P V CNR +KF   L    +LGAD 
Sbjct: 61  EQLGIPFQVLDLSKEYKERIVDYMFAEYEAGRTPNPDVLCNREIKFDVFLKAAMELGADF 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      +DG     +   +D  +DQSYFL   +Q QL    FP+G+++K  V
Sbjct: 121 VATGHYCRK--ITTEDG--IHHLLTGLDPNKDQSYFLCQLSQDQLSKALFPIGNLQKSEV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249
           R +A+E+GL  ADK DSQ +CFV +    + +++        G I+ +N           
Sbjct: 177 RAIAKEIGLVTADKKDSQGLCFVGKISLPEFLQQKLE--VKYGKIIEINELDNQFLNYST 234

Query: 250 ---------------------GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNS 287
                                G  + +H G   YTIGQR+GL +     P FV+ +D  +
Sbjct: 235 IPVNLNNVIELSKEFIYSPDMGIEVEKHIGAHYYTIGQRKGLNIGGRPNPSFVIGIDTTT 294

Query: 288 SRVIVGPRESL-----EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
           + V  G ++          +I   E++W+    FE  + D  +  ++IR  Q      + 
Sbjct: 295 NTVYSGQKDEHPGLNKWALKIETSEMHWINPT-FEMNIGDSKEFDIRIRYRQSFQKGTLT 353

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           R  DG Y+ F + + G+  GQ   FY  D     ++G GIIS
Sbjct: 354 RLQDGFYILFNQKQRGITPGQFAAFYNED----ELIGSGIIS 391


>gi|24214187|ref|NP_711668.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|59799068|sp|Q8F625|MNMA_LEPIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24195088|gb|AAN48686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 375

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 138/384 (35%), Positives = 213/384 (55%), Gaps = 13/384 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
              +++VAMSGGVDS+V A LL  DGY+VIGV L+ +          K SCC+ +D+ DA
Sbjct: 2   SKGKIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V  ++ +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + L
Sbjct: 62  RDVGISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKAL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R           R  +   +D+ ++Q+Y+L+  +Q+ L ++ FPLG+M 
Sbjct: 122 GIDKIATGHYARIARN-----GERYAIANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMT 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +AR MGL +ADKS+SQ+ICF+ +  Y   +++ N      G     +G+I+G+H
Sbjct: 177 KPEVRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKN-VEFTPGFFKLKDGRIVGKH 235

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G  N+TIGQR+GLG+A   PL+V+ ++ +   VI+G           + ++N+ G    
Sbjct: 236 KGRENFTIGQRKGLGIAWKNPLYVISIE-DDGSVILGEENETYNESFSVIDLNFQGLAPL 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +   +  +C V++R    P+   + +  +G+ V   +   GV  GQ+ VFY  DS+   
Sbjct: 295 NEG--ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--Y 350

Query: 377 VLGGGIISGSKRSDAVEESLLSVI 400
           +L GGIIS       + E  +SV+
Sbjct: 351 LLLGGIISKGSIQMRIVEPAISVL 374


>gi|297565299|ref|YP_003684271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Meiothermus silvanus DSM 9946]
 gi|296849748|gb|ADH62763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Meiothermus silvanus DSM 9946]
          Length = 371

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 205/370 (55%), Gaps = 25/370 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV+VAMSGGVDSSV AALLK  GY+VIG  ++ +   K      +CC+    Y+ARR
Sbjct: 4   SKGRVLVAMSGGVDSSVSAALLKAQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARR 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + V  Y+ DY E F+  +I PF + YAAGETP PCV+CN  VKF  LL   R LG 
Sbjct: 64  VADIVGVPFYLLDYREEFQEKIIDPFIAGYAAGETPNPCVNCNTRVKFDSLLKKARMLGC 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+               + R  D ++DQ+YFL+ T ++ +  + FP+G ++K 
Sbjct: 124 DFVATGHYVIREGNA---------LFRG-DPKKDQTYFLWGTPKEAIPHMMFPVGHLEKP 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A + GL  A K +SQ+ICFV QG   + +   N   A  G +V L  G+++G H 
Sbjct: 174 QVRAIAEQYGLPTAKKPESQNICFV-QGDLKEFLS--NHLTARPGPLVDLETGEVIGEHA 230

Query: 258 GIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQ++GLG+       +VV ++  ++ VIVGPRE+     +  RE+N L +   
Sbjct: 231 GAQFYTVGQKKGLGLFKTHLERYVVRVNPATNEVIVGPREACLWSGLEAREVNLLVEPEE 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               ++     V++R    PV   V+R  D G+ V   + +  V  GQ+ V Y  D    
Sbjct: 291 LPETLE-----VQVRYRTKPVLGKVERLGDGGMTVRLAEPQFAVTPGQSMVLYQGD---- 341

Query: 376 RVLGGGIISG 385
           R+LGGG I  
Sbjct: 342 RLLGGGFIQR 351


>gi|145628472|ref|ZP_01784272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.1-21]
 gi|144978942|gb|EDJ88628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.1-21]
          Length = 328

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/343 (30%), Positives = 181/343 (52%), Gaps = 28/343 (8%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           ++ +     +     C A  D+ DA+ VCD + +  +  ++   + + V   F + Y AG
Sbjct: 1   MKNWEEDDDTD---YCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAG 57

Query: 112 ETPLPCVDCNRTVKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
            TP P + CN+ +KF   L      LGAD +ATGHY+R     GD+   +  + R +D  
Sbjct: 58  RTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPN 112

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
           +DQSYFL+  + +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D
Sbjct: 113 KDQSYFLYTLSHKQVGQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKD 172

Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDK 285
            + R     A  G+I  ++ +I+GRH+G++ +T+GQR+GLG+        E  +VV  D 
Sbjct: 173 FLARYLP--AQPGNIRTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDV 230

Query: 286 NSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
            ++ +IV        L    +   +++W+      + + +  +C VK R  Q  +P  ++
Sbjct: 231 ENNELIVAQGHDHPRLFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIE 286

Query: 343 RNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             DD  + V F++ +  V  GQ+ VFY  ++     LGGGII+
Sbjct: 287 PIDDETIRVIFDEPQSAVTPGQSAVFYLGEA----CLGGGIIA 325


>gi|298373676|ref|ZP_06983665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274728|gb|EFI16280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 361

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 205/371 (55%), Gaps = 19/371 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77
             +V+++MSGG+DS+V A LL R GYD++GVT + ++S      +R+  CC    + +AR
Sbjct: 4   KKKVLLSMSGGIDSTVAAILLMRQGYDLVGVTYRTWDSVSQGCFEREKGCCTINAIMEAR 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   +   H+  D  ++FR++VI  F   Y AG TP PCV CN  +K+ +++ +   + 
Sbjct: 64  RMAAEMGFPHHFLDIRQKFRDSVIKNFIDEYLAGRTPNPCVVCNAEIKWGEVVKLADSMD 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY R     G     +  + + +D  +DQ+YFL+   Q  L    FPLG++ K
Sbjct: 124 CDYIATGHYARIESLNG-----KYYLKKGVDTNKDQTYFLWRLPQSVLRRTIFPLGELTK 178

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQIL 253
             VR +A + G + ++ K++SQ+ICFV    Y + ++  ++    I  +G+ V + G IL
Sbjct: 179 PEVRQIAFDAGYEKLSKKAESQEICFVPDNDYREFLRAESSAYNEIGTDGNFVDVAGNIL 238

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           GRH G  NYT+GQR+GLG+A+G P+FV  +    + V++  R+ L    +   + N++  
Sbjct: 239 GRHKGYPNYTVGQRKGLGIALGRPMFVSQIRPERNEVVLADRDDLYTKTLTATDCNFVD- 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
               D + DG +   +IR         +    + V V F+K    VA+GQ+ VFY  +  
Sbjct: 298 ---RDTIHDGLEVDARIRYKSPATSAKIVLEGNKVRVSFDKEVWAVAAGQSVVFYKDN-- 352

Query: 374 EARVLGGGIIS 384
              ++GGG+I 
Sbjct: 353 --LIIGGGVIE 361


>gi|86608667|ref|YP_477429.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502696|sp|Q2JM78|MNMA_SYNJB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86557209|gb|ABD02166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 368

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/350 (38%), Positives = 193/350 (55%), Gaps = 19/350 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+V A+SGGVDSS VAALL+  GY V GVTL L       + KG CC  + + DA  VC+
Sbjct: 19  RIVAALSGGVDSSTVAALLQEQGYAVEGVTLWLM------RGKGQCCT-EGLVDAAAVCE 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + + H+V D  E F+  ++    + YA G TPLPC  CN+ VKF  LL+  R+ LG   
Sbjct: 72  QLGIPHHVVDSRELFQANIVDYLVAGYAEGITPLPCSQCNKLVKFGPLLAYAREKLGISQ 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R         R  + R +D ++DQSYFL+  +Q+ L    FPLG+  K   
Sbjct: 132 MATGHYARVRFNA---ELGRYQLLRAVDRQKDQSYFLYDLSQEHLAHSLFPLGEYTKAQT 188

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R LA   GL  ADK +SQD+C ++  G     + +        G+IV   G++LG H GI
Sbjct: 189 RQLAARYGLVTADKPESQDLCLIETYGSMRSFLDQYLGQ--RPGEIVDTQGRVLGSHEGI 246

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+A   PL+VV +D   +RV+VG RE       ++ ++NW+       A
Sbjct: 247 HHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEATQAEAWVSQVNWVSI----PA 302

Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFY 368
                   V++R    PVP   +  + + V + F + + GV  GQA V+Y
Sbjct: 303 PTGSLAVEVQVRYRTPPVPAMVIPESPERVKLQFAEPQFGVTPGQAAVWY 352


>gi|99035878|ref|ZP_01314930.1| hypothetical protein Wendoof_01000225 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 370

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/386 (46%), Positives = 243/386 (62%), Gaps = 19/386 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61
           + +   +  L  DK P   + VVAMSGGVDSSV AALL   GY V+G+TLQLY     A+
Sbjct: 1   MLKEFEIEPLLKDKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGMTLQLYGTDGNAN 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG+CCAGQD+YDA+RV +++   HY+ +YEE F+  VI  FAS+Y  GETP+PCV CN
Sbjct: 61  ARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +TVKF DLL VT+ LGADVL TGHY+R     G+       +CR +D  +DQSYFLFATT
Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  LRFPLG   K  +R LA+   L I++K DSQDICFV +  Y   + ++      
Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQ 234

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           +G IV +NG++LG H+GI+N+T+GQR+GLG+A  EPL+V+ ++  ++ VIVGP   L   
Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359
           +I ++E+NWL      +   +G +  VK+RSS       +   D  +   V       G+
Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGI 348

Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385
           + GQACV Y  +    +V+GGG I  
Sbjct: 349 SPGQACVAYKDE----QVIGGGWICS 370


>gi|295698406|ref|YP_003603061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Riesia pediculicola USDA]
 gi|291157242|gb|ADD79687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Riesia pediculicola USDA]
          Length = 363

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 195/382 (51%), Gaps = 36/382 (9%)

Query: 16  KNPKD--MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           KN K+   RVVV MSGGVDSSV A LLK+  Y+V+G+ ++ +          SC   +D+
Sbjct: 2   KNKKNYVARVVVGMSGGVDSSVAALLLKKRNYEVLGLFMKNWEEDDGH----SCSYIEDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D + VC+ + +  Y  ++   + N V   F   Y  G+TP P V CN+ +KF + L  +
Sbjct: 58  KDVKSVCEKLKIQLYQVNFSIEYWNKVFKVFLKKYKTGKTPNPDVLCNKEIKFKEFLDFS 117

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L AD +ATGHY+R +         + I+ +  D  +DQSYFL    Q QL  + FP+
Sbjct: 118 LENLNADYIATGHYVRKKKR-----NEKYILLKAKDERKDQSYFLHLLDQSQLEKVIFPI 172

Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G+ KK  +R +A + G L ++ K DS  ICF+ + ++ + +++        GDI+ ++ +
Sbjct: 173 GEFKKSEIRKIAEKNGLLSVSKKKDSTGICFIGKKRFENFLQKYI--SCKNGDILSVHKE 230

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           I+G+H G I YT+GQR+G+ +         P +V+  +   + +++       SL    I
Sbjct: 231 IIGQHPGSILYTLGQRKGIRIGGIKNEKHGPWYVIDKNVKQNTIMISQNKFHPSLVSKGI 290

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASG 362
            +  ++W+ +          ++C V+ R  Q      +++   + + V F+   + V  G
Sbjct: 291 IINNVHWISEP--------KYRCSVQTRYHQKETYCSIRKICLNRISVRFDHPILSVTPG 342

Query: 363 QACVFYTSDSNEARVLGGGIIS 384
           Q  VFY  +      LGGG I 
Sbjct: 343 QYGVFYDREV----CLGGGEID 360


>gi|313837818|gb|EFS75532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL037PA2]
 gi|314927301|gb|EFS91132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL044PA1]
          Length = 360

 Score =  414 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/375 (37%), Positives = 197/375 (52%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGG+DS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y ++++  G        + R +D  +DQSY L    Q QL    FPLG+  K  VR  A 
Sbjct: 121 YAQAKVIDG-----VTKLYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +       + +G+I   +G ++GRHNG   +TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGRHNGYHRFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L V+ I      W           
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWCSGE-----PA 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           D +   V++R+  DPVP  +     GV V+ E    GVA GQA VFY  D     V+G  
Sbjct: 289 DTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGTTAEQA 359


>gi|255036423|ref|YP_003087044.1| tRNA-specific 2-thiouridylase MnmA [Dyadobacter fermentans DSM
           18053]
 gi|254949179|gb|ACT93879.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dyadobacter fermentans DSM 18053]
          Length = 368

 Score =  414 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 205/379 (54%), Gaps = 20/379 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGG+DSS+ A LL   GY+VIG+T++ ++  S   +K++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +   +   HY+ D    F + VI  F   Y  G TP PCV CN  +K+  LL    +L
Sbjct: 63  RNIAVELGFPHYILDIRAEFGDYVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADRL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   +   G     R  + + +D  +DQSY L+  +Q+ L   + PLG + 
Sbjct: 123 DCEFIATGHYANMQFNNG-----RHYVSKGIDAWKDQSYVLWGVSQESLARTKLPLGYLH 177

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R++ARE G  D+ +KS+S +ICFV    Y   +KR   G+  E   G+ V+ +G I
Sbjct: 178 KAEIREMARERGFIDLVNKSESYEICFVPDNDYRGFLKRRIPGLEAEVAGGNFVYADGTI 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YT+GQR+GLG+A+G P+FV  + K+++ V++G    L    + + ++N   
Sbjct: 238 VGKHEGYPFYTVGQRKGLGIALGRPVFVTEIRKDTNEVVLGDMPDLFRDGMNVSKLNL-- 295

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371
                 ++    +   K+R   D  P  +++   D +   F     G+A GQA VFY  D
Sbjct: 296 --QKYASIEKPLETITKVRYKHDGTPALIEQTGPDQIVARFHDGVNGIAPGQAAVFYEGD 353

Query: 372 SNEARVLGGGIISGSKRSD 390
                V+GGG I  S R +
Sbjct: 354 D----VVGGGWIMKSFRQE 368


>gi|227832922|ref|YP_002834629.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262182589|ref|ZP_06042010.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254811450|sp|C3PFT7|MNMA_CORA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|227453938|gb|ACP32691.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 361

 Score =  414 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 150/376 (39%), Positives = 199/376 (52%), Gaps = 24/376 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G+DVIGV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 1   MRVLVAMSGGVDSSVAAARAVEAGHDVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+ AVI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSEEFKEAVIGDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      +  DG     M R +D  +DQSY L   T+++L    FP+GD  K  
Sbjct: 121 AVATGHYAT----IDSDG----YMRRSLDENKDQSYVLGVITKEELDHCFFPIGDTPKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A+  G   A K DS DICF+  G     + R        G IV   G  L  H+G 
Sbjct: 173 IREEAKRHGFSTAAKPDSYDICFIPDGNTQAFLGRSIGL--RPGMIVDTEGNELKEHDGA 230

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            NYTIGQR+GL +    A G P +V  +D  +  V VG R  L V  I    + +L    
Sbjct: 231 WNYTIGQRKGLDIKTPTADGSPRYVTDIDAATGTVTVGSRADLAVTHIEADRLKYLH--- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371
              A+   F C V++R+    VP    V R  D + ++  +   GVA GQA V Y  + D
Sbjct: 288 --PAMEGDFDCEVQVRAHGSVVPCHAHVDREADRMTLELNEPLSGVARGQAAVLYLPSPD 345

Query: 372 SNEARVLGGGIISGSK 387
                VLG G I G++
Sbjct: 346 ELGDIVLGSGTICGTE 361


>gi|254796826|ref|YP_003081663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia risticii str. Illinois]
 gi|254590056|gb|ACT69418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia risticii str. Illinois]
          Length = 368

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/370 (45%), Positives = 236/370 (63%), Gaps = 15/370 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVY 74
           K  +D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+++  +++  + +CCAG D++
Sbjct: 11  KASRDIKVMVAMSGGVDSSTVAAYLHRAGYKVIGVTLQLHSNSTSTQTNRKTCCAGSDIF 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+RV       HYV + EE FR  VI  FA SY  GETP+PCV CN+TVKF DL+ + +
Sbjct: 71  DAKRVAAQFGFLHYVVNMEETFRKEVIEDFAKSYLRGETPIPCVKCNQTVKFRDLMKIAK 130

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            L  D L TGHY+R              + + +D  +DQSYFLF TT++QL  LRFPLG+
Sbjct: 131 NLSVDALVTGHYVRRLT-----TTNGVELHKGIDPSKDQSYFLFNTTREQLEFLRFPLGN 185

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           +KK   RDLAR++ +DI++K +SQDICFV    Y DV+K+        G I+  NG++LG
Sbjct: 186 LKKSETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQKPGKILSTNGEVLG 245

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            HNG I+YTIGQR GL ++   PL+VV +D  ++ +IVG R+ L+   +Y++E+NWL   
Sbjct: 246 THNGTIHYTIGQRHGLQLSSPTPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWLDG- 304

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSN 373
                +  G +C VK+RS  D V  ++  + D + V   E+ +  +A GQACV Y     
Sbjct: 305 ---KELTAGLECEVKLRSGADTVKGYLYPSSDLLKVSLAEEPKCAIAPGQACVMYHG--- 358

Query: 374 EARVLGGGII 383
            ++VLGGG I
Sbjct: 359 -SKVLGGGWI 367


>gi|114776442|ref|ZP_01451487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
 gi|114553272|gb|EAU55670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
          Length = 374

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/371 (41%), Positives = 200/371 (53%), Gaps = 18/371 (4%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYD 75
             K +RV+ AMSGGVDSSV+A LLK  G DVIGV L +++ SR    R GSCC+ +D YD
Sbjct: 18  PLKGVRVIAAMSGGVDSSVMAVLLKEAGVDVIGVFLNVWDYSRDEVNRHGSCCSLEDSYD 77

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV D I +  Y  D  + FR  VI PF   Y  G TP PC  CNR VKF  LL    +
Sbjct: 78  ARRVADHIGIPFYAMDMRDEFRRDVIDPFIQDYETGRTPNPCERCNRFVKFGALLEAADK 137

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L A  +ATGHY+R R     D      + +  D  +DQSYFL  T + Q   + FP+G +
Sbjct: 138 LEAAYVATGHYVRRR-----DDNDGIHLFKGNDARKDQSYFLATTNRAQAERILFPVGGL 192

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILG 254
           +K+  R LA    L  ADK +SQDICF+  G     +KR  A     EGDIV   G+ILG
Sbjct: 193 EKDDTRRLAHFYKLPTADKHESQDICFIPAGDRIAFLKREGAEAGFREGDIVDTTGRILG 252

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH GI +YT+GQR+GLG+  G P  VV LD  ++RV V   E   +  + + E  W+ + 
Sbjct: 253 RHQGIAHYTLGQRKGLGLPDG-PWHVVALDGATARVTVAHPEDAMIGGVDVSEAVWIRE- 310

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                   G     K+R    P    ++  D+ + V F + +   A GQ   FY  D   
Sbjct: 311 -----PKSGEAVTAKVRYQMQPAACVLEHFDESLRVTFAQPQKPSAPGQVAAFYAGD--- 362

Query: 375 ARVLGGGIISG 385
             +LGGGI+S 
Sbjct: 363 -ELLGGGIVSR 372


>gi|256820771|ref|YP_003142050.1| tRNA-specific 2-thiouridylase MnmA [Capnocytophaga ochracea DSM
           7271]
 gi|256582354|gb|ACU93489.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Capnocytophaga ochracea DSM 7271]
          Length = 397

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 191/405 (47%), Gaps = 50/405 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LLK  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  E ++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +   G +   +    D  +DQSYFL   +Q QL    FP+G+++K  V
Sbjct: 121 VATGHYCR-KEEIEIKGGKIYRLLSGKDENKDQSYFLCQLSQDQLSKALFPVGELQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248
           R +A+   L  ADK DSQ +CFV + +  + +++       +GDI+ +            
Sbjct: 180 RAIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQ--PKQGDIIEIPNDWKGYTDFDM 237

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284
                                  NG+ +G H G   +T GQR+GL      EPLF++  D
Sbjct: 238 PRTFETYEDELEYLSQRFVYQPENGKKVGIHQGAHYFTKGQRKGLNVGGTKEPLFIIETD 297

Query: 285 KNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + +  G       L    +++   + +W+ + L    + +  +  V+IR  Q     
Sbjct: 298 IEKNIIYTGQGHTHRGLFRSALFIATPDEHWIREDLAL-KIYESKEFMVRIRYRQPLQKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + + ++G+Y+ F + +  +  GQ   +Y+ D     ++G G+IS
Sbjct: 357 VLYKVENGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397


>gi|296124260|ref|YP_003632038.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Planctomyces limnophilus DSM 3776]
 gi|296016600|gb|ADG69839.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Planctomyces limnophilus DSM 3776]
          Length = 392

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/390 (35%), Positives = 202/390 (51%), Gaps = 31/390 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---------------LYNSRKASKRKGS 66
           RVV+AMSGGVDSSV A LL++ GY+VIG+ ++               L    +    K  
Sbjct: 9   RVVLAMSGGVDSSVAAVLLQQQGYEVIGLFMRSGEASASACSLPPSGLLPVIERKSHKQG 68

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+  D  DA+RV D +++  +  ++ + F + +   FA  Y  G TP PCV CN  +KF
Sbjct: 69  CCSAADAADAQRVADLLDIPFHALNFRDSF-DQIKSYFADEYLKGRTPNPCVMCNVWLKF 127

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    +Q+GA  +ATGHY R       D   +  + R  DL +DQSY LF      L 
Sbjct: 128 GRLWEFAQQVGATRIATGHYARIIQ----DEFGQTRLMRGADLSKDQSYVLFGIRPDILS 183

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            + FP+G   K  +R++A +  L +A K DSQ+ICF+    Y   ++R        G+ V
Sbjct: 184 KILFPVGHQPKAEIREIAAQANLRVAGKPDSQEICFIPDNDYRGFLRRYRDVSDTSGNFV 243

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
              G+ILG+H+G   +TIGQRRGLG+A+GEP FV+ +D  S  V +G  E L    +   
Sbjct: 244 DPQGKILGQHSGFEQFTIGQRRGLGIALGEPRFVIKIDAESRNVTLGTAEELGSSSLVAA 303

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
             NWL          + F C  +IRS       + Q + DG +++ F + + GVA GQA 
Sbjct: 304 RTNWLS-----APTSEVFSCTAQIRSMHRAAAAWAQVDADGTLHLRFCEPQSGVAPGQAV 358

Query: 366 VFYTSDSNEARVLGGGIISGSK--RSDAVE 393
           V Y    +  RV+ G  I  S+  R+DA+ 
Sbjct: 359 VLYD---SLERVICGAWIEDSQPPRADALA 385


>gi|314923325|gb|EFS87156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL001PA1]
          Length = 396

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 203/380 (53%), Gaps = 21/380 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ AMSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  
Sbjct: 32  KVLAAMSGGVDSAVAAARLVETGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAA 91

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D 
Sbjct: 92  DRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDA 151

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +V
Sbjct: 152 VATGHYARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNV 206

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A  +GL +ADK DS DICF+  G     +         +G+I   +G ++G HNG  
Sbjct: 207 RQEAAALGLSVADKPDSNDICFIPDGDTPGWLSDKIGLA--DGEIRDESGALVGHHNGYH 264

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           ++TIGQRRGL +      G+P +V+ ++  ++ V+VG  E L VH I +    W      
Sbjct: 265 HFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEVIRPVWCSGE-- 322

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               V+ +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     
Sbjct: 323 ---PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----L 375

Query: 377 VLGGGIISGSKRSDAVEESL 396
           V+G   I G+ R+    E  
Sbjct: 376 VVGSATICGTDRAGVKAEQA 395


>gi|162455579|ref|YP_001617946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sorangium cellulosum 'So ce 56']
 gi|205828973|sp|A9EXM5|MNMA_SORC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161166161|emb|CAN97466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sorangium cellulosum 'So ce 56']
          Length = 385

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/385 (38%), Positives = 201/385 (52%), Gaps = 21/385 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++     RV +AMSGGVDSSV AA L   GY+V+GVTL L++       K  CCA +D +
Sbjct: 16  ERPSSGARVFIAMSGGVDSSVAAARLCDAGYEVVGVTLHLWDYPDDGSVKSRCCAPEDQH 75

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DARRV D + + HY FD    FR  V+ PF  +Y AGETP PCV CNR+VK  +L  +  
Sbjct: 76  DARRVADHLGIPHYTFDRRALFREHVVDPFVEAYLAGETPSPCVACNRSVKLRELFPLAE 135

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LG   +ATGHY R  L  G        + R  D  +DQSYFL      +L  L FPLGD
Sbjct: 136 RLGVSWVATGHYARVVLEEG-----GARLYRGRDRHKDQSYFLHMLRSDELSRLLFPLGD 190

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ VR  A   GL  A+K +SQ++CF+  G+Y   V    A     G IV  +G+++G
Sbjct: 191 STKDEVRAEAIARGLPGAEKGESQELCFIPSGRYAPFVADRAADRLRPGPIVDRDGRVVG 250

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G+  +T+GQR+G+GV++G P FVV LD  S  V +G    L      + +  W  D 
Sbjct: 251 SHGGVHGFTVGQRKGIGVSLGRPAFVVGLDAASGAVHLGDEGDLYAAGAEIADAVWCDDA 310

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVFY 368
           +F        +  V++R+  +  P  ++R  D           F      V+ GQ  V Y
Sbjct: 311 VF------PLEAEVRVRARHEAAPGIIERRRDPATGAESFVARFASPVRSVSPGQMAVVY 364

Query: 369 TSDSNEARVLGGGIISGSKRSDAVE 393
             D    RVLGGG I  + RS A  
Sbjct: 365 RGD----RVLGGGRIKAALRSQAAS 385


>gi|217967082|ref|YP_002352588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus turgidum DSM 6724]
 gi|217336181|gb|ACK41974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus turgidum DSM 6724]
          Length = 343

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 200/365 (54%), Gaps = 27/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V MSGGVDSS+ A LLK++GY+VIG+T+ +                  + DA++V +
Sbjct: 4   KVAVGMSGGVDSSITAYLLKKEGYEVIGLTMNI-------------AYSSSIKDAKKVAE 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+ H+  D +  F   +I  F  SY  G TP PCV CN+ +KF  LL   ++LGAD L
Sbjct: 51  YLNIPHFFVDLKNEFEEKIIKYFVESYKHGYTPNPCVFCNKLIKFGLLLEKAKELGADFL 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TGHY+R    V D+ ++  ++ R  DL++DQSYFL   TQ+Q+    FPLG++ KE VR
Sbjct: 111 STGHYVRK---VWDEERKTYLLMRAKDLKKDQSYFLGMLTQEQIKKTLFPLGELTKEEVR 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A E+G+ +A+K +SQDICF+    Y   + +        G I+  +G+ +G H+G+ +
Sbjct: 168 KIADELGIFVANKKESQDICFLPDKDYKRFLSKYLED--KPGKIITEDGKEVGYHSGVFS 225

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +TIGQRRGL VA+G P++V  +D N+  V V  RE +    +Y   +N+           
Sbjct: 226 FTIGQRRGLRVALGVPVYVRDIDPNTGNVTVTDREKVFGKEVYAVNVNY----PSYFPEK 281

Query: 322 DGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              + +  IR +  P P  ++  ++  V   F+  +  +  GQ  V Y  +     VL  
Sbjct: 282 RELRAYAMIRYNMKPSPGVLKIVSEKEVLFIFDDPQWAITPGQILVCYLDN----HVLCA 337

Query: 381 GIISG 385
           GII  
Sbjct: 338 GIIER 342


>gi|224023564|ref|ZP_03641930.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM
           18228]
 gi|224016786|gb|EEF74798.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM
           18228]
          Length = 378

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 187/384 (48%), Gaps = 22/384 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RV+V MSGG+DSS V  +L+  GY+V+GVT++ ++        G      +V +A+ 
Sbjct: 5   KDKRVLVGMSGGIDSSAVCIMLQEQGYEVVGVTMRTWDVPSHFSTPGQ-EQPDEVLEAQA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H+V D  E FR  ++  F   Y  G TP PCV CN   K   L     +   
Sbjct: 64  LAARLGIEHHVADVREEFRQVIVKYFIDEYMRGRTPNPCVMCNPLFKERILCEWADRTDC 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY +      +D    R +    D  +DQSYFL+   Q+ L  + FPLG M K+
Sbjct: 124 AWIATGHYCQL-----EDRNGYRYILTGDDPTKDQSYFLWKLPQEILRRMIFPLGGMTKQ 178

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR    E G +  A   +S +ICF+    Y D ++     I      G  V   G  LG
Sbjct: 179 EVRAYLAEKGFEAKARGGESMEICFI-DKDYRDFLREHCPDIDERIGPGWFVDSKGLKLG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQRRGL +A+G+P +V+ ++   + V++G  E L    + + ++N     
Sbjct: 238 QHKGFAYYTIGQRRGLDIALGKPAYVLKINPAKNTVMLGDAEQLNAEYMLVEDVN----V 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              + ++      V+IR     +P  V   +D+ + V FE     +  GQ+ VFY  +  
Sbjct: 294 ANLEELLTCPSLSVRIRYRSRAIPCRVITLDDNRLLVKFEGPASAITPGQSAVFYDGN-- 351

Query: 374 EARVLGGGIIS--GSKRSDAVEES 395
             RVLGGG I+   + R  A E  
Sbjct: 352 --RVLGGGFIAFQQAIRKIAAENQ 373


>gi|91215966|ref|ZP_01252935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychroflexus torquis ATCC 700755]
 gi|91185943|gb|EAS72317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychroflexus torquis ATCC 700755]
          Length = 397

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 192/405 (47%), Gaps = 50/405 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A L K  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLCKEKGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  ++++  ++    + Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSKQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIATSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  + +    +    D  +DQSYFL   +Q+QL    FP+G+++K  V
Sbjct: 121 VATGHYCR-KDSIEKNSETIYRLLAGKDDNKDQSYFLCQVSQKQLAKTLFPVGELQKSEV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249
           R +A+   L  ADK DSQ +CF+ + K  D +++     + EG ++ ++           
Sbjct: 180 RQIAKSQNLITADKKDSQGLCFIGKVKLPDFLQQKLK--SKEGQVIEIDSSHDIFKAEKS 237

Query: 250 ------------------------GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLD 284
                                   G++LG H G   +T GQR+GL +    EPLFV+  D
Sbjct: 238 AKTDSELITQLKKDSKKLSLKPEFGKVLGTHVGAHFFTKGQRKGLAIGGTKEPLFVIDTD 297

Query: 285 KNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
             ++ +  G       L    +++   E++W+   L E    D  +   +IR  Q     
Sbjct: 298 VENNILYTGQGKTHPGLHKKGLWVTNDEVHWIRQDL-ELKEGDTMEVMARIRYRQPLEKA 356

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + +  D +YV FE  +  ++ GQ   +Y  D     +LG G+I+
Sbjct: 357 KLYKMKDELYVIFEDEQTAISEGQFVAWYHED----ELLGSGVIA 397


>gi|110638005|ref|YP_678212.1| tRNA-specific 2-thiouridylase MnmA [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280686|gb|ABG58872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 358

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 18/370 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGG+DSSV A +L   GY+VIG+T++ ++      SK++  CC+   + DAR +  ++ 
Sbjct: 1   MSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDARNIAVSLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
             HY+ D  E F + VI  F   Y  G TP PCV CN  +K+  LL    ++  D +ATG
Sbjct: 61  FPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKMDCDFIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY + R         R ++ + +D  +DQSY L+  +QQ L    FPLG + K  +R +A
Sbjct: 121 HYAQVRSE-----NNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLHKTDIRAMA 175

Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGII 260
            E G  D+ +KS+S +ICFV    Y   +KR N G+  E   G+ V  +G ++G+H G  
Sbjct: 176 AERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTVVGKHEGYP 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+ +G P+FV  + K ++RV++G  E L  + +++ ++  +         
Sbjct: 236 FYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQL--IMSKYENLKG 293

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           +       K+R + D     +++  D + V F +    +A GQA VFY  +     V+GG
Sbjct: 294 IQKQSIT-KVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND----VIGG 348

Query: 381 GIISGSKRSD 390
           G I  S + D
Sbjct: 349 GWIKSSFKQD 358


>gi|301774935|ref|XP_002922890.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/388 (31%), Positives = 183/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VVVA+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 64  HVVVALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCIADRDCEDAYRVCQ 120

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F S Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 121 ILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 180

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 181 VATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 240

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + K+ V+ +A E  L  +  K +S  ICF+ +  + + + +       
Sbjct: 241 DALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILQYLQ--PR 298

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +   + EP +VV  D     V V P     +
Sbjct: 299 PGKFISIEDSKVLGTHKGWFLYTLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTDHPA 357

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   K+
Sbjct: 358 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 417

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A GQ  VFY  D      LG G I
Sbjct: 418 VRALAPGQFAVFYKGD----ECLGSGKI 441


>gi|46200029|ref|YP_005696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB27]
 gi|55980227|ref|YP_143524.1| tRNA-specific 2-thiouridylase MnmA [Thermus thermophilus HB8]
 gi|81405338|sp|Q72GX1|MNMA_THET2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81600559|sp|Q5SLN5|MNMA_THET8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46197656|gb|AAS82069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB27]
 gi|55771640|dbj|BAD70081.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB8]
          Length = 367

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 188/372 (50%), Gaps = 34/372 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDV 73
            RV+VAMSGGVDSSV A LLK  GY+V+G  ++ +        +        SCC     
Sbjct: 2   KRVLVAMSGGVDSSVAALLLKEAGYEVVGAMMRFWPDLPPPSLEAGKPRAWESCCTPDAA 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           Y+ARRV D + +  Y+ DY E F   +I PF   YA G TP PC  CN  VKF  LL   
Sbjct: 62  YEARRVADRLGIPFYLLDYREVFEEEIISPFLQDYAQGRTPNPCARCNTFVKFGALLKQA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LG D +ATGHY+R         K    + R +D  +DQ+YFL+ T ++ L  L FP+G
Sbjct: 122 RRLGLDYVATGHYVR---------KEGLALLRGLDPHKDQTYFLWGTPKEALPHLLFPVG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
            + K  VR LA + GL  A + +SQ++CFV  G     +K         G +V  L G++
Sbjct: 173 GLTKPEVRALAEKAGLPTARRPESQNLCFVA-GDLKGFLKERLK--PRPGPLVDALTGEV 229

Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           +G H G   YT+GQR+GLG+       +VV +D   + V VGP+E+     +    +N L
Sbjct: 230 VGEHEGASLYTLGQRKGLGLYKTHLERYVVGVDPERNVVYVGPKEACYFEGLEGEGLNLL 289

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
            +   E          V++R    PV   V+     + + F      V  GQ+ VFY  +
Sbjct: 290 AELPEE--------VEVQVRYRTPPVRAKVESLSP-LRLRFAHPVFAVTPGQSAVFYRGE 340

Query: 372 SNEARVLGGGII 383
               R+LGG +I
Sbjct: 341 ----RLLGGAVI 348


>gi|71897067|ref|NP_001026522.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Gallus gallus]
 gi|75571355|sp|Q5ZKW0|MTU1_CHICK RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|53130608|emb|CAG31633.1| hypothetical protein RCJMB04_8p20 [Gallus gallus]
          Length = 424

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 180/396 (45%), Gaps = 44/396 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV  A+SGGVDS+V A LL+R GY V GV ++ ++       +G+C   +D  DA RVC 
Sbjct: 7   RVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDPLD---EQGACSVDRDCEDAYRVCQ 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++  +   Y + + N V       Y  G TP P + CN+ +KF+  L      LGAD 
Sbjct: 64  KLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADA 123

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  DL +DQ++FL   +Q
Sbjct: 124 IATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQ 183

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSD--------SQDICFVQQGKYFDVVK 233
             L    FPLGD+ K  VR +A E GL  +  K +        S  +CF+ +  +   + 
Sbjct: 184 DALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIGERNFEKFLL 243

Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
                    G+ V + + +++G H G   YTIGQR  L   +    FVV  D ++  + V
Sbjct: 244 EYLE--PQPGNFVSIEDKKVMGTHKGWFLYTIGQRARL-AGLQGAWFVVDKDVSTGDIFV 300

Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG- 347
            P     +L    +    ++W+ +    + V D   +C  + R     VP  +  N DG 
Sbjct: 301 APSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGS 360

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V+V   K    +  GQ  VFY  D      LG G I
Sbjct: 361 VWVTLVKPARALTPGQFAVFYKGD----ECLGSGKI 392


>gi|116073367|ref|ZP_01470629.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9916]
 gi|116068672|gb|EAU74424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9916]
          Length = 520

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/383 (36%), Positives = 201/383 (52%), Gaps = 29/383 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CC  + +
Sbjct: 149 LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS------GKGACC-AEGL 201

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + V H+V D+ E F+  ++      YA G TPLPC  CNR VKF  +L+  
Sbjct: 202 VDAAGICEQLGVPHHVVDFREHFKEQIVQFLVDGYAEGVTPLPCSRCNREVKFGPMLAWA 261

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            R+   D +ATGHY R R     D   R  + R +D  +DQSYFL+   Q+ L  L FPL
Sbjct: 262 ERERSIDRIATGHYARVRHGDQSD-NGRHQLLRGLDQRKDQSYFLYDLPQEALGRLVFPL 320

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251
           G++ K   R  A   GL  A K +SQD+C     G     +         EG+IV L+G 
Sbjct: 321 GELTKPDTRLEAERFGLRTAKKPESQDLCLADHHGSMRAFLDTYLP--PREGEIVLLDGT 378

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G+H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V  R      R  +  +NW+
Sbjct: 379 VVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRAEAGTDRCVVGAVNWV 438

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360
                       ++  V++R    PV  +++                  + F++ +  + 
Sbjct: 439 SMAPPAQGAR--YRVEVQVRYRSQPVGAWLEVVPATDADAAGGRPHRCQLQFDEPQFSIT 496

Query: 361 SGQACVFYTSDSNEARVLGGGII 383
            GQA VFY  +    RVLGGG+I
Sbjct: 497 PGQAAVFYDGE----RVLGGGLI 515


>gi|163840418|ref|YP_001624823.1| tRNA-specific 2-thiouridylase MnmA [Renibacterium salmoninarum ATCC
           33209]
 gi|189040507|sp|A9WMS3|MNMA_RENSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|162953894|gb|ABY23409.1| tRNA methyl transferase [Renibacterium salmoninarum ATCC 33209]
          Length = 378

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/379 (36%), Positives = 196/379 (51%), Gaps = 23/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DA +
Sbjct: 1   MKVLAAMSGGVDSAVAAARTVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSTDAWK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + + +YV+D+ ERF+  V+  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACEKLGIPYYVWDFSERFKEDVVDDFIAEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKK 197
           D + TGHY R    V  D      + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVCTGHYAR----VAQDEDGNYELHRASDWAKDQSYVLGVLTHEQLKHSMFPLSDAQTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A K DS DICF+  G     +          G+I+  +G  +G H 
Sbjct: 176 AEVRAEADRRGLSVAKKPDSHDICFISDGDTRGWLAE--KIDMTPGEILDQSGAKVGTHE 233

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQRRGL +      G+P FV+ +    + V+VGP + L ++ I   +I+W G+
Sbjct: 234 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENTVVVGPEQMLAMNEIRGIKISWAGE 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDG---VYVDFEKSEVGVASGQACVFY 368
            + E      F C  ++R+  DPVP    V  +DDG   + V+      GVA GQ  V Y
Sbjct: 294 PIAEVGAGTEFDCMAQVRAHGDPVPARAFVTTDDDGAPLLVVNLIDPLRGVAPGQTVVLY 353

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLG   I  ++
Sbjct: 354 QG----TRVLGQATIDTAR 368


>gi|229826315|ref|ZP_04452384.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC
           49176]
 gi|229789185|gb|EEP25299.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC
           49176]
          Length = 360

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 192/363 (52%), Gaps = 8/363 (2%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSSV A LLK+ GY+V GVT+ ++         G C   Q   DAR+V 
Sbjct: 3   KKVVVGLSGGVDSSVAAYLLKKQGYEVYGVTMDIWTEGAVDTVNGGCLGSQAKEDARKVA 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T+++ + V D   +FR  V+  FA SY  GETP PC  CNR VK+  L       GA+ 
Sbjct: 63  ETLDIPYKVVDVRGKFRENVMNYFADSYKNGETPNPCTLCNRRVKWEALFKGAELFGAEY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R         R  +       +DQ+Y L   TQ+QL     P+GD +K  V
Sbjct: 123 VATGHYAKIRKLA----NGRYTIANSYTAAKDQTYALCNLTQEQLRRTLLPIGDYEKSEV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A E G++IA K DS +ICF+  G Y   +++     A +G+ V ++G +LG H GI+
Sbjct: 179 RKIAAEAGIEIAAKPDSMEICFIPDGDYAGYLEKEYGIAAHKGNFVDVDGNVLGEHRGIV 238

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQR+GLG+A G+P+FV  +   ++ V++   E L   R+    IN++ +   E   
Sbjct: 239 HYTIGQRKGLGIAFGKPMFVKEIRPETNEVVLSDNEGLFTERVVAERINFMAETKEEIEA 298

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D      KIR +       +   +D +  +F + +   A GQ  V Y        V+ G
Sbjct: 299 SDKI-YLAKIRYNHKGGECKLSFEEDRIAAEFLEPQRASAPGQTLVVYN---EAGEVVCG 354

Query: 381 GII 383
           G I
Sbjct: 355 GRI 357


>gi|150025823|ref|YP_001296649.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Flavobacterium psychrophilum JIP02/86]
 gi|205816862|sp|A6H0G9|MNMA_FLAPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149772364|emb|CAL43842.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 395

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/403 (28%), Positives = 194/403 (48%), Gaps = 48/403 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGGVDSSV A LL+  GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +     D  ++++  ++    S Y  G TP P V CNR +KF   + +   LGAD 
Sbjct: 61  EKLGIPFQTVDLSQQYQEKIVDYMFSEYKKGRTPNPDVLCNREIKFDVFMKIALSLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +  DGK    +   +D  +DQSYFL   +Q+QL    FP+G++ K  V
Sbjct: 121 VATGHYCR-KGEIEVDGKPVYQLLAGVDDNKDQSYFLCQLSQEQLAKSLFPIGELTKPQV 179

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249
           R++A ++ L  A+K DSQ +CF+ + +  + +++       EG I  ++           
Sbjct: 180 REIATKIELVTAEKKDSQGLCFIGKVRLPEFLQQQLK--PKEGLIFEVDATNQIYNQEKI 237

Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKN 286
                                  +++G+H G   +TIGQR+GL      E LF++  +  
Sbjct: 238 NFDSVQEKLAFEAKDIQYTPEVAKVVGKHQGAHYFTIGQRKGLNVGGTKEALFIISTNVE 297

Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           ++ +  G       L    +++   EI+W+   L         +   +IR  Q+     +
Sbjct: 298 TNAIYTGQGHKHPGLFKKALFVTNDEIHWIRPDLALTN-GQTIQVMARIRYRQELQKATL 356

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + ++G+YV+FE  +  +  GQ   ++  D     ++G G+IS
Sbjct: 357 HQFENGLYVEFETPQSAITQGQFVSWHIGD----ELIGSGVIS 395


>gi|320335245|ref|YP_004171956.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM
           21211]
 gi|319756534|gb|ADV68291.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM
           21211]
          Length = 386

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 199/373 (53%), Gaps = 15/373 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+ AMSGGVDSSV A LLK  GYDVIG  ++ +   K +    SCC+    Y+ARRV
Sbjct: 9   GKRVLCAMSGGVDSSVSAQLLKDQGYDVIGAMMRFWPDNKRTDTFDSCCSPDAAYEARRV 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + V  Y+ DY + F+  ++ PF   YA G TP PCV+CN  VKF  L+   R LG +
Sbjct: 69  ADQVGVPFYLLDYRDEFKRNIMDPFLEDYARGRTPNPCVNCNTKVKFDALVKKARMLGCE 128

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       DG       R  D  +DQ+YFL+ T +  L  + FP+G M+K  
Sbjct: 129 YVATGHYVRREDVPTADGGVEVQFHRGDDPRKDQTYFLWGTPRDALKYILFPVGQMEKPR 188

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR++A E GL  A K +SQ+ICFV  G   D V          G IV +  G ++G H G
Sbjct: 189 VREIAEEHGLLTAQKPESQNICFVP-GAVKDFVAEFVPQ--RTGYIVDIHTGDVVGEHLG 245

Query: 259 IINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
              YT+GQ++GLG+    E  FVV+LD +++ V VG +   +   +  R  N+L D    
Sbjct: 246 TQFYTLGQKKGLGLYKTHEVRFVVHLDPDTNIVWVGDQVDCQWTGVRARGANYLLDVA-- 303

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  +  V++R    PV   V + ++DG  + F +++  V  GQ+ V Y       R
Sbjct: 304 ---DLPQEVDVQVRYRTKPVRARVLRADEDGFELAFAEAQFAVTPGQSAVLYDG----TR 356

Query: 377 VLGGGIISGSKRS 389
           +LGGG+I    R 
Sbjct: 357 LLGGGLIEDHVRD 369


>gi|323341801|ref|ZP_08082034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464226|gb|EFY09419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 372

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 190/386 (49%), Gaps = 34/386 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+V+V +SGGVDS+V A +LK  G+DV    ++ ++S   +   G+       C    D 
Sbjct: 1   MKVLVGLSGGVDSAVAAHILKSQGHDVTCAFMRNWDSFANNDILGNPTIKDDMCSQEVDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+RV D + +     DY + + + V   F +    G TP P + CNR VKF       
Sbjct: 61  DDAKRVADHLGLELLRVDYVKEYWDHVFSFFLAETERGNTPNPDILCNRFVKFDAFYDFM 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G + LATGHY  +R     DGK    M R +D  +DQ+YFL     + L  + FPLG
Sbjct: 121 DANGFEALATGHYAITR-----DGK----MYRAVDQNKDQTYFLSRVRPEVLPRVLFPLG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
            + K+ VR +A E+ L +A K DS  ICF+ + +Y D +K     +  EGDI+ ++  ++
Sbjct: 172 SLTKDEVRRIALELDLPVATKKDSTGICFIGERQYRDFLKNYLKDV--EGDIIDVDTQKV 229

Query: 253 LGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           LG+H G++ YTIGQR GL ++    P FVV  D +++R+ VG       L      + E+
Sbjct: 230 LGKHQGVMFYTIGQRHGLDISTAVGPWFVVGKDLSTNRIYVGKGADHPMLFAGAAEIAEM 289

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           NW  D   +       +C  K R  Q  + V +   D+  + V+       V  GQ  VF
Sbjct: 290 NWFTDEKVD------LECTAKFRYRQKDIKVRISWLDETRLRVEMIDDVKSVTLGQEAVF 343

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVE 393
           Y  +      LGGG I     +D  E
Sbjct: 344 YLGE----ECLGGGRIDRVFDTDGNE 365


>gi|300771093|ref|ZP_07080969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761763|gb|EFK58583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 363

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 204/370 (55%), Gaps = 18/370 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGGVDSSV A +L   GY+VIG+T++ ++  S   S ++  CC+   + DA
Sbjct: 3   KRGRVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       H++ D  + F + VI  F   Y AG TP PCV CN  +K+  L+    +L
Sbjct: 63  RALAVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   RL+       R ++ +  D  +DQSY L+  TQ+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRLH----ENGRHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFT 178

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K+ +R +A +MG +++A+KS+S +ICFV    Y   ++     +      G+ +  +G +
Sbjct: 179 KKEIRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   +TIGQR+GLG+A+G+P+FV+ +   S+ V++G    LE  + Y+R IN + 
Sbjct: 239 VGQHIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVK 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 ++ +  +   KIR         + +  D + VDFE    G+A GQ+ VFY  + 
Sbjct: 299 YA----SISEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHHVKGIAPGQSAVFYEGND 354

Query: 373 NEARVLGGGI 382
               ++GGG 
Sbjct: 355 ----LIGGGF 360


>gi|284929056|ref|YP_003421578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [cyanobacterium UCYN-A]
 gi|284809515|gb|ADB95220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [cyanobacterium UCYN-A]
          Length = 352

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 138/366 (37%), Positives = 202/366 (55%), Gaps = 23/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSSV AA L   GY+V G+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KIVVGLSGGVDSSVAAASLCDQGYEVSGLTLWLM------KGKGQCCSEGMV-DAAHICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +N+ HY+ D +E F+  +I    S Y +G TPLPC  CNR+VKF  +L   + +L  D+
Sbjct: 56  QLNIPHYIVDAKELFKKNIIDYLVSGYKSGITPLPCSQCNRSVKFKPMLDYAQQELDCDL 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     D   +  + R +D  +DQSYFL+   Q  L    FPLG+  KE  
Sbjct: 116 IATGHYARIRYDKETD---KYKLLRAIDPNKDQSYFLYDLPQDILAKTIFPLGEQTKEDT 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E  L  A+K +SQD+C ++  G     +++        GDIV+  G++LG H GI
Sbjct: 173 RRMATEFKLRTANKPESQDLCLIESYGSMASFLEKYIK--PQTGDIVNSKGEVLGTHKGI 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            NYTIGQR+GLG++  EPL+V+ L+  +++V+VG R         ++++NW+        
Sbjct: 231 HNYTIGQRKGLGISSSEPLYVLKLNLYNNQVVVGNRTEGFHSSCIIKDVNWISIS----K 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                   V++R     V   +    ++   + FE+S+ G+ +GQA V Y  D     VL
Sbjct: 287 PDISMNVKVQVRYRSLAVSATIIPVENNRYKLIFEQSQFGITAGQAAVLYDDDI----VL 342

Query: 379 GGGIIS 384
            GGII 
Sbjct: 343 AGGIIE 348


>gi|320449214|ref|YP_004201310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus scotoductus SA-01]
 gi|320149383|gb|ADW20761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus scotoductus SA-01]
          Length = 372

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 191/373 (51%), Gaps = 36/373 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA---------SKRKGSCCAGQD 72
           +V+VAMSGGVDSSV A LLK  GY+V+G  ++ +               +   SCC  + 
Sbjct: 3   KVLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPEEPPRPTLDIPHKGRAWESCCTPEA 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            Y+ARRV + +++  Y+ DY E F   +I PF   YA G TP PC  CN  VKF  LL  
Sbjct: 63  AYEARRVAEILDIPFYLLDYRETFEEEIIQPFLKDYAQGRTPNPCARCNTFVKFGALLKQ 122

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++LG D +ATGHY+R              + R +D  +DQSYFL+ T ++ L  L FP+
Sbjct: 123 AQRLGLDYVATGHYVRREGES---------LLRGIDPLKDQSYFLWGTPKEALPHLLFPV 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQ 251
           G M K  VR LA   GL  A K +SQ++CFV  G   + ++         G +V  L G+
Sbjct: 174 GGMTKAEVRALAERAGLPTARKPESQNLCFVA-GDLKEFLRERLE--VRPGPLVDALTGE 230

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
           ++G H G   YTIGQR+GLG+       +VV +D  ++ V VGPRE+     +   E N 
Sbjct: 231 VVGEHQGASLYTIGQRKGLGLFKPHLERYVVGVDPLANVVYVGPREATLWLGLEGEEANL 290

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
           L +   E          V++R    PV   V+   + + + F      V  GQ+ VFY  
Sbjct: 291 LAELPEE--------VEVQVRYRTPPVRAKVESL-NPLRLRFATPVFAVTPGQSAVFYQG 341

Query: 371 DSNEARVLGGGII 383
           +    R+LGG +I
Sbjct: 342 E----RLLGGAVI 350


>gi|297624808|ref|YP_003706242.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Truepera radiovictrix DSM 17093]
 gi|297165988|gb|ADI15699.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Truepera radiovictrix DSM 17093]
          Length = 372

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 196/387 (50%), Gaps = 23/387 (5%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +++ +  L     D  PK  RV+ AMSGGVDSS+ AALLK  GY V G  L+ +   +  
Sbjct: 1   MLAPSPTLEPQTTDAAPKG-RVLCAMSGGVDSSLAAALLKEAGYAVQGAMLRFWPDDRPK 59

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                CC+    +DARRV D I+V  Y+ D  E+F   VI PF  +Y AG TP PCV CN
Sbjct: 60  GAFDLCCSPDAAFDARRVADAIDVPFYLLDAREQFDEVVISPFVPTYEAGRTPNPCVWCN 119

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           R +KF   L   R+LG D +ATGHY+R       DG     + R  D  +DQ+YFL+A  
Sbjct: 120 REIKFGTFLKKARRLGCDYIATGHYVRRV-----DGPGGVELHRGEDDTKDQTYFLWALE 174

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ--GKYFDVVKRINAGI 239
           +  L  L FPLG + K  VR+LA   G   ADK  S  +CF+      Y         G 
Sbjct: 175 RSILPHLLFPLGALSKTQVRELAEARGFATADKRSSHGLCFITTSVKDYLRDFSERRPGA 234

Query: 240 ALEGDIVHLNG-QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRES 297
            L+      +G + +G H+G+  YTIGQRRGLG+       FVV L   ++ VIVG RE 
Sbjct: 235 VLDA----SDGFKKVGEHSGVQFYTIGQRRGLGLYHSHLERFVVDLRSETNEVIVGTREM 290

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
                +   + NWL      DA     +  V+ R  Q PVP  V+ +     + F++   
Sbjct: 291 CHWRGLRAEQANWL-----LDAAEVPERVLVQTRYRQRPVPASVRLSGSSFELRFDEPMF 345

Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384
            V  GQ+ V Y       R+LGGG+I+
Sbjct: 346 AVTLGQSAVLYHG----TRLLGGGVIT 368


>gi|148377683|ref|YP_001256559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma agalactiae PG2]
 gi|205816906|sp|A5IYK6|MNMA_MYCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148291729|emb|CAL59115.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
           [Mycoplasma agalactiae PG2]
          Length = 374

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 172/381 (45%), Gaps = 36/381 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 4   KKKVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQD 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA  V + + +  +  D+   + N V   F S Y AG TP P + CN+ +KF      
Sbjct: 64  YQDALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDY 123

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +A GHY +       DG+    + R  D  +DQ+YFL   + +QL  +  P
Sbjct: 124 AFNNLGADYIAMGHYAKV-----TDGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMP 174

Query: 192 LGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           L +   KE VR +A+E  L  A K DS  ICF+ + K+   ++         GDIV +  
Sbjct: 175 LAEFSSKEEVRKIAQEQDLITASKKDSTGICFIGERKFTKFLQNYIP--MQPGDIVDIRT 232

Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYL 305
            + LG+H G   YTIGQR+GL      EP +V   D   + + V P   L       +  
Sbjct: 233 NKKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLSYLTSDALLA 292

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQA 364
             +    D        D      K R  Q  +PV ++   ++ + V +      V  GQ 
Sbjct: 293 TGLTLNHDDF------DHNNLSAKFRYRQQDIPVTIELLPNNTIKVYYPSESQAVTPGQQ 346

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            V Y       + LGG +I  
Sbjct: 347 VVLYEG----QKCLGGAVIEK 363


>gi|227540270|ref|ZP_03970319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239914|gb|EEI89929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 363

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 204/370 (55%), Gaps = 18/370 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  RV+VAMSGGVDSSV A +L   GY+VIG+T++ ++  S   S ++  CC+   + DA
Sbjct: 3   KRGRVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       H++ D  + F + VI  F   Y AG TP PCV CN  +K+  L+    +L
Sbjct: 63  RALAVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   RL+       R ++ +  D  +DQSY L+  TQ+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRLH----ENGRHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFT 178

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K+ +R +A +MG +++A+KS+S +ICFV    Y   ++     +      G+ +  +G +
Sbjct: 179 KKEIRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   +TIGQR+GLG+A+G+P+FV+ +   S+ V++G    LE  + Y+R IN + 
Sbjct: 239 VGQHIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVK 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 ++ +  +   KIR         + +  D + VDFE    G+A GQ+ VFY  + 
Sbjct: 299 YA----SLSEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHYVKGIAPGQSAVFYEGND 354

Query: 373 NEARVLGGGI 382
               ++GGG 
Sbjct: 355 ----LIGGGF 360


>gi|269114904|ref|YP_003302667.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma hominis]
 gi|268322529|emb|CAX37264.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma hominis ATCC 23114]
          Length = 370

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 36/380 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             RVV+ MSGGVDSSV   LL++ GYDV+G+ ++ ++S   +   G+       C   QD
Sbjct: 2   KKRVVLGMSGGVDSSVCGYLLQKQGYDVVGLFMRNWDSFLNNDILGNENITQNICPQEQD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V   +N+  Y  D+ + +   V       Y  G TP P + CN+ +KF      
Sbjct: 62  YLDAKAVASQLNIQLYRIDFVKEYWENVFNYLIDEYKKGRTPNPDIFCNKFIKFKAFSDY 121

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             ++L AD +A GHY  +      DG+    + R  D  +DQSYFL   +  QL  + FP
Sbjct: 122 AFKELKADYIAMGHYANAI-----DGE----LFRAQDDNKDQSYFLAQLSPDQLKKVIFP 172

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           L ++ K  VR++A+++ L  A K DS  ICF+ +  +   ++      A  G+I+ + +G
Sbjct: 173 LANITKPEVREIAKQLNLSTAMKKDSTGICFIGERHFTKFLENYIP--AQPGNIIDIFSG 230

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306
           +++G+H G + YTIGQR+GL +   E P FVV  + +   + V   +    L  +++   
Sbjct: 231 KVVGKHIGAMYYTIGQRKGLNLGGYEKPYFVVGHNLSKKEIYVTNDDHIDYLMSNKLIAT 290

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
             N +          +      K R  Q  + + ++  + + + V +  +E  V  GQ  
Sbjct: 291 NFNQIS------KEFNFANLTAKFRYRQKDIKITLKILDGNKIEVCYPNTE-AVTPGQQV 343

Query: 366 VFYTSDSNEARVLGGGIISG 385
           V Y  +    +V+GG II  
Sbjct: 344 VIYDGN----KVVGGAIIDK 359


>gi|163781841|ref|ZP_02176841.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883061|gb|EDP76565.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 356

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/369 (41%), Positives = 210/369 (56%), Gaps = 20/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARR 78
           MRV V MSGGVDSSV A L+K  G++VIGVTL+ +     +       CC+ +DV DA R
Sbjct: 1   MRVAVGMSGGVDSSVTALLMKEKGHEVIGVTLRFHTIEACEVEGTHNVCCSPKDVQDAAR 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V   + + H  FD+E  F+  VI  F   Y+ G TP PC  CNR VK        R +  
Sbjct: 61  VSQKLGIPHLTFDWERIFKERVIDYFVEEYSRGRTPNPCAVCNREVKTGYFARYLRAVAD 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LATGHY R    + +D    R++ R  D +RDQSYFL    ++ L  L FPLG+M K
Sbjct: 121 IDRLATGHYAR----IEEDPSFGRVIKRGTDRKRDQSYFLALVRREDLDLLEFPLGNMTK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR+LAR  GL++ADK DSQ++CF+      + +++I      EG+I H++G+ LGRH+
Sbjct: 177 EEVRELARSYGLEVADKRDSQEVCFLMGKSPGEYLEKIVGL--REGEIRHVSGKTLGRHS 234

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI N+TIGQRRGLG++  +PL+VV +D +++ V VG  E L   ++Y+RE+N        
Sbjct: 235 GIYNFTIGQRRGLGISYSKPLYVVDIDASTNTVFVGEEEYLYNDKLYVRELN------LH 288

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             +        +IR    PV V  V+R  DG  V F +   G+  GQ   FY+ D     
Sbjct: 289 VPMERWEDVSAQIRYRHSPVRVESVKRTSDGYEVKFREEVRGITPGQVVAFYSGDI---- 344

Query: 377 VLGGGIISG 385
           +LGGGII  
Sbjct: 345 LLGGGIIEA 353


>gi|88608438|ref|YP_506353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia sennetsu str. Miyayama]
 gi|123491921|sp|Q2GDU3|MNMA_NEOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88600607|gb|ABD46075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neorickettsia sennetsu str. Miyayama]
          Length = 371

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/370 (45%), Positives = 236/370 (63%), Gaps = 15/370 (4%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVY 74
           K   D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+N+  +++  + +CCAG D++
Sbjct: 14  KAYNDVKVMVAMSGGVDSSTVAAYLHRVGYKVIGVTLQLHNNFTSTQTNRKTCCAGSDIF 73

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA+RV       HYV + EE FR  VI  FA SY  GETP+PCV CN+TVKF DL+ + +
Sbjct: 74  DAKRVAAQFGFLHYVVNMEETFRKEVIENFAESYLKGETPVPCVKCNQTVKFRDLMKIAK 133

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            L  D LATGHY+R              + + +D  +DQSYFLF TT++QL  LRFPLG+
Sbjct: 134 SLSVDALATGHYVRRLT-----TTNGVELHKGIDPSKDQSYFLFNTTREQLEFLRFPLGN 188

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           +KK   RDLAR++ +DI++K +SQDICFV    Y DV+K+        G I+  +G++LG
Sbjct: 189 LKKSETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQRPGKILSTDGEVLG 248

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            HNG I+YTIGQR GL ++   PL+VV +D  ++ +IVG R+ L+   +Y++E+NWL   
Sbjct: 249 THNGTIHYTIGQRHGLQLSAPIPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWLD-- 306

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSN 373
                +  G +C VK+RS  D V  ++  N + + V   E+ +  +A GQACV Y     
Sbjct: 307 --RKELTAGLECEVKLRSGADTVKGYLYPNGELLKVSLAEEPKCAIAPGQACVMYHG--- 361

Query: 374 EARVLGGGII 383
            ++VLGGG I
Sbjct: 362 -SKVLGGGWI 370


>gi|313772254|gb|EFS38220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL074PA1]
 gi|313810119|gb|EFS47840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL083PA1]
 gi|313830448|gb|EFS68162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL007PA1]
 gi|313833819|gb|EFS71533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL056PA1]
 gi|314973449|gb|EFT17545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL053PA1]
 gi|314976129|gb|EFT20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL045PA1]
 gi|314983850|gb|EFT27942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA1]
 gi|315080547|gb|EFT52523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL078PA1]
 gi|315095996|gb|EFT67972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL038PA1]
 gi|327326276|gb|EGE68066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL096PA2]
 gi|327445830|gb|EGE92484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL043PA2]
 gi|327448188|gb|EGE94842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL043PA1]
 gi|328760764|gb|EGF74330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL099PA1]
          Length = 360

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +VR  A 
Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG  ++TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTRGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W          V
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           + +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G  
Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGVKAEQA 359


>gi|326800569|ref|YP_004318388.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21]
 gi|326551333|gb|ADZ79718.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21]
          Length = 362

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 200/370 (54%), Gaps = 18/370 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++ ++  S   S ++  CC+   + DA
Sbjct: 3   KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGGSTKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D  + F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RALAVGYGFPHYILDIRDEFGDFVINNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   RL        R ++ +  D  +DQSY L+  +Q+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRLQDS----GRYVISKGRDEHKDQSYVLWGVSQKNLARTKFPLGSFT 178

Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A EMG +++A+KS+S +ICFV    Y   ++     I      G+ +  +G +
Sbjct: 179 KAEIRQMALEMGQVELANKSESYEICFVPDNDYRSFLRHRVEDIDERIGAGNFILSDGTV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A+G P+FV+ +   S+ V++G  E L+    Y+R IN + 
Sbjct: 239 VGKHAGYPYYTIGQRKGLGIALGRPVFVIQILPESNTVVLGSEEELQKDTAYVRNINLI- 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                + + +  +   KIR         +   +  + VDFE    G+A GQ+ VFY  + 
Sbjct: 298 ---KYEHIPEPMEAVTKIRYKDAGAISRIVEENGSMKVDFEHYVKGIAPGQSAVFYEGND 354

Query: 373 NEARVLGGGI 382
               +LGGG 
Sbjct: 355 ----LLGGGF 360


>gi|255023815|ref|ZP_05295801.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J1-208]
          Length = 291

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 14/301 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + FPLG
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M+K  VR++A++ GL  A+K DS  ICF+ +  +   +       A  G++  LNG++L
Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   GEP FVV  D   + + V      E+L    +   +I+
Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290

Query: 310 W 310
           +
Sbjct: 291 F 291


>gi|314972469|gb|EFT16566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL037PA3]
          Length = 360

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/375 (37%), Positives = 196/375 (52%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGG+DS+V AA L   G+DV GV L L  N R   +    CC+ +D + ARR  D + +
Sbjct: 1   MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFAARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y ++++  G        + R +D  +DQSY L    Q QL    FPLG+  K  VR  A 
Sbjct: 121 YAQAKVIDG-----VTKLYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +       + +G+I   +G ++GRHNG   +TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGRHNGYHRFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L V+ I      W           
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWCSGE-----PA 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           D +   V++R+  DPVP  +     GV V+ E    GVA GQA VFY  D     V+G  
Sbjct: 289 DTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGTTAEQA 359


>gi|313678598|ref|YP_004056338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma bovis PG45]
 gi|312950108|gb|ADR24703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma bovis PG45]
          Length = 374

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 174/381 (45%), Gaps = 36/381 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S   +   G+       C   QD
Sbjct: 4   KKKVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQD 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +DA  V + + +  +  D+   + N V   F S Y AG TP P + CN+ +KF      
Sbjct: 64  YHDALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDY 123

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LGAD +A GHY +       DG+    + R  D  +DQ+YFL   + +QL  +  P
Sbjct: 124 AFNNLGADYIAMGHYAKV-----TDGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMP 174

Query: 192 LGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           L +   KE VR +A+E GL  A K DS  ICF+ + K+   ++         GDIV +  
Sbjct: 175 LAEFNSKEEVRKIAQEQGLITASKKDSTGICFIGERKFTKFLQNYIP--MQPGDIVDIRT 232

Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYL 305
              LG+H G   YTIGQR+GL      EP +V   D   + + V P   L       +  
Sbjct: 233 NNKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLSYLTSDALLA 292

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQA 364
             +    +        D      K R  Q+ +PV ++   ++ + V +      V  GQ 
Sbjct: 293 TGLTLNHNDF------DHNNLSAKFRYRQENIPVTIELLPNNTIKVYYPSEAQAVTPGQQ 346

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            V Y       + LGG +I  
Sbjct: 347 VVIYEG----QKCLGGAVIEK 363


>gi|313764363|gb|EFS35727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL013PA1]
 gi|313792051|gb|EFS40152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA1]
 gi|313802000|gb|EFS43234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL110PA2]
 gi|313812853|gb|EFS50567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL025PA1]
 gi|313815901|gb|EFS53615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL059PA1]
 gi|313827583|gb|EFS65297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL063PA2]
 gi|313838822|gb|EFS76536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL086PA1]
 gi|314915354|gb|EFS79185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA4]
 gi|314918090|gb|EFS81921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL050PA1]
 gi|314920172|gb|EFS84003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL050PA3]
 gi|314931695|gb|EFS95526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL067PA1]
 gi|314955597|gb|EFS99998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL027PA1]
 gi|314957994|gb|EFT02097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL002PA1]
 gi|314962706|gb|EFT06806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL082PA1]
 gi|314967428|gb|EFT11527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL037PA1]
 gi|315098625|gb|EFT70601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL059PA2]
 gi|315101372|gb|EFT73348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL046PA1]
 gi|315105724|gb|EFT77700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL030PA1]
 gi|315108590|gb|EFT80566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL030PA2]
 gi|327330347|gb|EGE72096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL097PA1]
 gi|327450691|gb|EGE97345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL087PA3]
 gi|327453231|gb|EGE99885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL092PA1]
 gi|327453970|gb|EGF00625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL083PA2]
 gi|328753227|gb|EGF66843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL025PA2]
 gi|328754110|gb|EGF67726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL087PA1]
          Length = 360

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +VR  A 
Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG  ++TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W          V
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           + +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G  
Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGVKAEQA 359


>gi|197122790|ref|YP_002134741.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter sp. K]
 gi|196172639|gb|ACG73612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. K]
          Length = 351

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/366 (42%), Positives = 199/366 (54%), Gaps = 17/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSS  AALL   G++VIGVT+++ +   A  R  SCCA  DV DAR   
Sbjct: 1   MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSDA-ARGRSCCAPDDVEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  YV + E RFR  VI  F   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGA-K 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      ++   RR +    D  +DQSYFL+   Q  L D+ FP+G + K  V
Sbjct: 119 LATGHYARV-----EERGGRRALLTAADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +ADK DSQ+ICFV +G   D V          G+IV   G++LGRH+G+ 
Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDYVALRAPARIRPGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV LD  ++RV+VG  E     R  +RE +W+         
Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAAAARVVVGSAEEASRDRFEVREASWVSGA----PP 289

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               +  VK+R   +     V+      G  V   +   GVA GQA VFY  D     V+
Sbjct: 290 AGAVELRVKVRHRHEGERGTVRAVSGGAGAEVRLARPVRGVAPGQAAVFYAGD----EVV 345

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 346 GGGRIA 351


>gi|58584415|ref|YP_197988.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418731|gb|AAW70746.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contain the PP-loop ATPase domain
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 385

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/387 (45%), Positives = 239/387 (61%), Gaps = 20/387 (5%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKA 60
           + +   +  L  DK P   + VVAMSGGVDSSV A LL R GY VIGVTLQLY  +    
Sbjct: 15  MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSN 74

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +++KG CCAGQD+YDA+RV +     HY+ +YEE F+  VI  FA +Y  G+TP+PC+ C
Sbjct: 75  TRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKC 134

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF DLL VTR LGADVL TGHY+R     G+       +CR +D  +DQSYFLFAT
Sbjct: 135 NQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGE-----VKLCRGIDKSKDQSYFLFAT 189

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T++QL  LRFPLG   K +VR LAR   L I++K DSQDICFV +  Y   + ++     
Sbjct: 190 TKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSI 248

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IV +NG++LG HNGI+N+T+GQR+GLG+A  EPL+VV ++  ++ ++VGP  +L  
Sbjct: 249 QKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQ 308

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVG 358
            +I ++E+NWL      +    G +  VK+RS        +      +  YV        
Sbjct: 309 RKILVKELNWL------EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFS 362

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           ++ GQACV Y  +    +V+GGG I  
Sbjct: 363 ISPGQACVAYKDE----QVIGGGWICS 385


>gi|255324545|ref|ZP_05365662.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
 gi|255298451|gb|EET77751.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
          Length = 365

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/375 (39%), Positives = 198/375 (52%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G++VIGV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 5   MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+  VI  F  SYA GETP PC+ CN  +KF  LL     LG D
Sbjct: 65  CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      + +DG     M R +D  +DQSY L   + ++L    FP+GD  K  
Sbjct: 125 AVATGHYAT----IDEDG----YMRRSLDENKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A   G   A K DS DICF+  G     +          G IV   G  L  H+G 
Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDGNTQAFLGARIGL--RPGMIVDQEGTELKEHDGA 234

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            NYTIGQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G+
Sbjct: 235 WNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTSIQADLLKYLHPGM 294

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371
             D     F+C V++R+    VP    V R  D + ++ ++   GVA GQA V Y  + D
Sbjct: 295 DGD-----FECEVQVRAHGSVVPCIAHVDREADEMRLELKEPLSGVARGQAAVLYLPSPD 349

Query: 372 SNEARVLGGGIISGS 386
                V+G G I G+
Sbjct: 350 ELGDIVIGSGTICGT 364


>gi|205829099|sp|Q5GTC8|MNMA_WOLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/387 (45%), Positives = 239/387 (61%), Gaps = 20/387 (5%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKA 60
           + +   +  L  DK P   + VVAMSGGVDSSV A LL R GY VIGVTLQLY  +    
Sbjct: 1   MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSN 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +++KG CCAGQD+YDA+RV +     HY+ +YEE F+  VI  FA +Y  G+TP+PC+ C
Sbjct: 61  TRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF DLL VTR LGADVL TGHY+R     G+       +CR +D  +DQSYFLFAT
Sbjct: 121 NQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGE-----VKLCRGIDKSKDQSYFLFAT 175

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T++QL  LRFPLG   K +VR LAR   L I++K DSQDICFV +  Y   + ++     
Sbjct: 176 TKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSI 234

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IV +NG++LG HNGI+N+T+GQR+GLG+A  EPL+VV ++  ++ ++VGP  +L  
Sbjct: 235 QKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQ 294

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVG 358
            +I ++E+NWL      +    G +  VK+RS        +      +  YV        
Sbjct: 295 RKILVKELNWL------EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFS 348

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           ++ GQACV Y  +    +V+GGG I  
Sbjct: 349 ISPGQACVAYKDE----QVIGGGWICS 371


>gi|73666857|ref|YP_302873.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyl transferase
           [Ehrlichia canis str. Jake]
 gi|123615064|sp|Q3YSN0|MNMA_EHRCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72393998|gb|AAZ68275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia canis str. Jake]
          Length = 367

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/377 (45%), Positives = 230/377 (61%), Gaps = 17/377 (4%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K+P    VVVAMSGGVDSSV AALL + GY VIG+TLQLYN    +  KG C
Sbjct: 6   KIDPLVKNKSPSSTTVVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYN---NTSGKGGC 62

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V  ++   HY  +YE+ FR  VI  F  +Y  G+TP+PCV CN+ +KF 
Sbjct: 63  CGSTDTQDAKQVASSMGFPHYTLNYEKAFREEVIENFIDTYTQGKTPIPCVKCNQVIKFR 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ LGADVL TGHYIR      DD           D ++DQSYFLFATT +QL  
Sbjct: 123 DLLNTTKSLGADVLVTGHYIRK--VEQDDEIYVY---SSKDTKKDQSYFLFATTIEQLKF 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  K+++R LA+   L +A K DSQ+ICFV    Y + +  +      +G I+ 
Sbjct: 178 LRFPLGNFHKDNIRKLAKYFNLSVAAKPDSQNICFVTDT-YKNTIAHLRPQTVKKGHIID 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG ILG HNGI+N+TIGQRRG+G+A  EPL+V  L+ +++ V VGP+ +L  +++++ +
Sbjct: 237 TNGNILGEHNGIVNFTIGQRRGIGLASKEPLYVTKLNPDTNEVTVGPKSALLQNKLHIED 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           INWL   L +     G    VK+RSS       +  ND +   V  + +   V  GQACV
Sbjct: 297 INWL---LKDKIPYSGLSVKVKLRSSHSGSTAIIYPNDMNKATVILQDTYCTVTPGQACV 353

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D    R+LGGG I
Sbjct: 354 VYDGD----RMLGGGWI 366


>gi|167957606|ref|ZP_02544680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [candidate division TM7 single-cell isolate TM7c]
          Length = 340

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 179/367 (48%), Gaps = 32/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGGVDSS+ AALL   G++V GV ++ ++      +   C    D+ DA+RV 
Sbjct: 1   MKVFVGMSGGVDSSLTAALLIERGHNVTGVYMKNWSQDLPGMK---CPWADDLADAKRVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V+D+E+ +R  V+    S+Y+ G TP P + CN+ VKF   L      GAD+
Sbjct: 58  VQLGIDLKVYDFEKEYRENVVEYMISAYSQGYTPNPDIMCNQEVKFKLFLETALADGADM 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +R            +    D  +DQ+YFL+  T Q L    FPLG+  K+ V
Sbjct: 118 IATGHYATTRDN---------RLFMASDANKDQTYFLYRVTSQALSKTFFPLGEYTKQKV 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R ++ +  L  A K DSQ ICFV +    + + +        GDI+    G+ +G H+G 
Sbjct: 169 RQMSEDRHLFTAKKKDSQGICFVGKIGIREFLSQYVD--TKPGDIIDQKTGKKIGTHDGA 226

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316
           I YTIGQR GL +  G P +VV  +  S+ V V        +      +   +W+ +   
Sbjct: 227 IFYTIGQRHGLNIGGGLPYYVVGKNMQSNEVYVSNDINHNGIWRSETKIESKHWINNVPK 286

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +           +IR     V + +     G  V F++ +  +A GQ+ V Y  +     
Sbjct: 287 DG------NYLARIRHRAPLVKITLL----GSKVIFDEPQRAIAPGQSVVIYDGE----E 332

Query: 377 VLGGGII 383
            LGGGII
Sbjct: 333 CLGGGII 339


>gi|313680731|ref|YP_004058470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanithermus profundus DSM 14977]
 gi|313153446|gb|ADR37297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanithermus profundus DSM 14977]
          Length = 369

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 197/379 (51%), Gaps = 25/379 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDVYD 75
           K  RV+VAMSGGVDSSV AALL   GYDV+G  ++ ++  +   +   + SCC      +
Sbjct: 2   KKPRVLVAMSGGVDSSVAAALLVEQGYDVVGAMMKFWSDEELAESCNSESSCCTPTAALE 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V   + +   + DY E F   ++ PF   YAAG TP PCV CN  VKF  LL   R 
Sbjct: 62  AGWVARQLGIPFELLDYRETFDERIVTPFLEGYAAGRTPNPCVWCNTDVKFDALLEHARA 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA+ +ATGHY+R       +G     + R  D  +DQ+YFL+ T +  L  L FP+G +
Sbjct: 122 IGAEYVATGHYVRRV-----EGPAGVELWRGGDAAKDQTYFLWGTPRAALPHLLFPVGHL 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           +K +VR LA   GL  A K +SQ+ICFV +G   D + +     +  G +V L  G+++G
Sbjct: 177 EKPAVRRLAEARGLITARKPESQNICFV-RGSLRDFLAKHIP--SEPGPLVDLESGEVIG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G   YT+GQR+GLG+       +VV +   ++ V+VGPR ++E   +    +N    
Sbjct: 234 EHAGARFYTVGQRKGLGLWKSHLERYVVEVRPETNEVVVGPRAAVEWWGLEASGLN---- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVFYTS 370
            L  D      +    +R    PV   V   D       + FE+ +  VA GQ+ V Y  
Sbjct: 290 -LLLDPAGLPDRIEAMVRYRTRPVGARVLELDPTAGRFRLRFERPQFAVAPGQSVVLYAG 348

Query: 371 DSNEARVLGGGIISGSKRS 389
           D    R+LGGG I  ++ +
Sbjct: 349 D----RLLGGGFIERAREN 363


>gi|284097781|ref|ZP_06385771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283830707|gb|EFC34827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 372

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 192/383 (50%), Gaps = 26/383 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS------KRKGSCCAGQDVYDARRVC 80
           MSGGVDSSV A LL   GYDV GVTLQ++     +        +  CC    V  AR V 
Sbjct: 1   MSGGVDSSVAALLLTEQGYDVQGVTLQVWEPEDDNAAVTKKWEERGCC---KVGLARHVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H V D  E FR  VI  F + Y  G TP PCV CN  VKF  L  + +  G D 
Sbjct: 58  GRLGIPHEVVDTRETFRKNVIDDFVAGYLGGTTPNPCVRCNEWVKFGGLYELAKDRGIDF 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D+G     + R  D ++DQSYFL+      L  + FP+G ++K  V
Sbjct: 118 VATGHYARVVPV--DEGVG---LFRGADGKKDQSYFLYRLPAAWLPHILFPVGHLQKTEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
              A E+ L   +  +SQ+ICFV QG Y   +          G  +   G+ +G H GI 
Sbjct: 173 WARAEELDLPADEMKESQEICFVTQGDYRTFLTEEAPQALRPGPFLDPEGRKIGEHRGIA 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT GQR+GLG+A GE L+V  ++  ++ V++G  E L      ++++NWL D L E   
Sbjct: 233 FYTPGQRKGLGIARGERLYVKEVNPETNAVVLGRAEDLSRQTCTVQDVNWLADTLPETLD 292

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                  +K R +   V   VQ      + ++F++ +  ++ GQ+ V Y +D    RVLG
Sbjct: 293 ----HVAIKYRYASPAVSGQVQPHTAGTLSIEFKEPQQALSPGQSLVLYQAD----RVLG 344

Query: 380 GGII---SGSKRSDAVEESLLSV 399
           GGII      + S A+ E+  S 
Sbjct: 345 GGIIQPFERHRNSAALSETPRSS 367


>gi|239616529|ref|YP_002939851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505360|gb|ACR78847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kosmotoga olearia TBF 19.5.1]
          Length = 359

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 195/366 (53%), Gaps = 17/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVYDARR 78
           ++ VA+SGGVDS+V AA+LK +G+DV+G  ++           ++K  CC+  D  D  +
Sbjct: 4   KIGVALSGGVDSAVAAAILKAEGHDVVGYHMKNLPDTLFELVPEKKKVCCSPSDTIDTHK 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +   +    + FR  +I  F   Y AG+TP PCV CN  +KF  L+      G 
Sbjct: 64  IAAKLGIELRIVKLNDIFRKEIIDYFIREYQAGKTPNPCVRCNDLMKFGALMEKAFGDGM 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +  A+GHY R   +     K    + R +   +DQ+YFL    +++L  + FP G+M KE
Sbjct: 124 EKFASGHYARIVEHP----KYGLSLARGVAKYKDQAYFLSRIKRRKLPYIIFPNGNMTKE 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +RD+ARE+GL +  K +SQ++CF+    Y   +          G+IV L G +LGRH G
Sbjct: 180 EIRDIARELGLPVHSKKESQELCFIPDNDYRRFLLE-EGIEIKPGEIVDLEGNVLGRHKG 238

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT+GQRRGLG+   + L+VV LD + +RV+VGP+E++   +    E NWL D   ++
Sbjct: 239 LAFYTVGQRRGLGIVSDKKLYVVALDADKNRVVVGPKEAVMRKKFRAIEPNWLADLDEKE 298

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                 +C  +IRS+       ++   + V V+F+K  + +  GQ  VFY  +     VL
Sbjct: 299 -----LRCQCQIRSNMKAQGATIRIFSNIVEVEFDKPALAITPGQLAVFYDGNI----VL 349

Query: 379 GGGIIS 384
           G   I 
Sbjct: 350 GSAFIE 355


>gi|15829029|ref|NP_326389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pulmonis UAB CTIP]
 gi|24638329|sp|Q98Q11|MNMA_MYCPU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14089973|emb|CAC13731.1| TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           [Mycoplasma pulmonis]
          Length = 371

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 183/377 (48%), Gaps = 35/377 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           ++V+ +SGGVDSSV A LLK+ G++VIG+ ++ ++S   S   G+       C   QD  
Sbjct: 3   KIVIGLSGGVDSSVAAYLLKQQGHEVIGLFMRNWDSLVNSDILGNSSLNQSLCPQEQDFQ 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA RV   I +  Y  D+ + + ++V       Y  G TP P + CN+ +KF    +   
Sbjct: 63  DASRVAKQIGIPIYRVDFIKEYWDSVFENLIEQYQNGFTPNPDILCNKYIKFDKFFNYAI 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GAD +A GHY  ++            + R +D  +DQSYFL     Q L  + FPLG
Sbjct: 123 EKFGADYVAMGHYAIAKEGN---------LYRGIDQSKDQSYFLTQVRSQVLEKVIFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           +M+K  VR +A+E  L  A+K DS  ICF+ + K+ D ++         G IV +   +I
Sbjct: 174 NMEKSEVRRIAQEANLYTANKKDSTGICFIGERKFTDFLQNYIP--TQPGTIVDITTKKI 231

Query: 253 LGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +G H G + YT+GQR+GL    M EP FVV  D    +V V P   ++ L  + ++ + +
Sbjct: 232 VGNHIGAMYYTLGQRKGLNLGGMKEPYFVVGHDLEKKQVFVAPASEKKWLTSNWLFAQNL 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367
           N        +   +      K R  Q  V V V+   +D + V + +    V  GQ    
Sbjct: 292 N------LNNHDFNPENLSAKFRYRQKDVRVKVEFLENDQIKVYYPEGFEAVTPGQQIAL 345

Query: 368 YTSDSNEARVLGGGIIS 384
           Y       + LGG +I 
Sbjct: 346 YDG----QKCLGGAVIK 358


>gi|255532078|ref|YP_003092450.1| tRNA-specific 2-thiouridylase MnmA [Pedobacter heparinus DSM 2366]
 gi|255345062|gb|ACU04388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter heparinus DSM 2366]
          Length = 363

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 196/370 (52%), Gaps = 17/370 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           K  R++VAMSGGVDSSV A +L   GY+VIG+T++ ++  +  +S ++  CC+   + DA
Sbjct: 3   KKGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +       HY+ D  + F + VI  F   Y AG TP PCV CN  +K+  LL    +L
Sbjct: 63  RTLAVNYGFPHYILDIRDEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKL 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +ATGHY   R         R ++ +  D  +DQSY L+  +Q+ L   +FPLG   
Sbjct: 123 DCEFIATGHYANIRQQDS----GRYVISKGKDENKDQSYVLWGVSQENLSRTQFPLGSFA 178

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A +MG  ++A KS+S +ICFV    Y   +K     +      G+ +  NG +
Sbjct: 179 KSEIRQMALDMGQEELAKKSESYEICFVPDNDYRAFLKHKVEDLEQRVAGGNFITSNGMV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GLG+A GEP+FV  +   S+ V++G  + LE     +R +N + 
Sbjct: 239 VGQHKGYPFYTIGQRKGLGIAFGEPMFVTQILPESNTVVLGRADELERKEAMVRNLNLVK 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                + + +      KIR     +   + +  D + V F+ +   +A GQ+ VFY  + 
Sbjct: 299 YESIHEPMDN---VVTKIRYKDAGMLSTIVQEKDKMRVVFDHNVSAIAPGQSAVFYEGND 355

Query: 373 NEARVLGGGI 382
               +LGGG 
Sbjct: 356 ----LLGGGF 361


>gi|15806762|ref|NP_295482.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus radiodurans R1]
 gi|6459532|gb|AAF11314.1|AE002017_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus radiodurans R1]
          Length = 413

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 203/377 (53%), Gaps = 19/377 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  +  RV+ AMSGGVDSSV A+LLK  GY VIG  ++ +   K +    SCC+    Y
Sbjct: 47  SRAAQGERVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAY 106

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +ARRV + + V  Y+ DY E F+  ++ PF   YA G TP PCV+CN  VKF +L+   +
Sbjct: 107 EARRVAEQVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAK 166

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LG   +ATGHY++      D+ +      R  D  +DQ+YFL+ T +  L  + FP+G+
Sbjct: 167 MLGCRYVATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGE 222

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           ++K  VR++A E GL  A K +SQ+ICFV  GK  D V         +G I  +  G+++
Sbjct: 223 LEKPQVREIAAERGLLTAQKPESQNICFVP-GKVQDFVAEHLPQA--QGYIREIATGEVV 279

Query: 254 GRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G H G   YT+GQ++GLG+        VV+LD +S+ V VG  +      +   + N+L 
Sbjct: 280 GEHLGTQFYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYL- 338

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                D      +  V++R    PV   V   + +G  ++F + +  VA GQ+ V Y   
Sbjct: 339 ----LDLAELPTELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG- 393

Query: 372 SNEARVLGGGIISGSKR 388
              +R+LGGG+I+   R
Sbjct: 394 ---SRLLGGGLIADHAR 407


>gi|149921054|ref|ZP_01909513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Plesiocystis pacifica SIR-1]
 gi|149818058|gb|EDM77515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Plesiocystis pacifica SIR-1]
          Length = 367

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/375 (41%), Positives = 213/375 (56%), Gaps = 18/375 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79
           MRVV AMSGGVDSSV AAL+   G++VIG+T+ LY+++   K R G+CC+  ++  ARR 
Sbjct: 1   MRVVCAMSGGVDSSVAAALMVEAGHEVIGLTMALYDAKGERKGRGGTCCSPAEIDLARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + V HY  D  ERF+ AVI  FA  Y AG TP PC  CN  VKF  LL+  R LGA+
Sbjct: 61  CDLLGVPHYTVDERERFQAAVIDDFAREYLAGRTPNPCARCNEHVKFGPLLARARALGAE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +L TGHY +       DG+    + R +D  +DQSYFLFA  ++ L ++ FPLG   K  
Sbjct: 121 LLVTGHYAQIV-----DGEAGPALHRGVDASKDQSYFLFAMGRETLAEVAFPLGAWSKAQ 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL------EGDIVHLNGQIL 253
           VR+ ARE+G+  AD  DSQ++CFV  G + +VV+     + L       G I   +G +L
Sbjct: 176 VREKARELGMPNADAPDSQELCFVPGGDHGEVVEARAKALGLDTARLEPGPIRDESGAVL 235

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H GI   T+GQRRGLGV+   P +V+ +  +   V+VG  E LEV  + + +   L D
Sbjct: 236 GEHRGIHRVTVGQRRGLGVSADRPRYVLRVLPSERAVVVGDPEGLEVRELMVGDFRALAD 295

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
               + +       V++R      P  V+   +G + V F++    VA GQA V Y  + 
Sbjct: 296 LPVGEPIA----ARVQVRHRSAASPATVEILGEGALKVRFDQPIRAVAPGQAAVVYAGER 351

Query: 373 N-EARVLGGGIISGS 386
           +   RVLGGG I  +
Sbjct: 352 DAGDRVLGGGWIRSA 366


>gi|237785842|ref|YP_002906547.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|259495826|sp|C4LJJ9|MNMA_CORK4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|237758754|gb|ACR18004.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 372

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 199/372 (53%), Gaps = 23/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA L  +G++VIGV L L  S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVMAAMSGGVDSSVAAARLVAEGHEVIGVHLAL-ASTPTTLRVGSRGCCSLEDSGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RFR  V+ PF +SY  GETP PC+ CN  +KF  LL     LG 
Sbjct: 60  VADALGIPFYVWDFSDRFREDVVDPFINSYEMGETPNPCLRCNEKIKFQALLDRGIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R +     DG+    + R +D  +DQSY L     +QL    FPLGD +K 
Sbjct: 120 DAVATGHYARLK-----DGE----LRRAIDDNKDQSYVLGVLNDEQLAHCLFPLGDTRKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL  A K DS DICF+  G     +          GD+   +G ++G H+G
Sbjct: 171 DIRKEAEAAGLVTASKPDSHDICFIPDGNTKAFLGNHIG--VRSGDLKDQDGNVIGHHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           I  +TIGQR+GLG+      G+P +V  +D ++  V VG R+ L V R+Y   +      
Sbjct: 229 IYGFTIGQRKGLGLPGPAPDGKPRYVTDIDADTGTVTVGTRDDLRVGRLYADRL-----I 283

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             ++      +C V++R+    V   V  +D    +D      GVA GQA V Y  D + 
Sbjct: 284 RLDEHEGSTQECQVQVRAHGGVVDATVTIDDGVATIDLHSPLTGVARGQAAVIYRPDPDG 343

Query: 375 ARVLGGGIISGS 386
             VLG G I  +
Sbjct: 344 DIVLGSGTICDT 355


>gi|313807611|gb|EFS46098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL087PA2]
 gi|313818648|gb|EFS56362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL046PA2]
 gi|313820418|gb|EFS58132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL036PA1]
 gi|313822776|gb|EFS60490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL036PA2]
 gi|313825290|gb|EFS63004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL063PA1]
 gi|314925110|gb|EFS88941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL036PA3]
 gi|314960438|gb|EFT04540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL002PA2]
 gi|314978611|gb|EFT22705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL072PA2]
 gi|314988029|gb|EFT32120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA2]
 gi|314989840|gb|EFT33931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL005PA3]
 gi|315084219|gb|EFT56195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL027PA2]
 gi|315085563|gb|EFT57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL002PA3]
 gi|315088383|gb|EFT60359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL072PA1]
 gi|327443626|gb|EGE90280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL013PA2]
 gi|328753381|gb|EGF66997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL020PA1]
          Length = 360

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +VR  A 
Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAT 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG  ++TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W          V
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           + +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G  
Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGVKAEQA 359


>gi|220917573|ref|YP_002492877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955427|gb|ACL65811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 351

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/366 (41%), Positives = 198/366 (54%), Gaps = 17/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSS  AALL   G++VIGVT+++ +      R  SCCA  DV DAR   
Sbjct: 1   MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSD-VARGRSCCAPDDVEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  YV + E RFR  VI  F   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGA-K 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      ++   RR +    D  +DQSYFL+   Q  L D+ FP+G + K  V
Sbjct: 119 LATGHYARV-----EERGGRRALLTAADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +ADK DSQ+ICFV +G   D V          G+IV   G++LGRH+G+ 
Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDFVALRAPARIRAGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV LD  ++RV+VG  E     R  +RE +W+         
Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAATARVVVGSAEEASRDRFEVREASWVSGA----PP 289

Query: 321 VDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               +  VK+R   +     V+      G  V   +   GVA GQA VFY  D     V+
Sbjct: 290 AGPVELRVKVRHRHEGERGTVRAVSGGAGADVRLARPVRGVAPGQAAVFYAGD----EVV 345

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 346 GGGRIA 351


>gi|256824827|ref|YP_003148787.1| tRNA-specific 2-thiouridylase MnmA [Kytococcus sedentarius DSM
           20547]
 gi|256688220|gb|ACV06022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
          Length = 416

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 143/410 (34%), Positives = 197/410 (48%), Gaps = 45/410 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQD 72
           L  + + +RVV AMSGGVDS+V AA +   G++V GV L L  S +  +     CC  +D
Sbjct: 8   LPTDGRRLRVVAAMSGGVDSAVAAARMIDAGHEVTGVHLALSQSAETLRESARGCCTLED 67

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARRV D + +  YV+D  ERFR  VI  F + Y AG TP PC+ CN ++KF+ LL  
Sbjct: 68  AGDARRVADALGIPFYVWDMAERFRRDVIEDFVAEYEAGRTPNPCLRCNESIKFAALLDK 127

Query: 133 TRQLGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              LG D +ATGHY +         +G  RR + R +D  +DQSY L      QL    F
Sbjct: 128 AVALGFDAVATGHYAQVVEVPDPAAEGGVRRELHRAVDAAKDQSYVLGVLDADQLARAHF 187

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PLGD  K  +R+ A   G  +A K DS DICF+  G     +          G+IV   G
Sbjct: 188 PLGDTTKPQIREEAARRGFSVARKPDSHDICFIADGDTRAYLAERLGE--QPGNIVDPAG 245

Query: 251 QILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           ++LG H G   YT+GQR+GLG+    + G P +V+  D  +++V+VGP+E L V  I   
Sbjct: 246 RVLGTHGGAHGYTVGQRKGLGLRVPASDGAPRYVLRTDPATNQVVVGPKEMLGVDVIRAD 305

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--------------------- 345
            + W G      A     +   +IR+     P  V  +                      
Sbjct: 306 HVRWCG-----PAPEGETRLGAQIRAHGAEYPARVVVSGADASGSLLSGPGRSEPGDGEI 360

Query: 346 ------DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
                  GV V  ++   GVA GQ+ V Y       RV+G   I+ + RS
Sbjct: 361 AATAGHQGVTVFLDELVRGVAPGQSVVLYDG----TRVVGSATITATDRS 406


>gi|226226536|ref|YP_002760642.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27]
 gi|226089727|dbj|BAH38172.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27]
          Length = 381

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/393 (37%), Positives = 208/393 (52%), Gaps = 24/393 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            PK  RV+VAMSGGVDSSV AA+L   G DV+GVT++L+        +  CC+     DA
Sbjct: 5   PPKGARVLVAMSGGVDSSVAAAILMEHGCDVVGVTMKLHGDGADVPDRP-CCSLDATSDA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RRVC+ + + HYV +  + F + V+  F   YA G TP+PCV CN   KF DLL     +
Sbjct: 64  RRVCEKLGIPHYVTNLVDHFSHDVLDDFVQEYARGRTPIPCVRCNTFTKFRDLLHKADAI 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LATGHY R     G     + +M R +D  +DQSYFL+   +  L  L  P+G   
Sbjct: 124 DAPWLATGHYARIGHRHG-----QAVMVRGLDTSKDQSYFLWGIDRPVLDRLVLPIGAQT 178

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA---LEGDIVHLNGQIL 253
           K   RD+AR  GL  A+K +SQDICFV  G +  V+       A     G +   +G+I+
Sbjct: 179 KAETRDIARRFGLRTAEKIESQDICFVPDGDHVRVIAEHLGADAPALQPGPLRLASGEII 238

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   +TIGQR+GL     EP+FVV +  +   V+VGPRE+L    +  RE+NWL  
Sbjct: 239 GEHQGFARFTIGQRKGLPGGFAEPMFVVEIVPSERAVVVGPREALLGRGVEARELNWLA- 297

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +A   G +  V++R+   P P   V+ +  G+ +  +++   ++ GQ+ V +  D 
Sbjct: 298 ----EAPPVGAQVQVQVRNRARPSPATIVRVDPQGIELALDEAVQAISPGQSLVVFDGDV 353

Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEFP 405
               VLGGGII    R+     +   V G   P
Sbjct: 354 ----VLGGGIIERGMRA-----APDRVPGKRLP 377


>gi|226356219|ref|YP_002785959.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus deserti VCD115]
 gi|226318209|gb|ACO46205.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus deserti VCD115]
          Length = 391

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 204/397 (51%), Gaps = 19/397 (4%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           ++  T  ++      P+  RV+ AMSGGVDSSV AALLK  GY V+G  ++ +   K   
Sbjct: 1   MTTVTPTSARTHSPAPQGERVLCAMSGGVDSSVTAALLKDQGYQVVGAMMRFWPDDKRVD 60

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
              +CC+    Y+ARRV + + V  Y+ DY E+F+  ++ PF   YA G TP PCV+CN 
Sbjct: 61  TFDTCCSPDAAYEARRVAEQVGVPFYLLDYREQFQRHIVGPFLDEYARGRTPNPCVNCNT 120

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            VKF +L+   + LG   +ATGHY++      ++        R  D  +DQ+YFL+ T +
Sbjct: 121 KVKFDELVKKAKMLGCRYVATGHYVKRV----ENAAGEVEFWRGDDPRKDQTYFLWGTPR 176

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
             L  + FP+G+++K  VR +A E GL  A K +SQ+ICFV  GK  D V          
Sbjct: 177 DALPYILFPVGELEKPQVRQIAEERGLLTARKPESQNICFVP-GKVQDFVAEHLPQAT-- 233

Query: 243 GDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEV 300
           G I  + +G+++G H G   YT+GQ++GLG+        VV+LD  ++ V VG  E    
Sbjct: 234 GFIREIASGEVVGEHLGTQFYTLGQKKGLGLYQSHRIRHVVHLDPATNTVWVGDYEDCMW 293

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359
             +     N+L D    D   D     V++R    PV    V  ++ G  ++F + +  V
Sbjct: 294 TGLRASSANYLLD--LRDLPQD---LEVQVRYRTAPVKARVVHADEHGFKLEFAEPQFAV 348

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           A GQ+ V Y       R+LGGG+I    R     +  
Sbjct: 349 APGQSAVLYAG----PRLLGGGLIEDHSRDLPALQPA 381


>gi|32474336|ref|NP_867330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopirellula baltica SH 1]
 gi|81657396|sp|Q7TTZ4|MNMA_RHOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|32444874|emb|CAD74876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopirellula baltica SH 1]
          Length = 399

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 142/398 (35%), Positives = 204/398 (51%), Gaps = 46/398 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-----------YNSRKAS--------- 61
           RVV+AMSGGVDSSV A LL RDG++VIGV ++             +  + +         
Sbjct: 3   RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNTNPLNLPVLG 62

Query: 62  --------KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
                     K  CC+  D  DARRV  ++ +  Y  D +E FR  ++  F   Y A  T
Sbjct: 63  DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P PCV CN  +KF  L      + A+ +ATGHY R     G     R  + R +D  +DQ
Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYARMVHSNG-----RSELHRGLDGHKDQ 176

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           SY LF     +L  +  P+GD  K  +R++A  +GL ++DK DSQ+ICFV QG + D VK
Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236

Query: 234 RINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
                +  A  G+IV   G+++G H G   +TIGQR+ LGVAMGEP FV+ ++ ++ RV+
Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296

Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGV 348
           +G  E L    +   + NW    +  + + D     ++IR +  P P  V  +      +
Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V F+  +  VA GQA V Y  +    RVLGGG I+ +
Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWITHA 387


>gi|220906770|ref|YP_002482081.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7425]
 gi|219863381|gb|ACL43720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7425]
          Length = 368

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/385 (36%), Positives = 215/385 (55%), Gaps = 28/385 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           + +   ++  ++  VVV +SGGVDSSV AA L   GY V+G+TL L       K KG CC
Sbjct: 1   MQNSGQNQTEQNKSVVVGLSGGVDSSVAAASLHHQGYRVVGLTLWLM------KGKGQCC 54

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + + + DA ++C+ + V H++ D  E F++ ++    + Y+ G TPLPC  CNRTVKF  
Sbjct: 55  S-EGLVDAAQLCEELGVPHHIVDSRELFQSQIVDYLVAGYSDGITPLPCSQCNRTVKFGP 113

Query: 129 LLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +L   + +LG + +ATGHY R  +   D    R  + R +D  +DQSYFL+  TQ  L  
Sbjct: 114 MLHYAQTELGIETIATGHYARITV---DPQTGRYQLRRAVDRSKDQSYFLYDLTQAHLAH 170

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIV 246
             FPLG+  K + R +A +  L  A+K +SQD+C ++  G     + +      ++G+IV
Sbjct: 171 TLFPLGEQTKATTRQIAAQFNLHTAEKPESQDLCLIETHGSMQAFLDKYI--NPIQGEIV 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
              G++LG H GI +YTIGQR+GLG+A  +PL+V+ LD+  +RVIVG RE        ++
Sbjct: 229 DRQGRVLGYHQGIHHYTIGQRKGLGIAAAQPLYVIGLDRAMNRVIVGDREEAVQSECTVQ 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVA 360
            +NW+     +  +       V+IR    PVPV V      +   + V + F++ + G+ 
Sbjct: 289 RVNWVSIAPPDAPIA----AEVQIRYRSSPVPVTVVPLPEEEGRSNRVKLIFDQPQFGIT 344

Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385
            GQA V+Y  D     +LGGGI+  
Sbjct: 345 PGQAAVWYQGDV----LLGGGILER 365


>gi|58616948|ref|YP_196147.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Gardel]
 gi|75432674|sp|Q5FFJ0|MNMA_EHRRG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58416560|emb|CAI27673.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Gardel]
          Length = 370

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/377 (44%), Positives = 234/377 (62%), Gaps = 14/377 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K P     VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ K S  KG+C
Sbjct: 6   KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNKNSNTKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V  ++   HY  +YE+ FR  VI  F  +Y  G+TP+PC+ CN+ +KF 
Sbjct: 66  CGSLDTKDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ LGADVL TGHYIR      D       +    D ++DQSYFLFATT +QL  
Sbjct: 126 DLLNATKSLGADVLVTGHYIRKIEQDDD-----IYVYSSKDTKKDQSYFLFATTVEQLRL 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  KE +R LA+   L +A+K DSQ+ICFV    Y   +  +      +G+I+ 
Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTDT-YKKTIAELRPHTIKKGNIID 239

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +NG IL +HNGI+N+TIGQR+G+G++   PL+V+ L+ +++ V VGP+ +L  +++Y+RE
Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           INWL     E    +G    VK+RSS    P  +   N++   +  + S   V  GQACV
Sbjct: 300 INWLA---KEKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D    R+LGGG I
Sbjct: 357 IYDHD----RMLGGGWI 369


>gi|258646059|ref|ZP_05733528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister invisus DSM 15470]
 gi|260403430|gb|EEW96977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister invisus DSM 15470]
          Length = 350

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 27/368 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VVVAMSGGVDS++ A LL+  GYDV G T+  ++             GQD+ +A++
Sbjct: 3   EKKKVVVAMSGGVDSTLTARLLQEAGYDVYGATMNQFD-------------GQDMTEAQK 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           + D + + H V D  + +++ V+  F  SY  G TP PC+ C+  +KF       R    
Sbjct: 50  IADFLGIPHKVIDVRKMYQDIVLSYFVDSYKNGITPNPCMMCDFKIKFGFFYDTVRAFFD 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
               ATGHY R      D  +R+  + +  DL +DQSY ++  TQ QL  + FPLG + K
Sbjct: 110 CPYFATGHYARITY---DGTRRKYQVEKATDLAKDQSYMMYHLTQDQLAHILFPLGRIYK 166

Query: 198 ESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  R ++ E GL   +K++SQDICF+  +  Y + ++         G+I    G+ILG H
Sbjct: 167 KDTRRISEEKGLPTYNKAESQDICFLTSEKSYAEFLQNHAPEAFRPGNITDTKGRILGTH 226

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G+  YTIGQR+GLG+A   PL+VV L    +RVIVG  + L    +   E+++      
Sbjct: 227 KGLPFYTIGQRKGLGIASRTPLYVVSLHAGKNRVIVGSNDDLFRSGLLANELDFTDGA-- 284

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
                  F+C  KIR         V  ++ G   V F++ +  +  GQ+ VFY     E 
Sbjct: 285 --PPSQQFRCRAKIRYGIHVHNCTVTLDNHGRAAVKFDEPQRAITPGQSVVFY----EEN 338

Query: 376 RVLGGGII 383
           R+LGGG I
Sbjct: 339 RLLGGGTI 346


>gi|148557644|ref|YP_001265226.1| tRNA-specific 2-thiouridylase MnmA [Sphingomonas wittichii RW1]
 gi|148502834|gb|ABQ71088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas wittichii RW1]
          Length = 463

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 194/370 (52%), Positives = 244/370 (65%), Gaps = 20/370 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVAMSGGVDSSVVAAL    G + IGVTLQLY+   A  R GSCCAGQD+ DAR V D
Sbjct: 108 RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 167

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++HYVFDYE RFR++VI  FA  YAAG TP+PCV CN+ VKF+DL  + R LGAD L
Sbjct: 168 RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 227

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R  +  G     R  + R  D  RDQSYFLFATT+ QL  LRFPLG M K  VR
Sbjct: 228 ATGHYVRRVVGAG----GRAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 283

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL +A K DSQDICFV  G Y  +VKR+    A EG+IV L+G++LGRH G+I+
Sbjct: 284 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 343

Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +T+GQRRG+ +    EPL+VV L+  + R++VGPR +L V    L ++NW+G+G      
Sbjct: 344 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEGYEGP-- 401

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   K+RS   PVP    R +DG  V F++ E GVA GQA V Y  D    RVLGG
Sbjct: 402 -----LTAKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 448

Query: 381 GIISGSKRSD 390
           G I  +  ++
Sbjct: 449 GWIRATVPAE 458


>gi|315092805|gb|EFT64781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL060PA1]
          Length = 360

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +VR  A 
Sbjct: 121 YARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNVRQEAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +   +   + +G+I   +G ++G HNG  ++TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGYHHFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W          V
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCSGE-----PV 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           + +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G  
Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGVKAEQA 359


>gi|327331848|gb|EGE73585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL096PA3]
          Length = 360

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATGH
Sbjct: 61  PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +VR  A 
Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAT 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +   +   + +G+I   +G ++G HNG  ++TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGYHHFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W          V
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           + +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G  
Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGVKAEQA 359


>gi|311740584|ref|ZP_07714411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304104|gb|EFQ80180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 365

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 148/375 (39%), Positives = 199/375 (53%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G++VIGV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 5   MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+  VI  F  SYA GETP PC+ CN  +KF  LL     LG D
Sbjct: 65  CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      +  DG     M R +D ++DQSY L   + ++L    FP+GD  K  
Sbjct: 125 AVATGHYAT----IDKDG----YMRRSLDEKKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A   G   A K DS DICF+  G     +          G IV   G  L  H+G 
Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDGNTQAFLGARIGL--RPGMIVDQEGTELKEHDGA 234

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            NYTIGQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G+
Sbjct: 235 WNYTIGQRKGLDIKAPAADGRPRYVTDIDAVTGTVTVGAREDLAVTSIQADRLKYLHPGM 294

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371
             D     F+C V++R+    VP    V R  D + ++ ++S  GVA GQA V Y  + D
Sbjct: 295 DGD-----FECEVQVRAHGSVVPCTAHVDREADEMRLELKESLSGVARGQAAVLYLPSPD 349

Query: 372 SNEARVLGGGIISGS 386
                V+G G I G+
Sbjct: 350 ELGDIVIGSGTICGT 364


>gi|293364049|ref|ZP_06610785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma alligatoris A21JP2]
 gi|292552539|gb|EFF41313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma alligatoris A21JP2]
          Length = 372

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 177/379 (46%), Gaps = 35/379 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             RVV+ MSGGVDSSV A LLK  GY+V+G+ ++ ++S   +   G+       C   QD
Sbjct: 3   KKRVVIGMSGGVDSSVAAYLLKEQGYEVVGLFMRNWDSLLNNDILGNEKITQDICPQEQD 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA  VC  + +  +  D+ + +   V   F   Y    TP P + CN+ +KF+     
Sbjct: 63  YQDALSVCQKLQIPLHRVDFVKEYWQNVFNNFIEEYKKARTPNPDILCNKYIKFNAFAKH 122

Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              +L AD +A GHY         DG+    + +  D  +DQ+YFL   + +QL ++  P
Sbjct: 123 AFNELKADYIAMGHYANVV-----DGR----LYKAKDENKDQTYFLAQLSHEQLKNVIMP 173

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           L +++K  +R +A E+ L  A K DS  ICF+ +  +   ++      A EGD+V+ +  
Sbjct: 174 LANLEKTQIRKIALELNLATAKKKDSTGICFIGERNFTKFLQNYIP--AHEGDVVNIITK 231

Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLR 306
           Q + +H G   YTIGQR+GL +    EP +V   D   + + V P    E L+ + +   
Sbjct: 232 QKIAKHIGCFYYTIGQRKGLNLGGNSEPHYVCGHDVLKNILYVAPASSPEFLDSNSLIAS 291

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
            +        ++ +       VK R  Q  +   V+  +D  V + +      V  GQ  
Sbjct: 292 NLTLNHQNFNKENI------TVKFRYRQQEIKAIVEFLEDKKVKIIYNSKSQAVTPGQQV 345

Query: 366 VFYTSDSNEARVLGGGIIS 384
           V Y       + LGG II 
Sbjct: 346 VLYEG----QKCLGGAIIE 360


>gi|91203955|emb|CAJ71608.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 336

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/348 (34%), Positives = 182/348 (52%), Gaps = 16/348 (4%)

Query: 40  LKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98
           +   GY+V+G+ ++L      A  +   CC+ +D  DAR V + + +  +V +++E F +
Sbjct: 1   MVEQGYEVVGLFMRLGLEKLDAMTKTKVCCSLEDANDARTVAEQLGIQFHVLNFKEAF-D 59

Query: 99  AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158
            +I  F + Y  G TP PC+ CN+ +KF  LL+  + L AD +ATGHY +   +      
Sbjct: 60  HIIDHFCTEYLNGRTPNPCIMCNQELKFGKLLNFAKMLNADFVATGHYAKVEKHND---- 115

Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
            R ++ +  DL ++QSY LF+  Q+QL    FPLG + KESVR +A+++ L   DK +SQ
Sbjct: 116 -RFLLKKGDDLNKEQSYVLFSLNQEQLSKTLFPLGTLTKESVRRIAKDLNLKTKDKPESQ 174

Query: 219 DICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPL 278
           DICFV    Y  ++        + G I    G ILG H G   +TIGQR+GLGVA G P 
Sbjct: 175 DICFVLDNNYHSLLYERYGNHIIPGPIKDRQGNILGEHQGAPFFTIGQRKGLGVAFGSPR 234

Query: 279 FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338
           +VV ++   + VI+G  + LE   +    +NW+     E       +   KIR    P  
Sbjct: 235 YVVDINPRENAVIIGTDKDLEETGLIASSLNWISVQQLELP----MEVQAKIRYHHMPAH 290

Query: 339 VFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             V     D V V F + +  +  GQA VFY +D+    V+GGG I  
Sbjct: 291 ATVSPFGTDKVRVHFNEPQKAITPGQAVVFYDNDT----VVGGGWIDR 334


>gi|306835899|ref|ZP_07468893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49726]
 gi|304568224|gb|EFM43795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49726]
          Length = 361

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 146/375 (38%), Positives = 196/375 (52%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G+DV+GV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 1   MRVLVAMSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+  VI  F  SY+ GETP PC+ CN  +KF  LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      + DDG     M R  D  +DQSY L   + ++L    FP+GD  K  
Sbjct: 121 AVATGHYAT----LDDDG----YMRRSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A   G   A K DS DICF+  G     +          G IV   G  L  H+G 
Sbjct: 173 IREEAAAHGFSTAKKPDSYDICFIPDGNTQQFLGSRIGL--RPGMIVDQEGTELKEHDGA 230

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            NYTIGQR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G+
Sbjct: 231 WNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPGM 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371
             D     F+C V++R+    VP    V R  D + ++ ++   GVA GQA V Y  + D
Sbjct: 291 DGD-----FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSPD 345

Query: 372 SNEARVLGGGIISGS 386
                V+G G I  +
Sbjct: 346 DLGDIVIGSGTICET 360


>gi|257094501|ref|YP_003168142.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047025|gb|ACV36213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 366

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 180/383 (46%), Gaps = 34/383 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K   VVV +SGGVDSSV A LLK  G+ V+G+ ++ +      +    C + QD+ D  
Sbjct: 2   NKGKTVVVGLSGGVDSSVAALLLKEQGWHVVGLFMKNWEDDDTDE---YCSSRQDLVDVL 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D I +   V ++  ++R  V   F + YAAG TP P V CN  +KFS  L    ++G
Sbjct: 59  SVADRIGIDVEVVNFASQYRERVFAHFLAEYAAGRTPNPDVLCNSEIKFSAFLEHALKIG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY   R + G        + +  D  +DQSYFL    QQQL    FPL  + K
Sbjct: 119 AERIATGHYAGVREFQGA-----WQLLKAEDGTKDQSYFLHRLNQQQLAKTLFPLAGLYK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256
             VR +A   GL +A K DS  ICF+ +  + + + R       +G+I  L + ++LG H
Sbjct: 174 REVRKMAAAAGLHLALKKDSTGICFIGERPFKEFLLRYLP--PKKGEIRGLDDDRLLGEH 231

Query: 257 NGIINYTIGQRRGLGVAM-----------GEPLFVVYLDKNSSRVIVGP---RESLEVHR 302
           +G+  +TIGQR+GL +              +  FV   D  ++ + V       +L   +
Sbjct: 232 DGVAYHTIGQRKGLHIGGVKGGKSGDSGDHDAWFVARKDIATNVLYVVQGHAHPALLADQ 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVAS 361
           +   +++W+      +     +    K R  Q      V+  D     + F + +  V  
Sbjct: 292 LTAGDLSWVAG----EPPHTHWVYTAKTRYRQADAACEVEHVDAHSCLISFAEPQWAVTP 347

Query: 362 GQACVFYTSDSNEARVLGGGIIS 384
           GQ+ V Y         LGGG+I+
Sbjct: 348 GQSVVVY----ESRVCLGGGVIA 366


>gi|253683532|ref|NP_001156660.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
 gi|296486862|gb|DAA28975.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
          Length = 417

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 183/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADRDCEDAYRVCR 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++      Y + + N V   F + Y  G TP P + CN+ +KF    +     LGAD 
Sbjct: 63  ILDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFRCFFNYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL    Q
Sbjct: 123 VATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVPQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           + L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +  + + +         
Sbjct: 183 EALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V+V P     +
Sbjct: 241 PGRFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPRTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   K+
Sbjct: 300 LYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A GQ  VFY  D      LG G I
Sbjct: 360 VRALAPGQFAVFYKGD----ECLGSGKI 383


>gi|189347539|ref|YP_001944068.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium limicola DSM 245]
 gi|189341686|gb|ACD91089.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium limicola DSM 245]
          Length = 358

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCD 81
           VV  +SGGVDS+V A LL R GY V G+ +++ ++       + S     D  D +    
Sbjct: 7   VVTGISGGVDSAVAACLLHRQGYRVTGINIRILDTPVDNPSLQPSRLVISDHPDFQ---- 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +  +  +   +F +AVI  F   Y +G TP PC+ CN+T+K+  LL   R L A+++
Sbjct: 63  ---IPVFSLNLSAKFFDAVIRYFRDDYLSGRTPNPCMVCNKTIKWYGLLEAARMLEAEMI 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+    G     R  + +  D E+DQSYFL+  +Q  L     PLG + K  VR
Sbjct: 120 ATGHYARTSFSDG-----RYRLMKGCDPEKDQSYFLWMLSQADLSKTLLPLGALTKPEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258
           +LAR  G+  A+K +SQ+ICFV    Y   +K    G+  E   G+IV  +G +LG H G
Sbjct: 175 ELARTFGVRAAEKKESQEICFVPNDDYCSYLKNSIPGLEQEVAGGEIVDADGNVLGHHRG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+   +PL+V  LD   +R+ VG +  LE   +    +NW+G     +
Sbjct: 235 YPFYTIGQRRGLGIPAPKPLYVTGLDARHNRIRVGGKADLECRALTASGLNWIGI----E 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A    F+   +IR      P  V+    +   V FE  + GV  GQA VFY SD     V
Sbjct: 291 APSSPFETAARIRYRDKESPCTVEPIGGNKATVTFETPKHGVTPGQAVVFYRSD----EV 346

Query: 378 LGGGIISGSKRS 389
           LGGG I  + + 
Sbjct: 347 LGGGFIDQTHQP 358


>gi|327543019|gb|EGF29466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopirellula baltica WH47]
          Length = 399

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 204/398 (51%), Gaps = 46/398 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL---------YNSRKAS----------- 61
           RVV+AMSGGVDSSV A LL RDG++VIGV ++           +S +             
Sbjct: 3   RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNANPLNLPVLG 62

Query: 62  --------KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
                     K  CC+  D  DARRV  ++ +  Y  D +E FR  ++  F   Y A  T
Sbjct: 63  DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P PCV CN  +KF  L      + A+ +ATGHY R     G     R  + R +D  +DQ
Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYARMVHSNG-----RSELHRGLDGHKDQ 176

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           SY LF     +L  +  P+GD  K  +R++A  +GL ++DK DSQ+ICFV QG + D VK
Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236

Query: 234 RINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
                +  A  G+IV   G+++G H G   +TIGQR+ LGVAMGEP FV+ ++ ++ RV+
Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296

Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGV 348
           +G  E L    +   + NW    +  + + D     ++IR +  P P  V  +      +
Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            V F+  +  VA GQA V Y  +    RVLGGG I+ +
Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWITHA 387


>gi|296114840|ref|ZP_06833488.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978546|gb|EFG85276.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 358

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/378 (47%), Positives = 244/378 (64%), Gaps = 25/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV 
Sbjct: 1   MRILVAMSGGVDSSVVAARLVEEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++HYV D E RFR++VI  FA +YA GETP+PCV CN+ VKF+DLL + R LG D 
Sbjct: 60  DRLGIAHYVIDAERRFRDSVIETFADAYAEGETPVPCVACNQGVKFTDLLGMARDLGVDA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R       +G +   + RP+D  RDQS+FLFATT QQL  LRFPLGDM  K++
Sbjct: 120 MATGHYVRRI-----EGPQGVELHRPVDAGRDQSWFLFATTLQQLGFLRFPLGDMPDKDA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CF+  G Y  +V+++    +  G+IV L+G ++G H G+
Sbjct: 175 VRAEAERFGLAVAGKPDSQDLCFIPDGSYARLVEKLRPQTSGAGEIVDLSGNVVGTHEGV 234

Query: 260 INYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             YT+GQ R LG A    GE   VV ++    RV++GPR       + LR +NWL     
Sbjct: 235 ARYTVGQSRRLGDATMQGGERQMVVGIEPGRRRVVIGPRTQGVTRELRLRNMNWLV---- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSDSNEA 375
            +    G +C V+IR+ +   P  V+R +DG  V  +++   V A GQACV Y       
Sbjct: 291 -EPPAQGLRCSVQIRAREAVRPATVRRTEDGASVLLDEA--AVPAPGQACVMYDG----T 343

Query: 376 RVLGGGIISGSKRSDAVE 393
           RVLGGG I   +R D+  
Sbjct: 344 RVLGGGFI---RRHDSAA 358


>gi|162148152|ref|YP_001602613.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|205816818|sp|A9HMI3|MNMA_GLUDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161786729|emb|CAP56312.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 361

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 186/377 (49%), Positives = 246/377 (65%), Gaps = 20/377 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV 
Sbjct: 1   MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D E RFR +VI  FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ 
Sbjct: 60  DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGIARDLGAEA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G DG     + RP+D  RDQS+FLFATT+QQL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRQQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y  VV+ +   +A EG+IV  +G+++GRH+G+
Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             +T+GQ R LG A    G    VV +D  S RV++GPR    V  + LR++NWL     
Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWL----- 289

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D      +C V+IR+ +   P  V+R  DG  V  +++ +  A GQACV Y      +R
Sbjct: 290 IDPPEGDLRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLYDG----SR 344

Query: 377 VLGGGIISGSKRSDAVE 393
           VLGGG I   + + A  
Sbjct: 345 VLGGGFIRRREMAGAAA 361


>gi|330993151|ref|ZP_08317089.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1]
 gi|329759921|gb|EGG76427.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1]
          Length = 376

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 184/389 (47%), Positives = 250/389 (64%), Gaps = 25/389 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K  + MR++VAMSGGVDSSVVAA L  +G++VIG TLQLY+SR+++ +KG+CCAG+D+
Sbjct: 4   IGKWNQAMRILVAMSGGVDSSVVAARLVDEGHEVIGATLQLYDSREST-KKGACCAGRDI 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +DARRV D + + HYV D E RF ++VI  FA +YAAGETP+PCV CN+ VKF+DLL + 
Sbjct: 63  HDARRVADRLGIPHYVIDAERRFHDSVIGTFADAYAAGETPVPCVACNQGVKFTDLLGMA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+LG D +ATGHY+R     G DG     M RP+D  RDQS+FLFATT+ QL  LRFPLG
Sbjct: 123 RELGVDAMATGHYVRR--VEGPDGPE---MHRPVDAGRDQSWFLFATTRDQLDFLRFPLG 177

Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           DM  K +VR  A   GL +A K DSQD+CFV  G Y  +V+++   +   G+IV  +GQ+
Sbjct: 178 DMPDKAAVRAEAERFGLAVAAKPDSQDLCFVTDGSYAGLVEKLRPDVTGAGEIVDQSGQV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +GRH G+  YT+GQ R LG A    G    VV +   S RV++GPR       + LR++N
Sbjct: 238 VGRHEGVTRYTVGQSRRLGNAAMRDGARQMVVGIQPASRRVVIGPRAQAVTRTLMLRDMN 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGV-ASGQACVF 367
           WL          DG +C V+IR+ +   P  + +  + G  V+ ++    V A GQACV 
Sbjct: 298 WL----VSPPGPDGLRCAVQIRAREAARPATIWQAGNGGARVELDEG--AVPAPGQACVL 351

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y      +RVLGGG I   +R D+ E+ +
Sbjct: 352 YDG----SRVLGGGFI---RRPDSEEKGV 373


>gi|121998186|ref|YP_001002973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
 gi|166234856|sp|A1WWV9|MNMA_HALHL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|121589591|gb|ABM62171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
          Length = 383

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/401 (30%), Positives = 184/401 (45%), Gaps = 31/401 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  R+VV +SGGVDS+V A  L R G++VIG+ ++ +           C A  D+
Sbjct: 1   MTESPK--RIVVGLSGGVDSAVAALRLVRAGHEVIGLFMKNWEDDD---TLTQCSAEDDI 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  V + + +     ++   +R  V         AG TP P + CNR VKF   L   
Sbjct: 56  AAAVAVAEHLGIPIRRVNFAAHYRREVFEHALQELRAGRTPNPDILCNRHVKFDRFLRHA 115

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R+   AD +ATGHY R+    G  G     + R +D  +DQSYFL    +Q L  +RFPL
Sbjct: 116 REQFEADAVATGHYART----GRAGDGEPALLRGIDPSKDQSYFLAGVPRQALDAVRFPL 171

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           GD  KE+VR  AR   L   D+ DS  ICF+ +  +   ++R        G I+  +G+ 
Sbjct: 172 GDSTKETVRAEARSAALPNFDRPDSTGICFIGERDFTQFMQRYID--PHPGPILTEDGRE 229

Query: 253 LGRHNGIINYTIGQRRGLGVAMGE------PLFVVYLDKNSSRVIVGP---RESLEVHRI 303
           +GRH G+  YT+GQRRGLG+          P +V   D   + + V        L+   +
Sbjct: 230 IGRHCGLAFYTLGQRRGLGIGGDRNRDSSAPWYVAGKDARRNALFVVQGHDHPWLQSAAV 289

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
                +WL          +G +   ++R  Q+P    +   + G V   F++ +     G
Sbjct: 290 STEPFHWLAPV-----PAEGARLHAQVRYRQEPQAGQLSHAEGGRVVFRFDEPQRAATPG 344

Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403
           Q  V Y  +    + LGGG+I  +  +D      L     E
Sbjct: 345 QHLVLYDRE----QCLGGGVIDTAHPADRSAPPALQTQSTE 381


>gi|14195297|sp|Q9RTK1|MNMA_DEIRA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 380

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 203/377 (53%), Gaps = 19/377 (5%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  +  RV+ AMSGGVDSSV A+LLK  GY VIG  ++ +   K +    SCC+    Y
Sbjct: 14  SRAAQGERVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAY 73

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +ARRV + + V  Y+ DY E F+  ++ PF   YA G TP PCV+CN  VKF +L+   +
Sbjct: 74  EARRVAEQVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAK 133

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LG   +ATGHY++      D+ +      R  D  +DQ+YFL+ T +  L  + FP+G+
Sbjct: 134 MLGCRYVATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGE 189

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           ++K  VR++A E GL  A K +SQ+ICFV  GK  D V         +G I  +  G+++
Sbjct: 190 LEKPQVREIAAERGLLTAQKPESQNICFVP-GKVQDFVAEHLPQA--QGYIREIATGEVV 246

Query: 254 GRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           G H G   YT+GQ++GLG+        VV+LD +S+ V VG  +      +   + N+L 
Sbjct: 247 GEHLGTQFYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYL- 305

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                D      +  V++R    PV   V   + +G  ++F + +  VA GQ+ V Y   
Sbjct: 306 ----LDLAELPTELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG- 360

Query: 372 SNEARVLGGGIISGSKR 388
              +R+LGGG+I+   R
Sbjct: 361 ---SRLLGGGLIADHAR 374


>gi|205829107|sp|A5VFM2|MNMA_SPHWW RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 378

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 194/370 (52%), Positives = 244/370 (65%), Gaps = 20/370 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVAMSGGVDSSVVAAL    G + IGVTLQLY+   A  R GSCCAGQD+ DAR V D
Sbjct: 23  RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 82

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++HYVFDYE RFR++VI  FA  YAAG TP+PCV CN+ VKF+DL  + R LGAD L
Sbjct: 83  RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 142

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R  +  G     R  + R  D  RDQSYFLFATT+ QL  LRFPLG M K  VR
Sbjct: 143 ATGHYVRRVVGAG----GRAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 198

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A E+GL +A K DSQDICFV  G Y  +VKR+    A EG+IV L+G++LGRH G+I+
Sbjct: 199 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 258

Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +T+GQRRG+ +    EPL+VV L+  + R++VGPR +L V    L ++NW+G+G      
Sbjct: 259 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEGYEGP-- 316

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                   K+RS   PVP    R +DG  V F++ E GVA GQA V Y  D    RVLGG
Sbjct: 317 -----LTAKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 363

Query: 381 GIISGSKRSD 390
           G I  +  ++
Sbjct: 364 GWIRATVPAE 373


>gi|31542641|ref|NP_060476.2| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens]
 gi|8134740|sp|O75648|MTU1_HUMAN RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;
           AltName: Full=MTO2 homolog
 gi|4469186|emb|CAB38414.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo
           sapiens]
 gi|17149283|gb|AAL35970.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo
           sapiens]
 gi|17432490|gb|AAL38183.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo
           sapiens]
 gi|54633233|dbj|BAD66875.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens]
 gi|119593828|gb|EAW73422.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_a [Homo sapiens]
 gi|158254860|dbj|BAF83401.1| unnamed protein product [Homo sapiens]
          Length = 421

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 188/412 (45%), Gaps = 47/412 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +       
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P     +
Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   ++
Sbjct: 300 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSDAVEESL 396
              +A+GQ  VFY  D      LG G I            G +R+    ES 
Sbjct: 360 VRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAGMATESP 407


>gi|194246580|ref|YP_002004219.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma mali]
 gi|193806937|emb|CAP18369.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase
           [Candidatus Phytoplasma mali]
          Length = 385

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 175/385 (45%), Gaps = 27/385 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72
             +V++ +SGGVDSSV A LLK+ GY V  V ++ ++S      KG+       C   +D
Sbjct: 2   KKKVIIGLSGGVDSSVAALLLKQKGYLVEAVFMKNWDSGLNFDIKGNPDIKELVCPQTKD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA ++   + +  +  D+ E + N V   F  S     TP P V CN  +KF+     
Sbjct: 62  YQDALKISQQLEIKLHKVDFVEEYWNKVFKYFLDSLKKNLTPNPDVLCNNEIKFNVFTKY 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                 D +ATGHY         D   + I+ +  D  +DQSYFL    Q QL  + FPL
Sbjct: 122 VDTFKPDFIATGHYANIDY----DKNNKLILKKAFDTNKDQSYFLSQLKQHQLKKIIFPL 177

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G++ K  VR++A++ GL  A+K DS  ICF+ + ++FD +K         G +  L+G  
Sbjct: 178 GNLTKPEVREIAKKAGLINANKKDSTGICFIGERRFFDFLKNYLP--MKPGKMKKLDGTY 235

Query: 253 LGRHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305
           L  H G I YTIGQR+GLG+   +    P FVV  +   + + V        L      +
Sbjct: 236 LKEHRGTIYYTIGQRKGLGLGGCQFNQSPWFVVGKNLKKNILYVEQGSEHFYLYSDSALI 295

Query: 306 REINWLGD--GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASG 362
            ++ W G    + E   +       K R  Q    + +   N+  V V + +    V  G
Sbjct: 296 VDVVWRGTIYDIQEQIKISKKNLNAKFRYRQLDQKISITWLNNTTVKVYYPQKIKAVTPG 355

Query: 363 QACVFYTSDSNEARVLGGGIISGSK 387
           Q C FY  D      LG G+I    
Sbjct: 356 QICAFYLEDI----CLGSGMIKEVY 376


>gi|117927897|ref|YP_872448.1| tRNA-specific 2-thiouridylase MnmA [Acidothermus cellulolyticus
           11B]
 gi|166234840|sp|A0LSQ2|MNMA_ACIC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117648360|gb|ABK52462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidothermus cellulolyticus 11B]
          Length = 362

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 143/374 (38%), Positives = 196/374 (52%), Gaps = 21/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDSSV AA +   G++V+GV L L ++ ++ +     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHEVVGVHLALSSTPRSHREGARGCCSLEDARDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  ERFR  VI  F + YA G TP PC+ CN  +KF+ +L     LG D
Sbjct: 61  ADVLGIPFYVWDVAERFRQDVIEDFLAEYAQGRTPNPCLRCNERIKFAAVLDRALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R +      G +   + R  D  +DQSY L   +Q QL    FPLGD  K  
Sbjct: 121 AVCTGHYARIQR-----GPQGLELHRAADSAKDQSYVLGVLSQPQLEHALFPLGDSLKTE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +ADK DS DICF+  G   D ++      A  GDIV  +G+ LG H+G 
Sbjct: 176 VRAEAAARGLAVADKPDSHDICFIPDGDTADFLRSHLG--AAPGDIVDSSGRRLGSHDGA 233

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +T+GQRRGL +      G P +V+ +   +  V+VG  + L V  +      W G   
Sbjct: 234 YQFTVGQRRGLRLGTPAPDGRPRYVLEVSPVTRTVVVGTADELSVTGLTGVRPIWCG--- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    +C V+ R+     P  V+   D V V+F     GVA GQA VFY     + 
Sbjct: 291 --PPPDAPLECTVQYRAHGAAAPAVVELRGDEVDVEFRAPVRGVAPGQAAVFY----ADT 344

Query: 376 RVLGGGIISGSKRS 389
           RVLG   I+ ++R+
Sbjct: 345 RVLGSATIARTRRA 358


>gi|209542792|ref|YP_002275021.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530469|gb|ACI50406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 361

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/377 (49%), Positives = 246/377 (65%), Gaps = 20/377 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV 
Sbjct: 1   MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + HYV D E RFR +VI  FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ 
Sbjct: 60  DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGMARDLGAEA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R     G DG     + RP+D  RDQS+FLFATT++QL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRRQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y  VV+ +   +A EG+IV  +G+++GRH+G+
Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
             +T+GQ R LG A    G    VV +D  S RV++GPR    V  + LR++NWL     
Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWL----- 289

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D      +C V+IR+ +   P  V+R  DG  V  +++ +  A GQACV Y      +R
Sbjct: 290 IDPPEGDLRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLYDG----SR 344

Query: 377 VLGGGIISGSKRSDAVE 393
           VLGGG I   + + A  
Sbjct: 345 VLGGGFIRRREMAGAAA 361


>gi|156551968|ref|XP_001600621.1| PREDICTED: similar to ENSANGP00000015341 [Nasonia vitripennis]
          Length = 395

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 179/376 (47%), Gaps = 20/376 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V +SGGVDS+V A LLK  G+ V G+ ++ ++        G C A +D  DA+ +C
Sbjct: 3   KKVIVGISGGVDSAVAALLLKSKGFKVTGIFMRNWDI---VNELGECQAEKDYEDAKWIC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
           + + +  +  ++ + + N V      +Y  G+TP P + CN+ +KF+      R +LGAD
Sbjct: 60  NRLKIPLHDVNFVKDYWNEVFSYLLENYEVGKTPNPDIQCNKKIKFNKFFHYARTELGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRR---RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +ATGHY R+      +  +      + R  D  +DQ++FL    Q  L    FPLG+  
Sbjct: 120 AIATGHYARNSFGSFLEDYKPDTNASLLRAKDSLKDQTFFLSQIPQLSLRRTMFPLGEYL 179

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           K+ V+ +A+E  L+I A+K +S  ICF+   ++ D +          G  +    G I+G
Sbjct: 180 KKDVKKMAKEANLEILANKKESMGICFIGSRQFQDFIVEYVEE--KPGYFIDFKTGNIVG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311
           +H GI  +T+GQ   +G  +  P FV   D +++ + V       +L    +    ++W+
Sbjct: 238 KHTGIHQWTLGQGCKIG-GLPSPYFVFRKDTDNNNIYVVAGSSHPALFSEFLVASNVHWI 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            +   E      + C  + +     VP  V +   + + +   K +  +  GQ  V Y  
Sbjct: 297 NEEPLELKNRKVYDCDFRFQHRNILVPCSVFKTTSNKLLIRLYKPKRAITPGQYAVLYAG 356

Query: 371 DSNEARVLGGGIISGS 386
           +    + LG   I+ S
Sbjct: 357 E----QCLGSAEITSS 368


>gi|45658118|ref|YP_002204.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601360|gb|AAS70841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 366

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 208/376 (55%), Gaps = 13/376 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V A LL  DGY+VIGV L+ +          K SCC+ +D+ DAR V  ++ 
Sbjct: 1   MSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDVGISLK 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + LG D +ATG
Sbjct: 61  IPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGIDKIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R           R  +   +D+ ++Q+Y+L+  +Q+ L ++ FPLG+M K  VR +A
Sbjct: 121 HYARIARN-----GERYAIANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPEVRQIA 175

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
           R MGL +ADKS+SQ+ICF+ +  Y   +++ N      G     +G+I+G+H G  N+TI
Sbjct: 176 RRMGLPVADKSESQEICFIPENDYRKFLEKKN-VEFTPGFFKLKDGRIVGKHKGRENFTI 234

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQR+GLG+A   PL+V+ ++ +   VI+G           + ++N+ G     +   +  
Sbjct: 235 GQRKGLGIAWKNPLYVISIE-DDGSVILGEENETYNESFSVIDLNFQGLAPLNEG--ESL 291

Query: 325 KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +C V++R    P+   + +  +G+ V   +   GV  GQ+ VFY  DS+   +L GGIIS
Sbjct: 292 ECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLLGGIIS 349

Query: 385 GSKRSDAVEESLLSVI 400
                  V E  +SV+
Sbjct: 350 KGSIQMRVAEPAISVL 365


>gi|86157907|ref|YP_464692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123497474|sp|Q2IHX6|MNMA_ANADE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|85774418|gb|ABC81255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/366 (42%), Positives = 199/366 (54%), Gaps = 17/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSS  AALL  +G++VIGVT+++ +   A  R  SCCA  DV DAR   
Sbjct: 1   MRILVAMSGGVDSSTAAALLAGEGHEVIGVTMRVADYSDA-ARGRSCCAPDDVEDARAAA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  YV + E RFR  VI  F   Y  G TP PCV CN  VKF  LL+  R LGA  
Sbjct: 60  RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGA-K 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R           RR +    D  +DQSYFL+   Q  L D+ FP+G + K +V
Sbjct: 119 LATGHYARVEERG-----GRRRLLTAADPAKDQSYFLYGLGQDALGDVLFPVGALAKPAV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +A+K DSQ+ICFV  G   D V          G+IV   G++LGRH+G+ 
Sbjct: 174 RAEAARAGLAVAEKPDSQEICFVTLGDAGDFVALRAPARVRPGEIVSTAGEVLGRHDGVH 233

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T+GQRRGLG+A   P +VV LD  ++RV+VG  E     R  +RE  W+       AV
Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLDAAAARVVVGSAEEASRDRFEVREATWVSGAPPGGAV 293

Query: 321 VDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               +  VK+R   +     V  +    G  V   +   GVA GQA VFY  D     V+
Sbjct: 294 ----ELRVKVRHRHEGERGTVRARAGGAGAEVRLARPVRGVAPGQAAVFYDGD----EVV 345

Query: 379 GGGIIS 384
           GGG I+
Sbjct: 346 GGGRIA 351


>gi|148240074|ref|YP_001225461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7803]
 gi|205828977|sp|A5GMJ9|MNMA_SYNPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147848613|emb|CAK24164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7803]
          Length = 389

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 206/400 (51%), Gaps = 34/400 (8%)

Query: 3   VSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           V+ AT   +  LD+    P + RV V +SGGVDSS+ AALL   G++V G+TL L +   
Sbjct: 7   VTAATPAGAEALDRLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS--- 63

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               KG+CC  + + DA  +C+ + + H+V D  + F+  ++      Y AG TPLPC  
Sbjct: 64  ---GKGACC-AEGLVDAAGICEQLEIPHHVVDSRDTFQREIVNGLIEGYQAGITPLPCSR 119

Query: 120 CNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           CNR VKFS +L   ++  G   +ATGHY R R    D+   R  + R +D  +DQSYFL+
Sbjct: 120 CNRAVKFSPMLQWAQEKRGLARIATGHYARLRF---DETTGRWRLLRGLDARKDQSYFLY 176

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINA 237
             TQ+ L  + FPLG++ K   R  A   GL  A K +SQD+C     G     +     
Sbjct: 177 DLTQEVLARVVFPLGELTKPDTRLEAARHGLRTAAKPESQDLCLADHHGSMRAFLDAYLP 236

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
               +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V  R+ 
Sbjct: 237 --PRQGEIVLQDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRDQ 294

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-----------RNDD 346
                  +  INW+       A        V++R    PVP  +                
Sbjct: 295 AGRSHCVVGAINWVSMAPP--APEHSQMVQVQVRYRSAPVPARLTTMTAEASDAAAERPH 352

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
              +DF++ +  +  GQA VFY  D+    VLGGG+I  S
Sbjct: 353 RCRLDFDEPQFSITPGQAAVFYDGDA----VLGGGLIQTS 388


>gi|32490853|ref|NP_871107.1| hypothetical protein WGLp104 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173418|sp|Q8D397|MNMA_WIGBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|25166059|dbj|BAC24250.1| ycfB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 368

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 187/378 (49%), Gaps = 28/378 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  +V++A+SGGVDSSV A  LK+ GY V GV ++ +    +S +   C   +D+ DA+
Sbjct: 2   NKKKKVIIAISGGVDSSVSAWFLKKSGYHVEGVFMKNWEEINSSIK---CTFKKDLKDAQ 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQL 136
            VCD I ++  + ++ E++ N V   F   Y  G TP P + CN+ +KF   L+   +++
Sbjct: 59  IVCDQIGININIVNFSEQYWNKVFKIFLREYKIGNTPNPDILCNKEIKFKYFLNFAIKEM 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD +ATGHY+R       +   +  +    DL++DQSYFL     ++L    FP+G++ 
Sbjct: 119 QADYIATGHYVRKI-----NFNGKSQLFSAFDLKKDQSYFLHQINYKELSKCIFPIGNIL 173

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A ++ L  + K DS  ICF+    +   +K         G I     + +G H
Sbjct: 174 KSKVRYIASKLNLITSKKRDSTGICFIGNKNFNKFIKNYLHDD--PGLIFSTEKKQIGTH 231

Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR+GL +        +P +VV    + + +IV        L    I + E 
Sbjct: 232 KGLMYYTIGQRKGLNIKKIYYNCHDPWYVVDKKIDKNYLIVSQGKNNPYLMSTSIIIIET 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367
           NW+     ++ +    KC VK R  Q+     V   D   + V F K    VA GQ  VF
Sbjct: 292 NWIDQIYLKNPI----KCMVKTRYRQNSTLCLVIPIDKKSIEVIFYKPISSVAPGQYAVF 347

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  D    R LGGGII  
Sbjct: 348 YLLD----RCLGGGIIKS 361


>gi|84498222|ref|ZP_00997019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janibacter sp. HTCC2649]
 gi|84381722|gb|EAP97605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janibacter sp. HTCC2649]
          Length = 374

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/380 (36%), Positives = 202/380 (53%), Gaps = 20/380 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRVV AMSGGVDS+V AA +   G++V+GV L L  S    +     CC  +D  DARRV
Sbjct: 1   MRVVAAMSGGVDSAVAAARMLDAGHEVVGVHLALSRSAATLRESARGCCTIEDAGDARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  ERF+  V+  F + Y AG TP PC+ CN ++KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDMAERFQRDVMDDFVAEYQAGRTPNPCLRCNESIKFAALLDRAVALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V  +G   R + R +D ++DQSY L     +QL    FPLGD  K  
Sbjct: 121 AVATGHYAQIVERVDAEGVTHRELHRAVDPKKDQSYVLGVLDDEQLSRAFFPLGDTAKPQ 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           +R+ A   G  IA K DS DICF+  G     + +        G+IV   +G+++G H G
Sbjct: 181 IREEAAARGFSIAKKPDSYDICFIPDGDTRGFLTKKLGE--QPGEIVDAESGEVVGSHEG 238

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQRRGLG+       EP +VV +D  ++RV++G ++ L V  I      W G  
Sbjct: 239 AYGFTVGQRRGLGLDRSSLDAEPRYVVGVDAPTNRVLIGTQDLLGVDVIVADHARWCG-- 296

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVFYTSD 371
              DA V   +   ++R+  + VP     ++   + V+V  ++   GVA GQ+ V Y   
Sbjct: 297 ---DAPVGEVRVGAQVRAHGEEVPALAWVDESDPELVHVRLDERIRGVAPGQSVVLYDD- 352

Query: 372 SNEARVLGGGIISGSKRSDA 391
               RV+G   I+ + R+ A
Sbjct: 353 ---TRVVGSATIAATSRAGA 369


>gi|315077923|gb|EFT49974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium acnes HL053PA2]
          Length = 360

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 143/375 (38%), Positives = 198/375 (52%), Gaps = 21/375 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V AA L   G+DV GV L L  N R   +    CC+ +D +DARR  D + +
Sbjct: 1   MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF   VI PF + Y AG TP PC+ CN  +KF+ LL     LG D +ATG 
Sbjct: 61  PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGP 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R+++  G        + R +D  +DQSY L    Q QL    FPLG+  K +VR  A 
Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAA 175

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
            +GL +ADK DS DICF+  G     +       + +G+I   +G ++G HNG  ++TIG
Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QRRGL +      G+P +V+ ++  ++ V+VG  E L VH I      W          V
Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           + +    ++R+  DPVP  +     GV V+ E S  GVA GQA VFY  D     V+G  
Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344

Query: 382 IISGSKRSDAVEESL 396
            I G+ R+    E  
Sbjct: 345 TICGTDRAGVKAEQA 359


>gi|116328677|ref|YP_798397.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330666|ref|YP_800384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281579|sp|Q04TZ4|MNMA_LEPBJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122283538|sp|Q04ZN1|MNMA_LEPBL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116121421|gb|ABJ79464.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124355|gb|ABJ75626.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 377

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/384 (35%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
              +++VAMSGGVDS+V A LL  +GY+VIGV L+ +          K SCC+ +D+ DA
Sbjct: 2   SKGKIIVAMSGGVDSAVTAGLLMEEGYEVIGVNLRTWEYEAPVCDTTKKSCCSPEDIRDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V  ++ +  YV   E+ F+  VI  F   Y  G+TP PCV+CN  VKF  L    + L
Sbjct: 62  RDVGLSLKIPFYVVKMEKVFQEKVIDRFIDDYQHGKTPNPCVECNTFVKFGALFEKAKAL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R           R  +   +D+ ++Q+Y+L+  +Q+ L ++ FPLG M 
Sbjct: 122 GIDKIATGHYARIVRN-----GERYAISNGVDIGKNQAYYLYGLSQENLKNVTFPLGGMT 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++AR MGL +ADK++SQ+ICF+ +  Y   +++ +      G     +G+I+G+H
Sbjct: 177 KPEVREIARRMGLSVADKAESQEICFIPENDYRKFLEKKH-VEFTPGFFKLRDGRIIGKH 235

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G  N+TIGQR+GLG+A   PL+V+ ++ +   VI+G           + ++N+ G    
Sbjct: 236 KGRENFTIGQRKGLGIAWRNPLYVIAIE-DDGSVILGEENETYAESFSVIDVNYQGFAPL 294

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +   + F+C V++R    P+   + + ++ + V+  +   GV  GQ+ VFY    N   
Sbjct: 295 GEG--ESFECRVQVRYRHTPIRCRITKMNEDLVVNPLEEVRGVTPGQSAVFY--PLNSDY 350

Query: 377 VLGGGII-SGSKRSD-AVEESLLS 398
           +L GGII  GS R   A EES ++
Sbjct: 351 LLLGGIIRKGSIRMQVAKEESAIA 374


>gi|88809139|ref|ZP_01124648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7805]
 gi|88787081|gb|EAR18239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7805]
          Length = 409

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 143/386 (37%), Positives = 201/386 (52%), Gaps = 31/386 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G+DV G+TL L +       KG+CC  + +
Sbjct: 41  LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWDVEGLTLWLMS------GKGACC-AEGL 93

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D  E F+  ++      Y AG TPLPC  CNR VKFS +L   
Sbjct: 94  VDAAGICEQLEIPHHVVDSRETFQREIVNGLIEGYQAGITPLPCSRCNRAVKFSPMLRWA 153

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++  G   +ATGHY R R    DD   R  + R +D  +DQSYFL+  TQ+ L  + FPL
Sbjct: 154 QEERGLARIATGHYARLRF---DDSSSRWRLLRGLDARKDQSYFLYDLTQEVLDRVVFPL 210

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251
           G++ K   R  A   GL  A K +SQD+C     G     +         +G+IV  +G 
Sbjct: 211 GELTKPDTRLEAARHGLRTAAKPESQDLCLADHHGSMRAFLDAYLP--PRQGEIVLQDGT 268

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+GI ++TIGQR+GLG+A  EPL VV LD   +RV+V  R+        +  INW+
Sbjct: 269 VVGEHDGIEHFTIGQRKGLGIAWSEPLHVVRLDAAMNRVVVATRDQAGRDHCVVGAINWV 328

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDFEKSEVGVA 360
                  A     K  V++R    PVP  +   D               +DF++ +  + 
Sbjct: 329 SIAPP--APGQRQKVHVQVRYRSAPVPAQLTTMDAEASDAEAERPHRCRLDFDEPQFSIT 386

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQA VFY  D+    VLGGG+I  +
Sbjct: 387 PGQAAVFYDGDA----VLGGGLIQTA 408


>gi|240169595|ref|ZP_04748254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium kansasii ATCC 12478]
          Length = 363

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 144/379 (37%), Positives = 198/379 (52%), Gaps = 22/379 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV L L ++  ++ R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-STAPSTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F   VI  F SSYA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFNEDVIDDFVSSYARGETPNPCVRCNQRIKFSALSARALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       DG+    + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLS-----DGR----LRRAVDRDKDQSYVLAVLTARQLRHALFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +ADK DS DICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QIRAEAARRGLAVADKPDSHDICFIPSGDTRAFLGARIG--VRRGLVVDADGAVLATHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+      G P +V  +D  ++ V VG    L+VH +  R   +    
Sbjct: 229 VHEFTIGQRKGLGIPGPGPDGRPRYVTAIDAETATVRVGDVSDLDVHALTGRAPVFTAGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A      C V++R+  + V    +   D + V       GVA GQ  V Y  D   
Sbjct: 289 ----APSGPVDCAVQVRAHGETVAATAELVGDELLVRLHAPLRGVARGQTAVLYRPDPGG 344

Query: 375 ARVLGGGIISGSKRSDAVE 393
             VLG   I+GS R     
Sbjct: 345 DEVLGSATIAGSHRRQTAS 363


>gi|296119548|ref|ZP_06838106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295967431|gb|EFG80698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 361

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/375 (38%), Positives = 199/375 (53%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+VAMSGGVDSSV AA     G++V+GV L L+   + ++ K   CC+ +D  DARR+
Sbjct: 1   MRVLVAMSGGVDSSVAAARAVEAGHEVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ E F+ AVI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSEEFKEAVITDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      +  DG     M R +D  +DQSY L   T ++L    FP+GD  K  
Sbjct: 121 AVATGHYAT----LDKDG----YMRRSLDENKDQSYVLGVITAEELSYCYFPIGDTPKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A+  G   A K DS DICF+  G     +          G IV  +G  L  H+G 
Sbjct: 173 IREEAKRHGFSTASKPDSYDICFIPDGNTQAFLGARIG--MRPGMIVDQDGTELREHDGA 230

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            NYTIGQR+GL +    A G P +V  +D  +  V VG RE+L+V RI    + +L    
Sbjct: 231 WNYTIGQRKGLDIKAPAADGRPRYVTGIDAQTGTVTVGSREALKVTRISADRLKYLH--- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371
              A+   F C V++R+    V     V R+ D + +   +   GVA GQA V Y  + D
Sbjct: 288 --PAMDGEFDCDVQVRAHGSVVSCHAEVDRDADAMILTLNEPLSGVAPGQAAVLYFPSPD 345

Query: 372 SNEARVLGGGIISGS 386
                V+G G I  +
Sbjct: 346 ELGDIVIGSGTIIET 360


>gi|325283230|ref|YP_004255771.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP]
 gi|324315039|gb|ADY26154.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP]
          Length = 422

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 138/381 (36%), Positives = 203/381 (53%), Gaps = 19/381 (4%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T   S          RV+ AMSGGVDSSV AALLK  GY V+G  ++ +   K ++   S
Sbjct: 46  TAPTSPSPSSTAAGTRVLCAMSGGVDSSVTAALLKDQGYSVVGAMMRFWPDDKRTETFDS 105

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+    Y+ARRV + + V  Y+ DY E+F+  ++ PF   YA G TP PCV+CN  VKF
Sbjct: 106 CCSPDAAYEARRVAEQVGVPFYLLDYREQFQQHIVGPFIEEYAKGRTPNPCVNCNTKVKF 165

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            +L+   + LG   +ATGHY++    V + G+      R  D  +DQ+YFL+ T ++ L 
Sbjct: 166 DELVKKAKMLGCQYVATGHYVKR--VVNERGEVEFW--RGDDPRKDQTYFLWGTPREALP 221

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            + FP+G+++K  VR++A E GL  A K +SQ+ICFV  GK  D V      +  +G I 
Sbjct: 222 YILFPVGELEKPRVREIAAERGLLTASKPESQNICFVP-GKVQDFVAEHLPQV--QGHIR 278

Query: 247 HL-NGQILGRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIY 304
            +  G+I+G H G   YT+GQ++GLG+        VV+LD  +  V VG  E      + 
Sbjct: 279 EIRTGEIVGEHLGTQFYTLGQKKGLGLYQTHRVRHVVHLDPATQTVWVGDYEDCLWDDLS 338

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363
             + N+L      D      +  V++R    PV   V   ++ G  + F++ +  VA GQ
Sbjct: 339 ASQANYLV-----DLAELPQRLQVQVRYRTAPVGATVLHADEHGFRLRFDEPQFAVAPGQ 393

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + V Y       R+LGGG+I 
Sbjct: 394 SAVLYDG----PRLLGGGLID 410


>gi|189460624|ref|ZP_03009409.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136]
 gi|189432583|gb|EDV01568.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136]
          Length = 374

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 185/371 (49%), Gaps = 20/371 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ R++V MSGG+DSS    +L+  GY+V+GVT++ ++   +           ++ +A+ 
Sbjct: 3   KEKRILVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIP-SHFSTPEQEQPDEILEAKA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H+V D  E FRN ++  F   Y  G TP PCV CN   K   L     + G 
Sbjct: 62  LAERLGIEHHVADVREEFRNVIVQYFIDEYMKGRTPNPCVMCNPLFKERILCEWADRTGC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      +D K  R +    D  +DQSYFL+   Q+ L  + FPLG M K 
Sbjct: 122 AQIATGHYCRL-----EDRKEHRYIVTGDDPTKDQSYFLWKLPQEILKRMVFPLGGMTKT 176

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
            VR    E G +  A   +S ++CF+    Y D ++     I      G  V   G  LG
Sbjct: 177 EVRAYLAEKGFEAKAKGGESMEVCFI-DKDYRDFLREHCPDIDERIGTGWFVDSKGLKLG 235

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + +IN +   
Sbjct: 236 QHKGFAYYTIGQRKGLEIALGRPAYVLKINPAKNTVMLGDAEQLKAEYMLVEDINVIDLQ 295

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              +         V+IR    P+P  V   D+G + V F+     +  GQ+ VFY     
Sbjct: 296 ELLECP----DLSVRIRYRSRPIPCQVILLDEGHLLVKFKAEASAITPGQSAVFYD---- 347

Query: 374 EARVLGGGIIS 384
           + RVLGGG I+
Sbjct: 348 KGRVLGGGFIA 358


>gi|114566016|ref|YP_753170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122318873|sp|Q0AZQ5|MNMA_SYNWW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114336951|gb|ABI67799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 338

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 28/364 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGG+DS+V A LL+  GY+V G+T+ ++  R+A ++            A R+ 
Sbjct: 1   MKVAVLMSGGIDSTVSALLLREQGYEVTGLTM-VHLEREAGEK------------AARIA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + H V D  E F++AV+  F   Y  G TP PCV CN  +KF  LL     LGAD 
Sbjct: 48  NELQIEHKVVDLREPFQSAVVDYFCREYEQGHTPNPCVKCNEEIKFGLLLKAALDLGADK 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A+GHY R      DD  +   + + +D  +DQSYFL+   QQQL  L FPLG  +KE V
Sbjct: 108 VASGHYARIDY---DDKSQCYRLMKGVDPRKDQSYFLYRLKQQQLSRLIFPLGGYRKEEV 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++AR   L +A++ +SQ++CF+  G Y + ++   +    EG  +   G+ILGRH GI 
Sbjct: 165 REMARRYHLQLAEEKESQEVCFIP-GDYREFIRPHVSY--KEGSFLDRTGKILGRHRGIP 221

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL V+ G PL+V+ +D   +++++G  E L    +  ++ +++    FE  +
Sbjct: 222 FYTIGQRRGLAVSAGRPLYVLKIDPEKNQILLGENEVLFSKLLRFKQNHFICSQDFELLI 281

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K   KIR +       +   +D +  + F++++     GQ+ V+Y  D     VLG
Sbjct: 282 ----KVKAKIRYAARESEAILHCIEDDIWELVFDEAQRAATPGQSVVYYQGD----YVLG 333

Query: 380 GGII 383
           GG I
Sbjct: 334 GGTI 337


>gi|205822510|sp|Q5FR73|MNMA_GLUOX RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 361

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/374 (48%), Positives = 245/374 (65%), Gaps = 25/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAALLKR G++VIG TLQLY+  +A  + G+CCAG+D+ DAR V 
Sbjct: 1   MRILVAMSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQA-AKPGACCAGRDIMDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +   HYV D E RFR++V+  FA +YA GETP+PCV CN+ VKF+DLL + R LG + 
Sbjct: 60  DRLGFPHYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R       +G     M RP+D ERDQ++FLFATT+ QL  LRFPLG+M  K  
Sbjct: 120 MATGHYVRRV-----EGPEGAEMHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAH 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR LA+E+GL+IA K DSQDICFV  G Y ++V+++   +  EG+IV  +G++LGRH G+
Sbjct: 175 VRALAQELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGV 234

Query: 260 INYTIGQRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLG 312
             YT+GQ + LG    A GE   V  +D    R++VGPR    E+     + LR++NWL 
Sbjct: 235 ARYTVGQSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL- 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371
                DA  +G +C V+IR+ +      V+  ++ G  V+  ++ +  A GQACV Y   
Sbjct: 294 ----IDAPAEGVRCGVQIRAREKLREALVKPLENGGALVELTEAAM-PAPGQACVLYDG- 347

Query: 372 SNEARVLGGGIISG 385
              +RVLGGG I+ 
Sbjct: 348 ---SRVLGGGFITA 358


>gi|73969262|ref|XP_538325.2| PREDICTED: similar to tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 isoform a [Canis familiaris]
          Length = 425

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 183/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADRDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F S Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + K+ V+ +A E  L  +  K +S  ICFV +  + + + +       
Sbjct: 183 DALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFILQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P     +
Sbjct: 241 PGKFISIEDNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDGTKGDVFVAPRTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   K+
Sbjct: 300 LYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A GQ  VFY  D      LG G I
Sbjct: 360 VRALALGQFAVFYKGD----ECLGSGKI 383


>gi|167825759|ref|ZP_02457230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 9]
          Length = 352

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 155/326 (47%), Gaps = 22/326 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D  S+ + V        L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN 344
              DG +C  K R  Q   P  V+  
Sbjct: 287 PPADGARCGAKTRYRQADAPCVVRPG 312


>gi|169832175|ref|YP_001718157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Desulforudis audaxviator MP104C]
 gi|205816638|sp|B1I677|MNMA_DESAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169639019|gb|ACA60525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 343

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 189/367 (51%), Gaps = 28/367 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA+SGGVDSS  A L+K  G+ V  +T+   +              +   +A RV   
Sbjct: 4   VAVALSGGVDSSTTALLMKEAGHRVFTLTMATND--------------RVAAEAARVSAF 49

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+V D    F   VI PF ++Y  G TP PC+ CNR +K+  L     + GAD  A
Sbjct: 50  LGLPHHVLDISGLFEQRVIGPFCAAYLEGRTPNPCIACNRDLKYGTLFRQAVEWGADYFA 109

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R R    +    R ++ R  D  +DQSY LF   Q++L  L  PLGD+ KE+VR+
Sbjct: 110 TGHYARVRF---EPEPGRYVLLRARDPRKDQSYVLFYLDQERLARLLLPLGDLTKETVRE 166

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
            AR  G+     ++SQ+ICFV    Y   ++R       EG  V   G +LGRH GI  Y
Sbjct: 167 KARAAGIP-FTAAESQEICFVAGDDYRTFIRRRCGQAVAEGPFVDRQGNVLGRHRGIPFY 225

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+A+G P+FV+  ++  + VIVGP E L        +++++        +++
Sbjct: 226 TIGQRRGLGLALGRPVFVLGFNRERNAVIVGPEEELWHTAFLAVDVHYILPQPAGGTLIE 285

Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                 +IR      P  +     D   V FEK +  +  GQA VFY  +    RV+GGG
Sbjct: 286 -----AQIRYRAKAAPARLYPQPPDAARVVFEKPQRAITPGQAAVFYQGE----RVVGGG 336

Query: 382 IISGSKR 388
           IIS + R
Sbjct: 337 IISCAVR 343


>gi|258543643|ref|YP_003189076.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634721|dbj|BAI00697.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637777|dbj|BAI03746.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640831|dbj|BAI06793.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643886|dbj|BAI09841.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646941|dbj|BAI12889.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649994|dbj|BAI15935.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652984|dbj|BAI18918.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656038|dbj|BAI21965.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 360

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/367 (49%), Positives = 242/367 (65%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR A  +KG+CCAGQD+ DAR V 
Sbjct: 1   MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGA-AKKGACCAGQDIRDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +   HYV D E RF+++VI  FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD 
Sbjct: 60  DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R       +G     + RP D +RDQS+FLFATT+ QL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRRV-----EGPDGAELHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y D+V++++  +A  G+IV   GQI+G+H G+
Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           + +T+GQ + LG A    GE   VV ++    RVI+GPRE   V  + +R++NWL     
Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRDVNWLV---- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            DA  +G  C V++R+ ++P    V    DG  V  E+  +  A GQACVFY       R
Sbjct: 291 -DAPPEGLVCRVQMRAREEPRAARVVPTPDGAMVYLEEPAM-PAPGQACVFYQG----TR 344

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 345 ILGGGFI 351


>gi|57238956|ref|YP_180092.1| tRNA-specific 2-thiouridylase MnmA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578889|ref|YP_197101.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Welgevonden]
 gi|81557340|sp|Q5HBV2|MNMA_EHRRW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57161035|emb|CAH57941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417515|emb|CAI26719.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia ruminantium str. Welgevonden]
          Length = 370

 Score =  404 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/377 (44%), Positives = 233/377 (61%), Gaps = 14/377 (3%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K P     VVAMSGGVDSSV AALL + GY VIG+TLQLYN+   S  KG+C
Sbjct: 6   KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNNNSNTKGAC 65

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V  ++   HY  +YE+ FR  VI  F  +Y  G+TP+PC+ CN+ +KF 
Sbjct: 66  CGSLDTQDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ LGADVL TGHYIR      D       +    D ++DQSYFLFATT +QL  
Sbjct: 126 DLLNATKSLGADVLVTGHYIRKIEQDDD-----IYVYSSKDTKKDQSYFLFATTVEQLRL 180

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  KE +R LA+   L +A+K DSQ+ICFV    Y   +  +      +G+I+ 
Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTDT-YKKTIAELRPHTIKKGNIID 239

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
           +NG IL +HNGI+N+TIGQR+G+G++   PL+V+ L+ +++ V VGP+ +L  +++Y+RE
Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
           INWL     E    +G    VK+RSS    P  +   N++   +  + S   V  GQACV
Sbjct: 300 INWLA---KEKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D    R+LGGG I
Sbjct: 357 IYDHD----RMLGGGWI 369


>gi|168038711|ref|XP_001771843.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676794|gb|EDQ63272.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 421

 Score =  404 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 175/370 (47%), Gaps = 19/370 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDSS+ A LL+R GY+V GV ++ +++R      G C A QD  DA+RVC+ 
Sbjct: 40  VAVGISGGVDSSIAALLLQRQGYEVFGVYMRNWDARDE-AGGGHCSADQDYEDAQRVCEH 98

Query: 83  I-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +  +  +  DY++++   V   F   +A G TP P +DCN+ +KF  LL    Q+GAD  
Sbjct: 99  LAGIKLHHLDYQKKYWTQVFENFTQKFAMGLTPNPDLDCNQHIKFDALLENALQMGADKF 158

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R              + R +D ++DQSYFL +        + FPLG + K  VR
Sbjct: 159 ATGHYARLSR---PQCGGPVQLLRGIDEDKDQSYFLASVGSAAFERVLFPLGGLTKAQVR 215

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGRHNGII 260
           DLA   GL  A K  S  ICFV + K+ D +          G  V ++G   LG H GI 
Sbjct: 216 DLALSEGLVTATKRSSAGICFVGRRKFRDFISEYVE--MEPGPFVCVDGNTHLGLHTGIA 273

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFE 317
            YT GQR G+   + +P +VV  D  ++ V V       +L        +  W+     +
Sbjct: 274 AYTHGQRAGIS-GVPKPFYVVGKDVQNNVVYVAMGADHPALFCTSAVAGDPFWISGSPPK 332

Query: 318 D-AVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                    C  K R  Q      V   D  + V + FE+    +  GQA V Y  D   
Sbjct: 333 QLQDGQPLTCMFKARYRQSLERCTVCFLDSKNEVAIRFEEPTRAITPGQALVLYDGDV-- 390

Query: 375 ARVLGGGIIS 384
              LG  +I+
Sbjct: 391 --CLGASVIA 398


>gi|329113810|ref|ZP_08242581.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001]
 gi|326696820|gb|EGE48490.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001]
          Length = 360

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 179/367 (48%), Positives = 241/367 (65%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR++VAMSGGVDSSVVAA L  +G++V+G TLQLY+SR A  +KG+CCAGQD+ DAR V 
Sbjct: 1   MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGA-AKKGACCAGQDIRDARAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +   HYV D E RF+++VI  FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD 
Sbjct: 60  DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           +ATGHY+R       +G     + RP D +RDQS+FLFATT+ QL  LRFPLGDM  K +
Sbjct: 120 MATGHYVRRV-----EGPEGAELHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +A K DSQD+CFV  G Y D+V++++  +A  G+IV   GQI+G+H G+
Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           + +T+GQ + LG A    GE   VV ++    RVI+GPRE   V  + +R +NWL     
Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRNVNWLV---- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            DA  +G  C V++R+ ++P    V    +G  V  E+  +  A GQACVFY       R
Sbjct: 291 -DAPPEGLFCRVQMRAREEPRAARVVPTPEGAMVYLEEPAM-PAPGQACVFYQG----TR 344

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 345 ILGGGFI 351


>gi|205814900|sp|Q6MLR7|MNMA_BDEBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 360

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 198/372 (53%), Gaps = 20/372 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76
              RV+VAMSGGVDSS  AALL   GY+VIG T+Q+++       +  G+CC+  DV DA
Sbjct: 2   SKGRVLVAMSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V D + +  YV + E +FR AVI PF  +Y  G+TPLPCV+CN  +KF  L+   R+L
Sbjct: 62  RAVADRLGIPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMREL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D +ATGHY +       D K +  +    D  +DQ+YFLF    + +  L FP+GDMK
Sbjct: 122 ECDYIATGHYAKIVY----DDKGKASIHTSTDDWKDQTYFLFTIDPELVPKLLFPVGDMK 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVH-LNGQI 252
           K  VR+ +   GL  A K DSQ ICFV    Y + +K         + +G I     GQ+
Sbjct: 178 KPQVREYSESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQV 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +  H GI NYT GQ +GLG+   E LFV+ +D + + V VG  + L  + +       + 
Sbjct: 238 MASHEGIHNYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVGEEKHLFANEVD------VV 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           D    D + DG    VKIR      P  V +   G  + F + +  V  GQA VFY    
Sbjct: 292 DPKLLDEIQDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFYRD-- 349

Query: 373 NEARVLGGGIIS 384
              +++GGG I+
Sbjct: 350 --RQLVGGGWIT 359


>gi|167837825|ref|ZP_02464708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis MSMB43]
          Length = 311

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 153/321 (47%), Gaps = 22/321 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D  S+ + V        L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV 339
              DG +C  K R  Q   P 
Sbjct: 287 PPADGARCGAKTRYRQADAPC 307


>gi|288818711|ref|YP_003433059.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788111|dbj|BAI69858.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752298|gb|ADO45781.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Hydrogenobacter thermophilus TK-6]
          Length = 354

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/368 (41%), Positives = 209/368 (56%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78
           MRV V MSGGVDSSV A LLK  G++VIGVTL+ +   ++  +     CC+ +DV DA +
Sbjct: 1   MRVAVGMSGGVDSSVSALLLKMAGHEVIGVTLRFHTIPESCSTDDLRVCCSPEDVKDAAK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V + + + H  FD+E  F+  VI  F   YA G+TP PC  CNR VK   L    R++  
Sbjct: 61  VSEKLGIPHITFDWERIFKERVIDYFVQEYAEGKTPNPCAICNRDVKTGFLARYLREVAQ 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LATGHY R   Y     K +R++ R  D  +DQSYFL    ++ L  L FPLGD+ K
Sbjct: 121 VDRLATGHYARLVEY-----KGKRLIARAKDKSKDQSYFLALVRKKDLELLEFPLGDLTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR +A E  L +A K DSQ++CF+   K  + +K      +  G I H++G++LG H 
Sbjct: 176 EQVRRIAVEYSLPVAQKRDSQEVCFLMGKKPGEFIKERVGEAS--GYIKHVSGRVLGTHT 233

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI N+TIGQRRGLGV+  EPL+VV +D  ++ VIVG  E +    + L++IN+    L  
Sbjct: 234 GIYNFTIGQRRGLGVSYHEPLYVVDIDAQTNTVIVGSEELIYKSSLKLKDINFH---LHI 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D    G   +  +R     V V  ++   DG  V+FE    G+  GQ C FY  D     
Sbjct: 291 DKW--GKDVYAVVRYRTQAVKVKDIKETKDGFVVEFETPVRGITPGQVCAFYEGDV---- 344

Query: 377 VLGGGIIS 384
           +LGGGII+
Sbjct: 345 LLGGGIIA 352


>gi|209364581|ref|NP_001125570.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Pongo abelii]
          Length = 421

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 182/388 (46%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  + Q++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +       
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P     +
Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   ++
Sbjct: 300 LYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A+GQ  VFY  D      LG G I
Sbjct: 360 VRALATGQFAVFYKGD----ECLGSGKI 383


>gi|167740138|ref|ZP_02412912.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei 14]
          Length = 311

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 153/321 (47%), Gaps = 22/321 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D  S+ + V        L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFVKIRSSQDPVPV 339
              DG +C  K R  Q   P 
Sbjct: 287 PPADGARCGAKTRYRQADAPC 307


>gi|321458097|gb|EFX69171.1| hypothetical protein DAPPUDRAFT_202999 [Daphnia pulex]
          Length = 409

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/395 (27%), Positives = 183/395 (46%), Gaps = 21/395 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV  +SGGVDSSV A LLK+ GYDV+GV ++ ++        G C + +DV  A+R C 
Sbjct: 9   RVVCGVSGGVDSSVAALLLKKKGYDVVGVFMKNWD---GKDELGVCQSDKDVEVAQRTCK 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V       Y AG TP P + CN  +KF       ++ L AD 
Sbjct: 66  ILNIPFFEVNFVKEYWNHVFENLLQDYQAGLTPNPDILCNYHIKFDLFFDYAKEKLDADF 125

Query: 141 LATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +ATGHY RS L +   +       +    D  +DQ++FL    Q  L    FP+G + K 
Sbjct: 126 VATGHYARSSLGINSVETETENTKLLTSRDDFKDQTFFLSHIKQSSLKKTLFPIGGLLKS 185

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRH 256
            VR LA + GL  ++++ +S  ICF+ +  + + +          G  + ++  + +G+H
Sbjct: 186 EVRKLASDNGLEHVSNRQNSTGICFIGRRNFQEFISEYVPN--NPGPFIDVDTDEEVGQH 243

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            GI  +T+GQR  +G  + +P FV      +  + V       +L          +W+  
Sbjct: 244 LGIHMWTLGQRCRIGGCL-KPYFVASKQPETRTIFVASGTNHPALFSKAFLSSTPHWIHS 302

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E      F CF + + ++      +  +  G+ V  ++    +  GQ  VFY+    
Sbjct: 303 TPRELQENKTFDCFFRFQHTKPLTAAQIAVHQSGLIVTLDRPTRALTPGQYAVFYSG--- 359

Query: 374 EARVLGGGIISGSKRSD---AVEESLLSVIGDEFP 405
               LG   I  +  +D    + E+ +S + D FP
Sbjct: 360 -QECLGCARIVQNLNNDWHNCMTETSISSMYDRFP 393


>gi|68171265|ref|ZP_00544667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657652|ref|YP_507667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Arkansas]
 gi|123492948|sp|Q2GFW6|MNMA_EHRCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|67999312|gb|EAM85959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599109|gb|ABD44578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ehrlichia chaffeensis str. Arkansas]
          Length = 367

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/377 (42%), Positives = 231/377 (61%), Gaps = 17/377 (4%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +++ L  +K+P     VVAMSGGVDSSV AALL + GY VIG+TLQLYN    +  KG+C
Sbjct: 6   KIDPLVKNKSPSATTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYN---NTTGKGAC 62

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C   D  DA++V   +   HY  +YE+ F+  VI  F  +Y  G+TP+PC+ CN+ VKF 
Sbjct: 63  CGSLDTQDAKQVASIMGFPHYTLNYEKVFKEEVIDDFIDTYMQGKTPIPCIKCNQVVKFR 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           DLL+ T+ L AD+L TGHYIR      D       +    D ++DQSYFLFATT +QL  
Sbjct: 123 DLLNATKSLDADILVTGHYIRKIEQDDD-----IYVYSSKDTKKDQSYFLFATTIEQLKF 177

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           LRFPLG+  K+++R LA    L IA+K DSQ+ICFV    Y + + ++      +G+I+ 
Sbjct: 178 LRFPLGNFHKDNIRKLAEHFNLPIANKPDSQNICFVADT-YKNTIAQLRPNAIKKGNIID 236

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G ILG+H+GI+N+TIGQRRG+G++  EPL+V+ L+ +++ V VG + +L  +++++ +
Sbjct: 237 TSGNILGQHDGIVNFTIGQRRGIGLSSKEPLYVIKLNPDTNEVTVGHKSALLQNKLHIEK 296

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           INWL   + +     G    VK+RSS       V  ND +   V  + +   V  GQACV
Sbjct: 297 INWL---VKDKIPHTGLNVKVKLRSSHSGSTAIVYPNDNNKATVLLQDTYCTVTPGQACV 353

Query: 367 FYTSDSNEARVLGGGII 383
            Y  D    R+LGGG I
Sbjct: 354 IYDGD----RMLGGGWI 366


>gi|41409155|ref|NP_961991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81571098|sp|Q73VF7|MNMA_MYCPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41397975|gb|AAS05605.1| hypothetical protein MAP_3057c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 358

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 199/374 (53%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDEFLSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   GL +A+K DS DICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVDADGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEASDLDVREMLGRAVVFTSGT 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A    F+C V++R+  +      +   D + V       GVA GQ    Y  D + 
Sbjct: 289 ----APSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPDG 344

Query: 375 ARVLGGGIISGSKR 388
             VLG   I+G+ R
Sbjct: 345 DEVLGSATIAGTSR 358


>gi|325299223|ref|YP_004259140.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
 gi|324318776|gb|ADY36667.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
          Length = 379

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 179/375 (47%), Gaps = 21/375 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      ++ +A+ 
Sbjct: 3   KDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSHFSTPGQ-EQPDEILEAQA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   + + H+V D  E FR  ++  F   Y  G TP PCV CN   K   L     + G 
Sbjct: 62  VAARLGIEHHVADVREEFRKVIVQYFIDEYMRGRTPNPCVLCNPLFKERILCEWADRTGC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY +     G        +    D  +DQSYFL+   Q+ L  + FPLG M K+
Sbjct: 122 QWIATGHYCQIEKRNG-----WFYIVTGDDATKDQSYFLWKLPQEILSRMLFPLGGMTKD 176

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+     G +  A   +S +ICF+    Y + ++     I      G  V   G  LG
Sbjct: 177 KVREYLAHKGFEAKAKGGESMEICFI-DKDYREFLREHCPDIDERIGPGWFVDSKGVKLG 235

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GLG+A+GEP +V+ ++   + V++G  + L    +           
Sbjct: 236 QHKGFAYYTIGQRKGLGIALGEPAYVLKINPEKNTVMLGDADQLRTEYMLAEPPV----A 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
              + ++      V+IR    P+P   V+  ++G + V F      +  GQ+ VFY  + 
Sbjct: 292 PDIEELLACPNLSVRIRYRSRPIPCQVVRLPENGYLLVRFAVEASAITPGQSAVFYDGN- 350

Query: 373 NEARVLGGGIISGSK 387
              RVLGG  I+  +
Sbjct: 351 ---RVLGGSFIASQQ 362


>gi|120403098|ref|YP_952927.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166235070|sp|A1T6X1|MNMA_MYCVP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119955916|gb|ABM12921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 357

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 146/373 (39%), Positives = 197/373 (52%), Gaps = 22/373 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  SYA GETP PCV CN  +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALSARALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+    + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DALATGHYARL-----TDGR----LRRAVDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++R+ A   GL +ADK+DS DICF+  G     +          G +V   G +L  H+G
Sbjct: 171 AIREEAARRGLAVADKADSHDICFIPSGDTRAFLGARIG--VRRGSVVDATGAVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+      G P +V  +D  +  V VG    LEV  +      +    
Sbjct: 229 VHGFTIGQRKGLGIPGPGPDGRPRYVTGIDAETGTVHVGDVTDLEVTSLLGEAPVFTSGV 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A     +C V++R+    V    +  D  + V       GVA GQ  V Y SD + 
Sbjct: 289 ----APDAPVECAVQVRAHGGVVDAVAELRDGALEVSLRTPLRGVAPGQTLVLYRSDPDG 344

Query: 375 ARVLGGGIISGSK 387
             VLG   IS ++
Sbjct: 345 DEVLGSATISAAR 357


>gi|198274021|ref|ZP_03206553.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135]
 gi|198273099|gb|EDY97368.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135]
          Length = 375

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 188/374 (50%), Gaps = 21/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DSS    +L+  GY+V+GVT++ ++   AS          +V +A+ 
Sbjct: 4   REKRVLVGMSGGIDSSAACIMLQEQGYEVVGVTMRTWD--VASHFTPGNDQPNEVIEAQE 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H+V D    FR  ++  F   Y  G TP PCV CN   K   L     +   
Sbjct: 62  LAARLGIEHHVADVRTEFRQVIVQYFIDEYMRGRTPNPCVMCNPLFKERILCEWADKCNC 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY + +     D    R +    D  +DQSYFL+   Q+ L  + FPLG M K 
Sbjct: 122 AWIATGHYCQLK-----DLNGYRYILTGDDPLKDQSYFLWKLPQEILKRMMFPLGGMTKA 176

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
           SVRD     G +  A   +S +ICF+++  Y + +K     I      G  V   G  LG
Sbjct: 177 SVRDYLASKGFEAKARGGESMEICFIEK-DYREFLKEHCPDIDERIGPGWFVDNKGLKLG 235

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + L+ + + + + N     
Sbjct: 236 QHKGFAYYTIGQRKGLEIALGKPAYVLKINPAKNTVMLGDADQLKTYYMLVEDYN----V 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                +++  +  V+IR     +P  V   D+G + V FE+    +  GQ+ VFY  +  
Sbjct: 292 ASLAELLNCKELSVRIRYRSRSIPCRVILLDNGQLLVRFEQEASAITPGQSAVFYEGN-- 349

Query: 374 EARVLGGGIISGSK 387
             RVLGGG I+  +
Sbjct: 350 --RVLGGGFIASQQ 361


>gi|317969133|ref|ZP_07970523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0205]
          Length = 397

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 198/398 (49%), Gaps = 31/398 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  +EA  L    L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +    
Sbjct: 15  VAATEAGALAIERLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS---- 70

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              KG+CC  + + DA  VC+ + V H+V D+ E F+  ++      Y AG TPLPC  C
Sbjct: 71  --GKGACC-AEGLVDAAGVCEQLEVPHHVVDFREHFKEQIVDFLVQGYEAGVTPLPCSRC 127

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           NR VKF  +L   ++    D +ATGHY R R     +   R  + R +D  +DQSYFL+ 
Sbjct: 128 NREVKFGPMLRWAKEERKIDRIATGHYARVRHGDQSE-NGRHQLLRGLDERKDQSYFLYD 186

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAG 238
             Q+ L  L FPLG++ K   R  A   GL  A K +SQD+C     G     +      
Sbjct: 187 LPQEALGRLVFPLGELTKPDTRLEADRHGLRTAQKPESQDLCLADHHGSMKAFLDAYLP- 245

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298
               G IV  +GQ++G H+GI ++TIGQR+GLGVA  EPL VV LD   ++V+V PR   
Sbjct: 246 -PRPGQIVLADGQVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGVMNQVVVAPRRDA 304

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----------G 347
                 +  +NW+          +     V++R    P    +    +            
Sbjct: 305 ARGEAVVGAVNWVSIA----PPTEPLDVEVQVRYRSGPQQARLIPLPETESDRAADRPHR 360

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             ++F + +  +  GQA VFY  +     VLGGG+I  
Sbjct: 361 CRLEFAEEQFSITPGQAAVFYAGE----MVLGGGLIQR 394


>gi|118617523|ref|YP_905855.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium ulcerans Agy99]
 gi|166235069|sp|A0PPW5|MNMA_MYCUA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822174|sp|B2HIE6|MNMA_MYCMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118569633|gb|ABL04384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU
           [Mycobacterium ulcerans Agy99]
          Length = 363

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 190/371 (51%), Gaps = 20/371 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDSSV AA +   G+DV+GV L L  +  A +     CC+ +D  DARRV
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLALSTAPGALRTGSRGCCSKEDASDARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ ERF+  VI  F SSYA GETP PC+ CN+ +KFS L +    LG D
Sbjct: 61  ADVLGIPFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TGHY R              + R +D ++DQSY L   T +QL    FP+GD  K  
Sbjct: 121 VVVTGHYARLSEG---------RLRRAVDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKPQ 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A   GL +ADK DS DICF+  G     +          G +V   G +L  H+G+
Sbjct: 172 IREEASRRGLAVADKPDSHDICFIPSGNTQTFLGERIG--VRRGTVVDAAGAVLATHDGV 229

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +TIGQR+GLG+      G P +V  +D  +  V VG    L+VH +  R   +     
Sbjct: 230 HGFTIGQRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAGT- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              A     +C V++R+  +      +   D + V       GVA GQ  V Y  D +  
Sbjct: 289 ---APTGPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPDGD 345

Query: 376 RVLGGGIISGS 386
            VLG   I+ +
Sbjct: 346 EVLGSATITAT 356


>gi|255020959|ref|ZP_05293015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969750|gb|EET27256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 348

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/364 (42%), Positives = 211/364 (57%), Gaps = 21/364 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VVA+SGGVDS+V AALL   G+D++GVTL+L+        +  CC  +D+ DA  +C 
Sbjct: 3   RIVVALSGGVDSAVAAALLADAGHDLVGVTLRLWP-------QSRCCDERDIEDAADLCA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + V DY +RFR A++ PF + Y AG TP PC  CN+ +KF+ L   +  LGAD L
Sbjct: 56  QLGIPYRVLDYRQRFREAIVEPFVADYLAGRTPNPCARCNQLLKFTALWQESAALGADFL 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R R  VGDD      + R +D  +DQSYFLFA   + L  LRFPLG+ +KE VR
Sbjct: 116 ATGHYVRLR-EVGDD----WQLRRAVDERKDQSYFLFAVPGELLPRLRFPLGEWRKEEVR 170

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             AR+ GL IA K DSQD+CF+  G     +K         GDIV   G +LG+H G+++
Sbjct: 171 TWARQRGLAIAAKGDSQDLCFIPDGDTGAFIKSQTQVEVRPGDIVDATGAVLGQHEGLVH 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG     P +V+ LD   +R+ VGP  +L      LR+ NWL       +V 
Sbjct: 231 YTVGQRRGLGGGAAVPRYVLALDAKHNRLQVGPEAALFRGEARLRDCNWLT----TQSVA 286

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                 VK+R +  PVP  ++  D    ++ F   +  +  GQA V Y  D    R+LGG
Sbjct: 287 LDTPVTVKLRYAASPVPATLRLLDGAAAHLRFATPQRAITPGQAAVCYDGD----RLLGG 342

Query: 381 GIIS 384
           G I+
Sbjct: 343 GWIA 346


>gi|330881196|gb|EGH15345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 165/307 (53%), Gaps = 18/307 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312
            +TIGQR+GLG+        +P +V+  D +++ +IVG       L    +   EI W  
Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWAN 291

Query: 313 DGLFEDA 319
                  
Sbjct: 292 PIDLSSP 298


>gi|257466420|ref|ZP_05630731.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917577|ref|ZP_07913817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691452|gb|EFS28287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 350

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 30/378 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           + +++  +  K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++              C
Sbjct: 1   MVNMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TC 47

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +D  DA++VC+ + + HYV D  E F   V+  F   Y  G+TP PC+ CNR +KF  
Sbjct: 48  HAED-ADAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGK 106

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL      GA  +ATGHY +       DG     +    D  +DQ YFL    +++L  +
Sbjct: 107 LLDFILGQGAQYMATGHYTKLV-----DG----HLSVGDDGGKDQVYFLSQVPKEKLKKI 157

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247
            FP+G+++K  VR+LA+E+G+ +  K DSQ+ICFV+ GK  + + ++    +  +G+IV 
Sbjct: 158 IFPVGELEKTQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIVD 217

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG+ILG+HNG+  YTIGQR+GLG++   PL+VV L+   + +IVG  E L   ++   +
Sbjct: 218 KNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAEQ 277

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACV 366
            N       E+  +    C+ K RS        ++   D V   F +     V  GQ  V
Sbjct: 278 CNLFLVDKLEE--LHNMNCYAKTRSRDTLHACRLEVIGDEVIAHFIDNKVRAVTPGQGVV 335

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY       +V+ GG I 
Sbjct: 336 FYN---ELGQVIAGGFIK 350


>gi|126338828|ref|XP_001378676.1| PREDICTED: similar to Zona pellucida protein C [Monodelphis
           domestica]
          Length = 428

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 179/388 (46%), Gaps = 34/388 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV  A+SGGVDS+V A LL+R GY+V GV ++ +++       G C A +D  DA RVC 
Sbjct: 13  RVACAVSGGVDSAVAALLLRRRGYEVTGVFMRNWDALDEVSGSG-CSADRDCEDAARVCR 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++      + + + + V   F S Y  G TP P + CN+ +KF          LGAD 
Sbjct: 72  LLDIPFRQVAFVKEYWHHVFTDFLSEYEKGRTPNPDILCNKHIKFKAFFHYALDCLGADA 131

Query: 141 LATGHYIRSRLYVGD-----DGKRRRIMCR-------------PMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +     +  R R + R               DL +DQ++FL    Q
Sbjct: 132 MATGHYARTSLEDEEVFAQKEEPRPRGLFRNRFEVRNTVKLLQGADLWKDQTFFLSQAPQ 191

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           + L    FPLG + K  V+ +A E GL  +  + +S  ICF+ +      + +       
Sbjct: 192 EALRRTLFPLGGLTKAFVKKIAAENGLHHVLQRKESMGICFIGKRHLESFLLQYLQ--PQ 249

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G+ V + + ++LG H G   +T+GQ   +G  + +P +VV  D  S  V V P     +
Sbjct: 250 PGNFVSIEDNKVLGTHQGCFLFTLGQGAKIG-GLRDPWYVVEKDLRSGDVFVAPGPDHPA 308

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D    C  + R     VP  +  N DG V+V   K 
Sbjct: 309 LYRDLLRTGRVHWIAEEPPAPLVQDKMMDCHFRWRHQMALVPCVLTLNQDGTVWVTAVKP 368

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A GQ  VFY  D      LG G I
Sbjct: 369 MKALAPGQFAVFYKGD----ECLGSGKI 392


>gi|21312518|ref|NP_082339.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Mus musculus]
 gi|14195274|sp|Q9DAT5|MTU1_MOUSE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|12838169|dbj|BAB24110.1| unnamed protein product [Mus musculus]
 gi|26335739|dbj|BAC31570.1| unnamed protein product [Mus musculus]
 gi|26336146|dbj|BAC31758.1| unnamed protein product [Mus musculus]
 gi|33867793|gb|AAQ55218.1| 5'methylaminomethyl-2-thiouridylate-methyltransferase [Mus
           musculus]
 gi|38512243|gb|AAH61026.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus
           musculus]
 gi|148672470|gb|EDL04417.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus
           musculus]
          Length = 417

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 183/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGVCAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P ++CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +      + +       
Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  V + +  +LG H G   YT+GQR  +   + EP +VV  D     V+V P     +
Sbjct: 241 PGKFVSIEDNTVLGTHKGWFLYTLGQRAKIS-GLREPWYVVEKDGTKGDVLVAPRVDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   K+
Sbjct: 300 LYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
             G+A GQ  VFY  +      LG G I
Sbjct: 360 VRGLALGQFAVFYKGE----ECLGSGKI 383


>gi|329121788|ref|ZP_08250404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister micraerophilus DSM 19965]
 gi|327468061|gb|EGF13549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister micraerophilus DSM 19965]
          Length = 352

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 199/366 (54%), Gaps = 27/366 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+ AMSGGVDS++   LL+  GY+V G T+QL++             GQ++ DA+ + 
Sbjct: 7   KRVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLNDAKEMA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             + + H V D  E ++  V+  F  SY  G TP PC+ C+  +KF      ++     D
Sbjct: 54  KFLGIKHAVIDIRELYKKIVLEYFIDSYKNGITPNPCMMCDFKLKFGVFYDESKAMFDCD 113

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHY R    V D  +++  + + +DL +DQSY ++  TQ+QL  + FPLG + K+ 
Sbjct: 114 YFATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKD 170

Query: 200 VRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +++E GL   +K++SQDICF+  +  Y D +K        EG IV+  G+ILG+H+G
Sbjct: 171 TRRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I NYTIGQR+GLG+    P +VV +D  ++++IVG  E L   ++  +++ +        
Sbjct: 231 IPNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDG----K 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F    K+R         V+  DDG   V F++ +  + SGQ+ VFY  D    R+
Sbjct: 287 PPAQEFTAEGKVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342

Query: 378 LGGGII 383
           +GGG I
Sbjct: 343 IGGGTI 348


>gi|94984899|ref|YP_604263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus geothermalis DSM 11300]
 gi|205816613|sp|Q1J090|MNMA_DEIGD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94555180|gb|ABF45094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus geothermalis DSM 11300]
          Length = 381

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 205/380 (53%), Gaps = 19/380 (5%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++    RV+ AMSGGVDSSV AALLK  GY VIG  ++ +   K      +CC+    Y+
Sbjct: 4   QDKASQRVLCAMSGGVDSSVTAALLKDAGYQVIGAMMRFWPDDKRVDTFDTCCSPDAAYE 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV + + V  Y+ DY E+F++ ++ PF S YA G TP PCV+CN  VKF +L+   + 
Sbjct: 64  ARRVAEQVGVPFYLLDYREQFQHHIVGPFLSEYAQGRTPNPCVNCNTKVKFDELVKKAKM 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG   +ATGHY++      +DG       R  D  +DQ+YFL+ T ++ L  + FP+G++
Sbjct: 124 LGCRYVATGHYVKR--VEREDGSVEFH--RGDDPRKDQTYFLWGTPREALPFILFPVGEL 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           +K  VR++A E GL  A K +SQ+ICFV  GK  D V         +G I  +  G+++G
Sbjct: 180 EKPRVREIAAEKGLLTARKPESQNICFVP-GKVQDFVAEHLPQ--RQGLIREIRTGEVVG 236

Query: 255 RHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
            H G   YT+GQ++GLG+        VV+LD  ++ V VG  E      +     N+L  
Sbjct: 237 EHLGTQFYTLGQKKGLGLYQTHRVRHVVHLDPETNTVWVGDYEDCLWTGLKAEGANYL-- 294

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               D      +  V++R    PV   V   ++ G  + FE+ +  VA GQ+ V Y    
Sbjct: 295 ---LDLAELPREVEVQVRYRTKPVRATVLHADEHGFELQFEEPQFAVAPGQSAVLYAG-- 349

Query: 373 NEARVLGGGIISGSKRSDAV 392
              R+LGGG+I+   R+  V
Sbjct: 350 --TRLLGGGLIADHARNLPV 367


>gi|205821882|sp|A0QJE5|MNMA_MYCA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 358

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   GL +A+K DS DICF+  G     +          G +V+ +G +L  H+G
Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVNADGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSGT 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A    F+C V++R+  +      +   D + V       GVA GQ    Y  D + 
Sbjct: 289 ----APSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPDG 344

Query: 375 ARVLGGGIISGSKR 388
             VLG   I+G+ R
Sbjct: 345 DEVLGSATIAGTSR 358


>gi|109094553|ref|XP_001111019.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           isoform 2 [Macaca mulatta]
          Length = 422

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 183/388 (47%), Gaps = 35/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYIKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + + +     
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQ-SYLQPR 241

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P     +
Sbjct: 242 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDGVKGNVFVAPRRDHPA 300

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   ++
Sbjct: 301 LYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 360

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              + +GQ  VFY  D      LG G I
Sbjct: 361 VHALTTGQFAVFYKGD----ECLGSGKI 384


>gi|254776291|ref|ZP_05217807.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 358

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDAFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   GL +A+K DS DICF+  G     +          G +V+ +G +L  H+G
Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVNADGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSGT 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A    F+C V++R+  +      +   D + V       GVA GQ    Y  D + 
Sbjct: 289 ----APSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPDG 344

Query: 375 ARVLGGGIISGSKR 388
             VLG   I+G+ R
Sbjct: 345 DEVLGSATIAGTSR 358


>gi|209529646|ref|NP_001129348.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Rattus norvegicus]
 gi|149065691|gb|EDM15564.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 417

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 183/388 (47%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +      + +       
Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +   + EP +VV  D     V+V P     +
Sbjct: 241 PGKFISIEDNRVLGTHKGWFLYTLGQRAKIS-GLSEPWYVVEKDGTKGDVLVAPRVDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   K+
Sbjct: 300 LYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
             G+A GQ  VFY  +      LG G I
Sbjct: 360 VRGLALGQFAVFYKGE----ECLGSGKI 383


>gi|257452558|ref|ZP_05617857.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|317059098|ref|ZP_07923583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684774|gb|EFS21609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
          Length = 350

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 30/378 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           + +++  +  K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++              C
Sbjct: 1   MVNMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TC 47

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +D  DA++VC+ + + HYV D  E F   V+  F   Y  G+TP PC+ CNR +KF  
Sbjct: 48  HAED-ADAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGK 106

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL      GA  +ATGHY +       DG     +    D  +DQ YFL    +++L  +
Sbjct: 107 LLDFILGQGAQYMATGHYTKLV-----DG----HLSVGDDGGKDQVYFLSQVPKEKLKKI 157

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247
            FP+G+++K  VR+LA+E+G+ +  K DSQ+ICFV+ GK  + + ++    +  +G+IV 
Sbjct: 158 IFPVGELEKIQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIVD 217

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            NG+ILG+HNG+  YTIGQR+GLG++   PL+VV L+   + +IVG  E L   ++   +
Sbjct: 218 KNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAEQ 277

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACV 366
            N       E+  +    C+ K RS        ++   D V   F +     V  GQ  V
Sbjct: 278 CNLFLVDKLEE--LHNMNCYAKTRSRDTLHACRLEVLGDEVIAHFIDNKVRAVTPGQGVV 335

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY       +V+ GG I 
Sbjct: 336 FYN---ELGQVIAGGFIK 350


>gi|313892248|ref|ZP_07825841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister microaerophilus UPII 345-E]
 gi|313119386|gb|EFR42585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dialister microaerophilus UPII 345-E]
          Length = 352

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 199/366 (54%), Gaps = 27/366 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+ AMSGGVDS++   LL+  GY+V G T+QL++             GQ++ DA+ + 
Sbjct: 7   KRVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLDDAKEMA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             + + H V D  E ++  V+  F  SY  G TP PC+ C+  +KF      ++     D
Sbjct: 54  KFLGIKHAVIDIRELYKKIVLEYFIDSYKNGVTPNPCMMCDFKLKFGVFYDESKAMFDCD 113

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHY R    V D  +++  + + +DL +DQSY ++  TQ+QL  + FPLG + K+ 
Sbjct: 114 YFATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKD 170

Query: 200 VRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            R +++E GL   +K++SQDICF+  +  Y D +K        EG IV+  G+ILG+H+G
Sbjct: 171 TRRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHG 230

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I NYTIGQR+GLG+    P +VV +D  ++++IVG  E L   ++  +++ +        
Sbjct: 231 IPNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDG----K 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                F    K+R         V+  DDG   V F++ +  + SGQ+ VFY  D    R+
Sbjct: 287 PPAQEFTAEGKVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342

Query: 378 LGGGII 383
           +GGG I
Sbjct: 343 IGGGTI 348


>gi|318042099|ref|ZP_07974055.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0101]
          Length = 394

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 201/398 (50%), Gaps = 31/398 (7%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  + A  L    L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +    
Sbjct: 15  VAATPAGALALERLQAWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMS---- 70

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              KG+CC  + + DA  +C+ + V H+V D+ E F+  ++      Y  G TPLPC  C
Sbjct: 71  --GKGACC-AEGLVDAAGICEQLGVEHHVVDFREHFKEQIVDFLVQGYGDGITPLPCSRC 127

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           NR VKF  +L   ++  G   +ATGHY R       D   R  + R +D ++DQSYFL+ 
Sbjct: 128 NREVKFGPMLHWAQEERGISRIATGHYARVCHGEQSD-NGRHQLLRGLDRQKDQSYFLYD 186

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAG 238
             Q+ L  L FPLG++ K   R  A   GL  A+K +SQD+C     G     +      
Sbjct: 187 LPQEALGRLVFPLGELTKADTRVEAARHGLRTAEKPESQDLCLADHHGSMRAFLDTYLP- 245

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298
              +G+IV  +GQ++G+H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR   
Sbjct: 246 -PRQGEIVLEDGQVVGQHDGIQHFTIGQRKGLGVAWSEPLHVVRLDGVMNRVVVAPRRDA 304

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDG 347
                 +  +NW+     ++ +    +  V++R     V   +                 
Sbjct: 305 ARSDAVVGAVNWVSIAPPQEPI----EVEVQVRYRSGAVAARLSPLDATDADAAAGRPHR 360

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             ++F + +  +  GQA VFY  D    RVLGGG+I  
Sbjct: 361 CRLEFAEEQFSITPGQAAVFYAGD----RVLGGGLIQR 394


>gi|183220730|ref|YP_001838726.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910831|ref|YP_001962386.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|205816873|sp|B0SPC6|MNMA_LEPBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816879|sp|B0SG84|MNMA_LEPBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167775507|gb|ABZ93808.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779152|gb|ABZ97450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 380

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 199/370 (53%), Gaps = 13/370 (3%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYD 75
            +  +++VAMSGGVDS+V A LL   GYDVIGV L+ +          K SCC+ +D+ D
Sbjct: 2   KEKEKIIVAMSGGVDSAVAAGLLMEAGYDVIGVNLRTWEYEAPACDTTKKSCCSPEDIRD 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR V  ++N+  YV   E+ F   VI  F S Y  G TP PCV+CN  VKF  L    ++
Sbjct: 62  ARDVGLSLNIPFYVIKMEKVFGERVIDRFISDYKDGRTPNPCVECNTFVKFGALFEQAKK 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG D +ATGHY R     G     R  +   +D++++Q+Y+L+  +Q  + +  FPLG+M
Sbjct: 122 LGIDKIATGHYARVIEVDG-----RYAIRNAVDMKKNQTYYLYGLSQDNIKNTVFPLGEM 176

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR++A+ MGL +A+K +SQ+ICF+ +  Y   +K+        G     +GQI+G+
Sbjct: 177 DKSEVREIAKRMGLPVAEKPESQEICFIPENDYRSFLKK-KGMEFTPGFFKLASGQIIGK 235

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   +TIGQR+GLG+A   PL+V+ ++ +   V++G  E        L EI +    L
Sbjct: 236 HQGKEGFTIGQRKGLGIAWKNPLYVLSIE-DDGTVVLGEEEETVSESFVLEEITY--QAL 292

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              A+    +  V+IR    PV   V    +   V+F +    V  GQ+  FY   +N  
Sbjct: 293 APLALGQSMEMKVQIRYRSAPVHCKVTSLGETWKVNFLEDVKSVTPGQSATFY--PTNGD 350

Query: 376 RVLGGGIISG 385
            +  GGII  
Sbjct: 351 YLFAGGIIQK 360


>gi|240047229|ref|YP_002960617.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma conjunctivae
           HRC/581]
 gi|239984801|emb|CAT04780.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma conjunctivae]
          Length = 370

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 185/389 (47%), Gaps = 36/389 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74
           R+VV +SGGVDSSV A LLK+ G++VI V ++ ++S   +  KG+       C   +D  
Sbjct: 3   RIVVGLSGGVDSSVTAYLLKQQGHEVIAVFMRNWDSTINNDIKGNDSYQDHICPQEKDWL 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA+++   +++  +  D+ + + N V       Y  G+TP P + CN+ +KF   L+ + 
Sbjct: 63  DAQKIAKQLDIPIHRVDFIDEYWNEVFEDLIEKYKNGKTPNPDILCNKNIKFKHFLNYSI 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +  AD +A GHY ++             +    D  +DQSYFL   + +QL  + FPLG
Sbjct: 123 EKFKADFIAMGHYAKT---------ENSFLFEAKDENKDQSYFLSQLSNEQLKKVLFPLG 173

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
           D  K+ VR +A E  L   DK DS  ICF+ + ++ D ++      +  G+IV +   +I
Sbjct: 174 DYTKDQVRKIAFEQNLITHDKKDSTGICFIGERRFSDFLQNYIP--SQPGNIVDITTQKI 231

Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
           +GRH G + +TIGQR+G G+  M +P FVV  +     + V P   R  L  + +    +
Sbjct: 232 VGRHVGAMYFTIGQRKGFGLSGMSQPYFVVGHNLAQKILYVAPQDQRHWLVSNNLLASHL 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367
           N L          +      K R  Q  V V ++  D D   V ++     V  GQ  V 
Sbjct: 292 NILNANF------NPNNLKAKFRYHQKAVAVQIKIIDNDQFQVYYDD-FEAVTPGQEVVI 344

Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396
           Y        V+  G I    ++    + L
Sbjct: 345 YDG----PMVVISGQIEKVFQNQKELDYL 369


>gi|116747617|ref|YP_844304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobacter fumaroxidans MPOB]
 gi|205828997|sp|A0LEL7|MNMA_SYNFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116696681|gb|ABK15869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 362

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 189/374 (50%), Gaps = 21/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +RV VAMSGGVDS   A LLK  G DV GV ++         R G  CAG  + +   
Sbjct: 3   RSLRVAVAMSGGVDSLRAAILLKEQGNDVFGVHMR----HVPPSRTGRWCAGAMIREKEA 58

Query: 79  -VCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +C+          V D  + F + VI PF  +Y  G+TP PC+ CN  VKF  L+   R
Sbjct: 59  FLCELGLRFGFPIAVVDLRDAFESHVIEPFMEAYLLGQTPNPCIFCNPAVKFGFLMEKAR 118

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+  ATGHY R          RR  + R  DL +DQSYFL+  +Q QL    FPLG 
Sbjct: 119 ALGAERFATGHYARVSPPGPT--SRRFRLLRGSDLSKDQSYFLYGLSQDQLASTLFPLGS 176

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--GIALEGDIVHLNGQI 252
            +K  V   A ++G+      +SQ+ICFV  GKY + +           EG I+ L G+ 
Sbjct: 177 TRKRDVSAWAGQLGIASLFPGESQEICFVPAGKYHEFLTERLDTLHAPAEGPILDLEGRE 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRH GI  YTIGQRRGLG+A   PL+VV L+  ++ V VG    L+  R+ +  +NW+ 
Sbjct: 237 LGRHKGIFAYTIGQRRGLGIASSAPLYVVGLEPAANAVRVGRVGDLDRDRLEVGRVNWVS 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                 A     +C V+IR+   P    V    +    V FE  +  V  GQ+ VFY  D
Sbjct: 297 I----PAPNVPVRCRVRIRNQHAPAAAVVTPVGERSASVRFEAPQRAVTPGQSAVFYDGD 352

Query: 372 SNEARVLGGGIISG 385
                VLGGG IS 
Sbjct: 353 V----VLGGGTISK 362


>gi|283769381|ref|ZP_06342280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bulleidia extructa W1219]
 gi|283104038|gb|EFC05422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bulleidia extructa W1219]
          Length = 378

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 186/383 (48%), Gaps = 29/383 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           M+++V +SGGVDS++ A LL++ G++V    ++ ++S       G+       C    D 
Sbjct: 1   MKILVGLSGGVDSAIAAYLLRQQGHEVTCAFMRNWDSVANGDFSGNPTLNDPVCSQESDY 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V D + +     D+ + + + V   F + Y  G TP P + CNR +KF++ ++  
Sbjct: 61  ADAQAVADKLGLPLLRVDFIKEYWDDVFQTFLNDYKKGRTPNPDILCNRYIKFAEFMNFA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G + +ATGHY++     G       ++ +  D  +DQSYFL    ++ L  + FPL 
Sbjct: 121 QKKGFETVATGHYVKLGYENG-----HGVLMKADDRNKDQSYFLAEVHREVLDHVVFPLA 175

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
           +++K  VRD+A E+GL IA K DS  ICF+ +  +   +          G I++ +  +I
Sbjct: 176 EIEKPKVRDMAFELGLSIAKKKDSTGICFIGERNFRAFLSNYLP--MKPGKIMNIVEQKI 233

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G H G++ YTIGQR+GL +    P FVV  +  ++ + V     R  L      +  +N
Sbjct: 234 VGEHKGVLYYTIGQRKGLDIGGIGPFFVVGKNVETNTLYVVDQEHRSWLRSDSCLVTHVN 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           WL D +F            K R  Q    V +++ D+  + + + +    V  GQ  V Y
Sbjct: 294 WLADRMF------PLNGGAKFRYRQQDQAVTMEKVDEQTLLLKYPQGVEAVTPGQEAVLY 347

Query: 369 TSDSNEARVLGGGIISGSKRSDA 391
             +      + GG I    ++  
Sbjct: 348 DGNVM----IAGGQIDVVYQNGQ 366


>gi|75055053|sp|Q5RB73|MTU1_PONAB RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|55728489|emb|CAH90987.1| hypothetical protein [Pongo abelii]
          Length = 422

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 182/389 (46%), Gaps = 37/389 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFAT-T 181
           +ATGHY R+ L   +  +++ I                  + +  D  + Q++FL    +
Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVFS 182

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +      
Sbjct: 183 QDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--P 240

Query: 241 LEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RE 296
             G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P     
Sbjct: 241 RPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHP 299

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354
           +L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   +
Sbjct: 300 ALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQ 359

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383
           +   +A+GQ  VFY  D      LG G I
Sbjct: 360 AVRALATGQFAVFYKGD----ECLGSGKI 384


>gi|145224833|ref|YP_001135511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium gilvum PYR-GCK]
 gi|315445164|ref|YP_004078043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. Spyr1]
 gi|189040505|sp|A4TDZ4|MNMA_MYCGI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145217319|gb|ABP46723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium gilvum PYR-GCK]
 gi|315263467|gb|ADU00209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. Spyr1]
          Length = 357

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 192/372 (51%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVAAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  SYA GETP PCV CN  +KFS L S    LG 
Sbjct: 60  VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALASRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+    + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DALATGHYARLA-----DGR----LRRAVDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A  +GL +ADK+DS DICF+  G     +          G++V   G +L  H+G
Sbjct: 171 QIREEAARLGLAVADKADSHDICFIPSGDTKAFLGARIG--VRRGNVVDAAGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+      G P +V  +D  +  V VG    LEV  +      +    
Sbjct: 229 VHGFTIGQRKGLGIPGPGPDGSPRYVTGIDAQTGTVHVGDVADLEVTSLQGDAPVFTSGV 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A     +C V++R+         +   D + V       GVA GQ  V Y  D   
Sbjct: 289 ----APTGPLECVVQVRAHGGVADAVAELRGDTLEVSLRTPLRGVAPGQTLVLYRRDPAG 344

Query: 375 ARVLGGGIISGS 386
             VL    I  +
Sbjct: 345 DEVLASATIRAT 356


>gi|302035751|ref|YP_003796073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrospira defluvii]
 gi|300603815|emb|CBK40147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrospira defluvii]
          Length = 360

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 195/371 (52%), Gaps = 23/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS------KRKGSCCAGQDVYDA 76
           V++ MSGGVDSSV A+LL + GYDV G+TLQ++              +  CC    +  A
Sbjct: 6   VLLGMSGGVDSSVAASLLVQQGYDVHGITLQVWEHEDDQIAVSKRWEERGCC---KIGIA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + V   + + + V D  E F+  VI  F + YA+G TP PCV CN  VK   L ++ ++ 
Sbjct: 63  KYVAQRLRIPYEVVDRREVFQQGVIDDFVAGYASGTTPNPCVRCNERVKLRSLYALAQER 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D +ATGHY R +   G     +  + R +D  +DQSYFL+      L  L FP+G M+
Sbjct: 123 GMDHVATGHYARVQQVNG-----QWSLHRALDARKDQSYFLYRINPAWLPRLLFPVGHMQ 177

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  V   A  +GL + +  +SQ+ICFV  G Y   +++        G  V ++G++LG+H
Sbjct: 178 KCDVWQEAESLGLPVEELKESQEICFVSHGDYRTFIEQEMPEAKKPGSFVGVDGEVLGQH 237

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            GI  YT GQRRGLG+A+G+ L+V  +   S +V++   + L      + +++     L 
Sbjct: 238 AGIAFYTPGQRRGLGIAVGQRLYVQKVVPESGQVVLCAEDQLVQSECQVADLSLFDHALG 297

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              VV      VK+R +  P    +  ++   + V F + +  ++ GQ+ VFY  D    
Sbjct: 298 RQPVVAD----VKVRYATPPCQATLLPSEIGTLQVRFHQPQRALSPGQSAVFYDGD---- 349

Query: 376 RVLGGGIISGS 386
           RVLGGGII  S
Sbjct: 350 RVLGGGIIQRS 360


>gi|300781387|ref|ZP_07091241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300533094|gb|EFK54155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 361

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 192/371 (51%), Gaps = 20/371 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA L   G+DV+GV L L      ++     CC+ +D  DARRVCD + +
Sbjct: 1   MSGGVDSSVAAARLVDAGHDVVGVHLALSKDAHQTRESARGCCSLEDSADARRVCDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL    QLG D +ATGH
Sbjct: 61  PFYVWDFSDRFKEDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERAVQLGFDAIATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y         DG     + R +D ++DQSY L   T+ +L    FP+GD +K  +R+ A 
Sbjct: 121 YALI------DGAG--NLRRSIDPQKDQSYVLGVMTRDELDRCIFPVGDTEKPQIREEAA 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
             G   A K DS DICF+  G     + R        G IV  +G  L  H+G   YTIG
Sbjct: 173 AYGFSTASKPDSYDICFIPDGNTQAFLGRSIG--MRPGMIVDESGAELKEHDGAFQYTIG 230

Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL-FEDAV 320
           QR+GL +    A G+P +V  +D  +  V VGPR +L+V  I+   +  L + +      
Sbjct: 231 QRKGLNIRVPAADGKPRYVTDIDAATGTVTVGPRAALDVRTIHADRLKILHEAMSAASQC 290

Query: 321 VDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSNEAR 376
            D     V+IR+    V     V  + D + ++  +   GVA GQA V Y    D     
Sbjct: 291 SDPIAAHVQIRAHGGVVSCTAHVDLDADTMTLELAEPLSGVARGQAAVLYLPDPDGQGDV 350

Query: 377 VLGGGIISGSK 387
           VLG G I G++
Sbjct: 351 VLGSGTICGTE 361


>gi|149276507|ref|ZP_01882651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter sp. BAL39]
 gi|149233027|gb|EDM38402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter sp. BAL39]
          Length = 353

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 191/362 (52%), Gaps = 17/362 (4%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDSSV A +L   GY+VIG+T++ ++  +  +S ++  CC+   + DAR +     
Sbjct: 1   MSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDARTLAVNYG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
             HY+ D  + F + VI  F   Y AG TP PCV CN  +K+  LL    +L  + +ATG
Sbjct: 61  FPHYILDIRDEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKLDCEFIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY   R +       R ++ + +D  +DQSY L+  +Q+ L   +FPLG   K  +R +A
Sbjct: 121 HYANVRQHD----NGRHVISKGLDENKDQSYVLWGVSQENLARTKFPLGSFAKSEIRQMA 176

Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGII 260
            +MG  ++A KS+S +ICFV    Y   ++     +      G+ +  +G ++G+H G  
Sbjct: 177 LDMGQEELAKKSESYEICFVPDNDYRSFLRHKVGDLEERVAGGNFITSDGMVVGQHKGYP 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+A GEP+FV  +   S+ V++G  + LE     +R +N +      + +
Sbjct: 237 FYTIGQRKGLGIAFGEPMFVTKILPESNTVMLGRADELERGEALVRNLNLIKYENILNPM 296

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            D      KIR         + +  D + V F+ +   +A GQ+ VFY  +     +LGG
Sbjct: 297 DD---VITKIRYKDAGTLSTIVQEKDKMRVVFDHAVSAIAPGQSAVFYEGND----LLGG 349

Query: 381 GI 382
           G 
Sbjct: 350 GF 351


>gi|197294784|ref|YP_001799325.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma
           australiense]
 gi|226704773|sp|B1VAX7|MNMA_PHYAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171854111|emb|CAM12100.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Candidatus Phytoplasma australiense]
          Length = 375

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 180/382 (47%), Gaps = 32/382 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVY 74
            +VVV +SGGVDS+V A LLK+ GY+V  V ++ ++S+     +G+      C    D  
Sbjct: 2   KKVVVGLSGGVDSAVSALLLKKAGYEVEAVFMRNWDSQLNFDFQGNPTLNDVCPQELDYK 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           DA +V   + +  +  ++ E +   V + F +++    TP P + CN  +KF   ++   
Sbjct: 62  DALKVSLQLGIKLHRVNFIEEYWQKVFLYFINAFKNNLTPNPDILCNNEIKFKAFINYAT 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L    +A GHY R       D  ++  +  P+D  +DQ+YFL      QL ++ FPL 
Sbjct: 122 SKLKPQYIAMGHYARLIY----DKNQKVSLACPLDKNKDQTYFLSQLKTSQLKNILFPLA 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D+ K+ VR +A E GL  A K DS  ICF+ +  +F  +       A +G I  L+G  L
Sbjct: 178 DLTKKEVRKIALENGLINACKKDSTGICFIGERNFFQFLNNYLP--AQKGSIKRLDGTFL 235

Query: 254 GRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306
             H G+I+YTIGQR+ LG+       EP FVV  +  ++ + V        L   R  + 
Sbjct: 236 TYHKGVIHYTIGQRKNLGLGNFSSGQEPFFVVGKNLKTNTLYVEPNSQHPHLYSDRALII 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365
           ++ W G+           +   K+R  Q    V +   D + + + + +    V  GQ C
Sbjct: 296 DVTWRGEKTKT-------QIQAKMRYRQPNQKVTLNWLDANTLEILYPQKIKAVTPGQIC 348

Query: 366 VFYTSDSNEARVLGGGIISGSK 387
            FY  D      LG G+I    
Sbjct: 349 AFYDDDI----CLGAGVIKEVY 366


>gi|78212421|ref|YP_381200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9605]
 gi|123578503|sp|Q3AL87|MNMA_SYNSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78196880|gb|ABB34645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9605]
          Length = 383

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 198/397 (49%), Gaps = 33/397 (8%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
             + A       L + P + RV + +SGGVDSS+ AALL   G++V G+TL L +     
Sbjct: 6   TTTRAGEAALERLRQWPGEHRVAIGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS----- 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             KG+CC  + + DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CN
Sbjct: 61  -GKGACC-AEGLVDAAGICEQLGIPHHVVDMRETFQQEIVQRLVDGYRDGITPLPCSQCN 118

Query: 122 RTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           R+VKF  +L    ++     +ATGHY R R       + R  + R +D  +DQSYFL+  
Sbjct: 119 RSVKFGPMLDWALQERKLPRIATGHYARIRHGGD---RGRHQLLRGLDTRKDQSYFLYDL 175

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI 239
            Q+ L  + FPLG++ K   R  A   GL  A+K +SQD+C     G     +       
Sbjct: 176 PQEVLGRIVFPLGELTKPDTRLEAARHGLRTAEKPESQDLCLADHHGSMRAFLDAYLP-- 233

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
             +G+IV  +G ++G H+GI ++T+GQR+GLGVA GEPL V+ LD   +RV+V PR    
Sbjct: 234 PRQGEIVLADGTVVGEHDGIEHFTVGQRKGLGVAWGEPLHVIRLDAAMNRVVVAPRAEAG 293

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGV 348
                +  +NW+      D +       V++R    PV   +                  
Sbjct: 294 RDSCVVGAVNWVSI----DPIEAPRTVEVQVRYRSTPVRAELSPLPAIEADQQRERPHRC 349

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            + FE+ +  +  GQA VFY  ++    VLGGG+I  
Sbjct: 350 RLSFEEEQFSITPGQAAVFYDGET----VLGGGLIQR 382


>gi|33866156|ref|NP_897715.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. WH 8102]
 gi|81572928|sp|Q7TTU4|MNMA_SYNPX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33639131|emb|CAE08137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8102]
          Length = 396

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/394 (33%), Positives = 199/394 (50%), Gaps = 33/394 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CC  + +
Sbjct: 23  LRTWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS------GKGACC-AEGL 75

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D  + F+  ++      Y  G TPLPC  CNR+VKF  +L   
Sbjct: 76  VDAAGICEQLGIPHHVVDTRDTFQREIVQRLVDGYREGITPLPCSQCNRSVKFGPMLDWA 135

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G   +ATGHY R R + G+ G  R  + R +D  +DQSYFL+   Q+ L  + FPL
Sbjct: 136 AEERGLPRIATGHYARIR-HGGEQG--RHQLLRGLDSRKDQSYFLYDLPQEVLGRIVFPL 192

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251
           G++ K   R  A   GL  A+K +SQD+C     G     +         +G+IV  +G 
Sbjct: 193 GELTKADTRGEAARHGLRTAEKPESQDLCLADHHGSMRAFLDAYLP--PRQGEIVLSDGT 250

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+GI ++TIGQR+GLGVA  EPL V+ LD   ++V+V PR         +  INW+
Sbjct: 251 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDPAMNQVVVAPRAEAGQRSCVVGAINWV 310

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360
                +       +  V++R   +PV   +                   + F   +  + 
Sbjct: 311 SIAPLQQP----LELEVQVRYRSEPVAAQLTPIPHTPEDEARQRPHRCRLQFLDDQFSIT 366

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
            GQA VFY  ++    VLGGG+I    ++    E
Sbjct: 367 PGQAAVFYRGET----VLGGGLIQRDDQAQTNRE 396


>gi|227503892|ref|ZP_03933941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium striatum ATCC 6940]
 gi|227199515|gb|EEI79563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium striatum ATCC 6940]
          Length = 355

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/369 (38%), Positives = 191/369 (51%), Gaps = 24/369 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA     G+DV+GV L L+   + ++ K   CC+ +D  DARR+CD + +
Sbjct: 1   MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ E+F+  VI  F  SYA GETP PC+ CN  +KF  LL     LG D +ATGH
Sbjct: 61  PFYVWDFSEQFKEEVIGDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y        DD      M R  D  +DQSY L   + ++L    FP+GD  K  +R+ A 
Sbjct: 121 YATL-----DDAG---YMRRSKDENKDQSYVLGVISAEELEHCYFPIGDTPKPQIREEAA 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
             G   A K DS DICF+  G     +          G IV   GQ L +H+G  NYTIG
Sbjct: 173 RHGFSTAKKPDSYDICFIPDGNTQAFLGSRIGL--RPGMIVDQEGQELKQHDGAWNYTIG 230

Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GL +    A G P +V  +D  S  V VG RE L V  I    + +L       A+ 
Sbjct: 231 QRKGLDIKEPTADGRPRYVTDIDAASGTVTVGSREDLAVSTIQADRLKYLH-----PAMD 285

Query: 322 DGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSNEARV 377
              +C V++R+    VP    V R+ D + ++ ++   GVA GQA V Y  + D     V
Sbjct: 286 GELECEVQVRAHGSVVPCKAYVDRDGDKMTLELKEPLSGVARGQAAVLYLPSPDELGDIV 345

Query: 378 LGGGIISGS 386
           LG G I G+
Sbjct: 346 LGSGTICGT 354


>gi|289549263|ref|YP_003474251.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermocrinis albus DSM 14484]
 gi|289182880|gb|ADC90124.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermocrinis albus DSM 14484]
          Length = 349

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 193/365 (52%), Gaps = 20/365 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ V MSGGVDSSV A LLK +G++VIGVTL+ Y +   ++    CC+ QDV DA  V 
Sbjct: 1   MRIAVGMSGGVDSSVTALLLKEEGHEVIGVTLRFYKAVCNTEDLRVCCSPQDVKDAVLVS 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
             + + H   D+E+ F   VI  F   Y  G TP PC  CNR VK   L    R +   D
Sbjct: 61  QRLGIPHITLDWEKIFYERVIKYFVEGYKEGITPNPCAVCNREVKTGFLARYLRNVALID 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY+R   Y+G       ++ R  D  RDQSYF+     + +  L FPLGD  KE 
Sbjct: 121 RLATGHYVRKIQYMG-----YSLLARGKDTTRDQSYFMALVRGEDIPLLEFPLGDKTKEE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E GL  A K DSQ++CF+      + +K I      EG IV+  G+++G+H G 
Sbjct: 176 VRKIAEEKGLPTARKRDSQEVCFLMGRSPGEYMKDILGE--REGPIVY-KGKVVGKHRGY 232

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGL VA+G+P++V  +D  ++ V VG  E L    + L +IN+         
Sbjct: 233 YAYTVGQRRGLSVALGKPVYVTGIDPITNTVFVGDEEELYKDWLLLEDINFHLPMHLWSR 292

Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                   V+ R     V V  +++  +G  V  ++    +  GQ C FY  D     +L
Sbjct: 293 PA------VQTRYRSKTVEVRDIEKLPNGYKVYLKEPVRAITPGQVCAFYEGDV----LL 342

Query: 379 GGGII 383
           GGGII
Sbjct: 343 GGGII 347


>gi|237756395|ref|ZP_04584939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691446|gb|EEP60510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 352

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 209/367 (56%), Gaps = 17/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  A LLK+ GY+V+G++L+  +          CC+ +D+ DA++V 
Sbjct: 2   KKVVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCEVDTQVCCSDKDILDAKKVA 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + HYV ++++ F   VI  F   Y +G TP PC  CNR VK        + LG D 
Sbjct: 62  EFLEIPHYVINWKDIFEKKVINYFIEGYKSGLTPNPCSICNREVKTGLFAKYIKSLGFDY 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHYIR+ +  G      +++ R +D  +DQSYF+    ++ +  L FPLG++ KE V
Sbjct: 122 LATGHYIRTDIEDG-----VKVLKRGIDKNKDQSYFMALVEREVVDTLIFPLGNLTKEEV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A+E  + ++ K +S +ICF +     +  K +N     EG+IVH++G++LGRH GI 
Sbjct: 177 RKIAQENKIPVSQKEESFEICFTKGKSPEEYFKTLN-IKTNEGEIVHISGKVLGRHKGIE 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYTIGQRRGL +A  EPL+V+  D  +++++VG ++ L   ++  ++ N+L        +
Sbjct: 236 NYTIGQRRGLNIAWKEPLYVIEKDALNNKIVVGEKDYLLTDKVVAKDFNFLV------PI 289

Query: 321 VDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               K  V+ R  Q P+       + + + V FE+     A GQ    Y  D+    +LG
Sbjct: 290 EKWKKIEVQGRYKQKPIKAKEYHFDGENLTVIFEEKVPRFAPGQILAVYDGDT----LLG 345

Query: 380 GGIISGS 386
           GGIIS S
Sbjct: 346 GGIISRS 352


>gi|15827913|ref|NP_302176.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae TN]
 gi|221230390|ref|YP_002503806.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae Br4923]
 gi|3122976|sp|O33099|MNMA_MYCLE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811455|sp|B8ZS29|MNMA_MYCLB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2414533|emb|CAB16422.1| hypothetical protein MLCB637.07 [Mycobacterium leprae]
 gi|13093466|emb|CAC30660.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium leprae]
 gi|219933497|emb|CAR71802.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium leprae Br4923]
          Length = 358

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 195/371 (52%), Gaps = 22/371 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +DV DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STVSGTLRTGSRGCCSKEDVSDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L      LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQEDVIDNFVSAYARGETPNPCVQCNQRIKFSALSVRALMLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D  +DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRGKDQSYVLAVLTAQQLRHAAFPIGDTLKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL +ADK DS  ICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QVRAEAARRGLLVADKPDSHGICFIPSGNTRAFLSECIG--IRRGSVVDADGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +T+GQR+GLG+      G P +V  +D +++ V VG    L VH +  R   +    
Sbjct: 229 VHGFTVGQRKGLGIVGPGPNGRPRYVTAIDADTATVYVGDAADLGVHTLIGRAPVFTAGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A +   +C V+IR+  +     V+   D ++V   +   GVA GQ  V Y  D + 
Sbjct: 289 ----APLGPVQCVVQIRAHGETAVAVVELIGDELFVRLCEPLRGVARGQTLVLYRLDPDG 344

Query: 375 ARVLGGGIISG 385
             VLG   I+ 
Sbjct: 345 DEVLGSATIAS 355


>gi|169630437|ref|YP_001704086.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium abscessus ATCC
           19977]
 gi|229486416|sp|B1MDW3|MNMA_MYCA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169242404|emb|CAM63432.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium abscessus]
          Length = 356

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/371 (36%), Positives = 198/371 (53%), Gaps = 22/371 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDSSV AA +   G++V+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKILAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-SAAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF+  VI  F  +YA G TP PCV CN  +KF+ L      LG 
Sbjct: 60  VADMLGIPFYVWDFADRFKEDVIDDFVEAYAEGRTPNPCVKCNEKIKFAALADRAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R +     DG+    + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLQ-----DGR----LRRAVDADKDQSYVLGVLTPEQLRRAMFPVGDSPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A + GL +A+K DS DICF+  G     +          G++V  +G +L  H G
Sbjct: 171 DIRAEAEQRGLLVANKPDSHDICFIPSGDTQAFLGARIG--VRRGNVVDADGSVLATHAG 228

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+    A G P +V  +D  ++ V VG  E LE+       + W    
Sbjct: 229 VHEFTIGQRKGLGLVGPAADGRPRYVTSIDAETATVRVGTVEDLEIWEFGGEPVVWTSGR 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           +         +C V++R+    V   V+   + ++V    +  GVA GQ  V Y  D+  
Sbjct: 289 V----PGQPIECQVQVRAHGSVVDAIVEPGAERIHVRLRTALRGVAPGQTVVLYRPDAEG 344

Query: 375 ARVLGGGIISG 385
             VLG  +I+ 
Sbjct: 345 DEVLGSAVITR 355


>gi|330836254|ref|YP_004410895.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM
           17374]
 gi|329748157|gb|AEC01513.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM
           17374]
          Length = 357

 Score =  397 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 200/375 (53%), Gaps = 26/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAG----QDVYD 75
           M+++V MSGG+DSSV A LLK+ GY+VIG T+ ++      +   G+ C      +++ +
Sbjct: 1   MKILVGMSGGIDSSVAAWLLKQQGYEVIGATMSIWKEGTPYNGPAGNSCYQPETQEELAE 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            + +C  I + H V D ++ + + V+  F + Y AG TP PCV CN  +KF  L+   R+
Sbjct: 61  IQEICRKIGIPHVVVDCQDMYEDIVLKNFRAEYLAGRTPNPCVWCNSKIKFGALIDFARK 120

Query: 136 LG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            G   D  ATGHY R      D    R  + R +DL +DQ+YFL   TQ+QL  + FPLG
Sbjct: 121 SGIEFDKFATGHYARVDF---DKKTGRYRLRRAVDLHKDQTYFLHRLTQEQLSSVIFPLG 177

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           DM K+ VR +  E G     + +SQD      G Y D++      +  +G+I+   G ++
Sbjct: 178 DMLKKDVRKIDEEQGFHAVGQEESQDFY---CGDYTDLL----GVVPGKGNIIDRQGTVM 230

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G+ NYTIGQR+GLG+A   PL+VV L   S+ V+VG  E     R+ + +++W   
Sbjct: 231 GTHTGVWNYTIGQRKGLGIASDRPLYVVELRPGSNEVVVGHEEDTLHTRVVIEDLSWSAV 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-FEKSEVGVASGQACVFYTSDS 372
                A+    +C  +IRS+ +P    V   +D   V  F  +      GQ+ V Y  D+
Sbjct: 291 A----ALDTPRECVARIRSASNPQMAMVSPGEDNTLVISFTGAVKAATPGQSLVVYDGDT 346

Query: 373 NEARVLGGGIISGSK 387
               VL GGIIS ++
Sbjct: 347 ----VLCGGIISSAR 357


>gi|194334691|ref|YP_002016551.1| tRNA-specific 2-thiouridylase MnmA [Prosthecochloris aestuarii DSM
           271]
 gi|194312509|gb|ACF46904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prosthecochloris aestuarii DSM 271]
          Length = 362

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 189/378 (50%), Gaps = 25/378 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK-GSCCAGQD 72
           ++       V+V +SGGVDS+V A LL   GY V G+ ++  +    S     S     D
Sbjct: 1   MNATISPTTVIVGLSGGVDSAVAACLLIEQGYSVTGLHIRTLDDSPDSAELVASTLVVSD 60

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + R          +  +    FR  VI+ F   Y AG+TP PC  CN+ +K+  LL  
Sbjct: 61  LDEYR-------FPVFSLNLSNSFREHVIMTFQKDYLAGKTPNPCTLCNKLIKWEGLLKG 113

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +  GA+ +ATGHY R +            + + +D ++DQSYFL+   ++ L    FPL
Sbjct: 114 AQLCGAEYVATGHYARIQHSDSSC-----RLLKGVDNKKDQSYFLWMLGRKTLEKTLFPL 168

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLN 249
           G+  K  VR LAR  G+  A+K++SQ+ICFV    Y   +K    G+      GDI+   
Sbjct: 169 GEYSKPEVRQLARRFGIRAAEKTESQEICFVGDNNYRQFLKSSIPGLEQSVQGGDIIDEE 228

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G ++G H G   YTIGQR+GLG++  EPL+V  +D   +R+ VG ++ L   R+   ++N
Sbjct: 229 GSVIGHHTGYPFYTIGQRKGLGISSSEPLYVTTIDPKRNRIHVGGKQKLACSRLKAGQLN 288

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368
           W+G    E       K   +IR         +   D D + V F++ +  V  GQA VFY
Sbjct: 289 WIGIAPPERP----LKALGRIRYRDQESACTIIPLDGDRIEVLFDEPKNAVTPGQAIVFY 344

Query: 369 TSDSNEARVLGGGIISGS 386
             +     +LGGG+I+ +
Sbjct: 345 HEE----ELLGGGVITAA 358


>gi|256425783|ref|YP_003126436.1| tRNA-specific 2-thiouridylase MnmA [Chitinophaga pinensis DSM 2588]
 gi|256040691|gb|ACU64235.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Chitinophaga pinensis DSM 2588]
          Length = 366

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 194/374 (51%), Gaps = 19/374 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76
           +  +V+VAMSGG+DS+V A +L   GY+V+G+T++ ++  S  +SK++  CC      DA
Sbjct: 3   RHGKVLVAMSGGIDSTVTALMLHEQGYEVVGITMKTWDYASAGSSKKETGCCNLDSFNDA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R         H+V D  + F + VI  F   Y AG TP PCV CN  +K+  L+     +
Sbjct: 63  RAAAVHHGFPHFVLDIRDEFGDFVINNFVDEYIAGRTPNPCVLCNTHIKWRALMKRADAM 122

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               +ATGHY + R     +   R I+ + +D  +DQSY L+   Q  L     PLG  +
Sbjct: 123 DCAFIATGHYAQIR-----EQDGRHILSKGIDDLKDQSYVLWGLQQDVLARTILPLGQYR 177

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252
           K  +R +A + G   +A K++S +ICFV    Y   +KR   G+  +   G+ V  +G I
Sbjct: 178 KTEIRQMAFDFGYPELAKKAESYEICFVPDNDYRGFLKRKVDGLEEQVNGGNFVLRDGTI 237

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G   YTIGQR+GL +A+G P+FV  +   ++ V++G  + L  + + +  +N + 
Sbjct: 238 VGHHKGYPFYTIGQRKGLDIALGRPVFVTEIIPETNTVVLGNEDELNRNEMTVAGLNMI- 296

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                D + +G +   KIR         +   D  V V+F +   G+A GQ+ VFY  D 
Sbjct: 297 ---KYDHIPEGMEAITKIRYKDKGALSNLYNVDGKVKVNFYEHVKGIAPGQSAVFYEGDD 353

Query: 373 NEARVLGGGIISGS 386
               V+ GGII  +
Sbjct: 354 ----VIAGGIIQRA 363


>gi|326403958|ref|YP_004284040.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301]
 gi|325050820|dbj|BAJ81158.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301]
          Length = 345

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/364 (48%), Positives = 225/364 (61%), Gaps = 21/364 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSSVVA L+   G++VIGVTLQLY+   A+ RKG+CCAGQD++DAR V 
Sbjct: 1   MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATSRKGACCAGQDIHDARNVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++HYV D E  FR AVI  FA SYA G TP+PCV CN+ +KF DLL + R LGA+ 
Sbjct: 61  DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           LATGHY+R      +DG     + R +D  RDQS+FLFATT+ QL   RFPLG M  K++
Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  M L +A+K DSQDICFV  G Y D+V ++    A  G+IV  +G +L RH GI
Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQ + LG A G    V  +D    R++VGPR +     + + E NWL      D 
Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               F+  VK+R+ + P P  +    +   V  +   +  A GQACV Y     E+RVLG
Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARN--LVTLDTPALA-APGQACVVYR----ESRVLG 340

Query: 380 GGII 383
           GG I
Sbjct: 341 GGFI 344


>gi|229814917|ref|ZP_04445255.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM
           13280]
 gi|229809404|gb|EEP45168.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM
           13280]
          Length = 409

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 198/414 (47%), Gaps = 54/414 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+VAMSGGVDSSV A LL + GYD +G T+ L+         G+C +G D  DA  +C
Sbjct: 4   KRVLVAMSGGVDSSVTAYLLTQQGYDCLGATMLLH----GDAAPGACGSGSDADDAAAIC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +   H V D  E F   V+  F  +Y  G TP PC+DCNR +KF  LLS  R+   D 
Sbjct: 60  ARLGFPHEVIDMRETFERHVVEKFVRTYETGRTPNPCIDCNRHLKFDALLSYAREHDCDF 119

Query: 141 LATGHYIRSRLYVGDDG----------------------KRRRIMCRPMDLERDQSYFLF 178
           +ATGHY R        G                           +   +D  +DQSY L+
Sbjct: 120 IATGHYGRIGTLAEGGGGSVRRGEEQEFVARITARTGASNAVHTLSCALDPSKDQSYVLY 179

Query: 179 ATTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           + TQ++L     PLG + KE  VR +ARE G + A K DSQ ICFV    +   +++ N 
Sbjct: 180 SLTQERLARTLLPLGGLFKERDVRRIAREQGFENAGKRDSQGICFVPDNDFATYIEKRNG 239

Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
               EGDIV+ +G +LGRH+G I YT+GQR+GLGVA   P++V  +D  ++ V +G    
Sbjct: 240 APLPEGDIVNTSGHVLGRHHGAIRYTVGQRKGLGVACAHPVYVTGIDAVANTVTLGEVAD 299

Query: 298 LEVHRIYLREINW-----LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----- 347
           L    +   +  W     + + L ++A   G     KIR      P  ++R   G     
Sbjct: 300 LMASGLVADDWIWSAPANVMEELLDEAGETGLPVSAKIRYRHPAQPARLRRATCGTTGSS 359

Query: 348 -------------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
                          + F+  E G+A GQA V Y  D     VLGGG +  + +
Sbjct: 360 AGANAIAENAANAFELIFDSPERGIAPGQAVVAYAGDI----VLGGGTVVRAIK 409


>gi|160946390|ref|ZP_02093599.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270]
 gi|158447506|gb|EDP24501.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270]
          Length = 350

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 132/361 (36%), Positives = 200/361 (55%), Gaps = 11/361 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDS V   LL ++GY+VIGVT+ L         +  CC+   V DA+ V + + V 
Sbjct: 1   MSGGVDSCVACHLLLKEGYEVIGVTMNLVPKGHLYDEEKGCCSLSSVMDAKIVAEAMGVK 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HY   + E F   VI  F   Y+ G TP PCV CN+ +KF+  +   R L AD ++TGHY
Sbjct: 61  HYTMSFREEFDRKVIENFVREYSLGYTPNPCVACNKYIKFNSFVDKIRPLKADFISTGHY 120

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            +      D    R ++ R  D ++DQ+YFL+ T+Q+ L    FPL D++KE VR +A++
Sbjct: 121 AKVEF---DKNYNRYLLKRAKDSKKDQTYFLYNTSQEVLSKTLFPLADLEKEKVRQIAKD 177

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
             +    K DS++ICFVQ   +   +K+ N  +  EG  V  NG  LG+H GI+ YT+GQ
Sbjct: 178 ENILTYSKKDSEEICFVQNRDHGLFIKQRNPELIKEGYFVDENGNKLGKHKGIVYYTVGQ 237

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326
           R+GLG+A+G+ +FV  ++   + V +   ++L  ++I +RE N++      DA+    + 
Sbjct: 238 RKGLGIALGKRVFVSKINAIDNTVTLSDEDALYKNKIRIREENFI----PFDALEKPLEV 293

Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            VK+R  Q      +   ++ ++V+FEK       GQ+ VFY  D     V+GGGII   
Sbjct: 294 SVKVRHGQSETKGLLFYKNNDLFVEFEKQVRAPNKGQSAVFYLDDI----VVGGGIIDEV 349

Query: 387 K 387
            
Sbjct: 350 Y 350


>gi|47459275|ref|YP_016137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mobile 163K]
 gi|81614195|sp|Q6KHK4|MNMA_MYCMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|47458604|gb|AAT27926.1| tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate)
           [Mycoplasma mobile 163K]
          Length = 370

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 178/380 (46%), Gaps = 35/380 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
           ++VVA+SGGVDSSV A +LK +  ++VI V ++ ++S   +   G+       C   +D 
Sbjct: 3   KIVVALSGGVDSSVTAFILKYQQNHEVIAVFMRNWDSFANNDILGNEDINQDICPQEKDW 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+++   +N+  Y  D+ + + + V       Y  G TP P + CN+ +KF   +   
Sbjct: 63  EDAKKIASQLNIPIYRVDFVKEYYDEVFTYLIEEYRQGRTPNPDIFCNKYIKFGKFIEYV 122

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +    D +ATGHY +    +         + R  D  +DQSYFL   +  QL  + FPL
Sbjct: 123 EKNFNPDFIATGHYAKVENSL---------LYRAKDRNKDQSYFLSQLSSDQLKKIIFPL 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
            D+ K+ +R +A E  L  A K DS  ICF+ +  +   ++       + G+IV +   +
Sbjct: 174 KDLTKDVIRKIAAENNLVTAQKKDSTGICFIGERNFDKFLQNYIPN--MPGNIVDIETNE 231

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREI 308
           ++G+H G++ YT+GQR+     M  P +V   D  +  + V    S   L+  ++   E 
Sbjct: 232 VVGQHVGVMYYTLGQRKINLSGMKYPYYVAGHDLKNKILYVASIHSKNYLKSDKLEAIEF 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367
           N +          +      K R  Q+ + +  +  + + + + +      V  GQ  V 
Sbjct: 292 NLINKNF------NKKNLTAKFRYRQEDIKIEILNIDKNKIEISYPDEFEAVTPGQHVVI 345

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  +S     +GGGII+ + 
Sbjct: 346 YDGES----CVGGGIINKTY 361


>gi|260435745|ref|ZP_05789715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8109]
 gi|260413619|gb|EEX06915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8109]
          Length = 383

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 197/385 (51%), Gaps = 33/385 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L + P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC  + +
Sbjct: 18  LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMS------GKGACC-AEGL 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CNR+VKF  +L   
Sbjct: 71  VDAAGICEQLGIPHHVVDTRETFQQEIVQRLVDGYRDGITPLPCSQCNRSVKFGPMLDWA 130

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +ATGHY R R + GD G  R  + R +D  +DQSYFL+   Q+ L  + FPL
Sbjct: 131 LKERKLLRIATGHYARIR-HDGDQG--RHQLLRGLDTRKDQSYFLYDLPQEVLGRIVFPL 187

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251
           G++ K   R  A   GL  A+K +SQD+C     G     +         +G+IV  +G 
Sbjct: 188 GELTKPDTRLEAALHGLRTAEKPESQDLCLADHHGSMRAFLDAYLP--PRQGEIVLSDGT 245

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+GI ++TIGQR+GLGVA  EPL V+ LD   +RV+V PR         +  +NW+
Sbjct: 246 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDAAMNRVVVAPRAEAGRDSCVVGAVNWV 305

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360
                 D +       V++R    PV   +                   + F++ +  + 
Sbjct: 306 SI----DPIEAPRTVEVQVRYRSTPVHAQLSPLPPTDADQQQERPHRCRLSFDEEQFSIT 361

Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385
            GQA VFY  D+    VLGGG+I  
Sbjct: 362 PGQAAVFYDGDT----VLGGGLIQR 382


>gi|193216582|ref|YP_001999824.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma arthritidis 158L3-1]
 gi|229486415|sp|B3PM68|MNMA_MYCA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|193001905|gb|ACF07120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma arthritidis 158L3-1]
          Length = 370

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 183/377 (48%), Gaps = 36/377 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S   +   G+       C   QD 
Sbjct: 3   KRVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  Y  D+ + + + V       Y  G TP P + CN+ +KF+    V 
Sbjct: 63  ADAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFCNKYIKFNFFAQVA 122

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +  AD +A GHY        ++G+    + +  D  +DQSYFL   + +QL  + FPL
Sbjct: 123 FSKYQADFIAMGHYAYC-----ENGE----LFKAKDDSKDQSYFLAQLSNEQLKKVIFPL 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
            ++ K+ VR++A+ + L  A K DS  ICF+ + K+   ++      A  G I+ +   Q
Sbjct: 174 ANLTKQEVREIAKNLNLATATKKDSTGICFIGERKFTKFLENYIP--AQPGKIIDIATKQ 231

Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLRE 307
           ++G H G + YTIGQR+GL +    +P FVV  +     + V      E L   ++    
Sbjct: 232 VVGSHIGTMYYTIGQRKGLNLGGFSKPYFVVGHNLEKKVLYVANEDFPEYLLSDKLIAIG 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366
            N +          D      K R  Q  +P+ ++   +  + V +  +E  V  GQ  V
Sbjct: 292 FNQIAYKF------DTNNLSAKFRYRQKDIPIKLKLLANSEIEVSYNDTE-AVTPGQEIV 344

Query: 367 FYTSDSNEARVLGGGII 383
            Y  +    +V+GG II
Sbjct: 345 IYDGN----KVVGGAII 357


>gi|148260759|ref|YP_001234886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidiphilium cryptum JF-5]
 gi|205811039|sp|A5FZD5|MNMA_ACICJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146402440|gb|ABQ30967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidiphilium cryptum JF-5]
          Length = 345

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/364 (48%), Positives = 225/364 (61%), Gaps = 21/364 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVVVAMSGGVDSSVVA L+   G++VIGVTLQLY+   A+ RKG+CCAGQD++DAR V 
Sbjct: 1   MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATGRKGACCAGQDIHDARNVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++HYV D E  FR AVI  FA SYA G TP+PCV CN+ +KF DLL + R LGA+ 
Sbjct: 61  DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           LATGHY+R      +DG     + R +D  RDQS+FLFATT+ QL   RFPLG M  K++
Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  M L +A+K DSQDICFV  G Y D+V ++    A  G+IV  +G +L RH GI
Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQ + LG A G    V  +D    R++VGPR +     + + E NWL      D 
Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               F+  VK+R+ + P P  +    +   V  +   +  A GQACV Y     E+RVLG
Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARN--LVTLDTPALA-APGQACVVYR----ESRVLG 340

Query: 380 GGII 383
           GG I
Sbjct: 341 GGFI 344


>gi|145219199|ref|YP_001129908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prosthecochloris vibrioformis DSM 265]
 gi|205816888|sp|A4SD47|MNMA_PROVI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145205363|gb|ABP36406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 357

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 193/374 (51%), Gaps = 25/374 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDA 76
            ++  V+V +SGGVDS+V A +L  +GY VIG+ +++ +S +++   + S     +  + 
Sbjct: 2   KQETTVLVGISGGVDSAVAACMLVDEGYRVIGLNIKVLDSPESNPALQPSSLVISNREEF 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R       +  Y  +  +RFR  VI  F   Y A  TP PC+ CN+ +K++ LL     L
Sbjct: 62  R-------IPVYTLNLSKRFREDVIGYFQEEYLAARTPNPCIVCNKKIKWAGLLEAADML 114

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD++ATGHY  +    G     R  + +  D ++DQSYFL+   Q++L     PLG + 
Sbjct: 115 NADLVATGHYASTAFLGG-----RCRLYQGADKKKDQSYFLWMLQQKELLKTILPLGTLA 169

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQIL 253
           K  VR+LAR  G+  A+K +SQ+ICFV    Y   +++    +A     G++V  +G+++
Sbjct: 170 KPEVRELARSYGVPAAEKKESQEICFVPGDDYCRYLEQAIPDLAERVRGGELVDASGRVI 229

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   YTIGQRRGLG + GEP++V  +D   +R+  G +  L    +    +NW+G 
Sbjct: 230 GHHRGYPFYTIGQRRGLGASTGEPIYVTSIDPVHNRIHTGKKTDLLSRELTASGMNWIGI 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +     F+   +IR    P P  V    D+   + F   +  +  GQA V Y  D 
Sbjct: 290 ----EPPKKPFEATARIRYRDAPTPCRVTPLEDNRATISFHSPKSAITRGQAAVIYRDD- 344

Query: 373 NEARVLGGGIISGS 386
               VLGGG I  +
Sbjct: 345 ---EVLGGGSIVET 355


>gi|296192066|ref|XP_002743906.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1
           [Callithrix jacchus]
          Length = 421

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/388 (29%), Positives = 180/388 (46%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LLKR GY V GV ++ ++        G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLKRRGYQVTGVFMKNWD---LLDEHGVCAADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++      Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDLPFRQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFRYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+    G+  +++ I                  + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSQEDGEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + K+ V+ +A E  L  +  K +S  +CF+ +  +   + +     + 
Sbjct: 183 DALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLP--SR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  +  P +VV  D     V V P     +
Sbjct: 241 PGQFISIEDHKVLGTHKGWFLYTLGQRANIG-GLRAPWYVVEKDSAKGDVFVAPRLDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V   ++
Sbjct: 300 LYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +A+GQ  VFY         LG G I
Sbjct: 360 VHALATGQFAVFYKG----GECLGSGKI 383


>gi|113474569|ref|YP_720630.1| tRNA-specific 2-thiouridylase MnmA [Trichodesmium erythraeum
           IMS101]
 gi|123352667|sp|Q118B7|MNMA_TRIEI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110165617|gb|ABG50157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Trichodesmium erythraeum IMS101]
          Length = 359

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/374 (37%), Positives = 207/374 (55%), Gaps = 31/374 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V +SGGVDSS  AA+L   GY V G+TL L       K KG CC+   V DA  +C+
Sbjct: 3   KIIVGLSGGVDSSTAAAILHHQGYQVEGLTLWLM------KGKGQCCSEGMV-DAAYICE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +++ H++ D    F+  ++    + Y+AG TPLPC  CN+TVKF  +L+  R+ LG D 
Sbjct: 56  QLDIPHHIVDTRNLFQANIVDYLVTGYSAGITPLPCSQCNKTVKFGPMLAYGREKLGIDK 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       D   R ++ R +D  +DQSYFL+  TQ  L    FPLG+M K   
Sbjct: 116 IATGHYARLDYDSKSD---RYLLKRAIDRNKDQSYFLYDLTQYLLAGSVFPLGEMVKSET 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           R +A E GL  ADK +SQD+C V+  G     + +       +G+IV   G++LGRH+G+
Sbjct: 173 RRIAAEYGLKTADKPESQDLCLVESSGSMRAFLDKYI--TPHQGEIVDREGRVLGRHDGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQR+GLGV+   PL+V+ LD   ++VIVG R+S       ++ +NW+        
Sbjct: 231 HHYTIGQRKGLGVSAPHPLYVIDLDPAMNKVIVGDRDSATKMESTVKLVNWVSIA----P 286

Query: 320 VVDGFKCFVKIRSSQDPVPVFV-------QRNDDGVYV--DFEKSEVGVASGQACVFYTS 370
                +  V++R    PV   +       ++  DG  V   FE++  G+  GQA V+Y  
Sbjct: 287 PSTSIRAEVQVRYRSLPVAANIIPLGVNEEKPQDGFRVKLIFEEAVFGITPGQAAVWYEG 346

Query: 371 DSNEARVLGGGIIS 384
           D     +LGGGII 
Sbjct: 347 DI----LLGGGIIE 356


>gi|78188235|ref|YP_378573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium chlorochromatii CaD3]
 gi|123580466|sp|Q3ATZ5|MNMA_CHLCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78170434|gb|ABB27530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium chlorochromatii CaD3]
          Length = 359

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 188/371 (50%), Gaps = 24/371 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              ++V +SGGVDS+V   LL + GY V  V L+L ++  A   + +      V     V
Sbjct: 4   PHHILVGISGGVDSAVATCLLVQQGYRVTAVNLRLLDTLDAPYAEPTLQPSSLV-----V 58

Query: 80  CDT--INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            D    ++  +  +    FR+ V+  F + Y AG TP PC+ CNR VK++ L      +G
Sbjct: 59  SDHPDYHIPLFSLNLSRTFRDEVMRYFNAEYLAGRTPNPCMVCNRQVKWAGLRHAAELIG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +ATGHY       G     R  + +  D ++DQSYFL+  +Q+ L     PLG + K
Sbjct: 119 ANAIATGHYANRAFSDG-----RYRLYKGADSQKDQSYFLWMLSQKDLAHTLLPLGGLTK 173

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254
             VR+LA+  G+  A+K +SQ+ICFV    Y   +      +A    +GDIV   G ++G
Sbjct: 174 PEVRELAKNFGVRAAEKKESQEICFVPNDDYSTYLMSAMPELAERVADGDIVDAAGTVIG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQRRGLGV+  EPL+V  LD   +R+ VG + +L  HR+     NW+G  
Sbjct: 234 KHRGYPFYTIGQRRGLGVSAKEPLYVTALDAEQNRIHVGHKAALMSHRLLASRCNWIGM- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              +      +   +IR         V   ++G + V F++ +  +  GQA VFY  D  
Sbjct: 293 ---EPPSSSVELLGRIRYRDRQTACRVTPLENGQIEVVFQEPKSAITPGQAVVFYCGD-- 347

Query: 374 EARVLGGGIIS 384
              VLGGG I 
Sbjct: 348 --EVLGGGFIE 356


>gi|189485341|ref|YP_001956282.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|205828982|sp|B1GZY9|MNMA_UNCTG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170287300|dbj|BAG13821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 360

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 204/375 (54%), Gaps = 30/375 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSC--CAGQDVY 74
           +M++++ +SGGVDS+V A LLK+ GY+V G T+ ++++      +K   SC     +++ 
Sbjct: 4   EMKILIGLSGGVDSAVAAYLLKKQGYEVTGTTMSIWDNFLPAPKTKVNDSCLGPENENIE 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A ++ D + +  YV D    ++  V+  F + Y  G TP PC+ CN  +KF  L +  +
Sbjct: 64  TAHKIADFLTIPLYVTDCSGEYKKVVLENFRNEYKEGRTPNPCIRCNAYIKFGILPAAVK 123

Query: 135 QLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + G   D  ATGHY        D       + +  DL +DQ+YFL+  TQ+ L +  FPL
Sbjct: 124 KTGLSFDKFATGHYANIGF---DSSTNMYKLYKAADLNKDQTYFLYRLTQKTLSETIFPL 180

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G   KE VR++A+++GL  A+K DSQD  C    G Y D+++      A  G+IV  NG+
Sbjct: 181 GIYTKEQVRNIAKKIGLPSAEKPDSQDFYC----GDYNDILQF----PANPGNIVDKNGR 232

Query: 252 ILGRHNGIINYTIGQRRGLG--VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +LG+HNGI NYTIG+R+GLG      +PL+V+ +    + V +G +E L    +  ++++
Sbjct: 233 VLGKHNGIWNYTIGKRKGLGLLGGTKDPLYVINISAKQNMVTIGTKEDLYSSSLTAKKVS 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           W              +   KIR    P   F+   +D  V V+F + ++ V +GQ+ VFY
Sbjct: 293 WCSIL----PPKKTIEATAKIRRQHKPEKAFIIPQEDSSVKVEFAQPQMSVTAGQSIVFY 348

Query: 369 TSDSNEARVLGGGII 383
             D+    VLGGG+I
Sbjct: 349 KDDT----VLGGGVI 359


>gi|254431220|ref|ZP_05044923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanobium sp. PCC 7001]
 gi|197625673|gb|EDY38232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanobium sp. PCC 7001]
          Length = 399

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 204/392 (52%), Gaps = 37/392 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G++V G+TL L +       KG+CC  + +
Sbjct: 25  LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS------GKGACC-AEGL 77

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + V H+V D+ + FR  ++      YAAG TPLPC  CNR VKF+ +L+  
Sbjct: 78  VDAAGICEQLGVPHHVVDFRDHFRAQIVDFLVDGYAAGVTPLPCSRCNREVKFAPMLAWA 137

Query: 134 RQ-LGADVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           R+  G + LATGHY R R       L V  DG+ R  + R +D  +DQSYFL+   Q+ L
Sbjct: 138 REQRGLERLATGHYARVRRADAADPLPVPGDGRGRHQLLRGLDARKDQSYFLYDLPQEVL 197

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGD 244
             L FPLG++ K   R  A   GL  A K +SQD+C     G     +         +G+
Sbjct: 198 GRLVFPLGELTKPDTRQEAERHGLRTAHKPESQDLCLADHHGSMRAFLDAHLP--PRDGE 255

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV  +G+++GRH+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR         
Sbjct: 256 IVLQDGRVVGRHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAFNRVVVAPRREAARGDCV 315

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFE 353
           +  +NW+       A     +  V++R    P    +                 V ++F 
Sbjct: 316 VGAVNWVSMA----APDAPLEVMVQVRYRSAPEWALLTPLPATEVDQAAQRPHRVRLEFA 371

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + +  +  GQA VFY  +     +LGGG+I  
Sbjct: 372 EEQFSITPGQAAVFYAGEV----LLGGGLIQA 399


>gi|227501721|ref|ZP_03931770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49725]
 gi|227077746|gb|EEI15709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49725]
          Length = 355

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 190/369 (51%), Gaps = 24/369 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA     G+DV+GV L L+   + ++ K   CC+ +D  DARR+CD + +
Sbjct: 1   MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ E F+  VI  F  SY+ GETP PC+ CN  +KF  LL     LG D +ATGH
Sbjct: 61  PFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y      + DDG     M R  D  +DQSY L   + ++L    FP+GD  K  +R+ A 
Sbjct: 121 YAT----LDDDG----YMRRSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQIREEAA 172

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
             G   A K DS DICF+  G     +          G IV   G  L  H+G  NYTIG
Sbjct: 173 AHGFSTAKKPDSYDICFIPDGNTQQFLGSRIGL--RPGMIVDQEGTELKEHDGAWNYTIG 230

Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GL +    A G P +V  +D  +  V VG RE L V  I    + +L  G+  D   
Sbjct: 231 QRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPGMDGD--- 287

Query: 322 DGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSNEARV 377
             F+C V++R+    VP    V R  D + ++ ++   GVA GQA V Y  + D     V
Sbjct: 288 --FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSPDDLGDIV 345

Query: 378 LGGGIISGS 386
           +G G I  +
Sbjct: 346 IGSGTICET 354


>gi|311898474|dbj|BAJ30882.1| putative tRNA-specific 2-thiouridylase MnmA [Kitasatospora setae
           KM-6054]
          Length = 377

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/377 (37%), Positives = 189/377 (50%), Gaps = 22/377 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA     G++V GV L L  S   S R G   CC  +D  DARR 
Sbjct: 17  RVLAAMSGGVDSAVAAARAVEAGHEVTGVHLAL-ASNPQSFRTGARGCCTLEDSRDARRA 75

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  YV+D  ERFR  VI  F + YAAG TP PC+ CN  +KF+ LL     LG D
Sbjct: 76  ADVIGIPFYVWDLAERFREDVIDDFVAEYAAGRTPNPCLRCNEKIKFAALLDKAVALGFD 135

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R    + D     R + R  D  +DQSY L      QL    FPLGD  K+ 
Sbjct: 136 AVCTGHYAR----IVDHPDGTRELHRAADAAKDQSYVLGVLDADQLAHSLFPLGDTTKDV 191

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R  A   GL +A K DS DICF+  G     +          GDI+  +G  LG H+G 
Sbjct: 192 IRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAERLGTA--PGDILDADGTKLGEHDGA 249

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +TIGQR+GL +      G+P +V+ +    + V VGP E L+VH +      W G   
Sbjct: 250 YGFTIGQRKGLRLGRPAADGKPRYVLDISPVDNTVTVGPVEGLDVHALTAIRPRWCG--- 306

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    +   ++R+  + VPV     +D ++V  +    G+A GQA V Y       
Sbjct: 307 --TPAAGEGRYTAQLRAHGEEVPVTAVLGEDELHVRLDTPARGIAPGQAVVLYDG----T 360

Query: 376 RVLGGGIISGSKRSDAV 392
           RV+G   I+ ++R+  V
Sbjct: 361 RVVGSATIASTERAVGV 377


>gi|254820453|ref|ZP_05225454.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 358

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 196/374 (52%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSSPGTLRSGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KFS L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFQADVIDEFVSSYARGETPNPCVVCNQKIKFSALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   + +QL    FP+GD  K 
Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDHDKDQSYVLAVLSAEQLRHAAFPIGDTPKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +A+K DS DICF+  G     +          G +V+ +G +L  H+G
Sbjct: 171 QIRAEAARRGLAVAEKPDSHDICFIPSGDTRAFLGSRIG--VRRGAVVNADGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G P +V  +D  ++ V VG    LEV  +  R   +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDAETATVRVGDVAELEVRELTGRAPVFTSGV 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                +    +C V++R+  +      +     + V       GVA GQ  V Y  D + 
Sbjct: 289 TPSGPI----ECAVQVRAHGETADAVAELVGGELVVRLRVPLRGVAPGQTLVLYRPDPDG 344

Query: 375 ARVLGGGIISGSKR 388
             V+G  +I+ + R
Sbjct: 345 DEVIGSAVIAATSR 358


>gi|225848332|ref|YP_002728495.1| tRNA-specific 2-thiouridylase MnmA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644575|gb|ACN99625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 351

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/365 (36%), Positives = 204/365 (55%), Gaps = 18/365 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV +SGGVDSS  A +LK+ GY VIG+TL+L    + S  K  CC+ +D+ DA++V 
Sbjct: 2   KKVVVGLSGGVDSSTAAFILKQQGYQVIGITLKLSEVDQCSLDKQVCCSTKDILDAKKVA 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
             + + HYV D+++ F+  VI  F   Y +G TP PC  CNR VK   L    ++ L AD
Sbjct: 62  SFLGIPHYVIDWQDIFKEKVIDYFIREYQSGYTPNPCSICNREVKTGLLAKYAKKVLKAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHYI++    G+     +++ R +D  +DQSYF+    ++ +  L FPLGD  KE 
Sbjct: 122 FFATGHYIKTDFLDGE-----KVIKRGVDTSKDQSYFMALVEKEVIDMLIFPLGDFTKEE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A E  + ++ KS+S +ICF   GK  +   +        GDIVH++G++LG+H G+
Sbjct: 177 VRKIAYENKIPVSQKSESFEICF-TAGKTPEEYFKSLGIPLKIGDIVHVSGKVLGKHKGL 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GLG+   EPL+V+  D   + +IVG +E L    +  +  N+L        
Sbjct: 236 EAYTIGQRKGLGIRWKEPLYVIDKDPIKNTIIVGEKEHLLTDTVVAKNFNFLV------P 289

Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +       V+ R  Q P+ V     + + + + F++ +  +A GQ    Y  D+    +L
Sbjct: 290 IEKWKNIQVQGRYRQKPIEVRDFHYDGELLKITFKEKQQKMAPGQILAVYQDDT----LL 345

Query: 379 GGGII 383
           GGG+I
Sbjct: 346 GGGVI 350


>gi|39938611|ref|NP_950377.1| tRNA-specific 2-thiouridylase MnmA [Onion yellows phytoplasma OY-M]
 gi|81565131|sp|Q6YR90|MNMA_ONYPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|39721720|dbj|BAD04210.1| tRNA(5-methylaminomethyl-2-thiouridylate) [Onion yellows
           phytoplasma OY-M]
          Length = 378

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 172/381 (45%), Gaps = 27/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVY 74
            +VVV +SGGVDS+V A LLK+ GY V  V ++ ++S      +G+      C    D  
Sbjct: 2   TKVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICSQELDYK 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D+ +V + + +  +  D+ E +   V + F  ++    TP P + CN  +KF   +    
Sbjct: 62  DSLKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYAT 121

Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L    +A GHY         D K    +   +D  +DQ+YFL   T +QL ++ FPLG
Sbjct: 122 TKLAPQYIAMGHYANIIYETSSDQKLVPRLACAVDQNKDQTYFLSQLTTKQLQNILFPLG 181

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K+ VR +A E  L  A K DS  ICF+ +  +F  +       A +GDI  L+G  L
Sbjct: 182 NLTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLSNYLP--AQKGDIKTLDGTFL 239

Query: 254 GRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307
             H G++ YTIGQR+ LG+      +P FVV     ++ + V        L   +  + +
Sbjct: 240 AHHKGVMYYTIGQRKNLGLGDVPSQKPWFVVGKHLPTNTLYVEQGSTHPYLYSDKALIGD 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
           I W                  K+R  Q    V +   + + + + + ++   V  GQ C 
Sbjct: 300 IVW-------RGKKTNLHLQAKMRYRQPNQDVILTWLDQNNLEIHYPQTIKAVTPGQICA 352

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY  +       G G+I    
Sbjct: 353 FYDKNI----CCGAGVIKEVY 369


>gi|78185088|ref|YP_377523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9902]
 gi|123580788|sp|Q3AV73|MNMA_SYNS9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78169382|gb|ABB26479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9902]
          Length = 389

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 207/393 (52%), Gaps = 33/393 (8%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            ++EA       L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +     
Sbjct: 6   TMTEAGEAALGRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS----- 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             KG+CC  + + DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CN
Sbjct: 61  -GKGACC-AEGLVDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCN 118

Query: 122 RTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           R+VKF  +L    ++     +ATGHY R R + GD G  R  + R +D  +DQSYFL+  
Sbjct: 119 RSVKFGPMLEWAAQERNLPRIATGHYARIR-HGGDCG--RHQLLRGLDSRKDQSYFLYDL 175

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI 239
            Q+ L  + FPLG++ K   R  A   GL  A+K +SQD+C     G     +       
Sbjct: 176 PQEALGRIVFPLGELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLP-- 233

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
             +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR    
Sbjct: 234 PRQGEIVLKDGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRAEAG 293

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDD-------GV 348
            H   +  INW+      D  +      V++R    PV   +      +DD         
Sbjct: 294 RHEAVVGAINWVSI----DPPLQAMNLEVQVRYRSAPVTARLTPLPATDDDHQRQRPHRC 349

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           ++ F++ +  +A GQA VFY+ D+    VLGGG
Sbjct: 350 HLVFDEDQFSIAPGQAAVFYSDDT----VLGGG 378


>gi|87125503|ref|ZP_01081348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9917]
 gi|86166803|gb|EAQ68065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9917]
          Length = 583

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/394 (34%), Positives = 198/394 (50%), Gaps = 31/394 (7%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           V+EA      +L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +      
Sbjct: 194 VTEAGHQALANLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMS------ 247

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            KG+CC  + + DA  +CD + + H+V D+   F+  ++      Y  G TPLPC  CNR
Sbjct: 248 GKGACC-AEGLVDAAGICDQLGIPHHVVDFRAHFKEQIVDFLVQGYGEGITPLPCSRCNR 306

Query: 123 TVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            VKF  +L     + G + +ATGHY R R     D      + R  D  +DQSYFL+   
Sbjct: 307 EVKFGPMLQWALDERGIERIATGHYARIRHGAQSD-NGCHQLLRGCDSHKDQSYFLYDLP 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIA 240
           Q+ L  L FPLG++ K   R  A   GL  A K++SQD+C     G     +    A   
Sbjct: 366 QEALGRLVFPLGELTKSDTRLEAARHGLRTAKKTESQDLCLADHHGSMRAFLDTYLA--P 423

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR     
Sbjct: 424 RQGEIVLRDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVQLDGALNRVVVAPRRDAAR 483

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVY 349
               +  +NW+     +  +    +  V++R     V   +                   
Sbjct: 484 AGAVVGAVNWVSIPEPQHPI----EVEVQVRYRSGAVAARLTPLPAQEADAAADRPHRCR 539

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +DF + +  +  GQA VFY+ +    R+LGGG+I
Sbjct: 540 LDFAEPQFSITPGQAAVFYSGE----RLLGGGLI 569


>gi|308274462|emb|CBX31061.1| tRNA-specific 2-thiouridylase mnmA [uncultured Desulfobacterium
           sp.]
          Length = 354

 Score =  394 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 184/366 (50%), Gaps = 16/366 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +A+SGGVDS V A LLK  GYDV G+        +  K + S     ++    ++  
Sbjct: 4   KIAIALSGGVDSLVAAYLLKNQGYDVTGIH--FITGYEHGKVQDSGKNNPELQKITQLAK 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I ++   FD   +F+  VI  F  +Y AG+TP PC+ CN+++KF  +L   +++G   L
Sbjct: 62  QIEINIEFFDCRTQFKQIVINYFTQTYKAGKTPNPCIICNQSIKFGVVLEFAKKIGCTFL 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY       G DG     + +  D ++DQSYFL   +Q+QL    FPL    K+ V 
Sbjct: 122 ATGHYAGK--MTGRDG--MFHLLKGADTKKDQSYFLSMLSQKQLSCAIFPLYGFTKKEVI 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            L+ E GL  A + +SQDICF++   Y D + R       +G IV +NG+ +G H GI  
Sbjct: 178 RLSEEKGLHPAVQKESQDICFIKDNDYADFLIRETGFSPNDGIIVDINGKRIGNHKGIHQ 237

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQRRG+     EP +V+ +D +++ V+VG +  L         INW+      +   
Sbjct: 238 FTVGQRRGINCPAPEPYYVISIDADANSVVVGSKNDLLTKHCKAANINWIAKSYTTE--- 294

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K   +IR     VP  +         ++FE  +  V  GQ  VFY  D     V+GG
Sbjct: 295 --LKVCTRIRYRNKEVPSVLFPEPGNCATIEFESPQSAVTPGQCAVFYIGD----EVIGG 348

Query: 381 GIISGS 386
           G I  +
Sbjct: 349 GFIENA 354


>gi|319949296|ref|ZP_08023374.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4]
 gi|319437034|gb|EFV92076.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4]
          Length = 366

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/360 (40%), Positives = 190/360 (52%), Gaps = 19/360 (5%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
           G++V+GV L L +S  A+ R GS  CC+ +D  DARRV D + +  YV+D+ ERFR  VI
Sbjct: 14  GHEVVGVHLAL-SSDPATLRTGSRGCCSREDAGDARRVADLLGIPFYVWDFAERFRADVI 72

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             F  SYA GETP PC+ CN  +KF  LL     LG D +ATGHY R       DG RR 
Sbjct: 73  DDFVESYARGETPNPCLRCNERIKFEALLERGMALGFDAVATGHYARLSTEELPDGSRRP 132

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           ++ R +D  +DQSY L   T +QL    FPLGD  K  VR  A   GL +A K DS DIC
Sbjct: 133 VLRRAVDAAKDQSYVLGVLTPEQLAHSMFPLGDSLKSQVRAEAEAAGLPVATKPDSHDIC 192

Query: 222 FVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGV----AMGE 276
           F+  G     +          G +V  + G  LGRH+GI  +TIGQR+GLGV    A G 
Sbjct: 193 FIPSGDTRAFLGARIG--VRPGAVVDADTGDELGRHDGIHGFTIGQRKGLGVQGPAADGR 250

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V  +D +S  V VG  + L    +      WL D    +       C V+IR+  + 
Sbjct: 251 PRYVTAIDADSGTVTVGGADHLLSVAMTATSPYWLVDDDIRET-----DCHVQIRAHGEA 305

Query: 337 VPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
            P  V+R  DG    + +  ++   GVA GQA V Y S+ +  RVLG G IS S+ +   
Sbjct: 306 TPAHVRRIGDGADATLEITLDEPVRGVAPGQAAVLYRSEPDGDRVLGSGTISASRPATEA 365


>gi|254880932|ref|ZP_05253642.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA]
 gi|294775009|ref|ZP_06740538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|319639940|ref|ZP_07994667.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A]
 gi|254833725|gb|EET14034.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA]
 gi|294451053|gb|EFG19524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|317388218|gb|EFV69070.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A]
          Length = 375

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 26/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + + + + H+V D  E F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  RALAERLGIEHHVADVREEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               ++TGHY R      ++ K +  +    D  +DQSYFL+   Q+ L    FPLG   
Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K+ VR+  R+ G +  A   +S +ICF++ G Y + ++     I      G  V+  G  
Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +   
Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291

Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                  + D  +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY
Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLGG  I+  +
Sbjct: 348 EG----KRVLGGAFIASQR 362


>gi|212692631|ref|ZP_03300759.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855]
 gi|212664916|gb|EEB25488.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855]
          Length = 375

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 187/379 (49%), Gaps = 26/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQ-DEPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + + + + + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  KALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               ++TGHY R      ++ K +  +    D  +DQSYFL+   Q+ L    FPLG   
Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K+ VR+  R+ G +  A   +S +ICF++ G Y + ++     I      G  V+  G  
Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +   
Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291

Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                  + D  +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY
Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLGG  I+  +
Sbjct: 348 EG----KRVLGGAFIASQR 362


>gi|113953824|ref|YP_729973.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9311]
 gi|123327918|sp|Q0IC49|MNMA_SYNS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113881175|gb|ABI46133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9311]
          Length = 391

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 202/401 (50%), Gaps = 34/401 (8%)

Query: 1   MVVSEATRLNSLDLD---KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           M  S AT+  +  L+   + P + RV V +SGGVDSS+ AAL+   G++V G+TL L + 
Sbjct: 7   MTTSTATQAGAEALERLRQWPGEHRVAVGLSGGVDSSLTAALMVEAGWEVEGLTLWLMS- 65

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                 KG+CC  + + DA  +C  + V H+V D  + F   ++      Y AG TPLPC
Sbjct: 66  -----GKGACC-AEGLVDAAGICQQLGVPHHVVDSRDTFVREIVQGLVDGYRAGITPLPC 119

Query: 118 VDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
             CNR+VKF  +L+   ++     +ATGHY R RL   D    R  + R +D  +DQSYF
Sbjct: 120 SKCNRSVKFGPMLAWAEQERNLPRIATGHYARIRL---DREDGRWKLLRGLDRRKDQSYF 176

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRI 235
           L+   Q+ L  + FPLG++ K   R  A   GL  ADK +SQD+C     G     +   
Sbjct: 177 LYDLPQEVLARVVFPLGELTKADTRLEAGRHGLRTADKPESQDLCLADHHGSMRAFLDAY 236

Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295
                 +G+IV  +G ++G+H+GI ++TIGQR+GLG+A  EPL VV LD   ++V+V  R
Sbjct: 237 IP--PRDGEIVLQDGTVVGQHDGIEHFTIGQRKGLGIAWSEPLHVVKLDAAMNQVVVATR 294

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----------QRN 344
                    +  +NW+        +    +  V++R   +PV   +           +  
Sbjct: 295 AEAGRTGCEVGAMNWVSIAPP--PLDSPMEVEVQVRYRSEPVRAHLICIEATANDRAKER 352

Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
                + F++ +  +  GQ  V Y  +     VLGGG+I  
Sbjct: 353 PHRCKLTFQEPQFSITPGQGAVLYDGEV----VLGGGLIDS 389


>gi|116072337|ref|ZP_01469604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. BL107]
 gi|116064859|gb|EAU70618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. BL107]
          Length = 389

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 203/393 (51%), Gaps = 33/393 (8%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            ++EA       L + P + RV V +SGGVDSS+ AALL   G++V G+TL L +     
Sbjct: 6   TMTEAGEAALTRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS----- 60

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             KG+CC  + + DA  +C+ + + H+V D  E F+  ++      Y  G TPLPC  CN
Sbjct: 61  -GKGACC-AEGLVDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCN 118

Query: 122 RTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           R+VKF  +L   + +     +ATGHY R R       + R  + R +D  +DQSYFL+  
Sbjct: 119 RSVKFGPMLEWAKQERHLPRIATGHYARIRHGGD---RGRHQLLRGLDSRKDQSYFLYDL 175

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI 239
            Q+ L  + FPLG++ K   R  A   GL  A+K +SQD+C     G     +       
Sbjct: 176 PQEALGRIVFPLGELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLP-- 233

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
             +G+IV  +G ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR    
Sbjct: 234 PRQGEIVLKDGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRAEAG 293

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDD-------GV 348
                +  INW+      D  +      V++R    PV   +      +DD         
Sbjct: 294 RQEAVVGAINWVSI----DPPLQAMNVDVQVRYRSAPVTARLTPLPATDDDHQRQRPHRC 349

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           ++ F++++  +A GQA VFY  D+    VLGGG
Sbjct: 350 HLVFDENQFSIAPGQAAVFYADDT----VLGGG 378


>gi|71894390|ref|YP_278498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma synoviae 53]
 gi|123644146|sp|Q4A634|MNMA_MYCS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71851178|gb|AAZ43787.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma synoviae 53]
          Length = 372

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 185/390 (47%), Gaps = 31/390 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAG 70
                VVV +SGGVDSSV A LLK++ Y+VIG+ ++ ++S   +   G+       C   
Sbjct: 3   NNKKTVVVGLSGGVDSSVAAYLLKKN-YNVIGLFMRNWDSLINNDYLGNREINNDICPQE 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D  DA+ +   +++  Y  D+ + + + V   F S Y  G TP P + CN+ +KF    
Sbjct: 62  LDYKDAQEIARQLDIPLYRVDFVKEYWDYVFENFISEYKKGRTPNPDILCNKYIKFDLFA 121

Query: 131 SVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +L  D +ATGHY + +     +G+    + R  D  +DQSYFL   +++QL  + 
Sbjct: 122 KHAFNELKTDYIATGHYAKMK-----NGE----LYRASDKNKDQSYFLSQLSKEQLKKVL 172

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPL ++ K+ +R +ARE  L  A K DS  ICF+ + K+   ++      A +G+++ + 
Sbjct: 173 FPLENLTKDEIRKIAREQNLITAAKKDSTGICFIGERKFAKFLQNYIP--AKKGNVLDIT 230

Query: 250 G-QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
             +I+G H+G   YTIGQR+GL +    E  +V   +   + + V P             
Sbjct: 231 NQKIVGEHSGCFYYTIGQRKGLNLGGNKESYYVCGKNVAENIIYVAPSS---RPEFLESN 287

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
                +        +      K R  Q+   V V+  ++  V V ++K++  +  GQ  V
Sbjct: 288 SLLASNLNLNTNNFNKKNLSAKFRYRQEDSKVKVEFLENNFVKVYYDKAQ-AITPGQQVV 346

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           FY  +    + +GG +I     +D     L
Sbjct: 347 FYDGE----KCIGGAVIEEIYLNDKKLTYL 372


>gi|58039815|ref|YP_191779.1| tRNA-specific 2-thiouridylase MnmA [Gluconobacter oxydans 621H]
 gi|58002229|gb|AAW61123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconobacter oxydans 621H]
          Length = 355

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/368 (47%), Positives = 239/368 (64%), Gaps = 25/368 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVAALLKR G++VIG TLQLY+  +A  + G+CCAG+D+ DAR V D +   
Sbjct: 1   MSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQA-AKPGACCAGRDIMDARAVADRLGFP 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D E RFR++V+  FA +YA GETP+PCV CN+ VKF+DLL + R LG + +ATGHY
Sbjct: 60  HYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEAMATGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205
           +R       +G     M RP+D ERDQ++FLFATT+ QL  LRFPLG+M  K  VR LA+
Sbjct: 120 VRRV-----EGPEGAEMHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAHVRALAQ 174

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E+GL+IA K DSQDICFV  G Y ++V+++   +  EG+IV  +G++LGRH G+  YT+G
Sbjct: 175 ELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGVARYTVG 234

Query: 266 QRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLGDGLFED 318
           Q + LG    A GE   V  +D    R++VGPR    E+     + LR++NWL      D
Sbjct: 235 QSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL-----ID 289

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           A  +G +C V+IR+ +      V+  ++ G  V+  ++ +  A GQACV Y      +RV
Sbjct: 290 APAEGVRCGVQIRAREKLREALVKPLENGGALVELTEAAM-PAPGQACVLYDG----SRV 344

Query: 378 LGGGIISG 385
           LGGG I+ 
Sbjct: 345 LGGGFITA 352


>gi|42523417|ref|NP_968797.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575623|emb|CAE79790.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 351

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/364 (38%), Positives = 193/364 (53%), Gaps = 20/364 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDSS  AALL   GY+VIG T+Q+++       +  G+CC+  DV DAR V D + 
Sbjct: 1   MSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDARAVADRLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV + E +FR AVI PF  +Y  G+TPLPCV+CN  +KF  L+   R+L  D +ATG
Sbjct: 61  IPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMRELECDYIATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY +       D K +  +    D  +DQ+YFLF    + +  L FP+GDMKK  VR+ +
Sbjct: 121 HYAKIVY----DDKGKASIHTSTDDWKDQTYFLFTIDPELVPKLLFPVGDMKKPQVREYS 176

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVH-LNGQILGRHNGII 260
              GL  A K DSQ ICFV    Y + +K         + +G I     GQ++  H GI 
Sbjct: 177 ESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQVMASHEGIH 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           NYT GQ +GLG+   E LFV+ +D + + V VG  + L  + +       + D    D +
Sbjct: 237 NYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVGEEKHLFANEVD------VVDPKLLDEI 290

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            DG    VKIR      P  V +   G  + F + +  V  GQA VFY       +++GG
Sbjct: 291 QDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFYRD----RQLVGG 346

Query: 381 GIIS 384
           G I+
Sbjct: 347 GWIT 350


>gi|193212019|ref|YP_001997972.1| tRNA-specific 2-thiouridylase MnmA [Chlorobaculum parvum NCIB 8327]
 gi|193085496|gb|ACF10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobaculum parvum NCIB 8327]
          Length = 364

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 193/379 (50%), Gaps = 23/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              V++ +SGGVDS+  A LL + GY V G+ +++ ++ + +       +   + D    
Sbjct: 4   KQHVIIGLSGGVDSAAAACLLIKQGYRVTGLNIRVLDTPEDTSTLA--PSAMRISD---- 57

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +  +   +  +   +F   V+  F   Y AG TP PC+ CN+ +K+  L    R LGAD
Sbjct: 58  SEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLGAD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY R+    G        + + +D E+DQSYFL+  TQ +L    FPLG   K  
Sbjct: 118 LVATGHYARTERRDG-----VTRLLKGIDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRH 256
           VR+LAR   +  A+K +SQ+ICFV    Y   + R   G+      G+IV  +G+++G H
Sbjct: 173 VRELARSFEVHAAEKKESQEICFVPHDDYCAYLTRAIPGLEERVAGGEIVDQSGKVIGHH 232

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            G   YTIGQRRGLGV+ GEP++V  +D   +R+ VG +  LE   +    +NW G    
Sbjct: 233 RGYPFYTIGQRRGLGVSTGEPVYVTKIDAEHNRIRVGSKADLECRSLIATAMNWSGIA-- 290

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                  F+   +IR         V+   DD   V F + + GVA GQA VFY  D    
Sbjct: 291 --TPDAPFETEARIRYRDRQSACMVEPLGDDRARVRFHEPKQGVACGQAVVFYDGD---- 344

Query: 376 RVLGGGIISGSKRSDAVEE 394
            VLGGGII+    +D+   
Sbjct: 345 EVLGGGIIAEVNPADSATP 363


>gi|150003843|ref|YP_001298587.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
 gi|205810962|sp|A6KZV1|MNMA3_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|149932267|gb|ABR38965.1| putative tRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
          Length = 375

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 187/379 (49%), Gaps = 26/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + + + + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  RALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               ++TGHY R      ++ K +  +    D  +DQSYFL+   Q+ L    FPLG   
Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K+ VR+  R+ G +  A   +S +ICF++ G Y + ++     I      G  V+  G  
Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +   
Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291

Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                  + D  +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY
Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLGG  I+  +
Sbjct: 348 EG----KRVLGGAFIASQR 362


>gi|225851037|ref|YP_002731271.1| tRNA-specific 2-thiouridylase MnmA [Persephonella marina EX-H1]
 gi|254811456|sp|C0QRH5|MNMA_PERMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225646565|gb|ACO04751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Persephonella marina EX-H1]
          Length = 353

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/365 (40%), Positives = 199/365 (54%), Gaps = 15/365 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV V MSGGVDSSV A LLK  GYDVIGVTL+L +   ++  +  CC+ QD+ DA+RV 
Sbjct: 1   MRVAVGMSGGVDSSVAALLLKEKGYDVIGVTLKLSSIVCSNDIQ-VCCSPQDIKDAKRVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             + + HYV D+E+ FR  VI  F   Y  G+TP PC  CNR VK   L       LGAD
Sbjct: 60  SYLGIEHYVIDWEDIFREKVINYFVEEYKKGKTPNPCSVCNREVKTGRLAKFVNIVLGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHYI+    + D     +++ R  D+++DQSYF+    +  L  L FPL D+ KE 
Sbjct: 120 KFATGHYIK----IEDHPVYGKVIKRGSDIKKDQSYFMALLERDVLDLLIFPLSDLTKEE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A +  + ++ K +S +ICF       + +   N      GDIVH++G+ +G+H G+
Sbjct: 176 VRKIAEDYKIPVSQKKESFEICFTAGKTPAEYLLENNLLAFESGDIVHIDGKTVGKHKGL 235

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGLGV   EPL+V+  D   + V+VG RE L    +   + N+L     E  
Sbjct: 236 PFYTVGQRRGLGVRWREPLYVIEKDAERNTVVVGEREKLLTDHVSSEDFNFL--VPVEKW 293

Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             +G    V+ R  Q  V +  V    + +   FEK E   A GQ    Y  D     +L
Sbjct: 294 KKEGL--SVQGRYRQKAVKIKDVSIEGNRLTAYFEKPEERFAKGQVLAVYDGDI----LL 347

Query: 379 GGGII 383
           GGGII
Sbjct: 348 GGGII 352


>gi|317472707|ref|ZP_07932022.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899884|gb|EFV21883.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 175/301 (58%), Gaps = 7/301 (2%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           +VVV MSGGVDSSV A LLK  GY+VIGVT+Q++   +       G CC    V DARRV
Sbjct: 4   KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++ +YV ++++ F+  VI  F   Y  G TP PC+ CNR VK+  LL  +  +GAD
Sbjct: 64  AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R           R  + R    E+DQ+Y L+  TQ QL     P+G+  K+ 
Sbjct: 124 YIATGHYARIEKLS----NGRYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKDE 179

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++A ++ L +A K DSQDICFV  G Y D ++         G+ V ++G ILG H GI
Sbjct: 180 IREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKGI 238

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           + YT+GQRRGLG+++ +P +VV +DK  + V++G  E L    +Y   +N +     ED 
Sbjct: 239 VCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIEDG 298

Query: 320 V 320
           +
Sbjct: 299 M 299


>gi|21674668|ref|NP_662733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium tepidum TLS]
 gi|81790728|sp|Q8KBD3|MNMA_CHLTE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21647873|gb|AAM73075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium tepidum TLS]
          Length = 366

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 195/384 (50%), Gaps = 27/384 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               V++ +SGGVDS+V A LL + GY V G+ +++ ++ + +              A R
Sbjct: 3   SPQHVIIGLSGGVDSAVAACLLIKQGYHVTGLNIRVLDTPEDT--------PTLAPSAMR 54

Query: 79  VCD--TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + D    +   +  +   +F   V+  F   Y AG TP PC+ CN+ +K+  L    R L
Sbjct: 55  ISDSEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLL 114

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD++ATGHY R+ L           + + +D E+DQSYFL+  TQ +L    FPLG   
Sbjct: 115 RADLVATGHYARTELRDA-----VTRLLKGVDPEKDQSYFLWMLTQAELAKTLFPLGGYT 169

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQIL 253
           K  VR+LAR  G+  A+K +SQ+ICFV    Y   +     G+      G+IV   G+++
Sbjct: 170 KAEVRELARSFGVHAAEKKESQEICFVPHDDYCAYLANAIPGLEARVAGGEIVDQAGKVI 229

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   YTIGQRRGLGV+ GEP++V  +D   +R+ VG +  LE   +    +NW+G 
Sbjct: 230 GHHRGYPFYTIGQRRGLGVSTGEPVYVTEIDAEHNRIHVGSKADLECRSLIASGMNWIGI 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                     F+   +IR         ++  +D+  +V F + + GVA GQA VFY  D 
Sbjct: 290 A----TPDKSFEAEARIRYRDRQSACMIEPMDDNRAWVSFREPKQGVACGQAVVFYDGD- 344

Query: 373 NEARVLGGGIISGSKRSDAVEESL 396
               VLGGGII+        ++ L
Sbjct: 345 ---EVLGGGIIAKVNPEAPPQKIL 365


>gi|57234425|ref|YP_181511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides ethenogenes 195]
 gi|123618735|sp|Q3Z8D8|MNMA_DEHE1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57224873|gb|AAW39930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides ethenogenes 195]
          Length = 357

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 178/363 (49%), Gaps = 20/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VAMSGGVDSSV A LL   GYDV GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 8   IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL       A  LA
Sbjct: 65  LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLEKIPDFNAGYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R      ++G     + +  D ++DQSYFL+    + L  L FPLG   K+ +  
Sbjct: 125 TGHYARV--LSDENGT---HLLKGADEKKDQSYFLYTLPPESLSRLIFPLGKRYKKDIIR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA +M L +  + +SQD+CF+  G Y   +          G I+   G+ILG H G+  Y
Sbjct: 180 LADKMKLPV-SQKESQDVCFIPDGDYKSFLATRMGFT--PGKILDKTGKILGEHQGLPLY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A  E LFV  ++  ++ ++V   + L   RI L    W    +  D    
Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTIMVASHDQLYTSRILLSNFIWRESRIPLDTPG- 295

Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VK+R    P  V  + +  D   ++          GQA V Y  D     VLGGG
Sbjct: 296 ---MIVKVRYKAAPAEVKKISQTGDFYLLELASPVWAATPGQAAVIYLGD----MVLGGG 348

Query: 382 IIS 384
           II 
Sbjct: 349 IIE 351


>gi|108804192|ref|YP_644129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
 gi|123177389|sp|Q1AWB1|MNMA_RUBXD RecName: Full=Bifunctional protein nifU/mnmA; Includes: RecName:
           Full=NifU-like protein; Includes: RecName:
           Full=tRNA-specific 2-thiouridylase mnmA
 gi|108765435|gb|ABG04317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 488

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/363 (39%), Positives = 196/363 (53%), Gaps = 23/363 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV AMSGGVDS+V A LLK  GY+V+ VT +L++    S+   SCC+   V  AR     
Sbjct: 146 VVAAMSGGVDSAVTALLLKERGYEVVAVTFRLHDGEPGSR---SCCSPDTVLFARETAHG 202

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H+  +  E F   V+  F  SYAAG TP PCV CN  VKF     +  +LG   +A
Sbjct: 203 LGIPHFTLNLRELFDRRVMRDFVGSYAAGRTPNPCVACNAHVKFHAAAFLADRLGLRHVA 262

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R              + RP D  +DQ+Y L+    + L    FPLGD +K  VR 
Sbjct: 263 TGHYARV--------GEGPCLERPEDGRKDQTYVLWPVPPRLLGRTIFPLGDYRKSEVRR 314

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A E GL +A   +SQDICF+  G Y           +  G+IV   G++LGRH G++++
Sbjct: 315 IAEERGLAVARTPESQDICFIPDGDYRS--FVRRRVRSEPGEIVDRQGRVLGRHAGVVDF 372

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQRRGLG++   PL+V  +   S +V+VG R  LEV R+ +R  NW  D         
Sbjct: 373 TVGQRRGLGISAPTPLYVTEVRPRSRQVVVGSRRELEVRRMLVRGANWFLDPREA----- 427

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
                V++R + +PVP  ++    G  V   +   GVA GQ+ VFYT D   A+V+GGGI
Sbjct: 428 ---ALVQVRYNGEPVPCELEEGAGGWEVALLEPVFGVAPGQSAVFYTRD--GAKVVGGGI 482

Query: 383 ISG 385
           I+ 
Sbjct: 483 IAR 485


>gi|309812162|ref|ZP_07705920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dermacoccus sp. Ellin185]
 gi|308433849|gb|EFP57723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dermacoccus sp. Ellin185]
          Length = 384

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/384 (35%), Positives = 196/384 (51%), Gaps = 21/384 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRVV AMSGGVDS+V A+ +   G+DV+GV L L  S    +     CC  +D  DARRV
Sbjct: 1   MRVVAAMSGGVDSAVAASRMLEAGHDVVGVHLALSQSAATLRESARGCCTIEDAGDARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  ERF+  V+  F + Y AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ADRLGIPFYVWDMAERFKADVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +       +G   + + R +D+ +DQSY L     +QL    FPLGD  K  
Sbjct: 121 AVATGHYAQIV-----EGPNGKELHRAVDMAKDQSYVLGVLDAEQLAHSFFPLGDTTKPQ 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A   G  +A+K DS DICF+  G     + +        GDIV  +G+++GRH G 
Sbjct: 176 IREEAAAKGFYVANKPDSHDICFIADGDTKAWLTKRLGE--KPGDIVDTDGEVVGRHEGA 233

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             YT+GQRRGLG+          +VV +   ++ V+VG  + L V  I      W     
Sbjct: 234 YAYTVGQRRGLGLKVPRDDHAKRYVVDVQPKTNTVVVGTADLLGVDVIEGLHARW----- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                V   +   ++R+  +  P  V  +DD V V  +    GVA GQ+ V Y       
Sbjct: 289 PGPPPVGEVRLGAQLRAHGEEFPATVTADDDRVVVRLDARTRGVAPGQSVVLYEG----T 344

Query: 376 RVLGGGIISGSKRSDAVEESLLSV 399
           RV+G   I+ + R+     S+++V
Sbjct: 345 RVVGSATITATSRAPRQSSSVVTV 368


>gi|265752582|ref|ZP_06088151.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|263235768|gb|EEZ21263.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 375

 Score =  392 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 187/379 (49%), Gaps = 26/379 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N +D RV+V MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A
Sbjct: 2   NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + + + + + H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q 
Sbjct: 61  KALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               ++TGHY R      ++ K +  +    D  +DQSYFL+   Q+ L    FPLG   
Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K+ VR+  R+ G +  A   +S +ICF++ G Y + ++     I      G  V+  G  
Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G+H G   YTIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +   
Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291

Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
                  + D  +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY
Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RVLGG  I+  +
Sbjct: 348 EG----KRVLGGAFIASQR 362


>gi|183981704|ref|YP_001849995.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU
           [Mycobacterium marinum M]
 gi|183175030|gb|ACC40140.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU
           [Mycobacterium marinum M]
          Length = 357

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 20/365 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA +   G+DV+GV L L  +  A +     CC+ +D  DARRV D + +
Sbjct: 1   MSGGVDSSVAAARMVDAGHDVVGVHLALSTAPGALRTGSRGCCSKEDASDARRVADVLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ ERF+  VI  F SSYA GETP PC+ CN+ +KFS L +    LG DV+ TGH
Sbjct: 61  PFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGFDVVVTGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R              + R +D ++DQSY L   T +QL    FP+GD  K  +R+ A 
Sbjct: 121 YARLSEG---------RLRRAVDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKPQIREEAS 171

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
             GL +ADK DS DICF+  G     +          G +V   G +L  H+G+  +TIG
Sbjct: 172 RRGLAVADKPDSHDICFIPSGNTQTFLGERIG--VRRGTVVDAAGAVLATHDGVHGFTIG 229

Query: 266 QRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GLG+      G P +V  +D  +  V VG    L+VH +  R   +        A  
Sbjct: 230 QRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAGT----APT 285

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
              +C V++R+  +      +   D + V       GVA GQ  V Y  D +   VLG  
Sbjct: 286 GPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPDGDEVLGSA 345

Query: 382 IISGS 386
            I+ +
Sbjct: 346 TITAT 350


>gi|270308092|ref|YP_003330150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. VS]
 gi|270153984|gb|ACZ61822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. VS]
          Length = 357

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 176/363 (48%), Gaps = 20/363 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VAMSGGVDSSV A LL   GYDV GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 8   IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL       A  LA
Sbjct: 65  LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLDKIPDFNAGYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    V  DG     + +  D ++DQSYFL+      L  L FPLG   K+ +  
Sbjct: 125 TGHYAR----VLSDGNG-THLLKGADEKKDQSYFLYTLPPASLSRLMFPLGKRYKKDIIR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA +M L +  + +SQD+CF+  G Y   +          G I+   G+ILG H G+  Y
Sbjct: 180 LAAKMKLPV-SQKESQDVCFIPDGDYKSFLSTRMGFT--PGKILDKTGKILGEHQGLPLY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLG+A  E LFV  ++  ++ + V   + L   RI L    W    +  D    
Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTITVASHDQLYTSRILLSNFIWRESSISIDTPG- 295

Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VK+R    P  V  + +  D   ++          GQA V Y  D     VLGGG
Sbjct: 296 ---MIVKVRYKAAPAEVKKISQTGDFHLLELASPVWAATPGQAAVIYLGD----MVLGGG 348

Query: 382 IIS 384
           II 
Sbjct: 349 IIE 351


>gi|87301094|ref|ZP_01083935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 5701]
 gi|87284062|gb|EAQ76015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 5701]
          Length = 376

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 196/393 (49%), Gaps = 30/393 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC  + +
Sbjct: 1   MRAWPGEHRVAVGLSGGVDSSLTAALLVAAGWQVEGLTLWLMS------GKGACC-AEGL 53

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + V H+V D  ERFR  ++      Y  G TPLPC  CNR VKF+ +L   
Sbjct: 54  VDAAGLCEQLGVPHHVVDSRERFREQIVEFLVQGYEGGVTPLPCSRCNREVKFTPMLEWA 113

Query: 134 R-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LG   +ATGHY R RL        R  + R +D+ +DQSYFL+   Q  L  L FPL
Sbjct: 114 EAELGISRIATGHYARVRLADAGARAGRHQLLRGLDVHKDQSYFLYDLPQAVLARLVFPL 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G++ K   R  A  +GL  A K +SQD+C     G     +         +G IV  +G 
Sbjct: 174 GELTKPDTRLEAEALGLRTARKPESQDLCLADHHGSMKAFLDAYLP--PRQGQIVLADGT 231

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G H+GI ++TIGQR+GLGVA  EPL VV LD   +RV+V PR         +  INW+
Sbjct: 232 VVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNRVVVAPRAEAARSGCVVGAINWI 291

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----------VYVDFEKSEVGVA 360
                E       +  V++R    PV   +   +               ++F + +  + 
Sbjct: 292 SIPPPE----APLELEVQVRYRSAPVAAQLIPLEPTAADAAAARPHRARLNFHEEQFSIT 347

Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            GQA VFY  +     VLGGG+I       A +
Sbjct: 348 PGQAAVFYAGEV----VLGGGLIQRHPPDPAHQ 376


>gi|161350046|ref|NP_894177.2| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9313]
 gi|205822220|sp|Q7TTR0|MNMA_PROMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 409

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 197/391 (50%), Gaps = 38/391 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   +
Sbjct: 28  LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+++LS  
Sbjct: 81  IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWA 140

Query: 134 R-QLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           + +L    +ATGHY R R             D   R  + R +D  +DQSYFL+  +Q  
Sbjct: 141 KKELQLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLLRGLDQNKDQSYFLYDLSQDV 200

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243
           L  + FPLG++ K   R  A   GL  A K +SQD+C     G     +       A +G
Sbjct: 201 LAKVIFPLGELTKAETRQEAERYGLRTAKKEESQDLCLADHYGSMKAFLDNYLP--ARQG 258

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR        
Sbjct: 259 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNC 318

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352
            +  +NW+                V++R    PV   +   +               + F
Sbjct: 319 VVGAVNWISMA----PPSTTINVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTF 374

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  +  GQA VFY +D+    VLGGG+I
Sbjct: 375 NEKQFSITPGQAAVFYAADT----VLGGGLI 401


>gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
 gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
          Length = 489

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 180/373 (48%), Gaps = 20/373 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C   +D+  A+ V
Sbjct: 77  PLRVAVLVSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAV 136

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    + Y  G TP P V CN  +KF   L     LG D
Sbjct: 137 CDKIDVPLEVVHLSDEYWNYVVSHMINEYRCGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        ++ +   I+    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 197 YIASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQLRRLLFPLGCITKDE 256

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +MGL    + DSQ ICF+ + K+ + V+R      +EG I+   +G  LG+H G
Sbjct: 257 VRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGE--MEGIILEAESGDYLGKHRG 314

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  +NW     
Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDSS- 372

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +  +   K+R S +     +     + N+D + V   + + G+A+GQ   FY  
Sbjct: 373 ---GPGNNEQLKCKVRHSPEFHDCTLIKEHTEENEDALVVHLSEDDQGLAAGQFAAFY-- 427

Query: 371 DSNEARVLGGGII 383
             +E   LG GII
Sbjct: 428 --SEHSCLGSGII 438


>gi|189501011|ref|YP_001960481.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium phaeobacteroides
           BS1]
 gi|229486338|sp|B3EN11|MNMA_CHLPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189496452|gb|ACE05000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeobacteroides BS1]
          Length = 359

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 194/370 (52%), Gaps = 25/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80
            V+V +SGGVDS+V A +L  +GY V G+ +++ +    +   + S     D  + R   
Sbjct: 7   HVIVGISGGVDSAVAACILIENGYRVTGLHIKVLDHSDDSLHLEKSPLIISDRKEFR--- 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                  +  +    FR  VI  F   Y +G TP PC+ CN+ +K+  LL     L A +
Sbjct: 64  ----FPVFSLNLSGSFRRDVIDYFLQDYLSGRTPNPCMVCNKLIKWKGLLKGADLLQATL 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      D G+ +  + +  D ++DQSYFL+  + ++L     P+G++ K+ V
Sbjct: 120 VATGHYARI-----DCGREKCRLLKGTDSQKDQSYFLWMLSSEELSKTLLPVGNLTKQEV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHN 257
           R+LAR  G+  A+K +SQ+ICFV    Y +VVK    G+A +   G+I+   G+++G H 
Sbjct: 175 RELARRFGVRAAEKKESQEICFVPDNDYREVVKSSRPGLAEKLTGGEIIDTEGKVIGHHA 234

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQR+GLG++  EPL+V  LD   +R+ VG +  L+  ++   ++NW G    E
Sbjct: 235 GYPFYTIGQRKGLGISSPEPLYVNRLDPEKNRIRVGGKAMLQCRKLIAGQMNWTGISPPE 294

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +     +   +IR         +   + +   V F+K +  V  GQA VFY  D     
Sbjct: 295 TST----RAAARIRYRDTGEACTIVPVEKERFEVIFDKPKQSVTPGQAVVFYRDD----E 346

Query: 377 VLGGGIISGS 386
           V+GGGII  +
Sbjct: 347 VIGGGIIVEA 356


>gi|188997646|ref|YP_001931897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932713|gb|ACD67343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 352

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 208/367 (56%), Gaps = 17/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++VV +SGGVDSS  A LLK+ GY+V+G++L+  +          CC+ +D+ DA++V 
Sbjct: 2   KKIVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCELDTQVCCSDKDILDAKKVA 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + HYV ++++ F   VI  F   Y +G TP PC  CN+ VK        + LG D 
Sbjct: 62  EFLEIPHYVINWKDIFEKKVINYFIEVYQSGLTPNPCSICNKEVKTGLFAKYIKSLGFDY 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHYIR+ +  G      +++ R +D  +DQSYF+    ++ +  L FPLG++ KE V
Sbjct: 122 LATGHYIRTDIQDG-----IKVLKRGIDKNKDQSYFMALVEKEVVDTLTFPLGNLTKEEV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A+E  + ++ K +S +ICF +     +  K +N     EG+IVH++G++LGRH GI 
Sbjct: 177 RKIAQENRIPVSQKEESFEICFTKGKSPEEYFKTLN-IKTNEGEIVHISGKVLGRHKGIE 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           +YTIGQRRGL +A  EPL+V+  D   ++++VG ++ L  +++  ++ N+L        +
Sbjct: 236 SYTIGQRRGLNIAWKEPLYVIEKDALKNKIVVGEKDYLLTNKVVAKDFNFLVPFEKWKKI 295

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                  V+ R  Q P+       D + + V FE+     A GQ    Y  D+    +LG
Sbjct: 296 ------EVQGRYKQKPIKAKEYHLDRENLTVIFEEKVPKFAPGQILAVYDGDT----LLG 345

Query: 380 GGIISGS 386
           GGIIS S
Sbjct: 346 GGIISRS 352


>gi|182415638|ref|YP_001820704.1| tRNA-specific 2-thiouridylase MnmA [Opitutus terrae PB90-1]
 gi|205816897|sp|B1ZZ32|MNMA_OPITP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|177842852|gb|ACB77104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutus terrae PB90-1]
          Length = 378

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 189/388 (48%), Gaps = 36/388 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +++VAMSGGVDSSV A LLK+ GYDV+G  ++ + +       G C   QD+ DAR
Sbjct: 2   PGAEKILVAMSGGVDSSVAALLLKQQGYDVVGAYMKNWINEDQV--IGHCPWQQDIEDAR 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   I +   V +    +R  V+      YA G TP P + CNR VKF    S  +  G
Sbjct: 60  RVATQIGIEFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKFGVFRSWAKDHG 119

Query: 138 ADVLATGHYIRSRLYVGD------------DGK--RRRIMCRPMDLERDQSYFLFATTQQ 183
              +ATGHY +      D            DG       +    D  +DQSYFL   +Q+
Sbjct: 120 FAAIATGHYAQRVEVKPDLVTPAVLGGLNADGTPASTFALLEGADKNKDQSYFLALLSQE 179

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           QL D RFP+G + K  +R +ARE GL  ADK DSQ ICF+ + K  D ++         G
Sbjct: 180 QLRDARFPIGHLPKPELRRIAREAGLATADKKDSQGICFIGEVKMQDFLRAYVPDA--PG 237

Query: 244 DIVH-LNGQILGRHNGIINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG----PR 295
            IV   +G+ LG+H G+  YT+GQR+G+G+      E   VV        ++V       
Sbjct: 238 PIVRATDGRELGQHRGLHFYTLGQRKGIGIPSNTDHEAYVVVGKRAADRALLVAFDHPDA 297

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEK 354
             L    + +  ++W+G  +     ++G     ++R     VP+ FV  ++    + F  
Sbjct: 298 PGLFQREVRVHALSWIGKPVTTARALEG-----RVRYRDPRVPLEFVPESETTALIRFAA 352

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGI 382
            + G+A+GQ   FY  +    R+LGGG+
Sbjct: 353 PQRGLAAGQILAFYDGE----RLLGGGV 376


>gi|148242801|ref|YP_001227958.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. RCC307]
 gi|205828978|sp|A5GUP6|MNMA_SYNR3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147851111|emb|CAK28605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RCC307]
          Length = 383

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 190/385 (49%), Gaps = 33/385 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL+   + V G+TL L +       KG+CC  + +
Sbjct: 19  LQAWPGEHRVAVGLSGGVDSSLTAALLRDAQWQVEGLTLWLMS------GKGACC-AEGL 71

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D  + F+  ++      Y  G TPLPC  CNR VKF  +L   
Sbjct: 72  VDAAGLCEELEIPHHVVDSRDTFQQEIVQFLVQGYGDGITPLPCSRCNRAVKFGPMLDWA 131

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++ G   +ATGHY R R         R  + R +D  +DQSYFL+   Q  L  L FPL
Sbjct: 132 EKERGITRVATGHYARLRPNAD---GGRTQLLRGLDARKDQSYFLYDLPQAVLQRLIFPL 188

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G++ K   R  A  +GL  A+K +SQD+C     G     +          G+IV  +G+
Sbjct: 189 GELTKPDTRAEAARLGLRTAEKPESQDLCLADHHGSMKAFLDAYLPE--RPGEIVLTDGR 246

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ++G+H+GI ++TIGQR+GLGVA  EPL VV LD   ++V+V PR         +  +NW+
Sbjct: 247 VVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNQVVVAPRAEAARGDAVVGAVNWV 306

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360
                 D   +     V++R    P    +                   +DF + +  + 
Sbjct: 307 SI----DPPAEPLDVEVQVRYRSAPERARLTPLPPVESDHQAERPHRCRLDFAEEQFSIT 362

Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385
            GQA VFY  +      LGGG+I  
Sbjct: 363 PGQAAVFYDGEV----CLGGGLIQA 383


>gi|213964680|ref|ZP_03392880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium amycolatum SK46]
 gi|213952873|gb|EEB64255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium amycolatum SK46]
          Length = 379

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 204/386 (52%), Gaps = 26/386 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDSSV AA     G++V+GV L L    ++       CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSSVAAARALAAGHEVVGVHLALSKDPQSVRAGSRGCCSLEDSGDARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ ERF+  V+  F  SY  GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDELGIPFYVWDFSERFKEEVMDDFYDSYERGETPNPCLRCNERIKFAALLERGLALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY      +GDDG    ++ R  D+++DQSY L    ++QL    FP+GD +K  
Sbjct: 121 AVVTGHYA----LLGDDG----LLRRGRDMKKDQSYVLGVLDREQLSHSLFPVGDTEKPE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           +R+ AR+MGL  A+K DS DICF+  G     +          G IV    G  +  H+G
Sbjct: 173 IREEARDMGLGTANKPDSYDICFIPDGNTQAFLGAKIGR--RPGLIVDKETGDTVAEHDG 230

Query: 259 IINYTIGQRRGLG----VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+G+G    +A G+P +V  +D +++ V +G  + L V+ +      WL + 
Sbjct: 231 VYGFTIGQRKGIGLPGPMADGKPRYVTGIDADTATVTIGTADDLNVNVLQADRAIWLANP 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDD------GVYVDFEKSEVGVASGQA 364
                  +  K  V++R+   P+   ++     +DD         +   +   GVA GQA
Sbjct: 291 DEVLVASEAGKLQVQVRAHGRPIDCRIEVLAGPDDDVTGRGGTFRLHLSEPLRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390
            V Y +D+    VLG G I  + R +
Sbjct: 351 AVLYHTDTAGDYVLGSGTIVSTAREE 376


>gi|255011782|ref|ZP_05283908.1| putative tRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 364

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 33/379 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++    + RV+V MSGG+DS+    +L+  GY+++GVT++++                  
Sbjct: 1   MNMKESNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP-------------- 46

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +   + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+   
Sbjct: 47  QDARELAVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWA 106

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +LG D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG
Sbjct: 107 DKLGCDWIATGHYSRL-----EERNGYIYIVAGDDEKKDQSYFLWRLGQDVLRRCIFPLG 161

Query: 194 DMKKESVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLN 249
           +  K++VRD  RE G +    + +S ++CF+ +G Y D ++     +      G  V   
Sbjct: 162 NYTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIGPGWFVSSE 220

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N
Sbjct: 221 GVKLGQHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMVAEQDN 280

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
            +     ED +    +  V+IR    P+P  V+R +DG + V F      +A GQ+ VFY
Sbjct: 281 IVD----EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFY 336

Query: 369 TSDSNEARVLGGGIISGSK 387
                  RV+GG  I+  +
Sbjct: 337 DG----RRVIGGAFIASQR 351


>gi|291229392|ref|XP_002734665.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase-like [Saccoglossus kowalevskii]
          Length = 390

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/392 (27%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +        +V  MSGGVDSSV A LLKR G+ V G+ ++ ++S   S   G C    D 
Sbjct: 1   MAGRLLKHHIVCGMSGGVDSSVAALLLKRQGFRVTGLFMKNWDSLDES---GICSTEGDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD +++  +   + + + + V   F   Y  G TP P + CN+ +KF   L+  
Sbjct: 58  NDAQFVCDKLDIPLHQVSFVKEYWHDVFSNFLKEYENGTTPNPDILCNKLIKFDKFLNYA 117

Query: 134 RQ-LGADVLATGHYIRSR------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            +   A  LATGHY R+              K    + + +D  +DQ++FL   +Q  L 
Sbjct: 118 MKNFDAHALATGHYARTSGGYSVLTNPESVKKNGIALLKGLDANKDQTFFLSQISQNALQ 177

Query: 187 DLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
              FPLG++ K+ V+++A   G + I  K +S  ICF+   K+   ++      +  G+ 
Sbjct: 178 KTIFPLGELMKKEVKEIALRAGFERIVKKKESMGICFIGTRKFQSFIQEYLETAS--GNF 235

Query: 246 VHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVH 301
           V + +G I+G H G   YT+GQR  +G    +  F+ + D  +  + V P     +L   
Sbjct: 236 VSVEDGTIMGDHKGCHLYTVGQRSNIG-GQSQAWFICHKDSTTQTIYVAPGSHHPALFYQ 294

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRND--DGVYVDFEKSEV 357
            +    + W+     +      F+C  + +       V   V  ND   G+ +  ++   
Sbjct: 295 TMITEPLYWIRQSPPKLLEKKMFECDFRFQHVNVHPLVRCTVTVNDKQQGI-ISLQQPLR 353

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
            + +GQ  V Y  D      LGG  I  +  S
Sbjct: 354 ALTAGQFAVLYDED----ECLGGARIMKTGPS 381


>gi|298480213|ref|ZP_06998411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|298273494|gb|EFI15057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 361

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +  E   G  V+  G  LG
Sbjct: 165 KVREYLAEKGYETKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       
Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|73748589|ref|YP_307828.1| tRNA-specific 2-thiouridylase MnmA [Dehalococcoides sp. CBDB1]
 gi|289432615|ref|YP_003462488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. GT]
 gi|123619640|sp|Q3ZXD7|MNMA_DEHSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205814533|sp|A5FR85|MNMA_DEHSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73660305|emb|CAI82912.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. CBDB1]
 gi|288946335|gb|ADC74032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. GT]
          Length = 357

 Score =  391 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 183/364 (50%), Gaps = 20/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSSV A LL   GY+V GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 8   VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+ HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL+  +   AD LA
Sbjct: 65  LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 124

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +   ++G     + R  D ++DQSYFL+    + L  L FPLG   K+ +  
Sbjct: 125 TGHYAR--IVSDENGT---HLLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 179

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA  M L +  + +SQD+CF+  G Y   +          G I+   G+ILG H G+  Y
Sbjct: 180 LATNMKLPV-SQKESQDVCFIPDGDYKSFLATRMGFT--PGKILDTTGKILGEHQGLPLY 236

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLG+A  E LFV  ++ +++ + V   + L   RI L    W          +D
Sbjct: 237 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIW----RESGIPLD 292

Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VK+R    P  V  + ++ D   ++          GQA V Y  D     VLGGG
Sbjct: 293 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 348

Query: 382 IISG 385
           II  
Sbjct: 349 IIES 352


>gi|147669349|ref|YP_001214167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. BAV1]
 gi|146270297|gb|ABQ17289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. BAV1]
          Length = 361

 Score =  391 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 183/364 (50%), Gaps = 20/364 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VAMSGGVDSSV A LL   GY+V GV+LQL   +  ++  G+    + +  AR V   
Sbjct: 12  VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 68

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+ HYV D  + F   VI  F   Y+ G TP PC+ CN  VK   LL+  +   AD LA
Sbjct: 69  LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 128

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  +   ++G     + R  D ++DQSYFL+    + L  L FPLG   K+ +  
Sbjct: 129 TGHYAR--IVSDENGT---HLLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 183

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           LA  M L +  + +SQD+CF+  G Y   +          G I+   G+ILG H G+  Y
Sbjct: 184 LATNMKLPV-SQKESQDVCFIPDGDYKSFLATRMGFT--PGKILDTTGKILGEHQGLPLY 240

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           T+GQR+GLG+A  E LFV  ++ +++ + V   + L   RI L    W          +D
Sbjct: 241 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIW----RESGIPLD 296

Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                VK+R    P  V  + ++ D   ++          GQA V Y  D     VLGGG
Sbjct: 297 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 352

Query: 382 IISG 385
           II  
Sbjct: 353 IIES 356


>gi|33634533|emb|CAE20519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 431

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 197/391 (50%), Gaps = 38/391 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   +
Sbjct: 50  LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 102

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+++LS  
Sbjct: 103 IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWA 162

Query: 134 R-QLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           + +L    +ATGHY R R             D   R  + R +D  +DQSYFL+  +Q  
Sbjct: 163 KKELQLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLLRGLDQNKDQSYFLYDLSQDV 222

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243
           L  + FPLG++ K   R  A   GL  A K +SQD+C     G     +       A +G
Sbjct: 223 LAKVIFPLGELTKAETRQEAERYGLRTAKKEESQDLCLADHYGSMKAFLDNYLP--ARQG 280

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR        
Sbjct: 281 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNC 340

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352
            +  +NW+                V++R    PV   +   +               + F
Sbjct: 341 VVGAVNWISMA----PPSTTINVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTF 396

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  +  GQA VFY +D+    VLGGG+I
Sbjct: 397 NEKQFSITPGQAAVFYAADT----VLGGGLI 423


>gi|297569866|ref|YP_003691210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925781|gb|ADH86591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 358

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 187/370 (50%), Gaps = 29/370 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV VAMSGGVDSSV AAL+ + G +V GV ++L        +               V
Sbjct: 10  QKRVAVAMSGGVDSSVTAALMLQAGAEVEGVFMRLAQPGIEDHQ----------RRVEGV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +   V D  E F   V+ PF ++Y AG TP PCV CNR +KF  LL      G D
Sbjct: 60  AAHLGIPLTVLDLAEPFGQKVLQPFVAAYLAGLTPNPCVFCNRQIKFGLLLEAMLSRGVD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY+R    +  D    R++CR +D  +DQSYFL    ++ L  + FPLG+ +K  
Sbjct: 120 FLATGHYVRLTPALPLD----RLLCRGLDPRKDQSYFLCRLKREVLPRILFPLGEKRKTE 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDIVHLNGQILG 254
           V +LA  +GL      +SQD+CF+ +    D +       A       G IV  +G+ +G
Sbjct: 176 VYELAASLGLSGRHGPESQDVCFLGEQTVADFLAAYAGQEAPAEGPAGGLIVTTDGREVG 235

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH G+  YTIGQRRGLG+    P +VV LD  S+RV+VG  E L   +I L  +NWL   
Sbjct: 236 RHRGVFRYTIGQRRGLGIPDDTPYYVVALDAQSNRVVVGKPEDLLRRQIRLGALNWL--- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
              D      +  V++R    P P  +    DG   +DF++ +   A GQ   FY  D  
Sbjct: 293 --IDPPRLPARFSVQLRHRHRPAPALLTPAADGTFTLDFDQPQRAPAPGQYAAFYQED-- 348

Query: 374 EARVLGGGII 383
             ++LGGG I
Sbjct: 349 --QLLGGGEI 356


>gi|118473593|ref|YP_886701.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166235065|sp|A0QUW3|MNMA_MYCS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118174880|gb|ABK75776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 356

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 194/371 (52%), Gaps = 22/371 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L +S   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDASDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ +RF++ VI  F  SYA GETP PCV CN  +KFS L +    LG 
Sbjct: 60  VADILGIPFYVWDFADRFKDDVIDDFVESYARGETPNPCVRCNERIKFSALAARALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R       DG+    + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARLS-----DGR----LRRAVDADKDQSYVLGVLTAEQLRHALFPIGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A E GL +A+K DS DICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QIRAEAAERGLAVAEKPDSHDICFIPTGDTKAFLGARIG--VRPGAVVDGSGTVLAEHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G P +V  +D  +  V VGP E LEV  +      +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGADGRPRYVTAIDAETGTVRVGPAEDLEVWELTGERPVFTSGV 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                     +C V++R+         +  D  + +       GVA GQ  V Y  D + 
Sbjct: 289 ----EPGGPIECQVQVRAHGGITDTVAELRDGKLELSLRAPLRGVAPGQTMVLYRPDPDG 344

Query: 375 ARVLGGGIISG 385
             V+    I+ 
Sbjct: 345 DEVIASATITR 355


>gi|295086500|emb|CBK68023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 361

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       
Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|205822245|sp|A2CB44|MNMA_PROM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 409

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 198/391 (50%), Gaps = 38/391 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   +
Sbjct: 28  LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+ +LS  
Sbjct: 81  IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWA 140

Query: 134 -RQLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            ++     +ATGHY R R             D   R  + R +D  +DQSYFL+  +Q  
Sbjct: 141 EKERQLHRVATGHYARIRHREDPEPQQALPGDSSGRHQLLRGLDQNKDQSYFLYDLSQDV 200

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243
           L  + FPLG++ K   R  A   GL  A K++SQD+C     G     +       A +G
Sbjct: 201 LAKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCLADHYGSMKAFLDNYLP--ARQG 258

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR        
Sbjct: 259 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 318

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352
            +  +NW+       A+       V++R    PV   +   +               + F
Sbjct: 319 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 374

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  +  GQA VFY +D+    VLGGG+I
Sbjct: 375 NEEQFSITPGQAAVFYAADA----VLGGGLI 401


>gi|257462397|ref|ZP_05626811.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
 gi|317060061|ref|ZP_07924546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313685737|gb|EFS22572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 350

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 200/378 (52%), Gaps = 30/378 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           + +++       +RV +A+SGGVDSS VA LLK+ GYD+ GVT++              C
Sbjct: 1   MVNMEYRAENAKIRVGIALSGGVDSSTVAYLLKKRGYDIFGVTMR-------------TC 47

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +D  DA++VC  + + HYV D  E F   V+  F   Y  G TP PC+ CNR +KF  
Sbjct: 48  HEED-ADAKKVCQDLGIQHYVLDLTEDFSEKVMDYFVEEYMQGRTPNPCMVCNRHIKFGK 106

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL    + GA  +ATGHY +       DG     +    D  +DQ YFL    +++L ++
Sbjct: 107 LLDFILEQGAQYMATGHYTKLV-----DG----HLSVGDDGGKDQVYFLSQVPKEKLKNI 157

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247
            FP+GD++K  VR+LA+E+G+ +  K DSQ+ICFV+ G+    + ++    +  +G+IV 
Sbjct: 158 IFPVGDLEKRQVRELAKELGVRVHAKKDSQEICFVEDGQLKQFLIEKTKGKVYNKGNIVD 217

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
            +G+ILG+HNG+  YTIGQR+GLG++   PL+VV L+   + +IVG  E L   ++    
Sbjct: 218 RDGKILGKHNGLSFYTIGQRKGLGISSESPLYVVELNSERNEIIVGNNEDLMREKLIAER 277

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACV 366
            N       E+  +   +C+ K RS        ++     + V F       V  GQ  V
Sbjct: 278 CNLFLVEHLEE--LHDMECYAKTRSRDSLHACRLEVVGKEIVVHFINNRVRAVTPGQGVV 335

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY     + +V+ GG I 
Sbjct: 336 FYN---EQGQVIAGGFIK 350


>gi|315920277|ref|ZP_07916517.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694152|gb|EFS30987.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 361

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAVRMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q+ L    FPLGD  K 
Sbjct: 110 AWIATGHYSRL-----EEKNGYTYIVAGDDDKKDQSYFLWRLGQEVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + L    +   +       
Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAEQ----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDEQELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|296171256|ref|ZP_06852660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894224|gb|EFG73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 358

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 196/371 (52%), Gaps = 20/371 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           M+++ AMSGGVDSSV AA +   G+DV+GV L L ++  A +     CC+ +D  DA RV
Sbjct: 1   MKILAAMSGGVDSSVAAARMVDAGHDVVGVHLALSSAPGALRTGSRGCCSKEDASDASRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ ERF+  VI  F SSYA GETP PCV CN+ +KFS L +    LG D
Sbjct: 61  ADVLGIPFYVWDFAERFQADVIDDFVSSYARGETPNPCVRCNQRIKFSALSAKALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R              + R +D ++DQSY L   T +QL    FP+GD  K  
Sbjct: 121 TVATGHYARLS---------GGRLRRAVDHDKDQSYVLAVLTAEQLRHATFPIGDTPKAQ 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R  A   GL +A K DS DICF+  G     +    A     G +V  +G +L +H+G+
Sbjct: 172 IRAEAARRGLAVAAKPDSHDICFIPSGDTRAFLGERIA--VRRGAVVGADGAVLAQHDGV 229

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +T+GQR+GLG+A     G P +V  +D +++ V VG    L+V  +  RE  +     
Sbjct: 230 HGFTVGQRKGLGIAGPGPDGRPRYVTEIDADTATVRVGDAADLDVLELRGREPVFTAGRP 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               V    +C V++R+  +  P   +   D + V       GVA GQ  V Y  D +  
Sbjct: 290 PSGLV----ECAVQVRAHGETAPAVAELVGDELIVRLRVPLRGVARGQTLVLYRPDPDGD 345

Query: 376 RVLGGGIISGS 386
            VLG   I+G+
Sbjct: 346 EVLGSATIAGT 356


>gi|239982445|ref|ZP_04704969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces albus J1074]
 gi|291454292|ref|ZP_06593682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces albus J1074]
 gi|291357241|gb|EFE84143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces albus J1074]
          Length = 381

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/394 (36%), Positives = 199/394 (50%), Gaps = 24/394 (6%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SC 67
            S   +  P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   C
Sbjct: 4   TSPRTENPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGC 62

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           C  +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+
Sbjct: 63  CTIEDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFA 122

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            LL     LG D + TGHY        +DG   R + R  D+ +DQSY L    ++QL  
Sbjct: 123 ALLDKALALGFDAVCTGHYATV--VTREDGS--RELHRASDMAKDQSYVLGVLDERQLAH 178

Query: 188 LRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             FPLGD    K+ +R  A   GL +A K DS DICF+  G     +         EGDI
Sbjct: 179 ALFPLGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLAGRLGTA--EGDI 236

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVH 301
           +   GQ +G H G   YTIGQR+GL +      G+P +V+ +    + V VGP  +L+V 
Sbjct: 237 LDEAGQKVGTHEGAYGYTIGQRKGLRIGTPAADGKPRYVLDISPVDNTVTVGPAAALDVT 296

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
            +      W G            +   ++R+  +  PV  +  +  + V F++   GVA 
Sbjct: 297 GLTAIRPRWCG-----TPPEGSGRYTAQLRAHGEETPVTAEVREGELTVTFDEPVRGVAP 351

Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
           GQA V Y      +RV+G   I+ ++R+ AV  +
Sbjct: 352 GQAVVLYDG----SRVVGSATIAATRRAGAVPAA 381


>gi|124023662|ref|YP_001017969.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963948|gb|ABM78704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 431

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 198/391 (50%), Gaps = 38/391 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P + RV V +SGGVDSS+ AALL   G+ V G+TL L +       KG+CC+   +
Sbjct: 50  LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 102

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ + + H+V D    F+  ++      Y  G TPLPC  CNR+VKF+ +LS  
Sbjct: 103 IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWA 162

Query: 134 -RQLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            ++     +ATGHY R R             D   R  + R +D  +DQSYFL+  +Q  
Sbjct: 163 EKERQLHRVATGHYARIRHREDPEPQQALPGDSSGRHQLLRGLDQNKDQSYFLYDLSQDV 222

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243
           L  + FPLG++ K   R  A   GL  A K++SQD+C     G     +       A +G
Sbjct: 223 LAKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCLADHYGSMKAFLDNYLP--ARQG 280

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           +IV  +G+++G H+GI ++TIGQR+GLGVA  EPL VV LD  ++RVIV PR        
Sbjct: 281 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 340

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352
            +  +NW+       A+       V++R    PV   +   +               + F
Sbjct: 341 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 396

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + +  +  GQA VFY +D+    VLGGG+I
Sbjct: 397 NEEQFSITPGQAAVFYAADA----VLGGGLI 423


>gi|66472552|ref|NP_001018435.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Danio rerio]
 gi|82192768|sp|Q503J2|MTU1_DANRE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|63101232|gb|AAH95308.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Danio
           rerio]
 gi|182891436|gb|AAI64518.1| Trmu protein [Danio rerio]
          Length = 416

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/388 (29%), Positives = 177/388 (45%), Gaps = 36/388 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV AMSGGVDSSV A LLKR GY V GV ++ ++S+   + KG C + +D  DA +VC 
Sbjct: 6   HVVCAMSGGVDSSVSALLLKRMGYHVTGVFMKNWDSQ---EEKGLCSSDRDCEDAYKVCK 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + + V       Y  G TP P + CN+ +KF          LGAD 
Sbjct: 63  MLDIPFHEVSYVKEYWHEVFSNLLWEYERGRTPNPDIICNKHIKFKHFYQYAVNTLGADA 122

Query: 141 LATGHYIRSRLYVGD------------------DGKRRRIMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+     +                  + ++   + +  DL +DQ++FL   +Q
Sbjct: 123 MATGHYARTSQEDEEVFQQKLTEAPKSLFRDRFEIRKPVRLYQGADLLKDQTFFLSQISQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPL  + K  V+ +A E G   +  K +S  ICF+ +  + + +         
Sbjct: 183 DALRHTLFPLAGLTKGYVKKIAAEAGFQHVLKKKESMGICFIGKRDFENFILEYLE--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G+ V + +GQI+G+H G    T+GQR  +G    +  FVV  D  ++ V V P     +
Sbjct: 241 PGNFVSIEDGQIMGKHKGWFTLTLGQRARIG-GRADAWFVVDKDVTTADVFVCPSTFHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           L    +     +W+ +    + V      C     +     P  V  N DG V+V  ++ 
Sbjct: 300 LFRDTLQTDRFHWIAEEPPAELVHTQMMDCHFCFNNRMPLTPCTVTLNLDGSVWVMVKEP 359

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
             G+A+GQ  V Y         LG G I
Sbjct: 360 MRGMATGQFAVLYKG----HECLGSGKI 383


>gi|205829196|sp|B1WC37|MTU1_RAT RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|171846652|gb|AAI61991.1| Trmu protein [Rattus norvegicus]
          Length = 441

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/410 (28%), Positives = 183/410 (44%), Gaps = 56/410 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  D  +DQ++FL   +Q
Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR------- 234
             L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +      + +       
Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQVSVSDVS 242

Query: 235 ---------------INAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPL 278
                                  G  + + + ++LG H G   YT+GQR  +   + EP 
Sbjct: 243 GGLLWAGAPVVMKPVFQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKIS-GLSEPW 301

Query: 279 FVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQ 334
           +VV  D     V+V P     +L    +    ++W+ +      V D   +C  + R   
Sbjct: 302 YVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQM 361

Query: 335 DPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             VP  +  N DG V+V   K+  G+A GQ  VFY  +      LG G I
Sbjct: 362 ALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGE----ECLGSGKI 407


>gi|163785075|ref|ZP_02179792.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879656|gb|EDP73443.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 17/365 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGGVDSSV A LLK  GYDV G+TL+L +   +   +  CC+ QDV DA +V 
Sbjct: 1   MKVAVGMSGGVDSSVAALLLKEKGYDVTGITLKLSSIENSCDIQ-VCCSPQDVKDAEKVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
             + + HY  D+E+ F+N VI  F +    G+TP PC  CNR +K   L        GAD
Sbjct: 60  SFLGIEHYTIDWEKDFKNKVIDYFVNELKEGKTPNPCSVCNREIKTGRLYKYVNLVFGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHYI++    G     ++++ R  DL++DQSYF+    ++ L  L FPLGD  KE 
Sbjct: 120 FLATGHYIKTVEING-----QKLIKRGKDLKKDQSYFMALVEKEVLNGLLFPLGDFTKEE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR +A + GL ++ K DS +ICF       + ++        +GDI+H++G+ LG+H G+
Sbjct: 175 VRKIAEKYGLPVSQKKDSFEICFTAGKTPAEYIEENKIFELQKGDIIHISGKKLGKHRGL 234

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YTIGQRRGLGV   +PL+V+  +  ++ VIV     L    +   + N+       + 
Sbjct: 235 AHYTIGQRRGLGVRWHKPLYVIDKNVENNTVIVAEDNYLLTDTVKAEDFNFHLPIEKWEG 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            ++     V+ R  Q PV V      +G+  +  ++ +V  ASGQ    Y  D     +L
Sbjct: 295 NLN-----VQGRYRQKPVEVEDFSYKNGILEIKLKQPQVKFASGQILAVYKDDI----LL 345

Query: 379 GGGII 383
           GGGII
Sbjct: 346 GGGII 350


>gi|227548033|ref|ZP_03978082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079887|gb|EEI17850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 359

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/373 (38%), Positives = 193/373 (51%), Gaps = 22/373 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDSSV AA L   G+DV+GV L L    +A++     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSSVAAARLVDAGHDVVGVHLALSRDPQATRESARGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SY  GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKAEVIDNFVWSYDNGETPNPCLRCNEKIKFAALLDRALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY      V D+G     + R  D  +DQSY L   T+ +L    FP+GD +K  
Sbjct: 121 AVATGHYA----IVDDEGN----LRRSADPLKDQSYVLGVLTRAELDRCIFPVGDTEKPQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A+  G   A K DS DICF+  G     + R        G IV  +G  L  H+G 
Sbjct: 173 IREEAKRHGFSTATKPDSYDICFIPDGNTQAFLGRSIG--MRPGMIVDADGTELKEHDGA 230

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             YTIGQRRGL +    A G+P +V  +D  +  V VGPR++LEV  I    +      +
Sbjct: 231 FQYTIGQRRGLDLRVPAADGQPRYVTDIDAATGVVTVGPRQALEVREIRADRL-----KV 285

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSN 373
              A+   F   V+IR+    V    +   D + +       GVA GQA V Y    D  
Sbjct: 286 LHPAMNGTFTANVQIRAHGGVVGCDARVEGDEMVLALHSPLEGVARGQAAVLYLPDPDGL 345

Query: 374 EARVLGGGIISGS 386
              VLG G I  +
Sbjct: 346 GDVVLGSGTICHT 358


>gi|118467226|ref|YP_883033.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium 104]
 gi|118168513|gb|ABK69410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium avium 104]
          Length = 352

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 195/368 (52%), Gaps = 22/368 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ E+F+  VI  F S+YA GETP PCV CN+ +KFS L +    LG D +ATG
Sbjct: 60  IPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGFDAVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R              + R +D ++DQSY L   + +QL    FP+GD  K  +R+ A
Sbjct: 120 HYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKPQIREEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              GL +A+K DS DICF+  G     +          G +V+ +G +L  H+G+  +TI
Sbjct: 171 ARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVNADGTVLAEHDGVHGFTI 228

Query: 265 GQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           GQR+GLG+A     G P +V  +D +++ V VG    L+V  +  R + +        A 
Sbjct: 229 GQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSGT----AP 284

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              F+C V++R+  +      +   D + V       GVA GQ    Y  D +   VLG 
Sbjct: 285 SGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPDGDEVLGS 344

Query: 381 GIISGSKR 388
             I+G+ R
Sbjct: 345 ATIAGTSR 352


>gi|119357892|ref|YP_912536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeobacteroides DSM 266]
 gi|205813544|sp|A1BI85|MNMA_CHLPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119355241|gb|ABL66112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 357

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 201/372 (54%), Gaps = 25/372 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCD 81
           VVV +SGGVDS+V A LL + GY V+G+ +++ ++         S     D  D +    
Sbjct: 5   VVVGISGGVDSAVAACLLMKQGYRVLGLNIRILDTPDEHPSLAPSPLLISDHADYQ---- 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 +  +   RF   VI  F + Y AG+TP PC+ CN+ +K+  LL   R LGA+ +
Sbjct: 61  ---FPVFSLNLSARFSQEVIRYFQADYLAGKTPNPCMVCNKKIKWHGLLEGARLLGAERI 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+    G     R  + + +D ++DQSYFL+  +Q  L    FPLG++ KE VR
Sbjct: 118 ATGHYARTASLDG-----RVRLYKGLDPQKDQSYFLWMLSQNDLNKTCFPLGELAKEKVR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258
           +LAR  G+  A+K +SQ+ICFV    Y   ++    G+  +   GDIV  NG++LG+H G
Sbjct: 173 ELARTFGVRAAEKKESQEICFVPHDDYCRYLELAVPGLKEKVAGGDIVDENGKVLGKHRG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG++  EPL+V  LD+ ++ V  G + SL+   + +  +NW+ +   ++
Sbjct: 233 YPFYTIGQRRGLGLSSTEPLYVTALDQENNCVHTGNKSSLDTRSLTVSGLNWINNKSLDE 292

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V    + F KIR      P  +    DG   + F  ++  VA GQA VFY  +     V
Sbjct: 293 PV----EAFGKIRYRDRETPCTIAPLPDGQATITFHTAKHAVAPGQAAVFYHDE----EV 344

Query: 378 LGGGIISGSKRS 389
           LGGG IS   R 
Sbjct: 345 LGGGFISAVNRD 356


>gi|94266357|ref|ZP_01290057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
 gi|93453040|gb|EAT03525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
          Length = 389

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 194/399 (48%), Gaps = 41/399 (10%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S+A   N++ +       +V VAMSGGVDSSV AALL++ G +V GV ++L      + R
Sbjct: 5   SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 64

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           +           A  V D + +   V D  + FR  V+ PF  +Y AG TP PCV CNR 
Sbjct: 65  QR----------AAAVADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 114

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +KF  LL      G ++LATGHY+R            R +CR +D  +DQSYFL     +
Sbjct: 115 IKFGLLLETLLAQGVELLATGHYVRLLPAA----TGGRRLCRGLDPGKDQSYFLCRLAAE 170

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN------- 236
           +L  L FPLGD  K  V  LA  +GL     S+SQDICF+ +    D +           
Sbjct: 171 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDICFLGKQSVGDFLAAHGPPGGAEG 230

Query: 237 -----------AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
                         A +G IV ++G+ LG+H G+  YT+GQRRGLG+    P +VV LD 
Sbjct: 231 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 290

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             + V+VG  E L+   I L ++NWL             +  V++R    P P  ++   
Sbjct: 291 ARNLVVVGKPEDLQRRLIRLADLNWLTTA----PPPLPARFAVQLRHRHRPAPALIEPAA 346

Query: 346 DG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           DG   V F++ +   A GQ    Y  +    ++L GG I
Sbjct: 347 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEI 381


>gi|94263083|ref|ZP_01286902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
 gi|93456626|gb|EAT06734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium MLMS-1]
          Length = 443

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/399 (34%), Positives = 195/399 (48%), Gaps = 41/399 (10%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S+A   N++ +       +V VAMSGGVDSSV AALL++ G +V GV ++L      + R
Sbjct: 59  SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 118

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           +           A  V D + +   V D  + FR  V+ PF  +Y AG TP PCV CNR 
Sbjct: 119 QR----------AAAVADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 168

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +KF  LL +    G ++LATGHY+R            R +CR +D  +DQSYFL     +
Sbjct: 169 IKFGLLLEILLAQGVELLATGHYVRLLPAA----TGGRRLCRGLDPGKDQSYFLCRLAAE 224

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN------- 236
           +L  L FPLGD  K  V  LA  +GL     S+SQD+CF+ +    D +           
Sbjct: 225 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDVCFLGKQSVGDFLAAHGPPGGAEG 284

Query: 237 -----------AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
                         A +G IV ++G+ LG+H G+  YT+GQRRGLG+    P +VV LD 
Sbjct: 285 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 344

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             + V+VG  E L+   I L ++NWL             +  V++R    P P  ++   
Sbjct: 345 ARNLVVVGKPEDLQRRLIRLADLNWLTTA----PPPLPARFAVQLRHRHRPAPALIEPAA 400

Query: 346 DG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           DG   V F++ +   A GQ    Y  +    ++L GG I
Sbjct: 401 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEI 435


>gi|300858284|ref|YP_003783267.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685738|gb|ADK28660.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206004|gb|ADL10346.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis C231]
 gi|302330557|gb|ADL20751.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276239|gb|ADO26138.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis I19]
          Length = 372

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/379 (38%), Positives = 205/379 (54%), Gaps = 19/379 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G++V+GV L L    +  +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F SSY AGETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY + ++   G DG     + R +D E+DQSY L   +++++    FP+GD  K 
Sbjct: 121 AVVTGHYAQLTQPEDGGDG----YLRRAIDPEKDQSYVLGVLSEKEIAHCMFPVGDTVKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   G  +A K DS DICF+  G     + R        G IV   G+ L  H+G
Sbjct: 177 KIREEAAAQGFSVAKKPDSYDICFIPDGNTQAFLGRHIGL--RPGMIVDTEGRALKEHDG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G+P +V  +D  +  V VG R+ L V +IY   + +L   
Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTDIDAATGTVTVGSRDDLSVSQIYADRLKYLHPA 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDS 372
           L  D     F   V++R+    VP  V  +  +D + +   K   GVA GQA V Y  D+
Sbjct: 295 LSGD-----FSAEVQVRAHGSVVPCHVSVDSHNDTMTITLHKPLSGVARGQAAVIYLPDA 349

Query: 373 NEARVLGGGIISGSKRSDA 391
               VLG G I  +++S +
Sbjct: 350 GGDIVLGSGTIYSTQKSPS 368


>gi|110596963|ref|ZP_01385253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium ferrooxidans DSM 13031]
 gi|110341650|gb|EAT60110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium ferrooxidans DSM 13031]
          Length = 361

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 199/372 (53%), Gaps = 25/372 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDAR 77
           +  +VVV +SGGVDS+  A LLK+ GY V G+ +++ +S   +   + S     D  D +
Sbjct: 3   EQKKVVVGISGGVDSATTACLLKKAGYAVTGLNIRVLDSLEDSPSLQPSPLVISDHPDFQ 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +     +   +FR+ VI  F + Y  G TP PC+ CN+ +K+  L    + L 
Sbjct: 63  -------IPVLTLNLSRKFRDDVITYFHNDYLGGHTPNPCMVCNKKIKWFGLFEGLKLLE 115

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGH+  +    G     R  + + +D E+DQSYFL+  +Q  L     PLG+M K
Sbjct: 116 ADFIATGHFASTSFSDG-----RYRLYKGVDPEKDQSYFLWMLSQSDLAKTLLPLGEMVK 170

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
             VR LARE G+  A+K +SQ+ICFV Q  Y   ++    G+A +   G+IV   G ++G
Sbjct: 171 PEVRRLAREFGVRAAEKKESQEICFVPQDDYCSYLEGAIPGLAEKVSGGEIVDEAGTVIG 230

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQRRGLGVA   PL+V  +D   +R+ VG + +LE  ++    +NW+G  
Sbjct: 231 KHRGYPFYTIGQRRGLGVAAKVPLYVTEIDPEHNRIHVGQKSALETRKLVASGLNWIGI- 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              D V        KIR      P  ++   D+ V V F+  + GV++GQA VFY     
Sbjct: 290 ---DGVNAPVTALGKIRYRDKETPCTIEPLADNEVAVAFDAPKSGVSTGQAAVFYR---- 342

Query: 374 EARVLGGGIISG 385
           E+ VLGGG I+ 
Sbjct: 343 ESEVLGGGFITK 354


>gi|315185969|gb|EFU19733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6578]
          Length = 376

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/390 (32%), Positives = 190/390 (48%), Gaps = 19/390 (4%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+ +        D+    +  R+VVAMSGGVDSSV A LL   G +V+G+T    N+   
Sbjct: 1   MIHTSEHHTPFQDIRDTRRPRRLVVAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAE 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              +G     ++   AR V   + + H+V +  + + + V+      Y +G TP PCV C
Sbjct: 61  VDHEG---FSEEARAAREVASHLGIEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLC 117

Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           NRT+KF  L+   R+ L AD +ATGHY R  +    D +    + R     ++QSYFL  
Sbjct: 118 NRTLKFGHLVRYAREVLRADGIATGHYARIYV----DAEGCVHLLRGKAGTKEQSYFLAQ 173

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAG 238
           T  + L    FPLGD  K  +R  AR  G+  A++ +SQD+CF   G ++ + ++     
Sbjct: 174 TRPEDLRHAYFPLGDQTKNEIRTYARHHGIPTAERPESQDVCFNTTGLRFGEFLQEFFEE 233

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ES 297
               G I+   G +LGRH GI  +TIGQRRGLGVA+G P++V  +D   + VIV  R E+
Sbjct: 234 GGESGPILDERGNVLGRHRGIHVFTIGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEA 293

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357
           L    +    +NW              +   +IR +    P  +    D + V F + + 
Sbjct: 294 LLHRVVEAAGVNWFA-----PPPPRPMEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQR 348

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSK 387
            V  GQ  V Y  D     VL  G I  ++
Sbjct: 349 AVTPGQLLVAYVGD----EVLCSGFILQTE 374


>gi|167765362|ref|ZP_02437475.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC
           43183]
 gi|167696990|gb|EDS13569.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC
           43183]
          Length = 361

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 33/378 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + N  + RV+V MSGG+DS+    +L+  GY+++G+T+ ++ +  A              
Sbjct: 6   NMNKSEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVWGNEPAE------------- 52

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR + D++ + H+V D  E FR  ++  F   Y  G TP PCV CN   KF  L     
Sbjct: 53  -ARNLADSMGIEHHVADEREAFRQIIVQNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 111

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L    +ATGHY R      ++  R+  +    D ++DQSYFL+   Q  L    FPLG 
Sbjct: 112 KLNCRYIATGHYTRL-----EEQNRKIYIVAGDDDKKDQSYFLWRLGQDVLRRCLFPLGT 166

Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNG 250
             K  VRD  R+ G    A++ +S ++CF+ +G Y D ++  +  I      G  V+  G
Sbjct: 167 YTKMQVRDYLRDKGYAPKAEEGESMEVCFI-KGDYRDFLREHSPEIDNEVGPGWFVNSEG 225

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N 
Sbjct: 226 VKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAEYMLAEQDNL 285

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           + +G     V    +  V+IR    P+P  V+R +DG + V FE     +A GQ+ VFY 
Sbjct: 286 IDEG----EVFGSGELTVRIRYRSKPIPCSVKRLEDGRLLVHFETEASAIAPGQSAVFYI 341

Query: 370 SDSNEARVLGGGIISGSK 387
                 RV+GG  I+  +
Sbjct: 342 G----KRVVGGSFIASQR 355


>gi|293370352|ref|ZP_06616907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634573|gb|EFF53107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 361

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       
Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEK----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|262408193|ref|ZP_06084740.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294806750|ref|ZP_06765577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262353745|gb|EEZ02838.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294446032|gb|EFG14672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 361

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +  E   G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       
Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|126434444|ref|YP_001070135.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. JLS]
 gi|166235066|sp|A3PXL7|MNMA_MYCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126234244|gb|ABN97644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. JLS]
          Length = 359

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 195/372 (52%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D +++  YV+D+ +RF+  VI  F +SY  GETP PCV CN  +KFS L      LG 
Sbjct: 60  VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+    + R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DALATGHYARLS-----DGR----LRRAVDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A E GL +ADK DS DICF+  G     +          G +V   G  L  H G
Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSGDTRAFLGARIG--VRRGAVVDAGGTKLAEHEG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G+P +V  +D  +  V VG  E L+V R+      +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVSRLTGERPVFTSGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            F   V    +C V++R+           +   + V+      GVA+GQ  V Y  D   
Sbjct: 289 AFGGPV----ECQVQVRAHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDPEG 344

Query: 375 ARVLGGGIISGS 386
             VL    ISG+
Sbjct: 345 DEVLASATISGA 356


>gi|68536405|ref|YP_251110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium K411]
 gi|123650729|sp|Q4JUL5|MNMA_CORJK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68264004|emb|CAI37492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium K411]
          Length = 395

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/389 (35%), Positives = 195/389 (50%), Gaps = 38/389 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRVV AMSGGVDS+V A+     G++VIGV L L  S +A       CC+ +D  DARRV
Sbjct: 1   MRVVAAMSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL  +  LG D
Sbjct: 61  ADKLGIPFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R    V         M R +D  +DQSY L   T +QL    FP+GD  K  
Sbjct: 121 AVVTGHYARLHDGV---------MRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A++ G  +A K DS DICF+  G+    + +        G +   +G  +  H+G+
Sbjct: 172 IREEAKDHGFGVASKPDSHDICFIPDGQTQAFLGKKIGL--RPGLMKDQDGSTVAEHDGV 229

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +TIGQR+GLG+      G+P +V  +D  +  V +G R+ L V  I    +  L   +
Sbjct: 230 YGFTIGQRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRLDPAV 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------------------GVYVDFEKSEV 357
                   F+C V++R+    VP   +  DD                   + +D  +   
Sbjct: 290 H----GREFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEDESPWRLELDLHEPLQ 345

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
           GVA GQA V Y  D++   +LG G I  +
Sbjct: 346 GVARGQAAVVYQPDADGDILLGSGTIRAT 374


>gi|298384831|ref|ZP_06994390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298261975|gb|EFI04840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 362

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 183/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AYIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKI 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-RGDYRDFLREQCPELDTEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   +       
Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQ----DRI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   VA GQ+ VFY     
Sbjct: 280 VDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAVAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|85057877|ref|YP_456793.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster
           yellows witches'-broom phytoplasma AYWB]
 gi|123518066|sp|Q2NIM9|MNMA_AYWBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84789982|gb|ABC65714.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster
           yellows witches'-broom phytoplasma AYWB]
          Length = 378

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 27/381 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVY 74
            +VVV +SGGVDS+V A LLK+ GY V  V ++ ++S      +G+      C    D  
Sbjct: 2   TKVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICPQELDYK 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-T 133
           DA +V + + +  +  D+ E +   V + F  ++    TP P + CN  +KF   +   T
Sbjct: 62  DALKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYVT 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L    +A GHY         + K    +   +D  +DQ+YFL     +QL ++ FPLG
Sbjct: 122 TKLAPRYIAMGHYANIIYETFSEQKLFPQLACAVDQNKDQTYFLSQLATKQLQNILFPLG 181

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K+ VR +A E  L  A K DS  ICF+ +  +F  +       A +GDI  L+G  L
Sbjct: 182 NLTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLSNYLP--AQKGDIKTLDGTFL 239

Query: 254 GRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
             H G++ YTIGQR+ LG+      +P FVV     ++ + V        L   +  + +
Sbjct: 240 AHHKGVMYYTIGQRKNLGLGDFSSQKPWFVVGKHLQTNTLYVEQGNTHPYLYSDKALISD 299

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366
           I W                  K+R  Q    V +   D + + + + ++   V  GQ C 
Sbjct: 300 IVW-------RGKKTNLHLQAKMRYRQPNQDVILTWIDQNTLEIYYPQTIKAVTPGQICA 352

Query: 367 FYTSDSNEARVLGGGIISGSK 387
           FY ++       G G+I    
Sbjct: 353 FYNNNI----CCGAGVIKEVY 369


>gi|284032792|ref|YP_003382723.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kribbella flavida DSM 17836]
 gi|283812085|gb|ADB33924.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kribbella flavida DSM 17836]
          Length = 372

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 144/388 (37%), Positives = 191/388 (49%), Gaps = 24/388 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA +   G++V+GV L L +    S R G   CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARMAEAGHEVVGVHLAL-SRNPQSYRSGARGCCTIEDSRDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERF   V+  F + YAAG TP PC+ CN  VKFS +L     L  
Sbjct: 60  AADVIGIPFYVWDLAERFHADVVEDFVAEYAAGRTPNPCLRCNEKVKFSAVLERALALDF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +       +    R + R +D  +DQSY L   TQ+QL    FPLGD  K 
Sbjct: 120 DAVATGHYAQIV-----ETPAGRELHRAVDQAKDQSYVLGVLTQEQLRHAFFPLGDTPKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +A K DS DICF+  G     + +        GDIV  NG  LG H G
Sbjct: 175 EIRAEAERRGLSVAAKPDSHDICFIADGNTPGFLSKQLGEA--PGDIVDSNGTKLGEHKG 232

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQR+GL +      G+P FV+ +      V VG RE L V  +   +  W G  
Sbjct: 233 THGFTVGQRKGLRIGTPAADGKPRFVLDISPVDRTVTVGSREELAVESLTASKPRWCGPV 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                  +      ++R+  D V V  +   D V+V F++    VA GQA V Y      
Sbjct: 293 -----PTETLHVKAQLRAHGDEVAVTARVEGDQVFVTFDEPTAAVAPGQAVVLYDG---- 343

Query: 375 ARVLGGGIISGSKRS-DAVEESLLSVIG 401
            RV+G   I    R+  +       V+G
Sbjct: 344 TRVVGSATIDTVARALLSAAPPARRVMG 371


>gi|313149619|ref|ZP_07811812.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138386|gb|EFR55746.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 189/374 (50%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   SNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+    +LG 
Sbjct: 50  LAVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG+  K+
Sbjct: 110 DWIATGHYSRL-----EERNGYIYIVAGDDEKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
           +VRD  RE G +    + +S ++CF+ +G Y D ++     +      G  V   G  LG
Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIGPGWFVSSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N +   
Sbjct: 224 QHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMVAEQDNIVD-- 281

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ED +    +  V+IR    P+P  V+R +DG + V F      +A GQ+ VFY     
Sbjct: 282 --EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RV+GG  I+  +
Sbjct: 337 -RRVIGGAFIASQR 349


>gi|158300718|ref|XP_320574.3| AGAP011960-PA [Anopheles gambiae str. PEST]
 gi|157013296|gb|EAA00244.3| AGAP011960-PA [Anopheles gambiae str. PEST]
          Length = 377

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 177/372 (47%), Gaps = 20/372 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV +SGGVDS+V A LLK+ G++V G  ++ ++        G C   QD  DA+R+C 
Sbjct: 4   RVVVGISGGVDSAVSAYLLKKRGFEVCGAFMKNWD---LIDESGYCSGEQDFEDAQRLCR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
           T+N+     ++ + +   V   F   Y AG TP P + CNR +KF+      R+ LGAD 
Sbjct: 61  TLNIPLEEINFVKDYWVEVFGNFLKDYEAGITPNPDILCNRHIKFNRFFHHARERLGADA 120

Query: 141 LATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY R+         +   +  +    D  +DQ++FL   + + L    FP+G + K
Sbjct: 121 IATGHYARTNFGPFLERYNENEKVRLLMAPDPIKDQTFFLSQISAEALRRTMFPIGALTK 180

Query: 198 ESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
             V+ LA E+GL+  A K +S  ICFV +  +   +          G  V ++ G+ +G+
Sbjct: 181 PQVKRLAIEVGLEAYARKKESMGICFVGKRSFQQFIGEYIE--TKPGPFVDVDSGREVGQ 238

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           H G+ ++T+GQ+  +G    +P +V+   + S+ + V        L    +Y     W+ 
Sbjct: 239 HAGLHHWTVGQKCKIGGC-PQPYYVLRKHRASNVIEVASGHDHPLLYTDMVYTERPVWIN 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                 +     +C  + + ++  V    ++ +   ++V  ++    +  GQ  VFY ++
Sbjct: 298 APPGLSSEGRVVRCEFRFQHTKPLVGCSVIETHGRQLFVKLDRPLRAITPGQYAVFYRNE 357

Query: 372 SNEARVLGGGII 383
                  G   I
Sbjct: 358 ----ECFGSARI 365


>gi|224025546|ref|ZP_03643912.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM
           18228]
 gi|224018782|gb|EEF76780.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM
           18228]
          Length = 361

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 186/373 (49%), Gaps = 27/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          + DAR 
Sbjct: 12  KNNKVLLGMSGGTDSSVAAMLLQDAGYEVTGITFRFYEKDFQTEY---------LEDARH 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + + H  +D  E F   +I  F   Y  G TP+PC  CN  +K+  L  +  + G 
Sbjct: 63  LCEQLGIRHLTYDAREVFEEQIIHYFIQEYMNGRTPVPCTLCNNQLKWPLLKEIADREGI 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G     R  +    D ++DQS+FL+   Q  L    FP+G++ K 
Sbjct: 123 YHLATGHYVRKQTVNG-----RWFIRSGADPDKDQSFFLWGLPQDLLERALFPMGELTKV 177

Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQILGRH 256
            VR++A E G L  A K DS  +CF     Y   +K     G    G+ +   G+ LG+H
Sbjct: 178 RVREIAAERGQLKAARKRDSLGVCFCPM-DYRTFLKSHVPEGQISPGEFLDEEGRKLGQH 236

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDGL 315
            G   YTIGQRRGLG+ + + LFV       +RVIV     +LE   + L + N +    
Sbjct: 237 EGYPFYTIGQRRGLGIWLNKTLFVKETLPEQNRVIVCDNLRALEKQEMLLTDWNLID--- 293

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             +  ++     VKIR  +      V    DG ++V+  +    VA GQA VFY  D   
Sbjct: 294 -PETALNHPDVIVKIRYRKQANRCTVTCTGDGCLHVNLHEPLASVAPGQAAVFYRDD--- 349

Query: 375 ARVLGGGIISGSK 387
             VLGGGII+ S+
Sbjct: 350 -LVLGGGIIATSR 361


>gi|212721228|ref|NP_001131207.1| hypothetical protein LOC100192515 [Zea mays]
 gi|194690872|gb|ACF79520.1| unknown [Zea mays]
          Length = 486

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 178/373 (47%), Gaps = 20/373 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C   +D+  A+ V
Sbjct: 74  PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAV 133

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    + Y  G TP P V CN  +KF   L     LG D
Sbjct: 134 CDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFD 193

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        ++ +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 194 YIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDE 253

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +MGL    + DSQ ICF+ + K+ + V+R       EG I+   +G  LG H G
Sbjct: 254 VRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGE--KEGIILEAESGDYLGIHRG 311

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  +NW  +  
Sbjct: 312 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNC- 369

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +  +   K+R S +     +     + N D + V   + + G+A+GQ   FY+ 
Sbjct: 370 ---GPGNNEQLKCKVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYSE 426

Query: 371 DSNEARVLGGGII 383
           +      LG GII
Sbjct: 427 NV----CLGSGII 435


>gi|256390508|ref|YP_003112072.1| tRNA-specific 2-thiouridylase MnmA [Catenulispora acidiphila DSM
           44928]
 gi|256356734|gb|ACU70231.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Catenulispora acidiphila DSM 44928]
          Length = 358

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 195/374 (52%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA ++  G++V GV L L  +R+A       CC  +D +DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARVRDAGHEVTGVHLALSRNRQALRDGARGCCTIEDSHDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  Y++D  +RF   VI  F + Y AG TP PC+ CN  +KF+ +L   R LG D
Sbjct: 61  ADMLGIPFYIWDMSDRFHEDVIDDFVAEYQAGRTPNPCLRCNEKIKFAAVLDKARALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ATGHY R       DG     + R  D  +DQSY L      QL    FPLGD  K +
Sbjct: 121 VVATGHYARLL-----DGPHGPELHRAADPAKDQSYVLGVLDADQLAHSLFPLGDDTKPA 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A E GL +A K DS D+CF+  G     + +     +  G IV   G+ +G H+G 
Sbjct: 176 VRAEAAERGLYVAKKPDSHDVCFIPDGDTKAYLAKTLGTSS--GPIVDSEGRRVGEHDGA 233

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +TIGQRRGL +      G P +V+ +   ++ V VG  E L+V  +   ++ W G   
Sbjct: 234 WGFTIGQRRGLRIGDPAGDGRPRYVLDISPVTNTVTVGTAEELDVTGLSGIKLRWCGPEF 293

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                +   +C  ++R+  +PVP   +R+  D + V   +   G+A GQA V Y      
Sbjct: 294 -----IGRIECHAQLRAHGEPVPATAERSGPDSIDVVLHEPVRGLAPGQAAVLYDG---- 344

Query: 375 ARVLGGGIISGSKR 388
            RV+G   ++ + R
Sbjct: 345 TRVIGSATVAQTSR 358


>gi|255690530|ref|ZP_05414205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260623984|gb|EEX46855.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 361

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 182/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLDC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG   K 
Sbjct: 110 DWIATGHYSRL-----EEKNGHIYIIAGDDDKKDQSYFLWRLGQDVLRRCIFPLGAYTKI 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   +       
Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTDYMLAEQ----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+   V+R +DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDEQELFQCENLTVRIRYRSRPLACRVRRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -KRVLGGAFIASQR 349


>gi|38233668|ref|NP_939435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|73920122|sp|Q6NHQ7|MNMA_CORDI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|38199929|emb|CAE49597.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium diphtheriae]
          Length = 366

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/377 (38%), Positives = 200/377 (53%), Gaps = 19/377 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L    +  +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F SSY AGETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG     + R +D ++DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPVDGGDG----YLRRSIDPDKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A  MG  +A K DS DICF+  G     + R        G IV  +G  L  H+G
Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGRHIGL--RPGMIVDSDGNELKEHDG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G+P +V  +D  +  V VG RE+L+V  +    + +L   
Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTNIDAATGTVTVGSRENLKVIALTADRLKYLH-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDS 372
               A+   F+  V++R+    V   V  N  DD + V+      GVA GQA V Y  D 
Sbjct: 293 ---PAMTGSFEAEVQVRAHGSVVACSVMVNESDDTMRVELHTPLSGVARGQAAVIYLPDD 349

Query: 373 NEARVLGGGIISGSKRS 389
           +   VLG G I  ++  
Sbjct: 350 DGDIVLGSGTICATEHQ 366


>gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group]
          Length = 488

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 179/373 (47%), Gaps = 20/373 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ V
Sbjct: 77  PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 136

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    + Y +G TP P V CN  +KF   L     LG D
Sbjct: 137 CDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        DD +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 197 YIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDE 256

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +M L   D+ DSQ ICF+ + K+ + V+R      +EG ++    G  LG H G
Sbjct: 257 VRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGE--MEGVLLEAETGDYLGTHRG 314

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  +NW  +  
Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS- 372

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGV--YVDFEKSEVGVASGQACVFYTS 370
                 +  +   K+R S +     V +   +++GV   V   + + G+A+GQ   FY  
Sbjct: 373 ---GPTNNEQLKCKVRHSPEFHDCTVTQEQTSENGVILVVRLSEDDQGLAAGQFAAFYRD 429

Query: 371 DSNEARVLGGGII 383
           +      LG GII
Sbjct: 430 N----LCLGSGII 438


>gi|328794279|ref|XP_003252036.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial [Apis
           mellifera]
          Length = 319

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 158/370 (42%), Gaps = 65/370 (17%)

Query: 31  VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVF 90
           VDSSV A LLK  GYDVIGV ++ ++    +   G C A  D  D +RV D I + +Y  
Sbjct: 1   VDSSVSALLLKEQGYDVIGVFMKNWDDTDDT---GVCTATDDYEDVKRVADQIGIPYYSI 57

Query: 91  DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSR 150
           ++E+ + + V   F + Y  G TP P V CN  +KF   L     L AD +A GHY ++ 
Sbjct: 58  NFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFALNLDADYIAMGHYAKTI 117

Query: 151 LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                D      M RP D  +DQ+YFL    Q Q+  + FPL ++ K             
Sbjct: 118 T----DKNGITHMMRPKDGNKDQTYFLSQLNQNQISRVIFPLANLTKP------------ 161

Query: 211 IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGL 270
                                           GD+V  +G+++G H G++ YTIGQR GL
Sbjct: 162 ------------------------------QSGDMVTPDGKVVGHHAGLMYYTIGQRSGL 191

Query: 271 GVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLFEDAVVDG 323
           G+   +    P FVV  +   +++IV        L    +   ++++       D     
Sbjct: 192 GLGSTKESTAPWFVVGKNLQKNQLIVQQGYDSKLLYATELEASDMSFFTGQPDHDF---K 248

Query: 324 FKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             C  K R  Q  V V V  +   +   V F++    V  GQA V Y  +      LGGG
Sbjct: 249 IHCSAKFRYRQPDVGVTVSYDAAKNKAKVYFDEPARAVTPGQALVLYQGE----ECLGGG 304

Query: 382 IISGSKRSDA 391
            I  + ++D 
Sbjct: 305 NIDCAYQNDR 314


>gi|56808669|ref|ZP_00366393.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus pyogenes M49 591]
          Length = 299

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 162/301 (53%), Gaps = 17/301 (5%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 8   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 65  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY + +     D      M R  D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 125 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 180

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR++A   GL  A K DS  ICF+ +  +   + +     A +G ++ ++G+ +G H
Sbjct: 181 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 238

Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308
            G++ YTIGQR GLG+        +P F V  D + + + VG     E+L  + +    I
Sbjct: 239 AGLMYYTIGQRGGLGIGGQHGGDNQPWFAVGKDLSQNILYVGQGFYHEALMPNSLDASAI 298

Query: 309 N 309
           +
Sbjct: 299 H 299


>gi|159903879|ref|YP_001551223.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9211]
 gi|205816902|sp|A9BBQ7|MNMA_PROM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|159889055|gb|ABX09269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 406

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 200/380 (52%), Gaps = 36/380 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSS+ AALL   G+ V G+TL L       + KGSCC  + + DA  +C+ 
Sbjct: 39  IAVGLSGGVDSSLTAALLVEAGWKVEGLTLWLM------EGKGSCCT-EGLVDAAGICEQ 91

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + + H+V D    F+  V+    + Y  G TPLPC  CNR VKFS +++  R+      +
Sbjct: 92  LKIPHHVVDERSTFQKEVVENLVNGYQEGITPLPCSRCNRFVKFSPMINWARKNRNLKRI 151

Query: 142 ATGHYIR------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           ATGHY R      ++L   D+ K R  + R +D  +DQSYFL+  +Q+ L  + FPLG +
Sbjct: 152 ATGHYARIKHAETNKLNSLDERKNRHQLLRGIDQNKDQSYFLYDLSQEILGHVVFPLGAL 211

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILG 254
            K   R  A   GL  A+K +SQD+C  +  G     +         +G+IV  +G ++G
Sbjct: 212 TKSFTRKEANRYGLRTANKKESQDLCLAEKHGSMKAFLNNYLP--PRKGEIVLTDGLVVG 269

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H+GI ++TIGQR+GLG+A  EPL V+ +  + +RVIVGPR+        + E+NW+   
Sbjct: 270 EHDGIEHFTIGQRKGLGIAWKEPLHVINIQPSLNRVIVGPRDQSGRSNCTVGEVNWVSIS 329

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDFEKSEVGVASGQ 363
               A +      V++R   DPV   +   +               ++FE  +  ++ GQ
Sbjct: 330 ----APMQERLVEVQVRYRSDPVKAKLVPIEPTIKDIKNNRPHRCRIEFENPQFSISPGQ 385

Query: 364 ACVFYTSDSNEARVLGGGII 383
           A VFY  +     VLGGGII
Sbjct: 386 AAVFYKGEV----VLGGGII 401


>gi|253570358|ref|ZP_04847767.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6]
 gi|205814939|sp|Q8A0Y3|MNMA3_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|251840739|gb|EES68821.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6]
          Length = 362

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R     G        +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AYIATGHYSRLEERSG-----HIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKI 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ QG Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   +       
Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQ----DRI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + V F ++   VA GQ+ VFY     
Sbjct: 280 VDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|91085987|ref|XP_972131.1| PREDICTED: similar to tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tribolium castaneum]
          Length = 417

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 20/374 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDS+V A LLK+ GYD+ GV +Q ++       KG C A  D  DA  VCD
Sbjct: 6   KVVVGISGGVDSAVAALLLKKRGYDIQGVFMQNWDIAD---EKGYCSADADYKDAALVCD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++     ++ + + N V       Y  G TP P V CNR +KF+      R +LGAD 
Sbjct: 63  KLDIKLTHVNFVKHYWNEVFSNLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 122

Query: 141 LATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY R+         + ++   +   +D  +DQ++FL    Q+ L    FPLGD+ K
Sbjct: 123 IATGHYARTSFGSYLEHYNPEKGVRLLNAVDWFKDQTFFLCQVNQEALQRTMFPLGDLMK 182

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
             V+ +ARE GL+ IA K +S  ICF+   K+ D ++         GD V ++  +++G+
Sbjct: 183 PEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDD--KPGDFVDVDTAKVVGQ 240

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           HNG+  +T+GQR  L      P FV   D + + + V        L  + I   E +W+ 
Sbjct: 241 HNGVHQWTLGQRARLHSYES-PYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPHWIH 299

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                D      +C  K + ++  V   V +   G+ +   + +  +  GQ  V     S
Sbjct: 300 SQPP-DLQNGVLECDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPGQFAVL----S 354

Query: 373 NEARVLGGGIISGS 386
            +   LGG  I  +
Sbjct: 355 KDGECLGGARIINT 368


>gi|108798844|ref|YP_639041.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. MCS]
 gi|119867959|ref|YP_937911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. KMS]
 gi|123179026|sp|Q1BAU9|MNMA_MYCSS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235067|sp|A1UE63|MNMA_MYCSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|108769263|gb|ABG07985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. MCS]
 gi|119694048|gb|ABL91121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. KMS]
          Length = 359

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 195/372 (52%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+VAMSGGVDSSV AA +   G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D +++  YV+D+ +RF+  VI  F +SY  GETP PCV CN  +KFS L      LG 
Sbjct: 60  VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY R       DG+    + R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DALATGHYARLS-----DGR----LRRAVDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A E GL +ADK DS DICF+  G     +          G +V   G  L  H G
Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSGDTRAFLGARIG--VRRGAVVDAGGTKLAEHEG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+A     G+P +V  +D  +  V VG  E L+V R+      +    
Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVWRLTGERPVFTSGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            F   V    +C V++R+           +   + V+      GVA+GQ  V Y  D   
Sbjct: 289 AFGGPV----ECQVQVRAHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDPEG 344

Query: 375 ARVLGGGIISGS 386
             VL    ISG+
Sbjct: 345 DEVLASATISGA 356


>gi|71893779|ref|YP_279225.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae J]
 gi|123645587|sp|Q4A9Q7|MNMA_MYCHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822182|sp|Q600M2|MNMA_MYCH2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71851906|gb|AAZ44514.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma hyopneumoniae J]
 gi|312601389|gb|ADQ90644.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyopneumoniae 168]
          Length = 372

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 36/390 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--------CCAGQDV 73
           ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S   +   G         C   QD 
Sbjct: 3   KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  +  D+ + + + V       Y +G TP P + CN+ +KF   L   
Sbjct: 63  LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++   AD +A GHY ++     D+G     +    D  +DQSYFL   ++ QL    FPL
Sbjct: 123 QKVHNADFIAMGHYAKT-----DNGN----LYAGADSLKDQSYFLGQLSKSQLQKTIFPL 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
           G++ K  VR +A E+GL  A K DS  ICF+ + K+ D ++      A  G+I+ +   +
Sbjct: 174 GNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQNYIP--AQPGNIIDISTKK 231

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           +LG+H GI+ +TIGQR+G G+  M EP FVV  +     + V P   ++ LE   +  + 
Sbjct: 232 VLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLMAKN 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
            N+L +        +      K R  Q+ +P+ +++  D+  ++ ++K +  +  GQ  V
Sbjct: 292 ANFLSENF-----RNLDNLSAKFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQQVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
            Y    ++ +V+  G I+   R+    + L
Sbjct: 346 IY----HQNQVILAGEIALLFRNGKKLDYL 371


>gi|54020202|ref|YP_115943.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 232]
 gi|53987375|gb|AAV27576.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma hyopneumoniae 232]
          Length = 387

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 36/390 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--------CCAGQDV 73
           ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S   +   G         C   QD 
Sbjct: 18  KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 77

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  +  D+ + + + V       Y +G TP P + CN+ +KF   L   
Sbjct: 78  LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 137

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++   AD +A GHY ++     D+G     +    D  +DQSYFL   ++ QL    FPL
Sbjct: 138 QKVHNADFIAMGHYAKT-----DNGN----LYAGADSLKDQSYFLGQLSKSQLQKTIFPL 188

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
           G++ K  VR +A E+GL  A K DS  ICF+ + K+ D ++      A  G+I+ +   +
Sbjct: 189 GNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQNYIP--AQPGNIIDISTKK 246

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           +LG+H GI+ +TIGQR+G G+  M EP FVV  +     + V P   ++ LE   +  + 
Sbjct: 247 VLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLMAKN 306

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
            N+L +        +      K R  Q+ +P+ +++  D+  ++ ++K +  +  GQ  V
Sbjct: 307 ANFLSENF-----RNLDNLSAKFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQQVV 360

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
            Y    ++ +V+  G I+   R+    + L
Sbjct: 361 IY----HQNQVILAGEIALLFRNGKKLDYL 386


>gi|329957309|ref|ZP_08297829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328523022|gb|EGF50125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 388

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 196/391 (50%), Gaps = 35/391 (8%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           V  +A  +N  +++K   + RV+V MSGG+DS+    +L+  GY++IG+T+ ++      
Sbjct: 22  VFLQAKTMNIREMNKI--EKRVLVGMSGGIDSTATCLMLQEQGYEIIGLTMWVWGDEPLE 79

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                         AR++  ++ + H+V D  E FRN ++  F   Y  G TP PCV CN
Sbjct: 80  --------------ARQLARSMGIEHHVADEREAFRNVIVRNFIDEYRQGRTPNPCVMCN 125

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              KF        +L    +ATGHY R      ++   +  +    D ++DQSYFL+   
Sbjct: 126 PLFKFRIFTEWADKLNCRYIATGHYTRL-----EELNGKIYIVAGDDEKKDQSYFLWKLG 180

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI- 239
           Q  L    FPLG   K  VRD  R+ G  + A++ +S ++CF+ +G Y D ++  +  I 
Sbjct: 181 QDVLRRCLFPLGAYTKLQVRDYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLREHSPEID 239

Query: 240 --ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
                G  V+  G  LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E 
Sbjct: 240 DEVGPGWFVNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQ 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           L+   +   + N + +G     V+      V+IR    PVP  V+R +DG + V FE   
Sbjct: 300 LKAEYMLAEQDNLIDEG----EVLGSSGLTVRIRYRSKPVPCSVKRLEDGRLLVHFEAEA 355

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             +A GQ+ VFY       RV GG  I+  +
Sbjct: 356 SAIAPGQSAVFYIG----KRVAGGSFIASQR 382


>gi|194337468|ref|YP_002019262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309945|gb|ACF44645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 361

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 190/370 (51%), Gaps = 25/370 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78
             +VVV +SGGVDS+V A LL   GY V G+ +++ ++   S   + S     D  D + 
Sbjct: 4   QKKVVVGISGGVDSAVSACLLVEQGYAVTGLNIRVLDAPDESPSLRPSPLVISDHPDFQ- 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +     +   +FR+ VI  F   Y  G TP PC+ CN+ +K+  L    R L A
Sbjct: 63  ------IPVLSLNLSRKFRDEVIGYFHEDYLGGRTPNPCMVCNKKIKWFGLFEGLRLLDA 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGH+  +    G     R  + +  D E+DQSYFL+  +Q  L    FPLG++ K 
Sbjct: 117 DFVATGHFAATSFSEG-----RYRLYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKP 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255
            VR LAR  G+  A+K +SQ+ICFV Q  Y   +     G+A    +GDIV  +G+++G+
Sbjct: 172 EVRALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVDESGRVIGK 231

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQRRGLGV+  EPL+V  LD   +R+ VG + SLE   +    IN +G   
Sbjct: 232 HRGYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKKSSLECSSLVASGINLIGM-- 289

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             +      + + KIR      P  ++   ++   V F   +  VA GQA VFY      
Sbjct: 290 --ERPNIPIEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFYRD---- 343

Query: 375 ARVLGGGIIS 384
             VLGGG I+
Sbjct: 344 REVLGGGFIT 353


>gi|116671273|ref|YP_832206.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter sp. FB24]
 gi|166234843|sp|A0JYI6|MNMA_ARTS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116611382|gb|ABK04106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter sp. FB24]
          Length = 379

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/389 (37%), Positives = 194/389 (49%), Gaps = 27/389 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY +    V  D      + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVCTGHYAK----VITDADGNPELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A+K DS DICF+  G     +          GDIV   G  +G H 
Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFIPDGDTAGWLAEKIEMTT--GDIVDEAGTKVGEHP 233

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQRRGL +      G+P FV+ +    ++V+VGP   L +  I   +++W G 
Sbjct: 234 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGL 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVY-----VDFEKSEVGVASGQA 364
            + E A  D F C  ++R+  DPVP   +     +DDG       V       GVA GQ 
Sbjct: 294 PIAEVATGDEFDCHAQVRAHGDPVPATARMERLTDDDGAERTNLVVTLATPLRGVAPGQT 353

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            V Y      +RVLG   I  ++      
Sbjct: 354 VVLYQG----SRVLGQATIDTARSLQRAA 378


>gi|195162397|ref|XP_002022042.1| GL14198 [Drosophila persimilis]
 gi|194103940|gb|EDW25983.1| GL14198 [Drosophila persimilis]
          Length = 387

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 179/377 (47%), Gaps = 25/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV MSGGVDS+V A LLK  G+ V+GV ++ ++        G C   QD+ DA   C  
Sbjct: 5   IVVGMSGGVDSAVSAHLLKERGHRVMGVFMRNWDEHD---EAGRCSGEQDLKDAEWACQR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + +     +Y + +  AV   F   Y  G TP P + CNR +KF         +LG D +
Sbjct: 62  LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKFDLFHRHALDKLGYDAV 121

Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY R+ L     +  D G+ R  +  P D  +DQ++FL    +Q L    FPLGD+ 
Sbjct: 122 ATGHYARNSLGNFLEHRADGGEAR--LLIPADTFKDQTFFLAGIPRQALQRTMFPLGDLA 179

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           K  V+ LAR +GL  +A K +S  ICFV +  +   ++   A  +  G  V ++ G I+G
Sbjct: 180 KNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIVG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
            H GI  +T+GQR  LG  + +P FV   + +S+ + V       +L    I++   NWL
Sbjct: 238 SHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNWL 296

Query: 312 G-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
                   A     +C  + + ++  V   ++   D G  V  +     +  GQ  VFY 
Sbjct: 297 CVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDMPLRAITPGQYAVFYD 356

Query: 370 SDSNEARVLGGGIISGS 386
                   LG G I  +
Sbjct: 357 D----VACLGAGRIMSA 369


>gi|254442923|ref|ZP_05056399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobiae bacterium DG1235]
 gi|198257231|gb|EDY81539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobiae bacterium DG1235]
          Length = 360

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 182/374 (48%), Gaps = 26/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +++VAMSGGVDS+V A LLK  G+ + G  ++ + +    +  G C   QD+ DA  V 
Sbjct: 2   KKILVAMSGGVDSAVAALLLKEQGHAIEGAYMKNWINED--EILGDCPWQQDIEDAAAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V +  + +R+ ++    + Y +G TP P V CNR +KF   L    + G D 
Sbjct: 60  EALGIPFRVVNLMQEYRSRIVDYLLAGYQSGITPNPDVMCNREIKFGVFLDYALENGFDE 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + R    +   + R +    D  +DQ+YFL      Q+   RFP+G + K  +
Sbjct: 120 VATGHYAQIR----ETEDQPRAIIEGADPNKDQTYFLAKMRADQVARARFPVGHLLKPEL 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R+LA+   L  A K DSQ ICF+   K  D ++         G I+   + Q LG+H G+
Sbjct: 176 RELAQTASLPNAKKKDSQGICFIGNIKMSDFLREYVPD--RPGPIIRADDDQTLGQHRGL 233

Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLREINWLG 312
             +TIGQRRG+G+      E   VV  D   + ++V         L   R  +  +++ G
Sbjct: 234 HYFTIGQRRGIGIPSNTDNEFYVVVGKDIQRNALLVSFEAPTAPGLYSSRCEISSLSYTG 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
           +   +D      +   K+R     V +   R + + + V F++ +  +A GQ   FY   
Sbjct: 294 EPFPDD-----CRIEAKVRYRDPRVAITCHRLSPETIEVTFDQPQRALALGQIIAFYRG- 347

Query: 372 SNEARVLGGGIISG 385
               ++LGGG+ + 
Sbjct: 348 ---PQLLGGGVYTK 358


>gi|72080763|ref|YP_287821.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 7448]
 gi|123644877|sp|Q4A7U1|MNMA_MYCH7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71913887|gb|AAZ53798.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma hyopneumoniae 7448]
          Length = 372

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 36/390 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--------CCAGQDV 73
           ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S   +   G         C   QD 
Sbjct: 3   KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V   +N+  +  D+ + + + V       Y +G TP P + CN+ +KF   L   
Sbjct: 63  LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122

Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++   AD +A GHY ++     D+G     +    D  +DQSYFL   ++ QL    FPL
Sbjct: 123 QKVHNADFIAMGHYAKT-----DNGN----LYAGADSLKDQSYFLGQLSKSQLQKTIFPL 173

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251
           G++ K  VR +A E+GL  A K DS  ICF+ + K+ D ++      A  G+I+ +   +
Sbjct: 174 GNLLKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQNYIP--AQPGNIIDISTKK 231

Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307
           +LG+H GI+ +TIGQR+G G+  M EP FVV  +     + V P   ++ LE   +  + 
Sbjct: 232 VLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLMAKN 291

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366
            N+L +        +      K R  Q+ +P+ +++  D+  ++ ++K +  +  GQ  V
Sbjct: 292 ANFLSENF-----RNLDNLSAKFRYRQEAIPIRIEKIQDNSFWISYQKYQ-AITPGQQVV 345

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396
            Y    ++ +V+  G I+   R+    + L
Sbjct: 346 IY----HQNQVILAGEIALLFRNGKKLDYL 371


>gi|242212937|ref|XP_002472299.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728576|gb|EED82467.1| predicted protein [Postia placenta Mad-698-R]
          Length = 356

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/367 (30%), Positives = 170/367 (46%), Gaps = 21/367 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSVVA LL    YD+  V ++ +++R  S     C   +D  D +RVC  +++ 
Sbjct: 1   MSGGVDSSVVAKLLAEQDYDLSAVFMRNWDTRDESGTDKGCEWEKDWEDVQRVCKMLDIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
             + D  +++   V  P    +  G+TP P + CNR VKF  L+          +ATGHY
Sbjct: 61  CEMVDLSQQYWTRVFEPSLQLWEKGQTPNPDIWCNREVKFGALMDQLTGDDV-WVATGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
                +        + + RP D  +DQ+Y+L A  +  L    FPL    K  VR +A++
Sbjct: 120 ADKSWFP------CKSLRRPRDRTKDQTYYLSAIPEASLARTIFPLAPFAKTEVRAMAKK 173

Query: 207 MGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL-NGQILGRHNGIINYTI 264
             L  A +++S  ICFV + + FD  + +       +G I+ L  G+ LG H G+  YTI
Sbjct: 174 WELPTAQRAESMGICFVGEKRRFDGFLSQYI--TPRQGPIIDLQTGKQLGTHTGLWTYTI 231

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321
           GQ   L   M E +FV   D   + + V P     +L    +      W+        + 
Sbjct: 232 GQNARL-PGMPERMFVAKKDAERNEIYVVPSSTHPALYSRSLIASAWQWIWRDHPPGGID 290

Query: 322 D--GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           D  GF   V+ R      P  +QR    +++ FE+ +  VA GQ    +  D      LG
Sbjct: 291 DELGFHGRVQYRHRMLDAPATIQRRGHTIHITFEEPQQSVAPGQIAAVWDGD----WCLG 346

Query: 380 GGIISGS 386
            GII+G+
Sbjct: 347 SGIITGT 353


>gi|160883140|ref|ZP_02064143.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483]
 gi|299148187|ref|ZP_07041249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|156111365|gb|EDO13110.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483]
 gi|298512948|gb|EFI36835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 361

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R     G+       +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRLEEKSGN-----IYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       
Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAEQ----DKM 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + + F +    +A GQ+ VFY     
Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -KRVLGGAFIASQR 349


>gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 175/379 (46%), Gaps = 26/379 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ V
Sbjct: 74  PLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 133

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    S Y  G TP P V CN  +KF   L     LG D
Sbjct: 134 CDKIDVPLEVVHLSDEYWNHVVSHMISEYRNGRTPNPDVLCNTRIKFGAFLEAIENLGFD 193

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        ++ +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 194 YIASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLRRLLFPLGCITKDE 253

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +M L    + DSQ ICF+ + K+ + V+     I  EG ++    G  LG H G
Sbjct: 254 VRSLAVQMNLPNQARKDSQGICFLGKVKFSEFVQAHIGEI--EGILLEAETGDYLGTHRG 311

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL ++ G P +VV  D  ++ V V     SL+  R    +  +NW  D  
Sbjct: 312 FWFYTIGQRQGLRLSGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSDS- 369

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-----------NDDGVYVDFEKSEVGVASGQA 364
                 D  +   K+R S D     V R           N D + V   + + G+A+GQ 
Sbjct: 370 ---GPADNERLKCKVRHSPDFHNCTVTREQTEELVVNSNNGDVLAVRLSEDDQGLAAGQF 426

Query: 365 CVFYTSDSNEARVLGGGII 383
             FY      +  LG GII
Sbjct: 427 AAFYRD----SACLGSGII 441


>gi|161870410|ref|YP_001599582.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis 053442]
 gi|161595963|gb|ABX73623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 053442]
          Length = 334

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/346 (30%), Positives = 163/346 (47%), Gaps = 24/346 (6%)

Query: 49  GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108
           GV +Q +      +    C   QD +DA  V D I +   + ++  ++++ V   F   Y
Sbjct: 3   GVFMQNWEDDDNDE---YCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEY 59

Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168
           +AG TP P V CN  +KF   L      GAD +ATGHY R  +  G        + + +D
Sbjct: 60  SAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNG-----VHYLLKGLD 114

Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228
             +DQSYFL+     QL    FPLG ++K  VR LA E  L  A K DS  ICF+ +  +
Sbjct: 115 RNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPF 174

Query: 229 FDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNS 287
            + +++        G +V   G+ +G H G++ YT+GQR+GLG+   GEP FV   D   
Sbjct: 175 REFLQKYLPTDN--GKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTK 232

Query: 288 SRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-R 343
           + +IV        L    + + ++++    L E      + C  K R      P  ++  
Sbjct: 233 NELIVVQGHDHPLLYTRSLVMNDLSFT---LPERPKAGRYTC--KTRYRMADAPCELRYL 287

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
           +D+   + F++ +  V  GQ+ V Y  D      LGGGII  + + 
Sbjct: 288 DDETAELVFDEPQWAVTPGQSAVLYDGDI----CLGGGIIQTTDKP 329


>gi|261749175|ref|YP_003256860.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497267|gb|ACX83717.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 394

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/405 (28%), Positives = 194/405 (47%), Gaps = 51/405 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RVVV +SGGVDSSV A LLK+ GY+VIG+ +  ++    +     C   +D  DA  
Sbjct: 2   QKKRVVVGLSGGVDSSVAALLLKKQGYEVIGLFMHNWDDSVFN----QCTWKEDSIDALL 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +N+   V + ++ +  ++I      Y +G+TP P + CNR +KF+  L  +  LGA
Sbjct: 58  VAKDLNIPFQVVEMKKEYEESIINYMFDGYRSGKTPNPDILCNREIKFNVFLKKSIDLGA 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+  +  + +  K    +    D  +DQSYFL   TQ QL    FPLG + K 
Sbjct: 118 DFIATGHYVNKKKIIKN-NKIIYRLLVGKDSNKDQSYFLCQLTQYQLKKSLFPLGSLTKN 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL---------- 248
            VR +A + GL  A K DSQ +CFV + +    +++       +G+IV +          
Sbjct: 177 QVRKIAEKNGLCNAYKKDSQGLCFVGKIQLSRFLQK--KIFPKKGEIVMIDSNALMYHPK 234

Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLD 284
                                  +G+++G H G   +T GQR+G+ +    + LFV+  D
Sbjct: 235 KKSFLSKEEELFFLSKRKKYQKSDGKVIGYHQGAQFFTKGQRKGISIGGYKKALFVIETD 294

Query: 285 KNSSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
              + V  G       L    +++  ++I+W+ + +      +  + F +IR  Q     
Sbjct: 295 IKENIVYTGMGKNHPGLYKKSLFIQEKDIHWIREDIALLN-GEKMEVFCRIRYRQPLQKA 353

Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            + +  +G++++FE  +  +  GQ  V+Y        ++G GIIS
Sbjct: 354 LLYKIKNGMFIEFEILQCAITEGQFAVWYLD----KELIGSGIIS 394


>gi|237719106|ref|ZP_04549587.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451485|gb|EEO57276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 361

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   E G +    + +S ++CF+ +G Y + ++     +      G  V+  G  LG
Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYREFLREQCPELDSEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       
Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAEQ----DKM 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R +DG + + F +    +A GQ+ VFY     
Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -KRVLGGAFIASQR 349


>gi|195130901|ref|XP_002009889.1| GI15611 [Drosophila mojavensis]
 gi|193908339|gb|EDW07206.1| GI15611 [Drosophila mojavensis]
          Length = 380

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 184/386 (47%), Gaps = 26/386 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS+V A LLK  G++V+GV ++ ++        G C   QD+ DA   C  
Sbjct: 5   VVVGISGGVDSAVSAHLLKERGFNVLGVFMRNWDEHD---EAGRCSGEQDLKDAEWACRR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           +N+     +Y +++  +V   F   Y  G TP P + CN+ +KF        Q L  D +
Sbjct: 62  LNIELRQVNYVKQYWTSVFSQFLDDYQQGLTPNPDILCNKHIKFDLFHQHALQTLQYDAI 121

Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY R+ L     + G        +  P D  +DQ++FL    Q  L    FPLG +K
Sbjct: 122 ATGHYARNSLGDFLEHAGSQMTEDVRLLIPADTFKDQTFFLAGIAQAALRRTMFPLGGLK 181

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           K +V++LAR +GL  +A+K +S  ICFV +  +   ++      +  G+ V ++ G+I+G
Sbjct: 182 KTAVKELARRIGLQRLAEKRESTGICFVGKRDFKAFIREYI--TSKPGNFVDIDSGRIVG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
            H G+  +T+GQR  L   + +P FV   D  S+ + V       +L   RI++  +NWL
Sbjct: 240 THEGVHQWTVGQRCRLSSYL-QPYFVARKDAASNIIYVAAGHEHPALHSTRIHIDAVNWL 298

Query: 312 GDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                +    +G  +C  + + ++  V   ++       V  +     +  GQ  VFY  
Sbjct: 299 CSRARQQLATEGSLRCRFRFQHTKPLVDCQLRP----FEVQLDAPLRAITPGQYAVFYDD 354

Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396
                  LG   I   +    +E+ +
Sbjct: 355 ----VACLGAARILHGEPLQCLEQQV 376


>gi|290957209|ref|YP_003488391.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptomyces scabiei 87.22]
 gi|260646735|emb|CBG69832.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Streptomyces scabiei 87.22]
          Length = 376

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 144/388 (37%), Positives = 196/388 (50%), Gaps = 24/388 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           ++ + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   EIPQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +    V +DG   R + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHYAQV--IVREDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  
Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGRS--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +G +LG H G   YTIGQR+GL +      G+P +V+ +   ++ V VGP  SL+V  + 
Sbjct: 236 SGTVLGTHEGAFGYTIGQRKGLRIGTPASDGKPRYVLDISPVNNTVTVGPASSLDVEALT 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
                W G      A         ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AIRPRWCG-----AAPTGPGTYTAQLRAHGGETEVRAEPVDGTLEVSFTEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAV 392
            V Y       RV+G   I+ + R+ A 
Sbjct: 351 IVLYDG----TRVVGSATIASTTRAGAA 374


>gi|78779771|ref|YP_397883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9312]
 gi|123768944|sp|Q319J8|MNMA_PROM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78713270|gb|ABB50447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 385

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/376 (36%), Positives = 204/376 (54%), Gaps = 32/376 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G+DV G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVESGWDVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + ++H + D  E F   VI      Y  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTEGYEKGFTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138

Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R +     +         +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYAETLDYKSFVFKDFLLLRGTDENKDQSYFLYSLSQEVLSRLVFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+I+H+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIIHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNGI ++TIGQR+GLG+A  EPL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHNGIHHFTIGQRKGLGIAWPEPLYVKSLDRVKNIVYVADKSDLFNREAIISKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQACVF 367
               +      +   +IR    PV   +          +   + FE+S+  V  GQA VF
Sbjct: 317 ----EEPKQEIEVEAQIRYRSHPVKGTLIPMKNSDNPANTFKLIFEESQSSVTPGQAAVF 372

Query: 368 YTSDSNEARVLGGGII 383
           Y  +     +LGGG+I
Sbjct: 373 YKGEI----LLGGGLI 384


>gi|218295964|ref|ZP_03496744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus aquaticus Y51MC23]
 gi|218243702|gb|EED10230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus aquaticus Y51MC23]
          Length = 371

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 189/370 (51%), Gaps = 34/370 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDVYD 75
           V+VAMSGGVDSSV A LLK  GY+V+G  ++ +        +        SCC     Y+
Sbjct: 5   VLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPDLPPVSLETGAARAWESCCTPDAAYE 64

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV D + +  Y+ DY E F  A+I PF   YA G TP PC  CN  VKF  LL   R+
Sbjct: 65  ARRVADLLGIPFYLLDYREVFEEAIIAPFLEDYARGRTPNPCARCNTFVKFGALLKQARR 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG D +ATGHY+R              + R +D E+DQSYFL+ T ++ L  L FP+G +
Sbjct: 125 LGLDYVATGHYVRREGEA---------LLRGLDKEKDQSYFLWGTPKEALPHLLFPVGHL 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
            K+ VR +A+E GL  A K +SQ++CFV  G     +K      A  G +V +  G+++G
Sbjct: 176 TKKEVRQIAQEAGLPTARKPESQNLCFVA-GDLKGFLKERLK--ARPGPLVDVLTGEVVG 232

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           +H G   YT+GQR+GLG+       +VV LD   + V VGP+E+     +     N L +
Sbjct: 233 QHEGASLYTLGQRKGLGLWKTHLERYVVGLDVERNVVYVGPKEAALWEGMEAEGENLLEE 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              E  V          R    PV   V+ +   + + F      V  GQ+  FY  +  
Sbjct: 293 LPEEVEVQV--------RYRTPPVRAVVESSSP-LCLRFLTPVFAVTPGQSAAFYRGE-- 341

Query: 374 EARVLGGGII 383
             R+LGG +I
Sbjct: 342 --RLLGGAVI 349


>gi|167970222|ref|ZP_02552499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis H37Ra]
          Length = 367

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 196/372 (52%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV + L+ +   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMALW-TAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +A+K DS DICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +    
Sbjct: 229 VHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A      C V++R+  + V    +   D ++V       GVA GQ  V Y  D   
Sbjct: 289 ----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAG 344

Query: 375 ARVLGGGIISGS 386
             VLG   I+G+
Sbjct: 345 DEVLGSATIAGA 356


>gi|170109855|ref|XP_001886134.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639064|gb|EDR03338.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 370

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 179/377 (47%), Gaps = 22/377 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL +  YD+  V ++ +++   S     C   +D  D +RVC  +++ 
Sbjct: 1   MSGGVDSSVAAFLLAQQDYDLSAVFMRNWDTGDESGTDKGCEWEKDWEDVQRVCKKLDLP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----RQLGADVLA 142
             + D  + + N V  P    + +G TP   V CNR +KF  LL              +A
Sbjct: 61  CQMIDLSQEYWNRVFEPSLKQWESGVTPNTDVWCNREIKFGALLERLPAPTTSNKKPWIA 120

Query: 143 TGHYIRSRLYVGDDGKR---RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           TGHY R       +      R  + RP D  +DQ+Y+L + +++ L    FP+G ++K  
Sbjct: 121 TGHYARKSWSTTPNSPHTRPRPKLLRPSDRGKDQTYYLSSISEEGLSRALFPIGHLQKSE 180

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
           VR+LAR+  L  A++ DS  ICFV +  K+ + +          G +V  ++G+ L +H 
Sbjct: 181 VRELARKHQLHTAERPDSVGICFVGEKAKFSNFLSSYIP--PNPGPVVDQVSGKTLMQHA 238

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           G+  +T+G+   +   M E +FV   D+ S+ + V P    E L  + + + +  W+ + 
Sbjct: 239 GLWTFTLGENARI-PGMKERMFVSSKDQLSNTIYVVPGSDHEDLYSNTLRVSDFTWIWND 297

Query: 315 --LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               + +   GF+  +  R     VP  V++ + G + V  ++ E  V  GQ    Y  D
Sbjct: 298 AIPPDLSTPQGFRVDLMHRYRMHSVPSTVRKAETGDLIVTADEPEKAVTPGQIAALYDGD 357

Query: 372 SNEARVLGGGIISGSKR 388
                 LG G+I  + R
Sbjct: 358 ----WCLGCGVIKSTSR 370


>gi|13357963|ref|NP_078237.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762343|ref|YP_001752485.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|171920416|ref|ZP_02931735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508565|ref|ZP_02958082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701789|ref|ZP_02971467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|14195293|sp|Q9PQ88|MNMA_UREPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040514|sp|B1AJ41|MNMA_UREP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|11277497|pir||H82896 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase UU402
           [imported] - Ureaplasma urealyticum
 gi|6899388|gb|AAF30812.1|AE002137_11 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827920|gb|ACA33182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902858|gb|EDT49147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676011|gb|EDT87916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701067|gb|EDU19349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 385

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 33/377 (8%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQDVYDARR 78
            +SGGVDSSV A LLK++GY+VIG+ +  ++       + + +K    C +  D  DA+ 
Sbjct: 12  GLSGGVDSSVSALLLKQEGYEVIGLFMSNWDTIANFENNHEFNKTHQGCESELDYQDAQA 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLG 137
           V   I +  Y  ++ + + + V   F S Y    TP P + CN+ +KF   L+  + +L 
Sbjct: 72  VAQKIGIPLYRVEFIKEYWDNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAKNELQ 131

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +A GHY R +       +    + + +D  +DQ+YFL    Q QL ++ FP+G + K
Sbjct: 132 ADYIAMGHYARVKHD-----RNSSFLLKAIDTNKDQTYFLCNLNQNQLQNVLFPIGHLTK 186

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNGQILGRH 256
             VR +A++ GL  A+K DS  ICF+ +  +   ++         G  I  +N QI+G H
Sbjct: 187 LQVRAIAKKHGLITANKKDSTGICFIGERNFKTFLQNYIPN--QPGQIINIVNNQIIGHH 244

Query: 257 NGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYLREINWL 311
            G + YTIGQR+GL    M E +FV   D +   + V P    ++ L   +  +  IN++
Sbjct: 245 IGTMYYTIGQRKGLNLGGMNERMFVCDKDIDKKIIYVAPSSFEKQYLISTQALIENINFI 304

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
                +  +       V+ R  QD + V  F+   +    +   +S   +  GQ  VFY 
Sbjct: 305 EPYNPQIPI------MVRFRHRQDLIIVNDFLPIKNTKNVLINYESARAITPGQYAVFYQ 358

Query: 370 SDSNEARVLGGGIISGS 386
           +D      +GGGI+S +
Sbjct: 359 ND----HCIGGGIVSKT 371


>gi|187735150|ref|YP_001877262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Akkermansia muciniphila ATCC BAA-835]
 gi|205811102|sp|B2UPK4|MNMA_AKKM8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187425202|gb|ACD04481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 357

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/352 (33%), Positives = 169/352 (48%), Gaps = 16/352 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++V +SGGVDSSV AALL   G+DV+G  ++ + + +     G C   QD+ DA  V  
Sbjct: 3   RILVGLSGGVDSSVAAALLVEQGHDVVGAYMKNWVNDEG--IPGECPWEQDIQDALAVAK 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T  +   V D  + +R  ++      Y AG TP P V CNR +KF   L    + G D +
Sbjct: 61  TTGIEFRVIDLVDEYRARIVNYLIEGYRAGYTPNPDVLCNREMKFGVFLDYALEQGFDYV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       D  +   + R  D  +DQSYFL      Q+    FPLGD+ K  VR
Sbjct: 121 ATGHYARRM-----DTPQGAFILRGRDPNKDQSYFLSLMRPDQIARAVFPLGDLLKPEVR 175

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA + GL  A K DSQ ICF+ Q K  D ++         G+IV   G+ LG HNG+  
Sbjct: 176 VLAEKYGLPTARKKDSQGICFIGQVKMSDFLRHYLPD--KPGNIVDTEGRTLGTHNGLHL 233

Query: 262 YTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +T+GQR+G GVA    G    VV  D   +R+I+G  ++     +Y      +  G+   
Sbjct: 234 FTMGQRKGHGVASPREGVAYVVVGKDVRRNRLILGYEDA-STRGLYASRA--VVGGISNT 290

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                 +   + R          +  ++G V + F+     +A GQ C FY 
Sbjct: 291 LAPLPARVMAQPRYRAKAEWASCEYLEEGKVRLGFDTPLRALAVGQVCAFYD 342


>gi|224536253|ref|ZP_03676792.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522139|gb|EEF91244.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 359

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 188/376 (50%), Gaps = 33/376 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  D RV+V MSGG+DS+    +LK  GY+++G+T+ ++                    A
Sbjct: 2   NSPDKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDEPVE--------------A 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R++  ++ + H+V D  E FR  ++  F   Y  G TP PCV CN T KF  L     +L
Sbjct: 48  RQLAGSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKL 107

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   ++TGHY R      ++   +  +    D ++DQSYFL+   Q  L    FPLG   
Sbjct: 108 GCAFISTGHYSRL-----EEKNGKIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGTYT 162

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQI 252
           K  VR+  RE G  + A++ +S ++CF+ +G Y D ++  +  I      G  V   G  
Sbjct: 163 KLQVREYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSAIGPGWFVSSEGVK 221

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L    +   + N + 
Sbjct: 222 LGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTEYMLTEQDNLID 281

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +  F  A        V+IR    P+P  V+R +DG ++V F      +A GQ+ VFY   
Sbjct: 282 EQEFFSAS----DLTVRIRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQSAVFYIG- 336

Query: 372 SNEARVLGGGIISGSK 387
               RV+GG  I+  +
Sbjct: 337 ---RRVVGGSFIASQR 349


>gi|224371642|ref|YP_002605806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
 gi|223694359|gb|ACN17642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
          Length = 365

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/360 (33%), Positives = 185/360 (51%), Gaps = 26/360 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            +AMSGG+DS V A +LKR G+D++G+               +     +  D   + D +
Sbjct: 31  AIAMSGGIDSLVAAHVLKRQGHDLVGIHF-------------TTGFESEAVDLSSIEDQL 77

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++  +  D    F  AV+  F  +YA G+TP PCV CNRT+KF  L    + LGA+ +AT
Sbjct: 78  DIKIHQMDLSAEFNRAVVDYFVKTYARGKTPNPCVVCNRTIKFGVLAQRAKTLGAEKIAT 137

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY  +R            + + +D  +DQSYFL   +Q+QL    FPLG M KE VR++
Sbjct: 138 GHYAGTRTRS----NGGIALVKGVDGVKDQSYFLAMLSQEQLKQAVFPLGRMTKEQVRNI 193

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           AR+  L   ++ +SQDICF++   +   V    +     GDIV  +G ++GRH G+  YT
Sbjct: 194 ARDNRLMPVEEKESQDICFIKAPGFSGFVAARLSTPPSPGDIVLTDGTVVGRHRGLHRYT 253

Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323
           IGQRRGL     EP +V  +D  ++ ++VG ++ L   ++ + ++NW+        +   
Sbjct: 254 IGQRRGLNSPGPEPYYVKTIDMENNLLVVGGKKELYTIKVAVGDLNWIT-----PPLASS 308

Query: 324 FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            K   KIR S       +   +D   + F+  ++ V  GQ  VFY  +     VLG GII
Sbjct: 309 LKVTTKIRYSHKGAASTLSIENDRTTLVFDAPQLAVTPGQVAVFYRDE----EVLGAGII 364


>gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays]
          Length = 486

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 177/373 (47%), Gaps = 20/373 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C   +D+  A+ V
Sbjct: 74  PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAV 133

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    + Y  G TP P V CN  +KF   L     LG D
Sbjct: 134 CDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFD 193

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        ++ +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 194 YIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDE 253

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +M L    + DSQ ICF+ + K+ + V+R       EG I+   +G  LG H G
Sbjct: 254 VRRLATQMALPNQGRKDSQGICFLGKVKFSEFVERHIGE--KEGIILEAESGDYLGIHRG 311

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  +NW  +  
Sbjct: 312 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNF- 369

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +  +   K+R S +     +     + N D + V   + + G+A+GQ   FY+ 
Sbjct: 370 ---GPGNNEQLKCKVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYSE 426

Query: 371 DSNEARVLGGGII 383
           +      LG GII
Sbjct: 427 NV----CLGSGII 435


>gi|150003570|ref|YP_001298314.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
 gi|205810521|sp|A6KZ28|MNMA2_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|149931994|gb|ABR38692.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus ATCC 8482]
          Length = 351

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 187/372 (50%), Gaps = 24/372 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +   + +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          +
Sbjct: 1   MRETESNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDTEY---------L 51

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +C+ +N+ H  +D  + FR  +I  F + Y AG TP+PC  CN  +K+  L  ++
Sbjct: 52  EDARALCERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKIS 111

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++G    ATGHY+R R   G        +   +D ++DQS+FL+   Q+ L  +  P+G
Sbjct: 112 DEMGIYHFATGHYVRRRFING-----CYHITTGVDPDKDQSFFLWGLPQEILQRMLLPMG 166

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++ K  VR++A E G L  A K DS  +CF        + K +  G  L G      G  
Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + RH G   YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E +   
Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITN 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
             L    +++     VKIR  +      V    D+ ++V   +    +A GQA  FY  D
Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342

Query: 372 SNEARVLGGGII 383
                VLGGGII
Sbjct: 343 V----VLGGGII 350


>gi|60683221|ref|YP_213365.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|81313727|sp|Q5L8X6|MNMA3_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|60494655|emb|CAH09456.1| putative tRNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|301164740|emb|CBW24299.1| putative tRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 362

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+    +LG 
Sbjct: 50  LAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG+  K+
Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254
           +VRD  RE G +    + +S ++CF+ +G Y D ++     +      G  V   G  LG
Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L    +   + N +   
Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNIVD-- 281

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY     
Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYEG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|124026416|ref|YP_001015531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. NATL1A]
 gi|205816901|sp|A2C457|MNMA_PROM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123961484|gb|ABM76267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. NATL1A]
          Length = 404

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 144/386 (37%), Positives = 207/386 (53%), Gaps = 35/386 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  VVV +SGGVDSS+ AALL + G+DV G+TL L       K KGSCC+   + DA  +
Sbjct: 36  DQSVVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGI 88

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138
           CD + + H++ D +E F+  +I      Y  G TPLPC  CN++VKFS++L   ++    
Sbjct: 89  CDQLGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNI 148

Query: 139 DVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + +ATGHY R R             +G +R  + R  DL +DQSYFL+   Q+ L    F
Sbjct: 149 EKIATGHYARIRYSNESFNENDLPSNGIKRHKLLRGKDLNKDQSYFLYDLPQEILGRTIF 208

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLN 249
           PLG++ KE  R  A +  L  A K +SQD+C  +  G     + +       +G++V  +
Sbjct: 209 PLGELTKEITRIEALKHSLKTAKKPESQDLCLAEHYGSMNAFIDKYLPQ--KKGEVVLKS 266

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           GQI+G HNGI ++TIGQR+GLG+A   PL VV +D + +RVIV PRE        +++IN
Sbjct: 267 GQIIGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDIN 326

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--------VYVDFEKSEVGVAS 361
           W+      +A  +  K  V+IR     V   +    D          ++ FE+ +  +  
Sbjct: 327 WVSI----EAPQEPIKVEVQIRYRSKAVKAKLIPIFDSNKENYCYQCHIHFEEDQFSITP 382

Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387
           GQA VFY  D     VLGGG+IS   
Sbjct: 383 GQAAVFYMGD----YVLGGGLISKEY 404


>gi|253567176|ref|ZP_04844626.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5]
 gi|251944007|gb|EES84526.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5]
          Length = 362

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+N ++  F   Y  G TP PCV CN   KF  L+    +LG 
Sbjct: 50  LAARMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG+  K+
Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254
           +VRD  RE G +    + +S ++CF+ +G Y D ++     +      G  V   G  LG
Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L    +   + N +   
Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNIVD-- 281

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY     
Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYEG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|153809107|ref|ZP_01961775.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185]
 gi|149128440|gb|EDM19659.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185]
          Length = 361

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQERGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +LG 
Sbjct: 50  LAAQMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLGC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R     GD       +    D ++DQSYFL+   Q  L    FPLGD  K 
Sbjct: 110 AWVATGHYSRLEERNGD-----IYIVAGDDDKKDQSYFLWQLGQDVLRRCIFPLGDYTKV 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254
            VR+   + G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG
Sbjct: 165 KVREYLADKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDNEIGPGWFVNSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L    +   +       
Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTDYMLTEQ----DKI 279

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E  +       V+IR    P+P  V+R  DG + V F ++   +A GQ+ VFY     
Sbjct: 280 VDERELFQCENLTVRIRYRSRPLPCRVKRLADGRLLVRFLETASAIAPGQSAVFYDG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|198467713|ref|XP_002134614.1| GA22395 [Drosophila pseudoobscura pseudoobscura]
 gi|198149375|gb|EDY73241.1| GA22395 [Drosophila pseudoobscura pseudoobscura]
          Length = 387

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 179/377 (47%), Gaps = 25/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV MSGGVDS+V A LL+  G+ V+GV ++ ++        G C   QD+ DA   C  
Sbjct: 5   IVVGMSGGVDSAVSAHLLRERGHRVMGVFMRNWDEHD---EAGRCSGEQDLKDAEWACQR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + +     +Y + +  AV   F   Y  G TP P + CNR +KF         +LG D +
Sbjct: 62  LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKFDLFHRHALDKLGYDAV 121

Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY R+ L     +  D G+ R  +  P D  +DQ++FL    +Q L    FPLGD+ 
Sbjct: 122 ATGHYARNSLGNFLEHRADGGEAR--LLIPADTFKDQTFFLAGIPRQALQRTMFPLGDLA 179

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           K  V+ LAR +GL  +A K +S  ICFV +  +   ++   A  +  G  V ++ G I+G
Sbjct: 180 KNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIVG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
            H GI  +T+GQR  LG  + +P FV   + +S+ + V       +L    I++   NWL
Sbjct: 238 SHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNWL 296

Query: 312 G-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369
                   A     +C  + + ++  V   ++   D G  V  +     +  GQ  VFY 
Sbjct: 297 CVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDIPLRAITPGQYAVFYD 356

Query: 370 SDSNEARVLGGGIISGS 386
                   LG G I  +
Sbjct: 357 D----VACLGAGRIMSA 369


>gi|307192441|gb|EFN75657.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Harpegnathos
           saltator]
          Length = 408

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 30/383 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV MSGGVDS+V A LLK  G++V GV ++ ++ R  +   G C    D  DAR  CD 
Sbjct: 5   IVVGMSGGVDSAVTAFLLKYKGFNVTGVFMKNWDIRDET---GKCMIENDYEDARWTCDR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141
           + +     D+ + + N V       Y  G TP P V CN+ +KF         +L AD +
Sbjct: 62  LRIPLVQVDFVKEYWNEVFSDLVEKYQTGYTPNPDVLCNKYIKFDKFFHFALNKLQADAI 121

Query: 142 ATGHYIRSRL------YVGDDGK-----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ATGHY R+        Y  D G      RR  + +  D ++DQ++FL   +QQ L    F
Sbjct: 122 ATGHYARTSFGSYLEDYKADVGTYHLILRRVRLLQAYDRDKDQTFFLSQVSQQTLRRCMF 181

Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           PLG+  K  V+ +A+E  L  IA K +S  ICFV + ++   +          GD ++L+
Sbjct: 182 PLGNYLKSHVKTIAKEASLYRIAQKKESMGICFVGKREFQHFISEYIDD--KPGDYINLD 239

Query: 250 -GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305
            G I+G+HNGI   TIGQR  +G    +  FV   D+ +S V+V       +L  + +  
Sbjct: 240 SGLIVGKHNGIHKMTIGQRCRIG-GRHKACFVSGKDQETSAVLVVEGTNHPALYTNFLIT 298

Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASG 362
           ++I+W+ +   E    +G F C  + +  +  +   V +   +  +++        +  G
Sbjct: 299 QDIHWISEEPSELRQSNGVFHCKFRFQHRKPLISCCVYKTSGEHRLFIRLSIPLRAITKG 358

Query: 363 QACVFYTSDSNEARVLGGGIISG 385
           Q  V Y+ +      LGG IIS 
Sbjct: 359 QYAVLYSGE----ECLGGSIISR 377


>gi|300087159|ref|YP_003757681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526892|gb|ADJ25360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 359

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 201/373 (53%), Gaps = 28/373 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG------SCCAGQDVYD 75
           +++VA+SGGVDS+V AAL +  GYDV G+ + +Y+  ++   K            +DV D
Sbjct: 4   KILVALSGGVDSAVAAALAQESGYDVTGIIMTIYDGPESPNEKSHKHGCYGPGEEEDVKD 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V   + +   VFD +  +R  ++  F + Y AG TP PCV CN+ +K   LL   R+
Sbjct: 64  AEAVAQHLGIKLQVFDLKNEYRTNILESFKNEYRAGRTPNPCVYCNQQIKLGALLDKARE 123

Query: 136 LGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            G D   + TGHY R+  +   +   R  + R     +DQSYFL   +Q QL  LRFPLG
Sbjct: 124 SGLDFEFVFTGHYARTDFHHQSN---RYRLLRARYHNKDQSYFLSRLSQAQLRILRFPLG 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D+ K+ VR LA  + L ++ K +SQ+  F+  G      +++       G I + +G I+
Sbjct: 181 DLSKDEVRKLAERINLPVSRKEESQN--FISGG-----YRQLVCSQDTSGPIKNKSGDII 233

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+H+GI ++TIGQR GLG++  EPL+VV +D   + ++VG R +L    I + ++NW+  
Sbjct: 234 GQHSGISSFTIGQRHGLGLSSPEPLYVVQIDAPENTIVVGARSALYRDEIQVEKLNWISI 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSD 371
              E+ V    +   ++RS+  P    V  N   D V V FE  ++  A GQ  VFY  D
Sbjct: 294 SQLENPV----QLTARVRSAAVPAAAMVIPNHLTDSVTVRFEVPQMAPAPGQIAVFYEDD 349

Query: 372 SNEARVLGGGIIS 384
                V+G G+I+
Sbjct: 350 I----VVGSGVIT 358


>gi|297157006|gb|ADI06718.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces bingchenggensis
           BCW-1]
          Length = 384

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 24/389 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
            ++ + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 11  PRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 70  SRDARRAADVIGIPFYVWDLAERFREDVVDNFIAEYEAGRTPNPCLRCNEKIKFAALLDK 129

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY        +DG   R + R  D+ +DQSY L    ++QL    FPL
Sbjct: 130 ALALGFDAVCTGHYATVVHR--EDGT--RELHRASDMAKDQSYVLGVLDERQLAHAMFPL 185

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K+ +R  A   GL +A K DS DICF+  G     + +       EGDIV  +G
Sbjct: 186 GDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAKHLGTA--EGDIVDEDG 243

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           + LG H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP ++L++  +   
Sbjct: 244 RKLGTHEGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVDALDIASLTAI 303

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W G                ++R+      V  +  D  + V F +   GVA GQA V
Sbjct: 304 TPRWCG-----TPPTGPATYTAQLRAHGSETEVTAEAVDGELRVTFAEPVRGVAPGQAIV 358

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEES 395
            Y      ARV+G   I+ ++R++    +
Sbjct: 359 LYDG----ARVVGSATIATTERAERAASA 383


>gi|254881202|ref|ZP_05253912.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA]
 gi|319640212|ref|ZP_07994938.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A]
 gi|254833995|gb|EET14304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA]
 gi|317388199|gb|EFV69052.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A]
          Length = 351

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 186/372 (50%), Gaps = 24/372 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +   + +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          +
Sbjct: 1   MRETESNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDTEY---------L 51

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +C+ +N+ H  +D  + FR  +I  F + Y AG TP+PC  CN  +K+  L  ++
Sbjct: 52  EDARALCERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKIS 111

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++G    ATGHY+R R   G        +    D ++DQS+FL+   Q+ L  +  P+G
Sbjct: 112 DEMGIYHFATGHYVRRRFING-----CYHITTGADSDKDQSFFLWGLPQEILQRMLLPMG 166

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++ K  VR++A E G L  A K DS  +CF        + K +  G  L G      G  
Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + RH G   YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E +   
Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITN 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
             L    +++     VKIR  +      V    D+ ++V   +    +A GQA  FY  D
Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342

Query: 372 SNEARVLGGGII 383
                VLGGGII
Sbjct: 343 V----VLGGGII 350


>gi|53715285|ref|YP_101277.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81608253|sp|Q64P39|MNMA3_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|52218150|dbj|BAD50743.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Bacteroides fragilis YCH46]
          Length = 362

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F++ ++  F   Y  G TP PCV CN   KF  L+    +LG 
Sbjct: 50  LAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG+  K+
Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254
           +VRD   E G +    + +S ++CF+ +G Y D ++     +      G  V   G  LG
Sbjct: 165 TVRDYLHEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L+   +   + N +   
Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLKAEYMVAEQDNIVD-- 281

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY     
Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYEG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|265767771|ref|ZP_06095303.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|263252443|gb|EEZ23971.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 362

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 33/374 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   SKKRVLVGMSGGIDSTATCMMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F+N ++  F   Y  G TP PCV CN   KF  L+    +LG 
Sbjct: 50  LAARMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      ++      +    D ++DQSYFL+   Q  L    FPLG+  K+
Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164

Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254
           +VRD  RE G +    + +S ++CF+ +G Y D ++     +      G  V   G  LG
Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G   YTIGQR+GL +A+G+P +V+ ++   + V++G    L    +   + N +   
Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNIVD-- 281

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             ED +       V+IR    P+P  V+R +DG + V F      +A GQ+ VFY     
Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYEG--- 336

Query: 374 EARVLGGGIISGSK 387
             RVLGG  I+  +
Sbjct: 337 -RRVLGGAFIASQR 349


>gi|302522058|ref|ZP_07274400.1| tRNA methyl transferase [Streptomyces sp. SPB78]
 gi|302430953|gb|EFL02769.1| tRNA methyl transferase [Streptomyces sp. SPB78]
          Length = 382

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 194/386 (50%), Gaps = 24/386 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
           + +P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 3   ETSPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 62  SRDARRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY R   +        R + R  D+ +DQSY L     +QL    FPL
Sbjct: 122 ALALGFDAVCTGHYARVLTHPD----GSRELHRASDMAKDQSYVLGVLDDRQLAHAMFPL 177

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  +G
Sbjct: 178 GDTETTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA--EGDIVDESG 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             LG H G   +TIGQR+GL +      G+P +V+ +    + V VGPRESL+V  +   
Sbjct: 236 TRLGTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTAV 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W G      A +   +   ++R+      V  +   D + V F+    GVA GQA V
Sbjct: 296 RPRWCG-----TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAVV 350

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392
            Y       RV+G   I+ +++ +  
Sbjct: 351 LYDG----TRVVGSATIATTRKPEPA 372


>gi|269794372|ref|YP_003313827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
 gi|269096557|gb|ACZ20993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
          Length = 407

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 202/401 (50%), Gaps = 29/401 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA +   G++V+GV + L  +R   +     CC+ +D  DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARIVDAGHEVVGVHMALSRNRNQFREGSRGCCSIEDAGDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV+D  E+F + V+  F S YAAG TP PCV CN  +KF  LL     LG D
Sbjct: 61  ADVLGIPYYVWDLSEKFEDTVVADFLSEYAAGRTPNPCVRCNEHIKFEALLDKATALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            +ATGHY +       DG   R + R  +  +DQSY L     ++L    FPLG  + K+
Sbjct: 121 AVATGHYAQVITSTRPDGSELRELHRSPNTAKDQSYVLAVMGPERLRRAMFPLGAFESKD 180

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +VR  A   GL ++ K DS DICFV  G     ++         GDIV ++G +LG H G
Sbjct: 181 AVRAEAAARGLSVSAKPDSYDICFVADGDTKGFLQERLG--TKTGDIVDVDGTVLGEHEG 238

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQR+GL +      G+  +V+ +   S+ V+VGP E L V RI   +  WL D 
Sbjct: 239 AYAYTVGQRKGLAIGRPAADGKARYVLDIQPVSNTVVVGPAEMLSVDRITGDQSVWLADD 298

Query: 315 LF----------EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFE-KSEV 357
           +             A        V++R+  +PVP  V+   D      G+ V+    +  
Sbjct: 299 VLAAHGAETGSTAAAPSGWIDAEVQVRAHGEPVPARVRAVPDASGATGGMEVELVGATLR 358

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398
           GVA+GQ+ V Y       RVLG   +  S R+   E     
Sbjct: 359 GVAAGQSLVAYLG----TRVLGQSTVVASTRAGRAETQPAQ 395


>gi|294631522|ref|ZP_06710082.1| tRNA methyl transferase [Streptomyces sp. e14]
 gi|292834855|gb|EFF93204.1| tRNA methyl transferase [Streptomyces sp. e14]
          Length = 376

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/390 (36%), Positives = 199/390 (51%), Gaps = 24/390 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           +  + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY   ++ VG+DG   R + R  D+ +DQSY L    ++QL    F
Sbjct: 122 DKALALGFDAVCTGHYA--KVVVGEDG--VRELHRASDMAKDQSYVLGVLDEKQLAHALF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    KE +R  A   GL +A K DS DICF+  G     + R       EGDIV  
Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLARRLGKA--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G ++G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  + 
Sbjct: 236 TGAVVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVEALT 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
                W G       V        ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AIRPRWCGAAPTGPGV-----YTAQLRAHGGESEVTAELVDGELRVTFTEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
            V Y       RV+G   I+ ++R+ A   
Sbjct: 351 IVLYDG----TRVVGSATIASTRRATAGAA 376


>gi|189463744|ref|ZP_03012529.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM
           17393]
 gi|189438694|gb|EDV07679.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM
           17393]
          Length = 359

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 186/373 (49%), Gaps = 33/373 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V MSGG+DS+    +LK  GY+++G+T+ ++                    AR++
Sbjct: 5   EKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDEPVE--------------ARQL 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D++ + H+V D  E FR  ++  F   Y  G TP PCV CN T KF  L     +L   
Sbjct: 51  ADSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKLDCA 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY        ++      +    D ++DQSYFL+   Q  L    FPLG   K  
Sbjct: 111 FISTGHYSHL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCLFPLGTYTKLQ 165

Query: 200 VRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255
           VR   RE G  + A++ +S ++CF+ +G Y D ++  +  I      G  V+  G  LG 
Sbjct: 166 VRKYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDREIGPGWFVNSEGVKLGE 224

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N + +  
Sbjct: 225 HKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQDNIIDEQE 284

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
           F  A        V++R    P+P  V+R +DG ++V F      +A GQ+ VFY      
Sbjct: 285 FFSA----LDLTVRVRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQSAVFYIG---- 336

Query: 375 ARVLGGGIISGSK 387
            RV+GG  I+  +
Sbjct: 337 RRVVGGSFIASQR 349


>gi|257125311|ref|YP_003163425.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
 gi|257049250|gb|ACV38434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
          Length = 364

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 23/377 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K   D +VVV MSGG+DSSV A LLK+ GY+VIGVTL+      +     +CC+  D+
Sbjct: 1   MNKKLDDKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR  C  + + HYV +  E F+  V+  F   Y AG+TP PCV C+  VK   L+   
Sbjct: 61  NDARYTCYNLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLVEFA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++G   ++TGHY +             ++    +  +DQ+Y L+   +  +    FPL 
Sbjct: 121 DKMGIKYISTGHYSKVSENN--------MLLWDKNNRKDQTYMLYRLDKDIVERFLFPLA 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           + +K  VR++AR+ G+   +K DSQ ICF   G Y   +K++      +G+ V  NG+I+
Sbjct: 173 EYEKSEVREIARQNGIHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKNGKII 231

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   YTIGQRRGLG+ +G+P FV+ L   ++ V+VG  E L +  I +    +   
Sbjct: 232 GEHIGYQFYTIGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEELLIKEIEVINYKFH-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQACVF 367
             +    + G K   + R S   +   ++       N++ +  +F++     + GQ  VF
Sbjct: 290 --YSLENIIGKKLTARPRFSSKGLTGELKILKNEESNENRIIFEFDEKTHENSEGQHIVF 347

Query: 368 YTSDSNEARVLGGGIIS 384
           Y +D     ++GGG I 
Sbjct: 348 YLND----EIVGGGEIK 360


>gi|310778027|ref|YP_003966360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
 gi|309747350|gb|ADO82012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
          Length = 356

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 13/365 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARR 78
             +VVV MSGGVDSSV A LLK +GY+VIGVTL+ L +    +    +CC+  D+YDA+ 
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEEGYEVIGVTLKHLSDEDSENTNTKTCCSLDDIYDAKM 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  + + HYV D  E F+  VI  F   Y+ G TP PCV C+  +K   L     +LGA
Sbjct: 62  ACFKLGIPHYVVDAVEPFKKDVIDYFIGEYSKGITPSPCVVCDEKIKIKKLAETADKLGA 121

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D ++TGHY               ++    +  +DQ+Y L+   +  L  + FPL + +K+
Sbjct: 122 DYISTGHYCDVSYS---QELGSHLLKLSKNSAKDQTYMLYRIGENILKRMLFPLKNFEKK 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR +A+E G+ + DK DSQ ICF  +G Y +++KRI       G+ +  +G ILG+H G
Sbjct: 179 KVRGIAKEAGISVHDKKDSQGICFAPEG-YKELLKRILGEKIKPGNFITRDGHILGQHEG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
              YTIGQRRGLG+ + +  F+  +D + + +I+G  E L    + L +  +L D     
Sbjct: 238 YQLYTIGQRRGLGINLSKVYFITGIDSDKNEIILGDFEELMKKEVELTDTVFLADI---- 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             ++  K F + R S   +P  +++ D+ ++  +++     + GQ  V Y  D     V+
Sbjct: 294 EKLEKIKLFGRPRFSSIGLPGRLKKIDNRIFFIYDEENAKNSPGQHMVIYYKD----LVV 349

Query: 379 GGGII 383
           GGG I
Sbjct: 350 GGGKI 354


>gi|114686941|ref|XP_515202.2| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 isoform 2 [Pan troglodytes]
          Length = 435

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 180/426 (42%), Gaps = 61/426 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR-----------------------IMCRPMDLERDQSYFL 177
           +ATGHY R+ L   +   R                          + +  D  +DQ++FL
Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRIN 236
              +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +  
Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242

Query: 237 AGIALEGDIVHL-NGQILGRHNGIINY---------TIGQRRGLGVAMGEPLFVVYLDKN 286
                 G  + + + ++LG H G   +          +   RG    + EP  +   D  
Sbjct: 243 Q--PRPGHFISIEDNKVLGTHKGWNVFLSPLGCLVPPLCFYRGTVGCLREPC-MCEKDSV 299

Query: 287 SSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQ 342
              V V P     +L    +    ++W+ +      V D   +C  + R     VP  + 
Sbjct: 300 KGNVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLT 359

Query: 343 RNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSD 390
            N DG V+V   ++   +A+GQ  VFY  D      LG G I            G +R+ 
Sbjct: 360 LNQDGTVWVTAVQAVRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAG 415

Query: 391 AVEESL 396
              ES 
Sbjct: 416 MATESP 421


>gi|206889455|ref|YP_002249424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206889622|ref|YP_002249374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741393|gb|ACI20450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741560|gb|ACI20617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 342

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 192/364 (52%), Gaps = 31/364 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++AMSGG+DSSV A LL+  G  V GV   L++                +  A++  +
Sbjct: 3   KVLLAMSGGIDSSVAAYLLREKGMAVEGVFFILFDEPAN------------IELAKQTAN 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +N+  ++ D  E+F+  VI PF   Y  G TP PCV CN+ +KF  L  +  ++ A+ +
Sbjct: 51  FLNIKLHIEDLREKFKADVITPFFEGYKKGITPNPCVICNKKIKFPLLKFLAEKVKANYI 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R             ++ + +D ++DQSYFL+   +  L  + FPLG+  K  +R
Sbjct: 111 ATGHYARIVRI-----NNIPLLMKGIDPKKDQSYFLYGIERTLLSHIIFPLGEYTKYKIR 165

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++A ++G+      +S ++CF++  +Y++ ++    G      I    G+I+G+H GI  
Sbjct: 166 EIAEKVGIPSKVAEESTEVCFLRDKRYYESIRPTKGGPI----IEMSTGKIIGQHRGIHL 221

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YTIGQR+ LG+A   PL+VV ++ + + V V  +E   +    + E+NWL D   E+   
Sbjct: 222 YTIGQRKRLGIASPHPLYVVKIEPSENAVYVDSKEKAFMREFVVNELNWLCDIEKEE--- 278

Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
             F C VKIR + +P    V   N D   V FEK +     GQ+ VFY  D     VLGG
Sbjct: 279 --FSCQVKIRYAMNPEKATVTLINKDRANVVFEKPQFAPTPGQSAVFYNGDI----VLGG 332

Query: 381 GIIS 384
           G+I 
Sbjct: 333 GVIK 336


>gi|329963139|ref|ZP_08300919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328529180|gb|EGF56110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 359

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 189/376 (50%), Gaps = 33/376 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  + RV+V MSGG+DS+    +LK  GY+++G+T+ ++  +                DA
Sbjct: 2   NKSEKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDKP--------------VDA 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             + +++ + HY+ D  + FR  ++  F   Y  G TP PCV CN   KF  L+    +L
Sbjct: 48  CELAESMGIGHYIADERDAFRRIIVQDFIDEYRQGRTPNPCVMCNPMFKFRILMEWADKL 107

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   +ATGHY R     G     +  +    D ++DQSYFL+   Q  L    FPLG   
Sbjct: 108 GCKYIATGHYTRLEEIDG-----KVYIIAGDDDKKDQSYFLWRLGQDVLKRCIFPLGTYT 162

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252
           K  VR   R+ G  + A++ +S ++CF+ +G Y D +K  +  I      G  V+  G  
Sbjct: 163 KPQVRGYLRDKGYAVKAEEGESMEVCFI-KGDYRDFLKEHSPEIDREIGPGWFVNSEGVK 221

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   + + +     
Sbjct: 222 LGEHKGYPYYTIGQRKGLEIALGKPAYVLKINPLKNTVMLGDAEQLKTRHMLVEQ----E 277

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               E  V +  +  V+IR    P+P  V+R +DG + V F+     +A GQ+ VFY   
Sbjct: 278 KLTDEREVFESKELTVRIRYRSKPIPCTVRRLEDGRLLVCFQVEASAIAPGQSAVFYIG- 336

Query: 372 SNEARVLGGGIISGSK 387
               RV+GG  I+  +
Sbjct: 337 ---RRVVGGSFIASQR 349


>gi|302558240|ref|ZP_07310582.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000]
 gi|302475858|gb|EFL38951.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000]
          Length = 377

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/391 (36%), Positives = 196/391 (50%), Gaps = 24/391 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           +  + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +  L   +DG   R + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHYAQVILR--EDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    KE +R  A   GL +A K DS DICF+  G     +         EGDIV  
Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGRA--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +G  +G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  + 
Sbjct: 236 SGSKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTALS 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
             +  W G      A         ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AIKPRWCG-----AAPSGPGTYTAQLRAHGGETEVTAELVDGTLEVSFTEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395
            V Y       RV+G   I+ + R+ A   S
Sbjct: 351 IVLYDG----TRVVGSATIASTVRAAAATAS 377


>gi|72382697|ref|YP_292052.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           NATL2A]
 gi|123620903|sp|Q46JH9|MNMA_PROMT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|72002547|gb|AAZ58349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. NATL2A]
          Length = 388

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/383 (37%), Positives = 205/383 (53%), Gaps = 35/383 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDSS+ AALL + G+DV G+TL L       K KGSCC+   + DA  +CD 
Sbjct: 23  VVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGICDQ 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + + H++ D +E F+  +I      Y  G TPLPC  CN++VKFS++L   ++    + +
Sbjct: 76  LGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNIEKI 135

Query: 142 ATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ATGHY R R             DG +R  + R  DL +DQSYFL+   Q+ L    FPLG
Sbjct: 136 ATGHYARIRYSNESFNENDLPSDGIKRHKLLRGKDLNKDQSYFLYDLPQEILGKTIFPLG 195

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++ KE  R  A +  L  A K +SQD+C  +  G     + +       +G++V  NGQI
Sbjct: 196 ELTKEITRIEALKHSLKTAKKPESQDLCLAEHYGSMNAFIDKYLPQ--KKGEVVLKNGQI 253

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G HNGI ++TIGQR+GLG+A   PL VV +D + +RVIV PRE        +++INW+ 
Sbjct: 254 IGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDINWVS 313

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQA 364
                +A  +  +  V+IR     +   +    D           + FEK +  +  GQA
Sbjct: 314 I----EAPQEPIEVEVQIRYRSKAMKAKLIPIFDSNKENYCYKCNIHFEKDQFSITPGQA 369

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            VFY  D     VLGGG+IS   
Sbjct: 370 AVFYKGD----YVLGGGLISKEY 388


>gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group]
 gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group]
 gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 488

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 174/373 (46%), Gaps = 20/373 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ V
Sbjct: 77  PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 136

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    + Y +G TP P V CN  +KF   L     LG D
Sbjct: 137 CDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        DD +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 197 YIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDE 256

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +M L   D+ DSQ ICF+ + K+ + V+R      +EG ++    G  LG H G
Sbjct: 257 VRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGE--MEGVLLEAETGDYLGTHRG 314

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL +  G P +VV     ++ V V     SL+  R    +  +NW  +  
Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS- 372

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTS 370
                 +  +   K+R S +     V +         + V   + + G+A+GQ   FY  
Sbjct: 373 ---GPTNNEQLKCKVRHSPEFHDCTVTQEQTSEHGVILVVRLSEDDQGLAAGQFAAFYRD 429

Query: 371 DSNEARVLGGGII 383
           +      LG GII
Sbjct: 430 N----LCLGSGII 438


>gi|195043220|ref|XP_001991577.1| GH11989 [Drosophila grimshawi]
 gi|193901335|gb|EDW00202.1| GH11989 [Drosophila grimshawi]
          Length = 381

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 175/388 (45%), Gaps = 27/388 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGGVDS+V A LLK  G +V+GV ++ ++        G C   QD+ DA   C 
Sbjct: 4   RVVVGMSGGVDSAVSAHLLKERGLNVLGVFMRNWDEHD---EIGRCTGEQDLKDAEWACR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +     +Y +++  AV   F   Y  G TP P + CN+ +KF          L  D 
Sbjct: 61  QLQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKFDLFHRHALDTLQYDA 120

Query: 141 LATGHYIRS------RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +ATGHY R+           D  K    +  P D  +DQ++FL    Q  L    FPLG 
Sbjct: 121 VATGHYARNSLGDYLEHRSTDQQKADVRLLIPADTFKDQTFFLAGIPQTALQFTMFPLGG 180

Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252
           + K  V+ LAR +GL  +A K +S  ICFV +  +   ++         G  V ++ G++
Sbjct: 181 LLKTEVKQLARRIGLQRLAVKRESTGICFVGKRDFKAFIREYI--SCKPGHFVDVDSGEV 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           +G H GI  +T+GQR  L   + +P FV   D  S+ + V       +L   RI + + N
Sbjct: 239 VGNHEGIHQWTVGQRCRLSSYL-QPYFVARKDAASNTIFVAAGHDHPALHSIRIRIGDFN 297

Query: 310 WLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           WL +   +     G  +C  + + ++  V  +++       V  +     +  GQ  VFY
Sbjct: 298 WLCNRARQQLATSGSLRCRFRFQHTKPVVECWLRP----FEVLLDAPLRAITPGQYAVFY 353

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                    LG   I  ++    +E+  
Sbjct: 354 DD----VACLGSARILCAEPLQQMEQQA 377


>gi|301065024|ref|ZP_07205369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium NaphS2]
 gi|300440873|gb|EFK05293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta
           proteobacterium NaphS2]
          Length = 363

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 188/378 (49%), Gaps = 21/378 (5%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           +     K+   ++++VA+SGGVDSS+ AA LK  G+ V G+   L +    S+++     
Sbjct: 3   HPSGPAKSSNALKILVALSGGVDSSMAAAFLKGAGHRVHGLHFVLPSPADISQKR----- 57

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              +  A+ + + + +    FD    F   +I PF  +Y  G TP PCV CN  +KF  +
Sbjct: 58  ---ISKAKEISEHLQIPLTTFDLRPIFETELIAPFVDAYLKGLTPNPCVRCNPLIKFEQM 114

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +    D +ATGHY+R R            + R  D  +DQSYFL    Q+QL    
Sbjct: 115 YRHLKTFQFDFMATGHYVRIRRKGK---NSPVTLWRGKDRLKDQSYFLHRLGQRQLAKTI 171

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHL 248
           FPLG M K  +R  AR+MG+  ++  +SQ+ICF+    Y + ++      +  +G I++L
Sbjct: 172 FPLGHMTKTEIRFQARKMGIPSSEDPESQEICFIPNMDYRNFIESRKKNASFQKGPIINL 231

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G+ +G H+GI  YT+GQR GLG+A   P +V  L    + VIVG RE L    +   + 
Sbjct: 232 KGETVGEHSGIHRYTVGQRHGLGIASSRPYYVKTLKPEDNCVIVGRREDLFSKGVAATDF 291

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367
           +W+    FE   +D      ++R    P    ++ +    V   F + ++ +  GQA V 
Sbjct: 292 HWIT--PFEPGSLDSL--SGQVRYRHKPAGGRLEIDASRRVRFIFHRPQMAITPGQALVC 347

Query: 368 YTSDSNEARVLGGGIISG 385
           Y  D    RVLGGG I G
Sbjct: 348 YQGD----RVLGGGWIVG 361


>gi|226365929|ref|YP_002783712.1| tRNA-specific 2-thiouridylase MnmA [Rhodococcus opacus B4]
 gi|254811458|sp|C1B1S2|MNMA_RHOOB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226244419|dbj|BAH54767.1| putative tRNA uridine-sulfurtransferase [Rhodococcus opacus B4]
          Length = 364

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 199/373 (53%), Gaps = 23/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F +SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +    V         + R +D ++DQSY L   T +QL    FP+GD  K+
Sbjct: 120 DAVATGHYAQLENGV---------LRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257
            +R+ A E GL +A+K DS DICF+  G     +          G +V  + G++L  H 
Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSGDTRAFLGAHIG--VRPGSVVDADSGEVLAEHE 228

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLGV    A G+P +V  ++  +  V VG    LEVH I      W   
Sbjct: 229 GVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPETGTVRVGSARDLEVHAITADRAVWTSG 288

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                A     +C V++R+         +  D G+ +   +   GVA GQA V Y +D  
Sbjct: 289 R----APSGPVECTVQVRAHGGLAEAVAEAVDGGIRISLREPLTGVAKGQAAVLYRTDPA 344

Query: 374 EARVLGGGIISGS 386
              VLG G ISG+
Sbjct: 345 GDIVLGSGTISGT 357


>gi|15610161|ref|NP_217540.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842587|ref|NP_337624.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           CDC1551]
 gi|31794202|ref|NP_856695.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis AF2122/97]
 gi|121638907|ref|YP_979131.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662876|ref|YP_001284399.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           H37Ra]
 gi|148824215|ref|YP_001288969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis F11]
 gi|215405014|ref|ZP_03417195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 02_1987]
 gi|215428470|ref|ZP_03426389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis T92]
 gi|215447296|ref|ZP_03434048.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis T85]
 gi|224991399|ref|YP_002646088.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797879|ref|YP_003030880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 1435]
 gi|254233657|ref|ZP_04926982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis C]
 gi|254365655|ref|ZP_04981700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254552097|ref|ZP_05142544.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188054|ref|ZP_05765528.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202161|ref|ZP_05769652.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis T46]
 gi|289444586|ref|ZP_06434330.1| tRNA methyl transferase [Mycobacterium tuberculosis T46]
 gi|289448700|ref|ZP_06438444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553185|ref|ZP_06442395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 605]
 gi|289746832|ref|ZP_06506210.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU
           [Mycobacterium tuberculosis 02_1987]
 gi|289751695|ref|ZP_06511073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis T92]
 gi|289759148|ref|ZP_06518526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis T85]
 gi|294993474|ref|ZP_06799165.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis 210]
 gi|297635653|ref|ZP_06953433.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732651|ref|ZP_06961769.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN
           R506]
 gi|306777328|ref|ZP_07415665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu001]
 gi|306781232|ref|ZP_07419569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu002]
 gi|306785873|ref|ZP_07424195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu003]
 gi|306790227|ref|ZP_07428549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu004]
 gi|306794722|ref|ZP_07433024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu005]
 gi|306798964|ref|ZP_07437266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu006]
 gi|306969100|ref|ZP_07481761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu009]
 gi|306973444|ref|ZP_07486105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu010]
 gi|307081154|ref|ZP_07490324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu011]
 gi|307085756|ref|ZP_07494869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu012]
 gi|313659983|ref|ZP_07816863.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039755|sp|P66977|MNMA_MYCBO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54042259|sp|P66976|MNMA_MYCTU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234858|sp|A1KN20|MNMA_MYCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235068|sp|A5U737|MNMA_MYCTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811454|sp|C1AGE1|MNMA_MYCBT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2791622|emb|CAA16109.1| PROBABLE tRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           TRMU [Mycobacterium tuberculosis H37Rv]
 gi|13882900|gb|AAK47438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis CDC1551]
 gi|31619797|emb|CAD96737.1| PROBABLE tRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           TRMU [Mycobacterium bovis AF2122/97]
 gi|121494555|emb|CAL73036.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599186|gb|EAY58290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis C]
 gi|134151168|gb|EBA43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148507028|gb|ABQ74837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis H37Ra]
 gi|148722742|gb|ABR07367.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU
           [Mycobacterium tuberculosis F11]
 gi|224774514|dbj|BAH27320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319382|gb|ACT23985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417505|gb|EFD14745.1| tRNA methyl transferase [Mycobacterium tuberculosis T46]
 gi|289421658|gb|EFD18859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis CPHL_A]
 gi|289437817|gb|EFD20310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 605]
 gi|289687360|gb|EFD54848.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU
           [Mycobacterium tuberculosis 02_1987]
 gi|289692282|gb|EFD59711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis T92]
 gi|289714712|gb|EFD78724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis T85]
 gi|308214222|gb|EFO73621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu001]
 gi|308325877|gb|EFP14728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu002]
 gi|308329399|gb|EFP18250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu003]
 gi|308333244|gb|EFP22095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu004]
 gi|308336898|gb|EFP25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu005]
 gi|308340714|gb|EFP29565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu006]
 gi|308353256|gb|EFP42107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu009]
 gi|308357089|gb|EFP45940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu010]
 gi|308361042|gb|EFP49893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu011]
 gi|308364679|gb|EFP53530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu012]
 gi|323718255|gb|EGB27433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902753|gb|EGE49686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis W-148]
 gi|328457656|gb|AEB03079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis KZN 4207]
          Length = 367

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 196/372 (52%), Gaps = 22/372 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +A+K DS DICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +    
Sbjct: 229 VHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A      C V++R+  + V    +   D ++V       GVA GQ  V Y  D   
Sbjct: 289 ----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAG 344

Query: 375 ARVLGGGIISGS 386
             VLG   I+G+
Sbjct: 345 DEVLGSATIAGA 356


>gi|294777621|ref|ZP_06743072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|294448689|gb|EFG17238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
          Length = 351

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 185/372 (49%), Gaps = 24/372 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +   + +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          +
Sbjct: 1   MRETESNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDTEY---------L 51

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +C+ +N+ H  +D  + FR  +I  F + Y AG TP+PC  CN  +K+  L  ++
Sbjct: 52  EDARALCERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKIS 111

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++G    ATGHY+R R   G        +    D ++DQS+FL+   Q+ L  +  P+G
Sbjct: 112 DEMGIYHFATGHYVRRRFING-----CYHITTGADPDKDQSFFLWGLPQEILQRMLLPMG 166

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++ K  VR++A E G L  A K DS  +CF        + K +  G  L G      G  
Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + RH G   YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E     
Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITN 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
             L    +++     VKIR  +      V    D+ ++V   +    +A GQA  FY  D
Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342

Query: 372 SNEARVLGGGII 383
                VLGGGII
Sbjct: 343 V----VLGGGII 350


>gi|320008432|gb|ADW03282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 377

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/385 (37%), Positives = 196/385 (50%), Gaps = 23/385 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY    L   DDG   R M R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHYATVVL--KDDGT--REMHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDI+  +G  +G
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGGPA-EGDILDESGAKVG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            G      A         ++R+      V  +  D  ++V F +   GVA GQA V Y  
Sbjct: 301 CG-----TAPSGPGTYTAQLRAHGGETEVTAELTDGTLHVTFTEPVRGVAPGQAVVLYDG 355

Query: 371 DSNEARVLGGGIISGSKRSDAVEES 395
                RV+G   I+ + R +    +
Sbjct: 356 ----TRVVGSATIATTVRRETAAAA 376


>gi|254525416|ref|ZP_05137468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221536840|gb|EEE39293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 385

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 204/376 (54%), Gaps = 32/376 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTDSYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138

Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R +     +         +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYVEKLNCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+I+H+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H GI ++T+GQR+GLG+A  EPL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHKGIQHFTVGQRKGLGIAWPEPLYVKSLDRGKNIVYVSDKSDLFNKEAIISKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367
               D      +   +IR    PV   +    +         + FE+++  +  GQA VF
Sbjct: 317 ----DEPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKKFKLIFEENQSSITPGQAAVF 372

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     +LGGG+I
Sbjct: 373 YKGDI----LLGGGLI 384


>gi|254459256|ref|ZP_05072678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
 gi|207084149|gb|EDZ61439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
          Length = 344

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 197/372 (52%), Gaps = 32/372 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGG+DSSV A LL+++GY+VIGV ++L++  +            ++   ++V
Sbjct: 2   NKKVIVGMSGGIDSSVTAYLLQQEGYEVIGVYMKLHDLIENF-------HEDNIASGKKV 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ + +++ D   +F+  V   F   Y  G TP PCV CNRT+KF  L    ++ GAD
Sbjct: 55  ARSLGIEYHILDLSSKFKEEVYDYFVGEYLNGNTPNPCVKCNRTIKFGALFDFAKEQGAD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY ++      DG+    + +  D  +DQSYFL    Q  L  L FP+   +K  
Sbjct: 115 FLATGHYAKT------DGE---FIYKAEDDTKDQSYFLAQIKQDVLKHLIFPMNKYRKTE 165

Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           +  L   + +  +IA + +SQ+ICFV+   Y D++K+    I L G  +  +G  +G H 
Sbjct: 166 IVKLGSTLPVIKEIAKRKESQEICFVENV-YTDIIKKHT-DIDLPGLALDTDGNEVGHHK 223

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+RRG  V    EP +V  +D N++ ++V  ++ L V ++ +  +N   D   
Sbjct: 224 GYMHYTIGKRRGFTVHGAHEPHYVKEIDPNANTIVVCKKDDLGVSKVLIDTLNLFIDK-- 281

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  F+C VK+R     +   V   D    +  +K+  GVA+GQ  VFY  +    +
Sbjct: 282 -----KEFECTVKLRYRTHKIACKVIIEDSEAMIYLDKNVDGVATGQVAVFYDGN----K 332

Query: 377 VLGGGIISGSKR 388
           VLG G I  + +
Sbjct: 333 VLGSGFIKKTFQ 344


>gi|119962187|ref|YP_948425.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter aurescens TC1]
 gi|119949046|gb|ABM07957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter aurescens TC1]
          Length = 436

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/383 (37%), Positives = 195/383 (50%), Gaps = 27/383 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 58  MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 116

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 117 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 176

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY +    V +D    R + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 177 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 232

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A+K DS DICF+  G     +          GDIV   G  +G H 
Sbjct: 233 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKIDMTT--GDIVDETGAKVGEHP 290

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQRRGL +      G+P FV+ +    ++V+VGP   L +  I   +++W G 
Sbjct: 291 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGL 350

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVY-----VDFEKSEVGVASGQA 364
            + E A    F C  ++R+  DPVP   +     ++ GV      V       GVA GQ 
Sbjct: 351 PISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQT 410

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            V Y      +RVLG   I  ++
Sbjct: 411 VVLYQG----SRVLGQATIDAAR 429


>gi|126696814|ref|YP_001091700.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9301]
 gi|205816922|sp|A3PEC4|MNMA_PROM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126543857|gb|ABO18099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 385

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLI------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAVNKKDFTHI 138

Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R +     +         +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYAETLDCKSFKFKDFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+IVH+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIVHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNGI ++TIGQR+GLG+A  +PL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHNGIQHFTIGQRKGLGIAWPDPLYVKSLDRVKNIVYVADKSDLFNREAIITKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367
               +      +   +IR    PV   +    +         + FE+S+  V  GQA VF
Sbjct: 317 ----EEPKQEIEVEAQIRYRSHPVKGTLIPLKNFDNPTTTFKLIFEESQSSVTPGQAAVF 372

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +     +LGGG+IS
Sbjct: 373 YKGEI----LLGGGLIS 385


>gi|294815245|ref|ZP_06773888.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327844|gb|EFG09487.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC
           27064]
          Length = 381

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/382 (37%), Positives = 191/382 (50%), Gaps = 24/382 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
              P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 3   QTPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 62  SRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY              R + R  D+ +DQSY L    ++QL    FPL
Sbjct: 122 ALALGFDAVCTGHYATVVTLPD----GGRELHRASDMAKDQSYVLGVLDERQLAHAMFPL 177

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  +G
Sbjct: 178 GDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDESG 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             LG H G   +TIGQR+GL +      G+P +V+ +    +RV VGP E+L+V  +   
Sbjct: 236 TRLGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAI 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W G      A         ++R+     PV  +   DG+ V+F +   GVA GQA V
Sbjct: 296 RPRWCG-----TAPAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIV 350

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y       RV+G   I+ ++R
Sbjct: 351 LYDG----TRVVGSATIASTRR 368


>gi|171913655|ref|ZP_02929125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 365

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 182/375 (48%), Gaps = 24/375 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++ A+SGGVDSSV AALL R+G+DV G  ++ + + +     G C   +D+ DAR V 
Sbjct: 1   MKILAALSGGVDSSVAAALLVREGHDVSGAYMKNWINEEN--IIGHCPWQEDIEDARAVA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +   V +    +R  V+    + Y  G TP P V CNR +KF  L    +  G D 
Sbjct: 59  DQLGIEFRVVNLMREYREKVVKYLLAGYQEGITPNPDVMCNREMKFGVLWEWAKDHGYDA 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R  L    +     I+ R +D  +DQ+YFL     +Q+   RFP+G + K  V
Sbjct: 119 IATGHYARWELPA--EPGAHPIVRRGVDGNKDQTYFLAMMRPEQVEIARFPIGHLPKAEV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A  +GL  A+K DSQ ICF+ + K  D ++         G+IV+L G++LG H G+ 
Sbjct: 177 RVEASRLGLKTAEKKDSQGICFIGEVKMEDFLRTFVPD--NPGNIVNLEGKVLGEHRGLH 234

Query: 261 NYTIGQRRGLGVAMG---EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            YT+GQR+GL V      +   VV     ++ ++V   ++ +   ++ R+          
Sbjct: 235 LYTLGQRKGLRVPSNLYKQAYVVVAKRPAANELVVAIEQA-DTPLLWARKAILTQISTTG 293

Query: 318 DAVVDGFKCFVKIRSSQDPVPV-------FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
             ++   +   + R      P        F + +     + +++ +  +  GQ C  Y  
Sbjct: 294 PDLLVPRRLNAQPRYR---CPAGMAMYTPFEREDGWAAELVYDEPQRALTPGQICALYDG 350

Query: 371 DSNEARVLGGGIISG 385
           D    ++LGG +   
Sbjct: 351 D----QLLGGAVFES 361


>gi|330998316|ref|ZP_08322141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329568705|gb|EGG50506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 378

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 196/384 (51%), Gaps = 31/384 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+V MSGG+DSS V  +L+ +GY+V+GVT+++++  +     G       + DAR 
Sbjct: 4   ERKKVLVGMSGGIDSSAVCLMLQDEGYEVVGVTMRVWDLARQFTDAGQ-EYPDFIQDARA 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + HYV D    F++ V+  F   Y AG TP PCV CN   KF  L+    +LG 
Sbjct: 63  LAARLGIVHYVADERTAFKDIVVRDFVDEYLAGRTPNPCVMCNPAFKFRVLVEWADKLGC 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY+R +     +      +   +D ++DQSYFL+   Q  L    FPLG M+KE
Sbjct: 123 DYIATGHYVRVK-----EEDGHYALYCGVDGKKDQSYFLWRLGQDVLSRCIFPLGAMRKE 177

Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254
            VR      G ++ A   +S +ICF+    Y D ++     +     EG  V + G+++G
Sbjct: 178 DVRGYLARKGFEMKARSGESMEICFI-DKDYRDFLREQVPDLDRCVGEGKFVDVQGRVIG 236

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   +T+GQR+GLG+A+G+P +V+ L+   + V++G  + L+   + +      G  
Sbjct: 237 THCGFPYFTVGQRKGLGIALGKPAYVLRLNARKNTVMLGDADDLDASHMLVS-----GMR 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV----------YVDFEKSEVGVASGQA 364
           + ED   D     V+IR    P+P  V+R  +             V F++    V  GQ+
Sbjct: 292 MPEDGTWDDGSLSVRIRYRSRPIPCTVRRVKNLFPEEGGSEELGLVRFKEKASAVTPGQS 351

Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388
            VFY  D      +GG  I GS+R
Sbjct: 352 AVFYVGDKM----VGGAYI-GSQR 370


>gi|218128478|ref|ZP_03457282.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697]
 gi|317475697|ref|ZP_07934957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217989369|gb|EEC55682.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697]
 gi|316908153|gb|EFV29847.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 362

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 188/378 (49%), Gaps = 33/378 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D N  + RV+V MSGG+DS+    +L+  GY+++G+T+ ++    +              
Sbjct: 5   DMNKAEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVWGDEPSE------------- 51

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR++  ++ + HYV D  + FR  ++  F   Y  G TP PCV CN   KF  L     
Sbjct: 52  -ARQLAQSMGIEHYVADERKAFREVIVRNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 110

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L    +ATGHY R      ++   +  +    D ++DQSYFL+   Q  L    FPLG 
Sbjct: 111 RLDCRYIATGHYTRL-----EERNGKIYIVAGDDEKKDQSYFLWRLGQDVLRRCLFPLGT 165

Query: 195 MKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNG 250
             K  VRD  R  G  + A++ +S ++CF+ +G Y D ++  +  I      G  V+  G
Sbjct: 166 YTKLQVRDYLRGKGYALKAEEGESMEVCFI-KGDYRDFLREYSPEIDKEVGPGWFVNSEG 224

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
             LG H G   YT+GQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N 
Sbjct: 225 VKLGEHKGFPYYTVGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTEYMLAEQDNL 284

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
           + +      V    +  V+IR    P+   V+R +DG + V F+     +A GQ+ VFY 
Sbjct: 285 IDEA----EVFGNEELTVRIRYRSKPIACSVKRLEDGRLLVHFQTEASAIAPGQSAVFYV 340

Query: 370 SDSNEARVLGGGIISGSK 387
                 RV+GG  I+  +
Sbjct: 341 G----KRVVGGSFIASQR 354


>gi|160890666|ref|ZP_02071669.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492]
 gi|270295763|ref|ZP_06201963.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|317479803|ref|ZP_07938923.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|156859665|gb|EDO53096.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492]
 gi|270273167|gb|EFA19029.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|316904009|gb|EFV25843.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 364

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 33/376 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N    RV+V MSGG+DS+    +L+  GY++IG+T+ ++                    A
Sbjct: 2   NKPGKRVLVGMSGGIDSTATCLMLREQGYEIIGLTMWVWGDEPVE--------------A 47

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + D++ + HYV D  + FR  ++  F   Y  G TP PCV CN   KF  L     +L
Sbjct: 48  RSLADSMGIEHYVADERDAFRRIIVRNFIDEYRRGRTPNPCVMCNPLFKFRILTEWADRL 107

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   +ATGHY R      ++   +  +    D ++DQSYFL+   Q+ L    FPLG   
Sbjct: 108 GCAFVATGHYTRL-----EERNGKTYIVAGDDDKKDQSYFLWRLGQEVLKRCIFPLGAFT 162

Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQI 252
           K  VR   R+ G  + A++ +S ++CF+ +G Y D ++  +  I      G  V+  G  
Sbjct: 163 KMQVRGYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSEVGPGWFVNSEGVK 221

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   E N + 
Sbjct: 222 LGGHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMLAEEENLID 281

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
           +  F        +  V+IR    P+P  V+R +DG + V F      +A GQ+ VFY   
Sbjct: 282 EAEF----FGSEELTVRIRYRSKPIPCTVKRLEDGRLLVRFLSEASAIAPGQSAVFYVG- 336

Query: 372 SNEARVLGGGIISGSK 387
               RV+GG  I+  +
Sbjct: 337 ---RRVVGGSFIASQR 349


>gi|301107608|ref|XP_002902886.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora
           infestans T30-4]
 gi|262098004|gb|EEY56056.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora
           infestans T30-4]
          Length = 416

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/399 (29%), Positives = 179/399 (44%), Gaps = 46/399 (11%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLKR GY V GV ++ ++     + + +C    +  D ++VC+ + + 
Sbjct: 1   MSGGVDSSVAALLLKRQGYHVTGVYMKNWDPSDE-EGESACPVDSEYVDVQKVCEQLGIE 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
             + +  + + N V  P  + Y  G TP P + CNR +KF       +Q+GAD +ATGHY
Sbjct: 60  AQMVNLVQSYWNQVFAPCLAGYEEGLTPNPDILCNREIKFKAFTEFAKQIGADCVATGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
              R     +      +C   D  +DQSYFL +   +   ++ FPLG M+K  VR +A  
Sbjct: 120 AALRP---AEKGGPPNLCAAEDESKDQSYFLSSVDGKAFANVLFPLGGMRKTEVRQIAES 176

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
            GL  A K DS  ICF+ +  + D + +       +G    + G+ +  H+G   YT+GQ
Sbjct: 177 EGLCTATKKDSVGICFIGKRNFADFIHQYIQR--QDGYFYTVGGEKMHPHHGFTAYTVGQ 234

Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVV 321
              L   M    FVV   K    VIV       +L    ++    + NW+   L  +   
Sbjct: 235 GARLQ-GMSAKWFVVGKHKFDHSVIVAEGTRNPALFSDALFASAEQFNWMAGDLPPELRD 293

Query: 322 DG-FKCFVKIRSSQDPVPVFVQR----------------------NDDGV--------YV 350
            G  +CF ++R  QD     +                        N++GV         V
Sbjct: 294 TGRMRCFYRVRYRQDLDKCTISLVSNREARASASKLHDWQPELVANEEGVENGEKIYLRV 353

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
           DF+  + GV   QA V Y SD       GGG I+ + ++
Sbjct: 354 DFDHPQRGVTPEQALVLYRSD---GLCYGGGPIAAAGQT 389


>gi|282861250|ref|ZP_06270315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. ACTE]
 gi|282563908|gb|EFB69445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. ACTE]
          Length = 377

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/385 (37%), Positives = 193/385 (50%), Gaps = 23/385 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY    L   +DG   R + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHYATVVL--TEDGT--RELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDIV   G  +G
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDIVDEAGTKVG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +      W
Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIRPRW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            G      A         ++R+      V  +  D  + V F +   GVA GQA V Y  
Sbjct: 301 CG-----TAPSGPGTYTAQLRAHGGETEVTAELVDGTLNVSFTEPVRGVAPGQAVVLYDG 355

Query: 371 DSNEARVLGGGIISGSKRSDAVEES 395
                RV+G   I+ + R +    S
Sbjct: 356 ----TRVVGSATIATTVRRETAAAS 376


>gi|329936861|ref|ZP_08286540.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptomyces griseoaurantiacus M045]
 gi|329303786|gb|EGG47670.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptomyces griseoaurantiacus M045]
          Length = 376

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 197/388 (50%), Gaps = 24/388 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           D  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 4   DTPQTRRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 62

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 63  EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 122

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +  L   +DG   R + R  D+ +DQSY L    ++QL    F
Sbjct: 123 DKALALGFDAVCTGHYAQVILR--EDGT--RELHRASDMAKDQSYVLGVLDERQLAHAMF 178

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    KE +R  A   GL +A K DS DICF+  G     + +       EGDIV  
Sbjct: 179 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSKRLGRA--EGDIVDE 236

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +G  +G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  + 
Sbjct: 237 SGTKVGTHEGAFGFTIGQRKGLRIGTPAADGKPRYVLDISPVTNTVTVGPAAALDVDALT 296

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
             +  W G      A         ++R+  +   V  +  D  + V F     GVA GQA
Sbjct: 297 AVKPRWCG-----TAPSGPGTYTAQLRAHGEETEVSAELVDGALEVTFTTPVRGVAPGQA 351

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAV 392
            V Y       RV+G   I+ ++R+ A 
Sbjct: 352 VVLYQG----TRVVGSATIASTRRAVAA 375


>gi|260889979|ref|ZP_05901242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia hofstadii F0254]
 gi|260860585|gb|EEX75085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia hofstadii F0254]
          Length = 371

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 197/378 (52%), Gaps = 23/378 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +++K   + +VVV MSGG+DSSV A LLK+ GY+VIGVTL+      +     +CC+  D
Sbjct: 6   EMNKKLDEKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDD 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DAR  C T+ + HYV +  E F+  V+  F   Y AG+TP PCV C+  VK   LL  
Sbjct: 66  INDARYTCYTLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLLEF 125

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             ++G   ++TGHY +             ++    +  +DQ+Y L+   +  +    FPL
Sbjct: 126 ADKMGIKYISTGHYSKVSENN--------MLLWDKNNRKDQTYMLYRLDKDVVERFLFPL 177

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            + +K  VR++AR+ G+   +K DSQ ICF   G Y   +K++      +G+ V  NG+I
Sbjct: 178 AEYEKSEVREIARQNGVHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKNGKI 236

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G H G   YT+GQRRGLG+ +G+P FV+ L   ++ V+VG  E L +  I +       
Sbjct: 237 IGEHIGYQFYTVGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEELLIKEIEVIN----R 292

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQACV 366
              ++   + G K   + R S   V   ++       N++ +  +F++     + GQ  V
Sbjct: 293 KFHYDLKEIIGKKLTARPRFSSKGVVGKLKLLKSEKSNENRIIFEFDEKTHENSEGQHIV 352

Query: 367 FYTSDSNEARVLGGGIIS 384
           FY  +     ++GGG I 
Sbjct: 353 FYLDN----EIVGGGEIK 366


>gi|319900025|ref|YP_004159753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319415056|gb|ADV42167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 357

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 190/373 (50%), Gaps = 33/373 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V MSGG+DS+    +LK  GY+++G+T+ ++                    A ++
Sbjct: 5   EKRVLVGMSGGIDSTATCLMLKGQGYEIVGLTMWVWGDEPVE--------------AGQL 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D++ + HY+ D  E FR  ++  F   Y+ G TP PCV CN   KF  L     +L   
Sbjct: 51  ADSMGIEHYIVDERESFRRIIVQNFIDEYSGGRTPNPCVMCNPLFKFRILTEWADKLCCK 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      ++   +  +    D ++DQSYFL+   Q  L    FPLG   K  
Sbjct: 111 YIATGHYTRL-----EEINHKIYIIAGDDDKKDQSYFLWRLGQDVLKRCIFPLGTYTKIQ 165

Query: 200 VRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255
           VR+  R+ G  + A++ +S ++CF+ +G Y D +K  +  I  E   G  V+  G  LG 
Sbjct: 166 VREYLRDNGYTVKAEEGESMEVCFI-KGDYRDFLKEYSPEIDSEIGSGWFVNSEGVKLGE 224

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   + N   +G 
Sbjct: 225 HKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTRYMLAEQENLTDEGE 284

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
           F ++ V      V+IR    P+P  V+R +DG + V F      +A GQ+ VFY      
Sbjct: 285 FFESDV----LTVRIRYRSKPIPCTVKRLEDGRLLVHFLIDASAIAPGQSAVFYID---- 336

Query: 375 ARVLGGGIISGSK 387
            RV+GG  I+  +
Sbjct: 337 KRVVGGAFIASQR 349


>gi|195438780|ref|XP_002067310.1| GK16353 [Drosophila willistoni]
 gi|194163395|gb|EDW78296.1| GK16353 [Drosophila willistoni]
          Length = 380

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 179/386 (46%), Gaps = 24/386 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS++ A LLK  GY+V+GV ++ ++    +   G C    D+ DA   C  
Sbjct: 5   VVVGISGGVDSAISAHLLKERGYNVLGVFMRNWDE---NDEAGRCSGELDLKDAEWACQR 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           +++     +Y +++  AV   F   Y  G TP P + CN+ +KF    +  R+ L  D +
Sbjct: 62  LDIELRQVNYVKQYWMAVFTQFLDDYQQGLTPNPDILCNKHIKFDLFHTHCRERLQYDAV 121

Query: 142 ATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY  +                +  P D  +DQ++FL   +Q+ L    FPLG M K 
Sbjct: 122 ATGHYAANSWGNYLEQQLQGEEPRLLIPQDKFKDQTFFLSGISQRSLRHTMFPLGCMLKT 181

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRH 256
            V+ LAR++GL  +A+K +S  ICFV +  +   +          G  + ++ G  +G+H
Sbjct: 182 EVKQLARQIGLQRLAEKRESTGICFVGKRNFKSFIGEYL--SPRPGPFIDIDTGCEVGQH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313
            GI  +TIGQR  L   + +P FV   +   + + V       +L  +R+ +  INWL  
Sbjct: 240 EGIHQWTIGQRCRLSSFL-QPYFVARKEPLRNIIYVASGHEHPALHSNRLTIDPINWLCS 298

Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                 V +G  +C  + + ++  V   +   +    V  +     +  GQ  VFY    
Sbjct: 299 TAKTRYVQEGRLRCRFRFQHTKPLVNCSIIEEE----VVLDSPLRAITPGQYAVFYDD-- 352

Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398
                LG   I  SK  D +E+  + 
Sbjct: 353 --QACLGSARILRSKPLDQLEQQTVK 376


>gi|205815001|sp|A1R863|MNMA_ARTAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 379

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/383 (37%), Positives = 195/383 (50%), Gaps = 27/383 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY +    V +D    R + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A+K DS DICF+  G     +          GDIV   G  +G H 
Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKIDMTT--GDIVDETGAKVGEHP 233

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQRRGL +      G+P FV+ +    ++V+VGP   L +  I   +++W G 
Sbjct: 234 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGL 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVY-----VDFEKSEVGVASGQA 364
            + E A    F C  ++R+  DPVP   +     ++ GV      V       GVA GQ 
Sbjct: 294 PISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQT 353

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            V Y      +RVLG   I  ++
Sbjct: 354 VVLYQG----SRVLGQATIDAAR 372


>gi|148269543|ref|YP_001244003.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga petrophila RKU-1]
 gi|166235088|sp|A5IJQ4|MNMA_THEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147735087|gb|ABQ46427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga petrophila RKU-1]
          Length = 358

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 18/372 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        +   +K  CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKKVCCSPSDTADAM 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   + V   + D +E FR  VI PF S    G TP PCV CNR VKF  L+      G
Sbjct: 61  RIAHFLGVEIEIVDVKEIFREKVIEPFKSDLLKGLTPNPCVHCNRFVKFGYLMDYVLNQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R       +   R+++ + +DL++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARIEFS---EKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R +A E G+ +A K +SQD+CF+  G   + +K        EGD++   G+++GRH 
Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLKD-EGITLKEGDLITPEGEVVGRHF 236

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YTIGQR+G  +   G   +V       + V+V   E +    +   +  W  +   
Sbjct: 237 GYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE--- 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              V + FKC  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+    
Sbjct: 294 ---VPEEFKCVCRVRKKSEEAPAVVKLRDNEVEVRFEKKVFAVTPGQIAAFYDGDT---- 346

Query: 377 VLGGGIISGSKR 388
           +LGG II    R
Sbjct: 347 LLGGAIIKEGIR 358


>gi|239928784|ref|ZP_04685737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291437105|ref|ZP_06576495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340000|gb|EFE66956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 378

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/385 (36%), Positives = 192/385 (49%), Gaps = 24/385 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           D  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   DTPQPSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +  L   +DG   R + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHYAKVVLR--EDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    KE +R  A   GL +A K DS DICF+  G     +         EGDIV  
Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLANRLGRA--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +G  +G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  + 
Sbjct: 236 SGAKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTALT 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
                W G      A         ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AIRPRWCG-----AAPEGPGTYTAQLRAHGGETEVTAEPVDGELRVRFTEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389
            V Y       RV+G   I+ + RS
Sbjct: 351 IVLYDG----TRVVGSATIATTVRS 371


>gi|78776909|ref|YP_393224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas denitrificans DSM 1251]
 gi|123550559|sp|Q30SP2|MNMA_SULDN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78497449|gb|ABB43989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 341

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 33/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ MSGGVDS+V A  LK +GY+V G+ ++L+++    +             AR+  
Sbjct: 3   KKVLLGMSGGVDSTVSAMFLKEEGYEVEGLYMKLHSNPGYHEIHE--------ARARKAA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  +V D +E F   V  PF  +YA G+TP PC  CNR++KF ++L    ++GAD 
Sbjct: 55  DFLGIKLHVIDLQEIFNEKVFKPFVDTYAKGKTPNPCALCNRSLKFGEMLKFAYKIGADF 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHYI++      DGK         D  +DQSYFLF   ++ L  L FPLGD KK  +
Sbjct: 115 VATGHYIKT------DGKYFYE---ADDDTKDQSYFLFYVNKEILPRLLFPLGDRKKSEI 165

Query: 201 RDLAREM-GLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LA  + GL   A + +S +ICFV+   Y D+++     +   G+++  +G+++G H G
Sbjct: 166 KELAASINGLATFASQRESSEICFVETT-YTDLLQDYVE-VDKVGEVLDTSGKVVGEHKG 223

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P +VV ++ + +++IVG +E L  + + L  +N   D    
Sbjct: 224 YMHYTIGKRRGFSVNGAHDPHYVVSINPDKNQIIVGKKEDLACNSVVLNNLNLYSDE--- 280

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 F   VK+R     +P  V   DD  +V  ++S  GVA GQA VFY  +    ++
Sbjct: 281 ----KSFDTTVKLRYRTKAIPCHVDIIDDKAHVTLKESVFGVAVGQAAVFYDGN----KL 332

Query: 378 LGGGIIS 384
           LGGG I 
Sbjct: 333 LGGGWIE 339


>gi|167721162|ref|ZP_02404398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia pseudomallei DM98]
          Length = 296

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 149/310 (48%), Gaps = 22/310 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK  GYDV+G+ ++ +      +    C   QD  D   V D I + 
Sbjct: 1   MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               ++   +++ V   F   Y+AG TP P V CN  +KF   L     LGA  +ATGHY
Sbjct: 58  VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R R   G     R  + +  D  +DQSYFL    Q QL    FPLG++ K  VR++A +
Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266
           +GL  A K DS  ICF+ +  + D + R        G +   +G+ +G H G+  YT GQ
Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230

Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           R+G+G+       GEP FV   D  S+ + V        L    +    ++W+      +
Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286

Query: 319 AVVDGFKCFV 328
              DG +C  
Sbjct: 287 PPADGARCGA 296


>gi|302554308|ref|ZP_07306650.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736]
 gi|302471926|gb|EFL35019.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736]
          Length = 376

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/387 (36%), Positives = 194/387 (50%), Gaps = 24/387 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           D  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   DTPQRSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +    V +DG   R + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHYAQV--IVHEDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  
Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGKA--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +G  LG H G   +TIGQR+GL +      G+P +V+ +    + V VGP  +L+V  + 
Sbjct: 236 SGAKLGTHEGAFGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPASALDVSALT 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
             +  W G      A         ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AVKPRWCGV-----APTGPGTYTAQLRAHGGETEVTAELVDGSLEVTFSEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391
            V Y       RV+G   I+ +KR+ A
Sbjct: 351 IVLYDG----TRVVGSATIASTKRTPA 373


>gi|268536380|ref|XP_002633325.1| Hypothetical protein CBG06062 [Caenorhabditis briggsae]
          Length = 377

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 188/374 (50%), Gaps = 20/374 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDS+V A LLK+ G+DV+G+ +  ++S++      +C   +D  DAR VC+
Sbjct: 5   RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMINWDSQEEG--SSTCPRSKDEADARNVCN 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V + F  +Y  G T +P +DCN ++KF     V ++   AD 
Sbjct: 63  RLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFDAFHKVAQETFDADF 122

Query: 141 LATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY  +        ++      +    D  +DQ++FL   TQ+QL    FPLG ++K
Sbjct: 123 IATGHYATTSFGDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSLQK 182

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILGR 255
             V+ +A + G   +  K +S  ICF+ + K + D +          G IV  +G+ +G+
Sbjct: 183 SEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDFLDEYIE--PKPGRIVLKDGKQIGK 240

Query: 256 HNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           H+GI  +TIG+R   + L        FV  +  ++  V+         L   R  +   N
Sbjct: 241 HHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGSHHSDLYATRFLINRPN 300

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W+      + +    K   +I+ +  PVP  V++++  + V+ +      + GQ CVFY 
Sbjct: 301 WIPSSDPLEEIS-PSKILCRIQRTHPPVPCKVEKSEHYLSVEPKIPLRATSPGQMCVFY- 358

Query: 370 SDSNEARVLGGGII 383
             + E   LGGG I
Sbjct: 359 --TTENECLGGGEI 370


>gi|221195808|ref|ZP_03568861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium rimae ATCC 49626]
 gi|221184282|gb|EEE16676.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium rimae ATCC 49626]
          Length = 389

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 180/387 (46%), Gaps = 37/387 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V + MSGGVDS++ AALL   G+DV  V ++ ++          C    D+ DA RV  
Sbjct: 7   KVYLGMSGGVDSALSAALLLEQGFDVHAVYMRNWSKDLPGFH---CPWADDLADAERVAV 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ +   V+D E+ ++  V+     SYA G TP P V CN+TVKF          GAD +
Sbjct: 64  SLGIDLAVWDCEKEYKETVVDYLLDSYAHGYTPNPDVMCNQTVKFGTFAKRAFSEGADYI 123

Query: 142 ATGHYIR-----SRLYVGDD------------GKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           ATGHY R          GDD            G     + R  D  +DQ+YFL+    + 
Sbjct: 124 ATGHYARLASGEKNACGGDDANNTTGMAGAMHGSGTSCLMRAADEHKDQTYFLWRVPSEI 183

Query: 185 LCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
                FP+GD+  K  VR +  + GL I +K DS  ICF+        +  ++A     G
Sbjct: 184 FDRTIFPIGDIPTKAEVRAMCADRGLGIENKPDSDGICFIGPVGLRTFL--LDAFERKTG 241

Query: 244 DIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLE 299
           DI+   +G+ LG H+G   +TIGQR+GL V  G   +VV  D N++ V V       +L 
Sbjct: 242 DIIEWESGKKLGEHDGAFLFTIGQRKGLSVGGGPAHYVVATDTNTNTVYVTSDPLSAALW 301

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358
              + + + +W+   +  D         V+ R + +  P  + + +   + + +E     
Sbjct: 302 TKTMDIVDTHWISGCVPADGA-----YTVRTRHTGELRPCMLTKVSATTMRITYEVPVRT 356

Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385
           VA GQ+ VFY         +GGGII  
Sbjct: 357 VAPGQSAVFYDG----LVCIGGGIIER 379


>gi|308491228|ref|XP_003107805.1| hypothetical protein CRE_12780 [Caenorhabditis remanei]
 gi|308249752|gb|EFO93704.1| hypothetical protein CRE_12780 [Caenorhabditis remanei]
          Length = 378

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 185/375 (49%), Gaps = 21/375 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDS+V A LLKR G+DVIGV +  ++S++      +C   +D  DAR VCD
Sbjct: 5   RVVIGMSGGVDSAVSAFLLKRRGFDVIGVHMVNWDSQEEG--TSNCPRSKDESDARNVCD 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V + F  +Y  G T +P +DCN  +KFS    V ++   AD 
Sbjct: 63  KLNIPFHTVNFVKEYWNDVFLRFLENYKMGRTVVPDIDCNHFIKFSAFHKVAQERFDADF 122

Query: 141 LATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY  +         +      +    D  +DQ++FL   TQ+QL    FPLG ++K
Sbjct: 123 IATGHYATTSFGDFQQSRNASEEIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSLQK 182

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILGR 255
             V+ +A + G   +A K +S  ICFV + K + + +          G IV  NG+ +G 
Sbjct: 183 TEVKRIAEQEGFHEVAKKPESMGICFVGKKKRFSEFLDEYIE--PKSGKIVLKNGKKIGN 240

Query: 256 HNGIINYTIGQRRGLGVAMGEP----LFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
           H+GI  +TIG+R   G  + E      FV  ++  +  ++        +L   R  +   
Sbjct: 241 HHGIHQFTIGKRIN-GTYLEERSHFGFFVSEINSETGDIVACEGSHHPNLYATRFLINRP 299

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           +W+ +           +   +I+ +  PV   V+ +D+ + V         A GQ CVFY
Sbjct: 300 SWISNSDDPLKSHPPSEILCRIQRTHPPVSCLVEYSDENLSVIPRIPLRATAPGQMCVFY 359

Query: 369 TSDSNEARVLGGGII 383
              + +   LGGG I
Sbjct: 360 ---TTKNECLGGGEI 371


>gi|281411738|ref|YP_003345817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga naphthophila RKU-10]
 gi|281372841|gb|ADA66403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga naphthophila RKU-10]
          Length = 358

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 18/372 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        +   +K  CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKKVCCSPSDTADAM 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   + V   + D +E FR  VI PF      G TP PC  CNR VKF  L+      G
Sbjct: 61  RIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R       +   R+++ + +DL++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARIEFS---EKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R +A E G+ +A K +SQD+CF+  G   + +K        +GDI+   G+++GRH 
Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLKD-EGITLKDGDIITPEGEVVGRHF 236

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YTIGQR+G  +   G   +V       + V+V   E +    +   +  W  +   
Sbjct: 237 GYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE--- 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              V + F+C  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+    
Sbjct: 294 ---VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVRFEKKVFAVTPGQIAAFYDGDT---- 346

Query: 377 VLGGGIISGSKR 388
           +LGG II    R
Sbjct: 347 LLGGAIIKEGIR 358


>gi|237714361|ref|ZP_04544842.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445525|gb|EEO51316.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 353

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 181/369 (49%), Gaps = 33/369 (8%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGG+DS+    +L+  GY+++GVT++++                   DAR + + +
Sbjct: 1   MVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARELAERM 46

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L    +AT
Sbjct: 47  GIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVAT 106

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R      ++      +    D ++DQSYFL+   Q  L    FPLGD  K  VR+ 
Sbjct: 107 GHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKVKVREY 161

Query: 204 AREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGI 259
             E G +    + +S ++CF+ +G Y D ++     +  E   G  V+  G  LG+H G 
Sbjct: 162 LAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVKLGKHKGA 220

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+GL +A+G+P +V+ ++   + V++G  + LE   +   +       + E  
Sbjct: 221 PYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKIVDERE 276

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +       V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY       RVL
Sbjct: 277 LFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG----RRVL 332

Query: 379 GGGIISGSK 387
           GG  I+  +
Sbjct: 333 GGAFIASQR 341


>gi|21223845|ref|NP_629624.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces coelicolor A3(2)]
 gi|256785060|ref|ZP_05523491.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces lividans TK24]
 gi|289768953|ref|ZP_06528331.1| tRNA methyl transferase [Streptomyces lividans TK24]
 gi|6226260|sp|O86583|MNMA_STRCO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3402255|emb|CAA20191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces coelicolor A3(2)]
 gi|289699152|gb|EFD66581.1| tRNA methyl transferase [Streptomyces lividans TK24]
          Length = 376

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/390 (35%), Positives = 191/390 (48%), Gaps = 24/390 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           +  +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   ETPQRTRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +  L         R + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHYAQVILR----EDGVRELHRASDMAKDQSYVLGVLDDRQLAHAMF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  
Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGNTQGFLADRLGKA--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G  LG H G   YTIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  + 
Sbjct: 236 AGNRLGTHEGAYGYTIGQRKGLRIGTPAPDGKPRYVLDISPVNNTVTVGPAEALDVDALR 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
             +  W G      A         ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AIKPRWCG-----AAPTGPGTYTAQLRAHGGETEVRAELVDGTLEVTFSEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
            V Y       RV+G   I+ + R+ A   
Sbjct: 351 IVLYDG----TRVVGSATIASTTRATAGAA 376


>gi|241557997|ref|XP_002400368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
 gi|215501775|gb|EEC11269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ixodes scapularis]
          Length = 384

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 180/380 (47%), Gaps = 20/380 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV  MSGGVDSSV A LL++ GYDV GV ++ ++   A      C    D  DA+ VCD
Sbjct: 7   KVVCGMSGGVDSSVAAFLLRKSGYDVTGVFMRNWDPHDADSH---CDLDADETDAKWVCD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
           T+ +     D+ + + + V  P    Y  G TP P + CNR +KF        ++ GAD 
Sbjct: 64  TLGIPFMTVDFVKPYWHNVFSPMLQEYQDGLTPNPDIMCNRVIKFGAFHRHAVKRFGADA 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R            + + +D  +DQS+FL    Q  L    FPLG+  K  V
Sbjct: 124 VATGHYARIRNLPD----GSVELLQGVDPVKDQSFFLSQVGQAALQRTLFPLGEATKGQV 179

Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           + LAR +GL  +ADK +S  +CF+ +  +   V++        G  V +  G+++G H+G
Sbjct: 180 KALARSLGLHRVADKKESMGMCFIGKQDFQSFVEKYVE--PKRGTFVDIETGKVVGSHSG 237

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGL 315
           +  +T+GQR  LG  +    FV  L   + +++V       +L    +     +W+   L
Sbjct: 238 VHAWTLGQRCRLG-GLRSAYFVARLCPITQQILVASGWDHPALRWREMRTGAPHWIRLPL 296

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                    +C  K +    PVP  V +  D G+ V  +  +  ++ GQ  VFY  D   
Sbjct: 297 VGGGGPPLARCLFKSQHLDPPVPCTVAEGPDGGLAVLLDHHKRAISPGQFAVFYGED--- 353

Query: 375 ARVLGGGIISGSKRSDAVEE 394
           ++  G   I+    S   E+
Sbjct: 354 SQCFGSAKITELGPSLYEEQ 373


>gi|33861847|ref|NP_893408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|81572901|sp|Q7TTQ1|MNMA_PROMP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33640215|emb|CAE19750.1| tRNA methyl transferase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 390

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/384 (36%), Positives = 213/384 (55%), Gaps = 32/384 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K+ K  +++V +SGGVDSS+ AALL  DG+ V G+TL L       K +GSCC+ + + 
Sbjct: 18  NKSKKQQKIIVGLSGGVDSSLSAALLIEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-T 133
           DA  +C+ + ++H + D    F   V+      Y +G TPLPC  CN+ VKF ++L+   
Sbjct: 71  DAAGLCEDLGINHNILDSRVIFEREVVKKTTEGYESGFTPLPCSMCNKNVKFEEMLNFVI 130

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRR-------RIMCRPMDLERDQSYFLFATTQQQLC 186
           +Q     +ATGHY R +    ++ K          ++ R  D  +DQSYFL++ +Q+ L 
Sbjct: 131 KQKEFTYIATGHYARVQKVSCENIKNYENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDI 245
            L  PLG++KKE  R  A  +GL  A K +SQD+C V+   Y  + K I+  I   EG+I
Sbjct: 191 RLILPLGNLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHIEPKEGEI 248

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            H+NG+ILG HNGI ++TIGQR+GLG+A  EPL+V  LDK  + V V  ++ L      +
Sbjct: 249 KHINGEILGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKKDLFKREAII 308

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGV 359
           +EINW+      +A +   +   +IR   +PV   +    +         + FE ++  +
Sbjct: 309 KEINWVSI----EAPLKEIEVEAQIRYRSEPVKGILVPVKNEDNLTKKFKLIFEDNQSSI 364

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
             GQA VFY  +     +LGGG+I
Sbjct: 365 TPGQAAVFYKDEI----LLGGGLI 384


>gi|237711510|ref|ZP_04541991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|237726033|ref|ZP_04556514.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. D4]
 gi|265752935|ref|ZP_06088504.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|229435841|gb|EEO45918.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides dorei 5_1_36/D4]
 gi|229454205|gb|EEO59926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|263236121|gb|EEZ21616.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 351

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 24/372 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +   + +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          +
Sbjct: 1   MKEAEPNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKGNDTEY---------L 51

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +C+ + + H  +D    FR  +I  F + Y AG TP+PC  CN  +K+  L  ++
Sbjct: 52  EDARTLCERLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRIS 111

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++G    ATGHY+R RL  G        +    D ++DQS+FL+   Q+ L  +  P+G
Sbjct: 112 DEMGIYHFATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMG 166

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++ K  VR++A E G L  A K DS  +CF        + K +  G  L G      G  
Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + RH G   YTIGQRRGLG+ +   +FV  +    ++VI+   ++LE   + L+E     
Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITN 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
             L    +++     VKIR  +      V    D+ ++V   +    +A GQA  FY  D
Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342

Query: 372 SNEARVLGGGII 383
                VLGGGII
Sbjct: 343 V----VLGGGII 350


>gi|26554279|ref|NP_758213.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma penetrans HF-2]
 gi|30173413|sp|Q8CXQ3|MNMA_MYCPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|26454288|dbj|BAC44617.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Mycoplasma penetrans HF-2]
          Length = 370

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 32/380 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASKRKGSCCAGQD 72
            +V+V +SGGVDSSV A LLK  GYDV+GV +Q ++        +     +  +C A  D
Sbjct: 2   KKVIVGISGGVDSSVSAYLLKLRGYDVMGVFMQNWDPYINKESNNDAIKSKLDTCEAEYD 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              A +VC  + +     ++ + + + V  PF   Y  G TP P + CN+ +KF      
Sbjct: 62  YQIASKVCQRLGIKLERINFIKEYWDMVFEPFLDEYKKGLTPNPDILCNKYIKFGAFHKY 121

Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +    D +ATGHY   R    ++      +    D+E+DQ+YFL +  Q QL    FP
Sbjct: 122 CFENFDCDYIATGHYADVRFNQANN---IYELLEAKDIEKDQTYFLCSLNQSQLSKSIFP 178

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250
           L D+ K+ VR++A ++GLD  DK DS  ICF+ +  + + +          G I+ ++  
Sbjct: 179 LADLTKKEVREIANKIGLDNWDKKDSTGICFIGERNFKNFLHNYIDK--KPGKIIDIDTS 236

Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES----LEVHRIYL 305
           + +G H GI  YTIGQR+GL +       FV   D +++ + V   ES    L       
Sbjct: 237 KEVGTHEGIHFYTIGQRKGLNLGGNSSRYFVCKKDISNNILYVTSNESKLKNLSSVVATC 296

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
              NW+G       V +  K  ++IR S++ +    +   D  V  +F+  EV ++ GQ 
Sbjct: 297 SYFNWIG------YVPNNNKVEIRIRHSKNKINGHFKILKDNVVQFEFDSPEV-ISPGQY 349

Query: 365 CVFYTSDSNEARVLGGGIIS 384
            V Y     +   LGGG I 
Sbjct: 350 IVAYQ----KGVCLGGGPIK 365


>gi|319441115|ref|ZP_07990271.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium variabile DSM
           44702]
          Length = 364

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 196/379 (51%), Gaps = 21/379 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDSSV AA    +G++VIGV L L  S +A       CC+ +D  DARRVCD++ +
Sbjct: 1   MSGGVDSSVAAARALAEGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRVCDSLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SY  GETP PC+ CN  +KF  LL  +  LG D + TGH
Sbjct: 61  PFYVWDFSDRFKADVIDNFVESYEIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y +    V         + R +D  +DQSY L   T +QL    FP+GD  K ++R  A+
Sbjct: 121 YAQLHDGV---------LRRGIDDNKDQSYVLGVLTDEQLAHCMFPVGDTVKPAIRAEAK 171

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           ++G+ +A K DS DICF+  G+    +          G +  + G+ L  H+G+  +TIG
Sbjct: 172 DLGMGVASKPDSHDICFIPDGRTQAFLG--TKIGMRPGIVQSVEGETLAEHDGVYGFTIG 229

Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GLG+    A G+P +V  ++ ++  V VG +  L +  I    +      L      
Sbjct: 230 QRKGLGLPGPAADGQPRYVTDINASTGTVTVGRKRDLRIGHITADRL----KRLDPAKHG 285

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +  +C V++R+    VP       D V ++  +   GVA GQA V Y  D+    ++G G
Sbjct: 286 ETLECEVQVRAHGGVVPATATLTSDAVELELHEPLQGVARGQAAVVYLPDAEGDILIGSG 345

Query: 382 IISGSKRS-DAVEESLLSV 399
            IS +    D VE    S 
Sbjct: 346 TISATAPWVDDVESGAQSA 364


>gi|111023428|ref|YP_706400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus jostii RHA1]
 gi|122955129|sp|Q0S2J4|MNMA_RHOSR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110822958|gb|ABG98242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus jostii RHA1]
          Length = 364

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/373 (38%), Positives = 200/373 (53%), Gaps = 23/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F +SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY +    V         + R +D ++DQSY L   T +QL    FP+GD  K+
Sbjct: 120 DAVATGHYAQLENGV---------LRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257
            +R+ A E GL +A+K DS DICF+  G     +          G +V  + G++L  H 
Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSGDTRAFLGARIG--VRPGSVVDADSGEVLAEHE 228

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLGV    A G+P +V  ++ ++  V VG   +LEV  I      W   
Sbjct: 229 GVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPDTGTVRVGSARNLEVDAITADRAVWTSG 288

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                  V   +C V++R+         +  D G+ +   +   GVA GQA V Y +D  
Sbjct: 289 S----TPVGPVECTVQVRAHGGLAEAVAEAVDGGIAISLREPLTGVAKGQAVVLYRTDPA 344

Query: 374 EARVLGGGIISGS 386
              VLG G ISG+
Sbjct: 345 GDIVLGSGTISGT 357


>gi|157413852|ref|YP_001484718.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9215]
 gi|205816917|sp|A8G6A1|MNMA_PROM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157388427|gb|ABV51132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 385

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 204/376 (54%), Gaps = 32/376 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEKEVIKKTTESYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138

Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R +     +         +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARIKKSSYVEKLDCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  + + I+  I   EG+I+H+NG++L
Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G HNGI ++T+GQR+GLG+A  +PL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GTHNGIQHFTVGQRKGLGIAWPKPLYVKSLDRGKNIVYVADKSDLFNKEAIISKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367
                      +   +IR    PV   +    +         + FE+++  +  GQA VF
Sbjct: 317 V----EPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKNFKLIFEENQSSITPGQAAVF 372

Query: 368 YTSDSNEARVLGGGII 383
           Y  D     +LGGG+I
Sbjct: 373 YKGDI----LLGGGLI 384


>gi|123969022|ref|YP_001009880.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           AS9601]
 gi|205816921|sp|A2BSL2|MNMA_PROMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123199132|gb|ABM70773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. AS9601]
          Length = 385

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/377 (36%), Positives = 205/377 (54%), Gaps = 32/377 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++V +SGGVDSS+ AALL   G++V G+TL L       K +GSCC+ + + DA  +C+ 
Sbjct: 26  IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141
           + ++H + D  E F   VI     SY  G TPLPC  CN+ VKF ++L+    +     +
Sbjct: 79  LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAISKKDFTHI 138

Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ATGHY R                 +  ++ R  D  +DQSYFL++ +Q+ L  L FPLG+
Sbjct: 139 ATGHYARINKSSYATTLDCKNLVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253
           MKKE  R  A  +GL  A K +SQD+C V+   Y  +   I+  I   EG+IVH+NG++L
Sbjct: 199 MKKEDTRREALRLGLRTAQKPESQDLCLVEH--YGSMQIFIDKHIEPKEGEIVHVNGKVL 256

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+HNGI ++T+GQR+GLG+A  EPL+V  LD+  + V V  +  L      + ++NW+  
Sbjct: 257 GKHNGIQHFTVGQRKGLGIAWPEPLYVKSLDRLKNIVYVADKSDLFNKEAIISKVNWVSI 316

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367
               +      +   +IR   +PV   +    +         + FE+S+  V  GQA VF
Sbjct: 317 ----EEPEQEIEVQAQIRYRSNPVKGTLIPLKNLDNTTTTFKLIFEESQSSVTPGQAAVF 372

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +     +LGGG+IS
Sbjct: 373 YKGEI----LLGGGLIS 385


>gi|328947275|ref|YP_004364612.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM
           2489]
 gi|328447599|gb|AEB13315.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM
           2489]
          Length = 406

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/416 (32%), Positives = 202/416 (48%), Gaps = 46/416 (11%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----RKAS 61
             +   +L+   K  RVVV +SGGVDS++ A LLK  G DV  VT+ L+           
Sbjct: 4   NSMTYEELELPKKGDRVVVGLSGGVDSTMTAMLLKEKGCDVTCVTMSLWQEADLNLPDDY 63

Query: 62  KRKGSCCAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
           K   SC + ++V D    R+ C    + + V D +E+++  VI  F   Y  G TP PC+
Sbjct: 64  KIPDSCYSPKEVEDIEENRKFCAEQGIPYVVVDVKEKYQQEVIEYFKREYRNGRTPNPCI 123

Query: 119 DCNRTVKFSDLLSVTRQLGA--DVLATGHYIRSR-------LYVGDDGK-------RRRI 162
            CNR +KF  +LS  + LG   D   TGHY ++        L  G++         R   
Sbjct: 124 RCNRFIKFGAMLSGLKDLGIEYDYFCTGHYAKAVRGTEPLFLVYGENASKDERGKCRPVQ 183

Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
           +   +D+ +DQ+YFL+      L  +RFPL    K+ +  +ARE GL  A+K +SQD   
Sbjct: 184 IHTALDITKDQAYFLYRIPSAILEKVRFPLASFSKKEIFKMARERGLKAAEKEESQDFIP 243

Query: 223 VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282
               +Y           ++ GD + L+G++LGRH GI +YTIGQRRGLGV+   PL+V  
Sbjct: 244 APMLEYM-----FKDKPSVPGDFIDLDGKVLGRHKGIEHYTIGQRRGLGVSAPYPLYVAE 298

Query: 283 LDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV- 341
           +DK  + V++G    L    +   ++ W  D          F   VKIR +  PV   V 
Sbjct: 299 IDKEKNLVVLGKDSDLFCSGLIADDLVWPADYD----PCCEFDAMVKIRLASKPVKAHVV 354

Query: 342 --QRNDDG------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
             Q  ++         V F++ +  VA GQ+ VFY         LGGGIIS + ++
Sbjct: 355 PYQPLENEEFCGKSYKVVFDEPQRAVAPGQSIVFYKDGIT----LGGGIISKAIKA 406


>gi|294055153|ref|YP_003548811.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614486|gb|ADE54641.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 356

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 179/366 (48%), Gaps = 17/366 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+VA+SGGVDS+V A LLK  GY V G  ++ + + +A      C A QD+ D+R V 
Sbjct: 2   QKVLVALSGGVDSAVAALLLKEQGYAVSGAYIRTWMNEEAP--LADCPAQQDIEDSRAVA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + + + +    +   V+      Y  G TP P + CNR +KF    +     G D 
Sbjct: 60  QHLGIDYEIVNLVNEYSEHVVNYLVDGYKRGITPNPDMMCNREMKFGIFQNYALSQGFDA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R   +  +DG     +   +D  +DQ+YFL    Q+Q+    FP+G+++K  V
Sbjct: 120 MATGHYVRK--FKNEDGS--FNLLEGIDKNKDQTYFLALLKQEQIAKALFPVGELQKPRV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+LA E  L  A K DSQ ICF+        ++         G+IV+  G++LG+H G+ 
Sbjct: 176 RELAIEHQLPNAAKKDSQGICFLGDMNINRFLEHYIED--RPGNIVNPEGKVLGQHRGLH 233

Query: 261 NYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            YT+GQRRG+GV      E   VV  +   + +IV   ++ +   ++ +E+   G     
Sbjct: 234 RYTMGQRRGIGVPSNTDNEFYVVVGFNMEQNELIVA-FDNPDSPGLFTQEVEVYGLSFVN 292

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
             V +  +   K R       +       D   V F++ +  +ASGQ    Y  ++    
Sbjct: 293 KPVTEACRLLAKPRYRDSSQAITYTPTGPDSAKVVFDEPQRALASGQILALYEGET---- 348

Query: 377 VLGGGI 382
           +LGGG 
Sbjct: 349 LLGGGF 354


>gi|54026238|ref|YP_120480.1| tRNA-specific 2-thiouridylase MnmA [Nocardia farcinica IFM 10152]
 gi|81602523|sp|Q5YRS5|MNMA_NOCFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54017746|dbj|BAD59116.1| putative tRNA methyl transferase [Nocardia farcinica IFM 10152]
          Length = 372

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/378 (38%), Positives = 200/378 (52%), Gaps = 22/378 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DARR
Sbjct: 2   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F ++YAAGETP PC+ CN  +KFS L      LG 
Sbjct: 61  AADVLGIPFYVWDFADRFKEDVIDDFVAAYAAGETPNPCLRCNEKIKFSALADRAVALGF 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R    V         + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 121 DAVVTGHYARLSDGV---------LRRAVDADKDQSYVLAVLTAEQLARAMFPVGDTPKP 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A E GL +A+K DS DICF+  G     +          G +V  +GQ+L  H G
Sbjct: 172 QIRAEAAERGLAVANKPDSHDICFIPSGDTRAFLGARIG--IRPGAVVDADGQVLAEHEG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+    A G+P +V  +D  S  V VG  E L+V ++      W    
Sbjct: 230 VHGFTIGQRKGLGLPGPAADGKPRYVTDIDPASGTVRVGSAEDLQVRQVRAERAVWTSGR 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             E  +     C  ++R+     P   +  D G+ V   +   GVA GQA V Y  D   
Sbjct: 290 TPEGPI----DCVAQVRAHGGTAPATAEAVDGGLVVRLHEPLTGVAKGQAVVLYRPDPLG 345

Query: 375 ARVLGGGIISGSKRSDAV 392
             VLG G ISG+ R+ A+
Sbjct: 346 DEVLGSGTISGTARTHAL 363


>gi|154250437|ref|YP_001411262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fervidobacterium nodosum Rt17-B1]
 gi|205816865|sp|A7HNX2|MNMA_FERNB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|154154373|gb|ABS61605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 348

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 185/366 (50%), Gaps = 24/366 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARR 78
           +V V +SGGVDS+V   LL   GY+V    ++         ++     CC+  D +DA+ 
Sbjct: 4   KVGVLLSGGVDSAVALYLLIEKGYEVTAYHMKTVRDELYITKQIKHKVCCSPSDTHDAQL 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     V   +   E+ F+  +I  F S   AG+TP PC  CN  +KF  ++ V    G 
Sbjct: 64  IAKKFGVPFKIIHVEDVFKEKIIDYFISENLAGKTPNPCFFCNDYIKFGFVMDVALSDGM 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A+GHY R       +GK    + R +D E+DQSYFL +  +++L  +  P G+  KE
Sbjct: 124 DFVASGHYARIL-----NGK----LYRALDKEKDQSYFLASIKKEKLSKILLPNGEYSKE 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++RD+A   G+ +A K DSQD+CF+    +    +     I   G+I+   G+I+G+H G
Sbjct: 175 TIRDIAERAGIHVAKKIDSQDLCFLPDNDFKSFFEERGVKIE-PGNIITSEGKIIGKHEG 233

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YTIGQR+ LGVA G+ L+V   +   + ++V P + +  + + ++ +N   D     
Sbjct: 234 LPFYTIGQRK-LGVAAGQKLYVKAKNVEGNFIVVSPLDEVYQNEMRVKNLNIYVD----- 287

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            + D F   VKIR     VP  V+   D + V F +    V  GQ  VFY  D     VL
Sbjct: 288 -LPDEFLATVKIRKKFKEVPCRVEYLKDELKVQFLEPVFAVTPGQIAVFYNED----EVL 342

Query: 379 GGGIIS 384
             G+I 
Sbjct: 343 CSGVIE 348


>gi|295836383|ref|ZP_06823316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. SPB74]
 gi|295825995|gb|EDY45586.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. SPB74]
          Length = 385

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/386 (35%), Positives = 191/386 (49%), Gaps = 24/386 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
            +  + ++V+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 6   PRPLRPLKVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 64

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 65  SRDARRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 124

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY R  +         R + R  D+ +DQSY L     +QL    FPL
Sbjct: 125 ALALGFDAVCTGHYARVLIRPD----GSRELHRASDMAKDQSYVLGVLDDRQLAHAMFPL 180

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  +G
Sbjct: 181 GDTETTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA--EGDIVDEDG 238

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             LG H G   +TIGQR+GL +      G+P +V+ +    + V VGPR SL+V  +   
Sbjct: 239 TRLGTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRASLDVASLTAV 298

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
              W G      A +   +   ++R+      V  +     + V+F+    GVA GQA V
Sbjct: 299 RPRWCG-----TAPLTAGRYTAQLRAHGGESDVRAELAGGELRVEFDAPVRGVAPGQAVV 353

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392
            Y       RV+G   I+ +++ +  
Sbjct: 354 LYDG----TRVVGSATIATTRKPEPA 375


>gi|237724458|ref|ZP_04554939.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. D4]
 gi|229437327|gb|EEO47404.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides dorei 5_1_36/D4]
          Length = 364

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/369 (30%), Positives = 180/369 (48%), Gaps = 26/369 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A+ + + + + 
Sbjct: 1   MSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQ-DEPDDVLEAKALAERLGIE 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q     ++TGHY
Sbjct: 60  HHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R      ++ K +  +    D  +DQSYFL+   Q+ L    FPLG   K+ VR+  R+
Sbjct: 120 CRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYTKQEVREYLRQ 174

Query: 207 MGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGRHNGIINY 262
            G +  A   +S +ICF++ G Y + ++     I      G  V+  G  +G+H G   Y
Sbjct: 175 KGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVKIGQHKGFPYY 233

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +          + D
Sbjct: 234 TIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH-------ITEMQD 286

Query: 323 GFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY       RVL
Sbjct: 287 LLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYEG----KRVL 342

Query: 379 GGGIISGSK 387
           GG  I+  +
Sbjct: 343 GGAFIASQR 351


>gi|195867812|ref|ZP_03079812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660509|gb|EDX53766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 350

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 180/359 (50%), Gaps = 31/359 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQD 72
             RVV+ +SGGVDSSV A LLK+ GY+VIG+ +  ++       +R++ K+   C +  D
Sbjct: 6   KKRVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELD 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DA+ V   I +  Y  ++ + + N V   F S Y    TP P + CN+ +KF   L+ 
Sbjct: 66  YQDAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNY 125

Query: 133 TR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + +L AD +A GHY + +            + +  D+ +DQ+YFL    Q QL +  FP
Sbjct: 126 AKNELKADYIAMGHYAKVKH-----TNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFP 180

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           +GD+ K+ VR +A+E GL  A+K DS  ICF+ +  +   ++         G+IV+ +N 
Sbjct: 181 IGDLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYFLENYIPN--QPGEIVNIVNN 238

Query: 251 QILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYL 305
           QI+G H G + YTIGQR+GL    M E +FV   D N   + V P     + L  ++  +
Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSPLSLEDQYLISNQALV 298

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVAS 361
             +N++     +  +       V+ R  Q+ V V       N + V +++ +    +  
Sbjct: 299 ENMNFIEPYNPQIPI------SVRFRHRQNLVVVNSFLCIENTNNVLINY-EPAKAITP 350


>gi|260577537|ref|ZP_05845477.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258604341|gb|EEW17578.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 389

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 189/383 (49%), Gaps = 38/383 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V A+     G++VIGV L L  S +A       CC+ +D  DARRV D + +
Sbjct: 1   MSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRVADKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL  +  LG D + TGH
Sbjct: 61  PFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R    V         M R +D  +DQSY L   T +QL    FP+GD  K  +R+ A+
Sbjct: 121 YARLHDGV---------MRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPEIREEAK 171

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           + G  +A K DS DICF+  G+    + +        G +   +G  +  H+G+  +TIG
Sbjct: 172 DHGFGVASKPDSHDICFIPDGQTQAFLGKKIGL--RPGLMKDQDGSTVAEHDGVYGFTIG 229

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GLG+      G+P +V  +D  +  V +G R+ L V  I    +  L   +      
Sbjct: 230 QRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRLDPAVH----G 285

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD------------------GVYVDFEKSEVGVASGQ 363
             F+C V++R+    VP   +  DD                   + +D  +   GVA GQ
Sbjct: 286 REFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEGESPWRLELDLHEPLQGVARGQ 345

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           A V Y  D+    +LG G I  +
Sbjct: 346 AAVVYQPDAEGDILLGSGTIRAT 368


>gi|205822051|sp|A4FMT5|MNMA_SACEN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 191/374 (51%), Gaps = 19/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V+GV L L +++  + R G   CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   VI  F   YAAG TP PC+ CN  +KF  LL     LG 
Sbjct: 60  AADILGIPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R  +  G       ++ R  D  +DQSY L + T +QL    FPLGD  K 
Sbjct: 120 DAVCTGHYARLTVEDG-----VPVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKS 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR  A E GL +A K DS DICF+  G     ++         G +V    G +LG H 
Sbjct: 175 QVRQEAAERGLAVAKKPDSHDICFIPDGDTKKFLESKLGQ--KPGQLVDAETGAVLGEHT 232

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +T+GQR+GLG+      G P +V+ L+  S  V VG  + L V  I  +   W   
Sbjct: 233 GVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIW--- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +  +    +C V++R+         +  D G+ +   +   GVA GQA V Y  +  
Sbjct: 290 -PSQRELDGPTECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEE 348

Query: 374 EARVLGGGIISGSK 387
              VLG  +I+ ++
Sbjct: 349 GDLVLGSALIAATR 362


>gi|320168110|gb|EFW45009.1| tRNA methyl transferase [Capsaspora owczarzaki ATCC 30864]
          Length = 647

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 180/440 (40%), Gaps = 71/440 (16%)

Query: 8   RLNSLDLDKNPK----------DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           RL+S DL++ P+            RV V +SGGVDS+V A LLKR G DVIGV ++ ++ 
Sbjct: 189 RLDSRDLEQIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 248

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
              +   G C   QD+ DA   C  + +     ++ + + N V   F   Y  G TP P 
Sbjct: 249 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 305

Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDG-KRRRIMCRPMDLERDQSY 175
           + CNR +KF  LL+V +   GA  LATGHY          G      +    D  +DQ+Y
Sbjct: 306 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAHDKAKDQTY 365

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR 234
           FL A + + L    FPL  ++K  V+ +A E+GL +++ K +S  ICFV + ++   +  
Sbjct: 366 FLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGKRRFDRFISN 425

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                   G I   +G I+G+H G   YT+GQ RGL     +   VV  D   + VIV  
Sbjct: 426 YI--APQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVIVTK 482

Query: 295 RES-------------------------------------LEVHRIYLREINWLGDGLF- 316
             +                                     +    I +   +W+      
Sbjct: 483 ASAISRAYKIFGDTVNKSGTTAVPAKLVDASNLAEPDPSCMYSRSIVVSAPSWIAGVPPL 542

Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQACV 366
             +       +C  + R     VP  V    D         +++  ++    VA GQ   
Sbjct: 543 ELQGGQGQQLRCGARFRHRAPIVPCTVTLQSDESGQASPVKLHIQLDRPFAAVAPGQFAA 602

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y         LGGG I  +
Sbjct: 603 LYLD----GVCLGGGDIVET 618


>gi|15643286|ref|NP_228330.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga maritima MSB8]
 gi|8134745|sp|Q9WYZ0|MNMA_THEMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4981033|gb|AAD35605.1|AE001728_6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga maritima MSB8]
          Length = 358

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 18/372 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        K++     CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIKKEIKKKVCCSPSDTADAM 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+   + V   + D +E FR  VI PF      G TP PC  CNR VKF  L+      G
Sbjct: 61  RIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R       +   R+++ + +DL++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARIEFS---EKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R +A E G+ +A K +SQD+CF+  G   + +K        +GDI+   G+++GRH 
Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLKD-EGITLKDGDIITPEGEVVGRHF 236

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YTIGQR+G  +   G   +V       + V+V   E +    +   +  W  +   
Sbjct: 237 GYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE--- 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              V + F+C  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+    
Sbjct: 294 ---VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVSFEKKVFAVTPGQIAAFYDGDT---- 346

Query: 377 VLGGGIISGSKR 388
           +LGG II    R
Sbjct: 347 LLGGAIIKEGIR 358


>gi|320168295|gb|EFW45194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capsaspora owczarzaki ATCC 30864]
          Length = 554

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 179/440 (40%), Gaps = 71/440 (16%)

Query: 8   RLNSLDLDKNPK----------DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57
           RL+S DL+  P+            RV V +SGGVDS+V A LLKR G DVIGV ++ ++ 
Sbjct: 96  RLDSRDLEPIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 155

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
              +   G C   QD+ DA   C  + +     ++ + + N V   F   Y  G TP P 
Sbjct: 156 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 212

Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDG-KRRRIMCRPMDLERDQSY 175
           + CNR +KF  LL+V +   GA  LATGHY          G      +    D  +DQ+Y
Sbjct: 213 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAHDKAKDQTY 272

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR 234
           FL A + + L    FPL  ++K  V+ +A E+GL +++ K +S  ICFV + ++   +  
Sbjct: 273 FLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGKRRFDRFISN 332

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                   G I   +G I+G+H G   YT+GQ RGL     +   VV  D   + VIV  
Sbjct: 333 YI--APQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVIVTK 389

Query: 295 RES-------------------------------------LEVHRIYLREINWLGDGLF- 316
             +                                     +    I +   +W+      
Sbjct: 390 ASAISRAYKIFGDTVNKSGTTAVPAKLVDASNLAEPDPSCMYSRSIVVSAPSWIAGVPPL 449

Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQACV 366
             +       +C  + R     VP  V    D         +++  ++    VA GQ   
Sbjct: 450 ELQGGQGQQLRCGARFRHRAPIVPCTVTLQSDESGQASPVKLHIQLDRPFAAVAPGQFAA 509

Query: 367 FYTSDSNEARVLGGGIISGS 386
            Y         LGGG I  +
Sbjct: 510 LYLD----GVCLGGGDIVET 525


>gi|33240814|ref|NP_875756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|81664194|sp|Q7VAT9|MNMA_PROMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33238343|gb|AAQ00409.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 406

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 197/384 (51%), Gaps = 38/384 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSS+ AALL   G++V G+TL L +       KGSCC    + DA  +C+ 
Sbjct: 39  IAVGLSGGVDSSLTAALLVEAGWNVEGITLWLMS------GKGSCCT-DGLVDAAGICEQ 91

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + + H+V D  E F+  +I      Y  G TP PC  CNR VKFS +L    Q LG   +
Sbjct: 92  LGIPHHVIDARETFQREIIESLVKGYQEGMTPSPCSKCNRFVKFSPILEWAEQNLGLKRI 151

Query: 142 ATGHYIRSRL--------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ATGHY R +            ++  RR  + R +D  +DQSYFL+  +Q+ L  + FPLG
Sbjct: 152 ATGHYARIKHLQEPIKISSAKENQIRRHQLLRGLDQNKDQSYFLYDLSQEILEKVIFPLG 211

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++KK   R  A  + L  A+K +SQD+C  +  G     +          G+I+  NGQ+
Sbjct: 212 ELKKADTRKEASRIELRTAEKPESQDLCLAEHHGSMKAFLDEYI--SPRNGEILLSNGQL 269

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG+H+GI ++TIGQR+GLG+A  EPL V+ +  +++RVIV PR         +  INW+ 
Sbjct: 270 LGQHDGIEHFTIGQRKGLGIAWKEPLHVIEIQSSTNRVIVAPRSEASRDNCTVGSINWVS 329

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--------NDDGVY---VDFEKSEVGVAS 361
                   +      V++R    PV   +           +D  Y   + F+  +  +  
Sbjct: 330 IEPPSKKTI----VEVQLRYRSKPVLATLTPIKPLKKDIENDRPYRCNLQFQSEQFSITP 385

Query: 362 GQACVFYTSDSNEARVLGGGIISG 385
           GQA VFY  +     +LGGGII G
Sbjct: 386 GQAAVFYEGEI----LLGGGIIEG 405


>gi|237709059|ref|ZP_04539540.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456755|gb|EEO62476.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 364

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/369 (30%), Positives = 180/369 (48%), Gaps = 26/369 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DSS    +L+  GY+V+GVT++ ++        G      DV +A+ + + + + 
Sbjct: 1   MSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEAKALAERLGIE 59

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H+V D  + F+  ++  F   Y  G TP PCV CN   K   L     Q     ++TGHY
Sbjct: 60  HHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTGHY 119

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R      ++ K +  +    D  +DQSYFL+   Q+ L    FPLG   K+ VR+  R+
Sbjct: 120 CRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYTKQEVREYLRQ 174

Query: 207 MGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGRHNGIINY 262
            G +  A   +S +ICF++ G Y + ++     I      G  V+  G  +G+H G   Y
Sbjct: 175 KGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVKIGQHKGFPYY 233

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GL +A+G P +V+ ++   + V++G  E L+   + + + +          + D
Sbjct: 234 TIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH-------ITEMQD 286

Query: 323 GFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             +C    V+IR    P+P  V   D+  + V F      +A GQ+ VFY       RVL
Sbjct: 287 LLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYEG----KRVL 342

Query: 379 GGGIISGSK 387
           GG  I+  +
Sbjct: 343 GGAFIASQR 351


>gi|212692213|ref|ZP_03300341.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855]
 gi|212665090|gb|EEB25662.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855]
          Length = 351

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 183/372 (49%), Gaps = 24/372 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +   + +V++ MSGG DSSV A LL+  GY+V G+T + Y     ++          +
Sbjct: 1   MKEAEPNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKGNDTEY---------L 51

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DAR +C+ + + H  +D    FR  +I  F + Y AG TP+PC  CN  +K+  L  ++
Sbjct: 52  EDARTLCERLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRIS 111

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++G    ATGHY+R RL  G        +    D ++DQS+FL+   Q+ L  +  P+G
Sbjct: 112 DEMGIYHFATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMG 166

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           ++ K  VR++A E G L  A K DS  +CF        + K +  G  L G      G  
Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           + RH G   YTIGQRRGL + +   +FV  +    ++VI+   ++LE   + L+E     
Sbjct: 227 IARHKGYPFYTIGQRRGLDIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITN 286

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
             L    +++     VKIR  +      V    D+ ++V   +    +A GQA  FY  D
Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342

Query: 372 SNEARVLGGGII 383
                VLGGGII
Sbjct: 343 V----VLGGGII 350


>gi|319957080|ref|YP_004168343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419484|gb|ADV46594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
          Length = 340

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 199/367 (54%), Gaps = 33/367 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+V MSGGVDS+V A LL+++GY+V+GV ++L+++             ++   ARRV
Sbjct: 3   EKKVLVGMSGGVDSTVAALLLQKEGYEVVGVYMKLHDNEA--------YHRENYAKARRV 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + V  +  D    FR  V   F   Y  G TP PCV CNR +KF  +L     LG +
Sbjct: 55  GEYLGVEVHFLDISGDFRQEVYDYFVEEYRTGRTPNPCVVCNRQIKFGRMLEFADSLGIE 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+RS      DG+   +     D  +DQSYFL    ++ +  L FPLG+  KE 
Sbjct: 115 KVATGHYVRS------DGRYIYM---ARDRSKDQSYFLAQVRKEVIPRLLFPLGEWLKEE 165

Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           V+  A E+ +  D+A + +S +ICFV+   Y +V++R    I  EG++++  G+++G H 
Sbjct: 166 VKAYAAEIPVLQDLATQKESSEICFVE-NDYTEVLQRHME-IDREGEVLNEAGEVVGTHK 223

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+RRG  V    +P +V+ +D   +R++VG RE LE     +  IN   D   
Sbjct: 224 GYMHYTIGKRRGFTVRGAHDPHYVLSVDPERNRIVVGTREKLEERSFEISRINLFED--- 280

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
               +  F C VK+R     +P  V  + +   V+  +   G+A GQ  VFY  +    R
Sbjct: 281 ----LTEFDCQVKVRYRTRAIPAHVVIDGERGRVELGEPVYGLARGQFAVFYDGE----R 332

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 333 LLGGGEI 339


>gi|239944472|ref|ZP_04696409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|239990930|ref|ZP_04711594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 11379]
 gi|291447937|ref|ZP_06587327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|291350884|gb|EFE77788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces roseosporus NRRL 15998]
          Length = 378

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/385 (36%), Positives = 194/385 (50%), Gaps = 24/385 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY    L   +DG   R + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHYATVVL--TEDGS--RELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDI+  +G  LG
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGGPA-EGDILDESGTKLG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTSLTAIKPRW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369
            G                ++R+      V  +  D   + V F +   GVA GQA V Y 
Sbjct: 301 CG-----TPPSGPGTYTAQLRAHGGETEVTAELVDGSELNVTFTEPVRGVAPGQAVVLYD 355

Query: 370 SDSNEARVLGGGIISGSKRSDAVEE 394
                 RV+G   I+ + R + V  
Sbjct: 356 G----TRVVGSATIATTVRRERVAA 376


>gi|260171966|ref|ZP_05758378.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
          Length = 350

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 177/366 (48%), Gaps = 33/366 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DS+    +L+  GY+++GVT++++                   DAR +   + + 
Sbjct: 1   MSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARELAVRMGIE 46

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L    +ATGHY
Sbjct: 47  HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWIATGHY 106

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R      ++      +    D ++DQSYFL+   Q+ L    FPLGD  K  VR+   E
Sbjct: 107 SRL-----EEKNGYTYIVAGDDDKKDQSYFLWRLGQEVLKRCIFPLGDYTKVKVREYLAE 161

Query: 207 MGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRHNGIINY 262
            G +    + +S ++CF+ +G Y D ++     +      G  V+  G  LG+H G   Y
Sbjct: 162 KGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVNSEGVKLGQHKGAPYY 220

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GL +A+G+P +V+ ++   + V++G  + L    +   +       + E  +  
Sbjct: 221 TIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAEQ----DKIVDEQELFG 276

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                V+IR    P+P  V+R +DG + V F ++   +A GQ+ VFY       RVLGG 
Sbjct: 277 CENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG----RRVLGGA 332

Query: 382 IISGSK 387
            I+  +
Sbjct: 333 FIASQR 338


>gi|325833497|ref|ZP_08165946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eggerthella sp. HGA1]
 gi|325485421|gb|EGC87890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eggerthella sp. HGA1]
          Length = 352

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 191/364 (52%), Gaps = 23/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ + MSGGVDS+V AALL R GY+V+GVT +  ++    +      A         VC 
Sbjct: 6   RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAADAAA---------VCS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   +    F   V+ PF SSYAAG TP PCV CN   K   L+ V  +LG D +
Sbjct: 57  QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R           R ++ R +D  +DQSY L   +Q+QL  L  PLG M K  VR
Sbjct: 117 ATGHYARIARLSD---SGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEVR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++GL +A+K++SQD CF++ G Y   ++      A  GDIV   G +LG H G+ N
Sbjct: 174 VIAADLGLVVAEKAESQDNCFIE-GDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLAN 231

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQR+G+GVA  EP +VV     +  ++VG  +   +  + + ++NW       +++ 
Sbjct: 232 YTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGDMNWQAF----ESLG 287

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           + +   VK+R    P    ++  DD  V +     +   A GQ  V Y  D+    VLGG
Sbjct: 288 ESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLGG 343

Query: 381 GIIS 384
           G+I 
Sbjct: 344 GMIE 347


>gi|170288218|ref|YP_001738456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga sp. RQ2]
 gi|205828981|sp|B1L8X5|MNMA_THESQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170175721|gb|ACB08773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga sp. RQ2]
          Length = 358

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 185/372 (49%), Gaps = 18/372 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        K   +K  CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+  ++ V   + D  E FR  VI PF      G TP PCV CNR VKF   +      G
Sbjct: 61  RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R           ++++ + +D ++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARVEFSGK---YGKKVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R +A E G+ +A K +SQD+CF+  G   + +K     ++ EG ++   G+++G H 
Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLKDEGITLS-EGKVITEKGEVVGHHR 236

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQR+GL +   GE L+V      S+ V+V   E +    +   +  W  +   
Sbjct: 237 GYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEDVFFSGLIAEDPVWHVE--- 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              V + F+C  ++R   +  P  V+  D+ V V FEK    V  GQ   FY  D+    
Sbjct: 294 ---VPEEFRCVCRVRKKSEEAPAVVRVRDNEVEVRFEKKVFAVTPGQIAAFYDEDT---- 346

Query: 377 VLGGGIISGSKR 388
           +LGG II    R
Sbjct: 347 LLGGAIIKEGIR 358


>gi|152990183|ref|YP_001355905.1| tRNA-specific 2-thiouridylase MnmA [Nitratiruptor sp. SB155-2]
 gi|205816887|sp|A6Q239|MNMA_NITSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151422044|dbj|BAF69548.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Nitratiruptor sp. SB155-2]
          Length = 339

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 206/366 (56%), Gaps = 33/366 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++VVAMSGGVDSS  A LL+  GY+VIGV ++ +   +           +++ + ++V 
Sbjct: 3   KKIVVAMSGGVDSSYTANLLQSRGYEVIGVYMKFHPREE--------YHQKNIANIQKVA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + ++V D  + F+  V  PF  SY AG TP PC  CNR +KF++L+    +LG D 
Sbjct: 55  KHLGIEYHVLDRTKEFQERVYQPFVDSYVAGLTPNPCAMCNRVMKFTELIEFADELGVDN 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY ++      DG+    +    D  +DQSYFLF   ++ L  + FPLGD  KE+V
Sbjct: 115 VATGHYAKT------DGQ---FIYEATDKSKDQSYFLFNLKKEFLPRIIFPLGDWYKENV 165

Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A ++ L   IA++ +S +ICFV+   Y DV+K     + + G++V  +G+++G H G
Sbjct: 166 KKEAMKILLLKSIAEQKESSEICFVE-TNYIDVLKEHTE-VEMPGEVVDTHGKVIGEHKG 223

Query: 259 IINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+R+G  +    +P +V+ +  + +R++VG +E LE  +I LR +N   D    
Sbjct: 224 YMHYTIGKRKGFRLFKAHQPHYVLDIIPHKNRIVVGTKEQLEKRQIVLRGLNMFLDQ--- 280

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
                 F C++KIR     VP  V+ +     V  ++   GVA GQA VFY  +    +V
Sbjct: 281 ----KEFDCYIKIRYRTHKVPCHVKIDGSVASVTLKEPVYGVAKGQAGVFYDEE----KV 332

Query: 378 LGGGII 383
           LGGG I
Sbjct: 333 LGGGWI 338


>gi|123966685|ref|YP_001011766.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9515]
 gi|205816903|sp|A2BXZ8|MNMA_PROM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123201051|gb|ABM72659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 390

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/385 (36%), Positives = 205/385 (53%), Gaps = 32/385 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K+ K   +VV +SGGVDSS+ AALL  DG+ V G+TL L       K +GSCC+ + + 
Sbjct: 18  NKSKKQKHIVVGLSGGVDSSLSAALLMEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-T 133
           DA  +C+ + + H + D    F   VI      Y +G TPLPC  CN+ VKF ++L    
Sbjct: 71  DAAGLCEDLGIQHNILDSRVIFEREVIKKTTEGYESGYTPLPCSMCNKNVKFEEMLKFVI 130

Query: 134 RQLGADVLATGHYIRSRLYVGDDGK-------RRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +Q     +ATGHY R      +          +  ++ R  D  +DQSYFL++ +Q+ L 
Sbjct: 131 KQKEFTYIATGHYARVIKSSCEHINNSENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDI 245
            L  PLGD+KKE  R  A  +GL  A K +SQD+C V+   Y  + K I+  +    G+I
Sbjct: 191 RLILPLGDLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHVKTKNGEI 248

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
            H+NG+ LG HNGI ++TIGQR+GLG+A  EPL+V  LDK  + V V  +  L      +
Sbjct: 249 KHINGKTLGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKNDLLKREAII 308

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGV 359
           +E+NW+      +A +   +   +IR   +PV   +              + FE ++  V
Sbjct: 309 KEVNWVSI----EAPIKEIEVEAQIRYRSEPVKGILVPLKSKDNLTKRFKLIFEDNQSSV 364

Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384
             GQA VFY  +     +LGGG+IS
Sbjct: 365 TPGQAAVFYKGEI----LLGGGLIS 385


>gi|182435820|ref|YP_001823539.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776445|ref|ZP_08235710.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus
           XylebKG-1]
 gi|205828974|sp|B1VZW7|MNMA_STRGG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|178464336|dbj|BAG18856.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656778|gb|EGE41624.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 378

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/384 (36%), Positives = 194/384 (50%), Gaps = 24/384 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76
           + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DA
Sbjct: 7   RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 66  RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY    L   +DG   R + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 126 GFDAVCTGHYATVVL--AEDGS--RELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +     G A EGDI+  +G  LG
Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDILDESGTKLG 240

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
            G                ++R+      V  +  D   + V F +   GVA GQA V Y 
Sbjct: 301 CG-----TPPSGPGTYTAQLRAHGGESEVTAELVDGTELNVTFTEPVRGVAPGQAVVLYD 355

Query: 370 SDSNEARVLGGGIISGSKRSDAVE 393
                 RV+G   I+ + R + V 
Sbjct: 356 G----TRVVGSATIATTVRRERVA 375


>gi|328885206|emb|CCA58445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces venezuelae ATCC 10712]
          Length = 381

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 189/378 (50%), Gaps = 24/378 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76
           K +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DA
Sbjct: 3   KTLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           RR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     L
Sbjct: 62  RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D + TGHY    L    +    R + R  D+ +DQSY L    ++QL    FPLGD  
Sbjct: 122 GFDAVCTGHYATVVL----NEDGSRELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 177

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ +R  A   GL +A K DS DICF+  G     +         EGDIV   G  +G
Sbjct: 178 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDEAGAKVG 235

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W
Sbjct: 236 THEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 295

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            G      A     +   ++R+      V     D  + V F++   GVA GQA V Y  
Sbjct: 296 CG-----TAPEGEGRYTAQLRAHGGETEVTASLADGELTVSFDEPVRGVAPGQAIVLYDG 350

Query: 371 DSNEARVLGGGIISGSKR 388
                RV+G   I+ + R
Sbjct: 351 ----TRVVGSATIATTVR 364


>gi|317490186|ref|ZP_07948674.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA]
 gi|316910680|gb|EFV32301.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA]
          Length = 352

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/364 (36%), Positives = 189/364 (51%), Gaps = 23/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ + MSGGVDS+V AALL R GY+V+GVT +  ++    +      A         VC 
Sbjct: 6   RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAADAAA---------VCS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   +    F   V+ PF SSYAAG TP PCV CN   K   L+ V  +LG D +
Sbjct: 57  QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R           R ++ R +D  +DQSY L   +Q+QL  L  PLG M K  VR
Sbjct: 117 ATGHYARIARLSD---SGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEVR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++GL +A+K++SQD CF++ G Y   ++      A  GDIV   G +LG H G+ N
Sbjct: 174 VIAADLGLVVAEKAESQDNCFIE-GDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLAN 231

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQR+G+GVA  EP +VV     +  ++VG  +   +  + +  +NW        A+ 
Sbjct: 232 YTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNW----QAYPALG 287

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           + +   VK+R    P    ++  DD  V +     +   A GQ  V Y  D+    VLGG
Sbjct: 288 ESYDAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLGG 343

Query: 381 GIIS 384
           G+I 
Sbjct: 344 GMIE 347


>gi|224093431|ref|XP_002187736.1| PREDICTED: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 [Taeniopygia guttata]
          Length = 556

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 165/375 (44%), Gaps = 44/375 (11%)

Query: 43  DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
           +GY V GV ++ ++       +G+C   +D  DA RVC  +++  +   Y + + N V  
Sbjct: 160 EGYQVTGVFMKNWDPLD---EQGACSIDRDCEDAYRVCQKLDIPFHQVSYVKEYWNEVFS 216

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR 161
                Y  G TP P + CN+ +KF+  L      LGAD +ATGHY R+ L   +   ++ 
Sbjct: 217 DLLKEYELGRTPNPDILCNKHIKFNYFLHYAVDNLGADAIATGHYARTSLEDEEVFHQKH 276

Query: 162 ------------------IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
                              + +  DL +DQ++FL   +Q  L    FPLGD+ K  V+ +
Sbjct: 277 TKRPQRLLRIRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVKKI 336

Query: 204 AREMGL-DIADKSD--------SQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           A E  L  +  K +        S  +CF+ +  + + +          G+ V + + +++
Sbjct: 337 AAEHDLHHVLKKKEACSMFLFQSMGVCFIGERNFENFLLEYLE--PQPGNFVSIEDKKVM 394

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           GRH G   +TIGQR  L   + +  FVV  D ++  V V P     +L    +    ++W
Sbjct: 395 GRHKGWFLFTIGQRARL-AGLKDAWFVVDKDVSTGNVFVAPTRDHPALYRDLLRTNRVHW 453

Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           + +    + V +   +C  + R     VP  +  N DG V+V   K    +  GQ  VFY
Sbjct: 454 IAEEPPAELVREKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARAITPGQFAVFY 513

Query: 369 TSDSNEARVLGGGII 383
             D      LG G I
Sbjct: 514 KGD----ECLGSGKI 524



 Score = 79.8 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 43  DG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV 100
            G  Y V GV ++ ++       +G+C   +D  DA RVC  +++  +   Y + + N V
Sbjct: 33  QGHRYQVTGVFMKNWDPLD---EQGACSIDRDCEDAYRVCQKLDIPFHQVSYVKEYWNEV 89

Query: 101 IV 102
             
Sbjct: 90  FR 91


>gi|322802160|gb|EFZ22595.1| hypothetical protein SINV_00348 [Solenopsis invicta]
          Length = 417

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/405 (28%), Positives = 186/405 (45%), Gaps = 46/405 (11%)

Query: 21  MR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           MR VVV +SGGVDS+V A LLK  G++V GV ++ ++ R  +   G C   +D  DAR +
Sbjct: 2   MRNVVVGISGGVDSAVAAFLLKIKGFNVTGVFMKNWDIRDET---GKCMVEKDYDDARWI 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138
           CD + +     ++ + + N V       Y  G TP P + CN+ +KF     + R +  A
Sbjct: 59  CDKLKIPLIQVNFVKEYWNEVFSDIVEKYQNGYTPNPDILCNKNIKFDKFFHLARNRFQA 118

Query: 139 DVLATGHYIRSR----LYVGDDGKRRR----IMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           D +ATGHY ++     L   +  K +      + +  D  +DQ++FL    Q+ L    F
Sbjct: 119 DAIATGHYAKTSFGAYLENYEANKSKYLLNVRLLQAQDSNKDQTFFLSQVPQETLRHCMF 178

Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           PLG   K  V+ +A E GL  IA K +S  ICFV + ++   +    A     GD + L+
Sbjct: 179 PLGTHLKNHVKMMATEAGLCQIARKKESMGICFVGKREFQHFISEYIAD--KPGDYIDLD 236

Query: 250 -GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYL 305
            G ++G+H+GI   TIGQR  +   + +P +V   D+ S+ VIV       +L    +  
Sbjct: 237 SGLLIGKHDGIHKRTIGQRCNISGCL-KPYYVFSKDQESNTVIVVGGTTHPALYSDFLIT 295

Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
           REI+W+ +   E    +G   C  + +     +   V + ++  +++  +     +  GQ
Sbjct: 296 REIHWINEEPRELRRNNGVLNCNFRFQHRNPLIACKVYKMSNGRLFIRLDAPLRAITKGQ 355

Query: 364 -------------------ACVFYTSDSNEARVLGGGIISGSKRS 389
                                V Y+ +      LG   IS +  S
Sbjct: 356 RYDLDLILVTPRKVKLIGSYAVLYSGE----ECLGSSAISYTGPS 396


>gi|170079302|ref|YP_001735940.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. PCC 7002]
 gi|169886971|gb|ACB00685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. PCC 7002]
          Length = 318

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/324 (38%), Positives = 178/324 (54%), Gaps = 17/324 (5%)

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           KG CC+   V DA  +C+ + + H++ D  + F+  ++    S Y  G TPLPC  CNR 
Sbjct: 4   KGQCCSEGMV-DAADICEQLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRM 62

Query: 124 VKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           VKF  +L   + +LG D +ATGHY R R    +D   R  + R +D  +DQSYFL+  TQ
Sbjct: 63  VKFGPMLQWAKAELGIDQIATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDLTQ 119

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIAL 241
           + L    FPLG+M K   R +A EM L  A K +SQD+C ++  G     + +       
Sbjct: 120 EMLAGTLFPLGEMTKGETRQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ--R 177

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           EG+IV L+G++LG H GI +YTIGQR+GLG+A  EPL+VV LD   +RV+V  R+     
Sbjct: 178 EGEIVDLDGKVLGHHTGIHHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRAGQS 237

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVA 360
              ++ +NWL        +    +  V++R     VPV V     D + + FE+ + G+ 
Sbjct: 238 ECTVQRMNWLAL----PGITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQFGIT 293

Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384
            GQA V Y  D    RVLGGGII 
Sbjct: 294 PGQAAVLYDGD----RVLGGGIIE 313


>gi|72161001|ref|YP_288658.1| tRNA-specific 2-thiouridylase MnmA [Thermobifida fusca YX]
 gi|123733604|sp|Q47SD2|MNMA_THEFY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71914733|gb|AAZ54635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermobifida fusca YX]
          Length = 363

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/376 (37%), Positives = 196/376 (52%), Gaps = 23/376 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA     GYDV GV L L +S   S R G   CC  +D  DARR 
Sbjct: 4   RVLAAMSGGVDSAVAAARAVEAGYDVTGVHLAL-SSNPQSYRTGARGCCTIEDSRDARRA 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  Y++D  E F   V+  F + YAAG TP PC+ CN  +KF  +L     LG D
Sbjct: 63  ADVIGIPFYIWDMAEEFDRDVVQDFVAEYAAGRTPNPCLRCNEKIKFQAVLERALALGFD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH++R      ++G+    + R +D  +DQSY L   T++QL    FPLGD  KE 
Sbjct: 123 AVCTGHHVRL-----ENGR----LRRSVDAVKDQSYVLAVLTREQLAHAIFPLGDCTKEE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +ADK DS DICF+  G     ++R     +  G IV   GQ++G H G 
Sbjct: 174 VRAEAARRGLTVADKPDSHDICFIADGDTSGFLERRLG--SNPGPIVDETGQVVGEHRGA 231

Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             +T+GQRRGL +       +V+ ++  S+ V VGPRE+L+V RI      W G    E+
Sbjct: 232 HAFTVGQRRGLNLSGAPHRRYVLSIEPVSNTVRVGPREALQVDRIVGERPVWSGCEPPEE 291

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                    V++R+  +      ++ +  V +  ++  +GVA GQA V Y  D     V+
Sbjct: 292 WTPF----LVQLRAHGEVYSCRARQYEGRVEILLDEPALGVAKGQAAVLYDGDV----VM 343

Query: 379 GGGIISGSKRSDAVEE 394
           G   I+ + R +    
Sbjct: 344 GSSTIAETSRVEQAAA 359


>gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lentisphaera araneosa HTCC2155]
 gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lentisphaera araneosa HTCC2155]
          Length = 353

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 177/371 (47%), Gaps = 24/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ + +SGGVDSSV   LLK +G +++    L+++         G C   +D+   R V
Sbjct: 1   MKIAMLLSGGVDSSVALRLLKEEGGHEITAFYLKIWL-EDELAFLGECPWEEDMQYVRAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ +++   V   ++ + + V+    +    G TP P + CN  +KF        +   D
Sbjct: 60  CEELDIPLQVVPLQKEYMDRVVSYVLAELKQGRTPSPDILCNERIKFGAFFDAIDET-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    V ++ +    + R  D  +DQ+YFL + +Q QL    FP+G + K  
Sbjct: 119 KVATGHYAQ----VQENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGSLMKSR 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR+LA E  L    + DSQ ICF+ +  Y D V+        +GDI+ +   +  G H G
Sbjct: 175 VRELAEEYDLPNKVRKDSQGICFLGKISYPDFVRFHLGE--KQGDIIEIETDEKKGEHKG 232

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGL 315
           +  +TIGQR GLG++ G P +VV  D  ++ V +  +  L       + +  ++W     
Sbjct: 233 VWFHTIGQRSGLGLSGG-PWYVVKKDLATNIVYISHKNGLEDQLRDEVTVNTVHWTSGKF 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            ++         VK+R     V   +    +  V++   + + G+A GQ+C+FY      
Sbjct: 292 PKNT-----NLKVKLRHGPQLVEARIMDLGESRVFIKLAEKDKGIAPGQSCIFYDD---- 342

Query: 375 ARVLGGGIISG 385
              LG G+I  
Sbjct: 343 LICLGRGVIEK 353


>gi|325970705|ref|YP_004246896.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy]
 gi|324025943|gb|ADY12702.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy]
          Length = 356

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 190/375 (50%), Gaps = 29/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---KGSCCAGQDVYDA- 76
           M+V+V MSGG+DSSV A LLK+ G++V+GVT+ ++N R    R     SC A     D  
Sbjct: 1   MKVLVGMSGGIDSSVAAYLLKQQGHEVMGVTMTIWNKRSHLTRPLNSTSCFAPDKTEDII 60

Query: 77  --RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             +++C+ I + H V +  + F   V+  F + Y  G TP PCV CN  +KF  ++   +
Sbjct: 61  AIKKICEKIGIEHQVLELSDLFEEIVLANFKTEYMDGRTPNPCVWCNSKIKFGAMVEYAK 120

Query: 135 QLGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + G D    ATGHY R       +   R  + + +DL++DQSYFL+   QQQL    FPL
Sbjct: 121 ESGLDFDRFATGHYARIV-----EENGRYAVAKAVDLKKDQSYFLYRLNQQQLARTLFPL 175

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G M KE VR +    G     + +SQD      G Y D++       +  G+IV+  G++
Sbjct: 176 GAMTKEEVRRIDVAQGFHKVYQEESQDFY---DGDYTDLLD----ITSRPGNIVNRQGRV 228

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LGRH GI +YTIGQR+GLG+A   PL+V+ L  +++ V+VG  E      +   ++ W  
Sbjct: 229 LGRHEGIWHYTIGQRKGLGIAAERPLYVLALRSDTNEVVVGFVEDTLQSTVTAGDVVWSS 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
               +  V+       KIRS+         +N DG +   F         GQ+ V Y   
Sbjct: 289 VQTLQQEVM----VQAKIRSTGFATEAKAHQNPDGSITAIFSDEVKAATVGQSLVLYDG- 343

Query: 372 SNEARVLGGGIISGS 386
                +L GGII  +
Sbjct: 344 ---PVILCGGIIVQA 355


>gi|29349296|ref|NP_812799.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341204|gb|AAO78993.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 351

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 33/366 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG+DS+    +L+  GY+++GVT++++                   DAR +   + + 
Sbjct: 1   MSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARELAARMGIE 46

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L    +ATGHY
Sbjct: 47  HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIATGHY 106

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R     G        +    D ++DQSYFL+   Q  L    FPLGD  K  VR+   E
Sbjct: 107 SRLEERSG-----HIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKIKVREYLAE 161

Query: 207 MGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRHNGIINY 262
            G +    + +S ++CF+ QG Y D ++     +      G  V+  G  LG+H G   Y
Sbjct: 162 KGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLGQHKGAPYY 220

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GL +A+G+P +V+ ++   + V++G  E L+   +   +       + E  +  
Sbjct: 221 TIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQ----DRIVDEQELFS 276

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                V+IR    P+P  V+R +DG + V F ++   VA GQ+ VFY       RVLGG 
Sbjct: 277 CENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFYDG----RRVLGGA 332

Query: 382 IISGSK 387
            I+  +
Sbjct: 333 FIASQR 338


>gi|318059485|ref|ZP_07978208.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actG]
 gi|318081277|ref|ZP_07988609.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actF]
          Length = 372

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/377 (36%), Positives = 187/377 (49%), Gaps = 24/377 (6%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCD 81
           + AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DARR  D
Sbjct: 2   LAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     LG D +
Sbjct: 61  VIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDAV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
            TGHY R   +        R + R  D+ +DQSY L     +QL    FPLGD    K+ 
Sbjct: 121 CTGHYARVLTHPD----GSRELHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTETTKDE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R  A   GL +A K DS DICF+  G     +         EGDIV  +G  LG H G 
Sbjct: 177 IRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA--EGDIVDESGTRLGTHQGA 234

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +TIGQR+GL +      G+P +V+ +    + V VGPRESL+V  +      W G   
Sbjct: 235 YGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTAVRPRWCG--- 291

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              A +   +   ++R+      V  +   D + V F+    GVA GQA V Y       
Sbjct: 292 --TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAVVLYDG----T 345

Query: 376 RVLGGGIISGSKRSDAV 392
           RV+G   I+ +++ +  
Sbjct: 346 RVVGSATIATTRKPEPA 362


>gi|218779733|ref|YP_002431051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761117|gb|ACL03583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 356

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 19/366 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ +AMSGGVDS + A LLK+   D++G+   +          G     + +    R   
Sbjct: 4   RIAIAMSGGVDSMISAYLLKQTCRDMVGIHF-ITGFENEGAPPGPDGVPEPL---ARASK 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++   V + +E F   V+ PF  +Y  G TP PC+ CNRTVKF  LL   R +  A+ 
Sbjct: 60  ELDLPIEVVNLQEEFHTHVVAPFVDTYLKGRTPNPCMVCNRTVKFGALLDAARNRFNAEK 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R     D   R  + +  DL++DQSYFL   +Q QL    FPLG+  K+ +
Sbjct: 120 IATGHYARVRP----DSAGRFRLVKGADLKKDQSYFLGFLSQAQLGAAVFPLGEFTKDQI 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R+ A E+GLD   K +SQ+ CF+   +Y D ++      +  GD+V++ G+++GRH G+ 
Sbjct: 176 REKAVELGLDKYTKPESQETCFIADDRYRDFLQNQPGFPSRPGDVVNVQGEVIGRHQGVF 235

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +TIGQRRG+ +   E  +V  +D  ++R+ V  +  L    +++  +NW+         
Sbjct: 236 AFTIGQRRGINIPASEAYYVQAIDPAANRITVCFKSGLLSRGVHVGGVNWIV-----PPQ 290

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
            + F+   +IR         ++  +DG V V F++ +  V  GQ  VFY  D     VLG
Sbjct: 291 KNAFEAATRIRYRHKEAASAIEVLEDGTVNVWFDEPQSAVTPGQGAVFYQED----EVLG 346

Query: 380 GGIISG 385
            G I  
Sbjct: 347 AGWIDK 352


>gi|302542324|ref|ZP_07294666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302459942|gb|EFL23035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 372

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 191/388 (49%), Gaps = 28/388 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           D + TGHY      V  D      + R  D+ +DQSY L    ++QL    FPLGD    
Sbjct: 120 DAVCTGHYAT----VVRDDNGVLELHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTT 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K+ +R  A   GL +A K DS DICF+  G     + R       EGDIV   GQ LG H
Sbjct: 176 KDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSRHLGTA--EGDIVDEGGQKLGTH 233

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   +  W G
Sbjct: 234 EGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVSALTAIKPRWCG 293

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFY 368
                 A         ++R+      V  +     +   + V F +   GVA GQA V Y
Sbjct: 294 -----AAPTGPGTYTAQLRAHGGETEVTAEPVGGADGGELRVSFAEPVRGVAPGQAIVLY 348

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396
                  RV+G   I+ ++RS    +  
Sbjct: 349 DG----TRVVGSATIAATERSRPAVQQA 372


>gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
 gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
          Length = 497

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/398 (27%), Positives = 172/398 (43%), Gaps = 23/398 (5%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           + E   L+    DKN  ++R+ + +SGGVDSSV   LL   G+      L+++       
Sbjct: 55  IIEPNYLSCCLPDKN--NLRIALLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFEN 112

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
               C   +D+  A+ VCD +++   V    + +   V+      Y  G TP P V CN 
Sbjct: 113 FWSECPWEEDLKYAKAVCDQVDIPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT 172

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            +KF   +     +  D +A+GHY +      D+  +  ++    D+ +DQ+YFL   +Q
Sbjct: 173 RIKFGAFMDAINNMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQ 232

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            QL  L FPLG + K+ VR LA    L   D+ DSQ ICF+ + K+ + V R      +E
Sbjct: 233 AQLRRLIFPLGGISKDEVRKLATLFNLPNKDRKDSQGICFLGKIKFSEFVARHIGE--ME 290

Query: 243 GDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
           G ++    G  LG H G   YTIGQR+GL +  G P +VV  D  ++ V V         
Sbjct: 291 GIMLEAETGDFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSFDK 349

Query: 302 R---IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV------YVDF 352
           R   + +  + W           +  +   K+R         V      V       V  
Sbjct: 350 RRRLLRVGSLRWFNGS----PPKETSELQCKVRHGPGFYNCSVVIEPGEVDDQDVAIVQL 405

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
            + + G+A+GQ   FY         +G G+I  S    
Sbjct: 406 CEDDQGLAAGQFAAFYKG----RTCIGSGVILESWNDQ 439


>gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
 gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
          Length = 375

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 171/371 (46%), Gaps = 18/371 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGGVDSSV   LL   G+      ++++          SC   +D+  A+ VCD
Sbjct: 2   RVAVLVSGGVDSSVALRLLCAAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVCD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V   +    + + N V+    +   AG TP P + CN  VKF   L    +   D +
Sbjct: 62  EVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDRV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A+GHY R   YV + G  R  +    D  +DQ+YFL   +Q+QL  L FPLG + K  VR
Sbjct: 122 ASGHYARVERYVDEQGTIRARLKLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNGQILGRHNGII 260
            LA  + L   D+ DSQ ICF+ + K+ D + R       EG  I    G+ +G+H G  
Sbjct: 182 QLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGE--KEGLLIEAETGKTMGKHKGFW 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLGDGLFE 317
            YTIGQRRG+ ++ G P +VV  D   + V +         +    Y+  ++W       
Sbjct: 240 FYTIGQRRGISLSHG-PWYVVAKDSEKNLVYISRHYFSGDKKRRNFYVDNLSWFSTIPD- 297

Query: 318 DAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                  KC  K+R           V+R   G  V    ++  +A+GQ   FY  ++   
Sbjct: 298 --PSCPIKC--KVRHGPSFHDCELEVEREKQGARVKLLHNDQALAAGQYAAFYAGET--- 350

Query: 376 RVLGGGIISGS 386
             LG G+I+ S
Sbjct: 351 -CLGSGMITES 360


>gi|261415273|ref|YP_003248956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371729|gb|ACX74474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327007|gb|ADL26208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 355

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 18/368 (4%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV V MSGGVDSSV A LL++ GY+V+GVTL++     ++           V  A+ 
Sbjct: 2   SKTRVAVGMSGGVDSSVAALLLQQQGYEVVGVTLRVLPDVDSAF---DVENDPSVVRAKM 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H+V +  + F   V+    + ++   TP PC  CNR +KF  ++   + LGA
Sbjct: 59  IAEKLGIEHHVANCSDAFTGEVLKRCHADFSHARTPNPCCYCNRFIKFGWMMDYAKSLGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LATGHY+R      ++    R + R  D  +DQSYFLF    ++   +  PLG   K 
Sbjct: 119 EFLATGHYVRI-----EEVNGVRRLLRGRDPGKDQSYFLFWVPDERRNHVLTPLGTYVKS 173

Query: 199 SVRDLAREMGLDIADKSDSQDICF-VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            VR++A + G   A   DSQDICF +   +Y + +K     +   G  V   G++   H+
Sbjct: 174 EVREIAAQNGFVNAKTGDSQDICFDIYGSQYTEFLKDRFGEMTRPGRFVDEKGKVWNTHD 233

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV-GPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQR+GLGVA+G P FV ++D  +  ++V G + S+   R+ +    W G    
Sbjct: 234 GFHKYTVGQRKGLGVAIGVPAFVKHVDPETGDILVTGDKSSVCFDRVEMVNCEWHGGV-- 291

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              V   F+    +R  Q  V   V   D +     F++    V  GQ  VFY  D    
Sbjct: 292 -REVGTTFRAEGMVRYRQRAVGCEVTIVDTNKAVAVFDEPLFAVTPGQCAVFYDGD---- 346

Query: 376 RVLGGGII 383
            VLGGG I
Sbjct: 347 MVLGGGQI 354


>gi|296270802|ref|YP_003653434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobispora bispora DSM 43833]
 gi|296093589|gb|ADG89541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobispora bispora DSM 43833]
          Length = 362

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/374 (36%), Positives = 192/374 (51%), Gaps = 24/374 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDAR 77
           + +RV+ AMSGGVDS+V AA +  +G++V+GV L L  + ++ +     CC  +D  DAR
Sbjct: 5   RKLRVLAAMSGGVDSAVAAARIAEEGHEVVGVHLALSPNPRSHRVGARGCCTLEDARDAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R  D I +  YV+D  ERF   V+  F S YAAG TP PC+ CN  +KFS +L     LG
Sbjct: 65  RAADVIGIPFYVWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFSAVLDRALALG 124

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGH+ R    V         + R +D  +DQSY L   T++QL    FPLG   K
Sbjct: 125 FDAVATGHHARLIDGV---------LRRSVDASKDQSYVLGVLTREQLKHAIFPLGGSTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRH 256
             VR  A   GL +ADK DS DICF+  G     +         EG IV  L G++LG H
Sbjct: 176 AEVRAEAARRGLAVADKPDSHDICFIADGDTRAFLAERLGTA--EGPIVDALTGEVLGTH 233

Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   +TIGQR+GLG+      G P +V+ ++  S+ V VGPR  L+V RI      W  
Sbjct: 234 RGAYGFTIGQRKGLGLERPAPDGRPRYVLSIEPVSNTVKVGPRSRLQVTRIIGERPVW-- 291

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                    +   C V++R+  +         +  +++D +    GVA GQA V Y  D 
Sbjct: 292 -NGPVAEPYEPITCSVQLRAHGEVYGCRAWVEEGRLHIDLDTPAYGVAPGQAAVLYQDD- 349

Query: 373 NEARVLGGGIISGS 386
               V+G   I+ +
Sbjct: 350 ---MVIGSATIASA 360


>gi|145593765|ref|YP_001158062.1| tRNA-specific 2-thiouridylase MnmA [Salinispora tropica CNB-440]
 gi|145303102|gb|ABP53684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinispora tropica CNB-440]
          Length = 394

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/371 (39%), Positives = 202/371 (54%), Gaps = 22/371 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G   CC  +D  DARR 
Sbjct: 39  RVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRA 97

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D +++  YV+D  +RF+  V+  F + YAAG TP PC+ CN  +KF+ +L     LG D
Sbjct: 98  ADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFD 157

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ R    +G DG    ++ R +DL +DQSY L   T++QL    FPLGD  K  
Sbjct: 158 AVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKTQ 209

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR  A   GL +ADK DS DICFV  G     + R        GD+V  + G+++GRH G
Sbjct: 210 VRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTT--PGDVVDGDTGEVVGRHTG 267

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQRRGL +      G P +V+ +   ++ V VGP E+L V ++  R   W+G  
Sbjct: 268 AYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWIGG- 326

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                  D  +C V++R+  D VP  V   DDG+  +  +   GVA+GQA V Y  D   
Sbjct: 327 ---PRPADPVECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPDPAG 383

Query: 375 ARVLGGGIISG 385
             VLG   I+ 
Sbjct: 384 DIVLGSATIAA 394


>gi|161833715|ref|YP_001597911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri GWSS]
 gi|205828995|sp|A8Z5W4|MNMA_SULMW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152206205|gb|ABS30515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri GWSS]
          Length = 380

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/398 (31%), Positives = 200/398 (50%), Gaps = 49/398 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N K  RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN          C   +D  DA
Sbjct: 2   NVKRKRVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNFE--------CPWREDSIDA 53

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V  ++ +  Y+ D  + ++N +I      Y  G TP P + CN  +KF   L  +  L
Sbjct: 54  MLVSQSLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFL 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +D +ATGHY+R +  + ++GK    +   +D  +DQSYFL    + Q+    FPLG + 
Sbjct: 114 KSDFIATGHYVRKK-EINENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLN 172

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------- 249
           K+ VR++A +  L  A+K DSQ ICF+ + K+ + +K+  A    +G I+ +N       
Sbjct: 173 KKEVREIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLAE--KKGIIIEINKNSHIFK 230

Query: 250 -----------------GQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVI 291
                            G+I+G H G   +T GQR+GL +   + PLFV+  D   + + 
Sbjct: 231 YKQKKLFSKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILY 290

Query: 292 VG---PRESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD 346
           VG       L    I ++   I+W    + +  +    +   +IR  Q+     + + ++
Sbjct: 291 VGMGKNHPGLYTKVICIKKYNIHW----INKKKIKTKIEVECRIRYRQNFKKATLYKKNN 346

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +YV+FE  ++ V  GQ  V+Y ++     V+G G+IS
Sbjct: 347 DLYVEFEIPQLAVNGGQFIVWYINN----EVIGSGLIS 380


>gi|313681611|ref|YP_004059349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154471|gb|ADR33149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 339

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 199/367 (54%), Gaps = 33/367 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V++ MSGGVDS+V   LLK  GYDV GV ++L++     +             A+R 
Sbjct: 2   GKKVLIGMSGGVDSTVSTLLLKEQGYDVEGVYMKLHSKPGYHEIHQ--------ARAQRA 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D   V  ++ D +E F   V  PF  +Y  G+TP PC  CNR +KF  +++    +GAD
Sbjct: 54  ADFAGVKLHILDLQEEFNAKVFTPFIETYKEGKTPNPCALCNRNIKFGAMVAYADSIGAD 113

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHYIR       DG+    + +  D  +DQSYFLF      +  L FPLG+  K  
Sbjct: 114 YVATGHYIRH------DGQ---YLLQAHDDTKDQSYFLFYIDPALVPRLLFPLGERHKSD 164

Query: 200 VRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           ++  A  + GL+  A +S+S +ICFV+   Y DV+K     +  EG++++L G+++G+H 
Sbjct: 165 IKAYAAGIEGLESFASQSESSEICFVETT-YMDVLKPYVP-VDQEGEVLNLEGKVVGKHK 222

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+R+G  V    +P FVV +    ++++VG RE LE HR+ L  +N       
Sbjct: 223 GYMHYTIGKRKGFSVHGAHDPHFVVEIKPEINQIVVGTREDLECHRVELERVNMFDSR-- 280

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  F+C VK+R     V   V+ + D   V+  +  +GVASGQA VFY  +    +
Sbjct: 281 -----TEFECDVKLRYRTTAVRCSVKIDGDHATVELHEPVLGVASGQAGVFYDGE----K 331

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 332 LLGGGWI 338


>gi|305682215|ref|ZP_07405019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305658688|gb|EFM48191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 366

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/374 (38%), Positives = 195/374 (52%), Gaps = 19/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA   + G+DV+GV L L    +A +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVKAGHDVVGVHLALSQDPQAVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKTDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG     + R +D  +DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPADGGDG----YLRRGVDPNKDQSYVLGVLGHHEIAHCMFPVGDTIKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A  MG  +A K DS DICF+  G     +          G IV   G  L  H+G
Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGERIGL--RPGMIVDTEGNKLREHDG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYTIGQR+GL +    A G+P +V  ++  +  V VG R  L V  I    + +L   
Sbjct: 235 AWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIEADRLKYLH-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                +   F   V++R+    VP    V R  D + ++ +K+  GVA GQA V Y  D 
Sbjct: 293 ---PMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVARGQAAVLYLPDP 349

Query: 373 NEARVLGGGIISGS 386
               VLG G I G+
Sbjct: 350 GGDIVLGSGTICGT 363


>gi|195996679|ref|XP_002108208.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens]
 gi|190588984|gb|EDV29006.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens]
          Length = 369

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 190/371 (51%), Gaps = 23/371 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VAMSGGVDS++ A LL++ G++V+G+ ++ ++    ++  G C   +D+ D  + C+ 
Sbjct: 8   IAVAMSGGVDSTIAAYLLRKQGHEVVGIFMKNWDI---TEETGICKTDEDMQDFIKSCNH 64

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADVL 141
           + + H   ++ + + + V  PF + Y  G TP P + CNR +KF+ L    +  LG D L
Sbjct: 65  LGIPHKEVNFVQDYWHHVFSPFVNGYKQGITPNPDITCNRMIKFNKLRQYCSENLGVDNL 124

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY +           +  + + +D  +DQ+YFL    +  L ++ FP+G++ K  V+
Sbjct: 125 ATGHYAQLVT------DSKPKLIQAVDEAKDQTYFLANVKKISLKNIMFPIGNLLKSEVK 178

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           +LA ++GL  IA K +S  +CF+ +  +   +         E D+  ++GQ  G+H+ + 
Sbjct: 179 NLALKIGLRKIATKKESMGVCFIGKRNFKTFISEYIEN--QEYDVNTIDGQNFGKHSNLS 236

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD-GLF 316
             TIG+R  +G  M E  +VV  D N   + + P     +L     Y+ + NW+      
Sbjct: 237 LSTIGERARIG-GMSERWYVVSKDSNRKVITLAPGINHPALYCRIFYVADANWISYCAEM 295

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           + ++    +C ++IR     VP  ++   +G + V+ ++S   V  GQ   FY    +  
Sbjct: 296 QLSLRKELECHIRIRHLAPLVPCLIKLQYNGFLEVNSQQSLFAVTPGQFAAFY----SRN 351

Query: 376 RVLGGGIISGS 386
             LGGG I  S
Sbjct: 352 ECLGGGQIVSS 362


>gi|271969310|ref|YP_003343506.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptosporangium roseum DSM 43021]
 gi|270512485|gb|ACZ90763.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptosporangium roseum DSM 43021]
          Length = 356

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 193/371 (52%), Gaps = 25/371 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA +   G+DV GV L L ++   S R G   CC  +D  DARR 
Sbjct: 4   RVLAAMSGGVDSAVAAARIAEAGHDVTGVHLAL-SANPQSYRTGARGCCTIEDSRDARRA 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  Y++D  ERF   V+  F S YAAG TP PC+ CN  +KF  +L     LG D
Sbjct: 63  ADVIGIPFYIWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFEAVLDRALALGFD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGH+ R    V         + R  D  +DQSY L   T++QL    FPLGD  K  
Sbjct: 123 AVATGHHARIADGV---------LSRSPDEGKDQSYVLGVLTREQLKHAIFPLGDSTKAQ 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR+ A   GL +ADK DS DICF+  G     +       A +G IV  +G ++GRH G 
Sbjct: 174 VREEAARRGLMVADKPDSHDICFIADGDTRGFLADRLG--AEQGPIVDESGAVVGRHEGA 231

Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +T+GQR+GL +      G P +V+ ++  S+ V VGPR +LEV  I      W     
Sbjct: 232 YGFTVGQRKGLHIDRPAPDGRPRYVLSIEPVSNTVTVGPRSALEVTGIVATRPVW---NG 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
             D   +   C V++R+  +      Q + D V++  +    GVA+GQA V Y  D+   
Sbjct: 289 PADVPHEPLTCTVQLRAHGEVYGCRAQLSGDEVHIALDTPATGVAAGQAAVLYLGDT--- 345

Query: 376 RVLGGGIISGS 386
            V+G   I+ +
Sbjct: 346 -VIGSATIATA 355


>gi|205822033|sp|A4X484|MNMA_SALTO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 360

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/371 (39%), Positives = 202/371 (54%), Gaps = 22/371 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G   CC  +D  DARR 
Sbjct: 5   RVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRA 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D +++  YV+D  +RF+  V+  F + YAAG TP PC+ CN  +KF+ +L     LG D
Sbjct: 64  ADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ R    +G DG    ++ R +DL +DQSY L   T++QL    FPLGD  K  
Sbjct: 124 AVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKTQ 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           VR  A   GL +ADK DS DICFV  G     + R        GD+V  + G+++GRH G
Sbjct: 176 VRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTT--PGDVVDGDTGEVVGRHTG 233

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQRRGL +      G P +V+ +   ++ V VGP E+L V ++  R   W+G  
Sbjct: 234 AYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWIGG- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                  D  +C V++R+  D VP  V   DDG+  +  +   GVA+GQA V Y  D   
Sbjct: 293 ---PRPADPVECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPDPAG 349

Query: 375 ARVLGGGIISG 385
             VLG   I+ 
Sbjct: 350 DIVLGSATIAA 360


>gi|220913201|ref|YP_002488510.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter chlorophenolicus
           A6]
 gi|219860079|gb|ACL40421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter chlorophenolicus A6]
          Length = 372

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 187/382 (48%), Gaps = 26/382 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R CD + 
Sbjct: 1   MSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + +YV+D+ ERF+  V+  F   YAAG TP PC+ CN  +KF+ LL     LG D + TG
Sbjct: 60  IPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203
           HY +    V +D    R + R  D  +DQSY L   T +QL    FPL D   K  VR  
Sbjct: 120 HYAK----VIEDSHGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAE 175

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A   GL +A+K DS DICF+  G     +          GDIV   G  +G H G   +T
Sbjct: 176 AERRGLSVANKPDSHDICFIPDGDTAGWLAEKIDMST--GDIVDETGAKVGEHPGANAFT 233

Query: 264 IGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           +GQRRGL +      G+P FV+ +    ++V+VGP   L +  I   +++W G  + E  
Sbjct: 234 VGQRRGLKLGRPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIQGIKVSWAGLPIEEVD 293

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQACVFYTSD 371
               F C  ++R+  DPVP   +   D         + V       GVA GQ  V Y   
Sbjct: 294 TGAEFDCHAQVRAHGDPVPAHARMEADPDSADAPARLVVTLTDPLRGVAPGQTVVLYQG- 352

Query: 372 SNEARVLGGGIISGSKRSDAVE 393
              +RVLG   I  ++      
Sbjct: 353 ---SRVLGQATIDAARSLQRAA 371


>gi|158521761|ref|YP_001529631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfococcus oleovorans Hxd3]
 gi|205816872|sp|A9A0S9|MNMA_DESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158510587|gb|ABW67554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfococcus oleovorans Hxd3]
          Length = 358

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 188/380 (49%), Gaps = 28/380 (7%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             LN   L+ +  +  + V +SGG+DS V A LLK+ G DV  +        +   R G 
Sbjct: 5   NPLNPWPLESS--NPLIAVLVSGGIDSLVAAHLLKQSGADVTAIH--FLTGYEPEDRAGR 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                      ++   +++  ++FD    F++ V+  F ++Y  GETP PC+ CN  +KF
Sbjct: 61  L---------EKLFTQMDIPVFIFDCRTVFQSNVVDYFTAAYLRGETPNPCMVCNSRIKF 111

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              +   R LGAD +ATGHY R+      DG R   + +  D  ++QSYFL   +Q QL 
Sbjct: 112 GACMDYARSLGADAVATGHYCRTT--KDPDGVR---LWKGADPAKEQSYFLAFLSQDQLG 166

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             RFPL  M K+ VR  A   GL   +  +SQD+CF++  +  D ++     I   G I 
Sbjct: 167 RARFPLERMTKDQVRAHAARHGLVPIESKESQDVCFIRGEECADFIEAQVPAIPGPGPIE 226

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
            + G+++G H+G+  +T+GQRRG+     +P +V  LD   + + VG R+ L V    + 
Sbjct: 227 DMTGRLIGTHSGLHRFTVGQRRGINCPAEQPYYVAALDMARNCLKVGFRQDLFVPVCRVA 286

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           ++NW+      D         VKIR +Q  VP  +    +    V+F   +  VA GQ  
Sbjct: 287 QVNWI-----PDRPKGSMNVSVKIRYNQTEVPARLTALGETDAVVEFVTPQFAVAPGQGA 341

Query: 366 VFYTSDSNEARVLGGGIISG 385
           VFY  D+    VLGGGII  
Sbjct: 342 VFYDGDA----VLGGGIIRA 357


>gi|215431975|ref|ZP_03429894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis EAS054]
 gi|289755139|ref|ZP_06514517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis EAS054]
 gi|308375963|ref|ZP_07445668.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu007]
 gi|308377199|ref|ZP_07441475.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu008]
 gi|289695726|gb|EFD63155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Mycobacterium tuberculosis EAS054]
 gi|308344583|gb|EFP33434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu007]
 gi|308348530|gb|EFP37381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU
           [Mycobacterium tuberculosis SUMu008]
          Length = 361

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/366 (37%), Positives = 191/366 (52%), Gaps = 22/366 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG D +ATG
Sbjct: 60  IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R              + R +D ++DQSY L   T QQL    FP+GD  K  +R  A
Sbjct: 120 HYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              GL +A+K DS DICF+  G     +          G +V  +G +L  H+G+  +TI
Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDGVHGFTI 228

Query: 265 GQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           GQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +        A 
Sbjct: 229 GQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA----AP 284

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                C V++R+  + V    +   D ++V       GVA GQ  V Y  D     VLG 
Sbjct: 285 SGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVLGS 344

Query: 381 GIISGS 386
             I+G+
Sbjct: 345 ATIAGA 350


>gi|307299195|ref|ZP_07578996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914991|gb|EFN45377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 357

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 26/366 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +M++ +A+SGGVDS+V AA L R G DVIG  + +      +            +     
Sbjct: 6   EMKIGIALSGGVDSAVAAARLIRQGNDVIGYHMIVLEGNPLANAAADDAKAVADH----- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +   + D  E FR  ++  F +SY +GETP PCV CN ++KF  LL      G +
Sbjct: 61  ---LGIELKIVDLREEFR-RILNYFTTSYMSGETPNPCVVCNDSIKFGLLLERMFSFGEE 116

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      +       + R +D  +DQSYFL    + +L D+ FPLG+M KE 
Sbjct: 117 KIATGHYARLVSLDEN-----VFLARALDRAKDQSYFLSRIGKHKLHDILFPLGEMTKEE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A  + L +  K DSQ+ICF+  G Y   +K         G I   +G +LGRH G+
Sbjct: 172 VRQEASGIDLPVHSKKDSQEICFIPDGDYRSFLKS-RGIEGNPGPITDESGILLGRHTGL 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIGQR+G+G +  +  +V  LD  ++++I+  R+SL    +  ++ NW  D      
Sbjct: 231 SGYTIGQRKGIGFSGRDRYYVKRLDLKNNKLILAQRQSLMSEALVAKDPNWYID------ 284

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             + F C  KIRSS  PV   V   + + + VDF++    V  GQ  VFY  D     V+
Sbjct: 285 PGEEFDCLCKIRSSMKPVSAKVTIVSGEKIRVDFQEKVWAVTPGQLAVFYIDD----LVV 340

Query: 379 GGGIIS 384
           G   I 
Sbjct: 341 GSAFIE 346


>gi|293977825|ref|YP_003543255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri DMIN]
 gi|292667756|gb|ADE35391.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri DMIN]
          Length = 380

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 198/394 (50%), Gaps = 47/394 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN          C   +D  DA  V 
Sbjct: 4   KRVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNFDN------KCPWREDSIDAMLVS 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ +  Y+ D  + ++N +I      Y  G TP P + CN  +KF   L  +  L +D 
Sbjct: 58  QSLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFLKSDF 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +  + ++GK    +   +D  +DQSYFL    + Q+    FPLG + K+ V
Sbjct: 118 IATGHYVRKK-EINENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLNKKEV 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249
           R++A +  L  A+K DSQ ICF+ + K+ + +K+  A    +G I+ +N           
Sbjct: 177 REIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLAE--KKGIIIEINKNSHIFKYKQN 234

Query: 250 -------------GQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG-- 293
                        G+I+G H G   +T GQR+GL +   + PLFV+  D   + + VG  
Sbjct: 235 KLFYKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILYVGMG 294

Query: 294 -PRESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV 350
                L    I ++   I+W    + +  +    +   +IR  Q+     + + ++ +YV
Sbjct: 295 KNHPGLYTKVICIKKYNIHW----INKKKIKTKIEVECRIRYRQNFKKATLYKKNNDLYV 350

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +FE  ++ V  GQ  V+Y ++     V+G G+IS
Sbjct: 351 EFEIPQLAVNGGQFIVWYINN----EVIGSGLIS 380


>gi|296140603|ref|YP_003647846.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Tsukamurella paurometabola DSM 20162]
 gi|296028737|gb|ADG79507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Tsukamurella paurometabola DSM 20162]
          Length = 365

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/379 (37%), Positives = 195/379 (51%), Gaps = 24/379 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SEAPGTLRTGSRGCCSKEDAGDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RFR  VI  F ++YAAGETP PC+ CN  +KFS L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFREDVIDDFVAAYAAGETPNPCLRCNEKIKFSALAERAYALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R          +   + R +D ++DQSY L   T +QL    FP+GD  K 
Sbjct: 120 DAVATGHYARL---------QGGELRRAVDPDKDQSYVLAVLTAEQLSRAMFPVGDTPKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            +R+ A   GL +ADK DS DICF+  G     +          G +V    G+ LG H 
Sbjct: 171 LIREEAARRGLAVADKPDSHDICFIPSGDTQAFLGARIG--VRPGAVVDAATGERLGEHG 228

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G P +V  +D  S  V VG  E L+V RI      W   
Sbjct: 229 GVHEFTIGQRKGLGLPGPGPDGAPRYVTAIDAASGEVRVGRGEQLDVTRIVADGAVWTSG 288

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            +         +  V++R+     PV  +   D + +D  +   GVA GQA V Y  D +
Sbjct: 289 SV----PTQPIEAMVQVRAHGGLAPVTARAEGDRIVMDLAEPLRGVAPGQAAVLYAPDQD 344

Query: 374 -EARVLGGGIISGSKRSDA 391
               V+G G I  +  + A
Sbjct: 345 RGDLVVGSGTIRSTAHATA 363


>gi|254459090|ref|ZP_05072513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
 gi|207084361|gb|EDZ61650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
          Length = 343

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 33/371 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K+ +V+V MSGGVDS+V A LLK+DGYDV G+ ++L++                +  A+
Sbjct: 2   KKNKKVLVGMSGGVDSTVSALLLKKDGYDVEGLYMKLHSKP--------GYHEVHLSRAQ 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  D + +  +V D +E F   V  PF  +YA G+TP PC  CNR +KF +++     +G
Sbjct: 54  KAADFVGMKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMVKFADLIG 113

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHYI++      DGK         D  +DQSYFLF   +  L  L FPLG   K
Sbjct: 114 ADYVATGHYIKT------DGKYFYQ---AADDTKDQSYFLFYVQKNVLPKLIFPLGSRHK 164

Query: 198 ESVRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
             +++ A  + GL+  A + +S +ICFV+   Y D++K     +   G+++  +G ++G 
Sbjct: 165 NDIKEFAASIKGLESFASQGESSEICFVETT-YTDLLKDYV-NVDNSGEVLDRDGNVVGE 222

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G ++YTIG+R+G  V    EP +V+ +D  ++++ VG +E L  + + +  +N   D 
Sbjct: 223 HKGYMHYTIGKRKGFTVKGAHEPHYVLSIDAKNNQITVGKKEELACNNVTIEHLNMFNDS 282

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                  D F   VK+R     VP  V+  ++   V  ++S  GVA+GQA VFY  D   
Sbjct: 283 -------DEFDTTVKLRYRTIAVPCHVKIENNKATVTLKESVYGVATGQAAVFYDDD--- 332

Query: 375 ARVLGGGIISG 385
            R++GGG I  
Sbjct: 333 -RLIGGGWICA 342


>gi|299752841|ref|XP_001832878.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprinopsis cinerea okayama7#130]
 gi|298410025|gb|EAU88908.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprinopsis cinerea okayama7#130]
          Length = 369

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 178/376 (47%), Gaps = 25/376 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LL +  YD+  V ++ +++R  S     C   +D  D +RVC  +++ 
Sbjct: 1   MSGGVDSSVAALLLAQQDYDLSAVFMRNWDTRDESGSDRGCEWEKDWEDVQRVCKKLDIP 60

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC------NRTVKFSDLLSVT--RQLG- 137
             + D    + N V  P    +  G TP   V C      NR +KF  LL        G 
Sbjct: 61  CSMIDLSREYWNRVFEPSLQQWELGTTPNADVWCNRKAEDNREIKFGALLERLPPDSSGQ 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
               ATGHY R     G +   R  + RP D  +DQ+Y+L + ++  L    FP+  ++K
Sbjct: 121 RPWFATGHYARKTWSEGPNA--RPKLVRPADGHKDQTYYLSSISESGLQRALFPINHLQK 178

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVK-RINAGIALEGDIVHL-NGQILG 254
             VR+LA++  L  A + DS  ICFV +  K+ + +    N   A +G I+    G++LG
Sbjct: 179 PQVRELAQKHDLHNAQRPDSVGICFVGEKAKFHNFLSCPANYIPAQKGLIIDETTGKVLG 238

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +H G+ NYTIG+   L   M   + V   D +++ +     ESL  + I + E  W+   
Sbjct: 239 KHQGLWNYTIGEGSRL-PGMPTRMAVSRKDPSTNTIY---HESLYTNVINVPEFTWIWSD 294

Query: 315 LFEDAV--VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
                +   +GF+  V  R     VP  V+R +  GV V  +  E  V  GQ  V Y+ D
Sbjct: 295 SVPTELDTPEGFRASVMHRYRMKAVPCTVRRSSGQGVTVQCDDLEQAVTPGQVAVLYSDD 354

Query: 372 SNEARVLGGGIISGSK 387
                 LG G+I+ S+
Sbjct: 355 ----WCLGCGVIASSE 366


>gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
 gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
          Length = 375

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 171/371 (46%), Gaps = 18/371 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGGVDSSV   LL   G+      ++++          SC   +D+  A+ VCD
Sbjct: 2   RVAVLVSGGVDSSVALRLLCGAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVCD 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V   +    + + N V+    +   AG TP P + CN  VKF   L    +   D +
Sbjct: 62  EVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDRV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A+GHY R   YV + G  R  +    D  +DQ+YFL   +Q+QL  L FPLG + K  VR
Sbjct: 122 ASGHYARVERYVDEQGTIRARLMLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNGQILGRHNGII 260
            LA  + L   D+ DSQ ICF+ + K+ D + R       EG  I    G+ +G+H G  
Sbjct: 182 QLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGE--KEGLLIEAETGKTMGKHKGFW 239

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLGDGLFE 317
            YTIGQRRG+ ++ G P +VV  D   + V +         +    Y+  ++W       
Sbjct: 240 FYTIGQRRGISLSHG-PWYVVAKDSEKNLVYISRHYFSGDKKRRNFYVDNLSWFSTIPD- 297

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                  KC  K+R         +  +R   G  V    S+  +A+GQ   FY  ++   
Sbjct: 298 --PSCPIKC--KVRHGPSFHDCELEFEREKQGARVKLLHSDQALAAGQYAAFYAGET--- 350

Query: 376 RVLGGGIISGS 386
             LG G+I+ S
Sbjct: 351 -CLGSGMITES 360


>gi|257054918|ref|YP_003132750.1| tRNA-specific 2-thiouridylase MnmA [Saccharomonospora viridis DSM
           43017]
 gi|256584790|gb|ACU95923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharomonospora viridis DSM 43017]
          Length = 363

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 193/374 (51%), Gaps = 20/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +++  + R GS  CC+ +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCSLEDSNDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F   YAAG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADILGIPFYVWDFAERFTEEVVETFIGEYAAGRTPNPCVTCNEKIKFEALLEKAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R  +  G        + R  D  +DQSY L +   +QL    FPLGD +K 
Sbjct: 120 DAVCTGHYARLSVVDG-----VPELRRSADESKDQSYVLASLKPEQLRHAMFPLGDSRKP 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR  A E GL +A K DS DICF+  G     +++        GD+V    G +LGRH 
Sbjct: 175 EVRAEAAERGLPVARKPDSHDICFIPDGDTKAFLEKRLGQ--RPGDLVDAETGAVLGRHT 232

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLG+      G+P +V+ L+  S  V VG  + L V+RI      W   
Sbjct: 233 GVHGFTIGQRKGLGIDAPAPDGKPRYVLALEPVSGTVKVGSGDKLAVNRIEGERPIW--- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD-S 372
              E  +    +C  ++R+     P   +  DD V V   +   GVA GQ  V Y  D  
Sbjct: 290 -PSERPLAGPTECVAQVRAHGGTAPAVAEVVDDRVVVHLREPLRGVAPGQVVVLYREDAE 348

Query: 373 NEARVLGGGIISGS 386
               VLG   I+ +
Sbjct: 349 AGDVVLGSAKIAAT 362


>gi|19552461|ref|NP_600463.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC
           13032]
 gi|62390127|ref|YP_225529.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC
           13032]
 gi|145295379|ref|YP_001138200.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum R]
 gi|24638303|sp|Q8NR24|MNMA_CORGL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234850|sp|A4QDK1|MNMA_CORGB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21324007|dbj|BAB98633.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325463|emb|CAF19943.1| TRNA-METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032]
 gi|140845299|dbj|BAF54298.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 365

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/375 (36%), Positives = 196/375 (52%), Gaps = 19/375 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V A+     G++V+GV L L    +  +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDNFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG     + R +D  +DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPADGGDG----YLRRGVDPNKDQSYVLGVLGAHEIEHCMFPVGDTIKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   G  +A K DS DICF+  G     + +        G IV   G  L  H G
Sbjct: 177 EIREEASAAGFSVAKKPDSYDICFIPDGNTQAFLGKHIG--MRPGMIVDQEGTQLREHAG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GL +    A G P +V  +D  +  V VG RE+L++  I+   + +L   
Sbjct: 235 VHEFTIGQRKGLDIKAPAADGRPRYVTDIDAKTGTVTVGTRENLKISTIHADRLKFLH-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               A+     C V++R+    V     + R+ D + ++  +   GVA GQA V Y  D+
Sbjct: 293 ---PAMDGQIDCEVQVRAHGGVVSCSATIDRDADFMVLNLNEPLQGVARGQAAVLYLPDA 349

Query: 373 NEARVLGGGIISGSK 387
           +   VLG G I  ++
Sbjct: 350 DGDIVLGSGTICHTE 364


>gi|299117474|emb|CBN73977.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 491

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 182/438 (41%), Gaps = 79/438 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVVV MSGGVDSSVVA LL + GY+V+GV ++ ++ +  +     C A  D+ DARRV
Sbjct: 35  KQRVVVGMSGGVDSSVVAMLLHQQGYEVVGVFMRNWDEQDET-GSDVCAADTDLEDARRV 93

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138
              + +     D+   + N V  P         TP   V CNR +KF         ++ A
Sbjct: 94  GYHLGIPVKTVDFSREYWNEVFEPSLQELDRCRTPNMDVACNRFIKFDAFREHALGRMSA 153

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R+    G D   R ++ +  D  +DQ+YFL     + L  + FPLG + K 
Sbjct: 154 DFVATGHYARTAPGPGGDWS-RPVLRQAEDGNKDQTYFLSGVPSEGLAKVLFPLGGLTKP 212

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLN-GQILGRH 256
            VR LA E GL +A K +S  +CFV + + +   + +        G+ V ++ G+++GRH
Sbjct: 213 EVRRLAEEGGLPVARKRESMGVCFVGKRRSWASFISQYL--TPSPGNFVCVDTGEVVGRH 270

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI--YLREINWL 311
            G+  YT+GQ+  L   M E  +V  LD +S+ V V       SL    +     + +W+
Sbjct: 271 GGVQLYTVGQKSHL-DGMPEKYYVAGLDSDSNSVYVARGADNPSLFARGLSVLASKFSWV 329

Query: 312 GDGLFE----------------------------------------------------DA 319
                                                                     + 
Sbjct: 330 AGCPPPELLSGSGSHPSAPSRREATKAGGGPAGVEAPVPTKERQPAAPGGEPIDAGEMEG 389

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG----------VYVDFEKSEVGVASGQACVFYT 369
                +C  + R  Q  +P  V+    G          V+V F++    +A GQ    Y 
Sbjct: 390 PPPVLRCEYRSRHRQALLPCGVELLGGGGSGASVPRPVVHVRFDEPAKAIAPGQVVALYK 449

Query: 370 SDSNEARVLGGGIISGSK 387
               E   LGGG I  ++
Sbjct: 450 ----EGICLGGGPILRAE 463


>gi|326330731|ref|ZP_08197035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
 gi|325951572|gb|EGD43608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
          Length = 374

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/383 (39%), Positives = 190/383 (49%), Gaps = 28/383 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDAR 77
            MRVV AMSGGVDS+V AA  K  G+DV GV L L +   AS R G   CC  +D  DAR
Sbjct: 2   GMRVVAAMSGGVDSAVAAARAKEAGHDVTGVHLAL-SRNPASYRSGARGCCTIEDANDAR 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R  D I +  YV+D  +RF   V+  F S YA G TP PC+ CN  +KF+ +L     LG
Sbjct: 61  RAADVIGIPFYVWDLSDRFHEDVVEDFMSEYAEGRTPNPCLRCNEKIKFAAVLDRALALG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY   R    +D      + R +D  +DQSY L    Q QL    FPLGD  K
Sbjct: 121 FDAVATGHYATLR----EDADGLVELHRAVDGGKDQSYVLGVLDQDQLRHSLFPLGDTPK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGR 255
             VR+ A   GL +ADK DS DICFV  G     ++      A    G IV   G++LG 
Sbjct: 177 PLVREEAARRGLLVADKPDSHDICFVADGDNAGWLREKLGDRAPNESGPIVDETGEVLGE 236

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   YTIGQR+GL +      G+P FV+ ++  S  V VGPRE L V  +      W 
Sbjct: 237 HQGTYAYTIGQRKGLRLGKPAPDGKPRFVLDIEPVSGTVTVGPREHLAVDGLSGIRPRWA 296

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQAC 365
           G      A     +  V++R+  D     V         D  V ++      G+A GQA 
Sbjct: 297 G-----RAPEGVLEGTVQLRAHGDEHRARVTVVPTGSTTDAEVEIELLDPAYGIAPGQAA 351

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
           V Y       RV+G   IS ++R
Sbjct: 352 VIYDG----TRVVGSATISTTRR 370


>gi|260904921|ref|ZP_05913243.1| tRNA-specific 2-thiouridylase MnmA [Brevibacterium linens BL2]
          Length = 397

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 191/404 (47%), Gaps = 46/404 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++VAMSGGVDSSV AA     G++V+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKILVAMSGGVDSSVAAARAVDAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAHR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +++  YV+D+ ERF+  ++  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VAGMLDIPFYVWDFSERFKEDIVDDFIAEYAAGRTPNPCMRCNERIKFAALLDRALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D +ATGHY      V  D      + R  DL +DQSY L   +  QL    FP+G    K
Sbjct: 120 DAIATGHYA----EVLRDDNGLPELHRGEDLAKDQSYVLGVLSGDQLEHCYFPIGATASK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A E G  +A+K DS DICF+  G     +          G I    G+ LG H+
Sbjct: 176 AEVRAEAAERGFSVANKPDSYDICFIPDGDTKAWLADKIP--MRPGLIKDAEGETLGEHD 233

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G + YTIGQR+GLG+    A G+P FV  LD  S+ V VG R  L V  +      W G 
Sbjct: 234 GAMTYTIGQRKGLGIQKPAADGQPRFVTGLDPASNTVTVGSRSDLAVSHLTGIRTTWAGP 293

Query: 314 GLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRND--------------DGVYV------- 350
              +          C V+IR+  DPVP      D              D V V       
Sbjct: 294 APTDIGSEPATAIDCEVQIRAHSDPVPARAWLGDYISEAPEHEVNPIVDEVEVPAARPAG 353

Query: 351 -----DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389
                D ++   GVA GQ  V Y       RVLG   I  + + 
Sbjct: 354 QLMHIDVDEELSGVAPGQTMVIYRG----TRVLGQATIDVTAKD 393


>gi|189461693|ref|ZP_03010478.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136]
 gi|189431580|gb|EDV00565.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136]
          Length = 353

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 26/372 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++ MSGG DSSV A LL+  GY+V GVT + Y     ++          + DAR 
Sbjct: 3   ENNKVLLGMSGGTDSSVAALLLQDAGYEVTGVTFRFYEKDNNTEY---------LDDARE 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ +++SH  +D    FR  +I  F + Y  G TP+PC  CN  +K+  L  +  + G 
Sbjct: 54  LCERLHISHITYDARNEFRERIISYFINEYMTGRTPVPCTLCNNYLKWPLLKKLADEKGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              ATGHY++ R   G        +    D+++DQS+FL+   Q  L  +  P+G + K 
Sbjct: 114 YHFATGHYVQKRNIDG-----YWHITTGTDVDKDQSFFLWGLPQDILQRMLLPMGKLTKN 168

Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNGQILGRH 256
            VR++A E G L  A K DS  +CF     Y   +K      + + G+    +G  LG+H
Sbjct: 169 KVREIAAERGFLKAAHKRDSLGVCFCPM-DYRSFLKEHVKKELIMPGNFYDESGNCLGKH 227

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLREINWLGDGL 315
            G   YTIGQRRGLG+ + + LFV  +   ++ +I+  +  SL    +YL + +      
Sbjct: 228 EGYPFYTIGQRRGLGIYLNKALFVKQIIPQTNSIILSDQLCSLGQTEMYLTDWHVTNPSA 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             +   +     VKIR  +      V    DG +++   +    +A+GQA  FY  D   
Sbjct: 288 LFETTDE---IIVKIRYRKQANRCTVIPTPDGQLHIKLHEPLTSIAAGQAAAFYRDDV-- 342

Query: 375 ARVLGGGIISGS 386
             VLGGGII  S
Sbjct: 343 --VLGGGIICSS 352


>gi|119717667|ref|YP_924632.1| tRNA-specific 2-thiouridylase MnmA [Nocardioides sp. JS614]
 gi|205816899|sp|A1SMB0|MNMA_NOCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119538328|gb|ABL82945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardioides sp. JS614]
          Length = 366

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/380 (40%), Positives = 198/380 (52%), Gaps = 24/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV G+ L L +    S R G   CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAAEAGHDVTGIHLAL-SRNPQSYRSGARGCCTIEDSNDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I +  YV+D  +RF   V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADVIGIPFYVWDLSDRFHEDVVEDFMAEYAAGRTPNPCLRCNEKIKFAAVLDRALGLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R  L  G DG     M R +D  +DQSY L    Q QL    FPLG   K+
Sbjct: 120 DAVATGHYAR--LVAGADG--LVEMHRAVDHGKDQSYVLGVLDQGQLRHSLFPLGGSTKD 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLN-GQILGR 255
            VR  A E GL +ADK DS DICF+  G     ++      A   EG IV  + G++LGR
Sbjct: 176 EVRREAAERGLLVADKPDSHDICFIADGDNAGWLREKLGDRAPHHEGTIVDDDTGEVLGR 235

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   +TIGQR+GL +      G P FV+ ++  S  V VGP E L VHR+      W 
Sbjct: 236 HEGSYGFTIGQRKGLRIGRPAPDGRPRFVLDIEPVSGTVTVGPHERLAVHRLRGIRPRWC 295

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           G       V D     V++R+  +     + R+ D V ++  +   G+A GQA V Y   
Sbjct: 296 G------TVPDRLSGTVQLRAHGEEHRAVLVRDGDEVDIELLEPAYGIAPGQAAVLYDG- 348

Query: 372 SNEARVLGGGIISGSKRSDA 391
              +RV+G   IS + R  A
Sbjct: 349 ---SRVVGSATISATDRVAA 365


>gi|281355523|ref|ZP_06242017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Victivallis vadensis ATCC BAA-548]
 gi|281318403|gb|EFB02423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Victivallis vadensis ATCC BAA-548]
          Length = 358

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 185/365 (50%), Gaps = 17/365 (4%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGGVDSSV A L ++ G +VIGVTL+L +          C +  D      +C 
Sbjct: 4   KVIVALSGGVDSSVAAVLAQQAGCEVIGVTLRLKHPDPEFSAAQLCASKNDEAAVESICA 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H+  +    F   V+ P A  YA G TP PC +CN  +KF  L+   R +GA  +
Sbjct: 64  KLGIEHHYLELFPEFECKVLRPAAQEYARGRTPNPCCECNYRIKFGKLVEFARSVGAAKV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY +   + G        + R  DL++DQSYFL+   Q  L  +RFP+G M K  VR
Sbjct: 124 LTGHYAKLSEHGG-----VYELRRGDDLKKDQSYFLYRLDQAILSMVRFPVGAMDKGEVR 178

Query: 202 DLAREMGLDIADKSDSQDICF-VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A E GL  +DK DSQD CF V    + + ++R+       G   +  G+I+GRHNG+ 
Sbjct: 179 RIAAEYGLVTSDKPDSQDACFQVPGESFGETLRRLEKLPRRPGLFRY-QGRIVGRHNGVH 237

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES-LEVHRIYLREINWLGDGLFEDA 319
            +TIGQR+GL VA+G P +V  +D  S  + +      L   R  +  ++W        A
Sbjct: 238 EFTIGQRKGLNVALGVPAYVAGIDPESGDIRLETEPERLLASRFTVERVSWQSGR----A 293

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK-SEVGVASGQACVFYTSDSNEARVL 378
                +  V+IR     VP  V+ +  G    F    +  V  GQA VFY  D     +L
Sbjct: 294 PDLSGELEVQIRYRSRAVPCRVEPDGAGGAAVFPAIPQRAVTPGQAAVFYRGD----LLL 349

Query: 379 GGGII 383
           GGG+I
Sbjct: 350 GGGVI 354


>gi|195952741|ref|YP_002121031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|226704772|sp|B4U7E2|MNMA_HYDS0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|195932353|gb|ACG57053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 342

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 204/367 (55%), Gaps = 28/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V MSGGVDSSV A LLK  G+DVIGVTL+ Y        +  CC+ +DV DAR VC
Sbjct: 1   MIIAVGMSGGVDSSVAAYLLKEQGHDVIGVTLRFYKEECKENAR-VCCSPKDVQDARIVC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
           D + + H   D+E  F+  VI  F  SY  G TP PC  CN+ VK + L    +Q    D
Sbjct: 60  DMLGIPHITLDWENLFKERVIDYFIKSYKTGLTPNPCAICNKDVKTAFLGFYLKQTADID 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY      + ++GK    + R  +  +DQSYF+    +Q L  L FP+G M K+ 
Sbjct: 120 FLATGHY-----VIKEEGK----IKRAKE--KDQSYFMALVPKQSLDYLMFPVGYMTKQE 168

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +RD+A+++ L +A+K +SQD+CF++     D + +       +GDIVH+   + LG+H G
Sbjct: 169 IRDIAKKINLPVANKIESQDVCFLKGMDLEDYLSQFIDMT--QGDIVHIATQKTLGKHKG 226

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           I  YTIGQR GLGV+  +PL+VV  D   + + VG +E L    I L++ N       ED
Sbjct: 227 IHRYTIGQRHGLGVSYHKPLYVVEKDIEKNILYVGEKEYLLKDAITLKDYN-----KLED 281

Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
              D    +++IR +  P+P+  ++ N D V +  ++    VA GQ    Y  D     +
Sbjct: 282 FEKDNM--YIQIRYNSKPIPIKHIEENKDNVIIFLKEPATQVAKGQVGAIYFGDI----L 335

Query: 378 LGGGIIS 384
           LGGGIIS
Sbjct: 336 LGGGIIS 342


>gi|71003538|ref|XP_756435.1| hypothetical protein UM00288.1 [Ustilago maydis 521]
 gi|46096040|gb|EAK81273.1| hypothetical protein UM00288.1 [Ustilago maydis 521]
          Length = 484

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/402 (26%), Positives = 173/402 (43%), Gaps = 41/402 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK-------GSCCA 69
             K  RVVVA+SGGVDSSV AALL +  +D+  V ++ +N    S R          C  
Sbjct: 81  PQKGERVVVALSGGVDSSVTAALLAQADFDLEAVFMRNWNELDESGRMQPGSGGASGCTW 140

Query: 70  GQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            +D  D + VC  +  +   + D  + +   V  P    +  G TP P V CN+ +KF  
Sbjct: 141 QRDWQDVQSVCRHLGNIPVKMIDLSKEYWTQVFEPALQDWQQGTTPNPDVSCNKEIKFGA 200

Query: 129 LLSVTRQLGAD-----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           L+    + G        LATGHY         D + R ++ R  D  +DQ+Y+L +  + 
Sbjct: 201 LMDRLIRTGDHGGSKSWLATGHYAHVAWQQQGD-RTRPMLMRAKDRSKDQTYYLSSVGED 259

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG-----------KYFDVV 232
           +L    FPL  + K  VR+LA++  L  A++ +S  ICF+               +   +
Sbjct: 260 KLAHAHFPLAHLLKTQVRELAKKFQLPTAERRESMGICFIGTRGSNGGAVSNTQGFSTFL 319

Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
                  +  GD+V  +G+++ +H G+   T+GQ   +  A  +  +V   D  +++++V
Sbjct: 320 NGYIP--SAPGDMVDESGRVVSKHCGLHTLTVGQGARIRGATSK-YYVAKKDIPNNKIVV 376

Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDG---FKCFVKIRSSQDPVPVFVQR--- 343
                   L   R+Y+R+I W+      +   DG        ++R  Q      V R   
Sbjct: 377 VQGKDHPMLLCTRLYVRDIEWIWREPPPELKYDGVGRVTLLAQVRHRQVESECVVSRFKQ 436

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             +G  V F +  + VA GQ  V           LG  +I  
Sbjct: 437 GKNGYVVQFTEPVLAVAPGQ--VL--GLWRGNWCLGSAVIES 474


>gi|309363500|emb|CAP26308.2| hypothetical protein CBG_06062 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 188/390 (48%), Gaps = 36/390 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL----------------QLYNSRKASKRKG 65
           RVV+ MSGGVDS+V A LLK+ G+DV+G+ +                  ++S++      
Sbjct: 5   RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMVTHSRQRESEKKNISQINWDSQEEG--SS 62

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           +C   +D  DAR VC+ +N+  +  ++ + + N V + F  +Y  G T +P +DCN ++K
Sbjct: 63  TCPRSKDEADARNVCNRLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIK 122

Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATT 181
           F     V ++   AD +ATGHY  +        ++      +    D  +DQ++FL   T
Sbjct: 123 FDAFHKVAQETFDADFIATGHYATTSFGDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVT 182

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGK-YFDVVKRINAGI 239
           Q+QL    FPLG ++K  V+ +A + G   +  K +S  ICF+ + K + D +       
Sbjct: 183 QEQLKRAMFPLGSLQKSEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDFLDEYIE-- 240

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIVG--- 293
              G IV  +G+ +G+H+GI  +TIG+R   + L        FV  +  ++  V+     
Sbjct: 241 PKPGRIVLKDGKQIGKHHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGS 300

Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE 353
               L   R  +   NW+      + +    K   +I+ +  PVP  V++++  + V+ +
Sbjct: 301 HHSDLYATRFLINRPNWIPSSDPLEEIS-PSKILCRIQRTHPPVPCKVEKSEHYLSVEPK 359

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGII 383
                 + GQ CVFY   + E   LGGG I
Sbjct: 360 IPLRATSPGQMCVFY---TTENECLGGGEI 386


>gi|307179503|gb|EFN67817.1| Thioredoxin domain-containing protein 4 [Camponotus floridanus]
          Length = 759

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 42/368 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDS+V A LLK  G++V GV ++ ++ R  +   G+C   +D  DAR +CD 
Sbjct: 5   VAVGISGGVDSAVTALLLKNKGFNVTGVFMKNWDIRDET---GNCTVEKDYEDARWICDK 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +     D+ + + N V       Y  G TP P + CN+ +KF+    V          
Sbjct: 62  LKIPLIQLDFVKEYWNEVFSDLLEKYQTGYTPNPDILCNKNIKFNKFFDVA--------- 112

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                               + +  D  +DQ++FL    QQ L    FPLG+  K  V+ 
Sbjct: 113 -----------------HVHLLQAYDSNKDQTFFLNQIPQQTLRRCMFPLGNYLKNHVKT 155

Query: 203 LAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260
           +A+E  L  IA K +S  ICFV + ++ D +          G+ V L+ G  +G+HNGI 
Sbjct: 156 IAKEASLHKIAQKKESMGICFVGKREFQDFISEYIDD--KPGEYVDLDSGLSIGKHNGIH 213

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFE 317
             TIGQR  +G       +V   D+ ++ +I    G   +L    +  ++++W+ +   E
Sbjct: 214 KLTIGQRCRIGGCEN-AYYVFSKDQKTNTIIAVDSGIHPALYTDFLITQDVHWISEEPHE 272

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C  + +     +   V + +D+ +++        +  GQ  V Y+ +     
Sbjct: 273 LRHSGVLSCDFRFQHRNPLITCNVYKISDNRLFIRLSVPLRAITKGQYAVLYSGE----E 328

Query: 377 VLGGGIIS 384
            LGG IIS
Sbjct: 329 CLGGSIIS 336


>gi|222099125|ref|YP_002533693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga neapolitana DSM 4359]
 gi|254811469|sp|B9KBD1|MNMA_THENN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221571515|gb|ACM22327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga neapolitana DSM 4359]
          Length = 358

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 183/368 (49%), Gaps = 18/368 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77
           M+V VA+SGGVDS+V   LL ++G++V    ++        K   +K  CC+  D  DA 
Sbjct: 1   MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+  ++ V   + D  E FR  VI PF      G TP PCV CNR VKF   +      G
Sbjct: 61  RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D  A+GHY R           ++++ + +D ++DQSYFL      ++  L FP G   K
Sbjct: 121 FDAFASGHYARVEFSGK---YGKKVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E +R +A E G+ +A K +SQD+CF+  G   + +K     ++ EG ++   G+++G H 
Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLKDEGITLS-EGKVITEKGEVVGHHR 236

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G   YT+GQR+GL +   GE L+V      S+ V+V   E +    +   +  W  D   
Sbjct: 237 GYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEGVFFSGLIAVDPVWHVD--- 293

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
              + + F+C  ++R   +  P  V+  +  V V FEK    V  GQ   FY  D+    
Sbjct: 294 ---LPEEFRCVCRVRKKAEEAPAIVRVKNSEVEVRFEKKIFAVTPGQIAAFYDEDT---- 346

Query: 377 VLGGGIIS 384
           +LGG II 
Sbjct: 347 LLGGAIIK 354


>gi|284931128|gb|ADC31066.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. F]
          Length = 657

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/400 (30%), Positives = 195/400 (48%), Gaps = 31/400 (7%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN------ 56
             E  +  +L      +  RVVVA+SGGVDS+V A LL++ GYDV+   +Q ++      
Sbjct: 269 AIENDKKTALSFFHKQEKPRVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFE 328

Query: 57  --SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
             S  A  +   C A QD  DA+++C+ + +  Y F++ E++ N V +     Y  G TP
Sbjct: 329 LLSDHADDQIQGCDAKQDYEDAQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTP 388

Query: 115 LPCVDCNRTVKFSDLLSVTRQ-LGAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
            P V CN+  KF   ++  R+  G +  +A GHY   +L   DD      +    D  +D
Sbjct: 389 NPDVLCNQFGKFGWFINALRKQFGNNIKIAFGHYA--KLITKDDE---VFLVHTKDHNKD 443

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           Q+YFL    ++QL ++ FPL ++ K +VR++A++  L +A+K DS  ICF+ +  +   +
Sbjct: 444 QTYFLTMLKKEQLKNIIFPLSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFL 503

Query: 233 KRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRV 290
                    +G I+ ++  + +G H+G+  YTIGQ RR       E +FV   D N++ +
Sbjct: 504 SNYL--AIKKGPIILIDENKKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCNKDYNNNTL 561

Query: 291 IVGPRES----LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRND 345
            V    S    L      L   NWL D   +   +   K +++ R  Q       V  +D
Sbjct: 562 YVCYESSKDQYLSSVSCELENFNWLTDTKDQ---LLNKKLWIRFRHRQKLQECEIVSYHD 618

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           D V V +   ++GV  GQ  V Y        V+GGG I+ 
Sbjct: 619 DKVIVKY-TKQIGVTPGQYGVIYD---QNLWVVGGGKITK 654


>gi|218961454|ref|YP_001741229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730111|emb|CAO81023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Cloacamonas acidaminovorans]
          Length = 382

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 22/355 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSC---CAGQDV 73
           K   V V +SGG+DS++ A LL+  GY VIG+T+Q Y+      +  K  C      +++
Sbjct: 3   KKTSVAVGISGGIDSAMTAYLLQESGYRVIGITMQTYDENIEMDKTLKSGCFGPAQEENI 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  +   + + HY+   +E FR+ VI  F  +Y  G+TP PC+ CN  +KF+ L    
Sbjct: 63  LSASLLWRKLGIEHYIIPLQEEFRHKVIDYFCETYIKGKTPNPCLVCNAYIKFALLPEKA 122

Query: 134 RQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             LG   D  ATGHY +      ++  +R  + +  D  +DQSYFL   +Q+QL    FP
Sbjct: 123 HSLGLEFDYFATGHYAKIGF---NNTLKRYQIRKAKDANKDQSYFLAFLSQEQLAQTLFP 179

Query: 192 LGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           LGD  K+ ++ +A   G  ++ ++ +SQD  F+Q      + K         G+I+ + G
Sbjct: 180 LGDYTKQEIKKMAIGKGFTELVERKESQD--FLQSSDLEVLFK---PEDFNPGEIIDMQG 234

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +++G+H GIINYTIGQRR LG+  M EP +V+ +D  ++R+++GP+E L   +    ++N
Sbjct: 235 KVIGKHKGIINYTIGQRRNLGISGMPEPYYVLQIDAENNRIVLGPKEYLFKKKCSATDMN 294

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363
           W+     E      F+   KIR    P    V   ND+ + V F++ ++ +  GQ
Sbjct: 295 WVSLPAPEKK----FRAKAKIRQQHSPADCIVTPINDNTIEVVFKEPQLSITPGQ 345


>gi|25027890|ref|NP_737944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
 gi|30173439|sp|Q8FQ01|MNMA_COREF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|23493173|dbj|BAC18144.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
          Length = 365

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/375 (37%), Positives = 196/375 (52%), Gaps = 19/375 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V A+     G++V+GV L L    ++ +     CC+ +D  DARRV
Sbjct: 1   MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D
Sbjct: 61  CDKLGIPFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120

Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            + TGHY R ++   G DG     + R +D+ +DQSY L      ++    FP+GD  K 
Sbjct: 121 AVVTGHYARLTQPADGGDG----YLRRGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   G  +A K DS DICF+  G     + +        G IV   G  L  H G
Sbjct: 177 EIREEAAASGFSVAKKPDSYDICFIPDGNTQAFLGKHIGL--RPGMIVDREGTTLREHAG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GL +    A G P +V  +D  +  V VG RE LEV  I+   + +L   
Sbjct: 235 VHEFTIGQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFLH-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               A+     C V++R+    V     + R  D + +D  +S  GVA GQA V Y  D 
Sbjct: 293 ---PAMDGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLPDP 349

Query: 373 NEARVLGGGIISGSK 387
               VLG G I G++
Sbjct: 350 EGDIVLGSGTICGTE 364


>gi|297559139|ref|YP_003678113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843587|gb|ADH65607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 362

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 27/378 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA +   G+DV GV L L +    S R G   CC  +D +DARR 
Sbjct: 4   RVLAAMSGGVDSAVAAARVAEAGHDVTGVHLAL-SKNPQSYRTGARGCCTVEDSHDARRA 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  YV+D  E F   V+  F + Y AG TP PC+ CN  +KF  +L     LG D
Sbjct: 63  ADVIGIPFYVWDMSEEFDREVVQDFVAEYEAGNTPNPCLRCNEKIKFEAVLDRAVALGFD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGH++R       DG+    + R +D  +DQSY L     +QL    FPLGD  K+ 
Sbjct: 123 AVATGHHVRKV-----DGR----LVRSVDAAKDQSYVLGVLNAEQLERAVFPLGDCTKDE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A   GL +ADK DS DICF+  G     + R        G I   +G ++G HNG 
Sbjct: 174 VRAEAERRGLSVADKPDSHDICFIADGDTAGFLNRRIGE--RPGPIRDEDGTVVGTHNGS 231

Query: 260 INYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             +T+GQR+GLG      P +V+ ++   + V VGPR SL V  I      W G     +
Sbjct: 232 HTFTVGQRKGLGLGGAAHPRYVLSIEPVDNSVTVGPRASLRVDAITGVRPVWSG----SE 287

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDG---VYVDFEKSEVGVASGQACVFYTSDSNE 374
            + +   C V++R+  +  P  V QR  DG   + V   +   GVA+GQA V Y  D+  
Sbjct: 288 PLTEPTDCHVQLRAHGEVYPASVWQREADGGPELVVRLAEPATGVATGQAVVVYQGDT-- 345

Query: 375 ARVLGGGIISGSKRSDAV 392
             VLG   IS + R+ A 
Sbjct: 346 --VLGSATISATSRTGAA 361


>gi|194226979|ref|XP_001488715.2| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 [Equus caballus]
          Length = 527

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 173/401 (43%), Gaps = 46/401 (11%)

Query: 17  NPKDMRVVVAMSGGVD--------SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
            P+   V  A+ GG          SS  A      GY V GV ++ ++S       G C 
Sbjct: 101 PPEPGPVSRALKGGGRGAEVSARPSSPSAR--PSRGYQVTGVFMKNWDSLDEH---GVCT 155

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           A +D  DA RVC  +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS 
Sbjct: 156 ADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSC 215

Query: 129 LLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR------------------IMCRPMDL 169
                   LGAD +ATGHY R+ L   +  +++                    + +  D 
Sbjct: 216 FFRYALDNLGADAVATGHYARTSLEDDEVFQQKHVKRPEGLFRNRFEVRNAVKLLQAADS 275

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKY 228
            +DQ++FL   +Q  L    FPLG + K+ V+ +A E  L  +  K +S  ICFV +  +
Sbjct: 276 FKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNF 335

Query: 229 FDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNS 287
            + + +        G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D   
Sbjct: 336 ENFILQYLQ--PRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDGAK 392

Query: 288 SRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQR 343
             V V P     +L    +    ++W+ +      V D   +C  + R     VP  +  
Sbjct: 393 GDVFVAPQTDHPALYRDLLRTSRVHWIAEEPPATLVRDKMMECHFRFRHQMALVPCVLTL 452

Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           N DG V+V   K    +  GQ  VFY  D      LG G I
Sbjct: 453 NQDGTVWVTAVKPVRALTLGQFAVFYKGD----ECLGSGKI 489


>gi|303232364|ref|ZP_07319057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae PB189-T1-4]
 gi|302481548|gb|EFL44615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae PB189-T1-4]
          Length = 392

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/405 (31%), Positives = 190/405 (46%), Gaps = 40/405 (9%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N       PK   V + MSGGVDS+  AALLK  GY V  V ++ ++         +C 
Sbjct: 1   MNISMPTYAPKGATVYLGMSGGVDSACSAALLKEWGYTVHAVYMRNWSRDLPGF---TCR 57

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              D+ DA RVC T+ ++  V+D E+ +++ V+     +YA G TP P V CN+T+KF  
Sbjct: 58  WADDLADAERVCVTLGLTLDVWDCEQEYKSTVVDYLIDAYARGYTPNPDVMCNQTIKFGT 117

Query: 129 LLSVTRQLGADVLATGHYIR----------------SRLYVGDDGKR-----RRIMCRPM 167
                   GAD +ATGHY +                +     D G          + R  
Sbjct: 118 FAEKAFAHGADFIATGHYAQVDAGALAGATADVADANVASSADSGNADATFPVSPLIRAA 177

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQG 226
           D  +DQ+YFL+     ++    FP+G++  K+ VR+L RE GL +  K DS  ICFV + 
Sbjct: 178 DEHKDQTYFLWRVPAARIAKTIFPIGNIPSKKQVRELCREFGLGVEQKPDSDGICFVGEV 237

Query: 227 KYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
                +  ++      GDIV    G +LG+H+G   YTIGQRRGL +  G   +VV  D 
Sbjct: 238 GIRTFL--LDTLSQKAGDIVEWETGTVLGQHDGAFLYTIGQRRGLNLGGGPARYVVRTDT 295

Query: 286 NSSRVIVGPR---ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
             + V V      E L    + L   +WLG      A   G +  V++R +   VP  V+
Sbjct: 296 ARNIVYVSSNIACEELHCTSLALERTHWLG-----AAPTPGARYCVRLRHTGALVPCCVR 350

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
              +   ++F++  + +A GQ+ V Y       RV GGG I+   
Sbjct: 351 YAGEQPTLEFDEPIMRIAPGQSAVLYDG----RRVCGGGFIAKHY 391


>gi|296272287|ref|YP_003654918.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096462|gb|ADG92412.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 346

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 192/370 (51%), Gaps = 33/370 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGG+DSSV A +L+++GY+V GV L+L+N              +++     V 
Sbjct: 5   KKVMVGMSGGIDSSVTAYMLQKEGYEVEGVYLKLHNRTDG-------YHEKNLEYIEDVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +++ D  ++F   V   F  SY  G TP PCV CN+ +KF  +L   ++ GA  
Sbjct: 58  AFLGIKYHILDLADKFTAEVYDYFVDSYLEGTTPNPCVKCNKQIKFGAMLDFAKEHGASY 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY ++      DG+         D  +DQSYFL    ++ L  + FPL   KKE +
Sbjct: 118 LATGHYAKT------DGEFFYE---ADDKTKDQSYFLSQVPKEALPFMMFPLSTYKKEDI 168

Query: 201 RDLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
                E+      I +K++SQ+ICFV+   Y DVVKR +A I + G+++   G ++G H 
Sbjct: 169 VKFGAELDSAYKRITEKNESQEICFVETV-YTDVVKR-HANIDVPGNVLDEKGNVIGEHK 226

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G  +YTIG+RRG  V    EP FV  L+   + ++VG +E+LEV+ +    +N   D   
Sbjct: 227 GYAHYTIGKRRGFSVNGAHEPHFVTKLNPKDNTIVVGKKEALEVNNVIADNLNMFVDE-- 284

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                    C VK+R      P  ++  D+ V +  ++   GVA+GQ  VFY +     +
Sbjct: 285 -----KELTCTVKLRYRTTSTPCEIKIEDNKVNISLKEPVFGVATGQLAVFYDN----QK 335

Query: 377 VLGGGIISGS 386
           V+G   I  +
Sbjct: 336 VIGSAWIKET 345


>gi|297202529|ref|ZP_06919926.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083]
 gi|297148131|gb|EFH28850.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083]
          Length = 374

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 188/382 (49%), Gaps = 24/382 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
           D   + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 3   DTTQRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  +RFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 62  SRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY +            R + R  D+ +DQSY L    ++QL    FPL
Sbjct: 122 ALALGFDAVCTGHYAKVVTLAD----GSRELHRASDMAKDQSYVLGVLDERQLAHALFPL 177

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  +G
Sbjct: 178 GDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDESG 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP  +L+V  +   
Sbjct: 236 AKVGTHEGAYGFTIGQRKGLRIGTPAADGKPRYVLDISPVNNTVTVGPAAALDVTALSAI 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           +  W G      A         ++R+      V  +  D  + V F +   GVA GQA V
Sbjct: 296 KPRWCG-----AAPTGPGTYTAQLRAHGGETEVTAELVDGELRVSFTEPVRGVAPGQAIV 350

Query: 367 FYTSDSNEARVLGGGIISGSKR 388
            Y       RV+G   I+ + R
Sbjct: 351 LYDD----TRVVGSATIATTVR 368


>gi|291414311|ref|XP_002723404.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase-like [Oryctolagus cuniculus]
          Length = 490

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 162/367 (44%), Gaps = 36/367 (9%)

Query: 43  DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
           +GY V GV ++ ++        G C A +D  DA RVC  +++  +   Y + + N V  
Sbjct: 100 EGYQVTGVFMKNWDQLDEH---GVCTADRDCEDAYRVCQILDIPFHQVSYMKEYWNDVFS 156

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR 161
            F + Y  G TP P + CNR +KF   L      LGAD +ATGHY R+ L   +  +++ 
Sbjct: 157 DFLNEYEKGRTPNPDIVCNRHIKFGCFLRYAVDNLGADAVATGHYARTSLEDEEVFQQKY 216

Query: 162 I------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           I                  + +  D  +DQ++FL   +Q  L    FPLG + K  V+ +
Sbjct: 217 IKRPEGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQPALRRTIFPLGGLTKPFVKKI 276

Query: 204 AREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261
           A E  L  +  K +S  ICFV +  +   + +        G  + + + Q+LG H G   
Sbjct: 277 AAENRLHHVLQKKESMGICFVGKRNFEHFILQYLQ--PRPGKFISIEDNQVLGTHKGWFL 334

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
           YT+GQR  +   + EP FVV  D     V V P     +L    +    ++W+ +     
Sbjct: 335 YTLGQRAKIS-GLREPWFVVDKDGAKGDVFVAPRTDHPALYRDLLRTNRVHWIAEEPPAA 393

Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            V D   +C  + R     VP  +  N DG V+V   K+   +  GQ  VFY  D     
Sbjct: 394 LVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALTPGQFAVFYKGD----E 449

Query: 377 VLGGGII 383
            LG G I
Sbjct: 450 CLGSGKI 456


>gi|325675868|ref|ZP_08155552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus equi ATCC 33707]
 gi|325553839|gb|EGD23517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus equi ATCC 33707]
          Length = 372

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 200/383 (52%), Gaps = 33/383 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L ++   + R GS  CC+ +D  DA+R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ +RF+  VI  F  SYAAGETP PC+ CN  +KF+ L      LG 
Sbjct: 60  AADVLGIPFYVWDFADRFKEDVIDDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R      +DG+    + R +D ++DQSY L   T  QL    FP+GD  KE
Sbjct: 120 DAVATGHYARL-----EDGE----LRRAVDADKDQSYVLAVLTADQLSRAMFPVGDTPKE 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257
            +R+ A   GL +A+K DS DICF+  G     +          G +V  + G++L +H 
Sbjct: 171 QIREEAAARGLAVANKPDSHDICFIPSGDTRAFLGARIG--IRPGAVVDADTGEVLAQHE 228

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +TIGQR+GLGV    A G+P +V  ++  +  V VG    L+V  I      W   
Sbjct: 229 GVHGFTIGQRKGLGVQGPAADGQPRYVTAIEPETGTVRVGSAARLDVWTITAERAIWTSG 288

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN----------DDGVYVDFEKSEVGVASGQ 363
              E  +    +C V++R+         +            D G+ V   +   GVA GQ
Sbjct: 289 QAPEGPI----ECIVQVRAHGGTARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAKGQ 344

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           A V Y  D +   V+G G I+G+
Sbjct: 345 AVVLYRPDEDGDVVIGSGTIAGT 367


>gi|307326495|ref|ZP_07605690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306887903|gb|EFN18894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 383

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 193/388 (49%), Gaps = 25/388 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
            ++ + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 11  PRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 70  SRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDK 129

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY      + +     R + R  D+ +DQSY L    ++QL    FPL
Sbjct: 130 ALALGFDAVCTGHYAT----IVERADGSRELHRASDMAKDQSYVLGVLDERQLAHAMFPL 185

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K  +R  A   GL +A K DS DICF+  G     +         EGDIV  +G
Sbjct: 186 GDTLTTKGEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGHLGTA--EGDIVDEDG 243

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           + LG H G   +TIGQRRGL +      G+P +V+ +    + V VGP E+L+V  +   
Sbjct: 244 RKLGTHEGAYGFTIGQRRGLRIGHPAPDGKPRYVLDISPVDNTVTVGPVEALDVAALTAI 303

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365
           +  W G        V       ++R+      V  +     G+ V F +   GVA GQA 
Sbjct: 304 KPRWCG-----APPVGPGSYTAQLRAHGGETEVTAEPIGVSGLRVTFAEPVRGVAPGQAI 358

Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVE 393
           V Y       RV+G   I+ ++R+  V 
Sbjct: 359 VLYDD----TRVVGSATIATTERAQVVA 382


>gi|222823281|ref|YP_002574854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter lari RM2100]
 gi|254811447|sp|B9KEW8|MNMA_CAMLR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222538502|gb|ACM63603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter lari RM2100]
          Length = 338

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 34/367 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK+ G+++IG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKQAGHEIIGCYMKLHGKPN--------YHEENIQKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF ++Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLGIKYHILDLQEDFKNQVYMPFINTYKDGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      ++G    ++    D  +DQSYFL    ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARI-----ENG----LIKTAFDDSKDQSYFLANADKEALEYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G +   +G+ +G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGIVRDSSGKEVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ +D   + +IVG +E L+++   L +IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKIDPKKNEIIVGKKEELKINEFDLEKINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V  NDD    V  ++   G+ASGQ  VFY  D     
Sbjct: 279 ----KELDCEVKIRYRSRSTPCKVMINDDKSAKVILKEPVYGLASGQMAVFYDKD----L 330

Query: 377 VLGGGII 383
           VL  G I
Sbjct: 331 VLASGFI 337


>gi|198274479|ref|ZP_03207011.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135]
 gi|198272681|gb|EDY96950.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135]
          Length = 349

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 183/371 (49%), Gaps = 27/371 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            ++ +V++ MSGG DSSV A LL+  GY+V G+T + Y               + + DAR
Sbjct: 2   KENNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKD---------GNIEYLDDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C T+ + H ++D  E F+  +I  F   Y AG TP+PC  CN  +K+  L  V  + G
Sbjct: 53  DLCRTLGIPHLIYDAREMFQEKIIRYFIQEYMAGRTPVPCTLCNNYLKWPLLQQVADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LATGHY+  +   G        +    D ++DQS+FL+   Q  L  +  P+G + K
Sbjct: 113 IYHLATGHYVNKQKIDG-----YWYITCGNDADKDQSFFLWGLPQSILERMCLPMGGLTK 167

Query: 198 ESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQILGR 255
             VR++A   G L  A K DS  +CF     Y   +K     G    G+     GQ +G+
Sbjct: 168 TRVREIAAARGFLKAAKKRDSLGVCFCPM-DYRTFLKTHVPEGEISPGNFYDEQGQKIGK 226

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314
           H G   YTIGQRRGLG+ + + LFV  +    ++VI+    ++LE + +YL   N +   
Sbjct: 227 HEGYPFYTIGQRRGLGIHLNKALFVKEIIPQENKVIISDSLQALEKNEMYLTHWNLIN-- 284

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373
              D V+      VKIR  +      V   DD  +++   +    +ASGQA  FY  ++ 
Sbjct: 285 --PDVVLGHEDVIVKIRYRKQANRCTVTLLDDQRLHIQLHEPLASIASGQAAAFYRDNT- 341

Query: 374 EARVLGGGIIS 384
              VLGGGII 
Sbjct: 342 ---VLGGGIIE 349


>gi|257792258|ref|YP_003182864.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Eggerthella lenta DSM 2243]
 gi|257476155|gb|ACV56475.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Eggerthella lenta DSM 2243]
          Length = 352

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 189/364 (51%), Gaps = 23/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ + MSGGVDS+V AALL R GY+V+GVT +  ++    +      A         VC 
Sbjct: 6   RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAADAAA---------VCS 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H        F   V+ PF SSYAAG TP PCV CN   K   L+ V  +LG D +
Sbjct: 57  QLGIRHEAPGCVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVAGELGCDRI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R           R ++ R +D  +DQSY L   +Q+QL  L  PLG M K  VR
Sbjct: 117 ATGHYARIARLSD---SGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEVR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +A ++GL +A+K++SQD CF++ G Y   ++      A  GDIV   G +LG H G+ N
Sbjct: 174 VIAADLGLVVAEKAESQDNCFIE-GDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLAN 231

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQR+G+GVA  EP +VV     +  ++VG  +   +  + +  +NW       +++ 
Sbjct: 232 YTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNWQAF----ESLG 287

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
           + +   VK+R    P    ++  DD  V +     +   A GQ  V Y  D+    VLGG
Sbjct: 288 ESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLGG 343

Query: 381 GIIS 384
           G+I 
Sbjct: 344 GMIE 347


>gi|194476611|ref|YP_002048790.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Paulinella chromatophora]
 gi|171191618|gb|ACB42580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Paulinella chromatophora]
          Length = 434

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 192/375 (51%), Gaps = 33/375 (8%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L   P   ++ V +SGGVDSS+ AALL + G+ V G+TL L +       KG+CC+ + +
Sbjct: 38  LKNAPNKQKIAVGLSGGVDSSLAAALLVKAGWQVEGLTLWLMS------GKGTCCS-EGL 90

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA  +C+ +N+ H++ D  E F+  ++      Y +G TPLPC  CNR VKF  +L   
Sbjct: 91  LDAVGICEQLNIPHHIVDSREHFQKQIVAFLLRGYESGVTPLPCSRCNREVKFPLMLGWA 150

Query: 134 -RQLGADVLATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQL 185
            R+ G   +ATGHY R      +         K R  + R +D ++DQSYFL+  +Q+ L
Sbjct: 151 ERERGIRKIATGHYARIVDKEDELNLDIPGLSKGRYKLLRGVDYQKDQSYFLYDLSQEIL 210

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGD 244
             L FPLG++ K   R  A+   L+ A+K +SQD+C     G     +       +  G+
Sbjct: 211 SSLIFPLGELTKVETRLEAKRYNLNTANKPESQDLCLADHHGSMKAFLNSYLP--SRTGE 268

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           IV  +G ILG H+GI ++T+GQR+GL +A  EPL+VV +D + ++VIVG R  +      
Sbjct: 269 IVLSDGTILGHHDGIEHFTVGQRKGLKIAWKEPLYVVKIDASRNQVIVGSRNDVAYKSCL 328

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND----D-------GVYVDFE 353
           +  INW+     + A+       V++R    P    +        D          + F 
Sbjct: 329 VGAINWVSIAPPKKAI----DVEVQVRYRSKPEFARLIPLPFTITDQNAERPYRCRLIFH 384

Query: 354 KSEVGVASGQACVFY 368
            ++  +  GQA VFY
Sbjct: 385 HNQFSITPGQAAVFY 399


>gi|315635921|ref|ZP_07891183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315479900|gb|EFU70571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 345

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 200/374 (53%), Gaps = 35/374 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N              +++     
Sbjct: 2   SKKKVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDG-------YHEKNLGYIED 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +N+ +++ D  + F   V   F  SY +G TP PCV CN+ +KF  +L   ++ GA
Sbjct: 55  VAKFLNIKYHILDLADEFSKEVYDYFVDSYLSGTTPNPCVKCNKQIKFGAMLDFAKKHGA 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LATGHY ++      DGK         D  +DQSYFL    ++ L  + FPL   KKE
Sbjct: 115 DFLATGHYAKT------DGKFFYE---ADDKTKDQSYFLSQVDKEALKYMMFPLSSYKKE 165

Query: 199 SVRDLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            +     ++ +    I +KS+SQ+ICFV+   Y DVVKR +A I  EGD++  NG+++G+
Sbjct: 166 DIVKFGAKLDVAYKKITEKSESQEICFVETV-YTDVVKR-HANIDQEGDVLDENGKVVGK 223

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGD 313
           H G  +YTIG+RRG  V    EP FV  L+   + ++VG +E+LEV+ +    +N ++ D
Sbjct: 224 HKGFAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVIGNNLNMFIDD 283

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                     F C VK+R      P  VQ  D+   +  ++   GVA+GQ  VFY +   
Sbjct: 284 T--------KFSCNVKLRYRSVSTPCEVQIKDEKACITLKEPVFGVANGQLAVFYDN--- 332

Query: 374 EARVLGGGIISGSK 387
             +V+G   I  +K
Sbjct: 333 -QKVIGSAWIESTK 345


>gi|226305865|ref|YP_002765825.1| tRNA uridine-sulfurtransferase [Rhodococcus erythropolis PR4]
 gi|229493398|ref|ZP_04387187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus erythropolis SK121]
 gi|259495836|sp|C0ZXK1|MNMA_RHOE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226184982|dbj|BAH33086.1| probable tRNA uridine-sulfurtransferase [Rhodococcus erythropolis
           PR4]
 gi|229319714|gb|EEN85546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus erythropolis SK121]
          Length = 370

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/379 (37%), Positives = 203/379 (53%), Gaps = 27/379 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +  A +     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSTAPGALRTGSRGCCSKEDAGDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF+  VI  F +SYAAGETP PC+ CN  +KF+ L      LG D
Sbjct: 61  ADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFTALADRAVALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R      +DG    ++ R +D ++DQSY L   T  QL    FP+GD  KE 
Sbjct: 121 AVATGHYARL-----EDG----VLRRAVDADKDQSYVLGVLTADQLSRAMFPIGDTPKEQ 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
           +R+ A E GL +A+K DS DICF+  G     +          G +V  + G++L  H+G
Sbjct: 172 IREEAAERGLAVANKPDSHDICFIPTGDTRAFLGARIG--VRPGSVVDADSGEVLAAHDG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLGV      G P +V  ++  +  V VG  ++L+V  I  +   W    
Sbjct: 230 VHGFTIGQRKGLGVEGPAGDGRPRYVTAIEPETGTVRVGSAKNLDVWAISAQRAIWTSGQ 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYT 369
             E  V    +C V++R+         +  DD     G+ +   +   GVA GQA V Y 
Sbjct: 290 APEGPV----ECMVQVRAHGGLAQAVAEAVDDGTSGGGISISLREPLTGVAKGQAVVLYR 345

Query: 370 SDSN-EARVLGGGIISGSK 387
            DS    +VLG G ISG++
Sbjct: 346 PDSELGDQVLGSGTISGTE 364


>gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa]
 gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 174/380 (45%), Gaps = 21/380 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    K +R+ V +SGGVDSSV   LL   G+      L+++     +     C   +D+
Sbjct: 1   MADKDKPLRIAVLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFNNFWSECPWEEDL 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A+ VCD + V   V    + + + V+      Y  G TP P V CN  +KF   +   
Sbjct: 61  KFAKGVCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             +  D +A+GHY      V D   +  ++    D  +DQ+YFL   TQ QL  L FPLG
Sbjct: 121 NNMEFDYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLIFPLG 180

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252
            + KE VR+LA +  L   D+ DSQ ICF+ + K+ + V R       EG I+    G  
Sbjct: 181 CIPKEEVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRHIGES--EGVILEAETGDF 238

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLREIN 309
           LG H G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  + 
Sbjct: 239 LGIHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGSLK 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQD--PVPVFVQRNDDG----VYVDFEKSEVGVASGQ 363
           WL     +  +    +C  K+R         V ++  +D     V V   + + G+A+GQ
Sbjct: 298 WLSGSPTD--MTTQLQC--KVRHGPTFYDCSVKIELGEDSPEEVVAVHLCEDDQGLAAGQ 353

Query: 364 ACVFYTSDSNEARVLGGGII 383
              FY         +G G+I
Sbjct: 354 FTAFYQG----RTCIGSGVI 369


>gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptobacterium curtum DSM 15641]
 gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptobacterium curtum DSM 15641]
          Length = 394

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 170/364 (46%), Gaps = 24/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V +SGGVDSSV AALL   G+DV G  ++ +       R   C    D+ DA+RV  
Sbjct: 50  RVLVGLSGGVDSSVCAALLVETGWDVCGAYMKNWTMDVPGMR---CPWADDLADAKRVAV 106

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +   V+D++E ++  V+      Y AG TP P V CN+ VKF       +  G D +
Sbjct: 107 RLGIDFRVYDFQEAYKREVVDYLVDEYRAGRTPNPDVMCNQQVKFGLFFDAAQDDGFDYI 166

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R+             + R  D  +DQ+YFL+  +   +    FPLG + K  VR
Sbjct: 167 ATGHYARASHDP-------VRLLRAADTHKDQTYFLYRMSSDAVAHTIFPLGGLLKTQVR 219

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260
             A +  L  A K+DSQ ICFV +    D +          G I+  + G+ +G H+G I
Sbjct: 220 AAAEQRNLSTAHKADSQGICFVGEAGICDFLSLYVH--PQPGPIIDDDTGETVGYHDGAI 277

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREINWLGDGLFED 318
            +TIGQR GLG+  G    VV  D + + + V  GP   ++   + L  + W+ D   ++
Sbjct: 278 FFTIGQRHGLGIGGGRRYRVVRKDMDHNILYVHDGPLAPVQDSLLELDRVRWIADVPPQE 337

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                  C V+    +  +   +        V  E     VASGQ+ V Y         L
Sbjct: 338 GA-----CEVRTHHGEKLLAATLLATATTATVQLEADHDAVASGQSVVIYRG----QECL 388

Query: 379 GGGI 382
           GGGI
Sbjct: 389 GGGI 392


>gi|283955448|ref|ZP_06372946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793075|gb|EFC31846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 338

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G+++IG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEIIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTALDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++   G+++G+H G
Sbjct: 164 KKFASTIEILKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDNTGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFSLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+ +DD    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIHDDKSAKITLKDPVYGLASGQMAVFYDDD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|326443600|ref|ZP_08218334.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces clavuligerus ATCC
           27064]
          Length = 367

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 184/370 (49%), Gaps = 24/370 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D  DARR  D I 
Sbjct: 1   MSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAADVIG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL     LG D + TG
Sbjct: 60  IPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDAVCTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVRD 202
           HY              R + R  D+ +DQSY L    ++QL    FPLGD    K+ +R 
Sbjct: 120 HYATVVTLPD----GGRELHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTTKDEIRA 175

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
            A   GL +A K DS DICF+  G     +         EGDIV  +G  LG H G   +
Sbjct: 176 EAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDESGTRLGTHEGAYGF 233

Query: 263 TIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           TIGQR+GL +      G+P +V+ +    +RV VGP E+L+V  +      W G      
Sbjct: 234 TIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRPRWCG-----T 288

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           A         ++R+     PV  +   DG+ V+F +   GVA GQA V Y       RV+
Sbjct: 289 APAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIVLYDG----TRVV 344

Query: 379 GGGIISGSKR 388
           G   I+ ++R
Sbjct: 345 GSATIASTRR 354


>gi|281348930|gb|EFB24514.1| hypothetical protein PANDA_011920 [Ailuropoda melanoleuca]
          Length = 392

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 165/366 (45%), Gaps = 36/366 (9%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103
           GY V GV ++ ++S       G C A +D  DA RVC  +++  +   Y + + N V   
Sbjct: 1   GYQVTGVFMKNWDSLDEH---GVCIADRDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSD 57

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRI 162
           F S Y  G TP P + CN+ +KFS         LGAD +ATGHY R+ L   +  +++ I
Sbjct: 58  FLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAVATGHYARTSLEDEEVFQQKHI 117

Query: 163 ------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
                             + +  D  +DQ++FL   +Q  L    FPLG + K+ V+ +A
Sbjct: 118 RRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIA 177

Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINY 262
            E  L  +  K +S  ICF+ +  + + + +        G  + + + ++LG H G   Y
Sbjct: 178 AENRLHHVLQKKESMGICFIGKRNFENFILQYLQ--PRPGKFISIEDSKVLGTHKGWFLY 235

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319
           T+GQR  +   + EP +VV  D     V V P     +L    +    ++W+ +      
Sbjct: 236 TLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAAL 294

Query: 320 VVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           V D   +C  + R     VP  +  N DG V+V   K+   +A GQ  VFY  D      
Sbjct: 295 VRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALAPGQFAVFYKGD----EC 350

Query: 378 LGGGII 383
           LG G I
Sbjct: 351 LGSGKI 356


>gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 497

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 165/378 (43%), Gaps = 17/378 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L      K +RV V +SGGVDSSV   LL   G+      L+++           C    
Sbjct: 73  LSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWED 132

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+  A+ VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   + 
Sbjct: 133 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 192

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               +  D + +GHY R      D      ++    D+ +DQ+YFL   +Q QL  L FP
Sbjct: 193 AISDMEYDYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFP 252

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG +KK+ VR LA +  L   D+ DSQ ICF+ + K+ D V R      +EG I+   +G
Sbjct: 253 LGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGE--MEGIILEAESG 310

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLRE 307
             LG H G   YTIGQR+GL +  G P +VV  D  ++ V V               +  
Sbjct: 311 DFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 369

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365
           + W          V   +C  K+R          +   DG    V  ++ + G+A+GQ  
Sbjct: 370 LRWNSGKP--SGKVRELRC--KVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFA 425

Query: 366 VFYTSDSNEARVLGGGII 383
            FY         +G G+I
Sbjct: 426 AFYEG----TTCIGSGVI 439


>gi|317477931|ref|ZP_07937114.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|316905845|gb|EFV27616.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 363

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 176/370 (47%), Gaps = 26/370 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             D RV++ MSGG DSSV A  L+  GY+V GVT + Y +   +           + DAR
Sbjct: 15  KSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEAGDETGY---------LEDAR 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR+ +I  F   Y  G TP+PC  CN  +K++ L  +  + G
Sbjct: 66  ALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKG 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L  G     +  +    D ++DQ++FL+   Q  L  +  P+GD+ K
Sbjct: 126 IYWISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITK 180

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
              R  A E G   +A K DS  +CF     Y   +KR      L G    V   G  LG
Sbjct: 181 NEARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YT+GQRRGLG+ + + +FV      S+ V++ P  SL    ++L + N + + 
Sbjct: 240 WHEGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYRQEMWLGDWNLVENS 299

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                V+   +  VKIR  +      V    +G + V   +    +A GQA  FY  D  
Sbjct: 300 ----RVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD-- 353

Query: 374 EARVLGGGII 383
              +LGGGII
Sbjct: 354 -GYLLGGGII 362


>gi|307128600|ref|YP_003880630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri CARI]
 gi|306483062|gb|ADM89932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri CARI]
          Length = 387

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/403 (30%), Positives = 203/403 (50%), Gaps = 56/403 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LLK+ GYDVIG+ L+ YN          C   +D  DA  V 
Sbjct: 2   KRVIVGMSGGVDSSVAALLLKKKGYDVIGIYLKYYNINN------KCPWREDSIDAMLVS 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ +  Y+ D  + ++  +I      Y  G TP P + CN  +KF   L  +R   +D+
Sbjct: 56  QSLKIPFYIIDITKNYKKLIINYIYKEYKKGFTPNPDILCNSKIKFKIFLEKSRFFKSDL 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R +  +  +GK    +   +D  +DQSYFL    Q Q+ +  FPLG++ K+ V
Sbjct: 116 IATGHYVR-KEKIKKNGKIYYKIISGIDDNKDQSYFLCNLNQDQIQNSIFPLGNLNKKKV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249
           R++A +  L  A K DSQ ICF+ + K+ + +K+    +  +GDI+ +N           
Sbjct: 175 REIANKYNLINAKKKDSQGICFIGKIKFLNFLKK--KLVEKKGDIIEINKNNHIYKYDKY 232

Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKN 286
                                 G+I+G+H G+  +T GQR+GL +   + PLF++  D  
Sbjct: 233 KFSSKKEFLFFLSKKIKYKKEYGKIIGKHIGVHYFTKGQRKGLKIGGYKYPLFIIEKDII 292

Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341
           ++ + VG       L    I +  + I+W+ +   +  +    +   +IR  Q+     +
Sbjct: 293 NNILYVGMGKNHPGLYTKVICIKKKNIHWMNENFIKKKI----EVECRIRYRQNFQKATL 348

Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             N + +YV+FE  ++ V +GQ  V+Y ++     ++G G+IS
Sbjct: 349 FINKNSLYVEFEIPQLAVNAGQFIVWYINN----EIIGSGLIS 387


>gi|29829295|ref|NP_823929.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces avermitilis
           MA-4680]
 gi|81719846|sp|Q82JK2|MNMA_STRAW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29606402|dbj|BAC70464.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 376

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 138/376 (36%), Positives = 189/376 (50%), Gaps = 24/376 (6%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70
           +  + P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  
Sbjct: 3   ETPQRPRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL
Sbjct: 62  EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALL 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                LG D + TGHY +    V +DG   R + R  D+ +DQSY L     +QL    F
Sbjct: 122 DKALALGFDAVCTGHYAQV--IVREDGT--RELHRASDMAKDQSYVLGVLDDRQLAHALF 177

Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           PLGD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  
Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGKA--EGDIVDE 235

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +G ++G H G   +TIGQR+GL +      G+P +V+ +    + V VGP  +L+V  + 
Sbjct: 236 SGSVVGSHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPAAALDVTALT 295

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364
             +  W G      A         ++R+      V  +  D  + V F +   GVA GQA
Sbjct: 296 AIKPRWCG-----AAPTGPGTYTAQLRAHGGETQVTAELVDGELQVTFAEPVRGVAPGQA 350

Query: 365 CVFYTSDSNEARVLGG 380
            V Y       RV+G 
Sbjct: 351 VVLYDG----TRVVGS 362


>gi|19114314|ref|NP_593402.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Schizosaccharomyces pombe 972h-]
 gi|3122971|sp|O13947|MTU1_SCHPO RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|2388924|emb|CAB11659.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Schizosaccharomyces pombe]
          Length = 415

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/407 (30%), Positives = 191/407 (46%), Gaps = 33/407 (8%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           S+A + +S  L       +V VAMSGGVDSS  A LLK  GY+V GV ++ +    +   
Sbjct: 15  SKAFQPHSTRLQWPKSQDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDS--A 72

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
              C A +D    ++VC  +N+S   F++E+ + N V  P    Y  G TP P V CNR 
Sbjct: 73  PSGCPAERDWATVQKVCKKLNISCRRFNFEKEYWNLVFEPSLDLYENGLTPNPDVSCNRQ 132

Query: 124 VKFSDLLSVTRQL------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           VKF  L    ++       G   LA+GHY +S + +  +      MC P D  +DQ+ FL
Sbjct: 133 VKFGALFDALKKHCENNVKGDWWLASGHYAKSVVNIETNE---SHMCIPTDKRKDQTLFL 189

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQ---GKYFDVVK 233
               ++ L    FPL +  KE+V+  A   G  +IA+K +SQ +CFV      K+   ++
Sbjct: 190 CTIRKEALEKTIFPLHNWTKENVKKQASSAGFKEIAEKQESQGLCFVSPNVGRKFRKFLQ 249

Query: 234 RINAGIALEGDIV---HLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVVYLDK 285
           R          ++   ++ G+  G H GI + T+G+R GL +   +       +V   D 
Sbjct: 250 RYLNFSDRPIKVIAGKNVVGEFSGNH-GIWSLTVGERCGLSLPQAQSEYFGRWYVWKKDI 308

Query: 286 NSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342
            ++ + +      E L    IYL++  W G  L ++       CFV++R  Q   P  V 
Sbjct: 309 KNNALYICRGTNNELLMSKCIYLKDWKWCGTKL-QNLEKSALSCFVRVRHQQPLQPAKVT 367

Query: 343 -RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            RN + V + F+  +  V  GQ    Y +D      LGGG++   + 
Sbjct: 368 WRNPESVKIHFQDKQRAVTPGQVIAVYVNDV----CLGGGMVDTVEP 410


>gi|302325766|gb|ADL24967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 390

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 198/378 (52%), Gaps = 29/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS----RKASKRKGSCCAGQD-- 72
           +  RV V +SGGVDS++ A LLK+ GY+V+G+T+  ++          R+G     +D  
Sbjct: 27  QKKRVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKN 86

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +A+ V + + + HYV    E ++  V+  F + Y AG TP PCV CN+++KF  L   
Sbjct: 87  IEEAKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHA 146

Query: 133 TRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            R+LG   D  ATGHY R      D       +   +D  +DQ+YFL   + +QL  + F
Sbjct: 147 ARKLGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIF 202

Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           PLG M+K  V+ LA+E+G  D A K +SQD  F++ G Y  +    +    + GD + +N
Sbjct: 203 PLGGMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESD---NVPGDFIDVN 257

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G++LG+H GI++YTIGQR+GL +    EPL+VV +D + ++VI+GPR +L    +   ++
Sbjct: 258 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 317

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQAC 365
           N +   + E + +        IR         +   D     + V F++ +   A GQ  
Sbjct: 318 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 374

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y        V+   II
Sbjct: 375 VLYAD----KGVVASAII 388


>gi|225621511|ref|YP_002722770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira hyodysenteriae WA1]
 gi|225216332|gb|ACN85066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira hyodysenteriae WA1]
          Length = 352

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 27/368 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78
           ++ V MS GVDS+  A LLK  G DV GVT+ L+N  + +   GSC +      V +  +
Sbjct: 3   KIAVGMSAGVDSTTTAKLLKEQGNDVFGVTMLLWNGDERAPLSGSCYSPYQKNIVEECEK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
               I + +Y FD  E F+  VI     SY  G TP PC+ CN  +KF  L     + G 
Sbjct: 63  YAKAIGIDYYAFDISEMFQKKVIDYVTESYKKGFTPNPCIMCNSQIKFMALFEAIEKQGL 122

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D  ATGHY   +    D+  +R ++ R  +L +DQSYFL+  TQ QL  + FP+ +  
Sbjct: 123 EFDKFATGHYAGVKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIMFPMHENT 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
           KE  R++ARE  LD+A+KS+SQD    +  + FD           EG I++++  +ILG 
Sbjct: 180 KEDTRNIAREYNLDVAEKSESQDFFAGEYHRLFD--------EDKEGSIINIDTNEILGH 231

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI +YT+GQR+GLG+A  EPLF+V LD  ++ V VG +    V+ + + ++NW+    
Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFIVALDSETNTVYVGNKNHTFVNEVKIYDVNWIA--- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             +     F+  VK RS+        +  +++ + + F +    +A GQ+CV Y +D   
Sbjct: 289 --EPKQKEFEALVKTRSAHKGTMAAVIPIDENTINIKFHEPTGIIAKGQSCVCYDNDIT- 345

Query: 375 ARVLGGGI 382
              L GGI
Sbjct: 346 ---LCGGI 350


>gi|291004692|ref|ZP_06562665.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 356

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 186/368 (50%), Gaps = 19/368 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA     G++V+GV L L +++  + R G   CC  +D +DARR  D + 
Sbjct: 1   MSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ ERF   VI  F   YAAG TP PC+ CN  +KF  LL     LG D + TG
Sbjct: 60  IPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R  +  G       ++ R  D  +DQSY L + T +QL    FPLGD  K  VR  A
Sbjct: 120 HYARLTVEDG-----VPVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEA 174

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263
            E GL +A K DS DICF+  G     ++         G +V    G +LG H G+  +T
Sbjct: 175 AERGLAVAKKPDSHDICFIPDGDTKKFLESKLGQ--KPGQLVDAETGAVLGEHTGVHGFT 232

Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           +GQR+GLG+      G P +V+ L+  S  V VG  + L V  I  +   W      +  
Sbjct: 233 VGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIW----PSQRE 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           +    +C V++R+         +  D G+ +   +   GVA GQA V Y  +     VLG
Sbjct: 289 LDGPTECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVLG 348

Query: 380 GGIISGSK 387
             +I+ ++
Sbjct: 349 SALIAATR 356


>gi|157363709|ref|YP_001470476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga lettingae TMO]
 gi|205828979|sp|A8F5H8|MNMA_THELT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157314313|gb|ABV33412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga lettingae TMO]
          Length = 349

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 191/368 (51%), Gaps = 24/368 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDAR 77
           M++ + +SGGVDS+V    LK +GY+++   ++         R+     CC+  D  DA+
Sbjct: 1   MKIGILLSGGVDSAVALYQLKNEGYEIVAYHMKTMKDEFFLNRQVKHKICCSPSDTVDAK 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +  T  V   V +  E F+  +I  +   Y  G TP PC  CNR +KF  L+ +  + G
Sbjct: 61  LIAKTAGVPLKVVNLHEIFKEKIITYYLQEYTRGRTPNPCYFCNRFIKFGYLMDLMIEDG 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            DV+++GHY R       DGK    + + +D E+DQSYFL +  +++L  + FP GD  K
Sbjct: 121 VDVISSGHYARVV-----DGK----LLKALDKEKDQSYFLASIEKERLKKIVFPNGDKTK 171

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + +RD+A++ G+ +  K++SQD+CF+  G      +     I   G I    G+ +G H 
Sbjct: 172 DEIRDIAKKAGIHVHSKAESQDLCFIPDGDQKRFFEEQGIKI-KSGPIFDKYGKKIGEHT 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+INYTIGQR+ +GV+ GE ++V  +  + + +IVG  + ++  +  + + N L D    
Sbjct: 231 GLINYTIGQRK-IGVSAGERVYVTRICADRNALIVGNEKDVQSDKFSVIDFNLLVD---- 285

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
             +   F+  VK+R +   VP  V   +  V V        VA GQA VFY  D     V
Sbjct: 286 --IDKNFEATVKVRKNSTEVPCKVSLENHRVIVKTTMPVFAVAPGQAAVFYRGDI----V 339

Query: 378 LGGGIISG 385
           +G GII  
Sbjct: 340 IGAGIIEK 347


>gi|153807264|ref|ZP_01959932.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185]
 gi|149130384|gb|EDM21594.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185]
          Length = 365

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 177/385 (45%), Gaps = 39/385 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARS 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAEHLGIRHITYDAREVFNKQIIEYFVQEYMAGRTPVPCTLCNNYLKWPLLAELADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R              +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 115 FYIATGHYVRKVKLEDT-----YYITSAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAG--------------IALEG 243
             R LA E G   +A K DS  +CF     Y   +K                   I   G
Sbjct: 170 EARALAAERGFRKVATKKDSLGVCFCPM-DYRSFLKNWLDKNDQLFTAHGQKWSEIVRRG 228

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
             V   G  +  H G   YTIGQRRGLG+ +  P+FV  +    + +++ P +SLE   +
Sbjct: 229 RFVDETGHFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKDIFPEKNEIVLAPLQSLEKTEM 288

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362
           +L   N +     E+ V+      VKIR  +      V    +  +++   +    +A G
Sbjct: 289 WLDNWNLIN----ENRVLGCSDIIVKIRYRKQENHGTVTVTPEHLLHIQLHEPLTAIAPG 344

Query: 363 QACVFYTSDSNEARVLGGGIISGSK 387
           QA  FY  D     +LGGGII  ++
Sbjct: 345 QAAAFYKDD----LLLGGGIIVKAR 365


>gi|296393981|ref|YP_003658865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Segniliparus rotundus DSM 44985]
 gi|296181128|gb|ADG98034.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Segniliparus rotundus DSM 44985]
          Length = 375

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 140/374 (37%), Positives = 188/374 (50%), Gaps = 24/374 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA     G+DV GV L L  +   ++     CC+ +D  DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALSRNPDNTRGGSRGCCSVEDSRDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ E F   VI  F ++YA G TP PCV CN  +KF+ LL     LG D
Sbjct: 61  ADMLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       DG     + R +D ++DQSY L   T QQL    FP+GD  K  
Sbjct: 121 KVATGHYARL------DGT---TLRRAVDADKDQSYVLAVLTAQQLSRAMFPVGDTPKPR 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV----KRINAGIALEGDIVH-LNGQILG 254
           +R+ A   GL +A K DS DICF+  G     +       +   A  G+      G +LG
Sbjct: 172 IREEAERRGLAVAHKPDSHDICFIPSGDTKAFLGARIAVRSGAAARPGEFRDHRTGAVLG 231

Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H+G I +T+GQRRGL +      G P +V  ++  +  V VG  E L V  I +R   W
Sbjct: 232 HHDGAIGFTVGQRRGLRLGNPTGDGVPRYVTAVEPETGVVRVGTMEDLRVFSISVRTAVW 291

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            G           F C V+IR+     P  V+    G  V+ ++    VASGQ  V Y  
Sbjct: 292 SGGAAP----AAAFPCVVQIRAHGGFAPARVRAAGAGFEVELDEPLEAVASGQTVVLYDP 347

Query: 371 D-SNEARVLGGGII 383
           D     RV+G G+I
Sbjct: 348 DPVLGDRVIGSGVI 361


>gi|302336036|ref|YP_003801243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Olsenella uli DSM 7084]
 gi|301319876|gb|ADK68363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Olsenella uli DSM 7084]
          Length = 380

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 175/386 (45%), Gaps = 36/386 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV + MSGGVDS++ AALL   G+DV  V ++ ++      R   C    D+ DA RV  
Sbjct: 4   RVCLGMSGGVDSALAAALLVEQGHDVKAVYMRNWSRDLPGFR---CTWADDLADAERVAV 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ +   V+D E  ++  V+     +YA G TP P V CN+TVKF          GAD +
Sbjct: 61  TLGLDLEVWDCERTYKETVVDYLVDAYAHGYTPNPDVMCNQTVKFGAFAERAFAEGADFV 120

Query: 142 ATGHYIRSRLYVGDDGKRRRI----------------MCRPMDLERDQSYFLFATTQQQL 185
           ATGHY R  +    +                      + R  D  +DQ+YFL+      L
Sbjct: 121 ATGHYARVGVAPPMETAPSASAPAPSASAPAPSRRATLFRAADEHKDQTYFLWRVPTGTL 180

Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
               FP+GD+  K  VR +    GL +  K DS  ICF+ +      +  ++      GD
Sbjct: 181 ARTLFPVGDIPSKGEVRRMCAARGLGVERKPDSDGICFIGEVGIRSFL--LDVLDRRPGD 238

Query: 245 IVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEV 300
           IV    G +LGRH+G   +T+GQR+GL +  G   +VV  D  S+ V V       +L  
Sbjct: 239 IVEWETGTVLGRHDGAFLFTVGQRKGLDLGGGPARYVVTTDTESNVVYVTADRSCPALWC 298

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGV 359
            R+ L ++ W+      +         V+ R + +  P  V  + DG V VD  K    V
Sbjct: 299 RRLELSDVLWIAGVPPAEG-----DYVVRTRHTGELRPAHVMPHADGTVSVDLAKPMRAV 353

Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385
           A GQ+ V Y         LGGGII  
Sbjct: 354 APGQSAVIYDG----LVCLGGGIIQK 375


>gi|159036753|ref|YP_001536006.1| tRNA-specific 2-thiouridylase MnmA [Salinispora arenicola CNS-205]
 gi|205816910|sp|A8M5E1|MNMA_SALAI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157915588|gb|ABV97015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinispora arenicola CNS-205]
          Length = 360

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 147/371 (39%), Positives = 197/371 (53%), Gaps = 22/371 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79
           RV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G   CC  +D  DARR 
Sbjct: 5   RVLAAMSGGVDSAVAAARAVAAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRA 63

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I +  YV+D  ERF+  V+  F + YAAG TP PC+ CN  +KF+ +L     LG D
Sbjct: 64  ADVIGIPFYVWDMAERFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ R    +G DG    ++ R +DL +DQSY L   T++QL    FPLGD  K  
Sbjct: 124 AVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLGRSMFPLGDSTKTQ 175

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR  A   GL +ADK DS DICFV  G     +       A  GD+V    G ++GRH G
Sbjct: 176 VRAEATGRGLTVADKPDSHDICFVADGDTRGFLAERLG--ATPGDVVDSSTGAVVGRHTG 233

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQRRGL +      G P +V+ +   ++ V VGP E+L V ++  +   W G  
Sbjct: 234 AYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVRAQRPVWTGG- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                  D  +C V++R+  D VP  V    DG+  +  +   GVA+GQA V Y  D   
Sbjct: 293 ---PRPADPIECEVQLRAHGDVVPATVAVTGDGLRAELHRPVRGVAAGQAIVAYRPDPGG 349

Query: 375 ARVLGGGIISG 385
             VLG   I+ 
Sbjct: 350 DVVLGSATIAA 360


>gi|315638313|ref|ZP_07893494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481660|gb|EFU72283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 338

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 201/368 (54%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK+ G++VIG  ++L+          S    +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKQAGHEVIGCYMKLHGK--------SGYHEENIAKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +++ D +E F+  V +PF ++Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      ++G     +   +D  +DQSYFL    ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL-----ENG----CIKVAVDESKDQSYFLANANKEALQYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y DV+++      ++G+++  +G+++G HNG
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVENT-YVDVLEQFM-DTKIKGEVLDSSGKVVGEHNG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   ++++VG +E L+     L  IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKENQIVVGTKEELKTKEFKLENINLFIDK--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 F C VKIR     VP  V  +++    +  ++   G+ASGQ  VFY  D    R
Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNAQISLKEPVYGLASGQMAVFYEED----R 330

Query: 377 VLGGGIIS 384
           V+  G IS
Sbjct: 331 VIASGFIS 338


>gi|302865761|ref|YP_003834398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|315502317|ref|YP_004081204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora sp. L5]
 gi|302568620|gb|ADL44822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora aurantiaca ATCC 27029]
 gi|315408936|gb|ADU07053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micromonospora sp. L5]
          Length = 358

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 197/373 (52%), Gaps = 22/373 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  + + + R G   CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  +RF + V+  F + YAAG TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADVLGIPFYVWDMADRFHDDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    +G DG    ++ R +D  +DQSY L   T+ QL    FPLGD  K 
Sbjct: 120 DAVVTGHHAR----LGADG----LLRRSVDAAKDQSYVLAVLTRAQLDRSIFPLGDSTKA 171

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR  A   GL +ADK DS DICF+  G     +          G +V  L G ++G H+
Sbjct: 172 EVRAEAARRGLAVADKPDSHDICFIADGDTRGFLAERLGEA--PGQVVDALTGAVVGSHS 229

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQRRGL +      G P +V+ +   ++ V VGP E+LEV  +      W G 
Sbjct: 230 GAYQYTVGQRRGLHLDRPAPDGRPRYVLSITPTTNTVTVGPAEALEVSDVRATRPVWTGG 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +  V    +C V++R+  D VP  V+ + DG+     +   GVA+GQA V Y  D  
Sbjct: 290 PRPDGPV----ECEVQLRAHGDVVPAAVEVDADGLRASLRRPVRGVAAGQAIVAYRPDPA 345

Query: 374 EARVLGGGIISGS 386
              VLG   I+ +
Sbjct: 346 GDVVLGSATITAA 358


>gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 169/382 (44%), Gaps = 21/382 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L        +++ V +SGGVDSSV   LL   G+      L+++           C    
Sbjct: 79  LSCSLPNNRLKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWED 138

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+  A+ VCD ++V   V    + +   V+      Y  G TP P V CN  +KF   + 
Sbjct: 139 DLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 198

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                  D +A+GHY        D   +  ++    D+ +DQ+YFL   +Q QL  L FP
Sbjct: 199 AISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFP 258

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K+ VR LA ++ L   D+ DSQ ICF+ + K+ + V R       EG I+    G
Sbjct: 259 LGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGE--KEGIILEAETG 316

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLRE 307
            +LG+H G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  
Sbjct: 317 DLLGKHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 375

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDG----VYVDFEKSEVGVAS 361
           + W+      +      +   K+R           ++  +DG      V   + + G+A+
Sbjct: 376 LKWIS----REPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAA 431

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ   FY         +G G+I
Sbjct: 432 GQFTAFYQG----RSCIGSGVI 449


>gi|225435460|ref|XP_002282827.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 540

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 169/382 (44%), Gaps = 21/382 (5%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L        +++ V +SGGVDSSV   LL   G+      L+++           C    
Sbjct: 75  LSCSLPNNRLKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWED 134

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+  A+ VCD ++V   V    + +   V+      Y  G TP P V CN  +KF   + 
Sbjct: 135 DLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 194

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                  D +A+GHY        D   +  ++    D+ +DQ+YFL   +Q QL  L FP
Sbjct: 195 AISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFP 254

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG + K+ VR LA ++ L   D+ DSQ ICF+ + K+ + V R       EG I+    G
Sbjct: 255 LGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGE--KEGIILEAETG 312

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLRE 307
            +LG+H G   YTIGQR+GL +  G P +VV  D  ++ V V     SL+  R    +  
Sbjct: 313 DLLGKHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 371

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDG----VYVDFEKSEVGVAS 361
           + W+      +      +   K+R           ++  +DG      V   + + G+A+
Sbjct: 372 LKWIS----REPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAA 427

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ   FY         +G G+I
Sbjct: 428 GQFTAFYQG----RSCIGSGVI 445


>gi|241767515|ref|ZP_04765194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax delafieldii 2AN]
 gi|241361655|gb|EER58004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax delafieldii 2AN]
          Length = 310

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 153/315 (48%), Gaps = 32/315 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P   RVVV +SGGVDS+V A LLK+ G++V+G+ ++ +     S+    C +  D  DA
Sbjct: 3   APTKQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I +     ++   +++ V   F   Y AG TP P V CN  +KF   L    +L
Sbjct: 60  AAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+ +ATGHY R R            + + +D  +DQSYFL    Q QL    FP+G++ 
Sbjct: 120 GAEKIATGHYARVRQNAA---TGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELH 176

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K  VR +A E+GL  A K DS  ICF+ +  + + + R  +     G +    G+ LGRH
Sbjct: 177 KAEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYISHA--PGPMQDDRGRTLGRH 234

Query: 257 NGIINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSS--RVIVG 293
            G+  YT+GQR+GLG+                        EP FV   D   +  RV+ G
Sbjct: 235 VGLSFYTLGQRQGLGIGGVKAKGAELKAAQERGQRGVGEHEPWFVARKDLEKNVLRVVQG 294

Query: 294 P-RESLEVHRIYLRE 307
                L  HR+  ++
Sbjct: 295 HDHPWLLSHRLDAQD 309


>gi|31544324|ref|NP_852902.1| multifunctional FAD synthetase/riboflavin kinase/tRNA-specific
           2-thiouridylase [Mycoplasma gallisepticum str. R(low)]
 gi|81572856|sp|Q7NBZ0|MNMA_MYCGA RecName: Full=Trifunctional protein ribF/mnmA; Includes: RecName:
           Full=FMN adenylyltransferase; AltName: Full=FAD
           pyrophosphorylase; AltName: Full=FAD synthase; Includes:
           RecName: Full=Riboflavin kinase; AltName:
           Full=Flavokinase; Includes: RecName: Full=tRNA-specific
           2-thiouridylase mnmA
 gi|31541168|gb|AAP56470.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930363|gb|ADC30302.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. R(high)]
          Length = 657

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 192/392 (48%), Gaps = 31/392 (7%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASK 62
           +L      +  +VVVA+SGGVDS+V A LL++ GYDV+   +Q ++        S  A  
Sbjct: 277 ALSFFHKQEKPKVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHADD 336

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           +   C A QD  D +++C+ + +  Y F++ E++ N V +     Y  G TP P V CN+
Sbjct: 337 QIQGCDAKQDYEDTQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLCNQ 396

Query: 123 TVKFSDLLSVTRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
             KF   ++  R+   D   +A GHY   +L   DD      +    D  +DQ+YFL   
Sbjct: 397 FGKFGWFINALRKQFGDDIKIAFGHYA--KLITKDDE---VFLVHTKDHNKDQTYFLTML 451

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
            ++QL ++ FPL ++ K +VR++A++  L +A+K DS  ICF+ +  +   +        
Sbjct: 452 KKEQLKNIIFPLSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFLSNYL--AI 509

Query: 241 LEGDIVHLN-GQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRES- 297
            +G I+ ++  + +G H+G+  YTIGQ RR       E +FV   D N++ + V    S 
Sbjct: 510 KKGPIILIDENKKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCDKDYNNNTLYVCYESSK 569

Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFE 353
              L      L + NWL D   +   +   K +++ R  Q       V  +DD V V + 
Sbjct: 570 DQYLSSVSCELEKFNWLIDTKDQ---LFNKKLWIRFRHRQKLQECEIVSYHDDKVIVKY- 625

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
             ++GV  GQ  V Y        V+GGG I+ 
Sbjct: 626 TKQIGVTPGQYGVIYD---QNLWVVGGGKITK 654


>gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis thaliana]
 gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis thaliana]
          Length = 497

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 165/378 (43%), Gaps = 17/378 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L      K +RV V +SGGVDSSV   LL   G+      L+++           C    
Sbjct: 73  LSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWED 132

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+  A+ VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   + 
Sbjct: 133 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 192

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               +  D + +GHY +      D      ++    D+ +DQ+YFL   +Q QL  L FP
Sbjct: 193 AISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFP 252

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG +KK+ VR LA +  L   D+ DSQ ICF+ + K+ D V R      +EG I+   +G
Sbjct: 253 LGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGE--MEGIILEAESG 310

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLRE 307
             LG H G   YTIGQR+GL +  G P +VV  D  ++ V V               +  
Sbjct: 311 DFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 369

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365
           + W          V   +C  K+R          +   DG    V  ++ + G+A+GQ  
Sbjct: 370 LRWNSGKP--SGKVRELRC--KVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFA 425

Query: 366 VFYTSDSNEARVLGGGII 383
            FY         +G G+I
Sbjct: 426 AFYEG----TTCIGSGVI 439


>gi|305432523|ref|ZP_07401685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
 gi|304444562|gb|EFM37213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
          Length = 338

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVIGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P FV+ ++   +++IVG +E L+++   L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V  +DD    +  ++S  G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|160888582|ref|ZP_02069585.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492]
 gi|156861896|gb|EDO55327.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492]
          Length = 350

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 176/370 (47%), Gaps = 26/370 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             D RV++ MSGG DSSV A  L+  GY+V GVT + Y +   +           + DAR
Sbjct: 2   KSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEAGDETGY---------LEDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR+ +I  F   Y  G TP+PC  CN  +K++ L  +  + G
Sbjct: 53  ALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L  G     +  +    D ++DQ++FL+   Q  L  +  P+GD+ K
Sbjct: 113 IYWISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITK 167

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
              R  A E G   +A K DS  +CF     Y   +KR      L G    V   G  LG
Sbjct: 168 NEARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YT+GQRRGLG+ + + +FV      S+ V++ P  SL    ++L E N + + 
Sbjct: 227 WHEGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYKQEMWLGEWNLVENS 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                V+   +  VKIR  +      V    +G + V   +    +A GQA  FY  D  
Sbjct: 287 ----RVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD-- 340

Query: 374 EARVLGGGII 383
              +LGGGII
Sbjct: 341 -GYLLGGGII 349


>gi|325963946|ref|YP_004241852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470033|gb|ADX73718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 369

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 177/366 (48%), Gaps = 27/366 (7%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
           G+DV+GV L L +    + R GS  CC  +D  DA R CD + + +YV+D+ ERF+  V+
Sbjct: 14  GHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLGIPYYVWDFSERFKEDVV 72

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             F   YAAG TP PC+ CN  +KF+ LL     LG D + TGHY +    V +D    R
Sbjct: 73  QDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTGHYAK----VIEDADGNR 128

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDI 220
            + R  D  +DQSY L   T +QL    FPL D   K  VR  A   GL +A+K DS DI
Sbjct: 129 ELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAEAERRGLSVANKPDSHDI 188

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GE 276
           CF+  G     +          GDIV   G  +G H G   +T+GQRRGL +      G+
Sbjct: 189 CFIPDGDTAGWLAEKIEMTT--GDIVDETGTKVGEHPGANAFTVGQRRGLKLGTPAADGK 246

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P FV+ +    ++V+VGP   L +  I   +++W G  + E      F C  ++R+  DP
Sbjct: 247 PRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGLPIAEVGTGAEFDCHAQVRAHGDP 306

Query: 337 VPVFVQRNDDG---------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           VP   +    G         + V       GVA GQ  V Y      +RVLG   I  ++
Sbjct: 307 VPATARMEPAGAGEDPAGSQLVVRLTTPLRGVAPGQTVVLYQG----SRVLGQATIDAAR 362

Query: 388 RSDAVE 393
                E
Sbjct: 363 SLQRAE 368


>gi|289571223|ref|ZP_06451450.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis T17]
 gi|289544977|gb|EFD48625.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis T17]
          Length = 347

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 190/363 (52%), Gaps = 22/363 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARR
Sbjct: 1   MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG 
Sbjct: 60  VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R              + R +D ++DQSY L   T QQL    FP+GD  K 
Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R  A   GL +A+K DS DICF+  G     +          G +V  +G +L  H+G
Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDG 228

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +    
Sbjct: 229 VHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA 288

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
               A      C V++R+  + V    +   D ++V       GVA GQ  V Y  D   
Sbjct: 289 ----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAG 344

Query: 375 ARV 377
             V
Sbjct: 345 DEV 347


>gi|261415477|ref|YP_003249160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371933|gb|ACX74678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 366

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 199/378 (52%), Gaps = 29/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS----RKASKRKGSCCAGQD-- 72
           +  RV V +SGGVDS++ A LLK+ GY+V+G+T+  ++          R+G     +D  
Sbjct: 3   QKKRVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKN 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +A+ V + + + HYV    E ++  V+  F + Y AG TP PCV CN+++KF  L   
Sbjct: 63  IEEAKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHA 122

Query: 133 TRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            R+LG   D  ATGHY R      D       +   +D  +DQ+YFL   + +QL  + F
Sbjct: 123 ARKLGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIF 178

Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           PLG M+K  V+ LA+E+G  D A K +SQD  F++ G Y  +    +    + GD + +N
Sbjct: 179 PLGGMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESD---NVPGDFIDVN 233

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G++LG+H GI++YTIGQR+GL +    EPL+VV +D + ++VI+GPR +L    +   ++
Sbjct: 234 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 293

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQAC 365
           N +   + E + +        IR         +   D     + V F++ +   A GQ  
Sbjct: 294 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 350

Query: 366 VFYTSDSNEARVLGGGII 383
           V Y     +  V+   II
Sbjct: 351 VLY----ADKGVVASAII 364


>gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis lyrata subsp. lyrata]
 gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 165/378 (43%), Gaps = 17/378 (4%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L      K +RV V +SGGVDSSV   LL   G+      L+++           C    
Sbjct: 76  LSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWED 135

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+  A+ VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   + 
Sbjct: 136 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 195

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               +  D + +GHY +      D      ++    D+ +DQ+YFL   +Q QL  L FP
Sbjct: 196 AISDMEYDYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLIFP 255

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250
           LG +KK+ VR LA +  L   D+ DSQ ICF+ + K+ D V        +EG I+    G
Sbjct: 256 LGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCAHIGE--MEGIILEAETG 313

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLRE 307
             LG H G   YTIGQR+GL +  G P +VV  D  ++ V V               +  
Sbjct: 314 DFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 372

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365
           + WL      +  V   +C  K+R          +   DG    V  ++ + G+A+GQ  
Sbjct: 373 LRWLSGKPSGN--VRELRC--KVRHGPSFYSCSFEMEADGDVAVVHLDEDDQGLAAGQFA 428

Query: 366 VFYTSDSNEARVLGGGII 383
            FY         +G G+I
Sbjct: 429 AFYEG----TTCIGSGVI 442


>gi|313147999|ref|ZP_07810192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
 gi|313136766|gb|EFR54126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
          Length = 364

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 36/379 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  E FR  ++  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LATRLGIEHITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G        +    D ++DQS+FL+   Q  L  +  P+G+M K 
Sbjct: 115 FYLATGHYVRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKP 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIA-----------LEGDIV 246
             R  A   G + ++ K DS  +CF     Y   +K+                  +G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ VI+ P +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      V+IR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIIN----ESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIIS 384
            FY        +LGGGII+
Sbjct: 345 AFYKD----GLLLGGGIIT 359


>gi|134102624|ref|YP_001108285.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915247|emb|CAM05360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 348

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 178/360 (49%), Gaps = 19/360 (5%)

Query: 35  VVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTINVSHYVFDY 92
           + AA     G++V+GV L L +++  + R G   CC  +D +DARR  D + +  YV+D+
Sbjct: 1   MAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILGIPFYVWDF 59

Query: 93  EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLY 152
            ERF   VI  F   YAAG TP PC+ CN  +KF  LL     LG D + TGHY R  + 
Sbjct: 60  AERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTGHYARLTVE 119

Query: 153 VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            G       ++ R  D  +DQSY L + T +QL    FPLGD  K  VR  A E GL +A
Sbjct: 120 DG-----VPVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEAAERGLAVA 174

Query: 213 DKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLG 271
            K DS DICF+  G     ++         G +V    G +LG H G+  +T+GQR+GLG
Sbjct: 175 KKPDSHDICFIPDGDTKKFLESKLGQ--KPGQLVDAETGAVLGEHTGVHGFTVGQRKGLG 232

Query: 272 V----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327
           +      G P +V+ L+  S  V VG  + L V  I  +   W      +  +    +C 
Sbjct: 233 IDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIW----PSQRELDGPTECV 288

Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           V++R+         +  D G+ +   +   GVA GQA V Y  +     VLG  +I+ ++
Sbjct: 289 VQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVLGSALIAATR 348


>gi|121613044|ref|YP_999778.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004752|ref|ZP_02270510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|166234848|sp|A1VXD7|MNMA_CAMJJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|87249047|gb|EAQ72009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 338

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+  +D    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|57169043|ref|ZP_00368171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli RM2228]
 gi|57019588|gb|EAL56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli RM2228]
          Length = 338

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P FV+ ++   +++IVG +E L+++   L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V  +DD    +  ++S  G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|57237061|ref|YP_178073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni RM1221]
 gi|86149727|ref|ZP_01067957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86151459|ref|ZP_01069674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86154052|ref|ZP_01072253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597704|ref|ZP_01100937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926860|ref|ZP_01810538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356437|ref|ZP_03223201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218561738|ref|YP_002343517.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|14195288|sp|Q9PJ66|MNMA_CAMJE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658012|sp|Q5HXB2|MNMA_CAMJR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57165865|gb|AAW34644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni RM1221]
 gi|85839995|gb|EAQ57254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85841806|gb|EAQ59053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842466|gb|EAQ59680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190008|gb|EAQ93984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359444|emb|CAL34227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|145844437|gb|EDK21545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345624|gb|EDZ32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315057493|gb|ADT71822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315929157|gb|EFV08382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 338

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+  +D    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|47215507|emb|CAG01169.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 387

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 101/394 (25%), Positives = 156/394 (39%), Gaps = 64/394 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV AMSGGVDSSV A LLKR GY+V GV ++ ++       +G C A +D  DA RVC 
Sbjct: 6   HVVCAMSGGVDSSVAALLLKRRGYNVTGVFMKNWD---LLDERGVCAAEKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +   Y + + + V     + Y  G TP P + CN+ +KF+              
Sbjct: 63  ILDIPFHQVSYVKEYWHKVFSDLLNEYEKGRTPNPDILCNKHIKFNHFYKHAI------- 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                                + +  D  +DQ++FL   +Q+ L    FPL  + K  V+
Sbjct: 116 ---------------NTLSARLYKGADHLKDQTFFLSQISQEALRQTIFPLAGLTKSFVK 160

Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN-- 257
            +A E G   +  + +S  ICF+ +  + + +          G+ V + +G + G H   
Sbjct: 161 KIAAEAGFHHVLKRKESMGICFIGERNFENFILEYLE--PKPGNFVSVEDGTVKGAHKGR 218

Query: 258 -----------------------GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                                  G    T+GQR  +G    +  FVV  D  +  V+V P
Sbjct: 219 RVLCVSSDSCVFTFTHAFVCVPPGWFTLTLGQRARIG-GQKDAWFVVDKDIATGDVLVAP 277

Query: 295 ---RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349
                +L    +     +W+ GD   E A     +C  +        P  V  N DG V+
Sbjct: 278 TTNHPALYRDTVRTARFHWIAGDPPVELARTQMMECHFRFIHQMPLTPCTVTLNLDGSVW 337

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +        +  GQ  V Y  D      LG G I
Sbjct: 338 ISLSHPVRALTPGQYAVLYKGD----ECLGSGKI 367


>gi|242018594|ref|XP_002429759.1| methyltransferase, putative [Pediculus humanus corporis]
 gi|212514771|gb|EEB17021.1| methyltransferase, putative [Pediculus humanus corporis]
          Length = 401

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 104/374 (27%), Positives = 179/374 (47%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             V V +SGGVDS+V A LLK+ GY+VIGV ++ ++        G C   +D+  A+  C
Sbjct: 5   KNVAVGISGGVDSAVAALLLKKRGYNVIGVYMKNWD---LVDENGICSTSEDLEYAKYTC 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139
           + I++  +  ++ + + N V V F   Y  G TP P + CN+ +KF+   +   ++L AD
Sbjct: 62  NQIDIPFHEVNFVKEYWNNVFVAFTKEYEDGYTPNPDILCNKYIKFNAFSNYAFKKLRAD 121

Query: 140 VLATGHYIRSRLYVGDDGKR---RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +ATGHY ++      +  +   +  +    D+ +DQ++FL    Q+ L    FPLGD+ 
Sbjct: 122 AIATGHYAKTSFGNFLENYKPQTKAKLLVAKDIIKDQTFFLSQIPQETLKKTIFPLGDLH 181

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254
           K  V+ +A E  +  ++ K +S  ICF+    +   + +        G  ++ + G+  G
Sbjct: 182 KSEVKKIAEENDMKKLSRKPESMGICFIGSRNFQTFIDQYIK--PKPGKFINMITGKEEG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLRE-INWL 311
           +H+GI  +T+GQR  +      P FVV  D  ++ + V  G   SL    I++ E   W+
Sbjct: 240 KHDGIHMWTVGQRCRIK-GFSVPRFVVKKDPTTANIWVVAGTNHSLLYSYIFVTEKPYWI 298

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370
            +    + +  G K   K +  +       +   +D + V  +K    +  GQ  VFY  
Sbjct: 299 AE--PPNNLYYGCKVHFKFQHVKSTTNCQVISIKNDNLLVIIDKPLRALTQGQYAVFYQ- 355

Query: 371 DSNEARVLGGGIIS 384
              E   LG   I+
Sbjct: 356 ---ENECLGSARIT 366


>gi|157109170|ref|XP_001650555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|157109172|ref|XP_001650556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|157109174|ref|XP_001650557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108868469|gb|EAT32694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108868470|gb|EAT32695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108868471|gb|EAT32696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
          Length = 377

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 169/365 (46%), Gaps = 26/365 (7%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A +LK+ G+DV G  ++ ++        G C   QD  DA+++C  + +     +
Sbjct: 14  DSAVTAYMLKQKGFDVRGAFMKNWD---LIDEAGYCSGEQDWLDAQKLCRQLRIPLEQIN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           + + +   V   F   Y  G TP P + CNR +KF+      R+ +GAD +ATGHY R+ 
Sbjct: 71  FVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADAIATGHYARTN 130

Query: 151 ---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
                   D      +   +D  +DQ++FL   + + L    FP+G M K  V+  A E+
Sbjct: 131 FGPFLEKYDEHGSIRLLAGVDDIKDQTFFLSQISAEALRRTMFPIGAMTKAQVKQYAAEV 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           GL+  A K +S  ICFV +  + D +          GD V  + G+++G H G+ ++T+G
Sbjct: 191 GLEAFARKKESMGICFVGKRSFQDFIAEYID--TKPGDFVDFDTGKVVGTHKGLHHWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVD 322
           Q+  +G  + +P FV   D N + + V        L    +Y+    W+      D + D
Sbjct: 249 QKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVWIN---KPDRLAD 304

Query: 323 G-FKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           G F+C  + + ++  V   +     + + ++V  ++    +  GQ  VFY  +       
Sbjct: 305 GVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAVFYKDE----ECF 360

Query: 379 GGGII 383
           G   I
Sbjct: 361 GSARI 365


>gi|157414371|ref|YP_001481627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|172046984|sp|A8FJL3|MNMA_CAMJ8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157385335|gb|ABV51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747016|gb|ADN90286.1| tRNA-specific 2-thiouridylase mnmA [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 338

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D ++ F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+  +D    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|283955497|ref|ZP_06372992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792958|gb|EFC31732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 338

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+  +D    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKNPVYGLASGQMAVFYDYD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|270294933|ref|ZP_06201134.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|270274180|gb|EFA20041.1| tRNA methyl transferase [Bacteroides sp. D20]
          Length = 350

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 175/370 (47%), Gaps = 26/370 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             D RV++ MSGG DSSV A  L+  GY+V GVT + Y +   +           + DAR
Sbjct: 2   KSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEAGDETGY---------LEDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR+ +I  F   Y  G TP+PC  CN  +K++ L  +  + G
Sbjct: 53  ALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L  G     +  +    D ++DQ++FL+   Q  L  +  P+GD+ K
Sbjct: 113 IYWISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITK 167

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
              R  A E G   +A K DS  +CF     Y   +K       L G    V   G  LG
Sbjct: 168 NEARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKCEVPETLLPGKGRFVDEKGNFLG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YT+GQRRGLG+ + + +FV      S+ V++ P  SL    ++L + N + + 
Sbjct: 227 WHEGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYRQEMWLGDWNLVENS 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                V+   +  VKIR  +      V    +G + V   +    +A GQA  FY  D  
Sbjct: 287 ----RVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD-- 340

Query: 374 EARVLGGGII 383
              +LGGGII
Sbjct: 341 -GYLLGGGII 349


>gi|66546481|ref|XP_624200.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Apis
           mellifera]
          Length = 395

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 172/375 (45%), Gaps = 21/375 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +++V +SGG+DS+V A LLK  GYDV GV ++ ++ +  +   G C   +D   A  +C
Sbjct: 3   KKIIVGISGGIDSAVTAFLLKNKGYDVTGVFMKNWDIKNET---GKCQIDEDKEHAEWIC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             + +     ++ + + N +       Y  G TP P + CN+ +KF    +  R +L AD
Sbjct: 60  KKLKIPFVEVNFVKEYWNNIFCYLTEQYENGYTPNPDILCNKYIKFDQFFNFARTKLQAD 119

Query: 140 VLATGHYIRSRLYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +ATGHY ++      +         + +  DL +DQ++FL    QQ L    FPLG+  
Sbjct: 120 AIATGHYAKTSFGPYLEHFKLNTNVKLLQAKDLGKDQTFFLCQVPQQALRYFMFPLGNYL 179

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
           K+ V+ +A E+GLD I  K +S  ICF+ +  + + +    +     GD + L+ G+++G
Sbjct: 180 KKDVKKIAEEIGLDKIVHKKESTGICFIGKRNFQNFISEYISD--KPGDFIDLDNGKVVG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311
           +H G   +T+GQ   LG       F+   D  S+ +IV       +L    I      W+
Sbjct: 238 KHKGFHYWTVGQNVKLG-GYPIAYFIYKKDIQSNNIIVVKGTNHPALYTDFIITETPYWI 296

Query: 312 GDGLFE-DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369
                E ++      C  + +     +   V +N  + + +  ++    +  GQ  V Y 
Sbjct: 297 SSEPNELNSYYRTMCCNFRFQHRDSLISCIVHKNLRNELMIRIDQPLRSLTEGQFVVLYK 356

Query: 370 SDSNEARVLGGGIIS 384
            +      LG   IS
Sbjct: 357 GE----ECLGSAEIS 367


>gi|258593690|emb|CBE70031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [NC10
           bacterium 'Dutch sediment']
          Length = 357

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 129/328 (39%), Positives = 182/328 (55%), Gaps = 12/328 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AALL   GY+V+G++L+L      +  +R   CC+ +D  DAR V   + 
Sbjct: 1   MSGGVDSAVAAALLIEQGYEVVGISLKLLPEGAGNGSERADRCCSVKDAEDARLVAAQLG 60

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + +Y+ +YE +F+  VI  F  +Y  G TP PCV CN  +KF  LL     LGA  LATG
Sbjct: 61  IPYYILNYESQFQREVIREFTEAYLGGLTPNPCVRCNELIKFGSLLQQALGLGAKRLATG 120

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R      +D + R ++ R +D ERDQSYFL++ TQ+QL  + FP+G M K+ VR+ A
Sbjct: 121 HYARVER---EDMRGRYLLRRGVDEERDQSYFLYSLTQEQLAGICFPVGHMTKDQVRERA 177

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              GL IA K+DSQD+CFV    Y   ++         G I    G+ILG+H G+  YT+
Sbjct: 178 AAYGLRIAAKADSQDLCFVGH-DYRTFLQERCGDRLRPGPITDRTGRILGQHEGVALYTV 236

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQR GL +A G P +V+ LD  ++ V+VG R+ L         +N +      D +    
Sbjct: 237 GQRNGLRLASG-PFYVIRLDPQTNAVVVGRRDELLRREFVAERLNLVA----YDRLTAER 291

Query: 325 KCFVKIRSSQDPVPVFVQRNDD-GVYVD 351
              VK+RS Q  +P  +    D  + V 
Sbjct: 292 PVLVKVRSRQAAMPATILPLGDSRIRVR 319


>gi|315453196|ref|YP_004073466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter felis ATCC 49179]
 gi|315132248|emb|CBY82876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter felis ATCC 49179]
          Length = 346

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 187/372 (50%), Gaps = 32/372 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V MSGGVDSS  A LL++ G++++GV L+L+   +        C        + V 
Sbjct: 1   MKVAVLMSGGVDSSYSAYLLQQAGHELLGVYLKLHGKEEKHALYIRNC--------QEVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+   V D +  F+  V   F  +Y  G+TP PC  CN  +KF   L      G + 
Sbjct: 53  KFLNIPFEVVDLQAEFKQGVYDAFVQAYEQGQTPNPCALCNPLMKFGLGLEFALNQGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R     G        +    D  +DQSYFL+A  Q+ +  L FPLGD+ K  +
Sbjct: 113 IATGHYARLEKVGG-----VLRIKEAKDTSKDQSYFLYALPQKAIDRLLFPLGDLLKSEI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA E    +G D+    +SQ+ICFV+   Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALEKMPFLG-DLQTYKESQEICFVE-TNYIDTLKKHVQ-VDQEGIVRNLKGEVVGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  +    EP FVV +D   + +IVG +E+L +  +  R         
Sbjct: 225 RGYMHYTIGKRKGFTIKGAHEPHFVVGIDALKNEIIVGQKEALAICTLEARN-------K 277

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
              +     +  VK+R    P    ++  DD +   FE    GVA GQA V Y  D    
Sbjct: 278 SLPSNFKEGEYLVKVRYRSTPTSAHIRLEDDTIRARFENPVYGVALGQALVIYDQD---- 333

Query: 376 RVLGGGIISGSK 387
           RVLGGG+I+ S 
Sbjct: 334 RVLGGGVITKSY 345


>gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 376

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 167/385 (43%), Gaps = 32/385 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDSSV   LL   G+      L+++           C    D+ +A+ VCD 
Sbjct: 3   IAVLLSGGVDSSVALRLLCAAGHSCTAYYLKIWFQEDFENFWSECPWEDDLKNAQAVCDE 62

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V   V  + + + N V+    S   AG TP P + CN  VKF   L   +    D +A
Sbjct: 63  VGVELRVVHFTDEYWNLVVSHSISEIQAGRTPNPDILCNTCVKFGAFLDHIKDEQFDRVA 122

Query: 143 TGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +GHY R R     D   + R  +    D  +DQ+YFL   TQ+QL  L FPLG   K  V
Sbjct: 123 SGHYARIRKIYNCDTGAEERTELLLCPDEVKDQTYFLSHLTQEQLSRLIFPLGGFTKAEV 182

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259
           R LA  MGL   ++ DSQ ICF+ + K+ D + +       EG ++    G++LG H G 
Sbjct: 183 RQLAEVMGLYNKNRKDSQGICFLGKVKFSDFIAKHLGES--EGRMLEAETGELLGLHKGF 240

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             YT+GQR+GL  + G P FVV  D  ++ V V      E        +   NW      
Sbjct: 241 WFYTMGQRKGLRFSNG-PWFVVAKDIVNNVVFVSRHYFSEDKRRRSFRVDSFNWFSGFPP 299

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---------------GVYVDFEKSEVGVAS 361
            D    G +C  K+R         +    D                  V+  + + G+A 
Sbjct: 300 ADN--SGLQC--KVRHGPRFYTCSLDIQTDSTDSEAVTKESKSLTSAVVNLNEDDQGLAP 355

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQ   FY +       LG  +I+ +
Sbjct: 356 GQYAAFYQN----GVCLGSAVITET 376


>gi|160903153|ref|YP_001568734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Petrotoga mobilis SJ95]
 gi|205816886|sp|A9BIS3|MNMA_PETMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160360797|gb|ABX32411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Petrotoga mobilis SJ95]
          Length = 367

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 185/372 (49%), Gaps = 21/372 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYD 75
            + +V++ MSGGVDSSV A LLK   Y VIG+  +  +    S   ++K  CC+  D  D
Sbjct: 2   SNKKVLMLMSGGVDSSVAAYLLKEQNYHVIGLHFKTVSDVVFSLIPEKKKVCCSPSDTQD 61

Query: 76  ARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           A ++ D +++    + D ++ F+  +I  F  +Y  G+TP PC+ CNR  KF   L +  
Sbjct: 62  ALKIADKLDLDDFQIVDIKKEFKEKIIDYFIKTYKEGKTPNPCMLCNRFFKFGKALEIAH 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             GAD +++GHY+        +     I+ + +D  +DQSYFL    +  L  L FPLG+
Sbjct: 122 SYGADWVSSGHYLIKEYS---NKYSTYIIKKGVDQYKDQSYFLSYIDKNTLPKLHFPLGN 178

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           M K  +RD+A ++GL +A+K DSQ++CF+    Y   +K  N     EG +  L G  +G
Sbjct: 179 MYKVEIRDIANKIGLSVANKPDSQELCFIPDNDYRRFLKE-NGVTTEEGKVYDLEGNEIG 237

Query: 255 RHNGIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            H G +NYTIGQR G+         L V  +    + +IV P E +    + ++ +N+  
Sbjct: 238 THTGYMNYTIGQRSGISYYKNANVKLHVYKIFPQKNVLIVAPTEEMYSKELIVQNVNFFV 297

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371
           D           + F ++R   +  P  V++  D  + V F++    V  GQ    Y   
Sbjct: 298 DF-------KEIEGFCRVRKKSEEKPAVVKKIADHTLKVSFKEPIFAVTPGQFATIYD-- 348

Query: 372 SNEARVLGGGII 383
                VL  G+I
Sbjct: 349 -ESGVVLASGVI 359


>gi|153951834|ref|YP_001397317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|166234847|sp|A7H1D7|MNMA_CAMJD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152939280|gb|ABS44021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 338

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGTHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+  +D    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYNHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|284925349|gb|ADC27701.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 338

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK  G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   C VKIR      P  V+  +D    +  +    G+ASGQ  VFY  D    +
Sbjct: 279 ----KELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 331 VIASGFIE 338


>gi|157736745|ref|YP_001489428.1| tRNA-specific 2-thiouridylase MnmA [Arcobacter butzleri RM4018]
 gi|205810156|sp|A8ES35|MNMA1_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|157698599|gb|ABV66759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
          Length = 345

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 198/374 (52%), Gaps = 35/374 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N              +++     
Sbjct: 2   SKKKVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDG-------YHEKNLGYIED 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +N+ +Y+ D  ++F   V   F  SY  G TP PCV CNR +KF  +L   +Q GA
Sbjct: 55  VAKFLNIKYYILDLADKFSKEVYDYFVDSYLTGTTPNPCVKCNRQIKFGAMLDFAKQHGA 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY ++      DGK         D  +DQSYFL    +  L  + FPL   KKE
Sbjct: 115 SYLATGHYAKT------DGKFFYE---ADDKTKDQSYFLSQVDKDALKYMMFPLSTYKKE 165

Query: 199 SVRDLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            +     ++ +    I +KS+SQ+ICFV+   Y DVVK+ +A I  EGD++  NG+++G+
Sbjct: 166 DIVKFGAKLDVAYKKITEKSESQEICFVETV-YTDVVKK-HANIDQEGDVLDENGKVVGK 223

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGD 313
           H G  +YTIG+RRG  V    EP FV  L+   + ++VG +E+LEV+ +    +N ++ D
Sbjct: 224 HKGFAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVVGNNLNMFIDD 283

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                     F C VK+R      P  VQ  D+  Y+  ++   GVA GQ  VFY  +  
Sbjct: 284 T--------KFSCNVKLRYRSVSTPCEVQIKDEKAYITLKEPVYGVAKGQLAVFYHEE-- 333

Query: 374 EARVLGGGIISGSK 387
             +V+G   I  +K
Sbjct: 334 --KVIGSAWIESTK 345


>gi|194912221|ref|XP_001982459.1| GG12823 [Drosophila erecta]
 gi|190648135|gb|EDV45428.1| GG12823 [Drosophila erecta]
          Length = 411

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 176/392 (44%), Gaps = 28/392 (7%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G++V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAERGFNVLGVFMRNWDEMDEV---GRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + LG D +ATGHY  + 
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYAGNS 130

Query: 151 L---YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           L     G        +  P D  +DQ++FL     + L    FPLGD +K  V+DLA+++
Sbjct: 131 LGNFLEGTASNDEARLLIPADTFKDQTFFLAGIPHKALQRTMFPLGDWQKSQVKDLAKKI 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           GL  +A+K +S  ICFV +  + D ++     ++  G  + ++ G ++G H GI  +T+G
Sbjct: 191 GLQRLANKKESTGICFVGKRNFKDFIQEYI--VSKTGPFLDIDSGAVVGHHEGIHQWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFE-DAVV 321
           QR  L   + +P FV   +  S+ + V       +L    I +   NWL     +  +  
Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQKMLSDT 307

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +C  + + ++  V   ++ +  +  +V+ +     +  GQ  VFY    N+   LG 
Sbjct: 308 GSLRCRFRFQHTKPLVVCHLKISPSNSFHVELDAPLRAITPGQYAVFY----NDTACLGS 363

Query: 381 GII-------SGSKRSDAVEESLLSVIGDEFP 405
             I         ++   A   +L+S    E P
Sbjct: 364 ARILSANPLKKDAQTQQAHAANLVSSSTGEIP 395


>gi|194768511|ref|XP_001966355.1| GF22123 [Drosophila ananassae]
 gi|190617119|gb|EDV32643.1| GF22123 [Drosophila ananassae]
          Length = 388

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 174/385 (45%), Gaps = 23/385 (5%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LLK  GY V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVTAHLLKERGYSVLGVFMRNWDE---FDEAGRCSGEADLKDAEWACRRLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + L  D +ATGHY R+ 
Sbjct: 71  YVREYWTAVFSQFLEDYQQGLTPNPDILCNRHIKFDLFHRHCLESLNYDAVATGHYARNS 130

Query: 151 ----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
               L      +    +  P D  +DQ++FL    ++ L    FPLGD+ K  V+ LA +
Sbjct: 131 LGNFLEKATGAEEEARLLIPADTFKDQTFFLAGIARKALQRTMFPLGDLHKAEVKQLAAK 190

Query: 207 MGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTI 264
           +GL  +A K +S  ICFV +  + D ++      + +G  V ++ G ++G H GI  +T+
Sbjct: 191 IGLQRLASKRESTGICFVGKRNFKDFIREYI--TSRDGHFVDVDSGAVVGNHEGIHQWTV 248

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVV 321
           GQR  L   + +P FV   + +S+ + V       +L   R+++   NWL          
Sbjct: 249 GQRCRLSSFL-QPYFVARKEASSNTIYVAAGHDHPALLSTRMHIDPPNWLCGESQRRCFS 307

Query: 322 DG-FKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           +G  +C  + + ++  V   V+ +  +   V+ +     +  GQ  VFY     E   LG
Sbjct: 308 EGVLRCRFRFQHTKPLVDCCVRLSPANQFQVELDAPLRAITPGQYAVFYD----ETACLG 363

Query: 380 GGIISGSKRSDAVEESLLSVIGDEF 404
              I  ++    +E   L  +G  F
Sbjct: 364 SARILTAE-PLRMEAEKLKGLGSSF 387


>gi|262203144|ref|YP_003274352.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Gordonia bronchialis DSM 43247]
 gi|262086491|gb|ACY22459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Gordonia bronchialis DSM 43247]
          Length = 373

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 145/386 (37%), Positives = 198/386 (51%), Gaps = 26/386 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +  A +     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSTAPGALRTGSRGCCSREDASDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF++ VI  F ++YAAG+TP PC+ CN  VKF+ L      LG D
Sbjct: 61  ADVLGIPFYVWDFADRFKDDVIDEFVAAYAAGQTPNPCLTCNEKVKFAALAEKAVALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LATGHY R       DG+    + R +D ++DQSY L   T++QL    FP+GD  K  
Sbjct: 121 ALATGHYARLA-----DGE----LRRAVDADKDQSYVLAVLTRKQLGRAMFPVGDTPKPE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           +R  A   GL +A+K DS DICF+  G     +          G +V    G  L  H G
Sbjct: 172 IRAEAARRGLSVANKPDSHDICFIPSGDTRAFLGARIGL--RPGAVVDAATGDRLADHEG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+    A G+P +V  +D +S  V VG    LEV  I  R   W    
Sbjct: 230 VHGFTIGQRKGLGIDAPAADGKPRYVTDIDPDSGTVTVGTAADLEVWSISARRAVWTSGH 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFYTS 370
             +  V     C V++R+     P      D     G+ ++  +   GVA GQA V Y  
Sbjct: 290 TPDGPV----DCVVQVRAHGGLAPARATPVDRDGEPGIEIELTEPLTGVARGQAAVLYLP 345

Query: 371 DSN-EARVLGGGIISGSKRSDAVEES 395
           D+     VLG G I+ +    AV  S
Sbjct: 346 DAQRGDLVLGCGRIAATSARGAVAPS 371


>gi|325299477|ref|YP_004259394.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
 gi|324319030|gb|ADY36921.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
          Length = 356

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 179/374 (47%), Gaps = 26/374 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  KD RV++ MSGG DSSV A LL+  GY+V GVT + Y     +           + D
Sbjct: 2   EKEKDKRVLLGMSGGTDSSVAAILLQDAGYEVTGVTFRFYEKEGDTAY---------LDD 52

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR +C  +++ H V+D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  +
Sbjct: 53  ARELCSRLHIPHIVYDVREVFRKHIITYFIDEYLKGRTPVPCTLCNNRLKWPLLKRLADE 112

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                +A+GHY++ R         R  + +  D ++DQS+FL+   Q  +  +  PLG++
Sbjct: 113 REIPFIASGHYVQKRFI-----GERWHIVQGADPDKDQSFFLWGLPQDIIARMVLPLGNL 167

Query: 196 KKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQIL 253
            K  VR++A E G L +A K DS  +CF   G Y   ++R   AG  + G I       +
Sbjct: 168 TKTRVREIASERGFLKVASKRDSLGVCFCP-GDYRTYLRRHTQAGAIVPGPIFDERRNYM 226

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLG 312
           G H G   YTIGQRRGLGV   + LFV  +    + VI+     +LE    YL   +   
Sbjct: 227 GTHEGYPFYTIGQRRGLGVYRNKALFVKEIIPEENAVILADDLRALEHTAFYLSHWHL-- 284

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
               E  +    +  VKIR  +      V    D+ + V   +    +A GQA  FY  D
Sbjct: 285 -PAPEVVLGSQAELIVKIRYRKQANRCSVVLTPDNRLQVRLHEPLASIACGQAAAFYRGD 343

Query: 372 SNEARVLGGGIISG 385
                VLGGGII  
Sbjct: 344 I----VLGGGIIDR 353


>gi|224536736|ref|ZP_03677275.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521652|gb|EEF90757.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 350

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 172/353 (48%), Gaps = 23/353 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++ MSGG DSSV A LL+  GY+V GVT + Y+S             + + DAR + 
Sbjct: 5   KRVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSE---------GFEESLDDARNLA 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+ H ++D  E FR  +I  F   Y +  TP+PC  CN  +K+  L  +  ++G   
Sbjct: 56  SRLNIPHIIYDARELFRERIIRYFVDEYLSAHTPVPCTLCNNELKWPLLAKIADEMGIYW 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ++TGHY+R     G        +    D ++DQ++FL+   Q  L  +  P+GD  K  V
Sbjct: 116 ISTGHYVRKVFRDG-----YYFIAPAADRDKDQTFFLWGLQQNILERMLLPMGDWTKNEV 170

Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILGRHN 257
           R  A + G +  A K DS  +CF     Y   ++R     AL G    +  +G  LG H 
Sbjct: 171 RAYAAKRGFERTATKKDSLGVCFCPM-DYRSFLQREVPQDALPGKGQFLDESGTFLGWHE 229

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQRRGLG+ +  P+FV  + K  + VI+ P  SL    + L++ N +      
Sbjct: 230 GYPFYTIGQRRGLGIHLNRPVFVKEIHKERNEVILAPLASLYKEEMLLKDWNIVDTS--- 286

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
             +++     V+IR  +      V   D+  ++V   +    +ASGQA  FY 
Sbjct: 287 -RLLNSEDVIVRIRYRKQANHCTVSITDENLLHVLLREPLESIASGQAAAFYD 338


>gi|290999445|ref|XP_002682290.1| predicted protein [Naegleria gruberi]
 gi|284095917|gb|EFC49546.1| predicted protein [Naegleria gruberi]
          Length = 408

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/392 (31%), Positives = 199/392 (50%), Gaps = 34/392 (8%)

Query: 15  DKNPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +K P+  +R+VV MSGGVDSS+ A LLK  G+DV+ + ++ ++S +    +  C   +D 
Sbjct: 25  EKKPRGQIRIVVGMSGGVDSSLTACLLKEFGFDVVSLHMRNWDSSEEDPSREHCTFTKDW 84

Query: 74  YDARRVCDTINVSH-----YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            D + +C+T  + H     +  ++ +++ N V       Y+ G+TP P + CN+ +KF  
Sbjct: 85  NDVKVICETFGIKHVGSSFHPVEFIDQYWNDVFEKLLDGYSIGQTPNPDLFCNKFIKFDA 144

Query: 129 LLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +L+    + GAD +ATGHY +   Y  +       + R +D  +DQSYFL    ++    
Sbjct: 145 MLNYAIEKGGADYIATGHYAQLG-YSDNGETSNTHLLRAIDHSKDQSYFLSFVNKKAFEK 203

Query: 188 LRFPLGD-MKKESVRDLAREM---GLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
             FPLG  +KKE VR LAR+      ++  + DS  ICF+ + K+ D + +     + +G
Sbjct: 204 SLFPLGQFLKKEEVRVLARDHFKFPNELWGRKDSVGICFIGKRKFKDFLSKYID--SSKG 261

Query: 244 DIVHLNGQ--ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESL 298
           +IV +  +  ILG H+G   YTIGQ   L   M E  FV   D  ++ + V P     SL
Sbjct: 262 NIVSIEDKTTILGEHDGASFYTIGQGMCLS-GMKEKWFVCEKDFKNNILYVCPGNNHPSL 320

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDF--- 352
                 +   +WL      + + +  + FVK+R +Q +P    V  ++D     +     
Sbjct: 321 LKSSFTISNCHWL------ENIDNSKEYFVKVRYNQREPFRCKVSYSNDSSLCDITLADS 374

Query: 353 EKSEVGVASGQACVFYTSDSN--EARVLGGGI 382
           E+   G+ASGQ  V Y S+S   E   +GGGI
Sbjct: 375 EEPARGIASGQIAVLYDSNSQFSEQICVGGGI 406


>gi|195469645|ref|XP_002099747.1| GE16655 [Drosophila yakuba]
 gi|194187271|gb|EDX00855.1| GE16655 [Drosophila yakuba]
          Length = 388

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 168/366 (45%), Gaps = 21/366 (5%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G++V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAERGFNVLGVFMRNWDE---VDEMGRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + LG D +ATGHY R+ 
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130

Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           L    +G        +  P D  +DQ++FL    Q+ L    FPLGD +K  V++LA+++
Sbjct: 131 LGNFLEGIASNNEARLLIPADTFKDQTFFLAGIPQKALQRTMFPLGDFQKSQVKELAKKI 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           GL  +A+K +S  ICFV +  + D ++      +  G  + ++ G ++G H GI  +T+G
Sbjct: 191 GLQRLANKKESTGICFVGKRNFKDFIQEYI--TSKTGPFLDIDSGAVVGHHEGIHQWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFE-DAVV 321
           QR  L   + +P FV   +  S+ + V       +L    I +   NWL        A  
Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQRILADT 307

Query: 322 DGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               C  + + ++  V   ++ + ++  +V+ E     +  GQ  VFY+        LG 
Sbjct: 308 GSLSCRFRFQHTKPLVGCHLRLSPENSFHVELEAPLRAITPGQYAVFYSD----TACLGS 363

Query: 381 GIISGS 386
             I  +
Sbjct: 364 ARILSA 369


>gi|313673847|ref|YP_004051958.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940603|gb|ADR19795.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 343

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 188/367 (51%), Gaps = 29/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVVAMSGGVDSSV A +LK+ GYDV+GVT++++ +             + + DA  V 
Sbjct: 2   KRVVVAMSGGVDSSVTAYILKKMGYDVVGVTIKMFEN-----------QEKYLKDAEAVA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++   + D    F+  VI  F +SY  G TP PC  CNR  KF  L +   + GAD 
Sbjct: 51  KKLDIKWEMIDKTIEFQETVISYFINSYRKGLTPNPCAYCNRNAKFFFLYNEMLKYGADH 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY       G      + + +  + ++DQSY+L       L  L FPLG M K  V
Sbjct: 111 IATGHYADIVEVDG-----HKYIKKSTNTKKDQSYYLALIRDDLLDKLLFPLGMMDKSEV 165

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNGI 259
           R +A  +GL++A+K DSQ++CF++ G Y D +K+ I+     +G  ++ N +I+ +H GI
Sbjct: 166 RKIASSIGLEVAEKKDSQEVCFLEGGDYRDYLKKMIDPNKIKKGYFIYNNERIM-KHEGI 224

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGLG+   +PL+V ++D  +  + +          + L   NW G      +
Sbjct: 225 EFYTVGQRRGLGIGYHKPLYVQHIDPVTFDIHLTDENRSGYRGVRLNNCNWFG------S 278

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
               F+   ++R         V+   DD   + F++ +   A GQ    Y  D     +L
Sbjct: 279 PKKLFRAQARLRYRMKDANTLVEILPDDRADLLFDEPQPFPAPGQVAAIYNKDI----LL 334

Query: 379 GGGIISG 385
           GGG I G
Sbjct: 335 GGGFIEG 341


>gi|157117360|ref|XP_001658729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
 gi|108876095|gb|EAT40320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes
           aegypti]
          Length = 377

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 169/365 (46%), Gaps = 26/365 (7%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A +LK+ G+DV G  ++ ++        G C   QD  DA+++C  + +     +
Sbjct: 14  DSAVTAYMLKQKGFDVRGACMKNWD---LIDEAGYCSGEQDWLDAQKLCRQLRIPLEQIN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           + + +   V   F   Y  G TP P + CNR +KF+      R+ +GAD +ATGHY R+ 
Sbjct: 71  FVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADAIATGHYARTN 130

Query: 151 ---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
                   D      +   +D  +DQ++FL   + + L    FP+G M K  V+  A E+
Sbjct: 131 FGPFLEKYDEHGPIRLLAGVDDIKDQTFFLSQISAEALRRTMFPIGAMTKAQVKQYAAEV 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           GL+  A K +S  ICFV +  + D +          GD V  + G+++G H G+ ++T+G
Sbjct: 191 GLEAFARKKESMGICFVGKRSFQDFIAEYID--TKPGDFVDFDTGKVVGTHKGLHHWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVD 322
           Q+  +G  + +P FV   D N + + V        L    +Y+    W+      D + D
Sbjct: 249 QKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVWIN---KPDRLAD 304

Query: 323 G-FKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           G F+C  + + ++  V   +     + + ++V  ++    +  GQ  VFY  +       
Sbjct: 305 GVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAVFYKDE----ECF 360

Query: 379 GGGII 383
           G   I
Sbjct: 361 GSARI 365


>gi|325003016|ref|ZP_08124128.1| tRNA-specific 2-thiouridylase MnmA [Pseudonocardia sp. P1]
          Length = 366

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 193/378 (51%), Gaps = 25/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +R A       CC+ +D  DA R 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSRTRDAMRSGSRGCCSKEDSADAARA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV+D  E F   V+  F ++YAAGETP PC+ CN  +KF+ +L     LG D
Sbjct: 61  ADVLGIPYYVWDLSEEFARDVVDDFVAAYAAGETPNPCLRCNEKIKFAAVLDKALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R    V         + R  D ++DQSY L      QL    FP+GD  K  
Sbjct: 121 AVCTGHYARLDPAV-------PSLRRSADADKDQSYVLAVLRADQLRHAMFPVGDTPKPE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           +R  A  +GL +A K DS DICF+  G     ++      +  G++V    G +LG H+G
Sbjct: 174 IRAEAERLGLRVAGKPDSHDICFIPTGDTQGFLRERLG--SQPGELVDAGTGDVLGSHDG 231

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +T+GQR+GLG+    A G P +V+ ++  S  V VGP  +L+V  I  R   W   G
Sbjct: 232 VHGFTVGQRKGLGIDRPAADGRPRYVLGIEPVSGTVRVGPESALDVSGITARSPVWTSGG 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND------DGVYVDFEKSEVGVASGQACVFY 368
               A    F C V++R+     P  V  +       DGV +   +   GVA GQA  FY
Sbjct: 292 ----APDGPFGCVVQVRAHGGIAPAEVTPSGRGDDGVDGVEIALAEPLRGVAPGQAVAFY 347

Query: 369 TSDSNEARVLGGGIISGS 386
             D +   VLG   I+ +
Sbjct: 348 RPDDDGDVVLGSATITAT 365


>gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana]
 gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana]
          Length = 421

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 164/373 (43%), Gaps = 17/373 (4%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             K +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A
Sbjct: 2   PEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + VC+ ++V   V    + +   V+      Y  G TP P V CN  +KF   +     +
Sbjct: 62  KHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDM 121

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D + +GHY +      D      ++    D+ +DQ+YFL   +Q QL  L FPLG +K
Sbjct: 122 EYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVK 181

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGR 255
           K+ VR LA +  L   D+ DSQ ICF+ + K+ D V R      +EG I+   +G  LG 
Sbjct: 182 KDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGE--MEGIILEAESGDFLGN 239

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLG 312
           H G   YTIGQR+GL +  G P +VV  D  ++ V V               +  + W  
Sbjct: 240 HRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 298

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370
                   V   +C  K+R          +   DG    V  ++ + G+A+GQ   FY  
Sbjct: 299 GKP--SGKVRELRC--KVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEG 354

Query: 371 DSNEARVLGGGII 383
                  +G G+I
Sbjct: 355 ----TTCIGSGVI 363


>gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella multiformis DSM 16608]
 gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella multiformis DSM 16608]
          Length = 360

 Score =  362 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 167/371 (45%), Gaps = 23/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L R G       +++       K +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYELARLGLHPDCFYIRI---GPEEKEEWDCSSEEDMEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         + D  + + N V         AG TP P V CNR +KF          G 
Sbjct: 64  VAHRFGCRLQIVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHGY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K+
Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAVFPIGHYEKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A +  L  A + DSQ ICF+    Y + V+R        GDI+ L  G+ +G H 
Sbjct: 178 EVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYLGE--QPGDIIELETGKKIGEHR 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FVV  D   + + V               L + ++L +G
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVVRKDVVQNILYVSHGYDPETAYKSDFPLHDFHYLTEG 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           +         K   KIR + +  P  V++  DG   +   +   GVA GQ CV Y  D  
Sbjct: 295 VTGLPE----KITFKIRHTPEYHPATVEQLPDGKSIIHSAEPIHGVAPGQFCVVY--DEC 348

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 349 HHRCYGSGEIA 359


>gi|320096111|ref|ZP_08027710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976950|gb|EFW08694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 515

 Score =  362 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 144/387 (37%), Positives = 197/387 (50%), Gaps = 25/387 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +     +     CC+ +D  DA R 
Sbjct: 142 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPAQCRIGSRGCCSVEDAGDAARA 201

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +TI +  YV+D  E F   VI  F + Y AG TP PCV CN  VKF +L    R LG D
Sbjct: 202 AETIGIPFYVWDLAEEFEQTVITDFIAQYRAGRTPNPCVRCNEFVKFRELADRARALGFD 261

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            + TGHY         +G++   + R  D  +DQSY L      +L  +  PLG    K 
Sbjct: 262 AVCTGHYAAIV-----EGEQGPELHRGADAAKDQSYVLAVMGPDELRRVVLPLGGAPSKA 316

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A  +GL ++DK DS DICF+  G     ++      + EG+IV  +G++LGRH G
Sbjct: 317 WVRAEAERLGLGVSDKPDSYDICFIPDGDTQGFLRAHLG--SAEGEIVTPDGRVLGRHGG 374

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYT+GQR+GLG+      G P +V+     +++V+VG  E L V RI   +  WL   
Sbjct: 375 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLTVDRIECSDAVWLAPD 434

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGV----YVDFEKSEVGVASGQACVFY 368
              DA   G   + + R+   P+PV   V+R   G      V   +   GVA GQ+ V Y
Sbjct: 435 DPGDAASGGL--YAQFRAHGRPLPVASLVRRAPGGAGARFVVGLAEGARGVARGQSLVVY 492

Query: 369 TSDSNEARVLGGGIISGSKRSDAVEES 395
             D    RVLG G I  + R+ A   S
Sbjct: 493 RGD----RVLGEGTIDATSRAGAALAS 515


>gi|57241962|ref|ZP_00369902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis RM3195]
 gi|57017154|gb|EAL53935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis RM3195]
          Length = 338

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 201/368 (54%), Gaps = 34/368 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS+V A  LK+ G++VIG  ++L+               +++    +V 
Sbjct: 1   MKILVAMSGGVDSTVTAYKLKKAGHEVIGCYMKLHGKP--------GYHEENIAKVEKVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + +++ D +E F+  V +PF ++Y  G+TP PC  CNR +K   LL   + LG + 
Sbjct: 53  KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R      ++G     +   +D  +DQSYFL    ++ L  L FPLG+MKKE V
Sbjct: 113 LATGHYARL-----ENG----CIKVAVDESKDQSYFLANADKEALQYLIFPLGEMKKEDV 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A   E+    A + +S +ICFV+   Y DV+++      ++G+++  +G+++G HNG
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVENT-YVDVLEQFM-DTKIKGEVLDSSGKVVGEHNG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    +P FV+ ++   ++++VG +E L++    L  IN   D    
Sbjct: 222 YMHYTIGKRRGFEVRGAHDPHFVLKINPKENQIVVGTKEELKIKEFKLENINLFIDK--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 F C VKIR     VP  V  +++    +  ++   G+ASGQ  VFY  D    R
Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNAQISLKEPVYGLASGQMAVFYEED----R 330

Query: 377 VLGGGIIS 384
           V+  G IS
Sbjct: 331 VIASGFIS 338


>gi|51246807|ref|YP_066691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotalea psychrophila LSv54]
 gi|81641104|sp|Q6AIZ6|MNMA_DESPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50877844|emb|CAG37684.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotalea psychrophila LSv54]
          Length = 344

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 112/360 (31%), Positives = 181/360 (50%), Gaps = 25/360 (6%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +AMSGGVDS+  A L K+ G  V+G  ++L      ++R              ++   ++
Sbjct: 8   IAMSGGVDSTATAILQKQKG-PVLGFFMKLNQPDYETQRDR----------VSQIAQKLD 56

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   + D  E F+  V+  F++SY  G TP PC+ CN+ +KF        + G + +ATG
Sbjct: 57  IKLEIIDLTEEFQEYVLKYFSASYFKGLTPNPCIICNKEIKFGLFQQAILRQGVERIATG 116

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY +              + + +D  +DQSYFL   +Q+QL    FPLG M K ++ DL 
Sbjct: 117 HYAQIHKTAA-----GYQLHKGVDPHKDQSYFLSRLSQEQLAHSIFPLGGMHKGAIYDLV 171

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              G      ++SQD+CF++Q    D +++     A  G+IV  +G+ILG+H G+  YT+
Sbjct: 172 EAHGFHDFRGTESQDVCFLEQDNVVDFLEQTAEFSASSGNIVMNDGKILGKHKGLHRYTV 231

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQRRGLG++   PL+V+ LD  ++ VIVG  E L    + + +I+W+     ED      
Sbjct: 232 GQRRGLGISYPVPLYVINLDVKNNNVIVGENEQLFHKTMAISDIHWISQPEREDL----L 287

Query: 325 KCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
              V IRS+        + + ++   V F++ +  +  GQ    Y       +VLG G+I
Sbjct: 288 HASVHIRSTHKGAQASVILKENNRASVIFDEPQRAITPGQFATIYKD----TQVLGSGVI 343


>gi|297191915|ref|ZP_06909313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721106|gb|EDY65014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 375

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 140/375 (37%), Positives = 190/375 (50%), Gaps = 25/375 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72
           + + + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC  +D
Sbjct: 3   ETSQRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ LL  
Sbjct: 62  SRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY    L   DDG   R + R  D+ +DQSY L    ++QL    FPL
Sbjct: 122 ALALGFDAVCTGHYATVVL--KDDGS--RELHRASDMAKDQSYVLGVLDERQLAHAMFPL 177

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           GD    K+ +R  A   GL +A K DS DICF+  G     +         EGDIV  +G
Sbjct: 178 GDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGTA--EGDIVDESG 235

Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
           + LG H G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V  +   
Sbjct: 236 KKLGSHEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAI 295

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365
           +  W G      A         ++R+      V  +  D   + V F +   GVA GQA 
Sbjct: 296 KPRWCG-----AAPEGPGTYTAQLRAHGGETEVTAELVDGSELRVTFTEPVRGVAPGQAV 350

Query: 366 VFYTSDSNEARVLGG 380
           V Y       RV+G 
Sbjct: 351 VLYDG----TRVVGS 361


>gi|21357477|ref|NP_652639.1| CG3021 [Drosophila melanogaster]
 gi|74872825|sp|Q9W5B6|MTU1_DROME RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|15291857|gb|AAK93197.1| LD29918p [Drosophila melanogaster]
 gi|22831460|gb|AAF45578.3| CG3021 [Drosophila melanogaster]
 gi|220955682|gb|ACL90384.1| CG3021-PA [synthetic construct]
          Length = 389

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 164/366 (44%), Gaps = 21/366 (5%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAEQGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + LG D +ATGHY R+ 
Sbjct: 71  YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130

Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           L    +G        +  P D  +DQ++FL   +++ L    FPLGD +K  V+DLA+++
Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKI 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           G   +A K +S  ICFV +  + D ++      +  G  + ++ G ++G H GI  +T+G
Sbjct: 191 GFQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKRGPFLDIDSGAVVGHHEGIHQWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE-DAVV 321
           QR  L   + +P FV   +  S+ + V       +L    I +   NWL     +  +  
Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQILSDT 307

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +C  + + ++  V   +  +  +   V+ +     +  GQ  VFY         LG 
Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDD----TACLGS 363

Query: 381 GIISGS 386
             I  +
Sbjct: 364 ARILSA 369


>gi|289679182|ref|ZP_06500072.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae FF5]
          Length = 246

 Score =  362 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 97/254 (38%), Positives = 147/254 (57%), Gaps = 10/254 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R +A + GL  A K DS  ICF+ + ++ D +++     A  G+I    G+++GRH+G++
Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231

Query: 261 NYTIGQRRGLGVAM 274
            +TIGQR+GLG+  
Sbjct: 232 YHTIGQRQGLGIGG 245


>gi|302690264|ref|XP_003034811.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8]
 gi|300108507|gb|EFI99908.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8]
          Length = 350

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 178/369 (48%), Gaps = 30/369 (8%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A L+   GYDV G+ ++ +++R  S     C   +D  D +RV       
Sbjct: 1   MSGGVDSSVTAKLMLDQGYDVSGIYMRNWDTRDESGTDEGCEWKKDWNDVQRV------- 53

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLATG 144
               D  + + N V  P   ++A+G TP P V CNR VKF  L      L A+    ATG
Sbjct: 54  ----DLSKEYWNRVFQPSLDAWASGVTPNPDVLCNRHVKFGALHEHMGLLAAEDTWFATG 109

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R     G     R  +   +D  +DQSY+L +  +  L    FPLG + K  V+ LA
Sbjct: 110 HYARKSWSNG-----RPTLLAGLDPVKDQSYYLASICESNLRPALFPLGTLHKSEVKRLA 164

Query: 205 REMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINY 262
           RE  L +AD+ +S  ICFV  +GK+ + + +   G A  G I  L  G+ +G H G+ NY
Sbjct: 165 REFKLPVADRKESMGICFVGQKGKFKEFLSKYLEGKA--GSIRSLETGEEIGGHEGLWNY 222

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319
           T+G+R  +   M +  +V   D  ++ V V P     +L      +   +W+      + 
Sbjct: 223 TVGERARIPN-MLQRWYVADKDTENNIVYVVPGPDHPALFKRSTSVDHFDWIWKDAPPED 281

Query: 320 V--VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
           +  +DG K FVK      P    V+R   GV +  ++    V+ GQ  V Y  D  E RV
Sbjct: 282 IDSLDGLKAFVKFIYRMSPTRCTVRRQGQGVQILLDEPMRDVSLGQVAVIYHGD--ERRV 339

Query: 378 LGGGIISGS 386
           LG G I+ +
Sbjct: 340 LGCGTITYT 348


>gi|302537071|ref|ZP_07289413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. C]
 gi|302445966|gb|EFL17782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces sp. C]
          Length = 379

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 25/379 (6%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCC 68
           + +L +  + +RV+ AMSGGVDS+V AA     G+DV GV L L ++   S R G   CC
Sbjct: 2   TENLPRTARPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCC 60

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +D  DARR  D I +  Y +D  ERFR  V+  F + Y AG TP PC+ CN  +KF+ 
Sbjct: 61  TIEDSRDARRAADVIGIPFYCWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAA 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL     LG D + TGHY      + ++    R + R  D+ +DQSY L    ++QL   
Sbjct: 121 LLDKALALGFDAVCTGHYAT----IVENADGSRELHRASDMAKDQSYVLGVLDEKQLAHA 176

Query: 189 RFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            FPLGD    K+ +R  A   GL +A K DS DICF+  G     + +       EGDIV
Sbjct: 177 LFPLGDTITTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAKRLGKA--EGDIV 234

Query: 247 H-LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVH 301
               G+ +G H+G   +TIGQR+GL +      G+P +V+ +   ++ V VGP E+L+V 
Sbjct: 235 DGATGEKVGTHDGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVT 294

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
            +      W G                ++R+      VF +  D  + V F +   GVA 
Sbjct: 295 ALTAIRPRWCG-----STPAAPGTYTAQLRAHGGETEVFAEVVDGELRVTFTEPVRGVAP 349

Query: 362 GQACVFYTSDSNEARVLGG 380
           GQA V Y       RV+G 
Sbjct: 350 GQAIVLYDD----TRVVGS 364


>gi|60679769|ref|YP_209913.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|81317158|sp|Q5LIS5|MNMA1_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|60491203|emb|CAH05951.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis NCTC 9343]
          Length = 364

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246
             R  A   G + ++ K DS  +CF     Y   +K           R        G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
            FY        +LGGGII+ + +
Sbjct: 345 AFYKD----GLLLGGGIITMTDQ 363


>gi|269127770|ref|YP_003301140.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermomonospora curvata DSM 43183]
 gi|268312728|gb|ACY99102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermomonospora curvata DSM 43183]
          Length = 358

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 144/375 (38%), Positives = 187/375 (49%), Gaps = 25/375 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ AMSGGVDS+V AA +   G+DV GV + L  N R        CC  +D  DARR  
Sbjct: 4   RVLAAMSGGVDSAVAAARVAEAGHDVTGVHMALSANPRSYRTGARGCCTLEDARDARRAA 63

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  YV+D  ERF   V+  F S YAAG TP PC+ CN  +KF+ LL     LG D 
Sbjct: 64  DVIGIPFYVWDLAERFDRDVVADFVSEYAAGRTPNPCLRCNEKIKFAALLDRALALGFDA 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TGHY R    V         + R +D  +DQSY L   T +QL    FPLGD  K  +
Sbjct: 124 VCTGHYARWENGV---------LRRGVDTAKDQSYVLAVCTPEQLAHAIFPLGDTTKAEI 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R  A   GL +ADK DS DICF+  G     +          G IV   GQ++G H G  
Sbjct: 175 RREAERRGLAVADKPDSHDICFIADGDTRAFLAERLGTA--PGPIVDETGQVVGEHQGAY 232

Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
            YTIGQRRGL +      G P +V+ +   ++ V VGPRE+L+VH I      WL     
Sbjct: 233 AYTIGQRRGLRLGRPAPDGRPRYVLDISPATNTVTVGPREALDVHEIVGERPVWLA---- 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   +C V++R+  +      + + D V +   +   GVA GQA V Y  D    R
Sbjct: 289 -PPPAGPHECQVQLRAHGEVYDCTAEADGDRVRIRLHEPARGVARGQAAVLYDGD----R 343

Query: 377 VLGGGIISGSKRSDA 391
           V+G   I+ + R  A
Sbjct: 344 VIGSSTIALTSRVPA 358


>gi|253564435|ref|ZP_04841892.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5]
 gi|251948211|gb|EES88493.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5]
 gi|301161234|emb|CBW20772.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 638R]
          Length = 364

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLKQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246
             R  A   G + ++ K DS  +CF     Y   +K           R        G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
            FY        +LGGGII+ S +
Sbjct: 345 AFYKD----GLLLGGGIITMSDQ 363


>gi|160883986|ref|ZP_02064989.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483]
 gi|156110716|gb|EDO12461.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483]
          Length = 378

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 112/398 (28%), Positives = 176/398 (44%), Gaps = 52/398 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  LC +  P+GD+ K 
Sbjct: 115 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA-------------------- 237
             R  A E G   +A K DS  +CF     Y   +K   A                    
Sbjct: 170 EARVWAAEHGFQKVATKKDSIGVCFCPM-DYRTFLKNWLAQNNEALAEEEQMMGENQALV 228

Query: 238 -------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290
                       G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  ++   + V
Sbjct: 229 GSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEINPEKNEV 288

Query: 291 IVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349
           ++    +LE   ++L++ N +     ++  +      VKIR  +      +    D  ++
Sbjct: 289 VLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITITPDHLLH 344

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           V   +    +A GQA  FY        +LGGGII  ++
Sbjct: 345 VQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 378


>gi|307719725|ref|YP_003875257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6192]
 gi|306533450|gb|ADN02984.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6192]
          Length = 352

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 180/365 (49%), Gaps = 19/365 (5%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           AMSGGVDSSV A LL   G +V+G+T    N+      +G     ++   AR V   + +
Sbjct: 2   AMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDHEG---FSEEARAAREVASHLGI 58

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATG 144
            H+V +  + + + V+      Y +G TP PCV CNRT+KF  L+   R+ L AD +ATG
Sbjct: 59  EHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYAREVLRADGIATG 118

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R  +    D +    + R     ++QSYFL  T  + L    FPLGD  K+ +R  A
Sbjct: 119 HYARIYV----DAEGGVHLMRGKAGTKEQSYFLAQTRPEDLRHAYFPLGDQTKDEIRTYA 174

Query: 205 REMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           R  G+  A++ +SQD+CF   G ++ + ++         G I+   G +LGRH GI  +T
Sbjct: 175 RHHGIPTAERPESQDVCFNTTGLRFGEFLEEFFEEGGEPGPILDERGNVLGRHRGIHVFT 234

Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDGLFEDAVVD 322
           IGQRRGLGVA+G P++V  +D   + VIV  R E+L    +    +NW            
Sbjct: 235 IGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEALLHRVVEAAGVNWFA-----PPPSG 289

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382
             +   +IR +    P  +    D + V F + +  V  GQ    Y  D     VL  G 
Sbjct: 290 PVEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQRAVTPGQLLAAYVGD----EVLCSGF 345

Query: 383 ISGSK 387
           I  ++
Sbjct: 346 IMQTE 350


>gi|265764899|ref|ZP_06093174.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|263254283|gb|EEZ25717.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 364

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246
             R  A   G + ++ K DS  +CF     Y   +K           R        G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
            FY        +LGGGII+ S +
Sbjct: 345 AFYKD----GLLLGGGIITMSDQ 363


>gi|224372387|ref|YP_002606759.1| tRNA-specific 2-thiouridylase MnmA [Nautilia profundicola AmH]
 gi|223589875|gb|ACM93611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nautilia profundicola AmH]
          Length = 341

 Score =  361 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 201/371 (54%), Gaps = 36/371 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V +SGGVDS++   LLK  GYDV+G+ ++++               ++V    R+ 
Sbjct: 3   KRVLVGVSGGVDSAMSVYLLKEQGYDVVGIYMKMHE---------GVNHVENVAKLNRLS 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +   + + D E+ FR  V   F  SY  G TP PC  CN  +KF   +    + G ++
Sbjct: 54  KKLGFEYVIEDVEDEFRKEVYEYFVESYKQGITPNPCAMCNIKIKFGIFMGFLEKYGCEL 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY+R+      DG+    + +  D  +DQSYFLF   ++ L  + FPLG+  K+ +
Sbjct: 114 AATGHYVRN------DGE---FLYQAKDQSKDQSYFLFGIKKKVLPKILFPLGEYTKDEI 164

Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           + LA E+GL + A + +SQDICF+    Y DV+K ++     +G +V+  GQ +G H G 
Sbjct: 165 KKLASEIGLDEFASQKESQDICFI-DNSYIDVLK-LHFNPERKGKVVNKRGQKIGVHKGY 222

Query: 260 INYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDGLFE 317
             YT+GQR+G  +    +P +V+ +D  S+ +IVG ++ LE  +++L+ +N ++ D +  
Sbjct: 223 SFYTVGQRKGFNLFKSHKPQYVIGIDAKSNTLIVGDKKDLEKKQVFLKGVNLFIDDKV-- 280

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 F+C  KIR     VP  V+  +     V+F +   GVA GQACVFY  +    +
Sbjct: 281 ------FECEAKIRYRAPKVPAVVKMESKSKAVVNFHEPVSGVAKGQACVFYEGE----K 330

Query: 377 VLGGGIISGSK 387
           +LGGG I G +
Sbjct: 331 LLGGGWIRGGR 341


>gi|296127476|ref|YP_003634728.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Brachyspira murdochii DSM 12563]
 gi|296019292|gb|ADG72529.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Brachyspira murdochii DSM 12563]
          Length = 352

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 197/368 (53%), Gaps = 27/368 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG---QDVYDARR 78
           ++ V MS GVDS+  A +LK  G +V GVT+ L+N  K +   GSC +    + V + R+
Sbjct: 3   KIAVGMSAGVDSTTTAKILKEKGNEVFGVTMLLWNGDKRAPLSGSCYSPSQLKMVEECRK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
               I + +Y FD  + F+  VI   A SY  G TP PC+ CN  +KF  L     + G 
Sbjct: 63  YAQAIGIDYYAFDVSDMFQKKVIDYVAESYKKGLTPNPCIMCNSQIKFMALFEAIEKQGL 122

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D  ATGHY   +    D+  +R ++ R  +L +DQSYFL+  TQ QL  + FP+ +  
Sbjct: 123 EFDKFATGHYAGIKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQNQLSKIIFPMHENT 179

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
           KE  R +ARE  L++A+KS+SQD    +  + FD           EGDI++++  +ILG 
Sbjct: 180 KEDTRKMAREYNLEVAEKSESQDFFAGEYSRLFD--------EDREGDIINIDTNEILGH 231

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H GI +YT+GQR+GLG+A  EPLFVV LD  ++ V VG +    V+ + + ++NW+    
Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFVVSLDSKTNTVYVGNKNHTFVNEVTVYDVNWIA--- 288

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374
             +     F+  VK RS+       V   ++ V  + F +    VA GQ+CV Y  D   
Sbjct: 289 --EPRDKEFEALVKTRSAHKGSMARVIPIEENVINIKFFEPTGIVARGQSCVCYDEDVT- 345

Query: 375 ARVLGGGI 382
              L GG+
Sbjct: 346 ---LCGGV 350


>gi|53711506|ref|YP_097498.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81383903|sp|Q64ZW2|MNMA1_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|52214371|dbj|BAD46964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacteroides fragilis YCH46]
          Length = 364

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++ MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + + H  +D  + F+  +I  F   Y +G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LATGHY+R +   G+       +    D+++DQS+FL+   Q+ L  +  P+G M K 
Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169

Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246
             R  A   G + ++ K DS  +CF     Y   +K           R        G  +
Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +G  +  H G   YTIGQRRGLG+ +   +FV  +   ++ V++   +SLE   ++L+
Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365
           + N +     E  ++      VKIR  +      V    +G +++   +    +A GQA 
Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344

Query: 366 VFYTSDSNEARVLGGGIISGSKR 388
            FY        +LGGGII+ S +
Sbjct: 345 AFYKD----GLLLGGGIITMSDQ 363


>gi|328953724|ref|YP_004371058.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM
           11109]
 gi|328454048|gb|AEB09877.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM
           11109]
          Length = 351

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 181/365 (49%), Gaps = 28/365 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV VA+SGG+DS+V AALL   G++V GV L L                 D+     +C 
Sbjct: 7   RVAVALSGGLDSTVAAALLLNQGFEVQGVHLTL------------TEKSADISGIESLCQ 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++++  D    F+  +I  FA+ Y  G TP PCV CN  +KF  L    R  G D L
Sbjct: 55  FLGIAYFQLDLRREFKARIIADFAAQYRLGLTPNPCVRCNELIKFGFLFQAVRSQGFDYL 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R              + + +D +++QSYFL   +   L  +  PLG + K  VR
Sbjct: 115 ATGHYARVEAAP----NGMMGLWQGVDPDKEQSYFLHRLSPDCLPAVLLPLGRLTKSQVR 170

Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259
           + +   GL       +SQ++CF+  G Y D ++ ++  G+   G IV+  G++LG H G+
Sbjct: 171 EKSLAWGLAQYLPNRESQELCFIPDGDYIDFMRNMDVTGLDRPGPIVNRRGEVLGTHRGV 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GLG+    P +V+ +    +R++VG +  L    + + +INW     F   
Sbjct: 231 EHYTVGQRQGLGLPGPAPSYVLEIIPAGNRLVVGCKADLLADELLVEDINW-----FIPV 285

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
            ++  +  VKIR         +   D   V V F+  +  +  GQA VFY  +    R+L
Sbjct: 286 PLEPLRARVKIRYRHPGATAIILPLDRRRVRVRFDLPQTAITPGQAAVFYQDN----RLL 341

Query: 379 GGGII 383
           GGG I
Sbjct: 342 GGGWI 346


>gi|256092379|ref|XP_002581921.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Schistosoma mansoni]
 gi|238668268|emb|CAZ38161.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt
           ransferase,putative [Schistosoma mansoni]
          Length = 313

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 157/311 (50%), Positives = 211/311 (67%), Gaps = 8/311 (2%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKA 60
           + +   +  L  DK P   + VVAMSGGVDSSV A LL R GY VIGVTLQLY  +    
Sbjct: 1   MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSN 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +++KG CCAGQD+YDA+RV +     HY+ +YEE F+  VI  FA +Y  G+TP+PC+ C
Sbjct: 61  TRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKC 120

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           N+TVKF DLL VTR LGADVL TGHY+R     G+       +CR +D  +DQSYFLFAT
Sbjct: 121 NQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGE-----VKLCRGIDKSKDQSYFLFAT 175

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           T++QL  LRFPLG   K +VR LAR   L I++K DSQDICFV +  Y   + ++     
Sbjct: 176 TKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSI 234

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
            +G IV +NG++LG HNGI+N+T+GQR+GLG+A  EPL+VV ++  ++ ++VGP  +L  
Sbjct: 235 QKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQ 294

Query: 301 HRIYLREINWL 311
            +I ++E+NWL
Sbjct: 295 RKILVKELNWL 305


>gi|256380038|ref|YP_003103698.1| tRNA-specific 2-thiouridylase MnmA [Actinosynnema mirum DSM 43827]
 gi|255924341|gb|ACU39852.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Actinosynnema mirum DSM 43827]
          Length = 362

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 185/378 (48%), Gaps = 30/378 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L +++  + R GS  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F + YAAG TP PC+ CN  +KF  LL     LG 
Sbjct: 60  AADVLGIPFYVWDFAERFTEDVVEDFVAEYAAGRTPNPCLRCNERIKFEALLDKAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R  +  G        + R  D  +DQSY L + T++QL    FPLG   K 
Sbjct: 120 DAVCTGHYARLDVVDGS-----VELRRSADEGKDQSYVLASLTREQLAHAMFPLGGSTKV 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHN 257
            VR  A   GL +A K DS DICF+  G     + +     A  G +V    G +LG+H 
Sbjct: 175 EVRAEAARRGLSVAAKPDSHDICFIPDGDTQGFLTKRLGQRA--GVLVDDETGAVLGQHV 232

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL----REIN 309
           G+  +T+GQR+GLG+      G P +V+ L+  S  V VG  E L V  I        ++
Sbjct: 233 GVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVRVGAAEKLAVREIVAVRPVSRVD 292

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
           W              +C  ++R+     P   +   + + V   +   GVA GQA   Y 
Sbjct: 293 W----------SGPVECVAQVRAHGGTAPAIAELVGEELVVRLREPLSGVAPGQAVAVYR 342

Query: 370 SD-SNEARVLGGGIISGS 386
            D      VL    I  +
Sbjct: 343 EDPEGGDLVLASATIERT 360


>gi|190348444|gb|EDK40897.2| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 412

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 186/387 (48%), Gaps = 33/387 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +   D  +VVAMS GVDSSV AA+  +   +V G+ +  ++       + + C   D  
Sbjct: 42  QEPDSDDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYMANWS-------QTAKCTEADWK 94

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           D +R+C+ I +     ++E  + + V  P  S+Y  G TP P V CN+ VKF  ++    
Sbjct: 95  DVQRICEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLG 154

Query: 134 RQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             LG D    L TGHY R    + ++  +R  + R +   +DQSY+L       L ++  
Sbjct: 155 AMLGKDRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLM 211

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL 248
           P+G M K  VR +A+++ L +A K DSQ +CFV  ++  +   +          G+IV  
Sbjct: 212 PIGHMTKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIE--PNPGNIVTE 269

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEV 300
           +G+I G+H G+ + TIGQ+ G+ +  G P      FV    + ++ +++   G   SL  
Sbjct: 270 DGKIWGQHQGLWHATIGQKSGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFN 329

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359
            ++      W+ +     A    +   ++ RS Q P+ V  +    D + ++ E+    +
Sbjct: 330 SKVLAENWTWIDEKNVAKAADMPYH--IQYRSLQFPLKVKAIVPKADSLEIELEEKARAM 387

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
           A GQ  V Y      ++VLG G+I  +
Sbjct: 388 APGQNLVLYKD----SQVLGSGVIKRA 410


>gi|237720472|ref|ZP_04550953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|293368878|ref|ZP_06615481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|229450223|gb|EEO56014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|292636027|gb|EFF54516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 385

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/405 (27%), Positives = 177/405 (43%), Gaps = 59/405 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC+ CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCILCNNYLKWPLLAKIADEMGV 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  LC +  P+GD+ K 
Sbjct: 115 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA-------------------- 237
             R  A E G   +A K DS  +CF     Y   +K   A                    
Sbjct: 170 EARVWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLKNWLAQNNEALAEEEQMMGENQALV 228

Query: 238 --------------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283
                              G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +
Sbjct: 229 GDWQVLVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 288

Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
           +   + V++    +LE   ++L++ N +     ++  +      VKIR  +      +  
Sbjct: 289 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 344

Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             D  ++V   +    +A GQA  FY        +LGGGII  ++
Sbjct: 345 TPDHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 385


>gi|300933640|ref|ZP_07148896.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium resistens DSM
           45100]
          Length = 374

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 185/388 (47%), Gaps = 38/388 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINV 85
           MSGGVDS+V A+     G+DV+GV L L  S +A       CC+ +D  DARRV D + +
Sbjct: 1   MSGGVDSAVAASRALEAGHDVVGVHLALSQSPEAVRAGSRGCCSLEDSADARRVADKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SY+ GETP PC+ CN  +KF  LL  +  LG D +ATGH
Sbjct: 61  PFYVWDFSDRFKADVIDNFVDSYSIGETPNPCLRCNEKIKFEALLDRSIALGFDAVATGH 120

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
           Y R    V         + R +D  +DQSY L   T +QL    FP+GD  K  +R+ A 
Sbjct: 121 YARLHDGV---------LRRGIDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPDIREEAA 171

Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265
           E G  +A K DS DICF+  G+    +   N      G +    G+ L  H+G+  +TIG
Sbjct: 172 ENGFGVASKPDSHDICFIPDGRTQAFLG--NKIGLRPGMVQSTGGEKLADHDGVYGFTIG 229

Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           QR+GLG+      G+P +V  +D  +  V VG R  L +  I    +      L  +   
Sbjct: 230 QRKGLGLPREGLDGKPRYVTDIDAATGTVTVGHRRDLRIGGIVADRL----KRLDPEVHG 285

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF--------EKSEV----------GVASGQ 363
             F C V++R+    VP   +  DD   V          E              GVA GQ
Sbjct: 286 REFDCEVQVRAHGGVVPAVARLVDDPEPVTPAGRNKHEDEAPFRLELELAEPLEGVARGQ 345

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391
           A V Y  D     +LG G I  +   D 
Sbjct: 346 AAVVYRPDEAGDILLGSGTIRATTPWDR 373


>gi|300726991|ref|ZP_07060411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bryantii B14]
 gi|299775714|gb|EFI72304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bryantii B14]
          Length = 361

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 167/371 (45%), Gaps = 23/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD ++ V +SGGVDSSVV       G       +++       + +  C + +D+  A  
Sbjct: 8   KDKKIAVLLSGGVDSSVVVYEFASHGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + N V         +G TP P V CNR +KF            
Sbjct: 65  VAARFGCKLQVIDCHKEYWNQVTKYTMDKVKSGFTPNPDVMCNRLIKFGAF-DEKMGHDY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++ +  G     ++ +    D  +DQ+ FL    Q QL    FP+G   K+
Sbjct: 124 DLIATGHYAQTEIIDG-----KKWLVTSPDPVKDQTDFLAQIYQWQLKKAIFPIGHHIKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            +R++A    L  A + DSQ ICF+    Y + V+R       +G+++    G+ +G H 
Sbjct: 179 EIREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGE--KKGNVIEFETGKKIGEHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FVV  D   + + V               + + ++L +G
Sbjct: 237 GLWFHTIGQRKGLGLGGG-PWFVVKKDIEKNILYVSHGYDPETAYKQDFKIHDFDFLTEG 295

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E       +   KIR + +  P  V+ N DG   +  ++   GVA GQ CV Y  D  
Sbjct: 296 ITELPA----RVTFKIRHTPEYHPASVEVNGDGTFTIHSDEKIHGVAPGQFCVIY--DEQ 349

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 350 HHRCYGSGEIT 360


>gi|255728973|ref|XP_002549412.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404]
 gi|240133728|gb|EER33284.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404]
          Length = 426

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 111/399 (27%), Positives = 185/399 (46%), Gaps = 37/399 (9%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKAS 61
           ++E    + +     P+D  ++VAMS GVDSSV AAL     Y +V G+ +  ++     
Sbjct: 49  INELPENSYIQPTPGPED-HIIVAMSSGVDSSVCAALF--QNYKNVHGIYMANWS----- 100

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             + + C  +D  D ++VC  +N+     ++E  + N V +P    Y  G TP P + CN
Sbjct: 101 --QNATCTERDWRDVQKVCQDLNIDCERVNFEHEYWNDVFLPMIEKYERGLTPNPDIGCN 158

Query: 122 RTVKFSDLLSVTRQL---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           + VKF  L     Q        L TGHY R   +   +      + R +   +DQSY+L 
Sbjct: 159 KYVKFGKLAEYLEQKYHGKKWWLVTGHYARVMKH---NATGEYHLLRGLSSRKDQSYYLS 215

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRIN 236
           +     L     P+G   K  +R+LA++  L  A K DSQ +CFV      + D +    
Sbjct: 216 SIPASILSKTILPIGHYTKPEIRELAKKFNLHTASKPDSQGLCFVNPNQSNFRDFLNEYI 275

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVI 291
              A  GDIV  +G + G+H G+ + TIGQR  + +  G+P      FV   +   ++++
Sbjct: 276 P--ANPGDIVTEDGTVWGKHKGLWHATIGQRSTVSMPQGDPKYQGVWFVSEKNIEKNQLV 333

Query: 292 VG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDG 347
           +        L    + + ++ W+     ++ V+       +  S   PVPV V +N  D 
Sbjct: 334 IVKGTDNPKLFKQVVEITDLEWI---QPKEKVLAMDNVQFQYHSLTTPVPVKVIKNKGDK 390

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           + ++ EK    +A GQ  + Y  +    +VLGGG+I+ +
Sbjct: 391 LIIELEKPARALAPGQGGILYNGN----QVLGGGMINKT 425


>gi|205814822|sp|B2S125|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 354

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 181/369 (49%), Gaps = 26/369 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + +   ++ +   V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINEH-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++     I+ +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258
           +R +A ++ L   ++ DSQ ICF+ + KY + +K     +  +G+I+    G+ILG HNG
Sbjct: 174 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGEL--KGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +      H+  + + NW+    
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                V+      KIR  +  +   ++   +D + VD E+ + G++ GQ C+FY  D   
Sbjct: 288 ---KPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 -ECLGGAQI 349


>gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH]
 gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia hermsii DAH]
          Length = 357

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 181/369 (49%), Gaps = 26/369 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 4   MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + +   ++ +   V+         G TP P + CN+ +KF        +   D
Sbjct: 63  CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINEH-YD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++     I+ +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 122 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 176

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258
           +R +A ++ L   ++ DSQ ICF+ + KY + +K     +  +G+I+    G+ILG HNG
Sbjct: 177 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGEL--KGNIIEQETGKILGTHNG 234

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +      H+  + + NW+    
Sbjct: 235 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--- 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                V+      KIR  +  +   ++   +D + VD E+ + G++ GQ C+FY  D   
Sbjct: 291 ---KPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 344

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 345 -ECLGGAQI 352


>gi|116515102|ref|YP_802731.1| hypothetical protein BCc_166 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285502|sp|Q057R1|MNMA_BUCCC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116256956|gb|ABJ90638.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 373

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 189/373 (50%), Gaps = 31/373 (8%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           AMSGGVDSSV A LL + GY V G+ ++ ++   ++     C +  D  D ++VC T+N+
Sbjct: 13  AMSGGVDSSVSAWLLLKQGYQVEGLFMKNWDEDDSND---YCSSKIDFNDVKKVCKTLNI 69

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATG 144
             +  ++ E +   V + F   +  G TP P + CN+ +KF+  L  + + L +D  ATG
Sbjct: 70  PLHTINFSEEYWENVFLNFLKEHKKGNTPNPDILCNKIIKFNICLKFSLKYLKSDYFATG 129

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY + +       K+   + R  D ++DQSYFL+    + L  + FPL   KK+ +R +A
Sbjct: 130 HYAKIK-----KTKKNFYLYRAHDKKKDQSYFLYTLKSKILSKIIFPLAYFKKKKIRKIA 184

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
           +++ L +  K DS  ICF+Q  K+   +K+        G I+ ++ + LG H G   YTI
Sbjct: 185 KKIKLSVYKKKDSTGICFIQPKKFNSFLKQYIPQKI--GKILTMSKEFLGLHLGYEFYTI 242

Query: 265 GQRRGLGVAM------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
           GQR+GL +          P +VV  D   + + V        L  +    ++I+++ D +
Sbjct: 243 GQRKGLNIGGKKKKKNAYPWYVVKKDIYLNIIFVVQGLRNPYLLSYGFLTKKIHYINDNI 302

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           F        KC V+I+  Q+P+      + + ++ + V F+K  + V  GQ+ VFY  + 
Sbjct: 303 FYFK----KKCVVQIKYRQEPIICEFFKISKKNNYIKVIFKKPILYVTPGQSAVFYLKN- 357

Query: 373 NEARVLGGGIISG 385
              + LGG II  
Sbjct: 358 ---KCLGGSIIKK 367


>gi|168070921|ref|XP_001786986.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660006|gb|EDQ48200.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 257

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 102/267 (38%), Positives = 147/267 (55%), Gaps = 14/267 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A LLK+ GYDVIG+ ++ ++    +   G+C A  D  D RRVC+ I + 
Sbjct: 1   MSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGNCTAEDDAEDVRRVCEQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +Y  ++E+ + + V   F   Y  G TP P V CNR +KF + L+    LGA  +ATGHY
Sbjct: 58  YYTVNFEKEYYDKVFSYFLDEYKLGRTPNPDVMCNREIKFGEFLTKALNLGAQYVATGHY 117

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            R       +      + R +D  +DQ+YFL A  QQQL    FP+G + K  VR +A E
Sbjct: 118 ARVV-----EQDGVYTLLRGVDSNKDQTYFLNALNQQQLSKAMFPIGHLPKPEVRRIAEE 172

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIG 265
            GL  A K DS  +CF+ +  + + + +     A  G +V +  G++ GRH+G++ YT+G
Sbjct: 173 AGLYTAKKKDSTGVCFIGERNFKEFLSQYLP--AQSGQMVDIATGEVKGRHDGLMYYTLG 230

Query: 266 QRR---GLGVAMGEPLFVVYLDKNSSR 289
           QR+     G   GEP FV   D   + 
Sbjct: 231 QRQGLGIGGSGSGEPWFVADKDLEKNI 257


>gi|227874682|ref|ZP_03992843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844725|gb|EEJ54873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35243]
          Length = 394

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 198/404 (49%), Gaps = 44/404 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ +SGGVDS+V AA L   GYDV    ++L  S    +        Q + DAR+V 
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGENN---PTAQALADARKVA 59

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + +     +V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++    + G
Sbjct: 60  AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
            D +ATGHY R      D       + R   LE+DQSY L     + L    FPL D++ 
Sbjct: 120 FDYVATGHYARL-----DHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K   R  A+  GL +A K DS DICF+  G     ++    G A  G IV  NG ++G+H
Sbjct: 175 KAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGL +      G+P +V  +D + + V VGP E+L+VH+I    INWL 
Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSRNVVTVGPLETLDVHQIRCGRINWLV 293

Query: 313 DGLF------------EDAVVDGFK----CFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354
           +  F             +A  +  +      V+ R+   P P   + +D D + V F + 
Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTVIFPET 353

Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393
            +  GVA GQ+ V Y  +     V+    I+G++    R D  E
Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393


>gi|120603213|ref|YP_967613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris DP4]
 gi|205816916|sp|A1VFH0|MNMA_DESVV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120563442|gb|ABM29186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris DP4]
          Length = 346

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VAMSGG DS     LLK  G  V G+  +                   V D R +C
Sbjct: 1   MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP----------TGHDPVPDIRAMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V  +V D  E F   V+ PF   Y  G TP PC  CN T+KF  L      +GA  
Sbjct: 51  DRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVH 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R   +     +   ++ R +D  +DQSYFL      +L    FPLG+ +KE+V
Sbjct: 111 LATGHYARLLRHP----RWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAV 166

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R       +     S+SQ+ICFV    Y   +K     +   G IV   G+ +G H G+ 
Sbjct: 167 RGELARRSIVPPLPSESQEICFVPDDDYRAFLKNRRVRLPGPGPIVTTRGRKIGSHAGLW 226

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT GQR+GLG+A  EPL+VV  D  ++ ++VG RE+L        E+N L    +ED  
Sbjct: 227 QYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLL--VPYEDWP 284

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            +     V+IR  Q P+   V   D  +Y  F + +   A GQ    Y     E  VLGG
Sbjct: 285 AE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVYD---MEHHVLGG 338

Query: 381 GII 383
           G+I
Sbjct: 339 GVI 341


>gi|291299863|ref|YP_003511141.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Stackebrandtia nassauensis DSM 44728]
 gi|290569083|gb|ADD42048.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Stackebrandtia nassauensis DSM 44728]
          Length = 359

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 190/368 (51%), Gaps = 23/368 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA    DG+DV GV L L +S   + R G   CC  +D  DARR  D I 
Sbjct: 1   MSGGVDSAVAAARAVADGHDVTGVHLAL-SSNPQTFRSGARGCCTLEDSRDARRAADVIG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  ERFR  V+  F + YAAG TP PC+ CN  +KF+ +L     LG D + TG
Sbjct: 60  IPFYVWDMAERFREDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H+ R    V         + R +DL +DQSY L      QL    FPLGD  K+ VR  A
Sbjct: 120 HHARLADGV---------LRRSVDLGKDQSYVLAVLNAAQLSRAVFPLGDSTKDEVRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263
               L +ADK DS DICF+  G     + +     +  GDIV   +G++LG H+G   +T
Sbjct: 171 ARRDLAVADKPDSHDICFIADGDTQGFLNQRLG--SKTGDIVDAASGEVLGSHSGAHQFT 228

Query: 264 IGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQR GLG+      G+P +V+ +    + V VGPRE+L+VH ++     WL     E  
Sbjct: 229 IGQRHGLGIGRPAADGKPRYVLSITPVDNTVKVGPREALDVHVVHADRPVWLDGVEREGP 288

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               F+C V++R+  +     V  + D +         GVA+GQA V Y  D     VL 
Sbjct: 289 ----FECQVQLRAHGEVHDATVTSDGDTITARLHSPAKGVAAGQALVVYQPDPEGDIVLA 344

Query: 380 GGIISGSK 387
              I+ ++
Sbjct: 345 SATIARTE 352


>gi|307720640|ref|YP_003891780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978733|gb|ADN08768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 341

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 201/365 (55%), Gaps = 33/365 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V MSGGVDS++ + LLK  GY+V G+ ++L++     +             A++  D
Sbjct: 4   KVLVGMSGGVDSTITSLLLKEQGYEVEGLYMKLHSKPGYHEIHQ--------ARAQKAAD 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +V D +E F   V  PF  +YA G+TP PC  CNR +KF +++    ++GA  L
Sbjct: 56  FVGIKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMIKFADEIGAQYL 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHYI++      DG+    +    D  +DQSYFLF   ++ L  L+FPLG+  K+ ++
Sbjct: 116 ATGHYIKT------DGE---YLYAADDDTKDQSYFLFYINREILPRLKFPLGERHKKDIK 166

Query: 202 DLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +LA  + GL+  + +++S +ICFV+   Y D++K     +   G+++   G ++G H G 
Sbjct: 167 ELAASIKGLESFSSQAESSEICFVETT-YTDLLKDYV-KVDQVGEVLDQEGNVVGEHKGY 224

Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           ++YTIG+R+G  V    +P FV+ ++   ++++VG +E L  + + L  +N   D     
Sbjct: 225 MHYTIGKRKGFTVHGAHDPHFVLSINPEKNQIVVGKKEDLACYDVKLNNLNMFDDR---- 280

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                F   VK+R     V   V+  +D  Y+  E+S  GVA GQA VFY  D    +++
Sbjct: 281 ---KEFDTTVKLRYRTKAVKCNVKIENDVAYLKLEESVFGVAVGQAAVFYDDD----KLI 333

Query: 379 GGGII 383
           GGG I
Sbjct: 334 GGGWI 338


>gi|308062619|gb|ADO04507.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Cuz20]
          Length = 342

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        R   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DRVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|317178074|dbj|BAJ55863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F16]
          Length = 342

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 195/367 (53%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + LA      L   +   +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H 
Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D   
Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D     
Sbjct: 284 -----KNGEYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334

Query: 377 VLGGGII 383
           +LGGG+I
Sbjct: 335 LLGGGVI 341


>gi|313203848|ref|YP_004042505.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
 gi|312443164|gb|ADQ79520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
          Length = 346

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 177/370 (47%), Gaps = 30/370 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R+++ MSGG DSSV A LL   GY+VIG+T + +   +             + DA ++
Sbjct: 2   KQRILLGMSGGTDSSVAAILLLEQGYEVIGITFRFWEEGEN----------FHLQDAVKL 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H  +D  E FR  V+  F   Y +G TP PCV CN  +K+  +L    +LG D
Sbjct: 52  AGQLGIQHVTYDAREVFRANVVQYFMDEYLSGRTPFPCVKCNNELKWKLILEEADRLGCD 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GHY+     + +D      +    D E+DQS+FL+  TQ QL  + FPLG   K  
Sbjct: 112 KVAMGHYVN---IIQED--NHYFVTEGKDPEKDQSFFLWGLTQAQLSRIVFPLGQFHKTD 166

Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255
           VR +A   G   +++K DS   CF   G Y   +K+  A        G+ +   G +LG 
Sbjct: 167 VRAMAAVRGYKKVSEKKDSLGACFC-SGDYRPFLKKQLAEPDKYIYPGNFMDEEGNVLGT 225

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           H+G   YT+GQRRGL + +   +FV  +   ++ V++ P  S+      +R++N +   L
Sbjct: 226 HDGFPLYTVGQRRGL-IHLNRKVFVKEIRPETNDVVLAPLRSMYKTEFLIRDVNVVDKSL 284

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
           F       F    +IR  +      V   ++    V+  +    +A GQ  VFY      
Sbjct: 285 FSS----EFDVLCRIRYRKQNTLSRVVFLENRTARVELSEPLESIAPGQTAVFYRD---- 336

Query: 375 ARVLGGGIIS 384
            R+LGGG IS
Sbjct: 337 GRILGGGFIS 346


>gi|28572507|ref|NP_789287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tropheryma whipplei TW08/27]
 gi|81629880|sp|Q83HX5|MNMA_TROW8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28410639|emb|CAD67025.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tropheryma whipplei TW08/27]
          Length = 359

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 140/375 (37%), Positives = 192/375 (51%), Gaps = 27/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+ AMSGGVDS+V AA     G+DV+GV L L  SR AS ++G CC  +D  DA +  
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            TI +  YV+D+ E F+  VI  F S Y+AG TP PC+ CN  +KFS LL     LG D 
Sbjct: 58  QTIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           + TGHY R  L    D      + R     +DQSY L    Q QL    FPLG    K+ 
Sbjct: 118 VCTGHYARVFL----DEDGTYQLHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A E GL ++ K DS D+CF+        + +       +GDI+   GQ +G H G 
Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSSNTGAWLSQRIGR--RDGDIIDDLGQRVGSHTGA 231

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL--REINWLGD 313
             YT+GQR+GL ++     G+P +V+ ++  S+ V+VGPRESL V  +        W   
Sbjct: 232 FAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFTTTGWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                      +C V++R+  DPV       DD + V  ++    VA GQ+   Y     
Sbjct: 290 -----FTSRPIECSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAAIYRG--- 341

Query: 374 EARVLGGGIISGSKR 388
             RVLG  +I  +K+
Sbjct: 342 -TRVLGQLMIDNTKK 355


>gi|297380515|gb|ADI35402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori v225d]
 gi|308064111|gb|ADO05998.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Sat464]
          Length = 342

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 195/367 (53%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + LA      L   +   +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H 
Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D   
Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D     
Sbjct: 284 -----KNGEYFIKARYRSVPTKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334

Query: 377 VLGGGII 383
           +LGGG+I
Sbjct: 335 LLGGGVI 341


>gi|146414139|ref|XP_001483040.1| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 412

 Score =  359 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 186/387 (48%), Gaps = 33/387 (8%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +   D  +VVAMS GVDSSV AA+  +   +V G+ +  ++       + + C   D  
Sbjct: 42  QEPDSDDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYMANWS-------QTAKCTEADWK 94

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           D +R+C+ I +     ++E  + + V  P  S+Y  G TP P V CN+ VKF  ++    
Sbjct: 95  DVQRICEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLG 154

Query: 134 RQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             LG D    L TGHY R    + ++  +R  + R +   +DQSY+L       L ++  
Sbjct: 155 AMLGKDRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLM 211

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL 248
           P+G M K  VR +A+++ L +A K DSQ +CFV  ++  +   +          G+IV  
Sbjct: 212 PIGHMTKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIE--PNPGNIVTE 269

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEV 300
           +G+I G+H G+ + TIGQ+ G+ +  G P      FV    + ++ +++   G   SL  
Sbjct: 270 DGKIWGQHQGLWHATIGQKLGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFN 329

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359
            ++      W+ +     A    +   ++ RS Q P+ V  +    D + ++ E+    +
Sbjct: 330 SKVLAENWTWIDEKNVAKAADMPYH--IQYRSLQFPLKVKAIVPKADSLEIELEEKARAM 387

Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386
           A GQ  V Y      ++VLG G+I  +
Sbjct: 388 APGQNLVLYKD----SQVLGSGVIKRA 410


>gi|17538240|ref|NP_502120.1| hypothetical protein B0035.16 [Caenorhabditis elegans]
 gi|20141962|sp|Q17440|MTU1_CAEEL RecName: Full=Probable mitochondrial tRNA-specific 2-thiouridylase
           1
 gi|13548315|emb|CAA97418.2| C. elegans protein B0035.16, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 375

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 182/376 (48%), Gaps = 24/376 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ MSGGVDS+V A LLK+ G+DVIG+ +  ++     +    C   +D  DAR VCD
Sbjct: 3   RVVIGMSGGVDSAVSAFLLKKRGFDVIGLHMINWD--VQEEGTSHCPRSKDESDARNVCD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            +N+  +  ++ + + N V + F  +Y  G T +P +DCN+++KF     + R+   AD 
Sbjct: 61  RLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADF 120

Query: 141 LATGHYIRSRL----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           +ATGHY  +          D    R +    D  +DQ++FL    Q+QL    FPLG ++
Sbjct: 121 IATGHYATTNFGDFQQNAKDSDEIR-LFSGKDPLKDQTFFLCTVNQEQLKRAMFPLGSLQ 179

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILG 254
           K  V+ +A E G  ++A K +S  ICF+ + K + D +          G I+  NG  +G
Sbjct: 180 KSEVKRIAEEQGFQEVAKKPESMGICFIGKKKRFSDFLDEYIE--PKPGRILLKNGSEIG 237

Query: 255 RHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308
            H+GI  +TIG+R   + L        FV ++  ++  +I         L   R  +   
Sbjct: 238 NHHGIHQFTIGKRINGKYLEARSHLGFFVSHIHSDTGDIIACEGSHHPDLYASRFLINHP 297

Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
            W+     F     + F C  +I+ +  P+P   ++ +  + V    +    A GQ CVF
Sbjct: 298 KWIRTFDPFNRISSNNFLC--RIQRTHPPIPCVAEKQEQFLSVIPRLALRATAPGQMCVF 355

Query: 368 YTSDSNEARVLGGGII 383
           Y     +   LGGG I
Sbjct: 356 YN---TKNECLGGGEI 368


>gi|261838653|gb|ACX98419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 51]
          Length = 342

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 194/367 (52%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++ V   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + LA      L   +   +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H 
Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D   
Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D     
Sbjct: 284 -----KNGEYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334

Query: 377 VLGGGII 383
           +LGGG+I
Sbjct: 335 LLGGGVI 341


>gi|315587224|gb|ADU41605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 35A]
          Length = 342

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|281420586|ref|ZP_06251585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella copri DSM 18205]
 gi|281405359|gb|EFB36039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella copri DSM 18205]
          Length = 360

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 165/371 (44%), Gaps = 24/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV     + G       +++       K +  C + +D+  A  
Sbjct: 8   KDKRIAVLLSGGVDSSVVVWEFAQLGLHPDCFYIKI---GPEEKEEWDCSSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D    + N V         AG TP P V CNR +KF            
Sbjct: 65  VARKYGCKLQVVDCHHEYWNEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHNY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++      D    + +    D  +DQ+ FL      QL    FP+G   K 
Sbjct: 124 DLIATGHYAQTET----DENGDKWLVTSPDPVKDQTDFLAQIESWQLKKAIFPIGHHIKN 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR++A E  L  A + DSQ ICF+ Q  Y D ++R        GD++    G+ +G H 
Sbjct: 180 EVREIAEEEHLINAKRKDSQGICFLGQINYNDYIRRYLGE--KPGDVIEMETGKRIGEHK 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG   G P FV+  D  ++ + V               L + ++L   
Sbjct: 238 GLWFHTIGQRKGLGFGGG-PWFVIKKDVENNILYVSHGYDPQSAYKKDFPLHDFHFLTRE 296

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
                 V   K   KIR + +  P  +++ +DG + +  E++  GVA GQ CV Y  D +
Sbjct: 297 ------VAMQKVTFKIRHTPEYHPATIEKLEDGRWMIHSEEAIHGVAPGQFCVVY--DEH 348

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 349 HHRCYGSGEIT 359


>gi|300871209|ref|YP_003786082.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira pilosicoli 95/1000]
 gi|300688910|gb|ADK31581.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachyspira pilosicoli 95/1000]
          Length = 353

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 200/369 (54%), Gaps = 28/369 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78
           ++ V MS GVDS+  A LLK  G +V GVT+ L++  + +   GSC        V + ++
Sbjct: 3   KIAVGMSAGVDSTTTAKLLKEQGNEVFGVTMLLWDGDERAPLAGSCYGPYQNKVVEECKK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
               I + +Y F+  E F+  VI     SY  G TP PC+ CNR +KF  L     + G 
Sbjct: 63  YAAQIGIDYYAFNVSELFQKKVIDYVKDSYKKGLTPNPCIMCNREIKFMALFDAIEKSGL 122

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D  ATGHY   R    D+ ++R I+ R  +  +DQSYFL+  TQ+QL  + FP+ +M 
Sbjct: 123 TFDKFATGHYAGVRY---DEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFPMYEMT 179

Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
           KE  R LARE  L D+A+K+DSQD    +  + FD          LEG+IVH+   +ILG
Sbjct: 180 KEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFD--------EDLEGNIVHIETNEILG 231

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +HNGI +YT+GQR+GLG+A  EPLF++ LD +++ V VG +    + ++ + +INW+   
Sbjct: 232 KHNGIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTVYVGNKNHTIIDKVTIYDINWIV-- 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
              +     F   VK RS+        V  +D+ + + F +    VA GQ+CV Y  +  
Sbjct: 290 ---NKREKEFTALVKTRSAHKGTMANVVPIDDNRIDIHFLEPTGIVAKGQSCVCYDGEIT 346

Query: 374 EARVLGGGI 382
               L GGI
Sbjct: 347 ----LCGGI 351


>gi|260591395|ref|ZP_05856853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella veroralis F0319]
 gi|260536761|gb|EEX19378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella veroralis F0319]
          Length = 360

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 165/371 (44%), Gaps = 23/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV     R G       +++       K +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEEWDCNSEEDLEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         AG TP P V CNR +KF            
Sbjct: 64  VAHRYGCKLQVIDCHKEYWDQVTSYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G   K 
Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYAKN 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A +  L  A + DSQ ICF+    Y + V+R        GDI+ L  G+ +G H 
Sbjct: 178 EVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQV--GDIIELETGKKIGEHR 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FVV  D   + + V               L + ++L +G
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVVKKDVAQNILYVSHGYDPATTYKKDFPLHDFHFLTEG 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E       K   KIR + +     V++  DG   +   +S  GVA GQ CV Y  D  
Sbjct: 295 IKELPT----KVTFKIRHTPEYHTATVEQLSDGKCLIHSTESIHGVAPGQFCVIY--DEQ 348

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 349 HHRCFGSGEIT 359


>gi|288924750|ref|ZP_06418687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae D17]
 gi|288338537|gb|EFC76886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae D17]
          Length = 353

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 164/371 (44%), Gaps = 25/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L   G       +++       + +  C + +D+  A  
Sbjct: 2   KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D    + + V         AG TP P V CNR +KF            
Sbjct: 59  VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G   K+
Sbjct: 118 DLIATGHYAQTEWIDG-----RKWLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+ Q  Y + ++R        GD++ L  G+ +G H 
Sbjct: 173 EVREIAEREHLVNAKRRDSQGICFLGQINYNEYLRRYLGE--QPGDVIELETGKTIGEHR 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG   G P FVV  D   + + V               + + +     
Sbjct: 231 GLWFHTIGQRKGLGFGGG-PWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFH----- 284

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
               A +D  +   KIR + D +P  V++  +G+Y V  +    GVA GQ CV Y  D  
Sbjct: 285 -VLTAPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQ 341

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 342 HHRCFGSGEIT 352


>gi|46579220|ref|YP_010028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404995|sp|Q72DX2|MNMA_DESVH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46448633|gb|AAS95287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233051|gb|ADP85905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris RCH1]
          Length = 346

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VAMSGG DS     LLK  G  V G+  +                   V D R +C
Sbjct: 1   MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP----------TGHDPVPDIRAMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V  +V D  E F   V+ PF   Y  G TP PC  CN T+KF  L      +GA  
Sbjct: 51  DRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVH 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R   +     +   ++ R +D  +DQSYFL      +L    FPLG+ +KE+V
Sbjct: 111 LATGHYARLLRHP----RWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAV 166

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R       +     S+SQ+ICFV    Y   +K     +   G IV   G+ +G H G+ 
Sbjct: 167 RGELARRSIVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAGLW 226

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT GQR+GLG+A  EPL+VV  D  ++ ++VG RE+L        E+N L    +ED  
Sbjct: 227 QYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLL--VPYEDWP 284

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            +     V+IR  Q P+   V   D  +Y  F + +   A GQ    Y     E  VLGG
Sbjct: 285 AE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVYD---MEHHVLGG 338

Query: 381 GII 383
           G+I
Sbjct: 339 GVI 341


>gi|259506284|ref|ZP_05749186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
 gi|259166064|gb|EEW50618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium efficiens YS-314]
          Length = 359

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 191/369 (51%), Gaps = 19/369 (5%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85
           MSGGVDS+V A+     G++V+GV L L    ++ +     CC+ +D  DARRVCD + +
Sbjct: 1   MSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRVCDKLGI 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
             YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF+ LL     LG D + TGH
Sbjct: 61  PFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFDAVVTGH 120

Query: 146 YIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           Y R ++   G DG     + R +D+ +DQSY L      ++    FP+GD  K  +R+ A
Sbjct: 121 YARLTQPADGGDG----YLRRGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKPEIREEA 176

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              G  +A K DS DICF+  G     + +        G IV   G  L  H G+  +TI
Sbjct: 177 AASGFSVAKKPDSYDICFIPDGNTQAFLGKHIGL--RPGMIVDREGTTLREHAGVHEFTI 234

Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           GQR+GL +    A G P +V  +D  +  V VG RE LEV  I+   + +L       A+
Sbjct: 235 GQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFLH-----PAM 289

Query: 321 VDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                C V++R+    V     + R  D + +D  +S  GVA GQA V Y  D     VL
Sbjct: 290 DGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLPDPEGDIVL 349

Query: 379 GGGIISGSK 387
           G G I G++
Sbjct: 350 GSGTICGTE 358


>gi|219559055|ref|ZP_03538131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis T17]
          Length = 396

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 133/358 (37%), Positives = 186/358 (51%), Gaps = 22/358 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D+ E+F+  VI  F SSYA GETP PCV CN+ +KF+ L +    LG D +ATG
Sbjct: 60  IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY R              + R +D ++DQSY L   T QQL    FP+GD  K  +R  A
Sbjct: 120 HYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
              GL +A+K DS DICF+  G     +          G +V  +G +L  H+G+  +TI
Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDGVHGFTI 228

Query: 265 GQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
           GQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +        A 
Sbjct: 229 GQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA----AP 284

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                C V++R+  + V    +   D ++V       GVA GQ  V Y  D     VL
Sbjct: 285 SGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVL 342


>gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 368

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 166/377 (44%), Gaps = 25/377 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V + +SGGVDSSV   LL + GYDV    L+++         G C    D    + VC+ 
Sbjct: 1   VALLLSGGVDSSVALNLLVQQGYDVTAFYLKIWL-EDELAHLGHCPWEDDYRVCQEVCEQ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +       +  +++ VI         G TP P + CN  VKF        Q   D +A
Sbjct: 60  AGIPLETVSLQNAYKSRVIAYTVHEAEQGRTPNPDIMCNSRVKFGCFYEAIDQREFDFVA 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           +GHY +    V D       + R  D  +DQSYFL   TQ QL  + FP+G ++K  VRD
Sbjct: 120 SGHYAQ---LVKDTETGSMRLLRAPDPIKDQSYFLCTLTQDQLQRVLFPIGHLQKSQVRD 176

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261
           LA E  L    + DSQ +CF+ + K+ + +          G IV    G ++G+H+G+  
Sbjct: 177 LADEFILPNRLRPDSQGLCFLGKVKFDEFLAVYLG--TRPGPIVDAGTGDVVGQHHGVWY 234

Query: 262 YTIGQRRGLG------VAMGEPLFVVYLDKNSSRVIVGP--RESLEV---HRIYLREINW 310
           +T+GQR+G+G           P +VV  D     V       E +         +  I+W
Sbjct: 235 HTVGQRKGIGRVLDPLATSRGPWYVVAKDPGKDVVYCSNQYDEDIFTASRSEFAVENIHW 294

Query: 311 LGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVF 367
           +      + +  DG +  +KIR   D V   ++  +      V  +  + G+A GQ  VF
Sbjct: 295 IAGQAPPNLLKGDGGRFVMKIRHGPDLVKGTLRLTNTAGEGDVKLDSKDGGLAPGQYVVF 354

Query: 368 YTSDSNEARVLGGGIIS 384
           Y  +      LG G+IS
Sbjct: 355 YKDE----ECLGAGVIS 367


>gi|10190804|emb|CAB65878.1| EG:BACR7A4.8 [Drosophila melanogaster]
          Length = 371

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 99/361 (27%), Positives = 162/361 (44%), Gaps = 21/361 (5%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAEQGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + LG D +ATGHY R+ 
Sbjct: 71  YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130

Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           L    +G        +  P D  +DQ++FL   +++ L    FPLGD +K  V+DLA+++
Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKI 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           G   +A K +S  ICFV +  + D ++      +  G  + ++ G ++G H GI  +T+G
Sbjct: 191 GFQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKRGPFLDIDSGAVVGHHEGIHQWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE-DAVV 321
           QR  L   + +P FV   +  S+ + V       +L    I +   NWL     +  +  
Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQILSDT 307

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +C  + + ++  V   +  +  +   V+ +     +  GQ  VFY         LG 
Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDD----TACLGS 363

Query: 381 G 381
            
Sbjct: 364 A 364


>gi|299147036|ref|ZP_07040103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|298514921|gb|EFI38803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 384

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 111/405 (27%), Positives = 176/405 (43%), Gaps = 59/405 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFNKQIIDYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  LC +  P+G++ K 
Sbjct: 114 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGNITKV 168

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA-------------------- 237
             R  A E G   +A K DS  +CF     Y   +K   A                    
Sbjct: 169 EARAWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLKNWLAQNSEALAEEEQMMGENQALV 227

Query: 238 --------------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283
                              G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +
Sbjct: 228 GDWQALVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 287

Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
           +   + V++    +LE   ++L++ N +     ++  +      VKIR  +      +  
Sbjct: 288 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 343

Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             D  ++V   +    +A GQA  FY        +LGGGII  ++
Sbjct: 344 TPDHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 384


>gi|28493382|ref|NP_787543.1| tRNA-specific 2-thiouridylase MnmA [Tropheryma whipplei str. Twist]
 gi|81436231|sp|Q820Y1|MNMA_TROWT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28476423|gb|AAO44512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tropheryma whipplei str. Twist]
          Length = 359

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 139/375 (37%), Positives = 191/375 (50%), Gaps = 27/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+ AMSGGVDS+V AA     G+DV+GV L L  SR AS ++G CC  +D  DA +  
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I +  YV+D+ E F+  VI  F S Y+AG TP PC+ CN  +KFS LL     LG D 
Sbjct: 58  QAIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199
           + TGHY R  L    D      + R     +DQSY L    Q QL    FPLG    K+ 
Sbjct: 118 VCTGHYARVFL----DEDGTYQLHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR  A E GL ++ K DS D+CF+        + +       +GDI+   GQ +G H G 
Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSSNTGAWLSQRIGR--RDGDIIDDLGQRVGSHTGA 231

Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL--REINWLGD 313
             YT+GQR+GL ++     G+P +V+ ++  S+ V+VGPRESL V  +        W   
Sbjct: 232 FAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFTTTGWC-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                      +C V++R+  DPV       DD + V  ++    VA GQ+   Y     
Sbjct: 290 -----FTSRPIECSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAAIYRG--- 341

Query: 374 EARVLGGGIISGSKR 388
             RVLG  +I  +K+
Sbjct: 342 -TRVLGQLMIDNTKK 355


>gi|217033651|ref|ZP_03439079.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10]
 gi|216943997|gb|EEC23431.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10]
          Length = 342

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P    V   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPTKAHVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|188528124|ref|YP_001910811.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Shi470]
 gi|229486342|sp|B2UV99|MNMA_HELPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188144364|gb|ACD48781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori Shi470]
          Length = 342

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 194/367 (52%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + LA      L   +   +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H 
Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D   
Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   +  +K R    P   FV   D+ + V+FE+   GVA GQA V Y  D     
Sbjct: 284 -----KNGEYSIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334

Query: 377 VLGGGII 383
           +LGGG+I
Sbjct: 335 LLGGGVI 341


>gi|152992636|ref|YP_001358357.1| tRNA-specific 2-thiouridylase MnmA [Sulfurovum sp. NBC37-1]
 gi|205828996|sp|A6Q941|MNMA_SULNB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151424497|dbj|BAF72000.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sulfurovum sp. NBC37-1]
          Length = 340

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 191/367 (52%), Gaps = 33/367 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGGVDS+V A LL+++GY+V GV ++L++               +    ++V
Sbjct: 3   KGKVLVGLSGGVDSTVTAVLLQKEGYEVEGVYMRLHDKP--------GYHEDNWGKVQKV 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +  D  E F   V   F  SY  G TP PCV CNRT+KF  ++     LG +
Sbjct: 55  ADYLRIKVHFHDLSEAFNANVYEYFVESYKKGLTPNPCVMCNRTIKFGKMVEFADTLGIE 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY++       DG     +    D  +DQSYFL    ++ L  L FPLG   K+ 
Sbjct: 115 FVATGHYLQC------DGN---YIYAAEDAGKDQSYFLSEVKKEVLPRLLFPLGTWIKDD 165

Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           V+  A  + +  + A +++S +ICFV+   Y +V+ +    I + G+ V   G ++G H 
Sbjct: 166 VKAYAANIDVLKEFATQAESSEICFVENS-YDEVLAKHM-NIDMPGETVDTQGNVVGTHK 223

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G ++YTIG+RRG  V    +P FV+ +   S++++VG RE LE +   +++IN     LF
Sbjct: 224 GYMHYTIGKRRGFFVNGAHDPHFVIDIKPESNQIVVGTREKLEENAFEVKQIN-----LF 278

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ED V   F C VK+R     VP  ++   +   V   +   G+A  Q   FY       R
Sbjct: 279 EDLV--EFDCEVKVRYRTRAVPCHIKIEGERATVVLTEPVFGLAKEQVAAFYDG----RR 332

Query: 377 VLGGGII 383
           +LGGG+I
Sbjct: 333 LLGGGVI 339


>gi|4155868|gb|AAD06840.1| putative TRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           [Helicobacter pylori J99]
          Length = 360

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 201/381 (52%), Gaps = 31/381 (8%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 6   ARLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-- 62

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                 + +A++ C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF
Sbjct: 63  ------IKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKF 116

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L    +LG + +ATGHY R +        +   +   +D  +DQSYFL+A   + + 
Sbjct: 117 GLALDHALKLGCEKIATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIA 171

Query: 187 DLRFPLGDMKKESVRDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            L FPLGD+ K+ ++ LA      L   +   +SQ+ICFV++  Y D +K+    +  EG
Sbjct: 172 KLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEG 229

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
            + +L G+++G H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H 
Sbjct: 230 VVKNLQGEVIGTHKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHS 289

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           +  +  +   D           + F+K R    P   FV   D  + V+F++   GVA G
Sbjct: 290 LKAKNKSLTKDF-------KDGEYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKG 342

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA V Y  D     +LGGG+I
Sbjct: 343 QALVVYKDDI----LLGGGVI 359


>gi|269977689|ref|ZP_06184653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris 28-1]
 gi|269934117|gb|EEZ90687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris 28-1]
          Length = 394

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 134/404 (33%), Positives = 193/404 (47%), Gaps = 44/404 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ +SGGVDS+V AA L   GYDV    ++L  S    +        Q + DAR+V 
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGE---DNPTAQALADARKVA 59

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + +     +V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++    + G
Sbjct: 60  AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
            D +ATGHY        D       + R   LE+DQSY L     + L    FPL D++ 
Sbjct: 120 FDYVATGHYA-----CLDHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K   R  A+  GL +A K DS DICF+  G     ++    G A  G IV  NG ++G+H
Sbjct: 175 KAETRSEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGL +      G+P +V  +D N + V VGP E+L+VH+I    INWL 
Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGRINWLV 293

Query: 313 DG----------------LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354
           +                    +         V+ R+   P P   + +D D + V F + 
Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETEMPLTVQFRAHSHPEPATFKIDDQDRLTVIFPET 353

Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393
            +  GVA GQ+ V Y  +     V+    I+G++    R D  E
Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393


>gi|306817970|ref|ZP_07451707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35239]
 gi|304649238|gb|EFM46526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35239]
          Length = 394

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 197/404 (48%), Gaps = 44/404 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ +SGGVDS+V AA L   GYDV    ++L  S    +        Q + DAR+V 
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGE---DNPTAQALADARKVA 59

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + +     +V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++    + G
Sbjct: 60  AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
            D +ATGHY        D       + R   LE+DQSY L     + L    FPL D++ 
Sbjct: 120 FDYVATGHYA-----CLDHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K   R  A+  GL +A K DS DICF+  G     ++    G A  G IV  NG ++G+H
Sbjct: 175 KAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGL +      G+P +V  +D N + V VGP E+L+VH+I    INWL 
Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGRINWLV 293

Query: 313 DGLF------------EDAVVDGFK----CFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354
           +  F             +A  +  +      V+ R+   P P   + +D D + V F + 
Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTVIFPET 353

Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393
            +  GVA GQ+ V Y  +     V+    I+G++    R D  E
Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393


>gi|154496175|ref|ZP_02034871.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC
           29799]
 gi|150274730|gb|EDN01794.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC
           29799]
          Length = 342

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 186/368 (50%), Gaps = 27/368 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDS+V A LL RD Y+V G+ L +               G    DA  V   +
Sbjct: 1   MLGLSGGVDSAVAAQLLSRD-YEVHGLYLDI------------GLGGTGQADAAAVAHRL 47

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++  +  D  +   N V  PFA+ Y AG TPLPC  CN TVKF  LL++  ++GA+ +AT
Sbjct: 48  DIPFHTADIRQELENQVCGPFAADYLAGRTPLPCARCNPTVKFPALLALAEEIGAEKVAT 107

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GHY R+ L         R++ R      DQSY L    Q  L  + FPLGD +K +VR +
Sbjct: 108 GHYARTALAPD-----GRVLLRKGLPANDQSYMLSRLPQNILQKVIFPLGDYEKTAVRAM 162

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263
           A +  L +ADK DS +ICF+  G Y   ++     +   GD V  +G++LGRH GI  YT
Sbjct: 163 AGQAELPVADKPDSMEICFIPDGDYAAWLEH-RGTVPPAGDFVDRDGRVLGRHGGIHRYT 221

Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323
           +GQ RGLGV+     +V  +D    RV++     L   R+Y  ++NWL      D + + 
Sbjct: 222 LGQGRGLGVSGPHKYYVTEIDPAHDRVVLSDGSDLMARRVYCADMNWLSV----DGLPEP 277

Query: 324 FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +  V++R S+  +    + + + V ++          GQ  V Y  D   A     G I
Sbjct: 278 LEVTVRLRHSKTELAAVARADGENVVLEMLDPARAPTPGQLAVLYQGDIVAA----SGWI 333

Query: 384 SGSKRSDA 391
           +G++R+ A
Sbjct: 334 TGAERTAA 341


>gi|329954114|ref|ZP_08295209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328528091|gb|EGF55071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 350

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 23/356 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A  L+  GY+V GVT + Y +             + + DAR
Sbjct: 2   NSKERVLLGMSGGTDSSVTAMKLQEAGYEVTGVTFRFYEAD---------GKAEYLEDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + D + + H ++D  + FR  +I  F   Y AG TP+PC+ CN  +K+  L  +  + G
Sbjct: 53  TLADRLGIEHIIYDARKLFRERIIRYFIDEYLAGHTPVPCILCNNELKWKLLAEIADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L           +    D ++DQ++FL+   Q  L  +  P+GDM K
Sbjct: 113 IYWISTGHYVRKLLLEDT-----YYIAPAADRDKDQTFFLWGLKQDILKRMLLPMGDMTK 167

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
           E  R  A   G   +A K DS  +CF     Y   +KR      L G    +   G+ILG
Sbjct: 168 EEARAYAAGRGFMRVATKKDSIGVCFCPL-DYRSFLKREVPAEQLPGRGHFLDEKGEILG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ +   +FV  +  +++ V++ P  SL  + +YL++ N +   
Sbjct: 227 WHEGYPFYTIGQRRGLGLHLNRAVFVKEIKMDTNEVVLAPLASLYKNEMYLKDWNLIS-- 284

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369
                V+      VKIR  +      V    DG + V   +    +A GQA  FY 
Sbjct: 285 --THRVLGAETVIVKIRYRKQANRCMVTLEGDGHLRVSLLEPLESIAPGQAAAFYD 338


>gi|317052362|ref|YP_004113478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurispirillum indicum S5]
 gi|316947446|gb|ADU66922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurispirillum indicum S5]
          Length = 345

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 186/367 (50%), Gaps = 32/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+VAMSGGVDSS+   LL   GY V G  ++L+ + +           Q++    RV 
Sbjct: 6   KKVLVAMSGGVDSSMTTKLLLEQGYPVEGCYMKLHGNEQ--------MHEQNIARVERVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
              N+  +V D ++ F  +V  PF   Y+ G+TP PC  CNR +KF  L    R+L    
Sbjct: 58  RYFNIPWHVLDRQDLFHQSVYQPFIDIYSQGQTPNPCTFCNRLIKFGTLFEFARELDCHH 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY++       DG+         D  +DQSYFLF    + +  L FPLG  +K  V
Sbjct: 118 LATGHYVKC------DGQYIYQ---GDDPGKDQSYFLFNIEPRIIPHLLFPLGSWRKSDV 168

Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           + +A ++ L   +A + +S +ICFV+   Y DV++     +   G ++  +G ++G H G
Sbjct: 169 KAMAADIPLLASLATQKESSEICFVEDS-YIDVLREHLQ-VDQPGKVLDTSGNVVGSHRG 226

Query: 259 IINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YT+GQR+G  V +    L+V  +   ++ ++VG RE + + R  +R++N     LF 
Sbjct: 227 YMHYTVGQRKGFDVPLSHTALYVKQILPKTNELVVGTREEINLQRFAVRDLN-----LFL 281

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 F C VK+R      P  V     G   ++ E+ E  +A GQA  FY       R
Sbjct: 282 PDPGQEFTCEVKVRYRNPKAPARVLLGAGGSATIELERPEYAIAPGQAAAFYEG----TR 337

Query: 377 VLGGGII 383
           +LGGG I
Sbjct: 338 LLGGGYI 344


>gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 355

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 169/367 (46%), Gaps = 18/367 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++    +       C A +D+  A  + 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIRI---GRDDTDYMDCSAEEDLEMASAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF            D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKIRRGLTPNPDVMCNKLIKFGCF-ERQVGREFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 117 TATGHYATTVLLDG-----KTWLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A   GL  A + DSQ ICF+ +  Y D V+R       EGDI+ L  G+ LG+H G 
Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKINYNDFVRRFLGE--REGDIIELETGKKLGKHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V      E+   +   +R+ +++ D  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDIEGNVIYVSRGYDTELQFGNEFRMRDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +       +   KIR + + +   + R  +G  +  ++   G+A GQ  V Y  DS    
Sbjct: 289 KKEENGAVEVTFKIRHTPEFMKGRLFREPEGYRIVSDEKLQGIAPGQFGVIY--DSASRL 346

Query: 377 VLGGGII 383
            +G G I
Sbjct: 347 CVGSGEI 353


>gi|288799734|ref|ZP_06405193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332982|gb|EFC71461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 357

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 172/376 (45%), Gaps = 25/376 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +++N +D ++ V +SGGVDSSVV   L + G       +++       + +  C + +D+
Sbjct: 1   MNENLQDKKIAVLLSGGVDSSVVLYELVQQGLKPDCFYIKI---GPEQEEEWDCSSEEDL 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  V         V D  + + + V         AG TP P V CNR +KF       
Sbjct: 58  EMATAVAHRYGCKLEVIDCHKEYWDQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFHDK- 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +    D++ATGHY ++ +  G     ++ +    D  +DQ+ FL      QL    FP+G
Sbjct: 117 KGKDYDLIATGHYAQTEIING-----KKWLVTSPDPVKDQTDFLAQIYDWQLKKAIFPIG 171

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
             +K+ VR +A    L  A + DSQ ICF+ +  Y D +++        G+++ L   + 
Sbjct: 172 HFQKDEVRVIAEREHLINAKRKDSQGICFLGKINYNDYIRKYLGENI--GEVLELQTNKR 229

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREIN 309
           +G+H G+  YTIGQR GLG   G P FVV  D N++ + V               + + +
Sbjct: 230 IGQHKGLWFYTIGQRHGLGFGGG-PWFVVKKDVNNNILYVSKGYEPSSAFKSEFGVSDFH 288

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368
           +L +       VD      KIR + +     +++ N++   +  E    GVA GQ CV Y
Sbjct: 289 FLTEE------VDLSNVTFKIRHTPEFHKARMEKINNNEYRLYSECPIHGVAPGQFCVVY 342

Query: 369 TSDSNEARVLGGGIIS 384
             D    R +G G IS
Sbjct: 343 --DEEHHRCIGSGEIS 356


>gi|317181057|dbj|BAJ58843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F32]
          Length = 342

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 194/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P    V   D+ + V+FE+    VA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPTKAHVSLRDEMIEVEFEEPFYAVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|108563707|ref|YP_628023.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori HPAG1]
 gi|107837480|gb|ABF85349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPAG1]
          Length = 353

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 196/369 (53%), Gaps = 32/369 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ 
Sbjct: 11  KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKA 62

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG +
Sbjct: 63  CEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ 
Sbjct: 123 KIATGHYARVKEI-----DKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 177

Query: 200 VRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           ++ LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G 
Sbjct: 178 IKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGT 234

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  +   D 
Sbjct: 235 HKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                     + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D   
Sbjct: 295 -------KDGEYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI-- 345

Query: 375 ARVLGGGII 383
             +LGGG+I
Sbjct: 346 --LLGGGVI 352


>gi|237749831|ref|ZP_04580311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter bilis ATCC 43879]
 gi|229374581|gb|EEO24972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter bilis ATCC 43879]
          Length = 347

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 193/375 (51%), Gaps = 34/375 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +++N K  +V + MSGGVDSS  A LL++ GY+V+G+ L+L++  +             +
Sbjct: 1   MEQNKK--KVALLMSGGVDSSYSAYLLQQQGYEVLGIYLKLHDKEE--------KHAVFI 50

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +  +VC+ + +   + + +E F+ AV   F  SY  GETP PC  CN  +KF   L+  
Sbjct: 51  RNCEKVCEFLGLEFKIIEAKEEFKKAVYNEFIESYKRGETPNPCALCNPLMKFGLALNAA 110

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G + +ATGHY R    +  DG +R  +    D  +DQSYFL+A +Q  +  L FPLG
Sbjct: 111 LGYGCEYIATGHYAR---IISIDGIKR--IQEARDKSKDQSYFLYAISQDAINRLIFPLG 165

Query: 194 DMKKESVRDLAREMGLDI----ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           DM KE V+  A    L I        +SQ+ICFV+   Y D++K+  + +  +G +    
Sbjct: 166 DMLKEEVKPKAFAA-LPILGDLESYKESQEICFVE-TDYIDILKKHVS-VENKGVVRDTQ 222

Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G I+G H G + YTIG+R+G  V    EP FV+ ++   + ++VG +E LE   +     
Sbjct: 223 GNIVGEHKGYMQYTIGKRKGFSVKGAHEPHFVLKINPKDNEIVVGKKEELETFCVTA--- 279

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
             L   L  + +   +K   K+R    P    +   DD +    ++   GVA GQA V Y
Sbjct: 280 --LNKSLPNEFINGEYK--AKVRYRSTPSNATITIQDDKIIATLKEPVYGVAKGQALVIY 335

Query: 369 TSDSNEARVLGGGII 383
             D     VLGGG+I
Sbjct: 336 KDDI----VLGGGVI 346


>gi|210135491|ref|YP_002301930.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori P12]
 gi|210133459|gb|ACJ08450.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Helicobacter pylori P12]
          Length = 362

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 202/381 (53%), Gaps = 31/381 (8%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
            RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 8   ARLRAITFNERIK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-- 64

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                 + +A++ C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF
Sbjct: 65  ------IKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKF 118

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L    +LG + +ATGHY R +        +   +   +D  +DQSYFL+A   + + 
Sbjct: 119 GLALDHALKLGCEKIATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIA 173

Query: 187 DLRFPLGDMKKESVRDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            L FPLGD+ K+ ++ LA      L   +   +SQ+ICFV++  Y D +K+    +  EG
Sbjct: 174 KLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEG 231

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
            + +L G+I+G H G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H 
Sbjct: 232 VVKNLQGEIIGTHKGYMQYTIGKRKGFNVKGALEPHFVVGIDAKKNELIVGKKEDLATHS 291

Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362
           +  +  + + D           + F+K R    P   FV   D+ + V FE+   GVA G
Sbjct: 292 LKAKNKSLMKDF-------KSGEYFIKARYRSVPAKAFVSLRDEVIEVGFEEPFYGVAKG 344

Query: 363 QACVFYTSDSNEARVLGGGII 383
           QA V Y  D     +LGGG+I
Sbjct: 345 QALVVYKDDI----LLGGGVI 361


>gi|203284580|ref|YP_002222320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia duttonii Ly]
 gi|229486337|sp|B5RMM8|MNMA_BORDL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|201084023|gb|ACH93614.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia duttonii Ly]
          Length = 354

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 180/372 (48%), Gaps = 26/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ + +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + + +E + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++      + +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258
           +R +A E+ L   ++ DSQ ICF+ + KY + +K     +  +G+I+    G+ILG HNG
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGEL--KGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +          + + NW+   L
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWINKPL 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
             D          KIR  +  +   ++   D  + V+ E+ + G++ GQ C+FY  D   
Sbjct: 291 KND------NLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKED--- 341

Query: 375 ARVLGGGIISGS 386
              LGG  I  +
Sbjct: 342 -ECLGGAKILKT 352


>gi|294672865|ref|YP_003573481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella ruminicola 23]
 gi|294474344|gb|ADE83733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella ruminicola 23]
          Length = 359

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 161/374 (43%), Gaps = 24/374 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ ++ R+ V +SGGVDSSVV     R G       +++       + +  C + +D+  
Sbjct: 4   KDIENKRIAVLLSGGVDSSVVVYEFARMGLHPDCFYIKI---GPEEEEEWDCSSEEDLEM 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V         V D    + + V         AG TP P V CNR +KF       R 
Sbjct: 61  ATAVSHKFGCKLEVIDCHNEYWDQVTKYTMDKVRAGLTPNPDVMCNRLIKFGAF-DEKRG 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D++ATGHY         D    + +C   D  +DQ+ FL      QL    FP+G  
Sbjct: 120 HDYDLIATGHYA----MTETDENGDKWLCTSPDPVKDQTDFLAQIADWQLKKALFPIGHY 175

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
            K+ VR +A    L  A + DSQ ICF+ +  Y D ++R        GD++ L  G+ +G
Sbjct: 176 VKDEVRVIAEREHLVNAKRKDSQGICFLGKINYNDYIRRYLGE--QPGDVIELETGKRIG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWL 311
            H G+  +TIGQR+G+G   G P FVV  D  ++ + V               + + ++L
Sbjct: 234 EHKGLWFHTIGQRKGMGFGGG-PWFVVKKDVANNILYVSHGYDPETAYKADFPVHDFHFL 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
              L         K   KIR + +  P  ++  +     V  +    GVA GQ CV Y  
Sbjct: 293 TKEL------QPTKITFKIRHTPEYHPATLEWTSPSTCMVHSKDKIHGVAPGQFCVVYDK 346

Query: 371 DSNEARVLGGGIIS 384
           D    R LG G I+
Sbjct: 347 D--HHRCLGSGEIT 358


>gi|224436863|ref|ZP_03657852.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter cinaedi CCUG
           18818]
 gi|313143341|ref|ZP_07805534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter cinaedi CCUG 18818]
 gi|313128372|gb|EFR45989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter cinaedi CCUG 18818]
          Length = 346

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 191/371 (51%), Gaps = 32/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V + MSGGVDSS  A LL   GY+VIG+ L+L++  K  K          + +  +V 
Sbjct: 2   KKVALLMSGGVDSSYCAHLLLSQGYEVIGLYLKLHDKEKKHKIY--------IKNCEQVA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  E F+  V   F  SY AG+TP PC  CN  +KF   L    +LG D 
Sbjct: 54  SQLGIRFEVLDLREEFKKNVYDAFVKSYKAGQTPNPCAVCNPLMKFGLGLQKADELGCDF 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +   G      + + + +D  +DQSYFL+A  Q  +  + FPLG   KE V
Sbjct: 114 IATGHYAQIKEING-----IKRIAKALDDTKDQSYFLYALPQSAIDRIIFPLGTFTKEEV 168

Query: 201 RDLAREMGLD----IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  A ++ L     +    +SQ+ICFV+   Y D++K ++  + +EG +   NG+ +G H
Sbjct: 169 KKTALKL-LPFLGTLETYKESQEICFVEDS-YIDILK-LHEKVDMEGIVRDSNGKAVGTH 225

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  V    EP +V  ++   + +IVG +E L +  I    +N      
Sbjct: 226 KGYMHYTIGKRKGFSVFGSHEPHYVKAINPQKNEIIVGTKEELTIDSIQA--LNKSLPQA 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           F+  V D     +K+R   +P+   +    + ++    +S  GVA GQA V Y  D    
Sbjct: 284 FDGGVYD-----IKVRYRSEPLKAEINIQGEYIHAKLLESAYGVAQGQALVLYQDDC--- 335

Query: 376 RVLGGGIISGS 386
            VLGGG+I+ +
Sbjct: 336 -VLGGGVITQA 345


>gi|195564545|ref|XP_002105876.1| GD16539 [Drosophila simulans]
 gi|194203240|gb|EDX16816.1| GD16539 [Drosophila simulans]
          Length = 389

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 163/366 (44%), Gaps = 21/366 (5%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLSERGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + LG D +ATGHY R+ 
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130

Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           L    +G        +  P D  +DQ++FL    ++ L    FPLGD +K  V+DLA+++
Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLAKKI 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           GL  +A K +S  ICFV +  + D ++      +  G  + ++ G ++G H GI  +T+G
Sbjct: 191 GLQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKHGPFLDIDSGAVVGHHEGIHQWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL-GDGLFEDAVV 321
           QR  L   + +P FV   +  S+ + V       +L    I +   NWL        +  
Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIDVDPPNWLCSKSQKILSDT 307

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +C  + + ++  V   +  +  +   V+ +     +  GQ  VFY         LG 
Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDD----TACLGS 363

Query: 381 GIISGS 386
             I  +
Sbjct: 364 ARILSA 369


>gi|224010034|ref|XP_002293975.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220970647|gb|EED88984.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 392

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/395 (29%), Positives = 183/395 (46%), Gaps = 27/395 (6%)

Query: 12  LDLDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +D+ K+  +   V + +SGGVDSSV   LL R  Y+V    L+++   + S   G C   
Sbjct: 1   MDISKDTTRKPTVAMLLSGGVDSSVAMHLLLRQNYNVTAFYLRIWLEDELSH-LGECPWE 59

Query: 71  QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            D+   + VC+    VS       + +R  V+         G TP P + CN  VKF   
Sbjct: 60  DDLQVCQSVCEHAGNVSLETVSLGKEYRERVVQYTIEEAQRGRTPNPDIMCNSRVKFGCF 119

Query: 130 LSVTRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           L    + G   D +A+GHY + +         ++ + R  D  +DQSYFL A TQ+QL  
Sbjct: 120 LEYIEESGMDFDYVASGHYAQLKDDDDTSSISQKRLFRAPDPVKDQSYFLCALTQKQLSK 179

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + FP+G+ +K  VR+LA +  L   ++ DSQ +CF+ + ++ D +          GD+V 
Sbjct: 180 VIFPIGEYQKSEVRELATQFQLPNRNRPDSQGLCFLGKVRFDDFLASYLGD--RPGDVVD 237

Query: 248 -LNGQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRES--- 297
            LNG ++GRHNG+  +T+GQR+G+G  M        P +VV  D+    V V  R     
Sbjct: 238 ALNGDVIGRHNGLWYHTVGQRKGIGKVMFPLATAKGPWYVVAKDQERDIVYVSNRYDEDD 297

Query: 298 --LEVHRIYLREINWLGDGLF----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-- 349
                    + ++ WL          +      +  +KIR     V   +   DDG    
Sbjct: 298 FAQARSEFEVEDVRWLAGEAPMNAHHEKSWHEVRLDMKIRHGPRVVQGTLMLKDDGSVGN 357

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  ++ + G+A GQ  VFY  D+     LG  +IS
Sbjct: 358 IRLDQKDGGLAPGQYVVFYQPDT--LECLGAAVIS 390


>gi|262037400|ref|ZP_06010864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
 gi|261748562|gb|EEY35937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
          Length = 364

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 193/380 (50%), Gaps = 25/380 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +     + +V+V MSGG+DSSV A LLK +GY+VIGVTL+      +     +CC+  D+
Sbjct: 1   MTSEKDNKKVIVGMSGGIDSSVAALLLKNEGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+  C T+ + HY  +  E F+  V+  F   Y  G+TP PC+ C+  VK   L+   
Sbjct: 61  SDAKMTCYTLGIPHYTINVVEEFQKEVMDYFIKMYNEGKTPSPCIICDEKVKIKKLVDFA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   +ATGHY +  +          ++    +  +DQSY L+   +  +    FPL 
Sbjct: 121 DKTGVKYIATGHYSKKSMNN--------LLLWDENNPKDQSYMLYRLDKSVIERFLFPLS 172

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           + +K +VR +A+E G+    K DSQ ICF   G Y   +K++      +G+ +  NG+I+
Sbjct: 173 EYEKPTVRQIAKENGIHTHAKPDSQGICFAPDG-YISFLKKMLGDSVKKGNFIDKNGKII 231

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G H G   YT+GQRRGLG+ +G P F+  +   ++ +++G  E L +  I +    +   
Sbjct: 232 GEHIGYQFYTVGQRRGLGLNLGRPFFISEIRPETNEIVIGDFEELLIDEIEIINYKFH-- 289

Query: 314 GLFEDAVVDGFKCFVKIRSSQ----DPVPVFVQRNDD----GVYVDFEKSEVGVASGQAC 365
             +E A + G +   + R S       + + +++ND+     +Y  FEK     + GQ  
Sbjct: 290 --YEIADLIGKELTARPRFSSKGLKGKLLLKIEKNDELQKQRLYFKFEKKTHENSEGQHI 347

Query: 366 VFYTSDSNEARVLGGGIISG 385
           VFY  +     ++GGG I  
Sbjct: 348 VFYLDN----ELIGGGEIKK 363


>gi|315920804|ref|ZP_07917044.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694679|gb|EFS31514.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 384

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/405 (26%), Positives = 177/405 (43%), Gaps = 59/405 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  LC +  P+GD+ K 
Sbjct: 114 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 168

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVK------------------------ 233
             R  A E G   +A K DS  +CF     Y   ++                        
Sbjct: 169 EARVWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLRNWLAQNSAALAGEEQMMEEDQVLV 227

Query: 234 ----------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283
                     ++       G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +
Sbjct: 228 EDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 287

Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
           +   + V++    +LE   ++L++ N +     ++  +      VKIR  +      +  
Sbjct: 288 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 343

Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             +  ++V   +    +A GQA  FY        +LGGGII  ++
Sbjct: 344 TPNHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 384


>gi|260172511|ref|ZP_05758923.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
          Length = 385

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/405 (26%), Positives = 177/405 (43%), Gaps = 59/405 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  LC +  P+GD+ K 
Sbjct: 115 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVK------------------------ 233
             R  A E G   +A K DS  +CF     Y   ++                        
Sbjct: 170 EARVWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLRNWLAQNSAALAGEEQMMEEDQVLV 228

Query: 234 ----------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283
                     ++       G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +
Sbjct: 229 EDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 288

Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343
           +   + V++    +LE   ++L++ N +     ++  +      VKIR  +      +  
Sbjct: 289 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 344

Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             +  ++V   +    +A GQA  FY        +LGGGII  ++
Sbjct: 345 TPNHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 385


>gi|260947962|ref|XP_002618278.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720]
 gi|238848150|gb|EEQ37614.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720]
          Length = 407

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 112/390 (28%), Positives = 178/390 (45%), Gaps = 41/390 (10%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K  ++  + VAMS GVDSSV AAL       V G+ +  ++       + + C   +  
Sbjct: 39  AKPQQNDEIYVAMSSGVDSSVTAALYASKYPHVKGIYMANWS-------QTAKCTESEWN 91

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           D ++VC  I +     ++E+ +   V +P    Y  G TP P + CN+ +KF  ++    
Sbjct: 92  DVQKVCQQIGIPCERVNFEKEYWADVFMPMIEMYENGLTPNPDLGCNKYIKFGKMIEHLS 151

Query: 134 -----RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                R+     LATGHY R         K    + +  D  +DQSY+L +T  +   ++
Sbjct: 152 NKYSTREKKW-WLATGHYARVET-----AKTGPRLLKAYDANKDQSYYLASTPSEVFKNV 205

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIV 246
             PLG   K  VR LA++ GL  A K DSQ +CFV     K+   +          G+I+
Sbjct: 206 LMPLGHYTKPQVRQLAQDFGLHTASKPDSQGLCFVSPDHSKFRHFLDEFIP--PKPGNII 263

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESL 298
             +G+I G H G+ + TIGQ+ G+ +  G+P      FV     +++ +++   G  E L
Sbjct: 264 TEDGKIWGTHKGLWHATIGQKSGISMPQGDPQYQGVWFVSEKRIDTNELVIVRGGNNEKL 323

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSE 356
               + + +  WLGDG   +         ++ RS Q+PVP+   + ++   +     KSE
Sbjct: 324 FKSILKVCDWEWLGDG---ELAATSDNLHIQFRSLQEPVPIRSLIMKDKGEIDFHLHKSE 380

Query: 357 VGVASGQACVFYTSDSNEARVLGGGI-ISG 385
             +A GQ  V Y       RVLG G  I  
Sbjct: 381 RAMAPGQNVVLYDG----YRVLGSGTLIET 406


>gi|260495095|ref|ZP_05815224.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
 gi|260197538|gb|EEW95056.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
          Length = 343

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 187/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  Y    +          +D+ D ++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQYLEENS----------KDIEDTKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  A+ 
Sbjct: 52  DKLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYS---EIFSKYLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL+I +K DSQ ICF ++G Y + +K       + G+ V  +G ILG H G  
Sbjct: 169 REIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDKIVRGNYVDKDGNILGEHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L    +      E   
Sbjct: 228 LYTMGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVELINYKF----SVEYEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ D +Y  + +     A GQ  V FY        V+G
Sbjct: 284 LENLELLARPRFSSTGFYGKIIKDKDKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|311111740|ref|YP_003982962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia dentocariosa ATCC 17931]
 gi|310943234|gb|ADP39528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia dentocariosa ATCC 17931]
          Length = 403

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 187/398 (46%), Gaps = 42/398 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + +  +V+D+ ERF+  V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCAQLGIPFFVWDFSERFKEDVVDDFIAEYEAGRTPNPCMRCNEKIKFAALLERAVSLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY R      DDG   R + R  D  +DQSY L   T +QL    FPL     K
Sbjct: 120 DAVVTGHYARV--ITNDDGN--RELHRAADWAKDQSYVLGVLTHEQLKHAWFPLATTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   G  +A K DS DICF+ +G     +          G I   +G ++G H 
Sbjct: 176 AEVRAEAERRGFSVAKKPDSYDICFIPEGDTRAWLGEHIQ--MRPGMIKDTSGNVVGEHP 233

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G+P FV+ +   ++ VIVG RE L +  I      W G 
Sbjct: 234 GAQGFTVGQRKGLALGTPAPDGKPRFVLEIRPKTNEVIVGSRELLSIDEIRGIRATWAGI 293

Query: 314 GLFEDA-----------VVDGFKCFVKIRSSQDPVP--VFVQRNDDG-----------VY 349
            + E               + F    ++R+  DPV     ++  +D              
Sbjct: 294 PVPEAEHFLAQEPKLGVRSETFDVTAQVRAHADPVRGTAHLEWAEDTDAETPGKLRVETV 353

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           V       GVA GQ  V Y       RVLG   I+ + 
Sbjct: 354 VRLHDGLFGVAPGQTMVLYQG----TRVLGQSTIARAY 387


>gi|320580644|gb|EFW94866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Pichia angusta DL-1]
          Length = 399

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 112/383 (29%), Positives = 181/383 (47%), Gaps = 24/383 (6%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            NP D  +VV+MS GVDSSV A +  +   +V G+ +  + S  +      C    D  +
Sbjct: 28  PNPNDQ-IVVSMSSGVDSSVAALMYAKQYKNVKGIFMANW-SPDSRGGVSKCTVESDWEE 85

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
            + +CD I +     ++E+ + + V  P    Y  G TP P V CN+ VKF  ++     
Sbjct: 86  VQTICDQIGIPCERVNFEKEYWSDVFEPMLEMYRKGLTPNPDVGCNKYVKFGKMIEHLST 145

Query: 135 --QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                   L TGHY R   +          + R   L +DQSY+L    +  L  +  P+
Sbjct: 146 KFSRDNWWLVTGHYARIMKHRA---TGESHLLRAGFLPKDQSYYLSQMPESVLSKILMPI 202

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251
           G   K  VR+LA+  GL   DK DSQ +CFV   G + D +          GDIV  +G+
Sbjct: 203 GHYTKPEVRELAQRYGLVSKDKRDSQGLCFVSQHGNFKDFLDEFLP--PNPGDIVTADGR 260

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG---PRESLEVHRI 303
           + GRHNG+ + TIGQR G+ +  G+P      ++   + + +++I+     R + E  R+
Sbjct: 261 VWGRHNGLWHGTIGQRSGISLPQGDPEMKGVWYISGKNYDKNQLIISKKTDRAAFEKDRL 320

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363
            + +  W+   L +   +D  +  +++RS + P  +      +      ++   GVA GQ
Sbjct: 321 KVADWQWINSSL-DFGDLDPAELTIQVRSLESPRALRAVVAGNEPEFLLQEKIDGVAPGQ 379

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
             V Y ++    RVLGGGII+ +
Sbjct: 380 NLVLYKNE----RVLGGGIIAEA 398


>gi|195347526|ref|XP_002040303.1| GM19108 [Drosophila sechellia]
 gi|194121731|gb|EDW43774.1| GM19108 [Drosophila sechellia]
          Length = 389

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 21/366 (5%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LL   G+ V+GV ++ ++        G C    D+ DA   C  + V     +
Sbjct: 14  DSAVSAHLLAERGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150
           Y   +  AV   F   Y  G TP P + CNR +KF        + LG D +ATGHY R+ 
Sbjct: 71  YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALKNLGYDAVATGHYARNS 130

Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           L    +G        +  P D  +DQ++FL    ++ L    FPLGD +K  V+DLA+++
Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLAKKI 190

Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265
           GL  +A K +S  ICFV +  + D ++      +  G  + ++ G ++G H GI  +T+G
Sbjct: 191 GLQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKHGPFLDIDSGAVVGHHEGIHQWTVG 248

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL-GDGLFEDAVV 321
           QR  L   + +P FV   +  S+ + V       +L    I +   NWL        +  
Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALFSTHIDVDPPNWLCSKAQKILSDT 307

Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              +C  + + ++  V   +  +  +   V+ +     +  GQ   FY         LG 
Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAAFYDD----TACLGS 363

Query: 381 GIISGS 386
             I  +
Sbjct: 364 ARILSA 369


>gi|261840049|gb|ACX99814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 52]
          Length = 342

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARIKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P    V   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPTKAHVNLRDEVIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|308185086|ref|YP_003929219.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180]
 gi|308061006|gb|ADO02902.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180]
          Length = 342

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + LA      L   +   +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H 
Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D   
Sbjct: 226 GYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAQNKSLMKDF-- 283

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   +  +K R    P   FV   D  + V+F++   GVA GQA V Y  D     
Sbjct: 284 -----KKGEYSIKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYQDDI---- 334

Query: 377 VLGGGII 383
           +LGGG+I
Sbjct: 335 LLGGGVI 341


>gi|307700537|ref|ZP_07637571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris FB024-16]
 gi|307614258|gb|EFN93493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris FB024-16]
          Length = 394

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 135/404 (33%), Positives = 198/404 (49%), Gaps = 44/404 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ +SGGVDS+V AA L   GYDV    ++L  S +  +        Q + DAR+V 
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESGRDEENN---PTAQALADARKVA 59

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + +     +V++  +RF   VI PF  +YA+G TP PCV CNR  KF  ++    + G
Sbjct: 60  AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
            D +ATGHY        D       + R   LE+DQSY L     + L    FPL D++ 
Sbjct: 120 FDYVATGHYA-----CLDHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K   R  A+  GL +A K DS DICF+  G     ++    G A  G IV  NG ++G+H
Sbjct: 175 KAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233

Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
            G   YT+GQRRGL +      G+P +V  +D + + V VGP E+L+VH+I    INWL 
Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSHNVVTVGPLETLDVHQIRCGRINWLV 293

Query: 313 DGLF------------EDAVVDGFK----CFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354
           +  F             +A  +  +      V+ R+   P P   + +D D + V F + 
Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFEIDDQDRLTVIFPET 353

Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393
            +  GVA GQ+ V Y  +     V+    I+G++    R D  E
Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393


>gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 359

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 163/371 (43%), Gaps = 25/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L   G       +++       + +  C + +D+  A  
Sbjct: 8   KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D    + + V         AG TP P V CNR +KF            
Sbjct: 65  VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G   K+
Sbjct: 124 DLIATGHYAQTEWIDG-----RKWLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+ Q  Y + ++R        GD++ L  G+ +G H 
Sbjct: 179 EVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLGE--QPGDVIELETGKTIGEHR 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG   G P FVV  D   + + V               + + +     
Sbjct: 237 GLWFHTIGQRKGLGFGGG-PWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFH----- 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
                 +D  +   KIR + D +P  V++  +G+Y V  +    GVA GQ CV Y  D  
Sbjct: 291 -VLTTPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQ 347

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 348 HHRCFGSGEIT 358


>gi|325189345|emb|CCA23865.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14]
 gi|325189563|emb|CCA24050.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14]
          Length = 439

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 162/395 (41%), Gaps = 39/395 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K++ VV+ MSGGVDSSV A LLK+ G+ V GV ++ ++S      +  C   QD+ D + 
Sbjct: 26  KNLHVVIGMSGGVDSSVAALLLKQQGHKVTGVYMKNWDSSDEVGAQC-CPQDQDLKDVQS 84

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  +++  +  ++   + N V  P    + AG TP P + CNR +KF + +     L A
Sbjct: 85  VCKQLDIPIHTTNFVSSYWNTVFAPCLEGFEAGLTPNPDILCNREIKFKEFIRFADTLHA 144

Query: 139 DVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           DV+ATGHY   +    +        +   +D  +DQ+YFL          + FPLG  +K
Sbjct: 145 DVVATGHYALLKKAKSNGQSNEYHQLYAGLDPLKDQTYFLSQVPGSSFSKVLFPLGSYRK 204

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGRH 256
             VR++A+   L  A K DS  +CF+ + ++   + +        G    ++  + L  H
Sbjct: 205 AEVREIAKSHHLHTALKRDSVGLCFIGKRQFGPFINQYI--TPKYGFYYDVDRLVRLKAH 262

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIY--LREINWL 311
            G  + T+GQR  L   M    F+    K    + V       +L  +  +      NW+
Sbjct: 263 KGFASCTVGQRASL-DGMDAKYFIAGKRKVDGTIFVARGTRHPALFSNYCFLSANNFNWI 321

Query: 312 GDGLF---EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--------------------- 347
                   ++       C  + R  Q P    V    +                      
Sbjct: 322 AGEPPLMKDNEASFSLACQYRARYRQQPGRCVVSLVSEAEAVFESSSFLEIPTGTKQSRQ 381

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            + +D E  +  +  GQ    Y  D       GGG
Sbjct: 382 FLRIDLEFPQRAITPGQTLALYGDD---GLCYGGG 413


>gi|205822484|sp|Q1CRS3|MNMA_HELPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KDGEYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135]
 gi|254811445|sp|A1R0A7|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia turicatae 91E135]
          Length = 354

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 182/372 (48%), Gaps = 26/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV   ++ + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MQIAVLLSGGVDSSVALYIMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDINYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + +   ++ +   V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINEH-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++     I+ +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNDHYILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258
           +R +A+++ L   ++ DSQ ICF+ + KY + +K     +  +G+I+    G+ILG HNG
Sbjct: 174 IRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGEL--KGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +          + + NW+    
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWIN--- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                ++      KIR  +  +   ++   +D + VD E+ + G++ GQ C+FY  D   
Sbjct: 288 ---KPLNNGDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 341

Query: 375 ARVLGGGIISGS 386
              LGG  I  +
Sbjct: 342 -ECLGGAKILKT 352


>gi|317014725|gb|ADU82161.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           Gambia94/24]
          Length = 342

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 197/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    QLG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        R   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DRVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KKGEYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|317013122|gb|ADU83730.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           Lithuania75]
          Length = 342

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGKTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D  + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KDGEYFIKARYRSVPAKAFVSLKDGMIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|254779876|ref|YP_003057982.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori B38]
 gi|254001788|emb|CAX30019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B38]
          Length = 342

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    QLG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALQLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P    V   D+ + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KDGEYFIKARYRSVPAKAHVSLRDEVIEVEFKEPFYGVAKGQALVVYQDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|203288114|ref|YP_002223129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia recurrentis A1]
 gi|229486333|sp|B5RQ24|MNMA_BORRA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|201085334|gb|ACH94908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia recurrentis A1]
          Length = 354

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 179/372 (48%), Gaps = 26/372 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ + +SGGVDSSV    + + GY  I    L+++   + S   G C   +D+     V
Sbjct: 1   MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + + +E + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CKKFNVPYKIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY +      ++      + +  D  +DQSYFL   +++Q+  L FPLGD+ K  
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258
           +R +A E+ L   ++ DSQ ICF+ + KY + +K     +  +G+I+    G+ILG HNG
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGEL--KGNIIEQETGKILGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDGL 315
              +TIGQR+G+ ++ G P FV   D  ++ + +    +          + + NW+    
Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
                +       KIR  +  +   ++   D  + V+ E+ + G++ GQ C+FY  D   
Sbjct: 288 ---KPLKNNNLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKED--- 341

Query: 375 ARVLGGGIISGS 386
              LGG  I  +
Sbjct: 342 -ECLGGAKILKT 352


>gi|256028712|ref|ZP_05442546.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
 gi|289766621|ref|ZP_06525999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289718176|gb|EFD82188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 344

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 23/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  A+ 
Sbjct: 52  NKLEIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  + +   +   +  ++     + +DQSY L+  +  +L  L FPL    K+ +
Sbjct: 112 VATGHY--TSVEYSEIFSKYLLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEI 169

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL+I +K DSQ ICF ++G Y + +K       + G+ V  +G ILG H G  
Sbjct: 170 REIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQ 228

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L  +++ L    +      E   
Sbjct: 229 LYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTNKVELINYKF----SVEYEK 284

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + +N + +Y  + +     A GQ  V FY        V+G
Sbjct: 285 LENLELLARPRFSSTGFFGKLMKNKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 339

Query: 380 GGIIS 384
           GG I 
Sbjct: 340 GGEIK 344


>gi|237741407|ref|ZP_04571888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|229430939|gb|EEO41151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
          Length = 343

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 187/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y  G TP PC+ C+  +KF  L  +  +  A+ 
Sbjct: 52  DKLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY             + ++     + +DQSY L+  +  +L  L FPL D  K+ +
Sbjct: 112 VATGHYTSVEYSK---IFSKYLLKSVHSIIKDQSYMLYRLSSNKLERLIFPLKDYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL+I +K DSQ +CF ++G Y + +K       ++G+ +  +G ILG+H G  
Sbjct: 169 REIALKIGLEIHNKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L           E   
Sbjct: 228 LYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVELIN----SKFSVEYEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ + +Y  + +     A GQ  V FY        V+G
Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|315604614|ref|ZP_07879677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313626|gb|EFU61680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 363

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/377 (37%), Positives = 196/377 (51%), Gaps = 23/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +  +  +     CC+ +D  DA R 
Sbjct: 1   MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPQECRIGSRGCCSIEDAGDAARA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I +  YV+D  + F   VI  F + Y AG TP PCV CN  VKF +L S  R LG D
Sbjct: 61  AQIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELASRARALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            + TGHY         DG     + R  D  +DQSY L     ++L  +  PLG    K 
Sbjct: 121 AVCTGHYAAIV-----DGPSGPELHRGADALKDQSYVLAVMGPEELARVVLPLGQAPSKA 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A  +GL +++K DS DICF+  G     ++      A EG+IV  +G++LGRH G
Sbjct: 176 WVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLG--ASEGEIVTPDGEVLGRHEG 233

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYT+GQR+GLG+      G P +V+     +++V+VGP E L + RI+     WL   
Sbjct: 234 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGPSELLSISRIHATNAVWLASD 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFYTSD 371
              DA  +    FV++R+   P+PV     D+    + V  E    GVA GQ+ V Y   
Sbjct: 294 ---DAGNEPADLFVQLRAHGAPIPVAELVRDEASATIDVVLEDGARGVARGQSMVIYRG- 349

Query: 372 SNEARVLGGGIISGSKR 388
              +RVLG G I  ++R
Sbjct: 350 ---SRVLGEGTIGRTER 363


>gi|205822461|sp|A6W7K7|MNMA_KINRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 365

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 145/377 (38%), Positives = 190/377 (50%), Gaps = 27/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V+GV + L N    + R GS  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  E F   V+  F + YAAG TP PCV CN  +KF+ LL     LG 
Sbjct: 60  AADLLGIPFYVWDLSEDFVEDVVADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           D +ATGHY R     G DG  R  + R  D  +DQSY L      Q+    FPLGD   K
Sbjct: 120 DAVATGHYARV--VTGPDG--RAELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A K DS DICF+  G     +      +   G++V  +G++LG H 
Sbjct: 176 AEVRAEAERRGLPVASKPDSHDICFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHT 233

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQR+GLG+    A G P +V+ ++     V VGP E L V  +   E  W   
Sbjct: 234 GTYGYTVGQRKGLGISRPAADGRPRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW--- 290

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFYT 369
               DA V   +  V++R+  +PVP   +     +D  + V       GVA GQ    Y 
Sbjct: 291 --NADAPVGPVEVHVQVRAHGEPVPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYR 348

Query: 370 SDSNEARVLGGGIISGS 386
                 RVLG   ISG+
Sbjct: 349 G----TRVLGSATISGT 361


>gi|269119363|ref|YP_003307540.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
 gi|268613241|gb|ACZ07609.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
          Length = 353

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 17/365 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGGVDSS  A  LK+ GY+VIG+TL+      +     +CC+  D+ DA+ V
Sbjct: 2   KTKVIVGMSGGVDSSAAALFLKKQGYEVIGITLKHLPDELSENGGKTCCSIDDITDAKNV 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  + + HY  D  E F+  V+  F   Y  G+TP PCV C+  +K   L  +  ++GA+
Sbjct: 62  CSHLEIPHYTIDVSEEFKKEVMDYFIKMYNEGKTPSPCVICDEKIKIKKLAEIADKMGAE 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY    L           +    +  +DQ+Y L+      L  + FPL    K+ 
Sbjct: 122 YIATGHYSGKTLENK--------LIWDRENTKDQTYMLYRLDTGILSRMLFPLSGYNKKE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R++ +E G+ I  K DSQ ICF  +G Y D +K     +  EG     NG +LG+H G 
Sbjct: 174 IREIVKEAGIRIHSKPDSQGICFAPKG-YEDFLKGSKEIVIKEGLFKDKNGNVLGKHKGY 232

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             +T+GQRRGLG+ +G+  F+  +    + +I+G  + L    + +  IN+  +   E+ 
Sbjct: 233 QLFTVGQRRGLGINLGKMYFITDIIPEENLIILGEFQDLMKKSVKV--INYKFNTELEN- 289

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              G K   + R S   +   +   D  VY  F+      A GQ  VFY  D     ++G
Sbjct: 290 -TAGKKITARPRFSSKGLTGEIITKDKEVYFVFDNENAENAEGQHIVFYLDDV----LIG 344

Query: 380 GGIIS 384
           GG I+
Sbjct: 345 GGEIA 349


>gi|302337414|ref|YP_003802620.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634599|gb|ADK80026.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 360

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 187/383 (48%), Gaps = 39/383 (10%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N  +  VV+A+SGGVDSSV A +L R    + G T  + +          CC  + +Y A
Sbjct: 3   NTHNDAVVIALSGGVDSSVAAWMLSRQSGRIFGATHYIQDDSP-------CCNTKTIYRA 55

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----- 131
           R +C  + + + + D    FR +V+ PF  +Y   ETP PCV CN  ++F D        
Sbjct: 56  RVICRDLGIPYRLLDMRSSFRQSVVDPFVETYRRAETPNPCVRCNERLRFGDFYHQVRRL 115

Query: 132 -----VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  R+     +ATGHY R+ +  G        + + +D  +DQSY L+   +  L 
Sbjct: 116 LVEEGALRETERPRIATGHYARTAVVDG-----VSYIRKGVDPSKDQSYMLYRIPRDVLP 170

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN--AGIALEGD 244
            + FPLG+  K+ V ++A    L      +SQDICF   G Y D ++       +   GD
Sbjct: 171 YVCFPLGEYTKKEVVEIALRENLPTKSIKESQDICFA-DGGYIDFLRHRLGTEFVDRPGD 229

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +V  +G+ LG+H G ++YTIGQR+GLG+  G P +V  +D +++RV+V  +      R  
Sbjct: 230 LVDNSGKRLGQHRGYLHYTIGQRQGLGLGDG-PWYVSQIDGDANRVVVARKGEFGTQRFS 288

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASG 362
           L E+ W      +      F+C VKIR +   VP  V+       + V+ E+    V  G
Sbjct: 289 LSEVIW------DLPDAPPFECMVKIRYNSGEVPCRVEGLPESGSLLVELEEPA-SVTPG 341

Query: 363 QACVFYTSDSNEARVLGGGIISG 385
           Q+ VFY  D     V+GGGII  
Sbjct: 342 QSAVFYRDD----LVIGGGIIDR 360


>gi|323359738|ref|YP_004226134.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Microbacterium testaceum StLB037]
 gi|323276109|dbj|BAJ76254.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Microbacterium testaceum StLB037]
          Length = 365

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 147/380 (38%), Positives = 196/380 (51%), Gaps = 23/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +   + R GS  CC  +D  DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSRAG-GTLRAGSRGCCTIEDAMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERFR+ VI  F S Y AG TP PC+ CN  +KF+ LL    +LG 
Sbjct: 60  AADKLGMPFYVWDFSERFRDDVIDDFVSEYRAGRTPNPCMRCNEKIKFAALLERALELGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY         D    R + R  D  +DQSY L   T +QL    FPLG    K
Sbjct: 120 DAVCTGHYATLV-----DTPEGRELHRASDNAKDQSYVLGVLTAEQLAHTYFPLGATPSK 174

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A E GL +A K DS DICF+  G     +   +   A +G+I+  +G ++G H 
Sbjct: 175 ALVRAEAEERGLTVAQKPDSHDICFIPDGDTRGWLA--DKVGAEKGEILDRSGAVVGTHE 232

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQRRGL +      G+P FV+ +   ++ V+VGP+E+L    I      W G 
Sbjct: 233 GAHAFTVGQRRGLQLGVPAPDGKPRFVLEVRPVNNTVVVGPKEALACAEIAGERFTWAGR 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                     F C V+IR+  DPVP F +  D  + V  +    GVA GQ  V Y     
Sbjct: 293 A----PSSTSFACDVQIRAHADPVPAFAELEDGVLTVRPDAPFDGVAPGQTAVLYDG--- 345

Query: 374 EARVLGGGIISGSKRSDAVE 393
             RV+G   I  +  +  VE
Sbjct: 346 -TRVIGQFTIDRTVSAVPVE 364


>gi|256846579|ref|ZP_05552036.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|294784166|ref|ZP_06749467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
 gi|256718348|gb|EEU31904.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|294488236|gb|EFG35581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
          Length = 343

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +SH V +  + F N VI  F   Y++G TP PCV C+  +KF  L  +  +  A+ 
Sbjct: 52  NKLGISHEVINIRKDFENIVIKYFLDGYSSGITPSPCVICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL    K  +
Sbjct: 112 VATGHYTSVEYS---EIFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYTKHEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ DK DSQ +CF ++G Y + +K       ++G+ +  +G ILG+H G  
Sbjct: 169 REIALKIGLEVYDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L    + L    +      E   
Sbjct: 228 LYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDIVELINYKF----SVEYEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ + +Y  + +     A GQ  V FY        V+G
Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|323507819|emb|CBQ67690.1| related to trna methyltransferase [Sporisorium reilianum]
          Length = 479

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 109/404 (26%), Positives = 168/404 (41%), Gaps = 41/404 (10%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRK------ 64
           L      K  RV VA+SGGVDSSV A LL +   YD+  V ++ +N    S         
Sbjct: 73  LPPHGPQKGDRVTVALSGGVDSSVTALLLAQASHYDLHAVFMRNWNELDESGTMQPGSGG 132

Query: 65  -GSCCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
              C   +D +D + VC  +  +   + D    +   V  P    +  G TP P V CNR
Sbjct: 133 ATGCTWQRDWHDVQAVCRHLGNMPVSMVDLSREYWTQVFEPALDEWRQGTTPNPDVSCNR 192

Query: 123 TVKFSDLLSVT---RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            +KF  L+      R+ G    LATGHY             R ++ R  D  +DQ+Y+L 
Sbjct: 193 EIKFGALMERLLPEREKGRKSWLATGHYAHVAWSEQ----GRPMLMRAKDRTKDQTYYLS 248

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG---------KYF 229
           +  + +L    FPL  + K  VR+LA++  L  A++ +S  ICFV               
Sbjct: 249 SVAEDRLAHAHFPLAHLLKSQVRELAKKHSLPTAERRESMGICFVGTRGSDGSKGISNTQ 308

Query: 230 DVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
                +N  I +  G+IV  + Q++  H G+   T+GQ   +  A  +  +V   D  ++
Sbjct: 309 GFSTFLNGYITSPPGEIVDEHAQVVATHRGLHTLTVGQGARIRGATSK-YYVAKKDIANN 367

Query: 289 RVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDG---FKCFVKIRSSQDPVPVFVQ 342
           R++         L   R+Y+REI W+      +    G        ++R  Q      V 
Sbjct: 368 RIVAVQGKQHPMLLCRRLYVREIEWIWREPPPELKEGGAGKVTLLAQVRHRQVETECIVS 427

Query: 343 R---NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           R      G  V+F +  + VA GQ    +  +      LG  +I
Sbjct: 428 RAKGGGSGYVVEFAEPVLAVAPGQVLGLWRGE----WCLGSAVI 467


>gi|262341313|ref|YP_003284168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272650|gb|ACY40558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 398

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 109/393 (27%), Positives = 182/393 (46%), Gaps = 49/393 (12%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DSSV A +LK+ GY+VIG+ +  +    +   K +      + DA  V   +N+   V +
Sbjct: 15  DSSVAALILKKKGYEVIGLFMHNWEEEDSVFNKCTTWKEDKI-DAMLVAQQLNIPFQVIE 73

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL 151
            ++ ++  VI      Y +G+TP P + CNR +KF+  L     LGAD++ATGHY+    
Sbjct: 74  MKKEYKKYVIDYMFHEYESGKTPNPDILCNREIKFNIFLKKAIDLGADLIATGHYVNKEK 133

Query: 152 YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
            + +  K    +    DL +DQSYFL   TQ QL    FPLG + K  VR +A + GL  
Sbjct: 134 IIKN-KKIIYRLLIGKDLNKDQSYFLCQLTQYQLGKTLFPLGLLTKNQVRKIAEKNGLRN 192

Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------------------- 248
           A K +SQ +CFV + K  + +++    I  +G++V +                       
Sbjct: 193 AHKKESQGLCFVGKIKLSEFLQK--KIIPKKGEVVCINSDALVYKENQFPFPSSKEEELL 250

Query: 249 -----------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG--- 293
                      +G+I+G H G   +T GQR+G+ +    + LFV+  D   + V  G   
Sbjct: 251 FLSRKKKYKKSDGKIIGYHKGAHCFTKGQRKGIALGGYQKALFVIETDVKENIVYTGIGK 310

Query: 294 PRESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351
               L    ++++E  I+W+ + L      +    F +IR  Q      + +   G++++
Sbjct: 311 KHPGLYRKSLFIQEKNIHWIREDL-SLKEGEKMDVFCRIRYRQSLQKSKLYKIKKGMFIE 369

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           FE  +  +  GQ   +Y        ++G G+IS
Sbjct: 370 FETMQCAITEGQFAAWYIG----KELVGSGVIS 398


>gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 354

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 171/367 (46%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++    K       C A +D+  A  + 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GKDDADYMDCAAEEDLEIASAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V D    + + V        + G TP P V CN+ +KF        +   D 
Sbjct: 58  RRYGLPLEVVDLHREYWDNVAAYAIDKISRGLTPNPDVMCNKLIKFGCFERRAGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K  V
Sbjct: 117 TATGHYATTVLQTG-----KIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A    L  A + DSQ ICF+ +  Y D V+R       EGDIV L  G+ +G+H G 
Sbjct: 172 RDIALRAKLPSARRRDSQGICFLGKINYNDFVRRFLGE--REGDIVELETGKKIGKHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D + + V V      E    +   +R+ +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVRKDVDGNVVYVSRGYNTEQQFGNEFCIRDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            D V +  K   KIR + + +   + R + G ++  ++   G+A GQ  V Y  D     
Sbjct: 289 GD-VENDIKVTFKIRHTPEFIKGRLLREEGGYHIVSDEKLQGIAPGQFGVVY--DVASRL 345

Query: 377 VLGGGII 383
            +G G I
Sbjct: 346 CIGSGEI 352


>gi|308183444|ref|YP_003927571.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4]
 gi|308065629|gb|ADO07521.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4]
          Length = 342

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D  + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KDGEYFIKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|317010016|gb|ADU80596.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori India7]
          Length = 342

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + + ++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNVQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + ++VG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPTKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYQDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|317178374|dbj|BAJ56162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F30]
          Length = 342

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + + ++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNTQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDYALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KSGEYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|288802136|ref|ZP_06407577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica D18]
 gi|288335571|gb|EFC74005.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica D18]
          Length = 360

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 162/371 (43%), Gaps = 23/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  R+ V +SGGVDSSVV     R G       +++       K    C + +D+  A  
Sbjct: 7   EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATL 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         AG TP P V CNR +KF            
Sbjct: 64  VARRFGCKLEVIDCHKEYWDKVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +G H 
Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEI--GDVIELETGKKIGEHK 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FV+  D   + + V               L + ++L +G
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEG 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           +         K   KIR + +  P  V+  +D    +   ++  GVA GQ CV Y  D  
Sbjct: 295 I----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQ 348

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 349 HHRCFGSGEIT 359


>gi|317182580|dbj|BAJ60364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F57]
          Length = 342

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L    +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+FE+   GVA GQA V Y  D    
Sbjct: 284 ------KNGEYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|268680794|ref|YP_003305225.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618825|gb|ACZ13190.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 339

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 36/370 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ + MSGG+DSS  A LLK +G++V+G+ L+L++  K          G ++ +  +V 
Sbjct: 1   MKIALLMSGGIDSSYCAYLLKEEGHEVVGIYLKLHDDDK--------KHGVNIANIEKVS 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  ++ D +  F+  +   F  SY  G TP PC  CN  +KF        + G + 
Sbjct: 53  QHLGIKTHIIDAKALFKEQIYDYFVRSYEQGLTPNPCAFCNPKMKFGFAFEKALEFGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +            +    D  +DQSYFLF   ++ +  + FPLG+MKKE +
Sbjct: 113 IATGHYARVKEG---------HIQEAKDKSKDQSYFLFGLKREVIEKIIFPLGEMKKEEI 163

Query: 201 RDLAREMGLD----IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + +A E  L     +    DSQ+ICFV    Y D++++    +  +G I   +G+++G H
Sbjct: 164 KPIALEK-LPWLGSLESYKDSQEICFVTDT-YIDILQKHL-NVDQKGLIKDTSGKVIGEH 220

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+GL +    +P FVV +D  ++ VI G +E L   R+  +  + L +  
Sbjct: 221 KGYMHYTIGKRKGLTINGAHDPHFVVGIDAKTNTVIAGKKEELLQKRVVAQNFS-LAEDF 279

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
            E          VK+R     V   V+   D +  + E+   G+ASGQA V Y +D    
Sbjct: 280 KEG------TYGVKVRYRSPQVKAHVKIEGDKIITELEEGVYGLASGQALVVYQND---- 329

Query: 376 RVLGGGIISG 385
            VLGGG I  
Sbjct: 330 LVLGGGWIEA 339


>gi|47678421|emb|CAG30331.1| dJ1163J1.4 [Homo sapiens]
 gi|109451226|emb|CAK54474.1| TRMU [synthetic construct]
 gi|109451804|emb|CAK54773.1| TRMU [synthetic construct]
 gi|119593832|gb|EAW73426.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_e [Homo sapiens]
 gi|162844904|emb|CAP58845.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo
           sapiens]
 gi|208965646|dbj|BAG72837.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
           [synthetic construct]
          Length = 376

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 165/367 (44%), Gaps = 45/367 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +       
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P     +
Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPA 299

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSE 356
           L    +    ++W+ +      V D   +C  + R     V   +Q    G  V      
Sbjct: 300 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQ----GGRV------ 349

Query: 357 VGVASGQ 363
                GQ
Sbjct: 350 ----PGQ 352


>gi|298735640|ref|YP_003728165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
 gi|298354829|emb|CBI65701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
          Length = 360

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 197/369 (53%), Gaps = 32/369 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ 
Sbjct: 18  KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKA 69

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + +   V D+++ F+NAV   F S+Y  G+TP PC  CN  +KF   L    QLG +
Sbjct: 70  CEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGCE 129

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ 
Sbjct: 130 KIATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 184

Query: 200 VRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           ++ LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G 
Sbjct: 185 IKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLKGEIIGT 241

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L +  +  +  + + D 
Sbjct: 242 HKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLAMRFLKAKNKSLMKDF 301

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                     + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D   
Sbjct: 302 -------KSGEYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI-- 352

Query: 375 ARVLGGGII 383
             +LGGG+I
Sbjct: 353 --LLGGGVI 359


>gi|291288175|ref|YP_003504991.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885335|gb|ADD69035.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 344

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 186/366 (50%), Gaps = 29/366 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++AMSGGVDS++ A ++K  GYDVIG T++ ++              + ++D  +   
Sbjct: 4   KVLIAMSGGVDSTLTAHIMKEKGYDVIGCTIKFFDE-----------QTEALHDGEKAAK 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  Y  DY + F+  VI  F  +Y  G TP PC  CNR  KF+ L    +  GA  +
Sbjct: 53  ELGIDWYYADYTDYFKEDVISYFIRTYIQGRTPNPCAHCNRHAKFNYLFREMKSKGATKI 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY             +    +  D+ +DQSY+L      Q   + FPLG+M+K  V+
Sbjct: 113 ATGHYAGKVKV-----GEKYFFKKGQDVRKDQSYYLCLLKDHQREVIEFPLGEMEKTDVK 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGII 260
             A E+GL +ADK +SQDICF++ G Y D ++ +I+     +G  +  +G+    H GII
Sbjct: 168 AKAAELGLSVADKDESQDICFLKGGDYRDFLESKIDKDSIKKGWFI-KDGEKFKEHEGII 226

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQR+GLG+   EPLFV ++D  S  +I+G ++ +    + + +       +F D  
Sbjct: 227 YYTIGQRKGLGIGYHEPLFVKHIDAESGNIILGNKDEVTGTGVKVHDF------VFPDDH 280

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
              F+  VK+R    PVP  V+ +  +   + F++ E     GQ    Y +D        
Sbjct: 281 DRVFRAEVKVRYRMAPVPCMVEIHPGNTATILFDRPEFAPTPGQIACVYENDLVTC---- 336

Query: 380 GGIISG 385
           GG I  
Sbjct: 337 GGYIES 342


>gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bergensis DSM 17361]
 gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bergensis DSM 17361]
          Length = 384

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 109/391 (27%), Positives = 160/391 (40%), Gaps = 39/391 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L   G       +++       K +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYELASHGLHPDCFYIRI---GPEEKEEWDCNSEEDMEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         +G TP P V CNR +KF            
Sbjct: 64  VAKRFGCKLQVVDCHQEYWSQVTRYTMEKVRSGFTPNPDVMCNRLIKFGAFDEKA-GHDY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIEGWQLKKAIFPIGHYEKN 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+    Y + V+R        GDIV L  G  +G H+
Sbjct: 178 EVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGE--QPGDIVELETGTKIGEHS 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V               + +++WL + 
Sbjct: 236 GHWFHTIGQRKGLGLSGG-PWFVIKKDVEHNVLYVSHGYDPETAYKKDFKIHDLHWLTEE 294

Query: 315 LFED----------AVVDGFKCFVKIRSSQDPVPVFV-----------QRNDDGVYVDFE 353
                                   KIR + +  P ++           +   D   +   
Sbjct: 295 PTPPHHLSEASESQKPGSYIPITFKIRHTPEYHPGYLDLNAASSSDHTELTGDTATIHSL 354

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
               GVA GQ CV Y  D    R  G G I+
Sbjct: 355 DKIHGVAPGQFCVIY--DEQHHRCFGSGEIT 383


>gi|328944127|ref|ZP_08241592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae DSM 15829]
 gi|327492096|gb|EGF23870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae DSM 15829]
          Length = 430

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 182/375 (48%), Gaps = 24/375 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P   RV + MSGGVDS++ AALL+  GYDV  + ++ ++      +   C    D+ DA
Sbjct: 66  APFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNWSRDLPGFK---CTWADDLADA 122

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R+   + ++  V+D E+ ++  V+    ++Y  G TP P V CN+TVKF    +   + 
Sbjct: 123 ERLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEH 182

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
           GAD +ATGHY R    V  D      + R  D  +DQ+YFL+      L    FP+G + 
Sbjct: 183 GADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIA 238

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254
            KE VR +    GL I  K DS  ICF+ +      +  ++      GDI+    G +LG
Sbjct: 239 SKEIVRQMCATRGLGIESKPDSDGICFIGEVGIRTFL--LDTLSKRAGDIIEWETGNVLG 296

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWL 311
            H+G   YTIGQR+GL +  G   +VV  D   +RV V        L    + L ++  L
Sbjct: 297 HHDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLL 356

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
            + + E A+       V++R +     V V+  +D  + + FE +   +A+GQ+ V Y  
Sbjct: 357 NESIDEHAL-----YQVRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQG 411

Query: 371 DSNEARVLGGGIISG 385
                  +GGGII  
Sbjct: 412 ----KICVGGGIIQK 422


>gi|161353441|ref|NP_223972.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori J99]
 gi|205371768|sp|Q9ZJQ0|MNMA_HELPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + +IVG +E L  H +  +  +   D  
Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D  + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KDGEYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|308234530|ref|ZP_07665267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae DSM 15829]
          Length = 410

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 182/375 (48%), Gaps = 24/375 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P   RV + MSGGVDS++ AALL+  GYDV  + ++ ++      +   C    D+ DA
Sbjct: 46  APFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNWSRDLPGFK---CTWADDLADA 102

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R+   + ++  V+D E+ ++  V+    ++Y  G TP P V CN+TVKF    +   + 
Sbjct: 103 ERLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEH 162

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
           GAD +ATGHY R    V  D      + R  D  +DQ+YFL+      L    FP+G + 
Sbjct: 163 GADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIA 218

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254
            KE VR +    GL I  K DS  ICF+ +      +  ++      GDI+    G +LG
Sbjct: 219 SKEIVRQMCATRGLGIESKPDSDGICFIGEVGIRTFL--LDTLSKRAGDIIEWETGNVLG 276

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWL 311
            H+G   YTIGQR+GL +  G   +VV  D   +RV V        L    + L ++  L
Sbjct: 277 HHDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLL 336

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370
            + + E A+       V++R +     V V+  +D  + + FE +   +A+GQ+ V Y  
Sbjct: 337 NESIDEHAL-----YQVRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQG 391

Query: 371 DSNEARVLGGGIISG 385
                  +GGGII  
Sbjct: 392 ----KICVGGGIIQK 402


>gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
 gi|217987412|gb|EEC53742.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
          Length = 365

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 114/368 (30%), Positives = 169/368 (45%), Gaps = 19/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   G+      +++    K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKI---GKDDADYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCFERYAGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 117 TATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A +  L  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ILG H G 
Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGRINYNDFVRRFLGE--KEGRIIELETGKILGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D + + + V      E    +   +++ +++ +  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E  V        KIR + D +   + ++ DG  +  E+   G+A GQ  V Y  D     
Sbjct: 289 E-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVY--DEASRL 345

Query: 377 VLGGGIIS 384
            +G G I 
Sbjct: 346 CIGSGEIK 353


>gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 365

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 114/368 (30%), Positives = 169/368 (45%), Gaps = 19/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   G+      +++    K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKI---GKDDADYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCFERYAGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 117 TATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A +  L  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ILG H G 
Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGE--KEGRIIELETGKILGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D + + + V      E    +   +++ +++ +  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E  V        KIR + D +   + ++ DG  +  E+   G+A GQ  V Y  D     
Sbjct: 289 E-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVY--DEASRL 345

Query: 377 VLGGGIIS 384
            +G G I 
Sbjct: 346 CIGSGEIK 353


>gi|2314503|gb|AAD08378.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 360

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 195/369 (52%), Gaps = 32/369 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ 
Sbjct: 18  KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKA 69

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG +
Sbjct: 70  CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ 
Sbjct: 130 KIATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 184

Query: 200 VRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           ++ LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G 
Sbjct: 185 IKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGT 241

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  + + D 
Sbjct: 242 HKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF 301

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                     + F+K R    P    V   D+ + V F++   GVA GQA V Y  D   
Sbjct: 302 -------KDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDI-- 352

Query: 375 ARVLGGGII 383
             +LGGG+I
Sbjct: 353 --LLGGGVI 359


>gi|297626267|ref|YP_003688030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922032|emb|CBL56594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 357

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 31/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV VA+SGGVDS+V AA +   G++ +GV L L              +  +  DAR V 
Sbjct: 1   MRVAVALSGGVDSAVTAARVVEAGHEAVGVHLLL-----------GAGSVPETRDARGVA 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +   V+D  +RF + V+  F SSYAAG TP PC+ CNR VKF  LLS   + G D 
Sbjct: 50  DAVGIPLVVWDLRDRFEHRVLDYFTSSYAAGRTPNPCLRCNREVKFRGLLSRGIEEGFDA 109

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199
           +ATGHY R +            + R  ++ +DQSY L   +Q  L    FPLG +  K+ 
Sbjct: 110 VATGHYARLQPARD----GSIGLHRAANVRKDQSYVLGVLSQDDLRHCLFPLGTVTTKDE 165

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           VR+ A   GL +A K DS DICFV +G   + +    A    +GDIV   G +LG H+GI
Sbjct: 166 VREEAERRGLPVAHKPDSTDICFVTEGGAAEFLAGRLAD--RQGDIVDARGTVLGTHHGI 223

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            ++T+GQR+GLG+      G+P +V  LD  ++ V VG    L V ++ + +++  G  L
Sbjct: 224 QHFTVGQRKGLGLRRPADDGKPRYVTALDAATNTVHVGQGRELLVGQVDVEDLSDTGTAL 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                   ++  V+ R+    VP  ++  D  + V F +   GVA GQ  VFY +D    
Sbjct: 284 GPH-----WRGLVQFRAHGRAVPARLEEADGQLRVHFAEPVSGVAPGQFIVFYDAD---- 334

Query: 376 RVLGGGIISGS 386
           RV G   I  S
Sbjct: 335 RVRGAAEIVAS 345


>gi|255010205|ref|ZP_05282331.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacteroides fragilis 3_1_12]
          Length = 353

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 36/371 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG DSSV A LL   GY+V GVT + Y    +++          + DAR +   + + 
Sbjct: 1   MSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARALATRLGIE 51

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H  +D  E FR  ++  F   Y AG TP+PC  CN  +K+  L  +  ++G   LATGHY
Sbjct: 52  HITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGIFYLATGHY 111

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
           +R +   G        +    D ++DQS+FL+   Q  L  +  P+G+M K   R  A  
Sbjct: 112 VRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKPEARAYAAG 166

Query: 207 MGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIA-----------LEGDIVHLNGQILG 254
            G + ++ K DS  +CF     Y   +K+                  +G  +  +G  + 
Sbjct: 167 RGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFLDESGNFIA 225

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ +   +FV  +   ++ VI+ P +SLE   ++L++ N +   
Sbjct: 226 WHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLKDWNIIN-- 283

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
             E  ++      V+IR  +      V    +G +++   +    +A GQA  FY     
Sbjct: 284 --ESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQAAAFYKD--- 338

Query: 374 EARVLGGGIIS 384
              +LGGGII+
Sbjct: 339 -GLLLGGGIIT 348


>gi|307638008|gb|ADN80458.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyl transferase
           [Helicobacter pylori 908]
 gi|325996611|gb|ADZ52016.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2018]
 gi|325998201|gb|ADZ50409.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2017]
          Length = 342

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALKHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKISYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLKGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + +IVG +E L    +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KSGEYFIKARYRSVPAKAFVSLEDEVIEVEFKEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|217032089|ref|ZP_03437589.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128]
 gi|216946237|gb|EEC24845.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128]
          Length = 342

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F+NAV   F S+Y  G+TP PC  CN  +KF   L    QLG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLKGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + ++VG +E L +  +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLAMRFLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V+F++   GVA GQA V Y  D    
Sbjct: 284 ------KSGEYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|289705112|ref|ZP_06501516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus SK58]
 gi|289558140|gb|EFD51427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus SK58]
          Length = 378

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 141/381 (37%), Positives = 190/381 (49%), Gaps = 23/381 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +  Y +D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ LL    +LG 
Sbjct: 60  ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY   R   G DG     + R  D  +DQSY L   T  QL    FPL D   K
Sbjct: 120 DAVCTGHYAAVRP--GPDGS--LELHRAADDAKDQSYVLGVLTSDQLAHCLFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR  A E GL +A K DS DICF+  G     +          G IV   GQ LG H 
Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA--PGPIVDAEGQELGTHA 233

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G+P FV+ +    + V+VG RE L+V RI     +W G 
Sbjct: 234 GAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENTVVVGGRELLDVDRITGIRPSWAGA 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFY 368
            + E      F C ++ R+  + V    ++  D     G  ++  +   GVA GQ  V Y
Sbjct: 294 PVPEARTGAWFDCALQFRAHGEIVEARARQRADEAGNPGWEIEPARPLRGVAPGQTAVLY 353

Query: 369 TSDSNEARVLGGGIISGSKRS 389
                  RVLG   I  ++ +
Sbjct: 354 RG----TRVLGQATIDTARNA 370


>gi|85860139|ref|YP_462341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
 gi|123517192|sp|Q2LVR6|MNMA2_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|85723230|gb|ABC78173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
          Length = 342

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/329 (33%), Positives = 165/329 (50%), Gaps = 30/329 (9%)

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR     + +  +V D  E F   ++      Y    TP PCV CNR +KF  LL    +
Sbjct: 18  ARHAAHQLGIPLHVADVTETFDEEIVQYLTREYLVARTPNPCVVCNRKIKFKTLLYYADR 77

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L    +ATGHY R           R  + R +D  +DQSYFLF   Q+QL  + FPLG++
Sbjct: 78  LACHFVATGHYARVFHNRQ---TGRYALLRGLDQAKDQSYFLFLLGQEQLSRILFPLGEL 134

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNGQILG 254
            K+ VR +A  MG++   + +SQ+ICF+    Y   ++R   +  A+ GDIV  +G++LG
Sbjct: 135 TKKEVRSVALTMGVEAVREKESQEICFIPDDDYKTFIERHMGSSPAIPGDIVDRSGRLLG 194

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            HNGI ++TIGQR+GL +A   P +V+ +D+  +RV+VG  E      + +  ++W+   
Sbjct: 195 SHNGIHSFTIGQRKGLHIAAPRPYYVLAIDREKNRVVVGHEEEQGFSGLIVSGVSWIDGE 254

Query: 315 LFEDAVVDGFKCFVKIRSSQDPV-------------------PVFVQRNDDGVYVDFEKS 355
              + V   F+  V+IR     V                   P   +   D + + F++ 
Sbjct: 255 SPREEV---FETLVRIRYRHRGVSSVVCPLSAGDEICPATGRPADHEEAGDKLIIRFQEP 311

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +  VA GQA VFY+ D    RV+GGG I 
Sbjct: 312 QRAVAPGQAAVFYSDD----RVIGGGWIE 336


>gi|154509242|ref|ZP_02044884.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798876|gb|EDN81296.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC
           17982]
          Length = 363

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 140/377 (37%), Positives = 193/377 (51%), Gaps = 23/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +  +  +     CC+ +D  DA R 
Sbjct: 1   MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPQECRIGSRGCCSIEDAGDAARA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I +  YV+D  + F   VI  F + Y AG TP PCV CN  VKF +L +  R LG D
Sbjct: 61  AEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            + TGHY         DG     + R  D  +DQSY L     ++L  +  PLGD   K 
Sbjct: 121 AVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNKA 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A  +GL +++K DS DICF+  G     ++      A EG+IV  +G++LGRH G
Sbjct: 176 WVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLG--AAEGEIVSPDGEVLGRHEG 233

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYT+GQR+GLG+      G P +V+     +++V+VG  E L + RI   +  WL   
Sbjct: 234 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLASD 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              D   D    FV++R+   PVPV       +   + V    S  GVA GQ+ V Y   
Sbjct: 294 ---DDGSDATDLFVQLRAHGTPVPVASLTRDLDAGTISVVLASSARGVARGQSMVVYRG- 349

Query: 372 SNEARVLGGGIISGSKR 388
               RVLG G I  + R
Sbjct: 350 ---TRVLGEGTIDATGR 363


>gi|167764091|ref|ZP_02436218.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC
           43183]
 gi|167698207|gb|EDS14786.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC
           43183]
          Length = 350

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 170/358 (47%), Gaps = 23/358 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A  L+  GY+V GVT + Y     ++          + DAR
Sbjct: 2   KSKERVLLGMSGGTDSSVAAMKLQEAGYEVTGVTFRFYEVGGKTEY---------LEDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR  +I  F   Y AG TP+PC  CN  +K+  L  +  + G
Sbjct: 53  ALAGRLGIEHITYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWKLLAEIADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R      +       +   +D ++DQ++FL+   Q  L  +  P+GDM K
Sbjct: 113 IYWISTGHYVRKLFLEDN-----YYIAPAVDRDKDQTFFLWGLKQDILQRMLLPMGDMTK 167

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
           E  R  A E G   +A K DS  +CF     Y   +KR      L G    +   G +LG
Sbjct: 168 EDARAYAAERGFMRVAAKKDSIGVCFCPL-DYRSFLKREVPMEQLPGRGHFLDEKGNVLG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ +   +FV  +   ++ V++ P  SL    +YL++ N +   
Sbjct: 227 WHEGYPFYTIGQRRGLGIHLNRAVFVKEVRMETNEVVLAPLASLYKKEMYLKDWNLIS-- 284

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
                V+      VKIR  +      V + ++G + V   +    +A GQA  FY +D
Sbjct: 285 --AHRVLGAETVIVKIRYRKQANRCMVAQEENGHLRVSLLEPLESIAPGQAAAFYDAD 340


>gi|302346886|ref|YP_003815184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica ATCC 25845]
 gi|302150717|gb|ADK96978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella melaninogenica ATCC 25845]
          Length = 360

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 162/371 (43%), Gaps = 23/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  R+ V +SGGVDSSVV     R G       +++       K    C + +D+  A  
Sbjct: 7   EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATL 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         AG TP P V CNR +KF            
Sbjct: 64  VTRRFGCKLEVIDCHKEYWDQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +G H 
Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEI--GDVIELETGKKIGEHK 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FV+  D   + + V               L + ++L +G
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEG 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           +         K   KIR + +  P  V+  +D    +   ++  GVA GQ CV Y  D  
Sbjct: 295 I----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQ 348

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 349 HHRCFGSGEIT 359


>gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20]
          Length = 366

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++    +       C A +D+  A  + 
Sbjct: 13  MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GRDDADYMDCSAEEDMEMASAIA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF        +   DV
Sbjct: 70  RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDV 128

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +    D  +DQ+ FL      Q+  L FPLG + K  V
Sbjct: 129 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 183

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A   GL  A + DSQ ICF+ +  Y D V+R       EGDIV L  G+ LG+H G 
Sbjct: 184 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGE--REGDIVELETGRKLGKHRGY 241

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESL-EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V  G   +L   +   + + +++ D  +
Sbjct: 242 WFHTIGQRKGLGLGGG-PWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPW 300

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + A  +  +   KIR + + V   +Q+  +G  +  E+   G+A GQ  V Y +D+    
Sbjct: 301 KGA-QEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADAR--L 357

Query: 377 VLGGGII 383
            +G G I
Sbjct: 358 CVGSGEI 364


>gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
 gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|156861805|gb|EDO55236.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
 gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 354

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++    +       C A +D+  A  + 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GRDDADYMDCSAEEDMEMASAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF        +   DV
Sbjct: 58  RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDV 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +    D  +DQ+ FL      Q+  L FPLG + K  V
Sbjct: 117 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A   GL  A + DSQ ICF+ +  Y D V+R       EGDIV L  G+ LG+H G 
Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGE--REGDIVELETGRKLGKHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESL-EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V  G   +L   +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + A  +  +   KIR + + V   +Q+  +G  +  E+   G+A GQ  V Y +D+    
Sbjct: 289 KGA-QEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADAR--L 345

Query: 377 VLGGGII 383
            +G G I
Sbjct: 346 CVGSGEI 352


>gi|329964462|ref|ZP_08301516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328524862|gb|EGF51914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 357

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 179/370 (48%), Gaps = 26/370 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A  L+  GY+V GVT + Y    A+           + DAR
Sbjct: 9   KSKERVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGATNY---------LDDAR 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR+ +I  F   Y AG TP+PC  CN  +K++ L  +  + G
Sbjct: 60  SLASRLGIEHVTYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWALLAKIADEKG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L  G     +  M   +D ++DQ++FL+   Q  +  +  P+GD+ K
Sbjct: 120 IYWVSTGHYVRKVLQGG-----KYYMAPAVDKDKDQTFFLWGLKQDIMRRMLLPMGDITK 174

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE--GDIVHLNGQILG 254
              R  A+  G   +A K DS  +CF     Y   ++R      L   G  +  NG+ LG
Sbjct: 175 VEARAFAKARGFHEVATKKDSIGVCFCPL-DYRSFLQREADVRRLPGKGKFIDENGRFLG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ M + +FV  +    + V++ P  SL    ++L+  N + D 
Sbjct: 234 WHEGYPFYTIGQRRGLGIQMNKAVFVKEISVEKNEVVLAPLSSLYKQEMWLKAWNLVEDS 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
                V    +  VKIR  +      V     G ++V   +    +A+GQA  FY  D  
Sbjct: 294 ----RVFCAEEVIVKIRYRKQSNRCRVTLTAGGLLHVRLIEPLESIATGQAAAFYAKD-- 347

Query: 374 EARVLGGGII 383
              +LGGGII
Sbjct: 348 -GLLLGGGII 356


>gi|311254917|ref|XP_003126013.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Sus
           scrofa]
          Length = 415

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 105/368 (28%), Positives = 165/368 (44%), Gaps = 36/368 (9%)

Query: 42  RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
             GY V GV ++ ++       +G C A +D  DA RVC  +++      Y + + + V 
Sbjct: 20  ECGYQVTGVFMKNWD---LLDERGVCAADKDCEDAYRVCQILDLXFRQVSYVKEYWHDVF 76

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRR 160
             F + Y  G TP P + CN+ +KFS   +     LGAD +ATGHY R+     +  +++
Sbjct: 77  SDFLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTSQEDEEVFRQK 136

Query: 161 RI------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            I                  + +  D  +DQ++FL   +Q  L    FPLG + K  V+ 
Sbjct: 137 HIRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKK 196

Query: 203 LAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260
           +A E  L  +  K +S  ICFV +  + D + +        G  + + + ++LG H G  
Sbjct: 197 IAAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQ--PRPGKFISIEDNKVLGTHKGWF 254

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317
            YT+GQR  +G  + EP +VV  D  S  V+V P     +L    +    ++W+ +    
Sbjct: 255 LYTLGQRAKIG-GLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEEPPA 313

Query: 318 DAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
             V D    C  + R     VP  +  N DG V+V   ++   +A GQ  VFY  D    
Sbjct: 314 ALVRDKMMACHFRFRHQMALVPCVLTLNQDGTVWVTAVEAVRALALGQFAVFYKGD---- 369

Query: 376 RVLGGGII 383
             LG G I
Sbjct: 370 ECLGSGKI 377


>gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella marshii DSM 16973]
 gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella marshii DSM 16973]
          Length = 382

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 167/378 (44%), Gaps = 25/378 (6%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++  + ++ V +SGGVDSSVV   L R G       +++         +  C + +D+
Sbjct: 20  MKESLSNRKIAVLLSGGVDSSVVLHELSRAGLQPDCFYIKI---GPEEHEEWDCSSEEDL 76

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  V         V D  + + N V         AG TP P V CNR +KF       
Sbjct: 77  EMAGAVAARYGCRLEVVDCHQEYWNQVTKYTLEKVKAGFTPNPDVMCNRLIKFGAF-DEK 135

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +    +++ATGHY ++ +  G      + +    D  +DQ+ FL      QL    FP+G
Sbjct: 136 KGHEYELIATGHYAQTEIIDG-----HKWLVTSPDPVKDQTDFLAQLYDWQLRKALFPIG 190

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
             +KE VR +A    L  A + DSQ ICF+ +  Y D ++R       EG++V L  G+ 
Sbjct: 191 HYRKEEVRQIAEREHLINAKRKDSQGICFLGKINYNDYIRRYLGE--NEGEVVELETGKC 248

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREIN 309
           +G+H G+  +TIGQR GLG   G P + V  D   + + V               + + +
Sbjct: 249 IGKHKGLWFHTIGQRHGLGFGGG-PWYAVRKDVKRNILYVSKGFEPATAYRRDFEIADFH 307

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368
           +L         V+      KIR + +     +++  +G Y V  EK   GVA GQ CV Y
Sbjct: 308 FLT------LPVEMEDVCFKIRHTPEYHKAKLEKRGNGAYTVHAEKPVQGVAPGQFCVVY 361

Query: 369 TSDSNEARVLGGGIISGS 386
             D    R  G G I+ S
Sbjct: 362 --DEQHHRCFGSGEIAWS 377


>gi|161353438|ref|NP_208127.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori 26695]
 gi|205371769|sp|O25893|MNMA_HELPY RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 195/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+++G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P    V   D+ + V F++   GVA GQA V Y  D    
Sbjct: 284 ------KDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|109946881|ref|YP_664109.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter acinonychis str.
           Sheeba]
 gi|122973425|sp|Q17Z16|MNMA_HELAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109714102|emb|CAJ99110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 342

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 195/367 (53%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYNLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++ V   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSVVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      ++  +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARI-----EENDKVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           + LA      L   +   +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H 
Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGKIIGTHK 225

Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316
           G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  + + D   
Sbjct: 226 GYMQYTIGKRKGFNIKGALEPHFVVRIDAKKNELVVGKKEDLATHFLKAKNKSLMKDF-- 283

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                   + F+K R    P   FV   D+ + V+ ++   GVA GQA V Y  D     
Sbjct: 284 -----KSGEYFIKARYRSMPTKAFVSLKDEMIEVELKEPFYGVAKGQALVVYKDDI---- 334

Query: 377 VLGGGII 383
           VLGGG+I
Sbjct: 335 VLGGGVI 341


>gi|282878172|ref|ZP_06286968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccalis ATCC 35310]
 gi|281299590|gb|EFA91963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccalis ATCC 35310]
          Length = 360

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 165/371 (44%), Gaps = 25/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L + G       +++         +  C + +D+  A  
Sbjct: 9   KDKRIAVLLSGGVDSSVVVHELAQMGLHPDCFYIKI---GPEEAEEWDCSSEEDLEMATA 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + + V         AG TP P V CNR +KF            
Sbjct: 66  VAAKYGCRLQVVDCHKEYWSEVTKYTMEKVKAGYTPNPDVMCNRLIKFGAF-DAKVGHQY 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++ +  G     ++ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 125 DLIATGHYAQTEVIDG-----KKWLVTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKN 179

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+ Q  Y + ++R        GD++ L  G+ +G H 
Sbjct: 180 EVREIAEREHLVNAKRRDSQGICFLGQIDYNEYLRRYLGE--KHGDVIELETGKKIGEHR 237

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR GLG   G P FVV  D  ++ + V               + + ++L + 
Sbjct: 238 GLWFHTIGQRHGLGFGGG-PWFVVKKDVQANVLYVSRGYDPKTAYKSDFKVHDFHFLTE- 295

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
                 +D      KIR + +  P  +++  +G Y V   +   GVA GQ CV Y  D  
Sbjct: 296 -----PLDMEHITFKIRHTPEYHPATIEKTAEGCYIVHAAQPIHGVAPGQFCVVY--DEQ 348

Query: 374 EARVLGGGIIS 384
             R +G   I+
Sbjct: 349 HHRCIGSAEIT 359


>gi|293189756|ref|ZP_06608472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces odontolyticus F0309]
 gi|292821346|gb|EFF80289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces odontolyticus F0309]
          Length = 363

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 139/377 (36%), Positives = 192/377 (50%), Gaps = 23/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G+DV+GV + L +  +  +     CC+ +D  DA R 
Sbjct: 1   MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPQECRIGSRGCCSIEDAGDAARA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I +  YV+D  + F   VI  F + Y AG TP PCV CN  VKF +L +  R LG D
Sbjct: 61  AEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            + TGHY         DG     + R  D  +DQSY L     ++L  +  PLGD   K 
Sbjct: 121 AVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNKA 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A  +GL +++K DS DICF+  G     ++      A EG+IV  +G++LGRH G
Sbjct: 176 WVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLG--AAEGEIVTPDGEVLGRHEG 233

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
             NYT+GQR+GLG+      G P +V+     +++V+VG  E L + RI   +  WL   
Sbjct: 234 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLASD 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              D   D    FV++R+   PVPV       +   + V       GVA GQ+ V Y   
Sbjct: 294 ---DDGSDATGLFVQLRAHGTPVPVASLTRDLDAGTISVVLASGARGVARGQSMVIYRG- 349

Query: 372 SNEARVLGGGIISGSKR 388
               RVLG G I  + R
Sbjct: 350 ---TRVLGEGTIDETGR 363


>gi|32266455|ref|NP_860487.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter hepaticus ATCC
           51449]
 gi|81657428|sp|Q7U320|MNMA_HELHP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|32262506|gb|AAP77553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter hepaticus ATCC 51449]
          Length = 345

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 196/372 (52%), Gaps = 32/372 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V + MSGGVDSS  A LL   GY+VIG+ L+L++  K      + C         +V 
Sbjct: 1   MKVALLMSGGVDSSYCAHLLSSQGYEVIGIYLKLHDKNKKHDIYIANC--------EQVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++   V D  E F+ +V   F SSY  G+TP PC  CN  +KF   L    +LG D 
Sbjct: 53  AHLHIDFQVLDLREEFKKSVYDTFVSSYKEGKTPNPCAICNPLMKFGLGLQKALELGCDY 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +   G      + + + +D  +DQSYFL+A  Q+ +  + FPLG + KE +
Sbjct: 113 IATGHYAQIKEVNG-----IKRIAKAVDESKDQSYFLYALPQEAIDRIIFPLGALLKEDI 167

Query: 201 RDLAREMGLD----IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  A E+ L     +    +SQ+ICFV+Q  Y D++K ++  +  EG + + NG+ +G H
Sbjct: 168 KKTALEL-LPFLGTLQTYKESQEICFVEQS-YIDILK-LHDKVDNEGVVRNSNGKAIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  V    EP +V  ++  ++ ++VG +E L +  I    +N      
Sbjct: 225 KGYMHYTIGKRKGFSVFGSHEPHYVKAINPQNNEIVVGTKEELAIDSIKA--LNKSLPQA 282

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           F   + D     VK+R    P+   +    + +Y    +S  GVA GQA V Y  D    
Sbjct: 283 FNGGIYD-----VKVRYRSTPLKAQIDIQGEFIYAKLLESAYGVAQGQALVLYQEDC--- 334

Query: 376 RVLGGGIISGSK 387
            VLGGG+I+ ++
Sbjct: 335 -VLGGGVITQAQ 345


>gi|237743285|ref|ZP_04573766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229433064|gb|EEO43276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 343

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 187/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +   + 
Sbjct: 52  DKLEMIHKVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKTEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATG+Y         D   + ++     + +DQSY L+  +  +L  L FPL D  K+ +
Sbjct: 112 VATGYYTSVEYSKDFD---KYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL+I +K DSQ ICF ++G Y + +K       + G+ V  +G ILG H G  
Sbjct: 169 REIALKIGLEIHNKKDSQGICFAEEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L           E   
Sbjct: 228 LYTIGQRRGLGINLSKPVFITEIRPLTNEIVLGEFSELFTDKVELMN----SKFSVEYEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ + +Y  + +     A GQ  V FY        V+G
Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|281202538|gb|EFA76740.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Polysphondylium pallidum PN500]
          Length = 465

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 178/381 (46%), Gaps = 27/381 (7%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++K P+   + V +SGGVDS+V A LLK+ G+ V  V ++ ++ +      G C   +D 
Sbjct: 67  INKKPE---ICVGLSGGVDSAVTAYLLKKQGFKVQCVYIKSWDEKD---ELGYCTGEKDY 120

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ V + + +  Y  D+ + + N V   F   Y+ G TP P V CNR +KF+      
Sbjct: 121 SDAQDVANRLQLPIYHADFVKEYWNRVFNSFLEEYSQGYTPNPDVFCNREIKFNVFYEYA 180

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GAD++ATGHY R +    DD      + R +D  +DQSYFL  T  +QL    FP+G
Sbjct: 181 KSIGADMIATGHYSRLQY---DDELESARLLRGVDPNKDQSYFLCMTEGRQLYRSLFPIG 237

Query: 194 DMKKESVRDLAREMGLDIADKSD-SQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           D  K  ++ LA ++G         S+ ICFV +    + +          G  ++   Q 
Sbjct: 238 DYVKTDIKALANQLGYTNITAKTSSRGICFVGKRPLDEFLGTYINL--QPGAFLNPLDQQ 295

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYLREI 308
           +G+H G I YTIGQ+  +   + E   V  +DK+++ V V P    ++ L    + +  I
Sbjct: 296 VGQHKGAICYTIGQKANIS-GLEERYIVYKIDKDNNCVFVCPESLSKKYLMSQSLQVHRI 354

Query: 309 NWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRN------DDGVY-VDFEKSEVGVA 360
           NW+              K   ++R     V   +          + VY V  E+ E  VA
Sbjct: 355 NWINGIPERLLTAGVPMKIRCQVRYRSSLVNGEISLEHLAENPQESVYSVQLEQPERAVA 414

Query: 361 SGQACVFYTSDSNEARVLGGG 381
            GQ    Y  +S+    LGG 
Sbjct: 415 PGQILCIYEPESD--VCLGGA 433


>gi|208435231|ref|YP_002266897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori G27]
 gi|229486341|sp|B5Z8Y2|MNMA_HELPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|208433160|gb|ACI28031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori G27]
          Length = 342

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++GV L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGVYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++ V   F S+Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +    EP FVV +D   + +IVG +E L  H +  +  + + D  
Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P   FV   D+ + V F++S  GVA GQA V Y  D    
Sbjct: 284 ------KSGEYFIKARYRSVPTKAFVSLKDEMIEVGFKESFYGVAKGQALVVYKDDI--- 334

Query: 376 RVLGGGII 383
            +LGGG+I
Sbjct: 335 -LLGGGVI 341


>gi|294783066|ref|ZP_06748390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479944|gb|EFG27721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 343

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 189/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  AD 
Sbjct: 52  DRLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+    ++L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYS---ETFSKYLLKSVHSIIKDQSYILYRLAPEKLERLIFPLKPYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ DK DSQ +CF ++G Y + +K       ++G+ +   G+ILG+H G  
Sbjct: 169 REIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKEGKILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + + +F+  +   ++ +++G    L    I L    +      +   
Sbjct: 228 LYTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIELTNYKF----AVKFEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++      + R S       + +N+D +Y  + +     A GQ  V FY +      V+G
Sbjct: 284 LEDLNLLARPRFSSTGFYGKLIKNNDKIYFKYNEENAHNAKGQHVVFFYDN-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|269957192|ref|YP_003326981.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305873|gb|ACZ31423.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 400

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 195/397 (49%), Gaps = 36/397 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AAL    G+DV+GV + L  +R   +     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVEAGHDVVGVHMALSRNRDQFRTGSRGCCSIEDASDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV+D  ERF + V+  F + Y AG TP PCV CN  +KF  LL     LG D
Sbjct: 61  ADVLGIPYYVWDLSERFEDTVVADFLAEYEAGRTPNPCVRCNEHIKFETLLEKATALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198
            +ATGHY R            R + R  + E+DQSY L     ++L    FPLG    K 
Sbjct: 121 AVATGHYARVVERPD----GTRELHRSPNTEKDQSYVLAVMGPERLARAIFPLGGFASKA 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL ++ K DS DICFV  G     ++      +  G++V  +G ++G H+G
Sbjct: 177 EVRAEAARRGLAVSAKPDSYDICFVADGDTRGFLRDRLG--SRPGEVVDTSGAVVGEHDG 234

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQR+GL +      G+P +V+ +  ++++V+VGP E L V RI      W  D 
Sbjct: 235 AYAYTVGQRKGLALGRPAADGKPRYVLDVRTSTNQVVVGPAELLTVDRIAGDRAVWFTDP 294

Query: 315 LFEDAVVDGF------------------KCFVKIRSSQDPVPVFV-QRNDDGVYVDFE-K 354
                                          +++R+   PVP  +    D GV V+    
Sbjct: 295 APGPRASRDVGLPTPDTDVPGRPSSPVDDVEIQVRAHGTPVPARILDAADGGVEVELTGT 354

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
              GVA+GQ+ V Y       +VLG   ++ + R+ +
Sbjct: 355 PLRGVAAGQSLVVYRG----TQVLGQATVTRAWRAAS 387


>gi|34762114|ref|ZP_00143122.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888191|gb|EAA25249.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 343

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 185/365 (50%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y  G TP PC+ C+  +KF  L  +  +  A+ 
Sbjct: 52  DKLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY             + ++     + +DQSY L+  +  +L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYSK---IFSKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKSYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ DK DSQ +CF ++G Y   +K       ++G+ +  +G ILG+H G  
Sbjct: 169 REIALKIGLEVYDKKDSQGVCFAKEG-YKKFLKENLKDEIVKGNYIDKDGNILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L    +          
Sbjct: 228 LYTIGQRRGLGINLSKPVFITEIKPQTNEIVLGEFSELFTDKVELINYKFSVGY----EK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + +N + +Y  + +     A GQ  V FY        V+G
Sbjct: 284 LEDLELLARPRFSSTGFYGKLIKNKNKIYFKYNEENTHNAKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|189465036|ref|ZP_03013821.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM
           17393]
 gi|189437310|gb|EDV06295.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM
           17393]
          Length = 350

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 169/358 (47%), Gaps = 23/358 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A LL+  GY+V GVT + Y+S             + + DAR
Sbjct: 2   KSKKRVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSE---------GFEESLDDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   +N+ H ++D  E FR  +I  F   Y +  TP+PC  CN  +K+  L  +  ++G
Sbjct: 53  TLASRLNIPHIIYDARELFRERIIRYFIGEYLSARTPVPCTLCNNELKWPLLAKIADEMG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R              +    D ++DQ++FL+   Q  L  +  P+GD  K
Sbjct: 113 IYWISTGHYVRKVFQ-----DNHYFIAPAADRDKDQTFFLWGLKQDILERMILPMGDWTK 167

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
           + VR  A   G +  A K DS  +CF     Y   ++R      L G    +  +G  LG
Sbjct: 168 DEVRTYAAGRGFERAATKKDSLGVCFCPM-DYRSFLQREVPQELLPGKGRFIDESGTFLG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ M    FV  + K S+ VI+ P  SL    + L++ N +   
Sbjct: 227 WHKGYPFYTIGQRRGLGIHMNRAAFVKEICKASNEVILAPLASLYKTEMLLKDWNIVDAS 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371
              ++        VKIR  +      V    ++ ++V   +    +ASGQA  FY  D
Sbjct: 287 RLLNSP----NVIVKIRYRKQANYCTVGITAENLLHVQLHELLESIASGQAAAFYDED 340


>gi|237739846|ref|ZP_04570327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
 gi|229423454|gb|EEO38501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
          Length = 343

 Score =  352 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 185/365 (50%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  +  +  AD 
Sbjct: 52  DRLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+    ++L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYS---ETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ DK DSQ +CF ++G Y + +K       ++G  +   G ILG H G  
Sbjct: 169 REIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGKYIDKEGNILGEHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + + +F+  +   ++ +++G    L    I L    +      E   
Sbjct: 228 LYTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIELINYKF----AVEFEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           +       + R S       + +N+D +Y  + +     A GQ  V FY +      V+G
Sbjct: 284 IKDLNLLARPRFSSTGFYGKLIKNNDKIYFKYNEENAHNAKGQHVVFFYDN-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|167763337|ref|ZP_02435464.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
           43183]
 gi|167698631|gb|EDS15210.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
           43183]
          Length = 365

 Score =  352 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 112/367 (30%), Positives = 170/367 (46%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   G+      +++    K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKI---GKDDAEYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V        + G TP P V CN+ +KF        +   D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIEKVSRGFTPNPDVMCNKLIKFGCFEQRVGRH-FDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 117 TATGHYATTVLQNG-----KTWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A +  L  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ILG H G 
Sbjct: 172 RDIALKAQLPSARRRDSQGICFLGRINYNDFVRRFLGE--KEGRIVELETGKILGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D + + + V           H   +++ +++ +  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVRKDTDENVIYVSHGYDTELQYGHEFSMQDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E  + D      KIR +   +   + +++ G  +  ++   G+A GQ  V Y  D     
Sbjct: 289 E-GIKDEIPVTFKIRHAPGFIGGRLWQDETGYRIVSDEKLQGIAPGQFGVVY--DEAAKL 345

Query: 377 VLGGGII 383
            +G G I
Sbjct: 346 CIGSGEI 352


>gi|221633062|ref|YP_002522287.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159]
 gi|221155991|gb|ACM05118.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159]
          Length = 370

 Score =  352 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 189/385 (49%), Gaps = 29/385 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA+SGGVDS+V A LLK+ G++ +G+ L+L+++       G CC      DAR V  
Sbjct: 11  RVLVALSGGVDSAVTAYLLKQAGWEPVGIHLRLFDAAPGLD--GVCCGDVAAADARAVAA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +  +V D    F   V+ P    YA   TP PCV CN  V+   LL +   LG   +
Sbjct: 69  QIGIPFFVRDLRPEFEQEVVAPTVEEYARARTPNPCVFCNHRVRIPALLELAEALGIRFV 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R     G        +    D +RDQSY L+  T  QL  L FPLG+  K +VR
Sbjct: 129 ATGHYVRKVATPG-----GWRLAEARDAQRDQSYVLYRLTADQLERLLFPLGEYDKPTVR 183

Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +A+E GL +A K  S D+CF +  G    +V +     +  G ++    +++G H GI 
Sbjct: 184 AIAQEAGLFVARKPSSVDLCFAKTYGGIGRLVSQRRPETSRPGPLLDERDEVVGTHPGIA 243

Query: 261 NYTIGQRRGLGVA--MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             TIGQRRGL  A    E  +V  +D  ++ V V PRE +    + L +  W    L  D
Sbjct: 244 FVTIGQRRGLEWARPTPERRYVAEIDPATAVVRVAPRERILTRAVRLADPVWHDPVLTAD 303

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                     ++R     +P  ++ +    +V F++    +A GQ+ V Y  D    RV+
Sbjct: 304 ---------ARLRYQGPRIPARIEGD----WVIFDEPAPPLAPGQSVVLYVGD----RVV 346

Query: 379 GGGIISGSKRSDAVEESLLSVIGDE 403
           GGGI     R++  +ES +  +   
Sbjct: 347 GGGIAEEVVRTE--QESPIPALAQR 369


>gi|257467821|ref|ZP_05631917.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062110|ref|ZP_07926595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313687786|gb|EFS24621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 346

 Score =  352 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 187/366 (51%), Gaps = 25/366 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V+ MSGGVDSSV A LLK  GY+VIGVTL  +   K+   +        +  A+R+C
Sbjct: 4   KKAVIGMSGGVDSSVGAYLLKEQGYEVIGVTL-NHKKEKSLNEE--------IKAAQRIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H + D EE F+  VI  F   Y+ G TP PCV C+  VK   L     + GA  
Sbjct: 55  DFLGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDERVKMRVLFETADKEGAYF 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +  +R ++    D  +DQSY L+     ++  L FPL   +K+ +
Sbjct: 115 VATGHYSSVEYS---EEFKRDLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQI 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A+ +GL++ DK DSQ ICF ++G Y + +++       +G+ +  NG I+G H G  
Sbjct: 172 REIAKNIGLEVHDKEDSQGICFAKEG-YIEFLRKNLGDKIKKGNFIDSNGNIMGEHEGYQ 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ +    F+  ++K  + + +G  E L   R+ L++         +   
Sbjct: 231 LYTIGQRRGLGLKLPRAYFITKINKEKNEITIGEYEELYQKRVELKKF----KLSVKITD 286

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK--SEVGVASGQACVFYTSDSNEARVL 378
           +   K   + R S       +   ++ ++ +F++   +     GQ  V Y     +  VL
Sbjct: 287 ILDKKIIGRPRFSSFGASGKILFENEKLFFEFDEENPQTA--PGQHLVLY----YKNLVL 340

Query: 379 GGGIIS 384
           GGGIIS
Sbjct: 341 GGGIIS 346


>gi|325854955|ref|ZP_08171671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola CRIS 18C-A]
 gi|325483933|gb|EGC86873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola CRIS 18C-A]
          Length = 360

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 165/370 (44%), Gaps = 23/370 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R+ V +SGGVDSSVV     R G       +++       K +  C + +D+  A  V
Sbjct: 8   NRRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIRI---GPEEKEEWDCNSEEDMEMATAV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                    V D  + + N V         AG TP P V CNR +KF            D
Sbjct: 65  ARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDYD 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K+ 
Sbjct: 124 LIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYEKDE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258
           VR +A    L  A + DSQ ICF+    Y + V+R        GDI+ L  G+ +G H G
Sbjct: 179 VRRIAEREHLINAHRKDSQGICFLGNIDYNEYVRRYLGE--QTGDIIELETGKKIGEHRG 236

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGL 315
           +  +TIGQR+GLG+  G P FVV  D + + + V               L + ++L +G+
Sbjct: 237 LWFHTIGQRKGLGLGGG-PWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHFLTEGI 295

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374
            E       K   KIR + +  P  V++  DG   +       GVA GQ CV Y  D + 
Sbjct: 296 TELPE----KITFKIRHTPEYHPARVEQLPDGKCIIHSAGRIHGVAPGQFCVVY--DEHH 349

Query: 375 ARVLGGGIIS 384
            R  G G I+
Sbjct: 350 HRCYGSGEIT 359


>gi|227495064|ref|ZP_03925380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces coleocanis DSM 15436]
 gi|226831516|gb|EEH63899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces coleocanis DSM 15436]
          Length = 378

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 27/386 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G+DV  V + L +S ++ +     CC+ +D  DA R 
Sbjct: 1   MRVLAALSGGVDSAVAAARAVEAGHDVTAVHMALSSSPQSCRMGARGCCSLEDSVDAARA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +T+ + +YV+D  E F   VI  F   Y  G TP PCV CN  VKF +L    + LG D
Sbjct: 61  AETLGIPYYVWDLAEEFEETVINDFVEQYQLGRTPNPCVRCNEFVKFRELAERAKALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            + TGHY R      ++G   + + R  DL +DQSY L    +++L  +  PLGD+  K 
Sbjct: 121 AVCTGHYARV-----EEGPNGKQLLRARDLLKDQSYVLAVMGEEELDRVILPLGDVTSKT 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +VR+ A   GL +++K DS DICF+  G     ++         G+IV  +G +LG H G
Sbjct: 176 AVREEAEARGLGVSNKPDSYDICFIPDGDTQGFLRARLGENT--GNIVDPDGNVLGTHRG 233

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQR+GLG+      G+P +V+    +++ V+VG    L +  +   E+ WL   
Sbjct: 234 YFEYTVGQRKGLGIDRPAEDGKPRYVLETRPSTNEVVVGSATLLSIDTVRANELTWLATD 293

Query: 315 --------LFEDAVVDGFKC-FVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQA 364
                   + ++   D  +C + ++R+    +PV  +++  + V +   +   G+A+GQ+
Sbjct: 294 DQGEVLTEISQEMGTDDDQCLYAQMRAHGRAIPVVGLEKTTETVKIRLGEMVRGIAAGQS 353

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390
            V Y  +    RVL   +I  ++R  
Sbjct: 354 LVIYRGN----RVLAHAVIEFARREG 375


>gi|269838417|ref|YP_003320645.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787680|gb|ACZ39823.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sphaerobacter thermophilus DSM 20745]
          Length = 353

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 189/370 (51%), Gaps = 24/370 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VA+SGGVDS+V A  L+  G++ IG+ L+L++S   S  +G CC  Q  +DAR V +
Sbjct: 3   RILVALSGGVDSAVAALTLQSLGWEPIGIHLRLFDSDPESIAEGVCCGDQAAFDARLVAN 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  YV D  E F   V      SYA  ETP PC+ CN  V+   LL +   LG   +
Sbjct: 63  WLGIPFYVRDLREEFSREVAGMTVESYARAETPNPCIACNHRVRIPALLRLADSLGIPAV 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY+R ++ VGD    R  +    D  RDQSY L+  T + L  L FPLG++ KE+VR
Sbjct: 123 ATGHYVR-KVRVGD----RWYLAESRDGRRDQSYALYRLTSEDLERLEFPLGELDKETVR 177

Query: 202 DLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
             AR  GL +ADK+ S D+CF +  G   ++V          G ++  +G+++GRH GI 
Sbjct: 178 QRARAAGLPVADKAASVDLCFAKTAGGVGNLVAAARPETGKPGPLLDEHGRVVGRHPGIA 237

Query: 261 NYTIGQRRGLGV--AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
             TIGQR GL     + E  +V  +D  +  V V PR  L    + LR+  W G+     
Sbjct: 238 YVTIGQRSGLQWDKTVPERRYVASIDPATRTVAVAPRARLLTRSVTLRDPIWHGEP---- 293

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
                 +   +IR       V      DG  V+F      +A GQA V Y       RVL
Sbjct: 294 ----PKRAQARIRYQGPRFEVTC----DGERVEFLDPGPPLAPGQAVVLYDG----PRVL 341

Query: 379 GGGIISGSKR 388
           GGG  +  +R
Sbjct: 342 GGGTAASVER 351


>gi|330466187|ref|YP_004403930.1| tRNA-specific 2-thiouridylase MnmA [Verrucosispora maris AB-18-032]
 gi|328809158|gb|AEB43330.1| tRNA-specific 2-thiouridylase MnmA [Verrucosispora maris AB-18-032]
          Length = 351

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 140/365 (38%), Positives = 193/365 (52%), Gaps = 22/365 (6%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84
           MSGGVDS+V AA   + G+DV GV L L  + + + R G   CC  +D  DARR  D + 
Sbjct: 1   MSGGVDSAVAAARAVQAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRAADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +  YV+D  +RF   V+  F + YAAG TP PC+ CN  +KF+ +L     LG D + TG
Sbjct: 60  IPFYVWDMADRFHADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H+ R    +G DG    ++ R +D  +DQSY L   T++QL    FPLGD  K  VR  A
Sbjct: 120 HHAR----LGPDG----LLRRSVDEAKDQSYVLAVLTREQLDRSMFPLGDSTKAQVRQEA 171

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263
            E GL +ADK DS DICF+  G     + +        GD+V    G ++G+H G   YT
Sbjct: 172 AERGLAVADKPDSHDICFIADGDTRGFLAQRLGES--PGDVVDATTGAVVGQHAGAYAYT 229

Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
           IGQRRGL +      G P +V+ +   ++ V VGP E+LEV  +      W G    E  
Sbjct: 230 IGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALEVSTVSATRPVWTGGARPEQP 289

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
           +    +C V++R+    VP  V  + D ++ D  +   GVA+GQA V Y  D     VLG
Sbjct: 290 I----ECEVQLRAHGVVVPAVVTVDGDRLHADLRRPVRGVAAGQAIVAYRPDPAGDIVLG 345

Query: 380 GGIIS 384
              I+
Sbjct: 346 SATIT 350


>gi|300783583|ref|YP_003763874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Amycolatopsis mediterranei U32]
 gi|299793097|gb|ADJ43472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Amycolatopsis mediterranei U32]
          Length = 363

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 142/375 (37%), Positives = 192/375 (51%), Gaps = 20/375 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV+GV L L +++  + R GS  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  Y++D+ ERF   V+  F   YAAG TP PCV CN  +KF  LL     LG 
Sbjct: 60  AADILGIPFYIWDFAERFTEEVVETFVGEYAAGRTPNPCVTCNEKIKFEALLEKAMALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R  +  G        + R  D  +DQSY L + T  QL    FPLGD  K 
Sbjct: 120 DAVATGHYARLTVVDG-----VPELRRSADSGKDQSYVLASLTPDQLSHAMFPLGDSWKT 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR  A   GL +A+K DS DICF+  G     ++         G++V    G +LGRH 
Sbjct: 175 DVRAEAERRGLSVANKPDSHDICFIPDGDTKKFLENRLGQ--RPGELVDAETGAVLGRHT 232

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G+  +T+GQR+GLG+      G P +V+ L+  S  V VG    L V  I      W   
Sbjct: 233 GVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGSVKVGSVADLGVKVIEADRATWPSG 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS- 372
                 + +  +C V++R+    V      +DD + V   +   GVA GQ  V Y  D  
Sbjct: 293 R----PLTEPTECVVQVRAHGGIVDAVADVDDDTMTVHLREPLRGVAPGQVVVLYRPDPG 348

Query: 373 NEARVLGGGIISGSK 387
           +   VLG   ISG++
Sbjct: 349 DGDVVLGSAKISGTR 363


>gi|324518702|gb|ADY47178.1| tRNA-specific 2-thiouridylase 1 [Ascaris suum]
          Length = 382

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 186/381 (48%), Gaps = 32/381 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV  A+SGGVDS+V A LLKR+G+DV+GV +  ++  +  +    C   +D  DAR+VC 
Sbjct: 7   RVACALSGGVDSAVAALLLKRNGFDVVGVYMVNWD--QVEEGVNDCPRTKDEADARKVCV 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +  +V D+   + N V +    +Y  G T +  V CNR VKF  L     ++L  D 
Sbjct: 65  RLGIEFHVVDFTREYWNDVFMNMLENYRRGLTVVSDVMCNRIVKFDHLHRYAFQKLCVDA 124

Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGH+ R+ L  GD  +RR +     +    D  +DQ+YFL   TQ+QL    FP+G M
Sbjct: 125 VATGHFARTNL--GDFLERRSMTNVARLLMSADPLKDQTYFLSTLTQKQLRRSMFPVGSM 182

Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN-GQI 252
            K  VR LA    L ++ +K +S  ICF+ + K FD  + +      + G I +++ G++
Sbjct: 183 TKPQVRQLAAGANLTEVLNKPESMGICFIGKRKSFDSFLDQYIE--PVSGLIRNVDTGRV 240

Query: 253 LGRHNGIINYTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
           +G H+GI ++T+G+R  L    +      FV   D  S  V          L      + 
Sbjct: 241 IGEHSGIHHFTLGKRIRLPPEVIQSPLGFFVASTDFASQTVWACEGSLHPLLFATEFVVS 300

Query: 307 EINWLGDGLF--EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363
           E  W+ +      ++V+  F+C      +       + R ++G + V  +      A GQ
Sbjct: 301 EPEWIAESPLMKSESVLVDFRCQ----RTHPAFECVLSRLENGFLKVVPKNPIRAAAPGQ 356

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
            CVFY SD      LG G I 
Sbjct: 357 TCVFYLSD----ECLGSGRIE 373


>gi|257069046|ref|YP_003155301.1| tRNA-specific 2-thiouridylase MnmA [Brachybacterium faecium DSM
           4810]
 gi|256559864|gb|ACU85711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brachybacterium faecium DSM 4810]
          Length = 385

 Score =  351 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 188/398 (47%), Gaps = 48/398 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           M+V+ AMSGGVDS+V AA     G++V+GV + L  SR  +      CC  +D  DARR 
Sbjct: 1   MKVLAAMSGGVDSAVAAARAAEAGHEVVGVHMALSKSRDQTRSGSRGCCTVEDASDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D I + +YV+D  + F + V+  F + YAAG TP PCV CN  +KF+ LL     LG D
Sbjct: 61  ADRIGIPYYVWDLSDDFHDLVVEDFLAEYAAGRTPNPCVRCNERIKFASLLERATLLGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198
            + TGHY   R    D       + R  ++ +DQSY L     + +    FPLG+   KE
Sbjct: 121 AVCTGHYASIRT---DGPGGAPSLHRSRNMAKDQSYVLAVMGPEAVGRSLFPLGEYETKE 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  AR  GL ++ K DS DICFV  G     ++R        G+++  +G +LG H G
Sbjct: 178 EVRAEARSRGLGVSTKPDSYDICFVADGDTRGFLERHLGES--PGEVLDEHGTVLGTHRG 235

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +TIGQR+GLG+      G P +VV +D +S +V++G  E L    +   ++      
Sbjct: 236 THGFTIGQRKGLGIQQPAPDGAPRYVVDIDPSSRQVVIGAAELLSTRELVAGDV------ 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV---------------------------QRNDDG 347
           +  + +  G +   +IR+  + VP  +                              D  
Sbjct: 290 ISFEPLEVGRQVHAQIRAHGEAVPARILEVPATSAAGPAAGVPASAVPDSADPAPAADGS 349

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + V+      GVA GQ  V Y +D    RVL    +  
Sbjct: 350 LRVELSTPIRGVAPGQTLVLYDAD----RVLAAATLER 383


>gi|198275614|ref|ZP_03208145.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
 gi|198271243|gb|EDY95513.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
          Length = 368

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 173/377 (45%), Gaps = 22/377 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L    KDM V   +SGGVDS+VV  LL   G+      +++      +    +C A +D+
Sbjct: 6   LPLKKKDMNVAALISGGVDSAVVVHLLCEQGHKPDLFYIKI---GMDTDDGLTCTAEEDI 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A        +S ++ D ++ + + V+         G TP P V CN+ +KF       
Sbjct: 63  ELASATARKYGLSFHIVDLQQAYWDNVVAYTVDRVRRGLTPNPDVMCNKLIKFGCFDREA 122

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            Q G D +ATGHY  +      D      +    D  +DQ+ FL      Q+  L FPLG
Sbjct: 123 GQ-GYDKIATGHYASTL-----DIDGYTWLATAKDPVKDQTDFLAQIDYLQVSRLMFPLG 176

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252
              KE VRD+A +  L  A + DSQ ICF+ +  Y D ++R        G +V L  G++
Sbjct: 177 GFLKEEVRDMAVKASLPSARRKDSQGICFLGKINYNDFIRRFLGE--RPGPVVELETGKV 234

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREIN 309
           +G+H G   +TIGQR+GLG+  G P FVV  +   + + V      E    H   +++ +
Sbjct: 235 IGQHRGYWFHTIGQRKGLGLGGG-PWFVVDKNVEENIIYVSHGYDTEKQFGHFFCVKDFH 293

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           ++    +++   +      KIR +       V+  +DG ++V  E+   G+A GQ  V Y
Sbjct: 294 FITLNPWKEQETE---ICFKIRHTDTFQTGKVRFAEDGTLHVSSEEPIQGIAPGQFGVIY 350

Query: 369 TSDSNEARVLGGGIISG 385
             D+     +G G I  
Sbjct: 351 DKDAR--LCIGSGEIRA 365


>gi|152965276|ref|YP_001361060.1| tRNA-specific 2-thiouridylase MnmA [Kineococcus radiotolerans
           SRS30216]
 gi|151359793|gb|ABS02796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Kineococcus radiotolerans SRS30216]
          Length = 359

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 131/354 (37%), Positives = 174/354 (49%), Gaps = 27/354 (7%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
           G++V+GV + L N    + R GS  CC  +D  DARR  D + +  YV+D  E F   V+
Sbjct: 18  GHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARRAADLLGIPFYVWDLSEDFVEDVV 76

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             F + YAAG TP PCV CN  +KF+ LL     LG D +ATGHY R     G DG  R 
Sbjct: 77  ADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGFDAVATGHYARV--VTGPDG--RA 132

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDI 220
            + R  D  +DQSY L      Q+    FPLGD   K  VR  A   GL +A K DS DI
Sbjct: 133 ELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTKAEVRAEAERRGLPVASKPDSHDI 192

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV----AMGE 276
           CF+  G     +      +   G++V  +G++LG H G   YT+GQR+GLG+    A G 
Sbjct: 193 CFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHTGTYGYTVGQRKGLGISRPAADGR 250

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V+ ++     V VGP E L V  +   E  W       DA V   +  V++R+  +P
Sbjct: 251 PRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW-----NADAPVGPVEVHVQVRAHGEP 305

Query: 337 VPVFVQR----NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           VP   +     +D  + V       GVA GQ    Y       RVLG   ISG+
Sbjct: 306 VPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYRG----TRVLGSATISGT 355


>gi|219684476|ref|ZP_03539420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii PBr]
 gi|219672465|gb|EED29518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii PBr]
          Length = 355

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 185/369 (50%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINEQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY R ++      +++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYARIQIK-----EKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+IV    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIVEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINGMP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +    + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 SD---FENFK--IKIRHGEKKYSCKLRLITNNLIEICLNKKDHGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|19705225|ref|NP_602720.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81479885|sp|Q8R5Z5|MNMA2_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|19713176|gb|AAL94019.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 343

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 188/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIG+TL  +    +          +D+ D ++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGITLNQHLEENS----------KDIEDTKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y +G+TP PC+ C+  +KF  L  +  +  A+ 
Sbjct: 52  DKLGIIHEVVNIRKDFENIVIKYFLEGYNSGKTPSPCIICDDEIKFKILFDIADKYNAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL D  K+ +
Sbjct: 112 VATGHYTSVEYS---EVFSKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++ L++ DK DSQ +CF ++G Y + +K       + G+ +  NG ILG+H G  
Sbjct: 169 REIALKIDLEVHDKKDSQGVCFAKEG-YKEFLKENLRDEIVRGNFIDKNGNILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L + ++ L           E   
Sbjct: 228 LYTIGQRRGLGINLSKPVFITEIKAQTNDIVLGEFSELFIDKVELIN----SKFSVEYEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ + +Y  + +     A GQ  V FY        V+G
Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|302828090|ref|XP_002945612.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
           nagariensis]
 gi|300268427|gb|EFJ52607.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
           nagariensis]
          Length = 402

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 167/381 (43%), Gaps = 24/381 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDSS+   LL+  G+      LQ++         G+C   +D+  AR+VC++
Sbjct: 7   VAVLLSGGVDSSLALRLLRAAGHTCHAFYLQIWFQEDFRNFWGACPWEEDLQYARQVCES 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA--D 139
           + V   V      + + V+        AG TP P + CN  VKF        +  GA  D
Sbjct: 67  LGVPLEVVPLTTEYWDRVVSGSVEEIRAGRTPNPDMWCNSRVKFGAFYDYLDRTYGAAFD 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY R              +    D  +DQ+YFL   + +QL  + FPLG + K  
Sbjct: 127 RVASGHYARVERVPRRSSPAEVRLLLTPDAVKDQTYFLANLSPRQLSRVMFPLGCLTKSQ 186

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA    L   ++ DSQ ICF+ + K+ + V+         G I+    GQ LG H G
Sbjct: 187 VRKLAAAADLANKNRKDSQGICFLGKVKFHEFVREHLGE--WPGPILEAETGQPLGLHQG 244

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315
              YT+GQR G+ +  G P +VV  D   + V+V         + +       NWL    
Sbjct: 245 YWFYTVGQRGGIKLPGG-PWYVVAKDTLRNAVLVSRQYYDADKQRNTFTCGPFNWLDAAT 303

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVY-------VDFEKSEVGVASGQAC 365
             D        FVK+R         ++ +D   DG Y       V   +++ G+A+GQ  
Sbjct: 304 RPDPDPRAGPLFVKVRHGPSMYCCELRLHDARGDGSYGNDSYGTVVLAQNDQGLAAGQYA 363

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           VFY       R LG  +I  +
Sbjct: 364 VFYQD----GRCLGCAVIQET 380


>gi|322378861|ref|ZP_08053278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS1]
 gi|322379966|ref|ZP_08054241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS5]
 gi|321147605|gb|EFX42230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS5]
 gi|321148671|gb|EFX43154.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter suis HS1]
          Length = 345

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 186/371 (50%), Gaps = 32/371 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V MSGGVDSS  A LLK+ G+D++G+ L+L+   +             + + + V 
Sbjct: 1   MKIAVLMSGGVDSSYSAYLLKQAGHDLLGLYLKLHGKEE--------KHAFYIKNCQEVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+   V D +E F+  V   F  +Y  G+TP PC  CN  +KF   L      G + 
Sbjct: 53  SFLNIPFEVVDLQEPFKKQVYEVFIDTYKNGQTPNPCALCNPLMKFGLGLEFALDRGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       D +    +    DL +DQSYFL+A  Q  +  L FPLG + K  +
Sbjct: 113 VATGHYARLM-----DLEGVLRIQEAFDLSKDQSYFLYALPQHAIDALMFPLGGLLKSEI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  A E    +G D+    +SQ+ICFV+ G Y D +K+    +  +G + +L G+++G H
Sbjct: 168 KPKALEAMPFLG-DLQTYKESQEICFVE-GSYIDTLKQHI-DVDQKGLVRNLKGEVVGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G ++YTIG+R+G  V     P FVV +   ++ +IVG +E L +  +           L
Sbjct: 225 KGYMHYTIGKRKGFTVQGAHTPHFVVGIHAKANEIIVGEKEDLAIFTLEAEN-----KSL 279

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
             +     +   VK+R    P    +  N   ++  FE+   GVA GQA V Y  D    
Sbjct: 280 PSNFKTGTY--MVKVRYRSTPTKAKISLNHQTIHATFEEPVYGVALGQALVIYEKDC--- 334

Query: 376 RVLGGGIISGS 386
            VLGGG+I+ S
Sbjct: 335 -VLGGGVITKS 344


>gi|255322034|ref|ZP_05363184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter showae RM3277]
 gi|255301138|gb|EET80405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter showae RM3277]
          Length = 338

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 206/371 (55%), Gaps = 42/371 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++++AMSGGVDS++ A +L   G++V+G  ++L+        K      +++    R C
Sbjct: 1   MKILMAMSGGVDSTMSAKMLLEAGHEVVGCYMKLH--------KKPGYHEKNIDKVARAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + ++V D +E+F   V  PF SSY  G+TP PC  CN  +KF +LL   + +G + 
Sbjct: 53  GYLGIPYHVLDLQEQFDRYVYTPFVSSYKEGKTPNPCALCNHFIKFGELLKFAKSIGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHYIR +     DG  R       D  +DQSYF+    ++ + D+ FPLGD  K+ +
Sbjct: 113 LATGHYIRVQ-----DGLIRV----AADPSKDQSYFVAQVPKEIIADMIFPLGDKFKKDI 163

Query: 201 RDLA------REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++LA      RE G    ++++S +ICFV+   Y +V+ + +    L GD+V   G+++G
Sbjct: 164 KELAKSLPSFREYG----EQAESSEICFVEDT-YIEVLNK-HYETDLPGDVVDSAGRVIG 217

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           RH+G ++YTIG+RRG  V    EP FV+ +D  ++R++VGP+E LE  +I +  +N   D
Sbjct: 218 RHSGYMHYTIGKRRGFEVFGAHEPHFVLAIDAQNNRIVVGPKEELERGKIAVNSLNLFVD 277

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C VK+R     +   V+  D G   V+ ++S  GVASGQ  VFY  + 
Sbjct: 278 E-------SEFDCDVKVRYRSIGLNAHVKVLDGGTAEVELKQSAFGVASGQLAVFYRGE- 329

Query: 373 NEARVLGGGII 383
               V+G G I
Sbjct: 330 ---LVIGSGFI 337


>gi|238878196|gb|EEQ41834.1| hypothetical protein CAWG_00021 [Candida albicans WO-1]
          Length = 422

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 40/396 (10%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCC 68
           N+        D  ++VAMS GVDSSV AAL K   Y +V G+ +  ++       + + C
Sbjct: 47  NTYTQPTPKPDDHIIVAMSSGVDSSVCAALYKD--YPNVHGLYMANWS-------QSATC 97

Query: 69  AGQDVYDARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
             +D  D +RVC  + +S     ++E  +   V +P    Y  G TP P + CN+ VKF 
Sbjct: 98  TERDWKDVQRVCQDLGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFG 157

Query: 128 DLLSVTRQL----GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            L+    +     G D  L TGHY R   +   +      + R +   +DQSY+L +  Q
Sbjct: 158 KLIDYLHKKYDGTGKDWWLVTGHYARIMKH---NETGEYHLLRGLSQRKDQSYYLSSIPQ 214

Query: 183 QQLCDLRFPLGDMKKESVRDLAR-EMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGI 239
             L  +  P+G   K  +R+LA  +  L  A K DSQ +CFV  QQ  + + +       
Sbjct: 215 SSLSKILLPIGHYIKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREFLNDYIPE- 273

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGP 294
              GDI+  +G++ G+H G+ + TIGQ+  + +   +P      FV   +   +++I+  
Sbjct: 274 -NPGDIITEDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVK 332

Query: 295 RES---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYV 350
                 L    + L ++ WL     ++ V+       +  S    +PV  +  + D + V
Sbjct: 333 GHDNPKLFKQTVELTQLEWLH---PKEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTV 389

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           + E     +A GQA V Y  +    +VLGGG+I+ +
Sbjct: 390 ELETPVRALAPGQAGVLYKGN----QVLGGGMINRT 421


>gi|68482055|ref|XP_715045.1| hypothetical protein CaO19.7245 [Candida albicans SC5314]
 gi|46436648|gb|EAK96007.1| hypothetical protein CaO19.7245 [Candida albicans SC5314]
          Length = 423

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 40/396 (10%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCC 68
           N+        D  ++VAMS GVDSSV AAL K   Y +V G+ +  ++       + + C
Sbjct: 48  NTYTQPTPKPDDHIIVAMSSGVDSSVCAALYKD--YPNVHGLYMANWS-------QSATC 98

Query: 69  AGQDVYDARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
             +D  D +RVC  + +S     ++E  +   V +P    Y  G TP P + CN+ VKF 
Sbjct: 99  TERDWKDVQRVCQDLGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFG 158

Query: 128 DLLSVTRQL----GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            L+    +     G D  L TGHY R   +   +      + R +   +DQSY+L +  Q
Sbjct: 159 KLIDYLHKKYDGTGKDWWLVTGHYARIMKH---NETGEYHLLRGLSQRKDQSYYLSSIPQ 215

Query: 183 QQLCDLRFPLGDMKKESVRDLAR-EMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGI 239
             L  +  P+G   K  +R+LA  +  L  A K DSQ +CFV  QQ  + + +       
Sbjct: 216 SSLSKILLPIGHYIKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREFLNDYIPE- 274

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGP 294
              GDI+  +G++ G+H G+ + TIGQ+  + +   +P      FV   +   +++I+  
Sbjct: 275 -NPGDIITEDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVK 333

Query: 295 RES---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYV 350
                 L    + L ++ WL     ++ V+       +  S    +PV  +  + D + V
Sbjct: 334 GHDNPKLFKQTVELTQLEWLH---PKEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTV 390

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           + E     +A GQA V Y  +    +VLGGG+I+ +
Sbjct: 391 ELETPVRALAPGQAGVLYKGN----QVLGGGMINRT 422


>gi|198426982|ref|XP_002121363.1| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 [Ciona intestinalis]
          Length = 437

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 175/395 (44%), Gaps = 22/395 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ A+SGGVDS+V A LLKR G +V+GV ++ ++        G C   +D   A RVC 
Sbjct: 3   KVICAISGGVDSAVAALLLKRRGLNVVGVFMRNWDLEDEV---GQCSVQEDATYATRVCR 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
            +++  Y  +  + +   V +P    Y  G TP P + CN+ VKFS   +  +   G  V
Sbjct: 60  ALDIPFYEVNLVKEYWTNVFMPMVDQYEMGNTPNPDILCNQLVKFSAFHNKCSSMFGNVV 119

Query: 141 LATGHYIRSRLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +ATGHY R+ L              + + + +D  +DQ++FL    +  L    FPLG +
Sbjct: 120 IATGHYARTTLNDRVLTAKVPHTAEQRLLKAVDPFKDQTFFLHKVDRTALLRSYFPLGGI 179

Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQIL 253
            K  V+++A    +  +  + +S  ICF+ + ++ + +K         G  + +  G ++
Sbjct: 180 FKSKVKEIAAASEISFVLKRKESAGICFIGRREFSNFIKNYI--SPKPGQFICYETGNVI 237

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           G H+G  +YT+GQR  +G  +     V++ +     V+V P     +L    +     +W
Sbjct: 238 GNHDGYFSYTVGQRSLIG-GLRISYAVLHRNSKDGNVLVVPGLNHPALYRKSLVSGPAHW 296

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369
           +              C+ +       VP  V    ++ + +  +     +  GQ  V YT
Sbjct: 297 IAGEPALLREGKPLNCYFRFCHRNSLVPCTVHQLENERLLIILQHPLRAMTVGQDAVLYT 356

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404
            D      LGG  I     S    +S   ++ D F
Sbjct: 357 ED----ECLGGAQIDDVGPSMYESQSQDKIVFDTF 387


>gi|258651678|ref|YP_003200834.1| tRNA-specific 2-thiouridylase MnmA [Nakamurella multipartita DSM
           44233]
 gi|258554903|gb|ACV77845.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Nakamurella multipartita DSM 44233]
          Length = 368

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 193/382 (50%), Gaps = 32/382 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AAL    G++V GV + L +    + R GS  CC  +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVEAGHEVTGVHMAL-SRTPGTLRTGSRGCCTVEDAFDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VCD + +  YV+D+ E F + V+  F S YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCDLLGIPFYVWDFSEDFLDDVVADFLSEYAAGRTPNPCLRCNEKIKFAALLDRAIALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGHY R       DG     + R +DL +DQSY L   T  QL    FPLG++ K 
Sbjct: 120 DAVCTGHYARLI-----DG----ALYRSVDLAKDQSYVLAVLTPDQLAHSMFPLGELTKP 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR  A+  G  +A K DS DICF+  G     +  ++   A  G +V    G+ +  H+
Sbjct: 171 QVRAQAQARGFAVAAKPDSYDICFIPDGDTHGYL--VDKLGARPGAVVDATTGEQIAEHD 228

Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YTIGQR+GLG+    A G P +V+ ++  +  V VGP   L+V  +    + + G 
Sbjct: 229 GFFAYTIGQRKGLGLSRPAADGRPRYVLGIEPTTRTVTVGPASGLDVRLVVADRVVFPGG 288

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY----- 368
              +  +    +   ++R+    V       D  + +  +++  GVA GQ  V Y     
Sbjct: 289 RRPDFPI----RVQAQLRAHGGTVGGSADLVDGTLRLSLDQAARGVAPGQTMVLYGGATP 344

Query: 369 ----TSDSNEARVLGGGIISGS 386
                  + +  VL  G I  +
Sbjct: 345 DAASAGPAADQYVLAAGTIVRT 366


>gi|302524933|ref|ZP_07277275.1| tRNA methyl transferase [Streptomyces sp. AA4]
 gi|302433828|gb|EFL05644.1| tRNA methyl transferase [Streptomyces sp. AA4]
          Length = 361

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 128/353 (36%), Positives = 178/353 (50%), Gaps = 21/353 (5%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
           G+DV+GV L L +++  + R GS  CC  +D +DARR  D + +  Y++D+ ERF   V+
Sbjct: 21  GHDVVGVHLAL-SAQPGTLRTGSRGCCTIEDSHDARRAADILGIPFYIWDFAERFTEEVV 79

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             F   YAAG TP PCV CN  +KF  LL     LG D +ATGHY R     G+      
Sbjct: 80  ETFVGEYAAGRTPNPCVTCNEKIKFEALLEKALALGFDAVATGHYARLATVDGE-----L 134

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
            + R  D  +DQSY L +   +QL    FPLGD  K  VR  A + GL +A K DS DIC
Sbjct: 135 ELRRSADEGKDQSYVLASLQPEQLRHAMFPLGDSWKSDVRAEAEQRGLSVARKPDSHDIC 194

Query: 222 FVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLGV----AMGE 276
           F+  G     +++        G++V    G +LGRH G+  +T+GQR+GLG+    A G 
Sbjct: 195 FIPDGDTKKFLEKRLGE--RPGELVDAETGAVLGRHTGVHGFTVGQRKGLGIDAPAADGR 252

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V+ L+  S  V VG    L V  I      W      +       +C V++R+    
Sbjct: 253 PRYVLSLEPVSGTVKVGSSADLGVQAIDADRAIWPSGRALDGPT----ECTVQVRAHGGI 308

Query: 337 VPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY-TSDSNEARVLGGGIISGSK 387
                + ++DG V +   +S  GVA GQ  V Y   D     VLG   ISG++
Sbjct: 309 ADAVAEVDEDGRVSIQLRESLRGVAPGQVVVLYRRDDQAGDLVLGSAKISGTR 361


>gi|296329079|ref|ZP_06871584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153798|gb|EFG94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 343

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 188/365 (51%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +               +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEE----------NLKDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y++G+TP PCV C+  +KF  L  +  +  A+ 
Sbjct: 52  DKLGIIHEVVNIRKDFENIVIKYFLDGYSSGKTPSPCVICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYS---EVFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYSKQGI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ DK DSQ +CF ++G Y + +K       + G+ V  +G ILG+H G  
Sbjct: 169 REIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+   +P+F+  +   ++ +++G    L   ++ L    +      E   
Sbjct: 228 LYTIGQRRGLGINFSKPVFITEIKAQTNEIVLGEFSELFTDKVELINCKF----SVEYKK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ + +Y  + +     + GQ  V FY        V+G
Sbjct: 284 IEKLELLARPRFSSTGFYGKLMKDKEKIYFKYNEENAHNSKGQHIVFFYDG-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|254302170|ref|ZP_04969528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322362|gb|EDK87612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 343

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 190/365 (52%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ +SGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGISGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +SH V +  + F N VI  F   Y+ G TP PCV C+  +KF  L  +  +  A+ 
Sbjct: 52  NKLGISHEVINIRKDFENTVIKYFLDGYSTGITPSPCVICDDEIKFKILFDIADKYKAEY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+  +  +L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYS---EFFSKYLLKSVHSIIKDQSYMLYRLSPTKLERLIFPLKPYSKQKI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ +K DSQ +CF ++G Y + +K       + G+ V  +G ILG+H G  
Sbjct: 169 REIALKIGLEVYNKKDSQGVCFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + +P+F+  +   ++ +++G    L   ++ L    +      E   
Sbjct: 228 LYTIGQRRGLGINLSKPVFITEIIPQTNEIVLGEFLELFTDKVELINFKF----SVEYEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           ++  +   + R S       + ++ D +Y  + +     A GQ  V FY +      V+G
Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDRDKIYFKYNEENAHNAKGQHIVFFYDN-----FVVG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|218131789|ref|ZP_03460593.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697]
 gi|217986092|gb|EEC52431.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697]
          Length = 357

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 115/358 (32%), Positives = 169/358 (47%), Gaps = 23/358 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A  L   GY+V GVT + Y     ++          + DAR
Sbjct: 9   KSKERVLLGMSGGTDSSVAAMRLLDAGYEVTGVTFRFYEVDGRTEY---------LDDAR 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D +E FR  +I  F   Y AG TP+PC  CN  +K++ L  +  + G
Sbjct: 60  ALAARLGIEHVTYDAQELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWALLARIADEKG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY R  L        +  +    D ++DQ++FL+   Q  L  +  P+GD+ K
Sbjct: 120 IYWISTGHYARKALL-----GEQCYIAPASDRDKDQTFFLWGLKQDILQRMLLPMGDVTK 174

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
           E  R  A   G   +A K DS  +CF     Y   +KR      L G    +   G+ILG
Sbjct: 175 EEARAYAAGRGFARVASKKDSIGVCFCPL-DYRSFLKREVPAERLPGKGLFIGEKGEILG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           RH G   YTIGQRRGLG+ +   +FV  +   ++ V++ P  SL    + L++ N +   
Sbjct: 234 RHEGYPFYTIGQRRGLGIHLNRAVFVKEVRTATNEVVLAPLASLYKDEMLLKDWNLVS-- 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
             E  V+      VKIR  +      V    DG + V   +    +A GQA  FY +D
Sbjct: 292 --EQRVLGMETVIVKIRYRKQANRCRVALMADGCLRVSLLEPLEAIAPGQAAAFYDAD 347


>gi|189466604|ref|ZP_03015389.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM
           17393]
 gi|189434868|gb|EDV03853.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM
           17393]
          Length = 353

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 161/367 (43%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++            C A +D   A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GMDGAEFMDCSAEEDWEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   + D +  +   V          G TP P V CNR +KF        +   D 
Sbjct: 58  RRYGLPLEMIDLQNEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGK-EFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 117 TATGHYATTVSKDG-----KIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259
           RD+AR  GL  A + DSQ ICF+ +  Y D V+        EGDIV   +G+ +G H G 
Sbjct: 172 RDIARTAGLPTARRRDSQGICFLGKINYNDFVRHFLGE--REGDIVEWESGKKIGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FV+  D   + + V      +        + + +++ +  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVIRKDIEENVLYVSRGYDTQWQYGREFRMHDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           ++A  +      KIR + + +   + +      +    +  G+A GQ  V Y  D     
Sbjct: 289 QEA--EEVDVTFKIRHTPEFMKGKLVQEGGNYRIISSDNLQGIAPGQFGVVY--DEASRI 344

Query: 377 VLGGGII 383
            +G G I
Sbjct: 345 CIGSGEI 351


>gi|253583302|ref|ZP_04860500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
 gi|251833874|gb|EES62437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
          Length = 346

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 31/369 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK +GY VIGVTL  +   ++ K +        +  A+R+C
Sbjct: 4   KKVVIGMSGGVDSSVAAYLLKSEGYGVIGVTL-NHKKEESLKDE--------IKAAQRIC 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + + H + D EE F+  VI  F   Y+ G TP PCV C+  VK   L  +  +  AD 
Sbjct: 55  HFLGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDEKVKMKILFEIADKENADF 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +  +  ++    D  +DQSY L+     ++  L FPL   +K+ +
Sbjct: 115 VATGHYSSVEYS---EEFKTSLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQI 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           RD+A+ +GL++ +K DSQ ICF ++G Y + +KR       +G  +  NG+ILG H G  
Sbjct: 172 RDIAKNIGLEVYNKKDSQGICFAKEG-YIEFLKRNLGNKIKKGKYIDKNGKILGEHEGYQ 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW---LGDGLFE 317
            YTIGQRRGLG+ +    F+  +DK  + + +G  E L   R+ L++      + D L +
Sbjct: 231 LYTIGQRRGLGLKLPRAYFITKIDKEKNEITIGEYEELYKKRVELKKYKLAVKITDILNK 290

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK--SEVGVASGQACVFYTSDSNEA 375
           + +          R S       V   ++ ++ +F++   +     GQ  V Y     + 
Sbjct: 291 NIIGRP-------RFSSFGTSGKVLFENEKLFFEFDEETPQTA--PGQHLVLY----YKN 337

Query: 376 RVLGGGIIS 384
            VLGGGIIS
Sbjct: 338 LVLGGGIIS 346


>gi|262066347|ref|ZP_06025959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379911|gb|EFE87429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 343

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 186/365 (50%), Gaps = 24/365 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSSV A LLK  GY+VIGVTL  +    +          +D+ DA++VC
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEESS----------KDIEDAKKVC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H V +  + F N VI  F   Y +G+TP PCV C+  +KF  L  V  +  AD 
Sbjct: 52  DRLGIIHEVVNIRKNFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEVANKYKADY 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY         +   + ++     + +DQSY L+    ++L  L FPL    K+ +
Sbjct: 112 VATGHYTSVEYS---ETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEI 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++A ++GL++ DK DSQ +CF ++G Y + +K       ++G+ +   G+ILG+H G  
Sbjct: 169 REIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKEGKILGQHEGYQ 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGLG+ + + +F+  +   ++ +++G    L    I L    +      E   
Sbjct: 228 LYTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIKLTNYKF----AVEFEK 283

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379
           +       + R S       + +N D +   + +     A GQ  V FY +      V+G
Sbjct: 284 IKDLNLLARPRFSSTGFYGKLIKNSDKICFKYNERNAHNAKGQHVVFFYDN-----FVIG 338

Query: 380 GGIIS 384
           GG I 
Sbjct: 339 GGEIK 343


>gi|51598937|ref|YP_073125.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii PBi]
 gi|73920033|sp|Q660I8|MNMA_BORGA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51573508|gb|AAU07533.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 355

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 186/369 (50%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSS+    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  N+ + + ++++ + N V++        G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNIPYEIINFQKEYYNKVVIYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINEQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY R ++      +++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYARIQIK-----EKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+IV    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIVEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGMP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +    + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 SD---FENFK--IKIRHGEKKYSCKLRLITNNLIEIFLNKKDHGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|149001781|ref|ZP_01826754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
 gi|147760239|gb|EDK67228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
          Length = 266

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 130/238 (54%), Gaps = 9/238 (3%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +    RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY R    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           K  VR LA E GL  A K DS  ICF+ +  + + +       A  G ++ ++G+ +G
Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMG 231


>gi|329954341|ref|ZP_08295433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328527609|gb|EGF54602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 365

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 170/367 (46%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++    K       C A +D+  A  V 
Sbjct: 1   MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GKDDADYMDCSAEEDLEMASAVA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF            D 
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIEKVRRGFTPNPDVMCNKLIKFGCF-EQQVGKDFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  + L  G     +  +   +D  +DQ+ FL      Q+  L FPLG + K  V
Sbjct: 117 TATGHYATTVLRNG-----KTWLGTALDPIKDQTDFLAQIDYLQVSKLMFPLGGLMKREV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A +  L  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ILG H G 
Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGE--KEGRIVELETGKILGAHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESL-EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D + + + V  G    L   H   +++ +++ +  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVRKDTDENVIYVSRGYDTELQYGHEFGMQDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E  V +      KIR + + +   + R++ G  +  E+   G+A GQ  V Y  D     
Sbjct: 289 E-GVKEAIPVTFKIRHTPEFIRGKLLRDETGCLIVSEEKLQGIAPGQFGVVY--DEAAKL 345

Query: 377 VLGGGII 383
            +G G I
Sbjct: 346 CIGSGEI 352


>gi|303236987|ref|ZP_07323562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella disiens FB035-09AN]
 gi|302482852|gb|EFL45872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella disiens FB035-09AN]
          Length = 376

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 168/385 (43%), Gaps = 35/385 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV     R G       +++       K +  C + +DV  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYEFARLGLTPDCFYIRI---GPEEKEEWDCNSEEDVEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V      +  V D  + + + V         AG TP P V CNR +KF        + G 
Sbjct: 64  VARRFGCTLKVIDCHKEYWSQVTKYTMDKVRAGFTPNPDVMCNRMIKFGAFHE---KCGK 120

Query: 139 DV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D   +ATGHY +++   G     ++ +C   D  +DQ+ FL      QL    FP+G  +
Sbjct: 121 DYDLIATGHYAQTKWIEG-----KKWLCTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYE 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255
           K  VR++A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +G+
Sbjct: 176 KNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQV--GDVIELETGKKIGQ 233

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLG 312
           H G+  +TIGQR+GLG   G P FVV  D  ++ ++V               + +++WL 
Sbjct: 234 HKGLWFHTIGQRKGLGFGGG-PWFVVKKDVANNVLLVSHGYDPQTAYKQEFKVHDLHWLT 292

Query: 313 DGLF------EDAVVDGFKCFVKIRSSQDPVPVFVQRN-------DDGVYVDFEKSEVGV 359
           +          +   +      KIR + +    +++         +    V  E+   GV
Sbjct: 293 ESPKNEVVENSEKPNNWIPIRFKIRHTPEFHKGYLEMISVEEGGKETEAMVHSEEKIHGV 352

Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384
           A GQ CV Y  +    R  G   I+
Sbjct: 353 APGQFCVIYDKE--HNRCFGSAEIT 375


>gi|298387127|ref|ZP_06996681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298260277|gb|EFI03147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 369

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 171/388 (44%), Gaps = 46/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V GVT + Y    +++          + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDSTEY---------LEDARH 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFRKQIIEYFVREYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R              +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 114 FYIATGHYVRKVKVDDTC-----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 168

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE--------------- 242
             R  A E G   +A K DS  +CF     Y   +K+                       
Sbjct: 169 EARVFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKKWLVSNCQPQVSVGQPQVSAGQTW 227

Query: 243 ------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
                 G  V   G  +  H G   YT+GQRRGLG+ +   +FV  +    + V++   +
Sbjct: 228 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 287

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
           +LE   + L++ N +      + ++      VKIR  +      V    D  ++V   + 
Sbjct: 288 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTPDNFLHVQLHEP 343

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +ASGQA  FY        +LGGGII
Sbjct: 344 LTAIASGQAAAFYKD----GLLLGGGII 367


>gi|224534479|ref|ZP_03675055.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
 gi|224514156|gb|EEF84474.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
          Length = 355

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY +V    L+++   + S   GSC   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYRIISKGYTNVKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+        +G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIKELKSGNTPSPDIFCNQRIKFGAFFEKINKQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +        ++  + +  D  +DQSYFL   +Q Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQ-----KKDKKIFLKQAKDKIKDQSYFLSHLSQNQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   ++ DSQ ICF+ + KY + +K        +G+I+    G+I+G H+G
Sbjct: 174 VRQIAKSINLPNKNRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGRIIGIHDG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWINGTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 LN---FENFK--IKIRHGEKKYSCKLKLITNNLIEIYLNKKDCGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|148272583|ref|YP_001222144.1| tRNA-specific 2-thiouridylase MnmA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|166234849|sp|A5CQU4|MNMA_CLAM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147830513|emb|CAN01448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltr [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 387

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 186/389 (47%), Gaps = 24/389 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G+DV GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SRMPGTLRTGSRGCCTIEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ +L     LG 
Sbjct: 60  AADLLGIPFYVWDFSERFAADVVDDFVAEYQAGRTPNPCMRCNERIKFAAVLEKALDLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY    +  G DG  +  + R     +DQSY L   T +Q+    FPLG    K
Sbjct: 120 DAVCTGHYA--DVLEGPDG--QPELHRAAAWAKDQSYVLGVLTAEQIAHSYFPLGSTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A+  G+ +A K DS DICF+  G     +       A  G+I+   G  +G H 
Sbjct: 176 AEVRAEAQARGIQVAQKPDSHDICFIPDGDTRGWLADRVG--AEPGEILDGEGNAIGTHQ 233

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G P FV+ +    + V+VGP+E+L +  I      W G 
Sbjct: 234 GAAAFTVGQRKGLAIGTPAPDGRPRFVLEIRPKDNTVVVGPQEALAIREIAGSSYTWAGT 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVY--VDFEKSEVGVASGQACVFYT 369
                     F C V+IR+  DPVP    V   D  V   +       GVA GQ  V Y 
Sbjct: 294 PPTR--PDQPFDCDVQIRAHADPVPARAAVSVVDGSVQLVITPRDPLHGVAPGQTAVVYA 351

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESLLS 398
                 RVLG   I  +  +       + 
Sbjct: 352 G----TRVLGQVTIDRTVSAVDDARPPMR 376


>gi|312140513|ref|YP_004007849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu
           [Rhodococcus equi 103S]
 gi|311889852|emb|CBH49169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Rhodococcus equi 103S]
          Length = 362

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 184/360 (51%), Gaps = 33/360 (9%)

Query: 44  GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
           G+DV+GV L L ++   + R GS  CC+ +D  DA+R  D + +  YV+D+ +RF+  VI
Sbjct: 14  GHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKRAADVLGIPFYVWDFADRFKEDVI 72

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             F  SYAAGETP PC+ CN  +KF+ L      LG D +ATGHY R      +DG+   
Sbjct: 73  DDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGFDAVATGHYARL-----EDGE--- 124

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
            + R +D ++DQSY L   T  QL    FP+GD  KE +R+ A   GL +A+K DS DIC
Sbjct: 125 -LRRAVDADKDQSYVLAVLTADQLSRAMFPVGDTPKEQIREEAAARGLAVANKPDSHDIC 183

Query: 222 FVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGV----AMGE 276
           F+  G     +          G +V  + G++L +H G+  +TIGQR+GLGV    A G+
Sbjct: 184 FIPSGDTRAFLGARIG--IRPGAVVDADTGEVLAQHEGVHGFTIGQRKGLGVQGPAADGQ 241

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V  ++  +  V VG    L+V  I      W      E  +    +C V++R+    
Sbjct: 242 PRYVTAIEPETGTVRVGSAARLDVWTITAERAIWTSGQAPEGPI----ECIVQVRAHGGT 297

Query: 337 VPVFVQRN----------DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                +            D G+ V   +   GVA GQA V Y  D +   V+G G I+G+
Sbjct: 298 ARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAKGQAVVLYRPDEDGDVVIGSGTIAGT 357


>gi|317474596|ref|ZP_07933870.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909277|gb|EFV30957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 357

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 168/358 (46%), Gaps = 23/358 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A  L+  GY+V GVT + Y     ++          + DAR
Sbjct: 9   KSKERVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEVDGRTEY---------LDDAR 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR  +I  F   Y AG TP+PC  CN  +K++ L  +  + G
Sbjct: 60  ALAARLGIEHVTYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWALLARIADEKG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY R  L        +  +    D ++DQ++FL+   Q  L  +  P+GD+ K
Sbjct: 120 IYWISTGHYARKALL-----GEQCYIAPASDRDKDQTFFLWGLKQDILQRMLLPMGDVTK 174

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254
           E  R  A   G   +A K DS  +CF     Y   +KR      L G    +   G+ILG
Sbjct: 175 EEARAYAAGRGFARVASKKDSIGVCFCPL-DYRSFLKREVPAGRLPGKGLFIGEKGEILG 233

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ +   +FV  +   ++ V++ P  SL    + L++ N +   
Sbjct: 234 SHEGYPFYTIGQRRGLGIHLNRAVFVKEVRTATNEVVLAPLASLYKDEMLLKDWNLVS-- 291

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371
             E  V+      VKIR  +      V    DG + V   +    +A GQA  FY +D
Sbjct: 292 --EQRVLGMETVIVKIRYRKQANHCRVALMADGCLRVSLLEPLEAIAPGQAAAFYDAD 347


>gi|241950493|ref|XP_002417969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Candida dubliniensis CD36]
 gi|223641307|emb|CAX45687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Candida dubliniensis CD36]
          Length = 424

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 116/394 (29%), Positives = 182/394 (46%), Gaps = 38/394 (9%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCC 68
           N         D  ++VAMS GVDSSV AAL K   Y +V G+ +  ++       + + C
Sbjct: 51  NKYTQPTPKPDDHIIVAMSSGVDSSVCAALFKD--YPNVHGLYMANWS-------QSATC 101

Query: 69  AGQDVYDARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
             +D  D +RVC  + +S     ++E  + + V VP    Y  G TP P + CN+ VKF 
Sbjct: 102 TERDWKDVQRVCRDLGISSCERVNFEHEYWHDVFVPMIEKYEKGLTPNPDIGCNKFVKFG 161

Query: 128 DLLSVTRQL--GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            L+    +   G D  L TGHY R   +   +      + R +   +DQSY+L +   + 
Sbjct: 162 KLIDYLHEKYDGKDWWLVTGHYARIMKH---NETGEYHLLRGLSQRKDQSYYLSSIPPRS 218

Query: 185 LCDLRFPLGDMKKESVRDLAREMG-LDIADKSDSQDICFV--QQGKYFDVVKRINAGIAL 241
           L  +  P+G   K  +R LA +   L  A K DSQ +CFV  QQ  + + +         
Sbjct: 219 LSKILLPIGHYIKPQIRKLAHDRFQLHTATKPDSQGLCFVNPQQSNFREFLNDYIPE--N 276

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGPRE 296
            GDIV  +G++ GRH G+ + TIGQ+  + +   +P      FV   +   +++I+    
Sbjct: 277 PGDIVTEDGKVWGRHKGLWHATIGQKSSVCMPQADPKYQGIWFVSDKNYEKNQIIIVKGH 336

Query: 297 S---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDF 352
               L    + L ++ WL     ++ V+       +  S    +PV  V  + D + V+ 
Sbjct: 337 DNPRLFKQTVELTQLEWL---CPKEEVIHLRGLQFQYHSLSKSIPVKRVIDSGDKLVVEL 393

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           E     +A GQA V Y  +    RVLGGG+IS +
Sbjct: 394 ETPVRALAPGQAGVLYNGN----RVLGGGMISRT 423


>gi|237753391|ref|ZP_04583871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229375658|gb|EEO25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 347

 Score =  348 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 187/372 (50%), Gaps = 36/372 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ MSGGVDSS  A LL++ GY V GV L+L++  +             V +  +  
Sbjct: 2   KKVLLLMSGGVDSSYCAYLLQKQGYLVYGVYLKLHDKEE--------KHAYFVRNIEKCA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+ + + D  E F+  V   F  SY  G TP PC  CN  VKF     +  ++G D 
Sbjct: 54  KHLNIEYSIIDERELFKEKVYDYFVESYKKGLTPNPCAMCNPFVKFGIAFDLADKMGFDY 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +     DGK      +  D+ +DQSYFLF   Q+ +  + FPLGD  KE +
Sbjct: 114 VATGHYAQIK-----DGKV----AQGADIHKDQSYFLFGLKQEWISRIIFPLGDKIKEEI 164

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + +A +    +G  +    DSQ+ICFV+   Y DV+ + +     +G+++   G ++G H
Sbjct: 165 KPIALKELSWLG-TLETYKDSQEICFVENS-YIDVLNK-HYKTESKGNVLDAQGNVIGTH 221

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +     P +V+ ++   + ++VG +E+L    +     + L    
Sbjct: 222 KGYMQYTIGKRKGFEIKGALTPHYVLKINPQDNTIVVGNKEALATKEVRATNFS-LPKEY 280

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSD 371
           F+D   +  +C VKIR         ++   +     +    ++   GVASGQA V Y   
Sbjct: 281 FKDN--NTLECEVKIRYKSHKAKARIELIKEAQKEVIVAHLQEPVYGVASGQALVLYDG- 337

Query: 372 SNEARVLGGGII 383
              ++VLGGG I
Sbjct: 338 ---SKVLGGGFI 346


>gi|224533363|ref|ZP_03673957.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|224513528|gb|EEF83885.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
          Length = 355

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    + + GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIIKKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQIK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|216263504|ref|ZP_03435499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia afzelii ACA-1]
 gi|215980348|gb|EEC21169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia afzelii ACA-1]
          Length = 355

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   GSC   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINEQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +        ++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQTK-----DKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   ++ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWINGTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +    + FK  +KIR  +      ++    + + +   K + G++ GQ  +FY +    
Sbjct: 291 SD---FENFK--IKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|111115515|ref|YP_710133.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii PKo]
 gi|122956331|sp|Q0SMH1|MNMA_BORAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110890789|gb|ABH01957.1| hypothetical protein BAPKO_0726 [Borrelia afzelii PKo]
          Length = 355

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   GSC   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINEQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +        ++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQTK-----DKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   ++ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGTHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWINGTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +    + FK  +KIR  +      ++    + + +   K + G++ GQ  +FY +    
Sbjct: 291 SD---FENFK--IKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|29348763|ref|NP_812266.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81443497|sp|Q8A2F1|MNMA2_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|29340669|gb|AAO78460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 370

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 171/388 (44%), Gaps = 46/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V GVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDSTEY---------LEDARH 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R              +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 115 FYIATGHYVRKVKVDDTC-----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE--------------- 242
             R  A E G   +A K DS  +CF     Y   +K                        
Sbjct: 170 EARAFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKMWLVSNCQPQVSVGQPQVSAGQTW 228

Query: 243 ------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
                 G  V   G  +  H G   YT+GQRRGLG+ +   +FV  +    + V++   +
Sbjct: 229 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 288

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKS 355
           +LE   + L++ N +      + ++      VKIR  +      V    D+ ++V   + 
Sbjct: 289 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTLDNFLHVQLHEP 344

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +ASGQA  FY        +LGGGII
Sbjct: 345 LTAIASGQAAAFYKD----GLLLGGGII 368


>gi|253568894|ref|ZP_04846304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6]
 gi|251840913|gb|EES68994.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6]
          Length = 369

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 171/388 (44%), Gaps = 46/388 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V GVT + Y    +++          + DAR 
Sbjct: 3   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDSTEY---------LEDARH 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E FR  +I  F   Y  G TP+PC  CN  +K+  L  +  ++G 
Sbjct: 54  LAERLGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY+R              +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 114 FYIATGHYVRKVKVDDTC-----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 168

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE--------------- 242
             R  A E G   +A K DS  +CF     Y   +K                        
Sbjct: 169 EARAFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKMWLVSNCQPQVSVGQPQVSAGQTW 227

Query: 243 ------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296
                 G  V   G  +  H G   YT+GQRRGLG+ +   +FV  +    + V++   +
Sbjct: 228 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 287

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKS 355
           +LE   + L++ N +      + ++      VKIR  +      V    D+ ++V   + 
Sbjct: 288 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTLDNFLHVQLHEP 343

Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383
              +ASGQA  FY        +LGGGII
Sbjct: 344 LTAIASGQAAAFYKD----GLLLGGGII 367


>gi|317011534|gb|ADU85281.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           SouthAfrica7]
          Length = 342

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 32/368 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D+++ F++AV   F ++Y  G+TP PC  CN  +KF   L    +LG + 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDAFIAAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +        +   +   +D  +DQSYFL+A   + +  L FPLGD+ K+ +
Sbjct: 113 IATGHYARIKEI-----DQVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + LA      +G  +    +SQ+ICFV++  Y D +K+    +  EG + +L G+I+G H
Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    EP FVV +D   + ++VG +E L  H +  +  + + D  
Sbjct: 225 KGYVQYTIGKRKGFSVKGALEPHFVVQIDAKKNELVVGKKEDLATHFLKAQNKSLMKDF- 283

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
                    + F+K R    P    V   D  + V F++   GVA GQA V Y  D    
Sbjct: 284 ------KSGEYFIKARYRSMPTKALVSLKDGMIEVGFKEPFYGVAKGQALVVYEDDI--- 334

Query: 376 RVLGGGII 383
            VLGGG+I
Sbjct: 335 -VLGGGVI 341


>gi|326381518|ref|ZP_08203212.1| tRNA-specific 2-thiouridylase MnmA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199765|gb|EGD56945.1| tRNA-specific 2-thiouridylase MnmA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 362

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 142/377 (37%), Positives = 194/377 (51%), Gaps = 25/377 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G++V+GV L L  +  A +     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLALSTAPGALRTGSRGCCSREDADDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF+  VI  F ++YAAGETP PC+ CN  +KFS L      LG D
Sbjct: 61  ADLLGIPFYVWDFADRFKEDVIDEFVAAYAAGETPNPCLSCNEKIKFSALAERAVALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L TGHY R       DG+    + R +D ++DQSY L     QQL    FP+GD  K  
Sbjct: 121 ALVTGHYARLA-----DGE----LRRAVDADKDQSYVLAVLDHQQLSRAMFPVGDTPKPR 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           +R+ A   GL +A+K DS DICF+  G     +          G +V    G  L  H+G
Sbjct: 172 IREEAERRGLAVANKPDSHDICFIPTGDTRAFLGARIG--VRPGAVVDGATGDTLAEHDG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +TIGQR+GLG+    A G P +V  +D +S  V VG    LEV  I      W    
Sbjct: 230 VHGFTIGQRKGLGIEAPAADGHPRYVTGIDPDSGTVTVGTAADLEVTSISANRAVWTSGR 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFYTS 370
             E  V    +C V++R+            D     G+ +D  +   GVA GQA V Y  
Sbjct: 290 TPEGPV----ECIVQVRAHGGLAQAVATPVDTPDGPGIQIDLREPLRGVARGQAAVLYVP 345

Query: 371 DSNEARVLGGGIISGSK 387
           D+   +V+G G I+GS+
Sbjct: 346 DAAGDQVIGCGRITGSE 362


>gi|270011194|gb|EFA07642.1| hypothetical protein TcasGA2_TC030543 [Tribolium castaneum]
          Length = 365

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 172/374 (45%), Gaps = 36/374 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGGVDS+              GV +Q ++       KG C A  D  DA  VCD
Sbjct: 6   KVVVGISGGVDSA--------------GVFMQNWDIAD---EKGYCSADADYKDAALVCD 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
            +++     ++ + + N V       Y  G TP P V CNR +KF+      R +LGAD 
Sbjct: 49  KLDIKLTHVNFVKHYWNEV--NLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 106

Query: 141 LATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGHY R+         + ++   +   +D  +DQ++FL    Q+ L    FPLGD+ K
Sbjct: 107 IATGHYARTSFGSYLEHYNPEKGVRLLNAVDWFKDQTFFLCQVNQEALQRTMFPLGDLMK 166

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255
             V+ +ARE GL+ IA K +S  ICF+   K+ D ++         GD V ++  +++G+
Sbjct: 167 PEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDD--KPGDFVDVDTAKVVGQ 224

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           HNG+  +T+GQR  L      P FV   D + + + V        L  + I   E +W+ 
Sbjct: 225 HNGVHQWTLGQRARLHSYES-PYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPHWIH 283

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
                D      +C  K + ++  V   V +   G+ +   + +  +  GQ  V     S
Sbjct: 284 SQPP-DLQNGVLECDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPGQFAVL----S 338

Query: 373 NEARVLGGGIISGS 386
            +   LGG  I  +
Sbjct: 339 KDGECLGGARIINT 352


>gi|327313269|ref|YP_004328706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola F0289]
 gi|326945092|gb|AEA20977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella denticola F0289]
          Length = 360

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 163/371 (43%), Gaps = 23/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ R+ V +SGGVDSSVV     R         +++       K +  C + +D+  A  
Sbjct: 7   KNRRIAVLLSGGVDSSVVVYEFARLDLHPDCFYIRI---GPEEKEEWDCNSEEDMEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + N V         AG TP P V CNR +KF            
Sbjct: 64  VARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHNY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K+
Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQLYDWQLKKALFPIGHYEKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+    Y + V R        GDI+ L  G+ +G H 
Sbjct: 178 EVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVHRYLGE--QTGDIIELETGKKIGEHR 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FVV  D + + + V               L + ++L +G
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHFLTEG 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
           + E       K   KIR + +  P   ++  DG   +       GVA GQ CV Y  D +
Sbjct: 295 ITELPE----KITFKIRHTPEYHPARAEQLPDGKCIIHSAGRIHGVAPGQFCVVY--DEH 348

Query: 374 EARVLGGGIIS 384
             R  G G I+
Sbjct: 349 HHRCYGSGEIT 359


>gi|29345565|ref|NP_809068.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81587200|sp|Q8ABF5|MNMA1_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|29337457|gb|AAO75262.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 355

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +  + 
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIEMSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF            D 
Sbjct: 58  RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCF-EQQVGKNFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ +G H G 
Sbjct: 172 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--REGAIIELETGKKVGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FV+  D   + + V     +E        + + +++ +  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +DA  +      KIR + +     + + + G   +   +   G+A GQ  V Y  D    
Sbjct: 289 KDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIY--DEEAG 345

Query: 376 RVLGGGIISG 385
             +G G I+ 
Sbjct: 346 ICVGSGEITR 355


>gi|291279546|ref|YP_003496381.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Deferribacter desulfuricans SSM1]
 gi|290754248|dbj|BAI80625.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Deferribacter desulfuricans SSM1]
          Length = 346

 Score =  347 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 197/367 (53%), Gaps = 29/367 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +++VAMSGGVDSSV A  + ++G+DV+GVTL+L++S             + + DA  V
Sbjct: 2   KDKIIVAMSGGVDSSVAAYKMLKEGFDVVGVTLKLFDSEN---------TEKMIADAESV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +   V DY   F++ VI  F +SY  GETP PC  CN+T KF  L +  ++  A 
Sbjct: 53  AKLLGIKWCVADYSSYFKD-VISYFINSYRKGETPNPCAYCNKTAKFVYLFNEMQKNNAK 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198
            +ATGHY +       +   ++ + +  +L++DQSY+L      Q+  L+FPL ++  K+
Sbjct: 112 YIATGHYAKII-----EKNGKKYIGKATNLQKDQSYYLALLDSFQISLLKFPLSEIDSKD 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257
             R +A+E+GL +++K DSQ++CF+    Y + + +++++    +G +++ NG+ L  H 
Sbjct: 167 ETRQIAKEIGLPVSEKKDSQEVCFLCGRNYREFLSEKVDSKRFKKGYMIY-NGKKLREHE 225

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YT+GQRRGLG+   EPL+V  +D     + +  +E +    + LR++N + D L  
Sbjct: 226 GVEFYTVGQRRGLGLNYHEPLYVKEIDAKKGNIYLAKKEEVVKRGVKLRDVNMVDDRLRV 285

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 FK   KIR   +     V+   +    + FEK +     GQ    Y  D     
Sbjct: 286 ------FKAKAKIRYRMNEEDCLVEILPESKALILFEKPQFAPTKGQLAAIYLDDI---- 335

Query: 377 VLGGGII 383
           V+GGG I
Sbjct: 336 VVGGGFI 342


>gi|253571710|ref|ZP_04849116.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
 gi|251838918|gb|EES67003.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
          Length = 355

 Score =  347 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 162/370 (43%), Gaps = 20/370 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +  + 
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIEMSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF            D 
Sbjct: 58  RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCF-EQQVGKNFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ +G H G 
Sbjct: 172 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--REGAIIELETGKKVGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FV+  D   + + V     +E        + + +++ +  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVIKKDIEENIIYVSHGYGVETQFGSEFRINDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +DA  +      KIR + +     + + + G   +   +   G+A GQ  V Y  D    
Sbjct: 289 KDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIY--DEEAG 345

Query: 376 RVLGGGIISG 385
             +G G I+ 
Sbjct: 346 ICVGSGEITR 355


>gi|298384487|ref|ZP_06994047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298262766|gb|EFI05630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 355

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 163/370 (44%), Gaps = 20/370 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +  + 
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIEMSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF            D 
Sbjct: 58  RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCF-EQQVGKNFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ +G H G 
Sbjct: 172 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--REGAIIELETGKKVGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FV+  D   + + V     +E        + + +++ + L+
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENLW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +DA  +      KIR + +     + + + G   +   +   G+A GQ  V Y  D    
Sbjct: 289 KDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIY--DEEAG 345

Query: 376 RVLGGGIISG 385
             +G G I+ 
Sbjct: 346 ICVGSGEITR 355


>gi|149194412|ref|ZP_01871509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caminibacter mediatlanticus TB-2]
 gi|149135587|gb|EDM24066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caminibacter mediatlanticus TB-2]
          Length = 339

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 36/371 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV+V +SGGVDS+V   LLK+ GY+VIG+ L++++              +++    ++ 
Sbjct: 1   MRVLVGVSGGVDSAVTTYLLKKAGYEVIGIYLKMHS---------GVNHSENLKKIEKLS 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I  S+ V D EE FR  V   F  SY  G TP PC  CN+ +KF   ++   +   + 
Sbjct: 52  KKIGFSYVVEDVEEEFRKEVYEYFIKSYEEGSTPNPCAMCNKQIKFGIFMNFLEKYNCEK 111

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY+R+      DGK    +    D  +DQSYFLF   ++ L  L FPLG+  K  +
Sbjct: 112 AATGHYVRN------DGK---FLYEAKDKNKDQSYFLFGIKKEVLPKLIFPLGEYTKNEI 162

Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           + +A+E+GL + A + +SQDICF++   Y DV+K  +     +G +V+  GQ +G H G 
Sbjct: 163 KLIAKEIGLEEFATQKESQDICFIENS-YIDVLK-FHFNPEKKGKVVNKKGQKIGIHKGY 220

Query: 260 INYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDGLFE 317
             YTIGQR+G  +    +P +V+ +D  ++ +IVG ++ LE   ++L+ +N ++ D +  
Sbjct: 221 AFYTIGQRKGFSLFKSSKPHYVIGIDAKTNTIIVGDKKDLEKKLVFLKGVNLFIDDKI-- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                 F+C  K+R     +   V+  +     V F+++  GVA GQACVFY  +    +
Sbjct: 279 ------FECEAKVRYRAPKLKAVVKMESKTKAVVKFKEAATGVAKGQACVFYEGE----K 328

Query: 377 VLGGGIISGSK 387
           +LGGG I G+K
Sbjct: 329 LLGGGWIRGAK 339


>gi|218249186|ref|YP_002375182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi ZS7]
 gi|226704767|sp|B7J2N7|MNMA_BORBZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218164374|gb|ACK74435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi ZS7]
          Length = 355

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQIK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|15595027|ref|NP_212816.1| tRNA-specific 2-thiouridylase MnmA [Borrelia burgdorferi B31]
 gi|223889488|ref|ZP_03624074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 64b]
 gi|226321380|ref|ZP_03796907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi Bol26]
 gi|8134738|sp|O51625|MNMA_BORBU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2688619|gb|AAC67035.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|223885174|gb|EEF56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 64b]
 gi|226233176|gb|EEH31928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi Bol26]
          Length = 355

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQIK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|34557952|ref|NP_907767.1| tRNA-specific 2-thiouridylase MnmA [Wolinella succinogenes DSM
           1740]
 gi|81653445|sp|Q7M8I9|MNMA_WOLSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|34483670|emb|CAE10667.1| TRNA METHYLTRANSFERASE [Wolinella succinogenes]
          Length = 345

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 187/369 (50%), Gaps = 37/369 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V + MSGG+DSS  A LL+  G++V+G+ L+L+++             Q++ +  +V 
Sbjct: 1   MKVALLMSGGIDSSYSAYLLQEAGHEVVGIYLKLHDNDL--------KHAQNIQNIEKVS 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  ++FD +E F+  V   F  SY  G TP PC  CN  +KF   L    +LG + 
Sbjct: 53  QKLGIETHIFDAKELFKKHVYDYFVDSYQKGLTPNPCAFCNPFMKFGFALERALELGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +            +    D  +DQSYFLF   +  +  L FPLGD  K  +
Sbjct: 113 IATGHYARVKEG---------RIQEAKDQSKDQSYFLFGLKESVISRLIFPLGDRLKSEI 163

Query: 201 RDLAREMGLD----IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           +  A E+ L     +    +SQ+ICFV+   Y D+++R    +  +G +   +G+++G H
Sbjct: 164 KPEALEI-LPWLGTLESYKESQEICFVES-DYIDILRRHFP-VEQKGIVQDSSGRVVGEH 220

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  V    +P +V+ +D   +R+IVG +E L  + +Y        D  
Sbjct: 221 KGYMQYTIGKRKGFTVKGAHDPHYVLSIDPKENRLIVGSKEELAKNVVYA-------DPF 273

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSDSNE 374
                 + F+  VKIR     V   V+ ++ G  V   ++   GVA+GQA V Y  D   
Sbjct: 274 ALPEGFEHFEGEVKIRYRSLKVKAEVRLDESGRLVAHLKEKVYGVANGQALVLYAED--- 330

Query: 375 ARVLGGGII 383
             V+GGG I
Sbjct: 331 -LVIGGGWI 338


>gi|206896038|ref|YP_002247576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738655|gb|ACI17733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 347

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 176/370 (47%), Gaps = 26/370 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGG+DS+V    LK +G+ V  V L +    +  ++  +CC+      A+RV 
Sbjct: 1   MKIAVGLSGGIDSTVSLLRLKEEGHHVTAVFLNMLPEGEYQEK--TCCSVDSQLLAKRVA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               V   V+D  E F+  VI  F +    G TP PCV CNR VK    + +  Q G D 
Sbjct: 59  MNQGVPFEVWDLTETFQKHVINIFKAMVKKGLTPNPCVFCNRCVKIGAFVELAMQKGFDA 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R R            + + +D  +DQSY L    +Q L  + FPLG++ +E V
Sbjct: 119 VATGHYARQREGN---------LYKAIDSWKDQSYMLALVEKQVLAKVLFPLGELTREEV 169

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
              A   G+       SQDICF+  G     + +  + +   G I+   G I+G H G  
Sbjct: 170 ISYAHSHGIK-HVPRSSQDICFMPHGGMEQFITQNISEVTKPGPII-FRGHIIGEHRGYP 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLGVA  EPL+V  +D  S+ V VG  E L    + +  +N           
Sbjct: 228 YYTVGQRRGLGVAHREPLYVKKIDPISNTVHVGTSEELFSEHMTVVMMN--------QFS 279

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379
               +  +KIR     VP FV+++++ +  V F +    +  GQ  V Y  D  +     
Sbjct: 280 ALTRQVEIKIRYRAHSVPAFVEQSNEPILSVRFSQPVRAITPGQIAVAYEGDKVQWA--- 336

Query: 380 GGIISGSKRS 389
            GII  ++ +
Sbjct: 337 -GIILNARTT 345


>gi|150010344|ref|YP_001305087.1| tRNA-specific 2-thiouridylase MnmA [Parabacteroides distasonis ATCC
           8503]
 gi|205816895|sp|A6LIF1|MNMA_PARD8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149938768|gb|ABR45465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parabacteroides distasonis ATCC 8503]
          Length = 358

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 169/369 (45%), Gaps = 22/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDK--DGYIDCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEE---KWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KTWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGK--RPGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V      E      I ++  +++ + 
Sbjct: 229 GYWFHTIGQRKGLGLSGG-PWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITED 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            + +   +  +   KIR + +    +++R  D   V+ ++   G+A GQ  V Y  D   
Sbjct: 288 PWGEFEGEK-EITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIYDKD--H 344

Query: 375 ARVLGGGII 383
              LG G+I
Sbjct: 345 HLCLGSGMI 353


>gi|298480486|ref|ZP_06998683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|298273307|gb|EFI14871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 379

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 166/380 (43%), Gaps = 49/380 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 115 FYIATGHYAQNIQL-----NETFYITYAADSDKDQTFFLWGLKQDILNRMLLPMGDITKA 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---------------- 241
             R  A E G   +A K DS  +CF     Y   +K                        
Sbjct: 170 EARAWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLKDWLVRNGQMSVSNSEASINNSQTS 228

Query: 242 ------------EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSR 289
                        G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +D   + 
Sbjct: 229 GSDKQTWSDRIRRGRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEIDPEKNE 288

Query: 290 VIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           V++    SLE   ++L++ N +     ++  +D     VKIR  +      +    D  +
Sbjct: 289 VMLASLSSLEKTEMWLKDWNLVN----QERTLDRSDIIVKIRYRKQENHGTITVTSDHLL 344

Query: 349 YVDFEKSEVGVASGQACVFY 368
           +V   +    +A GQA  FY
Sbjct: 345 HVQLHEPLTAIAPGQAAAFY 364


>gi|224532386|ref|ZP_03673016.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
 gi|225548926|ref|ZP_03769903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 94a]
 gi|225550036|ref|ZP_03770997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 118a]
 gi|224512693|gb|EEF83064.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
 gi|225369495|gb|EEG98947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 118a]
 gi|225370529|gb|EEG99965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 94a]
          Length = 355

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|223041130|ref|ZP_03611385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter rectus RM3267]
 gi|222877624|gb|EEF12750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter rectus RM3267]
          Length = 338

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 205/371 (55%), Gaps = 42/371 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++++AMSGGVDS++ A +L   GY+V+G  ++L+               Q++    R C
Sbjct: 1   MKILMAMSGGVDSTMGAKMLLEAGYEVVGCYMKLHKKP--------GYHEQNIGKVARAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + ++++V D ++ F   V  PF  +Y  G TP PC  CNR +KF +LL   + +G + 
Sbjct: 53  EYLGINYHVIDLQDEFDRYVYTPFVGAYKEGRTPNPCALCNRFIKFGELLKFAKSIGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHYIR +     DG  R       D  +DQSYF+    ++ + D+ FPLGD  K+ +
Sbjct: 113 LATGHYIRVQ-----DGLIRV----AADPSKDQSYFVAQVPKEIIADMIFPLGDKFKKDI 163

Query: 201 RDLA------REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++LA      RE G    ++++S +ICFV+   Y +V+ + +    L GD+V   G+++G
Sbjct: 164 KELAKSLPSFREYG----EQAESSEICFVEDT-YIEVLNK-HYETDLPGDVVDSAGRVIG 217

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           RHNG ++YTIG+RRG  V    EP FV+ +D  ++R++VGP+E LE  +I +  +N   D
Sbjct: 218 RHNGYMHYTIGKRRGFEVFGAHEPHFVLAIDAANNRIVVGPKEELERGKIAVNSLNLFID 277

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372
                     F C VK+R     +   V+  + G   V+ ++S  GVASGQ  VFY  + 
Sbjct: 278 E-------SEFDCDVKVRYRSIGLNAHVKVLEGGTAEVELKQSAFGVASGQLAVFYRGE- 329

Query: 373 NEARVLGGGII 383
               V+G G I
Sbjct: 330 ---LVIGSGFI 337


>gi|320355316|ref|YP_004196655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123818|gb|ADW19364.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 173/362 (47%), Gaps = 28/362 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VAMSGGVDS++ A+LL+  G+DV G  + L  +    +R+            R V D 
Sbjct: 6   VGVAMSGGVDSTMAASLLQEQGHDVHGFFMLLPLANLEVQRQR----------VREVADR 55

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +++     D  + F   VI  F  SY AG TP PC+ CNR+VKF  L    R    + +A
Sbjct: 56  LSIPLTEVDLRQSFAEQVIGYFNRSYRAGLTPNPCIHCNRSVKFGLLADTMRHQDLERIA 115

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R +         R  + R  D  +DQSYFL      Q+  L FPLGD  K+ V  
Sbjct: 116 TGHYARVQSVGD-----RCFVARGSDRTKDQSYFLARLAADQVNTLLFPLGDWTKQQVYA 170

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
            A  +G       +SQD+CF+ QG    + ++    +   G +V  +G+ +G H G+ +Y
Sbjct: 171 RAAALGFH-FSGEESQDVCFLSQGLAAFLSEQGIGDLC--GPVVTADGRQIGEHRGVWHY 227

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQRRGLG+    P +VV LD   +RVIVG ++ L   R  +  + W            
Sbjct: 228 TIGQRRGLGLPDVTPWYVVGLDGPGNRVIVGKQDDLFATRCTVHALRWTH-----QPPAL 282

Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
            ++  V++RS   P          +   + F+  +  +  GQ  V Y  D    RV+G  
Sbjct: 283 PWRGLVQLRSRHTPAMAALAPSGPEQWSLVFDTPQRAITPGQFAVCYEHD----RVVGSA 338

Query: 382 II 383
           +I
Sbjct: 339 VI 340


>gi|229495661|ref|ZP_04389390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317431|gb|EEN83335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 383

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 173/384 (45%), Gaps = 24/384 (6%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
              L + P+D  + V  SGGVDSSV   LL + G+      +++    +       C A 
Sbjct: 9   PETLQEVPRDASIAVLASGGVDSSVAVHLLLQAGFRPDLFYIRIGMEDEEGFI--DCPAE 66

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+     +     + + V D  + +   V+     S   G TP P + CN+ +KF    
Sbjct: 67  EDMEMVTLLARKYQLHYEVIDLHKEYWERVVKYTIESVRQGLTPNPDMMCNKLIKFGVFE 126

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                   D +ATGHY  +    G     +  +    D  +DQ+ FL     +Q+  L F
Sbjct: 127 ERV-GHRYDYIATGHYASTARVDG-----KTFLATAPDPVKDQTDFLAQINFKQISKLLF 180

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLN 249
           PLG + K+ VR +A E GL  A + DSQ ICF+ +  Y D ++R        G I+ +  
Sbjct: 181 PLGCLTKQQVRMVAEEAGLANAHRKDSQGICFLGKINYNDFIERYLGK--RPGRIIEYET 238

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLR 306
           G+ LG H G   +TIGQR+GLG++ G P FVV  D   + ++V             I++ 
Sbjct: 239 GKTLGTHQGFWFHTIGQRKGLGLSGG-PWFVVKKDCKRNIILVSRGYDPLTQYGTEIFVD 297

Query: 307 EINWLGDGLFEDAVVDGFK-------CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
           + +++ + LF      G K         +KIR + + V   ++R + G ++  E    G+
Sbjct: 298 KFDFITEDLFAPEGAVGNKEGAQVVPITLKIRHTPEFVRATIRRLERGYHIVSETPIQGI 357

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A GQ  V Y  +S      G G+I
Sbjct: 358 APGQYAVIYDPESR--LCFGSGMI 379


>gi|172040408|ref|YP_001800122.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium urealyticum DSM
           7109]
 gi|229486339|sp|B1VFZ9|MNMA_CORU7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|171851712|emb|CAQ04688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium urealyticum DSM 7109]
          Length = 406

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 137/389 (35%), Positives = 193/389 (49%), Gaps = 38/389 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRVV AMSGGVDS+V AA     G++VIGV L L  S +A       CC+ +D  DARRV
Sbjct: 1   MRVVAAMSGGVDSAVAAARALEAGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL  +  LG D
Sbjct: 61  ADKLGIPFYVWDFSDRFKADVIDNFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY +    V         + R +D ++DQSY L   T +QL    FP+GD  K  
Sbjct: 121 AVVTGHYAQLHDGV---------LRRGVDADKDQSYVLGVLTDEQLAHCMFPVGDTVKPE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R+ A + G  +A+K DS DICF+  G+    +          G +    G+ +  H+G+
Sbjct: 172 IREEAADAGFGVANKPDSHDICFIPDGRTQAFLGSKIGL--RPGLVRDTGGETVAEHDGV 229

Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
             +T+GQR+GLG+      G P +V  +D ++  V VG RE L V  I    +      L
Sbjct: 230 YGFTVGQRKGLGLPRETLDGRPRYVTDIDAHTGTVTVGTREDLRVGGIIADRL----KRL 285

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-------DFEKSEV----------- 357
             +     F C V++R+    VP   +  DD   V       + ++              
Sbjct: 286 DPEVHGREFDCEVQVRAHGGVVPARARLVDDPTPVTPAGRVKEADELPWRLELELLQPLE 345

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386
           GVA GQA V Y  D +   +LG G I  +
Sbjct: 346 GVARGQAAVVYRPDEDGDILLGSGTIRAT 374


>gi|312148210|gb|ADQ30869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi JD1]
          Length = 355

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + ++      + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQIK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|195941501|ref|ZP_03086883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 80a]
          Length = 355

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRRDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|255327012|ref|ZP_05368088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia mucilaginosa ATCC 25296]
 gi|255296229|gb|EET75570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rothia mucilaginosa ATCC 25296]
          Length = 407

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 142/402 (35%), Positives = 192/402 (47%), Gaps = 42/402 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + +  +V+D+ ERF+  V+  F S Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCSQLGIPFFVWDFSERFKEDVVDDFISEYEAGRTPNPCMRCNEKIKFAALLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY R      +DG   R + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVVTGHYARV--ITTEDGN--RELHRAADWAKDQSYVLGVLTHEQLKHAWFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A E G  +A K DS DICF+ +G     +          G I   +G++LG H 
Sbjct: 176 AQVRAEAAERGFSVAKKPDSYDICFIPEGDTRAWLGDHI--TMRPGLIKDTHGEVLGEHP 233

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW--- 310
           G   YT+GQR+GL +      G+P FV+ +    + VIVG RE L VH I      W   
Sbjct: 234 GAQAYTVGQRKGLALGRPAADGKPRFVLEVRPKENEVIVGSRELLAVHEIRGIRATWAGI 293

Query: 311 --------LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--------QRNDDGV-----Y 349
                   L +     A  + F+   ++R+  DPV            +  ++G       
Sbjct: 294 PVEQAARFLEEPAQLGARSEEFEVTAQVRAHADPVRAKAYMTWAPDPEAEEEGALRLETV 353

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           V       GVA GQ  V Y       RVLG   I+ +   D 
Sbjct: 354 VRLLDPLSGVAPGQTMVLYQG----TRVLGQSTIARAYSLDR 391


>gi|282859182|ref|ZP_06268304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bivia JCVIHMP010]
 gi|282588001|gb|EFB93184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bivia JCVIHMP010]
          Length = 386

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 109/393 (27%), Positives = 165/393 (41%), Gaps = 41/393 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD ++ V +SGGVDSSVV     R G       +++            C + +D+  A  
Sbjct: 7   KDKKIAVLLSGGVDSSVVVWEFARLGLHPDCYYIKI---GPEEAEAWDCSSEEDLEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC        V D  + +   V         AG TP P V CNR +KF       +    
Sbjct: 64  VCRRFECKLEVIDCHKEYWGQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFYEK-KGYEY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY +++   G     ++ +C   D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 123 DLIATGHYAQTKWIDG-----KKWLCTSPDPVKDQTDFLAQIYDWQLQKAIFPIGHYEKN 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+    Y + V+R     A  G+I+ L  G+ +G H 
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGENA--GEIIELETGKKIGEHK 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FV+  D   + + V            +  + +++WL   
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVIKKDVEKNILYVSHGYDPETAYKRKFKVCDLHWLTVS 294

Query: 315 LFEDAVVDG---------------FKCFVKIRSSQDPVPVFVQ--------RNDDGVYVD 351
             E    +G                    KIR + +    +++               + 
Sbjct: 295 PSELEDSNGIILQNGCCSSFKHTLIPITFKIRHTPEYHQGYLEVLSEEGHLVEGSEALIH 354

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +K   GVA GQ CV Y  D    R  G G I+
Sbjct: 355 AQKKIHGVAPGQFCVIY--DEEHERCFGSGEIT 385


>gi|319790619|ref|YP_004152252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermovibrio ammonificans HB-1]
 gi|317115121|gb|ADU97611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermovibrio ammonificans HB-1]
          Length = 357

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 184/367 (50%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++  SGGVDS   A LL   G++V  V  +L      +K              RR  
Sbjct: 15  KRVLLGFSGGVDSFYAAHLLLEQGFNVYPVYFKLLPDADTTKP-------------RRSA 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N+   V D  E F+ AVI  F + Y  G TP PC  CNR +K  +L  + R+L    
Sbjct: 62  ELLNLKLTVVDLTEEFKKAVIDYFIAYYRKGLTPNPCAVCNREIKLKELYKLARKLKIPY 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R       +   R+++ R ++  ++QSYFL    Q+   +L  PLG++ K  V
Sbjct: 122 IATGHYARVEKV---ESFGRKLIKRGVEPGKEQSYFLALVEQRVFENLILPLGNLTKREV 178

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            + A+++G       +SQD+CF+++  Y D +++        G      G++LG+H G+I
Sbjct: 179 IEKAKKLGFPFE--GESQDVCFIKEKSYADFLRKFIK--PRPGPFKLTTGEVLGKHKGLI 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLG++   PL VV L    + VIVGP+E++E   I + ++NW          
Sbjct: 235 YYTVGQRRGLGISYKHPLHVVELRPEENAVIVGPKEAVEKDEITVWKVNWH----VPQER 290

Query: 321 VDGFKCFVKIRSSQDPVPV-FVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378
           +       ++R   +PVPV  +    +G+  V         A GQ C FY++D     +L
Sbjct: 291 LTDLPLLAQVRYRSEPVPVESLHYFKNGIYRVKLAAKVSAPAPGQVCAFYSND----LLL 346

Query: 379 GGGIISG 385
           GGG I+ 
Sbjct: 347 GGGEITR 353


>gi|225551719|ref|ZP_03772662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia sp. SV1]
 gi|225371514|gb|EEH00941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia sp. SV1]
          Length = 355

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINNQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+QL  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQLSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTAGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      +Q   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGKKKYSCKLQLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|256839194|ref|ZP_05544704.1| tRNA methyl transferase [Parabacteroides sp. D13]
 gi|256740113|gb|EEU53437.1| tRNA methyl transferase [Parabacteroides sp. D13]
          Length = 358

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 169/369 (45%), Gaps = 22/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDK--DGYIDCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEE---KWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KIWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGK--RPGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V      E      I ++  +++ + 
Sbjct: 229 GYWFHTIGQRKGLGLSGG-PWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITED 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            + +   +  +   KIR + +    +V+R  D   V+ ++   G+A GQ  V Y  D   
Sbjct: 288 PWGEFEGEK-EITFKIRHTPEFTHGYVRRIGDLYRVESDEKIQGIAPGQYSVIYDKD--H 344

Query: 375 ARVLGGGII 383
              LG G+I
Sbjct: 345 HLCLGSGMI 353


>gi|255012392|ref|ZP_05284518.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. 2_1_7]
 gi|262382361|ref|ZP_06075498.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
 gi|298374740|ref|ZP_06984698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_19]
 gi|301308423|ref|ZP_07214377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 20_3]
 gi|262295239|gb|EEY83170.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
 gi|298269108|gb|EFI10763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_19]
 gi|300833893|gb|EFK64509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 20_3]
          Length = 358

 Score =  345 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 169/369 (45%), Gaps = 22/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDK--DGYIDCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEE---KWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KIWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGK--RPGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V      E      I ++  +++ + 
Sbjct: 229 GYWFHTIGQRKGLGLSGG-PWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITED 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            + +   +  +   KIR + +    +++R  D   V+ ++   G+A GQ  V Y  D   
Sbjct: 288 PWGEFEGEK-EITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIYDKD--H 344

Query: 375 ARVLGGGII 383
              LG G+I
Sbjct: 345 HLCLGSGMI 353


>gi|224540371|ref|ZP_03680910.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518022|gb|EEF87127.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 353

 Score =  345 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 163/367 (44%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + V +SGGVDSSVV  LL   GY      +++            C A +D   A  + 
Sbjct: 1   MNISVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GMDGTDYMDCSAEEDWEMATAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   + D ++ +   V          G TP P V CNR +KF        +   D 
Sbjct: 58  HRYGLPLEMVDLQKEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGK-EFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +    G     +  +   +D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 117 IATGHYATTVHKDG-----KVWLGIAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+AR  GL  A + DSQ ICF+ +  Y D V+R       +GDI+ L  G+ +G H G 
Sbjct: 172 RDIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLGE--RQGDIIELETGKKIGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FV+  D  ++ + V      +        + + +++ +  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVIRKDVEANVLYVSRGYDTQWQYGREFKIHDFHFITENPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                       KIR + + +   + R  +   +   ++  G+A GQ  V Y  D     
Sbjct: 289 LHN--QEVDVTFKIRHTPEFMKGKLIREGEIYRIVSSENLQGIAPGQFGVVY--DEASRI 344

Query: 377 VLGGGII 383
            +G G I
Sbjct: 345 CIGSGEI 351


>gi|294656411|ref|XP_458677.2| DEHA2D04818p [Debaryomyces hansenii CBS767]
 gi|199431453|emb|CAG86816.2| DEHA2D04818p [Debaryomyces hansenii]
          Length = 415

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 106/402 (26%), Positives = 190/402 (47%), Gaps = 33/402 (8%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +++     N +  + N  D  ++VAMS GVDSSV AAL      +V G+ +  ++     
Sbjct: 30  LMTNEVSTNYMQPEPNANDE-IIVAMSSGVDSSVCAALYAEKYKNVRGIYMANWS----- 83

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             + + C   D  D +++C+ +N+     ++E+ + N V  P    Y  G TP P V CN
Sbjct: 84  --QTAKCTESDWNDVKKICNDLNIPCERVNFEKEYWNEVFQPMVQMYEKGLTPNPDVGCN 141

Query: 122 RTVKFSDLLSVTRQLGAD----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           + VKF  ++    +  ++     L TGHY R       +      + R     +DQSY+L
Sbjct: 142 KYVKFGKMIEHLTKKFSNNQKWWLVTGHYARIMKCQTSNE---YNLLRGYYKSKDQSYYL 198

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRI 235
               ++ L  +  P+G + K +VR+LA+   L  A K DSQ +CFV   +  + + +   
Sbjct: 199 ANIPKRVLSQVLMPIGHLTKPNVRELAKGYNLHTAKKPDSQGLCFVSQDENNFRNFLNEY 258

Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV 290
            A     G+I+  +G+I G+H G+ + TIGQ+ G+ +  G+P      F+     +++ +
Sbjct: 259 IA--PNPGNIITEDGKIWGQHQGLWHATIGQKSGISMPQGDPRYKGIWFISEKRYDTNEL 316

Query: 291 IVG---PRESLEVHRIYLREINWLGDGLFE-DAVVDGFKCFVKIRSSQDPVPV-FVQRND 345
           ++      + L    + ++E +WL D +       +     V+ RS Q+P  +  ++ + 
Sbjct: 317 VIVKGNNNDRLFKKGLKVKEWSWLMDDISAISEKCEEGNLSVQYRSLQEPEIINSIKISQ 376

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             V ++  K    +A GQ  V Y  +    RVLG GI+  + 
Sbjct: 377 SDVDIELVKKARAMAPGQNIVLYEGN----RVLGSGILEETY 414


>gi|283457726|ref|YP_003362313.1| putative tRNA methyltransferase [Rothia mucilaginosa DY-18]
 gi|283133728|dbj|BAI64493.1| predicted tRNA methyltransferase [Rothia mucilaginosa DY-18]
          Length = 407

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 141/402 (35%), Positives = 190/402 (47%), Gaps = 42/402 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G++V+GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC  + +  +V+D+ ERF+  V+  F S Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  VCSQLGIPFFVWDFSERFKEDVVDDFISEYEAGRTPNPCMRCNEKIKFAALLERALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY R      +DG   R + R  D  +DQSY L   T +QL    FPL D   K
Sbjct: 120 DAVVTGHYARV--ITTEDGN--RELHRAADWAKDQSYVLGVLTHEQLKHAWFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A E G  +A K DS DICF+ +G     +          G I   +G++LG H 
Sbjct: 176 AQVRAEAAERGFSVAKKPDSYDICFIPEGDTRAWLGDHI--TMRPGLIKDTHGEVLGEHP 233

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW--- 310
           G   YT+GQR+GL +      G+P FV+ +    + VIVG RE L VH I      W   
Sbjct: 234 GAQAYTVGQRKGLALGRPAADGKPRFVLEVRPKENEVIVGSRELLAVHEIRGIRATWAGV 293

Query: 311 --------LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---------DDGVY---- 349
                   L +     A  + F+   ++R+  DPV                +  +     
Sbjct: 294 PVEQAARFLEEPAQLGARSEEFEVTAQVRAHADPVRAKAYMTWAPDPEAEEEGTLRLETV 353

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391
           V       GVA GQ  V Y       RVLG   I+ +   D 
Sbjct: 354 VRLLDPLSGVAPGQTMVLYQG----TRVLGQSTIARAYSLDR 391


>gi|158312934|ref|YP_001505442.1| tRNA-specific 2-thiouridylase MnmA [Frankia sp. EAN1pec]
 gi|205816861|sp|A8L536|MNMA_FRASN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158108339|gb|ABW10536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EAN1pec]
          Length = 355

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 192/372 (51%), Gaps = 30/372 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S  AS R G   CC  +D  DARR
Sbjct: 4   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSP-ASDRVGARGCCTLEDARDARR 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D  ERF   VI  F + Y+AG TP PCV CN  +KF+ +L     LG 
Sbjct: 63  AADVLGIPFYVWDLAERFETEVIDEFVADYSAGRTPNPCVRCNERIKFAAVLEKALALGF 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R    + +DG     + R +D  +DQSY L     +QL   RFPLGD  K 
Sbjct: 123 DAVVTGHHAR----LDEDGT----LRRSVDPAKDQSYVLGTLRPEQLAAARFPLGDSTKA 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR+ A   GL +ADK DS DICFV  G     ++         G +V    G+ LG H+
Sbjct: 175 QVREEAARRGLAVADKPDSHDICFVASGDTGAWLRERLG--PRPGPVVDAETGETLGEHD 232

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQRRGLG+      G P +V+ +   +S V VGP  +L++  +    I W  D
Sbjct: 233 GAYAFTVGQRRGLGLGRPAPDGRPRYVLEISPATSTVTVGPSSALDMRSLVAERIVWPHD 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           G           C  ++R+    VP  V    D + V   +   G A+GQA VFY  D  
Sbjct: 293 GPVS--------CTAQVRAHGGVVPAVVTARGDELDVRLAEPVRGTAAGQAVVFYDGD-- 342

Query: 374 EARVLGGGIISG 385
             RVLGGG I  
Sbjct: 343 --RVLGGGRIRS 352


>gi|224532293|ref|ZP_03672925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia valaisiana VS116]
 gi|224511758|gb|EEF82164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia valaisiana VS116]
          Length = 355

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 184/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYKIINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYIEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTLEELKNGNTPSPDIFCNQRIKFGAFFEKINEQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       ++  ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQAK-----EKIFLLKQAKDKIKDQSYFLSHLSQKQMSKLCFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEE--KGNIIEKETGKIMGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + V   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYVSHNENYLKQAKRKFLVHEIHWIN--- 287

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             D   D     +KIR  +      ++  +++ + +   K + G++ GQ  +FY +    
Sbjct: 288 --DIPQDFKNFKIKIRHGEKKYSCKLKLISNNLIEISLNKEDHGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
            + LGG  I
Sbjct: 342 TKCLGGAKI 350


>gi|262405518|ref|ZP_06082068.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294646343|ref|ZP_06723990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294806678|ref|ZP_06765509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262356393|gb|EEZ05483.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|292638298|gb|EFF56669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294446098|gb|EFG14734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295086173|emb|CBK67696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 379

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 165/380 (43%), Gaps = 49/380 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR 
Sbjct: 4   ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G 
Sbjct: 55  LAERLGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY ++             +    D ++DQ++FL+   Q  L  +  P+GD+ K 
Sbjct: 115 FYIATGHYAQNIQL-----NETFYITYAADSDKDQTFFLWGLKQDILNRMLLPMGDITKA 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---------------- 241
             R  A E G   +A K DS  +CF     Y   +K                        
Sbjct: 170 EARAWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLKDWLVRNGQMSVSNSEASINNSQTS 228

Query: 242 ------------EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSR 289
                        G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +D   + 
Sbjct: 229 GSDKQTWSDRIRRGRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEIDPEKNE 288

Query: 290 VIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348
           V++    SLE   ++L++ N +     ++  +      VKIR  +      +    D  +
Sbjct: 289 VMLASLSSLEKTEMWLKDWNLVN----QERTLGRSDIIVKIRYRKQENYGTITVTSDHLL 344

Query: 349 YVDFEKSEVGVASGQACVFY 368
           +V   +    +A GQA  FY
Sbjct: 345 HVQLHEPLTAIAPGQAAAFY 364


>gi|239917970|ref|YP_002957528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus NCTC 2665]
 gi|259495832|sp|C5CB51|MNMA_MICLC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|239839177|gb|ACS30974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Micrococcus luteus NCTC 2665]
          Length = 378

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 141/381 (37%), Positives = 191/381 (50%), Gaps = 23/381 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ + +  Y +D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ LL    +LG 
Sbjct: 60  ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY   R   G DG     + R  D  +DQSY L   T  QL    FPL D   K
Sbjct: 120 DAVCTGHYAAVRP--GPDGS--LELHRAADDAKDQSYVLGVLTADQLAHCLFPLADTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           E VR  A E GL +A K DS DICF+  G     +          G IV   GQ LG H 
Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA--PGPIVDPEGQELGTHA 233

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G+P FV+ +    ++V+VG RE L+V RI     +W G 
Sbjct: 234 GAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENKVVVGGRELLDVDRITGIRPSWAGA 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFY 368
            + E      F C ++ R+  + V    ++  D     G  ++  +   GVA GQ  V Y
Sbjct: 294 PVPEARTGAWFDCALQFRAHGEIVEARARQRADAAGHPGWEIEPARPLRGVAPGQTAVLY 353

Query: 369 TSDSNEARVLGGGIISGSKRS 389
                  RVLG   I  ++ +
Sbjct: 354 RG----TRVLGQATIDTARNA 370


>gi|282880951|ref|ZP_06289642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305174|gb|EFA97243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 358

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 161/371 (43%), Gaps = 25/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ V +SGGVDSSVV   L R G       +++       + +  C + +D+  A  
Sbjct: 7   KDKRIAVLLSGGVDSSVVVYELVRMGVQPDCFYIKI---GPEEQEEWDCTSEEDLEMATH 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + + N V         AG TP P V CNR +KF            
Sbjct: 64  VAAKYGCKLQVVDCHKEYWNEVTRYTMEKVKAGYTPNPDVMCNRLIKFGAFHEK-MGYQY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++ +  G     R+ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 123 DLIATGHYAQTEIIEG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKG 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+ Q  Y + ++R        G ++ L  G+ +G H 
Sbjct: 178 EVRKIAEREHLINAKRKDSQGICFLGQINYNEYLRRYIGE--NPGKVIELETGKQIGEHR 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR GLG   G P FVV  D  ++ + +               + + ++L   
Sbjct: 236 GLWFHTIGQRHGLGFGGG-PWFVVKKDVANNVLYISKGYDPQTAYQKDFKIHDFHFLT-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373
                 VD      KIR + +     +++   D   V  E +  GVA GQ CV Y  D  
Sbjct: 293 ----MPVDMHHVTFKIRHTPEFHSGIIEQTAPDSYTVHAETAIHGVAPGQFCVVY--DEQ 346

Query: 374 EARVLGGGIIS 384
               +G G I+
Sbjct: 347 HHCCIGSGEIT 357


>gi|221217912|ref|ZP_03589379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 72a]
 gi|221192218|gb|EEE18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 72a]
          Length = 355

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLGKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|216264880|ref|ZP_03436872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 156a]
 gi|215981353|gb|EEC22160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 156a]
          Length = 355

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ +  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINNTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|226320481|ref|ZP_03796047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 29805]
 gi|226234123|gb|EEH32838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 29805]
          Length = 355

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+     +
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYIEAI 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|303284375|ref|XP_003061478.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456808|gb|EEH54108.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 384

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 173/391 (44%), Gaps = 41/391 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V +SGGVDSSV   LL+  G+DV    LQ++           C    D+ +AR VC
Sbjct: 1   MKVAVLLSGGVDSSVALTLLQAAGHDVTAFYLQIWFQEDFRNYWDQCPWEDDLSEARAVC 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG--- 137
           D + V   V      + + V+       + G TP P + CN  VKF        +     
Sbjct: 61  DLLRVPLEVVPLTRPYWDLVVSHSVEEISRGRTPNPDMLCNSRVKFGAFREWLAETHPGR 120

Query: 138 ADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +A+GHY       G         D   +  +    D  +DQ+YFL A +Q QL  L 
Sbjct: 121 FARVASGHYAALERPGGPFGGAGDDADADGKVKLVMSGDAHKDQTYFLAALSQAQLEGLS 180

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248
           FP+G + K  +RD+AR  GL  A++ DSQ ICF+ + K+ + V          G IV + 
Sbjct: 181 FPIGGLPKAEIRDIARRAGLPNANRKDSQGICFLGKVKFSEFVAEHLGE--RPGKIVEIE 238

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
            G  +G H G   +TIGQR GLG++ G P +V   D   + V +                
Sbjct: 239 TGLEIGEHRGFWFHTIGQRSGLGLSGG-PWYVCGKDAKRNIVFI---------------- 281

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACV 366
               D    D     F+ + K+R  +      ++   + +G  V  + ++ G+A+GQ  V
Sbjct: 282 --TKDYYAGDKERRAFRLYCKVRHGERRYRCTLKFDPDGEGGRVVLDANDQGLAAGQFAV 339

Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLL 397
           FY         LG G+I  ++R+  ++  +L
Sbjct: 340 FYDG----RECLGSGVI--AERAAPIDVKVL 364


>gi|327398348|ref|YP_004339217.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411]
 gi|327180977|gb|AEA33158.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411]
          Length = 338

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 188/367 (51%), Gaps = 32/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V VA+SGGVDS+  A LLK++G++V+G+TL+LY+                +  A ++ 
Sbjct: 1   MKVAVALSGGVDSATAAFLLKKEGHEVVGITLKLYDDE------------SYIKQAEKIA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  + FDY   F+  VI  F ++Y  G+TP PCV CNR VKF+ LL V  +L  D 
Sbjct: 49  EFLGIEWHCFDYSLEFKKGVIDYFFNTYLNGKTPNPCVVCNRYVKFNYLLEVADKLNCDK 108

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199
           LATGHY R    + +     + +      E+DQSYFL    + Q+  L FPLG++  KE+
Sbjct: 109 LATGHYARISRKLLN-----KPLIAKSPSEKDQSYFLCFLNESQIKKLMFPLGELNSKET 163

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            R +A ++ L +A K DS D+CFV +G Y D++K        EG  + L+G+ + +H GI
Sbjct: 164 TRQIAEKINLSLAQKKDSFDVCFV-RGNYRDLLKNRLKE--KEGYFI-LSGKKIKKHEGI 219

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
            +YT+GQR+GL +A  E L+V  +   +  + +  ++ L    +     N L       A
Sbjct: 220 FSYTVGQRKGLRIAYKEALYVKSIHPKTGNIYLSTKKELYKRTVRASVENLLY------A 273

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
             + FK   K+RS  D     +  +     ++F+        GQ    Y  D     V+ 
Sbjct: 274 PSEKFKAKAKLRSKMDKAFCTITLDKKSFLMEFDHPVFAPTPGQVACVYLEDV----VIL 329

Query: 380 GGIISGS 386
            G I  +
Sbjct: 330 AGFIEEA 336


>gi|145352290|ref|XP_001420484.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580718|gb|ABO98777.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 167/376 (44%), Gaps = 23/376 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSSV  ALL+  G++ +   LQ++           C   +D+  A  
Sbjct: 5   KPLRVAVLLSGGVDSSVALALLRAAGHECVAFYLQIWFQEDFRNTWDQCPWEEDLRVAES 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
           VC+ + V        + + N V+         G TP P V CN  VKF        +   
Sbjct: 65  VCERVGVPLETVPLTDEYWNLVVKDSVEEIRKGRTPNPDVLCNSRVKFGAFREWLARTHP 124

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D +A+GHY         D      +    D  +DQ+YFL   +Q+QL  + FP+G M
Sbjct: 125 GEFDRVASGHYAAVER---ADVGELARLVMSGDTFKDQTYFLADLSQEQLGSVCFPVGGM 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254
            K  +R LA    L  A + DSQ ICF+ + K+ + +        + GDI+ +  G++LG
Sbjct: 182 PKAEIRALAASAELPNAGRKDSQGICFLGKVKFSEFIAEHLGE--MPGDIIEVESGKVLG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL 311
           +H     +TIGQR GL +  G P +V   D  ++ V V               +   NW+
Sbjct: 240 KHRAYWFHTIGQRSGLFL-HGGPWYVAGKDCVNNIVYVTRDYYSLDKARDTFTVAGFNWI 298

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVY---VDFEKSEVGVASGQACVF 367
                    ++G +  VK+R  ++      Q  D DG     V+  + + G+A GQ  VF
Sbjct: 299 SGQEPPLESIEGLR--VKVRHGENIYACSFQFKDVDGERCGEVNIGQDDQGLAPGQYAVF 356

Query: 368 YTSDSNEARVLGGGII 383
           Y  D+     LG G I
Sbjct: 357 YDGDT----CLGCGKI 368


>gi|301162405|emb|CBW21950.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 638R]
          Length = 353

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 164/367 (44%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+     + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELCTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               ++  V D    + + V          G+TP P V CN+ +KF            D+
Sbjct: 58  RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCF-EQQVGKDFDL 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG ++    G+ +G H G 
Sbjct: 172 REIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAVIEFETGKKIGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V      E    +   +++ N++ D  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E +  +  +   KIR + + +   +  +++G  +   +   G+A GQ  V Y ++S    
Sbjct: 289 EGSTGEE-EVTFKIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAESR--V 345

Query: 377 VLGGGII 383
             G G I
Sbjct: 346 CFGSGEI 352


>gi|317154023|ref|YP_004122071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944274|gb|ADU63325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 349

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 169/366 (46%), Gaps = 21/366 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+  VA+SGG+DS +  AL++  G++V+ V  +   S   S +         +      C
Sbjct: 1   MKTAVAVSGGMDSLLALALMRAGGHEVLAVHGRFLPSGPDSDK--------AIAGLAEAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  +V D    F   V+ PFA +Y  G TP PC  CN  +KF  L      LGAD 
Sbjct: 53  ARLGVPLHVADLRREFEREVVAPFADAYRQGRTPNPCAVCNPRMKFGALFRFALSLGADA 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R    + + G    ++ R  D ++DQSYFL     + L    FPLGD+ K  V
Sbjct: 113 LATGHYAR----LEERGPSGLLLTRGGDPDKDQSYFLSLVPIETLRRAHFPLGDICKRDV 168

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
            +    +GL      +SQ+ICFV    Y   + R    +   G I   +G ++GRH G+ 
Sbjct: 169 PETLAGLGLTPPLPGESQEICFVPGDDYQTFLTR-RGNMPGTGPIRLEDGTVIGRHKGLW 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T GQRRGLG+A  EPL+V+      + +IVGP+ SL        ++N++ D      V
Sbjct: 228 RHTQGQRRGLGIAWTEPLYVLDKRVADNTLIVGPKPSLHAPGCVAWQVNFMTDPAGWPEV 287

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                  ++ R  Q   P     +   +   F +     A GQ    Y        VLGG
Sbjct: 288 -----VMLQTRYRQRARPARFAVDGSRLVFHFIEEHTRPAPGQVAAVYD---EAGAVLGG 339

Query: 381 GIISGS 386
           G+I  +
Sbjct: 340 GVIEHA 345


>gi|188994230|ref|YP_001928482.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis ATCC
           33277]
 gi|229486420|sp|B2RHP0|MNMA_PORG3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188593910|dbj|BAG32885.1| putative tRNA 5-methylaminomethyl-2-thiouridylate
           5-methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 361

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 166/374 (44%), Gaps = 20/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V   +SGGVDSSVV   L  +GY      +++    +       C A +D+     + 
Sbjct: 1   MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRI--GMEDEDGYIDCPAEEDIELTTLIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   V D  + +   V+     +   G TP P + CN+ +KF            D 
Sbjct: 59  RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEER-WGYQFDR 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  + L  G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 118 IATGHYATTDLLNG-----KTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A   GL  A + DSQ ICF+ +  Y D ++R       EG I+ L  G+++GRH G 
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGK--KEGRIIELETGKVIGRHQGY 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + ++V      +      I +   +++ +  +
Sbjct: 231 WFHTIGQRKGLGLSGG-PWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAY 289

Query: 317 EDA---VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           E       D      KIR + +     + + + G  ++ E+   G+A GQ CV Y  D  
Sbjct: 290 EAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDED-- 347

Query: 374 EARVLGGGIISGSK 387
                G G+I+  +
Sbjct: 348 HHLCYGSGMITKGR 361


>gi|302307975|ref|NP_984774.2| AEL087Cp [Ashbya gossypii ATCC 10895]
 gi|299789248|gb|AAS52598.2| AEL087Cp [Ashbya gossypii ATCC 10895]
          Length = 410

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 181/393 (46%), Gaps = 41/393 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKAS---KRKGSCCAGQDVYDAR 77
           ++VAMSGGVDSSV AAL     +   V G+ +Q ++    S   + K   C  QD  D  
Sbjct: 29  IIVAMSGGVDSSVCAALYA---HFPKVRGLYMQNWSQTSGSGPVEGKAEPCYEQDWKDIE 85

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-- 135
           +V   +N+     ++E  +   V  P    Y  G TP P + CNR VKF  L     +  
Sbjct: 86  KVGAYLNIPVERVNFERDYWLDVFEPMLQRYQQGYTPNPDIGCNRFVKFGALREHLDKEY 145

Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G   L TGHY R    +    +R   + R     +DQSY+L    ++ L DL  P+G 
Sbjct: 146 GRGNYWLVTGHYAR---ILSPQTRRETHLLRSHYAPKDQSYYLSQVGREALADLLMPMGF 202

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNG- 250
           + K  VR  A E+ L  A K DSQ ICFV   Q G++ + ++         G IV +   
Sbjct: 203 LTKPEVRQWAAELHLPNATKPDSQGICFVNNSQHGRFQNFLQEYLPSSV--GHIVTVEEE 260

Query: 251 ----QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRE--SL 298
               +I G+H GI +YTIGQR G+ +  G+P      +V + D  ++ + IV  R+  +L
Sbjct: 261 SGTRRIWGQHRGIWSYTIGQRVGISLPQGDPKYQGAWYVSHKDPKTNTIEIVKGRDNRAL 320

Query: 299 EVHRIYLREI-NWLGDGLFEDAVVDGF---KCFVKIRSSQDPVPVF-VQRNDDGVYVDFE 353
               + + +  + +        +       + +++ RS Q  V V  +Q  D G  +   
Sbjct: 321 YKDTLSVSDFESLVPPEDLASTLEAAMTNGELYMQFRSLQQAVKVTRLQLQDSGFELQLA 380

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            ++  +A GQ C  Y +D    RVLG G +  +
Sbjct: 381 TAQRAMAPGQYCCLYHND----RVLGSGTVRAT 409


>gi|189462149|ref|ZP_03010934.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
 gi|189431122|gb|EDV00107.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
          Length = 378

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 97/369 (26%), Positives = 160/369 (43%), Gaps = 20/369 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             M +   +SGGVDS+V   LL   GY      +++      +  + SC A +D+  A  
Sbjct: 24  SPMNIAALISGGVDSAVAVHLLCEQGYKPDLFYIKI---GMDTDNELSCTAEEDIELATA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +   + D ++ + + V+         G TP P V CN+ +KF            
Sbjct: 81  TARRYGLQLEIIDLQKEYWDQVVAYTIEKVRNGFTPNPDVMCNKLIKFGCFEQKA-GYAY 139

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FPLG   K+
Sbjct: 140 DKIATGHYASTCELNG-----KTWLATAKDAIKDQTDFLAQINYLQVSKLLFPLGGYMKK 194

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257
            +R +A +  L  A + DSQ ICF+ +  Y D ++R       +G I+ L  G+ +G+H 
Sbjct: 195 EIRHIAAQAKLPSAQRKDSQGICFLGKINYNDFIRRFLGE--RQGSIIELESGKEIGKHR 252

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FVV  D  ++ + V      E    +   L + +++ D 
Sbjct: 253 GFWFHTIGQRKGLGLSGG-PWFVVDKDTENNILYVSHGYDTEQQYSNEFKLTDFHFITDN 311

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +        +   K+R +       +   +   ++   +   G+A GQ  V Y  D   
Sbjct: 312 PWLTE--KEQQVCFKVRHTDGFHQGNLILKNGICHIRSSEKIQGIAPGQFGVIYDKD--A 367

Query: 375 ARVLGGGII 383
              +G G I
Sbjct: 368 HLCIGSGEI 376


>gi|312149442|gb|ADQ29513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi N40]
          Length = 355

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++         G+C   +D+      
Sbjct: 1   MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIW-VEDELSYIGNCPWQEDLNYVEAT 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF            D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY + +       + + ++ +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYAKIQRK-----ESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+I+    G+I+G HNG
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIIEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+ D  
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINDTP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                 + FK  +KIR  +      ++   ++ + +   K + G++ GQ  +FY +    
Sbjct: 291 TN---FENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN---- 341

Query: 375 ARVLGGGII 383
              LGG  I
Sbjct: 342 TECLGGAKI 350


>gi|255008091|ref|ZP_05280217.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis 3_1_12]
 gi|313145808|ref|ZP_07808001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
 gi|313134575|gb|EFR51935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis 3_1_12]
          Length = 353

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 163/367 (44%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +  + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V D    + + V          G+TP P V CN+ +KF            D+
Sbjct: 58  RRYGLELEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCF-EQQVGKDFDL 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +          +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATTLQL-----GEKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG ++ L  G+ +G H G 
Sbjct: 172 REIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAVIELETGKKIGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V      +    +   +++ N++    +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +D+  +      KIR + + +   + ++ DG  +   +   G+A GQ  V Y ++S    
Sbjct: 289 KDSTGEE-DVTFKIRHTPEFIKGRLIQDADGYRIISSEKLQGIAPGQFGVIYDAESR--I 345

Query: 377 VLGGGII 383
             G G I
Sbjct: 346 CFGSGEI 352


>gi|53712700|ref|YP_098692.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81608589|sp|Q64WG8|MNMA2_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|52215565|dbj|BAD48158.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis YCH46]
          Length = 353

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 164/367 (44%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +  + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               ++  V D    + + V          G+TP P V CN+ +KF            D+
Sbjct: 58  RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCF-EQQVGKDFDL 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG ++    G+ +G H G 
Sbjct: 172 REIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAVIEFETGKKIGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V      E    +   +++ N++ D  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E +  +  +   KIR + + +   +  +++G  +   +   G+A GQ  V Y ++S    
Sbjct: 289 EGSTGEE-EVTFKIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAESR--V 345

Query: 377 VLGGGII 383
             G G I
Sbjct: 346 CFGSGEI 352


>gi|309807698|ref|ZP_07701637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169072|gb|EFO71151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 01V1-a]
          Length = 301

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 147/294 (50%), Gaps = 22/294 (7%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           F S Y  G TP P + CN+ +KF   L    +L AD +A GHY ++      D      M
Sbjct: 13  FLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADYIAMGHYAKTVT----DKNGVVHM 68

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
            RP D  +DQ+YFL   TQ+QL    FPL D+ K  VR +A + GL  A K DS  ICF+
Sbjct: 69  MRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQVRMIAEQAGLATAKKKDSTGICFI 128

Query: 224 QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE----PLF 279
            +  + + +       A+ G+IV  +G+I+G+H+G++ YTIGQR GLG+   +    P F
Sbjct: 129 GERNFKNFLSEFLP--AMGGNIVTADGRIVGKHSGLMYYTIGQRSGLGLGGNQSSCAPWF 186

Query: 280 VVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           VV  +   + +IV      + L    +   E+++       D  +    C  K R  Q  
Sbjct: 187 VVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTGLPSNDTTI---HCTAKFRYRQPD 243

Query: 337 VPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
           V V +  N  ++ V+V+F++    V  GQA VFY  +      LGG II  + R
Sbjct: 244 VAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE----ECLGGAIIDKAYR 293


>gi|50312295|ref|XP_456180.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645316|emb|CAG98888.1| KLLA0F24706p [Kluyveromyces lactis]
          Length = 415

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 188/397 (47%), Gaps = 33/397 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYD 75
             K   +VV MSGGVDSSV AAL      +V GV +Q +   ++ ++ +   C  ++  D
Sbjct: 26  PSKFDNIVVGMSGGVDSSVCAALFA-AYPNVHGVYMQNWGKDQSLTRPEEDPCYEKEWKD 84

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           A +V   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L+     
Sbjct: 85  AEKVAKHLNIPVEFVNFEKDYWLNVFAPMLEQYSMGYTPNPDIGCNQFVKFGKLMDHLDV 144

Query: 135 QLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + G +   L  GHY R         +    + R +  ++DQSY+L   +   L  +  P+
Sbjct: 145 KFGKNNYWLVMGHYARILRRDSGPERSEPHLMRGLYQQKDQSYYLSQVSVPSLNQMILPI 204

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VR++A+E+ L  A K DSQ ICFV   Q GK+ + +K         G+I+ ++
Sbjct: 205 GHLTKPEVREMAKEVDLHTATKPDSQGICFVNNSQHGKFKNFLKEYLPMEL--GNIITID 262

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG---PRE 296
                  + G+H GI +YTIGQ+ G+ +  G+P      +V   +K +  +++       
Sbjct: 263 ELTGKKTVWGKHPGIWSYTIGQKIGISLPQGDPRYQGAWYVSEKNKRTREIVIVRGKDNN 322

Query: 297 SLEVHRIYLREINWLGDGLFE----DAVVDGFKCFVKIRSSQDPVPVF-VQ-RNDDGVYV 350
           +L    + ++    L          +  ++     ++ RS Q PV V  V+  N +   +
Sbjct: 323 NLFKDVVTVKHFKILSKNPLSKEELNEAINKETLHMQFRSLQTPVKVTSVEWINSNEFSL 382

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             E+ E  +A GQ C  Y ++    RV+G GII  ++
Sbjct: 383 KLERKERAMAPGQYCCLYVNE----RVIGSGIIDCAR 415


>gi|151941963|gb|EDN60319.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256269696|gb|EEU04967.1| Slm3p [Saccharomyces cerevisiae JAY291]
 gi|259145210|emb|CAY78474.1| Slm3p [Saccharomyces cerevisiae EC1118]
 gi|323338348|gb|EGA79575.1| Slm3p [Saccharomyces cerevisiae Vin13]
          Length = 417

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/403 (30%), Positives = 189/403 (46%), Gaps = 34/403 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L     +
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDE 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L  L  P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAV---VDGFKCFVKIRSSQDPV---PVFVQRNDDG--VYV 350
            ++   +R  N+   G  ED +    +     ++ RS Q PV      + R+ D   + +
Sbjct: 319 ALYSDTIRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITI 378

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
                +  +  GQ+C  Y  D    RVLG G IS    +D   
Sbjct: 379 HLASKQRAITPGQSCCLYIDD----RVLGSGPISHVNNNDTHA 417


>gi|308177899|ref|YP_003917305.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter arilaitensis
           Re117]
 gi|307745362|emb|CBT76334.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter arilaitensis
           Re117]
          Length = 378

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 140/382 (36%), Positives = 195/382 (51%), Gaps = 23/382 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+V+ AMSGGVDS+V AA     G+DV+GV L L +    + R GS  CC  +D  DA R
Sbjct: 1   MKVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTLEDSNDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD + + +YV+D+ +RF   V+  F   Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  ACDKLGIPYYVWDFSDRFAEDVVQDFVDEYEAGRTPNPCMRCNEKIKFAALLEKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY +    V  D +    + R  D  +DQSY L   T +QL    FPL +   K
Sbjct: 120 DAVCTGHYAK----VLRDDEGNPELHRAADWAKDQSYVLGVLTHEQLEHCMFPLAETPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   GL +A+K DS DICF+  G     +          G+IV   G  LG H 
Sbjct: 176 AEVRAEAAARGLTVANKPDSYDICFIPDGDTRGWLAERIE--MKPGEIVDHEGNQLGEHE 233

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G+P FV+ +    ++VIVGP   L V ++    I+W G 
Sbjct: 234 GAQAFTVGQRKGLRLGRPAADGKPRFVLEIRPKENKVIVGPEALLAVDQLRGIRISWAGV 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-----NDDGVYVDFEKSEVGVASGQACVFY 368
            + E    + F C V++R+  DPVP          + D + V+  +   GVA GQ  V Y
Sbjct: 294 PISEVFTGEKFDCMVQVRAHGDPVPAVAHMERSAESHDELVVNLPEGMRGVAPGQTMVVY 353

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
                 +RVLG   I  ++ S+
Sbjct: 354 QG----SRVLGQATIDSARSSE 371


>gi|60680859|ref|YP_211003.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|253563325|ref|ZP_04840782.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
 gi|265762789|ref|ZP_06091357.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|81316073|sp|Q5LFN5|MNMA2_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|60492293|emb|CAH07058.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fragilis NCTC 9343]
 gi|251947101|gb|EES87383.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
 gi|263255397|gb|EEZ26743.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 353

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +  + 
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTAIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               ++  V D    + + V          G+TP P V CN+ +KF            D+
Sbjct: 58  RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCF-EQQVGKDFDL 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG ++    G+ +G H G 
Sbjct: 172 REIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAVIEFETGKKIGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V      E    +   +++ N++ D  +
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E +  +  +   KIR + + +   +  +++G  +   +   G+A GQ  V Y ++S    
Sbjct: 289 EGSTGEE-EVTFKIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAESR--V 345

Query: 377 VLGGGII 383
             G G I
Sbjct: 346 CFGSGEI 352


>gi|284992470|ref|YP_003411024.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Geodermatophilus obscurus DSM 43160]
 gi|284065715|gb|ADB76653.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Geodermatophilus obscurus DSM 43160]
          Length = 357

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 195/373 (52%), Gaps = 24/373 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AAL    G+DV GV L L   R+ + R G   CC+ +D +DARR
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVDAGHDVTGVHLALSPDRQ-TLRSGARGCCSVEDAHDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V D + +  YV+D  ERF   V+  F + YAAG TP PC+ CN  +KFS +L   R LG 
Sbjct: 60  VADELGIPFYVWDLAERFTEDVVEDFVAEYAAGRTPNPCLRCNEKIKFSAVLDRARALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TGH+ R              + R +D ++DQSY L   T  QL    FPLG M K+
Sbjct: 120 DAVVTGHHARLA---------GGELRRSVDADKDQSYVLAVLTADQLAGAVFPLGSMTKQ 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR++A E G  +A K+DS DICF+  G     + R     A  G +V    G  +G H 
Sbjct: 171 RVREIATERGFAVATKADSHDICFIPDGDTRGFLARRLG--AQPGPVVDAATGATVGEHA 228

Query: 258 GIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           G   +T+GQRRGLGVA+G+  P +V+ ++  +  V +G  +   V  +      W G   
Sbjct: 229 GAYGFTVGQRRGLGVAVGDSRPRYVLGIEPVTRTVTIGTADLAGVGEVRTARPTWTG--- 285

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD-SN 373
              A    F   V++R+   PVP  V   DD G+ +     + GVA GQ+ V Y  D   
Sbjct: 286 --TAPALPFAAEVQLRAHGTPVPCEVTAGDDGGLRLLLGSHQRGVAPGQSAVLYAPDAER 343

Query: 374 EARVLGGGIISGS 386
              VLG G +  +
Sbjct: 344 GDLVLGQGTVLAT 356


>gi|154491735|ref|ZP_02031361.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC
           43184]
 gi|154087976|gb|EDN87021.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC
           43184]
          Length = 358

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 169/374 (45%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDK--DGYIDCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEE---KWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A +  L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGK--RTGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN---WLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V      E     +  ++   ++ + 
Sbjct: 229 GYWFHTIGQRKGLGLSGG-PWFVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITED 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            + +   D  +   KIR + D     ++R  D   ++ +    G+A GQ  V Y  D   
Sbjct: 288 PWGEF-ADEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKD--H 344

Query: 375 ARVLGGGIISGSKR 388
              LG G+I   ++
Sbjct: 345 RLCLGSGMIIDEEK 358


>gi|315654863|ref|ZP_07907768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490824|gb|EFU80444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 51333]
          Length = 412

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 186/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL   SR  S+   S      + DA RV 
Sbjct: 11  KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  F  +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 71  DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 130

Query: 141 LATGHYIR-------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +ATGHY R                 VG+       + R   + +DQSY L     + L  
Sbjct: 131 VATGHYARLWRPGQAGLIPVGVPPTVGEGAFPDFALLRGSAIGKDQSYVLAGARAEALAR 190

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             FPLGD+  K + R  A  +G+ +A K DS DICF+  G     ++         G IV
Sbjct: 191 AVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFLRGCIGAAL--GPIV 248

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
             +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V  
Sbjct: 249 DEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTVTE 308

Query: 303 IYLR-EINWLGDG------LFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVYVDF 352
           I     +NWL D          +  +D     ++ R+   PV    V ++   DG  +  
Sbjct: 309 IQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPRAVHLESGTDGTKLQV 368

Query: 353 EKS----EVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                    GVA GQ+ V Y   S   RV+    I+ +
Sbjct: 369 ALPPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 406


>gi|170575385|ref|XP_001893218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Brugia malayi]
 gi|158600895|gb|EDP37948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Brugia malayi]
          Length = 383

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 186/375 (49%), Gaps = 22/375 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV A+SGGVDS+V A LLK+ G+DVIGV +  ++  +A +   +C    D  DA +VC+
Sbjct: 6   KVVCAISGGVDSAVSAYLLKKRGFDVIGVHMVNWD--RAEEDSNNCPQSVDEKDAEKVCN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +  YV ++ +++ N + +    +Y  G T +  V CN+T+KF         +L AD 
Sbjct: 64  HLQIPFYVTNFVDKYWNEIFMYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFDELQADA 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCR---PMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGH+ R+      + +    + R    +D  +DQ++FL   TQ QL    FP+G + K
Sbjct: 124 VATGHFARTSFGDFLENRLETGLIRLLAAVDPIKDQTFFLSTLTQSQLRRSMFPVGSLTK 183

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGR 255
           + VR +A + G+ +IA+K +S  +CF+ + K FD  + +    +      +   G+++  
Sbjct: 184 QQVRQIAIDAGMDEIAEKRESMGLCFIGKRKRFDAFISQYIEPVIGPAKDID-TGKVIFE 242

Query: 256 HNGIINYTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           H GI +YTIG+R  +          LF   LD  +  + V       +L      + E  
Sbjct: 243 HKGIHHYTIGKRITMVPDHCQSAVGLFAAGLDDKTQTLWVCQGSHHPALFAREFVVEEPV 302

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+ +  F DA V   +   + + +   +   + R + G + V         A GQ CVFY
Sbjct: 303 WISECPFGDAGVIKME--FRCQRTHPALLCELTRLEKGLLKVKPYNPIRAAAPGQICVFY 360

Query: 369 TSDSNEARVLGGGII 383
               N++  LGGG I
Sbjct: 361 ----NDSECLGGGEI 371


>gi|6320172|ref|NP_010251.1| Slm3p [Saccharomyces cerevisiae S288c]
 gi|3122982|sp|Q12093|MTU1_YEAST RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;
           AltName: Full=Mitochondrial translation optimization
           protein 2; AltName: Full=Synthetic lethal with MSS4 3
 gi|1279683|emb|CAA96456.1| unknown [Saccharomyces cerevisiae]
 gi|1431012|emb|CAA98591.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|48478823|gb|AAT44736.1| mitochondrial Mto2p [Saccharomyces cerevisiae]
 gi|190405047|gb|EDV08314.1| hypothetical protein SCRG_00535 [Saccharomyces cerevisiae RM11-1a]
 gi|207346911|gb|EDZ73261.1| YDL033Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|285810996|tpg|DAA11820.1| TPA: Slm3p [Saccharomyces cerevisiae S288c]
          Length = 417

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 123/403 (30%), Positives = 189/403 (46%), Gaps = 34/403 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L     +
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDE 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L  L  P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAV---VDGFKCFVKIRSSQDPV---PVFVQRNDDG--VYV 350
            ++   +R  N+   G  ED +    +     ++ RS Q PV      + R+ D   + +
Sbjct: 319 ALYSDTMRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITI 378

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
                +  +  GQ+C  Y  D    RVLG G IS    +D   
Sbjct: 379 HLASKQRAITPGQSCCLYIDD----RVLGSGPISHVNNNDTHA 417


>gi|12045151|ref|NP_072962.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma genitalium G37]
 gi|1723144|sp|P47537|MNMA_MYCGE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3844874|gb|AAC71516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma genitalium G37]
 gi|166078872|gb|ABY79490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 367

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 29/377 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---------SCCAGQ 71
             V + +SGGVDS+V A LLK+   +VIGV ++ ++    +   G          C + Q
Sbjct: 6   KTVFIGLSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQ 65

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D   A+++ +++ +     +  E + N V +P   S+  G TP P + CNR +KF  L  
Sbjct: 66  DFQQAKKIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHD 125

Query: 132 VTRQLGADVL-ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +Q+  + L ATGHY +  +      + + ++  P D  +DQ+YFL    ++Q  ++ F
Sbjct: 126 FCKQINPNSLFATGHYAKINMI-----ENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIF 180

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249
           PL D+KK +VR++ARE   ++ADK DS  ICF+ +  + D +K        +G I     
Sbjct: 181 PLADLKKITVRNIARENNWEVADKKDSTGICFIGERHFSDFLKNYLP--VKKGLIKDWKT 238

Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIV-GPRESLEVHRIYLRE 307
            Q +  H+G+  YTIGQR GL    + +  FVV  D  ++ + V   +E L    I L +
Sbjct: 239 KQTISEHDGVWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQ 298

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366
            NWL             +  V+IR +Q P    ++  +D+ + + F+   + VASGQ  V
Sbjct: 299 FNWL-----YTPKQLPSQVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGV 353

Query: 367 FYTSDSNEARVLGGGII 383
            YT D      LG G+I
Sbjct: 354 LYTLD---QICLGAGLI 367


>gi|34540110|ref|NP_904589.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis W83]
 gi|81416613|sp|Q7MAW9|MNMA_PORGI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|34396421|gb|AAQ65488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas gingivalis W83]
          Length = 361

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 166/374 (44%), Gaps = 20/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V   +SGGVDSSVV   L  +GY      +++    K       C A +D+     + 
Sbjct: 1   MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMEDK--DGYIDCPAEEDIELTTLIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   V D  + +   V+     +   G TP P + CN+ +KF            D 
Sbjct: 59  RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEER-WGYQFDR 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  + L  G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 118 IATGHYATTDLLNG-----KTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A   GL  A + DSQ ICF+ +  Y D ++R       EG I+ L  G+++GRH G 
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGK--KEGRIIELETGKVIGRHQGY 230

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + ++V      +      I +   +++ +  +
Sbjct: 231 WFHTIGQRKGLGLSGG-PWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAY 289

Query: 317 EDA---VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
           E       D      KIR + +     + + + G  ++ E+   G+A GQ CV Y  D  
Sbjct: 290 EAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDED-- 347

Query: 374 EARVLGGGIISGSK 387
                G G+I+  +
Sbjct: 348 HHLCYGSGMITKGR 361


>gi|312070856|ref|XP_003138339.1| hypothetical protein LOAG_02754 [Loa loa]
 gi|307766493|gb|EFO25727.1| hypothetical protein LOAG_02754 [Loa loa]
          Length = 383

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 184/377 (48%), Gaps = 26/377 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV A+SGGVDS+V A LLK+ G+DVIGV +  ++  +    K  C    D  DA +VC+
Sbjct: 6   KVVCAISGGVDSAVSAYLLKKRGFDVIGVHMVNWDRVEEDSSK--CPQSVDEKDAEKVCN 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            + +  YV ++ +R+ N +      +Y  G T +  V CN+T+KF         +L AD 
Sbjct: 64  HLQIPFYVANFVDRYWNEIFTYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFDELQADA 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCR---PMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +ATGH+ R+      + +    + R    +D  +DQ++FL   TQ QL    FP+G + K
Sbjct: 124 VATGHFARTSFGDFLEKRLETGLIRLLAAVDPIKDQTFFLSTLTQSQLRRSMFPIGSLTK 183

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGR 255
           + VR +A ++G+ +IA+K +S  +CF+ + K+FD  + +    +      +   G+++  
Sbjct: 184 QQVRQIAVDVGMAEIAEKPESMGLCFIGKRKHFDTFINQYIEPVIGPAKDID-TGKVVFE 242

Query: 256 HNGIINYTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309
           H GI +YTIG+R  +          LF V LD  +  + V       +L      + E  
Sbjct: 243 HKGIHHYTIGKRITMVPDHCQSAVGLFAVGLDGKTQTLWVCQGSHHPALFAREFVVEEPL 302

Query: 310 WLGDGLFED--AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366
           W+ +    D   +   F+C      +   +   + R + G + V         A GQ CV
Sbjct: 303 WISECPLGDTGTIKTEFRCQ----RTHPALLCEITRLEKGLLKVKPYNPIRAAAPGQICV 358

Query: 367 FYTSDSNEARVLGGGII 383
           FY    N++  LGGG I
Sbjct: 359 FY----NDSECLGGGEI 371


>gi|218264372|ref|ZP_03478229.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222070|gb|EEC94720.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
           DSM 18315]
          Length = 358

 Score =  342 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 169/374 (45%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV   LK  GYD     +++    K       C A +D+     + 
Sbjct: 1   MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDK--DGYIDCPAEEDIEITSYIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   +    + + + V+     S   G TP P + CN+ +KF        + G D 
Sbjct: 59  KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEE---KWGKDF 115

Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY  +    G     +  +    D  +DQ+ FL   T+ Q+  L FP+G + K 
Sbjct: 116 DKIATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A +  L  A + DSQ ICF+ +  Y D ++R        G IV L  G++LG+HN
Sbjct: 171 EVRAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGK--RTGKIVELETGKVLGKHN 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN---WLGDG 314
           G   +TIGQR+GLG++ G P FV+  D   + + V      E     +  ++   ++ + 
Sbjct: 229 GYWFHTIGQRKGLGLSGG-PWFVIKKDIKRNVIYVSNGYDPETQYGKIINMHGFDFITED 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            + +   D  +   KIR + D     ++R  D   ++ +    G+A GQ  V Y  D   
Sbjct: 288 PWGEF-EDEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKD--H 344

Query: 375 ARVLGGGIISGSKR 388
              LG G+I   ++
Sbjct: 345 RLCLGSGMIIDEEK 358


>gi|316971871|gb|EFV55594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Trichinella spiralis]
          Length = 717

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 21/368 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V  A+SGG+DS+V A LLK  G+DVIGV ++ ++        G CC+ +D+ DA++VC  
Sbjct: 5   VACAISGGIDSAVTAHLLKARGFDVIGVFMKNWD---LIDEFGYCCSDKDLLDAQKVCRH 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + +  +   +   + + V       Y  G+TP P + CNR +KF    S     L  D +
Sbjct: 62  LKIPFHEVHFINEYWDDVFTNLLDGYVIGKTPNPDILCNRLIKFDLFFSYCMHTLKVDAV 121

Query: 142 ATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGHY RS   R       ++   + RP D  +DQ+YFL    Q  L    FPL +  K+
Sbjct: 122 ATGHYARSSFGRFLENFSPEKNAKLFRPTDKLKDQTYFLCQIPQASLRRTMFPLANWLKK 181

Query: 199 SVRDLAREMGLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRH 256
            VR +A  +G+   + K +S  IC + +  +   +      +  +G  V ++  + +G H
Sbjct: 182 DVRMMAERIGMGWLNAKKESYGICMIGKRNFKHFISDYV--MPKKGFFVDVDSQKKVGEH 239

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313
            GI  +T GQR  +      P FV  +D   S + V       SL    +   +  W+ +
Sbjct: 240 EGIHLFTRGQRVKIPGGKC-PYFVSKIDPVDSTIYVCCYNFHPSLYASSVQTLQPYWIEE 298

Query: 314 GLFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTS 370
              +        KC  K +         V++     G+ V+ +     +++GQ  +FY  
Sbjct: 299 QEPQVLKESRKLKCEFKYQHVLRSTSCIVKKLPSELGLQVELKHPVRAISAGQYAIFYND 358

Query: 371 DSNEARVL 378
              +   L
Sbjct: 359 ---QDECL 363


>gi|253828114|ref|ZP_04870999.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511520|gb|EES90179.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Helicobacter canadensis MIT 98-5491]
          Length = 349

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 194/372 (52%), Gaps = 36/372 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ MSGGVDSS  A LL++ GY V G+ L+L++  +               + ++  
Sbjct: 2   KKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEKHDYYT--------RNIQKCA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++N+ + + D  E F+ +V   F  SY  G TP PC  CN  VKF+    + + LG + 
Sbjct: 54  ESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCEF 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +         R  + + +D  +DQSYFLF    + +  + FPLGD KKE +
Sbjct: 114 VATGHYAQIK-------NGR--IAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEEI 164

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + +A +    +G  +    DSQ+ICFV+   Y DV+K+ +     +GD++   G  +G H
Sbjct: 165 KPIALKELPWLG-TLETYKDSQEICFVENS-YIDVLKKHH-KTEQKGDVLDSKGNKIGTH 221

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +     P +V+ ++   + +I G +E L  +++    ++   +  
Sbjct: 222 KGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKVQALNLSLPKEWF 281

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSD 371
            ++ V+D   C VKIR     +P  +    +G    +  + ++S  GVA+GQA V Y  +
Sbjct: 282 QDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGVANGQALVLYNGN 338

Query: 372 SNEARVLGGGII 383
                VLGGG I
Sbjct: 339 ----EVLGGGFI 346


>gi|13508161|ref|NP_110110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pneumoniae M129]
 gi|2496370|sp|P75365|MNMA_MYCPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|1674103|gb|AAB96067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pneumoniae M129]
 gi|301633672|gb|ADK87226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma pneumoniae FH]
          Length = 370

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 169/383 (44%), Gaps = 29/383 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN---------SRKASKRKGSCCA 69
           ++  V V +SGGVDS+V A LLK+   +VIG+ ++ ++          R  ++ K  C +
Sbjct: 2   QNKTVFVGISGGVDSAVSALLLKQQYREVIGIFMECWDNTLNNDQLGHRAFNEHKSGCSS 61

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D  +A+ +   + +     +  E +   V +P   ++  G TP P + CNR +KF  +
Sbjct: 62  KEDFREAQAIAQLLGIKLIKQNLVEPYWKQVFLPTIDAFKNGLTPNPDMLCNRLIKFGLM 121

Query: 130 LSVTRQLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +QL  +   ATGHY             + ++  P D  +DQ+YFL      QL D+
Sbjct: 122 RDYCKQLDPNSDFATGHYAALSWD-----NNQPLLAIPKDKHKDQTYFLAHVKPAQLQDV 176

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FPL  + K  VR +A      +A K DS  ICF+ +  + D +K         G I   
Sbjct: 177 VFPLAHLLKTEVRQIALAHHFSVATKKDSTGICFIGERHFSDFLKNYLP--VKPGVIYDW 234

Query: 249 -NGQILGRHNGIINYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPR-ESLEVHRIYL 305
              + LG H G+  YT GQR GL +       FVV  D  ++ + V    E L+   I L
Sbjct: 235 KTQRQLGSHEGVWFYTTGQRSGLNLGGQAARNFVVEKDLKTNTLYVSSDPEDLQRRGITL 294

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364
              NWL                V+IR +Q  V   +    +  V V  ++    V +GQ 
Sbjct: 295 SHFNWL-----YQPNPLTQTVLVRIRHAQPLVQGHITVQPNNVVQVQLDQPIDRVTNGQY 349

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            V Y   +     LG GII+ S+
Sbjct: 350 GVLY---TQNGICLGSGIITASQ 369


>gi|261367050|ref|ZP_05979933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Subdoligranulum variabile DSM 15176]
 gi|282571170|gb|EFB76705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Subdoligranulum variabile DSM 15176]
          Length = 348

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 174/374 (46%), Gaps = 29/374 (7%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
             +   K  +V++ MSGGVDSSV   +L+  G+ V G  ++   +               
Sbjct: 3   GFNTFEKQYKVLMGMSGGVDSSVAVRILQEQGFAVQGAVIRFSPAHDG-----------A 51

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V  A+    T+ +  ++ D  + F   VI+PF  SY AG TP PC+ CN  VKF  L   
Sbjct: 52  VSAAQESAKTLQIPLHIIDARDAFEQHVILPFCESYCAGMTPNPCILCNPLVKFRLLAEK 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LG   +ATGHY R  +    D K    +  P    RDQSY L+   Q+ L  L  PL
Sbjct: 112 ANELGCQFIATGHYARVEV----DHKGVSRIAVPQSTARDQSYMLYRLPQEILSKLILPL 167

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+ +K+ +R++AR++ L  AD  DS +ICF+  G Y   + R        G  +   G+ 
Sbjct: 168 GEFEKDDIREMARDIHLACADAPDSMEICFIPDGDYAAYI-RSRGFSPKTGRFIGPQGED 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           LG H G+ +YT+GQR+GLG+A G PLFV  +   +  + +          I L ++    
Sbjct: 227 LGPHAGVDHYTVGQRKGLGIAAGRPLFVKAI-LENGDIQLAETGQEYSTHITLCDL---- 281

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
               +   +      VKIRS+  P P      D    V F       A GQ+ VFY    
Sbjct: 282 -TTPDGQPLPAGDYLVKIRSAAKPSPC---LYDGAGAVRFPDPVRAPAPGQSAVFYRD-- 335

Query: 373 NEARVLGGGIISGS 386
               V GGGII+ +
Sbjct: 336 --GLVFGGGIIAET 347


>gi|50955069|ref|YP_062357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71658015|sp|Q6AEE4|MNMA_LEIXX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|50951551|gb|AAT89252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 366

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 135/378 (35%), Positives = 181/378 (47%), Gaps = 18/378 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G++V+GV L L             CC  +D  DA+R 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLALSRLPGTLHTGSRGCCTIEDSMDAQRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I + +YV+D+ ERF   V+  F + Y+AG TP PC+ CN  +KF+ LL     LG D
Sbjct: 61  ANVIGIPYYVWDFSERFALDVVDDFIAEYSAGRTPNPCMRCNEKIKFAALLEKALDLGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            + TGHY         D    R + R     +DQSY L   T  QL    FPLG    K 
Sbjct: 121 AVCTGHYASIVT----DADGNRELHRASAWAKDQSYVLGVLTADQLAHSMFPLGVTPSKA 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL +A K DS DICF+  G     +       A  GDI+  +G  +G H G
Sbjct: 177 EVRAEAAARGLTVAAKPDSHDICFIPDGDTRGWLAERVG--AETGDILDRSGARIGTHEG 234

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQR+GL +      G P FV+ +    + V+VGP+E+L++  I      W G  
Sbjct: 235 AHAYTVGQRKGLNIGFPSPDGRPRFVLEVRPKDNTVVVGPKEALDIAEIAGARYTWAGTP 294

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                    F C V+IR+  DPVP   +     + +  +    GVA GQ  V Y      
Sbjct: 295 PAS--PDTPFACEVQIRAHADPVPAVARVAGGELVIRPDAPLNGVAPGQTAVVYAG---- 348

Query: 375 ARVLGGGIISGSKRSDAV 392
            RVLG   I  +  +  V
Sbjct: 349 TRVLGQTTIDRAVSAVPV 366


>gi|323305735|gb|EGA59475.1| Slm3p [Saccharomyces cerevisiae FostersB]
          Length = 417

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 123/403 (30%), Positives = 188/403 (46%), Gaps = 34/403 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L     +
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGXLREWLDE 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L  L  P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAV---VDGFKCFVKIRSSQDPV---PVFVQRNDDG--VYV 350
            ++    R  N+   G  ED +    +     ++ RS Q PV      + R+ D   + +
Sbjct: 319 ALYSDTXRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITI 378

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
                +  +  GQ+C  Y  D    RVLG G IS    +D   
Sbjct: 379 HLASKQRAITPGQSCCLYIDD----RVLGSGPISHVNNNDTHA 417


>gi|256832943|ref|YP_003161670.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Jonesia denitrificans DSM 20603]
 gi|256686474|gb|ACV09367.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Jonesia denitrificans DSM 20603]
          Length = 423

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 200/426 (46%), Gaps = 53/426 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AAL    G+DV+GV + L  +R         CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAALAVEAGHDVVGVHMALSRNRNQFRSGSRGCCSIEDASDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV+D  E+F + V+  F S Y AG TP PCV CN  +KF  LL     LG D
Sbjct: 61  ADILGIPYYVWDLSEKFEDTVVADFISEYEAGRTPNPCVRCNEHIKFEALLDKAMALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRR----RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            +ATGHY +       D   +    R + R  +  +DQSY L      +L +  FPLG  
Sbjct: 121 AVATGHYAQIIDRDTTDVHGQPTVIRELHRSPNDAKDQSYVLAVMGPDRLKNAIFPLGGY 180

Query: 196 -KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
             K+ VR  A   GL +++K DS DICFV  G     ++      +  G+++  +G ++G
Sbjct: 181 ASKDEVRAEAERRGLSVSNKPDSYDICFVADGDTKGFLRDRLG--SRPGEVLDTDGNVVG 238

Query: 255 RHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H+G   YT+GQR+GL +      G+P +V+ +    + VIVGP E L V+RI   +  W
Sbjct: 239 THDGAYAYTVGQRKGLALGRPAEDGKPRYVLGVSTRDNTVIVGPSELLSVNRIVGDKAVW 298

Query: 311 LGDGLFEDAVV-----DGFKCFVKIRSSQDPVP--------------------------V 339
               +  DA +     D F    ++R+    +P                           
Sbjct: 299 FATDILTDASLTTEGSDWFAIEGQVRAHGAALPGRARIVPLDRARDLMPAGREELAAECT 358

Query: 340 FVQRNDDG------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
            V+  D G      V V+ +    GVA+GQ+ V Y       RV+G   +  S R   + 
Sbjct: 359 RVEGADPGHDHTALVEVELQSPLRGVAAGQSIVLYRG----TRVIGQATVVASDRKATLP 414

Query: 394 ESLLSV 399
               + 
Sbjct: 415 TPQRAA 420


>gi|154173866|ref|YP_001408766.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter curvus 525.92]
 gi|205811591|sp|A7GZX4|MNMA_CAMC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112802625|gb|EAT99969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter curvus 525.92]
          Length = 339

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 193/369 (52%), Gaps = 35/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS++ A +LK  G+++ G  ++L+               +++   ++V 
Sbjct: 1   MKIMVAMSGGVDSTMTAKILKEAGHEIEGCYMKLHQKP--------GYHEENIRKVKKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D +++F   V  PF   Y  G+TP PC  CNR +K   LL+  +Q G + 
Sbjct: 53  EYLGIKVHILDLQDKFNEFVYDPFVRLYKEGKTPNPCALCNRFIKLGALLNFAKQNGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY++       DG     +    D  +DQSYFL    ++ L D+ FPLGD  K  +
Sbjct: 113 LATGHYVQII-----DG----FVTMAKDPSKDQSYFLAQVPKEVLKDVIFPLGDKFKADI 163

Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LARE+ +  + A + +S +ICFV+      + K  N  +   G++V  NG ++GRH G
Sbjct: 164 KELAREVPVLNEFATQPESSEICFVEDTYIEILNKHYNTNL--PGNVVDKNGNVIGRHQG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++ + + ++VG ++ L    + L  +N   D    
Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLKINADKNEIVVGSKDDLAQKIVELENVNLFIDE--- 278

Query: 318 DAVVDGFKCFVKIRSSQD--PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               D F+C  KIR         V + + +    V   ++ +GVA GQ CV Y  +    
Sbjct: 279 ----DEFECETKIRYRSPKLEASVKIDKQNKTAVVALSQNALGVAQGQLCVMYDGE---- 330

Query: 376 RVLGGGIIS 384
           RV+  G I 
Sbjct: 331 RVIASGFIK 339


>gi|88855226|ref|ZP_01129891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine actinobacterium PHSC20C1]
 gi|88815754|gb|EAR25611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine actinobacterium PHSC20C1]
          Length = 375

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 192/372 (51%), Gaps = 33/372 (8%)

Query: 44  GYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101
           G++V+GV L L + +  + R G   CC  +D  DA+R  + I + +YV+D+ ERF+  V+
Sbjct: 14  GHEVVGVHLAL-SRQPGTLRTGARGCCTIEDSMDAQRAANIIGIPYYVWDFSERFKLDVV 72

Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             F + Y+AG TP PC+ CN  +KF+ LL     LG D +ATGHY      + +D    R
Sbjct: 73  DDFIAEYSAGRTPNPCMRCNERIKFAALLEKAVALGFDAVATGHYAN----IVEDENGNR 128

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDI 220
            + R     +DQSY L   T +QL    FPLG    K+ VR  A E G  +A+K DS DI
Sbjct: 129 ELHRAAAWAKDQSYVLGVLTTEQLAHSMFPLGATPSKDEVRAEAAERGFSVANKPDSHDI 188

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA----MGE 276
           CF+  G     +   +   A +G+I+  +G +LG+H G + +TIGQR+GL V      G+
Sbjct: 189 CFIPDGNTRGWLA--DKVGAEQGEILDRSGDVLGKHEGALAFTIGQRKGLNVGYPTDDGK 246

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA----VVDGFKCFVKIRS 332
           P FV+ +   +++V+VGPRE+L +  I   + +W G             + F+C V++R+
Sbjct: 247 PRFVLEIRPKTNQVVVGPREALALAEIAGDKYSWAGLDPLASGLISQPGESFECHVQVRA 306

Query: 333 SQDPVPVFVQ-----RNDDG------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
             DP+P   Q      + DG      + V   +   GV+ GQ  V Y       RVLG  
Sbjct: 307 HSDPMPAVAQVTVAGVDADGNELVSELIVTPNEPLNGVSPGQTAVLYVG----TRVLGQC 362

Query: 382 IISGSKRSDAVE 393
            I+ +  +   E
Sbjct: 363 TIARTVSAVPAE 374


>gi|50556890|ref|XP_505853.1| YALI0F25069p [Yarrowia lipolytica]
 gi|49651723|emb|CAG78664.1| YALI0F25069p [Yarrowia lipolytica]
          Length = 399

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 177/384 (46%), Gaps = 41/384 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  V VAMS GVDSSV AAL+    Y   V GV ++ ++         S CA  D  D +
Sbjct: 36  NDHVYVAMSAGVDSSVTAALMAER-YKGRVTGVFMRNWSPD-------SKCAEADWNDVQ 87

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           +VC  I++       E+ +   V  P    Y  G TP P V CNR +KF  L    +   
Sbjct: 88  QVCAHIDIPAVNLSLEKEYWLEVFEPMLERYRQGLTPNPDVSCNRYIKFGSLKHRLKDRH 147

Query: 137 ------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                 G   LATGHY R       D      + RP  L +DQSY+L +     L ++ F
Sbjct: 148 ENSGMEGDWWLATGHYARVMT----DESGTPGLFRPKHLAKDQSYYLSSVNSDSLRNVMF 203

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL 248
           PL D  K  +R++A    L +A K DSQ +CFV   Q K+ D +          G+++  
Sbjct: 204 PLSDYLKPEIREMAHAYKLHVASKPDSQGLCFVSQDQRKFRDFLSDYI--STTPGNVITE 261

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEV 300
            G+++G+HNG+ N T+GQ+ G+ +  G P      FV   + +++ +++   G   SL  
Sbjct: 262 EGEVVGQHNGLWNATVGQKSGICLPQGNPKYRGSWFVKEKNIDTNELVIVKGGNHPSLFS 321

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359
             I  +  +WLG      A + G    ++ RS  +PV +  +    + + +        V
Sbjct: 322 SNIKAKYFSWLGTKP---ADLSGMNLTIQFRSLMEPVAITNLAIEGEDIAIRTAVPVRAV 378

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           + GQ  V Y  D    RVLG G+I
Sbjct: 379 SPGQNLVLYHED----RVLGCGVI 398


>gi|150951311|ref|XP_001387616.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149388488|gb|EAZ63593.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 356

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 171/375 (45%), Gaps = 35/375 (9%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MS GVDSSV A +  +   +V G+ +  ++       + + C  +D  D ++VC  + + 
Sbjct: 1   MSSGVDSSVAAGIYAKKYKNVRGIYMANWS-------QTAKCTERDWNDVQKVCHDLKIP 53

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR--QLGADVLA 142
               ++E+ + N V  P  + Y  G TP P   CN+ VKF  ++     +  +     L 
Sbjct: 54  CERVNFEKEYWNDVFQPMLNMYEKGLTPNPDTGCNKYVKFGCMIDHLTAKFPRDKKWWLV 113

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R  L+       +  + R    ++DQSY+L +  Q+ L  +  P+G   K  VR+
Sbjct: 114 TGHYARVMLH---QPSGQYHLLRAYSKDKDQSYYLSSIPQEALSRVLMPIGHYVKPDVRE 170

Query: 203 LAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           LA+E+ L ++ K DSQ +CFV  +Q  + D +          G+IV  +G++ G+H G+ 
Sbjct: 171 LAKELNLHVSSKPDSQGLCFVSQEQNSFRDFLNDYIE--PNPGNIVTEDGKVWGKHQGLW 228

Query: 261 NYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312
           + TIGQ+  + +  G+P      FV   +  ++ +++        L    + + +  W+ 
Sbjct: 229 HATIGQKSSISMPQGDPQYKGVWFVSEKNFETNELVIVRGRDNPKLYKQEVNVDDFQWMN 288

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
                       +   + RS Q P+ V  + R      +   +    +A GQ  V Y  +
Sbjct: 289 SDNS----DSSSEITFQYRSLQTPIKVESMARKGANYTIKLAEKVRALAPGQNVVLYRGN 344

Query: 372 SNEARVLGGGIISGS 386
               +VLG G+I  +
Sbjct: 345 ----QVLGSGVIGKA 355


>gi|323349485|gb|EGA83709.1| Slm3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 417

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 123/403 (30%), Positives = 188/403 (46%), Gaps = 34/403 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L      
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDX 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L  L  P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAV---VDGFKCFVKIRSSQDPV---PVFVQRNDDG--VYV 350
            ++   +R  N+   G  ED +    +     ++ RS Q PV      + R+ D   + +
Sbjct: 319 ALYSDTIRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITI 378

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
                +  +  GQ+C  Y  D    RVLG G IS    +D   
Sbjct: 379 HLASKQRAITPGQSCCLYIDD----RVLGSGPISHVNNNDTHA 417


>gi|299141829|ref|ZP_07034964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris C735]
 gi|298576680|gb|EFI48551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris C735]
          Length = 366

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 162/372 (43%), Gaps = 20/372 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ + +SGGVDSSVV   +   G       + +       K +  C + +D+  A  
Sbjct: 8   KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMI---GPEEKEEWDCTSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + +       V D  + + + V         AG TP P V CNR +KF            
Sbjct: 65  LTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFDEKI-GHDY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 124 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYGWQLRKAIFPIGHFEKN 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +G H 
Sbjct: 179 EVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESV--GDVIELETGKKIGEHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG   G P FVV  D   + + V               + + +     
Sbjct: 237 GLWFHTIGQRKGLGFGGG-PWFVVKKDVERNILYVSHGYDPETAYKQDFKIHDFHATTYC 295

Query: 315 LFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDS 372
               A+ +   +   KIR + + +P  +++  +  YV   +    GVA GQ CV Y  D+
Sbjct: 296 PEGTALPELPERITFKIRHTPEYLPATIEKTGENAYVIHADSKIHGVAPGQFCVVY--DA 353

Query: 373 NEARVLGGGIIS 384
                 G G I+
Sbjct: 354 QHHYCYGSGEIT 365


>gi|260912505|ref|ZP_05919040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633384|gb|EEX51539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 358

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 157/371 (42%), Gaps = 25/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  ++ V +SGGVDSSVV     R G       +++         +  C + +D+  A  
Sbjct: 7   QGKKIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKI---GPEEAEEWDCASEEDLEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + +   V         AG TP P V CNR +KF       R    
Sbjct: 64  VAKRFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFHEK-RGHEY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     ++ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 123 DLIATGHYAQTEWIDG-----KKWLVTSPDPVKDQTDFLAQIYDWQLQKAIFPIGHYQKG 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257
            VR++A    L  A + DSQ ICF+ +  Y D ++R        G+++ L   + +G H 
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGKINYNDYIRRFLGE--NPGEVLELESEKKIGMHR 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR GLG   G P + V  D   + + V               + +++ L   
Sbjct: 236 GLWFHTIGQRHGLGFGGG-PWYAVKKDVERNVLFVSKGYEPATAYKKGFKVHDLHLLT-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK-SEVGVASGQACVFYTSDSN 373
               A +DG     KIR + +     ++   DG Y+   +    GVA GQ CV Y  +  
Sbjct: 293 ----APLDGLDVTFKIRHTPEYHRAQLEPLPDGGYIVHAEAPMQGVAPGQFCVIYDKE-- 346

Query: 374 EARVLGGGIIS 384
             R  G   I+
Sbjct: 347 HHRCFGSAEIA 357


>gi|224026934|ref|ZP_03645300.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
           18228]
 gi|224020170|gb|EEF78168.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
           18228]
          Length = 385

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 161/367 (43%), Gaps = 20/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDS+V   LL   GY      +++      +    SC A +D+  A    
Sbjct: 30  MNLAALISGGVDSAVAVHLLCEQGYKPDLFYIRI---GMDTDDGLSCTAEEDIELATATA 86

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V D ++ + + V+         G TP P V CN+ +KF            D 
Sbjct: 87  RKYGLKLEVVDLQQEYWDRVVAYTIDKVRQGFTPNPDVMCNKLIKFGCFEEKA-GHAYDR 145

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +      + + +  +    D  +DQ+ FL      Q+  L FPLG + K+ V
Sbjct: 146 IATGHYASTC-----EREGKVWLATAKDPVKDQTDFLAQIDYLQVSRLLFPLGGLMKQEV 200

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259
           R+ A    L  A + DSQ ICF+ +  Y D ++R        G IV L  G+ +G H G 
Sbjct: 201 RETALAARLPSARRKDSQGICFLGKINYNDFIRRFLGE--RPGAIVELESGREIGTHKGF 258

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V            +  L + +++ +  +
Sbjct: 259 WFHTIGQRKGLGLSGG-PWFVVDKDPEKNLLFVSRGYDTVHQYGRKFRLTDFHFITENPW 317

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            +A     +   KIR +   +P  ++    G  V+      G+A GQ  V Y  ++    
Sbjct: 318 PEA--GEQEICFKIRHTDQFLPGVIRPAGTGYEVESPHLIQGIAPGQFGVIYDREAR--L 373

Query: 377 VLGGGII 383
            +G G I
Sbjct: 374 CIGSGEI 380


>gi|313204968|ref|YP_004043625.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
 gi|312444284|gb|ADQ80640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paludibacter propionicigenes WB4]
          Length = 353

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 168/367 (45%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  +LK  GY      +++            C + +D+  A  + 
Sbjct: 1   MNIATLLSGGVDSSVVVHMLKESGYTPSLFYIKI---GMDDDELLHCTSEEDIEMASLIA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                S  V D  + + + V+         G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGCSLDVVDLHKDYWDNVVSYTIEKVKQGLTPNPDVMCNKLIKFGVFEQRVGK-DFDK 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +      +   +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATTL-----EKNGKVYLSTAKDPIKDQTDFLAQINSLQVSKLMFPIGHLMKNEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           RD+A +  L  A + DSQ ICF+ +  Y D ++R        G IV L  G+ILG+HNG 
Sbjct: 172 RDIATKANLPSAKRQDSQGICFLGKVNYNDFIRRYLGE--KSGPIVELETGKILGKHNGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316
             +T+GQR+GLG++ G P +V+  D  ++ V        E+   +   +R+ +++ D  +
Sbjct: 230 WFHTVGQRKGLGLSGG-PWYVIKKDVAANIVYASKGFDAEAQYGYEFSMRDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E+   +      KIR + D     + +  +G  +   +   G+A GQ  V Y ++S    
Sbjct: 289 ENRRSE-IDVTFKIRHTPDFTKGKIIQTPEGYRLISTERLQGIAPGQFGVVYDAESR--I 345

Query: 377 VLGGGII 383
            +G G I
Sbjct: 346 CVGSGEI 352


>gi|323309474|gb|EGA62685.1| Slm3p [Saccharomyces cerevisiae FostersO]
          Length = 417

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 122/403 (30%), Positives = 187/403 (46%), Gaps = 34/403 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L     +
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDE 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L     P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSXLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAV---VDGFKCFVKIRSSQDPV---PVFVQRNDDG--VYV 350
            ++    R  N+   G  ED +    +     ++ RS Q PV      + R+ D   + +
Sbjct: 319 ALYSDTXRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITI 378

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
                +  +  GQ+C  Y  D    RVLG G IS    +D   
Sbjct: 379 HLASKQRAITPGQSCCLYIDD----RVLGSGPISHVNNNDTHA 417


>gi|255692219|ref|ZP_05415894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260622083|gb|EEX44954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 355

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 167/368 (45%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMEGAEYMDCSAEEDIELSAATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  + D+ + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEIVDFHKEYWENVATYAIGKIRQGLTPNPDVMCNKLIKFGCFEQRIGK-EFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +   +  DGK    +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATT---IQRDGKV--WLGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ LG H+G 
Sbjct: 172 REIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLGE--REGVIVELETGKKLGTHHGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   +R+ +++ D ++
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDIQENIIYVSRGYGVETQYGNEFQMRDFHFITDNIW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + +      + + D+  ++   +   G+A GQ  V Y  ++   
Sbjct: 289 KGQDKE-VDITFKIRHTPEFTKGKLIMKGDNQFHILSSEKLQGIAPGQFGVIYDKEAR-- 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 ICVGSGEI 353


>gi|184200523|ref|YP_001854730.1| tRNA-specific 2-thiouridylase MnmA [Kocuria rhizophila DC2201]
 gi|205816858|sp|B2GL48|MNMA_KOCRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183580753|dbj|BAG29224.1| putative tRNA uridine-sulfurtransferase [Kocuria rhizophila DC2201]
          Length = 383

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 138/385 (35%), Positives = 194/385 (50%), Gaps = 30/385 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78
           MRV+ AMSGGVDS+V AA     G++V GV L L +    + R G   CC  +D  DA R
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHEVTGVHLAL-SRTPGTLRTGARGCCTIEDSRDAWR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + + +YV+D+ ERF+  V+  F + YAAG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AAEKLGIPYYVWDFSERFQADVVDDFVAEYAAGRTPNPCMRCNEKIKFAALLEKALALGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY   ++  G DG   + + R  D  +DQSY L   T +QL    FPL +   K
Sbjct: 120 DAVCTGHYA--KVVEGPDG--HKELHRAADWAKDQSYVLGVLTAEQLEHAIFPLAETPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A E GL +A K DS DICF+  G     +          G IV   G  LG H 
Sbjct: 176 AQVRAEAEERGLSVATKPDSHDICFIPDGDTRGWLADHMDLD--PGRIVDTEGNELGEHR 233

Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   YT+GQRRGL +      G+P FV+ +   ++ V+VGP + L +  +     +W G 
Sbjct: 234 GAQAYTVGQRRGLHIGRPAPDGKPRFVLEIRPKTNEVVVGPEQLLAIDVMEGIRPSWAGL 293

Query: 314 GLFE--------DAVVDGFKCFVKIRSSQDPVPVF--VQRNDD--GVYVDFEKSEVGVAS 361
              E         A  + F+  V++R+  DP P    + R++    ++V  + ++ GVA 
Sbjct: 294 PPREVAALGADPKARSEEFEVTVQVRAHGDPAPARAWLTRSEGTPRLHVRLDTAQRGVAP 353

Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386
           GQ  V Y       RVLG   I  +
Sbjct: 354 GQTMVLYQG----TRVLGQATIDAA 374


>gi|257784715|ref|YP_003179932.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Atopobium parvulum DSM 20469]
 gi|257473222|gb|ACV51341.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Atopobium parvulum DSM 20469]
          Length = 361

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/369 (30%), Positives = 175/369 (47%), Gaps = 27/369 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V + MSGGVDS++ AALL   GY+V  + ++ ++      +   C    D+ DA RVC T
Sbjct: 5   VYLGMSGGVDSALSAALLLEAGYNVKAIYMRNWSKDLPGFK---CPWADDLADAERVCVT 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +   V+D E  ++  V+     +Y  G TP P V CN+TVKF          GA+ +A
Sbjct: 62  LGIDLDVWDCEAEYKATVVDYLLDAYEHGRTPNPDVMCNQTVKFGTFAERAFAEGANFVA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESVR 201
           TGHY ++           + + R  D  +DQ+YFL+           FP+G +  K  VR
Sbjct: 122 TGHYAQNVP-------GTKKLLRAADAHKDQTYFLWRVPGHLFERTLFPIGHIATKAEVR 174

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGII 260
            +  E GL I  K DS  ICF+        +  ++     +GD++    G+ILG H+G  
Sbjct: 175 SMCAERGLGIETKPDSDGICFIGPVGLRTFL--LDTFQKKQGDVIEWETGKILGTHDGAF 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLFE 317
            +T+GQR+GL +  G   +VV  D   + V V       +L   R+ L +++W+      
Sbjct: 233 LFTVGQRKGLNIGGGPARYVVATDTLKNVVYVTCDLNCPALWTRRMELSDMHWISGEPAA 292

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D      +  ++ R +   VPV     D+   + +F++    VA GQ+ V Y        
Sbjct: 293 DG-----RYVIRTRHTGALVPVTFTLTDNQCGFAEFDQPVKTVAPGQSAVLYDG----QE 343

Query: 377 VLGGGIISG 385
           V+GGGII  
Sbjct: 344 VVGGGIIEA 352


>gi|325281986|ref|YP_004254528.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
 gi|324313795|gb|ADY34348.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
          Length = 349

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 45/374 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV MSGGVDS V A LL+R GY+VIGVTL+L+     S               R  C
Sbjct: 2   KKVVVGMSGGVDSFVTALLLRRQGYEVIGVTLELWEKNDLSG-------------VRDSC 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N+     +  E FR  V+ PF  +Y +G TP PC  CNR VK+  L  V  +LG + 
Sbjct: 49  EKLNIPFLCREGHELFRQQVVDPFVKAYRSGLTPSPCCICNRRVKWILLQQVADELGVEY 108

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R       + + R  + + +D ++DQSYFL+   Q  L     PLG+  K+ V
Sbjct: 109 IATGHYVRIA-----EREGRFYIRKGIDPQKDQSYFLWGLPQALLRRALTPLGEYTKKQV 163

Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDIVHLNGQILGRHN 257
           ++ A   G + +A + +S  ICF++   Y D +K           G+I+   G++LG H 
Sbjct: 164 KEWAARNGYEQMARRRESMGICFLKNKDYRDFIKDYPIKDFRQESGEIIDDKGRVLGVHA 223

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI+NYT+GQ+RG+    G P++V  +D   + +IV P+  L    + + ++  +    F 
Sbjct: 224 GILNYTVGQKRGIPDRTGVPMYVREIDVERNSIIVAPKSGLYTSVLTVGQVEAV---YFG 280

Query: 318 DAVVDGFKCFVK---------IRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           D + DG +  ++         IR+         + + D + V   +    VA GQ   FY
Sbjct: 281 DLLADGVEIKIRGLGLNPRGNIRA--------ERLSPDRLKVVLSEPAWAVAPGQPVAFY 332

Query: 369 TSDSNEARVLGGGI 382
             D     +LGGGI
Sbjct: 333 HEDI----LLGGGI 342


>gi|242309155|ref|ZP_04808310.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239524196|gb|EEQ64062.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 349

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 189/372 (50%), Gaps = 36/372 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ MSGGVDSS  A LL++ GY V G+ L+L+N  +  +            + ++  
Sbjct: 2   KKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHNKDEKHQYYTQ--------NIQKCS 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + + + D  E F+ +V   F  SY  G TP PC  CN  VKF     + ++L  D 
Sbjct: 54  EYLKIPYQIVDERELFKKSVYDYFVESYKQGLTPNPCAMCNPNVKFHIAFKLAKELNCDF 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +         R  + + +D  +DQSYFLF   Q+ +  + FPLGD KKE +
Sbjct: 114 VATGHYAQIQ-------NGR--IAQAVDTHKDQSYFLFGLKQEWIDRIIFPLGDKKKEEI 164

Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           + +A +    +G  +    DSQ+ICFV+   Y D++++        GD++   G  +G H
Sbjct: 165 KPIALKELPWLG-TLETYKDSQEICFVENS-YIDILQKY-YNTDKTGDVLDSKGNKIGTH 221

Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
            G + YTIG+R+G  +     P +V+ ++   + +IVG +E L   ++    ++ L    
Sbjct: 222 KGYMQYTIGKRKGFTIKGALTPHYVLKINPKDNTIIVGDKEELATTQVQALNLS-LPQEW 280

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFYTSD 371
           FED       C VKIR     +P  +      N + +    +++  GVA+GQA V Y  +
Sbjct: 281 FEDK--RQIDCEVKIRYKSHKIPAKISLENKNNQNIITAHLKEAAYGVANGQALVLYEGN 338

Query: 372 SNEARVLGGGII 383
               +VLGGG I
Sbjct: 339 ----QVLGGGFI 346


>gi|304389966|ref|ZP_07371923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326859|gb|EFL94100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 409

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 127/398 (31%), Positives = 184/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL   SR  S+   S      + DA RV 
Sbjct: 8   KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  F  +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 68  DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127

Query: 141 LATGHYIR-------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +ATGHY R                 V +       + R   + +DQSY L     + L  
Sbjct: 128 VATGHYARLWRPGQAGLIPVGVPPTVTEGAFPDFALLRGSAIGKDQSYVLAGARAEALAR 187

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             FPLGD+  K + R  A  +G+ +A K DS DICF+  G     ++         G IV
Sbjct: 188 AVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFLRGCIGAAL--GQIV 245

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
             +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V  
Sbjct: 246 DEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTVTE 305

Query: 303 IYLR-EINWLGDG------LFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVYVDF 352
           I     +NWL D          +  +D     ++ R+   PV    V ++   DG  +  
Sbjct: 306 IQAGPAVNWLTDPTRLGLGATGEGKLDPVGLTIQFRAHGQPVTPQAVHLESGTDGTKLQV 365

Query: 353 EKS----EVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                    GVA GQ+ V Y       RV+    I+ +
Sbjct: 366 ALPPTAGVTGVAPGQSLVLYQDSPQGDRVIAQATITAT 403


>gi|159469071|ref|XP_001692691.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277944|gb|EDP03710.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 365

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 108/378 (28%), Positives = 162/378 (42%), Gaps = 28/378 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +RV V +SGGVDSS+   LL   G+DV    LQ++          +C   +D+  AR+
Sbjct: 3   KRLRVAVLLSGGVDSSLALRLLVAAGHDVTAFYLQIWFQEDFRNFWDACPWEEDLEYARK 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137
           VC+ + V   V     ++ + V+    +   AG TP P + CN  VKF        ++ G
Sbjct: 63  VCEALGVKLEVVPLTTQYWDRVVASSVAEIRAGRTPNPDIWCNSRVKFGAFYDHLAQRHG 122

Query: 138 A--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A  D +A+GHY R         +    +    D  +DQ+YFL   T  QL  + FPLG +
Sbjct: 123 AEFDRVASGHYARVAAAAA--VEEEVRLLLTPDAVKDQTYFLSGLTPDQLSRVMFPLGCL 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR LA    L   ++ DSQ ICF+ + ++ + VK           +    G+ LG 
Sbjct: 181 TKSQVRKLAAAADLANKNRKDSQGICFLGKVRFSEFVKEHLGEWHGP-LLEAETGRPLGT 239

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310
           H G   YT+GQR G+ +  G P +VV  D   + V+V             +       NW
Sbjct: 240 HAGYWFYTVGQRGGIKLPGG-PWYVVAKDTARNVVLVSRSYYDCEGGKARNAFTCGPFNW 298

Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQAC 365
           L   L         +    +R   +     ++ +D         V  E ++ G+A GQ  
Sbjct: 299 LHPRLRP-------RLGAGVRHGPNMYRCTLRLHDGSGAPLYGTVVLEANDQGLAPGQYA 351

Query: 366 VFYTSDSNEARVLGGGII 383
           VFY         LG  +I
Sbjct: 352 VFYQG----GTCLGSAVI 365


>gi|150002999|ref|YP_001297743.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
 gi|254883647|ref|ZP_05256357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 4_3_47FAA]
 gi|294775633|ref|ZP_06741142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|319642281|ref|ZP_07996940.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
 gi|205810256|sp|A6KXF7|MNMA1_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|149931423|gb|ABR38121.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus ATCC 8482]
 gi|254836440|gb|EET16749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 4_3_47FAA]
 gi|294450575|gb|EFG19066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|317386137|gb|EFV67057.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
          Length = 354

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 160/368 (43%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDS+VV  LL   GY      +++           +C A +D+       
Sbjct: 1   MNIAALISGGVDSAVVVHLLCEQGYKPDLFYIKI---GMDGDEDLTCTAEEDIELCTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  + D   ++ + V+         G TP P V CN+ +KF         L  D 
Sbjct: 58  RKYGLSLNIIDLHRQYWDNVVAYAIDKVKRGLTPNPDVMCNKLIKFGCFEQEAGHL-YDK 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY         +   +  +    D  +DQ+ FL      Q+  L FPLG + K  V
Sbjct: 117 TATGHYASIL-----EKDGKIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259
           RD+AR   L  A + DSQ ICF+ +  Y + ++R       EGDI+    G+ +G H G 
Sbjct: 172 RDIARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLGE--KEGDIIEMETGKRIGTHKGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FV+  D + + + V      +        L + +++ + L+
Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           + A         KIR +   +   + R D+   +       G+A GQ  V Y  D N   
Sbjct: 289 KGAPSA--DVSFKIRHTDTFMKGILTREDNLFRIHSHVPLQGIAPGQFGVLY--DKNAEI 344

Query: 377 VLGGGIIS 384
            +G G I+
Sbjct: 345 CVGSGEIT 352


>gi|288928497|ref|ZP_06422344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331331|gb|EFC69915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 353

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 156/371 (42%), Gaps = 25/371 (6%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  ++ V +SGGVDSSVV     R G       +++         +  C + +D+  A  
Sbjct: 2   QGKKIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKI---GPEETEEWDCASEEDLEMATA 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + +   V         AG TP P V CNR +KF       R    
Sbjct: 59  VAKRFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFHEK-RGHEY 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     ++ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 118 DLIATGHYAQTEWIDG-----KKWLVTSPDPVKDQTDFLAQIYDWQLRKALFPIGHYQKG 172

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+ +  Y + ++R        G+++ L   + +G H 
Sbjct: 173 EVREIAEREHLINAKRKDSQGICFLGKINYNEYIRRFLGE--KPGEVLELETEKKIGMHR 230

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR GLG   G P + V  D   + + V               +  ++     
Sbjct: 231 GLWFHTIGQRHGLGFGGG-PWYAVKKDVERNVLFVSKGYEPATAYKKDFKVHHLH----- 284

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373
               A +DG     KIR + +     ++   DG Y V  E+   GVA GQ CV Y  +  
Sbjct: 285 -QLTAPLDGLDVTFKIRHTPEYHRAQLEPLPDGGYIVHAEEPMQGVAPGQFCVIYDKE-- 341

Query: 374 EARVLGGGIIS 384
             R  G   I+
Sbjct: 342 HHRCFGSAEIA 352


>gi|170036350|ref|XP_001846027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
 gi|167878999|gb|EDS42382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
          Length = 358

 Score =  339 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 23/354 (6%)

Query: 43  DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
            G+DV    ++ ++        G C   QD  DA+++C  +++     ++ + +   V  
Sbjct: 7   RGFDVRAAFMKNWD---LIDENGYCSGEQDWLDAQKLCRQLDIPLEQVNFVKDYWLEVFG 63

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDD---GK 158
            F   Y+AG TP P + CNR +KF+      R+ +GAD +ATGHY RS      +    +
Sbjct: 64  SFLKDYSAGITPNPDILCNRHIKFNLFYKHARERMGADAIATGHYCRSSFGPFLENYTEQ 123

Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDS 217
            R  +   +D  +DQ++FL     + L    FP+G M K  V+ LA E+GL+  A K +S
Sbjct: 124 DRVRLLTGVDEIKDQTFFLSQIGTEALRRTMFPIGGMMKREVKALAAEVGLEAFAKKKES 183

Query: 218 QDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGE 276
             ICFV +  + D +       +  G  V    G+++G H G+ ++T+GQ+  +G  + +
Sbjct: 184 MGICFVGKRSFQDFIGEYIE--SKPGGFVDFETGRVVGEHKGLHHWTVGQKAKIGGCL-K 240

Query: 277 PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRS 332
           P FV   D   + + +        L    ++  +  WL     +D V  G  +C  + + 
Sbjct: 241 PYFVFRKDVERNVIYLVAGTDHPLLRTDMVFAEDPVWLN--RPDDWVRGGVLRCQFRFQH 298

Query: 333 SQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           ++  V    ++ +   V+V  ++    +  GQ  VFY ++       G   I+ 
Sbjct: 299 TKPLVGCSVIETDGHKVFVKLDEPLRAITPGQYAVFYRNE----ECFGSARITK 348


>gi|298346268|ref|YP_003718955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236329|gb|ADI67461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii ATCC 43063]
          Length = 409

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 128/398 (32%), Positives = 186/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL   SR  S+   S      + DA RV 
Sbjct: 8   KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  F  +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 68  DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127

Query: 141 LATGHYIR-------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +ATGHY R                 V +       + R   + +DQSY L     + L  
Sbjct: 128 VATGHYARLWRPGQVGLIPVGVPPTVAEGAFPDFALLRGSAIGKDQSYVLAGARAEALAR 187

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             FPLGD+  K + R  A  +G+ +A K DS DICF+  G     ++         G IV
Sbjct: 188 AVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFLRGCIGAAL--GQIV 245

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
             +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V  
Sbjct: 246 DEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTVTE 305

Query: 303 IYLR-EINWLGDG------LFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVYVDF 352
           I     +NWL D          +  +D     ++ R+   PV    V ++ + DG  +  
Sbjct: 306 IQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPQAVHLESSTDGTKLQV 365

Query: 353 E----KSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                    GVA GQ+ V Y   S   RV+    I+ +
Sbjct: 366 ALSPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 403


>gi|291276778|ref|YP_003516550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter mustelae 12198]
 gi|290963972|emb|CBG39811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter mustelae 12198]
          Length = 342

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 176/369 (47%), Gaps = 34/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V + MSGGVDSS  A LLK+ GY+V G  L+L++  +  +     C         +V 
Sbjct: 1   MKVALLMSGGVDSSYSAYLLKKQGYEVKGFYLKLHDKEEKHQVFLKNCH--------KVA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V + +E FR  V   F ++Y  GETP PC  CN  +KF   L +  Q G + 
Sbjct: 53  QNLQIDFQVIEAKEEFRQKVYNEFVNAYQRGETPNPCALCNPLMKFGLALDIALQQGCER 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R     G        +    D  +DQSYFL+A +Q  +  L FPLGDM KE V
Sbjct: 113 IATGHYARIGHVDG-----VTRIREAKDKTKDQSYFLYAISQDAINRLIFPLGDMLKEEV 167

Query: 201 RDLAREM-----GLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           +  A         L+     +SQ+ICFV+   Y D++K+    +  EG +  + G  +G 
Sbjct: 168 KPQAFAAMPWLGNLET--YKESQEICFVE-TDYIDILKKHV-NVEQEGIVRDVEGNAIGT 223

Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           H G + YTIG+R+G  V    +P FV+ +    + ++VG +E L    I  +        
Sbjct: 224 HKGYMQYTIGKRKGFSVRGAHDPHFVLKIHPEKNEIVVGKKEELATSLIEAQN------- 276

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                     K  VKIR    P    +   D  +  +F +   G A GQA V Y  D   
Sbjct: 277 KSLPQNFKAGKYLVKIRYRSAPSEAALDLQDGRIIANFTEPVYGSAKGQALVVYVED--- 333

Query: 375 ARVLGGGII 383
            +VLGGG+I
Sbjct: 334 -KVLGGGVI 341


>gi|229819858|ref|YP_002881384.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Beutenbergia cavernae DSM 12333]
 gi|259495825|sp|C5C2D6|MNMA_BEUC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229565771|gb|ACQ79622.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 193/380 (50%), Gaps = 26/380 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G+DV+GV + L  +R   +     CC+ +D  DARR 
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHDVVGVHMALSRTRAQHRTGSRGCCSIEDASDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  E F + V+  F S YAAG TP PCV CN  +KFS LL     LG D
Sbjct: 61  ADVLGIPFYVWDLSEEFTDTVVADFLSEYAAGRTPNPCVRCNEHIKFSALLDRGLALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198
            +ATGHY R              + R  D  +DQSY L     ++L    FPLG++  K+
Sbjct: 121 AVATGHYARIERGAA----GVPELHRAADAAKDQSYVLAVMGPERLARSLFPLGEVPTKD 176

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +VR  A   GL ++ K DS DICFV  G     ++      +  G ++  +G+ +G H+G
Sbjct: 177 AVRAEAAARGLSVSAKPDSYDICFVADGDTQGFLRSHLG--SQPGPVLDTDGREVGAHDG 234

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQR+GL +    A G P +VV +   S+ V+VGP E L V  +      WL   
Sbjct: 235 AYAFTVGQRKGLRLPRPAADGRPRYVVDVRTASNTVVVGPAELLSVRDVLGERPVWLA-- 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDG---VYVDFEKSEVGVASGQACVFYT 369
              +   +     V++R+    +P  ++   +DDG   +     +   G+A+GQ+ V Y 
Sbjct: 293 ---EEPHEWTDATVQVRAHGAALPARIRTVTDDDGASHLAARLAEPLRGLAAGQSVVAYD 349

Query: 370 SDSNEARVLGGGIISGSKRS 389
                 RVLG   ++ + R 
Sbjct: 350 G----TRVLGQATVAATGRD 365


>gi|315657217|ref|ZP_07910101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492320|gb|EFU81927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 409

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 129/398 (32%), Positives = 186/398 (46%), Gaps = 35/398 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
           +++V +SGGVDS+V  A L+  G++V G  +QL   SR  S+   S      + DA RV 
Sbjct: 8   KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V   V+D  ERF   V+  FA +Y  G TP PCV CNR +KF  ++   R+ G D 
Sbjct: 68  DFLGVELQVWDLAERFNRVVMDSFAQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127

Query: 141 LATGHYIR-------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +ATGHY R                 V +       + R   + +DQSY L     + L  
Sbjct: 128 VATGHYARLWRPGQVGLIPVGVPPTVAEGAFPDFALLRGSAIGKDQSYVLAGARAEALAR 187

Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
             FPLGD+  K + R  A  +G+ +A K DS DICF+  G     ++         G IV
Sbjct: 188 AVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFLRGCIGAAL--GQIV 245

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHR 302
             +G ++G H+G   YT+GQRRGL +      G P +VV  D  ++ V V PR++L V  
Sbjct: 246 DEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTVTE 305

Query: 303 IYLR-EINWLGDG------LFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVYVDF 352
           I     +NWL D          +  +D     ++ R+   PV    V ++   DG  +  
Sbjct: 306 IQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPRAVHLESGTDGTKLQV 365

Query: 353 EKS----EVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                    GVA GQ+ V Y   S   RV+    I+ +
Sbjct: 366 ALPPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 403


>gi|257459254|ref|ZP_05624371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter gracilis RM3268]
 gi|257443353|gb|EEV18479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter gracilis RM3268]
          Length = 343

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 29/368 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++++AMSGGVDSS+ A LL+  G++V G  ++L+                ++   R+V 
Sbjct: 1   MKILIAMSGGVDSSMCAKLLQDAGHEVQGCYMKLHAKP--------GYHEANIAKVRKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D ++ F   V  PF  +Y  G TP PC  CNR +K   LL   R+ G + 
Sbjct: 53  EFLGIKIHILDLQDDFNRDVYEPFVQAYIGGLTPNPCALCNRRIKLGKLLEFAREQGFER 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+R      +DG    ++    DL +DQSYFL       L  + FPLG M K+ V
Sbjct: 113 LATGHYVRI-----EDG----LLKAAADLSKDQSYFLANIDPAALEFMLFPLGGMYKKDV 163

Query: 201 RDLAREM--GLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++ AR       IA  S+S +ICFV    Y DV+ R   G  + G +    G  +G H G
Sbjct: 164 KEAARAYAELSQIASASESSEICFV-DTTYIDVLNRHT-GTKMPGIVRDRAGNAIGTHEG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ +D + + ++VG +E L  +       N   + L  
Sbjct: 222 YMHYTIGKRRGFTVHGAHEPHFVLSIDPHKNEIVVGGKEELATYEFDTENFN---NFLSR 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           D +++     VKIR     +PV +   +D GV+        G+A  Q  VFY       R
Sbjct: 279 DEILNMPGLGVKIRYRSAKLPVKISPREDGGVHAVLSAPAAGIAPAQLAVFYD---ERDR 335

Query: 377 VLGGGIIS 384
           V+  G I 
Sbjct: 336 VVASGFIK 343


>gi|237722379|ref|ZP_04552860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|299146396|ref|ZP_07039464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|229448189|gb|EEO53980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|298516887|gb|EFI40768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 355

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 162/368 (44%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H G 
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAIIELETGKKLGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + D     + +  +   ++   +   G+A GQ  V Y  ++   
Sbjct: 289 KGQEKE-IDITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEETK-- 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|293369466|ref|ZP_06616049.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|292635464|gb|EFF53973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 355

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 161/368 (43%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H G 
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAIIELETGKKLGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + D     + +  +   ++   +   G+A GQ  V Y  D    
Sbjct: 289 KGQEKE-IDITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIY--DEEAK 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|298483766|ref|ZP_07001939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|295087550|emb|CBK69073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
 gi|298270060|gb|EFI11648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 355

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 102/368 (27%), Positives = 160/368 (43%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MEIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTLQCDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ +G H G 
Sbjct: 172 REIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGE--KEGAIVELETGKKVGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + +     + +  +   ++   +   G+A GQ  V Y  +    
Sbjct: 289 KGQEKE-VDITFKIRHTPEFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEEVK-- 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|307564524|ref|ZP_07627065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella amnii CRIS 21A-A]
 gi|307346884|gb|EFN92180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella amnii CRIS 21A-A]
          Length = 387

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/394 (26%), Positives = 160/394 (40%), Gaps = 42/394 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  ++ V +SGGVDSSVV   L R G       +++         +  C + +D+  A  
Sbjct: 7   KHKKIAVLLSGGVDSSVVVWELARIGLHPDCYYIKI---GPKEADQWDCTSEEDLEMATA 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V D  + +   V          G TP P V CNR +KF       +    
Sbjct: 64  VAKRFGCKLEVVDCHKEYWGEVTKYTMDKVRVGLTPNPDVMCNRLIKFGAFYKK-KGHEY 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY +++   G     ++ +C   D  +DQ+ FL      QL    FP+G   K+
Sbjct: 123 DLIATGHYAQTKWIDG-----KKWLCTSPDAVKDQTDFLSQIYPWQLQKAIFPIGHYAKD 177

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VR +A    L  A + DSQ ICF+    Y + V+R       +GDI+    G+ +G H 
Sbjct: 178 EVRRIAEREHLINAARKDSQGICFLGNIDYNEYVRRYLGES--KGDIIEKETGKKIGEHK 235

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG+  G P FVV  D   + + V               +  ++WL   
Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVVSKDVERNVLYVSHGYDPELAYKRSFKVLGLHWLTPE 294

Query: 315 LFE----------------DAVVDGFKCFVKIRSSQDPVPVFVQR--------NDDGVYV 350
             E                ++         KIR + +    F++               +
Sbjct: 295 GLELFEGKDGVGLQEDLSIESHTRLIPITFKIRHTPEYHKGFLEVGSTKEALAEGGSGVI 354

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
             ++   GVA GQ CV Y  D    R  G G I+
Sbjct: 355 HSQQKIHGVAPGQFCVIY--DEQHDRCYGSGEIT 386


>gi|307103568|gb|EFN51827.1| hypothetical protein CHLNCDRAFT_139672 [Chlorella variabilis]
          Length = 417

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 167/388 (43%), Gaps = 28/388 (7%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L  +     + V + +SGGVDSS+   LL   G+ V    LQ++         G+C   +
Sbjct: 44  LGCEPGAAPLTVALLLSGGVDSSLALHLLVAAGHRVTAFYLQIWFQEDFRNFWGACPWEE 103

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+   R VC+ + V   V    E++ + V+    +    G TP P V CN  VKF     
Sbjct: 104 DLEYCRAVCERLGVELQVVPLTEQYWDRVVAHCITEIRHGRTPNPDVLCNSRVKFGAFYE 163

Query: 132 V--TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               + +G  D +A+GHY R          R  +     D  +DQ+YFL   +Q QL   
Sbjct: 164 HLSAQAIGTFDRIASGHYARLERPGTAAAARLAL---TPDAIKDQTYFLAHLSQHQLARA 220

Query: 189 RFPLGDMKKES-----VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            FPLG + K       VR LA    L    + DSQ ICF+ + K+ + +++        G
Sbjct: 221 LFPLGHLTKPQARGSSVRALAAAADLPNKARKDSQGICFLGKVKFNEFIRKHLGE--WPG 278

Query: 244 DIVHLN-GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLE 299
            IV     +++G H+G   +T+GQR+G+ ++ G P +V     +++ V V          
Sbjct: 279 PIVEEESNEVVGFHHGFWFHTVGQRKGIALSGG-PWYVTRKHPDTNVVYVSRQYHESDKL 337

Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRNDDGVYVDFEKSEV 357
            +       +W G    + + +     + K+R         + ++      +V    ++ 
Sbjct: 338 RNSFSCHSFSWCGVARPDPSRL----LYCKVRHGPHMYACQLSLEPGGGAGHVVLGGNDQ 393

Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385
           G+A+GQ  VFY         LG  +I+G
Sbjct: 394 GLAAGQYAVFYQD----GACLGSAVIAG 417


>gi|281423882|ref|ZP_06254795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris F0302]
 gi|281401970|gb|EFB32801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oris F0302]
          Length = 366

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 164/372 (44%), Gaps = 20/372 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ + +SGGVDSSVV   +   G       + +       K +  C + +D+  A  
Sbjct: 8   KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMI---GPEEKEEWDCTSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + +       V D  + + + V         AG TP P V CNR +KF            
Sbjct: 65  LTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFDEKI-GHDY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G  +K 
Sbjct: 124 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYGWQLRKTIFPIGHFEKN 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR++A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +G H 
Sbjct: 179 EVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESV--GDVIELETGKKIGEHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG + G P FVV  D   + + V               + + +     
Sbjct: 237 GLWFHTIGQRKGLGFSGG-PWFVVKKDVERNILYVSHGYDPETAYKLDFKIHDFHATTYC 295

Query: 315 LFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDS 372
               A+ +   +   KIR + + +P  ++R  +  YV   +    GVA GQ CV Y  D+
Sbjct: 296 PEGTALPELPERITFKIRHTPEYLPATLERIGEKTYVIHADNKIHGVAPGQFCVVY--DA 353

Query: 373 NEARVLGGGIIS 384
           +     G G I+
Sbjct: 354 HHHYCYGSGEIT 365


>gi|299470175|emb|CBN78203.1| tRNA-methyltransferase [Ectocarpus siliculosus]
          Length = 478

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 103/423 (24%), Positives = 159/423 (37%), Gaps = 74/423 (17%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDSSV   LL   GY +    L+++           C   +D+  A  VC+   V
Sbjct: 2   LLSGGVDSSVAMRLLLDQGYKIRAFYLKIWL-EDELAHLNECPWEEDLAYATAVCEQAGV 60

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
              V   +  + + V+         G TP P V CN  +KF        +     +ATGH
Sbjct: 61  PLEVVPLQREYWDQVVSYTVREAREGRTPNPDVMCNSRIKFGMFYDHVGKH-FRHVATGH 119

Query: 146 YIRSRLYVGDD-------------------------------GKRRRIMCRPMDLERDQS 174
           Y R     G D                                + R  +    D  +DQ+
Sbjct: 120 YARLEHSGGSDDANATPSDRSAAAAAAAAGTEEPPVRVAAGSDRGRVRLLLSPDAVKDQT 179

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           YFL A TQ QL    FPLG   K+ +R+LA    L    + DSQ ICF+ + K+ + ++ 
Sbjct: 180 YFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQGICFLGKLKFDEFLQH 239

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSS 288
                   G IV   G+ +G H G+  +TIGQR+G+G  +        P +V   D   +
Sbjct: 240 YLGTS--PGAIVDQTGRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVADKDMERN 297

Query: 289 RVIVG-PRESLEVHR--IYLREINWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQR- 343
            ++V   RE++   R    +  + W+      +   D   +  VK R         ++  
Sbjct: 298 VLVVTNDREAIASPREVFRVEALQWISGRPPAELARDRSMRLRVKTRHGPQMRDCLLRLV 357

Query: 344 ------------------NDDGV------YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                              +D V      YV+ +  +  +A GQ   FY         +G
Sbjct: 358 PEVAPGDSGGRAGGAEATVEDRVGSPTRGYVNLDSKDSALAPGQFAAFYLG----GECVG 413

Query: 380 GGI 382
            G+
Sbjct: 414 SGV 416


>gi|157165469|ref|YP_001467209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter concisus 13826]
 gi|205811585|sp|A7ZEK1|MNMA_CAMC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112799930|gb|EAT97274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter concisus 13826]
          Length = 340

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 190/369 (51%), Gaps = 35/369 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VAMSGGVDS++ A  L+  G++V G  + L+               +++   ++V 
Sbjct: 1   MKIMVAMSGGVDSTMTAKFLQEAGHEVQGCYMMLHQKP--------GYHEENIRKVKKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D +++F   V  PF   Y  G+TP PC  CN+ +K   LL   +  G + 
Sbjct: 53  EYLGIKVHILDLQDKFNEYVYDPFVRLYKEGKTPNPCALCNKFIKLGALLDFAKVNGCEK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY++       DG     +    D  +DQSYFL    ++ L D+ FPLGD  K+ +
Sbjct: 113 LATGHYVQVV-----DG----FITCAKDPSKDQSYFLAQVPKEVLKDVIFPLGDKFKKDI 163

Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           ++LAR  ++  + A +++S +ICFV+      + K  N  +   G++V  +G I+GRH G
Sbjct: 164 KELARGVKVLEEFATQAESSEICFVENTYIEVLNKHYNTNL--PGNVVDKDGNIIGRHQG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            ++YTIG+RRG  V    EP FV+ ++   + ++VG ++ L    + L  +N   D    
Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVIKINAEKNEIVVGTKDDLAQKVVELENVNLFIDE--- 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSDSNEA 375
               D F+C  KIR     +  FV+ +       +   ++ +GVA GQ CV Y  D    
Sbjct: 279 ----DKFECETKIRYRSPKLEAFVEVDKSSKTAKLTLNQNALGVAQGQLCVMYDGD---- 330

Query: 376 RVLGGGIIS 384
           RV+  G I 
Sbjct: 331 RVIASGFIK 339


>gi|289644236|ref|ZP_06476325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia symbiont of Datisca glomerata]
 gi|289505959|gb|EFD26969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia symbiont of Datisca glomerata]
          Length = 351

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 182/367 (49%), Gaps = 29/367 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S  + +     CC  +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSKSPDSHRTGARGCCTVEDARDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  +RF + VI  F ++Y AG TP PCV CN  +KF+ +L     LG D
Sbjct: 61  ADVLGIPFYVWDLADRFEHDVIDEFVAAYEAGRTPNPCVRCNERIKFAAVLERALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ +    V         + R +D  +DQSY L      QL    FPLGD  K  
Sbjct: 121 AVVTGHHAQLSGAV---------LRRSVDPGKDQSYVLGTLRPDQLAHAIFPLGDTTKTE 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR  A   GL +ADK DS DICF+  G     ++         G +V    G+ L  H+G
Sbjct: 172 VRAEAARRGLAVADKPDSHDICFIADGDTGRWLRDRLG--TQPGPVVDAATGETLAEHDG 229

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +TIGQRRGL +      G P +V+ +   +  V VGP E+L+V  +      W    
Sbjct: 230 AFAFTIGQRRGLRLGRPAPDGRPRYVLDISPVTRTVTVGPAEALDVSHLVADRAVW---- 285

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
            +E  VV    C  ++R+    VP   +   D + V  ++   G A GQA V Y  D   
Sbjct: 286 PYEGPVV----CAAQVRAHGRAVPAIAEGVGDELRVTLDEPLRGTAPGQAVVLYDGD--- 338

Query: 375 ARVLGGG 381
            RVLGGG
Sbjct: 339 -RVLGGG 344


>gi|222624284|gb|EEE58416.1| hypothetical protein OsJ_09614 [Oryza sativa Japonica Group]
          Length = 410

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 156/326 (47%), Gaps = 7/326 (2%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +RV V +SGGVDSSV   LL   G+      L+++           C    D+  A+ V
Sbjct: 77  PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 136

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD I+V   V    + + N V+    + Y +G TP P V CN  +KF   L     LG D
Sbjct: 137 CDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+GHY        DD +   ++    D  +DQ+YFL   +Q QL  L FPLG + K+ 
Sbjct: 197 YIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDE 256

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR LA +M L   D+ DSQ ICF+ + K+ + V+R      +EG ++    G  LG H G
Sbjct: 257 VRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGE--MEGVLLEAETGDYLGTHRG 314

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315
              YTIGQR+GL +  G P +VV     ++ V V     SL+  R    +  +NW  +  
Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNSG 373

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV 341
             +      K F ++  SQ   P  +
Sbjct: 374 PTNNEQLKCKLFFELIGSQQSTPAVI 399


>gi|160883313|ref|ZP_02064316.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483]
 gi|156111297|gb|EDO13042.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483]
          Length = 355

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    DL +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDLVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H G 
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAIIELETGKKLGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + D     + +  +   Y+   +   G+A GQ  V Y  D    
Sbjct: 289 KGQEKE-IDITFKIRHTPDFTKGKLIQEGEKQFYILSSEKLQGIAPGQFGVIY--DEEAK 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|308809381|ref|XP_003082000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
           [Ostreococcus tauri]
 gi|116060467|emb|CAL55803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
           [Ostreococcus tauri]
          Length = 467

 Score =  337 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 171/380 (45%), Gaps = 23/380 (6%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            ++ K +RV V +SGGVDSSV  ALL+  G++     LQ++           C   +D+ 
Sbjct: 78  PESTKPLRVAVLLSGGVDSSVALALLRAAGHECRAFYLQIWFQEDFRNTWEECPWEEDLR 137

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LS 131
            A  VC  + V        + + N V+         G TP P V CN  VKF      L+
Sbjct: 138 VAEGVCARVGVELETVPLTDAYWNLVVSDSVEEIRRGRTPNPDVLCNSRVKFGAFREWLA 197

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                  D +A+GHY        D       +    D  +DQ+YFL   TQ+QL  + FP
Sbjct: 198 KAHPGEFDRVASGHYAAVER---DAVTGEASLVMSGDAFKDQTYFLANLTQEQLRAVSFP 254

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250
           +G M K  +R LA    L  A + DSQ ICF+ + K+ + +        + GDI+ +  G
Sbjct: 255 VGGMPKADIRSLATSAELPNAGRKDSQGICFLGKVKFSEFIAEHLGE--MPGDIIEVETG 312

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG-PRESLEVHR--IYLRE 307
           ++LG+H     +TIGQR GL +  G P +V   D  ++ V V     SL+  R    +  
Sbjct: 313 KVLGKHRAYWFHTIGQRSGLFL-HGGPWYVAGKDCVNNVVYVTRDYYSLDKSRDTFNVAG 371

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGV-YVDFEKSEVGVASGQ 363
            NW+     +   ++G +  VK+R  ++       F + + +    V   + + G+A GQ
Sbjct: 372 FNWISGKEPDLENIEGLR--VKVRHGENIYSCSFKFKEIDGERCGEVTINQDDQGLAPGQ 429

Query: 364 ACVFYTSDSNEARVLGGGII 383
             VFY       + LG G I
Sbjct: 430 YAVFYDG----PKCLGCGKI 445


>gi|258648071|ref|ZP_05735540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella tannerae ATCC 51259]
 gi|260851930|gb|EEX71799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella tannerae ATCC 51259]
          Length = 364

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 19/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+    +SGGVDS+V   LLK  G       +++       + +  C A +D   A  V 
Sbjct: 4   MKTAALISGGVDSAVAVHLLKEQGITPDLFYIKI---GNGPQGEWDCKAEEDWEMATAVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   + D ++ + + V+         G TP   V CN+ +KF            D 
Sbjct: 61  RRYGCKLKLIDLQKEYWDEVVGYIVDRLRKGLTPNSDVMCNKYIKFGCFEER-EGHNYDR 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY ++      D   R  +    D  +DQ+ FL       +  L FP+G + K+ V
Sbjct: 120 IATGHYAQTET----DEAGRVWLTTAPDPIKDQTDFLAQLDGFSVRKLIFPIGGLMKDEV 175

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGI 259
           R +A+   L  A + DSQ ICF+ +  + ++ ++       EG +V    G I+G+H G 
Sbjct: 176 RKIAQAAHLAPAKRKDSQGICFLGKISFSELARKYLGE--KEGLVVEQETGNIIGKHKGY 233

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316
             YTIGQR+GLG   G P +VV  D   + + V      ++       +   +++    +
Sbjct: 234 WFYTIGQRKGLGFGGG-PWYVVRKDIKRNIIYVSRGFETKAAYGKAFRIEMPHFITYNPY 292

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           E      ++   K+R + +  P  +        +  ++   G+A GQ  V Y  D    R
Sbjct: 293 E--ADGDYRVTFKVRHTPEFTPGRLLVRGGKYELHSDELIQGIAPGQFAVLY--DEQAHR 348

Query: 377 VLGGGII 383
            LG G I
Sbjct: 349 CLGSGEI 355


>gi|237736558|ref|ZP_04567039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420420|gb|EEO35467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 352

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 180/364 (49%), Gaps = 23/364 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ MSGGVDSS+   LL++ GY+VIGVTL  +   ++ K +        +  A++V 
Sbjct: 4   KKVVLGMSGGVDSSISVYLLQKQGYEVIGVTL-NHKKEESLKEE--------IDSAKKVA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +  N+ H V D E+ F+  V+  F   Y+ G TP PCV C+  VK   L  +  +  A  
Sbjct: 55  NFFNIKHRVIDIEDIFQKEVVNNFLDGYSKGITPSPCVICDERVKMKILFDIADEEKAYY 114

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY  +      D   + ++ +  D ++DQSY L+     ++  L FPL    K  +
Sbjct: 115 VATGHYCSTEYNEEFD---KILLKKAKDSKKDQSYMLYRLDSDKISRLLFPLFKYTKNEI 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R++   +GL++ +K DSQ ICF + G Y D +KR        G  +  +G I+G H G  
Sbjct: 172 REIGENIGLEVHNKKDSQGICFAKIG-YIDFLKRNLGDSIKRGKFIDRDGNIMGEHEGYQ 230

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YTIGQRRGL + +    F+  ++   + + +G  + L   R+ L +         E   
Sbjct: 231 LYTIGQRRGLNLKLPRAYFITAINPEKNEITLGEYKELARKRVELVDF----KSPIELEK 286

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-FEKSEVGVASGQACVFYTSDSNEARVLG 379
           +   K   + R S       V   ++ +Y + FE++    A GQ  V Y  D     VLG
Sbjct: 287 IIEKKVIGRPRFSSFGAEGKVIVENEKIYFEYFEENVQ-NAPGQHLVIYYKDF----VLG 341

Query: 380 GGII 383
           GG+I
Sbjct: 342 GGMI 345


>gi|145356777|ref|XP_001422602.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582845|gb|ABP00919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 166/370 (44%), Gaps = 19/370 (5%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGGVDS+V A  L+R G       ++ +++R        C    D+  AR + + +
Sbjct: 17  VVGLSGGVDSAVAAWALERCGARATATLMRNWDARDEDAAT-DCSHRDDLKSARAIAEKL 75

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLA 142
           N+     D+   + + V  P+  ++ +G TP P ++CNR VKF  LL    + LG   LA
Sbjct: 76  NLRFIESDFTREYWHEVFEPYVEAFESGATPNPDLECNRRVKFGALLRRAMEDLGGRYLA 135

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY R    V  D      + R +D  +DQSYFL +   + L    FPLG + K   R+
Sbjct: 136 TGHYARIDRDV--DEGAPPRLLRGIDQTKDQSYFLASVRGEALRSACFPLGAVFKSETRE 193

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI----LGRHNG 258
            AR +G D AD+  S  ICF+ +  + + +         EG  V             H G
Sbjct: 194 AARILGFDCADRRSSAGICFIGRRPFGEFIGEYI--TPSEGAFVDAETARPVPGAAPHRG 251

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD-G 314
           + +YT+GQR  +G A  +P FVV  +  ++ V V      ++L   R  L +  W+ +  
Sbjct: 252 LASYTVGQRAKIGGA-PKPWFVVGKNVAANVVYVAKGAEHDALYSTRAALADEFWISNRR 310

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              D      +   K R +        +     +   F++ E  V  GQA V Y  D   
Sbjct: 311 PTSDDGSSSVRLLAKTRYASFSSSFVPRVESSPLRATFDRPERAVTPGQALVLYDGDV-- 368

Query: 375 ARVLGGGIIS 384
              LGGG+I 
Sbjct: 369 --CLGGGVIE 376


>gi|237715861|ref|ZP_04546342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|262407475|ref|ZP_06084023.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294646866|ref|ZP_06724487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294808901|ref|ZP_06767630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229443508|gb|EEO49299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|262354283|gb|EEZ03375.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|292637811|gb|EFF56208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294443943|gb|EFG12681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 355

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 102/368 (27%), Positives = 161/368 (43%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MEIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTLQRDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLIFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A   GL  A + DSQ ICF+ +  Y D V+R       EG IV L  G+ +G H G 
Sbjct: 172 REIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGE--KEGAIVELETGKKVGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + +     + +  + + ++   +   G+A GQ  V Y  +    
Sbjct: 289 KGQEKE-VDIIFKIRHTPEFTKGKLIQEGEKLFHILSSEKLQGIAPGQFGVIYDEEVK-- 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|323344915|ref|ZP_08085139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oralis ATCC 33269]
 gi|323094185|gb|EFZ36762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella oralis ATCC 33269]
          Length = 359

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 168/381 (44%), Gaps = 29/381 (7%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           LN+ +L    K  ++ V +SGGVDSSVV   L R G       +++       + +  C 
Sbjct: 2   LNAEEL----KGKKIAVLLSGGVDSSVVVYELVRLGLLPDCFYIKI---GPEEQEQWDCS 54

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + +D+  A  V         + D  + + + V         AG TP P V CNR +KF  
Sbjct: 55  SEEDLEMATVVAARYGCRLEIVDCHKEYWSEVTRYTMDKVRAGFTPNPDVMCNRLIKFGA 114

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                     D++ATGHY ++ +  G     ++ +    D  +DQ+ FL      QL   
Sbjct: 115 FDDKV-GHRYDLIATGHYAQTEMIGG-----KKWLVTSPDPVKDQTDFLAQIYNWQLRKA 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+G   K+ VR++A    L  A + DSQ ICF+ +  Y D ++R        GD++ L
Sbjct: 169 LFPIGHYMKDEVREIAEHEHLINAKRKDSQGICFLGKINYNDYIRRFLGE--NPGDVIEL 226

Query: 249 -NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIY 304
             G+ +G H G+  +TIGQR GLG   G P + +  D   + + V      +        
Sbjct: 227 ETGRKIGMHRGLWFHTIGQRHGLGFGGG-PWYAIKKDVAQNVLYVSKGYEPQTAFQQDFK 285

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363
           + + ++L +       VD      KIR + +     +++  +G Y V   +   GVA GQ
Sbjct: 286 VHDFHFLTE------PVDMKHVTFKIRHTPEYHSALLEKTAEGAYTVHSTEQIQGVAPGQ 339

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
            CV Y  D    R  G G I+
Sbjct: 340 FCVVY--DEQHHRCFGSGEIT 358


>gi|118474553|ref|YP_892616.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886048|ref|ZP_06010087.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|205811604|sp|A0RQY3|MNMA_CAMFF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118413779|gb|ABK82199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 338

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 186/366 (50%), Gaps = 32/366 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V+VA+SGGVDSS+ A  L   GY V+G  ++L++              +++   ++V 
Sbjct: 1   MKVLVALSGGVDSSMSAKYLLEAGYSVVGCYMKLHSKP--------GYHEENIRKVKKVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D EE F   V  PF ++Y  G TP PC  CN+ +KF  L    + LG D 
Sbjct: 53  EFLGIETHILDLEEEFNAKVYEPFVNAYKEGLTPNPCAHCNKNIKFGALWKFAQTLGCDK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R      +DG    ++    DL +DQSYFL   + + L  + FPLGD  K  +
Sbjct: 113 MATGHYARI-----EDG----LIKVASDLSKDQSYFLANISPEILPYIIFPLGDKFKVDI 163

Query: 201 R--DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +          ++A + +S +ICFV+   Y D++ + +    + G +  ++G+++G+H+G
Sbjct: 164 KAAAAQIPQIAELASQKESSEICFVETT-YIDILNK-HFNTLMPGVVRDVSGKVVGKHDG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            + YTIG+R+G  V     P +V+ +D   + ++VG ++ L                   
Sbjct: 222 YMRYTIGKRKGFSVDGAHSPHYVLKIDAAKNEIVVGLKDELSSFSFT-------TTNFNN 274

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
               +  +CFVKIR    P+P  V + DDG  V  + +  GVASGQ  VFY       RV
Sbjct: 275 FTDKNELECFVKIRYRSTPIPCLVSKLDDGATVKLKDNAGGVASGQLAVFYD---EFDRV 331

Query: 378 LGGGII 383
           L  G I
Sbjct: 332 LASGFI 337


>gi|260171069|ref|ZP_05757481.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
 gi|315919389|ref|ZP_07915629.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693264|gb|EFS30099.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 355

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 160/368 (43%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D  + +   V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K+ V
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A + GL  A + DSQ ICF+ +  Y D V+R       EG I+ L   + LG H G 
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGAIIELETEKKLGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FVV  D   + + V     +E    +   + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVKKDMEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           +    +      KIR + D     + +  +   ++   +   G+A GQ  V Y  D    
Sbjct: 289 KGQEKE-IDITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIY--DEEAK 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|326771916|ref|ZP_08231201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces viscosus C505]
 gi|326638049|gb|EGE38950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces viscosus C505]
          Length = 395

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 188/390 (48%), Gaps = 27/390 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G++V+GV + L  +R  +      CC+ +D  DAR  
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRAQTRSGSRGCCSIEDSADARWA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +  YV+D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG D
Sbjct: 61  AQILGIPFYVWDLSEEFEERVVSDFLDEYRAGRTPNPCVRCNERVKFDALLERALALGFD 120

Query: 140 VLATGHYIRSR--LYVGDDG-KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +ATGHY R       G  G      + R +D  +DQSY L  + ++ L    FPLGD  
Sbjct: 121 AVATGHYARLSGGASSGRPGDPEGLTLRRAVDAAKDQSYVLAVSGREGLARTLFPLGDAP 180

Query: 197 -KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR  A   GL +A K DS DICFV  G     + R     A EG +V  +G++LG 
Sbjct: 181 SKAQVRAEAEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--AHEGAMVSPDGEVLGT 238

Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   +T+GQR+GLG++     G P +V+     ++ V+VGP E L    +    +  L
Sbjct: 239 HQGYFGFTVGQRKGLGLSQPAEDGRPRYVIETRPATNEVVVGPEELLSRTAVDSDGLVLL 298

Query: 312 GDGLF-------------EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSE 356
                             +   V   +  V++R+   PVP  V+ +     ++ +     
Sbjct: 299 AAPEPLTTGPDTGTTDSDDSPAVGWQEASVQVRAHGRPVPARVRVDAAQGLLHAELATPL 358

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGS 386
            GVA+GQ+ V Y  D +  +VL    ++ +
Sbjct: 359 RGVAAGQSLVVYGGD-DGDQVLAQATVTSA 387


>gi|323700751|ref|ZP_08112663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. ND132]
 gi|323460683|gb|EGB16548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans ND132]
          Length = 345

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 166/366 (45%), Gaps = 22/366 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VA+SGG+DS +  ALLK  G  ++ V         A +   +  AG         C
Sbjct: 1   MTIAVAVSGGMDSLLALALLKERGEPLLAVHGHFLPPSPAWETVTTGLAG--------AC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  +  D    F + VI PF + Y AG TP PC  CN  +KF  L    R LGA+ 
Sbjct: 53  AVLGVPFHALDLHASFDDRVIKPFVAEYKAGLTPNPCAMCNPRMKFGVLFDAARNLGAER 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+       +D  + R++ R  D  +DQSYFL     ++L    FPL    K  V
Sbjct: 113 LATGHYVSM-----EDRAQGRMLVRGADQSKDQSYFLSMVPVEKLRLAEFPLARTLKRDV 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
             +    GL    K++SQ+ICFV    Y   +      +   G  V  +G+++G H G+ 
Sbjct: 168 PAVLAAHGLTPPLKAESQEICFVPDDDYQHFLTS-RGDMPGPGPAVLPDGRVVGGHQGLW 226

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +T GQRRGLG+A  EPL+V+  D   + +IVGP+E L        ++N +         
Sbjct: 227 RHTQGQRRGLGIAWSEPLYVLEKDVPGNTLIVGPKEFLAAKGCVAGQVNLMCPVESWPG- 285

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
                  V+ R  Q   P  V+     +Y DF +       GQ    Y        VLGG
Sbjct: 286 ----TVLVQTRYRQKAKPARVRLTGGRLYFDFLEPHTRPTPGQVAAVYD---ESGTVLGG 338

Query: 381 GIISGS 386
           G+I  +
Sbjct: 339 GVIEKA 344


>gi|258404437|ref|YP_003197179.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796664|gb|ACV67601.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfohalobium retbaense DSM 5692]
          Length = 349

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 183/371 (49%), Gaps = 24/371 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           MR  VA+SGG DS      L+  G+DV+ +                     DV D  R  
Sbjct: 1   MRTAVAVSGGADSLFALLALREAGHDVLALHAHFLAPDAVDA---------DVQDRLRHC 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C T+ V   + D   +F   VI PF   YA G TP PC  CN  +KF  L    +QLG  
Sbjct: 52  CKTLGVDLEIVDLHHKFAELVITPFIEHYAQGMTPNPCALCNPRIKFGILRDAAKQLGCK 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             ATGHY+R  L    +G    ++CR  D  ++QSYFL    Q  L ++ FPLG   K +
Sbjct: 112 GFATGHYVR--LLQTPNGP---LLCRGNDPRKEQSYFLSLVPQASLDNVVFPLGTRHKST 166

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           ++    + G  I +  +SQ++CF+    Y   ++   A ++  G IV   G  LG H+G+
Sbjct: 167 IQGELEQRGFTIPESEESQEVCFIPDDDYRSFLQNTGAPLSGPGPIVDRAGNQLGHHSGL 226

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YT+GQRRGLG+A  EPL+V+  +  S+R++VG R   +     + E+N     L  + 
Sbjct: 227 WRYTLGQRRGLGIAYSEPLYVIDKEIRSNRLVVGTRAERQATGCSVHELN---TLLPFEK 283

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378
             D  + +V+    Q PVP  ++  ++ G+ + F + +   A GQ   FY   + +  VL
Sbjct: 284 WPD--QIWVQTNYRQQPVPCRIRIVSETGMEISFLEPKGPAAPGQVAAFY---TAKGYVL 338

Query: 379 GGGIISGSKRS 389
           GGGII  S R+
Sbjct: 339 GGGIIHDSTRT 349


>gi|58261940|ref|XP_568380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptococcus neoformans var. neoformans JEC21]
 gi|57230553|gb|AAW46863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 478

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 110/406 (27%), Positives = 180/406 (44%), Gaps = 43/406 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN---------------------- 56
           +   V V MSGGVDS+    +L+     +  V ++ ++                      
Sbjct: 68  EGDHVTVGMSGGVDSATTLRILREFPIHLDVVFMRNWDPLLSESPPESSLPPSPISLAYS 127

Query: 57  SRKASKRKGS---CCAGQDVYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASSYAA 110
           S   S R+ +   C   +D  D  +V   + +      + D  + + + V  P    +  
Sbjct: 128 SGSTSNREQNLSPCQWERDWNDVLKVATQVGIPKDSIKLVDLSKEYWSRVFEPAVGVWER 187

Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           G TP P VDCNR +KF  LL V  +     LATGHY R              + R +D  
Sbjct: 188 GGTPNPDVDCNREIKFGALLDVLPKKDRHFLATGHYGRVAHVPLLSHPGPSKLLRAVDKS 247

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYF 229
           +DQ+Y+L   T+QQL     PLG + K  VR LA   GL  A K +S  +CF+ ++GK+ 
Sbjct: 248 KDQTYYLSQMTEQQLSRAILPLGSLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFG 307

Query: 230 DVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL---DKN 286
           D + +  +     G +V+L+G+ L  H G+  YTIGQR  +   + +P+FV      +K 
Sbjct: 308 DFISQYTS-PPESGYLVNLSGERLAEHKGLWYYTIGQRARVANQL-KPMFVAKKGVGEKG 365

Query: 287 SSRVIV--GPRESLEVHRIYLREINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQR 343
           +  ++V       L    ++  + +W+ D    + +V +  K  +++R   +PV   +  
Sbjct: 366 TDILVVPGSDHPMLLCKSVHTSDFHWIHDTFPRELLVKEPEKVGIQVRHRMNPVGGRIVV 425

Query: 344 NDD--GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             +   V V+F    VGV+ GQ    +         LG G+I G+K
Sbjct: 426 GGNVKDVTVEFNDPIVGVSPGQVVAIWHD----GWCLGSGVIDGTK 467


>gi|256830660|ref|YP_003159388.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579836|gb|ACU90972.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 347

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 169/368 (45%), Gaps = 24/368 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +  +A+SGG DS +   LL+  G +V+ V  +   +   +  +              +C 
Sbjct: 3   KTAIALSGGADSLMSLLLLRETGAEVMAVHARFLGADDEALHERLHG----------LCA 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  ++ D    F   VI PF  +Y +G TP PC  CN  +KF  LL   R+LGAD L
Sbjct: 53  KLRVPFHLVDLRREFEELVIAPFVRAYQSGLTPNPCATCNPAIKFGLLLDRVRELGADRL 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R              + R +D ++DQSYFL    +++   + FPL D  K +VR
Sbjct: 113 ATGHYARLAR-----TPHGAALYRGLDADKDQSYFLSRVPRERFEQVIFPLADWTKSAVR 167

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
               E GL      +SQ++CF+    Y D ++  N  +   G I   +G +LGRH G+ N
Sbjct: 168 QALAERGLTPPAGRESQEVCFIPS-DYRDFLRERNVRLGGPGPITLADGTVLGRHAGLWN 226

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQR+GLG+A  +PL+V   D   +R++VGP+             N L          
Sbjct: 227 HTLGQRKGLGIAYSQPLYVTGKDFVQNRLLVGPKSETLSSGCRTGIPNLLWPPELWPG-- 284

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
              +   +    Q P P  V  +  G+ + F +       GQ    Y+++    +VL G 
Sbjct: 285 ---EILAQTIYRQRPEPARVSVDQTGMTITFPEPRPMPTPGQVAAVYSAE---GQVLAGA 338

Query: 382 IISGSKRS 389
           +I  +  +
Sbjct: 339 VIEEASHA 346


>gi|153807884|ref|ZP_01960552.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185]
 gi|149129493|gb|EDM20707.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185]
          Length = 354

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 101/368 (27%), Positives = 158/368 (42%), Gaps = 20/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDSSVV  LL   GY      +++            C A +D+  +    
Sbjct: 1   MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKI---GMDGAEYMDCSAEEDIELSTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +S  V D    + + V          G TP P V CN+ +KF        +   D 
Sbjct: 58  RKYGLSLEVVDLHREYWDNVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQRIGK-DFDY 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            ATGHY  +    G     +  +    D  +DQ+ FL      Q+  L FP+G + K  V
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKHEV 171

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R++A    L  A + DSQ ICF+ +  Y D V+R       EG I+ L  G+ LG H G 
Sbjct: 172 REIALNADLPSARRKDSQGICFLGKINYNDFVRRFLGE--KEGMIIELETGKKLGTHRGY 229

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG++ G P FV+  D   + + V     +     + + + + +++ D  +
Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVIKKDIQENIIYVSRGYGVKTQYGNELRINDFHFITDNPW 288

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375
           + A  +      KIR + +     + +  +    +   +   G+A GQ  V Y  D    
Sbjct: 289 QSAGKE-IDITFKIRHTPEFTKGKLVQEGERQFRILSSEKLQGIAPGQFGVVY--DEAAQ 345

Query: 376 RVLGGGII 383
             +G G I
Sbjct: 346 VCVGSGEI 353


>gi|156088637|ref|XP_001611725.1| tRNA methyl transferase family protein [Babesia bovis]
 gi|154798979|gb|EDO08157.1| tRNA methyl transferase family protein [Babesia bovis]
          Length = 665

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 116/407 (28%), Positives = 187/407 (45%), Gaps = 33/407 (8%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +  T+L +  L       RV   +SGGVDS+V   LLK  G+D+    L++++       
Sbjct: 270 ASGTQLGNPSLPTVLGQSRVACLVSGGVDSAVALWLLKSRGFDIEAFYLKVWSVENGD-- 327

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
            G C    D+  A  V   +NV  +V  +++ +   V+ PF +  + GETP P V CN  
Sbjct: 328 LGDCQWSADLEHAMGVTKLLNVPLHVVPFQDVYHQRVLDPFVAGASLGETPNPDVCCNEF 387

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRS--RLYVGDDGK-RRRIMCRPMDLERDQSYFLFAT 180
           +KF   L    + G   +A+GHY      L  G   +  R  +CR  DL +DQ+YFL   
Sbjct: 388 IKFGAFLDYAVRWGFSHIASGHYASIIEDLVPGTSTRIARLRLCR--DLRKDQTYFLSRL 445

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +Q QL  + FPL  + K  VR +AR +G    D+ +S  +CF+ +      +      + 
Sbjct: 446 SQSQLRRVMFPLSQLYKNEVRTIARTLGFSNYDRKESMGLCFLGKVDVKSFLSHRLGEV- 504

Query: 241 LEGDIVHLN-GQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVG 293
             G IV  + G  +GRH+G+ ++TIGQR G+   +       +  +VV  D +++ + V 
Sbjct: 505 -PGPIVDHDTGNCIGRHHGLFHFTIGQREGIARYLNSVRDTNQSRYVVAKDIDTNTLYVS 563

Query: 294 PRESLEV--------HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
            R   +          R  + +I W     F+  + D     +K+R S       +  +D
Sbjct: 564 TRYHTKCYTEPGSVRRRFRISDIRW-NVPDFKRFITDPNSLSMKVRHSPTLCRGDISFDD 622

Query: 346 ----DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
                G  V  EK+++G+A+GQ  V Y+        LG G I   +R
Sbjct: 623 LDTASGASVHLEKADIGLATGQYAVIYSG----LNCLGAGKIVAKQR 665


>gi|317505238|ref|ZP_07963170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella salivae DSM 15606]
 gi|315663667|gb|EFV03402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella salivae DSM 15606]
          Length = 366

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 163/372 (43%), Gaps = 20/372 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R+ + +SGGVDSSVV   +   G       + +       K +  C + +D+  A  
Sbjct: 8   KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMI---GPEEKEEWDCTSEEDLEMATA 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +    +    V D  + + + V          G TP P V CNR +KF            
Sbjct: 65  LTKRFDCQLKVIDCHKEYWSKVTRYTMDKVKMGFTPNPDVMCNRLIKFGAFDEKI-GFNY 123

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D++ATGHY ++    G     R+ +    D  +DQ+ FL      QL    FP+G+ +K 
Sbjct: 124 DLIATGHYAQTEWSDG-----RKWLITSPDPIKDQTDFLAQIYDWQLKKAIFPIGNFEKN 178

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A    L  A + DSQ ICF+    Y + V+R        GD++ L  G+ +G H 
Sbjct: 179 DVRKIAEREHLINAKRRDSQGICFLGDIDYNEYVRRYLGECV--GDVIELETGKKIGEHK 236

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G+  +TIGQR+GLG   G P FVV  D   + + V               + + + +   
Sbjct: 237 GLWFHTIGQRKGLGFGGG-PWFVVKKDVEHNILYVSHGYDPETAYKQSFKIHDFHAVTFC 295

Query: 315 LFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDS 372
               A+ D   +   KIR + + +P  +++  +  Y+   +    GVA GQ CV Y ++ 
Sbjct: 296 SEGVALPDLPERITFKIRHTPEYLPAKLEKTGEQSYIIHADSKIHGVAPGQFCVIYDAE- 354

Query: 373 NEARVLGGGIIS 384
              R  G G I+
Sbjct: 355 -HHRCYGSGEIT 365


>gi|78356066|ref|YP_387515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|123552952|sp|Q313S6|MNMA_DESDG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78218471|gb|ABB37820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 356

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 170/369 (46%), Gaps = 19/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M + VA+SGG DS      +   G+ V  +     +     +         +     + C
Sbjct: 1   MHIAVAVSGGTDSLFALLQVLEAGHQVTALHAHFLSPHDTPETT-----AHNTQAIEKAC 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +    +V D    FR  VI PF  +Y  G TP PC  CN ++KF  L    R+LGA  
Sbjct: 56  RALGADFHVEDLSAAFRKHVIEPFIDAYRQGRTPNPCARCNASMKFGLLADTARKLGAQA 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY R +  +   G     + R  D  +DQSYFL    Q +L    FPLG  +K+ V
Sbjct: 116 IATGHYARLQPDLPRPGNTVS-LWRGDDPAKDQSYFLSLVPQHRLACAVFPLGGWRKQDV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R   ++ G+     S+SQ+ICF+    Y   +    AG+   G +V  +G ++G HNG+ 
Sbjct: 175 RAHLKQRGIVPPLPSESQEICFIPGDDYRAYLTAHAAGLPGAGPMVLRDGHVVGHHNGLW 234

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDGLFEDA 319
            YT GQRRGLG+A  EPL+V+  D + + ++VG R+ L         +N  +    + DA
Sbjct: 235 QYTEGQRRGLGIAWSEPLYVLEKDVSRNALVVGTRKQLTARGCRCVGVNTLVPPDQWPDA 294

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV---YVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  +VK R  Q  +   V  + DG     V F  S    A+GQ    Y       R
Sbjct: 295 ------VYVKTRYRQTMIAAQVTPDADGADTMRVIFAASHTPPAAGQVAAVYD---AAGR 345

Query: 377 VLGGGIISG 385
           VL GGII+ 
Sbjct: 346 VLAGGIIAS 354


>gi|224014905|ref|XP_002297114.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968233|gb|EED86582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 509

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 114/402 (28%), Positives = 169/402 (42%), Gaps = 44/402 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDAR 77
           R+VVAMSGGVDSS    ++ +  DG +VIG+ +  +N           +    ++  DA+
Sbjct: 96  RIVVAMSGGVDSSYTTIIMYKICDGIEVIGLHMSNWNALDEDPDISNATNTREKEYTDAQ 155

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136
            V   +++  +   +   +   V  PF  S A    P P   CN  +KF  +      Q+
Sbjct: 156 SVAQHLSIPLHRVSFASEYWIQVFEPFVESLAELTMPNPDYGCNTFIKFGAMKKYAMGQM 215

Query: 137 GADVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            AD +ATGHY +   R Y GD+           D  +DQSYFL     +   ++ FPLG 
Sbjct: 216 NADFVATGHYAQLWHRGYTGDNDSSGVF----PDRSKDQSYFLSGVKGEAFRNVIFPLGH 271

Query: 195 MKKES----VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN- 249
           + K      VRD+A +  +  A K DS  ICF+ +  +   V +        G  V ++ 
Sbjct: 272 LAKSQTQQTVRDIAHQAAIPTASKRDSMGICFIGKRNFGQFVSQYLPEPPAPGTFVDVDT 331

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK---NSSRVIVG---PRESLEVHRI 303
           G+I+G H G ++YTIGQ   +  A     FV        + + V V       SL    +
Sbjct: 332 GEIVGYHEGSMHYTIGQGAKISGASA-RYFVCGKGSTGDDGNTVFVCNSTHHPSLYTDEL 390

Query: 304 YL--REINWLGDGLFED---------AVVDG--FKCFVKIRSSQDPVPVFV--QRNDD-- 346
            +     NW+G G   D          +V+G   K   + R  Q      V  QR+ D  
Sbjct: 391 SVDFDAFNWIGLGEKSDTDSFGHVPYPLVEGRPIKLLARTRHLQPLAQCTVSWQRSRDAN 450

Query: 347 ---GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
               + V FEK    +   Q    Y   S+    LGGG I G
Sbjct: 451 SLGKLTVQFEKPMRAITPCQVVSLYAG-SDGLICLGGGPIKG 491


>gi|321309601|ref|YP_004191930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801445|emb|CBY92091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma haemofelis str. Langford 1]
          Length = 368

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 185/375 (49%), Gaps = 29/375 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARR 78
            +VV+A+SGGVDS++ A LLK+  +D+  V +Q ++S   + +     C + +D+   + 
Sbjct: 5   KKVVIALSGGVDSAISAFLLKQKNHDLHAVYMQNWDSQVNEENAEDSGCSSREDLKYVKE 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137
           +C+ +N+   V+++   +   V  P+ +         P + CN  +KF  LL+   +  G
Sbjct: 65  ICNKLNIPLTVYNFVPEYWEYVFEPYLNLVQNNLLSNPDILCNSKIKFGVLLNRIIQDFG 124

Query: 138 AD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
            D  LATGH+ R    +  DG  R ++    +  +DQ+YFL      QL  + FPL D+ 
Sbjct: 125 PDIKLATGHWAR---VINRDG--RYMLAVCSNPNKDQTYFLSRLAPDQLKYILFPLQDIQ 179

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254
            KE +R++A+++ L + ++ DS  ICF+ + KY D ++        EGD+V +  G+ILG
Sbjct: 180 SKEEIREIAKDLELSVWNRRDSTGICFIGKRKYSDFMENFIDHE--EGDLVDIETGKILG 237

Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYLREIN 309
            H G   Y + QR GL +    E  +V   D   + V +         L     +  +I+
Sbjct: 238 THKGSHLYALHQRSGLALKGYEERYYVCKKDPKKNVVYLCRESQIPLYLHTTSTFCSDIH 297

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA-SGQACVF 367
           W+      +A   G + F+K R +   + V ++  ++G  ++  EK    +   GQ  VF
Sbjct: 298 WIN-----EAPNVGEELFIKARHTPSFLKVKLRSLENGECHITHEK--THITSPGQYVVF 350

Query: 368 YTSDSNEARVLGGGI 382
           Y  D N    LG GI
Sbjct: 351 YDLDRN--ICLGSGI 363


>gi|195400843|ref|XP_002059025.1| GJ15215 [Drosophila virilis]
 gi|194141677|gb|EDW58094.1| GJ15215 [Drosophila virilis]
          Length = 363

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 165/382 (43%), Gaps = 35/382 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV MSGGVDS+V A LLK  GY+V+GV ++ ++    S   G C   QD+ DA   C  
Sbjct: 5   VVVGMSGGVDSAVSAHLLKERGYNVLGVFMRNWDEHDES---GRCSGEQDLKDAELACRH 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141
           + +     +Y +++  AV   F   Y  G TP P + CN+ +KF          L  D +
Sbjct: 62  LQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKFDLFHRHALHTLQYDAV 121

Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           ATGHY R+ L     +          +  P D  +DQ++FL       L    FPLG +K
Sbjct: 122 ATGHYARNSLGDFLEHSSSQTPEDVRLLIPADTFKDQTFFLAGIAHAALQRTMFPLGGLK 181

Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI-VHLNGQILG 254
           K  V+ LAR +GL  +A+K +S  ICFV +  +   ++      +  G      +G ++G
Sbjct: 182 KTEVKQLARRIGLHRLAEKRESTGICFVGKRDFKAFIQEYI--SSKPGHFVDVDSGVVVG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H GI  +T+GQR  L   + +P FV   D  S+ +  GP  ++ + R            
Sbjct: 240 THEGIHQWTVGQRCRLSSHL-QPYFVARKDAASNIIY-GPL-AMNIPRCTATAF----TS 292

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                   G         ++  V   ++       V  +     +  GQ  VFY      
Sbjct: 293 ANSTGCATGH-------HTKPLVECQLRP----FEVQLDAPLRAITPGQYAVFYDD---- 337

Query: 375 ARVLGGGIISGSKRSDAVEESL 396
           A  LG   I   +    +E+ +
Sbjct: 338 AACLGAARILHGEPLQCLEQQV 359


>gi|237716742|ref|ZP_04547223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|229442725|gb|EEO48516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
          Length = 368

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 159/372 (42%), Gaps = 49/372 (13%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGG DSSV A  L   GY+VIGVT + Y    +++          + DAR + + + + 
Sbjct: 1   MSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARNLAERLGIR 51

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           H  +D  E F   +I  F   Y AG TP+PC  CN  +K+  L  +  ++G   +ATGHY
Sbjct: 52  HITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIATGHY 111

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
            ++             +    D ++DQ++FL+   Q  L  +  P+GD+ K   R  A E
Sbjct: 112 AQNIQL-----NETFYITYAADSDKDQTFFLWGLKQDILNRMLLPMGDITKAEARAWAAE 166

Query: 207 MGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL------------------------ 241
            G   +A K DS  +CF     Y   +K                                
Sbjct: 167 HGFRKVATKKDSIGVCFCPM-DYRTFLKDWLVRNGQMSVSNSEASINNSQTSGSDKQTWS 225

Query: 242 ----EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
                G  V   G  +  H G   YTIGQRRGLG+ +  P+FV  +D   + V++    S
Sbjct: 226 DRIRRGRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEIDPEKNEVMLASLSS 285

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356
           LE   ++L++ N +     ++  +      VKIR  +      +    D  ++V   +  
Sbjct: 286 LEKTEMWLKDWNLVN----QERTLGRSDIIVKIRYRKQENYGTITVTSDHLLHVQLHEPL 341

Query: 357 VGVASGQACVFY 368
             +A GQA  FY
Sbjct: 342 TAIAPGQAAAFY 353


>gi|329946338|ref|ZP_08293905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527314|gb|EGF54312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 387

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 19/383 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G++V+GV + L  +R  +      CC+ +D  DAR  
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRSQTRSGSRGCCSIEDSADARWA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +  YV+D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG D
Sbjct: 61  AQILGIPFYVWDLSEEFEERVVADFLDEYRAGRTPNPCVRCNERVKFDALLERALALGFD 120

Query: 140 VLATGHYIRSR--LYVGDDG-KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-M 195
            +ATGHY R       G  G      + R +D  +DQSY L  + ++ L     PLGD  
Sbjct: 121 AVATGHYARLSGGAASGRPGDTNGLTLRRAVDAAKDQSYVLAVSGREGLARALLPLGDAS 180

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K  VR  A   GL +A K DS DICFV  G     + R     A EG +V  +G++LG 
Sbjct: 181 SKAQVRAEAEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--ASEGAMVSPDGEVLGT 238

Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   +T+GQR+GLG++     G P +V+     ++ V+VGP E L    +    +  L
Sbjct: 239 HQGYFGFTVGQRKGLGLSRPADDGRPRYVIETRPATNEVVVGPEELLSRTTVDGDGLVLL 298

Query: 312 GDGLF-----EDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQA 364
            +        +   V   +  V++R+   PV   V+ ++    +  +      GVA+GQ+
Sbjct: 299 AEPEPLTGDSDTPTVGWQEGSVQVRAHGRPVSARVRVDEAAGLLRAELATPLRGVAAGQS 358

Query: 365 CVFYTSDSNEARVLGGGIISGSK 387
            V Y   +N  +VL    ++ ++
Sbjct: 359 LVVYGG-TNGDQVLAQATVTSAQ 380


>gi|237707989|ref|ZP_04538470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|229457975|gb|EEO63696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
          Length = 354

 Score =  332 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 163/370 (44%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDS+VV  LL + GY      +++           +C A +D+       
Sbjct: 1   MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKI---GMDGDEDLTCTAEEDIELCTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG--A 138
               ++  + D   ++ + V+         G TP P V CN+ +KF       +++G   
Sbjct: 58  RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCF---EQEVGHLY 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY         +   +  +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYASIL-----EKDGKIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y D ++R       EG I+    G+ +G H 
Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGE--KEGAIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D N + + V      E        L + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLSGG-PWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITED 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           L+E           KIR +   +   + R +    +   +   G+A GQ  V Y  D+  
Sbjct: 287 LWEG--DSPVDVSFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDAE- 343

Query: 375 ARVLGGGIIS 384
              +G G I+
Sbjct: 344 -ICVGSGEIT 352


>gi|331695625|ref|YP_004331864.1| tRNA-specific 2-thiouridylase mnmA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950314|gb|AEA24011.1| tRNA-specific 2-thiouridylase mnmA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 359

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 141/374 (37%), Positives = 195/374 (52%), Gaps = 22/374 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +  A       CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSETPDALRSGSRGCCSREDADDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D +++  YV+D+   F   V+  F ++YAAG TP PCV CN  +KF+ LL     LG D
Sbjct: 61  ADVLDIPFYVWDFAAPFSAGVVDDFVAAYAAGRTPNPCVRCNERIKFAALLDKALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY R    V         + R +D  +DQSY L   T  QL    FP+GD  K  
Sbjct: 121 AVCTGHYARLSNGV---------LRRAVDDGKDQSYVLAVLTPFQLAHALFPIGDTPKAQ 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR  A E GL +ADK DS DICF+  G     +       A  G IV  ++G+++G H G
Sbjct: 172 VRAEAAERGLRVADKPDSHDICFIPSGDTRAFLAERLG--ARPGPIVDAVSGEVIGDHAG 229

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  +T+GQR+G+GV    A G P +V+ ++  S+ V VGP E+L+V  I      W    
Sbjct: 230 VHGFTVGQRKGIGVDRPAADGRPRYVLGIEPVSATVTVGPAEALDVREIDTETPVWGCGT 289

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSN 373
             +  V     C V++R+     P        DG++V+  +   GVA GQ+  FY  D  
Sbjct: 290 APDGPVS----CVVQVRAHGGLAPATAWPTARDGLHVELGEPLRGVAPGQSAAFYRPDPG 345

Query: 374 EARVLGGGIISGSK 387
              VLG  +IS ++
Sbjct: 346 GDVVLGSAVISAAR 359


>gi|295394424|ref|ZP_06804648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972776|gb|EFG48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 387

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 130/408 (31%), Positives = 184/408 (45%), Gaps = 63/408 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD------------GYDVIGVTLQLYNSRKASKRKGS-- 66
           M+++ AMSGG                         G++V+GV L L +    + R GS  
Sbjct: 1   MKILAAMSGG------------VDSAVAAARAVDAGHEVVGVHLAL-SRMPGTMRTGSRG 47

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC  +D  DA RV   + +  YV+D+ ERF+  ++  F + Y+ G TP PC+ CN  +KF
Sbjct: 48  CCTIEDSRDAHRVAGMLGIPFYVWDFSERFKEDIVDDFIAEYSQGRTPNPCMRCNERIKF 107

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           + LL     LG D +ATGHY         D      + R +D+ +DQSY L   T+ QL 
Sbjct: 108 AALLDRALALGFDAVATGHYAEIVY----DQDGHPELHRGVDMNKDQSYVLGVLTEDQLR 163

Query: 187 DLRFPLG-DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
              FP+G    K  VR  A + G  +A+K DS DICF+  G     +          G I
Sbjct: 164 HCYFPIGASASKADVRAEAADRGFPVANKPDSYDICFIPDGDTKAWLADKIP--MRPGLI 221

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVH 301
               G  LG H+G + +TIGQR+GL +    A G+P +VV +D  ++ V VG RE+L V 
Sbjct: 222 KDQEGNALGEHDGAMTFTIGQRKGLALERPAADGKPRYVVDIDARNNTVTVGGREALSVD 281

Query: 302 RIYLREINWLGDGLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRND-------------- 345
           R+      W G       D+      C V+IR+  +PV   V   D              
Sbjct: 282 RLEGIRATWCGQPAQNMGDSEDTALDCEVQIRAHAEPVSARVWLGDVVTQAPESEYNVPT 341

Query: 346 -----DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
                  ++V  ++   GVA GQ  V Y       RVLG   I  + R
Sbjct: 342 PRPAGQTLHVAVKEPLSGVAPGQTMVIYEG----TRVLGQATIDRANR 385


>gi|212690555|ref|ZP_03298683.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855]
 gi|212666904|gb|EEB27476.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855]
          Length = 354

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 163/370 (44%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDS+VV  LL + GY      +++           +C A +D+       
Sbjct: 1   MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKI---GMDGDEDLTCTAEEDIELCTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG--A 138
               ++  + D   ++ + V+         G TP P V CN+ +KF       +++G   
Sbjct: 58  RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCF---EQEVGHLY 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY         +   +  +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYASIL-----EKDGKLWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y D ++R       EG I+    G+ +G H 
Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGE--KEGAIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D + + + V      E        L + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLSGG-PWFVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITED 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           L+E           KIR +   +   + R +    +   +   G+A GQ  V Y  D+  
Sbjct: 287 LWEG--DSPVDVSFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDAE- 343

Query: 375 ARVLGGGIIS 384
              +G G I+
Sbjct: 344 -ICVGSGEIT 352


>gi|237725261|ref|ZP_04555742.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D4]
 gi|265754225|ref|ZP_06089414.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|229436527|gb|EEO46604.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4]
 gi|263234934|gb|EEZ20489.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 354

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 163/370 (44%), Gaps = 24/370 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M +   +SGGVDS+VV  LL + GY      +++           +C A +D+       
Sbjct: 1   MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKI---GMDGDEDLTCTAEEDIELCTATA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG--A 138
               ++  + D   ++ + V+         G TP P V CN+ +KF       +++G   
Sbjct: 58  RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCF---EQEVGHLY 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D  ATGHY         +   +  +    D  +DQ+ FL      Q+  L FPLG + K 
Sbjct: 115 DKTATGHYASIL-----EKDGKIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257
            VRD+AR   L  A + DSQ ICF+ +  Y D ++R       EG I+    G+ +G H 
Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGE--KEGAIIEMETGKRIGTHK 227

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314
           G   +TIGQR+GLG++ G P FV+  D N + + V      E        L + +++ + 
Sbjct: 228 GYWFHTIGQRKGLGLSGG-PWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITED 286

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           L+E           KIR +   +   + R +    +   +   G+A GQ  V Y  D+  
Sbjct: 287 LWEG--DSPVDISFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDAE- 343

Query: 375 ARVLGGGIIS 384
              +G G I+
Sbjct: 344 -ICVGSGEIT 352


>gi|114686943|ref|XP_001137340.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
           methyltransferase 1 isoform 1 [Pan troglodytes]
          Length = 390

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 157/381 (41%), Gaps = 59/381 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR-----------------------IMCRPMDLERDQSYFL 177
           +ATGHY R+ L   +   R                          + +  D  +DQ++FL
Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRIN 236
              +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +  
Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242

Query: 237 AGIALEGDIVHL-NGQILGRHNGIINY---------TIGQRRGLGVAMGEPLFVVYLDKN 286
                 G  + + + ++LG H G   +          +   RG    + EP  +   D  
Sbjct: 243 Q--PRPGHFISIEDNKVLGTHKGWNVFLSPLGCLVPPLCFYRGTVGCLREPC-MCEKDSV 299

Query: 287 SSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQ 342
              V V P     +L    +    ++W+ +      V D   +C  + R     V   +Q
Sbjct: 300 KGNVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVRCVLQ 359

Query: 343 RNDDGVYVDFEKSEVGVASGQ 363
               G  V           GQ
Sbjct: 360 ----GGRV----------PGQ 366


>gi|227488018|ref|ZP_03918334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542661|ref|ZP_03972710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092028|gb|EEI27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181859|gb|EEI62831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 299

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 158/312 (50%), Gaps = 19/312 (6%)

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD + +  YV+D+ +RF+  VI  F  SYA GETP PC+ CN  +KF  LL     LG 
Sbjct: 1   MCDKLGIPFYVWDFSDRFKEDVIDDFVESYAMGETPNPCLRCNEKIKFRALLERGIALGF 60

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY      + ++G     + R +D ++DQSY L   T  +L    FP+G+ +K 
Sbjct: 61  DAVATGHYAT----IDENG----YLRRSVDPKKDQSYVLGVLTADELAHCYFPVGNTEKP 112

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R+ A   G  +A K DS DICF+  G     + +        G IV  +G  L  H+G
Sbjct: 113 QIREEAARHGFSVAKKPDSYDICFIPDGNTKAFLGKHIG--MRPGVIVDEDGNKLQDHDG 170

Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
           +  YTIGQR+GL +    A G P +V  +D  +  V VGPRE L VH I    +  L   
Sbjct: 171 VYGYTIGQRKGLNIRVPAADGRPRYVTDIDAATGTVTVGPREHLAVHTIIADRLKQLHPA 230

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
              D      +C V++R+  + VP       D + +  ++   GVA GQA V Y  D   
Sbjct: 231 FNGD-----VECQVQVRAHGEVVPCSAHIEGDTMTLTLKQPLSGVARGQAAVVYLPDQAG 285

Query: 375 ARVLGGGIISGS 386
             VLG G I G+
Sbjct: 286 DIVLGSGTICGT 297


>gi|212550689|ref|YP_002309006.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548927|dbj|BAG83595.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 355

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 169/369 (45%), Gaps = 22/369 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++   +SGGVDSSVV   LK  GYD +   +Q+    + ++    C + +D+     + 
Sbjct: 1   MKIAALVSGGVDSSVVVHQLKDMGYDPVIFYIQI--GMENNEGYIDCSSEEDIEITTFIA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG--A 138
                   +   ++ +   +I     +   G TP P + CN+ +KF       ++ G   
Sbjct: 59  RKYGCRIEIVSLQKEYWENIIAYTIDTVHRGLTPNPDIMCNKLIKFGIF---EQRWGYEF 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY  +     +       +    D  +DQ+YFL      Q+  L FP+G ++K 
Sbjct: 116 DKIATGHYATTTEINDE-----IYLSTAFDKVKDQTYFLGQIDYLQISKLMFPIGHLQKS 170

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257
            VR +A +  L  A + DSQ ICF+ +  Y + ++R        G IV L  G+ILG H 
Sbjct: 171 EVRIIAAKQDLPSAFRKDSQGICFLGKINYSNFIRRYLGEKL--GKIVELETGKILGNHK 228

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314
           G   YTIGQR+GL ++ G P FV+  D   + V V             + L  ++++   
Sbjct: 229 GYWFYTIGQRKGLYLSGG-PWFVIKKDVQQNIVFVSNDYKSKIRYSKSLNLERVHFITRN 287

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           +F+D + D  +   KIR +       ++   +   ++ E    G+A+GQ  V Y  D   
Sbjct: 288 IFDDFI-DTKEIAFKIRHTPKFTFGKIRHIGNVYRIESESKIQGIAAGQFGVIY--DKRC 344

Query: 375 ARVLGGGII 383
              LG G+I
Sbjct: 345 KLCLGSGVI 353


>gi|288919111|ref|ZP_06413450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EUN1f]
 gi|288349455|gb|EFC83693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EUN1f]
          Length = 358

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/373 (38%), Positives = 189/373 (50%), Gaps = 28/373 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDAR 77
             M+V+ AMSGGVDS+V AA     G+DV GV L L  S  + +     CC  +D  DAR
Sbjct: 5   SGMKVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPASDRGGSRGCCTLEDARDAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R  D + +  YV+D  +RF   VI  F + YAAG TP PCV CN  +KFS +L     LG
Sbjct: 65  RAADVLGIPFYVWDLADRFEAEVIDQFVADYAAGRTPNPCVQCNERIKFSAVLDKALALG 124

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D + TGH+ R    +  DG     + R +DL +DQSY L      QL   RFPLGD  K
Sbjct: 125 FDAVVTGHHAR----LDPDGT----LRRSVDLAKDQSYVLGTLRPDQLAAARFPLGDSTK 176

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRH 256
             VR+ A   GL +ADK DS DICFV  G     ++         G IV    G+ LG H
Sbjct: 177 AQVREEAARRGLGVADKPDSHDICFVAAGDTGAWLRDRLG--PRPGPIVDSETGETLGEH 234

Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           +G   +T+GQRRGL +      G P +V+ +   +S V VGP  +L++  +    I W  
Sbjct: 235 DGAYAFTVGQRRGLRLGHPAPDGRPRYVLEVSPVTSTVTVGPARALDMRSLVAERIVWPH 294

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372
           +G           C  ++R+    VP  V+   + + V   +   G A+GQA VFY  D 
Sbjct: 295 EGPVS--------CVAQVRAHGGVVPAVVRARGEELDVQLVEPVRGTAAGQAVVFYDGD- 345

Query: 373 NEARVLGGGIISG 385
              RVLGGG I  
Sbjct: 346 ---RVLGGGRIRS 355


>gi|325066902|ref|ZP_08125575.1| tRNA-specific 2-thiouridylase MnmA [Actinomyces oris K20]
          Length = 384

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 174/369 (47%), Gaps = 31/369 (8%)

Query: 44  GYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
           G++V+GV + L  +R  +      CC+ +D  DAR     + +  YV+D  E F   V+ 
Sbjct: 13  GHEVVGVHMALTRNRAQTRSGSRGCCSIEDSADARWAAQILGIPFYVWDLSEEFEERVVS 72

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR-----SRLYVGDDG 157
            F   Y AG TP PCV CN  VKF  LL     LG D +ATGHY R     S  + GD  
Sbjct: 73  DFLDEYRAGRTPNPCVRCNERVKFDALLERALALGFDAVATGHYARLSGGASSGHPGD-- 130

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSD 216
                + R +D  +DQSY L  + ++ L    FPLGD   K  VR  A   GL +A K D
Sbjct: 131 PEGLTLRRAVDAAKDQSYVLAVSGREGLARALFPLGDAPSKAQVRAEAEARGLPVASKPD 190

Query: 217 SQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-- 274
           S DICFV  G     + R     A EG +V  +G++LG H G   +T+GQR+GLG++   
Sbjct: 191 SYDICFVADGDTRGFLTRSLG--AHEGTMVSPDGEVLGTHQGYFGFTVGQRKGLGLSHPA 248

Query: 275 --GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF-------------EDA 319
             G P +V+     ++ V+VGP E L    +    +  L D                   
Sbjct: 249 EDGRPRYVIETRPATNEVVVGPEELLSRTAVDGDGLVLLADPEPLTTGPDTGTTDSDGSP 308

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V   +  V++R+   PVP  V+ +     ++ +      GVA+GQ+ V Y  D +  +V
Sbjct: 309 AVGWQEASVQVRAHGRPVPAMVRVDAAQGLLHAELATPLRGVAAGQSLVIYGGD-DGDQV 367

Query: 378 LGGGIISGS 386
           L    ++ +
Sbjct: 368 LAQATVASA 376


>gi|134118155|ref|XP_772245.1| hypothetical protein CNBM0130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254856|gb|EAL17598.1| hypothetical protein CNBM0130 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 424

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/406 (26%), Positives = 178/406 (43%), Gaps = 43/406 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN---------------------- 56
           +   V V MSGGVDS+    +L+     +  V ++ ++                      
Sbjct: 8   EGDHVTVGMSGGVDSATTLRILREFPIHLDVVFMRNWDPLLSESPPESSLSPSPISLAYP 67

Query: 57  SRKASKRKGS---CCAGQDVYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASSYAA 110
           S   S R+ +   C   +D  D  +V   + +      + D  + + + V  P    +  
Sbjct: 68  SGSTSNREQNLSPCQWERDWNDVLKVATQVGIPKDSIKLVDLSKEYWSRVFEPAVGVWER 127

Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           G TP P VDCNR +KF  LL    +     LATGHY R              + R +D  
Sbjct: 128 GGTPNPDVDCNREIKFGALLDALPKKDRHFLATGHYGRVAHAPLLSHPGPSRLLRAVDQS 187

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYF 229
           +DQ+Y+L   T+QQL     PLG + K  VR LA   GL  A K +S  +CF+ ++GK+ 
Sbjct: 188 KDQTYYLSQMTEQQLSRAILPLGSLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFG 247

Query: 230 DVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL---DKN 286
           D + +  +     G +V+L+G+ L  H G+  YTIGQR  +   + +P+FV      +K 
Sbjct: 248 DFISQYTS-PPESGYLVNLSGERLAEHKGLWYYTIGQRARVANQL-KPMFVAKKGVGEKG 305

Query: 287 SSRVIV--GPRESLEVHRIYLREINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQR 343
           +  ++V       L    ++  + +W+      + +V +  K  +++R   +PV   +  
Sbjct: 306 TDILVVPGSDHPMLLCKSVHTSDFHWIHRTFPRELLVKEPEKVGIQVRHRMNPVGGRIVI 365

Query: 344 NDD--GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
             +   V V+F    VGV+ GQ    +         LG G+I G+K
Sbjct: 366 GGNVKDVTVEFNDPIVGVSPGQVVAIWHD----GWCLGSGVIDGTK 407


>gi|50291717|ref|XP_448291.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527603|emb|CAG61252.1| unnamed protein product [Candida glabrata]
          Length = 406

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 107/392 (27%), Positives = 181/392 (46%), Gaps = 34/392 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKA-SKRKGSCCAGQDVY 74
             K   VV+AMSGGVDSSV AAL     Y    GV +Q ++  +A        C  +D  
Sbjct: 23  PAKFDNVVIAMSGGVDSSVAAALF--AHYPKATGVYMQNWSESQALESIAEEPCYEKDWK 80

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D  ++ D + V     ++E  +   V  P    Y  G TP P + CN+ VKF  L S   
Sbjct: 81  DVAKLGDFLGVPVEKVNFESDYWIDVFEPMLQEYDQGRTPNPDIGCNKFVKFGKLKSYLD 140

Query: 135 -QLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + G D   L TGHY R   ++     +   + R    ++DQSY+L       L  L  P
Sbjct: 141 QKYGHDNYHLVTGHYSRVLQHL---ESKEYHLLRGYYPQKDQSYYLSQINGGILPRLVLP 197

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHL-- 248
           +G + K  VRD+ARE+ L  A+K DSQ ICFV   ++    K + +      G+++ +  
Sbjct: 198 MGHLTKPEVRDMARELQLPTANKRDSQGICFVNNSQHKKFNKFLEHYLTNKPGNVITVEP 257

Query: 249 --NGQILGRHNGIINYTIGQRRGLGVAMGE-------PLFVVYLDKNSSRVIVG---PRE 296
                + G H G+ +YT+GQ+ G G+++ +         +V      ++ +++       
Sbjct: 258 TGEKTVWGTHKGLWSYTLGQKIGDGISLPQADPRYTGAWYVSEKIPATNEIVIVRGRENP 317

Query: 297 SLEVHRIYLREINWLGDG-LFEDAVVDGF---KCFVKIRSSQDPVPVF-VQRNDDGVYVD 351
            L   ++ +++  +LG+      A+ +     +   + RS  +P P+  +  + D  ++ 
Sbjct: 318 QLYRDKLRIQDFEYLGEPQTIRKAITEALQRGELRARYRSLMEPEPLISINTDADEFHLQ 377

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           F++ +  +A GQ C       ++ R+LG G I
Sbjct: 378 FQRPQRAMAPGQFCCL----LSQNRILGSGPI 405


>gi|255994055|ref|ZP_05427190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saphenum ATCC 49989]
 gi|255993723|gb|EEU03812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saphenum ATCC 49989]
          Length = 348

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 189/377 (50%), Gaps = 34/377 (9%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +D+     +V V  SGGVDS+    LLK  GYDV  V L++                +D+
Sbjct: 1   MDRLGDKTKVAVGFSGGVDSTAACLLLKEKGYDVHPVYLRM-------------GEAEDI 47

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +++ + I +   V D  +RF N+V+  F  +Y  G TP PC+ CN  VKF  L+   
Sbjct: 48  SELKKIANDIGLELKVLDLTDRFNNSVVDNFKKAYMNGMTPNPCIVCNPLVKFRGLMDFA 107

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G D++ATGHY R      +      ++CR  + ++DQSY L+         L  PLG
Sbjct: 108 DDNGIDLIATGHYARIVKNGDN-----PVLCRGRNAQKDQSYMLYGLDSNVFERLILPLG 162

Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQ 251
           +   KE +R++ R   +  ++K DSQ+ICF++Q + Y             EG+ V   G 
Sbjct: 163 EYGNKEDIRNILRTNEIINSEKPDSQEICFLKQDESYKKFF------PEREGEFVDAEGN 216

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           ILGRH GI N+T+GQR+GLG+   +P++V+ +  +++RV++G  E L   R  + ++ +L
Sbjct: 217 ILGRHRGIHNFTVGQRKGLGITFSKPMYVLGIAASTNRVMLGSEEELYKERATITDMKYL 276

Query: 312 GDGLFE--DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFY 368
           G+ + +  D    G     K+R S     +  +      + + F +    +A GQ+ V Y
Sbjct: 277 GNDISKCTDDAHKGL-YRAKVRYSSAEYEIKEINLKGSDLEIVFNEPVRAIAPGQSLVVY 335

Query: 369 TSDSNEARVLGGGIISG 385
             D     V+ GGII G
Sbjct: 336 CRDV----VILGGIIVG 348


>gi|218887924|ref|YP_002437245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226704770|sp|B8DRE0|MNMA_DESVM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218758878|gb|ACL09777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 351

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 174/363 (47%), Gaps = 16/363 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ VA+SGG DS     LL   G DV G+  +    R A +  G+    + +     +C
Sbjct: 1   MKIAVALSGGTDSLFALLLLLEQGQDVFGLHARFLPPR-ADQPSGNPDPAEAIG---AMC 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V  +  D  + F  AV+ PF   Y  G TP PC  CN T+KF  LL   R LGA  
Sbjct: 57  ARLGVDFHAVDLADAFEEAVVAPFIEEYVVGRTPNPCARCNATMKFGLLLDAARALGAAR 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY+R   +          + R  D  +DQSYFL    + +L    FPLG+ +KE V
Sbjct: 117 LATGHYVRQLRHPQ----WGMTLQRGADPAKDQSYFLSLVDRARLEQAVFPLGNWRKEQV 172

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           +    +  +     S+SQ+ICFV    Y   ++     +   G IV + G+ +G H G+ 
Sbjct: 173 KAELVKRNIVPPLPSESQEICFVPGDDYRAFLRDRQVRLPGPGPIVTMRGRKIGSHKGLW 232

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT GQRRGLG+A  EPL+VV  D  ++ ++VG RE L        ++N     L  D  
Sbjct: 233 QYTEGQRRGLGIAWEEPLYVVSKDMENNVLLVGGREHLAARGCLTEDVN-----LLVDPA 287

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
               +  V+ R  Q P P  V   D G+ V F + +   A GQ    Y ++     VL G
Sbjct: 288 DWPAEISVRTRYRQAPQPARVTVGDTGMAVRFREPQTPPARGQVAAVYDAE---GHVLAG 344

Query: 381 GII 383
           G+I
Sbjct: 345 GVI 347


>gi|260642609|ref|ZP_05416575.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260621349|gb|EEX44220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 365

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/394 (27%), Positives = 168/394 (42%), Gaps = 57/394 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV++ MSGG DSSV A  L   GY+V G+T + Y    +++          + DAR 
Sbjct: 4   ENRRVLLGMSGGTDSSVAAMRLLEGGYEVTGITFRFYELNDSTEY---------LEDARS 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + H  +D  + FR  +I  F   Y  G TP+PC  CN  +K+  L  V  ++G 
Sbjct: 55  LAERLGIRHITYDARDVFRKQIIEYFVQEYMEGRTPVPCTLCNNCLKWPLLAKVADEMGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY++     G        +    D ++DQS+FL+   Q  L  +  P+G++ K 
Sbjct: 115 FYIATGHYVQKVELEGT-----YYITHAADPDKDQSFFLWGLKQDILRRILLPMGNITKV 169

Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--------------EG 243
             R  A E G   +A K DS  +CF     Y   +K   A                   G
Sbjct: 170 EARVWAAERGFQKVATKKDSIGVCFCPM-DYRSFLKEWLARNGQLRSENVSCWSEMVRRG 228

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
             V   G  +G H G   YTIGQRRGLG+ +  P+FV  +    + V++    +LE   +
Sbjct: 229 RFVDEKGNFIGWHEGYPFYTIGQRRGLGIHLNRPVFVKEIYPEKNEVVLSSLSALEKTEM 288

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE------ 356
            L++ N +        ++      VKIR  +      V    D  +++   +        
Sbjct: 289 QLKDWNLVN----PQKILGYNDVIVKIRYRKQENHCTVTVTPDNLLHIQLHEPLTAIAAG 344

Query: 357 ---VGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                        FY        +LGGGII  ++
Sbjct: 345 QAAA---------FYRD----GLLLGGGIIVNAR 365


>gi|298528464|ref|ZP_07015868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512116|gb|EFI36018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 344

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 175/366 (47%), Gaps = 28/366 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGG+DS     +L+ +G+DV+ +  + +        K            + +C
Sbjct: 1   MRIAVAVSGGLDSLASLVMLREEGHDVLALHARFFPRLDEHLEKRL----------KGIC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ V  +V   ++ F   VI PF   Y  G TP PC  CN  +KF  LL    +LGA  
Sbjct: 51  TSLGVEMHVTLLQDEFAARVIDPFVQDYLDGLTPNPCARCNMRIKFGLLLDRALELGASA 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY   +           ++ R +D  +DQSYFL     ++L   +FP+    K S+
Sbjct: 111 LATGHYAGIKKNSS-----GPVLMRALDQAKDQSYFLCLVPPRRLARAKFPMYHHFKSSM 165

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG--IALEGDIVHLNGQILGRHNG 258
           ++  +   + +  + +S +ICF+  G Y D +          L G IV  +G+ LGRH G
Sbjct: 166 QEFLQNRNITVPAREESNEICFIP-GDYRDFIAGRLEKSHEPLPGPIVDSSGRTLGRHQG 224

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQRRGLG+A   PL+V+  D  S+ ++VG RE L       R++N     + E+
Sbjct: 225 LWRYTPGQRRGLGIAFKHPLYVLRKDLASNTLVVGAREELGAGEFQARDVN-----ILEE 279

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE-KSEVGVASGQACVFYTSDSNEARV 377
                    V+ R  Q   P  V+     + V ++ +  + V  GQ    Y   S + +V
Sbjct: 280 PRKWPLDLLVQTRYRQKARPAEVELWGQRMRVRYKGEPGLPV-PGQVAAVY---SPKGQV 335

Query: 378 LGGGII 383
           L GGII
Sbjct: 336 LAGGII 341


>gi|311744042|ref|ZP_07717848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromicrobium marinum DSM 15272]
 gi|311313172|gb|EFQ83083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromicrobium marinum DSM 15272]
          Length = 363

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 183/378 (48%), Gaps = 21/378 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72
           +      MRVV AMSGGVDS+V AA     G+DV GV L L  N R        CC+ +D
Sbjct: 1   MPDEAGAMRVVAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRNPRSYRSGARGCCSIED 60

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             DARR  D + ++ YV+D  E F + V+  F + YAAG TP PC+ CN ++KF+ +L  
Sbjct: 61  AGDARRAADALGIAFYVWDMSEEFADHVVDDFVAEYAAGRTPNPCLRCNESIKFAAVLDR 120

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG D + TGHY   R            M R +D  +DQSY L   TQ QL    FPL
Sbjct: 121 ALALGFDAVVTGHYADLRTAPD----GTIEMHRAVDAAKDQSYVLGVLTQDQLAHSMFPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G   K  VR  A   GL +A K DS DICF+  G     +          G+IV   G +
Sbjct: 177 GGSVKSDVRIEAERRGLQVATKPDSHDICFIPDGDNAAWLTEKLG--PRPGEIVDEQGAV 234

Query: 253 LGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           +G H+G   +TIGQRRGL +      G P FV+ ++  S  V VG RESL V R+   + 
Sbjct: 235 VGSHDGAYAFTIGQRRGLRLGVPADDGRPRFVLDIEPVSGTVTVGARESLTVDRLECIKP 294

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
            W G               V++R+        V+  +  V V+      G+A GQACV Y
Sbjct: 295 LWCGSPPVS------LHATVQLRAHGAEHRARVRVAEGAVDVELTDPAEGIAPGQACVIY 348

Query: 369 TSDSNEARVLGGGIISGS 386
                  RV+G   I+ +
Sbjct: 349 DG----TRVVGSATIART 362


>gi|313887221|ref|ZP_07820916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923312|gb|EFR34126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 376

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 159/378 (42%), Gaps = 19/378 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D R+ +  SGGVDSSV   LL   G+      +++    +       C A +D+    
Sbjct: 10  PRDSRIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDEDG-GYLDCPAEEDIELVT 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +    ++   V D  + + + V+     +   G TP P V CN+ +KF           
Sbjct: 69  LLARRYDLHLEVIDLHKLYWDRVVTYTMDAVKRGLTPNPDVMCNKLIKFGAFEERC-GSS 127

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY   R       +    +    D  +DQ+ FL     +Q+  L FP+G + K
Sbjct: 128 YDYIATGHYATIRKTA----EGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGHLPK 183

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRH 256
           E VR +A E  L  A + DSQ ICF+ Q  Y D ++R        GDI+    G+ +G H
Sbjct: 184 EEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLG--TQTGDIIDHETGEKIGEH 241

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGD 313
            G   +TIGQR+GLG++ G P +VV  D   + +               I   E++WL  
Sbjct: 242 RGYWFHTIGQRKGLGLSGG-PWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWLTV 300

Query: 314 GLF---EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
             +   E       +   KIR + D     ++R    G  +   +   G+A+GQ    Y 
Sbjct: 301 DPWLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVSSEPIQGIAAGQFATIY- 359

Query: 370 SDSNEARVLGGGIISGSK 387
            D       G   I   +
Sbjct: 360 -DPQHQLCWGSAPIQSGR 376


>gi|332176817|gb|AEE12507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 379

 Score =  329 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 160/378 (42%), Gaps = 19/378 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D R+ +  SGGVDSSV   LL   G+      +++    +       C A +D+    
Sbjct: 13  PRDSRIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDEDG-GYLDCPAEEDIELVT 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +    ++   V D  + + + V+     +   G TP P V CN+ +KF      +    
Sbjct: 72  LLARRYDLHLEVIDLHKLYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGAFEERS-GSS 130

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +ATGHY   R       +    +    D  +DQ+ FL     +Q+  L FP+G + K
Sbjct: 131 YDYIATGHYATIRKTA----EGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGHLPK 186

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRH 256
           E VR +A E  L  A + DSQ ICF+ Q  Y D ++R        GDI+    G+ +G H
Sbjct: 187 EEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLG--TQTGDIIDHETGEKIGEH 244

Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGD 313
            G   +TIGQR+GLG++ G P +VV  D   + +               I   E++WL  
Sbjct: 245 RGYWFHTIGQRKGLGLSGG-PWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWLTV 303

Query: 314 GLF---EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369
             +   E       +   KIR + D     ++R    G  +   +   G+A+GQ    Y 
Sbjct: 304 DPWLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVSSEPIQGIAAGQFATIY- 362

Query: 370 SDSNEARVLGGGIISGSK 387
            D       G   I   +
Sbjct: 363 -DPQHQLCWGSAPIRSGR 379


>gi|300121184|emb|CBK21565.2| unnamed protein product [Blastocystis hominis]
          Length = 475

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 148/294 (50%), Gaps = 7/294 (2%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + +   V V +SGG+DSSV A LL + GYDV GV ++ +++ + +  K  C    D  DA
Sbjct: 131 SKRWKTVFVGLSGGIDSSVSAYLLLKQGYDVKGVFMKNWSAEEET-GKPLCPLKDDFIDA 189

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R V + + +    +D+E+ +   V      ++++G TP P V CNR +KF          
Sbjct: 190 RNVAEFLGIPLITYDFEKEYWTNVFEVCLDAFSSGLTPNPDVLCNRYIKFDAFAHRCFHE 249

Query: 137 GADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GAD +ATGHY R+              + R +D  +DQSYFL       L  + FP+G M
Sbjct: 250 GADYIATGHYCRTNQGKPLSPFSEGIELLRGIDKSKDQSYFLSQINHSLLSRVLFPVGGM 309

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K +VR LA E+GL  A K +S  ICF+ +      +       A  G I  ++G+ +G+
Sbjct: 310 TKTAVRRLAEEVGLPNARKEESMGICFIGERNMKSFLNEYL--SASPGKIRTIDGREIGK 367

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--RESLEVHRIYLRE 307
           H+GI+ +TIGQ   +     E  +V   +  ++ +IV P    +L  H  Y+ +
Sbjct: 368 HDGILFFTIGQGVKIPN-QREKYYVCQKNAQTNELIVCPGNHPALFRHDFYVAQ 420


>gi|111225218|ref|YP_716012.1| tRNA-specific 2-thiouridylase MnmA [Frankia alni ACN14a]
 gi|122953781|sp|Q0RDH6|MNMA_FRAAA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|111152750|emb|CAJ64493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia alni ACN14a]
          Length = 352

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 143/372 (38%), Positives = 189/372 (50%), Gaps = 28/372 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S ++ +     CC  +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPESDRTGARGCCTLEDARDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  ERF   VI  F  SYAAG TP PCV CN  +KF+ +L     LG D
Sbjct: 61  ADVLGIPFYVWDLAERFETEVIDQFVESYAAGRTPNPCVRCNERIKFAAVLDRALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ R    +  DG     + R +D  +DQSY L     +QL   RFPLGD  K  
Sbjct: 121 AVVTGHHAR----LDPDGT----LRRSVDPAKDQSYVLGTLRPEQLGAARFPLGDSTKAQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR  A   GL +ADK DS DICF+  G     ++      +  G IV    GQ LG H+G
Sbjct: 173 VRREAAARGLAVADKPDSHDICFISGGDTGGWLRERIG--SRPGPIVDSRTGQTLGEHDG 230

Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQRRGL +      G P +V+ +   +S V VGP E L++ R+      W  +G
Sbjct: 231 TFAFTVGQRRGLRLGHPAPDGRPRYVLDISPVTSTVTVGPAEELDIRRLVADRAAWPHEG 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
           +          C  ++R+    V    +   D + V  +    G A+GQA V Y  D   
Sbjct: 291 VV--------TCQAQVRAHGGVVAAEAEARGDDLVVTLDTPVRGTAAGQAVVLYDGD--- 339

Query: 375 ARVLGGGIISGS 386
            RVLGGG I  +
Sbjct: 340 -RVLGGGHIRVT 350


>gi|154149044|ref|YP_001406760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter hominis ATCC BAA-381]
 gi|205811613|sp|A7I2L9|MNMA_CAMHC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|153805053|gb|ABS52060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter hominis ATCC BAA-381]
          Length = 368

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 190/393 (48%), Gaps = 54/393 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+++VA+SGGVDS+V A +LK  GY++ G  ++L+               +++   + V 
Sbjct: 1   MKILVALSGGVDSAVSAKILKDAGYEIEGCYMKLHGRDD--------YHAKNIEKVQDVG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  ++ D  + F+  V  PF  +Y  G+TP PC  CNRT+KF   L   R  G D 
Sbjct: 53  NFLEIKTHILDLCDDFKREVFEPFLQTYKVGKTPNPCALCNRTIKFGKFLDFARSKGCDK 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY +    +         +   +DL +DQSYFL     + + ++ FPLG+M K+ V
Sbjct: 113 IATGHYAKIENNL---------IKSAVDLSKDQSYFLANIEPRVIPNIVFPLGNMLKKDV 163

Query: 201 RDLAREMG-LD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           +  A     L+ I+  S+S +ICFV+   Y DV++         G + +L G+I+G+HNG
Sbjct: 164 KKFAASFPELEKISKSSESNEICFVENT-YIDVLREF-YKTETPGIVRNLQGEIVGKHNG 221

Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
            +N+T+G+RRG  V    EP +VV +D   + ++VG +  L+ +    +  N     L  
Sbjct: 222 YMNFTVGKRRGFDVFGAHEPHYVVKIDAKKNEIVVGSKADLDKNEFETQNFN---AFLNI 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ--RNDD------------------------GVYVD 351
           D ++   + +VKIR     +   ++   ND+                           + 
Sbjct: 279 DEILKMDEIYVKIRYRSAKIACKIEISLNDNLNNESLTDKNLNFENSDFLNNQDLKAKII 338

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +    GVASGQ  VFY        V+  G I+
Sbjct: 339 LKTPANGVASGQLAVFYD---KSDCVIASGFIA 368


>gi|321265027|ref|XP_003197230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptococcus gattii WM276]
 gi|317463709|gb|ADV25443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Cryptococcus gattii WM276]
          Length = 469

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 106/418 (25%), Positives = 179/418 (42%), Gaps = 51/418 (12%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------- 58
             ++ L L    +   V V MSGGVDS+    +L+     +  + ++ ++          
Sbjct: 59  PTMSELGLR---EGDHVTVGMSGGVDSATTLRILREFPIHLDVIFMRNWDPLLSESPPES 115

Query: 59  -----------------KASKRKGSCCAGQDVYDARRVCDTINVS---HYVFDYEERFRN 98
                                    C   +D  D  +V   + +      + D  + + +
Sbjct: 116 SSSPSSISLAYSSTSPINGEPNLSPCQWERDWNDVLKVATQVGIPKDSIRLVDLSKEYWS 175

Query: 99  AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158
            V  P    +  G TP P VDCNR +KF  LL V  +     LATGHY R          
Sbjct: 176 RVFEPAVGVWERGGTPNPDVDCNREIKFGALLDVLPKKDRHFLATGHYGRVAHPP---HL 232

Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
               + R  D  +DQ+Y+L   T+ QL     PLG + K  VR LA   GL  A K +S 
Sbjct: 233 GVSKLLRATDQSKDQTYYLSQMTEPQLSRAILPLGGLLKTDVRRLAEHWGLPNAKKEESM 292

Query: 219 DICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
            +CF+ ++GK+ D + +  +     G +++L+G+ L  H G+  YT+GQR  +   + +P
Sbjct: 293 GVCFIGERGKFGDFISQYTS-PPEPGYLINLSGERLAEHKGLWYYTVGQRARVANQL-KP 350

Query: 278 LFVVYL---DKNSSRVIV-GP-RESLEVHRIYLREINWLGDGLFEDAV-VDGFKCFVKIR 331
           +FV      +K +  ++V GP    L    ++  + +W+      + +  +  K  +++R
Sbjct: 351 MFVAKKGVGEKGTDILVVPGPDHPMLLCKDVHTSDFHWIHRTFPREQLDKEPEKVGIQVR 410

Query: 332 SSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQ-ACVFYTSDSNEARVLGGGIISGS 386
              +PV   +   +D   V V+F +S  GV+ GQ   V++         LG G I G+
Sbjct: 411 HRMNPVGGRIVVGNDIKNVTVEFNESIAGVSPGQVVAVWFDG-----WCLGSGFIKGT 463


>gi|156839411|ref|XP_001643397.1| hypothetical protein Kpol_479p27 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114005|gb|EDO15539.1| hypothetical protein Kpol_479p27 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 415

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 115/401 (28%), Positives = 191/401 (47%), Gaps = 39/401 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   +++AMS GVDSSV  AL      +  G+ +Q ++  +AS   G   C  +D  D
Sbjct: 23  PSKFDNIIIAMSSGVDSSVAGALFAGSYPNARGIFMQNWSKDEASLDDGKEACFEKDWKD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +V   +N+     ++E+ +   V  P    Y  G TP P ++CNR VKF  L+     
Sbjct: 83  VVKVGSHLNLPVDYINFEKDYWIDVFEPMLDVYKRGMTPNPDINCNRHVKFGKLVDHLNS 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                   L TGHY R      D    +  + +     +DQSY+L       L +L  P+
Sbjct: 143 KYGENNYWLVTGHYARCLKSTEDS---QTHLLKSYYKNKDQSYYLSQIKNGILSNLILPM 199

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G M K  VR+LA E  L  A+K+DSQ ICFV   Q GK+ + ++        +G+I+ ++
Sbjct: 200 GHMTKPEVRELAIEAELPTAEKADSQGICFVNNSQHGKFKNFLQSYLPES--KGNIITID 257

Query: 250 GQ-----ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG---PRE 296
                  I G+H G+ +YTIGQ+ GL +  G+P      FV     +++ +++       
Sbjct: 258 PVSSEKIIWGQHQGLWSYTIGQKIGLSMPQGDPRYKGTWFVSEKRNDTNEIVIVKGRDHP 317

Query: 297 SLEVHRIYLREINWLGDGLFE-----DAVVDGFKCFVKIRSSQDPVPV---FVQRNDDG- 347
           SL   ++ +++   +G    +     ++  +  +  ++ RS QDP+ V    +  N+D  
Sbjct: 318 SLFQRQLQVKDFIPIGISKEQLINLCNSSTNSNELKIQYRSLQDPIDVESIKINPNEDSS 377

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
            + +  ++S+  +  GQ C  Y +D    RVLG GIIS ++
Sbjct: 378 MITITLKESQRAMVPGQYCCMYIND----RVLGSGIISKTR 414


>gi|254578364|ref|XP_002495168.1| ZYRO0B04994p [Zygosaccharomyces rouxii]
 gi|238938058|emb|CAR26235.1| ZYRO0B04994p [Zygosaccharomyces rouxii]
          Length = 408

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 187/395 (47%), Gaps = 38/395 (9%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYD 75
             ++  V++AMS GVDSSV AAL      +  G+ +Q +  S+  +  +   C  +D  D
Sbjct: 23  PNRNDNVIIAMSSGVDSSVSAALFAEQYPNARGIYIQSWGKSQSLTDPQLEPCYERDWKD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
             RV + + +     ++E+ +   V  P   SY  G TP P + CNR VKF  L      
Sbjct: 83  VGRVAEHLGIPVDKVNFEKEYWLDVFEPMLESYNKGWTPNPDIGCNRFVKFGKLREYLDQ 142

Query: 135 QLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           Q GA+   L TGHY R      +D   +  + R     +DQSY+L       L  L FP 
Sbjct: 143 QYGANNYWLVTGHYARVLSSSYND---QPHLLRSFYPAKDQSYYLSQVDTDILGQLIFPT 199

Query: 193 GDMKKESVRDLAREMGL-DIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHL 248
           G + K  VR+LA   GL   + K DSQ ICFV   Q GK+   ++         G+IV +
Sbjct: 200 GHLTKPEVRELAVAAGLTTTSQKPDSQGICFVNNSQSGKFKHFLEHYLPNS--PGNIVTI 257

Query: 249 ----NGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG---PRE 296
               N ++ GRH G+ ++TIGQ+ GL +  G+P      ++    ++S+ +++       
Sbjct: 258 EEDGNKRVWGRHPGLWSHTIGQKVGLSMPQGDPRYAGSWYISDKLQDSNELVIVRGRDNP 317

Query: 297 SLEVHRIYLR-----EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYV 350
           +L    + +      ++N+    L ++A+  G K F++ RS QDP+ V     + D   +
Sbjct: 318 ALYQDTVTITNTFSLDLNF--RRLMKEAIEQG-KLFIQYRSLQDPIAVKDCHFDQDETVL 374

Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
               ++  +A GQ C  Y     + RVLG G IS 
Sbjct: 375 KLGSAQRAMAPGQYCCLYL----QNRVLGSGTISR 405


>gi|300741847|ref|ZP_07071868.1| tRNA methyl transferase [Rothia dentocariosa M567]
 gi|300381032|gb|EFJ77594.1| tRNA methyl transferase [Rothia dentocariosa M567]
          Length = 377

 Score =  327 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 167/371 (45%), Gaps = 42/371 (11%)

Query: 48  IGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFA 105
           +GV L L +    + R GS  CC  +D  DARRVC  + +  +V+D+ ERF+  V+  F 
Sbjct: 2   VGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARRVCAQLGIPFFVWDFSERFKEDVVDDFI 60

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
           + Y AG TP PC+ CN  +KF+ LL     LG D + TGHY R      DDG   R + R
Sbjct: 61  AEYEAGRTPNPCMRCNEKIKFAALLERAVSLGFDAVVTGHYARV--ITNDDGN--RELHR 116

Query: 166 PMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQ 224
             D  +DQSY L   T +QL    FPL     K  VR  A   G  +A K DS DICF+ 
Sbjct: 117 AADWAKDQSYVLGVLTHEQLKHAWFPLATTPSKAEVRAEAERRGFSVAKKPDSYDICFIP 176

Query: 225 QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFV 280
           +G     +          G I   +G ++G H G   +T+GQR+GL +      G+P FV
Sbjct: 177 EGDTRAWLGEHIQ--MRPGMIKDTSGNVVGEHPGAQGFTVGQRKGLALGTPAPDGKPRFV 234

Query: 281 VYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA-----------VVDGFKCFVK 329
           + +   ++ VIVG RE L +  I      W G  + E               + F    +
Sbjct: 235 LEIRPKTNEVIVGSRELLSIDEIRGIRATWAGIPVPEAEHFLAQEPKLGVRSETFDVTAQ 294

Query: 330 IRSSQDPVP--VFVQRNDDG-----------VYVDFEKSEVGVASGQACVFYTSDSNEAR 376
           +R+  DPV     ++  +D              V       GVA GQ  V Y       R
Sbjct: 295 VRAHADPVRGTAHLEWAEDTDAETPGKLRVETVVRLHDGLFGVAPGQTMVLYQG----TR 350

Query: 377 VLGGGIISGSK 387
           VLG   I+ + 
Sbjct: 351 VLGQSTIARAY 361


>gi|289523006|ref|ZP_06439860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503549|gb|EFD24713.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 351

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 35/378 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +R++ A+SGG+DSS+  +LL + G++V+G  L + +              +DV  AR+V
Sbjct: 4   KLRIITAISGGIDSSLALSLLAKQGHEVVGCFLVMSD-----------GHEEDVDRARKV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + V  Y  D  E+F++ VI+P  +SY+ G+TP PCV CN  VKF  L  +     +D
Sbjct: 53  CELLKVPFYAIDIREKFQSEVIMPLITSYSNGKTPNPCVFCNPNVKFKTLFDLLNCYNSD 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +      DD      + R  D +++QSY L+   +  L  + FPLGD+ K  
Sbjct: 113 FVATGHYAK---IYKDDLN--YHLVRGRDPKKEQSYMLYRLPKNWLSSVIFPLGDLTKAE 167

Query: 200 VRDLAREM-GLDIADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           V+  ARE+ G    D  +S D+CF+++ +   D +         EG I+ L G+ LG H 
Sbjct: 168 VKKKAREIFGNIFDDVEESADLCFLRRDETLRDFLSSRID--VKEGPILSLQGEFLGSHR 225

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           GI  YT+GQR GLG+  G P +V  ++ + + +IVG +E L+   I     +WL      
Sbjct: 226 GIGYYTVGQREGLGLPNG-PWYVSEINASENALIVGRKEDLQRRFIKCYSPHWL------ 278

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVD-FEKSEVGVASGQACVFYTSDSNEA 375
           +    G     + R    P PV +  + ++G  V   E    GVA GQ+ V Y       
Sbjct: 279 EGPEVGKVYSAQHRYKATPKPVALTDSGEEGFTVKALESPFWGVAPGQSLVLYDGRV--- 335

Query: 376 RVLGGGIISGSKRSDAVE 393
            V+GGGII+G   SDA E
Sbjct: 336 -VVGGGIIAGC--SDAKE 350


>gi|310827792|ref|YP_003960149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
 gi|308739526|gb|ADO37186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
          Length = 343

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 115/368 (31%), Positives = 177/368 (48%), Gaps = 30/368 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V+V  SGG DS+    +LK  GY+V+GVT   + +               +  A  
Sbjct: 2   KNKKVIVGFSGGADSAAAVLILKNKGYEVLGVTFDFFGNEPL------------LEKASV 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   I + H   + +  FR  VI PF S Y  G TP PCV C+  +KF  L++   +  A
Sbjct: 50  LAKQIGIQHECINRQREFREKVIKPFISEYLRGYTPNPCVRCDAGMKFRGLMAYANEKEA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197
           + +ATGHY+R     G     +  +    D  +DQSY+L+   Q+ L  L FPL     K
Sbjct: 110 EFIATGHYLRLEKRHG-----QVQIKTSEDSRKDQSYYLYTLDQEYLSRLIFPLSAFQSK 164

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           ++VR    + G+ +    +SQ ICF+  G Y   +K+    +  EG      G+ILG HN
Sbjct: 165 DAVRAFLEKEGIALPKSEESQGICFIPDGNYARFIKKETPLMP-EGRFRDRFGKILGSHN 223

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YT+GQ+RG+ V  G+   V  L    + VI+G    L   +I+L+E++++   L+ 
Sbjct: 224 GFYYYTVGQKRGVPVISGKKYVVTALRPEFNEVILGEESDLYQKKIFLKELHFIDGSLYS 283

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
                  +   K+       P  +  + D   Y++ EK+      GQ+ VFY  D    R
Sbjct: 284 G------EIQFKVCRWGYLYPGRLHLSGDRRGYLECEKAVRAPMPGQSAVFYDGD----R 333

Query: 377 VLGGGIIS 384
           +LGGGII 
Sbjct: 334 LLGGGIIE 341


>gi|255712651|ref|XP_002552608.1| KLTH0C08844p [Lachancea thermotolerans]
 gi|238933987|emb|CAR22170.1| KLTH0C08844p [Lachancea thermotolerans]
          Length = 426

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/412 (28%), Positives = 191/412 (46%), Gaps = 45/412 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +    K   +V+AMS GVDSSV AA+    G+ +  G+ +Q +   ++ +     C  +D
Sbjct: 27  MKLPSKFDNIVIAMSSGVDSSVAAAMF--SGFPNACGIYMQNWTETRSEREP---CHERD 81

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--- 129
             D ++V   +N+     ++E+ +   V  P    Y  G TP P + CNR +KF  L   
Sbjct: 82  WKDVQKVGAHLNLPVEKVNFEQDYWLDVFEPMLRDYEQGVTPNPDIGCNRFIKFGKLRAH 141

Query: 130 LSVTRQLGADVLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L  +   G   L TGHY R  +      G     + R     +DQSY+L       L  L
Sbjct: 142 LDASLGTGNYWLVTGHYSRVLQTESKALGLNSWHLLRAFYAPKDQSYYLSQVPSAALPAL 201

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDI 245
             P+G + K  VR++A ++ L  A K DSQ ICFV   Q GK    +++     A  G+I
Sbjct: 202 CLPMGVLTKPEVREMAHDLRLPTAHKPDSQGICFVANSQHGKISRFLEQYIPSHA--GEI 259

Query: 246 VHLNG-----QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG-- 293
           + L+         GRH G+ NYTIGQ+ G+ +  G+P      FV     +++ +++   
Sbjct: 260 ITLDPITGERTEWGRHTGLWNYTIGQKVGISMPQGDPRYQGAWFVADKRVDTNEIVICKG 319

Query: 294 -PRESLEVHRIYLREINWLGD-GLFEDAVVDGF---KCFVKIRSSQDPVPV------FVQ 342
               SL  +R+ L++ + LG+    ++AV +        ++ RS Q+P  V        +
Sbjct: 320 RDNPSLYKNRVVLKDFSPLGNLNDVQEAVKNNLAGGAIHIQYRSLQEPAKVSRCCWETTE 379

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
             +  + +  E+ +  +A GQ C  Y  +    R+LG G I  S   DAVE 
Sbjct: 380 AGESRLVMTLEQKQRAMAPGQYCTIYHKE----RILGSGTILAS---DAVEA 424


>gi|294102033|ref|YP_003553891.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Aminobacterium colombiense DSM 12261]
 gi|293617013|gb|ADE57167.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Aminobacterium colombiense DSM 12261]
          Length = 352

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 182/378 (48%), Gaps = 43/378 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V MSGG+DS+V + LLK+ GY+V+GV   L  + ++   +           A  +
Sbjct: 2   KKKVLVGMSGGLDSAVTSLLLKKQGYEVVGVFFALSGADESVAERQ----------AADL 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +++   V+D  E F+  V+    S+Y  G TP PC+ CN +VKF  L  +  Q    
Sbjct: 52  AQKLDIKFEVYDGRELFQKNVLTKLLSAYEKGMTPNPCILCNPSVKFKLLFFLAEQKAIP 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       + +    + R +D ++DQSY L+   ++ L  + FPLGD++KE 
Sbjct: 112 YVATGHYARIV-----EEESGPAIARGVDEKKDQSYMLYRLPREWLSSIVFPLGDLRKEE 166

Query: 200 VRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRIN--AGIALEGDIVHLNGQILGR 255
           VR++A+   L   +  K +SQD+CF  +G   D +            G I+  +G+ +G 
Sbjct: 167 VREIAKSF-LPEWVVQKKESQDVCFAPEG-LDDFLNFHLSDKKTCQPGSIMDESGKEIGT 224

Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
           HNG+  YTIGQR+GLG+  G P FVV  +   + + V  ++ L   RI      W    +
Sbjct: 225 HNGLWRYTIGQRKGLGLPGG-PWFVVSKNIVHNILRVSRKKELSSLRI------WCEAPV 277

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG------VASGQACVFYT 369
               + +G     + R    P  V ++   +   V       G      VA GQ+ V Y 
Sbjct: 278 MYRYLTEGAFYMAEHRYRTRPFSVMIESVTEQAMV-----VRGVEICPVVAPGQSLVLYN 332

Query: 370 SDSNEARVLGGGIISGSK 387
            D     V GGGII  S+
Sbjct: 333 KDV----VCGGGIIISSE 346


>gi|302344576|ref|YP_003809105.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfarculus baarsii DSM 2075]
 gi|301641189|gb|ADK86511.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfarculus baarsii DSM 2075]
          Length = 340

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 184/362 (50%), Gaps = 28/362 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+ VA+SGGVDS+V A +L+R G++VIG+TL L                + + +A     
Sbjct: 3   RIAVALSGGVDSTVAALMLRRAGHEVIGLTLAL-----------GAGPRRALTEAAEAAR 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++H V D    F  AVI P A +YAAG TP PC  CN  +K   L    +  G   L
Sbjct: 52  ALGLTHQVIDVAAAFERAVIAPAARAYAAGRTPNPCAVCNAALKIPALWRAAQAFGCQAL 111

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     R ++ R  D  + Q+YFL       L  L FPLG + K+ VR
Sbjct: 112 ATGHYARLARLGG-----RPVLARAADAAKSQAYFLARLRPALLERLIFPLGGLTKDEVR 166

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            +ARE GL  A +++SQD CF+  G + +++ R   G+   G I    G+++G+H G+  
Sbjct: 167 RVARESGLAAAQRAESQDGCFLPPGGWDELIGRR--GLTRPGPIEDAAGRVIGQHGGLHR 224

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQRRGLG+A+G P +V+ LD   + V VGP+E+L     +     W       DA+ 
Sbjct: 225 FTVGQRRGLGLALGRPTYVLSLDGARAAVRVGPKEALVTGGFWGGAAMW-NATPGADAIY 283

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           D      ++R +       V+R  D   VDF   +  VA GQ  VF+  D    RV G  
Sbjct: 284 D-----CRVRYAAQGAACRVERQGDLWRVDFNSPQGAVAPGQLAVFFLDD----RVAGSA 334

Query: 382 II 383
            I
Sbjct: 335 WI 336


>gi|86742330|ref|YP_482730.1| tRNA-specific 2-thiouridylase MnmA [Frankia sp. CcI3]
 gi|123750792|sp|Q2J6U1|MNMA_FRASC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86569192|gb|ABD13001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. CcI3]
          Length = 352

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 190/372 (51%), Gaps = 28/372 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV GV L L  S ++ +     CC  +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPESDRTGARGCCTIEDARDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  +RF   VI  F  SYAAG TP PCV CN  +KF+ +L     LG +
Sbjct: 61  ADILGIPFYVWDLADRFETDVIEEFVESYAAGRTPNPCVRCNERIKFAAVLDKALALGFE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ R    +  DG     + R +D ++DQSY L     +QL   RFPLGD  K  
Sbjct: 121 AVVTGHHAR----LDPDGT----LRRSVDPDKDQSYVLGTLRPEQLAAARFPLGDSTKAQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR  A E  L +ADK DS DICF+  G     ++         G ++    GQ LG H+G
Sbjct: 173 VRVEAAERRLAVADKPDSHDICFISHGDTGGWLRERLG--PRPGPVIDATTGQTLGHHDG 230

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQRRGL +      G P +V+ +   +S V VGP E+L+V R+      W  +G
Sbjct: 231 AYAFTVGQRRGLKLGRPAADGRPRYVLDISPVTSTVTVGPAEALDVRRLVADRAVWPHEG 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
                      C  ++R+    VP   Q  D+ + V       G A+GQA V Y  D   
Sbjct: 291 AVS--------CLAQVRAHGGVVPAVAQARDEELVVTLTTPVRGTAAGQAVVLYDGD--- 339

Query: 375 ARVLGGGIISGS 386
            RVLGGG I  +
Sbjct: 340 -RVLGGGHIRTT 350


>gi|94986647|ref|YP_594580.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Lawsonia intracellularis PHE/MN1-00]
 gi|205816877|sp|Q1MRW7|MNMA_LAWIP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94730896|emb|CAJ54259.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 352

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 29/371 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M V VA+SGG DS    A L+     + V  +            R         V   + 
Sbjct: 1   MNVAVAVSGGTDSLYTLATLREAFGNHHVFALH----------ARFKEQITNDPVPALKE 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  +NV  +V D  + F   +I PF  +YA G+TP PCV CN  VKF  L    ++LGA
Sbjct: 51  QCHNLNVPLHVVDLHKEFNELIIRPFIKAYADGKTPNPCVHCNAKVKFGLLQKKAQELGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +ATGHY+       D     + +    D  +DQSYFL  T ++QL    FPLG ++K 
Sbjct: 111 NQIATGHYVSLI----DHDLYGKALKCGADSTKDQSYFLALTPREQLQTAIFPLGTLRKT 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR+  ++MGL++    +SQ+ICFV    Y   ++  +  +  EG +V L+G ++G+H G
Sbjct: 167 EVRERLQKMGLEVPLPKESQEICFVPNDDYRKFLQSSDVDLLSEGRMVMLDGTLVGKHKG 226

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQRRGLGV+  EPL+V + + + + +++G  + + V     ++IN+L       
Sbjct: 227 LWKYTEGQRRGLGVSWSEPLYVAHKNHSCNELVLGTAKDILVDTCTAQDINFLVPQDNWP 286

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSDSN 373
                 + FV+ R  Q  VP  +Q   +      + + F   ++  A GQ    +     
Sbjct: 287 K-----ELFVRTRYRQQAVPADIQFVTNTSSSKKITIHFHSPQLPAAPGQLAAIFD---K 338

Query: 374 EARVLGGGIIS 384
              VL GG+I+
Sbjct: 339 SGYVLAGGLIT 349


>gi|255086163|ref|XP_002509048.1| predicted protein [Micromonas sp. RCC299]
 gi|226524326|gb|ACO70306.1| predicted protein [Micromonas sp. RCC299]
          Length = 478

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 182/450 (40%), Gaps = 81/450 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++V V +SGGVDSSV   LLK  G+D +   LQ++          +C    D+  AR 
Sbjct: 14  RKLKVAVLLSGGVDSSVALTLLKAAGHDCVAFYLQIWFVEDFRNTWDACPWEDDLNVARG 73

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQ 135
           VC+ ++V   V     ++ + V+       + G TP P + CN  VKF      L   R 
Sbjct: 74  VCEHLDVPLEVVPLTNQYWDLVVKHSIEQISRGRTPNPDMLCNSRVKFGAFTDWLETNRA 133

Query: 136 LGADVLATGHYIR--------SRLYVGDD---GKRRRIMCR---PMDLERDQSYFLFATT 181
                +A+GHY          +    GDD   G  RR  CR     D  +DQ+YFL   +
Sbjct: 134 GEFHRVASGHYAAMDRVQGILADTLHGDDGMNGTSRRHPCRLIMSGDARKDQTYFLAHLS 193

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL  L FP+G + K  +R++AR  GL  A++ DSQ ICF+ + K+ + V         
Sbjct: 194 QRQLAALTFPIGGLPKTQIREIARSAGLPNAERKDSQGICFLGKVKFSEFVAEHLGE--R 251

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---S 297
            G IV L  G  LG H+G   +TIGQR GLG++ G P +V   D   + V V        
Sbjct: 252 PGAIVELETGTRLGTHSGFWFHTIGQRSGLGLSGG-PWYVAAKDVPGNVVYVTRDYYSVD 310

Query: 298 LEVHRIYLREINWLGDGLF----------------------------------------- 316
            E +   + E +WL                                              
Sbjct: 311 KERNTFRVGEFSWLSGTAPASDADGYALGHGGEGARLAWACDGDGCDDDGATSRETTSSR 370

Query: 317 ---------EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQAC 365
                    E       + + K+R  ++     ++   + D   V  E  + G+A+GQ  
Sbjct: 371 GVNGGASASEVDATKTSELYCKVRHGENRYRCTLRFDIDGDAGTVVIEADDQGLAAGQFA 430

Query: 366 VFYTSDSNEARVLGGGII-SGSKRSDAVEE 394
           VFY         LG G+I     R D  E 
Sbjct: 431 VFYD----RRVCLGCGVILEQPVREDLAER 456


>gi|75761642|ref|ZP_00741591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74490863|gb|EAO54130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 269

 Score =  325 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            CN+ +KF   L     LGAD +ATGHY R     G+       M R +D  +DQ+YFL 
Sbjct: 1   MCNKEIKFKAFLEHAIALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLN 55

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
             +Q+QL    FPLG++KK  +R++A+E GL  A K DS  ICF+ +  + D +      
Sbjct: 56  QLSQEQLSKTMFPLGELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP- 114

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GP 294
            A  G +  L+G++ G+H+G++ YTIGQR GLG+   G+P F V  +   + + V     
Sbjct: 115 -AQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFH 173

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353
            E L    +    + W+ + + E      FKC  K R  Q+   V VQ  +++ V +  +
Sbjct: 174 NELLYGDEVIATNVGWVSNKVKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCD 229

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           +    +  GQA VFY  D      LGG  I    RS    + L
Sbjct: 230 EPIRAITPGQAVVFYDGD----ECLGGATIDEVYRSGKKLDYL 268


>gi|298498767|ref|ZP_07008574.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MAK 757]
 gi|297543100|gb|EFH79150.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MAK 757]
          Length = 263

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 23/273 (8%)

Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           + +KF   L    + L AD +A GHY+R           +  M R +D  +DQSYFL+  
Sbjct: 1   KEIKFKAFLEFADEVLDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTL 57

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           + +Q+    FP+G+++K  VR +A E GL  A K DS  ICF+ + K+ D + R     A
Sbjct: 58  SHEQVARTLFPVGELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--A 115

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV--- 292
             G I    G+++G H G++ +T+GQR+GL +        +P +V   D   + +I    
Sbjct: 116 QPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQG 175

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVD 351
                L+ H +   +++W+        + +  +C VK R  Q  +    +  +DD + V 
Sbjct: 176 ADHPLLKSHGLVAAQLHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVM 231

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           F++ +V V  GQ+ VFY  +      LGGGII 
Sbjct: 232 FDEPQVAVTPGQSAVFYQGEI----CLGGGIIE 260


>gi|312194884|ref|YP_004014945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EuI1c]
 gi|311226220|gb|ADP79075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Frankia sp. EuI1c]
          Length = 359

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 146/379 (38%), Positives = 197/379 (51%), Gaps = 28/379 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G++V GV L L  S  A +     CC  +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHEVTGVHLALSRSPDAERTGARGCCTVEDARDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D  +RF   VI  F ++YAAGETP PCV CN  +KFS +L     LG D
Sbjct: 61  ADVLGIPFYVWDLADRFETDVIADFVAAYAAGETPNPCVRCNERIKFSAVLGRALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGH+ R    +  DG    ++ R +D  +DQSY L     +QL    FPLGD  K  
Sbjct: 121 AVVTGHHAR----LSADG----VLRRSVDPAKDQSYVLGTLRPEQLRRAIFPLGDSTKAQ 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR  A   GL +ADK DS DICFV  G     ++      A  G IV    G+ LG H+G
Sbjct: 173 VRAEAAARGLGVADKPDSHDICFVPSGDTGAWLRDRLG--AKPGPIVDAATGETLGAHDG 230

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              +T+GQRRGL +      G P +V+ +   +S V VGP ESL+V R+      W    
Sbjct: 231 TFAFTVGQRRGLRLGRPAPDGRPRYVLDISPVTSTVTVGPAESLDVWRLVADAGVWAAPE 290

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374
             +       +C  ++R+  D VP   + +   + ++      G A+GQA V Y  D   
Sbjct: 291 GVD------VECLAQVRAHGDAVPAVARADGGELSIELRAPVRGTAAGQAVVLYDGD--- 341

Query: 375 ARVLGGGII--SGSKRSDA 391
            RVLGGG I  + ++R+ A
Sbjct: 342 -RVLGGGHILRTMAERALA 359


>gi|330995326|ref|ZP_08319236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329575821|gb|EGG57345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 352

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 159/367 (43%), Gaps = 21/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ V +SGGVDS+V    +   GY      +++    +      SC A +D+  +    
Sbjct: 1   MRIAVLISGGVDSAVAVHRICEMGYKPDLFYIKIGMEGEGL----SCTAEEDIELSTATA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V D ++++   V+         G TP P V CN+ +KF            D 
Sbjct: 57  RRYGLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFGCF-EQEVGHRYDK 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY   R   G     +  +    D  +DQ+ FL      Q+  L FP+GD+ KE V
Sbjct: 116 IATGHYATVRERDG-----KIWLGTARDPVKDQTDFLAQIDSLQVAKLMFPVGDLMKEEV 170

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259
           R +A    L  A + DSQ ICF+ Q  Y D V+R       EG +V +  G+ +G H G 
Sbjct: 171 RRIAETQRLPSAKRRDSQGICFLGQIDYNDFVRRFLGE--REGAVVEIETGRRIGTHKGY 228

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGLF 316
             +TIGQR+GLG+  G P FVV  D   + + V           H   L++ +++    +
Sbjct: 229 WFHTIGQRKGLGLGGG-PWFVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFITGNPW 287

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            DA         K R     +   + R   G  ++  +   G+A GQ  V Y  D+    
Sbjct: 288 GDAP--EVDVTFKTRHQPHFMKGRLYRAGHGYRLESPERIQGIAPGQFGVVY--DAAAEI 343

Query: 377 VLGGGII 383
            +G G I
Sbjct: 344 CIGSGEI 350


>gi|66805429|ref|XP_636447.1| tRNA -methyltransferase [Dictyostelium discoideum AX4]
 gi|74852396|sp|Q54I63|MTU1_DICDI RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|60464825|gb|EAL62944.1| tRNA -methyltransferase [Dictyostelium discoideum AX4]
          Length = 451

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 178/390 (45%), Gaps = 29/390 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  +V + MSGGVDS++ A LLK  G+DV GV ++ ++  + +   G C   +D  DA 
Sbjct: 62  PKKPKVCIGMSGGVDSTITAKLLKLQGFDVTGVFIKSWDEVEDT---GRCQGERDWKDAL 118

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136
              + +++  Y  D+ + + N V V F   Y  G TP P V CNR +KF       ++  
Sbjct: 119 EASNFLDIPMYKADFVKDYWNRVFVDFLKDYKNGLTPNPDVWCNREIKFDLFFDFAKENF 178

Query: 137 GADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           G D +ATGHY         VGD+      + R +D  +DQ++FL  T  ++L    FP+G
Sbjct: 179 GVDYIATGHYSNLYYGEENVGDNNNNNLQLHRAIDKNKDQTFFLCMTKGERLKQAIFPIG 238

Query: 194 DMKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
              KE++   A+ +     I  K  S+ ICF+ +    D + +        GD   ++  
Sbjct: 239 GFTKENIVSFAKTIPNFSKITSKKSSRGICFIGKRPLPDFLSQYMTL--KPGDFFDISTN 296

Query: 252 IL---GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---- 304
                 +H G + YT+GQ+  +  ++ E  F+V  D   + V V P    +   +Y    
Sbjct: 297 SFIKGKKHKGSVCYTMGQKANI-DSLSERYFIVRSDIERNIVYVCPESQFDQFSLYYEFN 355

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----DG---VYVDFEKSE 356
               NW+ +   E     GFK     R   D V + ++        DG     V+ ++  
Sbjct: 356 THSFNWINEIPTEVKSEQGFKGRGICRHRGDVVNLTIKDTGKTSPIDGSVIYSVNLDQPL 415

Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGS 386
             VASGQ    +  D N  R  GGG+I+ S
Sbjct: 416 RSVASGQILCLF--DRNTDRCFGGGVINSS 443


>gi|332181403|gb|AEE17091.1| tRNA-specific 2-thiouridylase mnmA [Treponema brennaborense DSM
           12168]
          Length = 452

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 137/459 (29%), Positives = 197/459 (42%), Gaps = 99/459 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-----KASKRKGSC 67
           DL        V V MSGGVDS++VA LLK  G +VIGVT+  +N        A   + SC
Sbjct: 5   DLPLPEPGTTVAVGMSGGVDSTLVAILLKERGCNVIGVTMSSWNDDMPLPHSADGVRSSC 64

Query: 68  CAGQ---DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D+      C   ++ ++V D  E +R  V+  F + Y AG TP PC+ CN  V
Sbjct: 65  YGPDEQVDIAQCESFCKEHDIEYHVIDVRETYRKEVLDYFKAEYRAGRTPNPCIRCNPRV 124

Query: 125 KFSDLLSVTRQLG--ADVLATGHYIR------------------------------SRLY 152
           KF  LL     LG   D   TGHY R                              +   
Sbjct: 125 KFGALLEGITALGIRFDYFCTGHYARLVRPETSVADLYREHVVPGFAAAPGFDAVPAEFR 184

Query: 153 VGDDG-------------------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             + G                   +R  ++    D  +DQ+YFL       L  +RFPL 
Sbjct: 185 SAEAGVEPPSTVSAVPDTSALPVSERPVMIAYASDSTKDQTYFLCRVPSHVLEKVRFPLA 244

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              K+ V  +A+E  L  A +S+SQD  FV +  YFDV+   +   ++ GDIV+L+G+++
Sbjct: 245 GFTKKEVFAMAQERRLAAASRSESQD--FVPEA-YFDVI--FSDKPSVPGDIVNLDGKVI 299

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           GRH GI +YT+GQRRGLGV+   PL+V  +D   +RV++   + L    +   +  W G+
Sbjct: 300 GRHRGIEHYTVGQRRGLGVSSTRPLYVHSIDAVHNRVVLAENDDLLCGALLADDWVWAGN 359

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------------NDDG-------------- 347
            +        F   VKIR +  PV   V+               D               
Sbjct: 360 YV----PALPFTGEVKIRLASKPVEAVVEPYAGVHTTACAAGTGDSDAARDSDAAREPSG 415

Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
              + F+  +  VA GQ+ V Y +      ++GGGIIS 
Sbjct: 416 VFKITFKNPQRAVAPGQSAVVYLN----GVIVGGGIISR 450


>gi|296128959|ref|YP_003636209.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Cellulomonas flavigena DSM 20109]
 gi|296020774|gb|ADG74010.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Cellulomonas flavigena DSM 20109]
          Length = 372

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 142/378 (37%), Positives = 197/378 (52%), Gaps = 26/378 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV + L  +    +     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHMALSRTPAQERTGSRGCCSIEDASDARRA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + +YV+D  ERF   V+  F + YAAG TP PCV CN  VKF+ LL     LG D
Sbjct: 61  ADVLGIPYYVWDMSERFERTVVADFLAEYAAGRTPNPCVRCNEHVKFAALLDKALALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198
            + TGHY R     G      R + R +D  +DQSY L     ++L    FPLGD+  K 
Sbjct: 121 AVCTGHYARVVERAGS-----RELHRAVDPAKDQSYVLAVMGPERLARAVFPLGDVASKS 175

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            VR  A   GL +A K DS DICFV  G     ++R        G++V  +GQ++G H+G
Sbjct: 176 EVRAEAVARGLSVAAKPDSYDICFVADGDTQGFLRRALGE--QPGEVVDESGQVVGTHDG 233

Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
              YT+GQRRGL +      G P +V+ ++    RV+VGP ESL+V ++      W GD 
Sbjct: 234 AYAYTVGQRRGLALGRPAPDGRPRYVLAVEPVQRRVVVGPAESLDVAQVRGDAAVWFGDV 293

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE---KSEVGVASGQACVFYTSD 371
                   G  C V++R+    VP  V   D G  V  +       GVA+GQ+ V Y   
Sbjct: 294 -----PAAGATCTVQVRAHGTDVPARVLAADAG-TVTVDVSGAGLRGVAAGQSLVLYDG- 346

Query: 372 SNEARVLGGGIISGSKRS 389
              +RV+G   ++ ++ +
Sbjct: 347 ---SRVVGQATVAATRSA 361


>gi|301629819|ref|XP_002944031.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial
           [Xenopus (Silurana) tropicalis]
          Length = 292

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 96/300 (32%), Positives = 136/300 (45%), Gaps = 30/300 (10%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           F   Y AG TP P V CN  +KF   L     LGA+ +ATGHY R R            +
Sbjct: 1   FLREYQAGRTPNPDVLCNAEIKFKAFLDHAFTLGAEKIATGHYARVRQNAD---TGLFEL 57

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
            + +D  +DQSYFL    Q QL    FP+G+++K  VR +A E+GL  A K DS  ICF+
Sbjct: 58  LKGLDPAKDQSYFLHRLNQAQLAKTLFPVGELRKTEVRRIAEEIGLPNARKKDSTGICFI 117

Query: 224 QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM--------- 274
            +  +   + R  +     G I+   G+ LGRH G+  YT+GQR+GLG+           
Sbjct: 118 GERPFRAFLNRYISKE--PGPILDDRGRKLGRHVGLSFYTLGQRQGLGIGGVKEQGAARG 175

Query: 275 ---GEPLFVVYL--DKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFV 328
                P FV     DKN  RV+ G     L  H +  ++ +W                  
Sbjct: 176 AGEHAPWFVARKELDKNVLRVVQGHDHPWLLSHHLMAQDTSWCAGHAPAPGA-----YAA 230

Query: 329 KIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           K R  Q      +Q   D G  + F +++  V  GQ+ V Y  +      LGGG+I+ ++
Sbjct: 231 KTRYRQQDAVCQLQAVPDGGFALQFPEAQWAVTPGQSAVLYDGEV----CLGGGVIATAQ 286


>gi|227498170|ref|ZP_03928341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832420|gb|EEH64803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinomyces urogenitalis DSM 15434]
          Length = 399

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 133/402 (33%), Positives = 192/402 (47%), Gaps = 41/402 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G++V+GV + L   R  +      CC+ +D  DAR  
Sbjct: 1   MRVLAALSGGVDSAVAAARAVEAGHEVVGVHMALTRHRAQTRSGSRGCCSIEDSADARWA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +  YV+D  E F + V+  F S Y AG TP PCV CN  VKF  LL     +G D
Sbjct: 61  AEILGIPFYVWDLSEEFEDRVVADFLSEYRAGRTPNPCVRCNERVKFDALLERGLAMGFD 120

Query: 140 VLATGHYIRSR--LYVGDDGKRR-RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +ATGHY R       G  G      + R  D  +DQSY L  + ++ L    FPLGD  
Sbjct: 121 AVATGHYARLTGGASSGRPGDTHDLCLSRAADAAKDQSYVLAVSGREGLSRALFPLGDAP 180

Query: 197 -KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            K +VR  A E GL +ADK DS DICFV  G     ++R       EG +V  +G++LG 
Sbjct: 181 SKAAVRAEAAERGLPVADKPDSYDICFVADGDTRGFLQRSLG--TQEGTLVSPDGEVLGT 238

Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           H G   +T+GQR+GLG+      G+P +V+     ++ V+VGPRE L  H I    +  L
Sbjct: 239 HEGYFGFTVGQRKGLGLTRPAPDGQPRYVIATRPATNEVVVGPRELLSRHEIEADALVLL 298

Query: 312 GDGL---------------------------FEDAVVDGFKCFVKIRSSQDPVPV--FVQ 342
            D                               +A +      V++R+   PV     V 
Sbjct: 299 ADPTALGPATLRTQSPGGQGGPESPGEAAPGVTEAGMGWAGVAVQVRAHGRPVSADVTVD 358

Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            +   ++    +   G+A+GQ+ V Y   ++  +VL    ++
Sbjct: 359 PSSTTLHARLHEPLRGLAAGQSVVVYGG-ADGEQVLAQATVA 399


>gi|319900441|ref|YP_004160169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319415472|gb|ADV42583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 353

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 108/342 (31%), Positives = 159/342 (46%), Gaps = 23/342 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
                V++ MSGG DSSV A  L+  GY+V GVT + Y +   ++          + DAR
Sbjct: 2   KSKEHVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEADGGTEY---------LEDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR  VI  F   Y AG TP+PC  CN  +K++ L  +  + G
Sbjct: 53  ALAARLGIGHITYDAREAFRERVIRYFIDEYLAGRTPVPCTVCNNELKWALLAKIADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L  G     +  +    D ++DQS+FL+   Q  L  +  P+GD+ K
Sbjct: 113 IYWVSTGHYVRKVLQEG-----KYYIAPAADRDKDQSFFLWGLKQDILRRMLLPMGDIIK 167

Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA--GIALEGDIVHLNGQILG 254
              R  A   G   +A K DS  +CF     Y   +K       +  +G  V   G  LG
Sbjct: 168 SEARAYAAARGFRQVATKKDSIGVCFCPL-DYRSFLKCEAGVRKLPDKGKFVDEKGNFLG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ + + +FV  +    + VI+ P  SL    ++L E N     
Sbjct: 227 WHEGYPFYTIGQRRGLGLQLNKAVFVKEISVEKNEVILAPLASLYKREMWLEEWNL---- 282

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355
                V+D  +  VKIR  +      V    DG ++V   + 
Sbjct: 283 AEYSRVLDAEEVIVKIRYRKQANRCKVSLTADGLLHVCLAEP 324


>gi|242279051|ref|YP_002991180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121945|gb|ACS79641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio salexigens DSM 2638]
          Length = 360

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 168/362 (46%), Gaps = 21/362 (5%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +A+SGG DS +   LLK  G D++ V              G   A   V    + C 
Sbjct: 18  KVAMAVSGGADSLLSMVLLKESGADIVAVH---------GCFLGKEKAEVAVAGLEKRCA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            ++VS +VFD    F   V+ PF   Y  G TP PC  CN  +KF  L    ++LG D+L
Sbjct: 69  ELDVSLHVFDLTAEFDRLVVEPFVQEYLRGNTPNPCALCNPEIKFGVLYKAAQELGCDLL 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY+R    + +D +  R++ R  D+ +DQSYFL    +  + +  FPLG   K+   
Sbjct: 129 GTGHYVR----IAEDARYGRVLARGADMGKDQSYFLSLVPRDSVLNAIFPLGGHSKDQTY 184

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
               + G++I   S+SQ+ICFV    Y   +      +   G  V  +G  +G+HNG+  
Sbjct: 185 AELDKRGVEIPLPSESQEICFVPDDDYRQFLIDRKVKLPGPGIAVLSDGTKVGKHNGLWR 244

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT GQRRGLG++   PL+V+  D   + +IVG  + LE         N+L D        
Sbjct: 245 YTQGQRRGLGISWKAPLYVLDKDMKRNLLIVGTSDELEAGGCIADSFNFLIDFERWPE-- 302

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
                +++ R  Q   P    +    +  DF +       GQ    Y   + E  VLGGG
Sbjct: 303 ---TVYIQTRYRQRSKPARAVQVGSSIKFDFIEPHSRPTPGQIVAVY---TEEGAVLGGG 356

Query: 382 II 383
           II
Sbjct: 357 II 358


>gi|328864882|gb|EGG13268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyostelium fasciculatum]
          Length = 580

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 99/404 (24%), Positives = 167/404 (41%), Gaps = 42/404 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +   + V +SGGVDS++V+ LL +  + V  V ++ ++ +      G C   +D  DA 
Sbjct: 173 NRKPTICVGLSGGVDSAIVSYLLGKQDFKVKCVYIKSWDEKD---ELGYCSGERDYKDAC 229

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +  ++ V+ +  D+ + + N V   F   Y  G TP P V CNR +KF       +QLG
Sbjct: 230 DIAQSLGVTLFHRDFTKEYWNRVFHSFLKDYQQGYTPNPDVFCNREIKFDVFTEHAKQLG 289

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRI--------MCRPMDLERDQSYFLFATTQQQLCDLR 189
           AD++ATGHY            + +         + R  D  +DQSYFL  T   +L +  
Sbjct: 290 ADMIATGHYATILHNQQQPQHQHQQQQQNNNIILKRGKDRNKDQSYFLCMTEGHKLAEAI 349

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSD-SQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
           FPLG+  K  V  +A ++G +       S+ ICFV +    + +++    +   G  V  
Sbjct: 350 FPLGEYLKNDVIAMANKIGFNNITSKRSSRGICFVGKRPLPEFLEQYIPLV--RGAFVDD 407

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIY 304
            G I+G H G + YTIGQ+  +     E  F+  +D  +++V V P     + L  +   
Sbjct: 408 KGSIIGEHKGAVCYTIGQKANIS-GRQERYFIYKVDVINNQVHVCPESVSDQYLLSNACV 466

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----------------- 347
           +  +NW+             +   +IR   D     ++  +                   
Sbjct: 467 ISHLNWINGTPLALQSGLPIRAMCQIRYRADLTECLIEPINHNQQHSLQQQQQQQQQQSQ 526

Query: 348 ---VYVDFEKSE-VGVASGQACVFYTSDSNEARVLGGGIISGSK 387
                V F   +      GQ    Y  +      LGGG++   +
Sbjct: 527 QQQYRVTFVGKQERAATPGQIVCIY--ELESDICLGGGVVQHVE 568


>gi|228470778|ref|ZP_04055626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas uenonis 60-3]
 gi|228307451|gb|EEK16456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas uenonis 60-3]
          Length = 376

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 158/380 (41%), Gaps = 23/380 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D R+ +  SGGVDSSV   LL   G+      +++    +       C A +D+    
Sbjct: 10  PRDSRIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDEDGSFL-DCPAEEDIELVT 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +    ++   + D  + + + V+     +   G TP P V CN+ +KF          G
Sbjct: 69  LLARRYDLHLEIVDLHQVYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGAFEER---CG 125

Query: 138 A--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A  D +ATGHY   R            +    D  +DQ+ FL     +Q+  L FP+G +
Sbjct: 126 ASYDYIATGHYATIRQT----EDGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGHL 181

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254
            KE VR +A E  L  A + DSQ ICF+ Q  Y D ++R        GDI+    G+ +G
Sbjct: 182 PKEEVRRIALEAHLVNAQRKDSQGICFLGQIDYNDFIERYLG--TQTGDIIDHETGEKIG 239

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWL 311
            H G   +TIGQR+GLG++ G P +VV  D   + +               I   E++WL
Sbjct: 240 EHRGYWFHTIGQRKGLGLSGG-PWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWL 298

Query: 312 GDGLF---EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367
               +   +       +   KIR + D     ++     G  +       G+A+GQ    
Sbjct: 299 TTDPWLWTKTPSDSPLEVTFKIRHTPDFTAGRLEHLPSGGYQLVSSVPIQGIAAGQFATI 358

Query: 368 YTSDSNEARVLGGGIISGSK 387
           Y  D       G   I   +
Sbjct: 359 Y--DPQRQLCWGSAPIRSGR 376


>gi|328350542|emb|CCA36942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pichia pastoris CBS 7435]
          Length = 397

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 107/393 (27%), Positives = 171/393 (43%), Gaps = 43/393 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  R+VVAMS GVDSSV AAL ++     +V G+ +  + S          C   D  D 
Sbjct: 21  EKDRIVVAMSSGVDSSVTAALCRKIFPRSEVEGIFMANWTSDSN-------CTDSDWNDV 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-- 134
           ++ C  I +     D+E+ +   V  P    Y  G+TP P V CNR VKF  ++      
Sbjct: 74  KKTCSHIGIPCRRVDFEKEYWTEVFEPMLEQYRIGKTPNPDVGCNRYVKFGKMIEHLTNT 133

Query: 135 --QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +     L TGHY R    + D   R + + R   L +DQSY+L       L  +  P+
Sbjct: 134 LGEQQPWWLVTGHYAR---VLEDITSREKHLLRSDYLPKDQSYYLSRVKDSSLERMFLPI 190

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ--QGKYFDVVKRINAGIALEGDIVHLNG 250
           G   K  +R+LA++  L  + K DSQ +CFV   +G +   +          GDI+ ++ 
Sbjct: 191 GHFSKPEIRNLAKKWKLPTSSKPDSQGLCFVSQKEGHFKKFLDEFLP--PEPGDIITIDE 248

Query: 251 Q----ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESL 298
                  G H G+ + TIGQR G+ +  G+       FV      ++ +++       +L
Sbjct: 249 NGFKHKWGSHQGLWHATIGQRSGVSMPQGDRNYKGAWFVSEKRPKTNEIVIVKGSNNPAL 308

Query: 299 EVHRIYLREINWLGDGLFED-AVVDGFKCFVKIRSSQDPVPVF------VQRNDDGVYVD 351
               +      WLG    ++   +   +  V+ RS QDP+ +          N+  +   
Sbjct: 309 YKDTVETSNWLWLGPFNADNLKNISINELIVQYRSLQDPIGLLNWKFFSQSINNQRMTFR 368

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            ++    ++ GQ  V Y  D    RVLG G+I+
Sbjct: 369 LKQKYRAISPGQIAVLYHRD----RVLGCGMIT 397


>gi|254566067|ref|XP_002490144.1| tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the
           wobble base of mitochondrial tRNA [Pichia pastoris
           GS115]
 gi|238029940|emb|CAY67863.1| tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the
           wobble base of mitochondrial tRNA [Pichia pastoris
           GS115]
          Length = 398

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 107/393 (27%), Positives = 171/393 (43%), Gaps = 43/393 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  R+VVAMS GVDSSV AAL ++     +V G+ +  + S          C   D  D 
Sbjct: 22  EKDRIVVAMSSGVDSSVTAALCRKIFPRSEVEGIFMANWTSDSN-------CTDSDWNDV 74

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-- 134
           ++ C  I +     D+E+ +   V  P    Y  G+TP P V CNR VKF  ++      
Sbjct: 75  KKTCSHIGIPCRRVDFEKEYWTEVFEPMLEQYRIGKTPNPDVGCNRYVKFGKMIEHLTNT 134

Query: 135 --QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +     L TGHY R    + D   R + + R   L +DQSY+L       L  +  P+
Sbjct: 135 LGEQQPWWLVTGHYAR---VLEDITSREKHLLRSDYLPKDQSYYLSRVKDSSLERMFLPI 191

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ--QGKYFDVVKRINAGIALEGDIVHLNG 250
           G   K  +R+LA++  L  + K DSQ +CFV   +G +   +          GDI+ ++ 
Sbjct: 192 GHFSKPEIRNLAKKWKLPTSSKPDSQGLCFVSQKEGHFKKFLDEFLP--PEPGDIITIDE 249

Query: 251 Q----ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESL 298
                  G H G+ + TIGQR G+ +  G+       FV      ++ +++       +L
Sbjct: 250 NGFKHKWGSHQGLWHATIGQRSGVSMPQGDRNYKGAWFVSEKRPKTNEIVIVKGSNNPAL 309

Query: 299 EVHRIYLREINWLGDGLFED-AVVDGFKCFVKIRSSQDPVPVF------VQRNDDGVYVD 351
               +      WLG    ++   +   +  V+ RS QDP+ +          N+  +   
Sbjct: 310 YKDTVETSNWLWLGPFNADNLKNISINELIVQYRSLQDPIGLLNWKFFSQSINNQRMTFR 369

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            ++    ++ GQ  V Y  D    RVLG G+I+
Sbjct: 370 LKQKYRAISPGQIAVLYHRD----RVLGCGMIT 398


>gi|284044473|ref|YP_003394813.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Conexibacter woesei DSM 14684]
 gi|283948694|gb|ADB51438.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Conexibacter woesei DSM 14684]
          Length = 519

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 133/392 (33%), Positives = 186/392 (47%), Gaps = 33/392 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +VAMSGGVDS+V A L  R+  DV+ VTL+L+ + + +  + SCC+ Q V  AR +  
Sbjct: 144 RTLVAMSGGVDSAVAALLAARESGDVVAVTLELW-ADEQNDGERSCCSAQAVRFARALAH 202

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   D  E F   V+ PF   +AAG TP PCV CN  V+   +L +  +LGA  L
Sbjct: 203 RMGLPHLTLDLREEFSAGVVTPFLDDHAAGLTPNPCVRCNGHVRLDAMLELADRLGAATL 262

Query: 142 ATGHYIRSRL------------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ATGHY R               +     +   ++    D  +DQ+Y L A     L  LR
Sbjct: 263 ATGHYARVEPAEPVEPAAAPAEHAAAPAEHGPLLRAAADAWKDQTYMLAALAPASLARLR 322

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FPLGD+ K  VR LA E  L +A K++SQD+CF+      + + R        G++V   
Sbjct: 323 FPLGDLTKPQVRALAAEAELPVASKAESQDLCFLAGTSRSEFLARHAGIAQRPGEVVDAA 382

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G ++G H G   +T+GQRRGLGVA  EPL+V+  D  S+RV+ G R  L    + +R   
Sbjct: 383 GDVIGAHTGHHGFTVGQRRGLGVAAEEPLYVLRTDPASNRVVAGTRAQLATTSVPVRGAR 442

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----DGVYVDFEKSEVGVASGQA 364
              DG   D         VK+R    P+P  V           + +  E+   G A GQ 
Sbjct: 443 LHRDGARVDR--------VKLRYRAKPLPARVVGAPAAGTHRRLEIALEEPVDGAAPGQL 494

Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
                 D     V+G   I    R  A   + 
Sbjct: 495 ACLMDGDV----VIGWATID---RPAATAPAQ 519


>gi|325295428|ref|YP_004281942.1| tRNA-specific 2-thiouridylase mnmA [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065876|gb|ADY73883.1| tRNA-specific 2-thiouridylase mnmA [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 350

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 30/367 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++  SGG+DS   A LLK   + V  V  ++       K             A    
Sbjct: 2   KKVILGFSGGIDSFYTAYLLKEQRFKVFPVYFKVLPDISTEK-------------AEESA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D  + FR  VI  F   Y  G TP PC  CN+ +K   L  ++++L AD 
Sbjct: 49  SILGLGLTVIDLSDEFRKKVINHFIEYYKKGLTPNPCAICNKDIKLKYLYELSKELKADF 108

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ++TGHY +   +   D  ++ ++ R  D  ++QSYFL    +     L  PLG+  KE V
Sbjct: 109 ISTGHYAKVSYF---DKWKKNLILRGKDKRKEQSYFLSLVEKFVFQKLLLPLGNFTKEEV 165

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
              A+E+G      S+SQDICF++ G Y + +++        G  V ++G  +G+H G  
Sbjct: 166 VLRAQELGFPFE--SESQDICFIE-GHYVNFLEKFIK--PKPGVFVLIDGTPVGKHKGYY 220

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            YT+GQRRGLG++  +PL+V+ +D   +RVIVG ++ ++   IY++ INW  D    + V
Sbjct: 221 KYTVGQRRGLGISYTKPLYVISIDAKRNRVIVGEKKEIQKDIIYVKNINWHLD---YEVV 277

Query: 321 VDGFKCFVKIRSSQDPVPV-FVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVL 378
                  V+IR    PV V  +    +G++ V         A GQ C FY+++     +L
Sbjct: 278 KKFDTIQVQIRYRSKPVEVEKIDYLKNGIFCVKLAAKVDAPAPGQVCAFYSNE----LLL 333

Query: 379 GGGIISG 385
           GGG I+ 
Sbjct: 334 GGGEITT 340


>gi|323214164|gb|EFZ98924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 230

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 13/242 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+
Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  
Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228

Query: 253 LG 254
           +G
Sbjct: 229 IG 230


>gi|326428152|gb|EGD73722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salpingoeca sp. ATCC 50818]
          Length = 518

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 178/469 (37%), Gaps = 115/469 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V MSGGVDS+V AALLK+ G+DV G  ++ ++ +   + +  C +  +    +R+C+
Sbjct: 50  RVAVGMSGGVDSTVAAALLKQQGWDVHGFFMRNWDEK---EERNVCTSEAEYASVQRICN 106

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++     D+   + N V  P   +Y AG TP P V CN  +KF       R LG D +
Sbjct: 107 RLSIPCQRVDFVADYWNDVFTPTVHAYEAGITPNPDVLCNAHIKFDAFYDYVRNLGFDWV 166

Query: 142 ATGHYIRSRLYVGDD---------------------------GKRRRIMCRPMDLERDQS 174
           ATGHY R+     D                             +   ++ R +D  +DQ+
Sbjct: 167 ATGHYARTTTINSDSLHTQDLHQEKQQQQQPQQQQQQQQQQRQRGVTLLRRAVDAHKDQT 226

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK 233
           YFL  T  Q+L  + FP+G M K  V+  AR +G   +A++ +S  +CFV + K+   + 
Sbjct: 227 YFLAGTPSQRLAHVLFPIGHMHKADVKAYARNLGFPELAEQKESMGMCFVGKRKFAHFLS 286

Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292
              A  +L G  V +  G  +G+    +  T+GQ   +     +P FVV  D ++  V V
Sbjct: 287 SYTA-ASLAGQFVDVETGACVGQGQSAMLLTMGQGARV-AGCPQPYFVVGKDMSTHTVYV 344

Query: 293 GP---RESLEVHRIYLREINWLGD----------GLFEDAVVDGFKC------------- 326
            P      L   R  + E+ W              L  D       C             
Sbjct: 345 APGDQHPLLYSARFGVGELTWSSPRVAAMVASGQALAADDHGGAVGCSGEQQEQQEHWQW 404

Query: 327 ---FVKIRSSQDPVPVFVQRNDD--------GVYVDF----------------------- 352
               V++R     V   +    D           VD                        
Sbjct: 405 GAMTVRVRHRAPLVAAKLHVRGDADGDASDARDAVDANDGALPGKYGASHGCVGEEQWER 464

Query: 353 ---EKSEVG--------------VASGQACVFYTSDSNEARVLGGGIIS 384
              E+++ G              V  GQ  VFY  +      +G   I+
Sbjct: 465 DTREQAQRGRLCGVVECGQVIRGVTPGQYAVFYAGE----LCVGRAEIT 509


>gi|269793188|ref|YP_003318092.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100823|gb|ACZ19810.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 346

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 129/358 (36%), Positives = 169/358 (47%), Gaps = 26/358 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            V MSGGVDSSV A +LK +G+  +GVTL             S    + V  ARR  + +
Sbjct: 7   AVLMSGGVDSSVTAMILKGEGHRPLGVTL--------LMSPSSSECSRSVQLARRTAEIL 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL-- 141
            + H V D  + FR  V+  F + Y AG TP PC DCNR VK   L     ++G D +  
Sbjct: 59  GIRHTVLDLRDLFRRHVMDKFRTEYMAGRTPNPCSDCNRNVKLGGLAERLDRMGLDGIPM 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R              +   +D  RDQSYFL    +  +  L FPLG M KE VR
Sbjct: 119 ATGHYARILKDPA-----GAHLAMGLDHRRDQSYFLAEVPKGIIRRLMFPLGGMTKEQVR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LA E  L    ++DS D CFV+ G Y +V+      I  +G IV L G +LG H G   
Sbjct: 174 LLAEEARLPARREADSMDSCFVEDGDYREVI---GPVIDSQGPIVDLRGNVLGIHQGFHR 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T+GQR+GLGV+  E L+V  +D  +  V+V PR+ L    +     NWL +G       
Sbjct: 231 FTVGQRKGLGVSSTEALYVKRIDPPT--VVVAPRDRLMERHVTASGGNWLEEGDLR---- 284

Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFE-KSEVGVASGQACVFYTSDSNEARV 377
            G +   K RS   P P  V +   D + V F  +       GQ  V Y  D      
Sbjct: 285 CGAQLLGKTRSQGRPSPCTVEEVEGDRIRVLFHGEGVFAPCPGQRLVLYRPDGVVVGC 342


>gi|77412720|ref|ZP_00788963.1| tRNA methyl transferase [Streptococcus agalactiae CJB111]
 gi|77161229|gb|EAO72297.1| tRNA methyl transferase [Streptococcus agalactiae CJB111]
          Length = 204

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 120/209 (57%), Gaps = 7/209 (3%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD +ATGHY +    V  D      M R +D  +DQ+YFL   +Q+QL    FPLG ++
Sbjct: 120 GADYVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQ 225
           K  VR +A E GL  A K DS  ICF+++
Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFMEK 204


>gi|170781459|ref|YP_001709791.1| tRNA-specific 2-thiouridylase MnmA [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189036220|sp|B0RGA6|MNMA_CLAMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169156027|emb|CAQ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 397

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 138/389 (35%), Positives = 186/389 (47%), Gaps = 24/389 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78
           M+++ AMSGGVDS+V AA     G+DV GV L L +    + R GS  CC  +D  DARR
Sbjct: 1   MKILAAMSGGVDSAVAAARAVDAGHDVTGVHLAL-SRMPGTLRTGSRGCCTVEDSMDARR 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + +  YV+D+ ERF   V+  F + Y AG TP PC+ CN  +KF+ LL     LG 
Sbjct: 60  AADLLGIPFYVWDFSERFAADVVDDFVAEYQAGRTPNPCMRCNERIKFAALLEKALDLGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197
           D + TGHY    +  G DG  +  + R     +DQSY L   T +Q+    FPLG    K
Sbjct: 120 DAVCTGHYA--DVLPGPDG--QPELHRAAAWAKDQSYVLGVLTAEQIAHSYFPLGSTPSK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR  A   G+ +A K DS DICF+  G     +       A  GDI+   G  +G H 
Sbjct: 176 AEVRAEAAARGIQVAQKPDSHDICFIPDGDTRGWLADRVG--AEPGDILDGEGNAIGTHQ 233

Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G   +T+GQR+GL +      G P FV+ +    + V+VGP+E+L +  I      W G 
Sbjct: 234 GAAAFTVGQRKGLAIGTPAPDGRPRFVLEIRPKDNTVVVGPQEALAIREIAGSSYTWAGT 293

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDG--VYVDFEKSEVGVASGQACVFYT 369
                     F C V+IR+  DPVP    V   D    + +       GVA GQ  V Y 
Sbjct: 294 PPTR--PDQPFDCDVQIRAHADPVPARAAVSVVDGSMQLVITPRDPLHGVAPGQTAVVYA 351

Query: 370 SDSNEARVLGGGIISGSKRSDAVEESLLS 398
                 RVLG   I  +  + A     + 
Sbjct: 352 G----TRVLGQVTIDRTVSAVADARPPVR 376


>gi|257463089|ref|ZP_05627490.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
 gi|317060688|ref|ZP_07925173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313686364|gb|EFS23199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 345

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 105/363 (28%), Positives = 184/363 (50%), Gaps = 23/363 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDS+V A LL+++GY+VI V   ++N+             +++ D +++ D
Sbjct: 4   KVILGMSGGVDSAVAAYLLQKEGYEVIAVHFSVHNTEA---------TQKELQDCQKIAD 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +++ Y +  E+ FR  +I  + S    G+TP PC  C+ ++KF  L     +  A+ +
Sbjct: 55  KFSLTLYSYSLEKEFREKIISYYLSETGKGKTPSPCPLCDDSIKFHLLFQEAEKRKANYV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY        ++     ++     + +DQ Y L+  + ++L  + FPL  ++K  VR
Sbjct: 115 ATGHYASISR---NNICNTTLLEVKHHIHKDQCYMLYRLSPKKLNKILFPLASLEKAEVR 171

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           +LAR++GL +++K DSQ ICF  +G Y + +K+  A    +G+ +   G ILG+H G   
Sbjct: 172 ELARDIGLFVSEKKDSQGICFAPEG-YQNFLKKHLAKKIQKGNFIDEKGNILGQHLGYPL 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG+   E  F+  +D   + + +G  ESL   ++ L +             +
Sbjct: 231 YTLGQRRGLGIKTKEICFITKIDPGKNEITLGNFESLMKDKVQLED----TVLHLPFERL 286

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLGG 380
              +   + R S       ++  +  +   + +       GQ  V FY +      V+GG
Sbjct: 287 KDMELLARPRFSSTGFFGKLKEEEGELTFHYFEKNAHNTPGQHLVLFYKN-----YVVGG 341

Query: 381 GII 383
           GII
Sbjct: 342 GII 344


>gi|257452732|ref|ZP_05618031.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|257466593|ref|ZP_05630904.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917748|ref|ZP_07913988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059273|ref|ZP_07923758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684949|gb|EFS21784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313691623|gb|EFS28458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 345

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 107/364 (29%), Positives = 187/364 (51%), Gaps = 23/364 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ MSGGVDS+V A LL+++GYDVI V   ++ + +  +          V D++ + +
Sbjct: 4   KVILGMSGGVDSAVAAYLLQKNGYDVIAVHFSVHKTERTQEE---------VKDSQTIAN 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++  Y +  E+ F+  +I  + +    G TP PC  C+ +VKF  L     + GA  +
Sbjct: 55  QFSIPLYSYCLEKEFQEKIISYYLTEIEKGRTPSPCPLCDDSVKFHLLFQEAEKHGAKYV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY        ++  +  ++     + +DQ Y L+  + ++L  + FPL  ++K  VR
Sbjct: 115 ATGHYAS---ISSNNVFKTSLLEANHHIHKDQCYMLYRLSSEKLKRILFPLSSLEKSEVR 171

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           ++AR++GL +++K DSQ ICF  +G Y   +K+  A    +G+ +   G ILG+H+G   
Sbjct: 172 EIARKIGLFVSEKKDSQGICFAPEG-YQAFLKKHLAHKIQKGNFIDEKGNILGKHSGYPL 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           YT+GQRRGLG+ M E  F+  ++ +++ + +G  ++L   ++ L    +          +
Sbjct: 231 YTLGQRRGLGIQMKEISFITKINPDTNEITLGKFDNLLEDKVILENTIFH----LPLETL 286

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLGG 380
                  + R S       V+  +  V   + +     ASGQ  V FY     E  V+GG
Sbjct: 287 KNMTLLARPRFSSTGFLGKVREENGVVTFHYFEKNAHNASGQHLVLFY-----ENYVVGG 341

Query: 381 GIIS 384
           GII+
Sbjct: 342 GIIA 345


>gi|194379662|dbj|BAG58183.1| unnamed protein product [Homo sapiens]
          Length = 328

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 27/297 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182
           +ATGHY R+ L   +  +++                    + +  D  +DQ++FL   +Q
Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +       
Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240

Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
            G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V    +
Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVVSGPA 296


>gi|212704994|ref|ZP_03313122.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098]
 gi|212671546|gb|EEB32029.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098]
          Length = 387

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 121/396 (30%), Positives = 171/396 (43%), Gaps = 57/396 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDV---IGVTLQLYNSRKASKRKGSCCAGQ--------- 71
            VA+SGGVDS      L+  G+DV    G+ L        +   G C A +         
Sbjct: 5   AVAVSGGVDSLCALLRLREQGHDVLALHGLFL------PDAASSGPCPAPEGPRLLTAAE 58

Query: 72  ------------DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                        V   +  C  + +  +V D    F   V+ PF  +YA G TP PC  
Sbjct: 59  ALAAPLPPASRQAVEGLQTACGQLGIPLHVADMRAVFDREVVTPFVRAYARGRTPNPCAL 118

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CNR +KF  LL     LGAD +ATGHY R       DG    ++    DL +DQSYFL  
Sbjct: 119 CNRAIKFGALLDTALSLGADRIATGHYARLL-----DGPSGPMLAAADDLAKDQSYFLSL 173

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK--YFDVVKRI-- 235
              ++L    FPL    K +     +E GL +    +SQ+ICF+  G+  Y   ++R   
Sbjct: 174 VPLERLRRAIFPLARQDKATSIAQVKEAGLAVPVPQESQEICFIPAGEDAYRAFLERRWQ 233

Query: 236 NAGIALEG------DIVHLNG----QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285
             G++L G      +    +G    + L RH G+  YT GQRRGLG+A  EPL+V+    
Sbjct: 234 AEGLSLPGSGPVLLEEAGSDGRPVLRPLARHEGLWRYTEGQRRGLGIAHSEPLYVLRKQG 293

Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345
             + ++VG R  L +H      +N L        +        ++R  Q P P  V+  D
Sbjct: 294 EDNTLVVGGRARLGMHGCLTGPVNLLCPPEQWPDI-----LLARLRHRQRPTPAQVELTD 348

Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           DG+ V   + +   A GQ    Y     + RVL G 
Sbjct: 349 DGLRVTLAEPQFPSAPGQVAAIYD---EQGRVLAGA 381


>gi|317484664|ref|ZP_07943565.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6]
 gi|316924020|gb|EFV45205.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6]
          Length = 356

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 187/380 (49%), Gaps = 37/380 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVT-LQLYNSRKASKRKGSCCAGQDVYDAR 77
           M + VA+SGG DS    A L+R+ Y   VI    LQ     K +  +     G +V    
Sbjct: 1   MTIAVAVSGGADSLYAMASLQRE-YPGQVIAFHALQ-----KETSPEDDPVPGLEVS--- 51

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C  + V  ++ D +E F   ++ PFA SYA GETP PCV CN  VKF   +   R+LG
Sbjct: 52  --CRALGVPLHILDLQEAFFRQIVRPFAESYAHGETPNPCVRCNALVKFGLWMDEARKLG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LATGHY+    +     +    + +  D  +DQSYFL  T   +L +  FPL  ++K
Sbjct: 110 ADRLATGHYVSLAEHP----RYGMALHQGADEAKDQSYFLALTPISRLKNAVFPLARVRK 165

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR    E GL +    +SQ+ICFV    Y   +K I   +   G +V L+G ++GRH 
Sbjct: 166 SEVRAALAEWGLSVPLPRESQEICFVPDDDYRAFLKGIGVRLPAGGPMVLLDGHVVGRHG 225

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  YT GQRRGLGV+  EPL+V+  D++ + +++G  + L V+     E+N+L      
Sbjct: 226 GLWQYTEGQRRGLGVSWTEPLYVIGKDRSRNALLLGTADELPVNACAAGELNFLV----- 280

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---------VYVDFEKSEVGVASGQ-ACVF 367
              +   +  V+ R  Q  VP  ++    G         + + F + ++  A GQ A VF
Sbjct: 281 PPELWPHELRVRTRYRQKAVPADIRLVGGGESGMDATARMLIRFHQPQLPSAPGQLAAVF 340

Query: 368 YTSDSNEARVLGGGIISGSK 387
                    VL GGII   +
Sbjct: 341 ----DEHGHVLAGGIICKER 356


>gi|219685499|ref|ZP_03540316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii Far04]
 gi|219672898|gb|EED29920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia garinii Far04]
          Length = 344

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 168/333 (50%), Gaps = 20/333 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++ V +SGGVDSSV    +   GY  I    L+++   + S   G+C   +D+     V
Sbjct: 1   MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  NV + + ++++ + N V+         G TP P + CN+ +KF        +   D
Sbjct: 60  CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINEQ-YD 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGHY R ++      +++  + +  D  +DQSYFL   +Q+Q+  L FPLG + K  
Sbjct: 119 LVVTGHYARIQIK-----EKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258
           VR +A+ + L   D+ DSQ ICF+ + KY + +K        +G+IV    G+I+G HNG
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGE--KKGNIVEKETGKIIGIHNG 231

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315
              +T+GQRRG+ ++ G P FV+  D   + + +   E+       +  + EI+W+    
Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINGMP 290

Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348
            +    + FK  +KIR  +      ++   + +
Sbjct: 291 SD---FENFK--IKIRHGEKKYSCKLRLITNNL 318


>gi|150021435|ref|YP_001306789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosipho melanesiensis BI429]
 gi|205828980|sp|A6LNA3|MNMA_THEM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149793956|gb|ABR31404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosipho melanesiensis BI429]
          Length = 339

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/349 (30%), Positives = 175/349 (50%), Gaps = 23/349 (6%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96
           +K+ GY V    L+         ++     CC+  D +DA++V     V   +   E  F
Sbjct: 1   MKKKGYAVTAYHLKTVPDSLYLTKQIKHKVCCSPSDTFDAKKVAQKFGVELKIIHVENVF 60

Query: 97  RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDD 156
           R  +I  F + Y  G TP PC  CN  +KF  LL    Q G D +A+GHY   R     D
Sbjct: 61  RETIIKYFINEYKRGRTPNPCFFCNDWIKFGVLLERIIQDGNDYVASGHYALLR-----D 115

Query: 157 GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSD 216
           GK    + +  + E+DQSYFL +  +++L  L FP G+  K+ +R++A+++ + I  K D
Sbjct: 116 GK----LYKAKNKEKDQSYFLASIKREKLGYLVFPNGEYNKDEIRNIAKDLNIHIHSKED 171

Query: 217 SQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE 276
           SQD+CF+     +  +K    G   EG I+   G ILG H G+ NYTIGQR+ +G+A+ E
Sbjct: 172 SQDLCFIPDNNIYGFLKENGVG-FKEGLIIDTKGNILGTHKGLSNYTIGQRK-IGIAVRE 229

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
            ++V+  D   + ++VG +  +  ++  + ++N+L D      V    + +VK+R     
Sbjct: 230 RMYVLRKDFEKNLLVVGKKGEVFNNKFTVSKLNFLQD------VYKKIEGYVKVRKKFKE 283

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           V   V  ++D +YV+  +    +  GQ  V Y  D     V+  G+I  
Sbjct: 284 VKCRVYVDNDNLYVETREPIFAITPGQIAVIYDEDGA---VIVSGVIEK 329


>gi|308811570|ref|XP_003083093.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116054971|emb|CAL57048.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 431

 Score =  317 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 163/385 (42%), Gaps = 48/385 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVV +SGGVDS++ A  LKR G DV   T + ++       +  C    D+  A  +   
Sbjct: 58  VVVGLSGGVDSAIAAWALKRCGADVTAATTKNWDGLNEDANE-DCGYRDDLRSATEIARK 116

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADVL 141
           I +     D+   + N V  P+  ++A+G TP P ++CNR+VKF  LL   T  +G D+L
Sbjct: 117 IGIPLTEIDFTREYWNDVFEPYVKAFASGATPNPDLECNRSVKFGALLRHVTDVMGGDLL 176

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    VG+    R  + R +D  +DQSYFL + +   L    FPLG+M K   R
Sbjct: 177 ATGHYARIDRGVGE----RVRLLRGVDETKDQSYFLASVSGDALSKACFPLGEMLKSETR 232

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
           + AR +GL  A++  S  ICF+        V           D+   +G+   +  G+++
Sbjct: 233 EAARALGLPCAERRSSAGICFIVHRPERGRVCGRR-------DVASRSGRAAAQGVGVVH 285

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFED 318
              G+         +P FV+  +   + V V      ++L      L +  W+     E 
Sbjct: 286 ---GRSTRENRRPAKPWFVIGKNVEENVVYVANGADHDALFSTTAELADEFWISGERPE- 341

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV--------------------QRNDDGVYVDFEKSEVG 358
                 +   K R +    PV +                        + +   F+  E  
Sbjct: 342 ----MNRLLAKARYASPLTPVTIASASSESFTPSKFSSSYVSASSLSESLRATFDAPERA 397

Query: 359 VASGQACVFYTSDSNEARVLGGGII 383
           V  GQA V Y  D      LGG +I
Sbjct: 398 VTPGQALVLYDGDV----CLGGAVI 418


>gi|288575004|ref|ZP_06393361.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570745|gb|EFC92302.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 349

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 171/368 (46%), Gaps = 30/368 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDS   A LL+R GY+ IGV L L                         
Sbjct: 6   DRRVLLGVSGGVDSCAAALLLRRSGYEPIGVRLILKEKEDRLDEARLKGL---------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++ +     D  + FR++V+ PF  +Y    TP PCV CN  VKF  L     + G  
Sbjct: 56  -NSLGIPVVEIDGRKAFRSSVVEPFLEAYERSITPNPCVLCNERVKFRLLFEEADRRGIH 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TGHY  +  Y G        + R     +DQSY L+    + L  L FPL ++ K  
Sbjct: 115 TVGTGHYAGTTPYRG-----GSAISRAEIGGKDQSYMLYRLPSEWLDRLIFPLENLSKPE 169

Query: 200 VRDLA-REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
           VRDL  RE   +     DSQDICF+  G     +       A  G ++ L+G +LGRH G
Sbjct: 170 VRDLVFREFDDEELKSGDSQDICFIP-GSLDSFLDENLREEAGPGPMISLDGDVLGRHRG 228

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +  YT GQR+GLG+  G P FVV  D++ + +I+G      V RI    + W      + 
Sbjct: 229 LCRYTEGQRKGLGLGGG-PWFVVRKDRSENALILGRETDTSVVRIGFSMLKW------QH 281

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V +G     + R    P+P  V R + G   V  EKS  GVA GQ+ V Y        +
Sbjct: 282 KVNEGSVYLAQHRYRSAPIPAVVSRLNQGSAEVLLEKSARGVALGQSLVLYDG----PCL 337

Query: 378 LGGGIISG 385
           LGGG+I  
Sbjct: 338 LGGGVIDR 345


>gi|219123581|ref|XP_002182101.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406702|gb|EEC46641.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 394

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/384 (27%), Positives = 162/384 (42%), Gaps = 43/384 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY------DVIG------VTLQLYNSR-KASKRKGSCC 68
           RVV+A+SGGVDS+V AALL+   Y      D IG      V +  +NS  +      SC 
Sbjct: 1   RVVLALSGGVDSAVAAALLQET-YGSSNNSD-IGSAVLQTVHMSNWNSNTQDDDSIASCT 58

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + QD  DA  V + + ++     +E  + N V  P+ +    G    P + CN  VKF  
Sbjct: 59  SEQDWKDATAVAEHLRLNLTRQHFEREYWNQVFEPYVNDILRGTMGNPDIGCNVHVKFGA 118

Query: 129 LLSVTR---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           L        + G D   + HY               ++    D  +DQSYFL A    QL
Sbjct: 119 LREFADWVLRWGWDQPPSPHYSHHNHQYQ---TPPPLLLAAADPSKDQSYFLSACAGYQL 175

Query: 186 CDLRFPLGDMKKES---------VRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKR 234
            ++ FPLG+  K+          VR LA++  L  A+K +S  ICFV +    + D +  
Sbjct: 176 SNVLFPLGEYYKKENPSNDGKPTVRQLAKDYNLPNANKRESMGICFVGKRQSGFGDFLHE 235

Query: 235 INAGIALEGDIVHLN-GQIL----GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSR 289
                      V ++ G +L     ++   + YTIGQ   +  A  E  FVV  D   +R
Sbjct: 236 YLPHPLRPLQFVDVDTGAVLPAPTPKNAHAVLYTIGQGAKISGAS-EKYFVVDSDVAQNR 294

Query: 290 VIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRND 345
           V+V       +L    + L  + W    +       G  +   +IR  Q  +   ++   
Sbjct: 295 VLVCAGTHHPALYADSLVLETVYWTAGEMPGPLQKRGRLRLQCRIRHLQPLIDCELRVEL 354

Query: 346 DG-VYVDFEKSEVGVASGQACVFY 368
           DG + V F+K+  G+  GQ   FY
Sbjct: 355 DGSLTVYFDKAVRGITPGQTAAFY 378


>gi|251772733|gb|EES53295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospirillum ferrodiazotrophum]
          Length = 372

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 178/372 (47%), Gaps = 19/372 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDV 73
            ++  +V+ MSGGVDS+V A LLK++GYDV GV L+L+    +   KG     CC    V
Sbjct: 2   KRNKSIVIGMSGGVDSAVSAWLLKKEGYDVTGVILRLWGKDSSEASKGWGERTCCHVPMV 61

Query: 74  YDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                +C   +N+ + + D E  F++ V+  F S+Y  GETP PC  CN  VK   L   
Sbjct: 62  EY---LCQKILNIPYAIVDAESAFKSDVVDSFKSAYRTGETPNPCTSCNEKVKLPLLRRW 118

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + G   +ATGHY   +     +      +    DL +DQSYFL  T      +  FP+
Sbjct: 119 AEENGIPKVATGHYTYWKRSEDFNVSG---LAMAHDLAKDQSYFLSRTPDLCPENTVFPV 175

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQ 251
           G M K  VR+LARE G  +    ++Q++CFV + +  + +   I+        +  + G+
Sbjct: 176 GRMSKPQVRELAREAGFPVEGLLENQEVCFVSEKRVTEFLSHEIDQDHRGPWTVRTIAGE 235

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
            LG     I  T GQR+GL VA G  L+V  +D    ++ +  R  L      ++     
Sbjct: 236 ALGTIPTGIGLTRGQRKGLSVAGGRRLYVHTVDIQERQLWLSDRSDLFESAFTVKSP--- 292

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371
              +FE       + FV+ RS+  PVP  V+  ++G     E+   G+  GQ   FY  +
Sbjct: 293 MGMMFEKKGKKLGELFVRFRSTMSPVPCRVEDAEEG-RFRLERPHDGIVEGQVAAFYDKE 351

Query: 372 SNEARVLGGGII 383
                ++G G+I
Sbjct: 352 ---NILVGSGLI 360


>gi|325973163|ref|YP_004250227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma suis str. Illinois]
 gi|323651765|gb|ADX97847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma suis str. Illinois]
          Length = 369

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 182/374 (48%), Gaps = 25/374 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDAR 77
           + +VV+A+SGGVDSSV A LLK++GY V G+ +  ++S+         C    +D   A 
Sbjct: 6   EKKVVIALSGGVDSSVAALLLKKEGYKVFGIHMINWDSQLNELEMDKECESLSKDREYAE 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136
            +   + +  YV+++   + N V  PF S         P + CN  +KF  LLS  ++  
Sbjct: 66  LIAQQLEIPFYVYNFTFEYWNYVFKPFISLLNKNLIGNPDILCNSAIKFGTLLSKVKRVF 125

Query: 137 GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G DV LATGHY +      +      ++    + ++DQ+YFL   TQ QL ++ FPL ++
Sbjct: 126 GPDVLLATGHYAKVISIENN-----VLLGTCSNEQKDQTYFLSKLTQFQLREIIFPLSEI 180

Query: 196 -KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-L 253
             K+ VR++A+E      +K  S+ ICF+ +  ++  + +     + +G IV +  Q  L
Sbjct: 181 DSKQKVREIAKENNFPNWNKRSSRGICFIGKRNFYSFISKYVD--SKKGSIVDIENQKYL 238

Query: 254 GRHNGIINYTIGQRRG-LGVAMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYLREI 308
           G+H G+  Y++ QR+G L     E  +V   D+N+S + V    +    L+ +      I
Sbjct: 239 GQHQGLCYYSMNQRKGQLVSGQKEKYYVCGRDENNSTLFVCGESNRDKYLKKNYCVADNI 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368
           +W+G          G K  +K + +   +   +++ +        +S    + GQ  VFY
Sbjct: 299 HWIG-----TPPEIGRKILLKFKHTPRFISGTIKKINSKEVEISHESCFSTSPGQYIVFY 353

Query: 369 TSDSNEARVLGGGI 382
           + D  +   LG GI
Sbjct: 354 SLD--KKICLGSGI 365


>gi|254390807|ref|ZP_05006019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197704506|gb|EDY50318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 367

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 131/361 (36%), Positives = 174/361 (48%), Gaps = 24/361 (6%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M    A           P+ +RV+ AMSGGVDS+V AA     G+DV GV L L ++   
Sbjct: 1   MPRFPAPYPGRAMTQTPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQ 59

Query: 61  SKRKG--SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
           S R G   CC  +D  DARR  D I +  YV+D  ERFR  V+  F + Y AG TP PC+
Sbjct: 60  SFRTGARGCCTIEDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCL 119

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            CN  +KF+ LL     LG D + TGHY              R + R  D+ +DQSY L 
Sbjct: 120 RCNEKIKFAALLDKALALGFDAVCTGHYATVVTLPD----GGRELHRASDMAKDQSYVLG 175

Query: 179 ATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
              ++QL    FPLGD    K+ +R  A   GL +A K DS DICF+  G     +    
Sbjct: 176 VLDERQLAHAMFPLGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRL 235

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIV 292
                EGDIV  +G  LG H G   +TIGQR+GL +      G+P +V+ +    +RV V
Sbjct: 236 GRA--EGDIVDESGTRLGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTV 293

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGV 348
           GP E+L+V  +      W G      A         ++R+     PV      +R D GV
Sbjct: 294 GPAEALDVVGLTAIRPRWCG-----TAPAGADAYTAQLRAHGGETPVMGEPVRRRADTGV 348

Query: 349 Y 349
           +
Sbjct: 349 H 349


>gi|330803532|ref|XP_003289759.1| hypothetical protein DICPUDRAFT_154197 [Dictyostelium purpureum]
 gi|325080152|gb|EGC33720.1| hypothetical protein DICPUDRAFT_154197 [Dictyostelium purpureum]
          Length = 428

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 107/396 (27%), Positives = 184/396 (46%), Gaps = 29/396 (7%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           + + T +    +D  P   +V V MSGGVDS++ A +LK  G+DV GV ++ ++     +
Sbjct: 41  ILKNTPIRFPSMDLIPTKPKVAVGMSGGVDSTITAKILKHQGFDVTGVFIKSWDD---IE 97

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
             G C   +D  DA  V   +++  Y  D+ + + N V   F   Y +G TP P V CNR
Sbjct: 98  ESGRCQGERDYKDAIAVAKYLDIPMYQADFVKDYWNRVFTGFLKDYQSGITPNPDVWCNR 157

Query: 123 TVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            +KF   +   ++  G D +ATGHY    LY   +   +  + R +D  +DQ+YFL  T 
Sbjct: 158 EIKFDLFIDFAKENFGVDYIATGHYSN--LYYDKNDPNKIELYRSVDKSKDQTYFLCMTK 215

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            + L +  FP+GD  K+ + D A+ +    ++  K  S+ ICF+ +    D + +     
Sbjct: 216 TKGLANSIFPIGDFTKDKIIDFAKTIPDFTNVLSKKSSRGICFIGKKSLPDFLSQYIDL- 274

Query: 240 ALEGDIVHLNGQIL---GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295
              G    ++   +    +H G I YTIGQ+  +  +  E  +VV  D   + V V P  
Sbjct: 275 -KPGFYYDISKGFIIPHQKHQGSICYTIGQKAKIH-SSSEKYYVVSTDIKKNIVNVCPES 332

Query: 296 ---ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------ 346
              + L   +  +  +NW+ +   E    +GFK   + +   + V + ++R DD      
Sbjct: 333 LVSKYLNFSQFQIHGLNWINEIPKEVFSEEGFKARGQYKHRGEIVELIMKRTDDLYNNSN 392

Query: 347 --GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              + +   +    +ASGQ    +  D++  +  GG
Sbjct: 393 VYNIQIT-SEPIRNLASGQILCLFDKDTD--KCYGG 425


>gi|307107356|gb|EFN55599.1| hypothetical protein CHLNCDRAFT_35486 [Chlorella variabilis]
          Length = 418

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 169/406 (41%), Gaps = 58/406 (14%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQ 71
           D   +  RV V +SGGVDS+V A LL+  GY+V+GV ++ ++  + +  +   G C A  
Sbjct: 8   DLPGRGRRVAVGISGGVDSAVAALLLQWQGYEVVGVFMRNWDEGEETGNQNCSGGCPAAH 67

Query: 72  DV--------YDARRVCDT----INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                        +  C      +                V   F +    G TP P + 
Sbjct: 68  RGGMRGFRRGAPGQAACAAGPTGLG---------------VFSEFLAQCGRGLTPNPDLA 112

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           CNR +KF  LLS   QLGA ++ATGHY R     G  G     + R  D  +DQSYFL +
Sbjct: 113 CNRHIKFDALLSFAGQLGAGLVATGHYARLAPGGGGGGGGGVSLLRGADRLKDQSYFLAS 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
                L  + FP+G + K  VR LA   GL  ADK  S  ICF+ +  +   + +  A  
Sbjct: 173 VQPAALRRVLFPVGHLSKAEVRRLAAAAGLATADKRSSAGICFIGRRNFAAFLGQYLA-- 230

Query: 240 ALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---R 295
            L G  V + +G +LG    +   T GQR G+G A  E ++ V  D     V V      
Sbjct: 231 PLPGRYVDVGSGAVLGTCPDLAAVTHGQRPGIGGA-PERVYAVGKDVVERVVYVAQGRGH 289

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVP-----------VFVQR 343
            +L      LR  +WL  G        G  +C  K R  Q P P             +Q 
Sbjct: 290 PALLCTTALLRTPHWLSAGHAAQLAAQGWLRCQYKARYGQQPRPSERLGFRPSAYCRLQP 349

Query: 344 NDDG-----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            D       + V F++  V +   QACV Y  +      LG  +I+
Sbjct: 350 QDSRMLGSYLVVRFDEPGVAITPQQACVLYDGE----LCLGAALIA 391


>gi|325989606|ref|YP_004249305.1| Trifunctional protein ribF/mnmA [Mycoplasma suis KI3806]
 gi|323574691|emb|CBZ40347.1| Trifunctional protein ribF/mnmA [Mycoplasma suis]
          Length = 369

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 185/375 (49%), Gaps = 27/375 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDAR 77
           + +VV+A+SGGVDSSV A LLK++GY V G+ +  ++S+         C    +D   A 
Sbjct: 6   EKKVVIALSGGVDSSVAALLLKKEGYKVFGIHMINWDSQLNELEMDKECESLSKDREYAE 65

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136
            +   + +  +V+++   + N V  PF S         P + CN  +KF  LLS  ++  
Sbjct: 66  IIAQQLEIPFFVYNFTFEYWNYVFKPFISLLNKNLIGNPDILCNSAIKFGTLLSKVKRVF 125

Query: 137 GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G DV LATGHY +      +      ++    + ++DQ+YFL   TQ QL ++ FPL ++
Sbjct: 126 GPDVLLATGHYAKVISTENN-----VLLGTCSNEQKDQTYFLSKLTQFQLREIIFPLSEI 180

Query: 196 -KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-L 253
             K+ VR++A+E      +K  S+ ICF+ +  ++  + +     + +G IV +  Q  L
Sbjct: 181 DSKQKVREIAKENNFPNWNKRSSRGICFIGKRNFYSFISKYVD--SKKGSIVDIENQKYL 238

Query: 254 GRHNGIINYTIGQRRG-LGVAMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYLREI 308
           G+H G+  Y++ QR+G L     E  +V   D+N+S + V    +    L+ +      I
Sbjct: 239 GQHQGLCYYSMNQRKGQLVSGQKEKYYVCGRDENNSTLFVCGESNRDKYLKKNYCVADNI 298

Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367
           +W+G          G +  +K + +   +   +++ N + V +   +S    + GQ  VF
Sbjct: 299 HWIG-----TPPEIGREILLKFKHTPRFISGTIKKINGEEVEIS-HESCFSTSPGQYIVF 352

Query: 368 YTSDSNEARVLGGGI 382
           Y+ D  +   LG G+
Sbjct: 353 YSLD--KKICLGSGV 365


>gi|283852168|ref|ZP_06369441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. FW1012B]
 gi|283572394|gb|EFC20381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. FW1012B]
          Length = 357

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 163/366 (44%), Gaps = 26/366 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           MR+ VA+SGG DS +   LL+ +G+DV+ V           +             AR + 
Sbjct: 1   MRLAVAVSGGADSLLSLGLLRAEGHDVVAVHAHFLPPDMKGQEL-----------ARAIE 49

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C  + V     D    F   V+ PF ++YAAG+TP PC  CNR +KF  L+   R+LG
Sbjct: 50  TQCGRLGVPFAAVDLSREFGRQVVAPFIAAYAAGQTPNPCAACNRDMKFGLLMEAARELG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LATGH+ R +     +  R   + R  D  RDQSYFL    +  L    FPL   +K
Sbjct: 110 ADKLATGHFARLQ-----ETDRGPALFRGADDSRDQSYFLSLVPRDALARAVFPLARRRK 164

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
                    +GL      +S+++CFV    Y   ++   A +   G IV  +G  LG H 
Sbjct: 165 ADHPAALAALGLAPPLPKESREVCFVPGDDYRAFLEASGAALTGPGPIVLTDGTRLGTHQ 224

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G+  +TIGQR+GLG+A  +PL+V+  D  ++ ++VG R  L+         N L D    
Sbjct: 225 GLWRHTIGQRKGLGIAYADPLYVLGKDTAANTLVVGVRADLDATACRTGPANLLADPAGW 284

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376
            A         +      P P       D G+ + F+        GQ    Y       R
Sbjct: 285 PATA---TVLAQTCYRMRPRPARAVLGPDGGLALTFDAPVARPTPGQVATVYD---AAGR 338

Query: 377 VLGGGI 382
           VL GG+
Sbjct: 339 VLAGGV 344


>gi|224537479|ref|ZP_03678018.1| hypothetical protein BACCELL_02358 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520917|gb|EEF90022.1| hypothetical protein BACCELL_02358 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 350

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/346 (30%), Positives = 162/346 (46%), Gaps = 23/346 (6%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               RV++ MSGG DSSV A  L+  GY+V GVT + Y    A++          + DAR
Sbjct: 2   KSKERVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGATEY---------LDDAR 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   + + H  +D  E FR+ +I  F   Y AG TP+PC  CN  +K++ L  +  + G
Sbjct: 53  ALASRLGIEHITYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWTLLAKIADEKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              ++TGHY+R  L  G     +  M    D ++DQ++FL+   Q  +  +  P+GD+ K
Sbjct: 113 IYWISTGHYVRKILQGG-----KYYMAPAADRDKDQTFFLWGLKQDIIQRMLLPMGDITK 167

Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE--GDIVHLNGQILG 254
              R  A   G   +A K DS  +CF     Y   ++R      L   G  +  NG  LG
Sbjct: 168 VEARAFAAARGFHGVATKKDSIGVCFCP-RDYRSFLRREAGAQKLPNKGKFIDENGCFLG 226

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314
            H G   YTIGQRRGLG+ M   +FV  +    + V++ P  SL    ++L+  N +   
Sbjct: 227 WHEGYPFYTIGQRRGLGIQMNRAVFVKEISVERNEVVLAPLASLYKQEMWLKGWNLV--- 283

Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGV 359
             E  V+   +  VKIR  +      V     D ++V   +    +
Sbjct: 284 -EESRVLQAKEVIVKIRYRKQANHCRVTLAAGDLLHVQLTEPLESI 328


>gi|88195430|ref|YP_500234.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|87202988|gb|ABD30798.1| tRNA methyl transferase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 257

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 17/262 (6%)

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LGAD +ATGHY R   +          M R +D  +DQ+YFL   +QQQL  + FP+G
Sbjct: 1   MNLGADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIG 56

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           D++K  VR +A E GL  A K DS  ICF+ +  +   + +     A  GD++ L+G+ +
Sbjct: 57  DIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKM 114

Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309
           G+H+G++ YTIGQR GLG+   G+P FVV  +   + + V      ++L    +   + +
Sbjct: 115 GKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYS 174

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368
           ++     ++ +  GF+C  K R  Q    VFV+R +D  + V F +    +  GQA VFY
Sbjct: 175 FVNPE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFY 232

Query: 369 TSDSNEARVLGGGIISGSKRSD 390
             D      LGG  I    +++
Sbjct: 233 QGDV----CLGGATIDDVFKNE 250


>gi|303247462|ref|ZP_07333734.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans
           JJ]
 gi|302491158|gb|EFL51050.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans
           JJ]
          Length = 346

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 157/364 (43%), Gaps = 24/364 (6%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-CDT 82
            VA SGG DS +   LL+++G+ V  +                    Q + DA    C+ 
Sbjct: 5   AVAASGGADSLLALGLLQKEGHGVFAIHAHFLPPDD---------KQQQLADAIAAQCEA 55

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V     D  + FR  VI PF ++Y AGETP PC  CNR +KF  L      LGAD +A
Sbjct: 56  IGVPFQAIDLSDAFRARVIAPFIAAYVAGETPNPCAACNRDLKFGLLAEAAISLGADKIA 115

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY         D      + R  D  RDQSYFL    Q  L    FPL   KK    +
Sbjct: 116 TGHYAGLA-----DTPEGAALFRGADATRDQSYFLSLVPQSALARALFPLARRKKADNPE 170

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
               + L      +S+++CFV    Y   ++     ++  G I   +G ILG H G+  +
Sbjct: 171 ALAALDLAPPLPRESREVCFVPGDDYRAFLEASGVPLSGPGPIALPDGTILGAHQGLWRH 230

Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322
           TIGQR+GLGV   EPL+V+  D  ++ + VGP++ L       RE+N L         V 
Sbjct: 231 TIGQRKGLGVGWREPLYVLAKDAAANTLRVGPKQDLLAASCRAREVNVLVPPRDWPETVL 290

Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           G  C         P P       DG + + FE        GQ    Y       RVL GG
Sbjct: 291 GQTC-----YRMAPRPARAAIAADGSLDIVFEAPLPRPTPGQVATLYD---AAGRVLAGG 342

Query: 382 IISG 385
           +I  
Sbjct: 343 VIVA 346


>gi|149239668|ref|XP_001525710.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451203|gb|EDK45459.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 509

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 105/427 (24%), Positives = 173/427 (40%), Gaps = 58/427 (13%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           N +     P D R+++AMS GVDSS+ AAL      +V G+ +  +       R+ S C 
Sbjct: 79  NYIQPTPGP-DDRIIIAMSSGVDSSLCAALYASKYKNVHGIYMANW-------RQSSQCT 130

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D  D + VC  +++S    + E  +   V  P    YA G TP P V CNR VKF  L
Sbjct: 131 ERDWRDVQTVCKQLDISCERINLELEYWQNVFQPMIDGYAKGLTPNPDVGCNRYVKFGRL 190

Query: 130 LSVTRQL-----GADVLATGHYIRSRLYVGDD--------------------------GK 158
             +  +      G   L TGHY R    +  +                            
Sbjct: 191 CEIMEERYGNEKGKWWLVTGHYARVMKKIVKEPSLAHENVDTSIVKQTPTPTNDTDFKAN 250

Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
               + R +   +DQSY+L   +   L  L  PLG   K   R LA+   L  + K D Q
Sbjct: 251 EEYHLLRGLSTRKDQSYYLSTISPLILPHLLLPLGHQLKSQTRQLAQNYKLHTSQKPDLQ 310

Query: 219 DICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
            +CFV+   + +    +   I    G+IV  +G++ G+H G+ + TIGQ+  + +  G+P
Sbjct: 311 GLCFVEPSNHSNFRDFLAEYIEPNPGNIVTTDGKVWGKHKGLWHATIGQKSSVLMPQGDP 370

Query: 278 -----LFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVK 329
                 FV   +   + +++        L    + L    W+ +      + +      +
Sbjct: 371 QYKGVWFVAEKNVAKNEIVIVRGHDNPLLFSQVVTLDTCEWVYEWEKVQQLKEESAVSFQ 430

Query: 330 IRSSQDPVPV-FVQRNDDG-----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             S    + V  +    +      + ++  +    VA GQ  V Y  +    +VLG G+I
Sbjct: 431 FSSLSKAILVKRITVLGNKQFGKQLKIELIEPVRAVAPGQQGVLYRGN----QVLGSGMI 486

Query: 384 SGSKRSD 390
             ++RS+
Sbjct: 487 VKTERSN 493


>gi|260655076|ref|ZP_05860564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jonquetella anthropi E3_33 E1]
 gi|260630187|gb|EEX48381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jonquetella anthropi E3_33 E1]
          Length = 344

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 167/369 (45%), Gaps = 36/369 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC-- 80
           V+V +SGGVDS      L+  GY V  V L++ +                  D +R+   
Sbjct: 5   VLVGVSGGVDSICSCLKLRDLGYQVAPVFLKMKDQADE-------------RDVQRIARF 51

Query: 81  -DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +   ++    D  E FR  VI PF     AG TP PCV CN+ +K   L     +    
Sbjct: 52  EEVTGLTVETVDCRELFRQRVIEPFLQELTAGRTPNPCVICNQFLKVRLLFEEADRRQIG 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY +    +  DG  R  + R     +DQSY L+   Q  L  L FPL + +K  
Sbjct: 112 AVATGHYAK---ILQKDGLCR--LARGA-SAKDQSYMLYRLPQAYLERLVFPLENSEKGQ 165

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNG 258
           VR LARE         DSQDICF+        +     G A   G +V  +GQ+LGRH G
Sbjct: 166 VRRLAREALGGSFGDGDSQDICFLGSLGLNAFLASHVTGAAIQPGQMVSDSGQVLGRHRG 225

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           + +YT+GQR+GLG+  G P +V     +  ++I+   E  E  RI L++  W        
Sbjct: 226 LAHYTVGQRKGLGLGGG-PWYVTEKRLDERQLILSHVERPE-RRIILKDPVWHV------ 277

Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377
              +     V+ R    P P  ++R D+G + V  +      A GQ+ V Y  +     V
Sbjct: 278 LPDETKSYLVQTRYRSHPKPCTLRRTDEGRWAVLLDAPSGASAPGQSAVVYDGE----LV 333

Query: 378 LGGGIISGS 386
           +GGGII  S
Sbjct: 334 VGGGIIHQS 342


>gi|317507343|ref|ZP_07965081.1| tRNA methyl transferase [Segniliparus rugosus ATCC BAA-974]
 gi|316254361|gb|EFV13693.1| tRNA methyl transferase [Segniliparus rugosus ATCC BAA-974]
          Length = 354

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 113/300 (37%), Positives = 156/300 (52%), Gaps = 19/300 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79
           MRV+ AMSGGVDS+V AA     G+DV+GV L L  +   ++     CC+ +D  DARR 
Sbjct: 1   MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSRNPDNTRGGSRGCCSVEDSRDARRS 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  YV+D+ E F   VI  F ++YA G TP PCV CN  +KF+ LL     LG D
Sbjct: 61  ADVLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVALGFD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       DG     + R  D ++DQSY L   T +QL    FP+GD  K  
Sbjct: 121 KVATGHYARL------DGT---TLRRSADPDKDQSYVLAVLTAEQLARAMFPVGDTPKPQ 171

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN----AGIALEGDIVH-LNGQILG 254
           +R+ A   GL +A K DS DICF+  G     +           +  G+      G++LG
Sbjct: 172 IREEADRRGLAVAQKPDSHDICFIPSGDTKAFLGAKLAVRSGAGSRPGEFRDHRTGEVLG 231

Query: 255 RHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310
            H+G + +T+GQRRGL +        P +V  ++  +  V VG  E L V  +  R+  W
Sbjct: 232 HHDGAVGFTVGQRRGLRLGNPTGDGIPRYVTAVEPETGVVRVGTLEDLRVRSLVARKAVW 291


>gi|255087530|ref|XP_002505688.1| predicted protein [Micromonas sp. RCC299]
 gi|226520958|gb|ACO66946.1| predicted protein [Micromonas sp. RCC299]
          Length = 346

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/350 (30%), Positives = 153/350 (43%), Gaps = 38/350 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGGVDS+V A LLK  G+DV GV ++ ++  + +   G C   +D  DAR    
Sbjct: 3   RVAVGLSGGVDSAVTAWLLKSAGFDVTGVLMRNWDEAEETG--GECSFEKDQRDARAAAR 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSY-AAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139
            + +     D+ + + ++V  PF   +   G TP P + CNR +KF  LL    R LGAD
Sbjct: 61  AVGIPLTEVDFVKEYWHSVFEPFLRDFDGGGATPNPDLACNRHIKFGALLDHCLRSLGAD 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LATGHY R       D      + R +D ++DQSYFL +   + L    FPLG + K  
Sbjct: 121 LLATGHYARIVRI---DETNPPRLLRGIDPDKDQSYFLASVRGESLERACFPLGGLTKRE 177

Query: 200 VRDLA---REMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIAL-------------- 241
           VR+LA     +   +  +  S  ICF+ +   + D ++                      
Sbjct: 178 VRELAAGPANLPAAVTRRRSSAGICFIGRKRDFGDFIQEYLPAEGEMRADSSRGDRRGED 237

Query: 242 -----EGDIVHLN-GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN--SSRVIVG 293
                 G  V +  G+ +GRH G+  YT GQR  LG A   P +VV  D    S+ V V 
Sbjct: 238 SSRGASGSFVSVESGEAVGRHGGLARYTCGQRARLGGAS-VPWYVVGKDSRGGSNSVYVA 296

Query: 294 P---RESLEVHRIYLREINWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPV 339
           P     +L      +    W+          D G K   + R     V  
Sbjct: 297 PGADHPALFTTSAAITRCFWVSGARPRGMDTDRGAKLSAQTRYGARAVSC 346


>gi|260889735|ref|ZP_05900998.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
 gi|260860341|gb|EEX74841.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+ MSGGVDSSV A LLK  GYDVIGV ++ +  +  +   G C A +D  D   
Sbjct: 9   RRKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIA 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + + +Y  ++ + + + V   F   Y  G TP P V CN+ +KF   L    +LGA
Sbjct: 66  VAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKLGA 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +ATGHY R  ++   DGK +  M R +D  +DQ+YFL   +Q+QL  + FPLG+  K 
Sbjct: 126 DYVATGHYARI-IHEEKDGKIKSTMLRGIDDNKDQTYFLCQLSQEQLEKVLFPLGEYTKP 184

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQ 225
            +R++A +  L  A K   Q+   ++ 
Sbjct: 185 QIREIAEKYNLVTAKKKTVQESALLEN 211


>gi|71030526|ref|XP_764905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Theileria parva strain Muguga]
 gi|68351861|gb|EAN32622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Theileria parva]
          Length = 693

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 105/407 (25%), Positives = 177/407 (43%), Gaps = 49/407 (12%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
                   RV V +SGGVDSS+   L+K   +DV    L++      S   G C A  D+
Sbjct: 290 FQSPRSKKRVAVLVSGGVDSSLALWLMKSRAFDVHAFYLKV---NDLSNGPGLC-ASNDI 345

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A +VC+ + V+ +V  + + +   ++      Y  GE P P V CN  +KF + L + 
Sbjct: 346 SYAMQVCNILGVTLHVLPFSKAYSEHILSGVLDDYRKGEVPNPDVLCNSRIKFGEFLRMA 405

Query: 134 RQLGADVLATGHYIR--------------SRLYVGDDGKRRRIMCR---PMDLERDQSYF 176
              G D +A+GHY                S L           + R     D  +DQ+YF
Sbjct: 406 IDWGFDYVASGHYATLCDDFFTKEQIKSPSSLNGSTSINGYYKIKRLCLSNDTLKDQTYF 465

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           L   TQ Q+  L FP+G + K  VR+ A+ +GL   DK DS  +CF++       + +  
Sbjct: 466 LSRLTQNQMSKLIFPIGHLTKSQVREFAKTVGLPTFDKKDSFGLCFLEDLDISQYLTKSL 525

Query: 237 AGIALEGDIV-HLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSR 289
                +G IV +   +++G HNG+ N+TIGQ++ +   +        P +VV  D  ++ 
Sbjct: 526 GES--QGPIVEYETNKVIGTHNGLYNFTIGQKKTINSFLNPKHVGSTPKYVVKKDIATNT 583

Query: 290 VIVGP--RESLEVH------RIYLREINW-------LGDGLFEDAVVDGFKCFVKIRSSQ 334
           + V     +    +         ++++ W       L + +  +   D FK  VK+R + 
Sbjct: 584 LYVSSNYNDDFYTNPKGIRSSFKVKDMFWNVPDYKELINKIQSEGSDDNFKFKVKLRHTP 643

Query: 335 DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
           +     +  + D   V  +  + G+++GQ CVFY  +      +G  
Sbjct: 644 NYSQCAINFDGDEATVFLKHPDTGISTGQYCVFYADN----YCIGSA 686


>gi|225163879|ref|ZP_03726173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutaceae bacterium TAV2]
 gi|224801524|gb|EEG19826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutaceae bacterium TAV2]
          Length = 369

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 148/373 (39%), Gaps = 64/373 (17%)

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              QD+ DARRV D + +   V +  + +R+ V+      Y  G TP P + CNR +KF 
Sbjct: 1   PWQQDIEDARRVADQLGIPFRVVNLMDEYRDRVVAYLLDGYRRGLTPNPDIMCNREIKFG 60

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRR--------------------------- 160
              +  R  G   +ATGHY R       D                               
Sbjct: 61  VFRAWARDHGFTAVATGHYARRVPLSAADTAPAACASTVGASLAKPASANNAQSAIVAPS 120

Query: 161 --------------RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
                           +    D  +DQSYFL   TQ QL D RFP+GD++K  +R LARE
Sbjct: 121 GCAGFASEAPAPSAWALHEGADPNKDQSYFLALLTQAQLADARFPIGDIEKPELRRLARE 180

Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIG 265
            GL  ADK DSQ ICF+ Q K  D +++        G IV   + +I+G H G+  +T+G
Sbjct: 181 AGLATADKKDSQGICFIGQVKMQDFLRQYVPD--NPGPIVRATDQRIIGEHRGLHYFTLG 238

Query: 266 QRRGLGVAM---GEPLFVVYLDKNSSRVIV----GPRESLEVHRIYLREINW-----LGD 313
           QR+G+GV      +   V     + + + V         L    + +  + W        
Sbjct: 239 QRKGIGVPSNTDNKAYVVTGKRSDDNTLFVAFDGADAPGLFQTEVRVHSLQWNTPDGAPP 298

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFYT 369
                          ++R     +P+ +    D      ++ FE  + G+ASGQ    Y 
Sbjct: 299 AFLTSGGPGPHALEGRVRYRDPRIPLTITLTPDLAPATAHIRFETPQRGLASGQILALYA 358

Query: 370 SDSNEARVLGGGI 382
                 R+LGG +
Sbjct: 359 G----PRLLGGAV 367


>gi|217077941|ref|YP_002335659.1| tRNA methyl transferase [Thermosipho africanus TCF52B]
 gi|217037796|gb|ACJ76318.1| tRNA methyl transferase [Thermosipho africanus TCF52B]
          Length = 321

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 103/319 (32%), Positives = 168/319 (52%), Gaps = 20/319 (6%)

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           CC+  D YDA+++ +   V   V   E+ FR  VI  F S Y  G+TP PC  CN  +KF
Sbjct: 19  CCSPSDTYDAKKIAEKFGVDFKVVHLEDDFREMVINYFVSEYKRGKTPNPCFFCNDWIKF 78

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L+    + G D +A+GHY   +     +GK    + +    E+DQSYFL +  +++L 
Sbjct: 79  GVLMEKMFEDGMDYVASGHYAIIK-----NGK----LYKAKSYEKDQSYFLASIKKEKLK 129

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            +  P G+  K+ +R++A ++G+ + +K DSQD+CF+  G   + ++  N     EG I+
Sbjct: 130 KIILPNGEYTKQQIREIAEKIGIHVHNKVDSQDLCFIPDGNISEFLRENNME-FKEGLII 188

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
              G I+G H G+ NYTIGQR+ +GVA G  L+V+  D  ++ +IVG +ES    +  + 
Sbjct: 189 DTEGNIIGTHKGLANYTIGQRK-IGVATGRRLYVIKKDFKNNILIVGDKESAFSTKFTVL 247

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
           + N+L        V   F+ +VK+R     V       ++ +Y++ ++    +  GQ  V
Sbjct: 248 KPNFL------QNVSKDFEGYVKVRKKFKEVRCKAHFENERLYIETQEPIFAITPGQIAV 301

Query: 367 FYTSDSNEARVLGGGIISG 385
            Y  D +   V+  GII G
Sbjct: 302 VYGFDDS---VIVSGIIEG 317


>gi|307069664|ref|YP_003878141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Zinderia insecticola CARI]
 gi|306482924|gb|ADM89795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Zinderia insecticola CARI]
          Length = 365

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 184/374 (49%), Gaps = 24/374 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++++AMSGG+DSS+ A LLK+ GY VIG+ ++ ++    S    +C   ++  DA ++
Sbjct: 2   KKKIILAMSGGIDSSITAWLLKKKGYKVIGIFMKNWHFNNNSIFDSNC---KEFLDALKI 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGA 138
            + + +   + D+ +++R  +   F   Y     P P + CN  +KF   L+   ++   
Sbjct: 59  SEYLKIKIKILDFSKKYRKFIFNKFLKEYKKNNIPNPDILCNSIIKFKFFLNYCIKKFKI 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            ++ATGHY+R + Y     K +  + + +D ++DQSYFL++  ++ + ++ FPLGD+ K+
Sbjct: 119 KLIATGHYLRIKKY-----KNKFFLLKALDKKKDQSYFLYSLNKKNISNIIFPLGDLNKK 173

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +R +A+++     +K DS  ICF+ + K    +      I   G I  LN + + +H G
Sbjct: 174 DIRRIAKKIKFFNYNKKDSIGICFIGKNKIIKFLSYYI--IFNPGYIKLLNEKKINKHLG 231

Query: 259 IINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           I  Y IGQR+GL +         +P +V++ D  ++ + +  + +  +    +       
Sbjct: 232 INFYNIGQRKGLKIGGIKNNKKNKPWYVIFKDIKNNIIYISNKNNNFLKIKKIYIK--KI 289

Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371
           + +    + +      KI+  +      ++      +Y+ F   +  + +GQ+ + Y  +
Sbjct: 290 NFILNKKLSNKILYNCKIKHGKKISFCKIKNITPKIIYIKFLNLQKNINNGQSIIIYYKE 349

Query: 372 SNEARVLGGGIISG 385
                 L GGII  
Sbjct: 350 F----CLFGGIIKS 359


>gi|282856175|ref|ZP_06265458.1| tRNA methyl transferase [Pyramidobacter piscolens W5455]
 gi|282585934|gb|EFB91219.1| tRNA methyl transferase [Pyramidobacter piscolens W5455]
          Length = 346

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 171/367 (46%), Gaps = 31/367 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V +SGGVDS++ A  L+  GYDV    L L +    + R              R+  
Sbjct: 4   KILVGVSGGVDSALSALRLRDLGYDVTAAHLILKDGEDPTDRLRL----------ERLAR 53

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V  +  D   RF   V+ PF  +Y  G TP PCV CN  +KF  L  +  +LG D +
Sbjct: 54  H--VPVHELDCRARFCERVVRPFLDAYRKGLTPNPCVICNAALKFRALFELADRLGIDKV 111

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKKESV 200
           ATGHY R         + RR      D  +DQ+Y L     + L  L FPL  +  K  V
Sbjct: 112 ATGHYARVLK------RGRRWAIARTDSPKDQTYMLCRLPHEWLSRLCFPLSEERSKTGV 165

Query: 201 R-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258
           + +LA  +G +   + DSQ ICF++ G     ++   A      G +V  +G+ LG H G
Sbjct: 166 KNELASRLGAERLAQGDSQGICFLEGGSLERFLEDHLAAEERHIGRMVGHDGEDLGPHKG 225

Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318
           +I YT GQRRGLG++ G P FV   D  S+R+++       V  IY     W      + 
Sbjct: 226 LIFYTEGQRRGLGLSRG-PWFVARRDFASNRLLLSHGTEATVGTIYFENARW------QQ 278

Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            V  G  C V+      PVP  +   +D G  V+ ++    V+ GQA V Y  D  E  +
Sbjct: 279 EVRAGQDCLVQYCYRARPVPGRLADCHDGGGTVELQEPAGSVSIGQALVLY--DVAERVL 336

Query: 378 LGGGIIS 384
           LGGG I 
Sbjct: 337 LGGGFIK 343


>gi|213023505|ref|ZP_03337952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 238

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 16/242 (6%)

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLA 142
            +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L      LGAD +A
Sbjct: 1   GIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIA 60

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+G+++K  VR 
Sbjct: 61  TGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRK 115

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262
           +A ++GL  A K DS  ICF+ + K+ D + R     A  G I+ ++G  +G H G++ +
Sbjct: 116 IAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLMYH 173

Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314
           T+GQR+GLG+        +P +VV  D  ++ +IV        L    +  ++++W+   
Sbjct: 174 TLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHWVDRE 233

Query: 315 LF 316
            F
Sbjct: 234 PF 235


>gi|326911266|ref|XP_003201982.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Meleagris gallopavo]
          Length = 346

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 135/315 (42%), Gaps = 41/315 (13%)

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRR 161
                Y  G TP P + CN+ +KF+  L      LGAD +ATGHY R+ L   +  +++ 
Sbjct: 7   DLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADAIATGHYARTSLEDEEVFQQKH 66

Query: 162 I------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           +                  + +  DL +DQ++FL   +Q  L    FPLGD+ K  VR +
Sbjct: 67  MKRPRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVRKI 126

Query: 204 AREMGL-DIADKSD--------SQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253
           A E GL  +  K +        S  ICF+ +  +   +          G+ V + + +++
Sbjct: 127 ASEHGLHHVLKKKEACSTFLFQSMGICFIGERNFEKFLLEYLE--PQPGNFVSIEDKKVM 184

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310
           G H G   YTIGQR  L     +  FVV  D ++  + V P     +L    +    ++W
Sbjct: 185 GTHKGWFLYTIGQRARL-AGQQDAWFVVDKDVSTGDIFVAPSTDHPALYRDLLRTNRVHW 243

Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           + +    + V D   +C  + R     VP  +  N DG V+V   K    +  GQ  VFY
Sbjct: 244 IAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARALTPGQFAVFY 303

Query: 369 TSDSNEARVLGGGII 383
             D      LG G I
Sbjct: 304 KGD----ECLGSGKI 314


>gi|167751814|ref|ZP_02423941.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216]
 gi|167660055|gb|EDS04185.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216]
          Length = 448

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 3/224 (1%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+ +SGGVDSSV A LL++ G++VIG+ +  ++    +   G C    D   A  V  
Sbjct: 3   RVVIGLSGGVDSSVAAYLLQQAGHEVIGLFMINWHDTTGTLE-GDCPWHDDRLFAELVAR 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++  +  D  +++R  V+    S YA G TP P V CNR +KF   L    +LGAD +
Sbjct: 62  RLDIPFHTVDLSDQYRRRVVDYMFSEYAKGRTPNPDVLCNREIKFDVFLKEALKLGADFV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R       DG+    +    D  +DQSYFL   +Q+QL    FP+G + K  VR
Sbjct: 122 ATGHYCRKAEETAPDGRTIYKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGHLLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            +A +M L  A + DSQ ICFV +      +++     A  G++
Sbjct: 182 RIAEQMKLATAKRKDSQGICFVGKVDLPVFLQQKLK--AKTGNV 223



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP 294
            A +A        +G+ +G+HNG   YTIGQR+GLG+    E LFV+  D   + + VG 
Sbjct: 298 LAALAAPYRYTVRDGKKIGQHNGAHFYTIGQRKGLGIGGRKESLFVLATDVEQNVIYVGE 357

Query: 295 ---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349
                 L    + +   E++W+ D L E    +  +  V+IR  Q      +    D  Y
Sbjct: 358 GDNHPGLYRRALRIAPGELHWI-DPLRELKTGESRRFDVRIRYRQPLQGAELFIRPDAAY 416

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           + F++ + G+  GQ   +Y  D     ++G G+I+
Sbjct: 417 LLFDEPQRGITPGQFAAWYDGD----ELVGSGVIA 447


>gi|239906368|ref|YP_002953109.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus
           RS-1]
 gi|239796234|dbj|BAH75223.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus
           RS-1]
          Length = 356

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 114/367 (31%), Positives = 160/367 (43%), Gaps = 22/367 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGG DS +   LL+  G+DV  +                  A  +  DA+  C
Sbjct: 1   MRIAVAVSGGSDSLLALGLLRAAGHDVTALHAHFLPPGD------KALALAEAIDAQ--C 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V     D  + FR  VI PFA++YAAG TP PC  CNR +KF  LL      GA+ 
Sbjct: 53  RALGVPFAAVDLSQEFRARVIAPFAAAYAAGRTPNPCAACNRDMKFGLLLDAALARGAEA 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGH+ R +            + R  D  RDQSYFL     + L    FPL   +K   
Sbjct: 113 IATGHFARVQ-----QTPTGPALFRGADDSRDQSYFLSLVPGKSLARAVFPLAGRRKAEH 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
                E+ L     S+S++ICFV    Y   ++     ++  G IV  +   LG H G+ 
Sbjct: 168 PAALAELLLTPPLPSESREICFVPGDDYRAFLQGEGFPLSGPGPIVLADSTRLGTHQGLW 227

Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            +TIGQR+GLG+A  EPL+V+  D  ++ +IVG +  L          N L         
Sbjct: 228 RHTIGQRKGLGIAYSEPLYVIDKDPAANALIVGVKAELAATLCRTGPANCLVQPEHWPEA 287

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                   +      P P   +   + G+ + F         GQ  V Y +D    RVL 
Sbjct: 288 -----VLAQTCYRMKPRPATARLTAEGGLDITFADPVARPTPGQVAVLYDAD---GRVLA 339

Query: 380 GGIISGS 386
           GG I  +
Sbjct: 340 GGEIIAA 346


>gi|313157065|gb|EFR56495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alistipes sp. HGB5]
          Length = 438

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV+ +SGGVDSSV A LLKR G+DV G+ +  ++    +   G C    D   A  V  
Sbjct: 3   HVVIGLSGGVDSSVAAYLLKRQGHDVTGLFMINWHDTTGTLE-GDCPWHDDRVFAELVAK 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++   V D    +R  V+    + Y  G TP P V CNR +KF   L    +LGAD +
Sbjct: 62  RLDIPLRVVDLSADYRTRVVDYMFAEYEKGRTPNPDVLCNREIKFDVFLREALKLGADFV 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R    V  DG+    +    D  +DQSYFL   +Q+QL    FP+GD+ K  VR
Sbjct: 122 ATGHYCRKAEEVLPDGRTVFKLLAGADPNKDQSYFLCQLSQEQLRYALFPIGDLLKPEVR 181

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            +A + GL  A + DSQ ICFV +      +++     + +G++
Sbjct: 182 RIAAKQGLATAKRKDSQGICFVGKVDLPAFLQQ--KLASKKGNV 223



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 11/152 (7%)

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGP--- 294
           +A        +G+ +G HNG   YTIGQR+GLG+    E LF++  D   + + VG    
Sbjct: 291 LAAPWRYTVRDGKKIGEHNGAHFYTIGQRKGLGIGGRRESLFILATDTAQNVIYVGEGDA 350

Query: 295 RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352
              L    +++   EI+W+       +     +  V+IR  Q      +   D G Y+ F
Sbjct: 351 HPGLWRPALHIAPGEIHWVNPARAL-SPGQSARFSVRIRYRQPLQDATLFMRDRGAYILF 409

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           ++ + G+  GQ   +Y  D     ++G G+IS
Sbjct: 410 DQPQRGITPGQFAAWYDGD----ELVGSGVIS 437


>gi|332179300|gb|AEE14989.1| tRNA methyl transferase [Thermodesulfobium narugense DSM 14796]
          Length = 337

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 178/367 (48%), Gaps = 32/367 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V +SGG+DS   A LL+  G+DVI + ++L+++ +   R            A+ +
Sbjct: 2   NKRVIVGISGGIDSFYTAFLLRNSGFDVICLYIKLFDNHETFFR------------AKML 49

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + V    +D  + F+  V+    +    G TP PC  CN  +KF  L  +      D
Sbjct: 50  GELLGVKFEFYDAIKEFKKEVVDRSINMTLLGYTPNPCAFCNMKIKFRILEKIRSDFNYD 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            ++TGHY++      DD  R   + R  D ++DQSYFL       L +  FPLGD  K+ 
Sbjct: 110 YISTGHYVKIFH---DDITR---IFRGFDEKKDQSYFLALVPSIYLKNAIFPLGDFTKKY 163

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           V+ + +E      D S SQD+CFV++G Y  +++ I       G  ++ + +++  H G 
Sbjct: 164 VKKVMQEKYSFWKDISSSQDLCFVKKG-YKKLIQDICGVKV--GKFLYKD-KVVANHLGS 219

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319
             YTIG+ RGLG      L+V  L+   + V +  RE      I + ++N+  +      
Sbjct: 220 YLYTIGESRGLGHKEPVKLYVESLNHEKNEVYLNTREFCYKSSIIVTDLNFFNELPD--- 276

Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379
                +C V+IR    PV   +Q N++ ++V F +       GQ   FY+ D     +LG
Sbjct: 277 -----RCLVQIRYQAKPVICDIQFNENKLHVSFHEKVFAPTPGQIASFYSLD--NRELLG 329

Query: 380 GGIISGS 386
           GGII G+
Sbjct: 330 GGIIIGT 336


>gi|315927736|gb|EFV07063.1| Putative tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 269

 Score =  293 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 161/288 (55%), Gaps = 22/288 (7%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDS+V A  LK  G++VIG  ++L+               +++    +V + + + 
Sbjct: 1   MSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIP 52

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
           +++ D +E F+N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY
Sbjct: 53  YHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHY 112

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR- 205
            R    +         +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A  
Sbjct: 113 ARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFAST 163

Query: 206 -EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264
            E+    A + +S +ICFV+   Y  V+ +      + G+++  +G+++G+H G ++YTI
Sbjct: 164 IEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEGYMHYTI 221

Query: 265 GQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311
           G+RRG  V    EP FV+ ++   +++IVG +E L++    L+ IN L
Sbjct: 222 GKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLL 269


>gi|256372326|ref|YP_003110150.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008910|gb|ACU54477.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 341

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 172/361 (47%), Gaps = 29/361 (8%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVVAMSGGVDSSV A + +  G+DVIGVTL+L  +  A  R   CC+  DV DAR V  
Sbjct: 3   RVVVAMSGGVDSSVAALMAREAGHDVIGVTLRL--TEAAGDR--GCCSVGDVEDARTVAA 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++H V D    F  AV+ P+  ++  G TP PC+ CNR VK + L +  ++LGA  L
Sbjct: 59  LLGINHIVADMRAEFHRAVVEPYLDAHRRGWTPNPCMSCNRYVKVTALAAWAQRLGASRL 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY         DG  R ++ R  D  +DQSY L     + L  L  PLG++ K+ VR
Sbjct: 119 VTGHYATVL-----DGS-RPMLVRGRDRRKDQSYVLADVPPEVLARLWLPLGELSKDEVR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A   GL + DK DSQD+CFV  G+    V        +   +  + G+ +G       
Sbjct: 173 TRAHAAGLPVWDKRDSQDVCFVPHGR-AAFVSAAVGLTDVP--VRDVAGEPVGVTLPFEL 229

Query: 262 YTIGQR-RGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320
            T+GQR R  G +   P +V+   + +  V VG    L    +   +   + D +     
Sbjct: 230 ATVGQRLREPGRSGSTPRYVIAKSRTA--VRVGSASDL----LVAAQP--IEDLVSYVPR 281

Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
            +  +  V+  +    +P  +        V F++    VA GQ  V Y     + RVL  
Sbjct: 282 SEPLRGLVQTAAHGVALPGSLS----EAAVAFDEPARRVAPGQRVVLYD---AKDRVLAS 334

Query: 381 G 381
            
Sbjct: 335 A 335


>gi|124516570|gb|EAY58078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1
           [Leptospirillum rubarum]
          Length = 361

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 170/371 (45%), Gaps = 29/371 (7%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----------CCAGQDVYD 75
            +SGGVDS+V A LLK  G+DV G  +++++   +  R G           CC    +  
Sbjct: 2   GLSGGVDSTVAALLLKEAGFDVYGAIVEIWSENSSGGRSGEEREKPWFERACCH---LPM 58

Query: 76  ARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            + +C+  +++ +   D ++ F+  ++  F   Y  G TP PC DCN  +K   L+    
Sbjct: 59  VKFLCEEYLHIPYVQIDQKQNFQEKIVDVFREGYHNGVTPNPCTDCNAEIKIKTLIDWAE 118

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           Q     +ATGHY ++   V     R   + + +D ++DQSYFL    +  L  + FPLG 
Sbjct: 119 QQKISYVATGHYAKNHYSVQ---NRLWGIAQALDRKKDQSYFLSRVPEHVLRKVLFPLGH 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQIL 253
             K+ VR+ AR   + + +  ++ + CF+        +KR      +    +  + G+ +
Sbjct: 176 WTKDKVREFARSKKIPVEEMVENMEACFLSAKNVTSFLKREEEVHSSGNWKVTDMKGEKI 235

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G     I  T GQR+G+GVA  E ++V  +D ++  VI+G ++ +      +R+      
Sbjct: 236 GEIPTGIGLTKGQRKGIGVANAERMYVKKVDVHNKVVIMGSKKDILNRNFRIRDP---LG 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            LF+  +      +VK RS  + VP         +  +      GV  GQ   FY  +  
Sbjct: 293 PLFQKKIKGNL--YVKFRSVMEAVPCI---EKGNLRFELLNENDGVTPGQIAAFYDDE-- 345

Query: 374 EARVLGGGIIS 384
              VLG GI+ 
Sbjct: 346 -QMVLGSGILE 355


>gi|206603442|gb|EDZ39922.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase 1
           [Leptospirillum sp. Group II '5-way CG']
          Length = 361

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 103/371 (27%), Positives = 177/371 (47%), Gaps = 29/371 (7%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLY----------NSRKASKRKGSCCAGQDVYD 75
            +SGG+DS+V A LLK  G+DV G  ++++          + R+    + +CC    +  
Sbjct: 2   GLSGGIDSTVSALLLKEAGFDVYGAIVEIWSENSAGGQSGDEREKPWFERACCH---LPM 58

Query: 76  ARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            + +C+  +++ +   D ++ F+  ++  F   Y  G TP PC DCN  +K   L+    
Sbjct: 59  VKFLCEEYLHIPYVRIDQKQNFQKKIVDVFREGYHNGVTPNPCTDCNAEIKIKTLIDWAE 118

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           Q     +ATGHY R+   V     R   + + +D ++DQSYFL    +  L  + FPLG 
Sbjct: 119 QQKISYVATGHYARNHYSVR---NRLWGIAQALDRKKDQSYFLSRVPEHVLRKVLFPLGH 175

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQIL 253
             K+ VR+ AR   + + +  ++ + CF+        +KR      +   ++  +NG+ +
Sbjct: 176 WTKDKVREFARSKKIPVEEMVENMEACFLSAKNVTSFLKREEEAHSSGNWNVTDINGEKI 235

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
           G     I  T GQR+G+GVA  E ++V  +D  +  VI+G ++ +      +R+      
Sbjct: 236 GEIPTGIGLTKGQRKGIGVANSERIYVKKVDVQNKVVIMGSKKDILNRNFRIRDP---LG 292

Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373
            LF+  +      FVK RS  + VP  +++ D  +  +      GV  GQ  VFY  +  
Sbjct: 293 PLFQKKITGNL--FVKFRSVMEAVPC-IEKGD--LRFELSNENDGVTPGQIAVFYDDE-- 345

Query: 374 EARVLGGGIIS 384
              VLG GI+ 
Sbjct: 346 -QMVLGSGILE 355


>gi|218506374|ref|ZP_03504252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli Brasil 5]
          Length = 229

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 138/220 (62%), Positives = 172/220 (78%)

Query: 93  EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLY 152
            +RFR  VI PFA SY AGETP+PCV CN+TVKF+DLL+  ++LGAD LATGHYIRSR  
Sbjct: 10  RKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHYIRSRPN 69

Query: 153 VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
              +   RR + RP D +RDQSYFLFATTQ+Q+  LRFPLG + K   R LA EMGL +A
Sbjct: 70  PSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYLRFPLGGLPKAETRRLAEEMGLVVA 129

Query: 213 DKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV 272
            K+DSQDICFV QGKY D++ ++    AL G+IVHL+G++LG H GI+++TIGQRRG+G+
Sbjct: 130 KKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHLDGRVLGSHEGILHFTIGQRRGIGI 189

Query: 273 AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312
           A GEPL+VVYLD  S RVIVGP+E+LE HR+YLR++NWLG
Sbjct: 190 ATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDVNWLG 229


>gi|126642475|ref|YP_001085459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii ATCC 17978]
 gi|126388359|gb|ABO12857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii ATCC 17978]
          Length = 265

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 20/263 (7%)

Query: 136 LGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LGAD +ATGHY R +       G+    + R +D  +DQ+YFL A   +++    FP+G+
Sbjct: 3   LGADFIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGE 62

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254
           ++K  VR +A E+ L  A K DS  ICF+ + ++ D +K+     A  G IV  NG+ +G
Sbjct: 63  IEKPEVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVG 120

Query: 255 RHNGIINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306
            H+G++ YT+         G+  A     FV++ D  ++R++VG       ++  +++  
Sbjct: 121 EHHGLMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSE 180

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQ 363
            I+W+     ++   +G +C  K R  Q      V  +++   GV V+F++ +  V  GQ
Sbjct: 181 AIDWVAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQ 238

Query: 364 ACVFYTSDSNEARVLGGGIISGS 386
           + VFY+ +      LGGG+I  +
Sbjct: 239 SVVFYSDEV----CLGGGVIHHT 257


>gi|323355773|gb|EGA87587.1| Slm3p [Saccharomyces cerevisiae VL3]
          Length = 349

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 160/330 (48%), Gaps = 22/330 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L     +
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDE 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L  L  P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFV 328
            ++   +R  N+   G  ED +    K  V
Sbjct: 319 ALYSDTIRIENFSSLGPREDTINAFPKLLV 348


>gi|323334236|gb|EGA75618.1| Slm3p [Saccharomyces cerevisiae AWRI796]
          Length = 362

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 158/322 (49%), Gaps = 22/322 (6%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYD 75
             K   V+VAMS GVDSSV AAL   +  +  GV +Q ++  ++    G   C  +D  D
Sbjct: 23  PAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRD 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             RV   +N+     ++E+ +   V  P    Y+ G TP P + CN+ VKF  L     +
Sbjct: 83  VNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDE 142

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   L TGHY R    +  +GK    + R +   +DQSY+L       L  L  P+
Sbjct: 143 KYGTGNYWLVTGHYARVMQEM--NGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPI 200

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLN 249
           G + K  VRDLA+  GL  A+K DSQ ICFV   Q GK+ + +K      +  GDI+ ++
Sbjct: 201 GHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVD 258

Query: 250 -----GQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESL 298
                    GRH+G+ +YTIGQ+ G+ +   +P      FV    ++++ + IV  R++ 
Sbjct: 259 PQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNP 318

Query: 299 EVHRIYLREINWLGDGLFEDAV 320
            ++   +R  N+   G  ED +
Sbjct: 319 ALYSDTIRIENFSSLGPREDTI 340


>gi|296415367|ref|XP_002837361.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633226|emb|CAZ81552.1| unnamed protein product [Tuber melanosporum]
          Length = 512

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/471 (22%), Positives = 186/471 (39%), Gaps = 107/471 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNS------------ 57
           + + +P D ++ +AMS GVDSSV AALL R G+   +++   +  ++             
Sbjct: 48  EPNVSPHD-KIFIAMSSGVDSSVAAALLLRSGHPRENLLPFYMANWSPSANPDPIPPPPS 106

Query: 58  ------------RKASKRKGSCCAGQDVYDARRVCDTINVSHYV-FDYEERFRNAVIVPF 104
                       R  S      C  ++  D + VC  +++   +  ++E+ +   V VP 
Sbjct: 107 LPGRARRNRASTRPQSNEGSLKCTEREFNDVKDVCRALDLPEPICMNFEKEYWCEVFVPM 166

Query: 105 ASSYAAGETPLPCVDCNRTVKFSDLLSVTR------------QLGADVLATGHYIRSRLY 152
              Y  G+TP P V+CNR +KF  ++   R            +     LATGHY     +
Sbjct: 167 LEMYRCGKTPNPDVECNRHIKFGAVIKRLRDEFRRRWEGVTEKGSKWWLATGHYAHILYH 226

Query: 153 VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREMGLD 210
           +     +   + R +D+ +DQ+++L    +  L  L FPLG     K  V+ LARE+ L 
Sbjct: 227 IP---TKSYHLLRSIDINKDQTFYLSTLHRDVLSRLLFPLGSYGLSKPGVKSLARELLLP 283

Query: 211 IA-----DKSDSQDICFVQ------QGKYFDVVKRINAGIALEGDIV------------- 246
                  ++ +S  +CFV+      +  +   +          GD+V             
Sbjct: 284 GWRPGQTERPESMGLCFVEPAGGKGKTGFRRFLSGYLE--PEPGDVVIGPSKKYPGGGES 341

Query: 247 ----HLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSR--VIVGPR 295
                  G ++G+H G+ + TIG+R    +    P      +V   ++  +   ++ G  
Sbjct: 342 EGACAPEGSVVGKHAGLWHATIGERARFQLPQASPEYRGKWYVSRKNRELNTLEIVRGQD 401

Query: 296 ES-LEVHRIYLREINWLGDGLF----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--- 347
            + L    + + +  WLGD       E +  +G     + R  Q P+ V       G   
Sbjct: 402 NARLYGKGMVVEKWRWLGDDAADIVRERSASNGRGLVTQFRHRQIPLKVSSVEQPGGPGY 461

Query: 348 ------------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
                       + + F+   + +A GQ+   +  D    R LGGG+I  +
Sbjct: 462 RPCSEGNEPAPALKIIFDSPAMAIAPGQSAALWFRD----RCLGGGVIRDA 508


>gi|164663299|ref|XP_001732771.1| hypothetical protein MGL_0546 [Malassezia globosa CBS 7966]
 gi|159106674|gb|EDP45557.1| hypothetical protein MGL_0546 [Malassezia globosa CBS 7966]
          Length = 346

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 33/353 (9%)

Query: 52  LQLYNSRKASKRK-------GSCCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVP 103
           ++ +++                C   ++ +D + VC  +  +   + D    +   V  P
Sbjct: 1   MRNWSTADEHGIMHGGSGGAMGCDWQREWHDVQAVCRHLGGMQVEMIDLSRDYWVHVFEP 60

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVT--RQL-GADVLATGHYIRSRLYVGDDGKRR 160
               ++ G TP P V+CN+ +KF  L+     + L  A  LATGHY R    + +     
Sbjct: 61  ALGQWSDGTTPNPDVECNKFIKFGALMDRVVPKSLIPATWLATGHYARIAPRI-EHTHIY 119

Query: 161 RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDI 220
            ++ R  D  +DQS+FL + +  +L    FPLGDM K  VR LAR + L   +KS+S  +
Sbjct: 120 PVVRRAADPTKDQSFFLSSVSSSRLDRSLFPLGDMHKSDVRSLARSLALPTCEKSESMGL 179

Query: 221 CFVQQGK-----YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275
           CFV +       +   + +  A  A  G  V   GQ LG H G+   TIGQR  +     
Sbjct: 180 CFVGERGSGAHAFARFLDQYVANEA--GAFVTPEGQYLGMHRGLHTLTIGQRARIS-GKP 236

Query: 276 EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRS 332
           +  +V   D  + ++IV P      L+   +     +W+      D      +   ++R 
Sbjct: 237 QRYYVARKDPVTRQIIVVPSKSHPMLQCTSLQSTVFSWVTGVPVLDT-----QLLAQVRY 291

Query: 333 SQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
            Q+ VP FV+ +  DGV+V+F  S   V+ GQ  V Y  +      LG G I 
Sbjct: 292 RQNAVPCFVRAHGLDGVHVEFTTSVEAVSPGQTVVLYDGE----LCLGSGTID 340


>gi|223942189|gb|ACN25178.1| unknown [Zea mays]
          Length = 329

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 139/289 (48%), Gaps = 20/289 (6%)

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
             + Y  G TP P V CN  +KF   L     LG D +A+GHY        ++ +   ++
Sbjct: 1   MINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDYIASGHYAHVVHPSAENTEAPSVL 60

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223
               D  +DQ+YFL   +Q QL  L FPLG + K+ VR LA +MGL    + DSQ ICF+
Sbjct: 61  QLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEVRRLATQMGLPNQGRKDSQGICFL 120

Query: 224 QQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282
            + K+ + V+R       EG I+   +G  LG H G   YTIGQR+GL +  G P +VV 
Sbjct: 121 GKVKFSEFVERHIGE--KEGIILEAESGDYLGIHRGFWFYTIGQRQGLRLPGG-PWYVVE 177

Query: 283 LDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            D  ++ V V     SL+  R    +  +NW  +        +  +   K+R S +    
Sbjct: 178 KDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNC----GPGNNEQLKCKVRHSPEFHDC 233

Query: 340 FV-----QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            +     + N D + V   + + G+A+GQ   FY+ +      LG GII
Sbjct: 234 TLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYSENV----CLGSGII 278


>gi|303281422|ref|XP_003060003.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458658|gb|EEH55955.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 311

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/318 (30%), Positives = 150/318 (47%), Gaps = 31/318 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V +SGGVDS+V A +LKR GYDV+GV ++ ++  + +   G C   +D  DA  V  +
Sbjct: 1   IAVGISGGVDSAVTAWILKRAGYDVVGVLMRNWDEAEETG--GECAFEKDQRDAAAVARS 58

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140
           + +     D+ + + +AV  PF   +  G  TP P + CNR +KF  LL      + ADV
Sbjct: 59  VGIELREVDFVKEYWHAVFQPFLRDFDGGASTPNPDLACNRHIKFGSLLKHCLLDVKADV 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L TGHY   ++  G +G     +    D E+DQSYFL +  Q+ L +  FPLG + K  V
Sbjct: 119 LCTGHYA--KIVRGPNG--VFCLHTAEDKEKDQSYFLASVKQEALRNACFPLGWLTKTEV 174

Query: 201 RDLA---REMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI------------ALEGD 244
           R +A    ++   +  +  S+ ICF+ +   + + V                   A  G 
Sbjct: 175 RAIAAGPAKLPSAVTSRRSSRGICFIGRKKNFGEFVHEYLPEEGRTSEASATDSDAASGA 234

Query: 245 IVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS--RVIVGP---RESL 298
            V  ++G ++G H G+  YT GQ   +G A   P FVV  D  +    V V P     +L
Sbjct: 235 FVSVVDGAVVGAHKGLARYTCGQGARVGGASA-PWFVVGKDSRAGVTNVYVAPGSDHPAL 293

Query: 299 EVHRIYLREINWLGDGLF 316
            V    +    W+   L 
Sbjct: 294 FVATAAVARCFWVEGKLP 311


>gi|312879199|ref|ZP_07738999.1| tRNA methyl transferase [Aminomonas paucivorans DSM 12260]
 gi|310782490|gb|EFQ22888.1| tRNA methyl transferase [Aminomonas paucivorans DSM 12260]
          Length = 352

 Score =  278 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 176/360 (48%), Gaps = 26/360 (7%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++  SGGVDS   A LL+R+GY                   G    G     ARR  + +
Sbjct: 7   LLLASGGVDSCAAAVLLRREGYL--------PTLVTLLLLPGDTPEGPGPGRARRAAERL 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VL 141
           ++ H + D  E F   V+ PF  +Y  G TP PC DCN  +KF   L+    L      +
Sbjct: 59  DLPHRILDLREPFAREVVAPFREAYLRGRTPNPCADCNGRIKFRAALAAAETLLGADVPV 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATGHY R     G     R  + R  D +RDQSYFL       L  L FPLGD+ KE  R
Sbjct: 119 ATGHYARILREGG-----RATLARGRDGKRDQSYFLAGLPSSLLSRLLFPLGDLSKEDAR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
            LARE GL+ A+  DS ++CFV  G Y    K +      EG +V  +G++LG H G+ N
Sbjct: 174 RLAREAGLEAAETPDSMELCFVPGGDYR---KLLGPEAFREGPVVDPSGRVLGTHEGVGN 230

Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321
           +T GQR+GLGV+  EPL+V  +D   +RV V  RE+L  H +    +N     L  +A+ 
Sbjct: 231 FTRGQRKGLGVSSPEPLYVREVDGGRNRVTVDRREALLTHLVRGGGVN----VLIPEALR 286

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380
              K F K+RS  +P P  ++  D   + V F + +   A GQ  V Y     + RV+ G
Sbjct: 287 GKTKLFGKVRSQGEPGPCSLESWDGAFLTVRFHQPQFAPAPGQRLVLYDG---QGRVVAG 343


>gi|213401743|ref|XP_002171644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Schizosaccharomyces japonicus yFS275]
 gi|211999691|gb|EEB05351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Schizosaccharomyces japonicus yFS275]
          Length = 414

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/414 (21%), Positives = 141/414 (34%), Gaps = 91/414 (21%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           ++ +    +    G C + +D    ++V + + +     ++E  +   V  P    Y  G
Sbjct: 1   MRNWLDESS---PGGCTSERDWTLVKKVGEKLGIPVTRLNFEHDYWQRVFEPTLEHYRRG 57

Query: 112 ETPLPCVDCNRTVKFSDLLSV-----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRP 166
            TP P V CNR VKF  L             A  +ATGHY R+ +    +      + RP
Sbjct: 58  WTPNPDVLCNREVKFGALFEHLSHVMADSKRAWWVATGHYARTCIARDTNET---CLLRP 114

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQ 225
            D ++DQ+ FL     Q L    FPL    KE V+  A   GL + A + +S  +CFV  
Sbjct: 115 TDAKKDQTLFLCNIPYQALQRTIFPLWQHTKEQVKREAMLHGLEESATRPESMGLCFVSP 174

Query: 226 GK----YFDVVKRINAGIALEGDIVHLNGQILG---RHNGIINYTIGQRRGLGVAMGE-- 276
                 + + +       +     V   G  +G   R  GI ++T+G++ GL +A  +  
Sbjct: 175 RNIRGHFRNFLAEYLEPSSDPLR-VMFRGVCVGVYPRDKGIWSFTVGEKCGLSLAALQRV 233

Query: 277 ---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED-AVVDGFKCFVK 329
              P +V   D  ++ V V P      L        E  W            D   C V+
Sbjct: 234 SQLPWYVWKKDVATNAVHVCPGYRHPLLFSRAATCSEWGWASPWCKRAFEGADDVACTVR 293

Query: 330 IRSSQDP---------VPVFV--------------------------------------- 341
           IR  Q P         VP                                          
Sbjct: 294 IRHQQQPGMSLGERYRVPCTAVDHAKRFSENPSRPSALNHFARQHCTTLRHICPTLPSRR 353

Query: 342 ----------QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
                     +   D + + F + + G+A GQ    Y  +      +GGG I  
Sbjct: 354 VLTLQVPAHFRSRPDCIRLQFHQPQRGIAPGQHVAVYVDN----LCVGGGPIVS 403


>gi|328859131|gb|EGG08241.1| hypothetical protein MELLADRAFT_35034 [Melampsora larici-populina
           98AG31]
          Length = 345

 Score =  275 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 99/342 (28%), Positives = 158/342 (46%), Gaps = 28/342 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77
           + +AMSGGVDSSVVA+LL R GY   +  + ++ +      K K     C   +D  D +
Sbjct: 12  ISIAMSGGVDSSVVASLLIRSGYHHRLRAIFVKNWMDDSDVKVKDQGIRCQWKRDWDDVQ 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VCD + +   + D  + + N V  P    + +G TP P V CNR +KF  L     +  
Sbjct: 72  SVCDHLKLPCQLIDLSKAYWNQVWEPCLKIWESGGTPNPDVMCNRQIKFGILAEHLLKSD 131

Query: 138 ADVL-ATGHYIRSRLYVGDDGKRRRIMCRPM-DLERDQSYFLFATTQQQLCDLRFPLGD- 194
              + ATGHY R +       +    + +   +  +DQSY+L     + L    FPLG+ 
Sbjct: 132 PQTILATGHYARLKHTQ----EGTTELHQAFSETSKDQSYYLSTIPSKILKRCLFPLGEN 187

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIV--HLN 249
              KE VR +A+E+ L  A K++S  IC V+    ++ + +     G   +G+IV     
Sbjct: 188 GFNKELVRKIAKEVRLPNALKNESMGICLVEPRIKRFEEFLGTQIEG--RKGEIVLFDDQ 245

Query: 250 GQILGRHNGIINYTIGQRRGLG--VAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIY 304
             ++G H GI NYTIGQR  +    A  + L+V   D   +RV V P      L   +I+
Sbjct: 246 KTVVGEHRGIWNYTIGQRCRINKPNAFPQKLYVAKKDLKLNRVFVVPHHDHPALYTRKIF 305

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRND 345
             +  W+             +   ++R  + +P+P  V  ++
Sbjct: 306 TYDFQWINPPSLSQT---SLELSARVRTGTLEPIPCEVNFSN 344


>gi|167753698|ref|ZP_02425825.1| hypothetical protein ALIPUT_01979 [Alistipes putredinis DSM 17216]
 gi|167658323|gb|EDS02453.1| hypothetical protein ALIPUT_01979 [Alistipes putredinis DSM 17216]
          Length = 339

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 160/370 (43%), Gaps = 37/370 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD RV++  SGG+DS     LL+  GY V  +TL +                  +  AR 
Sbjct: 2   KDNRVLLGFSGGIDSFAAVGLLQAAGYHVTALTLDMRGDSAL------------LEKARL 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +   +    ERF   V+  F  SY  G TP PC  CN  +K+  L +    LG 
Sbjct: 50  RAGALGIPWRMRSVRERFEREVVDYFTDSYFRGCTPAPCTRCNSRIKWPCLAAEADALGI 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGHY R           +R + R  D  +DQSY+L+   Q+ L  +  P+G + K 
Sbjct: 110 RHIATGHYFRI-----TSAGGKRYVTRAADNRKDQSYYLWDLPQEILDRVLTPMGTVIK- 163

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHN 257
             R++  E+    AD+ +S  +CF++     D ++  +   A   G I+   G  LG H+
Sbjct: 164 --RNIVEEL----ADRRESMGVCFLEGRPCRDFLRSRDKTEALRPGPIIDSAGHRLGTHD 217

Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           G   YTIGQ++GL +  G    VV +D  ++R++ G  + L    + + E   +      
Sbjct: 218 GAALYTIGQKKGLDLPPG--WAVVAIDTAANRIVAGEEKLLLHRTLEVGECRLI----ES 271

Query: 318 DAVVDGFKCFVKIR--SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375
           D V         IR           V     G+ ++ E      A+GQ  V Y  +    
Sbjct: 272 DEVFGARDIRAVIRGIGRNPEGYAAVFPAASGIRIELEDPAWAPAAGQPVVLYRGE---- 327

Query: 376 RVLGGGIISG 385
           RV+GGGI+  
Sbjct: 328 RVVGGGILER 337


>gi|330955382|gb|EGH55642.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7]
          Length = 177

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 8/184 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+R R     D   R  + + +D  +DQSYFL A   +Q+    FP+G+++K  V
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173

Query: 201 RDLA 204
           R +A
Sbjct: 174 RAIA 177


>gi|312971270|ref|ZP_07785448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
 gi|310336472|gb|EFQ01658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
          Length = 234

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 9/196 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+ DA+ VC
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139
           D + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LGAD
Sbjct: 63  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  
Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177

Query: 200 VRDLAREMGLDIADKS 215
           VR +A ++GL  A K 
Sbjct: 178 VRKIAEDLGLVTAKKK 193


>gi|330722024|gb|EGG99950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC2047]
          Length = 222

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 19/231 (8%)

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG 226
           MD  +DQSYFL A  +QQL    FP+G+++K  VR++A +  L   +K DS  ICF+ + 
Sbjct: 1   MDKNKDQSYFLHAVPEQQLAKTFFPIGELEKPRVREIAEQHDLVTHNKKDSTGICFIGER 60

Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV 281
           ++ D +K+     A  GDIV  + +++G+H G++ +TIGQR+GLG+   +     P +V 
Sbjct: 61  RFRDFLKQYIP--AQPGDIVTPDNEVIGKHQGLMYHTIGQRQGLGIGGMQGKDESPWYVA 118

Query: 282 YLDKNSSRV--IVG-PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338
               +++++  + G    +L    +    ++W+            F+C  KIR  Q    
Sbjct: 119 DKYLDTNQLLAVQGKNHPALFAPSLLAEGVSWINGS----PPAKQFRCTAKIRYRQSDQR 174

Query: 339 VFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
             V   D+G  +V F++ +  VA GQ+ VFY  +      LGGG+I+ + +
Sbjct: 175 CEVVVKDNGHCHVIFDEPQRAVAPGQSVVFYIDEV----CLGGGVITEAIK 221


>gi|220903867|ref|YP_002479179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868166|gb|ACL48501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 425

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 168/422 (39%), Gaps = 78/422 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V VA+SGGVDS     +L++ GY V+ +  L L ++        +               
Sbjct: 21  VAVAVSGGVDSLCALVMLQQAGYSVLALHGLFLPDAAPEPPPGLAAACAALG-------- 72

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V  +V D    F   V+ PFA++YAAG TP PC  CNR +KF  L      LGA  L
Sbjct: 73  ---VPLHVADLRPVFEREVLAPFAAAYAAGRTPNPCALCNRAIKFGALFDAAMGLGAQRL 129

Query: 142 ATGHYIRSRLYVGD-------------------------------------DGKRRRIMC 164
           ATGHY R      D                                      G    ++ 
Sbjct: 130 ATGHYARLAAAPEDAVTALLPEGLDPAASRDNARISAVDNGCGCTEGRHGVSGAHPPLLA 189

Query: 165 RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ 224
              D  +DQSYFL    +++L    FPL +  K   R++    GL +   ++SQDICF  
Sbjct: 190 AAHDAAKDQSYFLSLVPRERLARACFPLAEQDKARSREIVARAGLAVPVPNESQDICFAP 249

Query: 225 ------------QGKYFDVVKRINAGIAL----EGDIVHLNG----QILGRHNGIINYTI 264
                          Y   ++R     AL     G +   +     + + RH G+  YT 
Sbjct: 250 VVSGAATAGLAAADAYRPFLERRWQKAALVPPGPGPVFLRDAAGGLREIARHKGLWRYTE 309

Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324
           GQR+GLG+A  EPL+V+  D  ++ ++VGPR  L V R      N     L +       
Sbjct: 310 GQRKGLGIAHSEPLYVLAKDGTANALVVGPRALLGVTRCLTGAAN---VSLPQQYWTG-- 364

Query: 325 KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           +  V++R  Q P P  V  +  G + + F + +   A GQ    Y        VL  GI+
Sbjct: 365 ELLVRLRHRQKPSPAVVTLDASGRLDICFAEPQFPSAPGQVAAVYDG---RGHVLAAGIV 421

Query: 384 SG 385
             
Sbjct: 422 ET 423


>gi|213850106|ref|ZP_03381004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 209

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 19/212 (8%)

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
            +Q+    FP+G+++K  VR +A ++GL  A K DS  ICF+ + K+ D + R     A 
Sbjct: 1   HEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQ 58

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP-- 294
            G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV    
Sbjct: 59  PGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH 118

Query: 295 -RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDF 352
               L    +  ++++W+      +      +C VK R  Q  +P  +   +DD + V F
Sbjct: 119 EHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIF 174

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           ++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 175 DEPVAAVTPGQSAVFYSGEV----CLGGGIIE 202


>gi|256090031|ref|XP_002581029.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Schistosoma mansoni]
 gi|238666809|emb|CAZ37268.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt
           ransferase,putative [Schistosoma mansoni]
          Length = 312

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 153/308 (49%), Gaps = 32/308 (10%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
             LN +   K+     V  A+SGGVDS+V A LLK+ G+ V GV +  ++S      K  
Sbjct: 13  PNLNCITYVKSIHS--VACAISGGVDSAVSAYLLKKKGFQVKGVFMTNWDSLD---EKID 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C   +D  DA+ VCD + +  +  ++ + + N V +P   SY  G TP P + CNR VKF
Sbjct: 68  CSLDKDRQDAQFVCDYLGIPFFEKNFVKEYWNYVFLPLIKSYEQGATPNPDILCNRFVKF 127

Query: 127 SDLLSVTRQ---------------LGADVLATGHYIRSRL-----YVGDDGKRRRIMCRP 166
           + L     +               L AD +ATGHY ++       Y  D+ + R  + R 
Sbjct: 128 NLLTRAVLKSKNQCADDDSQASSNLAADAIATGHYCQNSFGNYLQYRKDNVEAR--LLRS 185

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQ 225
           +D  +DQ+++L   + ++L    FP+GD+ K  V+ +A+++GL  I  + +S  +CF+ +
Sbjct: 186 VDRVKDQTFWLSTISHKELPYCMFPVGDLLKTQVKQIAQDIGLSRIYSRRESMGMCFIGK 245

Query: 226 GKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD 284
            ++ + +          G    L   Q+L  H G+ ++T+GQR  +    G P +V  +D
Sbjct: 246 RRFSEFIDNYLE--PKPGVYKDLETDQVLEEHTGVHHFTLGQRIPIKRFNG-PYYVSKMD 302

Query: 285 KNSSRVIV 292
            ++  + V
Sbjct: 303 CHNQIIYV 310


>gi|149183669|ref|ZP_01862083.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus sp. SG-1]
 gi|148848617|gb|EDL62853.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus sp. SG-1]
          Length = 216

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 15/223 (6%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           +    Q QL  + FP+G + K+ VR++A+E GL  A K DS  ICF+ +  + D +    
Sbjct: 1   MNQLGQDQLEKVMFPIGSIDKKKVREIAKEAGLATATKKDSTGICFIGERNFKDFLSNYL 60

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV--- 292
              A  G++  L+G++ G H+G++ YTIGQR+GLG+   GEP FV+  D + + + V   
Sbjct: 61  P--AQPGNMETLSGEVKGNHDGLMYYTIGQRQGLGIGGAGEPWFVIGKDLDRNVLFVEQG 118

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVD 351
              E+L    I   +I+W  D          F+C  K R  Q+   V VQ  DD  V V 
Sbjct: 119 FDHEALYSDSILATDISWTSD----KEKTTEFECTAKFRYRQEDHEVKVQLLDDNTVKVI 174

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
           F++    V  GQA VFY  D      LGGG I    + +   E
Sbjct: 175 FKEPVRAVTPGQAVVFYNGD----ECLGGGTIDQIFKDEKKLE 213


>gi|167535113|ref|XP_001749231.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772384|gb|EDQ86037.1| predicted protein [Monosiga brevicollis MX1]
          Length = 495

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 122/305 (40%), Gaps = 20/305 (6%)

Query: 43  DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
            G++V GV ++ ++    +   G C A  D    + +   + +     D+ + + ++V  
Sbjct: 9   AGHEVTGVFMRTWDELDET---GVCTAEGDWRHVQDIAQRLGIPCKRVDFVQEYWHSVFQ 65

Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRR 161
                 AAG TP P + CNR +KF       R QLGAD +A GHY R    V +      
Sbjct: 66  VMLDELAAGATPNPDILCNRHIKFDAFYHFARDQLGADRVAMGHYAR----VDEREPDMP 121

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDI 220
            + R  D  +DQSYFL       L    FPLG + K+ V+ LA   G   +A + +S  +
Sbjct: 122 RLLRGCDDNKDQSYFLAGLPVHVLRHAAFPLGHLTKDRVKALAAAAGFSDVAGQRESMGL 181

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
           CFV + ++  +V++        G  VHL  G+ LG    +   T GQ   L        +
Sbjct: 182 CFVGKRRFGALVQQYLP--PRPGVFVHLESGRQLGPVTDLNVITFGQSARL-DGQPVRCY 238

Query: 280 VVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           V   D  +    V        L      L  ++W      +          V+IR     
Sbjct: 239 VAGKDMTAGAAYVVEGLHHPCLHARAFALSNVHWTHPPPQDVEA----NLHVRIRHRGQL 294

Query: 337 VPVFV 341
            P  V
Sbjct: 295 HPCAV 299


>gi|84995316|ref|XP_952380.1| trna methyl transferase [Theileria annulata strain Ankara]
 gi|65302541|emb|CAI74648.1| trna methyl transferase, putative [Theileria annulata]
          Length = 1070

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 158/374 (42%), Gaps = 44/374 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
                   RV V +SGGVDSS+   ++K  G+DV    L++      S   G C +  D+
Sbjct: 290 FQSPRSKKRVAVLVSGGVDSSLALWIMKSRGFDVQAFHLKV---NDLSNGPGLCSSN-DI 345

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  VC+ + V+ +V  + + +   ++      Y  GE P P + CN  +KF + L + 
Sbjct: 346 SYAMEVCNILRVTLHVLPFSQVYDKHILSDVLDDYRKGEVPNPDILCNSRIKFGEFLKMA 405

Query: 134 RQLGADVLATGHYI----------RSRLYVGDDG----KRRRIMCR---PMDLERDQSYF 176
              G D +ATGHY           + +     DG         + R     D  +DQ+YF
Sbjct: 406 TDWGFDYVATGHYATLCDDFFTKEQIKSPSYLDGCTSINGYYRIKRLCLSTDTVKDQTYF 465

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           L    Q Q+  L FP+G++ K  VRD A+ +GL   +K DS  +CF++     + + +  
Sbjct: 466 LSRLNQNQMSRLIFPIGNILKTQVRDFAKTVGLPTYNKKDSFGLCFLEDLDLSEYLTKTL 525

Query: 237 AGIALEGDIV-HLNGQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSR 289
                 G IV +   +++G HNG+ N+TIGQ++ +   +        P +VV  D   + 
Sbjct: 526 GES--RGPIVEYETNKVIGEHNGLYNFTIGQKKTINNYLNPKHVGNTPKYVVKKDIYKNT 583

Query: 290 VIVGP--RESLEVH------RIYLREINWLGDG------LFEDAVVDGFKCFVKIRSSQD 335
           + V     E    +         +R+  W            +  V D FK  VK+R + +
Sbjct: 584 LYVSASYNEDFFTNPRGIRSSFKVRDFFWNTPDYKDLINKVQSEVSDNFKFKVKLRHTPN 643

Query: 336 PVPVFVQRNDDGVY 349
                +    D   
Sbjct: 644 YNYCNINFKGDEAT 657


>gi|289670489|ref|ZP_06491564.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 238

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 22/240 (9%)

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           D  +DQSYFL    Q QL    FP+GD++K ++R  A++ GL    K DS  ICF+ +  
Sbjct: 2   DRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLRRTAQDAGLPTHAKKDSTGICFIGERD 61

Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVY 282
           + + + R     A  G+I    GQ +  H G+  +T+GQR GL +         P +VV 
Sbjct: 62  FREFLGRYLP--ARTGEIRDPRGQRIAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVVG 119

Query: 283 LDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
            D  S+ + V        L+   +   + +W+            F C  + R  Q   P 
Sbjct: 120 KDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTGA----PPARRFSCTAQTRYRQPDEPC 175

Query: 340 FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398
            V   DDG V V FE+ +  V  GQ+ V Y  +      LGG +I+ +   DA  E  L+
Sbjct: 176 TVDVQDDGSVKVHFERPQRAVTPGQSLVLYDGE----ECLGGAVIAAT---DAPLERQLA 228


>gi|210635362|ref|ZP_03298498.1| hypothetical protein COLSTE_02429 [Collinsella stercoris DSM 13279]
 gi|210158425|gb|EEA89396.1| hypothetical protein COLSTE_02429 [Collinsella stercoris DSM 13279]
          Length = 405

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 124/238 (52%), Gaps = 14/238 (5%)

Query: 161 RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQD 219
             +    D  +DQSY L++ TQ++L     PLG + KE  VR +ARE G + A K DSQ 
Sbjct: 172 YTLSCACDPSKDQSYVLYSLTQERLAHTLLPLGGLFKERDVRRIAREQGFENASKRDSQG 231

Query: 220 ICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279
           ICFV    +   ++R       EGDIV+  G++LGRH G I YT+GQR+GLGVA   P++
Sbjct: 232 ICFVPGNDFATYIERRRGAALPEGDIVNTRGEVLGRHQGAIRYTVGQRKGLGVACAHPVY 291

Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINW-----LGDGLFEDAVVDGFKCFVKIRSSQ 334
           V  +D  ++ V +G  E L    +   +  W     + + L ++A  +G     KIR   
Sbjct: 292 VTGIDAQANTVTLGEVEDLMASGLVANDWIWSAPAQIMEDLLDEAGAEGLPVSAKIRYRH 351

Query: 335 DPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
              P  ++R  DG    + + F+  E GVA GQA V Y  +     VLGGG +  + +
Sbjct: 352 PAQPARLRRAADGQDGYLEIAFDDPERGVAPGQAVVVYAGEV----VLGGGTVVRATK 405



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
             G+C +G D  DA  +   +  SH V D    F   V+  F  +Y  G TP PC+DCNR
Sbjct: 1   EPGACGSGSDADDAAAIARRLGFSHEVIDLRATFERRVVEKFVRTYEQGRTPNPCIDCNR 60

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR-----RRIMCRPMDLERDQ 173
            +KF  LL   R  G D +ATGHY R R      G          + RP    +D 
Sbjct: 61  HLKFDALLDYARDHGCDYIATGHYARIRTLGETLGPGATRALHFDVHRPG-AAKDN 115


>gi|255522399|ref|ZP_05389636.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J1-175]
          Length = 168

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 8/176 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N  D+RVVV MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RV + I + +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   L   
Sbjct: 58  DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             LGAD +ATGHY + +    +       + R +D  +DQ+YFL   +Q QL  + 
Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVM 168


>gi|207093038|ref|ZP_03240825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 260

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/277 (34%), Positives = 146/277 (52%), Gaps = 22/277 (7%)

Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           G+TP PC  CN  +KF   L    +LG + +ATGHY R +        +   +   +D  
Sbjct: 1   GQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYARVKEI-----DKVSYIQEALDKT 55

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM--GLDIAD-KSDSQDICFVQQGK 227
           +DQSYFL+A   + +  L FPLGD+ K+ ++ LA      L   +   +SQ+ICFV++  
Sbjct: 56  KDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKS- 114

Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286
           Y D +K+    +  EG + +L G+I+G H G + YTIG+R+G  +    EP FVV +D  
Sbjct: 115 YIDTLKKHVE-VEKEGVVKNLQGEIIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAK 173

Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD 346
            + ++VG +E L  H +  +  + + D           + F+K R    PV  FV   D+
Sbjct: 174 KNELVVGKKEDLATHSLKAQNKSLMKDF-------KSGEYFIKARYRSVPVKAFVSLKDE 226

Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
            + V+F++   GVA GQA V Y  D     +LGGG+I
Sbjct: 227 VIEVEFKEPFYGVAKGQALVVYQDDI----LLGGGVI 259


>gi|119593829|gb|EAW73423.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_b [Homo sapiens]
          Length = 307

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 43/296 (14%)

Query: 137 GADVLATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLF 178
           GAD +ATGHY R+ L   +  +++                    + +  D  +DQ++FL 
Sbjct: 5   GADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLS 64

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA 237
             +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + +   
Sbjct: 65  QVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ 124

Query: 238 GIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-- 294
                G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P  
Sbjct: 125 --PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 181

Query: 295 -RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVD 351
              +L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V 
Sbjct: 182 DHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVT 241

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSDAVEESL 396
             ++   +A+GQ  VFY  D      LG G I            G +R+    ES 
Sbjct: 242 AVQAVRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAGMATESP 293


>gi|88803301|ref|ZP_01118827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
 gi|88780867|gb|EAR12046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
          Length = 173

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V +SGGVDSSV A LLK+ GY+VIG+ ++ ++    +     C   +D  DA  V 
Sbjct: 2   KRVIVGLSGGVDSSVTAYLLKKQGYEVIGLFMKNWHDDSVT-ISNDCPWLEDSNDAMLVA 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +   V D  + ++  ++    S Y  G TP P V CNR +KF   + +  +LGAD 
Sbjct: 61  EKLGIPFQVVDLSKDYKERIVDYMFSEYRKGRTPNPDVLCNREIKFDVFMDIALKLGADY 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +ATGHY R    V + G     +    D+ +DQSYFL   +Q QL    F
Sbjct: 121 VATGHYCRKEEEVIE-GASVYKLLAGKDVNKDQSYFLCQLSQDQLAKRCF 169


>gi|255593058|ref|XP_002535783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
 gi|223521982|gb|EEF26602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
          Length = 156

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 7/161 (4%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +   +RVVV MSGGVDSSV A LLK  GYDVIGV ++ ++    +   G C A +D  D 
Sbjct: 3   DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             V D I + +Y  ++E+ + + V   F + Y AG TP P V CN+ +KF   L     L
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           GAD +ATGHY + +     D      M R  D  +DQ+YFL
Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFL 156


>gi|215412875|ref|ZP_03421581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 94_M4241A]
          Length = 286

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 136/290 (46%), Gaps = 19/290 (6%)

Query: 101 IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRR 160
           I  F SSYAAG    PCV CN+ +KF+ L   ++  G      GH   +       G R 
Sbjct: 1   INDFVSSYAAGGNSEPCVRCNQQIKFAAL---SQGCGVGFRYGGHRATT------PGCRV 51

Query: 161 RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDI 220
             + R +D ++DQSY L   T QQL    FP+GD  K  +R  A   GL +A+K DS DI
Sbjct: 52  GRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEAARRGLAVANKPDSHDI 111

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GE 276
           CF+  G     +          G +V  +G +L  H+G+  +TIGQRRGLG+A     G 
Sbjct: 112 CFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGR 169

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V  +D +++ V VG    L+V  +  R   +        A      C V++R+  + 
Sbjct: 170 PRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA----APSGPVDCVVQVRAHGET 225

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           V    +   D ++V       GVA GQ  V Y  D     VLG   I+G+
Sbjct: 226 VSAVAELIGDALFVQLHAPLCGVARGQTLVLYRPDPAGDEVLGSATIAGA 275


>gi|298526491|ref|ZP_07013900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298496285|gb|EFI31579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis 94_M4241A]
          Length = 286

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/290 (32%), Positives = 136/290 (46%), Gaps = 19/290 (6%)

Query: 101 IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRR 160
           +  F SSYAAG    PCV CN+ +KF+ L   ++  G      GH   +       G R 
Sbjct: 1   MNDFVSSYAAGGNSEPCVRCNQQIKFAAL---SQGCGVGFRYGGHRATT------PGCRV 51

Query: 161 RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDI 220
             + R +D ++DQSY L   T QQL    FP+GD  K  +R  A   GL +A+K DS DI
Sbjct: 52  GRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEAARRGLAVANKPDSHDI 111

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GE 276
           CF+  G     +          G +V  +G +L  H+G+  +TIGQRRGLG+A     G 
Sbjct: 112 CFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGR 169

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V  +D +++ V VG    L+V  +  R   +        A      C V++R+  + 
Sbjct: 170 PRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA----APSGPVDCVVQVRAHGET 225

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           V    +   D ++V       GVA GQ  V Y  D     VLG   I+G+
Sbjct: 226 VSAVAELIGDALFVQLHAPLCGVARGQTLVLYRPDPAGDEVLGSATIAGA 275


>gi|256370668|ref|YP_003108493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri SMDSEM]
 gi|256009460|gb|ACU52820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Sulcia muelleri SMDSEM]
          Length = 470

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LLK+ GY+VIG+ L+       S     C   +D  DA  V 
Sbjct: 2   KRVIVGMSGGVDSSVAALLLKKQGYEVIGIYLK------YSNIYNQCTWREDSIDAMLVS 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T+ +  Y+ D  + ++  +I      Y  G TP P + CN  +KF   L     L +D 
Sbjct: 56  QTLKIPFYIIDISKIYKKKIIKYIYKEYRKGFTPNPDILCNSKIKFKIFLEKLIDLKSDF 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY+  +  + ++GK    +   +D  +DQSYFL    Q Q+    FPLG++ K+ V
Sbjct: 116 IATGHYV-IKKEIFENGKIYYQIKSGIDQNKDQSYFLCKLNQNQIKKSLFPLGNLTKKEV 174

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           R +A +  L  A K DSQ ICF+  GK              EG I+ +N  
Sbjct: 175 RQIASKYHLINAKKKDSQGICFI--GKIKFFNFLKLKLKKKEGSIIEINQN 223



 Score =  132 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 14/142 (9%)

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRI 303
            +G+I+G+H G   +T GQR+GL +   + PLFV+  D  ++ + VG       L    +
Sbjct: 336 EDGKIIGKHIGAHFFTKGQRKGLKIGGYKFPLFVIEKDIKNNILYVGMGKNHPGLYTKVV 395

Query: 304 YLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361
            ++   I+W+             +   +IR  Q      + +  + +YV+FE  ++ V +
Sbjct: 396 LIKKKNIHWINPNHD----FFKKEVKCRIRYRQKLQKATLYKKKNKIYVEFEIPQLAVNA 451

Query: 362 GQACVFYTSDSNEARVLGGGII 383
           GQ  V+Y ++     V+G G I
Sbjct: 452 GQFIVWYINN----EVIGSGRI 469


>gi|149183668|ref|ZP_01862082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. SG-1]
 gi|148848616|gb|EDL62852.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. SG-1]
          Length = 155

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 89/158 (56%), Gaps = 8/158 (5%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K PKD RVVV MSGGVDSSV A LLK  GYDVIG+ ++ ++    +   G C A +D 
Sbjct: 1   MKKEPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D  RVC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L   
Sbjct: 58  EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
            +LGAD LATGHY +     G+       M R  D  +
Sbjct: 118 MKLGADYLATGHYAQVEYRDGE-----YKMLRVKDSNK 150


>gi|153855259|ref|ZP_01996425.1| hypothetical protein DORLON_02439 [Dorea longicatena DSM 13814]
 gi|149752258|gb|EDM62189.1| hypothetical protein DORLON_02439 [Dorea longicatena DSM 13814]
          Length = 191

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 9/195 (4%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            P+G+  K+ +R +A E+GL +A K DSQDICFV  G Y   ++  +      G+ V  +
Sbjct: 1   MPVGEYTKDQIRAMADEIGLLVAHKPDSQDICFVSDGDYASYIEENSDAKITPGNFVLSD 60

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           G ++G+H GII+YT+GQR+GLG+++G P+FV+ +   ++ V+VG  E      +   ++N
Sbjct: 61  GTVVGKHKGIIHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVVGSNEESMSRYVRADQVN 120

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368
           ++      + + +  + + KIR +       V++  +D +   FE+ +  +  GQA V Y
Sbjct: 121 FMTV----EDLTEPKRVWAKIRYNHRGAWCTVEKTGEDEILCTFEEPQRAITPGQAVVLY 176

Query: 369 TSDSNEARVLGGGII 383
             +     VLGGG I
Sbjct: 177 DGE----YVLGGGTI 187


>gi|237801139|ref|ZP_04589600.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023996|gb|EGI04053.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 155

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 8/161 (4%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+V MSGGVDSSV A LL   GY V G+ ++ +     ++    C A +D+ DA+ VC
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I +  +  ++   + + V   F   Y AG TP P + CNR +KF   L     LGAD+
Sbjct: 59  DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +ATGHY+R R     D   R  + + +D  +DQSYFL A  
Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVG 154


>gi|301167154|emb|CBW26733.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteriovorax marinus SJ]
          Length = 411

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 97/390 (24%), Positives = 178/390 (45%), Gaps = 31/390 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYD 75
           K   ++V M GGV+S+V A LLK+ G +V+G   V        + S +  S    + + +
Sbjct: 10  KQQTILVGMDGGVESTVAAYLLKKQGLNVVGLGVVF------HEYSYKSLSVWTPKSLEN 63

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +++C+ + +  Y  +    F + V+ P  S+  A E   P +  N+ +    L+   + 
Sbjct: 64  IKKICNQLEIPFYGTNINSLFYSRVLEPVVSTRLAAEQFEPVIAWNK-ILIETLIEKAKV 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA  +ATGH  +      +       +  P D+  D++Y L   +Q +L  L FPL ++
Sbjct: 123 VGATGIATGHKAK---VFKNQKSGVYSLLVPADVANDETYGLSRLSQDELSKLIFPLAEI 179

Query: 196 KKESVRDLAREMGL-----DIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIV-HL 248
           K+  +  +A  +G+     DI +K   +   F  +  + +VV+R +   +  EG I+ + 
Sbjct: 180 KQNEILKIANLLGITFAKDDIENKKRRKKSLF--RTDFIEVVERFSAPTLRKEGRILSYR 237

Query: 249 NGQILGRHNGIINYTI---GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           +G  +  H+G+  Y +   G     G A+ + L V+ ++     VIV   E        L
Sbjct: 238 DGTTICEHDGVHLYHLNQEGIVGKKGFAVDKTLSVIRINPRQQDVIVDNIERYHYTHCRL 297

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS-GQ 363
             + +  D   +  +    +CFV+ +SS   +P  +   ++  V V+FE  + GV   G 
Sbjct: 298 --MRFSHDPAMD--LSKPLQCFVQTKSSGAKLPCKLYFKNNRAVVVEFEDEQEGVCPRGG 353

Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
             VFY   +  A V+G G++  S   D  E
Sbjct: 354 YLVFYNRRAIGATVIGSGVVRSSGYFDDEE 383


>gi|238063188|ref|ZP_04607897.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
 gi|237884999|gb|EEP73827.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
          Length = 223

 Score =  228 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           ++ R +DL +DQSY L   T+ QL    FPLGD  K  VR+ A   GL +ADK DS DIC
Sbjct: 1   MLRRSVDLAKDQSYVLAVLTRAQLDRSVFPLGDSTKAQVREEAARRGLAVADKPDSHDIC 60

Query: 222 FVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLGV----AMGE 276
           F+  G     +          G++V  L G ++G H G   YT+GQRRGL +      G 
Sbjct: 61  FIADGDTRGFLAGRLGEA--PGEVVDALTGAVVGSHTGAYAYTVGQRRGLHLDRPAPDGR 118

Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P +V+ +   ++ V VGP E+LEV  +      W G     +      +C V++R+  D 
Sbjct: 119 PRYVLSITPKTNTVTVGPAEALEVRAVRAERPVWTGG----ERPAGPMECEVQLRAHGDV 174

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           VP  V+   D +  +  +   GVA+GQA V Y  D     VLG   ++ 
Sbjct: 175 VPATVELTGDTLRAELRRPVRGVAAGQAVVAYRPDPAGDVVLGSATVAT 223


>gi|332022487|gb|EGI62794.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Acromyrmex
           echinatior]
          Length = 239

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 15/237 (6%)

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D  DAR +CD + +S    ++ + + N V       Y  G TP P + CN+ +KF   
Sbjct: 3   EKDYDDARWICDKLEISLIQINFVKEYWNEVFSDLLEKYQNGYTPNPDILCNKNIKFDKF 62

Query: 130 LSVTR-QLGADVLATGHYIRSR----LYVGDDGKRRRI-----MCRPMDLERDQSYFLFA 179
             + R +  AD +ATGHY ++     L   +    +       + +  D  +DQ++FL  
Sbjct: 63  FHLARDKFQADAIATGHYAKTSFGPYLENYEANTSKYPILNVRLLQAQDSNKDQTFFLGQ 122

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAG 238
             QQ L    FPLG+  K  V+ +A + GL  IA K +S  ICFV + ++ D +    A 
Sbjct: 123 IPQQTLRRCMFPLGNYLKNHVKVMAMQAGLCQIARKKESTGICFVGKREFQDFISEYIAD 182

Query: 239 IALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
               G+ + L+ G  +G+HNGI   TIGQR  +   + +P +V   D+ S+ + V  
Sbjct: 183 --KPGNYIDLDSGLQIGKHNGIHKRTIGQRCKIAGCL-KPYYVFNKDQKSNTITVVH 236


>gi|221507042|gb|EEE32646.1| tRNA methyl transferase, putative [Toxoplasma gondii VEG]
          Length = 1596

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 124/324 (38%), Gaps = 78/324 (24%)

Query: 23   VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---------------NSRKASKRKGSC 67
            V V +SGGVDSSV   LL++ G+      ++++               +S  A    G C
Sbjct: 831  VAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGGC 890

Query: 68   CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               +D+  A +VC    V   V   +E +   V+         G TP P   CN+ VKF 
Sbjct: 891  GWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKFG 950

Query: 128  DLLSVTRQLGADV--------------------------------LATGHYIRSRL---- 151
              L +                                        +A+GHY R       
Sbjct: 951  AFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVPAAET 1010

Query: 152  ------------------------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                                      G + +RR  + R  D  +DQSYFL   +Q+QL  
Sbjct: 1011 SRRSEEGEDTEDRDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLRR 1070

Query: 188  LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            L  P+GDM+K  VR LA  + L  A + DSQ +CF+         +         G ++H
Sbjct: 1071 LVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLGSST--GPVLH 1128

Query: 248  LNGQI-LGRHNGIINYTIGQRRGL 270
                + LG H+G+ N+T+GQR+G+
Sbjct: 1129 FPSCLALGSHDGLWNFTVGQRKGV 1152



 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 332  SSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            S     P  V+ +         +++  + + G+A GQ    Y  +      LG G IS  
Sbjct: 1525 SRAPFGPSRVETSAGSSGAWTAWIELAEPDEGLAPGQIAAIYEGE----ECLGAGRISAR 1580

Query: 387  KRSDAVEESLLSV 399
            +   AVE +L S 
Sbjct: 1581 QGQMAVEAALRSA 1593


>gi|237829765|ref|XP_002364180.1| tRNA methyltransferase domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211961844|gb|EEA97039.1| tRNA methyltransferase domain-containing protein [Toxoplasma gondii
            ME49]
          Length = 1598

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 124/324 (38%), Gaps = 78/324 (24%)

Query: 23   VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---------------NSRKASKRKGSC 67
            V V +SGGVDSSV   LL++ G+      ++++               +S  A    G C
Sbjct: 833  VAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGGC 892

Query: 68   CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               +D+  A +VC    V   V   +E +   V+         G TP P   CN+ VKF 
Sbjct: 893  GWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKFG 952

Query: 128  DLLSVTRQLGADV--------------------------------LATGHYIRSRL---- 151
              L +                                        +A+GHY R       
Sbjct: 953  AFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVPAAET 1012

Query: 152  ------------------------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                                      G + +RR  + R  D  +DQSYFL   +Q+QL  
Sbjct: 1013 SRRSEEGEDTEDRDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLRR 1072

Query: 188  LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            L  P+GDM+K  VR LA  + L  A + DSQ +CF+         +         G ++H
Sbjct: 1073 LVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLGSST--GPVLH 1130

Query: 248  LNGQI-LGRHNGIINYTIGQRRGL 270
                + LG H+G+ N+T+GQR+G+
Sbjct: 1131 FPSCLALGSHDGLWNFTVGQRKGV 1154



 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 332  SSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
            S     P  V+ +         +++  + + G+A GQ    Y  +      LG G IS  
Sbjct: 1527 SRAPFGPSRVETSAGSSGAWTAWIELAEPDEGLAPGQIAAIYEGE----ECLGAGRISAR 1582

Query: 387  KRSDAVEESLLSV 399
            +   AVE +L S 
Sbjct: 1583 QGQMAVEAALRSA 1595


>gi|221481094|gb|EEE19502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
            putative [Toxoplasma gondii GT1]
          Length = 1579

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 124/324 (38%), Gaps = 78/324 (24%)

Query: 23   VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---------------NSRKASKRKGSC 67
            V V +SGGVDSSV   LL++ G+      ++++               +S  A    G C
Sbjct: 814  VAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGGC 873

Query: 68   CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               +D+  A +VC    V   V   +E +   V+         G TP P   CN+ VKF 
Sbjct: 874  GWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKFG 933

Query: 128  DLLSVTRQLGADV--------------------------------LATGHYIRSRL---- 151
              L +                                        +A+GHY R       
Sbjct: 934  AFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVRAAET 993

Query: 152  ------------------------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                                      G + +RR  + R  D  +DQSYFL   +Q+QL  
Sbjct: 994  SRRSEEGEDTEDTDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLRR 1053

Query: 188  LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            L  P+GDM+K  VR LA  + L  A + DSQ +CF+         +         G ++H
Sbjct: 1054 LVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLGSST--GPVLH 1111

Query: 248  LNGQI-LGRHNGIINYTIGQRRGL 270
                + LG H+G+ N+T+GQR+G+
Sbjct: 1112 FPSCLALGSHDGLWNFTVGQRKGV 1135



 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 347  GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
              +++  + + G+A GQ    Y  +      LG G IS  +   AVE +L S 
Sbjct: 1528 TAWIELAEPDEGLAPGQIAAIYEGE----ECLGAGRISARQGQMAVEAALRSA 1576


>gi|325119377|emb|CBZ54930.1| putative tRNA methyltransferase domain-containing protein [Neospora
           caninum Liverpool]
          Length = 1109

 Score =  223 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 126/315 (40%), Gaps = 63/315 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--------------NSRKASK 62
            P    + V +SGGVDSSV   LL++ G+      ++++              ++ +++ 
Sbjct: 345 PPLSEEIAVLLSGGVDSSVSLRLLQQRGFSPRAFFIKIWLPEYLLVSRHLPREDTGESAL 404

Query: 63  RKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +    C    D+  A +VC    V   V   +E +   V+         G TP P   C
Sbjct: 405 PEAGRACGWRADLTFAEQVCRQARVPLEVLPLQEAYWEGVVKQLLDEARQGLTPNPDWWC 464

Query: 121 NRTVKFSDLLSVTRQLGA------------------------------DVLATGHYIRSR 150
           N+ VKF   L +                                      +A+GHY R  
Sbjct: 465 NQRVKFGAFLDLLDGRENRRNLSRHNGDKASEAKNAERPSSAWSSCWTGAVASGHYARVV 524

Query: 151 L--------------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                             + G RR  + R  D  +DQSYFL   +Q+QL  L  P+GDM+
Sbjct: 525 HDAEAARSGQREGHEREDERGDRRTRLLRGKDRRKDQSYFLSGLSQRQLRRLLTPVGDME 584

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGR 255
           K  VR LA  + L  A + DSQ +CF+ +       +      +  G ++H    + LG 
Sbjct: 585 KVEVRRLAAGLALPTASRRDSQGLCFLGKLPLSLFFQHFLG--SSPGPVLHFPSCLALGT 642

Query: 256 HNGIINYTIGQRRGL 270
           H G+ N+T+GQR+G+
Sbjct: 643 HGGLWNFTVGQRKGV 657



 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 347  GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399
              +++  + + G+A GQ    Y  +      LG G IS  +   AVE +L + 
Sbjct: 1058 TAWIELHEPDEGLAPGQIAALYEGE----ECLGAGRISPRQGHLAVEAALRAA 1106


>gi|126653986|ref|ZP_01725821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
 gi|126589503|gb|EAZ83646.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
          Length = 137

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 3/135 (2%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            ++P  +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++    +   G C A +D  
Sbjct: 4   TRDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYD 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D  +VC+ I + +Y  ++E+++ + V   F   Y AG TP P V CN+ +KF   L    
Sbjct: 61  DVIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAM 120

Query: 135 QLGADVLATGHYIRS 149
            LGAD LATGHY R 
Sbjct: 121 SLGADYLATGHYARI 135


>gi|294463455|gb|ADE77257.1| unknown [Picea sitchensis]
          Length = 323

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 32/273 (11%)

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +  D +A+GHY   +    +   +  ++    D  +DQ+YFL   +Q+QL  L FPLG M
Sbjct: 1   MDFDYVASGHYAHVKHLSVECETKCSVLHLSADEVKDQTYFLSHLSQEQLRKLLFPLGCM 60

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254
            KE VR+LA EMGL   D+ DSQ +CF+ + K+ + V R      +EG ++    G  LG
Sbjct: 61  SKEEVRNLAAEMGLLNKDRKDSQGLCFLGKVKFSEFVARHIGE--MEGILLEAETGDFLG 118

Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLREINWL 311
           +H G   YTIGQR+GL ++ G P +VV  D  ++ V V     SL+  R   ++  + W+
Sbjct: 119 KHRGFWFYTIGQRQGLRLSGG-PWYVVAKDVENNVVFVSRNYFSLDKKRCLFHVSSLKWI 177

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-----------------VDFEK 354
                +D  +D  +C  K+R         ++     +Y                 V   +
Sbjct: 178 LGSPPKD--LDKLQC--KVRHGPKFYNCHMELVKGNLYKENEHQSLGETAQEIAIVRLSE 233

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
            + G+A+GQ   FY  ++     LG GII  S 
Sbjct: 234 DDQGLAAGQYVAFYKGNT----CLGSGIIIDSW 262


>gi|224419182|ref|ZP_03657188.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT
           98-5491]
          Length = 190

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 22/207 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ MSGGVDSS  A LL++ GY V G+ L+L++  +               + ++  
Sbjct: 2   KKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEKHDYYT--------RNIQKCA 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++N+ + + D  E F+ +V   F  SY  G TP PC  CN  VKF+    + + LG + 
Sbjct: 54  ESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCEF 113

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGHY + +         R  + + +D  +DQSYFLF    + +  + FPLGD KKE +
Sbjct: 114 VATGHYAQIK-------NGR--IAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEEI 164

Query: 201 RDLARE----MGLDIADKSDSQDICFV 223
           + +A +    +G  +    DSQ+ICFV
Sbjct: 165 KPIALKELPWLG-TLETYKDSQEICFV 190


>gi|126920887|gb|AAI33484.1| TRMU protein [Bos taurus]
          Length = 858

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 14/212 (6%)

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA 237
              Q+ L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +  + + +     
Sbjct: 620 QVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQ 679

Query: 238 GIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-- 294
                G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V+V P  
Sbjct: 680 --PRPGRFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPRT 736

Query: 295 -RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVD 351
              +L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+V 
Sbjct: 737 DHPALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVT 796

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             K+   +A GQ  VFY  D      LG G I
Sbjct: 797 AVKAVRALAPGQFAVFYKGD----ECLGSGKI 824


>gi|237800552|ref|ZP_04589013.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023412|gb|EGI03469.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 184

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 18/193 (9%)

Query: 210 DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRG 269
             A K DS  ICF+ + ++ D +++     A  G+I    G+++GRHNG++ +TIGQR+G
Sbjct: 1   ATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTTGEVIGRHNGLMYHTIGQRQG 58

Query: 270 LGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321
           LG+        +P +V+  D  ++ +IVG       L    +   EI W+          
Sbjct: 59  LGIGGLKDASDDPWYVLVKDLGANELIVGQGNDHPWLFSSALVSSEIYWVNPVDLSTP-- 116

Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381
              +   K+R  Q   P  +++  DG    F+  +  V  GQ+ VFY  D      LGGG
Sbjct: 117 --RRLTAKVRYRQGDQPCTLEKTADGYRAIFDDPQRAVTPGQSVVFYDGDI----CLGGG 170

Query: 382 IISGSKRSDAVEE 394
           +I  ++   + ++
Sbjct: 171 VIEIAEPWTSKDK 183


>gi|313224567|emb|CBY20357.1| unnamed protein product [Oikopleura dioica]
 gi|313247180|emb|CBY35998.1| unnamed protein product [Oikopleura dioica]
          Length = 385

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 120/268 (44%), Gaps = 23/268 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +++RV VA+SGGVDS+V A LLK + G++VIGV  + ++S+  +   G C A  D   AR
Sbjct: 8   RNLRVAVALSGGVDSAVAAVLLKLQQGHEVIGVHSRNWDSKDEN---GVCQADADYDSAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136
           RV + + +     +  + +   V  PF  S     +      CN  +KF  +L   + Q+
Sbjct: 65  RVAEHLKIELVGINCVKEYWTEVFEPFLESTQNANSFNIDQLCNERIKFDAMLKKAKDQI 124

Query: 137 GADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQ---------- 182
             D  ATGHY   R       K     RR +             L  T +          
Sbjct: 125 HFDKFATGHYASIRKVEPVGQKLIATSRRCLSESTCFRTQNESTLSKTKRSISHGSARHK 184

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
            ++  + FPLG + K  V+ +A E GL+ +A   +S  +CF+ + +  D +         
Sbjct: 185 SRMIRVIFPLGSLNKNVVKAIATENGLEALAMARESMGVCFIGKRRMSDFLSDYLFDPFS 244

Query: 242 EGDIVHLN-GQILGRHN-GIINYTIGQR 267
           +  I  ++ G+ LG+    I    +GQR
Sbjct: 245 K-KIFDIDSGKFLGKREFPIYGVAVGQR 271


>gi|81673663|gb|AAI09775.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
          Length = 263

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRI 235
           L    Q+ L    FPLG++ K+ V+ +A E  L  +  K +S  ICF+ +  + + +   
Sbjct: 23  LGTVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEY 82

Query: 236 NAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                  G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V+V P
Sbjct: 83  LQ--PRPGRFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAP 139

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VY 349
                +L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+
Sbjct: 140 RTDHPALYRDLLRTGRVHWIAEEPTAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVW 199

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           V   K+   +A GQ  VFY  D      LG G I
Sbjct: 200 VTAVKAVRALAPGQFAVFYKGD----ECLGSGKI 229


>gi|119593830|gb|EAW73424.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_c [Homo sapiens]
          Length = 281

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 25/238 (10%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRI 235
           L   +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + + 
Sbjct: 37  LEMVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQY 96

Query: 236 NAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                  G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P
Sbjct: 97  LQ--PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAP 153

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VY 349
                +L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+
Sbjct: 154 RTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVW 213

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSDAVEESL 396
           V   ++   +A+GQ  VFY  D      LG G I            G +R+    ES 
Sbjct: 214 VTAVQAVRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAGMATESP 267


>gi|116283770|gb|AAH27991.1| TRMU protein [Homo sapiens]
          Length = 267

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 25/238 (10%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRI 235
           L   +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + + 
Sbjct: 23  LEMVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQY 82

Query: 236 NAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                  G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P
Sbjct: 83  LQ--PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAP 139

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VY 349
                +L    +    ++W+ +      V D   +C  + R     VP  +  N DG V+
Sbjct: 140 RTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVW 199

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSDAVEESL 396
           V   ++   +A+GQ  VFY  D      LG G I            G +R+    ES 
Sbjct: 200 VTAVQAVRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAGMATESP 253


>gi|294645486|ref|ZP_06723187.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
 gi|292639187|gb|EFF57504.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
          Length = 216

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 14/213 (6%)

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAG 238
             Q  L    FPLGD  K  VR+   E G +    + +S ++CF+ +G Y D ++     
Sbjct: 1   MGQDVLKRCIFPLGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPE 59

Query: 239 IALE---GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295
           +  E   G  V+  G  LG+H G   YTIGQR+GL +A+G+P +V+ ++   + V++G  
Sbjct: 60  LDSEIGSGWFVNSEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDA 119

Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354
           + LE   +   +       + E  +       V+IR    P+P  V+R +DG + V F +
Sbjct: 120 DQLETEYMLAEQ----DKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLE 175

Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           +   +A GQ+ VFY       RVLGG  I+  +
Sbjct: 176 TASAIAPGQSAVFYDG----RRVLGGAFIASQR 204


>gi|260206355|ref|ZP_05773846.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis K85]
          Length = 268

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY R              + R +D ++DQSY L   T QQL    FP+GD  K  +R
Sbjct: 24  PTGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIR 74

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A   GL +A+K DS DICF+  G     +          G +V  +G +L  H+G+  
Sbjct: 75  AEAARRGLAVANKPDSHDICFIPSGNTRAFLGERIG--VRRGVVVDADGVVLASHDGVHG 132

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +       
Sbjct: 133 FTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA--- 189

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            A      C V++R+  + V    +   D ++V       GVA GQ  V Y  D     V
Sbjct: 190 -APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEV 248

Query: 378 LGGGIISGS 386
           LG   I+G+
Sbjct: 249 LGSATIAGA 257


>gi|256752921|ref|ZP_05493754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748201|gb|EEU61272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 172

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 5/148 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77
           + RV + MSGGVDSSV A LLK+ G+DVIG+T++++   +A       SCC+ +   DA+
Sbjct: 27  NNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAK 86

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +V + + + HY  D  + F + ++  F + Y  G TP PCV CNR +KF +LL    +LG
Sbjct: 87  KVAEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 146

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCR 165
           A  +ATGHY+R      D+  +R ++ +
Sbjct: 147 AYYIATGHYVRKEY---DEKTKRYLLKK 171


>gi|289575733|ref|ZP_06455960.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis K85]
 gi|289540164|gb|EFD44742.1| LOW QUALITY PROTEIN: tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           trmU [Mycobacterium tuberculosis K85]
          Length = 367

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TGHY R              + R +D ++DQSY L   T QQL    FP+GD  K  +R
Sbjct: 123 PTGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIR 173

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
             A   GL +A+K DS DICF+  G     +          G +V  +G +L  H+G+  
Sbjct: 174 AEAARRGLAVANKPDSHDICFIPSGNTRAFLGERIG--VRRGVVVDADGVVLASHDGVHG 231

Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317
           +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  R   +       
Sbjct: 232 FTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA--- 288

Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377
            A      C V++R+  + V    +   D ++V       GVA GQ  V Y  D     V
Sbjct: 289 -APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEV 347

Query: 378 LGGGIISGS 386
           LG   I+G+
Sbjct: 348 LGSATIAGA 356


>gi|167945139|ref|ZP_02532213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 145

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V MSGGVDSSV A LL   GY V G+ ++ +        K  C A  D+ DA  V D
Sbjct: 7   KIIVGMSGGVDSSVAALLLLEQGYQVEGLFMKNWEEDD---TKEYCSAATDLADASSVAD 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
            + +  +  ++   +   V   F   Y AG TP P V CNR +KF   L      LGA  
Sbjct: 64  QLGIPLHSVNFSADYWERVFAYFLDEYRAGRTPNPDVLCNREIKFKAFLDYALSTLGASR 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRP 166
           +ATGHY R     G+       + R 
Sbjct: 124 IATGHYARLIESNGE-----YQLQRA 144


>gi|153842966|ref|ZP_01993539.1| 3-oxoacyl-[acyl-carrier-protein] synthase 1 [Vibrio
           parahaemolyticus AQ3810]
 gi|149745344|gb|EDM56595.1| 3-oxoacyl-[acyl-carrier-protein] synthase 1 [Vibrio
           parahaemolyticus AQ3810]
          Length = 331

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 6/159 (3%)

Query: 115 LPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
            P + CN+ +KF   L    + L AD +A GHY+R       +   +  M R +D  +DQ
Sbjct: 1   NPDILCNKEIKFKAFLEFADEVLEADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQ 57

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           SYFL+  + +Q+    FP+GD++K  VR +A E GL  A K DS  ICF+ + K+ + + 
Sbjct: 58  SYFLYTLSHEQVARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLG 117

Query: 234 RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV 272
           R     A  G+I    G+++G+H G++ +T+GQR+GL +
Sbjct: 118 RYLP--AQPGNIETPEGEVIGQHQGLMYHTLGQRKGLHI 154


>gi|238590061|ref|XP_002392203.1| hypothetical protein MPER_08255 [Moniliophthora perniciosa FA553]
 gi|215457930|gb|EEB93133.1| hypothetical protein MPER_08255 [Moniliophthora perniciosa FA553]
          Length = 173

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 2/172 (1%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+AMSGGVDSSVVA LL    +D+  V ++ ++ R  S     C   +D  D RR+C  +
Sbjct: 1   VIAMSGGVDSSVVAKLLSERDHDLSAVFMRNWDLRDESGTDEGCQWERDWNDVRRLCKAL 60

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   + D  + +   +  P    + +G+TP P V CNR +KF  LL          LAT
Sbjct: 61  DIPCKMVDLSKEYWTRIFEPSLEIWQSGQTPNPDVWCNREIKFGALLDRLSLDEGTWLAT 120

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GHY R     G +   R  +    D  +DQ+++L +  +  L    FPLG +
Sbjct: 121 GHYARKAWQEGSNP--RPKLLSAKDRIKDQAFYLASINETGLSRALFPLGHL 170


>gi|76664739|emb|CAJ17809.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Candidatus Phytoplasma solani]
          Length = 185

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 33  SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVYDARRVCDTINV 85
           S+V A LLK+ GY+V  V ++ ++S      KG+       C    D  DA +V   + +
Sbjct: 4   SAVAALLLKQQGYEVEAVFMRNWDSNLNFDIKGNPTLNNDICSQELDYNDALKVSLQLGI 63

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADVLATG 144
             +  D+ E +   V + F  +++   TP P + CN  +KF   +   T +L  D +A G
Sbjct: 64  KLHRIDFIEEYWKKVFLSFIDAFSNNLTPNPDILCNNEIKFKAFIDYVTDKLKPDYVAMG 123

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           HY         +    + +   +D ++DQ+YFL   T  QL ++ FPL  + K  VR +A
Sbjct: 124 HYADIVT----NQDLTKALACALDQKKDQTYFLSQLTTSQLQNIIFPLAKLTKPEVRQIA 179

Query: 205 REMGL 209
            + GL
Sbjct: 180 LDNGL 184


>gi|229025856|ref|ZP_04182254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1272]
 gi|228735467|gb|EEL86064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1272]
          Length = 190

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 214 KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA 273
           K DS  ICF+ +  + D +       A  G +  L+G++ G+H+G++ YTIGQR GLG+ 
Sbjct: 12  KKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIG 69

Query: 274 M-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVK 329
             G+P F V  +   + + V      E L    +    + W+ +   E      FKC  K
Sbjct: 70  GNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKET----EFKCTAK 125

Query: 330 IRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388
            R  Q    V VQ  +++ V +  ++    +  GQA VFY  D      LGG  I     
Sbjct: 126 FRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGD----ECLGGATIDEVYH 181

Query: 389 SDAVEESL 396
           S    + L
Sbjct: 182 SGKKLDYL 189


>gi|31747827|gb|AAO38412.1| Lfe204p1 [Leptospirillum ferrooxidans]
          Length = 238

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 22/241 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-----------CC 68
           + RV+V MSGGVDS+V A ++K+ GYDV G  +++++S  +S+   S           CC
Sbjct: 2   NKRVLVGMSGGVDSAVSALIMKQSGYDVTGAIIEIWDSEDSSECHPSSENARPWSERGCC 61

Query: 69  AGQDVYDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               V   R +C+  + +   + D  + FR  V+ PF   Y    TP PCV CN  VK  
Sbjct: 62  H---VPMVRYLCEEVLEIPFVMVDRRDDFRKKVMDPFRDEYLKALTPNPCVTCNARVKIH 118

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +L+++   LG +++ATGHY R           +  + +  D       F  +   +++  
Sbjct: 119 ELIALADSLGIEMVATGHYARKVYSPV---TGQYHVAKGRDPGEGPVLFFGSLKSEEIAR 175

Query: 188 LRFPLGDMKKESVRDLARE-MGLDIADKSDSQ-DICFVQQGKYFD--VVKRINAGIALEG 243
           L +PL D+ KE VR LAR+       +      +  F  + K  +   ++++++ + ++G
Sbjct: 176 LVWPLSDLTKEEVRKLARDCRFFPSCENGPKTWEALFCLRDKNLEVLFLEKMDSFLEMKG 235

Query: 244 D 244
           +
Sbjct: 236 E 236


>gi|320534232|ref|ZP_08034748.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133564|gb|EFW25996.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 245

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDIC 221
           + R  D  +DQSY L  + +  L    FPLGD   K  VR  A   GL +A K DS DIC
Sbjct: 19  LRRAADAAKDQSYVLAVSGRDGLSRALFPLGDAPSKADVRAEAERRGLPVASKPDSYDIC 78

Query: 222 FVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV----AMGEP 277
           FV  G     + R       EG +V  +G +LG H+G   +T+GQR+GLG+      G P
Sbjct: 79  FVADGDTRGFLTRSLG--VHEGTLVSPDGDVLGTHDGYFGFTVGQRKGLGLTRPAPDGRP 136

Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF-EDAVVDGFKCFVKIRSSQDP 336
            +V+    +++ V+VGP E L    +    +  L D L   D  +      +++R+   P
Sbjct: 137 RYVIETRPSTNEVVVGPEELLSRKSVDGNNLILLADPLPLNDGDLGWQDVTIQVRAHGRP 196

Query: 337 VPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +P    V      +         G+A+GQ+ V Y  DS   +VL    ++
Sbjct: 197 LPADVAVDVETGTLRAKLHHPLRGLAAGQSVVVYGGDS-GDQVLAQATVA 245


>gi|285921099|gb|ADC39865.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921113|gb|ADC39872.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921115|gb|ADC39873.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921119|gb|ADC39875.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921121|gb|ADC39876.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921123|gb|ADC39877.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921127|gb|ADC39879.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921129|gb|ADC39880.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921131|gb|ADC39881.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921133|gb|ADC39882.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921161|gb|ADC39896.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + + ++V D +E F+
Sbjct: 1   YKLKNAGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHVLDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|285921169|gb|ADC39900.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921181|gb|ADC39906.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921193|gb|ADC39912.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + + +++ D +E F+
Sbjct: 1   YKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHILDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +C  +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----ICTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|88803300|ref|ZP_01118826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
 gi|88780866|gb|EAR12045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
          Length = 239

 Score =  189 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 46/239 (19%)

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +    FP+G++ K  VR +A++  L  A+K DSQ +CF+ + +  + +++       EG+
Sbjct: 8   ISKALFPIGELTKPEVRAIAKQADLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGE 65

Query: 245 IVHL---------------------------------NGQILGRHNGIINYTIGQRRGL- 270
           I+ +                                 +G+++G+H G   +T GQR+GL 
Sbjct: 66  IIKIPSDFSQYKRHVPEFENKECELEYFATKFAYAAEDGKVVGKHQGAHYFTKGQRKGLD 125

Query: 271 GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFK 325
                E L+V+  D N++ +  G     + L  + +++   EI+W+   L   A+ +  +
Sbjct: 126 VGGTKEALYVIETDVNTNIIYTGEGKNHQGLYRNVLFVSNKEIHWIRKDLIL-AIGENLR 184

Query: 326 CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
              +IR  Q      + + + G+YV+FE  +  +  GQ   +Y ++     +LG G+IS
Sbjct: 185 VEARIRYRQTLEKAVLYKVEKGMYVEFENKQSAIQEGQFVAWYQNE----ELLGSGVIS 239


>gi|7022010|dbj|BAA91462.1| unnamed protein product [Homo sapiens]
          Length = 166

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 4/135 (2%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGD 155
           +ATGHY R+ L   +
Sbjct: 123 IATGHYARTSLEDEE 137


>gi|285921077|gb|ADC39854.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921111|gb|ADC39871.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921125|gb|ADC39878.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921135|gb|ADC39883.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921141|gb|ADC39886.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921209|gb|ADC39920.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921211|gb|ADC39921.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + + ++V D +E F+
Sbjct: 1   YKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHVLDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|285921101|gb|ADC39866.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921107|gb|ADC39869.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921117|gb|ADC39874.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921165|gb|ADC39898.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921187|gb|ADC39909.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921191|gb|ADC39911.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921197|gb|ADC39914.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921235|gb|ADC39933.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + + +++ D +E F+
Sbjct: 1   YKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHILDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|291534007|emb|CBL07120.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Megamonas hypermegale ART12/1]
          Length = 135

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/131 (49%), Positives = 82/131 (62%), Gaps = 6/131 (4%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V VAMSGGVDSS+ AALL   GYDVIGVT+ L +  + +           V DA++V
Sbjct: 2   KKKVAVAMSGGVDSSLTAALLIEQGYDVIGVTMTLSDESREA------GGSTAVSDAKKV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D +N+ HYV +Y ++F++ VI  F S YA G TP PCV CN TVKF  LL    +LGAD
Sbjct: 56  ADALNIPHYVVNYHKKFKDDVIKYFISEYAKGRTPNPCVRCNNTVKFGSLLKDCLELGAD 115

Query: 140 VLATGHYIRSR 150
            +ATGHY R  
Sbjct: 116 CVATGHYARIE 126


>gi|285921079|gb|ADC39855.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921081|gb|ADC39856.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921083|gb|ADC39857.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921085|gb|ADC39858.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921087|gb|ADC39859.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921089|gb|ADC39860.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921091|gb|ADC39861.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921093|gb|ADC39862.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921095|gb|ADC39863.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921097|gb|ADC39864.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921103|gb|ADC39867.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921105|gb|ADC39868.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921109|gb|ADC39870.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921137|gb|ADC39884.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921139|gb|ADC39885.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921143|gb|ADC39887.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921145|gb|ADC39888.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921147|gb|ADC39889.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921149|gb|ADC39890.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921151|gb|ADC39891.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921153|gb|ADC39892.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921155|gb|ADC39893.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921157|gb|ADC39894.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921159|gb|ADC39895.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921163|gb|ADC39897.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921167|gb|ADC39899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921171|gb|ADC39901.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921175|gb|ADC39903.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921177|gb|ADC39904.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921179|gb|ADC39905.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921185|gb|ADC39908.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921189|gb|ADC39910.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921195|gb|ADC39913.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921199|gb|ADC39915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921201|gb|ADC39916.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921203|gb|ADC39917.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921205|gb|ADC39918.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921207|gb|ADC39919.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921213|gb|ADC39922.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921215|gb|ADC39923.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921217|gb|ADC39924.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921221|gb|ADC39926.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921223|gb|ADC39927.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921225|gb|ADC39928.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921227|gb|ADC39929.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921229|gb|ADC39930.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921231|gb|ADC39931.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921233|gb|ADC39932.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921237|gb|ADC39934.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921239|gb|ADC39935.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
 gi|285921241|gb|ADC39936.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + + +++ D +E F+
Sbjct: 1   YKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHILDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|149065692|gb|EDM15565.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 166

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S      +G C A +D  DA +VC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140
            +++  +   Y + + N V   F + Y  G TP P + CN+ +KFS         LGAD 
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122

Query: 141 LATGHYIRSRLYVGDDGKRRR 161
           +ATGHY R+ L   +  +++ 
Sbjct: 123 VATGHYARTSLEDEEVFEQKH 143


>gi|285921173|gb|ADC39902.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + + +++ D +E F+
Sbjct: 1   YKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHILDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF ++Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVNTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|196019212|ref|XP_002118942.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens]
 gi|190577616|gb|EDV18572.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens]
          Length = 136

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (68%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVAMSGGVDSS VAA+L    Y+VIG+TLQLY++ + + +KG+CCAGQD+YDA+   D 
Sbjct: 1   VVVAMSGGVDSSTVAAMLHEQNYEVIGITLQLYDAGEMAAKKGACCAGQDIYDAKVAADK 60

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + HYV +YE  F   VI  FA SY  GETP+PCV CN+ VKF DL    + LGA  LA
Sbjct: 61  IGIPHYVLNYESLFSKKVIEDFAESYIKGETPIPCVKCNQKVKFEDLYKTAKNLGAKALA 120

Query: 143 TGHYIRSRLYVGDD 156
           TGHY+R      + 
Sbjct: 121 TGHYVRKAKVNNEH 134


>gi|285921183|gb|ADC39907.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  186 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G+ VIG  ++L+               +++    +V + + + +++ D +E F+
Sbjct: 1   YKLKNLGHKVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQIPYHILDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|285921219|gb|ADC39925.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter coli]
          Length = 188

 Score =  186 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 19/191 (9%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             LK  G++VIG  ++L+               +++    +V + + V +++ D +E F+
Sbjct: 1   YKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVANFLQVPYHILDLQEDFK 52

Query: 98  NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDG 157
           N V +PF  +Y  G+TP PC  CNR +K   LL   + LG + LATGHY R    +    
Sbjct: 53  NKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARLENNL---- 108

Query: 158 KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKS 215
                +   +D  +DQSYFL +  ++ L  L FPLG+MKKE V+  A   E+    A + 
Sbjct: 109 -----IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQK 163

Query: 216 DSQDICFVQQG 226
           +S +ICFV+  
Sbjct: 164 ESSEICFVEDT 174


>gi|315123662|ref|YP_004065666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315017384|gb|ADT65477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 199

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 17/212 (8%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           + +  ++ L  L FPLG+MKKE V+  A   E+    A + +S +ICFV+   Y  V+ +
Sbjct: 1   MASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQ 59

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG 293
                 + G+++  +G+++G+H G ++YTIG+RRG  V    EP FV+ ++   +++IVG
Sbjct: 60  FM-DTKIPGEVLDSSGKVVGKHEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVG 118

Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF 352
            +E L++    L+ IN   D            C VKIR      P  V+  +D    +  
Sbjct: 119 TKEELKISEFNLKNINLFIDA-------KELDCEVKIRYRSKSTPCKVEIYEDKSAKIIL 171

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           +    G+ASGQ  VFY  D    +V+  G I 
Sbjct: 172 KDPVYGLASGQMAVFYDHD----KVIASGFIE 199


>gi|322496678|emb|CBZ31747.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 613

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 161/560 (28%), Gaps = 205/560 (36%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA--------------AL------------------ 39
           + +      +R+ + +SGGVDS+V A              AL                  
Sbjct: 1   MSVATTRSQLRIAIGLSGGVDSAVTALVLQRCVHTTLDVAALRCFGGPRAPPPPLRALRA 60

Query: 40  -------LKR---------------DGYDV-----IGVTLQLYNSRKASKRKGSCCAGQ- 71
                  L                  GYD          ++ ++   A    G C   Q 
Sbjct: 61  AVDAHVPLHELLGKLVTAGEPGIAAAGYDAAPVQYTPFFMRNWHDDNA--ASGWCERAQV 118

Query: 72  DVYDARRVCDTI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           D  DA++V   +           ++D    +         ++YAAG T    V CN  +K
Sbjct: 119 DYDDAQQVARALDLLPRDGTPLPMYDLSSEYVGQCFERMLAAYAAGHTLNVDVLCNSKIK 178

Query: 126 FSDLLSVTRQLGADV----LATGHYIRSR-----LYVGDDGKRRRIMC-RPMDLER---D 172
           F  L    R+ G+      LATGHY R+      ++ GD+ KRR ++  RP    R   D
Sbjct: 179 FGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDNAKRRLVLLVRPCSAGRDLND 238

Query: 173 QSYFLFATTQQQLCDLRFPLGDMK--KESVRDLAR-EMGL-------------------D 210
           Q+ FL       L    FPLG +   K  VR LAR   G                     
Sbjct: 239 QTVFLSRVPPSALATAIFPLGHLFTCKADVRALARHSFGHSGGTAAVASSDGEPQRTVAH 298

Query: 211 IADKSDSQDICFVQ-------------QGKYFDVVKRI---------------------N 236
           I+ K  S  ICFV                ++   +                         
Sbjct: 299 ISRKKTSTGICFVGPPSAATCAGDTSCSSRFPPFLNEYLPPPPPPPLPSTRTVFCDAVTG 358

Query: 237 AGIALEGDI-VHLNGQILGR-----HNGIIN---------------YTIGQRRGL----- 270
             + + GD   H  G  L       H G +                +T+GQR  L     
Sbjct: 359 EELLVPGDTAEHFAGAPLQPFACRLHRGPMFGALRADYPGLLPAYAFTLGQRVRLCRRTV 418

Query: 271 -GVAMGEPLFVVYL------------DK--------NSSRVIVGPRESLEVHRIYLREIN 309
            G       +V               DK            V       L   +  +  ++
Sbjct: 419 DGRVREAAYYVADKVLAPLPSSDMSDDKAVPVRLLAEVRVVAQWNHALLYASQATVASLH 478

Query: 310 WLGDGL--------FEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDD----------GV 348
           W             + +  V G +C    R  +   P  V+    +++            
Sbjct: 479 WWLPPPVLHQRAVAYHERGVYGLRCHCCTRHQEALQPATVEWEAADEELSADAEVRVRRA 538

Query: 349 YVDFEKSEVGVASGQACVFY 368
            V F+     V  GQA V Y
Sbjct: 539 RVHFDAPLRAVTPGQALVAY 558


>gi|225022757|ref|ZP_03711949.1| hypothetical protein CORMATOL_02802 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944478|gb|EEG25687.1| hypothetical protein CORMATOL_02802 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 200

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            FP+GD  K  +R+ A  MG  +A K DS DICF+  G     +          G IV  
Sbjct: 1   MFPVGDTIKPKIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGARIGL--RPGMIVDT 58

Query: 249 NGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
            G  L  H+G  NYTIGQR+GL +    A G+P +V  ++  +  V VG R  L V  I 
Sbjct: 59  EGNKLREHDGAWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIE 118

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASG 362
              + +L        +   F   V++R+    VP    V R  D + ++ +K+  GVA G
Sbjct: 119 ADRLKYLH-----PMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVARG 173

Query: 363 QACVFYTSDSNEARVLGGGIISGS 386
           QA V Y  D     VLG G I G+
Sbjct: 174 QAAVLYLPDPGGDIVLGSGTICGT 197


>gi|321398957|emb|CAM65601.2| putative tRNA-methyl transferase [Leishmania infantum JPCM5]
          Length = 613

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/560 (18%), Positives = 159/560 (28%), Gaps = 205/560 (36%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAA--------------------------------- 38
           + +      +R+ + +SGGVDS+V A                                  
Sbjct: 1   MSVATTRSQLRIAIGLSGGVDSAVTALVLQRCVHTTLDVAALRCFGGPRAPPPPLRALRA 60

Query: 39  ----------LL-----------KRDGYDV-----IGVTLQLYNSRKASKRKGSCCAGQ- 71
                     LL              GYD          ++ ++   A    G C   Q 
Sbjct: 61  AVDAHVPLHELLGKLVTAGEPGIAAAGYDAAPVQYTPFFMRNWHDDNA--ASGWCERAQV 118

Query: 72  DVYDARRVCDTI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           D  DA++V   +           ++D    +         ++YAAG T    V CN  +K
Sbjct: 119 DYDDAQQVARALDLLPRDGTPLPMYDLSSEYVGQCFERMLAAYAAGHTLNVDVLCNSKIK 178

Query: 126 FSDLLSVTRQLGADV----LATGHYIRSR-----LYVGDDGKRRRIMC-RPMDLE---RD 172
           F  L    R+ G+      LATGHY R+      ++ GD+ KRR ++  RP        D
Sbjct: 179 FGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDNAKRRLVLLVRPCSAGRDLND 238

Query: 173 QSYFLFATTQQQLCDLRFPLGDMK--KESVRDLAR-EMGL-------------------D 210
           Q+ FL       L    FPLG +   K  VR LAR   G                     
Sbjct: 239 QTVFLSRVPPSALATAIFPLGHLFTCKADVRALARHSFGHSGGTAAVASSDGEPQRTVAH 298

Query: 211 IADKSDSQDICFVQ-------------QGKYFDVVKRI---------------------N 236
           I+ K  S  ICFV                ++   +                         
Sbjct: 299 ISRKKTSTGICFVGPPSAATCAGDTSCSSRFPPFLNEYLPPPPPPPLPSTRTVFCDAVTG 358

Query: 237 AGIALEGDI-VHLNGQILGR-----HNGIIN---------------YTIGQRRGL----- 270
             + + GD   H  G  L       H G +                +T+GQR  L     
Sbjct: 359 EELLVPGDTAEHFAGAPLQPFACRLHRGPMFGALRADYPGLLPAYAFTLGQRVRLCRRTV 418

Query: 271 -GVAMGEPLFVVYL------------DK--------NSSRVIVGPRESLEVHRIYLREIN 309
            G       +V               DK            V       L   +  +  ++
Sbjct: 419 DGRVREAAYYVADKVLAPLPSSDMSDDKAVPVRLLAEVRVVAQWNHALLYASQATVASLH 478

Query: 310 WLGDGL--------FEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDD----------GV 348
           W             + +  V G +C    R  +   P  V+    +++            
Sbjct: 479 WWLPPPVLHQRAVAYHERGVYGLRCHCCTRHQEALQPATVEWEAADEELSADAEVRVRRA 538

Query: 349 YVDFEKSEVGVASGQACVFY 368
            V F+     V  GQA V Y
Sbjct: 539 RVHFDAPLRAVTPGQALVAY 558


>gi|213850128|ref|ZP_03381026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 116

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF   L   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115


>gi|126654200|ref|ZP_01726001.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
 gi|126589339|gb|EAZ83493.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
          Length = 160

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP--- 294
            A  G++  + G ++G+H+G++ YT+GQR GLG+   GEP FV+  D   + ++VG    
Sbjct: 5   PAQPGNMETMYGVVMGKHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVGQGFD 64

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFE 353
            E L    +   ++N+         +   F C  K R  Q   PV V+   DG  ++ F 
Sbjct: 65  NEHLYSTSLSAVKMNYTS----TKKLPGKFSCTAKFRYRQTDTPVEVEILADGRTHITFA 120

Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
           +    +  GQA V Y  +      +GGG I    +S+
Sbjct: 121 EPVRAITPGQAVVLYDGE----ECIGGGTIDEVFKSN 153


>gi|289670488|ref|ZP_06491563.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 130

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+VV +SGGVDSSV A  L + G  + G+ +Q +    A    G C A  D  DA  VC 
Sbjct: 4   RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  +  D+   + + V   F + YAAG TP P V CNR VKF   L   + LGA+ +
Sbjct: 60  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 119

Query: 142 ATGHYIRSRL 151
           ATGHY +   
Sbjct: 120 ATGHYAQVAH 129


>gi|157864414|ref|XP_001680917.1| tRNA-methyl transferase [Leishmania major strain Friedlin]
 gi|68124210|emb|CAJ06972.1| putative tRNA-methyl transferase [Leishmania major strain Friedlin]
          Length = 603

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 159/561 (28%), Gaps = 207/561 (36%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVV--------------AAL------------------ 39
           + +      +R+ + +SGGVDS+V               AAL                  
Sbjct: 1   MSVATTRSQLRIAIGLSGGVDSAVTALVLQRCVHTTLDVAALRCFGGPRAPPPPLLALRA 60

Query: 40  -------LKR-------DG--------YDV-----IGVTLQLYNSRKASKRKGSCCAGQ- 71
                  L          G        YD          ++ ++   A    G C   Q 
Sbjct: 61  AVDAHVPLHELLGKLVTAGEPSITAASYDAAPVQHTPFFMRNWHDDSA--ASGWCVRAQV 118

Query: 72  DVYDARRVCDTI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           D  DA++V  T+            +D    +         ++YAAG T    V CN  +K
Sbjct: 119 DYDDAQQVARTLDLLPRDGTPLPWYDLSSEYVEQCFERMLAAYAAGHTLNVDVLCNSKIK 178

Query: 126 FSDLLSVTRQLGADV----LATGHYIRSR-----LYVGDDGKRRRIMC-RPMDLER---D 172
           F  L    R+ G+      LATGHY R+      ++ GDD KRR ++  RP    R   D
Sbjct: 179 FGALTRALRRTGSVFSETLLATGHYARTWDLPHGVHGGDDAKRRPVLLVRPCSAGRDLND 238

Query: 173 QSYFLFATTQQQLCDLRFPLGDMK--KESVRDLAR-EMG-------------------LD 210
           Q+ FL       L    FPLG +   K  VR LAR   G                     
Sbjct: 239 QTVFLSRVPPSALATAIFPLGHLFTCKADVRALARHSFGQSGSTAAVASSNGEPQRTVAH 298

Query: 211 IADKSDSQDICFVQ-------------QGKYFDVVKRINAGI--------------ALEG 243
           I+ K  S  ICFV                ++   +                     A+ G
Sbjct: 299 ISRKKTSTGICFVGPPSAATCAGNTSCSSRFPLFLNEYLPPPPPPSGPSTRTVFCDAVTG 358

Query: 244 DIVHLNGQILGRH--------------------------NGI---INYTIGQRRGL---- 270
           + + + G     H                           G+     +T+GQR  L    
Sbjct: 359 EELLVPGDT-TEHFAGASLQSSACRLYRGPMCGALRVDYPGLLPAYAFTLGQRVRLCRRT 417

Query: 271 --GVAMGEPLFVVYL-----------D---------KNSSRVIVGPRESLEVHRIYLREI 308
             G       +V              D              V       L   +  +  +
Sbjct: 418 VDGRVREAAYYVADKVLAPLPLSALSDNKAVPVRLLAEVRVVAQWNNALLYTSQATVASL 477

Query: 309 NWLGDGLF--------EDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDD----------G 347
           +W               +  + G +C    R  +   P  V+    +++           
Sbjct: 478 HWWLPLPMLHQRAVVNHERGMYGLRCHCCTRHHEALQPATVEWEAADEELSADAEVRVRR 537

Query: 348 VYVDFEKSEVGVASGQACVFY 368
             V F+     V  GQA V Y
Sbjct: 538 ARVHFDAPLRAVTPGQALVAY 558


>gi|322488380|emb|CBZ23626.1| putative tRNA-methyl transferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 603

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/599 (17%), Positives = 170/599 (28%), Gaps = 227/599 (37%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVV--------------AAL------------------ 39
           + +      +R+ + +SGGVDS+V               AAL                  
Sbjct: 1   MSVATTRSQLRIAIGLSGGVDSAVTALVLQRCVHTTLDVAALHCFGGPHAPPPPLPALQA 60

Query: 40  -------LKR---------------DGYDVIGV-----TLQLYNSRKASKRKGSCCAGQ- 71
                  L +                GY  + V      ++ ++    +   G C   Q 
Sbjct: 61  AVDAHVPLHKLLGKLVTAGGPGIATAGYAAVPVQYTPFFMRNWHDD--NTASGWCVRAQV 118

Query: 72  DVYDARRVCDTI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           D  DA++V   +           ++D+   +         ++YA G T    V CN  +K
Sbjct: 119 DYDDAQQVARALDLLPHDGTPLPLYDFSSEYVEQCFERMLAAYAVGHTLNVDVLCNSKIK 178

Query: 126 FSDLLSVTRQ----LGADVLATGHYIRSRL-----YVGDDGKRRRIMC-RPMDLER---D 172
           F  L    R+        +LATGHY R+       + G+D KRR ++  RP    R   D
Sbjct: 179 FGALTRALRRTRSVFSETLLATGHYARTWHLPRGVHSGEDAKRRPVLLVRPCSAGRDLND 238

Query: 173 QSYFLFATTQQQLCDLRFPLGDMK--KESVRDLARE---MG-----------------LD 210
           Q+ FL       L    FPLG +   K  VR LAR     G                   
Sbjct: 239 QTVFLSRVPPSALARAIFPLGHLFTCKADVRALARHSFGHGSGTAAVASSDGAPQRSVAH 298

Query: 211 IADKSDSQDICFVQ-------------QGKYFDVVKRINAGI--------------ALEG 243
           I+ K  S  ICFV                ++   +                     A+ G
Sbjct: 299 ISQKKTSTGICFVGPPSAAACAGDTSSSSRFPPFLNEYLPPPPPPPLSSTRTVFCDAVTG 358

Query: 244 D--IVHLN-----------------------GQILGRHNGI---INYTIGQRRGL----- 270
           +   V  +                       G +   + G+     +T+GQR  L     
Sbjct: 359 EELFVPEDTAKHFSSAPSQSIACPLRRRPTLGALRADYPGLLPAYAFTLGQRVRLCRRTV 418

Query: 271 -GVAMGEPLFVVYL---------DKNSSRV---------IVGP--RESLEVHRIYLREIN 309
            G       +V              ++  V         +V       L   +  +  ++
Sbjct: 419 GGRVREAAYYVADKVLAPLPSSALSDNKTVPVRLLAEVRVVAQWNNALLYTSQATVESLH 478

Query: 310 WLGDGL--------FEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDD----------GV 348
           W             + +  V   +C    R  +   P  V+    +++            
Sbjct: 479 WWLPPPVLHQRAVAYHERSVYELRCHCCTRHQEALQPATVEWEAADEELSADAEVRVRRA 538

Query: 349 YVDFEKSEVGVASGQACVFY-----------------TSDSNEA-----RVLGGGIISG 385
            V F      V  GQA V Y                   D+  +      V+G G I  
Sbjct: 539 RVHFNAPLRTVTPGQALVAYMPLLELEEGWKKGRDASRGDAEPSPPEAMAVIGSGWIVS 597


>gi|88195431|ref|YP_500235.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87202989|gb|ABD30799.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 100

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           MSGGVDSSV A +LK  GYDVIG+ ++ ++    +   G C A +D  D   VC+ I + 
Sbjct: 1   MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           +Y  ++E+ + + V   F   Y  G TP P V CN+ +KF   
Sbjct: 58  YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAF 100


>gi|154332268|ref|XP_001562508.1| tRNA-methyl transferase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059398|emb|CAM41624.1| putative tRNA-methyl transferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 593

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 152/546 (27%), Gaps = 195/546 (35%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVV--------------AAL-------------------- 39
           + ++P  +R+ + +SGGVDS+V               AAL                    
Sbjct: 1   MTRSP--LRIAIGLSGGVDSAVAALVLERCVHTALDVAALRCFGGPRAPPPPLPTLRAAV 58

Query: 40  -----LKR---------------DGYDVIGV-----TLQLYNSRKASKRKGSCCAGQ-DV 73
                L                  G D   V      +  ++  KA    G C   Q D 
Sbjct: 59  DARIPLHELLGKLVTPGKRDSRVAGCDATPVQYTPFFMHNWHDDKA--ASGWCVRAQVDY 116

Query: 74  YDARRVCDTI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            DA++V  T+            +D+   +          +YA G T    V CN  +KF 
Sbjct: 117 DDAQQVAKTLDLLPRDGTPLPSYDFSSEYAEQCFERMLDAYAVGHTLNVDVLCNSKIKFG 176

Query: 128 DLLSVTRQLGADV----LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLER---DQSY 175
            L    R+ G+      LATGHY R+       + G + ++  ++ RP    R   DQS 
Sbjct: 177 ALTRALRRTGSAFSETLLATGHYARTWNLSRGDHGGSNERQPVLLVRPCSAGRDLNDQSV 236

Query: 176 FLFATTQQQLCDLRFPLGDMK--KESVRDLA-REMGL--------DIADKSDSQDICFVQ 224
           FL       L    FPLG +   K  VR LA    G          I  K  S  ICFV 
Sbjct: 237 FLSRVPPSALASAIFPLGHLFTCKADVRALATHSFGHSGGMAAVAHIPQKKTSTGICFVG 296

Query: 225 QGK-------------YFDVVKRI---------------------NAGIALEGDIVH--- 247
                           +   +                           + + GD      
Sbjct: 297 PPSAVTRAGNTSCSSCFPSFLNEYLPPPRPPLLQSTHTAFCDAVTGEELFVPGDTATHAT 356

Query: 248 --LNGQILGR--HN--------------GIINYTIGQRRGL------GVAMGEPLFVVYL 283
             L   I+GR  H+                  +T+GQR  L      G       +V   
Sbjct: 357 DALPQSIVGRLSHSPPFGALREDYPGCLPAYAFTLGQRVRLCRRTADGRGREAVHYVAGK 416

Query: 284 -----------DKNSSRV-----IVGPRES----LEVHRIYLREIN-WLGDGLFEDAVVD 322
                      D     V     +    E     L   +  +  +  WL   +       
Sbjct: 417 VLAPLPPSALSDGKVPPVRVLAEVQVVAEWNNALLYTSQATVASLRWWLPLPVLHQRAAT 476

Query: 323 -------GFKCFVKIRSSQDPVPVFVQRND-------------DGVYVDFEKSEVGVASG 362
                    +C    R  +   P  V+                    V F+     +  G
Sbjct: 477 CHMHRIYRLRCHCCTRHQEALQPATVEWEAADEEVSADAEVRVTRARVHFDAPLRAITPG 536

Query: 363 QACVFY 368
           QA V Y
Sbjct: 537 QALVAY 542


>gi|256752920|ref|ZP_05493753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748200|gb|EEU61271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 151

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 9/156 (5%)

Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290
           ++KR        G+   ++G+ LG H GII+YTIGQRRGLG++   PL+VV +D  ++ V
Sbjct: 1   MIKRQVKDEIKPGEFRDVHGKFLGYHKGIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVV 60

Query: 291 IVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVY 349
           +VG +E +    +     N++      + +    K   KIR +       ++   +D V 
Sbjct: 61  VVGHQEDVWGEELISSNNNFISI----EKLEKEMKVTAKIRYTAKEEEAIIKPYEEDKVL 116

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           V F K +  +  GQ+ VFY  D     V+GGGII  
Sbjct: 117 VKFLKPQRAITPGQSVVFYDKDV----VVGGGIIER 148


>gi|289803739|ref|ZP_06534368.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 109

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 5/114 (4%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1   MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            DA+ VCD + +  +  ++   + + V   F   Y AG TP P + CN+ +KF 
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFK 109


>gi|119593831|gb|EAW73425.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
           CRA_d [Homo sapiens]
          Length = 203

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 24/196 (12%)

Query: 218 QDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGE 276
             +CF+ +  +   + +        G  + + + ++LG H G   YT+GQR  +G  + E
Sbjct: 1   MGMCFIGKRNFEHFLLQYLQ--PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLRE 57

Query: 277 PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGF-KCFVKIRS 332
           P +VV  D     V V P     +L    +    ++W+ +      V D   +C  + R 
Sbjct: 58  PWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRH 117

Query: 333 SQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII-------- 383
               VP  +  N DG V+V   ++   +A+GQ  VFY  D      LG G I        
Sbjct: 118 QMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGD----ECLGSGKILRLGPSAY 173

Query: 384 ---SGSKRSDAVEESL 396
               G +R+    ES 
Sbjct: 174 TLQKGQRRAGMATESP 189


>gi|312971269|ref|ZP_07785447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
 gi|42583|emb|CAA41994.1| ORF-15 [Escherichia coli K-12]
 gi|310336471|gb|EFQ01657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
          Length = 133

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
           + +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++W+
Sbjct: 1   MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 60

Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370
                 +      +C VK R  Q  +P  V+  +DD + V F++    V  GQ+ VFY  
Sbjct: 61  D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 116

Query: 371 DSNEARVLGGGIIS 384
           +      LGGGII 
Sbjct: 117 EV----CLGGGIIE 126


>gi|294645485|ref|ZP_06723186.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
 gi|292639186|gb|EFF57503.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
          Length = 134

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ RV+V MSGG+DS+    +L+  GY+++GVT++++                   DAR 
Sbjct: 4   RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + + HYV D    F+  ++  F   Y  G TP PCV CN   KF  L     +L  
Sbjct: 50  LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM 167
             +ATGHY R       + K+R+ +    
Sbjct: 110 AWVATGHYSRL------EEKKRKHLYSSR 132


>gi|260889734|ref|ZP_05900997.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
 gi|260860340|gb|EEX74840.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
          Length = 135

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 18/141 (12%)

Query: 253 LGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYL 305
           LG HNG++ YTIGQR+G+G+       GEP FVV  D   + +IV  G    L    +  
Sbjct: 2   LGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLIA 61

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364
            + N++ +  F        +C VK R  Q      + + N++   V F++ +  V  GQ 
Sbjct: 62  TDFNFINEVRF------PLECTVKFRYRQKDTKAVINKLNENEYEVIFDEPQKAVTLGQI 115

Query: 365 CVFYTSDSNEARVLGGGIISG 385
            V Y  +      LGGGII  
Sbjct: 116 VVAYDGEI----CLGGGIIDK 132


>gi|303325418|ref|ZP_07355861.1| tRNA methyl transferase [Desulfovibrio sp. 3_1_syn3]
 gi|302863334|gb|EFL86265.1| tRNA methyl transferase [Desulfovibrio sp. 3_1_syn3]
          Length = 372

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 103/214 (48%), Gaps = 5/214 (2%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR+ VA+SGGVDS     LL+R G+DV+ +       +   +  G+C     +  A   C
Sbjct: 1   MRIAVAVSGGVDSLCALLLLRRAGHDVLALHGFFLPEQSHPRPGGACDPLPGLEAA---C 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +++  +  D    F+  V++PFA SYA G TP PC  CNR VKF  LL     LGAD 
Sbjct: 58  RALDIPLHTVDLRAVFQREVMIPFARSYAEGRTPNPCARCNRAVKFGALLDAALALGADK 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LATGHY R       +     ++    D  +DQSYFL      +L    FPL D  K   
Sbjct: 118 LATGHYARLLPGRNGEKDAPPVLAAAHDRAKDQSYFLSLVPAARLRHAFFPLADQDKARS 177

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGK--YFDVV 232
             L    GL +    +SQDICFV +    Y   +
Sbjct: 178 VALVAAAGLAVPLPRESQDICFVPENDAAYRPFL 211


>gi|51593662|gb|AAH80631.1| TRMU protein [Homo sapiens]
          Length = 222

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 23/193 (11%)

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRI 235
           L   +Q  L    FPLG + KE V+ +A E  L  +  K +S  +CF+ +  +   + + 
Sbjct: 23  LEMVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQY 82

Query: 236 NAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
                  G  + + + ++LG H G   YT+GQR  +G  + EP +VV  D     V V P
Sbjct: 83  LQ--PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAP 139

Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYV 350
                +L    +    ++W+ +      V D   +C  + R     V   +Q    G  V
Sbjct: 140 RTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQ----GGRV 195

Query: 351 DFEKSEVGVASGQ 363
                      GQ
Sbjct: 196 ----------PGQ 198


>gi|49471691|gb|AAT66133.1| tRNA (5-methylaminomethyl-2-thiouridyl-methyltransferase-like
           protein [Mycoplasma arthritidis]
          Length = 109

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 7/107 (6%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73
            RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S   +   G+       C   QD 
Sbjct: 3   KRVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDY 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            DA+ V   +N+  Y  D+ + + + V       Y  G TP P + C
Sbjct: 63  VDAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFC 109


>gi|72392431|ref|XP_847016.1| tRNA-methyl transferase [Trypanosoma brucei TREU927]
 gi|62358954|gb|AAX79404.1| tRNA-methyl transferase, putative [Trypanosoma brucei]
 gi|70803046|gb|AAZ12950.1| tRNA-methyl transferase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 557

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 144/472 (30%), Gaps = 138/472 (29%)

Query: 50  VTLQLYNS--RKASKRKGSCCA--------------GQDVYDARRVCDTINV-----SHY 88
           + ++ ++     +       C                QD +DA  V     +     +  
Sbjct: 85  LFMKNWDDVSEDSDGSASDTCENVGGNHRRRWCEAAEQDYHDAAEVARFAGLLSESEALP 144

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-ADVLATGHYI 147
           +F++   +  +      +SYA G T    V CN  +KF  LL      G A  +ATGHY 
Sbjct: 145 LFNFSSHYVTSCFDRMLNSYARGNTLNVDVLCNSEIKFGALLHALHTSGRAQYVATGHYA 204

Query: 148 RSRLYVGD-----------DGKRRRIMCRPMDLE---RDQSYFLFATTQQQLCDLRFPLG 193
           R+                 +G+  R++ RP        DQ+ FL   +Q QL ++ FPLG
Sbjct: 205 RTISLADTVFCSAAASESGNGRYTRVIARPFTAGQDLNDQTLFLSRLSQLQLSNVIFPLG 264

Query: 194 DM--KKESVRDLAREMGLD-IADKSDSQDICFVQQ---------GKYFDVVKRINAGIAL 241
            +  +K  VR +A  +GL  ++ K  S  +CFV +         G +   +    A    
Sbjct: 265 HVFQRKADVRVVASHLGLTRVSAKKTSTGLCFVGERYKRKSGKGGGFGAFLTEYMASAPE 324

Query: 242 E--GDIVHLN----------------------GQILGRHNGI---INYTIGQR-RGLGVA 273
           E  G+ VH +                      G +  +   +      T+GQR RG    
Sbjct: 325 ESGGEGVHADEETKYLDAETEQIIAADQLNIPGIVRRQDRTLLPAHYLTVGQRIRGAAGN 384

Query: 274 MGEP--LFVVYLDKN----------------SSRVIVG---PRESLEVHRIYLREINWL- 311
            G P   +V   + +                   V +        L    + L ++    
Sbjct: 385 SGSPRCYYVQRKEVSPIHGYEKCGENCCIRYLRNVWLVNRWNHPLLYNTLVKLSDVVLPL 444

Query: 312 ----------------GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---------- 345
                                E+      +C    R      P  ++             
Sbjct: 445 RMTQLLMLSLAFPPSRSPRHGEEGEEVCLRCSCCTRHQDPLHPAVLRFRACEVQEFAGGT 504

Query: 346 --DGVYVDFEKSEVGVASGQACVFY------------TSDSNEARVLGGGII 383
             +   V+F+       +GQ  V Y               S    V+  G I
Sbjct: 505 SVNFAVVEFDTPVRAATAGQTLVGYCPINPVTLSVSSAVHSASWYVVASGWI 556



 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          RV VA+SGGVDS+V A  L R       V+   +   +A  R         V DA
Sbjct: 7  RVAVALSGGVDSAVAALFLCR------CVS--TWRDVEALWRSPRPLPLDTVMDA 53


>gi|261330212|emb|CBH13196.1| tRNA-methyl transferase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 557

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 142/472 (30%), Gaps = 138/472 (29%)

Query: 50  VTLQLYNS---RKASKRKGSCCA-------------GQDVYDARRVCDTINV-----SHY 88
           + ++ ++            +C                QD +DA  V     +     +  
Sbjct: 85  LFMKNWDDVSEGSDGSASDTCENIGGNQRRRWCEAAEQDYHDAAEVARFAGLLSESEALP 144

Query: 89  VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-ADVLATGHYI 147
           +F++   +  +      +SYA G T    V CN  +KF  LL      G A  +ATGHY 
Sbjct: 145 LFNFSSHYVTSCFDRMLNSYARGNTLNVDVLCNSEIKFGALLHALHTSGRAQYVATGHYA 204

Query: 148 RSRLYVGD-----------DGKRRRIMCRPMDLE---RDQSYFLFATTQQQLCDLRFPLG 193
           R+                 +G+  R++ RP        DQ+ FL   ++ QL ++ FPLG
Sbjct: 205 RTISLADTVFCSAAASESGNGRYTRVIARPFTAGQDLNDQTLFLSRLSRLQLSNVIFPLG 264

Query: 194 DM--KKESVRDLAREMGLD-IADKSDSQDICFVQQG---------KYFDVVKRINAGIAL 241
            +  +K  VR +A  +GL  ++ K  S  +CFV +           +   +    A    
Sbjct: 265 HVFQRKADVRVVASHLGLTRVSAKKTSTGLCFVGERYKRKAGKGGGFGAFLTEYMASAPE 324

Query: 242 E--GDIVHLN----------------------GQILGRHNGI---INYTIGQR-RGLGVA 273
           E  G  VH +                      G +  +   +      T+GQR RG    
Sbjct: 325 ESGGKGVHADEETKYLDAETEQIIAADQLNIPGTVRRQDRTLLPAHYLTVGQRIRGAVGN 384

Query: 274 MGEP--LFVVYLDKN----------------SSRVIVG---PRESLEVHRIYLREINWL- 311
            G P   +V   + +                   V +        L    + L ++    
Sbjct: 385 SGSPRCYYVQRKEVSPIHGYEKCGENCCIRYLRNVWLVNRWNHPLLYNTLVKLSDVVLPL 444

Query: 312 ----------------GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---------- 345
                                E+      +C    R      P  ++             
Sbjct: 445 RMTQLLMLSLAFPPSRSPRHGEEGEEVCLRCSCCTRHQDPLHPAVLRFRACEVQEFAGGT 504

Query: 346 --DGVYVDFEKSEVGVASGQACVFY------------TSDSNEARVLGGGII 383
             +   V+F+       +GQ  V Y               S    V+  G I
Sbjct: 505 SVNFAVVEFDTPVRAATAGQTLVGYCPINPVTLSVSSAVHSASWYVVASGWI 556



 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          RV VA+SGGVDS+V A  L R       V+   +   +A  R         V DA
Sbjct: 7  RVAVALSGGVDSAVAALFLCR------CVS--TWRDVEALWRSPRPLPLDTVMDA 53


>gi|170046207|ref|XP_001850666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
 gi|167869052|gb|EDS32435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex
           quinquefasciatus]
          Length = 126

 Score =  151 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS+V A LLKR G+DV    ++ ++        G C   QD  DA+++C  +++     +
Sbjct: 14  DSAVTAYLLKRKGFDVRAAFMKNWD---LIDENGYCSGEQDWLDAQKLCRQLDIPLEQVN 70

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHY 146
           + + +   V   F   Y+AG TP P + CNR +KF+      R+ +GAD + TGHY
Sbjct: 71  FVKDYWLEVFGSFLKDYSAGITPNPDMLCNRRIKFNLFNKHARERMGADAIVTGHY 126


>gi|320534234|ref|ZP_08034749.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133539|gb|EFW25972.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 131

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79
           MRV+ A+SGGVDS+V AA     G++V+GV + L  +R  +      CC+ +D  DAR  
Sbjct: 1   MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRTQTRSGSRGCCSIEDSADARWA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +  YV+D  E F   V+  F   Y AG TP PCV CN  VKF  LL     LG D
Sbjct: 61  AQILGIPFYVWDLSEEFEERVVADFLDEYRAGRTPNPCVRCNERVKFDALLERALALGFD 120

Query: 140 VLATGHYIR 148
            +ATGHY R
Sbjct: 121 AVATGHYAR 129


>gi|289763200|ref|ZP_06522578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
 gi|289710706|gb|EFD74722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
          Length = 251

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 10/201 (4%)

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           FP+GD  K  +R  A            +    F+  G     +          G +V  +
Sbjct: 46  FPIGDTPKRQIRAEAAAAAWRSPTSRIATTSAFIPSGNTKAFLGERIG--VRRGVVVDAD 103

Query: 250 GQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305
           G +L  H+G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V  +  
Sbjct: 104 GVVLASHDGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTG 163

Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365
           R   +        A      C V++R+  + V    +   D ++V       GVA GQ  
Sbjct: 164 RAPVFTAGA----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTL 219

Query: 366 VFYTSDSNEARVLGGGIISGS 386
           V Y  D     VLG   I+G+
Sbjct: 220 VLYRPDPAGDEVLGSATIAGA 240


>gi|156093385|ref|XP_001612732.1| tRNA methyl transferase [Plasmodium vivax SaI-1]
 gi|148801606|gb|EDL43005.1| tRNA methyl transferase, putative [Plasmodium vivax]
          Length = 837

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 110/273 (40%), Gaps = 47/273 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           VVSE + L ++      +  RV   +SGGVDS +   LL+R  + V    L   +     
Sbjct: 221 VVSELSSLYTIH-----QYPRVAHMLSGGVDSLMALRLLERKKFYVHNFYLHFAHQD--- 272

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                 C+  D+   +++C     + ++ +  E +   V++P   SY+ G+ P   + CN
Sbjct: 273 ------CSKSDLQYVKQICSKRK-NLFIVNVNEEYTEQVLIPMLRSYSEGQIPNADILCN 325

Query: 122 RTVKFSDLLSVTRQL------GADV--LATGHYIRSRLYVGDDGKR-------------- 159
             VK+  L+   R+L      G +   ++TGHY         +  R              
Sbjct: 326 EKVKYHLLMRTMRKLCRERGGGWNYSYVSTGHYAMISTNDEANANRLFNGNFPYVGDELD 385

Query: 160 ----------RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
                     R  +    D  +DQ++FL + +++QL    FPL   +K  V+ +      
Sbjct: 386 GEIPRRGPRKRYKLIVGRDERKDQTFFLSSFSEKQLSKFLFPLCLRRKSDVKRIMERRAA 445

Query: 210 DIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
              ++ +++ +C   +     ++     G A+E
Sbjct: 446 GQYNRRETRGLCLYGRVDMHSLLGLYLGGAAVE 478



 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 69/253 (27%), Gaps = 92/253 (36%)

Query: 227 KYFDVVKRINA--GIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGE------- 276
           ++    ++      +  +  I+ + +G ++  + G+  Y IGQ++ +   + +       
Sbjct: 557 EFRAFREKHLPSFNLRFKNYIISVEDGTVMDTNEGVHLYAIGQKKYITNHLHQLYNSKGK 616

Query: 277 ------------------PLFVVYL--------DKNSSRVIVGP--RESLEVH---RIYL 305
                                VVY         +   + + V       L      R  L
Sbjct: 617 GRGRGRGGACEKNVTSSCQWTVVYKKMLRRASGNVKENFIYVSRDYESGLFRQLRGRCRL 676

Query: 306 REINWLGDGLF------------------EDAVVDGFKCF---------VKIRSSQDPVP 338
               W+                       + A+                VK+R+S++   
Sbjct: 677 GAFRWVASAPPSHLGEAEAEKRQTVPLAVQPAMPLTMPLTVPPIGRPICVKVRNSEEIKE 736

Query: 339 VFVQRNDDG--VYVDFEKSEVGVASGQACVFY--------------------TSDSNEA- 375
             +  +D G   Y+   + ++G++ GQ   FY                      +     
Sbjct: 737 AQIALDDAGQTAYLTLRQKDIGLSPGQIVTFYLPFIVKRSGRAKYLYSLRRRKGEEAPPF 796

Query: 376 -RVLGGGIISGSK 387
              LG   I+   
Sbjct: 797 FHCLGSARITNQY 809


>gi|289679183|ref|ZP_06500073.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae FF5]
          Length = 117

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 274 MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKI 330
             +P +V+  D +++ +IVG       L    +   EI W+             +   K+
Sbjct: 1   SDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVNPIDLSSP----RRLTAKV 56

Query: 331 RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
           R  Q   P  +++  DG    F+  +  V  GQ+ VFY  +      LGGG+I  ++   
Sbjct: 57  RYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI----CLGGGVIEIAEPWT 112

Query: 391 AVEE 394
           + ++
Sbjct: 113 SKDK 116


>gi|68073255|ref|XP_678542.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499041|emb|CAH96244.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 750

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 104/268 (38%), Gaps = 41/268 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V   +SGG+DS +   LL++          + Y            C+  D+   + +C 
Sbjct: 379 KVAHMLSGGIDSLMALILLEKK---------KFYIDNFYFNFTYYNCSKNDLKYVKNICK 429

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR------- 134
             N + ++ +  + +   V +P   SY+ G+ P P + CN+ +K++  L   +       
Sbjct: 430 NRN-NLHIININKEYYENVFLPMLRSYSKGQVPNPDIVCNKKIKYNFFLKTIKSMSKLKG 488

Query: 135 -QLGADVLATGHYIRSRLYV----------------------GDDGKRRRIMCRPMDLER 171
            +     ++TGHY                                 K R  +    DL++
Sbjct: 489 KKYNYSYISTGHYAMISTNNPQNCNNIFNNNFPYIKGKMENKDKKKKERCKLIVSSDLKK 548

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231
           DQ++FL + +++QL    FPL    K  +R   ++  +   + ++++ +C         +
Sbjct: 549 DQTFFLSSFSEKQLSKFLFPLSLYNKNYIRMFMKKNNITNYNPNETKGLCLYGNVDMHSL 608

Query: 232 VKRINAGIALEG-DIVHLNGQILGRHNG 258
           +K        +G +I  +      +++G
Sbjct: 609 LKLYFKTKEYDGAEIDGIEKNEAPQNDG 636


>gi|221053929|ref|XP_002261712.1| tRNA methyl transferase [Plasmodium knowlesi strain H]
 gi|193808172|emb|CAQ38875.1| tRNA methyl transferase, putative [Plasmodium knowlesi strain H]
          Length = 906

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 48/256 (18%)

Query: 10  NSLDLDKNPKDMR------VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +SL      K+MR      V   +SGGVDS +   LL++  + V    L   +       
Sbjct: 313 SSLSRQPARKNMRMHQYPRVAHMLSGGVDSLMALRLLEKKKFYVHNFFLHFAHQE----- 367

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
               C+  D+   +++C     + ++ +  E +   V++P   SYA G+ P   + CN  
Sbjct: 368 ----CSKSDLRYVKKICSKRK-NLFIVNINEEYTEQVLIPMLRSYADGQIPNADIMCNEK 422

Query: 124 VKFSDLLSVTRQ--------LGADVLATGHYIRSR---------------LYVGDDGKR- 159
           VK++ L+   ++             ++TGHY                    YVGDD    
Sbjct: 423 VKYNLLMRKMKKLCRERGGRWDYSYVSTGHYAMISTNDVSNANKLFSGNFPYVGDDTDGK 482

Query: 160 --------RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
                   R  +    D+++DQ++FL + +++QL    FPL   +K  ++ +        
Sbjct: 483 MPRRTPRKRYKLVVGRDVKKDQTFFLSSLSEEQLSKFLFPLCLHRKSDIKMVMERREAGK 542

Query: 212 ADKSDSQDICFVQQGK 227
            ++ +++ +C   +  
Sbjct: 543 YNQRETRGLCLYGRVD 558


>gi|289807026|ref|ZP_06537655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 108

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R       D   +  + R +D  +DQSYFL+    +Q+    FP+G+++K
Sbjct: 1   ADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEK 55

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
             VR +A ++GL  A K DS  ICF+ + K+ D + R        G I+ ++G
Sbjct: 56  PQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAHG-PGKIITVDG 107


>gi|153855260|ref|ZP_01996426.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814]
 gi|149752259|gb|EDM62190.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814]
          Length = 86

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76
           +  +VVV MSGGVDSSV A LLK  GYDVIGVT+Q++   + +  +  G CC    V DA
Sbjct: 2   EKKKVVVGMSGGVDSSVAAWLLKNQGYDVIGVTMQIWQDEEEAAMEEHGGCCGLSAVDDA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAV 100
           RRV   +++ +YV ++++ F+   
Sbjct: 62  RRVAAALDIPYYVMNFKKEFKRKC 85


>gi|218754785|ref|ZP_03533581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
          Length = 154

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300
           +V  +G +L  H+G+  +TIGQRRGLG+A     G P +V  +D +++ V VG    L+V
Sbjct: 2   VVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDV 61

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
             +  R   +        A      C V++R+  + V    +   D ++V       GVA
Sbjct: 62  QTLTGRAPVFTAGA----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVA 117

Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386
            GQ  V Y  D     VLG   I+G+
Sbjct: 118 RGQTLVLYRPDPAGDEVLGSATIAGA 143


>gi|194381158|dbj|BAG64147.1| unnamed protein product [Homo sapiens]
          Length = 131

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 52  LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
           ++ ++S       G C A +D  DA RVC  +++  +   Y + + N V   F + Y  G
Sbjct: 1   MKNWDSLDEH---GVCTADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKG 57

Query: 112 ETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR 161
            TP P + CN+ +KFS         LGAD +ATGHY R+ L   +  +++ 
Sbjct: 58  RTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATGHYARTSLEDEEVFEQKH 108


>gi|56756513|gb|AAW26429.1| SJCHGC00881 protein [Schistosoma japonicum]
          Length = 259

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 50/241 (20%)

Query: 189 RFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            FP+G + K  V+ +A+++GL  I  + +S  +CF+ + ++ + +          G    
Sbjct: 1   MFPVGHLLKTQVKQIAQDIGLSRIYSRRESMGMCFIGKRRFSEFIDNYLE--PRPGICKD 58

Query: 248 L-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303
               Q+L  H G+ ++T+GQR  +    G P +V  +D +   + V       SL + + 
Sbjct: 59  FGTDQVLEEHTGVHHFTLGQRVPMKRFSG-PYYVCKMDYHKQIIYVVRDPTHPSLFMRKC 117

Query: 304 YLREINWLGDGLFEDAVVDG--FKCFVKIR-----------------SSQDPVPVFVQRN 344
           +     W+    F    +    F+   K R                   +  V   + ++
Sbjct: 118 WSGPAVWINSKPFSSINLKNIQFQWQNKWRPVRCSLKPFNEISLAAAYVKKDVKRCLSKS 177

Query: 345 DDGVYV-------------------DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           D+   V                   + E     +A GQ C FY  +      LGG +I G
Sbjct: 178 DNAALVNTIDASIEDNREIGPCLSIELEVPMRCLAPGQWCAFYDGNV----CLGGAMICG 233

Query: 386 S 386
           S
Sbjct: 234 S 234


>gi|146077335|ref|XP_001463247.1| tRNA-methyl transferase [Leishmania infantum JPCM5]
          Length = 332

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 91/263 (34%), Gaps = 81/263 (30%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA--------------AL------------------ 39
           + +      +R+ + +SGGVDS+V A              AL                  
Sbjct: 1   MSVATTRSQLRIAIGLSGGVDSAVTALVLQRCVHTTLDVAALRCFGGPRAPPPPLRALRA 60

Query: 40  -------LKR---------------DGYDV-----IGVTLQLYNSRKASKRKGSCCAGQ- 71
                  L                  GYD          ++ ++   A    G C   Q 
Sbjct: 61  AVDAHVPLHELLGKLVTAGEPGIAAAGYDAAPVQYTPFFMRNWHDDNA--ASGWCERAQV 118

Query: 72  DVYDARRVCDTI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           D  DA++V   +           ++D    +         ++YAAG T    V CN  +K
Sbjct: 119 DYDDAQQVARALDLLPRDGTPLPMYDLSSEYVGQCFERMLAAYAAGHTLNVDVLCNSKIK 178

Query: 126 FSDLLSVTRQLGADV----LATGHYIRSR-----LYVGDDGKRRRIMC-RPMDLER---D 172
           F  L    R+ G+      LATGHY R+      ++ GD+ KRR ++  RP    R   D
Sbjct: 179 FGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDNAKRRLVLLVRPCSAGRDLND 238

Query: 173 QSYFLFATTQQQLCDLRFPLGDM 195
           Q+ FL       L    FPLG +
Sbjct: 239 QTVFLSRVPPSALATAIFPLGHL 261


>gi|70952350|ref|XP_745349.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525644|emb|CAH76839.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 601

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 94/245 (38%), Gaps = 41/245 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V   +SGG+DS +   LL++          + Y            C+  D+   + +C 
Sbjct: 260 KVAHMLSGGIDSLMALILLEKK---------KFYVDNFYFNFAHYDCSKNDLKYVKNICK 310

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR------- 134
               + ++ +    +   V +P   SY+ GE P P + CN+ +K++ LL   +       
Sbjct: 311 NR-NNLHIININNEYYENVFLPMLKSYSKGEVPNPDIVCNQKIKYNFLLKTIKSISKSKG 369

Query: 135 -QLGADVLATGHYIRSRLYVGDDGKR-----------------------RRIMCRPMDLE 170
                  ++TGHY         +                          R  +    DL+
Sbjct: 370 TDFNYSYISTGHYAMISTNDAQNCNNIFNNNFPYVKGKMGNKKNKKNKKRYKLVVSSDLK 429

Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
           +DQ++FL + +++QL    FPLG   K  ++   ++  +   + ++++ +C         
Sbjct: 430 KDQTFFLSSFSEKQLSKFLFPLGLYNKNDIKTFMKKHNITDYNPNETKGLCLYGNVDMHS 489

Query: 231 VVKRI 235
           +++  
Sbjct: 490 LLRLY 494


>gi|82594890|ref|XP_725616.1| tRNA-methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480689|gb|EAA17181.1| probable tRNA-methyltransferase [Plasmodium yoelii yoelii]
          Length = 782

 Score =  129 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 108/291 (37%), Gaps = 57/291 (19%)

Query: 12  LDLDKNPK---DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           ++  KN K     +V   +SGGVDS +   LL++          + Y            C
Sbjct: 364 INFTKNMKIYCYPKVAHMLSGGVDSLMALILLEKK---------KFYIDNFYFNFTHYNC 414

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           +  D+   + +C     + ++ +    +   V +P   SY+ G+ P P + CN+ +K++ 
Sbjct: 415 SKNDLKYVKNICKNR-NNLHIININNEYYENVFLPMLRSYSKGQVPNPDIVCNKKIKYNF 473

Query: 129 LLSVT--------RQLGADVLATGHYIRSRLYVGD------------------------- 155
            L           ++     ++TGHY        +                         
Sbjct: 474 FLKTIKKMSKIKGKKFNYAYISTGHYAMISTNNSENCNNLFNNNFPYIKGKNEKKIKNKN 533

Query: 156 --------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
                     + R  +    DL++DQ++FL + +++QL    FPL    K  ++   ++ 
Sbjct: 534 INKIKDKNKIRERCKLVVSNDLKKDQTFFLSSFSEKQLSKFLFPLSLYNKNYIKLFMKKN 593

Query: 208 GLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
            +   + ++++ +C         ++K    G    G+    +G+  G  +G
Sbjct: 594 NITNYNPNETKGLCLYGNVNMHSLLKLYFKGEEQSGE---QSGEQSGEQSG 641


>gi|196020529|ref|XP_002119101.1| hypothetical protein TRIADDRAFT_63064 [Trichoplax adhaerens]
 gi|190576957|gb|EDV18413.1| hypothetical protein TRIADDRAFT_63064 [Trichoplax adhaerens]
          Length = 116

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 8/119 (6%)

Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325
           QR+G+G++  +PL+V+ +D  +++VIVG +E L+  ++ ++++NWL +    +A+     
Sbjct: 1   QRKGIGISNNKPLYVIKIDPITNKVIVGEKEDLKSTKLKIKDLNWLSND---EALEKDIS 57

Query: 326 CFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
           C V++RS+   +   V+   +G+  V  +    G+  GQACV Y  D    RVLGGG I
Sbjct: 58  CSVRLRSNHKEINADVKYLGNGIADVILKSPYYGITPGQACVIYDKD----RVLGGGWI 112


>gi|224419183|ref|ZP_03657189.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT
           98-5491]
          Length = 155

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 234 RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV 292
           + +     +GD++   G  +G H G + YTIG+R+G  +     P +V+ ++   + +I 
Sbjct: 5   KKHHKTEQKGDVLDSKGNKIGTHKGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIA 64

Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----V 348
           G +E L  +++    ++   +   ++ V+D   C VKIR     +P  +    +G    +
Sbjct: 65  GSKEELATNKVQALNLSLPKEWFQDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDII 121

Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             + ++S  GVA+GQA V Y  +     VLGGG I
Sbjct: 122 TANLKESAYGVANGQALVLYNGN----EVLGGGFI 152


>gi|218754787|ref|ZP_03533583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium tuberculosis GM 1503]
          Length = 85

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84
           MSGGVDSSV AA +   G++V+GV + L ++   + R GS  CC+ +D  DARRV D + 
Sbjct: 1   MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAA 110
           +  YV+D+ E+F+  VI  F SSYA 
Sbjct: 60  IPFYVWDFAEKFKEDVINDFVSSYAR 85


>gi|149001780|ref|ZP_01826753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
 gi|147760238|gb|EDK67227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
          Length = 90

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358
               +   ++++  +   E       +C  K R  Q    V V    D   V F + +  
Sbjct: 1   MSTSLEASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRA 56

Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396
           +  GQA VFY  +      LGGG+I  + R   V + +
Sbjct: 57  ITPGQAVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 90


>gi|83776736|gb|ABC46690.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase
           precursor transcript variant 1 [Homo sapiens]
 gi|83776738|gb|ABC46691.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase
           precursor transcript variant 2 [Homo sapiens]
          Length = 99

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV A+SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIV 102
            +++  +   Y + + N V  
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFR 83


>gi|313142687|ref|ZP_07804880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131718|gb|EFR49335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter canadensis MIT 98-5491]
          Length = 140

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
           ++   G  +G H G + YTIG+R+G  +     P +V+ ++   + +I G +E L  +++
Sbjct: 1   MLDSKGNKIGTHKGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKV 60

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGV 359
               ++   +   ++ V+D   C VKIR     +P  +    +G    +  + ++S  GV
Sbjct: 61  QALNLSLPKEWFQDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGV 117

Query: 360 ASGQACVFYTSDSNEARVLGGGII 383
           A+GQA V Y  +     VLGGG I
Sbjct: 118 ANGQALVLYNGN----EVLGGGFI 137


>gi|55379466|ref|YP_137316.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049]
 gi|55232191|gb|AAV47610.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049]
          Length = 290

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 40/193 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL     YD +G      +   A   K       ++ DA RV + 
Sbjct: 21  VLIAFSGGVDSSVVAALA----YDALG------DDAIACTAKSETLPAAELTDATRVAEE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E      +             + C  C R+++   +    R+LG D++ 
Sbjct: 71  IGIRHEIVEFSELDSEEFMQ---------NDDMRCYHC-RSMRLGAMYDRARELGIDIVC 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G+  R   R ++     S  L                D++K  VR+
Sbjct: 121 DG------TNASDTGEGHRPGLRAVEELDAYSPLLE--------------HDIEKSEVRE 160

Query: 203 LAREMGLDIADKS 215
           +ARE  L +ADK 
Sbjct: 161 IAREYDLSVADKP 173


>gi|83776740|gb|ABC46692.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase
           precursor transcript variant 3 [Homo sapiens]
          Length = 99

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VV ++SGGVDS+V A LL+R GY V GV ++ ++S       G C A +D  DA RVC 
Sbjct: 6   HVVCSLSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62

Query: 82  TINVSHYVFDYEERFRNAVIV 102
            +++  +   Y + + N V  
Sbjct: 63  ILDIPFHQVSYVKEYWNDVFR 83


>gi|257387062|ref|YP_003176835.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halomicrobium mukohataei DSM 12286]
 gi|257169369|gb|ACV47128.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halomicrobium mukohataei DSM 12286]
          Length = 289

 Score =  117 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 40/193 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL              L +   A   K       ++ DA RV D 
Sbjct: 21  VLIAFSGGVDSSVVAALAHDA----------LGDDAVACTAKSETLPEAELVDANRVADE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E    A +               C  C R+++ S +    R+LG DV+ 
Sbjct: 71  IGIRHEIVEFSELDSEAFV---------ANDDERCYHC-RSMRLSAMYDEARRLGIDVVC 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G+  R   R ++     S  L                D+ KE VR+
Sbjct: 121 DG------TNASDPGEGHRPGLRAVEELNAYSPLLE--------------HDITKEEVRE 160

Query: 203 LAREMGLDIADKS 215
           +ARE  L +ADK 
Sbjct: 161 IAREYDLSVADKP 173


>gi|284163472|ref|YP_003401751.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM
           5511]
 gi|284013127|gb|ADB59078.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM
           5511]
          Length = 313

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 73/194 (37%), Gaps = 42/194 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VA SGGVDSSVVAAL     G D +  T            K       ++ DARRV D
Sbjct: 21  VLVAFSGGVDSSVVAALAHDALGEDAVACT-----------AKSETLPEAELEDARRVAD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H +  + E   +  +           T          ++  ++L   R++G + +
Sbjct: 70  EIGIRHEIVSFSELESDDFVENDDDRCYHCRT----------MRLGEMLETAREVGVETV 119

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G          D G   R   + ++     S  L                D+ KE VR
Sbjct: 120 CDG------TNADDPGAGHRPGLQAVEELEVHSPLLA--------------HDVTKEEVR 159

Query: 202 DLAREMGLDIADKS 215
           ++A   GL +ADK 
Sbjct: 160 EIADRYGLSVADKP 173


>gi|289806672|ref|ZP_06537301.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 80

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363
            ++++W+      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ
Sbjct: 1   AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 56

Query: 364 ACVFYTSDSNEARVLGGGIIS 384
           + VFY+ +      LGGGII 
Sbjct: 57  SAVFYSGEV----CLGGGIIE 73


>gi|323209874|gb|EFZ94790.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 78

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365
           +++W+      +      +C VK R  Q  +P  +   +DD + V F++    V  GQ+ 
Sbjct: 1   QLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSA 56

Query: 366 VFYTSDSNEARVLGGGIIS 384
           VFY+ +      LGGGII 
Sbjct: 57  VFYSGEV----CLGGGIIE 71


>gi|169840171|ref|ZP_02873359.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [candidate division TM7 single-cell isolate TM7a]
          Length = 101

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 281 VYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340
           + + KN   V  G    L    +   + N++ +  F        +C VK R  Q      
Sbjct: 3   IRIGKNELIVTQGDNSVLYSKGLIATDFNFINEVQF------PLECTVKFRYRQKDTKAV 56

Query: 341 V-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           + + +++   V F++ +  V  GQ  V Y  +      LGGG+I  
Sbjct: 57  INKLDENEYEVIFDEPQKAVTLGQIVVAYDGEV----CLGGGVIDK 98


>gi|289581720|ref|YP_003480186.1| asparagine synthase [Natrialba magadii ATCC 43099]
 gi|289531273|gb|ADD05624.1| asparagine synthase [Natrialba magadii ATCC 43099]
          Length = 317

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 40/193 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSSVVAAL              L +   A   K       ++ DA RV D 
Sbjct: 59  VLVAFSGGVDSSVVAALAHDA----------LGDDAVACTAKSETLPEAELEDATRVADE 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H +  + E   +  +           T          ++  +++   R LG + + 
Sbjct: 109 IGIRHEIVSFSELESDQFVENDDERCYHCRT----------MRLGEMIETARDLGIETVC 158

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G   R   + ++     S  L                D+ K+ VR 
Sbjct: 159 DG------TNADDPGAGHRPGLQAVEELEIHSPLLA--------------HDIAKDEVRA 198

Query: 203 LAREMGLDIADKS 215
           +A + GL +ADK 
Sbjct: 199 IADQYGLSVADKP 211


>gi|207110357|ref|ZP_03244519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 110

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 8/117 (6%)

Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309
           +I+G H G + YTIG+R+G  +    EP FVV +D   + ++VG +E L  H +  +  +
Sbjct: 1   EIIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAQNKS 60

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366
            + D           + F+K R    PV  FV   D+ + V+F++   GVA GQA V
Sbjct: 61  LMKDF-------KSGEYFIKARYRSVPVKAFVSLKDEVIEVEFKEPFYGVAKGQALV 110


>gi|207092518|ref|ZP_03240305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 81

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K             + +A++ C
Sbjct: 1   MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYA 109
           + + +   V D+++ F++AV   F ++Y 
Sbjct: 53  EFLGIPLEVLDFQKDFKSAVYDEFINAYE 81


>gi|213022904|ref|ZP_03337351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Salmonella enterica subsp. enterica serovar Typhi str.
          404ty]
          Length = 72

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + ++PK  +V+V MSGGVDSSV A LL++ GY V G+ ++ +      +    C A  D+
Sbjct: 1  MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55

Query: 74 YDARRVCDTINVSHYVF 90
           DA+ VCD + +  +  
Sbjct: 56 ADAQAVCDKLGIELHTV 72


>gi|313124829|ref|YP_004035093.1| hypothetical protein Hbor_00410 [Halogeometricum borinquense DSM
           11551]
 gi|312291194|gb|ADQ65654.1| conserved hypothetical protein TIGR00268 [Halogeometricum
           borinquense DSM 11551]
          Length = 302

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 71/195 (36%), Gaps = 44/195 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL              L +   A   K      +++ DARRV D 
Sbjct: 31  VLIAFSGGVDSSVVAALAHDA----------LGDDAIACTAKSETLPTEELDDARRVADE 80

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E      +           T          ++   +    R+ G + + 
Sbjct: 81  IGIRHEIVEFSELDNPDFVANDGDRCYHCRT----------MRLGRMYDAARERGIETVC 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G+  R   R ++                   +  PL   D+ KE V
Sbjct: 131 DG------TNASDPGEGHRPGLRAVEELE----------------VLSPLLTHDISKEEV 168

Query: 201 RDLAREMGLDIADKS 215
           R +A   GL +ADK 
Sbjct: 169 RAIADSYGLSVADKP 183


>gi|257438705|ref|ZP_05614460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198840|gb|EEU97124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 170

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 33/200 (16%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T L     D   +  +V+V + GG        +L++ G+ V+G  ++L            
Sbjct: 4   TFLPGSGFDTYEQQDKVLVGLCGGTGCKAAVRILQQQGFAVMGAVVRL------------ 51

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C     V  A+     + +     +  E           +S  A ET  P       ++F
Sbjct: 52  CTDDPVVDAAKEAAKALGIECITLNASE----------LASQLAEETAAP-----ADLRF 96

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             LL+   +LG   +ATGH  R+R+  G DG    ++C       D+S  L A  Q+ L 
Sbjct: 97  PALLAAADRLGIQYIATGH--RARVETGADG--VHVLCPA--EIADESARLAALPQETLG 150

Query: 187 DLRFPLGDMKKESVRDLARE 206
            L  PLGD   E V ++A E
Sbjct: 151 RLILPLGDFSPEDVAEMAAE 170


>gi|292654369|ref|YP_003534266.1| hypothetical protein HVO_0190 [Haloferax volcanii DS2]
 gi|291372836|gb|ADE05063.1| conserved hypothetical protein TIGR00268 [Haloferax volcanii DS2]
          Length = 298

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 44/195 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDSSVVAAL              L +   A   K       ++ DA+RV + 
Sbjct: 23  VLIAFSGGVDSSVVAALAHEA----------LGDDAVACTAKSETLPDAELDDAKRVAEE 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H   ++ E      +           T          ++   +    R  G + + 
Sbjct: 73  IGIEHLTVEFSELDNPDFVANDDDRCYHCRT----------MRLGRMYEAARDRGIEAVC 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G+  R   R ++                   +  PL    + KE V
Sbjct: 123 DG------TNASDPGEGHRPGLRAVEELE----------------VLSPLLAHGITKEEV 160

Query: 201 RDLAREMGLDIADKS 215
           R +A +  L +ADK 
Sbjct: 161 RAIADDYDLSVADKP 175


>gi|126642474|ref|YP_001085458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Acinetobacter baumannii ATCC 17978]
 gi|126388358|gb|ABO12856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Acinetobacter baumannii ATCC 17978]
          Length = 64

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RV+V MSGGVDSSV AALL + GY V G+ ++ +     ++    C A +D+ DA+ V
Sbjct: 2  QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58

Query: 80 CDT 82
           D 
Sbjct: 59 ADK 61


>gi|160943988|ref|ZP_02091218.1| hypothetical protein FAEPRAM212_01489 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444664|gb|EDP21668.1| hypothetical protein FAEPRAM212_01489 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104809|emb|CBL02353.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 180

 Score =  102 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 30/195 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
             D      +V+V+M G VD  VV  +L++ G+ V G  +QL   + A        A   
Sbjct: 10  GFDTYETQDKVLVSMDGSVDCGVVVRILQQQGFGVAGAVVQLAADQSAWAAAARQAAEA- 68

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     + +   V   E                  + P   +      +F+ LL+ 
Sbjct: 69  ----------LGIECIVLKAEAL---------------ADQPAEVLGSGNDARFAALLTA 103

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LG   +ATGH+ R  L  G DG     +C  +D   D+S  L A  Q  L  L  PL
Sbjct: 104 ADKLGIQYIATGHHARVEL--GSDG--VHTVCPAVDAALDESAALAALPQDTLARLLLPL 159

Query: 193 GDMKKESVRDLAREM 207
           G+     V+++A++ 
Sbjct: 160 GEFTAADVQEMAQDF 174


>gi|257052111|ref|YP_003129944.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halorhabdus utahensis DSM 12940]
 gi|256690874|gb|ACV11211.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halorhabdus utahensis DSM 12940]
          Length = 276

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 42/194 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VA SGGVDSSVVAA+ +   G D +  T +                  ++ +A+RV +
Sbjct: 25  VLVAFSGGVDSSVVAAIAEDALGADAVACTAR-----------SETLPEAELQEAKRVAE 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + ++ E    A I               C  C R+++ S +    ++L  + +
Sbjct: 74  EIGIRHDIVEFSELESEAFIENDGDR---------CYHC-RSMRLSAMYDRAKELDIETV 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G          D G+  R   + ++     S  L                D+ KE VR
Sbjct: 124 CDG------TNAADPGEGHRPGLQAVEELDATSPLLE--------------HDITKEEVR 163

Query: 202 DLAREMGLDIADKS 215
           ++A    L +A+K 
Sbjct: 164 EIADHYDLSVAEKP 177


>gi|322368177|ref|ZP_08042746.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haladaptatus paucihalophilus DX253]
 gi|320552193|gb|EFW93838.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haladaptatus paucihalophilus DX253]
          Length = 320

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 65/193 (33%), Gaps = 40/193 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSSVVAA+              L +   A   K       ++ DA RV D 
Sbjct: 21  VLVAFSGGVDSSVVAAIAHDA----------LGDDAVACTAKSETLPEAELGDANRVADE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H V ++ E      +           T          ++   +     +L  D++ 
Sbjct: 71  IGIRHVVAEFSELDDPNFVENGDDRCYHCRT----------MRLGAMFDKAAELDIDIVC 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D     R   R ++     S  L                D+ K  VR+
Sbjct: 121 DG------TNADDVSAGHRPGLRAVEELDAYSPLLQ--------------HDISKAEVRE 160

Query: 203 LAREMGLDIADKS 215
           +A    L +ADK 
Sbjct: 161 IAEAYDLSVADKP 173


>gi|182420268|ref|ZP_02951497.1| tRNA methyl transferase [Clostridium butyricum 5521]
 gi|237666593|ref|ZP_04526578.1| tRNA methyl transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375863|gb|EDT73455.1| tRNA methyl transferase [Clostridium butyricum 5521]
 gi|237657792|gb|EEP55347.1| tRNA methyl transferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 329

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 53/256 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G DVIG+  + Y   + +              A+R+ 
Sbjct: 2   TRALAMISGGLDSILAAKLIKEQGIDVIGICFRSYFFNEEN--------------AKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I +   V D+ +   + V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIGIPLEVIDFSKEHFDMVKSP---EHGWGKNMNPCIDCHAMMMRYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---------LFATTQQQL----- 185
            + TG  +  R    +           +D+ + QS F                Q+     
Sbjct: 103 FIITGEVLNQRPMSQN--------RSALDVVKKQSGFSDKILRPLCAKNLKATQMEEDGL 154

Query: 186 ---CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN--AGIA 240
                L    G  +K  +  LA + G  I D       C + +  Y   +K +    G A
Sbjct: 155 VDREKLLDISGRNRKPQM-ALAEKWG--IKDYPSPAGGCKLTEPNYSIRLKDVLDRKGDA 211

Query: 241 LEGDIVHLNGQILGRH 256
            E DI  L     GRH
Sbjct: 212 TEKDIHLL---KYGRH 224


>gi|300709585|ref|YP_003735399.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3]
 gi|299123268|gb|ADJ13607.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3]
          Length = 288

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 44/195 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSS VAA+     YD +G          A   K       ++ DARRV   
Sbjct: 20  VLVAFSGGVDSSAVAAIA----YDALG------EDAVACTAKSETLPDAELEDARRVAGE 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H + ++ E      +               C  C R+++   +     +LG  V+ 
Sbjct: 70  IGIRHEIVEFSELDDPEFVKNDGDR---------CYHC-RSMRLGKMFERAAELGIPVVC 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G+  R   +           +           R PL   D+ K+ V
Sbjct: 120 DG------TNASDPGEGHRPGLQA----------VAELD------ARSPLLDHDITKDDV 157

Query: 201 RDLAREMGLDIADKS 215
           R++A    L +A+K 
Sbjct: 158 REIAATYDLSVAEKP 172


>gi|222481007|ref|YP_002567244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorubrum lacusprofundi ATCC 49239]
 gi|222453909|gb|ACM58174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 334

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 44/195 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSSVVAAL              L +   A   +       ++ DA RV   
Sbjct: 61  VLVAFSGGVDSSVVAALACDA----------LGDDAVACTARSETLPAAELDDAERVAGE 110

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H    + E      +           T          ++   +    + LG   + 
Sbjct: 111 IGIRHETVTFSELDDPNFVANDGDRCYHCRT----------MRLGQMYETAQDLGIGTVC 160

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G+  R   R ++                  D+  PL   ++ K+ V
Sbjct: 161 DG------TNADDPGEGHRPGLRAVEEL----------------DVFSPLLDAEITKDEV 198

Query: 201 RDLAREMGLDIADKS 215
           R++A    L +ADK 
Sbjct: 199 REIAEAYDLSVADKP 213


>gi|207110156|ref|ZP_03244318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Helicobacter pylori HPKX_438_CA4C1]
          Length = 82

 Score = 98.3 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 7  TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           RL ++  ++  K M++ V +SGGVDSS  A  LK  G++++G+ L+L+ S K       
Sbjct: 6  ARLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-- 62

Query: 67 CCAGQDVYDARRVCDTINVSHYVFDY 92
                + +A++ C+ + +   V D+
Sbjct: 63 ------IKNAQKACEFLGIPLEVLDF 82


>gi|258597066|ref|XP_001347476.2| tRNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|254922434|gb|AAN35389.2| tRNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 1084

 Score = 97.9 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 23/145 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+   +SGGVDS +   LL+R          + Y          + C+  D+   + +C 
Sbjct: 449 RIAHMLSGGVDSLMALHLLERK---------KFYVDNYFFNFTNADCSKNDIKYVKDICK 499

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ------ 135
               + ++ +  + + + V+VP    YA G+ P P + CN+ +K++  L V +       
Sbjct: 500 NNKRNLFIININDEYFDEVLVPMLFFYADGKVPNPDIMCNQKIKYNFFLKVIKSIYKQKW 559

Query: 136 --------LGADVLATGHYIRSRLY 152
                      D ++TGHY   R  
Sbjct: 560 NYRTKSKLCNYDFISTGHYAMIRTN 584



 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%)

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H    +     + K    +    D ++DQ++FL +    QL    FPL    K+ V+   
Sbjct: 639 HNDNIKTNYKKNNKYFYKLLVSNDKKKDQTFFLSSFNHIQLSKFIFPLSLYTKKDVKKYM 698

Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
            E  ++  +  +++ +C         ++ + 
Sbjct: 699 NENNINNYNHKETKGLCLFGNIDMQTLLHKY 729


>gi|289807044|ref|ZP_06537673.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 85

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG 293
            A  G I+ ++G  +G H G++ +T+GQR+GLG+        +P +VV  D  ++ +IV 
Sbjct: 2   PAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVA 61

Query: 294 P---RESLEVHRIYLREINWLGDG 314
                  L    +  ++++W+   
Sbjct: 62  QGHEHPRLMSVGLIAQQLHWVDRP 85


>gi|170757780|ref|YP_001779756.1| hypothetical protein CLD_0657 [Clostridium botulinum B1 str. Okra]
 gi|169122992|gb|ACA46828.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 326

 Score = 96.4 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 51/255 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 EGDIVHLNGQILGRH 256
             ++  L     GRH
Sbjct: 211 P-EVRELELLKYGRH 224


>gi|168177461|ref|ZP_02612125.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226947352|ref|YP_002802443.1| hypothetical protein CLM_0172 [Clostridium botulinum A2 str. Kyoto]
 gi|182671002|gb|EDT82976.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226844468|gb|ACO87134.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 326

 Score = 96.4 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 51/255 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 EGDIVHLNGQILGRH 256
             ++  L     GRH
Sbjct: 211 P-EVRELELLKYGRH 224


>gi|153938098|ref|YP_001389492.1| hypothetical protein CLI_0184 [Clostridium botulinum F str.
           Langeland]
 gi|152933994|gb|ABS39492.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|295317593|gb|ADF97970.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 326

 Score = 96.4 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 51/255 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 EGDIVHLNGQILGRH 256
             ++  L     GRH
Sbjct: 211 P-EVRELELLKYGRH 224


>gi|148378135|ref|YP_001252676.1| hypothetical protein CBO0129 [Clostridium botulinum A str. ATCC
           3502]
 gi|153930964|ref|YP_001382536.1| hypothetical protein CLB_0165 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937112|ref|YP_001386088.1| hypothetical protein CLC_0177 [Clostridium botulinum A str. Hall]
 gi|148287619|emb|CAL81684.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927008|gb|ABS32508.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933026|gb|ABS38525.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 326

 Score = 96.4 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 51/255 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 EGDIVHLNGQILGRH 256
             ++  L     GRH
Sbjct: 211 P-EVRELELLKYGRH 224


>gi|322804399|emb|CBZ01949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 326

 Score = 96.4 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 51/255 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +     V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLEMVKSP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 EGDIVHLNGQILGRH 256
             ++  L     GRH
Sbjct: 211 P-EVRELELLKYGRH 224


>gi|309807684|ref|ZP_07701623.1| tRNA-specific 2-thiouridylase MnmA domain protein [Lactobacillus
          iners LactinV 01V1-a]
 gi|308169058|gb|EFO71137.1| tRNA-specific 2-thiouridylase MnmA domain protein [Lactobacillus
          iners LactinV 01V1-a]
          Length = 56

 Score = 96.4 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
          +   +RVVV MSGGVDSSV A LLK  GYDV+GV ++ ++    +   G C A +D
Sbjct: 3  DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATED 55


>gi|110803765|ref|YP_699484.1| argininosuccinate synthase [Clostridium perfringens SM101]
 gi|110684266|gb|ABG87636.1| thiamin biosynthesis protein ThiI [Clostridium perfringens SM101]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMISGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|170760015|ref|YP_001785458.1| hypothetical protein CLK_3304 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407004|gb|ACA55415.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 50/241 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKKFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 E 242
            
Sbjct: 211 P 211


>gi|28210054|ref|NP_780998.1| hypothetical protein CTC00292 [Clostridium tetani E88]
 gi|28202489|gb|AAO34935.1| conserved protein [Clostridium tetani E88]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 49/254 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G DVIGV  + +   + S              A R+ 
Sbjct: 2   TRALAMISGGLDSILAAKLMKDQGIDVIGVCFKSHFFNEES--------------AIRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139
             I++   + D+ E+    V  P    Y  G+   PC+DC+   + +S  L   + L AD
Sbjct: 48  KQIDIPLKIVDFSEKHLEIVKNP---KYGYGKNMNPCIDCHSLMMNYSGKL--LKDLEAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TG  +  R    +           +++ ++ S +      + LC    P  +M+ + 
Sbjct: 103 FIITGEVLNQRPMSQN--------KSSLEIVKNHSGY-ADKILRPLCAKNLPPTEMELKG 153

Query: 200 VR-----------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +                  +LA + G  I +       C + +  Y + ++ +       
Sbjct: 154 IVDREKLLDISGRSRKLQMELAEKWG--IKEYPSPAGGCKLTEPNYSNRLRDLLKYNNEP 211

Query: 243 GDIVHLNGQILGRH 256
            D   L    +GRH
Sbjct: 212 ED-RELEMLRIGRH 224


>gi|168215839|ref|ZP_02641464.1| thiamin biosynthesis protein ThiI [Clostridium perfringens NCTC
           8239]
 gi|182381995|gb|EDT79474.1| thiamin biosynthesis protein ThiI [Clostridium perfringens NCTC
           8239]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|168210139|ref|ZP_02635764.1| thiamin biosynthesis protein ThiI [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711808|gb|EDT23990.1| thiamin biosynthesis protein ThiI [Clostridium perfringens B str.
           ATCC 3626]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|168205553|ref|ZP_02631558.1| thiamin biosynthesis protein ThiI [Clostridium perfringens E str.
           JGS1987]
 gi|170662909|gb|EDT15592.1| thiamin biosynthesis protein ThiI [Clostridium perfringens E str.
           JGS1987]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|168213686|ref|ZP_02639311.1| thiamin biosynthesis protein ThiI [Clostridium perfringens CPE str.
           F4969]
 gi|169344240|ref|ZP_02865222.1| thiamin biosynthesis protein ThiI [Clostridium perfringens C str.
           JGS1495]
 gi|182626249|ref|ZP_02954006.1| thiamin biosynthesis protein ThiI [Clostridium perfringens D str.
           JGS1721]
 gi|169297699|gb|EDS79799.1| thiamin biosynthesis protein ThiI [Clostridium perfringens C str.
           JGS1495]
 gi|170714850|gb|EDT27032.1| thiamin biosynthesis protein ThiI [Clostridium perfringens CPE str.
           F4969]
 gi|177908428|gb|EDT70966.1| thiamin biosynthesis protein ThiI [Clostridium perfringens D str.
           JGS1721]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|110799347|ref|YP_696888.1| thiamin biosynthesis protein ThiI [Clostridium perfringens ATCC
           13124]
 gi|110673994|gb|ABG82981.1| thiamin biosynthesis protein ThiI [Clostridium perfringens ATCC
           13124]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|18311192|ref|NP_563126.1| hypothetical protein CPE2210 [Clostridium perfringens str. 13]
 gi|18145875|dbj|BAB81916.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 326

 Score = 95.6 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+C
Sbjct: 2   TRALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEEN--------------AKRMC 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ E     V  P    +  G+   PC+DC+   +++S    + ++  AD
Sbjct: 48  KQIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSG--ELLKKFDAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|255525844|ref|ZP_05392773.1| thiamine biosynthesis protein [Clostridium carboxidivorans P7]
 gi|255510487|gb|EET86798.1| thiamine biosynthesis protein [Clostridium carboxidivorans P7]
          Length = 327

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 55/257 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  MSGG+DS++ A L+K  G +VIG+  + +     +              A R+ 
Sbjct: 2   TKALAMMSGGLDSTLAAKLMKDQGIEVIGICFKSHFFGADN--------------AIRMA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGA 138
             IN+   V D+ E     V  P    +  G+   PC+DC+   + +   +L    +  A
Sbjct: 48  KQINMPLEVVDFSEEHFEMVKNP---KHGYGKNMNPCIDCHAMMMNYSGKMLE---KYEA 101

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL------ 192
           D + TG  +  R    +           +D+ + +S F     +        P       
Sbjct: 102 DFIITGEVLNQRPMSQN--------KSSLDVVKKESGFSDKILRPLCAKNLAPTKMELEG 153

Query: 193 -----------GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                      G  +K  +  LA + G  I D       C + +  Y    KR+   +  
Sbjct: 154 LVDREKLMDISGRSRKVQM-ALAEKWG--IKDYPSPAGGCKLTEPNYA---KRLRDLLDK 207

Query: 242 EGDIVHLNGQIL--GRH 256
           + DI+  +  +L  GRH
Sbjct: 208 KEDIIASDLGVLKYGRH 224


>gi|168182262|ref|ZP_02616926.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237793447|ref|YP_002860999.1| hypothetical protein CLJ_B0167 [Clostridium botulinum Ba4 str. 657]
 gi|182674625|gb|EDT86586.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229262133|gb|ACQ53166.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 326

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 50/241 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 2   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGAD 139
             I++   V D+ +   + V  P    +  G+   PC+DC+   +K+S    + ++  AD
Sbjct: 48  KQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSG--ELLKRFNAD 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--- 196
            + TG  +  R    +           +++ + +S +     +  LC    P  +M+   
Sbjct: 103 FIITGEVLNQRPMSQN--------KAALNVVKKESGYEEKILRP-LCAKILPPTEMELQN 153

Query: 197 ---------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                          K  + +LA + G  I +       C + +  Y   +K +      
Sbjct: 154 LVDREKLLNISGRSRKVQM-ELAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKET 210

Query: 242 E 242
            
Sbjct: 211 P 211


>gi|255017313|ref|ZP_05289439.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           F2-515]
          Length = 66

 Score = 94.5 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 329 KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387
           K R  Q    V V   +DG   V F      +  GQA VFY  D      LGGG I    
Sbjct: 1   KFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFYDGDV----CLGGGTIDTVW 56

Query: 388 RSDAVEESL 396
           ++    + +
Sbjct: 57  KNGQKLDYV 65


>gi|313113466|ref|ZP_07799055.1| hypothetical protein HMPREF9436_00903 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624193|gb|EFQ07559.1| hypothetical protein HMPREF9436_00903 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 176

 Score = 93.7 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 30/201 (14%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T L     D      +V+V M G  + +V   +L++ G+ V G  ++L   + A      
Sbjct: 4   TFLPGSGFDTYESQDKVLVQMDGSRECAVAVRILQQQGFAVAGAAVRLAAEQTADAENAK 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             A             + +   V + E           A     G TPL          F
Sbjct: 64  KAAEA-----------LGIECIVLNAEAL-----AGQDADVLGEGGTPL----------F 97

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           + LL+   +LG   +AT H  R+R+  G DG     +C P     D S  L A  Q+ L 
Sbjct: 98  AALLTAADKLGMQYVATTH--RARVETGADG--VHTVCPPAGTGSDDSTILAALPQETLA 153

Query: 187 DLRFPLGDMKKESVRDLAREM 207
            L  PLGD   E V ++A + 
Sbjct: 154 RLILPLGDFAPEDVAEMAEDF 174


>gi|254490475|ref|ZP_05103661.1| tRNA methyl transferase [Methylophaga thiooxidans DMS010]
 gi|224464219|gb|EEF80482.1| tRNA methyl transferase [Methylophaga thiooxydans DMS010]
          Length = 350

 Score = 93.3 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 95/256 (37%), Gaps = 27/256 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-----V 73
           +  + V  +SGG+DS +   +L+  G +V G+    + +    +         D      
Sbjct: 3   RQHKAVALISGGLDSMLAVRVLQEQGIEVEGI---NFYTGFCVEGHTHAIRNHDKDKQKR 59

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +A  V + +++  ++ D  E +++ ++ P    +  G    PC+DC   +     +   
Sbjct: 60  NNALWVAEQLDIKLHIVDVIEEYKDVLLNP---KHGYGANMNPCLDCKIFM-VGKAVEWV 115

Query: 134 RQL---GADVLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLERDQSYFLFATT 181
           ++    G D + TG  I  R             ++     ++ RP+  +           
Sbjct: 116 KEHHQDGFDFIVTGEVIGQRPMSQRKKTMPIISEESGADDLLLRPLCAKNLPETLPEREG 175

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIA 240
                 L    G  +K  +  LA+  GL     + +   CF+    Y D +  +  A  +
Sbjct: 176 WVDREKLYDFSGRNRKPQI-ALAKSFGL-NDFATPAGGCCFLTDKNYSDKLVDLWKARNS 233

Query: 241 LEGDIVHLNGQILGRH 256
            E ++  +    +GRH
Sbjct: 234 REYEMDDIMLLKVGRH 249


>gi|241668630|ref|ZP_04756208.1| hypothetical protein FphipA2_07676 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877163|ref|ZP_05249873.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843184|gb|EET21598.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 348

 Score = 93.3 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 24/254 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K ++ V  +SGG+DS +   ++   G  V G+    + +    +        QD    +
Sbjct: 3   KKQVKAVSLISGGLDSMLATKMMLEQGIHVEGI---NFFTGFCVEGHTHAIRKQDKEKQK 59

Query: 78  R-----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           R     V + + +  ++ D  E +++ ++ P    Y  G    PC+DC   +        
Sbjct: 60  RNNSLWVAEQLGIKLHIIDVIEEYKDVLLNP---KYGYGANMNPCLDCKIFM-VRKAKEW 115

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQ 183
            ++ G D + TG  I  R           +         + RP+  +             
Sbjct: 116 AKENGFDFIITGEVIGQRPMSQRKSTMPVVQKQSGVDDLLLRPLSAKNLPETKPEREGWV 175

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALE 242
               L    G  +K+ +R +ARE G++      +   CF+   +Y D +  +  A  + E
Sbjct: 176 DRSKLMGITGRGRKDQMR-MAREWGIEDYASP-AGGCCFLTDKQYSDKLVDLWQARNSKE 233

Query: 243 GDIVHLNGQILGRH 256
            +   +    +GRH
Sbjct: 234 YEFDDIMLLKVGRH 247


>gi|167628090|ref|YP_001678590.1| hypothetical protein Fphi_1863 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598091|gb|ABZ88089.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 421

 Score = 92.5 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 93/254 (36%), Gaps = 24/254 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K ++ V  +SGG+DS +   ++   G  V G+    + +    +        QD    +
Sbjct: 3   KKQVKAVSLISGGLDSMLATKMMLEQGIHVEGI---NFFTGFCVEGHTHAIRKQDKEKQK 59

Query: 78  R-----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           R     V + + +  ++ D  E +++ ++ P    Y  G    PC+DC   +        
Sbjct: 60  RNNSLWVAEQLGIKLHIIDVIEEYKDVLLNP---KYGYGANMNPCLDCKIFM-VRKAKEW 115

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQ 183
             + G D + TG  I  R           +         + RP+  +             
Sbjct: 116 AEENGFDFIITGEVIGQRPMSQRKSTMPVVQKQSGVDDLLLRPLSAKNLPETKPEREGWV 175

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALE 242
               L    G  +K+ +R +ARE G++      +   CF+   +Y D +  +  A  + E
Sbjct: 176 DRSKLMGITGRGRKDQMR-MAREWGIEDYASP-AGGCCFLTDKQYSDKLVDLWQARNSKE 233

Query: 243 GDIVHLNGQILGRH 256
            +   +    +GRH
Sbjct: 234 YEFDDIMLLKVGRH 247


>gi|187777280|ref|ZP_02993753.1| hypothetical protein CLOSPO_00832 [Clostridium sporogenes ATCC
           15579]
 gi|187774208|gb|EDU38010.1| hypothetical protein CLOSPO_00832 [Clostridium sporogenes ATCC
           15579]
          Length = 333

 Score = 92.1 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 52/242 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGG+DS++ A L+K  G +VIG+  + Y   +               +A R+ 
Sbjct: 9   TRALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNE--------------KNAERMT 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGA 138
             I++   V D+ ++    V  P    +  G+   PC+DC+   +K+  +LL    +  A
Sbjct: 55  KQIDIPLEVVDFSKKHLEMVKNP---KHGYGKNMNPCIDCHSMMMKYSGELLE---KFNA 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-- 196
           D + TG  +  R    +           +++ + +S +      + LC    P  +M+  
Sbjct: 109 DFIITGEVLNQRPMSQN--------KAALNVVKKESGY-EQKILRPLCAKILPPTEMELQ 159

Query: 197 ----------------KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
                           K  + DLA + G  I +       C + +  Y   +K +     
Sbjct: 160 NLVDREKLLDISGRSRKVQM-DLAEKWG--IKEYPSPAGGCKLTEPNYAKRLKDLLKHKE 216

Query: 241 LE 242
             
Sbjct: 217 TP 218


>gi|304310384|ref|YP_003809982.1| predicted thiamine biosynthesis protein [gamma proteobacterium
           HdN1]
 gi|301796117|emb|CBL44322.1| predicted thiamine biosynthesis protein [gamma proteobacterium
           HdN1]
          Length = 354

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 93/255 (36%), Gaps = 23/255 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDAR 77
             + +  +SGG+DS +    ++  G  V GV               +      Q   +A 
Sbjct: 4   QRKAIALVSGGLDSMLAVRAMQEQGIHVEGVNFFTGFCVEGHTHAIRKQDQEKQKRNNAL 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQ 135
            V + + +  ++ D  E +++ V+ P    Y  G    PC+DC   +  K + +L+  R+
Sbjct: 64  WVAERLGIKLHIEDISEEYKDVVLNP---RYGYGAHMNPCLDCKIFMVGKANAMLNRARE 120

Query: 136 L----GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           L    G D + TG  I  R           +  +      + RP+  +   +        
Sbjct: 121 LVADGGFDFIITGEVIGQRPKSQRKDTMPLIARESGAEDRIVRPLCGKNLPATLPEREGW 180

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-L 241
            Q   +    G  +K  +  LA + GLD   +  +   CF+    Y   +  +       
Sbjct: 181 IQRELMYDFSGRNRKPQI-ALAEKWGLDDYAQP-AGGCCFLTDESYSRKLGDLWQARGHR 238

Query: 242 EGDIVHLNGQILGRH 256
           E ++  +    +GRH
Sbjct: 239 EYELDDIMLLKVGRH 253


>gi|110669532|ref|YP_659343.1| tRNA methyl transferase [Haloquadratum walsbyi DSM 16790]
 gi|109627279|emb|CAJ53769.1| tRNA methyl transferase [Haloquadratum walsbyi DSM 16790]
          Length = 371

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 44/195 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+VVA L     YD +G      ++  A   K       ++ DA +V   
Sbjct: 82  VLVAFSGGVDSAVVATLA----YDALG------SNAIACTAKSETLPAAELEDAHQVAAE 131

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H +  + E      +   +       T          ++   +     + G + + 
Sbjct: 132 IGLPHKIVSFSELNDENFVENGSDRCYHCRT----------MRLGRMYDAAHEHGIETVC 181

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G           DG  R  +   +D     S                PL    + KE V
Sbjct: 182 DGTNA-----SDADGGHRPGL-DAVDELNITS----------------PLREHGLDKEDV 219

Query: 201 RDLAREMGLDIADKS 215
           R +A   GL +A+K 
Sbjct: 220 RIVAAAYGLSVAEKP 234


>gi|188589825|ref|YP_001919873.1| argininosuccinate synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500106|gb|ACD53242.1| argininosuccinate synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 330

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+ +
Sbjct: 3   KALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEEN--------------AKRMTE 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGAD 139
            I +   V D+ E   + V  P    +  G+   PC+DC+   + +   LL    +  AD
Sbjct: 49  QIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKLLE---KFNAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|187935593|ref|YP_001884686.1| argininosuccinate synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187723746|gb|ACD24967.1| argininosuccinate synthase [Clostridium botulinum B str. Eklund
           17B]
          Length = 330

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+ +
Sbjct: 3   KALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEEN--------------AKRMTE 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGAD 139
            I +   V D+ E   + V  P    +  G+   PC+DC+   + +   LL    +  AD
Sbjct: 49  QIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKLLE---KFNAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|15606230|ref|NP_213608.1| hypothetical protein aq_898 [Aquifex aeolicus VF5]
 gi|2983434|gb|AAC07016.1| putative protein [Aquifex aeolicus VF5]
          Length = 251

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 81/247 (32%), Gaps = 40/247 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ---DVYDA 76
             + +  +SGG+DSS+   L++  G +V              KR+           V  A
Sbjct: 3   KRKALALLSGGLDSSLAVKLVQEQGIEVKAFHFYTGFCITEFKRRLGQTKEDGSPYVNPA 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +    + V   + D  E + + VI P    Y  G+   PCVDC R +       +  + 
Sbjct: 63  IKAAAQLGVPIEIVDISEEYYDVVINP---KYGYGKNVNPCVDC-RIMMLKKAKEIMEKE 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL---- 192
           G D + TG  +  R       + + I              L     + L     P     
Sbjct: 119 GYDFIVTGEVLYQRPMSQTPERLKLIEKEAG---------LEGLILRPLSAKVLPPTIPE 169

Query: 193 --------------GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
                         G  +K  + +LA++ GLD      +   C++    Y     R    
Sbjct: 170 KEGWVDRNKLLGIKGRSRKVQI-ELAKKYGLDYEQP--AGGCCYLTDETYA---ARFKEA 223

Query: 239 IALEGDI 245
            A EG I
Sbjct: 224 YATEGII 230


>gi|327401200|ref|YP_004342039.1| hypothetical protein Arcve_1319 [Archaeoglobus veneficus SNP6]
 gi|327316708|gb|AEA47324.1| Conserved hypothetical protein CHP00268 [Archaeoglobus veneficus
           SNP6]
          Length = 257

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 51/214 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV +A SGGVDS+ +AAL ++ G + I VT++               A +D+ +A+RV +
Sbjct: 15  RVAIAFSGGVDSATLAALCRKWGIEAIAVTVK-----------TDLMAARDLENAKRVAE 63

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + +      +AV+           TP  C  C +T+    +  V    G  V+
Sbjct: 64  EIGIEHVIVEVAVP--DAVLE---------NTPQRCYYCKKTI-IKAIKDVAESRGFRVI 111

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--LGDMKKES 199
                         DG          D  +D   F       +   +  P  +    K+ 
Sbjct: 112 --------------DGTN-------ADDLKD---FRPGLKALEEEGVISPWAMAGFTKKE 147

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           +R +A+ +GL + ++  +   C   +  + + ++
Sbjct: 148 IRRVAKSLGLSVHNRPSN--SCLATRIPFGERIE 179


>gi|292490681|ref|YP_003526120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
 gi|291579276|gb|ADE13733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus halophilus Nc4]
          Length = 347

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 94/253 (37%), Gaps = 24/253 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + V  +SGG+DS + A +++  G  V G+    + +    +        +D   A+R
Sbjct: 3   KQRKAVALISGGLDSMLAAKVMQEQGIHVEGI---NFFTGFCVEGHTHAIRNKDKKRAKR 59

Query: 79  -----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + + +  ++ +  + +++ V+ P    Y  G    PC+DC   +    L +  
Sbjct: 60  NNALWAAEQLGIKLHMVEVIDEYKDVVLNP---KYGYGAHLNPCLDCKCFMVTKAL-AWM 115

Query: 134 RQLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           ++ G D + TG  +  R           V  +     ++ RP+  +              
Sbjct: 116 KENGFDFIVTGEVVGQRPKSQRADTMPVVARESGAHDLLLRPLCAKNLPPTLPEREGWVD 175

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEG 243
              L    G  +K  +  L    G++   +  +   CF+    Y   +  +  A  A + 
Sbjct: 176 RDKLYDFSGRSRKPQM-ALVARFGIEDYAQP-AGGCCFLTDANYSAKLADLWQARSARDY 233

Query: 244 DIVHLNGQILGRH 256
           D+  +    +GRH
Sbjct: 234 DLDDIMLLKVGRH 246


>gi|330881194|gb|EGH15343.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 58

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 334 QDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393
           Q   P  +++  DG    F+  +  V  GQ+ VFY  +      LGGG+I  ++   + +
Sbjct: 1   QGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI----CLGGGVIEIAEPWTSKD 56

Query: 394 E 394
           +
Sbjct: 57  K 57


>gi|331270460|ref|YP_004396952.1| hypothetical protein CbC4_2290 [Clostridium botulinum BKT015925]
 gi|329127010|gb|AEB76955.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 327

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 22/137 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS + A L+K  G +VIG+  + Y     +              A+R+ 
Sbjct: 2   TKALALISGGLDSILAAKLIKDQGIEVIGICFKSYFFGPDN--------------AKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGA 138
             I++   V D+ +   +    P    +  G+   PC+DC+   +++  +LL    +  A
Sbjct: 48  KQIDIPLEVVDFSKEHFDMTKDP---KHGHGKNMNPCIDCHAMMMRYAGELLE---KFNA 101

Query: 139 DVLATGHYIRSRLYVGD 155
           D + TG  +  R    +
Sbjct: 102 DFIITGEVLNQRPMSQN 118


>gi|251779527|ref|ZP_04822447.1| argininosuccinate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083842|gb|EES49732.1| argininosuccinate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 330

 Score = 87.9 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 22/136 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS + A L+K  G +VIG+  + Y   + +              A+R+  
Sbjct: 3   KALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEEN--------------AKRMTQ 48

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGAD 139
            I +   V D+ E   + V  P    +  G+   PC+DC+   + +   LL    +  AD
Sbjct: 49  QIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKLLE---KFNAD 102

Query: 140 VLATGHYIRSRLYVGD 155
            + TG  +  R    +
Sbjct: 103 FIITGEVLNQRPMSQN 118


>gi|253680929|ref|ZP_04861732.1| argininosuccinate synthase [Clostridium botulinum D str. 1873]
 gi|253562778|gb|EES92224.1| argininosuccinate synthase [Clostridium botulinum D str. 1873]
          Length = 327

 Score = 87.5 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 22/137 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS + A L+K  G +VIG+  + Y     +              A+R+ 
Sbjct: 2   TKALALISGGLDSILAAKLIKDQGIEVIGICFKSYFFGPEN--------------AKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGA 138
             I++   V D+ +   +    P    +  G+   PC+DC+   +++  +LL    +  A
Sbjct: 48  KQIDIPLEVIDFSKEHFDMTKDP---KHGHGKNMNPCIDCHAMMMRYAGELLE---KFNA 101

Query: 139 DVLATGHYIRSRLYVGD 155
           D + TG  +  R    +
Sbjct: 102 DFIITGEVLNQRPMSQN 118


>gi|289191725|ref|YP_003457666.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938175|gb|ADC68930.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22]
          Length = 253

 Score = 87.5 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 44/203 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSSV A L  +  G D V+G+ +                  +D+  A+ V 
Sbjct: 24  VVVGLSGGIDSSVTAYLCVKALGKDKVLGLIM-----------PEKHTNPRDIEHAKMVA 72

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + + + D         I     ++ AG                           D 
Sbjct: 73  ENLGIKYIISD---------ITDILKAFGAGG-------------------YVPTKEFDK 104

Query: 141 LATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +A G+   R R+ +      +  +       + + Y  + T    +     P+G++ K  
Sbjct: 105 MADGNLKARIRMCLLYYFANKYNLLVAGTSNKSEIYVGYGTKHGDIACDIRPIGNLFKTE 164

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           VR+LA+ +G+   I +K  S  +
Sbjct: 165 VRELAKYLGVPKEIIEKPPSAGL 187


>gi|118445022|ref|YP_879024.1| hypothetical protein NT01CX_0558 [Clostridium novyi NT]
 gi|118135478|gb|ABK62522.1| conserved protein [Clostridium novyi NT]
          Length = 327

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 22/137 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS + A L+K  G +VIG+  + Y     +              A+R+ 
Sbjct: 2   TKALALISGGLDSILAAKLIKDQGIEVIGICFKSYFFGPEN--------------AKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGA 138
             I++   V D+ +   +    P    +  G+   PC+DC+   +++  +LL    +  A
Sbjct: 48  KQIDIPLEVVDFSKEHFDMTKSP---KHGHGKNMNPCIDCHAMMMRYAGELLE---KFNA 101

Query: 139 DVLATGHYIRSRLYVGD 155
           D + TG  +  R    +
Sbjct: 102 DFIITGEVLNQRPMSQN 118


>gi|295101526|emb|CBK99071.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 172

 Score = 86.8 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 34/197 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
             D   +  RV++ +SG V S V   +L++ G+ V    ++L ++ +      +  A   
Sbjct: 10  GFDTYEEQDRVLMGLSGSVRSGVAVRILQQQGFAVAAAVVRLADTPEEHAAVDAAKALAK 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D    C T+N                     +   AG+            +F+ LL+ 
Sbjct: 70  KLDVE--CVTLN---------------------AEALAGQDAEAA-------RFAALLTA 99

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +LG   +A+G Y R    +  D +    +  P     D+S  L A + + L  L  PL
Sbjct: 100 ADKLGIQYIASGRYAR----IETDAQGMSHLFAPESGAPDESGTLAALSPEVLSRLILPL 155

Query: 193 GDMKKESVRDLAREMGL 209
           GD   E V ++A +  L
Sbjct: 156 GDFAPEDVAEMAEDFKL 172


>gi|117926424|ref|YP_867041.1| hypothetical protein Mmc1_3145 [Magnetococcus sp. MC-1]
 gi|117610180|gb|ABK45635.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 346

 Score = 86.8 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 21/223 (9%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDVYDARRVCD 81
            +SGG+DS +   LL     +V  V    Y         G+           +DA     
Sbjct: 9   LLSGGLDSMLATKLLMEQDIEVHCV--NFYTGFCVQSHTGAIRAKAGDPPPKHDALHAAQ 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  ++ D  E +   V  P    Y  G+   PC+DC   +      ++  QLG D L
Sbjct: 67  ILGIKLHIVDISEEYVEIVTNP---KYGYGKNLNPCMDCKIFM-IKKAWALKEQLGFDFL 122

Query: 142 ATGHYIRSRLYVG---------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            TG  +  R              +      + RP+  +R                L    
Sbjct: 123 FTGEVVGQRPMSQRKDTMPVVPREAGVEGWLVRPLSAKRLPETQPELLGMVDRQRLLDFH 182

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
           G  +K  +  LA++ GL     + +   CF+    Y   ++ +
Sbjct: 183 GRTRKPQM-ALAKQYGL-TDYPAPAGGCCFLTDENYSKRLQDL 223


>gi|168185903|ref|ZP_02620538.1| thiamin biosynthesis protein ThiI [Clostridium botulinum C str.
           Eklund]
 gi|169296022|gb|EDS78155.1| thiamin biosynthesis protein ThiI [Clostridium botulinum C str.
           Eklund]
          Length = 327

 Score = 86.4 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 82/203 (40%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS + A L+K  G +VIG+  + Y     +              A+R+ 
Sbjct: 2   TKALALISGGLDSILAAKLIKDQGIEVIGICFKSYFFGPEN--------------AKRMT 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKF-SDLLSVTRQLGA 138
             I++   V D+     +    P    +  G+   PC+DC+   +++  +LL    +  A
Sbjct: 48  KQIDIPLEVVDFSREHFDMTKSP---KHGHGKNMNPCIDCHAMMMRYAGELLE---KFNA 101

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TG  +  R    +           +++ + +S F      + LC    P  +M+  
Sbjct: 102 DFIITGEVLNQRPMSQN--------KSSLNVVKKESGF-ADKILRPLCAKVLPPTEMELN 152

Query: 199 SVRDLAREMGLDIADKSDSQDIC 221
            + D  + +G+    +    ++ 
Sbjct: 153 GIVDREKLLGITGRGRKVQMELA 175


>gi|256823496|ref|YP_003147459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
 gi|256797035|gb|ACV27691.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
          Length = 362

 Score = 86.4 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 97/269 (36%), Gaps = 28/269 (10%)

Query: 7   TRLNSLD--LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASK 62
           T+ NS         K  + V  +SGG+DS + A +++  G  V G+              
Sbjct: 2   TQANSAQNSTTAPQKQRKAVALISGGLDSLLAAKVIQEQGIHVEGINFYTGFCVEGHTHA 61

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            +      Q   ++  V + + +  ++ D  E +++ V+ P    +  G    PC+DC  
Sbjct: 62  IRKKDKDKQKRNNSLWVAEQLGIKLHIIDISEEYKDIVLNP---KHGYGANLNPCLDCKI 118

Query: 123 T-VKFSDLLSVTRQLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERD 172
             V  +   +   + G D + TG  I  R           +  +      + RP+   ++
Sbjct: 119 FMVNQAQAWAWAEENGFDFIITGEVIGQRPKSQRKETMPIIARESGADDRLLRPLC-AKN 177

Query: 173 QSYFL----FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228
               L        ++QL       G  +K    +LA++ G +   +  +   CF+    Y
Sbjct: 178 LMPTLPEREGWVDREQLYGFS---GRSRKPQ-FELAKQFGFEDFAQP-AGGCCFLTDANY 232

Query: 229 FDVVKRINAGIA-LEGDIVHLNGQILGRH 256
              +  +         ++  +    +GRH
Sbjct: 233 SAKLADLWEARGERRYELDDIMLLKVGRH 261


>gi|154174151|ref|YP_001409218.1| thiamine biosynthesis protein:ExsB [Campylobacter curvus 525.92]
 gi|112803489|gb|EAU00833.1| thiamine biosynthesis protein:ExsB [Campylobacter curvus 525.92]
          Length = 329

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 29/247 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++   G +V+ + +            G            R  
Sbjct: 1   MKALALFSGGLDSMLAMKIISDQGIEVVALYM----------DTGFGVDEDKHAVLERRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +       V D    +   V+  F+  Y  G+   PC+DC+  + F   L++ +  GAD 
Sbjct: 51  NLAGAKFKVVDMRNEYLRDVL--FSPKYGYGKQFNPCIDCHGYM-FKTALNMLKSEGADF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY------FLFATTQQQL-----CDLR 189
           + TG  +  R       +    + R  D E D          L  T  ++        L 
Sbjct: 108 IITGEVLGQRPMSQRR-EALFQVKRLADDENDLVLRPMCAKLLAPTKPEREGWVDREKLM 166

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
              G  +K  +  +A E G +  D +     C +    +   +K      A   DI  + 
Sbjct: 167 AISGRDRKPQL-KMAAEFGFE--DYATPGGGCLLTIDSFAVKIKDYLKFDAQMRDI-DVT 222

Query: 250 GQILGRH 256
              LGRH
Sbjct: 223 WLKLGRH 229


>gi|110835125|ref|YP_693984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
 gi|110648236|emb|CAL17712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax borkumensis SK2]
          Length = 361

 Score = 85.2 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 29/260 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYD 75
           P   R +  +SGG+DS +   +++  G +V GV               +      +   +
Sbjct: 7   PIKRRAIALVSGGLDSMLAVKVMQDQGIEVEGVNFYTGFCVEGHTHAIRKKDKDKEKRNN 66

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVT 133
           A  V + + +  ++ D  E +++ V+ P    +  G    PC+DC   +  + + +++  
Sbjct: 67  ALWVAEQLGIKMHIIDISEEYKDVVLNP---KHGYGANLNPCLDCKIFMVNQATLMINKA 123

Query: 134 RQL----GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFL--- 177
           R+L    G D + TG  I  R           +  +      + RP+  +          
Sbjct: 124 RELAGDRGFDFIVTGEVIGQRPKSQRKETMPIISQESGADDRLLRPLCAKNLPPTLPERE 183

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-N 236
               ++QL D     G  +K  +  LA + GLD   +  +   CF+    Y + +  +  
Sbjct: 184 GWVNREQLHDFS---GRNRKPQM-ALAAKFGLDDFAQP-AGGCCFLTDESYSNKLADLWK 238

Query: 237 AGIALEGDIVHLNGQILGRH 256
           A      ++  +    +GRH
Sbjct: 239 ARNERRYELDDIMLLKVGRH 258


>gi|289548750|ref|YP_003473738.1| tRNA methyl transferase-like protein [Thermocrinis albus DSM 14484]
 gi|289182367|gb|ADC89611.1| tRNA methyl transferase-like protein [Thermocrinis albus DSM 14484]
          Length = 346

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 123/357 (34%), Gaps = 48/357 (13%)

Query: 21  MRV--VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ---DVYD 75
           M+V  V  +SGG+DSS+   LL+  G ++  +           KR+           V  
Sbjct: 1   MKVRAVALLSGGLDSSLAVRLLQDQGVEIKALHFYTGFCITEHKRRLGLRREDGQQYVNP 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A R    + V   + D  + + + ++ P    Y  G+   PCVDC R +       +  +
Sbjct: 61  ALRAAAQLGVPIEIVDISKEYIHVLLNP---KYGYGKNVNPCVDC-RIMMLRKAKEIMEK 116

Query: 136 LGADVLATGHYIRSRLY---------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            G   + TG  +  R           + ++   + ++ RP+  +                
Sbjct: 117 EGYQFVVTGEVLGQRPMSQTYQRLMLIEEEADLKGLVLRPLSAKLLPPTIPEKLGWVDRE 176

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            L    G  +K  + +LA+  GL+      +   C++    Y     R    +++EG I 
Sbjct: 177 RLLGIRGRGRKVQI-ELAKRYGLEYQQP--AGGCCYLTDETYAF---RFKEALSVEGKIT 230

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306
             +         ++ +++G  R L +  G  + V   +   + +     +       Y R
Sbjct: 231 EDD---------LVLFSVG--RHLRLPSGVKVIVARHEGEVNFL-----QGFRSRYSYAR 274

Query: 307 EINWLGDGLF--EDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359
            ++  G       D   +  +    I  R S+      +    DG  V       GV
Sbjct: 275 RLDGKGTFALIKGDPSEEDLQLIANIVARYSKREEAEVLIHLSDGREVVL----RGV 327


>gi|223041195|ref|ZP_03611447.1| tRNA methyl transferase [Campylobacter rectus RM3267]
 gi|222877554|gb|EEF12683.1| tRNA methyl transferase [Campylobacter rectus RM3267]
          Length = 328

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 119/360 (33%), Gaps = 60/360 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V  SGG+DS +   LL   G DV  + + +  S    K +            RR  
Sbjct: 1   MKALVLFSGGLDSMIAIRLLTAQGIDVTAIHIDIGFSGDEKKAEIL----------RRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +       + +    +   V+  F   +  G+   PC+DC+  + F   L++ R  GA  
Sbjct: 51  NEAGAELKIINIRNEYLRDVL--FTPKHGYGKHFNPCIDCHGYM-FKTALAMMRSEGASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL--------------C 186
           +ATG  I  R        RR  M R  +   D+   +      QL               
Sbjct: 108 IATGEVIGQRPMSQ----RRDAMARVKNAAGDEDDLILRPMSAQLMKPTKPEREGWVDRS 163

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            L    G  +K  +  LA+E G    +       C +          +I   I  + D+ 
Sbjct: 164 KLLAISGRDRKRQL-ALAKEFGFSEYETPG--GGCLLT---IESFANKIKDFIKFDPDMT 217

Query: 247 HLNGQ--ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---- 300
           + + Q   +GRH          R   G  M     V+  D+N +  ++            
Sbjct: 218 NADMQLLRIGRH---------LRLTNGTKM-----VIGRDENDNAKLLALNNPKFTQIKF 263

Query: 301 HRIYLREINWLGDGLFEDAVVDGFKC-FVKIRSSQDPVPVFVQRNDDGVYVD-FEKSEVG 358
               +  ++++     E  +    +      R+      V V+     + V  FE  +  
Sbjct: 264 DGDIVGAVSFVDAKFNEADLEFAVRLALAYTRA-DKDTAVRVRIGGREICVKPFESKQAA 322


>gi|296109747|ref|YP_003616696.1| NAD+ synthetase [Methanocaldococcus infernus ME]
 gi|295434561|gb|ADG13732.1| NAD+ synthetase [Methanocaldococcus infernus ME]
          Length = 247

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 46/203 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSS  A L  +  G D V+G+ L                  +D+ DA++V 
Sbjct: 21  VVVGLSGGIDSSTTAFLCVKALGKDKVLGLIL-----------PEKTTRKEDIEDAKKVA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + + + +Y+ D  +     V+  F   +       +P  +    V+   L          
Sbjct: 70  EMLGIKYYIIDITD-----VLKAFGLYTPTKEFEKIPDGNLKARVRMCVLYYYA------ 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                               +          + + Y  + T    L     P+  + K  
Sbjct: 119 -------------------NKYNYLVAGTANKSEIYVGYGTKYGDLACDFMPIAHLFKTE 159

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           VR+LA+++G+   I +K  S  +
Sbjct: 160 VRELAKKLGVPKEIIEKPPSAGL 182


>gi|261403192|ref|YP_003247416.1| NAD+ synthetase [Methanocaldococcus vulcanius M7]
 gi|261370185|gb|ACX72934.1| NAD+ synthetase [Methanocaldococcus vulcanius M7]
          Length = 251

 Score = 84.8 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 44/203 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSS+ A L  +  G D V+G+ +                  +D+  A  V 
Sbjct: 24  VVIGLSGGIDSSLTAYLCVKALGKDRVLGIIM-----------PEKYSNRKDIEHAIMVA 72

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ + + + D         I     ++ AG                           D 
Sbjct: 73  KSLGIKYIISD---------ITDILKAFGAGG-------------------YVPTREFDK 104

Query: 141 LATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +A G+   R R+ +      +  +       + ++Y  + T    +     P+G++ K  
Sbjct: 105 IADGNLKARIRMCILYYFANKYNLLVAGTANKSETYVGYGTKHGDIACDIKPIGNLFKTE 164

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           VR++A+ +G+   I +K  S  +
Sbjct: 165 VREMAKYLGIPKEIIEKPPSAGL 187


>gi|15669543|ref|NP_248355.1| NH(3)-dependent NAD+ synthetase NadE [Methanocaldococcus jannaschii
           DSM 2661]
 gi|6093468|sp|Q58747|NADE_METJA RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|1591995|gb|AAB99363.1| NH(3)-dependent NAD+ synthetase (nadE) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 259

 Score = 84.4 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 44/203 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSSV A L  +  G D V+G+ +                  +DV  A+ V 
Sbjct: 30  VVVGLSGGIDSSVTAYLCVKALGKDKVLGLIM-----------PEKNTNPKDVEHAKMVA 78

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + + + D         I     ++ AG                           D 
Sbjct: 79  ENLGIKYIISD---------ITDILKAFGAGG-------------------YVPTREFDK 110

Query: 141 LATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +A G+   R R+ +      +  +       + + Y  + T    +     P+G++ K  
Sbjct: 111 IADGNLKARIRMCILYYFANKYNLLVAGTSNKSEIYVGYGTKHGDIACDIRPIGNLFKTE 170

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           V+ LA+ +G+   I +K  S  +
Sbjct: 171 VKKLAKYIGVPKEIIEKPPSAGL 193


>gi|253730864|ref|ZP_04865029.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725399|gb|EES94128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 70

 Score = 84.4 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K  VR +A ++GL  A K 
Sbjct: 6   DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKK 65


>gi|121998009|ref|YP_001002796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
 gi|121589414|gb|ABM61994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
          Length = 354

 Score = 84.4 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 24/254 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYD 75
           P+  + V  +SGG+DS + A +++  G  V G+               +G         +
Sbjct: 2   PEQPKAVALISGGLDSMLAARVVQDQGVHVEGINFYTGFCVEGHTHAIRGKDQDRPKRNN 61

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V + + +  ++ D  E ++  +  P    Y  G    PC+DC   +         + 
Sbjct: 62  ALWVAEQLGMPLHIVDVIEEYKEVLTNP---RYGYGANLNPCLDCKVFM-VGKAREWIQA 117

Query: 136 LGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFL---FATTQQ 183
            G D + TG  I  R           +  D +   ++ RP+  +  +           ++
Sbjct: 118 NGFDFIVTGEVIGQRPKSQTRDKLPVITRDAQVEDLLLRPLSAKLLEPTRPEREGWVDRE 177

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALE 242
           +L +L    G  +K     LAR +GL+   +  +   CF+    Y   +  +  A  A  
Sbjct: 178 RLYELH---GRSRKPQ-FALARSLGLESWAQP-AGGCCFLTDASYSAKLADLWQARGARA 232

Query: 243 GDIVHLNGQILGRH 256
            D+  +    +GRH
Sbjct: 233 YDLDDIMLLKVGRH 246


>gi|300113174|ref|YP_003759749.1| tRNA methyl transferase-like protein [Nitrosococcus watsonii C-113]
 gi|299539111|gb|ADJ27428.1| tRNA methyl transferase-like protein [Nitrosococcus watsonii C-113]
          Length = 347

 Score = 84.4 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 124/365 (33%), Gaps = 54/365 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  + +  +SGG+DS +   +++  G  V G+    + +    +        +D   A+R
Sbjct: 3   RQYKAIALVSGGLDSMLAVKVIQEQGIHVEGI---NFFTGFCVEGHTHAIRNKDKNKAKR 59

Query: 79  -----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                V + + +  ++ +  E ++N V+ P    Y  G    PC+DC   +     L+  
Sbjct: 60  NNALWVAEQLGIKLHMIEVIEEYKNVVLNP---KYGYGANLNPCLDCKSFM-VGKALAWM 115

Query: 134 RQLGADVLATGHY---------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           ++   D + TG            ++   V  +     ++ RP+  +             +
Sbjct: 116 KENNFDFIITGEVVGQRPKSQRAKTMPVVARESGAHDLLLRPLCAKNLPLTLPEREGWVE 175

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEG 243
              L    G  +K  +  LA   G++   +  +   CF+    Y   +  +  A    + 
Sbjct: 176 RDGLYDFSGRSRKPQM-ALAAHFGIEGYAQP-AGGCCFLTDANYSAKLADLWQARSTRDY 233

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYLDKNSSRVIVGPRESLEVH 301
           ++  +    +GRH                    P F  +V  D   +  + G  ++    
Sbjct: 234 ELDDIMLLKVGRHL----------------RPRPHFKLIVARDLGENNYLEGYAKAFTHL 277

Query: 302 RIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVDFEKSE 356
           R    +  +  +   L +D +V   +   +  S     P   V V R     ++      
Sbjct: 278 RTVSHKGPLTLVDGALEKDDMVLASQLVARF-SQGREAPQVQVKVARPGGEAHIL----- 331

Query: 357 VGVAS 361
             VA 
Sbjct: 332 -AVAP 335


>gi|257459826|ref|ZP_05624932.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257442678|gb|EEV17815.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 260

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 55/197 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDV-----IGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            VA SGGVDSS    LL R  +D      IG+T++               + +++ +A  
Sbjct: 18  AVAFSGGVDSS----LLLRAAHDALGARAIGITIR-----------SPYMSSREIAEAVE 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 + H + +              +          C  C + V FS L+   R+LG 
Sbjct: 63  FASIYGIRHEILELS-----------VAERIKDNPENRCYLCKKAV-FSRLIERARELGF 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A G          D G+ R  +    +L                  +  PL ++ K 
Sbjct: 111 SHVADG------TNRDDLGEHRPGLKAKEELG-----------------VLSPLINLTKS 147

Query: 199 SVRDLAREMGLDIADKS 215
            +R+L+RE+GL  A+K 
Sbjct: 148 EIRELSRELGLPTAEKP 164


>gi|237756601|ref|ZP_04585118.1| thiamine biosynthesis protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691232|gb|EEP60323.1| thiamine biosynthesis protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 355

 Score = 84.1 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 110/284 (38%), Gaps = 38/284 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG---QDVYDA 76
             + V   SGG+DS++   L++  G DV+ +          +KR+           +  A
Sbjct: 2   KRKAVALYSGGLDSTLAIKLVQNQGIDVLALHFYTGFCITETKRRRGEKKEDGSHYINPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +          + D  + + + ++ P    +  G    PC+DC   + F     + +++
Sbjct: 62  LKFAAKYGFPLEIVDISDGYMDVILNP---KFGYGANINPCIDCRIYM-FKKAKEIMQEV 117

Query: 137 GADVLATGHYIRSRL---------YVGDDGKRRRIMCRPMDLERDQSYFL---FATTQQQ 184
           GAD + +G  +  R           +  +     ++ RP+  ++             +++
Sbjct: 118 GADFVISGEVLGQRPKSQKSIPLKIIEREAGLEGLILRPLSAKKLPPTIPEINGWVDREK 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +   +G  +K  + +LA+E+G+D  +   +   C++    Y     +    +A+EG 
Sbjct: 178 LEGI---VGRSRKRQI-ELAKELGIDEYESP-AGGCCYLTDENYA---YKYKETMAVEGK 229

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
           I   +         ++ +T+G  R   +  G  L V   +  ++
Sbjct: 230 ITQED---------LVLFTVG--RHFRLDSGTKLIVSRNEGENN 262


>gi|256810614|ref|YP_003127983.1| NAD+ synthetase [Methanocaldococcus fervens AG86]
 gi|256793814|gb|ACV24483.1| NAD+ synthetase [Methanocaldococcus fervens AG86]
          Length = 253

 Score = 84.1 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 42/191 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V A L  +  G Y V+G+ +                  +DV  A+ V 
Sbjct: 24  VVIGLSGGIDSAVTAYLCVKALGKYRVLGIIM-----------PEKNTNPKDVEHAKMVA 72

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + + + D         I     ++ AG                           D 
Sbjct: 73  ENLGIKYTISD---------ITDILKAFGAGG-------------------YVPTREFDK 104

Query: 141 LATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +A G+   R R+ +      +  +       + + Y  + T          P+G++ K  
Sbjct: 105 IADGNLKARIRMCILYYFANKYNLLVAGTSNKSEIYVGYGTKYGDTACDIRPIGNLFKTE 164

Query: 200 VRDLAREMGLD 210
           VR+LA+ +G+ 
Sbjct: 165 VRELAKYLGVP 175


>gi|32266697|ref|NP_860729.1| hypothetical protein HH1198 [Helicobacter hepaticus ATCC 51449]
 gi|32262748|gb|AAP77795.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 348

 Score = 84.1 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +   SGG DS +   LLK  G DVI +   +          G       +   +     I
Sbjct: 4   LALFSGGCDSLISMKLLKDQGIDVIALHFNI----------GFGSNKDKLAYFQNATAQI 53

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           +V   + D +++F N V+  F   Y  G+   PC+DC+  + F++      Q+GAD + +
Sbjct: 54  DVKLQILDIQQQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FANAFDYLLQVGADFVVS 110

Query: 144 GHYIRSRLYVG 154
           G  +  R    
Sbjct: 111 GEVLGQRPKSQ 121


>gi|213857827|ref|ZP_03384798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 89

 Score = 84.1 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           P+GD  K  +R  A   GL +A+K DS DICF+  G     +          G +V  +G
Sbjct: 1   PIGDTPKRQIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADG 58

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP 277
            +L  H+G+  +TIGQRRGLG+A   P
Sbjct: 59  VVLASHDGVHGFTIGQRRGLGIAGPGP 85


>gi|254428409|ref|ZP_05042116.1| tRNA methyl transferase [Alcanivorax sp. DG881]
 gi|196194578|gb|EDX89537.1| tRNA methyl transferase [Alcanivorax sp. DG881]
          Length = 361

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 98/260 (37%), Gaps = 29/260 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYD 75
           P   R +  +SGG+DS +   +++  G +V GV               +      +   +
Sbjct: 7   PIKRRAIALVSGGLDSMLAVKVMQEQGIEVEGVNFYTGFCVEGHTHAIRKKDKDKEKRNN 66

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVT 133
           A  V + + +  ++ D  E +++ V+ P    +  G    PC+DC   +  + + +++  
Sbjct: 67  ALWVAEQLGIKMHIIDISEEYKDVVLNP---KHGYGANLNPCLDCKIFMVNQATLMINKA 123

Query: 134 RQL----GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFL--- 177
           R+L    G D + TG  I  R           +  +      + RP+  +          
Sbjct: 124 RELAGDRGFDFIVTGEVIGQRPKSQRKETMPIISQESGADDRLLRPLCAQNLPPTLPERE 183

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-N 236
               + +L D     G  +K  +  LA + GLD   +  +   CF+    Y + +  +  
Sbjct: 184 GWVNRDELHDFS---GRNRKPQM-ALAAKFGLDDFAQP-AGGCCFLTDESYSNKLADLWK 238

Query: 237 AGIALEGDIVHLNGQILGRH 256
           A      ++  +    +GRH
Sbjct: 239 ARNERRYELDDIMLLKVGRH 258


>gi|238612598|ref|XP_002398258.1| hypothetical protein MPER_01181 [Moniliophthora perniciosa FA553]
 gi|215474412|gb|EEB99188.1| hypothetical protein MPER_01181 [Moniliophthora perniciosa FA553]
          Length = 147

 Score = 83.7 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 23/122 (18%)

Query: 294 PRESLEVHRIYLREINWLGDGLFEDAV--VDGFKCFVKIRSSQDPVPVFV---------- 341
             + L+   + LR+ +W+        +   +GFK F KIR     VP  V          
Sbjct: 1   DNKLLQCDTVVLRDWSWIWRDTLPPGLSTTEGFKGFAKIRHRMSAVPCTVKLIAVSAIPS 60

Query: 342 -------QRNDDGVYVDFEKS--EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
                  QR +  + V F     + GV+ GQ    + SD      LG G IS +   D V
Sbjct: 61  VFTRADAQRQEQALTVTFSDPYIQNGVSPGQIAAIWDSD--GEWCLGCGTISAAYSMDLV 118

Query: 393 EE 394
             
Sbjct: 119 TA 120


>gi|169839707|ref|ZP_02872895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
          [candidate division TM7 single-cell isolate TM7a]
          Length = 42

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          K  RVV+ MSGGVDSSV A LLK  GYDVIGV +++
Sbjct: 3  KRKRVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKI 38


>gi|77166112|ref|YP_344637.1| hypothetical protein Noc_2654 [Nitrosococcus oceani ATCC 19707]
 gi|254435585|ref|ZP_05049092.1| tRNA methyl transferase [Nitrosococcus oceani AFC27]
 gi|76884426|gb|ABA59107.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207088696|gb|EDZ65968.1| tRNA methyl transferase [Nitrosococcus oceani AFC27]
          Length = 347

 Score = 83.3 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 94/256 (36%), Gaps = 30/256 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  + +  +SGG+DS +   +++  G  V G+    + +    +        +D   A+R
Sbjct: 3   RQYKAIALVSGGLDSMLAVKVIQEQGIHVEGI---NFFTGFCVEGHTHAIRNKDKNRAKR 59

Query: 79  -----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                V + + +  ++ +  E ++  V+ P    Y  G    PC+DC   +     L+  
Sbjct: 60  NNALWVAEQLGIKLHMIEVIEEYKEVVLNP---KYGYGANLNPCLDCKSFM-VGKALAWM 115

Query: 134 RQLGADVLATGHY---------IRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATT 181
           ++   D + TG            ++   V  +     ++ RP+  +              
Sbjct: 116 KENNFDFIITGEVVGQRPKSQRAKTMPVVARESGAHDLLLRPLCAKNLPITLPEREGWVD 175

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIA 240
           +  L D     G  +K  +  LA   G++   +  +   CF+    Y   +  +  A   
Sbjct: 176 RDGLYDFS---GRSRKPQM-ALAAHFGIEGYAQP-AGGCCFLTDANYSAKLADLWQARST 230

Query: 241 LEGDIVHLNGQILGRH 256
            + ++  +    +GRH
Sbjct: 231 RDYELDDIMLLKVGRH 246


>gi|313681210|ref|YP_004058948.1| queuosine synthesis [Sulfuricurvum kujiense DSM 16994]
 gi|313154070|gb|ADR32748.1| Queuosine synthesis [Sulfuricurvum kujiense DSM 16994]
          Length = 323

 Score = 82.9 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++ A L+   G +VI            +   G       +   + +C
Sbjct: 1   MKAIALFSGGLDSTLAAKLIIDQGIEVIAC----------NINTGFGSTKDRLAHMKNMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + I       D  + +   V+  F   Y  G+   PC+DC+  + F     V  + GA  
Sbjct: 51  EQIGAEFRSVDIRDEYIREVL--FTPKYGYGKNFNPCIDCHAKM-FEVAKRVMEEWGASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           L +G  +  R    +    ++++       
Sbjct: 108 LISGEVLGQRPMSQNSESLQKVLNLSNCEG 137


>gi|225850620|ref|YP_002730854.1| thiamine biosynthesis protein [Persephonella marina EX-H1]
 gi|225645577|gb|ACO03763.1| thiamine biosynthesis protein [Persephonella marina EX-H1]
          Length = 352

 Score = 82.5 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 101/301 (33%), Gaps = 54/301 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    K  + V   SGG+DS++   L++  G DV  V          +KR+         
Sbjct: 1   MLGKMKGKKAVALYSGGLDSTLAIKLIQNQGIDVTAVHFYTGFCITETKRRRGEKKEDGS 60

Query: 74  YD---ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +    A +          + D  + + N V  P    Y  G    PC+DC   + +    
Sbjct: 61  HYMNPALKYAAKYGFKLEIVDISDEYFNIVTNP---KYGYGSNINPCIDCRAFM-YKKAR 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +   +GAD L +G  +  R              + M +   ++       +     +  
Sbjct: 117 EIMEDIGADFLVSGEVLNQRPMSQ--------HLKAMKIIEREAGVEGLVVKPLSAKVLP 168

Query: 191 P-----------------LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           P                 +G  +K  + +LA++ G+D  ++  +   C++         +
Sbjct: 169 PTIPEIRGWVDRNKLEGIVGRSRKRQL-ELAKQFGIDEYEQP-AGGCCYLTDEN---FAR 223

Query: 234 RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM--------GEPLFVVYLDK 285
           + N  I+ +G I   +         +   TIG+   L            GE  F+  L K
Sbjct: 224 KYNEVISFQGSISRDD---------LYLLTIGRHFRLPSGTKVIVTRNEGEGRFIRGLSK 274

Query: 286 N 286
           N
Sbjct: 275 N 275


>gi|217967878|ref|YP_002353384.1| protein of unknown function DUF814 [Dictyoglomus turgidum DSM 6724]
 gi|217336977|gb|ACK42770.1| protein of unknown function DUF814 [Dictyoglomus turgidum DSM 6724]
          Length = 327

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 91/258 (35%), Gaps = 53/258 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  R +  +SGG+DS +   L+ +   DVIG+T                    ++  A+R
Sbjct: 2   KKARAISLISGGLDSILATWLILQQNIDVIGITF--------------STPFFNLERAKR 47

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ +N+  ++ D  E + + +  P    +  G+   PC+DC+  +       + ++  A
Sbjct: 48  ACEFLNIPLHIVDITEEYMDILKNP---RFGYGKNMNPCIDCHAFM-VKKAKELLKEFNA 103

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + + TG  +  R    +  K+   +        D          + L     P     K 
Sbjct: 104 EFIITGEVLGERPMSQN--KQSLKLVEKYSGTED-------ILLRPLSAKLLPP---TKP 151

Query: 199 S------------VR--------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
                        ++        +LA+++GL   +       C + +  +   +K +   
Sbjct: 152 EREGLVDREKLLDIKGRSRKVQLELAKKIGL--KEIPTPAGGCLLTEPNFSRRLKDLLEH 209

Query: 239 IALEGDIVHLNGQILGRH 256
                +   L    +GRH
Sbjct: 210 -NKNMNRRDLELLKIGRH 226


>gi|149133681|gb|ABR21024.1| tRNA methyltransferase [Rhodothermus sp. XMH10]
          Length = 51

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 3/46 (6%)

Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCC 68
          AMSGGVDSSV AALL   GY+V+G+T++ ++   +  R G    CC
Sbjct: 2  AMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCC 47


>gi|161529233|ref|YP_001583059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosopumilus maritimus SCM1]
 gi|160340534|gb|ABX13621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosopumilus maritimus SCM1]
          Length = 337

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 125/343 (36%), Gaps = 59/343 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +  +  +VV  +SGG+DS +   +++  G+DV  V ++   +       G  C  +  
Sbjct: 1   MTEEKEKKKVVALLSGGLDSQLAVRMMQEQGFDVSAVAIK---TPFCDFDCGRGCGFE-- 55

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              R   D +NV+       + +   +  P    +  G    PC+DC R + F       
Sbjct: 56  --IRERADDLNVNLKTVYLGDEYIEMLKNP---KHGIGAGFNPCIDC-RAMMFDAAKKHM 109

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++GA+ + +G  +  R          R   R ++ E D    L     + L     P  
Sbjct: 110 EEIGAEFIVSGEVLGQRPMSQ-----HRPALRTIEKESD----LVGKIVRPLSAALLPET 160

Query: 194 DMKKES---------VR--------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
             +KE          +R        D+A++ G++     ++   C + + ++    K + 
Sbjct: 161 IPEKEGLIKRENLGMIRGRTRRNQLDMAKQYGIEN--PPNAGGGCLLTEPQFGIKAKDLF 218

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG--- 293
             +     I  ++   +GRH          R        E  FVV  +K+ + +I     
Sbjct: 219 NHVENP-TINDIDLLKIGRH---------FRL-----DEETKFVVGRNKDENEMIKAIAL 263

Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           P + L   + ++   + L     +D     F   V +R S  P
Sbjct: 264 PNDILLEAKDHVGPTSILRGKNAKDHT--KFAAAVTLRYSDAP 304


>gi|118579504|ref|YP_900754.1| thiamine biosynthesis protein [Pelobacter propionicus DSM 2379]
 gi|118502214|gb|ABK98696.1| thiamine biosynthesis protein [Pelobacter propionicus DSM 2379]
          Length = 335

 Score = 82.1 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 94/272 (34%), Gaps = 38/272 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--AR 77
             + +   SGG+DS +   L++  G +V  V               SC +     D  A 
Sbjct: 2   KRKALALFSGGLDSILAVRLMQEQGIEVEAV--------SFVLPFFSCSSDGTERDLAAA 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   + +  +V ++   F   +  P    Y     P      +  VK         + G
Sbjct: 54  RVARHLGIPIWVINFGPEFLELIRNP-LHGYGKAVNPCIDCRIHMLVKAR---EQMVKCG 109

Query: 138 ADVLATGHYIRSRLY---------VGDDGKRRRIMCRPMDLERDQSYFL---FATTQQQL 185
           AD + TG  +  R           V  +     ++ RP+     +           +++L
Sbjct: 110 ADFIITGEVLGQRPMSQRRDTMSVVERESGLEGLLLRPLSALHFEPTIPEREGWVDRERL 169

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             ++   G  +KE +R LA E+G  + +  +    C + +  +   V+ +        D 
Sbjct: 170 AAIK---GRSRKEQMR-LADELG--VTEYPNPGGGCLLTEVSFAPKVRDLFEHCDQ-LDP 222

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
                  +GRH     + +G+R  L +   E 
Sbjct: 223 RDFRLLRIGRH-----FRLGERCKLIIGRDER 249


>gi|301299185|ref|ZP_07205473.1| argininosuccinate synthase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853213|gb|EFK80809.1| argininosuccinate synthase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 403

 Score = 81.7 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 31/200 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV  A LK  GYDVI   + +   +     K        V     
Sbjct: 2   EKEKVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGAVES--- 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                     V D +  F    ++P    YA  E   P V   +R +    L+ V ++ G
Sbjct: 59  ---------IVIDAKHEFAEEYVLPALQGYAYYENKYPLVSALSRPLIVKKLVEVAKEHG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G                    +  D  R +        + ++ D    L   ++
Sbjct: 110 ATAIAHG-----------------CTGKGNDQVRFEVGIHALVPEMKIEDPIRDLHWSRE 152

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E + + A+E G+ +     S
Sbjct: 153 EEI-EYAKENGIPVPISKKS 171


>gi|14590222|ref|NP_142287.1| hypothetical protein PH0300 [Pyrococcus horikoshii OT3]
 gi|3256690|dbj|BAA29373.1| 310aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 310

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 29/195 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R++VA+SGG DS+V A +LK+ GY++  + + L  S  + K +           A++
Sbjct: 46  KDERILVAVSGGKDSAVTAYVLKKLGYNIECLHINLGISGYSEKSE---------EYAKK 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  I    ++   +E     ++            P PC  C  T ++  +       G 
Sbjct: 97  QCKLIGAPLHIVRIKE-----ILGYGIGEVKT-RRP-PCSYCGLTKRY-IMNKFAYDNGF 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D +ATGH +        +         + +   +   Q  F+             PL ++
Sbjct: 149 DAIATGHNLDDEASFLLNNILHWNTEYLAKGGPILPQQGKFIKKVK---------PLYEV 199

Query: 196 KKESVRDLAREMGLD 210
            +  V   A  +GL+
Sbjct: 200 TEREVVAYALAVGLE 214


>gi|169840824|ref|ZP_02873937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [candidate division TM7 single-cell isolate TM7a]
          Length = 65

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 144 GHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           GHY R      +D   +RI   M R +D  +DQ+YFL   +Q+QL  + FPLG+  K  +
Sbjct: 5   GHYARIIHEEVEDENGKRIKSTMLRGVDDNKDQTYFLCQLSQEQLEKVLFPLGEYTKPQI 64

Query: 201 R 201
           R
Sbjct: 65  R 65


>gi|288818608|ref|YP_003432956.1| thiamine biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|288788008|dbj|BAI69755.1| thiamine biosynthesis protein [Hydrogenobacter thermophilus TK-6]
 gi|308752199|gb|ADO45682.1| Queuosine synthesis [Hydrogenobacter thermophilus TK-6]
          Length = 347

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 93/253 (36%), Gaps = 32/253 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ---DVYDARR 78
           R V  +SGG+DSS+   LLK  G ++  +           KR+           V  A R
Sbjct: 5   RAVALLSGGLDSSLAVHLLKDQGVEIKALYFYTGFCITEHKRRLGLKREDGQQYVNPAFR 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + V   V D  E + N V+ P    Y  G+   PC+DC R +       +  +   
Sbjct: 65  AAAQLKVPIEVVDVSEEYFNIVLNP---KYGYGKNVNPCIDC-RVLMLKKAKEIMEKEEY 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--LGDMK 196
             + TG  +  R       + + I            Y +   + + L +   P  LG + 
Sbjct: 121 HFVITGEVLGQRPMSQTRERLKLIEREAGLEG----YVVRPLSAKLLPETI-PEKLGWIS 175

Query: 197 KES---VR--------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           +E    +R        +LA++ GLD      +   C++    Y     R    + +EG I
Sbjct: 176 REKLLGIRGRGRNVQINLAKKYGLDYEQP--AGGCCYLTDENYA---ARFKEALVVEGSI 230

Query: 246 VHLNGQI--LGRH 256
              +  +  +GRH
Sbjct: 231 TREDLVLFSVGRH 243


>gi|163783771|ref|ZP_02178756.1| hypothetical protein HG1285_09931 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880960|gb|EDP74479.1| hypothetical protein HG1285_09931 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 348

 Score = 80.6 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 94/268 (35%), Gaps = 38/268 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ---DVYDARR 78
           R V  +SGG+DSS+   +L+  G +V  +           KR+           V  A +
Sbjct: 5   RAVALLSGGLDSSLAVRILQEQGVEVKALHFYTGFCITEHKRRLGLTKKDGRQYVNPALK 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
               + V   + D  E + N V+ P    +  G+   PC+DC        +L   +++  
Sbjct: 65  AAAQLGVPLDIVDISEDYYNIVLNP---KFGYGKNVNPCIDCRIF-----MLKKAKEIME 116

Query: 137 --GADVLATGHYIRSRLYVGD---------DGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
             G   + TG  +  R              +      + RP+  +R              
Sbjct: 117 REGYHFVITGEVLYQRPMSQTPDRLKLIEKESGLEGYILRPLSAKRLPPTIPEIKGWVDR 176

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             L   +G  +K  + +LA+  G++  ++  +   C++    Y     R     A EG I
Sbjct: 177 DKLYGIMGRGRKVQM-ELAKRFGIEEYEQP-AGGCCYLTDENYAF---RFREAFATEGSI 231

Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA 273
              +         +I +++G+   L   
Sbjct: 232 TRDD---------LILFSVGRHIRLPSG 250


>gi|329766102|ref|ZP_08257661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137373|gb|EGG41650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 350

 Score = 80.6 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 125/353 (35%), Gaps = 61/353 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV  +SGG+DS +   +++  G++V  V ++   +       G  C  +    A  
Sbjct: 19  EKKKVVALLSGGLDSQLAVRMMQEQGFEVSAVAIK---TPFCDFDCGRGCGFEIREKA-- 73

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +NV+       + +   +  P    +  G    PCVDC RT+ F+       ++GA
Sbjct: 74  --DDLNVNLKTVYLGDEYIEMLKHP---KHGIGAGFNPCVDC-RTMMFNAAKKHMEEIGA 127

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + + +G  +  R         R        +E+D S  +    +  L     P  D +K 
Sbjct: 128 EFIISGEVLGQRPMSQHAPSLRT-------IEKD-SGLVGKIVRP-LSAALLPETDPEKN 178

Query: 199 S---------VR--------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                     +R        ++A++ G++     ++   C +    +    K + +    
Sbjct: 179 GLIKRENLGMIRGRTRRAQLEMAKKYGIEN--PPNAGGGCLLTDPTFGLRAKDLFSHTET 236

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESL 298
              I  ++   +GRH          R           FVV  +K+ + +I     P + L
Sbjct: 237 P-TINDIDLLKIGRH---------FRLDEQTK-----FVVGRNKDENEMIKAIALPSDVL 281

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP--VPVFVQRNDDGVY 349
              R ++  ++ L     E+           +R S  P      V  N + V 
Sbjct: 282 FQARDHMGPVSILRGKDTEEYEKLVSAVT--LRYSDAPKGEQASVIINKNNVK 332


>gi|188997212|ref|YP_001931463.1| thiamine biosynthesis protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932279|gb|ACD66909.1| thiamine biosynthesis protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 355

 Score = 80.6 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 102/269 (37%), Gaps = 36/269 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
             + V   SGG+DS++   L++  G DV+ +          +KR+         +    A
Sbjct: 2   KRKAVALYSGGLDSTLAIKLVQNQGIDVLALHFYTGFCITETKRRRGEKKEDGSHYMNPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +          + D  + + + ++ P    Y  G    PC+DC   + F     + +++
Sbjct: 62  LKYAAKYGFPLEIVDISDGYMDVILNP---KYGYGANINPCIDCRIYM-FKKAKEIMQEV 117

Query: 137 GADVLATGHYIRSRL---------YVGDDGKRRRIMCRPMDLERDQSYFL---FATTQQQ 184
           GAD + +G  +  R           +  +     ++ RP+  ++             +++
Sbjct: 118 GADFVISGEVLGQRPKSQKSIPLKIIEKESGLEGLILRPLSAKKLPPTIPEINGWVDREK 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +   +G  +K  + +LA+E+ +D  +   +   C++    Y     +    + +EG 
Sbjct: 178 LEGI---VGRSRKRQI-ELAKELEIDEYESP-AGGCCYLTDENYA---YKYKETMEIEGK 229

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVA 273
           I   +         ++ +T+G+   L   
Sbjct: 230 ITQDD---------LVLFTVGRHFRLDSG 249


>gi|332158560|ref|YP_004423839.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2]
 gi|331034023|gb|AEC51835.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2]
          Length = 302

 Score = 80.2 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 35/244 (14%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K+ +V+VA+SGG DS+V A +LK+ GY++  + + L     + K +           AR
Sbjct: 45  KKNEKVLVAVSGGKDSAVTAYVLKKLGYNIECLHINLGIGEYSEKSEMY---------AR 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           + C+ I    ++    E     ++            P PC  C  T ++  +       G
Sbjct: 96  KQCELIGAKLHIVRIRE-----ILGYGIGEVRT-RRP-PCSYCGLTKRY-IMNKFAYDNG 147

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            D +ATGH +        +      M    R   +   Q  F+             PL +
Sbjct: 148 FDAIATGHNLDDEASFLLNNLLHWNMEYIARGGPILPRQGKFVKKVK---------PLYE 198

Query: 195 MKKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           + +  V   A  +GL+  + +   ++    +   +  + ++    G   + + V   G +
Sbjct: 199 VTEREVVAYALAIGLEYIVEECPYARGATTLDMKEILNELEEKRPGT--KYNFV--RGYV 254

Query: 253 LGRH 256
             +H
Sbjct: 255 KKKH 258


>gi|225849269|ref|YP_002729433.1| tRNA methyl transferase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644241|gb|ACN99291.1| tRNA methyl transferase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 349

 Score = 80.2 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 102/271 (37%), Gaps = 36/271 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
             + V   SGG+DS++   L++  G D++ V          +KR+         +    A
Sbjct: 2   KRKAVALYSGGLDSTLAIRLIQNQGIDILAVHFYTGFCITETKRRRGEKKEDGTHYMNPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +          + D  + + + ++ P    Y  G    PC+DC   + F     +  ++
Sbjct: 62  LKYAAKYGFPLEIVDISDGYMDVILNP---KYGYGANINPCIDCRIYM-FKKAKQIMEEI 117

Query: 137 GADVLATGHYIRSRL---------YVGDDGKRRRIMCRPMDLERDQSY---FLFATTQQQ 184
           GAD + +G  +  R           +  D     ++ RP+  +R             +++
Sbjct: 118 GADFIISGEVLGQRPKSQKSIPMKIIERDSGLEGLILRPLSAKRLPPTIPEIKGWVDREK 177

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L  +   +G  +K  + +LA+E+G+D  +   +   C++    Y     +    + +EG 
Sbjct: 178 LEGI---VGRSRKRQL-ELAKELGIDEFESP-AGGCCYLTDENYA---HKYRETMEVEGK 229

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275
           I   +         +I +T+G+   L     
Sbjct: 230 ITQED---------LILFTVGRHFRLDSGTK 251


>gi|323475431|gb|ADX86037.1| exsB protein [Sulfolobus islandicus REY15A]
          Length = 464

 Score = 80.2 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 47/231 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP----- 103
            +R+            R++ + + V     +  + F+              V        
Sbjct: 282 REREA----------VRKIAEHLQVPLIEIN-TDLFKMIGHATLIKGGGEIVKDRKGEEG 330

Query: 104 --FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             FA  +               + FS  L++    G D +A+G  +       D+     
Sbjct: 331 AEFAHEWVPARN---------LIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFI 381

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            M   +          +AT   +  ++  P+G++ K  +  L  E+G  + 
Sbjct: 382 RMLSKLSP--------YATGPNKKVEVLMPVGNLMKHEIVKLGYEIGAPLH 424


>gi|91203861|emb|CAJ71514.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 340

 Score = 79.8 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 125/351 (35%), Gaps = 66/351 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS++   +++  G +VI +       R  S   GSC        A +V +
Sbjct: 3   KALALLSGGLDSTLAIRVIQEQGIEVIALNFVTVFCRCTSH--GSCKLE-----AVKVSE 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +   V +  +RF   V  P    +  G+   PC+DC   + F       R++GAD +
Sbjct: 56  KFGIPIKVINTTDRFLEIVKKP---KHGYGKHMNPCIDCRINI-FHAAGDYMREIGADFI 111

Query: 142 ATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            TG  +  R         R I         + RP+  +  +              L    
Sbjct: 112 ITGEVLGQRPMSQRKEAMRIIDKEANLTGLVLRPLCAKHMEPTIPEKLGLVDREKLLQIR 171

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G  +KE +  LA     +I D   S   C +   ++   ++ +      + D+  +N   
Sbjct: 172 GRSRKEQI-QLADV--FEIKDYPCSAGGCLLTDPEFAHRMRDLIETS--DADVNDVNLLK 226

Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-------SLEVHRIYL 305
           +GRH                          +D N+++ IVG  E       +L     YL
Sbjct: 227 VGRH------------------------FKID-NTTKAIVGRNEAENERIAALFKSGDYL 261

Query: 306 RE-------INWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDG 347
                    I  L   + E+ +    +   +   SQ      V V+++++G
Sbjct: 262 LNLIDVPGPITLLRGEITEEKIHTSARITARYGKSQFLPQTKVAVRKSNNG 312


>gi|291534231|emb|CBL07344.1| conserved hypothetical protein TIGR00268 [Megamonas hypermegale
           ART12/1]
          Length = 270

 Score = 79.8 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 86/239 (35%), Gaps = 45/239 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDSSV    L +         + L +   A           ++ DA++V   
Sbjct: 17  VAVAFSGGVDSSV----LAKA------TQIALGDKAIAITAVSELITTNEISDAKKVAKL 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H      E F    +   A         + C  C+   +F  L    ++   + L 
Sbjct: 67  IGIKH------ELFT---VDDLADKKFTCNDKMRCYHCHIN-RFKLLEDFCQKNNYNYLL 116

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          D G  R  M    + +  +S FL                 + K+ +R 
Sbjct: 117 EG------SNEDDKGDYRPGMLALKEFKLTKSPFLEL--------------HITKDEIRQ 156

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYF-DVVKRINAGIALEGDIVH--LNGQILGRHNG 258
           +A++  L + +K  S   C   +  Y  DV       +A   +I+H  L GQI  RH+G
Sbjct: 157 MAKDWNLPVWNKPSS--ACLASRLIYGLDVTPERLNQVAKAENILHKFLQGQIRVRHHG 213


>gi|206901476|ref|YP_002251205.1| tRNA methyl transferase [Dictyoglomus thermophilum H-6-12]
 gi|206740579|gb|ACI19637.1| tRNA methyl transferase [Dictyoglomus thermophilum H-6-12]
          Length = 327

 Score = 79.8 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 90/258 (34%), Gaps = 53/258 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K +R +  +SGG+DS +   L+ + G +VIGVT                    ++   ++
Sbjct: 2   KKVRAISLISGGLDSILATWLILQQGIEVIGVTF--------------YTPFFNLELPKK 47

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ +N+  +V D  E +   +  P    +  G+   PC+DC+  +       +  +  A
Sbjct: 48  ACEFLNIPLHVVDITEEYMAILKNP---RFGYGKNMNPCIDCHTFM-VKKAKELLPKFDA 103

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + TG  +  R    +    R  +        D          + L     P     K 
Sbjct: 104 DFIITGEVLGERPMSQNKQSLR--LVEKYSGTED-------ILLRPLSAKLLPP---TKP 151

Query: 199 S------------VR--------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
                        ++        +LA+++GL   +       C + +  +   +K +   
Sbjct: 152 EREGWVDREKLLDIKGRSRKVQLELAKKIGL--KEIPTPAGGCLLTEPNFSRRLKDLLEH 209

Query: 239 IALEGDIVHLNGQILGRH 256
            +   D   L    +GRH
Sbjct: 210 -SKNFDKRDLKLLKIGRH 226


>gi|167045031|gb|ABZ09695.1| putative domain of unknown function (DUF814) [uncultured marine
           crenarchaeote HF4000_APKG8G15]
          Length = 349

 Score = 79.8 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV  +SGG+DS++    +++ G++V  V ++   +       G  C  +    A  
Sbjct: 18  EKKKVVALLSGGLDSTLAVKTMQKQGFEVSAVAIK---TPFCDFDCGRGCGFEIREKA-- 72

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + V        + +   +  P    +  G    PC+DC R + F        ++GA
Sbjct: 73  --DNLGVDLKTVYLGDEYVEMLKHP---KHGFGSGMNPCIDC-RAMMFEAGKKHMEEIGA 126

Query: 139 DVLATGHYIRSRLY-------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           + + +G  +  R                G +GK  R +   +    D         ++ L
Sbjct: 127 EFIISGEVLGQRPMSQFAPALKKIEKLSGLEGKIVRPLSAALLPPTDPE-KNGLIKRKDL 185

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             +R   G  +KE +R +A+E G++  D  ++   C +    +    K +   I     I
Sbjct: 186 GMIR---GRSRKEQLR-MAKEFGIE--DPPNAGGGCLLTDPAFSLRAKDLFKHIETP-TI 238

Query: 246 VHLNGQILGRH 256
             ++   +GRH
Sbjct: 239 NDIDLLKIGRH 249


>gi|223040559|ref|ZP_03610831.1| NAD+ synthetase [Campylobacter rectus RM3267]
 gi|222878194|gb|EEF13303.1| NAD+ synthetase [Campylobacter rectus RM3267]
          Length = 264

 Score = 79.8 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 43/188 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+VVAAL K  G+D   + +                + +++ DA ++C  +
Sbjct: 43  VLGVSGGIDSAVVAALCKCTGFDTHALLM-----------PAKHSSERNLSDALKLCSDL 91

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++H + + +      ++  F +       PLP       ++  +L +  R      L  
Sbjct: 92  KITHKIIEIQP-----ILESFVAQIGE---PLP------NLRMGNLSARARM----CLLY 133

Query: 144 GHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            +  R + L VG   K  R++              + T    +     P+G++ K  + +
Sbjct: 134 DYSARVNALVVGTSNKSERML-------------GYGTIYGDMACALNPIGELFKTEIYE 180

Query: 203 LAREMGLD 210
           LARE+G+D
Sbjct: 181 LARELGID 188


>gi|90961287|ref|YP_535203.1| argininosuccinate synthase [Lactobacillus salivarius UCC118]
 gi|119361283|sp|Q1WV65|ASSY_LACS1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|90820481|gb|ABD99120.1| Argininosuccinate synthase [Lactobacillus salivarius UCC118]
          Length = 403

 Score = 79.4 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 31/200 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV  A LK  GYDVI   + +   +     K        V     
Sbjct: 2   EKGKVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGAVES--- 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                     V D +  F    ++P    +A  E   P V   +R +    L+ V ++ G
Sbjct: 59  ---------IVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G                    +  D  R +        + ++ D    L   ++
Sbjct: 110 ATAIAHG-----------------CTGKGNDQVRFEVGIHALVPEMKIEDPIRDLHWSRE 152

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E + + A+E G+ +     S
Sbjct: 153 EEI-EYAKENGIPVPISKKS 171


>gi|227828356|ref|YP_002830136.1| exsB protein [Sulfolobus islandicus M.14.25]
 gi|229585586|ref|YP_002844088.1| exsB protein [Sulfolobus islandicus M.16.27]
 gi|238620549|ref|YP_002915375.1| exsB protein [Sulfolobus islandicus M.16.4]
 gi|227460152|gb|ACP38838.1| exsB protein [Sulfolobus islandicus M.14.25]
 gi|228020636|gb|ACP56043.1| exsB protein [Sulfolobus islandicus M.16.27]
 gi|238381619|gb|ACR42707.1| exsB protein [Sulfolobus islandicus M.16.4]
 gi|323478152|gb|ADX83390.1| exsB protein [Sulfolobus islandicus HVE10/4]
          Length = 464

 Score = 79.4 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 47/231 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP----- 103
            +R+            R++ + + V     +  + F+              V        
Sbjct: 282 REREA----------VRKIAEHLQVPLIEIN-TDLFKMIGHATLIKGGGEIVKDRKGEEG 330

Query: 104 --FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             FA  +               + FS  L++    G D +A+G  +       D+     
Sbjct: 331 AEFAHEWVPARN---------LIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFI 381

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            M   +          +AT   +  ++  P+G++ K  +  L  E+G  + 
Sbjct: 382 RMLSKLSP--------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIGAPLH 424


>gi|229579998|ref|YP_002838398.1| exsB protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581341|ref|YP_002839740.1| exsB protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998612|ref|YP_003420380.1| exsB protein [Sulfolobus islandicus L.D.8.5]
 gi|228010714|gb|ACP46476.1| exsB protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012057|gb|ACP47818.1| exsB protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446508|gb|ADB88010.1| exsB protein [Sulfolobus islandicus L.D.8.5]
          Length = 464

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 47/231 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP----- 103
            +R+            R++ + + V     +  + F+              V        
Sbjct: 282 REREA----------VRKIAEHLQVPLIEIN-TDLFKMIGHATLIKGGGEIVKDRKGEEG 330

Query: 104 --FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             FA  +               + FS  L++    G D +A+G  +       D+     
Sbjct: 331 AEFAHEWVPARN---------LIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFI 381

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            M   +          +AT   +  ++  P+G++ K  +  L  E+G  + 
Sbjct: 382 RMLSKLSP--------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIGAPLH 424


>gi|20806605|ref|NP_621776.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515049|gb|AAM23380.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 301

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V A +LKR GY+V+G  + L           +  + +      
Sbjct: 45  PPKGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDL-------GITQNDFSPRSREVVE 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++   + D +ER+   +         A      C  C  T K   +      + 
Sbjct: 98  NFCKEHDIPLEIVDLKERYGKDIPE------VAKRQDRICAICGVT-KRHLMNEYALSVN 150

Query: 138 ADVLATGHYI 147
           AD LATGH +
Sbjct: 151 ADALATGHTL 160


>gi|300214168|gb|ADJ78584.1| Argininosuccinate synthase(Citrulline--aspartate ligase)
           [Lactobacillus salivarius CECT 5713]
          Length = 403

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 31/200 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV  A LK  GYDVI   + +   +     K        V     
Sbjct: 2   EKEKVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGAVES--- 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                     V D +  F    ++P    +A  E   P V   +R +    L+ V ++ G
Sbjct: 59  ---------IVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G                    +  D  R +        + ++ D    L   ++
Sbjct: 110 ATAIAHG-----------------CTGKGNDQVRFEVGIHALVPEMKIEDPIRDLHWSRE 152

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E + + A+E G+ +     S
Sbjct: 153 EEI-EYAKENGIPVPISKKS 171


>gi|126652180|ref|ZP_01724362.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. B14905]
 gi|126591088|gb|EAZ85199.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. B14905]
          Length = 397

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV+A SGG+D+SV    LK  G+DVI V L                 G+D+   +  
Sbjct: 3   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCL-------------DVGEGKDLEFVKNK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  Y+ D ++ F     +    ++   E   P V   +R +    L+ +  Q+G
Sbjct: 50  ALQVGAIESYMVDAKDEFAENYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 109

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 110 ADAVAHG 116


>gi|149194636|ref|ZP_01871732.1| Thiamine biosynthesis protein:ExsB [Caminibacter mediatlanticus
           TB-2]
 gi|149135380|gb|EDM23860.1| Thiamine biosynthesis protein:ExsB [Caminibacter mediatlanticus
           TB-2]
          Length = 319

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 45/266 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L++  G +V G+ + +          G     + +   + V 
Sbjct: 1   MKALSLFSGGLDSLLAIKLIQDQGIEVEGLYINI----------GFESNKEKIKYLQEVA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +  N    V D  + +   ++  F   Y  G+   PC+DC+  +         ++  A  
Sbjct: 51  NKHNFKLTVIDARDEYIKKIL--FNPVYGYGKNFNPCIDCHAFMIRKAK-EYMKKSNAKF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-------- 192
           + +G  +  R         R      ++   +          + L     P         
Sbjct: 108 IISGEVVGQRPMSQ-----RLPALNAVNKLSE----ANGLILRPLSAKLLPPTIPEIKGW 158

Query: 193 ----------GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
                     G  +K  +  LA++  L+  +       C +    +   +K  +  + L 
Sbjct: 159 VDREKLLDISGRDRKRQL-ALAKKYNLEDFESPS--GGCLLTDINFAKRLKDYHKYLELT 215

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRR 268
            + + +     GRH  I  Y I   R
Sbjct: 216 PNEIDI--LKAGRHFNIEGYKIIISR 239


>gi|169828875|ref|YP_001699033.1| argininosuccinate synthase [Lysinibacillus sphaericus C3-41]
 gi|168993363|gb|ACA40903.1| Argininosuccinate synthase [Lysinibacillus sphaericus C3-41]
          Length = 403

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV+A SGG+D+SV    LK  G+DVI V L                 G+D+   +  
Sbjct: 9   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCL-------------DVGEGKDLEFVKNK 55

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  Y+ D ++ F     +    ++   E   P V   +R +    L+ +  Q+G
Sbjct: 56  ALQVGAIESYMVDAKDEFAENYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 115

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 116 ADAVAHG 122


>gi|227891841|ref|ZP_04009646.1| argininosuccinate synthase [Lactobacillus salivarius ATCC 11741]
 gi|227866304|gb|EEJ73725.1| argininosuccinate synthase [Lactobacillus salivarius ATCC 11741]
          Length = 409

 Score = 79.0 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 31/200 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV  A LK  GYDVI   + +   +     K        V     
Sbjct: 8   EKEKVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGAVES--- 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                     V D +  F    ++P    +A  E   P V   +R +    L+ V ++ G
Sbjct: 65  ---------IVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHG 115

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G                    +  D  R +        + ++ D    L   ++
Sbjct: 116 ATAIAHG-----------------CTGKGNDQVRFEVGIHALVPEMKIEDPIRDLHWSRE 158

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E + + A+E G+ +     S
Sbjct: 159 EEI-EYAKENGIPVPISKKS 177


>gi|15615749|ref|NP_244053.1| argininosuccinate synthase [Bacillus halodurans C-125]
 gi|20137501|sp|Q9K820|ASSY_BACHD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|10175810|dbj|BAB06906.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus
           halodurans C-125]
          Length = 409

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VV+A SGG+D+SV    L   GYDVI V L                 G+D+   + 
Sbjct: 2   SKKKVVLAYSGGLDTSVAIKWLSDKGYDVIAVGL-------------DVGEGKDLEFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  +  Y  D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q 
Sbjct: 49  KALKVGAIESYTIDAKKEFAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQT 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GAQAVAHG 116


>gi|294782620|ref|ZP_06747946.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481261|gb|EFG29036.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 334

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 107/316 (33%), Gaps = 41/316 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            + ++ +   SGG+DS++   +++  G +VIG+               S   G     A 
Sbjct: 2   KEKIKALALFSGGLDSALAIKVVQDQGVEVIGL------------NFVSHFFGGKNEKAE 49

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++ + + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + G
Sbjct: 50  KMAEQLGIKLEYIDFKKRHMFVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYG 105

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  + +G  +  R    +         + ++  +  S        + L     P     K
Sbjct: 106 AHFVISGEVLGQRPMSQN--------AQALEKVKKLSGM-EDLVLRPLSAKLLPP---SK 153

Query: 198 ESV-----RDLAREM-GLDIADKSDSQDIC-FVQQGKYFDVVKRINAGIALEGDIVHLNG 250
             +     R+   ++ G     + +  D    V+           + G +    ++  +G
Sbjct: 154 AEIMGWVDREKLLDINGRSRHRQMELMDSYGLVEYPSPGGGCLLTDPGYSSRLKVLEDDG 213

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYLR 306
            +   H+    + + +              V  DK S+  I   R+       +H   + 
Sbjct: 214 LLKDEHS--WLFKLIKEARFFRFSKGRYLFVGRDKESNMKIAEYRKEKNLKFYIHSAEVP 271

Query: 307 EINWLGDGLFEDAVVD 322
             + L +    D  ++
Sbjct: 272 GPHLLANVDLSDEEIE 287


>gi|282855633|ref|ZP_06264947.1| NAD+ synthetase [Pyramidobacter piscolens W5455]
 gi|282586563|gb|EFB91817.1| NAD+ synthetase [Pyramidobacter piscolens W5455]
          Length = 244

 Score = 78.7 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 65/201 (32%), Gaps = 44/201 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS+V AALLK   G + VI V +                   D   AR   +
Sbjct: 28  VVGLSGGIDSAVAAALLKGALGTERVITVYM------------PCHSIPLDGEHARLTAE 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     D  E +   V          G    P       +K               +
Sbjct: 76  ALGLKMLTVDLSETY--DVYRRTI-----GRVMEPSALAGANIKPRL-----------RM 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            T + I   L     G             +D+    + T          PL D+ K  VR
Sbjct: 118 ITVYSIAQTLGYLVCGTG----------NKDELTVGYFTKYGDGGSDFMPLADLTKAEVR 167

Query: 202 DLAREMGL--DIADKSDSQDI 220
            +ARE G+   + +K  S  +
Sbjct: 168 AIARETGVPPPVIEKPPSAGL 188


>gi|167527119|ref|XP_001747892.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773641|gb|EDQ87279.1| predicted protein [Monosiga brevicollis MX1]
          Length = 666

 Score = 78.7 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 77/210 (36%), Gaps = 37/210 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D + +V +SGGVDSSV AALL +  G++ V+ + +     R     K             
Sbjct: 218 DKKALVLVSGGVDSSVCAALLNKAVGHERVVALHIDNGFMRLDESVKVKVSL-------- 269

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSY---AAGETPLPCVDCNRTVKFSDLLS 131
              + + +  +V D  E F N    +     ++Y      ET  P  +  R +     + 
Sbjct: 270 ---ERLGLPLHVIDASEDFYNATTEIKRKDGTTYTTKRLKETTAP--EEKRKIIGDTFMR 324

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRP--------MDLERDQ--SYFLFATT 181
           V  +     + +   ++        G  R  +            D  +       L    
Sbjct: 325 VAEK-----VVSSFNLKPEDVFLAQGTLRPDLIESASKLASSNADAIKTHHNDTELVRLL 379

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
           ++Q   +  PL D  K+ VR+L R++GL  
Sbjct: 380 REQ-GRVLEPLKDYHKDEVRELGRQLGLAT 408


>gi|253581434|ref|ZP_04858659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
 gi|251836504|gb|EES65039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS++   ++K  G +VI +               S   G     A +
Sbjct: 3   KKIKALALFSGGLDSALAVKVIKDQGVEVIAL------------NFVSHFFGGKNEKAEK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +     D++ R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 51  MAEQLGIKLEYIDFKSRHTEIVKNPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGA 106

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 107 QFVISGEVLGQRPMSQN 123


>gi|227831113|ref|YP_002832893.1| exsB protein [Sulfolobus islandicus L.S.2.15]
 gi|227457561|gb|ACP36248.1| exsB protein [Sulfolobus islandicus L.S.2.15]
          Length = 464

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 47/231 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++VS   ++ +L + +  K  +V+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP----- 103
            +R+            R + + + V     +  + F+              V        
Sbjct: 282 REREA----------VRNIAEHLQVPLIEIN-TDLFKMIGHATLIKGGGEIVKDRKGEEG 330

Query: 104 --FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             FA  +               + FS  L++    G D +A+G  +       D+     
Sbjct: 331 AEFAHEWVPARN---------LIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFI 381

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            M   +          +AT   +  ++  P+G++ K  +  L  E+G  + 
Sbjct: 382 RMLSKLSP--------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIGAPLH 424


>gi|255321956|ref|ZP_05363106.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255301060|gb|EET80327.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 260

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 55/197 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDV-----IGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            VA SGG DSS    LL R  +D      IG+T++               + +++ +A  
Sbjct: 18  AVAFSGGADSS----LLLRAAHDALGERAIGITIR-----------SPYMSSREIAEAVE 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 + H + +              +          C  C + V FS L+   R+LG 
Sbjct: 63  FARIYGIRHEILELG-----------VAEEIKDNPENRCYLCKKAV-FSRLIERARELGF 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A G          D G+ R  +    +L                  +  PL ++ K 
Sbjct: 111 SRVADG------TNRDDLGEHRPGLKAKEELG-----------------VLSPLINLTKS 147

Query: 199 SVRDLAREMGLDIADKS 215
            +R+L+RE+GL  A+K 
Sbjct: 148 EIRELSRELGLPTAEKP 164


>gi|305664217|ref|YP_003860505.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378786|gb|ADM28625.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
          Length = 298

 Score = 77.9 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 45/205 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  ++VV  SGGVDS+    LL +  YDV+G      N+  A           ++ DA +
Sbjct: 31  EKEKIVVMFSGGVDST----LLAKLAYDVLG------NNAIAVTIDSPVIPRSEIRDAIQ 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQL 136
           +   I + H V +         I    + Y     P  C  C    KF D +  +  +++
Sbjct: 81  IAKLIGIRHEVIE---------IDELRNKYLVENPPDRCYLCR---KFRDAIVKNWAKRI 128

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G DV+A G      L+  D    R  +    +      +  F                  
Sbjct: 129 GFDVVADG------LHYTDLEDYRPGIAASTEDGIWHPFIEFQV---------------T 167

Query: 197 KESVRDLAREMGLDIADKSDSQDIC 221
           K+ +R+ +R +GL    K     +C
Sbjct: 168 KDEIREYSRLLGLPTWSKPSVACLC 192


>gi|109948168|ref|YP_665396.1| tRNA methyltransferase [Helicobacter acinonychis str. Sheeba]
 gi|109715389|emb|CAK00397.1| tRNA methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 350

 Score = 77.9 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 15/150 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCRP 166
           D + +G  +  R          + R + R 
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALDQVRKLVRA 138


>gi|317010295|gb|ADU84042.1| tRNA methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 350

 Score = 77.9 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 15/150 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCRP 166
           D + +G  +  R          + R + R 
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALDQVRKLVRA 138


>gi|163784843|ref|ZP_02179624.1| hypothetical protein HG1285_07966 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879890|gb|EDP73613.1| hypothetical protein HG1285_07966 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 341

 Score = 77.9 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 44/290 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
             + V   SGG+DS++   L++  G +VI +          +KR+         +    A
Sbjct: 2   KRKAVALYSGGLDSTLAIKLIQEQGIEVIALHFYTGFCITETKRRRGEKKEDGSHYMNPA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +       S  + D  E + + +  P    Y  G    PC+DC   + +        ++
Sbjct: 62  LKYAAKYGFSLEIIDISEGYFDIIQNP---KYGYGSNINPCIDCRAYM-YKHAKKYMEEI 117

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL---- 192
           GAD + +G  +  R              + M +   ++       +     L  P     
Sbjct: 118 GADFIISGEVLNQRPMSQ--------HLKAMKIIEKEAGVEGLVVKPLSAKLLPPTIPEK 169

Query: 193 -------------GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
                        G  +K  + +LA++ G+D  ++  +   C++         ++    I
Sbjct: 170 EGWIDREKLEGIAGRSRKRQI-ELAKKFGIDEYEQP-AGGCCYLTDEN---FARKYKEVI 224

Query: 240 ALEGDIVHLNG---QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286
           A E + +  +      +GRH        G +  +    GE  F+  + KN
Sbjct: 225 AFE-NTITRDELYLLTIGRH---FRLPTGTKVIVTRNEGEGNFIKGIRKN 270


>gi|319891938|ref|YP_004148813.1| Argininosuccinate synthase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161634|gb|ADV05177.1| Argininosuccinate synthase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464971|gb|ADX77124.1| argininosuccinate synthase [Staphylococcus pseudintermedius ED99]
          Length = 400

 Score = 77.9 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 37/202 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    L   GYDVI   L                 G+D+    + 
Sbjct: 2   KDKVVLAYSGGLDTSVAVKWLIEQGYDVIACCL-------------DVGEGKDLDLVYQK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  +V +  + F    +          E   P V   +R +    L+ +  +  
Sbjct: 49  ALNMGAIESHVINATKEFAEDYVGYTIKGNLMYEQTYPLVSALSRPLISKKLVEIAHETN 108

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
           A  +A G         G+D  R  +  + +D                   +  P+     
Sbjct: 109 AVAIAHG-----CTGKGNDQVRFEVAIKALDPN---------------LKVIAPVREWGW 148

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            +E   D A++  + +     S
Sbjct: 149 SREEEIDYAKKHNIPVPIGKAS 170


>gi|124026994|ref|YP_001012314.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123977688|gb|ABM79969.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus
           DSM 5456]
          Length = 341

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 43/246 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAA----LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K ++++VA+SGG DS+V  A    L K+ G +V  + L+L     ++K +          
Sbjct: 62  KGVKILVAISGGKDSAVTLAALSDLAKKYGIEVYAIHLRLGFGEFSAKVE---------E 112

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R +C+ + +   V D  E    AV  P          P  C  C   VK   L +   
Sbjct: 113 RVRSLCNMLGIPCIVVDVAE----AVGDPVHILARKARRPA-CSVCG-LVKRYFLNASAI 166

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +LGAD +A GH     +        +  + + ++          +     +  LR PL +
Sbjct: 167 ELGADYVALGHNADDIIAYS----IKAFLNQDLEALAKFGPVTTSIDDLAVARLR-PLYE 221

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
             +KE V   A   GL +         C                   +E  I  +  ++ 
Sbjct: 222 VYEKEDV-LYAILRGLPVVFDK-----C------------PFRPEAPMEDTIKEMINKLE 263

Query: 254 GRHNGI 259
            +H GI
Sbjct: 264 DKHPGI 269


>gi|299537867|ref|ZP_07051156.1| argininosuccinate synthase [Lysinibacillus fusiformis ZC1]
 gi|298726846|gb|EFI67432.1| argininosuccinate synthase [Lysinibacillus fusiformis ZC1]
          Length = 397

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV+A SGG+D+SV    LK  G+DVI V L                 G+D+   +  
Sbjct: 3   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCL-------------DVGEGKDLEFVKNK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  Y+ D ++ F     +    ++   E   P V   +R +    L+ +  Q+G
Sbjct: 50  ALQVGAIESYMVDAKDEFAEGYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 109

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 110 ADAVAHG 116


>gi|118576679|ref|YP_876422.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Cenarchaeum symbiosum A]
 gi|118195200|gb|ABK78118.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Cenarchaeum symbiosum A]
          Length = 336

 Score = 77.5 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 125/353 (35%), Gaps = 63/353 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  +VV  +SGG+DS +   ++++ G++V  V ++   +       G  C  +    A 
Sbjct: 4   PKKKKVVALLSGGLDSQLAVKMMQKQGFEVSAVAIK---TPFCDFDCGRGCGFEIHKRA- 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              D + V+       + +   +  P    +  G    PC+DC R + F        ++G
Sbjct: 60  ---DDLGVNLKTVYLGDEYIEMLKKP---KHGFGAGMNPCIDC-RAMMFEAAKKHMDEIG 112

Query: 138 ADVLATGHYIRSRLY-------------VGDDGKRRRIMCRP----MDLERDQSYFLFAT 180
           A+ + +G  +  R                G +GK  R +        D E+D        
Sbjct: 113 AEFIISGEVVGQRPMSQHRPALRTIEKESGLEGKIVRPLSAGLLPSTDPEKD-----GLI 167

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
            +     +R   G  +K  +  +A E G  I D  ++   C +    +    K + +   
Sbjct: 168 QRDDQGKVR---GRSRKPQL-AMAEEYG--IRDPPNAGGGCLLTDPAFGKRAKDLFSHTE 221

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRES 297
                  ++   +GRH     + + +   L         +V  + + + VI     P + 
Sbjct: 222 TP-TTNDIDLLKVGRH-----FRLDEESKL---------IVGRNHDENEVIKALALPGDV 266

Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV----PVFVQRNDD 346
           L   + +   I+ +       A   GF   V +R S  P      V V  + D
Sbjct: 267 LLEAKDHTGPISMIRGSSA--ARHTGFAAAVTLRYSDAPAGGGHAVIVTADGD 317


>gi|121534431|ref|ZP_01666254.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
 gi|121306924|gb|EAX47843.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
          Length = 274

 Score = 77.5 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 87/241 (36%), Gaps = 51/241 (21%)

Query: 24  VVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVA SGGVDS+ +AA  KR  G  V+ VT                   ++  DA R+   
Sbjct: 21  VVAFSGGVDSTFLAAAAKRVLGEKVVAVT-----------AVSPTSPQREQEDASRLAQV 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++H++    E  +                P  C  C +  +F  L++  ++     + 
Sbjct: 70  LEIAHFILPSGELDKQEF---------TANNPERCYFCKKE-RFGALVAWAQERNFHWV- 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
                       DD    R   R +               ++L  +R PL    M K  +
Sbjct: 119 ------IEASNADDLNDYRPGLRAL---------------RELAQVRSPLLEAGMTKAEI 157

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYF-DVVKRINAGIALEGDIVHL--NGQILGRHN 257
           R L+RE GL   DK  +   C V +  Y  ++       + +  + +     GQ   RH+
Sbjct: 158 RTLSREWGLPTWDKPSA--ACLVSRLAYGLEITADRLKQVEMAEEFLRTFYQGQFRVRHH 215

Query: 258 G 258
           G
Sbjct: 216 G 216


>gi|119872801|ref|YP_930808.1| NAD synthetase [Pyrobaculum islandicum DSM 4184]
 gi|119674209|gb|ABL88465.1| NH(3)-dependent NAD(+) synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 269

 Score = 77.5 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           VV+ +SGGVDS+V AAL       G  V+G+ +                  +D  DA  V
Sbjct: 37  VVIGLSGGVDSTVTAALAVEALGSG-RVLGLFM-----------PSIYTPKEDEKDAIEV 84

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +     D         I+P   +YA     +P    +  V   +++   R     
Sbjct: 85  ANRLGIRLIKVD---------IMPIVEAYAKS---IPDYSPDDRVSVGNIMPRVRM---- 128

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +   +Y      +      R  +      +    Y               P+G + K  
Sbjct: 129 SILY-YYANRYNMLVVGSGDRSELLLGYFTK----YGDGGVDF-------LPIGSLYKVQ 176

Query: 200 VRDLAREMGLDIADKSDS 217
           VR++AR +G     +  S
Sbjct: 177 VREMARRLGFGWISEKPS 194


>gi|307595994|ref|YP_003902311.1| Queuosine synthesis [Vulcanisaeta distributa DSM 14429]
 gi|307551195|gb|ADN51260.1| Queuosine synthesis [Vulcanisaeta distributa DSM 14429]
          Length = 235

 Score = 77.1 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + ++ +SGG+DS+V   LLK  GYDVI +++  Y  R   +R+           AR +
Sbjct: 2   KKKAILLLSGGIDSAVALYLLKSRGYDVIALSI-NYPGRGERERES----------AREL 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT---------VKFSDLL 130
               N      D    F   V           +   P    N           + ++   
Sbjct: 51  ARLTNTKLIEVDL--PFMREV-----DELWNNDDERPSHLRNAHPSTIPARNAIIYAVAA 103

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                 G D +  GH      Y  D  +  RR + R + +    +Y      + +   + 
Sbjct: 104 YYAEVFGIDTIVAGHNADDTKYFPDTSREFRRFISRALTIG---TY----IGRARGLRVI 156

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
            PL  + K  V  L  ++G+         +   V  G+    + R  A 
Sbjct: 157 APLSGLSKTDVVRLGLKLGVPFEYTWSCHNNYDVPCGQCSGCLARRRAF 205


>gi|317011869|gb|ADU82477.1| hypothetical protein HPLT_00060 [Helicobacter pylori Lithuania75]
          Length = 350

 Score = 77.1 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|325294366|ref|YP_004280880.1| hypothetical protein Dester_0164 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064814|gb|ADY72821.1| protein of unknown function DUF814 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 327

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V +  SGG+DS + A LLK  G++VIGV +             S    +++ D + 
Sbjct: 2   ERKKVYLLFSGGLDSIIAAKLLKDLGFEVIGVHI------------TSPFFQKNLEDLKN 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           +   + ++    +  + +   +  P    Y  G+   PC+DC        +L   ++L  
Sbjct: 50  LAKELGINLEFIEAGDDYLEMLKNPV---YGYGKNINPCIDCKAY-----MLRKIKELAK 101

Query: 138 ADVLATGHYIRSRLYVG 154
            +++ATG  +  R    
Sbjct: 102 GNIIATGEVLGQRPMSQ 118


>gi|308182199|ref|YP_003926326.1| hypothetical protein HPPC_00065 [Helicobacter pylori PeCan4]
 gi|308064384|gb|ADO06276.1| hypothetical protein HPPC_00065 [Helicobacter pylori PeCan4]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|222153770|ref|YP_002562947.1| argininosuccinate synthase [Streptococcus uberis 0140J]
 gi|254807533|sp|B9DVV9|ASSY_STRU0 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|222114583|emb|CAR43561.1| argininosuccinate synthase [Streptococcus uberis 0140J]
          Length = 399

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++KN    ++V+A SGG+D+SV  A LK+D +DVI V +                 G+D+
Sbjct: 1   MNKN----KIVLAYSGGLDTSVAIAWLKKD-FDVIAVCM-------------DVGEGKDL 42

Query: 74  YDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLS 131
                    I  +  YV D +E F  A ++P   ++A  E   P V   +R +    L+ 
Sbjct: 43  QFIHEKALKIGAIESYVIDVKEEFAEAFVLPALQAHAFYEQKYPLVSALSRPLISKKLVD 102

Query: 132 VTRQLGADVLATG 144
           +  + GA  +A G
Sbjct: 103 IAHECGATYIAHG 115


>gi|217031756|ref|ZP_03437260.1| hypothetical protein HPB128_155g69 [Helicobacter pylori B128]
 gi|216946603|gb|EEC25203.1| hypothetical protein HPB128_155g69 [Helicobacter pylori B128]
          Length = 191

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|317176819|dbj|BAJ54608.1| argininosuccinate synthase [Helicobacter pylori F16]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|317013437|gb|ADU80873.1| hypothetical protein HPGAM_00065 [Helicobacter pylori Gambia94/24]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|308183811|ref|YP_003927944.1| hypothetical protein HPSJM_00075 [Helicobacter pylori SJM180]
 gi|308059731|gb|ADO01627.1| hypothetical protein HPSJM_00075 [Helicobacter pylori SJM180]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|207108720|ref|ZP_03242882.1| hypothetical protein HpylH_04534 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 178

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|15611082|ref|NP_222733.1| hypothetical protein jhp0011 [Helicobacter pylori J99]
 gi|4154513|gb|AAD05593.1| putative [Helicobacter pylori J99]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|108562438|ref|YP_626754.1| hypothetical protein HPAG1_0013 [Helicobacter pylori HPAG1]
 gi|107836211|gb|ABF84080.1| argininosuccinate synthase [Helicobacter pylori HPAG1]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|325995283|gb|ADZ50688.1| tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2018]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|254479732|ref|ZP_05093019.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034329|gb|EEB75116.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 310

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V A +LKR GY+V+G  + L           +  + +      
Sbjct: 45  PPKGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDL-------GITQNDFSPRSREVVE 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++   V D +E++   +         A      C  C  T K   +      + 
Sbjct: 98  NFCKEHDIPLEVVDLKEKYGKGIPE------VAKRQDRICAICGVT-KRHLMNEYALSVN 150

Query: 138 ADVLATGHYI 147
           A  LATGH +
Sbjct: 151 AHALATGHTL 160


>gi|240103159|ref|YP_002959468.1| putative ATPase of the PP-loop superfamily [Thermococcus
           gammatolerans EJ3]
 gi|239910713|gb|ACS33604.1| Predicted ATPase of the PP-loop superfamily [Thermococcus
           gammatolerans EJ3]
          Length = 262

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 40/211 (18%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+    + + S   + +  D R++V  SGG DSS+   LLK  G DV  +T         
Sbjct: 1   MLEETISEIRSFVRETSLTDKRILVLFSGGKDSSLTLYLLKEAGLDVSALTF-------- 52

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEE-RFRNAVIVPFASSYAAGETPLPCVD 119
                     + +  A +    + V HY+ D  +   R AV          G     C+ 
Sbjct: 53  ---FHRWSWHETLRWAMKFTRKLGVEHYLVDITDGLLREAV----------GRKGPVCIH 99

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFL 177
           C R + ++         G ++LA G     ++     D  K    +CR            
Sbjct: 100 CKRVMLWNAKW-FALNNGFEILAKGDNANDKIIGALLDQCKGDIRLCR------------ 146

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
               +  L  +  PL     E V  LA E  
Sbjct: 147 --IPRIGLP-ILRPLIKYTAEEVERLAEEAD 174


>gi|207092202|ref|ZP_03239989.1| hypothetical protein HpylHP_04230 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 350

 Score = 77.1 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|224373210|ref|YP_002607582.1| thiamine biosynthesis protein:ExsB [Nautilia profundicola AmH]
 gi|223588685|gb|ACM92421.1| thiamine biosynthesis protein:ExsB [Nautilia profundicola AmH]
          Length = 319

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 95/264 (35%), Gaps = 41/264 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++   L++    ++ GV + +          G     Q     +++ 
Sbjct: 1   MKAIALFSGGLDSALAIKLIQEQNIEIEGVYIDV----------GFETNKQKTEHLQKLA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +   V D +E++   ++  F   Y  G+   PC+DC+  +         ++  A  
Sbjct: 51  DELGIKLTVLDIKEQYIKEIL--FNPVYGYGKNMNPCIDCHANM-IRVAKEYMKKTDAKF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-------------CD 187
           + +G  +  R        R   +     L   +   L   + + L               
Sbjct: 108 IISGEVVGQRPMSQ----RLPALNAVNKLANAEGLVLRPLSAKLLPPTVPEIEGWVERDK 163

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGD 244
           L    G  +K  + +LA++ GL+  +       C +    +   +K   +       E D
Sbjct: 164 LLGISGRDRKIQL-ELAKKYGLENFESPG--GGCLLTDINFSKRLKDFSKTLQLTPHEID 220

Query: 245 IVHLNGQILGRHNGIINYTIGQRR 268
           I+      +GRH  I  Y I   R
Sbjct: 221 IL-----KVGRHFNIDGYKIIISR 239


>gi|317008691|gb|ADU79271.1| hypothetical protein HPIN_00055 [Helicobacter pylori India7]
          Length = 350

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|15644646|ref|NP_206815.1| hypothetical protein HP0013 [Helicobacter pylori 26695]
 gi|2313087|gb|AAD07083.1| predicted coding region HP0013 [Helicobacter pylori 26695]
          Length = 350

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|298737103|ref|YP_003729633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
 gi|298356297|emb|CBI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
          Length = 350

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|307636697|gb|ADN79147.1| tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 908]
          Length = 350

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|254778749|ref|YP_003056854.1| hypothetical protein HELPY_0011 [Helicobacter pylori B38]
 gi|254000660|emb|CAX28569.1| Conserved hypothetical protein; putative signal peptide
           [Helicobacter pylori B38]
          Length = 350

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|210134212|ref|YP_002300651.1| argininosuccinate synthase [Helicobacter pylori P12]
 gi|210132180|gb|ACJ07171.1| argininosuccinate synthase [Helicobacter pylori P12]
          Length = 350

 Score = 76.7 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|208433988|ref|YP_002265654.1| arginino succinate synthase [Helicobacter pylori G27]
 gi|208431917|gb|ACI26788.1| arginino succinate synthase [Helicobacter pylori G27]
          Length = 350

 Score = 76.7 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|237740278|ref|ZP_04570759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
 gi|229422295|gb|EEO37342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
          Length = 334

 Score = 76.7 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            + ++ +   SGG+DS++   L++  G +VI +               S   G     A 
Sbjct: 2   KEKIKALALFSGGLDSALAIKLVQDQGVEVIAL------------NFVSHFFGGKNEKAE 49

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++ + + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + G
Sbjct: 50  KMAEQLGIKLEYIDFKKRHMFVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYG 105

Query: 138 ADVLATGHYIRSRLYVGD 155
           A  + +G  +  R    +
Sbjct: 106 AHFVISGEVLGQRPMSQN 123


>gi|312136978|ref|YP_004004315.1| nh(3)-dependent nad(+) synthetase [Methanothermus fervidus DSM
           2088]
 gi|311224697|gb|ADP77553.1| NH(3)-dependent NAD(+) synthetase [Methanothermus fervidus DSM
           2088]
          Length = 257

 Score = 76.7 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSSVVA L K+  G  +V G+ +                  +DV DA  + 
Sbjct: 29  VVLGLSGGIDSSVVAYLSKKALGSKNVFGLIM-----------PSETTKEEDVKDAISIA 77

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +++ + +         I P    + +      C      +  ++L    R      
Sbjct: 78  KNLGINYEIIN---------IEPILKKFRS-----MCKHKGNKIAIANLGPRVRM----T 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +   H       V   G  +  +      +    Y               P+GD+ K  V
Sbjct: 120 ILYYHSNSLNSLVAGTGN-KSELLIGYFTK----YGDGGVD-------ILPIGDLYKTQV 167

Query: 201 RDLAREMGLD--IADKSDSQDI 220
           R +A E+G+   I +K  S  +
Sbjct: 168 RKIAYELGVPKKIIEKPPSAGL 189


>gi|114566689|ref|YP_753843.1| hypothetical protein Swol_1163 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337624|gb|ABI68472.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 328

 Score = 76.7 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 96/275 (34%), Gaps = 54/275 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V   SGG+DS + AAL+K+ G  VIGV    ++S      + +              
Sbjct: 1   MKAVCLFSGGLDSQLAAALVKKQGVTVIGV---NFSSPFFGANRATHM----------AA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  +V D  + +   V+      Y  G+   PC+DC+  +         ++L A  
Sbjct: 48  KELGIQLFVLDTGKEYIEEVLKNPV--YGYGKNFNPCIDCHGYM-LRKAGEFMQKLDASF 104

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL------GD 194
           L +G  +  R    +         R      D+         + L     P       G 
Sbjct: 105 LISGEVLGQRPMSQN---------RSALNAVDKLSGFRGLVLRPLSARLLPATIPETEGW 155

Query: 195 MKKES---------VR--DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA--L 241
           + +E           R  +LA ++G  I D       C + +  +   +K++        
Sbjct: 156 VDREQLMDISGRGRTRQIELAEKLG--IYDYPTPAGGCLLTEASFSRRLKKLLELKPELE 213

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE 276
            G++  L    LGRH     + +G R  L V    
Sbjct: 214 AGEMEIL---KLGRH-----FYLGDRTLLAVGRNH 240


>gi|227529160|ref|ZP_03959209.1| argininosuccinate synthase [Lactobacillus vaginalis ATCC 49540]
 gi|227350923|gb|EEJ41214.1| argininosuccinate synthase [Lactobacillus vaginalis ATCC 49540]
          Length = 421

 Score = 76.4 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +     K                 
Sbjct: 10  KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGKQVGAWKSV----- 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +  F    ++P   ++A  E   P V   +R +    L++V R+ GA  
Sbjct: 65  -------VIDAKHDFAEQFVLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVAREYGATA 117

Query: 141 LATG 144
           +A G
Sbjct: 118 IAHG 121


>gi|255321438|ref|ZP_05362598.1| NAD+ synthetase [Campylobacter showae RM3277]
 gi|255301591|gb|EET80848.1| NAD+ synthetase [Campylobacter showae RM3277]
          Length = 251

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 47/190 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+VVAAL  R G +   + +                  +++ DA ++C  +
Sbjct: 28  VLGVSGGLDSAVVAALCARTGIETHALLM-----------PTKYSNERNLSDALKLCKDL 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAA--GETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            ++H + +         I P   S+ A  GE P         ++  +L +  R      L
Sbjct: 77  KITHKIIE---------IQPILDSFTAQIGEQP-------SNLRMGNLSARARM----CL 116

Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
              +  + + L VG   K  R++              + T    +     P+G++ K  +
Sbjct: 117 LYDYSAKVNALVVGTSNKSERLL-------------GYGTIYGDMACALNPIGELFKTEI 163

Query: 201 RDLAREMGLD 210
            +LARE+G+D
Sbjct: 164 YELARELGID 173


>gi|317060651|ref|ZP_07925136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313686327|gb|EFS23162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 332

 Score = 76.0 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 16/134 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +   SGG+DS++   +++  G +VI +    +     +++            A  +  
Sbjct: 5   KALALFSGGLDSALAIKIVQEQGIEVIALNFVSHFFGGVNEK------------AEYMAK 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +      +EER    V  P    Y  G+   PC+DC+  + F     +  + GA  L
Sbjct: 53  QLGIPLEYIHFEERHMEIVKAPV---YGRGKNMNPCIDCHSLM-FRVAGELLEKYGASFL 108

Query: 142 ATGHYIRSRLYVGD 155
            +G  +  R    +
Sbjct: 109 ISGEVLGQRPMSQN 122


>gi|257463047|ref|ZP_05627449.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
          Length = 333

 Score = 76.0 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 16/134 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +   SGG+DS++   +++  G +VI +    +     +++            A  +  
Sbjct: 6   KALALFSGGLDSALAIKIVQEQGIEVIALNFVSHFFGGVNEK------------AEYMAK 53

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +      +EER    V  P    Y  G+   PC+DC+  + F     +  + GA  L
Sbjct: 54  QLGIPLEYIHFEERHMEIVKAPV---YGRGKNMNPCIDCHSLM-FRVAGELLEKYGASFL 109

Query: 142 ATGHYIRSRLYVGD 155
            +G  +  R    +
Sbjct: 110 ISGEVLGQRPMSQN 123


>gi|291461244|ref|ZP_06027845.2| ThiI family protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378101|gb|EFE85619.1| ThiI family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 337

 Score = 76.0 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +    + ++ +   SGG+DS++   +++  G +VIG+               S   G   
Sbjct: 1   MKDLKEKIKALALFSGGLDSALAIKVVQDQGVEVIGL------------NFVSHFFGGKN 48

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A ++ + + +     D+++R    V  P    Y  G+   PC+DC+  + F     + 
Sbjct: 49  EKAEKMAEQLGIKLEYIDFKKRHMFVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELL 104

Query: 134 RQLGADVLATGHYIRSRLYVGD 155
            + GA  + +G  +  R    +
Sbjct: 105 EEYGAHFVISGEVLGQRPMSQN 126


>gi|227515369|ref|ZP_03945418.1| argininosuccinate synthase [Lactobacillus fermentum ATCC 14931]
 gi|227086283|gb|EEI21595.1| argininosuccinate synthase [Lactobacillus fermentum ATCC 14931]
          Length = 438

 Score = 76.0 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 31/197 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV  A LK  GYDVI   +   +  +    +     G  V   + V  
Sbjct: 14  KVVLAYSGGLDTSVEIAWLKNKGYDVIACCI---DVGEGKDLEAIKEKGLKVGAVKSV-- 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +E F +   +P   ++A  E   P V   +R +    L+ V ++ GA  
Sbjct: 69  -------VIDAKEEFASEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGATA 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A G                    +  D  R +          ++ D    +   ++E +
Sbjct: 122 IAHG-----------------CTGKGNDQVRFEVGIHALAPDMKIEDPIREVHWAREEEI 164

Query: 201 RDLAREMGLDIADKSDS 217
            D A+E G+ +     S
Sbjct: 165 -DYAKENGIPVPINKQS 180


>gi|299783595|gb|ADJ41593.1| Argininosuccinate synthase [Lactobacillus fermentum CECT 5716]
          Length = 429

 Score = 76.0 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 31/197 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV  A LK  GYDVI   +   +  +    +     G  V   + V  
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNKGYDVIACCI---DVGEGKDLEAIKKKGLKVGAVKSV-- 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +E F +   +P   ++A  E   P V   +R +    L+ V ++ GA  
Sbjct: 60  -------VIDAKEEFASEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGATA 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A G                    +  D  R +          ++ D    +   ++E +
Sbjct: 113 IAHG-----------------CTGKGNDQVRFEVGIHALAPDMKIEDPIREVHWAREEEI 155

Query: 201 RDLAREMGLDIADKSDS 217
            D A+E G+ +     S
Sbjct: 156 -DYAKENGIPVPINKQS 171


>gi|56964502|ref|YP_176233.1| argininosuccinate synthase [Bacillus clausii KSM-K16]
 gi|68566236|sp|Q5WED8|ASSY_BACSK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56910745|dbj|BAD65272.1| argininosuccinate synthase [Bacillus clausii KSM-K16]
          Length = 403

 Score = 76.0 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV    L   GYDVI V L                 G+D+   ++   
Sbjct: 5   KVVLAYSGGLDTSVAVKWLTDKGYDVIAVGL-------------DVGEGKDLEFVKQKAL 51

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  Y  D ++ +  + ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 52  QVGAIQSYTIDAKKEYAESFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAT 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|237738366|ref|ZP_04568847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420246|gb|EEO35293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 333

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  R +   SGG+DS++   ++K  G DVI +               S   G     A +
Sbjct: 3   KKRRALALFSGGLDSALAIKVIKDQGIDVIAL------------NFVSHFFGGKNEKAEK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +      +E+R    V  P    Y  G+   PC+DC+  + F     +  +  A
Sbjct: 51  MAEQLGIKVEYVHFEKRHTEVVKNPV---YGRGKNMNPCIDCHSLM-FKVAGELLEKYDA 106

Query: 139 DVLATGHYIRSRLYVGD 155
           D + +G  +  R    +
Sbjct: 107 DFVISGEVLGQRPMSQN 123


>gi|152989960|ref|YP_001355682.1| hypothetical protein NIS_0211 [Nitratiruptor sp. SB155-2]
 gi|151421821|dbj|BAF69325.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 329

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 87/256 (33%), Gaps = 43/256 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +R +   SGG+DS +   L+   G DVIG+              G   A Q      +
Sbjct: 2   SKIRALALFSGGLDSLLAMKLIIDQGVDVIGLHF--------DTGFGGRNAEQKKEYLEK 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLG 137
           +   I     + +  E+F   ++  F   Y  G+   PC+DC+   ++ +  L    +  
Sbjct: 54  ITQKIGAKLEIVNIREQFIQDIL--FDPKYGYGKHFNPCIDCHANMIRVAKAL--LPKFD 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG---- 193
           A  + +G  +  R        R   + +  DL             + L     P      
Sbjct: 110 AHFVISGEVVGQRPMSQ----RFDALKKVEDLSEAD-----GLILRPLSAKLLPPTLPEQ 160

Query: 194 ----DMKK--------ESVR-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
               D +K          V+ +LA++ G++  +       C +    +   ++      +
Sbjct: 161 KGWVDREKLYGISGRSREVQMELAKKYGIEDYESPS--GGCLLTDENFSTKIRDHIKYDS 218

Query: 241 LEGDIVHLNGQILGRH 256
              D+  ++    GRH
Sbjct: 219 F--DLEDIDVLKWGRH 232


>gi|307596131|ref|YP_003902448.1| NAD+ synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307551332|gb|ADN51397.1| NAD+ synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 289

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 47/192 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDSSV A LL +  G D VIG+ L                  +D+ DA+ V +
Sbjct: 38  VIGLSGGVDSSVTAYLLVKALGRDNVIGLIL-----------PYKTTPPEDIRDAKYVAE 86

Query: 82  TINVSHYVFD---YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           T+ + +Y  D       F  ++               P  D +  +   +LL   R    
Sbjct: 87  TLGIKYYYIDIGRIRNAFAESI---------------PGFDESDKIAVGNLLPRIRMTLL 131

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
              A                 R         ++ +    + T          P+GD+ K 
Sbjct: 132 YYFA----------------NRFNKVVAGTGDKSELLIGYFTKYGDGGVDILPIGDLYKT 175

Query: 199 SVRDLAREMGLD 210
            VR L + +GL 
Sbjct: 176 QVRYLGKYLGLP 187


>gi|95929128|ref|ZP_01311873.1| thiamine biosynthesis protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135029|gb|EAT16683.1| thiamine biosynthesis protein [Desulfuromonas acetoxidans DSM 684]
          Length = 324

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 48/226 (21%)

Query: 28  SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR--VCDTINV 85
           SGG+DS + A LL++ G DV  +                C       DA+   +    ++
Sbjct: 9   SGGLDSILAALLLRKQGVDVHCL----------------CFVTPFFDDAKAQEMAARYDL 52

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
              V D  E     +  P    Y  G+   PC+DC+  + F     +  + G D L +G 
Sbjct: 53  PLQVMDISEEHLKMLKNP---RYGYGKNMNPCIDCHAQM-FEIAGRLMEEQGYDFLFSGE 108

Query: 146 YIRSRL-------------YVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLR 189
            +  R                G  G+  R +     P+    +Q        ++QL D++
Sbjct: 109 VLGQRPKSQIHTALMAVNKASGWSGRILRPLSAKLLPITPMEEQ----GLVDREQLEDIQ 164

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
              G  +K   R  A    L +     S   C + +  +   ++ +
Sbjct: 165 ---GRSRK---RQEALARELGVDKYPSSGGGCLLTENSFSGRLRDL 204


>gi|261838884|gb|ACX98649.1| argininosuccinate synthase [Helicobacter pylori 52]
          Length = 350

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 99/295 (33%), Gaps = 42/295 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR------PMDLERDQSYFLFATTQ--QQL--- 185
           D + +G  +  R          + R + R        D   D++       Q   +L   
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDPILDRTQASAEKPQFLDELLLR 168

Query: 186 ---CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
                L  P    KK  V    RE  LD++ +  S+ +  +    Y      +       
Sbjct: 169 PMSAKLLEPTFMEKKGWV---DREKLLDVSGRGRSRQLQMI--KDYG-----LKYYEKPG 218

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
           G  +  + Q+  +   +  Y         +      FV+    N++R++V   E 
Sbjct: 219 GGCLLTDIQVSNKIKNLKEYREMVFEDSVIVKNGRYFVL---PNNARLVVARNEE 270


>gi|256752672|ref|ZP_05493523.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748434|gb|EEU61487.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 298

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 28/227 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V   +LKR GY+V+G  + L         +             
Sbjct: 45  PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDLGIEENNFSSQSR-------EVVE 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++   + + +E+F   +  P  +          C  C  T K   +   T  + 
Sbjct: 98  SFCKENDIPLEIVNLKEKFGKGI--PDVAK----RQDRICAICGVT-KRHLMNEYTLSVK 150

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMC---RPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           AD LATGH +     +      R  +    +   +  ++S F              PL  
Sbjct: 151 ADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEESGF---------ARKIKPLAF 201

Query: 195 MKKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGI 239
             +E +   A+   +    A    S++  + +  +  D+++  + GI
Sbjct: 202 QAEEEIIAFAKLHNIKPVTAVCPYSREAKYTRYQEALDMLEEKSPGI 248


>gi|167038552|ref|YP_001666130.1| PP-loop domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116948|ref|YP_004187107.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166857386|gb|ABY95794.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930039|gb|ADV80724.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 298

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 28/227 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V   +LKR GY+V+G  + L         +             
Sbjct: 45  PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDLGIEENNFSSQSR-------EVVE 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++   + + +E+F   +  P  +          C  C  T K   +   T  + 
Sbjct: 98  SFCKENDIPLEIVNLKEKFGKGI--PDVAK----RQDRICAICGVT-KRHLMNEYTLSVK 150

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMC---RPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           AD LATGH +     +      R  +    +   +  ++S F              PL  
Sbjct: 151 ADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEESGF---------ARKIKPLAF 201

Query: 195 MKKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGI 239
             +E +   A+   +    A    S++  + +  +  D+++  + GI
Sbjct: 202 QAEEEIIAFAKLHNIKPVTAVCPYSREAKYTRYQEALDMLEEKSPGI 248


>gi|223038753|ref|ZP_03609046.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222880155|gb|EEF15243.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 260

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 55/197 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRDGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            VA SGG DSS    LL R  +       IG+T++               + +++ +A  
Sbjct: 18  AVAFSGGADSS----LLLRAAHGALDARAIGITIR-----------SPYMSSREIAEAVE 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 + H + +              +          C  C + V FS L+   R+LG 
Sbjct: 63  FARAYGIRHEILELG-----------VAEGIKNNPENRCYLCKKAV-FSRLIERARELGF 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A G          D G+ R  +    +L                  +  PL ++ K 
Sbjct: 111 SRVADG------TNRDDLGEYRPGLKAKEELG-----------------VLSPLINLTKS 147

Query: 199 SVRDLAREMGLDIADKS 215
            +R+L+RE+GL  A+K 
Sbjct: 148 EIRELSRELGLPTAEKP 164


>gi|255321785|ref|ZP_05362940.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277]
 gi|255301265|gb|EET80527.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277]
          Length = 328

 Score = 75.2 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V  SGG+DS +   LL   G +V  + + +  S    K +            RR  
Sbjct: 1   MKALVLFSGGLDSMISIKLLTTQGIEVTAIHIDIGFSGDEKKAEIL----------RRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +       + D    +   V+  F   +  G+   PC+DC+  + F   L++    GA  
Sbjct: 51  NEAGAEFKIVDIRNEYLREVL--FTPKHGYGKHFNPCIDCHGYM-FKTALAMMSAEGASF 107

Query: 141 LATGHYIRSRLYVG 154
           +ATG  I  R    
Sbjct: 108 IATGEVIGQRPMSQ 121


>gi|15896988|ref|NP_341593.1| transcription regulator (exsB) related protein [Sulfolobus
           solfataricus P2]
 gi|284173860|ref|ZP_06387829.1| transcription regulator (exsB) related protein [Sulfolobus
           solfataricus 98/2]
 gi|74543016|sp|Q981C9|QUEC_SULSO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|13813145|gb|AAK40383.1| Transcription regulator (exsB) related protein [Sulfolobus
           solfataricus P2]
 gi|261601641|gb|ACX91244.1| exsB protein [Sulfolobus solfataricus 98/2]
          Length = 464

 Score = 75.2 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 47/231 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++V+    + +L + +  K  RV+V  SGG+DS+V A  L R+G++V  +    ++  + 
Sbjct: 222 VMVTSNKLITTLPIMEKRKKYRVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP----- 103
            +R+            R++ + + +     +  + F+              V        
Sbjct: 282 KEREA----------VRKIAEYLQIPLLEIN-TDLFKIIGHATLIKGGGEIVKDRKGEEG 330

Query: 104 --FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
             FA  +               + FS  L++    G D +A+G  +       D+     
Sbjct: 331 AEFAHEWVPARN---------LIFFSVSLAIAEAYGYDAIASGINLEEAGAYPDNEMEFI 381

Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            M   +          +AT   +  ++  P+G++ K  +  L  E+G  + 
Sbjct: 382 RMLNKLSP--------YATGPNKRIEILMPVGNLVKHEIVKLGYEIGAPLH 424


>gi|317179807|dbj|BAJ57593.1| argininosuccinate synthase [Helicobacter pylori F32]
          Length = 350

 Score = 75.2 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 99/295 (33%), Gaps = 42/295 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR------PMDLERDQSYFLFATTQ--QQL--- 185
           D + +G  +  R          + R + R        D   D++       Q   +L   
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDPILDRTQASAEKPQFLDELLLR 168

Query: 186 ---CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
                L  P    KK  V    RE  LD++ +  S+ +  +    Y      +       
Sbjct: 169 PMSAKLLEPTFMEKKGWV---DREKLLDVSGRGRSRQLQMI--KDYG-----LKYYEKPG 218

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
           G  +  + Q+  +   +  Y         +      FV+    N++R++V   E 
Sbjct: 219 GGCLLTDIQVSNKIKNLKEYREMVFEDSVIVKNGRYFVL---PNNARLVVARNEE 270


>gi|217034699|ref|ZP_03440102.1| hypothetical protein HP9810_880g10 [Helicobacter pylori 98-10]
 gi|216942839|gb|EEC22334.1| hypothetical protein HP9810_880g10 [Helicobacter pylori 98-10]
          Length = 350

 Score = 75.2 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAELLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|188526823|ref|YP_001909510.1| argininosuccinate synthase [Helicobacter pylori Shi470]
 gi|188143063|gb|ACD47480.1| argininosuccinate synthase [Helicobacter pylori Shi470]
          Length = 350

 Score = 75.2 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 99/295 (33%), Gaps = 42/295 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR------PMDLERDQSYFLFATTQ--QQL--- 185
           D + +G  +  R          + R + R        D   D++       Q   +L   
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDPILDRTQASGEKPQFLDELLLR 168

Query: 186 ---CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
                L  P    KK  V    RE  LD++ +  S+ +  +    Y      +       
Sbjct: 169 PMSAKLLEPTFMEKKGWV---DREKLLDVSGRGRSKQLQMI--KDYG-----LKYYEKPG 218

Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297
           G  +  + Q+  +   +  Y         +      FV+    N++R++V   E 
Sbjct: 219 GGCLLTDIQVSNKIKNLKEYREMVFEDSVIVKNGRYFVL---PNNARLVVARNEE 270


>gi|315586002|gb|ADU40383.1| tRNA methyltransferase [Helicobacter pylori 35A]
          Length = 350

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|261837468|gb|ACX97234.1| hypothetical protein KHP_0011 [Helicobacter pylori 51]
          Length = 350

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|317181301|dbj|BAJ59085.1| argininosuccinate synthase [Helicobacter pylori F57]
          Length = 350

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|167837826|ref|ZP_02464709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia thailandensis MSMB43]
          Length = 52

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400
           F++ +  V  GQ+ V Y  D      LGGGII    + R+DA        +
Sbjct: 2   FDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRADAAPAGRAPAL 48


>gi|325967954|ref|YP_004244146.1| NAD+ synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707157|gb|ADY00644.1| NAD+ synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 289

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 45/191 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +SGGVDSSV A LL +  G D VIG+ L                  +D+ DA+ V +
Sbjct: 38  IIGLSGGVDSSVTAYLLVKALGKDNVIGLIL-----------PYKTTPPEDIRDAKYVAE 86

Query: 82  TINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +Y  D  +  RNA +   P         T          ++ + L     +    
Sbjct: 87  NLEIKYYYIDIGKI-RNAFVESIPVFDESDKIATGNLL----PRIRMTILYYFANRFNKV 141

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TG               +  +      +    Y               P+GD+ K  
Sbjct: 142 VVGTG--------------DKSELLIGYFTK----YGDGGVD-------ILPIGDLYKTQ 176

Query: 200 VRDLAREMGLD 210
           VR L + +GL 
Sbjct: 177 VRYLGKYLGLP 187


>gi|317178320|dbj|BAJ56108.1| argininosuccinate synthase [Helicobacter pylori F30]
          Length = 350

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|308061316|gb|ADO03204.1| argininosuccinate synthase [Helicobacter pylori Cuz20]
          Length = 350

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|297379235|gb|ADI34122.1| argininosuccinate synthase [Helicobacter pylori v225d]
          Length = 350

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYFEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|225175850|ref|ZP_03729843.1| ExsB family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168774|gb|EEG77575.1| ExsB family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 266

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 69/203 (33%), Gaps = 61/203 (30%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V+VA SGGVDSSV   LL       G  V+ VT                   ++   A R
Sbjct: 21  VLVAFSGGVDSSV---LLAMASGTLGDKVLAVT-----------AASETYLSEEQEVAER 66

Query: 79  VCDTINVSHYVFDYEER----FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +   + V   V + EE     F++               P  C  C   + F  L  V +
Sbjct: 67  LAAKLQVPLQVIETEELAIPAFQD-------------NPPERCYYCKHEL-FGKLTEVAK 112

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G   +A G          D G  R  M    +L                  +R PL +
Sbjct: 113 ANGLQYVADGSNA------DDVGDWRPGMKAAAELG-----------------VRSPLKE 149

Query: 195 --MKKESVRDLAREMGLDIADKS 215
               KE VR LARE+ L+  +K 
Sbjct: 150 AGFTKEDVRRLARELNLENWNKP 172


>gi|254304215|ref|ZP_04971573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324407|gb|EDK89657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 337

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 94/284 (33%), Gaps = 41/284 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  + + ++ +   SGG+DS++   +++  G +VI +               S   G   
Sbjct: 1   MKDSMEKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKN 48

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     + 
Sbjct: 49  EKAESMAKQLGIRLEYIDFKKRHTLVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELL 104

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GA  + +G  +  R    +         + ++  +  S        + L     P  
Sbjct: 105 EEYGASFVISGEVLGQRPMSQNS--------QALEKVKKLSGM-EDLVLRPLSAKLLPP- 154

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG----IALEG-----D 244
              K  V        L   +    Q    ++   ++ +V+  + G    +   G      
Sbjct: 155 --SKAEVMGWVDREKLLDINGRSRQRQ--MELMDFYGLVEYPSPGGGCLLTDPGYSNRLK 210

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
           ++  +G +   H     + + +              V  +K S+
Sbjct: 211 VLEDDGLLKEEH--AWLFKLIKEARFFRFSKARYLFVGRNKESN 252


>gi|146319671|ref|YP_001199383.1| argininosuccinate synthase [Streptococcus suis 05ZYH33]
 gi|145690477|gb|ABP90983.1| argininosuccinate synthase (citrulline-asparate ligase)
           [Streptococcus suis 05ZYH33]
 gi|292559287|gb|ADE32288.1| argininosuccinate synthase [Streptococcus suis GZ1]
          Length = 407

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 16/135 (11%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +++ K     ++++A SGG+D+SV  A LK+D YDVI V + +          G     +
Sbjct: 5   IEMRKFMTKEKLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKNLE 53

Query: 72  DVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDL 129
            ++D      +I  +  +V D +E F    ++P   ++A  E   P V   +R +    L
Sbjct: 54  FIHDK---ALSIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKL 110

Query: 130 LSVTRQLGADVLATG 144
           + +  + GA  +A G
Sbjct: 111 VEMAHKTGATTIAHG 125


>gi|85859756|ref|YP_461958.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase / fibronectin/fibrinogen-binding
           protein [Syntrophus aciditrophicus SB]
 gi|85722847|gb|ABC77790.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase / fibronectin/fibrinogen-binding
           protein [Syntrophus aciditrophicus SB]
          Length = 333

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 36/197 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V  SGG+DS +   +++  G +V+G+T   + +   S RK           AR     
Sbjct: 14  IAV-FSGGLDSIIAVKVIQDQGIEVVGLT---FETPFFSSRK-----------ARDAARK 58

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADVL 141
           I +   V D  E     ++ P    Y  G+   PC+DC+  + K +       +LGAD +
Sbjct: 59  IGLPLKVLDITEEHLKMLMNP---RYGYGKNLNPCIDCHTLMLKIAG--DKMSELGADFI 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG  +  R         ++++     + ++  Y  +      L     P     K   R
Sbjct: 114 FTGEVLGQRPMSQ----GKQML---GVVAKNSGYADYILRP--LSAKLLP---ETKPE-R 160

Query: 202 D--LAREMGLDIADKSD 216
           +  + REM LDI  +  
Sbjct: 161 EGKINREMLLDIQGRGR 177


>gi|194467785|ref|ZP_03073771.1| Argininosuccinate synthase [Lactobacillus reuteri 100-23]
 gi|194452638|gb|EDX41536.1| Argininosuccinate synthase [Lactobacillus reuteri 100-23]
          Length = 410

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +     K                 
Sbjct: 5   KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSV----- 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +  F    ++P   ++A  E   P V   +R +    L++V  Q GA  
Sbjct: 60  -------VIDAKRDFAEQFVLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQYGATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|148244940|ref|YP_001219634.1| hypothetical protein COSY_0804 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326767|dbj|BAF61910.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 348

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 17/227 (7%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-- 74
             K ++ V  +SGG+DS +   ++   G  V G+        +             +   
Sbjct: 2   TNKQIKAVSLISGGLDSLLSTKIILDQGIHVEGINFFTGFCMEGHTNTIRKQKKNGLKRN 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +A  V + + +  ++ D  E +R+ ++ P    +  G+   PC+DC   +          
Sbjct: 62  NALWVAEKLGIKLHIIDVIEEYRDVLLNP---KHGYGKNMNPCLDCKGFM-VKKAKEWMV 117

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQQL 185
           +   D + TG  +  R           I         + RP+  +               
Sbjct: 118 EYEFDFIITGEVVGQRPMSQRKETMPIIQLESGANDLLLRPLCAKHLPVTKAEIENWVDR 177

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
             L    G  +K  +  LA+E G D      +   CF+   +Y D +
Sbjct: 178 EKLLDFSGRTRKPQM-FLAKEYGFDGYATP-AGGCCFLTDKQYSDKL 222


>gi|227544918|ref|ZP_03974967.1| argininosuccinate synthase [Lactobacillus reuteri CF48-3A]
 gi|300910054|ref|ZP_07127514.1| argininosuccinate synthase [Lactobacillus reuteri SD2112]
 gi|227185085|gb|EEI65156.1| argininosuccinate synthase [Lactobacillus reuteri CF48-3A]
 gi|300892702|gb|EFK86062.1| argininosuccinate synthase [Lactobacillus reuteri SD2112]
          Length = 415

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +     K                 
Sbjct: 10  KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSV----- 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +  F    ++P   ++A  E   P V   +R +    L++V  Q GA  
Sbjct: 65  -------VIDAKRDFAEQFVLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQYGATA 117

Query: 141 LATG 144
           +A G
Sbjct: 118 IAHG 121


>gi|148543962|ref|YP_001271332.1| argininosuccinate synthase [Lactobacillus reuteri DSM 20016]
 gi|184153357|ref|YP_001841698.1| argininosuccinate synthase [Lactobacillus reuteri JCM 1112]
 gi|166989392|sp|A5VJH1|ASSY_LACRD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|229889877|sp|B2G6Y6|ASSY_LACRJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|148530996|gb|ABQ82995.1| argininosuccinate synthase [Lactobacillus reuteri DSM 20016]
 gi|183224701|dbj|BAG25218.1| argininosuccinate synthase [Lactobacillus reuteri JCM 1112]
          Length = 410

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +     K                 
Sbjct: 5   KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSV----- 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +  F    ++P   ++A  E   P V   +R +    L++V  Q GA  
Sbjct: 60  -------VIDAKRDFAEQFVLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQYGATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|227364875|ref|ZP_03848921.1| argininosuccinate synthase [Lactobacillus reuteri MM2-3]
 gi|325682500|ref|ZP_08162017.1| argininosuccinate synthase [Lactobacillus reuteri MM4-1A]
 gi|227070079|gb|EEI08456.1| argininosuccinate synthase [Lactobacillus reuteri MM2-3]
 gi|324978339|gb|EGC15289.1| argininosuccinate synthase [Lactobacillus reuteri MM4-1A]
          Length = 415

 Score = 74.8 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A LK  GYDVI   + +   +     K                 
Sbjct: 10  KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSV----- 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +  F    ++P   ++A  E   P V   +R +    L++V  Q GA  
Sbjct: 65  -------VIDAKRDFAEQFVLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQYGATA 117

Query: 141 LATG 144
           +A G
Sbjct: 118 IAHG 121


>gi|78042774|ref|YP_360358.1| NAD+ synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576103|sp|Q3ABX6|NADE_CARHZ RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|77994889|gb|ABB13788.1| NAD+ synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 243

 Score = 74.4 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 45/191 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGGVDS+VVA L+K+            +  +            +D  DAR + + +
Sbjct: 29  LVGLSGGVDSAVVATLIKKA-----------FPEKSLGIIMPCFSNPEDEEDARMIANHL 77

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAG--ETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
           N+ + V + +E ++  V     SS        P      N    ++ + L      L  +
Sbjct: 78  NLKYIVVNLDEPYQALV-----SSLKNATPHEPEKLALANIKPRLRMTTLYYWAANL--N 130

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   R+ L +G             D   D                  P+G++ K  
Sbjct: 131 YLVAGTGNRTELEIG------YFTKWG-DGGVD----------------LLPIGNLTKTE 167

Query: 200 VRDLAREMGLD 210
           V + AR +GL 
Sbjct: 168 VWEFARYLGLP 178


>gi|290581142|ref|YP_003485534.1| argininosuccinate synthase [Streptococcus mutans NN2025]
 gi|254998041|dbj|BAH88642.1| argininosuccinate synthase [Streptococcus mutans NN2025]
          Length = 396

 Score = 74.0 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  Q GA 
Sbjct: 54  A---IESYVLDIKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|24378832|ref|NP_720787.1| argininosuccinate synthase [Streptococcus mutans UA159]
 gi|29336640|sp|Q8CWZ0|ASSY_STRMU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|24376708|gb|AAN58093.1|AE014881_7 argininosuccinate synthase (citrulline-asparate ligase)
           [Streptococcus mutans UA159]
          Length = 396

 Score = 74.0 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  Q GA 
Sbjct: 54  A---IESYVLDIKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|327440413|dbj|BAK16778.1| argininosuccinate synthase [Solibacillus silvestris StLB046]
          Length = 404

 Score = 74.0 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 39/203 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV+A SGG+D+SV    LK  G+DVI V L                 G+D+   R  
Sbjct: 3   NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCL-------------DVGEGKDLEFIRNK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  Y+ D ++ F     +     +   E   P V   +R +    L+ +  +  
Sbjct: 50  ALQVGAVESYMIDAKDEFAEDFALISLQGHTWYEQKYPLVSALSRPLISKKLVEIANETN 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--GD 194
           AD +A G                   C       DQ  F  +        ++  P+    
Sbjct: 110 ADAVAHG-------------------CTGK--GNDQVRFEVSIKALNPDLEVLAPVREWG 148

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
             ++   + A + G+ I    DS
Sbjct: 149 WSRDEEIEYAAKHGVPIPATLDS 171


>gi|308062882|gb|ADO04769.1| argininosuccinate synthase [Helicobacter pylori Sat464]
          Length = 350

 Score = 74.0 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS +   LL   G +V  +   +          G             
Sbjct: 2   KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNI----------GFGGNKDKREYLEN 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I     V D  E+F N V+  F   Y  G+   PC+DC+  + F +      +L A
Sbjct: 52  ATAQIGAKLLVCDIREQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108

Query: 139 DVLATGHYIRSRLYVGDDG--KRRRIMCR 165
           D + +G  +  R          + R + R
Sbjct: 109 DFVLSGEVLGQRPKSQRKEALNQVRKLVR 137


>gi|224476062|ref|YP_002633668.1| argininosuccinate synthase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254807532|sp|B9DIU4|ASSY_STACT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|222420669|emb|CAL27483.1| putative argininosuccinate synthase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 401

 Score = 74.0 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+ +  +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDEVYQKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  Y+ D  E F +  +          E   P V   +R +    L+ +  +  A 
Sbjct: 51  DMGAIECYIIDATEEFSDEYVSYAIKGNLMYENTYPVVSALSRPLISKKLVEIAEKTDAV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|240104187|ref|YP_002960496.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
 gi|239911741|gb|ACS34632.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
          Length = 304

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 41/246 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+V +SGG DS+V A +LK+ GY++  + +      + S++            A++ 
Sbjct: 47  DEKVLVVVSGGKDSAVTAYILKKLGYNIECLHI-NLGIGEYSEKSE--------EYAKKQ 97

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + V  ++          V   F        T  P        K           G D
Sbjct: 98  CEALEVPLHIV--------RVKELFGKGIGEVRTRRPTCSYCGLTKRYIFNKFAYDNGFD 149

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ----LCDLRFPLGDM 195
            +ATGH     L          +M         Q       T  Q    L     PL ++
Sbjct: 150 AVATGH----NLDDEASFIFSNMMHWNTQYLAKQ----GPVTPAQFNGKLVKKVKPLYEV 201

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEG-DIVHLNG 250
            +  V   A   G++        + C   +G    +Y  ++  +       G  I  + G
Sbjct: 202 TEREVVAYALANGIEYM-----MEECPYARGATTLEYKAILNEMEEK--RPGTKINFVKG 254

Query: 251 QILGRH 256
            +  +H
Sbjct: 255 FLRKKH 260


>gi|323340536|ref|ZP_08080791.1| argininosuccinate synthase [Lactobacillus ruminis ATCC 25644]
 gi|323092080|gb|EFZ34697.1| argininosuccinate synthase [Lactobacillus ruminis ATCC 25644]
          Length = 402

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 31/200 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV  A LK  GYDVI   + +   +   + K    A   V     
Sbjct: 4   EKEKVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEEVKQKGLAVGAVES--- 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                     V D ++ F     +P    +A  E   P V   +R +    L+ V ++ G
Sbjct: 61  ---------IVIDAKKEFAEEYCLPALQGHAYYENKYPLVSALSRPLIVKHLVEVAKKYG 111

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G                    +  D  R +        + ++ D    +   ++
Sbjct: 112 ATAIAHG-----------------CTGKGNDQVRFEVGIHALAPEMKIEDPIREVHWSRE 154

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E + D A+E G+ +     S
Sbjct: 155 EEI-DYAKENGIPVPITKKS 173


>gi|254173021|ref|ZP_04879695.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
 gi|214033177|gb|EEB74005.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
          Length = 306

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 27/239 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+V +SGG DS+V A +LK+ GY++  + +      + S++  S         A++ 
Sbjct: 49  DERVLVVVSGGKDSAVTAYILKKLGYNIECLHI-NLGIGEYSEKSES--------YAKKQ 99

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + V  ++          V            T  P        K           G D
Sbjct: 100 CEALGVPLHIV--------RVKELLGKGIGEVRTRRPTCSYCGLTKRYIFNKFAYDNGFD 151

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGH     L          +M         Q     +    +L     PL ++ +  
Sbjct: 152 AVATGH----NLDDEASFIFSNMMHWNTQYLAKQGPVTPSQFNGKLVKKVKPLYEVTERE 207

Query: 200 VRDLAREMGLDI--ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           V   A   G+D    +   +     ++  +  + ++    G      I  + G +  +H
Sbjct: 208 VVAYALANGIDYMMEECPHAVGATTIEYKEILNEMEEKRPGT----KINFVKGFLRKKH 262


>gi|319789732|ref|YP_004151365.1| NAD+ synthetase [Thermovibrio ammonificans HB-1]
 gi|317114234|gb|ADU96724.1| NAD+ synthetase [Thermovibrio ammonificans HB-1]
          Length = 278

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 50/205 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + VV +SGGVDSS+ A L  +     +VIG+++                +     DA+ V
Sbjct: 36  KAVVGLSGGVDSSLAAFLAVKALGNNNVIGISM-----------PYRTSSPSSREDAKLV 84

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQLG 137
              + +  +  D   +          + Y+  +   P    N+    + S L       G
Sbjct: 85  AQVLGIEFHEIDITPQ--------IDAYYSRFQEADPVRKGNKMARERMSILYDFAHWKG 136

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A V+ T                +  +          S                PLGD+ K
Sbjct: 137 ALVIGT--------------SNKSELLIGYSTRWGDS-----------AHDVNPLGDLYK 171

Query: 198 ESVRDLAREMGLD--IADKSDSQDI 220
             V  LA   G+   I  K  S D+
Sbjct: 172 TQVWQLAEFTGVPERIVKKKPSADL 196


>gi|118602851|ref|YP_904066.1| hypothetical protein Rmag_0880 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567790|gb|ABL02595.1| conserved hypothetical protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 360

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 17/226 (7%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--D 75
            K ++ +  +SGG+DS +   L+   G  + G+        +             +   +
Sbjct: 15  NKKIKAISLISGGLDSLLSTKLMLDQGIYIEGINFFTGFCVEGHTHAIRKQKKDKLKRNN 74

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V + + +  ++ D  E +R+ ++ P    +  G+   PC+DC   +          +
Sbjct: 75  ALWVAEQLGIKLHIIDVIEEYRDVLLNP---KHGYGKNMNPCLDCKSFM-VRKAKEWILE 130

Query: 136 LGADVLATGHYIRSRLY---------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              D + TG  +  R           V  +     ++ RP+  +   +            
Sbjct: 131 YEFDFIITGEVMGQRPMSQRKEAMPIVQTESGANDLLLRPLCAKHLPATKAELEGWVDRE 190

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
            L    G  +K  +  LA++        + +   CF+   +Y D +
Sbjct: 191 KLLDFSGRTRKPQI-ALAKQYRF-NDYTTPAGGCCFLTDKQYSDKL 234


>gi|27447463|gb|AAN07906.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptomyces noursei ATCC 11455]
          Length = 75

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 333 SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392
           +     V  +   + + V F +   GVA GQA V Y       RV+G   I+ ++R+  V
Sbjct: 19  TAGETEVTAEVVGEELRVSFTEPVRGVAPGQAVVLYDG----TRVVGSATIATTRRAAPV 74

Query: 393 E 393
            
Sbjct: 75  A 75


>gi|257468460|ref|ZP_05632554.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062723|ref|ZP_07927208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688399|gb|EFS25234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 333

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS++   ++K  G +V+ +               S   G     A +
Sbjct: 3   KKIKALALFSGGLDSALAVKVVKDQGVEVVAL------------NFVSHFFGGKNEKAEK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + + +     D++ R    +  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 51  MAEQLGIKLEYIDFKSRHTEILKNPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGA 106

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 107 QFVISGEVLGQRPMSQN 123


>gi|167043164|gb|ABZ07873.1| putative domain of unknown function (DUF814) [uncultured marine
           crenarchaeote HF4000_ANIW141J13]
          Length = 352

 Score = 73.3 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 32/244 (13%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGG+DS++    +++ G++V  V ++   +       G  C  +    A    D + V
Sbjct: 28  LLSGGLDSTLAVKTMQKQGFEVSAVAIK---TPFCDFDCGRGCGFEIREKA----DNLGV 80

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                   + +   +  P    Y  G    PC+DC R + F        ++GA+ + +G 
Sbjct: 81  DLKTVYLGDEYVEMLKHP---KYGFGSGMNPCIDC-RAMMFEAGKKHMEEIGAEFIISGE 136

Query: 146 YIRSRLY-------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +  R                G +GK  R +   +    D         ++ L  +R   
Sbjct: 137 VLGQRPMSQFAPALKKIEKLSGLEGKIVRPLSAALLPPTDPE-KNGLIKRKDLGMIR--- 192

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
           G  +KE +R +A+E G++  D  ++   C +    +    K +   I     +  ++   
Sbjct: 193 GRSRKEQLR-MAKEFGIE--DPPNAGGGCLLTDPAFSLRAKDLFKHIETP-TMNDIDLLK 248

Query: 253 LGRH 256
           +GRH
Sbjct: 249 IGRH 252


>gi|268680598|ref|YP_003305029.1| thiamine biosynthesis protein:ExsB [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618629|gb|ACZ12994.1| thiamine biosynthesis protein:ExsB [Sulfurospirillum deleyianum DSM
           6946]
          Length = 327

 Score = 73.3 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 21/139 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V  SGG+DS +   +L + G +VI + + +          G            R  
Sbjct: 1   MKALVLFSGGLDSMLAVNVLVQQGIEVIALHVNI----------GFGIKDDHYETLERRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL---- 136
                   V D  + +   ++  F+  Y  G+   PC+DC+       + SV + L    
Sbjct: 51  KLAGACLEVIDVRDEYLQKIL--FSPKYGYGKQFNPCIDCH-----GFMFSVAKSLLPRY 103

Query: 137 GADVLATGHYIRSRLYVGD 155
           GA  +ATG  I  R    +
Sbjct: 104 GASFIATGEVIAQRPMSQN 122


>gi|315194493|gb|EFU24885.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 401

 Score = 73.3 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L         + KG     +   D R V  
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL------DVGEGKGLDIVYKKALDMRAV-- 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 ++ D  + F +  +          E   P V   +R +    L+ +  +  +  
Sbjct: 56  ----ECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVG 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|212224868|ref|YP_002308104.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009825|gb|ACJ17207.1| ATPase [Thermococcus onnurineus NA1]
          Length = 305

 Score = 73.3 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 33/241 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+V +SGG DS+V A +LK+ GYD+  + +      + S++            A+R 
Sbjct: 49  DERVLVVVSGGKDSAVTAYVLKKLGYDIECLHI-NLGIGEYSEKSE--------EYAKRQ 99

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + V  ++          V            T  P        K           G D
Sbjct: 100 CEALGVPLHIV--------RVKELLGHGIGEVRTRRPTCSYCGLTKRYIFNKFAYDNGFD 151

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ--LCDLRFPLGDMKK 197
            +ATGH +        D +   I    M             T  +        PL ++ +
Sbjct: 152 AVATGHNL--------DDEASFIFSNLMHWNTQYLAKQGPLTPGEGKFVKKIKPLYELTE 203

Query: 198 ESVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
             V   A   G+   I +   ++    ++  +  + ++    G      I  + G +  +
Sbjct: 204 REVVAYALANGIEYHIEECPHARGATTLEFKEVLNEMEEKRPGT----KINFVKGYLRKK 259

Query: 256 H 256
           H
Sbjct: 260 H 260


>gi|188587455|ref|YP_001919000.1| ExsB family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352142|gb|ACB86412.1| ExsB family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 278

 Score = 73.3 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 49/226 (21%)

Query: 24  VVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVA SGGVDS+    LLK     +V      L +   A          +++  A+ + + 
Sbjct: 31  VVAFSGGVDST---LLLKVAQ--EV------LSDQVLAVTSTSETIPERELDRAKELAED 79

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I   H        +   +             P  C  C + + FS L  + +  G   + 
Sbjct: 80  IGAKHKTI-----YTEEI----LQEEFRKNPPNRCYYCKQEL-FSHLWEIAKSYGFSYVL 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G          DDG   R         + QS                PL +    KE V
Sbjct: 130 DG-------SNYDDGGDFRPGLEAAAKLQVQS----------------PLKETGFTKEDV 166

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           R L++E+GL   +K      C   +  Y + + R       +G+ V
Sbjct: 167 RQLSKELGLPTWNKP--AMACLSSRFPYGEELTREKIDQVEKGEDV 210


>gi|257126527|ref|YP_003164641.1| NAD+ synthetase [Leptotrichia buccalis C-1013-b]
 gi|257050466|gb|ACV39650.1| NAD+ synthetase [Leptotrichia buccalis C-1013-b]
          Length = 245

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 55/207 (26%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            ++N K+ + VV +SGG DSSVVAAL     G + VIGV +           KG+     
Sbjct: 16  FEENGKNCKAVVGISGGTDSSVVAALCVAALGRENVIGVLM----------PKGT---QH 62

Query: 72  DVYDARRVCDTINVSHYVFDYEER--------FRNAVIVPFASSYAAGETPLPCVDCNRT 123
           D+  ++++ + + + HY  + E+         F    + P    + A +T  P       
Sbjct: 63  DIDFSKKLVEFLQIKHYEINVEKPVNDLKELIFSQIGVDP--DEFDAYKTNQP-----AR 115

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           ++ + L       G   +  G    +     D                   Y  ++T   
Sbjct: 116 IRMAVLY------GISAVIGGRVANTCNLSED-------------------YVGYSTKFG 150

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
                  P+ D  K  VR L  E+GL 
Sbjct: 151 DAAGDFSPISDFTKTEVRKLGAELGLP 177


>gi|78043673|ref|YP_358888.1| hypothetical protein CHY_0016 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995788|gb|ABB14687.1| conserved hypothetical protein TIGR00268 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 267

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 88/246 (35%), Gaps = 51/246 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M   + T+L S+  +       VVVA SGGVDSS    LLK    DV+G      +   A
Sbjct: 1   MAQQKLTKLTSILTEMES----VVVAFSGGVDSS---FLLKVA-RDVLG------DKVVA 46

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +          ++ +A  +   + V      Y + F +     F +       P  C  C
Sbjct: 47  AVGISDTYKPDELLEAENIAKMLEVKLLKV-YTDEFSDP---NFVN-----NPPDRCYYC 97

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            + + F+ L+ +  QL  + +  G  +       DD    R   R           +   
Sbjct: 98  KKNL-FTKLIELKEQLNFNYVVDGANL-------DDNNDYRPGHRA----------IAEL 139

Query: 181 TQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
                  +R PL      KE +R  AREMGL   +K    + C   +  Y   + + +  
Sbjct: 140 G------VRSPLREAGFTKEEIRRFAREMGLPNWNKP--AEACLASRFPYHTKITKESLR 191

Query: 239 IALEGD 244
               G+
Sbjct: 192 KIYSGE 197


>gi|145591249|ref|YP_001153251.1| NAD+ synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283017|gb|ABP50599.1| NH(3)-dependent NAD(+) synthetase [Pyrobaculum arsenaticum DSM
           13514]
          Length = 281

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 61/195 (31%), Gaps = 53/195 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGGVDS    AL     G + VI + L                  QDV DA RV  
Sbjct: 37  VVGLSGGVDSCTTLALTAEALGPERVIALIL-----------PSKATPPQDVEDAIRVAR 85

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYA----AGETPLPCVDCN--RTVKFSDLLSVTRQ 135
              V + V D         I P  ++Y       +        N    ++ S L     +
Sbjct: 86  QFGVRYEVID---------ITPILNAYKTTMSEYDDKDLVARGNLTARIRMSVLYYYANK 136

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
               V+ TG      L                D   D                  P+GD+
Sbjct: 137 RNMLVIGTGDKSELMLGYFTKHG---------DGGVD----------------ILPIGDL 171

Query: 196 KKESVRDLAREMGLD 210
            K  VR LAR MGL 
Sbjct: 172 YKSQVRALARRMGLP 186


>gi|254457550|ref|ZP_05070978.1| thiamine biosynthesis protein:ExsB [Campylobacterales bacterium GD
           1]
 gi|207086342|gb|EDZ63626.1| thiamine biosynthesis protein:ExsB [Campylobacterales bacterium GD
           1]
          Length = 325

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++   L+   G DV+ V          +   G       +   + +C
Sbjct: 1   MKAIALFSGGLDSTLAMKLIIDQGIDVLAV----------NISTGFGSTKDRLEHMQNMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +     + D +  F   V+  F   +  G+   PC+DC+  + F+    +    GA  
Sbjct: 51  DQVGAELKIIDIQSEFLQDVL--FDPKHGYGKNFNPCIDCHAKM-FAVAKRIMEAEGASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           L +G  +  R    +    + ++       
Sbjct: 108 LVSGEVMGQRPMSQNKEALQTVLNESNCEG 137


>gi|78776227|ref|YP_392542.1| thiamine biosynthesis protein:ExsB [Sulfurimonas denitrificans DSM
           1251]
 gi|78496767|gb|ABB43307.1| Thiamine biosynthesis protein:ExsB [Sulfurimonas denitrificans DSM
           1251]
          Length = 326

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS++   L+   G +V+ V          +   G       +   + +C
Sbjct: 1   MKAIALFSGGLDSTLALKLIIDQGIEVLAV----------NINTGFGSTKDRLEHMQNMC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D E  F   V+  F   +  G+   PC+DC+  + F+    V    GA  
Sbjct: 51  AQVGAELKIIDIESEFLQDVL--FDPKHGYGKNFNPCIDCHAKM-FAVAKRVMESEGASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           L +G  +  R    +    + ++       
Sbjct: 108 LISGEVLGQRPMSQNREAMQTVLNESNCDG 137


>gi|157693335|ref|YP_001487797.1| argininosuccinate synthase [Bacillus pumilus SAFR-032]
 gi|194017201|ref|ZP_03055813.1| argininosuccinate synthase [Bacillus pumilus ATCC 7061]
 gi|166989388|sp|A8FG70|ASSY_BACP2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157682093|gb|ABV63237.1| argininosuccinate synthase [Bacillus pumilus SAFR-032]
 gi|194011069|gb|EDW20639.1| argininosuccinate synthase [Bacillus pumilus ATCC 7061]
          Length = 403

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +VV+A SGG+D+SV    L+  GY+V+   L                 G+D+   ++
Sbjct: 3   QNKKVVLAYSGGLDTSVAVKWLQEQGYEVVACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  V  Y+ D +E F     +    ++   E   P V   +R +    L+ V  + 
Sbjct: 50  KALQVGAVQSYMIDAKEEFAEEFALTALQAHTMYEGKYPLVSALSRPLIAKKLVEVAEKE 109

Query: 137 GADVLATG 144
            A  +A G
Sbjct: 110 NAVAVAHG 117


>gi|304321760|ref|YP_003855403.1| argininosuccinate synthase [Parvularcula bermudensis HTCC2503]
 gi|303300662|gb|ADM10261.1| argininosuccinate synthase [Parvularcula bermudensis HTCC2503]
          Length = 402

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S     LK+ GY+VI                G   A     +     
Sbjct: 3   QKVVLAFSGGLDTSYCVLALKKAGYEVITYF---------VDTAGPGSAEASPEEVAARA 53

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFAS--SYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             +  V H+  +  +R  + ++VP      +  G    P +  +R +     + + + +G
Sbjct: 54  KELGAVDHHNIEASQRLWDGIVVPLIQAGEWRQGR--YPLLCADRYLIVEAGIELAKSVG 111

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 112 AGAIAHG 118


>gi|77409194|ref|ZP_00785905.1| argininosuccinate synthase [Streptococcus agalactiae COH1]
 gi|77172202|gb|EAO75360.1| argininosuccinate synthase [Streptococcus agalactiae COH1]
          Length = 396

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G       ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKDLDFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|76788242|ref|YP_328849.1| argininosuccinate synthase [Streptococcus agalactiae A909]
 gi|77406211|ref|ZP_00783280.1| argininosuccinate synthase [Streptococcus agalactiae H36B]
 gi|119361331|sp|Q3K3Q4|ASSY_STRA1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|76563299|gb|ABA45883.1| argininosuccinate synthase [Streptococcus agalactiae A909]
 gi|77175161|gb|EAO77961.1| argininosuccinate synthase [Streptococcus agalactiae H36B]
          Length = 396

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G       ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKDLDFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|22536310|ref|NP_687161.1| argininosuccinate synthase [Streptococcus agalactiae 2603V/R]
 gi|77412174|ref|ZP_00788496.1| argininosuccinate synthase [Streptococcus agalactiae CJB111]
 gi|30172835|sp|Q8E272|ASSY_STRA5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|22533133|gb|AAM99033.1|AE014197_1 argininosuccinate synthase [Streptococcus agalactiae 2603V/R]
 gi|77161792|gb|EAO72781.1| argininosuccinate synthase [Streptococcus agalactiae CJB111]
          Length = 396

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G       ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKDLDFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|25010198|ref|NP_734593.1| argininosuccinate synthase [Streptococcus agalactiae NEM316]
 gi|77414560|ref|ZP_00790704.1| argininosuccinate synthase [Streptococcus agalactiae 515]
 gi|30172837|sp|Q8E7N1|ASSY_STRA3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|23094549|emb|CAD45768.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159401|gb|EAO70568.1| argininosuccinate synthase [Streptococcus agalactiae 515]
          Length = 396

 Score = 72.9 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G       ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKDLDFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|126660833|ref|ZP_01731927.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Cyanothece sp. CCY0110]
 gi|126617884|gb|EAZ88659.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Cyanothece sp. CCY0110]
          Length = 542

 Score = 72.9 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 25/202 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++    +D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      D
Sbjct: 231 EIRAKVRDKRVLLALSGGVDSSTLAFLLHQA----IGDNLTCMFIDQGFMRKGEPERLMD 286

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           ++D        ++     +  +RF      VI P       G                  
Sbjct: 287 IFD-----KQFHIPVEYVNARDRFLKQLEGVIDPEKKRRLIGHEF-----------IQVF 330

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              +++LG  D LA G      +   D     +   R     +   + +    +     L
Sbjct: 331 EEESKRLGPFDYLAQGTLYPDVIESADTNIDPKTGERVAVKIKSH-HNVGGLPKDLRFKL 389

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR + R +GL 
Sbjct: 390 VEPLRKLFKDEVRKVGRSIGLP 411


>gi|323702070|ref|ZP_08113738.1| NAD+ synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532952|gb|EGB22823.1| NAD+ synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 243

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 40/189 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSC-CAGQDVYDARRVCD 81
           VV +SGG+DS+VVAAL KR   + V+GV +              C    +D  DA+ V +
Sbjct: 26  VVGLSGGIDSAVVAALCKRAFPENVLGVIM-------------PCFSNPEDAKDAKLVAE 72

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T+ V +      + F   V       Y      +   +    ++   L     +    V+
Sbjct: 73  TLGVPYEEVVLNDPFAWFVRRFTGQDYDVRSNDMAIANIKPRLRMITLYYFAAKNNYLVV 132

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG+   + +                D   D                  P+ ++ K  VR
Sbjct: 133 GTGNKAETVVGYFTKYG---------DGGVD----------------ILPIANLVKSQVR 167

Query: 202 DLAREMGLD 210
           +LA+E+G+ 
Sbjct: 168 ELAQELGVP 176


>gi|322374153|ref|ZP_08048687.1| argininosuccinate synthase [Streptococcus sp. C150]
 gi|321277119|gb|EFX54190.1| argininosuccinate synthase [Streptococcus sp. C150]
          Length = 399

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G     + ++D A  V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLEFIHDKALTVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|306832311|ref|ZP_07465465.1| argininosuccinate synthase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425750|gb|EFM28868.1| argininosuccinate synthase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 416

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKAS 61
           V + T++    +  + +  +V++A SGG+D+SV    L+K   YDV+ V + +       
Sbjct: 8   VDKNTKIRKESIPMSKE--KVILAYSGGLDTSVAITWLMKD--YDVVAVCMDV------- 56

Query: 62  KRKGSCCAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              G       ++D A +V     V  YV D ++ F    ++P   ++A  E   P V  
Sbjct: 57  ---GEGKDLDFIHDKALKVGA---VESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSA 110

Query: 121 -NRTVKFSDLLSVTRQLGADVLATG 144
            +R V    L+ +  + GA  +A G
Sbjct: 111 LSRPVISKKLVEIAHKTGATTIAHG 135


>gi|18976645|ref|NP_578002.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892216|gb|AAL80397.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 283

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 31/225 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD R++VA+SGG DS+V A +LK+ GY +  + L L          G      ++  A++
Sbjct: 28  KDERILVAVSGGKDSAVTAYVLKKLGYKIECLHLNL--------GIGEYSEKSEI-YAKK 78

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+ I     +          V            T  P        K   +       G 
Sbjct: 79  QCEFIGAPLNII--------RVKELLGYGIGEVRTSRPTCSYCGLTKRYIMNKFAYDNGF 130

Query: 139 DVLATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D +ATGH +        +         + +   L   +  F+             PL ++
Sbjct: 131 DAVATGHNLDDEASFLMNNLLHWNTEYLAKGGPLLPGEGKFV---------KKIKPLYEL 181

Query: 196 KKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAG 238
            +  V   A  +GL+  + +   ++    +   +  + ++    G
Sbjct: 182 TEREVVAYAIAVGLEYIVEECPYARGATTLDMKEVLNELEEKRPG 226


>gi|291277103|ref|YP_003516875.1| putative tRNA methyltransferase [Helicobacter mustelae 12198]
 gi|290964297|emb|CBG40147.1| putative tRNA methyltransferase [Helicobacter mustelae 12198]
          Length = 346

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +   SGG+DS +   LLK    +VI +   +          G+    + + +A +    I
Sbjct: 1   MALFSGGLDSLISMKLLKDQNIEVIALHFNI-------GFGGNYDKKEYLLNATK---QI 50

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V   + D  ++F + ++  FA  Y  G+   PC+DC+  + F        +LGAD + +
Sbjct: 51  GVELLICDIRQQFFDNIL--FAPKYGYGKYFNPCIDCHANM-FIQAFDKLLELGADFIIS 107

Query: 144 GHYIRSRLYVG 154
           G  +  R    
Sbjct: 108 GEVLGQRPKSQ 118


>gi|76799640|ref|ZP_00781753.1| Argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus agalactiae 18RS21]
 gi|76585007|gb|EAO61652.1| Argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus agalactiae 18RS21]
          Length = 226

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G       ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKDLDFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|55737770|gb|AAV61412.1| argininosuccinate synthase [Streptococcus thermophilus LMG 18311]
 gi|55739688|gb|AAV63329.1| argininosuccinate synthase [Streptococcus thermophilus CNRZ1066]
          Length = 415

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 16/132 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + N    +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++
Sbjct: 14  ENNMSKEKVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIH 62

Query: 75  D-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
           D A  V     V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +
Sbjct: 63  DKALTVGA---VESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEI 119

Query: 133 TRQLGADVLATG 144
             + GA  +A G
Sbjct: 120 AHKTGATTIAHG 131


>gi|306834436|ref|ZP_07467550.1| argininosuccinate synthase [Streptococcus bovis ATCC 700338]
 gi|325979276|ref|YP_004288992.1| argininosuccinate synthase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304423422|gb|EFM26574.1| argininosuccinate synthase [Streptococcus bovis ATCC 700338]
 gi|325179204|emb|CBZ49248.1| argG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 416

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKAS 61
           V + T++    +  + +  +V++A SGG+D+SV    L+K   YDV+ V + +       
Sbjct: 8   VDKNTKIRKESIPMSKE--KVILAYSGGLDTSVAITWLMKD--YDVVAVCMDV------- 56

Query: 62  KRKGSCCAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              G       ++D A +V     V  YV D ++ F    ++P   ++A  E   P V  
Sbjct: 57  ---GEGKDLDFIHDKALKVGA---VESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSA 110

Query: 121 -NRTVKFSDLLSVTRQLGADVLATG 144
            +R V    L+ +  + GA  +A G
Sbjct: 111 LSRPVISKKLVEIAHKTGATTIAHG 135


>gi|319956181|ref|YP_004167444.1| gmp synthase (glutamine-hydrolyzing) [Nitratifractor salsuginis DSM
           16511]
 gi|319418585|gb|ADV45695.1| GMP synthase (glutamine-hydrolyzing) [Nitratifractor salsuginis DSM
           16511]
          Length = 514

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D +V+  +SGGVDSSVVAALL    G  +I V                     
Sbjct: 210 EIRKQVGDKKVLCGVSGGVDSSVVAALLHEAIGDQLIAVF-----------VDTGLLRKN 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSD 128
           +    + +   + +     D  E+F + +             GET +     +   K   
Sbjct: 259 EAQQVQDMFKQLGIDLITVDASEKFLSRLKGVTDPERKRKIIGETFIEVF--DEEAK--- 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 +     LA G  + + +      K      +           +    +    +L
Sbjct: 314 --KHADE--VSFLAQG-TLYTDVIESVSVKGPSKTIKSHHN-------VGGLPEWMTFEL 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+GL 
Sbjct: 362 VEPLREIFKDEVRKLGLELGLP 383


>gi|34558197|ref|NP_908012.1| tRNA methyltransferase [Wolinella succinogenes DSM 1740]
 gi|34483916|emb|CAE10912.1| TRNA METHYLTRANSFERASE [Wolinella succinogenes]
          Length = 333

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L++  G +V+ +   +          G       +   +   
Sbjct: 1   MKALALFSGGLDSLLSMKLIQEMGIEVVALHFNI----------GFGANRDKLEYLQNAT 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I V   V D +E+F N V+  F   +  G+   PC+DC+  + F   L +    GA  
Sbjct: 51  AQIGVELRVLDIQEQFFNEVL--FNPVHGYGKYFNPCIDCHANM-FRHALRLLEGEGASF 107

Query: 141 LATGHYIRSRLYVG 154
           + +G  I  R    
Sbjct: 108 IISGEVIGQRPKSQ 121


>gi|146321866|ref|YP_001201577.1| argininosuccinate synthase [Streptococcus suis 98HAH33]
 gi|253752668|ref|YP_003025809.1| argininosuccinate synthase [Streptococcus suis SC84]
 gi|253754494|ref|YP_003027635.1| argininosuccinate synthase [Streptococcus suis P1/7]
 gi|253756427|ref|YP_003029567.1| argininosuccinate synthase [Streptococcus suis BM407]
 gi|166221024|sp|A4W488|ASSY_STRS2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|172045627|sp|A4VXZ4|ASSY_STRSY RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145692672|gb|ABP93177.1| argininosuccinate synthase (citrulline-asparate ligase)
           [Streptococcus suis 98HAH33]
 gi|251816957|emb|CAZ52606.1| argininosuccinate synthase [Streptococcus suis SC84]
 gi|251818891|emb|CAZ56734.1| argininosuccinate synthase [Streptococcus suis BM407]
 gi|251820740|emb|CAR47502.1| argininosuccinate synthase [Streptococcus suis P1/7]
 gi|319759085|gb|ADV71027.1| argininosuccinate synthase [Streptococcus suis JS14]
          Length = 397

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G     + ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKNLEFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           +I  +  +V D +E F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  SIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|217968149|ref|YP_002353655.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337248|gb|ACK43041.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 268

 Score = 72.5 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 54/230 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +VVVA SGGVDS+    LLK      G +V+ VTL                  +++ +A
Sbjct: 16  KKVVVAYSGGVDST---FLLKVAKDTLGDNVLAVTL-----------ISPIFPEREIKEA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R+ + + V H +   +E  ++     F         P  C  C +   F  ++ V ++ 
Sbjct: 62  KRIAEELGVRHIILKNDELLKH---EEFIK-----NPPERCYICKKY-NFQKIIEVAKEN 112

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
             D +  G  +                    D  +D  Y       ++L  +  PL ++ 
Sbjct: 113 NIDCVLDGSNV--------------------DDLKD--YRPGKMALKELG-ILSPLLELG 149

Query: 196 -KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
             KE +R L+RE  L  ++K      C   +  Y + ++        EG+
Sbjct: 150 FSKEEIRRLSREFNLPTSEKPSL--ACLATRIPYGERIEIERLKRIEEGE 197


>gi|256844917|ref|ZP_05550375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_36A2]
 gi|256718476|gb|EEU32031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_36A2]
          Length = 333

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIKLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGA 105

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 106 SFVISGEVLGQRPMSQN 122


>gi|237741595|ref|ZP_04572076.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|294785797|ref|ZP_06751085.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_27]
 gi|229429243|gb|EEO39455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|294487511|gb|EFG34873.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_27]
          Length = 333

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIKLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGA 105

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 106 SFVISGEVLGQRPMSQN 122


>gi|312865679|ref|ZP_07725903.1| argininosuccinate synthase [Streptococcus downei F0415]
 gi|311098800|gb|EFQ57020.1| argininosuccinate synthase [Streptococcus downei F0415]
          Length = 396

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G     + ++D A  V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLEFIHDKALTVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA 
Sbjct: 54  A---IESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVIAKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|91773753|ref|YP_566445.1| NAD synthetase [Methanococcoides burtonii DSM 6242]
 gi|121686679|sp|Q12V31|NADE_METBU RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|91712768|gb|ABE52695.1| NH3-dependent NAD+ synthetase [Methanococcoides burtonii DSM 6242]
          Length = 263

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 59/198 (29%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++VA L     G + V+G+ +      +AS  K       ++ DA +V +
Sbjct: 27  VVGISGGIDSALVAYLSVEALGAENVLGIHM-----PEASTPK------SEIEDASKVAE 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC---------NRTVKFSDLLSV 132
            + +   V +         I      Y    T +P +D             ++ S L   
Sbjct: 76  ALGIDFKVIN---------ITNVLEVY---RTAMPDIDGASAHVDGNLKARIRMSMLYYY 123

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G  V+ TG+     L                       Y       +       P+
Sbjct: 124 ANMFGRVVMGTGNKSEILLGYFTK------------------YGDGGVDIE-------PI 158

Query: 193 GDMKKESVRDLAREMGLD 210
           GD+ K  VR++++ +G+ 
Sbjct: 159 GDLYKTEVREMSKMLGVP 176


>gi|11499151|ref|NP_070385.1| hypothetical protein AF1556 [Archaeoglobus fulgidus DSM 4304]
 gi|2649005|gb|AAB89691.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 274

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 50/198 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGGVDSS +AA+    G +V+ VT              S    +++ +A+R+ +
Sbjct: 28  KVLIAFSGGVDSSTLAAVCSNAGVEVLAVT-----------VLSSVSPRREMEEAKRIAE 76

Query: 82  TINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + V H     D  +                      C  C R V  S L+   ++ G +
Sbjct: 77  ELGVRHEFLKIDLMDEDFRR------------NDENRCYYCKRRV-LSALVEEAKKRGIE 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
           V+  G           D    R   R +               ++L  +  P     + K
Sbjct: 124 VVLEGTNAS-------DLSDHRPGYRAV---------------RELDGVNSPWVEFGITK 161

Query: 198 ESVRDLAREMGLDIADKS 215
           E +R++AR MG    DK 
Sbjct: 162 EEIREIARSMGYSFHDKP 179


>gi|241895795|ref|ZP_04783091.1| argininosuccinate synthase [Weissella paramesenteroides ATCC 33313]
 gi|241870838|gb|EER74589.1| argininosuccinate synthase [Weissella paramesenteroides ATCC 33313]
          Length = 407

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 35/199 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV  A LK  GYDVI   + +   +   K +        +        
Sbjct: 5   KVVLAYSGGLDTSVEIAWLKNAGYDVIACCIDVGEEKDLVKIQEKGKQVGAIESV----- 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D ++ F    ++    ++A  E   P +   +R +    L+ V +Q GA  
Sbjct: 60  -------VIDAQQEFAEEYVLVALQAHAYYEGKYPLISALSRPLIAKKLVEVAKQYGATA 112

Query: 141 LATGHYIRSRLYVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +A G   +    V  + +        +  D  RDQ           +             
Sbjct: 113 IAHGCTGKGNDQVRFETEIHALAPEMKIEDPIRDQ----------HMSREM--------- 153

Query: 199 SVRDLAREMGLDIADKSDS 217
            +   A+E G+ +    +S
Sbjct: 154 EI-AYAKENGIPVPITKES 171


>gi|309364979|emb|CAP23621.2| hypothetical protein CBG_03001 [Caenorhabditis briggsae AF16]
          Length = 808

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 35/205 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-D 75
           D +V+V +SGGVDS+V AALL R    G  V  V +                  + +  D
Sbjct: 337 DKKVLVMVSGGVDSAVCAALLNRALGPG-RVTAVHIDN-------------GFMRHLESD 382

Query: 76  ARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPC----VDCNRTVKFSDL 129
           A  +    +++  + +DY   FR++          A  E   P     +  N  ++  DL
Sbjct: 383 AVEMSLKALDLPVHRYDYGTTFRSS-SEHMLPEEKALDEIDDPELKRKIIGNTFIRVKDL 441

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQQL 185
           +    +L  +     +++       D  +    +     D  +   + +Y +    +   
Sbjct: 442 I--MNELKINH--NDYFLAQGTLRPDLIESASELASGHADTIKTHHNDTYLVRELRKA-- 495

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VR L +++GL 
Sbjct: 496 GKVIEPLKDFHKDEVRVLGKDLGLP 520


>gi|268532154|ref|XP_002631205.1| Hypothetical protein CBG03001 [Caenorhabditis briggsae]
          Length = 741

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 35/205 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-D 75
           D +V+V +SGGVDS+V AALL R    G  V  V +                  + +  D
Sbjct: 270 DKKVLVMVSGGVDSAVCAALLNRALGPG-RVTAVHIDN-------------GFMRHLESD 315

Query: 76  ARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPC----VDCNRTVKFSDL 129
           A  +    +++  + +DY   FR++          A  E   P     +  N  ++  DL
Sbjct: 316 AVEMSLKALDLPVHRYDYGTTFRSS-SEHMLPEEKALDEIDDPELKRKIIGNTFIRVKDL 374

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQQL 185
           +    +L  +     +++       D  +    +     D  +   + +Y +    +   
Sbjct: 375 I--MNELKINH--NDYFLAQGTLRPDLIESASELASGHADTIKTHHNDTYLVRELRKA-- 428

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VR L +++GL 
Sbjct: 429 GKVIEPLKDFHKDEVRVLGKDLGLP 453


>gi|268611361|ref|ZP_06145088.1| hypothetical protein RflaF_17909 [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 20/141 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ KN  + RV++ +SGG DS      LK+ G DV  +                 C+   
Sbjct: 14  EIIKNSPNPRVIMMLSGGKDSIAALCFLKKLGLDVTAIHF-----------IHKWCSDIP 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             +A+R+C  +++   ++D+   F ++      S +  G    PC  C + + +  L+  
Sbjct: 63  TNEAKRICQQLDIPLKIYDFTNEFYDS-----ISGFTDGR---PCALCKKNM-YQILIGY 113

Query: 133 TRQLGADVLATGHYIRSRLYV 153
             +     L  G     R  +
Sbjct: 114 LNENDYGWLCIGDTSNDRTTI 134


>gi|156938178|ref|YP_001435974.1| NH(3)-dependent NAD(+) synthetase [Ignicoccus hospitalis KIN4/I]
 gi|156567162|gb|ABU82567.1| NH(3)-dependent NAD(+) synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 275

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 71/208 (34%), Gaps = 55/208 (26%)

Query: 19  KDMRVVV-AMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  RV V  +SGGVDS+V AALL    G + V  + L             +    +DV D
Sbjct: 27  RTGRVAVIGLSGGVDSAVTAALLSEALGPERVRALIL-----------PSASTPEKDVED 75

Query: 76  ARRVCDTINVS-HYVFDYEERFRNAVIVPFA---SSYAAGETPLPCVDCNRTVKFSDLLS 131
           A+RV   + +    V D E   R                G T          ++ + L +
Sbjct: 76  AKRVARLLGIEDVRVIDVEPALRA--FDDLLKVDDRVVRGNTLA-------RIRMTILYA 126

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  + G               VG   K   ++            +             FP
Sbjct: 127 VAHKDGI-------------VVGTGDKSEFLL-----------GYFTKCGDGCAD--VFP 160

Query: 192 LGDMKKESVRDLAREMGLD--IADKSDS 217
           +GD+ K  VR LA  MGL   +A K  S
Sbjct: 161 IGDLYKTWVRKLALHMGLPEDVALKPSS 188


>gi|108805668|ref|YP_645605.1| argininosuccinate synthase [Rubrobacter xylanophilus DSM 9941]
 gi|119361318|sp|Q1AS35|ASSY_RUBXD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|108766911|gb|ABG05793.1| argininosuccinate synthase [Rubrobacter xylanophilus DSM 9941]
          Length = 409

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 65/203 (32%), Gaps = 39/203 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV     +  G +   + L L               G+   D R  
Sbjct: 4   GKKVVLAYSGGLDTSVCLKWFEEQGAEPYALYLDL-------------GQGEPAEDVREK 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              I     +V+D  E F    + P   + A      P      R +    L+   R++G
Sbjct: 51  ALRIGAREVFVWDAREEFARDYVAPAIKANALYGGRYPLFTALGRPLIAKKLVEAARRVG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PL--GD 194
           A  +A G                           DQ  F   T           P+   +
Sbjct: 111 ATHIAHG---------------------STGKGNDQVRFDVTTGSLAPDLTVVAPVRDWN 149

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
           M +    + AR+ G+ +    +S
Sbjct: 150 MNRPEEIEYARKHGIPVPVTKES 172


>gi|289764880|ref|ZP_06524258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289716435|gb|EFD80447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 333

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 3   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 51  MAKQLGIKLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEKYGA 106

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 107 SFVISGEVLGQRPMSQN 123


>gi|260494762|ref|ZP_05814892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_33]
 gi|260197924|gb|EEW95441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_33]
          Length = 333

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIKLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEKYGA 105

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 106 SFVISGEVLGQRPMSQN 122


>gi|256026888|ref|ZP_05440722.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
          Length = 332

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIKLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEKYGA 105

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 106 SFVISGEVLGQRPMSQN 122


>gi|237744985|ref|ZP_04575466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229432214|gb|EEO42426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 333

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIKLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEKYGA 105

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 106 SFVISGEVLGQRPMSQN 122


>gi|288553719|ref|YP_003425654.1| argininosuccinate synthase [Bacillus pseudofirmus OF4]
 gi|288544879|gb|ADC48762.1| argininosuccinate synthase [Bacillus pseudofirmus OF4]
          Length = 403

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    L   GYDVI V L                 G+D+   +  
Sbjct: 3   KKKVVLAYSGGLDTSVAIKWLSDKGYDVIAVGL-------------DVGEGKDLDFVKEK 49

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  S  Y  D ++ +    ++P   ++A  E   P V   +R +    L+ +  Q G
Sbjct: 50  ALKVGASQSYTIDAKKEYAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 ATAVAHG 116


>gi|11498169|ref|NP_069395.1| hypothetical protein AF0559 [Archaeoglobus fulgidus DSM 4304]
 gi|2650065|gb|AAB90680.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 265

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 57/218 (26%)

Query: 9   LNSLDLDKNPKDMR--------VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +N   L+K  + MR        VV+A SGGVDSS +AA+ K  G DV+ VT         
Sbjct: 1   MNPETLEK-LQRMRGFLEGFKGVVIAFSGGVDSSTLAAVCKDAGLDVLAVT--------- 50

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFD---YEERFRNAVIVPFASSYAAGETPLPC 117
                     +++ DA ++   I V H   +       FR               T   C
Sbjct: 51  --VVSQKSPSREIKDAAKIAMEIGVKHEFVNMDILTPEFRE-------------NTSERC 95

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C + V  S L+S+  + G D +  G           D +  R   + +         +
Sbjct: 96  YFCKKKV-LSSLVSLAEERGYDAVFEGTNAS-------DLEGHRPGYKAVKE-------M 140

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
                            + K+ +R +A+ MG    DK 
Sbjct: 141 HGVYSPWAEF------GITKKEIRMVAKSMGFSFYDKP 172


>gi|317058631|ref|ZP_07923116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684307|gb|EFS21142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
          Length = 332

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++ +   SGG+DS++   +++  G +VI +    +     +++            A  +
Sbjct: 3   KIKALALFSGGLDSALAIKVVQEQGIEVIALNFVSHFFGGVNEK------------AEYM 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +      +E+R    V  P    Y  G+   PC+DC+  + F     +  + GA 
Sbjct: 51  AKQLGIQLEYIHFEKRHMEVVKDPV---YGRGKNMNPCIDCHSLM-FRIAGELLEKYGAS 106

Query: 140 VLATGHYIRSRLYVGD 155
            L +G  +  R    +
Sbjct: 107 FLISGEVLGQRPMSQN 122


>gi|257466119|ref|ZP_05630430.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917276|ref|ZP_07913516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691151|gb|EFS27986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 332

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++ +   SGG+DS++   +++  G +VI +    +     +++            A  +
Sbjct: 3   KIKALALFSGGLDSALAIKVVQEQGIEVIALNFVSHFFGGVNEK------------AEYM 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +      +E+R    V  P    Y  G+   PC+DC+  + F     +  + GA 
Sbjct: 51  AKQLGIQLEYIHFEKRHMEVVKDPV---YGRGKNMNPCIDCHSLM-FRIAGELLEKYGAS 106

Query: 140 VLATGHYIRSRLYVGD 155
            L +G  +  R    +
Sbjct: 107 FLISGEVLGQRPMSQN 122


>gi|257452082|ref|ZP_05617381.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
          Length = 333

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++ +   SGG+DS++   +++  G +VI +    +     +++            A  +
Sbjct: 4   KIKALALFSGGLDSALAIKVVQEQGIEVIALNFVSHFFGGVNEK------------AEYM 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +      +E+R    V  P    Y  G+   PC+DC+  + F     +  + GA 
Sbjct: 52  AKQLGIQLEYIHFEKRHMEVVKDPV---YGRGKNMNPCIDCHSLM-FRIAGELLEKYGAS 107

Query: 140 VLATGHYIRSRLYVGD 155
            L +G  +  R    +
Sbjct: 108 FLISGEVLGQRPMSQN 123


>gi|159041826|ref|YP_001541078.1| exsB protein [Caldivirga maquilingensis IC-167]
 gi|157920661|gb|ABW02088.1| exsB protein [Caldivirga maquilingensis IC-167]
          Length = 502

 Score = 72.1 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 73/206 (35%), Gaps = 30/206 (14%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  RV+V  SGG+DS+  A  L + GYDV  +    Y        + +          
Sbjct: 249 SSKPRRVLVVASGGLDSTTSATQLIKQGYDVTLLHF-NYGHVAEGPEENA---------V 298

Query: 77  RRVCDTINVSHYVFDYEERFRNAVI------VPFASSYAAGETPLP---CVDCNRTVKFS 127
           RR+ + +NV     +    F   V           +    G T           R + F 
Sbjct: 299 RRIAEFLNVPLLEVNM--DFFKIVKHSPLLGDGEINRRREGITGAEFAHEWVPARNLVFI 356

Query: 128 DL-LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            L +++   +G D +ATG  +       D+      +        +Q    +A    +  
Sbjct: 357 ALAVAIAEAMGYDYVATGVNLEEAGAYPDNEMEFIRLL-------NQV-MPYAVGPNKHV 408

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
           +L  P+G + K  +  L  E+G  + 
Sbjct: 409 ELLMPVGHLVKHEIVKLGLEIGAPLH 434


>gi|319744076|gb|EFV96453.1| argininosuccinate synthase [Streptococcus agalactiae ATCC 13813]
          Length = 396

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V +                 G+D+        
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCM-------------DVGEGKDLDFIHEKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           TI  +  Y+ D ++ F    ++P   ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 51  TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|307825440|ref|ZP_07655659.1| GMP synthase, large subunit [Methylobacter tundripaludum SV96]
 gi|307733615|gb|EFO04473.1| GMP synthase, large subunit [Methylobacter tundripaludum SV96]
          Length = 528

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 45/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD-VIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
            VV+ +SGGVDSSVVAALL +   D +  V      L+L+   +                
Sbjct: 232 HVVLGLSGGVDSSVVAALLHKAIEDQLTCVFVDTGLLRLHEGDQVMATF----------- 280

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS---- 131
                + + V     D E+R+ +A          +G T     +  R +  S  +     
Sbjct: 281 ----AEHMGVKVIRVDAEQRYLDA---------LSGIT---DPEQKRKIIGSLFIDIFDE 324

Query: 132 -VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +   A  LA G      +        +  + +           +    +  L  L  
Sbjct: 325 EAAKIADAKWLAQGTIYPDVIESAGSKSGKAHLIKSHHN-------VGGLPENMLLKLVE 377

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L  E+GL 
Sbjct: 378 PLRELFKDEVRKLGVELGLP 397


>gi|254168784|ref|ZP_04875625.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|197622221|gb|EDY34795.1| NAD+ synthetase [Aciduliprofundum boonei T469]
          Length = 263

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D   V+ +SGG+DSS VA L  +  G D V+GV +             S  + +D  DA+
Sbjct: 24  DKNAVIGLSGGLDSSTVAFLCVKALGRDRVLGVHM-----------PDSVTSKEDKEDAK 72

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V D + +     +  E     ++                +  N  +  ++L +  R   
Sbjct: 73  LVADELGIEFRTIEIGE-----IVEKM----------NEKIKLNNEMSTANLKARIRMAI 117

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +A      +RL  G   K   ++          S F              P+GD+ K
Sbjct: 118 LYGIANDE---NRLVTGTSNKSEILIGYFTKYGDGASDFA-------------PIGDLYK 161

Query: 198 ESVRDLAREMGLD 210
             VR LA ++G+ 
Sbjct: 162 TQVRMLAEKLGVP 174


>gi|15679507|ref|NP_276624.1| NH(3)-dependent NAD+ synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622628|gb|AAB85985.1| NH(3)-dependent NAD+ synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 274

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 59/194 (30%), Gaps = 51/194 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDSS VA L     G D V+G+ +             S     D+  AR V 
Sbjct: 39  VVLGLSGGVDSSTVAYLAVNALGPDRVLGLIM-----------PSSTTPRDDLRHARTVA 87

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSY--AAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           D + +     D         I P   S               N     +   L      L
Sbjct: 88  DELGIESETID---------IDPIIESLTGLCSHNANELALANLKPRARMVILYYHANSL 138

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                       +RL  G     R  +      +    Y               P+G + 
Sbjct: 139 ------------NRLVAGT--GNRTELLLGYFTK----YGDGGVD-------MLPIGGLY 173

Query: 197 KESVRDLAREMGLD 210
           K  VR+LA  +G+ 
Sbjct: 174 KGQVRELAGRLGVP 187


>gi|8039796|sp|O27554|NADE_METTH RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
          Length = 266

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 59/194 (30%), Gaps = 51/194 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDSS VA L     G D V+G+ +             S     D+  AR V 
Sbjct: 31  VVLGLSGGVDSSTVAYLAVNALGPDRVLGLIM-----------PSSTTPRDDLRHARTVA 79

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSY--AAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           D + +     D         I P   S               N     +   L      L
Sbjct: 80  DELGIESETID---------IDPIIESLTGLCSHNANELALANLKPRARMVILYYHANSL 130

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                       +RL  G     R  +      +    Y               P+G + 
Sbjct: 131 ------------NRLVAGT--GNRTELLLGYFTK----YGDGGVD-------MLPIGGLY 165

Query: 197 KESVRDLAREMGLD 210
           K  VR+LA  +G+ 
Sbjct: 166 KGQVRELAGRLGVP 179


>gi|326405707|gb|ADZ62778.1| argininosuccinate synthase [Lactococcus lactis subsp. lactis CV56]
          Length = 398

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 4   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIAACMDVGEGKDLNFIHDKALQVGAVESV--- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +E F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 61  ---------VLDCKEEFAKIFVGATLKGNLMYENKYPLVSALSRPLIAQKLVEVAKEKGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAIAHG 117


>gi|19703898|ref|NP_603460.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714062|gb|AAL94759.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 333

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 41/279 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIRLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGA 105

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + +G  +  R    +         + ++  +  S        + L     P     K 
Sbjct: 106 SFVISGEVLGQRPMSQNS--------QALEKVKKLSGM-EDLVLRPLSAKLLPP---SKA 153

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG----IALEG-----DIVHLN 249
            +        L   +    Q    ++  +++ +V+  + G    +   G      ++  +
Sbjct: 154 EIEGWVDRKKLLDINGRSRQRQ--MELMEFYGLVEYPSPGGGCLLTDPGYSSRLKVLEDD 211

Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288
           G +   H     + + +              V  +K S+
Sbjct: 212 GLLKDEH--YWLFKLIKEARFFRFSQARYLFVGRNKESN 248


>gi|223933968|ref|ZP_03625926.1| Argininosuccinate synthase [Streptococcus suis 89/1591]
 gi|330833642|ref|YP_004402467.1| argininosuccinate synthase [Streptococcus suis ST3]
 gi|223897360|gb|EEF63763.1| Argininosuccinate synthase [Streptococcus suis 89/1591]
 gi|329307865|gb|AEB82281.1| Argininosuccinate synthase [Streptococcus suis ST3]
          Length = 397

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV  A LK+D YDVI V + +          G       ++D      
Sbjct: 5   KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKDLDFIHDK---AL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           +I  +  +V D +E F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 51  SIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|114777702|ref|ZP_01452662.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551918|gb|EAU54452.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 515

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AALL R  G  +  V      L+L+ + +  +              
Sbjct: 220 VILGLSGGVDSSVAAALLHRAIGEQLTCVFVDNGLLRLHEAEQVMQTF------------ 267

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
               D + V     D  + F           + AG T     +  R +   + + V    
Sbjct: 268 ---ADNLGVKVIHVDASDEFLK---------HLAGVT---DPEAKRKIIGREFVEVFQQE 312

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +   A  LA G      +       ++    +           +          L  P
Sbjct: 313 SAKLPQARWLAQGTIYPDVIESAGSKTKKAHTIKSHHN-------VGGLPDTLHLKLLEP 365

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +GL 
Sbjct: 366 LRELFKDEVRELGVALGLP 384


>gi|254168754|ref|ZP_04875596.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|289596848|ref|YP_003483544.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|197622380|gb|EDY34953.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|289534635|gb|ADD08982.1| NAD+ synthetase [Aciduliprofundum boonei T469]
          Length = 263

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 48/195 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D   V+ +SGG+DSS VA L  +  G D V+GV +             S    +D  DA+
Sbjct: 24  DKNAVIGLSGGLDSSTVAFLCVKALGKDKVLGVHM-----------PDSITPKEDKEDAK 72

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQ 135
            V + + +     +  E     ++                   N    ++ + L  +   
Sbjct: 73  LVAEKLGIEFRTIEIGE-----IVEKMNEKIKL---KNEMSTANLKARIRMAILYGIAND 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                        +RL  G   K   ++          S F              P+GD+
Sbjct: 125 ------------ENRLVTGTSNKSEILIGYFTKYGDGASDFA-------------PIGDL 159

Query: 196 KKESVRDLAREMGLD 210
            K  VR LA ++G+ 
Sbjct: 160 YKTQVRMLAEKLGVP 174


>gi|304313871|ref|YP_003849018.1| NAD synthetase [Methanothermobacter marburgensis str. Marburg]
 gi|302587330|gb|ADL57705.1| predicted NAD synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 261

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDSS VA L     G D V+G+ +             +    +D+  A  V 
Sbjct: 31  VVLGLSGGVDSSTVAYLAADALGPDRVLGIIM-----------PSATTPPEDLKHAELVA 79

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +   + +   D         I P   S++       C      +  ++L    R +   V
Sbjct: 80  EETGIEYETVD---------IEPILESFSG-----ICGHRASKIALANLKPRARMM---V 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L       +RL  G     R  +      +    Y               P+G + K+ V
Sbjct: 123 LYYHANSMNRLVAGT--GNRTELLVGYFTK----YGDGGVD-------ILPIGCLYKKQV 169

Query: 201 RDLAREMGLD 210
           R LA E+G+ 
Sbjct: 170 RMLAEELGVP 179


>gi|296327469|ref|ZP_06870015.1| ThiI family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155295|gb|EFG96066.1| ThiI family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 333

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++ +   SGG+DS++   +++  G +VI +               S   G     A  
Sbjct: 2   EKIKALALFSGGLDSALAIKVVQEQGIEVIAL------------NFVSHFFGGKNEKAES 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +     D+++R    V  P    Y  G+   PC+DC+  + F     +  + GA
Sbjct: 50  MAKQLGIRLEYIDFKKRHILVVEDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGA 105

Query: 139 DVLATGHYIRSRLYVGD 155
             + +G  +  R    +
Sbjct: 106 SFVISGEVLGQRPMSQN 122


>gi|297618574|ref|YP_003706679.1| NAD+ synthetase [Methanococcus voltae A3]
 gi|297618634|ref|YP_003706739.1| NAD+ synthetase [Methanococcus voltae A3]
 gi|297377551|gb|ADI35706.1| NAD+ synthetase [Methanococcus voltae A3]
 gi|297377611|gb|ADI35766.1| NAD+ synthetase [Methanococcus voltae A3]
          Length = 301

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 37/191 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSS+VA L  +  G D V G+ +             S     D      V 
Sbjct: 61  VVLGLSGGIDSSLVAHLAVKALGADKVYGIIM-----------PESKSNPMDKEHGELVA 109

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQLGAD 139
             + +++++ D         I P   ++ AG       D N  +K F  L     +    
Sbjct: 110 HLLGINYHISD---------ITPLMEAFGAGGYS---KDENGNLKEFDKLADGNLKSRF- 156

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + T +Y  ++      G             + + Y  + T    L     P+G + K  
Sbjct: 157 RMCTLYYHANKNNNLVLGTG----------NKSEIYMGYGTKFGDLGCDVLPIGHLFKTE 206

Query: 200 VRDLAREMGLD 210
           VR+LAR +G+ 
Sbjct: 207 VRELARYIGVP 217


>gi|311694941|gb|ADP97814.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine bacterium HP15]
          Length = 525

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++ +SGGVDSSV AALL R  G  +  V      L+L+   +              
Sbjct: 227 NDKVLLGLSGGVDSSVTAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMDMF--------- 277

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSV 132
                    + V     D E+ F + +                 +  N  +  F D    
Sbjct: 278 ------ASNMGVKVIRVDAEDLFLSKLKGVSDPEQKRK------IIGNTFIDVFDD--EA 323

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                 + LA G      +        +  + +           +    +     L  PL
Sbjct: 324 ANIKDVNWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPETMKMKLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 RELFKDEVRRIGLELGLP 394


>gi|310659055|ref|YP_003936776.1| pp-loop superfamily ATP-utilizing protein [Clostridium sticklandii
           DSM 519]
 gi|308825833|emb|CBH21871.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
           [Clostridium sticklandii]
          Length = 428

 Score = 71.7 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 43/217 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            KD +VVVA SGGVDSS    LL     +V      L +   A   KG      +  +A 
Sbjct: 178 KKDKKVVVAFSGGVDSS----LLINLCKEV------LKDEVVAVTVKGPHIPESEFNEAV 227

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++ + I + H +          ++         G+    C  C   V F  +    +++G
Sbjct: 228 KLANAIGIKHEIV------EEDILS--IKEVREGDL-RRCYYCKSFV-FKYIDDYAKKIG 277

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +  G          DD    R   + ++    +S FL                +  K
Sbjct: 278 ASAVYDG-------SNIDDLSDYRPGMQALEELHVKSPFLET--------------NWTK 316

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             +R+ ++ +GL   DK  +   C + +  Y   + +
Sbjct: 317 SDIREYSKLLGLKTHDKEAA--ACLISRVSYGQTITK 351


>gi|116510952|ref|YP_808168.1| argininosuccinate synthase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|122940414|sp|Q032X6|ASSY_LACLS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116106606|gb|ABJ71746.1| argininosuccinate synthase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 397

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 3   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIAACMDVGEGKDLNFIHDKALQVGAVESV--- 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V + +  F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 60  ---------VLNCKAEFAEIFVGAALKGNLMYENKYPLVSALSRPLIAKKLVEVAKEKGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|298694200|gb|ADI97422.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 401

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAIECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|281490604|ref|YP_003352584.1| argininosuccinate synthase [Lactococcus lactis subsp. lactis KF147]
 gi|281374410|gb|ADA63939.1| Argininosuccinate synthase [Lactococcus lactis subsp. lactis KF147]
          Length = 398

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 4   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIAACMDVGEGKDLNFIHDKALQVGAVESV--- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +E F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 61  ---------VLDCKEEFAKIFVGAALKGNLMYENKYPLVSALSRPLIAQKLVEVAKEKGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAIAHG 117


>gi|70606119|ref|YP_254989.1| hypothetical protein Saci_0280 [Sulfolobus acidocaldarius DSM 639]
 gi|110816268|sp|Q4JBY3|QUEC_SULAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|68566767|gb|AAY79696.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 462

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 48/232 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++V +   +  + L K     R++V  SGG+DS+V A  L R G++V  +    ++  + 
Sbjct: 220 VMVDDKLEIRKVPLLKEKNKKRILVVASGGLDSTVAATYLVRQGHEVTLLHFNYHHKAEE 279

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR-------------NAVIVP---- 103
            +R+            R++ + +NV     D  + F+               V       
Sbjct: 280 KEREA----------VRKISEYLNVPFVEID-TDLFKIVGHSTLIKGSSGEIVKDRKGEE 328

Query: 104 ---FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRR 160
              FA  +               + FS  L++    G D +A+G  +       D+    
Sbjct: 329 GAEFAHEWVPARN---------LIFFSVALAMAEAYGFDAIASGINLEEAGAYPDNEMEF 379

Query: 161 RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
             M   +          +A    +  ++  P+G++ K  +  L  ++   + 
Sbjct: 380 VRMFSRLVP--------YAVGPNKKVEVLMPVGNLVKHEIVKLGVQIDAPLH 423


>gi|289551208|ref|YP_003472112.1| Argininosuccinate synthase [Staphylococcus lugdunensis HKU09-01]
 gi|315658710|ref|ZP_07911580.1| argininosuccinate synthase [Staphylococcus lugdunensis M23590]
 gi|289180740|gb|ADC87985.1| Argininosuccinate synthase [Staphylococcus lugdunensis HKU09-01]
 gi|315496341|gb|EFU84666.1| argininosuccinate synthase [Staphylococcus lugdunensis M23590]
          Length = 401

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+   L                 G+D+      
Sbjct: 2   KDKIVLAYSGGLDTSVAVKWLIDKGYDVVACCL-------------DVGEGKDLDTVHSK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  ++ +  + F +  +          E   P V   +R +    L+ +  Q  
Sbjct: 49  ALEMGAIECHIINATKEFSDDYVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTQ 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|320161725|ref|YP_004174950.1| hypothetical protein ANT_23240 [Anaerolinea thermophila UNI-1]
 gi|319995579|dbj|BAJ64350.1| hypothetical protein ANT_23240 [Anaerolinea thermophila UNI-1]
          Length = 273

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 79/226 (34%), Gaps = 53/226 (23%)

Query: 24  VVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVA SGGVDS   +VVA   +  G  ++ VTLQ                   V  A +V 
Sbjct: 27  VVAFSGGVDSGLVAVVAH--QALGERMLAVTLQ-----------SPVETPDGVQAAIQVA 73

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                 H V  Y++  ++  +           TP  C  C R  +   L+ + +Q G   
Sbjct: 74  RQFGFPHRVMPYDDLEKHTFVE---------NTPERCYFCKRE-RLGLLVELAKQAGFSA 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +  G          DD +  R   R ++                   +  PL    + K+
Sbjct: 124 VLEG-------SNVDDLQDYRPGKRAVNEL----------------GVLSPLIEAGLTKD 160

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            VR L+RE+ L + ++  +   C   +  Y   + R        G+
Sbjct: 161 EVRALSRELELPVWNRPSAP--CLATRFPYGMRITREGLERVARGE 204


>gi|325957778|ref|YP_004289244.1| NH(3)-dependent NAD(+) synthetase [Methanobacterium sp. AL-21]
 gi|325329210|gb|ADZ08272.1| NH(3)-dependent NAD(+) synthetase [Methanobacterium sp. AL-21]
          Length = 277

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 52/199 (26%)

Query: 23  VVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           VV+ +SGG+DS+  A L      K     ++G+ +                + +D+ DA 
Sbjct: 36  VVIGLSGGIDSATTAYLCARALEKEQ---ILGIIM-----------PTETTSYEDIDDAV 81

Query: 78  RVCDTINVSHYVF---DYEERFRNAVIVPFASSYAAGETPLPCVD-CN--RTVKFSDLLS 131
            V + + + + +    D    F    +   ++      TP   +   N    ++   L  
Sbjct: 82  TVAEELGIEYEIIAVDDLISPFNELCMHSVSNKLK--NTPSRSLANANLKARIRMMILYY 139

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               LG  V+ TG+  R+ L +G   K         D   D                  P
Sbjct: 140 HANDLGRMVVGTGN--RTELLIGYFTKY-------GDGGVD----------------ILP 174

Query: 192 LGDMKKESVRDLAREMGLD 210
           +G++ K  VR +A+ +G+ 
Sbjct: 175 IGNLYKTEVRSIAQILGVP 193


>gi|322515969|ref|ZP_08068909.1| argininosuccinate synthase [Streptococcus vestibularis ATCC 49124]
 gi|322125568|gb|EFX96903.1| argininosuccinate synthase [Streptococcus vestibularis ATCC 49124]
          Length = 403

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A  V 
Sbjct: 9   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKNLEFIHDKALTVG 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 58  A---VESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGAT 114

Query: 140 VLATG 144
            +A G
Sbjct: 115 TIAHG 119


>gi|312862464|ref|ZP_07722707.1| argininosuccinate synthase [Streptococcus vestibularis F0396]
 gi|311102107|gb|EFQ60307.1| argininosuccinate synthase [Streptococcus vestibularis F0396]
          Length = 399

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A  V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKNLEFIHDKALTVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---VESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|49483121|ref|YP_040345.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425010|ref|ZP_05601437.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427676|ref|ZP_05604075.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430311|ref|ZP_05606694.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433008|ref|ZP_05609368.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435912|ref|ZP_05611960.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903498|ref|ZP_06311389.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905276|ref|ZP_06313133.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908256|ref|ZP_06316087.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910537|ref|ZP_06318341.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913733|ref|ZP_06321522.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918659|ref|ZP_06326396.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923649|ref|ZP_06331329.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957699|ref|ZP_06375152.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500775|ref|ZP_06666626.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509726|ref|ZP_06668437.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524313|ref|ZP_06671000.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427444|ref|ZP_06820079.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590196|ref|ZP_06948835.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|56748595|sp|Q6GIC7|ASSY_STAAR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|49241250|emb|CAG39929.1| putative argininosuccinate synthase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272580|gb|EEV04703.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275869|gb|EEV07342.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279088|gb|EEV09699.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282423|gb|EEV12558.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285103|gb|EEV15222.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314517|gb|EFB44907.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317793|gb|EFB48165.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322765|gb|EFB53087.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325929|gb|EFB56237.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327921|gb|EFB58203.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331683|gb|EFB61195.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596453|gb|EFC01414.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791150|gb|EFC29965.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921276|gb|EFD98337.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095780|gb|EFE26041.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467823|gb|EFF10338.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128832|gb|EFG58463.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576495|gb|EFH95210.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438676|gb|ADQ77747.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 401

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L         + K      +   D R V  
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL------DVGEGKDLDIVYKKALDMRAV-- 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 ++ D  + F +  +          E   P V   +R +    L+ +  +  +  
Sbjct: 56  ----ECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVG 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|134299514|ref|YP_001113010.1| NAD+ synthetase [Desulfotomaculum reducens MI-1]
 gi|134052214|gb|ABO50185.1| NH(3)-dependent NAD(+) synthetase [Desulfotomaculum reducens MI-1]
          Length = 241

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 40/202 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DSS VAAL KR   D V+GV +                  +D  DA+ +  T
Sbjct: 25  VVGLSGGIDSSCVAALCKRAFPDNVLGVIM------------PCYSNPEDAADAKLLAKT 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           ++V +   + +E F   +       Y      L  V+    ++ + L   + +   + L 
Sbjct: 73  LSVPYEEIELDEPFDWFIQRLTGQDYDIHSCDLSIVNIKPRLRMTTLYYYSNRH--NYLV 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G   ++ + VG   K         D   D                  PL ++ K  VR 
Sbjct: 131 VGTTNKAEMVVGHYTKY-------GDGGAD----------------ILPLANLAKSEVRA 167

Query: 203 LAREMGLD--IADKSDSQDICF 222
           LA+E+G+   I DK+ S  + F
Sbjct: 168 LAKELGIPQRIIDKAPSAGLWF 189


>gi|228477972|ref|ZP_04062583.1| argininosuccinate synthase [Streptococcus salivarius SK126]
 gi|228250152|gb|EEK09405.1| argininosuccinate synthase [Streptococcus salivarius SK126]
          Length = 399

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A  V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALTVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---VESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|302388969|ref|YP_003824790.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199597|gb|ADL07167.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 278

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 52/200 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79
           RVVVA SGGVDS+    LLK        V L +       A   + S    +++ +AR++
Sbjct: 19  RVVVAFSGGVDST---FLLK--------VCLDVLGKENVLAVTARSSTYPARELEEARKL 67

Query: 80  CDTINVSHYVFDYEER----FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +    +H +   EE     F                 P  C  C + + F  L+++ R+
Sbjct: 68  AEKFGANHEIIVSEELDIPGFSE-------------NPPERCYHCKKEL-FGKLVAIARE 113

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G + +  G        + D G  R  M       +D+   L    +            +
Sbjct: 114 RGFNFVLDG------SNMDDTGDFRPGMR-----AKDELGVLSPLKEA----------GL 152

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  +R L+REMGL   +K 
Sbjct: 153 TKADIRALSREMGLPTWNKP 172


>gi|242398445|ref|YP_002993869.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
 gi|242264838|gb|ACS89520.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
          Length = 302

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 35/240 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGG DS+V A +LK+ GYDV  + + L              + +    A++ C+
Sbjct: 49  KVLVVISGGKDSAVTAYVLKKLGYDVECLHINL---------GIGGYSEKSEEYAKKQCE 99

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  YV    E     +            T  P        K           G  V+
Sbjct: 100 LMGVPLYVVRVRELLGAGI--------GEVRTRRPACSYCGLTKRYIFNKFAYDNGFGVI 151

Query: 142 ATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ATGH +      ++          + +   +   +  F+             PL  + + 
Sbjct: 152 ATGHNLDDEASFIFSNLMNWNTEYLAKQGPVLPGEGTFV---------KKIKPLYGLTER 202

Query: 199 SVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
            V   A  +GL+  I +   ++    ++  +  + ++    G      I  + G +  +H
Sbjct: 203 EVVAYALAVGLEYIINECPHARGATTIEYKEILNKMEEKRPGT----KINFVKGYLRKKH 258


>gi|146345375|sp|Q59491|ASSY_LACLM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|300069764|gb|ADJ59164.1| argininosuccinate synthase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 397

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 3   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIAACMDVGEGKDLNFIHDKALQVGAVESV--- 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +  F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 60  ---------VLDCKAEFAEIFVGAALKGNLMYENKYPLVSALSRPLIAKKLVKVAKEKGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|125623017|ref|YP_001031500.1| argininosuccinate synthase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491825|emb|CAL96745.1| ArgG protein [Lactococcus lactis subsp. cremoris MG1363]
          Length = 398

 Score = 71.3 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 4   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIAACMDVGEGKDLNFIHDKALQVGAVESV--- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +  F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 61  ---------VLDCKAEFAEIFVGAALKGNLMYENKYPLVSALSRPLIAKKLVKVAKEKGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAIAHG 117


>gi|116628501|ref|YP_821120.1| argininosuccinate synthase [Streptococcus thermophilus LMD-9]
 gi|161611279|ref|YP_140227.2| argininosuccinate synthase [Streptococcus thermophilus LMG 18311]
 gi|161936362|ref|YP_142144.2| argininosuccinate synthase [Streptococcus thermophilus CNRZ1066]
 gi|61211385|sp|Q5LXZ8|ASSY_STRT1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|61211386|sp|Q5M2K2|ASSY_STRT2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|122266904|sp|Q03IP8|ASSY_STRTD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116101778|gb|ABJ66924.1| argininosuccinate synthase [Streptococcus thermophilus LMD-9]
 gi|312279128|gb|ADQ63785.1| Argininosuccinate synthase [Streptococcus thermophilus ND03]
          Length = 399

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A  V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALTVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++P   ++A  E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---VESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|295695622|ref|YP_003588860.1| NAD+ synthetase [Bacillus tusciae DSM 2912]
 gi|295411224|gb|ADG05716.1| NAD+ synthetase [Bacillus tusciae DSM 2912]
          Length = 281

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 54/207 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+ +SGG+DS+VVA L  R    G  ++ V +                +   + DARR
Sbjct: 38  KVVLGLSGGIDSAVVAYLAARAFDRG-QILAVLM-----------PYKTSSPASLDDARR 85

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQ 135
           V + +++   + D         I P   ++ AG+     +     +   +   L   + +
Sbjct: 86  VVEQLDLPSEIVD---------ITPMVDAFFAGDPEASALRRGNRMARERMCVLYDRSAR 136

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA V+ T                +  +              + T    +     P+GD+
Sbjct: 137 DGALVIGT--------------SNKTELLLG-----------YGTQFGDMASAINPIGDL 171

Query: 196 KKESVRDLAREMGLD--IADKSDSQDI 220
            K  +R +AR +G+   I +K  S D+
Sbjct: 172 YKTQIRQVARYLGVPREIQEKPPSADL 198


>gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 307

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 30/228 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V A +LKR GY+V+G  + L                + V D  
Sbjct: 45  PPGARVVVALSGGKDSLVTAFVLKRLGYEVLGFFVDLGIEENNFSLDSR----RAVEDF- 99

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C    +   VF  +E+F   +         A      C  C  T K   +      + 
Sbjct: 100 --CREKEIPLEVFSLKEKFGKTIPE------VARRQERICALCGVT-KRHLMNEYALAVN 150

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT----TQQQLCDLRFPLG 193
           A  LATGH +            R  +           Y          +        PL 
Sbjct: 151 AYALATGHTLDDMAASLLANLTRWDLH----------YLAKGLPVLPPEPGFARKIKPLA 200

Query: 194 DMKKESVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              ++ +   A   G+    A    + +  F +     ++++  + G+
Sbjct: 201 LQGEKEILAFAELHGIKPTTAQCPYAAEAKFKRYKAVLNMLEEKSPGL 248


>gi|307152944|ref|YP_003888328.1| GMP synthase large subunit [Cyanothece sp. PCC 7822]
 gi|306983172|gb|ADN15053.1| GMP synthase, large subunit [Cyanothece sp. PCC 7822]
          Length = 528

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG       ++D    
Sbjct: 224 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLVQIFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
               ++     +  ERF   +                 +  +  +K       + +LG  
Sbjct: 276 -QQFHIPVVYVNSRERFLTQLKGVTDPEEKRR------LIGHEFIKV--FEEESNRLGPF 326

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +   + +    +     L  PL  + K+
Sbjct: 327 DYLAQGTLYPDVIESADSNVDPQTGERVAVKIKSH-HNVGGLPKNLRFKLVEPLRKLFKD 385

Query: 199 SVRDLAREMGLD 210
            VR LAR +GL 
Sbjct: 386 EVRKLARAIGLP 397


>gi|257456012|ref|ZP_05621221.1| GMP synthase [Enhydrobacter aerosaccus SK60]
 gi|257446601|gb|EEV21635.1| GMP synthase [Enhydrobacter aerosaccus SK60]
          Length = 527

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 73/221 (33%), Gaps = 47/221 (21%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNS 57
                +    L +   D +V++ +SGGVDSSVVAALL +  G  +  V      L+L+  
Sbjct: 209 DNIIEMRVAQLKEQIGDEQVLLGLSGGVDSSVVAALLHKAIGEQLTCVFVDNGLLRLHEG 268

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETP 114
            +                 R   + + V     D EERF  A   V  P A     G+T 
Sbjct: 269 DQVM---------------RIFAENMGVKVIRVDAEERFLTALAGVSDPEAKRKIIGKTF 313

Query: 115 LPCVDCNRTVKFSDLLSVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
                              R+L     G   LA G      +      + +  + +    
Sbjct: 314 -----------IDVFADTARELSGEGRGIQFLAQGTIYPDVIESAKSHQGKAHVIKSHHN 362

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                  +          L  PL D+ K+ VR L   +GL 
Sbjct: 363 -------VGGLPDDLQFKLVEPLRDLFKDEVRKLGVTLGLP 396


>gi|114320176|ref|YP_741859.1| GMP synthase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312013|sp|Q0A9W8|GUAA_ALHEH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114226570|gb|ABI56369.1| GMP synthase (glutamine-hydrolyzing) [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 525

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL R  G  +  V     ++    K +G               
Sbjct: 229 KVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRKDEGDQVMATF-------A 278

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V+    D E RF  A+                 +  N  ++  D     R    D 
Sbjct: 279 RHMGVNVIRVDAEARFLEALKGVDDPERKRK------IIGNMFIEVFDE-QAARLTEVDW 331

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +     L  PL ++ K+ V
Sbjct: 332 LAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPEDMTLKLVEPLRELFKDEV 384

Query: 201 RDLAREMGLD 210
           R +  E+GL 
Sbjct: 385 RRIGLELGLP 394


>gi|307266583|ref|ZP_07548114.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391761|ref|ZP_08213282.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306918380|gb|EFN48623.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992199|gb|EGD50670.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 297

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 24/225 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V   +LKR GY+V+G  + L         +             
Sbjct: 45  PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDLGIEENNFSSRSR-------EVVE 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++   +   +E+FR  +  P  + +        C  C  T K   +   T  + 
Sbjct: 98  NFCKENDIPLEIVSLKEKFRKGI--PDVAKH----QDRICALCGVT-KRHLMNEYTLSVK 150

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
           AD LATGH +     +      R  +          S       ++        PL    
Sbjct: 151 ADALATGHTLDDMAKLLLANLFRWDLHHL-------SKGTPVLPEEPGFARKIKPLAFQA 203

Query: 197 KESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGI 239
           +E +   A+   +    A    S++  + +  +  D+++  + GI
Sbjct: 204 EEEIIAFAKLHNIKPVTAVCPYSREAKYTRYQEALDMLEENSPGI 248


>gi|32473865|ref|NP_866859.1| ATP-utilizing enzyme [Rhodopirellula baltica SH 1]
 gi|32444401|emb|CAD74400.1| conserved hypothetical protein-putative ATP-utilizing enzyme
           [Rhodopirellula baltica SH 1]
          Length = 316

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 75/196 (38%), Gaps = 47/196 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VVA SGGVDSSVVAA   R G DV+ VT            +    A   +  ARRV + +
Sbjct: 32  VVAFSGGVDSSVVAAAAHRTGRDVVAVT-----------AQSPAVARWQLDWARRVAEQV 80

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++H     +E  R        SSY    +   C  C +T+ +  L  +  Q GA ++  
Sbjct: 81  GITHQFVSTDESDR--------SSYRRNHSD-RCFYCKQTL-YEFLTPIAEQRGATIV-- 128

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
                S     D G  R  +                        ++ PL D  + K +VR
Sbjct: 129 -----SGTNADDLGDHRPGITAGTQ-----------------ARVQTPLADLGIGKSAVR 166

Query: 202 DLAREMGLDIADKSDS 217
            LA    L+ AD   S
Sbjct: 167 QLAAHFDLENADLPAS 182


>gi|154173946|ref|YP_001408829.1| hypothetical protein CCV52592_1718 [Campylobacter curvus 525.92]
 gi|112803690|gb|EAU01034.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 257

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 51/195 (26%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDSS    LL +   DV+G          A   K    + +++ +A   C   
Sbjct: 18  AVAFSGGVDSS----LLAKLANDVLG------EKAVAITIKSPYMSAREIDEAVEFCKIY 67

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
           N+ H + +                     T  P   C  C ++V F+ L+    +LG   
Sbjct: 68  NIKHEILEL--------------GILEDITDNPKDRCYICKKSV-FAQLMKRACELGFTN 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A G          D G+ R  +    +L                  +  PL ++ K  +
Sbjct: 113 IADG------TNADDLGEYRPGLKAKDELG-----------------VLSPLKNLSKVDI 149

Query: 201 RDLAREMGLDIADKS 215
           R+L+RE+ L   DK 
Sbjct: 150 RELSRELNLPTHDKP 164


>gi|83647621|ref|YP_436056.1| GMP synthase [Hahella chejuensis KCTC 2396]
 gi|123531578|sp|Q2SCJ3|GUAA_HAHCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83635664|gb|ABC31631.1| GMP synthase, PP-ATPase domain/subunit [Hahella chejuensis KCTC
           2396]
          Length = 526

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             +V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +              
Sbjct: 228 QDKVLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMDMF--------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                    + +     + +++F + +             G T +          F    
Sbjct: 279 ------AKNMGIKVVRANAQDQFLSKLAGENDPERKRKIIGHTFIEV--------FDA-- 322

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +      LA G      +        +  + +           +    +     L  
Sbjct: 323 EAAKIKDVKWLAQGTIYPDVIESAAAKTGKAHVIKSHHN-------VGGLPEDMEMQLVE 375

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 376 PLRELFKDEVRKIGLELGLP 395


>gi|288906265|ref|YP_003431487.1| argininosuccinate synthase [Streptococcus gallolyticus UCN34]
 gi|288732991|emb|CBI14572.1| argininosuccinate synthase [Streptococcus gallolyticus UCN34]
          Length = 396

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           +V++A SGG+D+SV    L+K   YDV+ V + +          G       ++D A +V
Sbjct: 5   KVILAYSGGLDTSVAITWLMKD--YDVVAVCMDV----------GEGKDLDFIHDKALKV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA
Sbjct: 53  GA---VESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 TTIAHG 115


>gi|300871373|ref|YP_003786246.1| thiamine biosynthesis protein [Brachyspira pilosicoli 95/1000]
 gi|300689074|gb|ADK31745.1| thiamine biosynthesis protein [Brachyspira pilosicoli 95/1000]
          Length = 346

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 94/260 (36%), Gaps = 42/260 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + ++ +SGG+DS +V A+LKR+  DV+ V  +     +    K           A++
Sbjct: 2   KKAKAILLLSGGLDSMLVGAILKRENIDVLAV--RFVTGLEYPVIKNELMNIHYDDPAKK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D +N+       ++++ +  + P    Y  G +  PC+DC+       +L   +++  
Sbjct: 60  AADFLNIPIRFVSLKDKYIDMFLNP---KYGYGSSINPCLDCHI-----LMLKTAKKIME 111

Query: 137 --GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--- 191
             G D +ATG     R            +       +             L     P   
Sbjct: 112 EEGFDFIATGEVKGQRPMSQKSQDLINSIRESGLEGK-------LLRP--LSAKLLPITI 162

Query: 192 -----------LGDM--KKESVR-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
                      L D+  +   V+ +LA+E G+D      S   C +    Y    + + +
Sbjct: 163 AESEGLINRENLYDIYGRSRQVQMELAKEFGIDDYPIP-SGGCCSIVDKSYGRRYEELVS 221

Query: 238 GIALE-GDIVHLNGQILGRH 256
               E  ++  +    +GRH
Sbjct: 222 HNGREIINMELMQYLAIGRH 241


>gi|133901714|ref|NP_001076631.1| hypothetical protein M106.4 [Caenorhabditis elegans]
 gi|112982608|emb|CAL36508.1| C. elegans protein M106.4c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 709

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 45/257 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQL----YNSRKASKRKGSCCAGQDV 73
           D +V+V +SGGVDS+V AALL+R  G + V  + +      +    A ++          
Sbjct: 236 DKKVLVMVSGGVDSAVCAALLRRALGPNRVTAIHIDNGFMRHEESDAVEKSL-------- 287

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPC----VDCNRTVKFSD 128
                    +++  + +++   FR++          A  E   P     +  N  ++  D
Sbjct: 288 -------AALDLPIHRYNFGTTFRSS-TEHCKDGEVALDECDDPEMKRKIIGNTFIRVKD 339

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQQ 184
           ++   + L  +     +++       D  +    +     D  +   + ++ +    +  
Sbjct: 340 VI--MKDLNINH--DEYFLAQGTLRPDLIESASALASGHADTIKTHHNDTFLVRELRK-- 393

Query: 185 LCDLRFPLGDMKKESVRDLAREMGL--------DIADKSDSQDICFVQQGKYFDVVKRIN 236
           L  +  PL D  K+ VR+L +++GL               +  I      +   +     
Sbjct: 394 LGKVVEPLKDFHKDEVRELGKDLGLPESIVQRHPFPGPGLAIRILCASDKRPELMFNGPM 453

Query: 237 AGIALEGDIVHLNGQIL 253
               ++G I+ +  Q L
Sbjct: 454 YNGDVQGRIIDVTEQFL 470


>gi|71992717|ref|NP_001022257.1| hypothetical protein M106.4 [Caenorhabditis elegans]
 gi|37620046|emb|CAE48508.1| C. elegans protein M106.4b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 794

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 45/257 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQL----YNSRKASKRKGSCCAGQDV 73
           D +V+V +SGGVDS+V AALL+R  G + V  + +      +    A ++          
Sbjct: 321 DKKVLVMVSGGVDSAVCAALLRRALGPNRVTAIHIDNGFMRHEESDAVEKSL-------- 372

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPC----VDCNRTVKFSD 128
                    +++  + +++   FR++          A  E   P     +  N  ++  D
Sbjct: 373 -------AALDLPIHRYNFGTTFRSS-TEHCKDGEVALDECDDPEMKRKIIGNTFIRVKD 424

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQQ 184
           ++   + L  +     +++       D  +    +     D  +   + ++ +    +  
Sbjct: 425 VI--MKDLNINH--DEYFLAQGTLRPDLIESASALASGHADTIKTHHNDTFLVRELRK-- 478

Query: 185 LCDLRFPLGDMKKESVRDLAREMGL--------DIADKSDSQDICFVQQGKYFDVVKRIN 236
           L  +  PL D  K+ VR+L +++GL               +  I      +   +     
Sbjct: 479 LGKVVEPLKDFHKDEVRELGKDLGLPESIVQRHPFPGPGLAIRILCASDKRPELMFNGPM 538

Query: 237 AGIALEGDIVHLNGQIL 253
               ++G I+ +  Q L
Sbjct: 539 YNGDVQGRIIDVTEQFL 555


>gi|71992710|ref|NP_001022256.1| hypothetical protein M106.4 [Caenorhabditis elegans]
 gi|6016175|sp|Q09580|GUAA_CAEEL RecName: Full=Probable GMP synthase [glutamine-hydrolyzing];
           AltName: Full=Glutamine amidotransferase
 gi|3878715|emb|CAA87052.1| C. elegans protein M106.4a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 792

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 94/257 (36%), Gaps = 45/257 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQL----YNSRKASKRKGSCCAGQDV 73
           D +V+V +SGGVDS+V AALL+R  G + V  + +      +    A ++          
Sbjct: 319 DKKVLVMVSGGVDSAVCAALLRRALGPNRVTAIHIDNGFMRHEESDAVEKSL-------- 370

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPC----VDCNRTVKFSD 128
                    +++  + +++   FR++          A  E   P     +  N  ++  D
Sbjct: 371 -------AALDLPIHRYNFGTTFRSS-TEHCKDGEVALDECDDPEMKRKIIGNTFIRVKD 422

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQQ 184
           ++   + L  +     +++       D  +    +     D  +   + ++ +    +  
Sbjct: 423 VI--MKDLNINH--DEYFLAQGTLRPDLIESASALASGHADTIKTHHNDTFLVRELRK-- 476

Query: 185 LCDLRFPLGDMKKESVRDLAREMGL--------DIADKSDSQDICFVQQGKYFDVVKRIN 236
           L  +  PL D  K+ VR+L +++GL               +  I      +   +     
Sbjct: 477 LGKVVEPLKDFHKDEVRELGKDLGLPESIVQRHPFPGPGLAIRILCASDKRPELMFNGPM 536

Query: 237 AGIALEGDIVHLNGQIL 253
               ++G I+ +  Q L
Sbjct: 537 YNGDVQGRIIDVTEQFL 553


>gi|300115023|ref|YP_003761598.1| GMP synthase large subunit [Nitrosococcus watsonii C-113]
 gi|299540960|gb|ADJ29277.1| GMP synthase, large subunit [Nitrosococcus watsonii C-113]
          Length = 524

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 65/192 (33%), Gaps = 31/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AALL +  G  +I V            R+G      D   A     
Sbjct: 229 VLLGLSGGVDSSVAAALLHKAIGDQLICVF-----VDNGLLRQG----EADQVMATF-AR 278

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + +       E RF  A   VI P A     G   +   +              +   A
Sbjct: 279 HLGIKVIRISAEARFLEALAGVIDPEAKRKIIGRVFIEVFEE----------EAAKLSNA 328

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +        +  + +           +    ++    L  PL ++ K+
Sbjct: 329 QWLAQGTIYPDVIESAGGKTGKAQVIKSHHN-------VGGLPEELNLKLLEPLRELFKD 381

Query: 199 SVRDLAREMGLD 210
            VR L  E+GL 
Sbjct: 382 EVRQLGTELGLP 393


>gi|158604919|gb|EAT98904.3| thiamine biosynthesis protein:ExsB [Campylobacter concisus 13826]
          Length = 329

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 80/257 (31%), Gaps = 49/257 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++     +V+ + +            G     +     RR  
Sbjct: 1   MKALALFSGGLDSMLSMKIISDQNIEVVALYM----------DTGFGVDEEKHEVLRRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                S  V D    +   V+  F   Y  G+   PC+DC+  + F   L++ +   A+ 
Sbjct: 51  ALAGASLKVVDMRNEYLRDVL--FNPKYGYGKQFNPCIDCHGYM-FKTALNMLKSENANF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R            + R  D E D          + +C    P     K   
Sbjct: 108 IITGEVVGQRPMSQRR-DALFQVKRLADDEDD-------LVLRPMCAKLLPP---TKPE- 155

Query: 201 RD---------------------LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R+                     LA+E G +          C +    +   +K      
Sbjct: 156 REGWVDREKLLDISGRDRKPQLALAKEFGFEDFATPG--GGCLLTIESFAVKIKDYLKF- 212

Query: 240 ALEGDIVHLNGQILGRH 256
             E   + +    LGRH
Sbjct: 213 DKEMRDIDVTWLKLGRH 229


>gi|295399358|ref|ZP_06809340.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978824|gb|EFG54420.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 246

 Score = 71.0 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+KR            +               +D+ DA +V ++ 
Sbjct: 25  VVGISGGIDSAVVAHLIKRA-----------FPDNSLGLIMPCKSNPKDMEDALKVVESC 73

Query: 84  NVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQLGA 138
            + H++ D  E        V           ET     D N    ++ + L +V    G 
Sbjct: 74  GIKHFIIDLTETHNTLFGEVEKQLKEKGEWNETAARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 MVVGTDNAAEWYTGYFTKYGDGGVDLV--------------------------PLVHFTK 167

Query: 198 ESVRDLAREMGLD 210
             VR++AR +G+ 
Sbjct: 168 GEVREMARVLGVP 180


>gi|258424352|ref|ZP_05687232.1| argininosuccinate synthase [Staphylococcus aureus A9635]
 gi|257845365|gb|EEV69399.1| argininosuccinate synthase [Staphylococcus aureus A9635]
          Length = 401

 Score = 71.0 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYQKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAIECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|52081436|ref|YP_080227.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580]
 gi|52786811|ref|YP_092640.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580]
 gi|319647344|ref|ZP_08001566.1| argininosuccinate synthase [Bacillus sp. BT1B_CT2]
 gi|59799163|sp|Q65G67|ASSY_BACLD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|52004647|gb|AAU24589.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580]
 gi|52349313|gb|AAU41947.1| ArgG [Bacillus licheniformis ATCC 14580]
 gi|317390691|gb|EFV71496.1| argininosuccinate synthase [Bacillus sp. BT1B_CT2]
          Length = 403

 Score = 71.0 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+  GYDV+   L                 G+D+   ++
Sbjct: 3   QKKKVVLAYSGGLDTSVAIKWLQEQGYDVVACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  S+ YV D +E F     +    ++   E   P V   +R +    L+ V  + 
Sbjct: 50  KALQVGASNSYVIDAKEEFAKEFALTALQAHTLYEGKYPLVSALSRPLIAKKLVEVAEKE 109

Query: 137 GADVLATG 144
            A  +A G
Sbjct: 110 NAQAVAHG 117


>gi|296282204|ref|ZP_06860202.1| GMP synthase [Citromicrobium bathyomarinum JL354]
          Length = 524

 Score = 71.0 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 37/216 (17%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           M    AT++   ++ +   D +V+  +SGGVDSSV A L+    G  +  V         
Sbjct: 209 MAEYRATKIA--EIREQVGDAKVICGLSGGVDSSVAAILIHEAIGEQLTCVF-----VDH 261

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
              R+G     + ++      D  N+   V D EERF             AGET     +
Sbjct: 262 GLLRQGEREQVETMFR-----DHYNIPLVVVDAEERFMAG---------LAGET---DPE 304

Query: 120 CNRTVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R     + +        R  GAD LA G      +          +  +         
Sbjct: 305 KKRKFIGGEFINVFEEEANRIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN----- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    ++    L  PL ++ K+ VRDL RE+GL 
Sbjct: 360 --VGGLPERMNMQLVEPLRELFKDEVRDLGRELGLP 393


>gi|70726990|ref|YP_253904.1| argininosuccinate synthase [Staphylococcus haemolyticus JCSC1435]
 gi|119361329|sp|Q4L4X7|ASSY_STAHJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|68447714|dbj|BAE05298.1| argininosuccinate synthase [Staphylococcus haemolyticus JCSC1435]
          Length = 400

 Score = 71.0 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+ V L                 G+D+        
Sbjct: 4   KIVLAYSGGLDTSVAVKWLIDKGYDVVAVCL-------------DVGEGKDLDVVYSKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  Q  + 
Sbjct: 51  DMGAVECHIIDATKEFSDDFVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|312110082|ref|YP_003988398.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215183|gb|ADP73787.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score = 71.0 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+KR            +               +D+ DA +V ++ 
Sbjct: 25  VVGISGGIDSAVVAHLIKRA-----------FPDNSLGLIMPCKSNPKDMEDALKVVESC 73

Query: 84  NVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQLGA 138
            + H++ D  E        V           ET     D N    ++ + L +V    G 
Sbjct: 74  GIKHFIIDLTETHNTLFGEVEKQLKEKGEWNETAARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 MVVGTDNAAEWYTGYFTKYGDGGVDLV--------------------------PLVHFTK 167

Query: 198 ESVRDLAREMGLD 210
             VR++AR +G+ 
Sbjct: 168 GEVREMARILGVP 180


>gi|92112863|ref|YP_572791.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chromohalobacter salexigens DSM 3043]
 gi|91795953|gb|ABE58092.1| GMP synthase (glutamine-hydrolyzing) [Chromohalobacter salexigens
           DSM 3043]
          Length = 525

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V     ++    K +G             
Sbjct: 227 DRHVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRKNEGDQVMETF------ 277

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
               + V     D E+ F         +       P     +  N  +   D     +  
Sbjct: 278 -ASHMGVRVLRVDAEDEF--------LTKLEGENDPEAKRKIIGNTFIDVFD-REAAKIE 327

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G      +        +  + +           +    +     L  PL ++ 
Sbjct: 328 GVDFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPETMKLKLVEPLRELF 380

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 381 KDEVRKLGLELGLP 394


>gi|297527115|ref|YP_003669139.1| NAD+ synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256031|gb|ADI32240.1| NAD+ synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 275

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 58/189 (30%), Gaps = 41/189 (21%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDSSV   L LK  G + V  + +                  +D+ DA  +  
Sbjct: 37  VIGLSGGVDSSVTLLLALKAVGPEKVTAMFM----------PDTRATPKRDMEDALWLVK 86

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              + +YV           I     SY+     +P  + N  +   +L +  R       
Sbjct: 87  KYGIKYYVIR---------IDDIVDSYSV----MPFFNINYNIPTGNLRARIRMNILYYY 133

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A  H                   +  D   D                  P+G + K  VR
Sbjct: 134 ANLHNYLVVGTGDRSEILIGYFTKFGDGGVD----------------ILPIGSLYKTQVR 177

Query: 202 DLAREMGLD 210
            +   +GL 
Sbjct: 178 KMGEYLGLP 186


>gi|260893039|ref|YP_003239136.1| Thiamine biosynthesis protein-like protein [Ammonifex degensii KC4]
 gi|260865180|gb|ACX52286.1| Thiamine biosynthesis protein-like protein [Ammonifex degensii KC4]
          Length = 329

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 26/139 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+K  G +V+GV                     D   A+++ 
Sbjct: 1   MKALALFSGGLDSILAVKLIKLQGIEVVGVVF--------------TSPFFDASRAKQMA 46

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----RQL 136
           + + +   V D  E     V+ P    +  G+   PC+DC+     + +L       ++ 
Sbjct: 47  EKLGLPLRVVDITEELIPLVLNP---RHGYGKHFNPCIDCH-----ALMLRRAGELMKEE 98

Query: 137 GADVLATGHYIRSRLYVGD 155
           GA  + TG  +  R    +
Sbjct: 99  GASFIITGEVLGERPMSQN 117


>gi|313888212|ref|ZP_07821886.1| NAD+ synthase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845902|gb|EFR33289.1| NAD+ synthase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 238

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 43/197 (21%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGG+DS+VVAAL K           +++               +D  DA +V + +++
Sbjct: 29  GLSGGIDSAVVAALAK-----------RVFPDNSLGLIMPCDSIDKDREDALKVAEALDL 77

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                D    F   +   F S      +     +    ++ + L    + LG   L  G 
Sbjct: 78  ETKTIDLTSTFEELMKASFTSDNRMARS-----NIKPRLRMTTLYYYAQDLG--YLVLGP 130

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
              S  Y+G   K         D   D                  P+ ++ K  +  +AR
Sbjct: 131 SNASEWYLGYSTKY-------GDSGAD----------------IMPIANILKTDIFKVAR 167

Query: 206 EMGLD--IADKSDSQDI 220
           E+GL   + +K  S  +
Sbjct: 168 ELGLPDFVINKKPSAGL 184


>gi|218439824|ref|YP_002378153.1| GMP synthase [Cyanothece sp. PCC 7424]
 gi|226738434|sp|B7K8T7|GUAA_CYAP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218172552|gb|ACK71285.1| GMP synthase, large subunit [Cyanothece sp. PCC 7424]
          Length = 542

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG      +++D    
Sbjct: 238 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLMEIFD---- 289

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
               ++     +  E+F   +                 +  +  +K       + +LG  
Sbjct: 290 -HQFHIPVVYVNSREQFLEQLKGVTDPEEKRR------LIGHEFIKV--FEEESNRLGPF 340

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +   + +    +     L  PL  + K+
Sbjct: 341 DYLAQGTLYPDVIESADSNVDPQTGERVAVKIKSH-HNVGGLPKNLRFKLVEPLRKLFKD 399

Query: 199 SVRDLAREMGLD 210
            VR +AR +GL 
Sbjct: 400 EVRKVARSIGLP 411


>gi|292493716|ref|YP_003529155.1| GMP synthase, large subunit [Nitrosococcus halophilus Nc4]
 gi|291582311|gb|ADE16768.1| GMP synthase, large subunit [Nitrosococcus halophilus Nc4]
          Length = 524

 Score = 70.6 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AALL +  G  +I V                     D   A     
Sbjct: 229 VLLGLSGGVDSSVAAALLHKAIGNQLICVF---------VDNGLLRLGEADQVMATF-AR 278

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
            + +     D E RF  A   V+ P A     G   +                   +L  
Sbjct: 279 HLGIKVIRIDAESRFLEALAGVVDPEAKRKIIGRVFIEV-----------FEEAAAELPN 327

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 328 VQWLAQGTIYPDVIESAGGKTGKAQVIKSHHN-------VGGLPEELNLKLLEPLRELFK 380

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+GL 
Sbjct: 381 DEVRHLGTELGLP 393


>gi|307824462|ref|ZP_07654687.1| tRNA methyl transferase-like protein [Methylobacter tundripaludum
           SV96]
 gi|307734446|gb|EFO05298.1| tRNA methyl transferase-like protein [Methylobacter tundripaludum
           SV96]
          Length = 348

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 87/258 (33%), Gaps = 33/258 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + V  +SGG+DS + A  +   G  V G+    + +    +         D    +R
Sbjct: 3   KQRKAVALISGGLDSMLAAKTIMEQGVHVEGI---NFFTGFCVEGHTHAIRANDKAKPKR 59

Query: 79  -----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                V + + +  ++ D  E +++ +I P    +  G    PC+DC   +     ++  
Sbjct: 60  NNSLWVAEQLGMKLHIVDVIEEYKDVLINP---KHGYGAHMNPCLDCKIFM-----VNKA 111

Query: 134 RQL----GADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFAT 180
           +Q       D + TG  I  R           I         + RP+  +   +      
Sbjct: 112 KQWIVENDFDFIITGEVIGQRPMSQRKATMPIISKESGADDLLLRPLCAKNLPATLPERE 171

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--G 238
                  L    G  +K  +  +A   G D   +  +   CF+    Y   +  +     
Sbjct: 172 GWVDREKLHDFSGRSRKPQM-AMAEGFGFDEYAQP-AGGCCFLTDASYSSKLVDLWKARD 229

Query: 239 IALEGDIVHLNGQILGRH 256
              + D+  +    +GRH
Sbjct: 230 GDKQYDLDDVMLLKVGRH 247


>gi|152998143|ref|YP_001342978.1| GMP synthase [Marinomonas sp. MWYL1]
 gi|226739640|sp|A6W2W4|GUAA_MARMS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150839067|gb|ABR73043.1| GMP synthase, large subunit [Marinomonas sp. MWYL1]
          Length = 525

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + +   D +V++A+SGGVDSSVVAALL +  G  +  V      L+L+   +        
Sbjct: 221 MQEQVGDKKVLLALSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVM------ 274

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                    +   D + V     D E+ F   +                 +  N  +   
Sbjct: 275 ---------KMFADNMGVKVIRVDAEDLFLGKLANEADPEKKRK------IIGNTFI--D 317

Query: 128 DLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              +   +L   + LA G      +        +  + +           +    +    
Sbjct: 318 VFDTEATKLTDVEFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEDMQF 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR L  E+GL 
Sbjct: 371 KLVEPLRELFKDEVRKLGLELGLP 394


>gi|14521864|ref|NP_127340.1| hypothetical protein PAB1092 [Pyrococcus abyssi GE5]
 gi|5459084|emb|CAB50570.1| Predicted ATPase of the PP-loop superfamilyl [Pyrococcus abyssi
           GE5]
          Length = 303

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 31/197 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            KD +++VA+SGG DS+V A +L + GY++  + +      + SK+            A+
Sbjct: 45  KKDEKILVAVSGGKDSAVTAYVLNKLGYNIECLHI-NLGIGEYSKKSE--------EYAK 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQL 136
           + C+ I    ++   +E     ++            T   C    R +    +       
Sbjct: 96  KQCELIGAPLHIVRIKE-----ILGYGIGEVKTRRPTCSYCGLTKRYI----MNKFAYDN 146

Query: 137 GADVLATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           G D +ATGH +        +         + +   L   +  F+             PL 
Sbjct: 147 GFDAIATGHNLDDEASFLLNNLLYWNTEYIAKGGPLLPAEGKFVKKVK---------PLY 197

Query: 194 DMKKESVRDLAREMGLD 210
           ++ +  V   A  +GL+
Sbjct: 198 ELTEREVVAYALAVGLE 214


>gi|312796277|ref|YP_004029199.1| GMP synthase [glutamine-hydrolyzing] [Burkholderia rhizoxinica HKI
           454]
 gi|312168052|emb|CBW75055.1| GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) [Burkholderia
           rhizoxinica HKI 454]
          Length = 527

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + RV++ +SGGVDSSV AALL R  G  +  V      L+L  + +  +  G        
Sbjct: 222 NERVILGLSGGVDSSVAAALLHRAIGDQLTCVFVDHGLLRLNEAEQVMETFG-------- 273

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                    + V     D  + F +           AG T     +  R +  ++ + V 
Sbjct: 274 -------RHLGVKVIHVDASDAFMSK---------LAGVT---DPEHKRKIIGAEFVEVF 314

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R+L  A  LA G      +     GK+     +           +    +     L
Sbjct: 315 QNEARKLTDAKWLAQGTIYPDVIESAGKGKKGAHTIKSHHN-------VGGLPETLNLKL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR+L  ++GL 
Sbjct: 368 LEPLRELFKDEVRELGVKLGLP 389


>gi|295399520|ref|ZP_06809502.1| argininosuccinate synthase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978986|gb|EFG54582.1| argininosuccinate synthase [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 402

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKIVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D +E F N   +    ++A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAELEG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 AVAVAHG 116


>gi|312109922|ref|YP_003988238.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1]
 gi|311215023|gb|ADP73627.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1]
          Length = 402

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKIVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D +E F N   +    ++A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAELEG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 AVAVAHG 116


>gi|172038179|ref|YP_001804680.1| GMP synthase [Cyanothece sp. ATCC 51142]
 gi|254800094|sp|B1WY30|GUAA_CYAA5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171699633|gb|ACB52614.1| GMP synthetase [Cyanothece sp. ATCC 51142]
          Length = 542

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 25/202 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++    +D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      D
Sbjct: 231 EIRAKVRDKRVLLALSGGVDSSTLAFLLHQA----IGDNLTCMFIDQGFMRKGEPERLMD 286

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           ++D        ++     +  +RF      V  P       G                  
Sbjct: 287 IFD-----KQFHIPVEYVNARDRFLKQLEGVTDPEKKRRLIGHEF-----------IQVF 330

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              +++LG  D LA G      +   D     +   R     +   + +    +     L
Sbjct: 331 EEESKRLGPFDYLAQGTLYPDVIESADTNIDPKTGERVAVKIKSH-HNVGGLPKDLRFKL 389

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR + R +GL 
Sbjct: 390 VEPLRKLFKDEVRKVGRSIGLP 411


>gi|315452550|ref|YP_004072820.1| Arginino succinate synthase [Helicobacter felis ATCC 49179]
 gi|315131602|emb|CBY82230.1| Arginino succinate synthase [Helicobacter felis ATCC 49179]
          Length = 352

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +VI +   +          G            +  
Sbjct: 1   MKALALFSGGLDSLLSMHLVASQGIEVIALHFNI----------GFGGNKDKREYLEKAS 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D +E+F + V+  F   Y  G+   PC+DC+  + F        +L AD 
Sbjct: 51  AQVGAQLLLCDIQEQFFDEVL--FKPKYGYGKYFNPCIDCHANM-FRQAFYKLLELQADF 107

Query: 141 LATGHYIRSRLYVG 154
           + +G  +  R    
Sbjct: 108 VISGEVLGQRPKSQ 121


>gi|296127467|ref|YP_003634719.1| thiamine biosynthesis protein [Brachyspira murdochii DSM 12563]
 gi|296019283|gb|ADG72520.1| thiamine biosynthesis protein [Brachyspira murdochii DSM 12563]
          Length = 352

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  + ++ +SGG+DS +V A+LKR+  DV+   L+     + S  K       +   A+
Sbjct: 2   NKKAKAILLLSGGLDSMLVGAILKRENIDVLA--LRFVTGLEYSVIKEELLNIYNEDPAK 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           +  D +N+       ++ + +  + P    Y  G    PC+DC+       +L   +++ 
Sbjct: 60  KAADFLNIPIRFVSLKDVYLDMFLNP---KYGYGSAINPCLDCHI-----LMLKTAKKIM 111

Query: 137 ---GADVLATGHYIRSRLYVG 154
              G D +ATG     R    
Sbjct: 112 EEEGFDFIATGEVSGQRPMSQ 132


>gi|187924407|ref|YP_001896049.1| GMP synthase [Burkholderia phytofirmans PsJN]
 gi|226738408|sp|B2T5G8|GUAA_BURPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187715601|gb|ACD16825.1| GMP synthase, large subunit [Burkholderia phytofirmans PsJN]
          Length = 527

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 71/203 (34%), Gaps = 43/203 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AALL R  G  +  V                      + +A +
Sbjct: 222 NEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V     D + V     D  E F             AG T     +  R +  ++ + V  
Sbjct: 268 VMATFADHLGVKVIHVDASEVFLRK---------LAGVT---DPEAKRKIIGAEFVEVFQ 315

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +     GK+     +           +    +     L 
Sbjct: 316 AEAGRLTDAKWLAQGTIYPDVIESAGKGKKGAQTIKSHHN-------VGGLPETLNLKLL 368

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL ++ K+ VR+L  ++GL  A
Sbjct: 369 EPLRELFKDEVRELGVKLGLPPA 391


>gi|57506130|ref|ZP_00372052.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57015614|gb|EAL52406.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 327

 Score = 70.2 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 37/251 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+ + G  V  + + +          G         + RR  
Sbjct: 1   MKALALFSGGLDSLLAMKLITQQGIAVKALNINI----------GFGSRSDKSEEMRRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ +  GA  
Sbjct: 51  ALVGAEFEMIDVRNSYLKEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKDEGASF 107

Query: 141 LATGHYIRSRLYVGDD----------GKRRRIMCRPMDLERDQSY---FLFATTQQQLCD 187
           + TG  +  R     +               ++ RPM  +              + +L  
Sbjct: 108 IITGEVLGQRPMSQRNDAMAKVKRLVADEEDLILRPMCAKNLPETKPEREGWVDRAKLEG 167

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +    G  +K  + ++A + G++  +       C +         K+I      +G++  
Sbjct: 168 IS---GRSRKRQL-EMAAKFGIEDFESPG--GGCLLT---LESFAKKIKDFKEFDGNMEV 218

Query: 248 LNGQIL--GRH 256
            + Q+L  GRH
Sbjct: 219 NDAQLLKYGRH 229


>gi|167040416|ref|YP_001663401.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300913703|ref|ZP_07131020.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561]
 gi|307723282|ref|YP_003903033.1| ATPase [Thermoanaerobacter sp. X513]
 gi|166854656|gb|ABY93065.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|300890388|gb|EFK85533.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561]
 gi|307580343|gb|ADN53742.1| ATPase [Thermoanaerobacter sp. X513]
          Length = 297

 Score = 69.8 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RVVVA+SGG DS V A +LK+ GY+V+G  + L           +  + +      
Sbjct: 45  PPKGRVVVAISGGKDSLVTAYVLKKLGYEVLGFFIDL-------GITQNDFSPRSREVVE 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++   + D +  +   +  P  +          C    R +    +   T  + 
Sbjct: 98  NFCKEHDIPLEIVDLKAGYGKGI--PEVAK-KHDRICAICGVTKRHL----MNEYTLAVN 150

Query: 138 ADVLATGHYI 147
           AD LATGH +
Sbjct: 151 ADALATGHTL 160


>gi|116753888|ref|YP_843006.1| PP-loop domain-containing protein [Methanosaeta thermophila PT]
 gi|116665339|gb|ABK14366.1| PP-loop domain protein [Methanosaeta thermophila PT]
          Length = 326

 Score = 69.8 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 29/139 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-------SKRKGSCCAGQ 71
           +  RV VA+SGG DSSV+   LK           ++++ R+             S     
Sbjct: 47  RGGRVAVALSGGKDSSVLLYTLK-----------RIFSHRRDIELIALMVDEGISGYRED 95

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            + +A  + D ++V H    + E F    + +               PC  C    K   
Sbjct: 96  TLQNAAALADRLDVPHITLSFREEFGITIDEIAERDLHQ-------APCTYCGVMRKH-L 147

Query: 129 LLSVTRQLGADVLATGHYI 147
           L    R+L A  LATGH +
Sbjct: 148 LNKRARELNAIALATGHNL 166


>gi|223042875|ref|ZP_03612923.1| argininosuccinate synthase [Staphylococcus capitis SK14]
 gi|222443729|gb|EEE49826.1| argininosuccinate synthase [Staphylococcus capitis SK14]
          Length = 401

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  ++ D  + F    +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAIECHIIDATKEFSEDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSI 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|87311761|ref|ZP_01093876.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM
           3645]
 gi|87285545|gb|EAQ77464.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM
           3645]
          Length = 276

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 70/211 (33%), Gaps = 51/211 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA+SGGVDS+VVA              L L  S  A   +       ++ +ARRV   I
Sbjct: 21  AVALSGGVDSAVVAK----------AAHLALRESAVAVTARSPSVPASEIEEARRVAAEI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQLGADVL 141
            + H + D +E      I            P  C  C   +  +   L++          
Sbjct: 71  GIRHEIVDTQETQNPLYIQNA---------PDRCFHCKTELYSQIELLVAAIDA------ 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKES 199
                I +   V D G  R  M       ++               +R PL    + K  
Sbjct: 116 ---PLIINGANVDDQGDHRPGMIAA----KNH-------------QVRSPLIECGLTKAD 155

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
           VR LA+   L + DK  S   C   +  Y +
Sbjct: 156 VRALAQHWNLSVHDKPASP--CLASRIAYGE 184


>gi|242373128|ref|ZP_04818702.1| argininosuccinate synthase [Staphylococcus epidermidis M23864:W1]
 gi|242349282|gb|EES40883.1| argininosuccinate synthase [Staphylococcus epidermidis M23864:W1]
          Length = 401

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAIECHIIDATQEFSDDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|242309258|ref|ZP_04808413.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239524299|gb|EEQ64165.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 325

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++K  G DV+ +   +          G           + + 
Sbjct: 1   MKALALFSGGLDSLLAIKIIKDMGIDVLALHFNI----------GFVGKNDKSEALKEIL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I+V   V D  ++F + V+  FA  Y  G+   PC+DC+  + FS   S+    GA  
Sbjct: 51  AQIDVPLKVIDIRKQFFDEVL--FAPKYGYGKYFNPCIDCHGNM-FSHAFSLLESEGASF 107

Query: 141 LATGHYIRSRLYVG 154
           + +G  +  R    
Sbjct: 108 VISGEVLGQRPKSQ 121


>gi|182683079|ref|YP_001834826.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           CGSP14]
 gi|182628413|gb|ACB89361.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           CGSP14]
          Length = 156

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     L +   +KN    +V++A SGG+D+SV    LK+D YDV+ V + +      
Sbjct: 1   MRMPLKRPLKNRKKEKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV------ 53

Query: 61  SKRKGSCCAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               G       ++D A +V     V  YV D ++ F    ++    S+A  E   P V 
Sbjct: 54  ----GEGKDLDFIHDKALKVGA---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVS 106

Query: 120 C-NRTVKFSDLLSVTRQLGADVLATG 144
             +R +    L+ +  Q+GA  +A G
Sbjct: 107 ALSRPLISKKLVEIAHQIGATTIAHG 132


>gi|314933173|ref|ZP_07840538.1| argininosuccinate synthase [Staphylococcus caprae C87]
 gi|313653323|gb|EFS17080.1| argininosuccinate synthase [Staphylococcus caprae C87]
          Length = 401

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  ++ D  + F    +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAIECHIIDATKEFSEDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSI 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|259503176|ref|ZP_05746078.1| argininosuccinate synthase [Lactobacillus antri DSM 16041]
 gi|259168833|gb|EEW53328.1| argininosuccinate synthase [Lactobacillus antri DSM 16041]
          Length = 414

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A L   GYDVI   +                 G D+   ++   
Sbjct: 10  KIVLAYSGGLDTSVAIAWLMNKGYDVIACCI-------------DVGEGLDLEAIQQKAA 56

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            I      V D +  F    ++P    +A  E   P V   +R +    L+ V ++ GA 
Sbjct: 57  AIGAWKSVVIDAKRDFAEQFVLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEYGAT 116

Query: 140 VLATG 144
            +A G
Sbjct: 117 AIAHG 121


>gi|312869093|ref|ZP_07729267.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3]
 gi|311095339|gb|EFQ53609.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3]
          Length = 409

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV  A L   GYDVI   + +         +    A            
Sbjct: 5   KIVLAYSGGLDTSVAIAWLMNKGYDVIACCIDVGEGLDLDAIQHKAAAIGAWKSV----- 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D +  F    ++P    +A  E   P V   +R +    L+ V ++ GA  
Sbjct: 60  -------VIDAKRDFAEQFVLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEYGATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|78042619|ref|YP_359927.1| hypothetical protein CHY_1081 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994734|gb|ABB13633.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 338

 Score = 69.8 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 112/353 (31%), Gaps = 70/353 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC-AGQDVYDARRVC 80
           + +   SGG+DS++   L+   G +V  V          +     C   GQ      ++ 
Sbjct: 3   KALALFSGGLDSTLAIKLILEQGVEVEAV--------NFTSPFCRCLAKGQGCASTAKLA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  +V +  E +   V  P    +  G    PC+DC R  KF     +  ++GA  
Sbjct: 55  ADLGIKLHVQNCGEEYLRIVENP---PHGYGSALNPCIDC-RIFKFKKAKKLMEEIGAKF 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-------- 192
           + TG  +  R              R      D+   +     + L  L FP         
Sbjct: 111 MITGEVLGQRPNSQ---------RRDAINLIDREAGIKGLVLRPLSALHFPPTIAEQEGY 161

Query: 193 ----------GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGI 239
                     G  +K  + +LA   G++  D       C + + ++   V+   R N  +
Sbjct: 162 VSRDKLLAISGRSRKTQM-ELAASFGIN--DYPCPSGGCLLTKKEFAGKVQDLIRYNGKL 218

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRE 296
            +E     ++    GRH          R            +V  +   + +I     P E
Sbjct: 219 TVE----DIDRLKFGRH---------FRL-----SPTAKIIVGRNAQENELISYFKKPGE 260

Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-VPVFVQRNDDGV 348
            L     +      +     ED      K     R +  P   V V+  +D V
Sbjct: 261 FLAKVEGFTGPTTLIQGNPTEDDFYLAAKVTA--RYADTPEASVSVRIWNDSV 311


>gi|77164138|ref|YP_342663.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosococcus oceani ATCC 19707]
 gi|254435046|ref|ZP_05048553.1| GMP synthase, C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|91206812|sp|Q3JDG3|GUAA_NITOC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|76882452|gb|ABA57133.1| GMP synthase (glutamine-hydrolyzing) [Nitrosococcus oceani ATCC
           19707]
 gi|207088157|gb|EDZ65429.1| GMP synthase, C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 524

 Score = 69.8 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 65/192 (33%), Gaps = 31/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AALL +  G  +I V            R+G      D   A     
Sbjct: 229 VLLGLSGGVDSSVAAALLHKAIGDQLICVF-----VDNGLLRQG----EADQVMATF-AR 278

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + +       E RF  A   VI P A     G   +   +              +   A
Sbjct: 279 HLGIKVIHISAETRFLEALAGVIDPEAKRKIIGRVFIEVFEE----------EAAKLPNA 328

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +        +  + +           +    ++    L  PL ++ K+
Sbjct: 329 QWLAQGTIYPDVIESAGGKTGKAQVIKSHHN-------VGGLPEELNLKLLEPLRELFKD 381

Query: 199 SVRDLAREMGLD 210
            VR L  E+GL 
Sbjct: 382 EVRQLGTELGLP 393


>gi|15902146|ref|NP_357696.1| argininosuccinate synthase [Streptococcus pneumoniae R6]
 gi|15457639|gb|AAK98906.1| Argininosuccinate synthase [Streptococcus pneumoniae R6]
          Length = 415

 Score = 69.8 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M +     L +   +KN    +V++A SGG+D+SV    LK+D YDV+ V + +      
Sbjct: 1   MRMPLKRPLKNRKKEKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV------ 53

Query: 61  SKRKGSCCAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               G       ++D A +V     V  YV D ++ F    ++    S+A  E   P V 
Sbjct: 54  ----GEGKDLDFIHDKALKVGA---VESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVS 106

Query: 120 C-NRTVKFSDLLSVTRQLGADVLATG 144
             +R +    L+ +  Q+GA  +A G
Sbjct: 107 ALSRPLISKKLVEIAHQIGATTIAHG 132


>gi|302878076|ref|YP_003846640.1| GMP synthase, large subunit [Gallionella capsiferriformans ES-2]
 gi|302580865|gb|ADL54876.1| GMP synthase, large subunit [Gallionella capsiferriformans ES-2]
          Length = 539

 Score = 69.8 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 43/200 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSV AALL R  G  +  V +                    + +A +V  
Sbjct: 238 VILGLSGGVDSSVAAALLHRAIGTQLTCVFVDN--------------GLLRLNEAEQVME 283

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----- 132
                + V     D    F           + AG T     +  R +   + + V     
Sbjct: 284 TFAQNLGVKVIHVDASAEFL---------HHLAGVT---DPEQKRKIIGREFVEVFQRES 331

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +   A  LA G      +       ++    +           +          L  PL
Sbjct: 332 AKLSQAKWLAQGTIYPDVIESAGGKNKKAHTIKSHHN-------VGGLPDTMHLKLLEPL 384

Query: 193 GDMKKESVRDLAREMGLDIA 212
            ++ K+ VR+L  ++GL  A
Sbjct: 385 RELFKDEVRELGVQLGLPPA 404


>gi|262281331|ref|ZP_06059112.1| GMP synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257157|gb|EEY75894.1| GMP synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 522

 Score = 69.8 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 73/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L K   D +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLRKQIGDEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D EERF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEERFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLEFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|169632146|ref|YP_001705882.1| GMP synthase [Acinetobacter baumannii SDF]
 gi|169150938|emb|CAO99551.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter
           baumannii]
          Length = 522

 Score = 69.4 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E RF NA          AG T     +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEARFLNA---------LAGVT---DPEAKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|169797667|ref|YP_001715460.1| GMP synthase [Acinetobacter baumannii AYE]
 gi|184156475|ref|YP_001844814.1| GMP synthase [Acinetobacter baumannii ACICU]
 gi|213155539|ref|YP_002317584.1| GMP synthase [Acinetobacter baumannii AB0057]
 gi|215485021|ref|YP_002327262.1| GMP synthase [Acinetobacter baumannii AB307-0294]
 gi|239503066|ref|ZP_04662376.1| GMP synthase [Acinetobacter baumannii AB900]
 gi|260557610|ref|ZP_05829824.1| GMP synthase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|294839021|ref|ZP_06783704.1| GMP synthase [Acinetobacter sp. 6013113]
 gi|294842500|ref|ZP_06787183.1| GMP synthase [Acinetobacter sp. 6014059]
 gi|294858743|ref|ZP_06796512.1| GMP synthase [Acinetobacter sp. 6013150]
 gi|301345547|ref|ZP_07226288.1| GMP synthase [Acinetobacter baumannii AB056]
 gi|301512572|ref|ZP_07237809.1| GMP synthase [Acinetobacter baumannii AB058]
 gi|301596487|ref|ZP_07241495.1| GMP synthase [Acinetobacter baumannii AB059]
 gi|169150594|emb|CAM88503.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter
           baumannii AYE]
 gi|183208069|gb|ACC55467.1| GMP synthase, PP-ATPase domain/subunit [Acinetobacter baumannii
           ACICU]
 gi|193076025|gb|ABO10615.2| GMP synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213054699|gb|ACJ39601.1| GMP synthase [Acinetobacter baumannii AB0057]
 gi|213986883|gb|ACJ57182.1| GMP synthase [Acinetobacter baumannii AB307-0294]
 gi|260408783|gb|EEX02087.1| GMP synthase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|322506343|gb|ADX01797.1| guaA [Acinetobacter baumannii 1656-2]
 gi|323516212|gb|ADX90593.1| GMP synthase [Acinetobacter baumannii TCDC-AB0715]
          Length = 522

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E RF NA          AG T     +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEARFLNA---------LAGVT---DPEAKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|291276811|ref|YP_003516583.1| putative NH(3)-dependent NAD(+) synthetase [Helicobacter mustelae
           12198]
 gi|290964005|emb|CBG39844.1| putative NH(3)-dependent NAD(+) synthetase [Helicobacter mustelae
           12198]
          Length = 263

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 42/213 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMR----VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
            S  +  N L   KN    +    VV+ +SGG+DS+VVA L K              N+ 
Sbjct: 5   FSPKSIQNILLFLKNTLQAKSFHSVVLGLSGGIDSAVVAVLCKHA----------FPNTT 54

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
            A        + Q + DAR +C+   + H V      +       F  +    +TP P  
Sbjct: 55  LAISMPTLSSSKQHLEDARILCEHFEIPHIVHSIAP-YEEI----FTRNEKDFDTPKP-- 107

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
                ++  + L+  R      +   + ++ + L +G   K   ++              
Sbjct: 108 ---SALRLGNFLARIRMN----ILYDYSMQKNALVIGTSNKSELML-------------G 147

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           + T    L     P+G   K  +  LA+ + L 
Sbjct: 148 YGTIYGDLAYAINPIGGFFKTEIFALAKALELP 180


>gi|311069430|ref|YP_003974353.1| argininosuccinate synthase [Bacillus atrophaeus 1942]
 gi|310869947|gb|ADP33422.1| argininosuccinate synthase [Bacillus atrophaeus 1942]
          Length = 403

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 39/204 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+  GYDVI   L                 G+D+   ++
Sbjct: 3   EQKKVVLAYSGGLDTSVAIKWLQEQGYDVIACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +   + YV D +E F     +    ++   E   P V   +R +    L+ V  + 
Sbjct: 50  KALEVGATNSYVIDAKEEFAQEFALVSLQAHTLYEGKYPLVSALSRPLIAKKLVEVAEKE 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--G 193
            A  +A G                   C       DQ  F  +        ++  P+   
Sbjct: 110 NAVAVAHG-------------------CTGK--GNDQVRFEVSIKSLNPDLEVIAPVREW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   + A + G+ I    DS
Sbjct: 149 QWSREEEIEYAADRGIPIPINLDS 172


>gi|206902001|ref|YP_002251471.1| hypothetical protein DICTH_1659 [Dictyoglomus thermophilum H-6-12]
 gi|206741104|gb|ACI20162.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 268

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 80/228 (35%), Gaps = 50/228 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +V+VA SGGVDS+    LLK      G +V+ VTL                  +++ +A
Sbjct: 16  QKVIVAYSGGVDST---FLLKIAKDTLGENVLAVTL-----------VSPIFPKKEIEEA 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +     + V H + + +E  R      F         P  C  C +   F  +L + ++ 
Sbjct: 62  KEFAKKLKVQHIIINNDELLRKR---EFIE-----NPPDRCYICKKY-NFQKILEIAKEK 112

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               +  G                       D  +D      A  +  +      +G   
Sbjct: 113 NIKCILDGSNA--------------------DDLKDYRPGRKALKELGILSPLMEVG-FT 151

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           KE +R+L++++ L  ++K      C   +  Y + ++        EG+
Sbjct: 152 KEEIRELSKKLNLPTSEKPSL--ACLATRIPYGERIEIERLKRIEEGE 197


>gi|269798048|ref|YP_003311948.1| ExsB family protein [Veillonella parvula DSM 2008]
 gi|269094677|gb|ACZ24668.1| ExsB family protein [Veillonella parvula DSM 2008]
          Length = 248

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 52/198 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VA+SGGVDSS +A   K+ G      T++                  ++ DA+++ + 
Sbjct: 13  IAVALSGGVDSSYLAYAAKQSGIPCKAYTVK-----------SQFVPQFELNDAKKIAEF 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I++   + D        V+           T  P   C  C   V FS +    R+ G  
Sbjct: 62  IDIPLKIIDI------DVLEYDD------ITSNPSNRCYYCKHHV-FSTISEHARRDGFT 108

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
           +L  G          DD   R  M             +   +      ++ PL   ++ K
Sbjct: 109 ILCDG------TNASDDVDNRPGMK-----------AIAELS------VKSPLRECNLTK 145

Query: 198 ESVRDLAREMGLDIADKS 215
             +RDLA +  L   DK 
Sbjct: 146 SMIRDLAYKADLFTWDKP 163


>gi|91784093|ref|YP_559299.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia xenovorans LB400]
 gi|123168360|sp|Q13XE2|GUAA_BURXL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91688047|gb|ABE31247.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia xenovorans
           LB400]
          Length = 527

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
            V++ +SGGVDSSV AALL R  G  +  V                      + +A +V 
Sbjct: 224 HVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQVM 269

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
               D + V     D  E F             AG T     +  R +  ++ + V    
Sbjct: 270 ATFADHLGVKVIHVDASEVFLRK---------LAGVT---DPEAKRKIIGAEFVEVFQTE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L  A  LA G      +     GK+     +           +    +     L  P
Sbjct: 318 AGKLTDAKWLAQGTIYPDVIESAGKGKKATQTIKSHHN-------VGGLPETLNLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLDIA 212
           L ++ K+ VR+L  ++GL  A
Sbjct: 371 LRELFKDEVRELGVKLGLPPA 391


>gi|228474239|ref|ZP_04058974.1| argininosuccinate synthase [Staphylococcus hominis SK119]
 gi|228271598|gb|EEK12945.1| argininosuccinate synthase [Staphylococcus hominis SK119]
          Length = 400

 Score = 69.4 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+ V L                 G+D+      
Sbjct: 2   KDKIVLAYSGGLDTSVAVKWLIDKGYDVVAVCL-------------DVGEGKDLDVVYSK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  ++ D  + F    +          E   P V   +R +    L+ +  Q  
Sbjct: 49  ALDMGAVECHIIDATKEFSEDYVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTK 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|296158878|ref|ZP_06841706.1| GMP synthase, large subunit [Burkholderia sp. Ch1-1]
 gi|295890753|gb|EFG70543.1| GMP synthase, large subunit [Burkholderia sp. Ch1-1]
          Length = 527

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
            V++ +SGGVDSSV AALL R  G  +  V                      + +A +V 
Sbjct: 224 HVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQVM 269

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
               D + V     D  E F             AG T     +  R +  ++ + V    
Sbjct: 270 ATFADHLGVKVIHVDASEVFLRK---------LAGVT---DPEAKRKIIGAEFVEVFQTE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L  A  LA G      +     GK+     +           +    +     L  P
Sbjct: 318 AGKLTDAKWLAQGTIYPDVIESAGKGKKATQTIKSHHN-------VGGLPETLNLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLDIA 212
           L ++ K+ VR+L  ++GL  A
Sbjct: 371 LRELFKDEVRELGVKLGLPPA 391


>gi|314936819|ref|ZP_07844166.1| argininosuccinate synthase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655438|gb|EFS19183.1| argininosuccinate synthase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 400

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+ V L                 G+D+      
Sbjct: 2   KDKIVLAYSGGLDTSVAVKWLIDKGYDVVAVCL-------------DVGEGKDLDVVYSK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  ++ D  + F    +          E   P V   +R +    L+ +  Q  
Sbjct: 49  ALDMGAVECHIIDATKEFSEDYVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTK 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|171779008|ref|ZP_02920016.1| hypothetical protein STRINF_00891 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282366|gb|EDT47791.1| hypothetical protein STRINF_00891 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 396

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           +V++A SGG+D+SV    L+K   YDV+ V + +          G       ++D A +V
Sbjct: 5   KVILAYSGGLDTSVAITWLMKD--YDVLAVCMDV----------GEGKDLDFIHDKALKV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA
Sbjct: 53  GA---VESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 TTIAHG 115


>gi|126640233|ref|YP_001083217.1| GMP synthase [Acinetobacter baumannii ATCC 17978]
          Length = 485

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 176 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 232

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E RF NA          AG T     +  R +   
Sbjct: 233 VM-------QMFAENMGIRVIRADAEARFLNA---------LAGVT---DPEAKRKIIGR 273

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 274 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 326

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 327 DLAFELVEPLRDLFKDEVRKLGTTLGLP 354


>gi|330686299|gb|EGG97908.1| argininosuccinate synthase [Staphylococcus epidermidis VCU121]
          Length = 400

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+        
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDLVHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  KMGAVECHIIDATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLISKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|186476070|ref|YP_001857540.1| GMP synthase [Burkholderia phymatum STM815]
 gi|226738407|sp|B2JIA0|GUAA_BURP8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|184192529|gb|ACC70494.1| GMP synthase, large subunit [Burkholderia phymatum STM815]
          Length = 527

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 43/208 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D  V++ +SGGVDSSV AALL R  G  +  V                     
Sbjct: 215 NIRKQVGDEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLL 260

Query: 72  DVYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            + +A +V     D + V     D  E F +            G T     +  R +  +
Sbjct: 261 RLNEAEQVMSMFADNLGVKVIHVDASEAFMSK---------LKGVT---DPEAKRKIIGA 308

Query: 128 DLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           + + V      +L  A  LA G      +     GK+     +           +    +
Sbjct: 309 EFVEVFQTEAGKLTDAKWLAQGTIYPDVIESAGKGKKAAHTIKSHHN-------VGGLPE 361

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR+L  ++GL 
Sbjct: 362 TLNLKLLEPLRELFKDEVRELGVKLGLP 389


>gi|73663123|ref|YP_301904.1| argininosuccinate synthase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|119361330|sp|Q49WA0|ASSY_STAS1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|72495638|dbj|BAE18959.1| argininosuccinate synthase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 401

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVKWLLDKGYDVVACCL-------------DVGEGKDLELVHQKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  +  ++ D  E F    +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAIECHIIDATEEFSQDYVSYAIKGNLMYEGTYPLVSALSRPLISKKLVEIASKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|239636512|ref|ZP_04677514.1| argininosuccinate synthase [Staphylococcus warneri L37603]
 gi|239597867|gb|EEQ80362.1| argininosuccinate synthase [Staphylococcus warneri L37603]
          Length = 400

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+        
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDLVHDKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  KMGAVECHIIDATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLISKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|312978380|ref|ZP_07790122.1| GMP synthase [Lactobacillus crispatus CTV-05]
 gi|310894723|gb|EFQ43795.1| GMP synthase [Lactobacillus crispatus CTV-05]
          Length = 488

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G+     
Sbjct: 186 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGNQVMQA 242

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 243 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEKKRKIIGKEFIE 283

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   D LA G        V + G       +           +    +    
Sbjct: 284 VFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 333

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L  ++G+ 
Sbjct: 334 KLIEPLRKLFKDEVRELGEKLGIP 357


>gi|120554647|ref|YP_958998.1| GMP synthase [Marinobacter aquaeolei VT8]
 gi|226739639|sp|A1U1E2|GUAA_MARAV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120324496|gb|ABM18811.1| GMP synthase (glutamine-hydrolyzing) [Marinobacter aquaeolei VT8]
          Length = 525

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSV AALL +  G  +  V      L+L+   +                
Sbjct: 229 KVLLGLSGGVDSSVTAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMDMF----------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVK-FSDLLSV 132
                  + V     D E+ F         S       P     +  N  +  F D    
Sbjct: 278 ----ASNMGVKVIRVDAEDLF--------LSKLKGVNDPEQKRKIIGNTFIDVFDD--EA 323

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                 + LA G      +        +  + +           +    +     L  PL
Sbjct: 324 ANIKDVNWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPETMKMKLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 RELFKDEVRKIGLELGLP 394


>gi|15922650|ref|NP_378319.1| succinoglycan biosynthesis regulator [Sulfolobus tokodaii str. 7]
 gi|74573079|sp|Q96Y49|QUEC2_SULTO RecName: Full=7-cyano-7-deazaguanine synthase 2; AltName:
           Full=7-cyano-7-carbaguanine synthase 2; AltName:
           Full=Archaeosine biosynthesis protein queC 2; AltName:
           Full=PreQ(0) synthase 2
 gi|15623440|dbj|BAB67428.1| 460aa long hypothetical succinoglycan biosynthesis regulator
           [Sulfolobus tokodaii str. 7]
          Length = 460

 Score = 69.4 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 76/208 (36%), Gaps = 33/208 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  +V+V  SGG+DS+V A  L R GY++  +    ++  +  +R+            
Sbjct: 235 DKKIKKVLVIASGGLDSTVAATYLLRQGYEITLLHFNYHHKAEEREREA----------V 284

Query: 77  RRVCDTINVSHYVFDYEERFR------------NAVIVPFASSYAAGETPLPCVDCNRTV 124
           +++ + + V     D  + F+              V           E     V     +
Sbjct: 285 KKIAEYLQVPLIEID-TDLFKIIGHTTLLKGGGEIVKDRLGEE--GAEFAHEWVPARNLI 341

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            +S  L++    G D +A+G  +       D+      +   +          +AT   +
Sbjct: 342 FYSVALALAEAYGYDAIASGINLEEAGAYPDNEMEFVRLFAKLSP--------YATGPNK 393

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIA 212
             ++  P+G++ K  +  L  E+G  + 
Sbjct: 394 KVEVMMPVGNLVKHEIVKLGVEIGAPLH 421


>gi|298501904|ref|YP_003723844.1| argininosuccinate synthase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237499|gb|ADI68630.1| argininosuccinate synthase [Streptococcus pneumoniae TCH8431/19A]
          Length = 154

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            L +   +KN    +V++A SGG+D+SV    LK+D YDV+ V + +          G  
Sbjct: 6   PLKNRKKEKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEG 54

Query: 68  CAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVK 125
                ++D A +V     V  YV D ++ F    ++    S+A  E   P V   +R + 
Sbjct: 55  KDLDFIHDKALKVGA---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLI 111

Query: 126 FSDLLSVTRQLGADVLATG 144
              L+ +  Q GA  +A G
Sbjct: 112 SKKLVEIAHQTGATTIAHG 130


>gi|256844375|ref|ZP_05549861.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           125-2-CHN]
 gi|293381957|ref|ZP_06627919.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           214-1]
 gi|256613453|gb|EEU18656.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           125-2-CHN]
 gi|290921464|gb|EFD98504.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           214-1]
          Length = 516

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G+     
Sbjct: 214 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGNQVMQA 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 271 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEKKRKIIGKEFIE 311

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   D LA G        V + G       +           +    +    
Sbjct: 312 VFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L  ++G+ 
Sbjct: 362 KLIEPLRKLFKDEVRELGEKLGIP 385


>gi|182412017|ref|YP_001817083.1| GMP synthase, large subunit [Opitutus terrae PB90-1]
 gi|254800108|sp|B1ZNB4|GUAA_OPITP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|177839231|gb|ACB73483.1| GMP synthase, large subunit [Opitutus terrae PB90-1]
          Length = 512

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 64/204 (31%), Gaps = 35/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+       RV++ +SGGVDSSV AALL +  G  +  V            RKG     +
Sbjct: 207 DIRAKAGKSRVILGLSGGVDSSVAAALLHKAIGRQLTCVF-----VDNGLLRKGERDYVE 261

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSD 128
            +Y         ++   + D  + F   +             G T +             
Sbjct: 262 ALYK-----KHFHIDLRIVDASKLFLKRLKGVTEPEQKRKIIGRTFVEV----------- 305

Query: 129 LLSVTRQL--GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +    AD L  G      +     G     + +           +    ++   
Sbjct: 306 -FEKALKTVGHADFLGQGTLYPDVIESVSIGNNPASVIKTHHN-------VGGLPERMKL 357

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR +   +GL 
Sbjct: 358 KLIEPLRELFKDEVRKVGAALGLP 381


>gi|149175320|ref|ZP_01853942.1| GMP synthase [Planctomyces maris DSM 8797]
 gi|148845929|gb|EDL60270.1| GMP synthase [Planctomyces maris DSM 8797]
          Length = 532

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 70/213 (32%), Gaps = 33/213 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           +S         + K   D +V+  +SGGVDSSVVAALL    Y  IG  L          
Sbjct: 217 ISNLIEQEIETIRKRVGDKQVICGLSGGVDSSVVAALL----YRAIGSQLSCIFVDNGLL 272

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           RKG     +      R  +      +V D  + F +           AG T        R
Sbjct: 273 RKGEADEVEH-----RFGEHFKTDLHVVDARDLFLSE---------LAGVT---DPQEKR 315

Query: 123 TVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            +     +            A  LA G      +  G +        +           +
Sbjct: 316 KIIGRLFIEVFQKEAASIENAKFLAQGTLYPDVIESGANPDGPAATIKSHHN-------V 368

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++   +L  PL ++ K+ VR +  E+GL 
Sbjct: 369 GGLPEKLGFELIEPLRELFKDEVRQMGHELGLP 401


>gi|15923951|ref|NP_371485.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926550|ref|NP_374083.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           N315]
 gi|57651652|ref|YP_185833.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160547|ref|YP_493564.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194656|ref|YP_499452.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267395|ref|YP_001246338.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393448|ref|YP_001316123.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221044|ref|YP_001331866.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979287|ref|YP_001441546.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509161|ref|YP_001574820.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142107|ref|ZP_03566600.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253316122|ref|ZP_04839335.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253731569|ref|ZP_04865734.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|255005751|ref|ZP_05144352.2| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795304|ref|ZP_05644283.1| argininosuccinate synthase [Staphylococcus aureus A9781]
 gi|258406953|ref|ZP_05680106.1| argininosuccinate synthase [Staphylococcus aureus A9763]
 gi|258421921|ref|ZP_05684842.1| argininosuccinate synthase [Staphylococcus aureus A9719]
 gi|258435318|ref|ZP_05689057.1| argininosuccinate synthase [Staphylococcus aureus A9299]
 gi|258447229|ref|ZP_05695378.1| argininosuccinate synthase [Staphylococcus aureus A6300]
 gi|258449989|ref|ZP_05698087.1| argininosuccinate synthase [Staphylococcus aureus A6224]
 gi|258452087|ref|ZP_05700103.1| argininosuccinate synthase [Staphylococcus aureus A5948]
 gi|258455502|ref|ZP_05703461.1| argininosuccinate synthase [Staphylococcus aureus A5937]
 gi|262049312|ref|ZP_06022186.1| argininosuccinate synthase [Staphylococcus aureus D30]
 gi|262052159|ref|ZP_06024367.1| argininosuccinate synthase [Staphylococcus aureus 930918-3]
 gi|269202576|ref|YP_003281845.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282922241|ref|ZP_06329936.1| argininosuccinate synthase [Staphylococcus aureus A9765]
 gi|282927184|ref|ZP_06334806.1| argininosuccinate synthase [Staphylococcus aureus A10102]
 gi|284023888|ref|ZP_06378286.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           132]
 gi|294847949|ref|ZP_06788696.1| argininosuccinate synthase [Staphylococcus aureus A9754]
 gi|295405767|ref|ZP_06815576.1| argininosuccinate synthase [Staphylococcus aureus A8819]
 gi|296276173|ref|ZP_06858680.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297245358|ref|ZP_06929229.1| argininosuccinate synthase [Staphylococcus aureus A8796]
 gi|304381485|ref|ZP_07364135.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|54036773|sp|P63645|ASSY_STAAN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|54040842|sp|P63644|ASSY_STAAM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|61211370|sp|Q5HHC4|ASSY_STAAC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119361326|sp|Q2FIB4|ASSY_STAA3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119361327|sp|Q2FZU1|ASSY_STAA8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166221023|sp|A7X0H5|ASSY_STAA1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|172048808|sp|A6QFH2|ASSY_STAAE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189046676|sp|A6U068|ASSY_STAA2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189081215|sp|A5IRD9|ASSY_STAA9 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189081216|sp|A8Z067|ASSY_STAAT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|13700765|dbj|BAB42061.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246730|dbj|BAB57123.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57285838|gb|AAW37932.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126521|gb|ABD21035.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202214|gb|ABD30024.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740464|gb|ABQ48762.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945900|gb|ABR51836.1| Argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373844|dbj|BAF67104.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721422|dbj|BAF77839.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367970|gb|ABX28941.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724812|gb|EES93541.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257789276|gb|EEV27616.1| argininosuccinate synthase [Staphylococcus aureus A9781]
 gi|257841492|gb|EEV65933.1| argininosuccinate synthase [Staphylococcus aureus A9763]
 gi|257842254|gb|EEV66682.1| argininosuccinate synthase [Staphylococcus aureus A9719]
 gi|257848979|gb|EEV72962.1| argininosuccinate synthase [Staphylococcus aureus A9299]
 gi|257853977|gb|EEV76931.1| argininosuccinate synthase [Staphylococcus aureus A6300]
 gi|257856909|gb|EEV79812.1| argininosuccinate synthase [Staphylococcus aureus A6224]
 gi|257860302|gb|EEV83134.1| argininosuccinate synthase [Staphylococcus aureus A5948]
 gi|257862320|gb|EEV85089.1| argininosuccinate synthase [Staphylococcus aureus A5937]
 gi|259159978|gb|EEW45014.1| argininosuccinate synthase [Staphylococcus aureus 930918-3]
 gi|259162544|gb|EEW47112.1| argininosuccinate synthase [Staphylococcus aureus D30]
 gi|262074866|gb|ACY10839.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940463|emb|CBI48840.1| putative argininosuccinate synthase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282590873|gb|EFB95948.1| argininosuccinate synthase [Staphylococcus aureus A10102]
 gi|282593531|gb|EFB98525.1| argininosuccinate synthase [Staphylococcus aureus A9765]
 gi|285816640|gb|ADC37127.1| Argininosuccinate synthase [Staphylococcus aureus 04-02981]
 gi|294824749|gb|EFG41171.1| argininosuccinate synthase [Staphylococcus aureus A9754]
 gi|294969202|gb|EFG45222.1| argininosuccinate synthase [Staphylococcus aureus A8819]
 gi|297177661|gb|EFH36911.1| argininosuccinate synthase [Staphylococcus aureus A8796]
 gi|302332574|gb|ADL22767.1| putative argininosuccinate synthase [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302750789|gb|ADL64966.1| putative argininosuccinate synthase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339848|gb|EFM05792.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312829358|emb|CBX34200.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130458|gb|EFT86445.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197314|gb|EFU27652.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141222|gb|EFW33069.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143279|gb|EFW35069.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313629|gb|AEB88042.1| Argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329726266|gb|EGG62736.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           21189]
 gi|329728162|gb|EGG64601.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|323440883|gb|EGA98591.1| argininosuccinate synthase [Staphylococcus aureus O11]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|282916211|ref|ZP_06323973.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770026|ref|ZP_06342918.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319651|gb|EFB49999.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460173|gb|EFC07263.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           H19]
 gi|323443826|gb|EGB01438.1| argininosuccinate synthase [Staphylococcus aureus O46]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|228910456|ref|ZP_04074271.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 200]
 gi|228849222|gb|EEM94061.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 200]
          Length = 411

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|21282572|ref|NP_645660.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485737|ref|YP_042958.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208404|ref|ZP_06924834.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300912480|ref|ZP_07129923.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|24211483|sp|Q8NXF2|ASSY_STAAW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56748583|sp|Q6GAW5|ASSY_STAAS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|21204010|dbj|BAB94708.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244180|emb|CAG42606.1| putative argininosuccinate synthase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|296887143|gb|EFH26046.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886726|gb|EFK81928.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|303228610|ref|ZP_07315436.1| NAD+ synthase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516702|gb|EFL58618.1| NAD+ synthase [Veillonella atypica ACS-134-V-Col7a]
          Length = 256

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 53/251 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG DSSVVAAL K   G + V+GV +                   D+ DA+ V  
Sbjct: 30  VVGISGGKDSSVVAALCKEALGAERVVGVLMPN-------------DVQSDIDDAKEVVA 76

Query: 82  TINVSHYVFDYEERFR---NAVIVPFASSYAAGETP-LPCVDCN--RTVKFSDLLSVTRQ 135
            + + + + +    +R    A++     S   G T      + N    ++ + L +V + 
Sbjct: 77  HLGIPYMIVNIGNAYRALTEAIVQGEGFSNVTGRTDLARDAEINTPPRLRMATLYAVGQN 136

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L        H  R                +  D   D S                PL ++
Sbjct: 137 L-------PHGARVANTCNGSEDYVGYSTKFGDAAGDFS----------------PLANL 173

Query: 196 KKESVRDLAREMGLDIA--DKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-- 251
             E VR + R + +     DK+ S  +              +       G+I  +  +  
Sbjct: 174 VVEEVRQIGRLLDIPHHLVDKTPSDGLSGQSDEDKLGFTYAVLDRYIRTGEIEDIQTKER 233

Query: 252 -----ILGRHN 257
                 + RH 
Sbjct: 234 IDYLQRINRHK 244


>gi|295692103|ref|YP_003600713.1| gmp synthase (glutamine-hydrolyzing) [Lactobacillus crispatus ST1]
 gi|295030209|emb|CBL49688.1| GMP synthase (Glutamine-hydrolyzing) [Lactobacillus crispatus ST1]
          Length = 516

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G+     
Sbjct: 214 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGNQVMQA 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 271 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEKKRKIIGKEFIE 311

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   D LA G        V + G       +           +    +    
Sbjct: 312 VFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L  ++G+ 
Sbjct: 362 KLIEPLRKLFKDEVRELGEKLGIP 385


>gi|227877995|ref|ZP_03995997.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256849225|ref|ZP_05554658.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047241|ref|ZP_06020199.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-3A-US]
 gi|227862416|gb|EEJ69933.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256714001|gb|EEU28989.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-1A-US]
 gi|260572486|gb|EEX29048.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-3A-US]
          Length = 516

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G+     
Sbjct: 214 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGNQVMQA 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 271 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEKKRKIIGKEFIE 311

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   D LA G        V + G       +           +    +    
Sbjct: 312 VFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L  ++G+ 
Sbjct: 362 KLIEPLRKLFKDEVRELGEKLGIP 385


>gi|15669834|ref|NP_248648.1| hypothetical protein MJ_1638 [Methanocaldococcus jannaschii DSM
           2661]
 gi|38503296|sp|Q59032|Y1638_METJA RecName: Full=Uncharacterized protein MJ1638
 gi|1500538|gb|AAB99659.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 260

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 63/214 (29%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
                 + +DK P   + VVA SGGVDSS  A + K           Q+++ +  S    
Sbjct: 51  EKEFYKISIDKKP---KAVVAFSGGVDSSTSAIIAK-----------QIFDVKAVSCYSK 96

Query: 66  SCCAGQDVYDARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                +   +A+ +   I +S      D EE ++  V   F           PC  C++ 
Sbjct: 97  YIMTDEMRENAKNIAKKIGISLEFVSIDLEEVYKGVVNGKFH----------PCGRCHK- 145

Query: 124 VKFSDLLSVTRQLGADVL------ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V  + ++   +++ A+ +      A G+    R    +D   R  +          S+F 
Sbjct: 146 VIENAVIDYAKKIDAEFVIFGDLLAFGYLALYR----EDEIFRFNL---------PSFFA 192

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
                            + K+  R++ +  G+++
Sbjct: 193 -----------------LTKDEEREILKNNGIEL 209


>gi|283470160|emb|CAQ49371.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|297624396|ref|YP_003705830.1| NAD+ synthetase [Truepera radiovictrix DSM 17093]
 gi|297165576|gb|ADI15287.1| NAD+ synthetase [Truepera radiovictrix DSM 17093]
          Length = 296

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 72/209 (34%), Gaps = 57/209 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVVV +SGG+DS+V A L  R  G + +   L+L                  +  A+ V 
Sbjct: 55  RVVVPLSGGIDSAVTAYLAARAFGPENVHA-LRL---------PYRASDPDSLAHAQLVV 104

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR------TVKFSDLLSVTR 134
           D + +     D  E            +YA     +P V  +R       V+         
Sbjct: 105 DALGLPAETLDITE---------MVDAYAR---LVPDVTPHRLGNVMARVRMIVAFDKAA 152

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL-RFPLG 193
           +LGA  L TG                          + + +F + T           PLG
Sbjct: 153 ELGAVHLGTG-------------------------NKTERFFGYYTWHDVADAAPVSPLG 187

Query: 194 DMKKESVRDLAREMGLD--IADKSDSQDI 220
           D+ K  VR LA  +G+   +  K  S D+
Sbjct: 188 DLFKTQVRALAEHLGVPEAVRRKPPSADL 216


>gi|297617305|ref|YP_003702464.1| Queuosine synthesis [Syntrophothermus lipocalidus DSM 12680]
 gi|297145142|gb|ADI01899.1| Queuosine synthesis [Syntrophothermus lipocalidus DSM 12680]
          Length = 326

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 39/229 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V   SGG+DS +   ++K  G +V+G   +                           
Sbjct: 1   MKAVSLFSGGLDSQLAVCVVKEQGIEVVGAHFK-------------TPFFGGDEHVAEAA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGAD 139
             + +   V D  + +   +  P    Y  G+   PC DC+  + K +  L     +GA 
Sbjct: 48  RNLGIELLVLDRSDEYLEVLKNP---RYGYGKHMNPCTDCHGFMLKHTGHL--MDDIGAK 102

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-------------C 186
            + TG  +  R    +    R++            Y L   + + L              
Sbjct: 103 FIVTGEVLGQRPKSQNKAALRQVEKLSGYEG----YILRPLSAKLLPPTIPELEGWVDRE 158

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
            L    G  +   + +LA + GL+  D       C + Q  +   +++ 
Sbjct: 159 RLLDICGRSRLRQM-ELAEKYGLN--DYPSPAGGCLLTQENFSRRLQKF 204


>gi|75759980|ref|ZP_00740048.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903149|ref|ZP_04067283.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 4222]
 gi|74492538|gb|EAO55686.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228856431|gb|EEN00957.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 4222]
          Length = 411

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|253732683|ref|ZP_04866848.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253729294|gb|EES98023.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|329733968|gb|EGG70290.1| argininosuccinate synthase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|258441530|ref|ZP_05690890.1| argininosuccinate synthase [Staphylococcus aureus A8115]
 gi|282893988|ref|ZP_06302219.1| argininosuccinate synthase [Staphylococcus aureus A8117]
 gi|257852320|gb|EEV76246.1| argininosuccinate synthase [Staphylococcus aureus A8115]
 gi|282763474|gb|EFC03603.1| argininosuccinate synthase [Staphylococcus aureus A8117]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    +   
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDIVYKKAL 50

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  + 
Sbjct: 51  DMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSV 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 GIAHG 115


>gi|308174628|ref|YP_003921333.1| argininosuccinate synthase [Bacillus amyloliquefaciens DSM 7]
 gi|307607492|emb|CBI43863.1| argininosuccinate synthase [Bacillus amyloliquefaciens DSM 7]
 gi|328554554|gb|AEB25046.1| argininosuccinate synthase [Bacillus amyloliquefaciens TA208]
 gi|328912958|gb|AEB64554.1| argininosuccinate synthase [Bacillus amyloliquefaciens LL3]
          Length = 403

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 39/204 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+  GYDV+   L                 G+D+   ++
Sbjct: 3   EQKKVVLAYSGGLDTSVAIKWLQEQGYDVVACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  V+ YV D +E F     +    ++   E   P V   +R +    L+ V  + 
Sbjct: 50  KALEVGAVNSYVIDAKEEFAREYALISMQAHTMYEGKYPLVSALSRPLIAKKLVEVAEKE 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--G 193
            A  +A G                   C       DQ  F  +        ++  P+   
Sbjct: 110 NAVAVAHG-------------------CTGK--GNDQVRFEVSIKSLNPDLEVIAPVREW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   + A   G+ I    DS
Sbjct: 149 QWSREEEIEYAASRGIPIPINLDS 172


>gi|206896303|ref|YP_002246574.1| hypothetical protein COPRO5265_0204 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738920|gb|ACI17998.1| conserved protein [Coprothermobacter proteolyticus DSM 5265]
          Length = 341

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 31/183 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +R +  +SGG+DS + A L+   G +VIG+                     +   AR  
Sbjct: 10  PIRAIALLSGGLDSMLAAKLILDQGIEVIGI--------------SFESPFFNADRARTA 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +    +D  +     +  P    +  G    PC+DC+  +     L +   L A 
Sbjct: 56  AKQLAIPLITWDITDELIKVLKNP---KHGFGRFFNPCIDCHALM-VKKALELLPSLQAQ 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TG  +  R      G    +M    D              + L     P     K  
Sbjct: 112 FIITGEVLYQRPKSQKMGG---LMAVAKDSGAQ------DLILRPLSAKLLPP---TKPE 159

Query: 200 VRD 202
            R+
Sbjct: 160 -RE 161


>gi|218899784|ref|YP_002448195.1| argininosuccinate synthase [Bacillus cereus G9842]
 gi|226729217|sp|B7IK29|ASSY_BACC2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|218542345|gb|ACK94739.1| argininosuccinate synthase [Bacillus cereus G9842]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|154687066|ref|YP_001422227.1| argininosuccinate synthase [Bacillus amyloliquefaciens FZB42]
 gi|166219946|sp|A7Z7M0|ASSY_BACA2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|154352917|gb|ABS74996.1| ArgG [Bacillus amyloliquefaciens FZB42]
          Length = 403

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 39/204 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+  GYDV+   L                 G+D+   ++
Sbjct: 3   EQKKVVLAYSGGLDTSVAIKWLQEQGYDVVACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  V+ YV D +E F     +    ++   E   P V   +R +    L+ V  + 
Sbjct: 50  KALEVGAVNSYVIDAKEEFAREYALISMQAHTMYEGKYPLVSALSRPLIAKKLVEVAEKE 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--G 193
            A  +A G                   C       DQ  F  +        ++  P+   
Sbjct: 110 NAVAVAHG-------------------CTGK--GNDQVRFEVSIKSLNPDLEVIAPVREW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   + A   G+ I    DS
Sbjct: 149 QWSREEEIEYAASRGIPIPINLDS 172


>gi|262374642|ref|ZP_06067915.1| GMP synthase domain-containing protein [Acinetobacter junii SH205]
 gi|262310432|gb|EEY91523.1| GMP synthase domain-containing protein [Acinetobacter junii SH205]
          Length = 522

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 74/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L K   D +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLRKQIGDEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D EERF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEERFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +    +
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPE 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               DL  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFDLVEPLRDLFKDEVRKLGTTLGLP 391


>gi|78223495|ref|YP_385242.1| GMP synthase [Geobacter metallireducens GS-15]
 gi|91206808|sp|Q39TA7|GUAA_GEOMG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78194750|gb|ABB32517.1| GMP synthase (glutamine-hydrolyzing) [Geobacter metallireducens
           GS-15]
          Length = 520

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + RV++ +SGGVDSSV AAL+ R  G  +  V      L+L    +              
Sbjct: 222 NDRVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDNGLLRLSEGDQVMATF--------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + + V     D E+RF  A          AGE+     +  R +     + + 
Sbjct: 273 ------AENLGVKVIRVDAEDRFLTA---------LAGES---DPEKKRKIIGKLFVDIF 314

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +       A  LA G      +        +    +           +          L
Sbjct: 315 EEESNKITDARWLAQGTIYPDVIESAGAKTGKAHNIKSHHN-------VGGLPDYMKLKL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 368 LEPLRELFKDEVRAIGEELGLP 389


>gi|291278885|ref|YP_003495720.1| GMP synthase glutamine-hydrolyzing [Deferribacter desulfuricans
           SSM1]
 gi|290753587|dbj|BAI79964.1| GMP synthase, glutamine-hydrolyzing [Deferribacter desulfuricans
           SSM1]
          Length = 517

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 68/200 (34%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA LL    G ++  V +     RK    +              
Sbjct: 220 DKKVLCALSGGVDSSVVAVLLNEAIGKNLTCVFVNNGLLRKNEAEQVVKTFR-------- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET---PLPCVDCNRTVKFSDLLSVTRQ 135
             D  N++    D EE F  A           G T       +  N  +K         +
Sbjct: 272 --DNFNINLIFVDAEEEFLKA---------LRGVTDPEKKRKIIGNLFIKI--FEREAEK 318

Query: 136 LG-ADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           LG  D LA        I S  + G     +         E+                L  
Sbjct: 319 LGRFDFLAQGTLYPDVIESVSFKGPSATIKTHHNVGGLPEKMNF------------KLIE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 367 PLRELFKDEVRQVGLELGLP 386


>gi|126461244|ref|YP_001042358.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102908|gb|ABN75586.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 514

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ MSGGVDS++ AAL K  G+ V+G TL +      + R                C  +
Sbjct: 76  VIGMSGGVDSALTAALFKAAGWHVVGHTLPIEQDPNETDRGIE------------ACAAL 123

Query: 84  NVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
            + H   D    +  A++      P   S  + ETP      N    ++   L     +L
Sbjct: 124 GIEHRPLDLSGAYEAALVHLGELDPDLLS--SDETPARTRRGNLRARLRMMTLYDQAHRL 181

Query: 137 G 137
           G
Sbjct: 182 G 182


>gi|16079997|ref|NP_390823.1| argininosuccinate synthase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310889|ref|ZP_03592736.1| argininosuccinate synthase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315214|ref|ZP_03597019.1| argininosuccinate synthase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320132|ref|ZP_03601426.1| argininosuccinate synthase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324414|ref|ZP_03605708.1| argininosuccinate synthase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312481|ref|YP_004204768.1| argininosuccinate synthase [Bacillus subtilis BSn5]
 gi|5915700|sp|O34347|ASSY_BACSU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|2293242|gb|AAC00320.1| arginine succinate synthase [Bacillus subtilis]
 gi|2635410|emb|CAB14905.1| argininosuccinate synthase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485373|dbj|BAI86448.1| argininosuccinate synthase [Bacillus subtilis subsp. natto BEST195]
 gi|320018755|gb|ADV93741.1| argininosuccinate synthase [Bacillus subtilis BSn5]
          Length = 403

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 39/204 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+  GY+VI   L                 G+D+   ++
Sbjct: 3   EQKKVVLAYSGGLDTSVAIKWLQEQGYNVIACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +   + YV D +E F     +    ++   E   P V   +R +    L+ +  + 
Sbjct: 50  KALEVGATNSYVIDAKEEFAQDYALISLQAHTMYEGKYPLVSALSRPLIAKKLVEIAEKE 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--G 193
            A  +A G                   C       DQ  F  +        ++  P+   
Sbjct: 110 DAQAIAHG-------------------CTGK--GNDQVRFEVSIKSLNPDLEVIAPVREW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   + A   G+ I    DS
Sbjct: 149 QWSREEEIEYAASRGIPIPINLDS 172


>gi|220932738|ref|YP_002509646.1| NH(3)-dependent NAD(+) synthetase [Halothermothrix orenii H 168]
 gi|219994048|gb|ACL70651.1| NH(3)-dependent NAD(+) synthetase [Halothermothrix orenii H 168]
          Length = 247

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 48/192 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV MSGG+DS+V + L K+   +   G+ +  ++S             +D+ DAR V D 
Sbjct: 30  VVGMSGGIDSAVTSVLCKKAFKENTLGIIMPCHSSD------------KDLEDARLVADA 77

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGET---PLPCVDCNRTVKFSDLLSVTRQLGAD 139
            ++ + V D        V   F     A       +   +    ++ + L     +    
Sbjct: 78  FDIKYIVKDLGP-----VFDNFIELLGADSQTGDDMAVANIKPRLRMTTLYYYAARNNYL 132

Query: 140 VLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           V+ T ++    + Y    G     +                           PLG + K 
Sbjct: 133 VVGTDNWSELTVGYFTKYGDGGVDIA--------------------------PLGRLVKT 166

Query: 199 SVRDLAREMGLD 210
            VR+LAR +G+ 
Sbjct: 167 EVRELARYLGIP 178


>gi|82750577|ref|YP_416318.1| argininosuccinate synthase [Staphylococcus aureus RF122]
 gi|119361328|sp|Q2YWS4|ASSY_STAAB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|82656108|emb|CAI80517.1| argininosuccinate synthase [Staphylococcus aureus RF122]
          Length = 401

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDV+   L +   +                  ++  D
Sbjct: 4   KIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVY------------KKALD 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           T  +  ++ D  + F +  +          E   P     +R +    L+ +  +  +  
Sbjct: 52  TGAIECHIIDATKEFSDEYVSYAIKGNLMYENAYPLFSALSRPLIAKKLVEIAEKTNSVG 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|170290101|ref|YP_001736917.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174181|gb|ACB07234.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 260

 Score = 69.0 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 53/243 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++A+SGG+DSS +AAL K+  G   I VT                   +++  ARRV +
Sbjct: 16  VIIALSGGLDSSTLAALCKKLLGDKAIAVT-----------VASELQPEEEIEGARRVAE 64

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + +                  A   P  C  C + + F  +  +  +LG   +
Sbjct: 65  EIGIRHILIEVS----------LLKEEVARNGPDRCYHCKKAM-FRRIRELAEELGVREI 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G         G    R   +  P                         LG  +KE +R
Sbjct: 114 FDGTNASDSWRPGIGALRELGIRSPWAE----------------------LG-FRKEEIR 150

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQIL---GRH 256
           ++AR +GL +++K+     C   +  + + +  +R+      E  I  L G  +     H
Sbjct: 151 EIARNLGLSVSEKAP--QSCLATRIPFGERITEERLMRIWRAEKLIRELTGVKILRVRDH 208

Query: 257 NGI 259
            GI
Sbjct: 209 GGI 211


>gi|262376896|ref|ZP_06070123.1| GMP synthase domain-containing protein [Acinetobacter lwoffii
           SH145]
 gi|262308241|gb|EEY89377.1| GMP synthase domain-containing protein [Acinetobacter lwoffii
           SH145]
          Length = 522

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   D +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLRQQIGDEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   D + +     D EERF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFADNMGIRVIRADAEERFLTA---------LAGEV---DPEAKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
              +      R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIAVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPA 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|315636879|ref|ZP_07892103.1| GMP synthase [Arcobacter butzleri JV22]
 gi|315478709|gb|EFU69418.1| GMP synthase [Arcobacter butzleri JV22]
          Length = 511

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSVVA LL    G  VI V +     R   + +              
Sbjct: 215 NKKVLCAVSGGVDSSVVATLLAEAIGEQVIPVFVDNGLLRANEREQVETMF--------- 265

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +  V+    D  E F +    V  P       GET +   D          +   + 
Sbjct: 266 --KSRGVNLITVDASETFLSKLAGVTDPEKKRKIIGETFIEVFD----------VEAKKH 313

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G + LA G  + + +      K      +           +         +L  PL ++
Sbjct: 314 SGIEFLAQG-TLYTDVIESVSVKGPSKTIKSHHN-------VGGLPDWMKFELIEPLREI 365

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 366 FKDEVRALGLELGLP 380


>gi|157737167|ref|YP_001489850.1| GMP synthase [Arcobacter butzleri RM4018]
 gi|226738379|sp|A8ETA7|GUAA_ARCB4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157699021|gb|ABV67181.1| GMP synthase [Arcobacter butzleri RM4018]
          Length = 511

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSVVA LL    G  VI V +     R   + +              
Sbjct: 215 NKKVLCAVSGGVDSSVVATLLAEAIGEQVIPVFVDNGLLRANEREQVETMF--------- 265

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +  V+    D  E F +    V  P       GET +   D          +   + 
Sbjct: 266 --KSRGVNLITVDASETFLSKLAGVTDPEKKRKIIGETFIEVFD----------VEAKKH 313

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G + LA G  + + +      K      +           +         +L  PL ++
Sbjct: 314 SGIEFLAQG-TLYTDVIESVSVKGPSKTIKSHHN-------VGGLPDWMKFELIEPLREI 365

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 366 FKDEVRALGLELGLP 380


>gi|68474508|ref|XP_718627.1| hypothetical protein CaO19.7469 [Candida albicans SC5314]
 gi|46440405|gb|EAK99711.1| hypothetical protein CaO19.7469 [Candida albicans SC5314]
          Length = 493

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 27/146 (18%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T   + + ++N    +V +A SGG+D+SV+ A L   GY+VI   L              
Sbjct: 67  THTYTQNTNRNMSKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FLANI----------- 114

Query: 67  CCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCV 118
               +D  +A +    I      V D  + F   V  P   S       Y  G +    V
Sbjct: 115 -GQEEDFEEAEKKALAIGATKFVVVDVRKEFVEKVCFPAIQSNAIYENVYLLGTSLARPV 173

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATG 144
                +K      V  + G   ++ G
Sbjct: 174 IAQAQIK------VAEENGCFAVSHG 193


>gi|78042656|ref|YP_360115.1| hypothetical protein CHY_1281 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994771|gb|ABB13670.1| conserved hypothetical protein TIGR00268 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 275

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGGVDS+    LLK    DV+G      ++  A     S     ++ +A+++  T
Sbjct: 22  VVIAFSGGVDST---FLLKVAK-DVLG------DNVLAVTATSSTYPAIELEEAKKLAQT 71

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V H + + EE      +            P  C  C + + FS LL V ++ G   + 
Sbjct: 72  FGVRHLIIESEELDIKEFVN---------NPPNRCYFCKKEL-FSKLLQVAKKEGFSFVL 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G          D    R  M    +L                  +R PL +  +KK+ +
Sbjct: 122 DGSNA------DDLNDFRPGMEAAKELG-----------------VRSPLKEAGLKKDDI 158

Query: 201 RDLAREMGLDIADKS 215
           R L++EMGL   +K 
Sbjct: 159 RYLSKEMGLPTWNKP 173


>gi|326793643|ref|YP_004311463.1| GMP synthase (glutamine-hydrolyzing) [Marinomonas mediterranea
           MMB-1]
 gi|326544407|gb|ADZ89627.1| GMP synthase (glutamine-hydrolyzing) [Marinomonas mediterranea
           MMB-1]
          Length = 525

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + +   + +V++A+SGGVDSSVVAALL +  G  +  V      L+L    +        
Sbjct: 221 MREQVGNKKVLLALSGGVDSSVVAALLHKAIGDKLTCVFVDNGLLRLDEGDQVMSMF--- 277

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KF 126
                        + + V+    D E+ F   +                 +  N  +  F
Sbjct: 278 ------------AENMGVNVIRVDAEDLFLGKLAGVADPEQKRK------IIGNTFIDIF 319

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            +     +    D LA G      +        +  + +           +    +    
Sbjct: 320 DE--EAAKLTDVDFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEDMQF 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  PL ++ K+ VR L  E+GL 
Sbjct: 371 ELVEPLRELFKDEVRKLGVELGLP 394


>gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic
           archaeon RC-I]
          Length = 308

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 88/280 (31%), Gaps = 54/280 (19%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT----LQLYNSRKASKR 63
           R+    + K      + VAMSGG DS+V  ++L      V   T    ++          
Sbjct: 37  RMRKERMAKP--GDHIAVAMSGGKDSAVTLSIL------VDTFTTRSNIKFSAITVDEGI 88

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNR 122
           +G     + +  A+ +CD + V HYV  ++E      I                C  C  
Sbjct: 89  EGY--RNESIPYAKELCDRLGVPHYVVSFKEE-----IGHTLDDILSRERKEASCTYCGV 141

Query: 123 TVKFSDLLSVTRQLGADVLATGHY----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
             + + L    R++GA+ LATGH      +  L    +G   R + R     R Q   + 
Sbjct: 142 FRR-TLLNRKAREIGANKLATGHNLDDEAQVVLLNVMNGDVER-LARLR-PSRAQEGLIP 198

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
                       PL D+ ++ +   A    L           C      +          
Sbjct: 199 RIK---------PLIDVPEKEIALYAFLKKLPFY-----MGECPYTSESFR--------- 235

Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPL 278
               G+I  +      RH G     +     +   + E  
Sbjct: 236 ----GEIKDMLNDFEARHPGTKYSVLSGFENMIDCLKEKY 271


>gi|268607984|ref|ZP_06141715.1| GMP synthase [Ruminococcus flavefaciens FD-1]
          Length = 516

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 43/221 (19%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLY 55
           V+ +        L +   D +V++ +SGGVDSSV A LL R  G  +  V      ++  
Sbjct: 196 VMDDFIETTVAKLREQIGDKKVILGLSGGVDSSVAAGLLSRAVGKQLTCVFVDQGLMR-K 254

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
           +     +   +                 +++    + +++F  A           G T  
Sbjct: 255 DEGDFVEETFT--------------KLFDMNFVRVNCKDQFLTA---------LNGVT-- 289

Query: 116 PCVDCNRTVK----FSDLLSVTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDL 169
              +  R +     ++   +  R+ G D    G + +  +Y    + GK  +       +
Sbjct: 290 -DPEQKRKIIGTEFYNVFWNKIREQGTD----GFFAQGTIYPDRIESGKGNQSGHGSTAV 344

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +     +      +      PLGD+ K+ VR +  ++G+ 
Sbjct: 345 IKTHHNMVKMPDDIKFAGTIEPLGDLFKDEVRRVGEKLGIP 385


>gi|296332078|ref|ZP_06874542.1| argininosuccinate synthase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675527|ref|YP_003867199.1| argininosuccinate synthase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150849|gb|EFG91734.1| argininosuccinate synthase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413771|gb|ADM38890.1| argininosuccinate synthase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 403

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+  GY+VI   L                 G+D+   ++
Sbjct: 3   EQKKVVLAYSGGLDTSVAIKWLQEQGYNVIACCL-------------DVGEGKDLAFVQQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +   + YV D +E F     +    ++   E   P V   +R +    L+ +  + 
Sbjct: 50  KALEVGATNSYVIDAKEEFAQDYALISLQAHTMYEGKYPLVSALSRPLIAKKLVEIAEKE 109

Query: 137 GADVLATG 144
            A  +A G
Sbjct: 110 DAQAIAHG 117


>gi|307729357|ref|YP_003906581.1| GMP synthase large subunit [Burkholderia sp. CCGE1003]
 gi|307583892|gb|ADN57290.1| GMP synthase, large subunit [Burkholderia sp. CCGE1003]
          Length = 527

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 43/203 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AALL R  G  +  V                      + +A +
Sbjct: 222 NEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V     D + V     D  + F              G T     +  R +  ++ + V  
Sbjct: 268 VMATFADHLGVKVIHVDASDVFLRK---------LEGVT---DPEAKRKIIGAEFVEVFQ 315

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +     GK+     +           +    +     L 
Sbjct: 316 TEAGKLTDAKWLAQGTIYPDVIESAGKGKKATQTIKSHHN-------VGGLPETLNLKLL 368

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL ++ K+ VR+L  ++GL  A
Sbjct: 369 EPLRELFKDEVRELGVKLGLPPA 391


>gi|119872114|ref|YP_930121.1| GMP synthase [Pyrobaculum islandicum DSM 4184]
 gi|119673522|gb|ABL87778.1| GMP synthase (glutamine-hydrolyzing) [Pyrobaculum islandicum DSM
           4184]
          Length = 505

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 32/201 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K  KD  +++ +SGGVDS+VVA L          V + +    KA           +
Sbjct: 203 EIRKEVKDGDIIIGVSGGVDSTVVAVL----------VHMAVGERAKAVFIDHGLFREGE 252

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAV--IVPFASSYAA-GETPLPCVDCNRTVKFSDL 129
                ++ +++ +  Y  D  ERF   +  +          GET    V      KF + 
Sbjct: 253 PEQVVKLLNSLGIKVYYVDARERFLKRLEGVSDCEEKRRIIGETFAE-VFTETLSKFPE- 310

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                      LA G      +  G          +  D  +   + +    +     L 
Sbjct: 311 --------VKYLAQGTLYPDVIESGA--------VKGADKIKSH-HNVGGLPRWFNLKLI 353

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL +  K+ VR LAR +GL 
Sbjct: 354 EPLREFYKDEVRKLARALGLP 374


>gi|148554242|ref|YP_001261824.1| GMP synthase [Sphingomonas wittichii RW1]
 gi|148499432|gb|ABQ67686.1| GMP synthase (glutamine-hydrolyzing) [Sphingomonas wittichii RW1]
          Length = 530

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 74/219 (33%), Gaps = 43/219 (19%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQL 54
           M    AT++   ++ +   D RV+  +SGGVDS+V A L+    G  +  V      +++
Sbjct: 215 MAEFRATKI--EEIRQQVGDGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRM 272

Query: 55  YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAG 111
             + +                     +   +     + E  F N    V  P A     G
Sbjct: 273 GEADQVVGLFR---------------EHYGIPLVHVNAETLFLNGLKGVTDPEAKRKFIG 317

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
           +T +   +              +  GAD LA G      +          +  +      
Sbjct: 318 KTFIEVFEA----------EAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-- 365

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +    ++    L  PL ++ K+ VR L RE+GL 
Sbjct: 366 -----VGGLPERMNMKLVEPLRELFKDEVRALGRELGLP 399


>gi|30023975|ref|NP_266280.2| argininosuccinate synthase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 397

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 3   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIADCMDVGEGKDLNFIHDKALQVGAVESV--- 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +E F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 60  ---------VLDCKEEFAKIFVGAALKGNLMYENKYPLVSALSRPLIAQKLVEVAKEKGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|13626098|sp|P57799|ASSY_LACLA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|12722971|gb|AAK04222.1|AE006250_9 argininosuccinate synthase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 398

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L   G+DVI   + +   +  +           V      
Sbjct: 4   NKKIVLAYSGGLDTSVAVKWLTDKGFDVIADCMDVGEGKDLNFIHDKALQVGAVESV--- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +E F    +          E   P V   +R +    L+ V ++ GA
Sbjct: 61  ---------VLDCKEEFAKIFVGAALKGNLMYENKYPLVSALSRPLIAQKLVEVAKEKGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAIAHG 117


>gi|170692169|ref|ZP_02883332.1| GMP synthase, large subunit [Burkholderia graminis C4D1M]
 gi|170142599|gb|EDT10764.1| GMP synthase, large subunit [Burkholderia graminis C4D1M]
          Length = 527

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 43/203 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AALL R  G  +  V                      + +A +
Sbjct: 222 NEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V     D + V     D  + F              G T     +  R +  ++ + V  
Sbjct: 268 VMATFADHLGVKVIHVDASDVFLRK---------LEGVT---DPEAKRKIIGAEFVEVFQ 315

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +     GK+     +           +    +     L 
Sbjct: 316 TEAGKLTDAKWLAQGTIYPDVIESAGKGKKATQTIKSHHN-------VGGLPETLNLKLL 368

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL ++ K+ VR+L  ++GL  A
Sbjct: 369 EPLRELFKDEVRELGVKLGLPPA 391


>gi|306826065|ref|ZP_07459401.1| argininosuccinate synthase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431781|gb|EFM34761.1| argininosuccinate synthase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 398

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|331267207|ref|YP_004326837.1| argininosuccinate synthase [Streptococcus oralis Uo5]
 gi|326683879|emb|CBZ01497.1| argininosuccinate synthase [Streptococcus oralis Uo5]
          Length = 398

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|315612255|ref|ZP_07887169.1| argininosuccinate synthase [Streptococcus sanguinis ATCC 49296]
 gi|315315648|gb|EFU63686.1| argininosuccinate synthase [Streptococcus sanguinis ATCC 49296]
          Length = 398

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|323486209|ref|ZP_08091537.1| hypothetical protein HMPREF9474_03288 [Clostridium symbiosum
           WAL-14163]
 gi|323400427|gb|EGA92797.1| hypothetical protein HMPREF9474_03288 [Clostridium symbiosum
           WAL-14163]
          Length = 275

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 84/244 (34%), Gaps = 50/244 (20%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG--YD--VIGVTLQLYNSRKA 60
              +LN + +D+  K   V +A SGGVDSS++  +   +G  Y   V  VT         
Sbjct: 9   NTDKLNQM-MDEYGKGP-VCIAFSGGVDSSLLLKIACDNGRKYKTPVYAVTF-------N 59

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +    +C    D+  A++V   +   H V   +E                   P  C  C
Sbjct: 60  TMLHPAC----DLDTAKKVARELGAEHVVIQVDELEMEG---------MRDNPPERCYLC 106

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            + + F+ LL   R+ G   +  G          DD    R   R +         L   
Sbjct: 107 KKHL-FTALLDFAREKGITCILDG-------TNEDDTHVYRPGIRALKE-------LGII 151

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           +   LC        + K  V++L+   G+ +A +  +   C   +  Y   +        
Sbjct: 152 SPLALCH-------ITKRQVKELSSAFGISVASRPSTP--CMATRLPYGTKLDYEILRKI 202

Query: 241 LEGD 244
            +G+
Sbjct: 203 EKGE 206


>gi|323526462|ref|YP_004228615.1| GMP synthase large subunit [Burkholderia sp. CCGE1001]
 gi|323383464|gb|ADX55555.1| GMP synthase, large subunit [Burkholderia sp. CCGE1001]
          Length = 527

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 43/203 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AALL R  G  +  V                      + +A +
Sbjct: 222 NEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V     D + V     D  + F              G T     +  R +  ++ + V  
Sbjct: 268 VMATFADHLGVKVIHVDASDVFLRK---------LEGVT---DPEAKRKIIGAEFVEVFQ 315

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +     GK+     +           +    +     L 
Sbjct: 316 TEAGKLTDAKWLAQGTIYPDVIESAGKGKKATQTIKSHHN-------VGGLPETLNLKLL 368

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL ++ K+ VR+L  ++GL  A
Sbjct: 369 EPLRELFKDEVRELGVKLGLPPA 391


>gi|71064590|ref|YP_263317.1| GMP synthase [Psychrobacter arcticus 273-4]
 gi|91206823|sp|Q4FVS5|GUAA_PSYA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71037575|gb|AAZ17883.1| GMP synthase (glutamine-hydrolyzing) [Psychrobacter arcticus 273-4]
          Length = 536

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNS 57
                +    L K   D +V++ +SGGVDSSVVAALL +  G  +  V      L+L+  
Sbjct: 216 DNIIDMRIEQLKKQIGDKQVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDTGLLRLHEG 275

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETP 114
            +                 +   + + V     D EE F  A+             G+T 
Sbjct: 276 DQVM---------------QIFAENMGVKVIRVDAEELFLTALAGESDPEAKRKIIGKTF 320

Query: 115 LPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
              V  N      ++   +     + LA G      +      + +  + +         
Sbjct: 321 -IDVFANSA---REISEQSDGKVIEFLAQGTIYPDVIESAKSHQGKAHVIKSHHN----- 371

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +         +L  PL D+ K+ VR L   +GL 
Sbjct: 372 --VGGLPDDLAFELVEPLRDLFKDEVRKLGITLGLP 405


>gi|293364415|ref|ZP_06611141.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
 gi|307702620|ref|ZP_07639572.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
 gi|291317261|gb|EFE57688.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
 gi|307623736|gb|EFO02721.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037]
          Length = 398

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|238898980|ref|YP_002924662.1| GMP synthetase (glutamine aminotransferase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259647684|sp|C4K7H1|GUAA_HAMD5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|229466740|gb|ACQ68514.1| GMP synthetase (glutamine aminotransferase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 525

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 77/211 (36%), Gaps = 45/211 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L     D +V++ +SGGVDS+V A LL R  G  +  V +                   
Sbjct: 220 ELKDQIGDDQVILGLSGGVDSAVTAILLHRAIGKSLTCVFVDN--------------GLL 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKF 126
            + ++++V   +N+      ++++F   +I       F ++    + P       R V  
Sbjct: 266 RLNESQQV---LNI------FQDQFGLNIIHVSAANRFMNALKGIQDPE----KKRKVIG 312

Query: 127 SDLLS-----VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              +        +Q G   LA G      +     G  +  + +           +    
Sbjct: 313 RVFVDIFDEQAAKQKGVKWLAQGTIYTDLVESAASGTAKSHLIKSHHN-------VAGLP 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
           ++    L  PL ++ K+ VR L  E+GL  A
Sbjct: 366 KEMKLGLIEPLKELFKDEVRQLGLELGLPNA 396


>gi|322375115|ref|ZP_08049629.1| argininosuccinate synthase [Streptococcus sp. C300]
 gi|321280615|gb|EFX57654.1| argininosuccinate synthase [Streptococcus sp. C300]
          Length = 398

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|319651841|ref|ZP_08005966.1| argininosuccinate synthase [Bacillus sp. 2_A_57_CT2]
 gi|317396493|gb|EFV77206.1| argininosuccinate synthase [Bacillus sp. 2_A_57_CT2]
          Length = 402

 Score = 68.6 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VV+A SGG+D+SV    L+  GY V+   L                 G+D+   ++
Sbjct: 2   SQNKVVLAYSGGLDTSVAVKWLQDQGYAVVACCL-------------DVGEGKDLNFIQK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              T+  V  YV D +E F N   +    ++A  E   P V   +R +    L+ V  + 
Sbjct: 49  KALTVGAVQSYVIDAKEEFANEYALIALQAHALYENKYPLVSALSRPLIAKKLVEVAEKE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GAVAVAHG 116


>gi|270291925|ref|ZP_06198140.1| argininosuccinate synthase [Streptococcus sp. M143]
 gi|270279453|gb|EFA25295.1| argininosuccinate synthase [Streptococcus sp. M143]
          Length = 398

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D +E F N  ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|294055884|ref|YP_003549542.1| GMP synthase, large subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293615217|gb|ADE55372.1| GMP synthase, large subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 515

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 40/201 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV AAL+ +  G  +  V      L+L+   +  K  G        
Sbjct: 214 DEHVILGLSGGVDSSVAAALIHKAIGRQLTCVFVDNGLLRLHEREQVEKLYG-------- 265

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                  D  ++   V D  + F + +             G T +          F + +
Sbjct: 266 -------DHFDLDVRVADKRKLFLDRLADVSDPEQKRKIIGNTFVEV--------FDEAV 310

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +  +  G    LA G      +           + +           +    ++    L 
Sbjct: 311 NELKSSGNYTFLAQGTLYPDVIESVAIDGNPAALIKSHHN-------VGGLPEKMNLKLL 363

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR+L  ++GL 
Sbjct: 364 EPLRELFKDEVRELGTQLGLP 384


>gi|152977001|ref|YP_001376518.1| argininosuccinate synthase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189046380|sp|A7GTR5|ASSY_BACCN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|152025753|gb|ABS23523.1| Argininosuccinate synthase [Bacillus cytotoxicus NVH 391-98]
          Length = 401

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGEDLEFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +     +   E   P V   +R +    L+ +    
Sbjct: 49  KALSVGAIKSYMIDVQEEFMNEYALVALQGHTLYEGKYPLVSALSRPLIAKKLVEIAELE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GASAVAHG 116


>gi|239828037|ref|YP_002950661.1| argininosuccinate synthase [Geobacillus sp. WCH70]
 gi|259585361|sp|C5D679|ASSY_GEOSW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|239808330|gb|ACS25395.1| argininosuccinate synthase [Geobacillus sp. WCH70]
          Length = 402

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 39/203 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKLVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D +E F +   +    ++A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAIKSYVIDVKEEFADEYALIALQAHALYEGKYPLVSALSRPLIAKKLVEIAELEG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--GD 194
           A  +A G                   C       DQ  F  +        ++  P+    
Sbjct: 110 AVAVAHG-------------------CTGK--GNDQVRFEVSIKALNPNLEVIAPVREWS 148

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
             +E   + A++ G+ I    DS
Sbjct: 149 WSREEEIEYAKKHGIPIPVDLDS 171


>gi|94266278|ref|ZP_01289983.1| Glutamine amidotransferase class-I:GMP synthase-like [delta
           proteobacterium MLMS-1]
 gi|93453129|gb|EAT03600.1| Glutamine amidotransferase class-I:GMP synthase-like [delta
           proteobacterium MLMS-1]
          Length = 518

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RVV+ +SGGVDSSV AAL+ R  G  ++ V      L+L    +              
Sbjct: 220 DDRVVLGLSGGVDSSVAAALIHRAIGEQLVCVFVDTGLLRLGEGDQVMATF--------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + + V     D EERF  A+                 V  N  +  +      
Sbjct: 271 ------AENMGVKVIRVDAEERFMGALAGVEDPEAKRR------VIGNMFI--TIFEEAA 316

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +L     LA G      +        +    +           +    +Q    L  PL
Sbjct: 317 GELANTHWLAQGTIYPDVIESAGGKTGKAQNIKSHHN-------VGGLPEQMQLKLLEPL 369

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 370 RELFKDEVRAIGDELGLP 387


>gi|300022358|ref|YP_003754969.1| GMP synthase, large subunit [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524179|gb|ADJ22648.1| GMP synthase, large subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 515

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 50/233 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + RV+  +SGGVDS+V A L+    G  +  V      ++L  + +              
Sbjct: 217 NGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRLGEADEVVGLFR-------- 268

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D  N+     D  E+F  A         +  ET    +  +         +  
Sbjct: 269 -------DHYNIPLVHVDASEQFLTA-----LDGVSDPETKRKTIGKHF---IDVFEAEA 313

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++ GAD LA G      +          +  +           +    ++    L  PL
Sbjct: 314 KKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMHMKLVEPL 366

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            ++ K+ VR L RE+GL  A         FV +  +          I + G+I
Sbjct: 367 RELFKDEVRALGRELGLPEA---------FVGRHPFPG----PGLAIRIPGEI 406


>gi|154149314|ref|YP_001407132.1| thiamine biosynthesis protein:ExsB [Campylobacter hominis ATCC
           BAA-381]
 gi|153805323|gb|ABS52330.1| thiamine biosynthesis protein:ExsB [Campylobacter hominis ATCC
           BAA-381]
          Length = 327

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 110/327 (33%), Gaps = 56/327 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS + A ++   G +V  + + +    K  K +           ARR  
Sbjct: 1   MKALALFSGGLDSMLAAKIISDMGVEVTALHIDIGFGSKDDKSEIL---------ARR-A 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                   + D  E +   V+  F+  Y  G+   PC+DC+  + F   L+   + GAD 
Sbjct: 51  GVAGADFAIIDVREEYLKNVL--FSPKYGYGKHFNPCIDCHGFM-FRTALNSLARFGADF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-CDLRFP-----LG- 193
           + TG  +  R          ++     D              + L   L  P     LG 
Sbjct: 108 IITGEVLGQRPMSQRSAAINQVNHLSGD---------SDLIVRPLCAKLLSPSRPEILGW 158

Query: 194 -DMKK-------ESVR--DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            D +K         VR  +LA++ G +  +       C +    + + +K       +E 
Sbjct: 159 IDREKLLDISGRSRVRQMELAKKFGFNDFETP--AGGCLLTLENFSNKIKDALKFEKIE- 215

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303
            +        GRH             L +  G  + V   +  ++++ +           
Sbjct: 216 CVKDAEILKFGRH-------------LRLFGGAKMVVGRNEDENNKLEMINNPK-FTKID 261

Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKI 330
           ++ +I      L + A  +      KI
Sbjct: 262 FIDDIVGASSFLIKTAGTEDKNLAAKI 288


>gi|110669560|ref|YP_659371.1| argininosuccinate synthase [Haloquadratum walsbyi DSM 16790]
 gi|119361280|sp|Q18E36|ASSY_HALWD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|109627307|emb|CAJ53797.1| argininosuccinate synthase [Haloquadratum walsbyi DSM 16790]
          Length = 397

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 35/198 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RV +A SGG+D++V  +LLK + GYD VIGVT                    +  +A+ 
Sbjct: 2   TRVALAFSGGLDTTVCVSLLKEEYGYDEVIGVT------------VDVGQPATEFEEAQA 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D   +  +V D    F +       ++      PL      R +    ++SV +    
Sbjct: 50  TADAHGIDLHVVDATAEFVDLCFDSVRANATYQGYPLGTALA-RPIIAESIVSVAKAENC 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G         G+D  R   + R  DL       +    + +L        + +  
Sbjct: 109 DALAHG-----CTGKGNDQLRFEAVWRNSDLT-----VIAPIRELELTR------EWE-- 150

Query: 199 SVRDLAREMGLDIADKSD 216
             ++ A E  L +   +D
Sbjct: 151 --QEYAAEHNLPVQAGND 166


>gi|152990536|ref|YP_001356258.1| ExsB family transcriptional regulator [Nitratiruptor sp. SB155-2]
 gi|189038929|sp|A6Q342|QUEC_NITSB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|151422397|dbj|BAF69901.1| transcriptional regulator, ExsB family [Nitratiruptor sp. SB155-2]
          Length = 220

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 38/213 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ VV +SGG+DSS+ A + K+DGY++I V              G     +++   R + 
Sbjct: 1   MKAVVILSGGMDSSITAYMAKKDGYEIIAVHF----------NYGQRTEQKELEAFRAIA 50

Query: 81  DTINVSHYVFDYEERFRNAV-----IVPFASSYAAGETPLPCVDCNRTVKF--SDLL--- 130
             +N   Y  D    F   +     I    +    G  P   V     V F     L   
Sbjct: 51  GELNAKTYEIDL--PFFEQIGASALIDTNIAIPKQGIEPGIPV---TYVPFRNGIFLSVA 105

Query: 131 -SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            ++  + GAD +  G        V +D       CR   +++ +S     T  +    ++
Sbjct: 106 AAIAEKEGADSIYIG-------VVEEDSSGYPD-CREDFIQKMESAINAGTKPETDIKIK 157

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
            PL  ++KE +     ++GL +    +    C+
Sbjct: 158 TPLIHLRKEDIV----QLGLSLGVPLEKTWSCY 186


>gi|75676328|ref|YP_318749.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrobacter winogradskyi Nb-255]
 gi|91206813|sp|Q3SQP4|GUAA_NITWN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|74421198|gb|ABA05397.1| GMP synthase (glutamine-hydrolyzing) [Nitrobacter winogradskyi
           Nb-255]
          Length = 535

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 79/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDSSV A L+    G  +  V     +     K +G        +    
Sbjct: 237 KGRVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGMLRKDEGKTVVDLFRH---- 289

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
                N+     D  ++F +           AG T     +  R       + V     +
Sbjct: 290 ---HYNIPLIHVDASKKFLSE---------LAGVT---DPEAKRKTIGRLFIDVFEAEAK 334

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GAD LA G      +          +  +           +     +    L  PL 
Sbjct: 335 KIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMNMKLVEPLR 387

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL         +I FV +  +         G+A+   G+I
Sbjct: 388 ELFKDEVRALGRELGLP--------EI-FVGRHPF------PGPGLAIRCPGEI 426


>gi|50083437|ref|YP_044947.1| GMP synthase [Acinetobacter sp. ADP1]
 gi|81393985|sp|Q6FFN2|GUAA_ACIAD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49529413|emb|CAG67125.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter sp.
           ADP1]
          Length = 550

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 72/208 (34%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L     D +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 241 LRVEQLRAQIGDEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 297

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   D + +     D EERF  A          AGE      +  R +   
Sbjct: 298 VM-------QMFADNMGIRVIRADAEERFLTA---------LAGEV---DPEKKRKIIGR 338

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 339 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 391

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 392 DLEFELVEPLRDLFKDEVRKLGTTLGLP 419


>gi|88813489|ref|ZP_01128724.1| GMP synthase [Nitrococcus mobilis Nb-231]
 gi|88789279|gb|EAR20411.1| GMP synthase [Nitrococcus mobilis Nb-231]
          Length = 525

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++      +G+               
Sbjct: 230 VLLGLSGGVDSSVVAALLHQAIGEQLTCVF---VDNGLLRLNEGAQVMATF-------AR 279

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
            + V     + EERF      V+ P       G                       +L G
Sbjct: 280 HMGVRVIHVNAEERFLTRLAGVVDPERKRKLIGRIF-----------IDVFDEQAGKLDG 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL  + K
Sbjct: 329 VKWLAQGTIYPDVIESAGAKTGKARLIKSHHN-------VGGLPERMNLRLLEPLRSLFK 381

Query: 198 ESVRDLAREMGLDIA 212
           + VR +  E+GL   
Sbjct: 382 DEVRCIGLELGLPTE 396


>gi|262371371|ref|ZP_06064689.1| GMP synthetase [Acinetobacter johnsonii SH046]
 gi|262313708|gb|EEY94757.1| GMP synthetase [Acinetobacter johnsonii SH046]
          Length = 522

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 71/208 (34%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   D +V++ +SGGVDSSVVAALL R  G  +  V                 
Sbjct: 213 LRVEQLRQQIGDQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF--------VDNGLLRL 264

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
             G+ V D       + +     D EERF  A          AGE      +  R +   
Sbjct: 265 NEGEQVMD--MFAKNMGIRVIRADAEERFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G + LA G      +        +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVNFLAQGTIYPDVIESAATKNGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  P+ D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPIRDLFKDEVRRLGTTLGLP 391


>gi|315453947|ref|YP_004074217.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter felis ATCC
           49179]
 gi|315132999|emb|CBY83627.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter felis ATCC
           49179]
          Length = 514

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 36/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV+ A+SGGVDSSVVAAL    LK    +V+ V              G   AG+    AR
Sbjct: 217 RVLCAVSGGVDSSVVAALCARALKEQ-VEVVFV------------DHGLLRAGERDQVAR 263

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              D + +  +V D ++ F +    V+ P       G   +   +            +++
Sbjct: 264 MFAD-LQIPLHVLDAQDLFLSRLKGVVEPEQKRQIIGHAFIEVFEQKAQ-------ELSK 315

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           Q     LA G  +   +      K    + +           +    ++    L  PL +
Sbjct: 316 QGSIKWLAQG-TLYPDVIESVSAKGPSAVIKSHHN-------VGGLPEKMNLKLLEPLRE 367

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L   +GL 
Sbjct: 368 LFKDEVRALGARLGLP 383


>gi|312880157|ref|ZP_07739957.1| NH(3)-dependent NAD(+) synthetase [Aminomonas paucivorans DSM
           12260]
 gi|310783448|gb|EFQ23846.1| NH(3)-dependent NAD(+) synthetase [Aminomonas paucivorans DSM
           12260]
          Length = 250

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 46/192 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGGVDS+VVAALL+R      G        R  +          D   A  V   +
Sbjct: 33  IVGLSGGVDSAVVAALLRR----CFG------RDRMLAVLLPCHSQPVDAEHAMLVARAL 82

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-----TVKFSDLLSVTRQLGA 138
           ++     D              +S  A  +P P    +R      ++ + L ++ + LG 
Sbjct: 83  DLPTRTVDLGPTH-----DALLASLEAA-SPEPLSPLSRANLKPRLRMTALYALAQTLG- 135

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L  G   R+ L  G   K         D   D                  PLG++ K 
Sbjct: 136 -YLVCGTGNRAELAYGYFTKH-------GDSGVD----------------LLPLGNLLKH 171

Query: 199 SVRDLAREMGLD 210
            V +LAR +G+ 
Sbjct: 172 EVWELARHLGIP 183


>gi|167462072|ref|ZP_02327161.1| argininosuccinate synthase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383016|ref|ZP_08056846.1| argininosuccinate synthase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153039|gb|EFX45499.1| argininosuccinate synthase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 408

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++++A SGG+D+SV    L+ + GYDV+ V                   G+D+   +   
Sbjct: 5   KIILAYSGGLDTSVAIKWLQDNYGYDVVAV-------------AIDVGEGKDLDFVKAKA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  V  YV D +ERF +  ++P   + A  E   P V   +R +    L+ +  + GA
Sbjct: 52  LQVGAVESYVVDAKERFADEFVLPVIKANAMYENKYPLVSALSRPLISRVLVEMAEKTGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAIAHG 117


>gi|93004847|ref|YP_579284.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychrobacter cryohalolentis K5]
 gi|92392525|gb|ABE73800.1| GMP synthase (glutamine-hydrolyzing) [Psychrobacter cryohalolentis
           K5]
          Length = 531

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNS 57
                +    L K   D +V++ +SGGVDSSVVAALL +  G  +  V      L+L+  
Sbjct: 211 DNIIDMRIEQLKKQIGDKQVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDTGLLRLHEG 270

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETP 114
            +                 +   + + V     D EE F  A+             G+T 
Sbjct: 271 DQVM---------------QIFAENMGVKVIRVDAEELFLTALAGESDPEAKRKIIGKTF 315

Query: 115 LPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
              V  N      ++   +     + LA G      +      + +  + +         
Sbjct: 316 -IDVFANSA---REVSEQSDGKVIEFLAQGTIYPDVIESAKSHQGKAHVIKSHHN----- 366

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +         +L  PL D+ K+ VR L   +GL 
Sbjct: 367 --VGGLPDDLAFELVEPLRDLFKDEVRKLGITLGLP 400


>gi|118580426|ref|YP_901676.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pelobacter propionicus DSM 2379]
 gi|226739654|sp|A1AQJ8|GUAA_PELPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118503136|gb|ABK99618.1| GMP synthase (glutamine-hydrolyzing) [Pelobacter propionicus DSM
           2379]
          Length = 520

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSV AAL+ R  G  +  V     ++      +G           R   
Sbjct: 224 RVILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDNGLLRLEEGDQVM-------RTFA 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL---- 136
           + + V     + EERF +A          AGE+     +  R +  S  + +  +     
Sbjct: 274 ENLGVKVIRVNAEERFLSA---------LAGES---DPEKKRKIIGSLFVEIFDEESNRI 321

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +    +           +    +     L  PL ++
Sbjct: 322 EDARWLAQGTIYPDVIESAGAKTGKAHNIKSHHN-------VGGLPEYMKLKLLEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 375 FKDEVRAIGEELGLP 389


>gi|304311842|ref|YP_003811440.1| GMP synthase [gamma proteobacterium HdN1]
 gi|301797575|emb|CBL45795.1| GMP synthase [gamma proteobacterium HdN1]
          Length = 521

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL R  G  +  V     +     K +G+               
Sbjct: 226 VLLGLSGGVDSSVVAALLNRAIGDKLTCVF---VDHGLLRKNEGNQVMATF-------AQ 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + +     D E+ F   +             G T +   D              R    
Sbjct: 276 HMGIRVIRVDAEDVFLGKLKGESDPERKRKIIGNTFIEVFDQ----------ESARLNNI 325

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +        +  + +           +    +     L  PL ++ K+
Sbjct: 326 KWLAQGTIYPDVIESAGTKNGKAHLIKSHHN-------VGGLPEDMKMKLVEPLRELFKD 378

Query: 199 SVRDLAREMGLD 210
            VR +  E+GL 
Sbjct: 379 EVRRIGVELGLP 390


>gi|331005662|ref|ZP_08329029.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC1989]
 gi|330420520|gb|EGG94819.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC1989]
          Length = 524

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 31/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++    K +G               +
Sbjct: 229 VLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRKNEGDQVMSMF-------AE 278

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + V     D EE F +    V  P     A G T +          F +    ++  G 
Sbjct: 279 NMGVKVIRVDAEELFLSKLAGVSDPELKRKAIGNTFIE--------IFDE--ESSKLNGV 328

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LA G      +        +  + +           +         +L  PL ++ K+
Sbjct: 329 NWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMELVEPLRELFKD 381

Query: 199 SVRDLAREMGLD 210
            VR +  E+GL 
Sbjct: 382 EVRKIGLELGLP 393


>gi|327182788|gb|AEA31235.1| GMP synthase [Lactobacillus amylovorus GRL 1118]
          Length = 516

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 203 TMDDFIDMKIGEIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGNQLTAIF---VDHGML 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + ++RF +            G T     + 
Sbjct: 260 RKDEGDQVMKALNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEK 300

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++   D LA G        V + G       +          
Sbjct: 301 KRKIIGKEFIEVFNEEAKKIKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 351

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 352 -VGGLPKDMHFKLIEPLRKLFKDEVRELGEKLGIP 385


>gi|268679235|ref|YP_003303666.1| GMP synthase, large subunit [Sulfurospirillum deleyianum DSM 6946]
 gi|268617266|gb|ACZ11631.1| GMP synthase, large subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 511

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+  +SGGVDSSVVA LL       IG      +   +           +      +
Sbjct: 215 DKKVLCGVSGGVDSSVVATLLAEA----IG------DKLVSVFVDNGLLRANERAQVEAM 264

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +  V     D  E+F +    V  P       GET +                  ++ 
Sbjct: 265 FKSRGVPLITVDASEKFLSRLAGVSDPEKKRKIIGETFIEV-----------FDEEAKKH 313

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G   LA G  + + +      K      +           +         +L  PL ++
Sbjct: 314 NGIQFLAQG-TLYTDVIESVSVKGPSKTIKSHHN-------VGGLPDWMSFELIEPLREI 365

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 366 FKDEVRTLGAELGLP 380


>gi|315037493|ref|YP_004031061.1| GMP synthase [Lactobacillus amylovorus GRL 1112]
 gi|312275626|gb|ADQ58266.1| GMP synthase [Lactobacillus amylovorus GRL 1112]
          Length = 516

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 203 TMDDFIDMKIGEIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGNQLTAIF---VDHGML 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + ++RF +            G T     + 
Sbjct: 260 RKDEGDQVMKALNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEK 300

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++   D LA G        V + G       +          
Sbjct: 301 KRKIIGKEFIEVFNEEAKKIKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 351

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 352 -VGGLPKDMHFKLIEPLRKLFKDEVRELGEKLGIP 385


>gi|39997292|ref|NP_953243.1| GMP synthase [Geobacter sulfurreducens PCA]
 gi|44887925|sp|P60500|GUAA_GEOSL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|39984182|gb|AAR35570.1| GMP synthase [Geobacter sulfurreducens PCA]
          Length = 520

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 65/191 (34%), Gaps = 27/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSV AAL+ R  G  +  V                  A  D   A    
Sbjct: 224 RVILGLSGGVDSSVAAALIHRAIGDQLTCVF---------VDNGLLRLAEGDQVMATF-A 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGAD 139
           + + V     D E+RF  A+                 +  N  V  F +    +R  GA 
Sbjct: 274 ENLGVKVIRVDAEQRFLTALADEADPEKKRK------IIGNLFVEIFEE--ESSRIEGAT 325

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +        +    +           +    +     L  PL ++ K+ 
Sbjct: 326 WLAQGTIYPDVIESAGAKTGKAHNIKSHHN-------VGGLPEYMKLKLLEPLRELFKDE 378

Query: 200 VRDLAREMGLD 210
           VR +  E+GL 
Sbjct: 379 VRAIGEELGLP 389


>gi|58336584|ref|YP_193169.1| GMP synthase [Lactobacillus acidophilus NCFM]
 gi|227903135|ref|ZP_04020940.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus acidophilus ATCC 4796]
 gi|75358092|sp|Q5FMD6|GUAA_LACAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58253901|gb|AAV42138.1| GMP synthase [Lactobacillus acidophilus NCFM]
 gi|227869121|gb|EEJ76542.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus acidophilus ATCC 4796]
          Length = 516

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G      
Sbjct: 214 EIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGDQVMKA 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + +ERF N            G T     +  R +   + + 
Sbjct: 271 LNKD-------LGVNIIRVNAQERFLNK---------LKGVT---DPEQKRKIIGKEFIE 311

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   D LA G        V + G       +           +    +    
Sbjct: 312 VFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPEDMNF 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L  ++G+ 
Sbjct: 362 KLIEPLRKLFKDEVRELGEKLGIP 385


>gi|212638331|ref|YP_002314851.1| argininosuccinate synthase [Anoxybacillus flavithermus WK1]
 gi|226729219|sp|B7GGR4|ASSY_ANOFW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|212559811|gb|ACJ32866.1| Argininosuccinate synthase [Anoxybacillus flavithermus WK1]
          Length = 402

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV+A SGG+D+SV    L+  GYDV+   L                 G+D+   +  
Sbjct: 3   NPKVVLAYSGGLDTSVAIKWLQEQGYDVVACCL-------------DVGEGKDLEFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  Y+ D +E F N   +    ++A  E   P +   +R +    L+ +    G
Sbjct: 50  ALKVGAVKSYMIDAKEEFANEYALIALQAHALYEGKYPLISALSRPLISKKLVEIAELEG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 AVAVAHG 116


>gi|146279089|ref|YP_001169248.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557330|gb|ABP71943.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 514

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ MSGGVDS++ AAL K  G+ V+G+TL +  + + ++R                C+ +
Sbjct: 76  VLGMSGGVDSALTAALFKAAGWRVVGLTLPIDQNPEETERGIE------------ACEAL 123

Query: 84  NVSHYVFDYEERFRNAV 100
            + H   D  + +R AV
Sbjct: 124 RIEHLHLDLSQAYRAAV 140


>gi|88706901|ref|ZP_01104600.1| GMP synthase [Congregibacter litoralis KT71]
 gi|88698823|gb|EAQ95943.1| GMP synthase [Congregibacter litoralis KT71]
          Length = 524

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
            V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +  +             
Sbjct: 228 HVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMEMF----------- 276

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSV 132
                  + V     D E  F + +             G T +          F +    
Sbjct: 277 ----ARNMGVKVIRSDSEALFLDRLAGVSDPEEKRKIIGNTFIEV--------FDE--EA 322

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +  G   LA G      +        +  + +           +    +    +L  PL
Sbjct: 323 AKIEGVRWLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMALELVEPL 375

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 376 RELFKDEVRKIGLELGLP 393


>gi|226952213|ref|ZP_03822677.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acinetobacter sp. ATCC 27244]
 gi|294648847|ref|ZP_06726303.1| GMP synthase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837051|gb|EEH69434.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acinetobacter sp. ATCC 27244]
 gi|292825238|gb|EFF83985.1| GMP synthase [Acinetobacter haemolyticus ATCC 19194]
          Length = 522

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   D + +     D EERF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFADNMGIRVIRADAEERFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +    +
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPE 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               DL  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFDLVEPLRDLFKDEVRKLGTTLGLP 391


>gi|242013853|ref|XP_002427615.1| GMP synthase, putative [Pediculus humanus corporis]
 gi|212512030|gb|EEB14877.1| GMP synthase, putative [Pediculus humanus corporis]
          Length = 685

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 36/211 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +      VI V +         ++  S    + +    
Sbjct: 229 NNKVLLLVSGGVDSTVCAALLHKALRPDQVIAVHI----DNGFMRKNESALVEESL---- 280

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASS----YAAGETPLPCVDCN----RTVKFSDL 129
                + +   V +  ++F               +  G+T + C   N    R +     
Sbjct: 281 ---QRLGLKLKVVNAAQQFFEG-TTKMPGERKPDWKIGQTKMLCQTVNPEEKRKIIGDIF 336

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ------Q 183
           ++V  +     + +   +R        G  R  +     +       +  T        +
Sbjct: 337 VNVANE-----VISELNLRPDEVFLGQGTLRPDLIESASVLASDKAVVIKTHHNDTELVR 391

Query: 184 QLC---DLRFPLGDMKKESVRDLAREMGLDI 211
           QL     +  PL D  K+ VR L R++GL  
Sbjct: 392 QLREAGRVVEPLKDFHKDEVRALGRDLGLPT 422


>gi|14590117|ref|NP_142181.1| NAD synthetase [Pyrococcus horikoshii OT3]
 gi|6093470|sp|O57921|NADE_PYRHO RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|146386765|pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
           Horikoshii Ot3
 gi|146386766|pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
           Horikoshii Ot3
 gi|3256568|dbj|BAA29251.1| 257aa long hypothetical NH(3)-dependent NAD(+) synthetase
           [Pyrococcus horikoshii OT3]
          Length = 257

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 45/201 (22%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCA 69
           L+  +   +  VV+ +SGGVDS+ VA L  K  G + V+G+ +  + +            
Sbjct: 14  LEFIREKGNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN------------ 61

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +DV DA+ V + + + + V + +      ++  F  +           +     +   L
Sbjct: 62  -KDVEDAKLVAEKLGIGYKVINIKP-----IVDSFVENLELNLDRKGLGNIMSRTRMIML 115

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            +    LG   +  G   RS    G             D   D +               
Sbjct: 116 YAHANSLG--RIVLGTSNRSEFLTG------YFTKWG-DGASDYA--------------- 151

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            P+ ++ K  V ++A+ +G+ 
Sbjct: 152 -PIINLYKTEVWEIAKRIGVP 171


>gi|331090911|ref|ZP_08339754.1| hypothetical protein HMPREF9477_00397 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405465|gb|EGG84998.1| hypothetical protein HMPREF9477_00397 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 275

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 91/288 (31%), Gaps = 85/288 (29%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG----------QD 72
           +V+A SGGVDSS    LLK      I           +SK  G+              +D
Sbjct: 23  IVLAFSGGVDSS---LLLK------ICC--------DSSKNYGTTVYAITVHTELHPMKD 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDL 129
           V  A +V       H V  Y +  ++A I              P   C  C   + F  L
Sbjct: 66  VEIATKVAKEAGAKHLVV-YIDELQDAGIEY-----------NPIDRCYRCKSLL-FGKL 112

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++LG   +  G          DD    R   R +                    + 
Sbjct: 113 KEKAKELGVKNVVEG-------TNEDDLHVYRPGIRALRELN----------------II 149

Query: 190 FPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            PL +    K  VR LA E G+ +A++  +   C   +  Y   +         EG+   
Sbjct: 150 SPLAESGFTKAEVRKLAAEYGISVANRPSTP--CMATRFPYGAKLDYERMHQVEEGE--- 204

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN---SSRVIV 292
              + L     +  Y +  R    +A  E   V   D     ++RV V
Sbjct: 205 ---EWL---KTLGFYNVRIRVHGEIARIE---VDEKDMPLLLNNRVKV 243


>gi|325955953|ref|YP_004286563.1| GMP synthase [Lactobacillus acidophilus 30SC]
 gi|325332518|gb|ADZ06426.1| GMP synthase [Lactobacillus acidophilus 30SC]
          Length = 511

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 203 TMDDFIDMKIGEIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGNQLTAIF---VDHGML 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + ++RF +            G T     + 
Sbjct: 260 RKDEGDQVMKALNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEK 300

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++   D LA G        V + G       +          
Sbjct: 301 KRKIIGKEFIEVFNEEAKKIKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 351

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 352 -VGGLPKDMHFKLIEPLRKLFKDEVRELGEKLGIP 385


>gi|302392982|ref|YP_003828802.1| NH(3)-dependent NAD(+) synthetase [Acetohalobium arabaticum DSM
           5501]
 gi|302205059|gb|ADL13737.1| NH(3)-dependent NAD(+) synthetase [Acetohalobium arabaticum DSM
           5501]
          Length = 241

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 60/187 (32%), Gaps = 38/187 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+V A L K+            +             + +D  DA  V D  
Sbjct: 28  VVGLSGGIDSAVTAVLCKQA-----------FPDSTLGLIMPCYSSPEDSEDAELVADKF 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +     D  + F               E  +   +    ++ + L      L   V+ T
Sbjct: 77  GIEVETVDLNQTFDILYAE--LEDDDRAEDNMAVANIKPRLRMTVLYYYAANLNRLVVGT 134

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
            +  RS L VG   K         D   D                  PLG++ K  VR L
Sbjct: 135 DN--RSELEVGYFTKH-------GDGGVD----------------IAPLGNLVKTEVRQL 169

Query: 204 AREMGLD 210
           A+ + + 
Sbjct: 170 AKYLEIP 176


>gi|242242251|ref|ZP_04796696.1| argininosuccinate synthase [Staphylococcus epidermidis W23144]
 gi|242234310|gb|EES36622.1| argininosuccinate synthase [Staphylococcus epidermidis W23144]
          Length = 401

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    + 
Sbjct: 2   KDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  
Sbjct: 49  ALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTN 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|293368339|ref|ZP_06614967.1| argininosuccinate synthase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291317586|gb|EFE58004.1| argininosuccinate synthase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329734894|gb|EGG71194.1| argininosuccinate synthase [Staphylococcus epidermidis VCU045]
          Length = 401

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    + 
Sbjct: 2   KDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  
Sbjct: 49  ALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTN 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|253582748|ref|ZP_04859968.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835324|gb|EES63865.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 302

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 74/231 (32%), Gaps = 58/231 (25%)

Query: 23  VVVAMSGGVDSSV---VAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V VA SGGVDSS+    A L   ++G  V  VT+                    +  +++
Sbjct: 48  VAVAFSGGVDSSLLLKAACLSAVKNGKKVYAVTMHTTLHPMNE-----------IESSKK 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQ 135
             + I   H +    +  R A I              P   C  C + + F  +L     
Sbjct: 97  TAEEIGAEHLIIK-VDELREAGIEN-----------NPVERCYLCKKYL-FQKILDKAES 143

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194
           LG   +  G          DD      + RP                 +   ++ PL + 
Sbjct: 144 LGIKTVLDG-------TNEDD----LHLFRP------------GLKALRELGIKSPLAES 180

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
              K  VR LA E GL ++ K  +   C   +  Y   +         +G+
Sbjct: 181 GFTKSDVRKLAEEYGLSVSKKPSTP--CLATRFPYGSRLTYEEMQKVEKGE 229


>gi|27467575|ref|NP_764212.1| argininosuccinate synthase [Staphylococcus epidermidis ATCC 12228]
 gi|57866474|ref|YP_188140.1| argininosuccinate synthase [Staphylococcus epidermidis RP62A]
 gi|251810334|ref|ZP_04824807.1| argininosuccinate synthase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875540|ref|ZP_06284411.1| argininosuccinate synthase [Staphylococcus epidermidis SK135]
 gi|30172810|sp|Q8CPU3|ASSY_STAES RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|61211372|sp|Q5HQK0|ASSY_STAEQ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|27315119|gb|AAO04254.1|AE016746_44 argininosuccinate synthase [Staphylococcus epidermidis ATCC 12228]
 gi|57637132|gb|AAW53920.1| argininosuccinate synthase [Staphylococcus epidermidis RP62A]
 gi|251806142|gb|EES58799.1| argininosuccinate synthase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295567|gb|EFA88090.1| argininosuccinate synthase [Staphylococcus epidermidis SK135]
 gi|329730535|gb|EGG66923.1| argininosuccinate synthase [Staphylococcus epidermidis VCU144]
 gi|329737716|gb|EGG73959.1| argininosuccinate synthase [Staphylococcus epidermidis VCU028]
          Length = 401

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    + 
Sbjct: 2   KDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  
Sbjct: 49  ALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTN 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|326392916|ref|ZP_08214121.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325991043|gb|EGD49830.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 42

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
            +D V V F K +  +  GQ+ VFY  D     V+GGGII  
Sbjct: 4   EEDKVLVKFLKPQRAITPGQSVVFYDKDV----VVGGGIIEK 41


>gi|319401761|gb|EFV89969.1| argininosuccinate synthase [Staphylococcus epidermidis FRI909]
          Length = 401

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDV+   L                 G+D+    + 
Sbjct: 2   KDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCL-------------DVGEGKDLDVVYQK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V  ++ D  + F +  +          E   P V   +R +    L+ +  +  
Sbjct: 49  ALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTN 108

Query: 138 ADVLATG 144
           +  +A G
Sbjct: 109 SIGIAHG 115


>gi|224418410|ref|ZP_03656416.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253827728|ref|ZP_04870613.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313141940|ref|ZP_07804133.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253511134|gb|EES89793.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313130971|gb|EFR48588.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 325

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++K  G +V+ +   +    K  K +            + + 
Sbjct: 1   MKALALFSGGLDSLLAIKIIKDMGIEVLALHFDIGFIGKNDKSEAL----------KAIL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I+V   V D + +F N V+  F   Y  G+   PC+DC+  + FS   S+    GA  
Sbjct: 51  SQIDVPLKVVDIKRQFFNEVL--FEPKYGYGKYFNPCIDCHGNM-FSHAFSMLESEGASF 107

Query: 141 LATGHYIRSRLYVG 154
           + +G  +  R    
Sbjct: 108 VISGEVLGQRPKSQ 121


>gi|138896163|ref|YP_001126616.1| NH(3)-dependent NAD(+) synthetase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250117|ref|ZP_03148811.1| NAD+ synthetase [Geobacillus sp. G11MC16]
 gi|134267676|gb|ABO67871.1| NH(3)-dependent NAD(+) synthetase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210301|gb|EDY05066.1| NAD+ synthetase [Geobacillus sp. G11MC16]
          Length = 246

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 50/232 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+KR            +               +D+ DA +V ++ 
Sbjct: 25  VVGISGGIDSAVVAHLIKRA-----------FPDNSLGLIMPCKSHAKDMEDALKVVESC 73

Query: 84  NVSHYVFDYEERFRNAV--IV---PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + H V D  E  ++    +         +   +  L   +    ++ + L +V    G 
Sbjct: 74  GIQHLVIDLTEVHKSLFGAVEAELKAIGEWNEEKARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 LVVGTDNAAEWHTGYFTKYGDGGVDLV--------------------------PLIHFTK 167

Query: 198 ESVRDLAREMGLD--IADKSDSQDICFV-----QQGKYFDVVKRINAGIALE 242
             VR++AR +G+   I  K+ S  +        + G  +D++ +   G  + 
Sbjct: 168 GEVREMARLLGVPEEIITKAPSAGLWEGQTDESEMGTTYDMIDKYLKGEDIP 219


>gi|254428365|ref|ZP_05042072.1| ExsB family [Alcanivorax sp. DG881]
 gi|196194534|gb|EDX89493.1| ExsB family [Alcanivorax sp. DG881]
          Length = 523

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 27/190 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++     ++G               D
Sbjct: 228 VILGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRHQEGDQVMEMF-------AD 277

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140
            + V     D E+ F   +                 +  N  +          +L  A+ 
Sbjct: 278 NMGVKVIRVDAEDNFLGKLAGEADPELKRK------IIGNTFI--DIFDEEAGKLENANW 329

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +     L  PL ++ K+ V
Sbjct: 330 LAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEDMKLKLVEPLRELFKDEV 382

Query: 201 RDLAREMGLD 210
           R +  E+GL 
Sbjct: 383 RKIGLELGLP 392


>gi|108760981|ref|YP_631957.1| GMP synthase [Myxococcus xanthus DK 1622]
 gi|108464861|gb|ABF90046.1| GMP synthase [Myxococcus xanthus DK 1622]
          Length = 517

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 72/197 (36%), Gaps = 34/197 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV+ A+SGGVDSSV A LL R     IG  LQ         R+      +   +A  
Sbjct: 219 EHGRVICALSGGVDSSVAALLLHRA----IGPRLQCIFVDNGVLRQ----NERAQVEALF 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V D  +V     D  +RF +           AG T     +  R +      +      R
Sbjct: 271 V-DRFHVPLKTVDARQRFLDK---------LAGVT---DPEKKRKIIGREFIAVFEEAAR 317

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +  A+ LA G  +   +      K   +  +           +    +     L  PL 
Sbjct: 318 DVQDAEFLAQG-TLYPDVIESVSYKGPSVTIKSHHN-------VGGLPETMKLKLVEPLR 369

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L RE+GL 
Sbjct: 370 ELFKDEVRALGRELGLP 386


>gi|317121131|ref|YP_004101134.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter marianensis
           DSM 12885]
 gi|315591111|gb|ADU50407.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter marianensis
           DSM 12885]
          Length = 526

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 35/197 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R + A+SGGVDS+V AAL+ R  G  +I V                     +V + R + 
Sbjct: 230 RALCALSGGVDSAVAAALVHRAIGPRLICVF-----------VDTGLLREGEVEEVRSIF 278

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + +   V D  +RF    + +  P A   A GET                    R+L 
Sbjct: 279 TGLGMDLRVVDARDRFLAALDGLADPEAKRKAVGETF-----------IRVFEEEARRLE 327

Query: 138 ADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A V A    ++   Y    + G       +           +          L  PL D+
Sbjct: 328 AQVGAIPFLVQGTTYPDVIESGGGAAATIKSHHN-------VGGLPADLEFQLVEPLRDL 380

Query: 196 KKESVRDLAREMGLDIA 212
            K+ VR++ R +GL  A
Sbjct: 381 FKDEVREVGRRLGLPPA 397


>gi|225619893|ref|YP_002721150.1| thiamine biosynthesis protein [Brachyspira hyodysenteriae WA1]
 gi|225214712|gb|ACN83446.1| thiamine biosynthesis protein [Brachyspira hyodysenteriae WA1]
          Length = 356

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 54/266 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + ++ +SGG+DS +V A+LKR+  DV+   L+     + +  K           A++
Sbjct: 4   KKAKAILLLSGGLDSMLVGAILKRENIDVLA--LRFVTGLEYAVIKEELLEIYSEDPAKK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D +N+       ++ + +  + P    Y  G    PC+DC+       +L   +++  
Sbjct: 62  AADFLNIPIRFVSLKDVYLDMFLNP---KYGYGSAINPCLDCHI-----LMLKTAKKIME 113

Query: 137 --GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G D +ATG     R        + + +   +     +S       +  L     P   
Sbjct: 114 EEGFDFIATGEVKGQRPMSQ----KSQDLLNAIK----ESGLEGRLLRP-LSAKLLP--- 161

Query: 195 MKKES-----VRD---------------LAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           + K        R+               LA E G+           C +    Y    +R
Sbjct: 162 ITKAEEEGLINRENLYDIYGRSRNVQMKLAEEFGITDYPIPAGAG-CAIVDKGYA---RR 217

Query: 235 INAGIALEG----DIVHLNGQILGRH 256
            N  IA  G    +I  +    +GRH
Sbjct: 218 YNDLIANNGKDILNIELMQYLAIGRH 243


>gi|294101865|ref|YP_003553723.1| NAD+ synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616845|gb|ADE56999.1| NAD+ synthetase [Aminobacterium colombiense DSM 12261]
          Length = 248

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DS++VA LL+R  G +++GV +                  +D  DA ++ + 
Sbjct: 32  VVGLSGGIDSALVAVLLRRAFGTNMLGVIM------------PCHSLSEDQQDAEKLIEL 79

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            ++   V D    +   V             PL   +    ++ + L ++ + +G   L 
Sbjct: 80  FSIPSTVVDITATYDTLVQR--LKETNVYINPLALANIKPRLRMTTLYALAQSMG--YLV 135

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G   ++ +  G   K         D   D                 +PLGD+ KE VR+
Sbjct: 136 CGTSNKAEIVAGYFTKH-------GDSGAD----------------IWPLGDLLKEEVRE 172

Query: 203 LAREMGLD 210
            +  +G+ 
Sbjct: 173 TSTFLGIP 180


>gi|329666624|gb|AEB92572.1| GMP synthase [Lactobacillus johnsonii DPC 6026]
          Length = 517

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ +   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 204 TMDDFIEMQVEEIREKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + +ERF N            G T     + 
Sbjct: 261 RKDEGDQVMQALNKD-------LGVNIIRVNAQERFLNK---------LKGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 386


>gi|148985461|ref|ZP_01818666.1| argininosuccinate synthase [Streptococcus pneumoniae SP3-BS71]
 gi|147922419|gb|EDK73539.1| argininosuccinate synthase [Streptococcus pneumoniae SP3-BS71]
          Length = 154

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
            L +   +KN    +V++A SGG+D+SV    LK+D YDV+ V + +          G  
Sbjct: 6   PLKNRKKEKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV----------GEG 54

Query: 68  CAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVK 125
                ++D A +V     V  YV D ++ F    ++    S+A  E   P V   +R + 
Sbjct: 55  KDLDFIHDKALKVGA---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLI 111

Query: 126 FSDLLSVTRQLGADVLATG 144
              L+ +  Q GA  +A G
Sbjct: 112 SKKLVEIAHQTGATTIAHG 130


>gi|303244613|ref|ZP_07330946.1| NAD+ synthetase [Methanothermococcus okinawensis IH1]
 gi|302485039|gb|EFL47970.1| NAD+ synthetase [Methanothermococcus okinawensis IH1]
          Length = 254

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 58/211 (27%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCC 68
           ++ KN     VVV +SGG+DSS+VA L  +  G D V+G+ +  +  N            
Sbjct: 16  NMVKNANANGVVVGLSGGIDSSLVATLCVKALGKDKVLGIIMPEKNSNPMDKEH------ 69

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG-----ETPLPCVDCN-- 121
                  A  +   + + + + D         I     ++ AG            D N  
Sbjct: 70  -------AELIAKKLGIKYIISD---------ITDILKAFGAGGYVPTREFNKLADGNLK 113

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             ++   L                              +  +       + + Y  + T 
Sbjct: 114 PRIRMCILYYFA-------------------------NKNNLLVAGTSNKSEIYMGYGTK 148

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
              L      +G++ K  VR+LA+ +G+   
Sbjct: 149 YGDLGSDFLLIGNLFKTEVRELAKYLGIPNE 179


>gi|295676799|ref|YP_003605323.1| GMP synthase, large subunit [Burkholderia sp. CCGE1002]
 gi|295436642|gb|ADG15812.1| GMP synthase, large subunit [Burkholderia sp. CCGE1002]
          Length = 527

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AALL R  G  +  V                      + +A +
Sbjct: 222 NEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V     D + V     D  E F             AG T     +  R +  ++ + V  
Sbjct: 268 VMALFADHLGVKVIHVDASEAFLGK---------LAGVT---DPEAKRKIIGAEFVEVFQ 315

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +     GK+     +           +    +     L 
Sbjct: 316 AEAGKLTDAKWLAQGTIYPDVIESAGKGKKAAQTIKSHHN-------VGGLPETLNLKLL 368

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR+L  ++GL 
Sbjct: 369 EPLRELFKDEVRELGVKLGLP 389


>gi|42518314|ref|NP_964244.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus johnsonii NCC 533]
 gi|50400372|sp|Q74LF7|GUAA_LACJO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41582598|gb|AAS08210.1| GMP synthase [Lactobacillus johnsonii NCC 533]
          Length = 517

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 204 TMDDFIEMQVDEIRKKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + +ERF N            G T     + 
Sbjct: 261 RKDEGDQVMQALNKD-------LGVNIIRVNAQERFLNK---------LKGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 386


>gi|147920648|ref|YP_685553.1| hypothetical protein RCIX867 [uncultured methanogenic archaeon
           RC-I]
 gi|110620949|emb|CAJ36227.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 276

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 77/214 (35%), Gaps = 46/214 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LL +   D +G      +   A+         +DV DA  +   
Sbjct: 27  VLVAFSGGVDST----LLLKCAVDTLGA-----DKVAAATAISEITHREDVDDAAMIAKD 77

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V H +   +E      +           TP  C  C R  +F+ L+ +  +LG D + 
Sbjct: 78  LGVRHIIIRSDEVENADFV---------ANTPERCYICKRG-RFARLVHLKDELGLDYIV 127

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          DD    R   + M                    +R PL    + K  +
Sbjct: 128 DG-------SNKDDEADYRPGEKAMKEF----------------GIRSPLREAGLYKSEI 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           R+L+R MGL   D+      C   +  Y   + R
Sbjct: 165 RELSRLMGLPTWDRPSR--ACLASRIPYGAQITR 196


>gi|209518734|ref|ZP_03267550.1| GMP synthase, large subunit [Burkholderia sp. H160]
 gi|209500848|gb|EEA00888.1| GMP synthase, large subunit [Burkholderia sp. H160]
          Length = 527

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AALL R  G  +  V                      + +A +
Sbjct: 222 NEHVILGLSGGVDSSVAAALLHRAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V     D + V     D  E F             AG T     +  R +  ++ + V  
Sbjct: 268 VMALFADHLGVKVIHVDASEAFLGK---------LAGVT---DPEAKRKIIGAEFVEVFQ 315

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +     GK+     +           +    +     L 
Sbjct: 316 AEAGKLTDAKWLAQGTIYPDVIESAGKGKKAAQTIKSHHN-------VGGLPETLNLKLL 368

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR+L  ++GL 
Sbjct: 369 EPLRELFKDEVRELGVKLGLP 389


>gi|167043534|gb|ABZ08230.1| putative GMP synthase C terminal domain protein [uncultured marine
           microorganism HF4000_APKG2J17]
          Length = 537

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGGVDSSV AALL    G  +  V     ++    + +G               D
Sbjct: 242 VVLGLSGGVDSSVTAALLHEAIGEQLTCVF---VDTGLMREGEGDQVVELFR-------D 291

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             N+     D  + F +    V  P       G T                     ++G 
Sbjct: 292 HYNIPLIHRDAGDLFLDKLDGVTDPEEKRKIIGSTF-----------IDVFEEEAAKVGD 340

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 341 AEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKLKLVEPLRELFK 393

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 394 DEVRALGRELGLP 406


>gi|138896319|ref|YP_001126772.1| argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196249942|ref|ZP_03148637.1| Argininosuccinate synthase [Geobacillus sp. G11MC16]
 gi|166219967|sp|A4IRS3|ASSY_GEOTN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|134267832|gb|ABO68027.1| Argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196210456|gb|EDY05220.1| Argininosuccinate synthase [Geobacillus sp. G11MC16]
          Length = 406

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKLVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D ++ F N   +    + A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G         G+D  R  +  + ++ + D    +    +               
Sbjct: 110 AVAVAHG-----CTGKGNDQVRFEVSIKALNPDLD---VIAPVREWSWSR---------- 151

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E   + A++ G+ I    DS
Sbjct: 152 EEEIEYAKKHGIPIPVDLDS 171


>gi|110834711|ref|YP_693570.1| GMP synthase [Alcanivorax borkumensis SK2]
 gi|123050395|sp|Q0VNF0|GUAA_ALCBS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|110647822|emb|CAL17298.1| GMP synthase (glutamine-hydrolysing) [Alcanivorax borkumensis SK2]
          Length = 523

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 31/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++     ++G               D
Sbjct: 228 VILGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRHQEGDQVMEMF-------AD 277

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL-GA 138
            + V     D E          F    A    P     +  N  +          +L  A
Sbjct: 278 NMGVKVIRVDAE--------DNFLGKLAGEADPEKKRKIIGNTFI--DIFDDEASKLQNA 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LA G      +        +  + +           +    +     L  PL ++ K+
Sbjct: 328 NWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEDMKLKLVEPLRELFKD 380

Query: 199 SVRDLAREMGLD 210
            VR +  E+GL 
Sbjct: 381 EVRKIGLELGLP 392


>gi|229087189|ref|ZP_04219338.1| Argininosuccinate synthase [Bacillus cereus Rock3-44]
 gi|228696161|gb|EEL48997.1| Argininosuccinate synthase [Bacillus cereus Rock3-44]
          Length = 401

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  V  Y+ D +E F N   +     +   E   P V   +R +    L+ V  Q 
Sbjct: 49  KAISVGAVKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEVAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|57641491|ref|YP_183969.1| PP family ATPase [Thermococcus kodakarensis KOD1]
 gi|57159815|dbj|BAD85745.1| ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1]
          Length = 304

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 33/197 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+V +SGG DS+V A +LK+ GY++  + + L     + K +           AR  
Sbjct: 47  DEKVLVVVSGGKDSAVTAHVLKKLGYNIECLHINLGIGEYSEKGE---------RYAREQ 97

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAG--ETPLPCVDCNRTVKFSDLLSVTRQLG 137
           C+ I    ++   +E             Y  G   T  P        K           G
Sbjct: 98  CEKIGAPLHIVRLKE----------LLGYGIGEVRTRRPTCSYCGLTKRYIFNKFAYDNG 147

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ----LCDLRFPLG 193
            D +ATGH +        D +   I    M+            T  Q    L     PL 
Sbjct: 148 FDAVATGHNL--------DDEASFIFNNIMNWNTQYLAKQGPVTPSQFNGKLVKKVKPLY 199

Query: 194 DMKKESVRDLAREMGLD 210
           ++ +  V   A   G++
Sbjct: 200 EVTEREVVAYALANGIE 216


>gi|260174366|ref|ZP_05760778.1| putative GMP synthase (glutamine-hydrolyzing) [Bacteroides sp. D2]
 gi|315922634|ref|ZP_07918874.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696509|gb|EFS33344.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 434

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 35/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH-----------VNHGLMRKGESEDVVE 188

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
           V + +  +    D        V   F +  A  E P     +     ++        R+L
Sbjct: 189 VFNQLKANLVYVD--------VTDRFLNKLAGVEDPEQKRKIIGGEFIRV--FEEEARKL 238

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G D L  G        + + G +   M +           +    +     L  PL  +
Sbjct: 239 NGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFQLVEPLRQL 288

Query: 196 KKESVRDLAREMGLD 210
            K+ VR    E+GL 
Sbjct: 289 FKDEVRACGLELGLP 303


>gi|315638034|ref|ZP_07893219.1| ThiI family protein [Campylobacter upsaliensis JV21]
 gi|315481882|gb|EFU72501.1| ThiI family protein [Campylobacter upsaliensis JV21]
          Length = 327

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+ + G  V  + + +          G         + RR  
Sbjct: 1   MKALALFSGGLDSLLAMKLITQQGIAVKALNINI----------GFGSRSDKSEEMRRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ +  GA  
Sbjct: 51  ALVGAEFEMIDVRNSYLKEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKDEGASF 107

Query: 141 LATGHYIRSRLYVGDD 156
           + TG  +  R     +
Sbjct: 108 IITGEVLGQRPMSQRN 123


>gi|163782463|ref|ZP_02177461.1| DNA mismatch repair protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882496|gb|EDP76002.1| DNA mismatch repair protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 398

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 42/203 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVV+A SGG+D+SV+   L   GY+VI            +   G      ++ D  R  
Sbjct: 3   KRVVLAYSGGLDTSVIVRWLTDKGYEVI----------TYTADVGQGEELAEIPDKARAA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V   V D +E F     +P   + A  E   P     +R +    L+    +  AD
Sbjct: 53  GA--VEAIVEDIKEEFARDFCLPTLRALALYEGKYPLTASLSRPLISKKLVHYADKFRAD 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGDMK 196
            +A G                           DQ  F   ++A        +  P+ + +
Sbjct: 111 YVAHG---------------------STGKGNDQVRFELSVWALNPDIE--VLAPVREWE 147

Query: 197 ---KESVRDLAREMGLDIADKSD 216
              +E   + A++ G+ +    +
Sbjct: 148 FKAREEQVEYAKKHGIPVKATKE 170


>gi|126466200|ref|YP_001041309.1| NH(3)-dependent NAD(+) synthetase [Staphylothermus marinus F1]
 gi|189030730|sp|A3DP41|NADE_STAMF RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|126015023|gb|ABN70401.1| NH(3)-dependent NAD(+) synthetase [Staphylothermus marinus F1]
          Length = 275

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 41/189 (21%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDSSV   L +K  G + V  + +                  +D+ DA  +  
Sbjct: 37  VIGLSGGVDSSVTLLLTMKAIGIERVTALIM----------PDTRVTPKRDIEDALWLVK 86

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              + +YV           I     SY+A    +P  + N  +   +L +  R      +
Sbjct: 87  KYGIKYYVIR---------IDDIVDSYSA----MPFFNINYNIPTGNLRARIRMN----I 129

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              +Y     Y+      R  +      +    Y               P+G + K  VR
Sbjct: 130 LY-YYANLHNYIVVGTGDRSEILIGYFTK----YGDGGVD-------ILPIGSLFKTQVR 177

Query: 202 DLAREMGLD 210
            +   +GL 
Sbjct: 178 KMGDYLGLP 186


>gi|85710077|ref|ZP_01041142.1| GMP synthase [Erythrobacter sp. NAP1]
 gi|85688787|gb|EAQ28791.1| GMP synthase [Erythrobacter sp. NAP1]
          Length = 524

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + RV+  +SGGVDS+V A L+    G  +  V      ++L  + +              
Sbjct: 226 EGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVYVDHGLMRLNETEQVVSLFR-------- 277

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-- 131
                  D  N+     D EE F             AG   +   +  R       +   
Sbjct: 278 -------DHYNIPLIAVDAEETF------------LAGLAGVTDPEKKRKFIGGAFIDLF 318

Query: 132 --VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +++ GAD LA G      +          +  +           +    ++   +L
Sbjct: 319 EAEAKKVGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMEL 371

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR+L RE+GL 
Sbjct: 372 VEPLRELFKDEVRELGRELGLP 393


>gi|260551320|ref|ZP_05825521.1| GMP synthetase [Acinetobacter sp. RUH2624]
 gi|260405634|gb|EEW99125.1| GMP synthetase [Acinetobacter sp. RUH2624]
          Length = 522

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E+RF NA          AGE      +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEQRFLNA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|253578181|ref|ZP_04855453.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850499|gb|EES78457.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 282

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 45/228 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARRVCD 81
           V VA S GVDS+    LLK   +DV+G        +  +    SC   + ++ +A+  C+
Sbjct: 18  VAVAFSSGVDST---FLLKVA-HDVLG-------DKAIAITAQSCSFPKRELNEAKAFCE 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              + H V    E      I  F+        P  C  C + + F  +  + ++ G + +
Sbjct: 67  KEGIQH-VICQSEELE---IEGFSK-----NPPNRCYLCKKEL-FEKIGDIAKKNGIEYI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A G        + D+G  R  +    +        L   +  +          + K  +R
Sbjct: 117 AEG------SNMDDNGDYRPGLIAVKE--------LGVKSPLREAK-------LTKAEIR 155

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           + ++E+GL   DK      C   +  Y + +     G+  + + + L+
Sbjct: 156 EYSKELGLSTWDKQSF--ACLSSRFVYGETISEEKLGMVEKAEQLLLD 201


>gi|289191566|ref|YP_003457507.1| GMP synthase, large subunit [Methanocaldococcus sp. FS406-22]
 gi|288938016|gb|ADC68771.1| GMP synthase, large subunit [Methanocaldococcus sp. FS406-22]
          Length = 310

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 42/203 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +  KD R ++A+SGGVDSSV A L  +  G ++  V +     RK  + +       
Sbjct: 14  EIKQQIKDRRAIIALSGGVDSSVAAVLTHKAIGNNLTAVFVDTGLMRKGEREEVERTFR- 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    D + ++  V D ++RF  A           G T     +  R +     + 
Sbjct: 73  ---------DKLGLNLIVVDAKDRFLEA---------LKGVT---DPEEKRKIIGKLFID 111

Query: 132 ----VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               V  ++ A+VL  G      +      K    +                     + +
Sbjct: 112 VFEEVAEEIKAEVLVQGTIAPDWIETQGKIKSHHNVA---------------LPHGMVLE 156

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL ++ K+ VR LA+E+GL 
Sbjct: 157 VVEPLRELYKDEVRLLAKELGLP 179


>gi|225569309|ref|ZP_03778334.1| hypothetical protein CLOHYLEM_05391 [Clostridium hylemonae DSM
           15053]
 gi|225162108|gb|EEG74727.1| hypothetical protein CLOHYLEM_05391 [Clostridium hylemonae DSM
           15053]
          Length = 272

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 60/206 (29%)

Query: 23  VVVAMSGGVDSSVVAALLK-------RDGYDVIGVT-L-QLYNSRKASKRKGSCCAGQDV 73
           VVVA SGG DS   A LL+        +G DV  VT + +L+              G D+
Sbjct: 23  VVVAFSGGADS---ALLLRAACDAALENGTDVYAVTVMTKLH-------------PGSDL 66

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             ARRV   +   H V + +E     +                C  C +++ F  + ++ 
Sbjct: 67  DTARRVAREMGALHRVLEIDELDEAGIKENPVDR---------CYRCKKSI-FRKIRALA 116

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL- 192
             L    +  G          DD    R   + +                    +  PL 
Sbjct: 117 ETLNVRCVLEG-------TNEDDLHEYRPGLKALKEL----------------RILSPLA 153

Query: 193 -GDMKKESVRDLAREMGLDIADKSDS 217
              + K+ VR+LAR  G+ +A++  S
Sbjct: 154 QCHITKQEVRELARRRGVSVAERPAS 179


>gi|323465786|gb|ADX69473.1| Bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus helveticus H10]
          Length = 525

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G      
Sbjct: 223 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGDQVMQA 279

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 280 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEQKRKIIGKEFIE 320

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   + LA G        V + G       +           +    +    
Sbjct: 321 VFNEEAKKLKDVNFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L   +G+ 
Sbjct: 371 KLIEPLRKLFKDEVRELGERLGIP 394


>gi|222055275|ref|YP_002537637.1| GMP synthase, large subunit [Geobacter sp. FRC-32]
 gi|254800100|sp|B9M9G4|GUAA_GEOSF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221564564|gb|ACM20536.1| GMP synthase, large subunit [Geobacter sp. FRC-32]
          Length = 520

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 45/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGGVDSSV AAL+ R  G  +  V      L+L    +                
Sbjct: 224 RVILGLSGGVDSSVAAALIHRAIGEQLTCVFVDNGLLRLGEGDQVMATF----------- 272

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                  + V     D E+RF             +    +   +  R +     + +  +
Sbjct: 273 ----AQNLGVKVIRVDAEDRF------------LSALAGVSDPEKKRKIIGGLFVEIFEE 316

Query: 136 -----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                  A  LA G      +        +    +           +    +     L  
Sbjct: 317 ESNKITDARWLAQGTIYPDVIESAGAKTGKAHNIKSHHN-------VGGLPEHMKLKLLE 369

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 370 PLRELFKDEVRAIGEELGLP 389


>gi|320165389|gb|EFW42288.1| GMP synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 687

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 32/209 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+V +SGGVDSSV AALL +      V+ + +     R+   +  S   G       
Sbjct: 224 DKKVLVLVSGGVDSSVCAALLTKAINPDRVVALHIDNGFMRQDESKLVSVSLGH------ 277

Query: 78  RVCDTINVSHYVFDYEERF---------RNAVIVPFASSYAAGETPLP--CVDCNRTVKF 126
                + ++  V D  E F         R+ V             P     +  +  ++ 
Sbjct: 278 -----LGLNLRVVDASETFYNATTTITARDRVTKYETKKLKETTAPEEKRKIVGDTFMRV 332

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYFLFATTQQ 183
           +       +         +  +  L          +     D  +   + +  +    + 
Sbjct: 333 A---ETAVKDLNLRPEDVYLAQGTLRPDLIESASSLASSAADAIKTHHNDTELVRELRK- 388

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIA 212
            L  +  PL D  K+ VR+L +++GL   
Sbjct: 389 -LGRVIEPLKDYHKDEVRELGKKLGLPTE 416


>gi|312143485|ref|YP_003994931.1| NAD+ synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904136|gb|ADQ14577.1| NAD+ synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 260

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 31/190 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DSS+ + L K+            +               QD  DA    +  
Sbjct: 34  VVGLSGGIDSSLTSLLCKKA-----------FPDNTLGLILPCQSNEQDQIDAIAHAEKF 82

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + + + D +  ++  V      +     T +  ++ ++ +K   L +V  +L    L  
Sbjct: 83  EIDYKIIDLKNTYQEFVKSLNLDNLDRFSTSIKNINGDQKLKL-ALANVKPRLRMAYLYF 141

Query: 144 GHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
              + + L VG D +    +    +  D   D                  PL ++ K  V
Sbjct: 142 YANLNNYLVVGTDNRSELKLGYFTKFGDGGID----------------LAPLANLTKTEV 185

Query: 201 RDLAREMGLD 210
           R  A E+ + 
Sbjct: 186 RKTAAELNIA 195


>gi|254513982|ref|ZP_05126043.1| GMP synthetase [gamma proteobacterium NOR5-3]
 gi|219676225|gb|EED32590.1| GMP synthetase [gamma proteobacterium NOR5-3]
          Length = 524

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +  +           
Sbjct: 226 DDHVLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMEMF--------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                    + V     D E+ F + +             G T +   D           
Sbjct: 277 ------AQNMGVKVIRSDSEKLFLDRLAGESDPEKKRKIIGNTFIEVFDQ---------- 320

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +R  G   LA G      +        +  + +           +    +    +L  
Sbjct: 321 EASRIEGVRWLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMALELVE 373

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 374 PLRELFKDEVRKIGLELGLP 393


>gi|218245564|ref|YP_002370935.1| GMP synthase [Cyanothece sp. PCC 8801]
 gi|257058608|ref|YP_003136496.1| GMP synthase [Cyanothece sp. PCC 8802]
 gi|226738435|sp|B7JXM2|GUAA_CYAP8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218166042|gb|ACK64779.1| GMP synthase, large subunit [Cyanothece sp. PCC 8801]
 gi|256588774|gb|ACU99660.1| GMP synthase, large subunit [Cyanothece sp. PCC 8802]
          Length = 542

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 25/195 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG      +++D    
Sbjct: 238 DKRVLLALSGGVDSSTLAFLLHRA----IGDNLTCMFIDQGFMRKGEPERLVEIFD---- 289

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++     +   RF      V  P        ET    +  +  ++       + +L
Sbjct: 290 -KQFHIPVEYVNARTRFLEQLAGVTDP--------ETKRRLIG-HEFIQV--FEEESERL 337

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D LA G      +   D     +   R     +   + +    +     L  PL  +
Sbjct: 338 GPFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSH-HNVGGLPKNLRFKLVEPLRKL 396

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L R +GL 
Sbjct: 397 FKDEVRKLGRAIGLP 411


>gi|161506835|ref|YP_001576789.1| GMP synthase [Lactobacillus helveticus DPC 4571]
 gi|160347824|gb|ABX26498.1| GMP synthase [Lactobacillus helveticus DPC 4571]
          Length = 494

 Score = 67.5 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G      
Sbjct: 192 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGDQVMQA 248

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 249 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEQKRKIIGKEFIE 289

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   + LA G        V + G       +           +    +    
Sbjct: 290 VFNEEAKKLKDVNFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 339

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L   +G+ 
Sbjct: 340 KLIEPLRKLFKDEVRELGERLGIP 363


>gi|229180948|ref|ZP_04308283.1| Argininosuccinate synthase [Bacillus cereus 172560W]
 gi|228602505|gb|EEK59991.1| Argininosuccinate synthase [Bacillus cereus 172560W]
          Length = 411

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  KKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|229198789|ref|ZP_04325485.1| Argininosuccinate synthase [Bacillus cereus m1293]
 gi|228584722|gb|EEK42844.1| Argininosuccinate synthase [Bacillus cereus m1293]
          Length = 411

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  KKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|325478807|gb|EGC81917.1| TIGR00268 family protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 286

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 90/237 (37%), Gaps = 59/237 (24%)

Query: 9   LNSLDLDKNPKDMRV--------VVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNS 57
           ++S + +K   + R+        V+A SGGVDSS++  L   L+ +  DV+ + +   N+
Sbjct: 1   MDSFNENKEKLNKRIKELLEDKFVLAFSGGVDSSLILKLASDLREEENDVVAI-MYNTNT 59

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                         D+ +A+ + D ++V   V +         I  F + +    T   C
Sbjct: 60  TPDG----------DLDNAQNLADDMDVKLEVVN---------IDVFDNEHIKNNTIDRC 100

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C   + F     +  +LG   +  G  +       DD K  R   + ++         
Sbjct: 101 YHCKSFL-FEQAFKLKDKLGYKYVVDGSNL-------DDNKVFRPGVKALND-------- 144

Query: 178 FATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
                     +  PL +    KE VR  A+E+G+ +  +  +   C   +  Y +++
Sbjct: 145 --------KGVVSPLKECGFTKEMVRAYAKELGVSVYKRPSAP--CLATRFPYNELI 191


>gi|319957802|ref|YP_004169065.1| thiamine biosynthesis protein:exsb [Nitratifractor salsuginis DSM
           16511]
 gi|319420206|gb|ADV47316.1| thiamine biosynthesis protein:ExsB [Nitratifractor salsuginis DSM
           16511]
          Length = 328

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 33/184 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR +   SGG+DS +   L+   G DV  + + +          G    G      +R  
Sbjct: 1   MRAISLFSGGLDSMLAVKLMTEQGIDVTALYVHI----------GFGSTGDVSEQLKRRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL---- 136
           +       + D  E +   ++  F   Y  G+   PC+DC+       +  + R L    
Sbjct: 51  ELAGADFRMVDVREDYIQNIL--FDPVYGYGKNFNPCIDCH-----GYMFKIARALMPEE 103

Query: 137 GADVLATGHYIRSRLYVG-DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GA  L TG  +  R      D  R+       + ++           + L     P    
Sbjct: 104 GASFLVTGEVVGQRPMSQRPDALRQVSKLAGDNEDK--------LILRPLSAKLLPP--- 152

Query: 196 KKES 199
            K  
Sbjct: 153 TKPE 156


>gi|297529083|ref|YP_003670358.1| argininosuccinate synthase [Geobacillus sp. C56-T3]
 gi|297252335|gb|ADI25781.1| argininosuccinate synthase [Geobacillus sp. C56-T3]
          Length = 406

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKLVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D ++ F N   +    + A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G         G+D  R  +  + ++ + D    +    +               
Sbjct: 110 AVAVAHG-----CTGKGNDQVRFEVSIKALNPDLD---VIAPVREWSWSR---------- 151

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E   + A++ G+ I    DS
Sbjct: 152 EEEIEYAKKHGIPIPVDLDS 171


>gi|325678174|ref|ZP_08157803.1| TIGR00268 family protein [Ruminococcus albus 8]
 gi|324110066|gb|EGC04253.1| TIGR00268 family protein [Ruminococcus albus 8]
          Length = 267

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 72/216 (33%), Gaps = 57/216 (26%)

Query: 24  VVAMSGGVDSS--VVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             A SGGVDS+  + AA  K   G +VI VT                   +++ DA  +C
Sbjct: 22  AAAFSGGVDSAFLLAAA--KEALGDEVIAVT-----------AVSPSLPKRELADAEALC 68

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             ++V   V  ++              Y        C  C   + F+ +L +  + G   
Sbjct: 69  RQLSVRLTV--FQSDELE------LEEYRK-NPKNRCYYCKHRL-FTRILEIAEKNGLAH 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL--RFPL--GDMK 196
           +  G          DDG  R  M                   Q L  L    PL      
Sbjct: 119 VIEG------SNKDDDGDYRPGM-------------------QALAKLGIISPLRECGFT 153

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           K  +R L++EMGL   DK  +   C   +  Y D +
Sbjct: 154 KAEIRRLSQEMGLPTYDKPSA--ACLASRIPYGDEI 187


>gi|167044130|gb|ABZ08813.1| putative PP-loop family protein [uncultured marine crenarchaeote
           HF4000_APKG5C13]
          Length = 267

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 51/226 (22%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           + ++ T+L +   DKN     ++VA+SGGVDS++VA               +L  S  A 
Sbjct: 1   MKAQLTKLLNWFDDKNS----ILVALSGGVDSALVAYS----------AYTKLGKSAIAV 46

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                  A +++  A+++   I + H V +Y E    + +               C  C 
Sbjct: 47  TADYKTLAQEELEYAKKISSEIGIKHIVIEYNELDNESFVK---------NDNNRCFYCR 97

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             +    LL V ++   D++  G        + D G  R  +    +             
Sbjct: 98  SELS-EHLLQVAKEFETDMIVDG------TNIDDLGDYRPGVLALRENG----------- 139

Query: 182 QQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
                 +R PL +    K+ VR++A+ +GL + DK  +   C   +
Sbjct: 140 ------IRSPLAETKFSKKMVREVAKNVGLSVYDKPSN--SCLASR 177


>gi|212638551|ref|YP_002315071.1| NH3-dependent NAD+ synthetase [Anoxybacillus flavithermus WK1]
 gi|212560031|gb|ACJ33086.1| NH3-dependent NAD+ synthetase [Anoxybacillus flavithermus WK1]
          Length = 246

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 50/232 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVA L+KR            + +             +D  DA +V  + 
Sbjct: 25  IVGISGGIDSAVVAHLIKRA-----------FPNNSLGLIMPCKSNPKDKEDALKVVQSC 73

Query: 84  NVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQLGA 138
            + ++V D  E  R     +           E      D N    ++ + L +V    G 
Sbjct: 74  GIDYHVIDLTETHRVLFGEIEKQLKEKGQWNEQAARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 LVVGTDNAAEWHTGYFTKYGDGGVDLV--------------------------PLVHFTK 167

Query: 198 ESVRDLAREMGLD--IADKSDSQDICFV-----QQGKYFDVVKRINAGIALE 242
             VR++AR +G+   I  K+ S  +        + G  +D++ +   G  + 
Sbjct: 168 GEVREMARILGVPEEIITKAPSAGLWEGQTDENEMGTTYDMIDKYLKGEPIP 219


>gi|148259910|ref|YP_001234037.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acidiphilium cryptum JF-5]
 gi|326403136|ref|YP_004283217.1| GMP synthase [Acidiphilium multivorum AIU301]
 gi|146401591|gb|ABQ30118.1| GMP synthase (glutamine-hydrolyzing) [Acidiphilium cryptum JF-5]
 gi|325049997|dbj|BAJ80335.1| GMP synthase [Acidiphilium multivorum AIU301]
          Length = 520

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 64/194 (32%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV AAL+    G  ++ +              G   AG+     R   
Sbjct: 224 RVICGLSGGVDSSVAAALIHEAIGDQLVCIF----------VDHGLLRAGEADEVVRVFR 273

Query: 81  DTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           D  N+     D  + F      V  P       G   +                  + L 
Sbjct: 274 DRFNIRLVHRDASDLFFAALEGVTDPEVKRKTIGRLFIEV-----------FEEEAKNLG 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LA G      +           + +           +     +    L  PL ++ 
Sbjct: 323 GADFLAQGTLYPDVIESVSARGGPSAVIKSHHN-------VGGLPDRMRMKLVEPLRELF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L RE+GL 
Sbjct: 376 KDEVRELGRELGLP 389


>gi|308510318|ref|XP_003117342.1| hypothetical protein CRE_01794 [Caenorhabditis remanei]
 gi|308242256|gb|EFO86208.1| hypothetical protein CRE_01794 [Caenorhabditis remanei]
          Length = 707

 Score = 67.1 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 45/210 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQL----YNSRKASKRKGSCCAGQDV 73
           D +V+V +SGGVDS+V AALL R  G + V  + +      +    A ++          
Sbjct: 234 DKKVLVMVSGGVDSAVCAALLSRALGPNRVTAIHIDNGFMRHEESDAVEKSL-------- 285

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PC--------VDCNRTV 124
                    +N+  + ++Y   FR++           GE  L  C        +  N  +
Sbjct: 286 -------AALNLPVHRYNYGTTFRSS-----GEHAQEGEMSLDECDDPELKRRIIGNTFI 333

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFAT 180
           +  DL+   + L        +++       D  +    +     D  +   + +  +   
Sbjct: 334 RVKDLI--MKDLNITH--EEYFLAQGTLRPDLIESASALASGHADTIKTHHNDTALVRDL 389

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  +  PL D  K+ VR+L +++GL 
Sbjct: 390 RN--LGKVVEPLKDFHKDEVRELGKDLGLP 417


>gi|329850812|ref|ZP_08265657.1| GMP synthase, C-terminal domain-containing protein [Asticcacaulis
           biprosthecum C19]
 gi|328841127|gb|EGF90698.1| GMP synthase, C-terminal domain-containing protein [Asticcacaulis
           biprosthecum C19]
          Length = 514

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 62/198 (31%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDSSV A L+    G  +  V     ++    K +G          A+ V 
Sbjct: 218 KVICGLSGGVDSSVAAVLIHEAIGEQLTCVF---VDTGLLRKEEG----------AQVVA 264

Query: 81  ---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-----FSDLLSV 132
              D  N+     + +E F            A      P        K     F      
Sbjct: 265 LFRDHYNIPLIHVEAQELFLG----------ALAGIDDPETKRKTIGKLFIDVFDA--EA 312

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +  GA  LA G      +           + +           +          L  PL
Sbjct: 313 AKIDGAQFLAQGTLYPDVVESVSPSGGPSAVIKSHHN-------VGGLPDYMELKLVEPL 365

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L RE+GL 
Sbjct: 366 RELFKDEVRALGRELGLS 383


>gi|299771967|ref|YP_003733993.1| GMP synthase [Acinetobacter sp. DR1]
 gi|298702055|gb|ADI92620.1| GMP synthase [Acinetobacter sp. DR1]
          Length = 522

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   D +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGDEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E+RF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEQRFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLEFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|167629769|ref|YP_001680268.1| hypothetical protein HM1_1687 [Heliobacterium modesticaldum Ice1]
 gi|167592509|gb|ABZ84257.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 275

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 67/207 (32%), Gaps = 46/207 (22%)

Query: 14  LDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L    ++M  V+VA SGGVDS+    LLK   +DV+G          A            
Sbjct: 16  LQSALREMGHVLVAFSGGVDST---FLLKAA-HDVLG------ERVLAVMGISQTVPKHQ 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V +AR +   I          + F              G  P  C  C   + F  L  +
Sbjct: 66  VAEARELASRIGAPLLTVS-TDEFSREAF------VKNG--PDRCFHCKTAL-FETLWQI 115

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                   +  G+         D G  R  M     +                  +R PL
Sbjct: 116 AEDRQIPYILDGNNA------DDVGDYRPGMMAARRMN-----------------VRSPL 152

Query: 193 --GDMKKESVRDLAREMGLDIADKSDS 217
               + K  +R L++E+GL   +++ S
Sbjct: 153 LEAGLTKAEIRSLSKELGLPTWNQAAS 179


>gi|307544220|ref|YP_003896699.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Halomonas elongata DSM 2581]
 gi|307216244|emb|CBV41514.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Halomonas elongata DSM 2581]
          Length = 589

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 67/195 (34%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL R  G  +  V     ++    K +G             
Sbjct: 291 DRHVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRKDEGDQVMKTFSS---- 343

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               + V     D EE+F      V  P A     G T +          F       + 
Sbjct: 344 ---HMGVRVIRVDAEEQFLSRLEDVHDPEAKRKIIGNTFIDV--------FDA--EAAKI 390

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G + LA G      +        +  + +           +    +     L  PL ++
Sbjct: 391 EGVEFLAQGTIYPDVIESAAAKTGKAHVIKSHHN-------VGGLPETMKLQLVEPLREL 443

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 444 FKDEVRKLGVELGLP 458


>gi|312134229|ref|YP_004001567.1| nad+ synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774280|gb|ADQ03767.1| NAD+ synthetase [Caldicellulosiruptor owensensis OL]
          Length = 540

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            DK     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FDKTGITKKAVVGLSGGIDSSVVCCLAVEALGKENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DAR++ + + +   V+  EE F+
Sbjct: 328 SLKDARKLAENLGIEFRVYSIEEPFK 353


>gi|76802549|ref|YP_327557.1| NAD synthetase [Natronomonas pharaonis DSM 2160]
 gi|76558414|emb|CAI50005.1| NAD(+) synthase (glutamine-hydrolyzing) 1 [Natronomonas pharaonis
           DSM 2160]
          Length = 275

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 70/191 (36%), Gaps = 41/191 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R V+ +SGG+DS+ VA L     G D V G+++             S     D  DA RV
Sbjct: 44  RAVLGLSGGIDSTTVAYLAVAALGPDRVHGISM-----------PSSVNPDDDETDAERV 92

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++   V D      N ++  F  +             N  V+   +L+       D
Sbjct: 93  ANALDIEFDVIDI-----NPIVDAFVDAAPDHAADDRMALGNVRVRTRAVLNYFVANAED 147

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   RS    G                    YF     Q   C+   P+G++ K  
Sbjct: 148 GLVLGTGNRSEAATG--------------------YFTKYGDQAVDCN---PIGNLYKCQ 184

Query: 200 VRDLAREMGLD 210
           VR LARE+G+ 
Sbjct: 185 VRQLARELGVP 195


>gi|284928867|ref|YP_003421389.1| GMP synthase [cyanobacterium UCYN-A]
 gi|284809326|gb|ADB95031.1| GMP synthase (glutamine-hydrolyzing) [cyanobacterium UCYN-A]
          Length = 544

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 25/202 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            + K  KD +V++A+SGGVDSS +A LL +     IG  L      +   RKG       
Sbjct: 233 GIRKKVKDRKVLLALSGGVDSSTLAFLLHQA----IGDNLTCMFIDQGFMRKGEPERLVS 288

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           ++         ++     D  ERF      ++ P    +  G                  
Sbjct: 289 IF-----SKQFHIPVEYVDARERFIKKLEGIVDPEEKRHLIGHEF-----------IQVF 332

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              +++LG  D LA G      +   D         R     +   + +    +     L
Sbjct: 333 EEESQRLGPFDYLAQGTLYPDVIESADTNINSSTGERVAVKIKSH-HNVGGLPKNLRFKL 391

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR + + +GL 
Sbjct: 392 VEPLRKLFKDEVRRVGQSIGLP 413


>gi|319786829|ref|YP_004146304.1| argininosuccinate synthase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465341|gb|ADV27073.1| argininosuccinate synthase [Pseudoxanthomonas suwonensis 11-1]
          Length = 414

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 74/227 (32%), Gaps = 39/227 (17%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M  + +T   S   +       +V+A SGG+D+S     LK  G++V  V          
Sbjct: 1   MSQAASTNPESQSPNPAAASRDIVLAFSGGLDTSFCVPYLKEQGWNVHTVF--------- 51

Query: 61  SKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                     ++     +    + V SH   D      N  + PF  +    +   P + 
Sbjct: 52  --ADTGGVDAEERAYIEQRAAELGVASHVTIDGGAAIWNGFVKPFVQAGEGYQGQYPLLV 109

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            +R +     L    +LG + +A G                   C  M    DQ  F  A
Sbjct: 110 SDRYLIVDAALKRAAELGTNAIAHG-------------------CTGM--GNDQVRFDLA 148

Query: 180 TTQQQLCDLRFPLGDMKKE--SVR----DLAREMGLDIADKSDSQDI 220
              Q    +  P+ +++KE    R        E G ++  K  S  I
Sbjct: 149 VKAQGDYRIVAPIREIQKEHTQTRAYEQKYLEERGFEVRAKQKSYTI 195


>gi|148926245|ref|ZP_01809930.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205356267|ref|ZP_03223033.1| GMP synthase (glutamine hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|145845416|gb|EDK22509.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205345872|gb|EDZ32509.1| GMP synthase (glutamine hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 511

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++ 
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +T+ +     D  E F + +                 +  N  +         ++
Sbjct: 267 -----NTLGIDLISIDASEIFLSRLANVTDPEQKRK------IIGNTFI--EVFEEEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRALGLELGLS 380


>gi|254473501|ref|ZP_05086898.1| GMP synthase - glutamine amidotransferase protein [Pseudovibrio sp.
           JE062]
 gi|211957617|gb|EEA92820.1| GMP synthase - glutamine amidotransferase protein [Pseudovibrio sp.
           JE062]
          Length = 515

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDSSV A L+    G  +  +      +++  + +              
Sbjct: 217 DKKVICGLSGGVDSSVAAVLIHEAIGDQLTCIYVDHGLMRMGETEQ---------VLSMF 267

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLS 131
            D        N+     D  + F              GE+  P V      K        
Sbjct: 268 RD------HYNIPLVHVDASDLFIGQ---------LEGESD-PEVKRKTIGKLFIEVFEE 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++L GAD LA G      +          +  +           +    ++    L  
Sbjct: 312 EAKKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLVE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VRDL RE+GL 
Sbjct: 365 PLRELFKDEVRDLGRELGLP 384


>gi|254420777|ref|ZP_05034501.1| ExsB family [Brevundimonas sp. BAL3]
 gi|196186954|gb|EDX81930.1| ExsB family [Brevundimonas sp. BAL3]
          Length = 520

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 72/228 (31%), Gaps = 40/228 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V +     RK   ++ +    +       
Sbjct: 222 DAKVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDTGLLRKDEAKQVTTLFREHY----- 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
                N+     D  + F            A    P         V          ++ G
Sbjct: 277 -----NIPLVHVDASKEF--------LGELAGQSDPETKRKIIGRVFIEIFDREANKVEG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +        +  + +           +          L  PL ++ K
Sbjct: 324 AEFLAQGTLYPDVIESVSSSSGKAHVIKSHHN-------VGGLPDYMKLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           + VR L RE+GL  A         FV +  +          I + G+I
Sbjct: 377 DEVRALGRELGLSDA---------FVGRHPFPG----PGLAIRIPGEI 411


>gi|227888915|ref|ZP_04006720.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850503|gb|EEJ60589.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus johnsonii ATCC 33200]
          Length = 517

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ +   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 204 TMDDFIEMQVDEIRQKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + +ERF N            G T     + 
Sbjct: 261 RKDEGDQVMQALNKD-------LGVNIIRVNAQERFLNR---------LKGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 386


>gi|119476442|ref|ZP_01616793.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2143]
 gi|119450306|gb|EAW31541.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2143]
          Length = 526

 Score = 67.1 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 27/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL R  G  +  V            RK       D++      
Sbjct: 230 KVLLGLSGGVDSSVVAALLHRAIGSQLTCVF-----VDNGLLRKNEGDQVMDMF-----A 279

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGAD 139
             + V     D  + F   ++                +  N  +  F            +
Sbjct: 280 KNMGVKVIRADAADIFLGNLVGESDPEKKRK------IIGNTFIDIFDQ--QAALIQDVN 331

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +        +  + +           +          L  PL ++ K+ 
Sbjct: 332 WLAQGTIYPDVIESAAGKTGKAHVIKSHHN-------VGGLPDDMQFKLIEPLRELFKDE 384

Query: 200 VRDLAREMGLD 210
           VR +  E+GL 
Sbjct: 385 VRKIGLELGLP 395


>gi|228993360|ref|ZP_04153276.1| Argininosuccinate synthase [Bacillus pseudomycoides DSM 12442]
 gi|228766428|gb|EEM15071.1| Argininosuccinate synthase [Bacillus pseudomycoides DSM 12442]
          Length = 403

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 4   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLEFVKE 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +     +   E   P V   +R +    L+ +  Q 
Sbjct: 51  KALSVGAIKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 110

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 111 GASAVAHG 118


>gi|228999413|ref|ZP_04158992.1| Argininosuccinate synthase [Bacillus mycoides Rock3-17]
 gi|229006968|ref|ZP_04164597.1| Argininosuccinate synthase [Bacillus mycoides Rock1-4]
 gi|228754286|gb|EEM03702.1| Argininosuccinate synthase [Bacillus mycoides Rock1-4]
 gi|228760358|gb|EEM09325.1| Argininosuccinate synthase [Bacillus mycoides Rock3-17]
          Length = 403

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 4   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLEFVKE 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +     +   E   P V   +R +    L+ +  Q 
Sbjct: 51  KALSVGAIKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 110

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 111 GASAVAHG 118


>gi|268318799|ref|YP_003292455.1| GMP synthase [Lactobacillus johnsonii FI9785]
 gi|262397174|emb|CAX66188.1| GMP synthase [Lactobacillus johnsonii FI9785]
          Length = 517

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ +   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 204 TMDDFIEMQVDEIRQKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + +ERF N            G T     + 
Sbjct: 261 RKDEGDQVMQALNKD-------LGVNIIRVNAQERFLNR---------LKGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 386


>gi|15606275|ref|NP_213654.1| NH(3)-dependent NAD+ synthetase [Aquifex aeolicus VF5]
 gi|6093465|sp|O67091|NADE_AQUAE RecName: Full=Probable glutamine-dependent NAD(+) synthetase;
           AltName: Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|2983464|gb|AAC07044.1| NH(3)-dependent NAD+ synthetase [Aquifex aeolicus VF5]
          Length = 567

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 39/217 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           +  A +L+  D  +     +VV+ +SGG+DSS VA L     G + V GV +        
Sbjct: 293 IYAALKLSLRDYVRKNGFEKVVLGLSGGIDSSFVACLAVDALGRENVKGVYM-------- 344

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                   + +   DA+ +   + +  +V   +E +R         +Y        C   
Sbjct: 345 ---PSQFSSKESYEDAKALAQNLGIEFHVIPIKEIYR---------AYFNEFEKEICEIT 392

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                      V  +            R R  +      +          + ++   + T
Sbjct: 393 ---------FDVADE--------NIQARIRANILFYFSNKFRYLVLSTSNKSETAVGYTT 435

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDS 217
               +     P+ D+ K  V  LAR       D  + 
Sbjct: 436 IYGDMAGGFAPIKDVYKTWVYKLARYRNSISPDIPER 472


>gi|76803253|ref|YP_331348.1| argininosuccinate synthase [Natronomonas pharaonis DSM 2160]
 gi|119361295|sp|Q3IME2|ASSY_NATPD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|76559118|emb|CAI50717.1| argininosuccinate synthase [Natronomonas pharaonis DSM 2160]
          Length = 400

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 35/197 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +A SGG+D++V   LL+ + GYD VIGVT                    +  +A   
Sbjct: 6   RVALAFSGGLDTTVCVPLLEEEYGYDEVIGVT------------VDVGQPEAEFKEAEET 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +++ H+V D +  F         ++ +    PL      R V    +L V ++ G  
Sbjct: 54  AEALDLEHHVVDAKPEFAELCFDAVRANASYQGYPLGTALA-RPVIAEAILEVAKEEGCS 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A G         G+D  R   + R  DLE      +    +  L            E 
Sbjct: 113 GVAHG-----STGKGNDQLRFEAVWRDSDLE-----VIAPVRELGLTRTF--------EQ 154

Query: 200 VRDLAREMGLDIADKSD 216
             + A E GL I    +
Sbjct: 155 --EYAEERGLPIEGGDE 169


>gi|295097951|emb|CBK87041.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 525

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  +      P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVEGEQ---RFLDALKGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|321460868|gb|EFX71906.1| hypothetical protein DAPPUDRAFT_308688 [Daphnia pulex]
          Length = 686

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 28/205 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK---RDGYD---VIGVTLQLYNSRKASKRKGSCCAGQD 72
           +D  V++ +SGGVDS+V AALL    + G D   V  + +     RK    +        
Sbjct: 232 RDKIVLMLVSGGVDSAVCAALLHKALQQGDDSSRVQAIHIDNGFLRKDESEQVVTSL--- 288

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                     + ++  V      F +A        + +   T  P  +  R +     + 
Sbjct: 289 --------QQLGLNLRVVKASLTFYDASTNVHGRQTLSLCRTVNP--EEKRRIIGDTFVK 338

Query: 132 VTRQ------LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           V  +      L  D L  G        +             +    + S  +        
Sbjct: 339 VADRTANDLNLTWDNLLLGQGTLRPDLIESASHMASSRADAIKTHHNDSEMVRQLRHH-- 396

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VR L RE+GL 
Sbjct: 397 GRVVEPLKDFHKDEVRALGRELGLP 421


>gi|221638227|ref|YP_002524489.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides KD131]
 gi|221159008|gb|ACL99987.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides KD131]
          Length = 514

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ MSGGVDS++ AAL K  G+ V+G TL +      + R                C  +
Sbjct: 76  VIGMSGGVDSALTAALFKAAGWHVVGHTLPIEQDPTETDRGIE------------ACAAL 123

Query: 84  NVSHYVFDYEERFRNAV-----IVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
            + H   D    +  A+     + P   S  + ETP      N    ++   L     +L
Sbjct: 124 GIEHRPLDLSGAYEAALAHLGELDPDLLS--SDETPARTRRGNLRARLRMMTLYDQAHRL 181

Query: 137 G 137
           G
Sbjct: 182 G 182


>gi|297180723|gb|ADI16931.1| GMP synthase, pp-ATPase domain/subunit [uncultured SAR406 cluster
           bacterium HF0010_18O13]
          Length = 515

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 35/211 (16%)

Query: 4   SEATRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
           S +  +NS+  D+    K+ +V++ +SGGVDSSVVA LL +  G ++I +          
Sbjct: 201 STSDIINSMVSDIKNKVKNEKVLLGLSGGVDSSVVAMLLHKAIGNNLICIF--------- 251

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPC 117
                      +V +     +++++   + D  E F +    V  P       G T +  
Sbjct: 252 --VDHGLLRLGEVDEVMSTFESLDIDIRLVDASELFLSNLSGVTNPEKKRKIIGNTFIE- 308

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V  N   K  D          D LA G      +    D     ++    +        +
Sbjct: 309 VFENEANKIKD---------VDWLAQGTIYPDVIESSSDDHNSSVIKSHHN--------V 351

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
               ++    L  P+ ++ K+ VR +  ++ 
Sbjct: 352 GGLPERMNLKLLEPIRELFKDEVRKIGAQLD 382


>gi|298244268|ref|ZP_06968074.1| PP-loop domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297551749|gb|EFH85614.1| PP-loop domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 48/231 (20%)

Query: 3   VSEATRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +   T+     L +  ++M  V+VA SGGVDS   A LLK   +DV+G      +    +
Sbjct: 15  LDAQTQAKYERLQEILREMESVLVAYSGGVDS---ALLLKVA-HDVLG------DRALGA 64

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
               +  A ++  +A  V   +++     +  E               A  T   C  C 
Sbjct: 65  IASSAAYAPEETQEAIEVATQMSLPLVTLETHELEDERY---------ASNTVQRCYFCK 115

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             + F+ L  V ++     +A G      +   DDG  R       +             
Sbjct: 116 TEL-FTSLEPVAKEHNLRHIAYG------VNKDDDGDFRPGQKAAREFG----------- 157

Query: 182 QQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
                 +R PL   +M K+ +R +A+ +G+ + DK      CF  +  Y  
Sbjct: 158 ------VRGPLKEAEMGKKEIRAIAKMLGMPVWDKP--AMACFSSRIPYGS 200


>gi|229019857|ref|ZP_04176658.1| Argininosuccinate synthase [Bacillus cereus AH1273]
 gi|229026084|ref|ZP_04182465.1| Argininosuccinate synthase [Bacillus cereus AH1272]
 gi|228735237|gb|EEL85851.1| Argininosuccinate synthase [Bacillus cereus AH1272]
 gi|228741464|gb|EEL91663.1| Argininosuccinate synthase [Bacillus cereus AH1273]
          Length = 411

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|53802427|ref|YP_112824.1| GMP synthase [Methylococcus capsulatus str. Bath]
 gi|81683037|sp|Q60C21|GUAA_METCA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|53756188|gb|AAU90479.1| GMP synthase [Methylococcus capsulatus str. Bath]
          Length = 524

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 62/195 (31%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+ +SGGVDSSVVAALL+   G  +  V                     D   A    
Sbjct: 228 RVVLGLSGGVDSSVVAALLQHAIGEQLTCVF---------VDTGLLRLNEGDQVMATF-A 277

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQ 135
           + + V     + EERF                  +   +  R +     +        + 
Sbjct: 278 EHMGVRVIRVNAEERF------------LQALQGIADPEDKRKIIGRLFVEIFDEEAAKI 325

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +  + +           +    +     L  PL ++
Sbjct: 326 EDARWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPETMKLQLVEPLREL 378

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 379 FKDEVRQIGLELGLP 393


>gi|307710245|ref|ZP_07646688.1| argininosuccinate synthase [Streptococcus mitis SK564]
 gi|307619007|gb|EFN98140.1| argininosuccinate synthase [Streptococcus mitis SK564]
          Length = 398

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|206579796|ref|YP_002237144.1| GMP synthase (glutamine-hydrolyzing) [Klebsiella pneumoniae 342]
 gi|288934103|ref|YP_003438162.1| GMP synthase, small subunit [Klebsiella variicola At-22]
 gi|290508301|ref|ZP_06547672.1| GMP synthase [Klebsiella sp. 1_1_55]
 gi|226739635|sp|B5XNM4|GUAA_KLEP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|206568854|gb|ACI10630.1| GMP synthase (glutamine-hydrolyzing) [Klebsiella pneumoniae 342]
 gi|288888832|gb|ADC57150.1| GMP synthase, small subunit [Klebsiella variicola At-22]
 gi|289777695|gb|EFD85692.1| GMP synthase [Klebsiella sp. 1_1_55]
          Length = 525

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  +      P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVEGEQ---RFLDALKGENDPEAKRKIIGRVFVEVFDEEALKLDD 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|160941480|ref|ZP_02088814.1| hypothetical protein CLOBOL_06370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435564|gb|EDP13331.1| hypothetical protein CLOBOL_06370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 288

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 77/231 (33%), Gaps = 58/231 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +A SGGVDSS    LLK         G  V  VT         S+   SC    D+  
Sbjct: 34  ICLAFSGGVDSS---LLLKTAADAAAHTGRKVYAVTF-------DSRLHPSC----DLEI 79

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           ARRV   +   H V   +E  + ++                C  C R + FS L  +   
Sbjct: 80  ARRVAGELGGIHEVITVDELEQESIKNNPV---------NRCYLCKRHL-FSRLAELAEA 129

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-- 193
            G   +  G          DD    R   R +               ++L  +  PL   
Sbjct: 130 RGIRYILDG-------TNEDDMHVYRPGIRAL---------------KELG-IISPLAEL 166

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + K  V+ LA E G+ +A +  +   C   +  Y   +         EG+
Sbjct: 167 HITKAQVKALASEYGISVASRPSTP--CMATRLPYGAALDYEVLRRIGEGE 215


>gi|328463846|gb|EGF35386.1| GMP synthase [Lactobacillus helveticus MTCC 5463]
          Length = 516

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G      
Sbjct: 214 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGDQVMQA 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 271 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEQKRKIIGKEFIE 311

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L     LA G        V + G       +           +    +    
Sbjct: 312 VFNEEAKKLKDVKFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L   +G+ 
Sbjct: 362 KLIEPLRKLFKDEVRELGERLGIP 385


>gi|23014122|ref|ZP_00053956.1| COG0519: GMP synthase, PP-ATPase domain/subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 444

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 64/195 (32%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSVVAALL    G  +  V                    + V    R  
Sbjct: 221 RVICGLSGGVDSSVVAALLHEAIGDQLTCVF--------VDTGFMRAGESEQVVSVFR-- 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           D  N+     D    F +           AG T     +  R +             R +
Sbjct: 271 DRFNIKLVHKDASGLFLDK---------LAGLT---DPEKKRKIIGATFIDVFEEEARAV 318

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD LA G      +          +  +           +    ++    L  PL ++
Sbjct: 319 GGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLREL 371

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L RE+GL 
Sbjct: 372 FKDEVRALGRELGLP 386


>gi|289581434|ref|YP_003479900.1| argininosuccinate synthase [Natrialba magadii ATCC 43099]
 gi|289530987|gb|ADD05338.1| argininosuccinate synthase [Natrialba magadii ATCC 43099]
          Length = 409

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 39/196 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RV +A SGG+D++V   LL+ + GYD VIGVT                    +  +A  
Sbjct: 2   TRVALAFSGGLDTTVCVPLLEEEYGYDEVIGVT------------VDVGQPASEFDEAEE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D +N+ HYV D ++ F +       ++      PL      R V    +L V  +   
Sbjct: 50  TADALNLDHYVVDAKDEFADLCFDSVCANATYQGYPLGTALA-RPVIAEAILEVAEENDC 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
             +A G                   C       DQ  F        L  +  P+ +  + 
Sbjct: 109 TGIAHG-------------------CTGK--GNDQLRFEAVWRDSDLE-VIAPVRELGLT 146

Query: 197 KESVRDLAREMGLDIA 212
           +E  ++ A E GL + 
Sbjct: 147 REWEQEYAAEKGLPVE 162


>gi|254501298|ref|ZP_05113449.1| GMP synthase, C-terminal domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437369|gb|EEE44048.1| GMP synthase, C-terminal domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 524

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 76/238 (31%), Gaps = 60/238 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V                      + +A  
Sbjct: 226 DKKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLNEAEE 271

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D  N+     D  + F                 P       R +     + V +
Sbjct: 272 VVSMFRDNYNIPLIHADETDLF--------LGELDGQSDPE----TKRKIIGKLFIDVFQ 319

Query: 135 QL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +      GA+ LA G      +          +  +           +    ++    L 
Sbjct: 320 KHANEIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLV 372

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            PL ++ K+ VR L RE+GL      +S    F+ +  +         G+A+   G+I
Sbjct: 373 EPLRELFKDEVRALGRELGLP-----ES----FIGRHPF------PGPGLAIRCPGEI 415


>gi|57640128|ref|YP_182606.1| GMP synthase subunit B [Thermococcus kodakarensis KOD1]
 gi|62286909|sp|Q5JFM1|GUAAB_PYRKO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|57158452|dbj|BAD84382.1| GMP synthase, PP-loop-ATPase component [Thermococcus kodakarensis
           KOD1]
          Length = 307

 Score = 66.7 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 67/200 (33%), Gaps = 35/200 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSS  A L  R  G  +  V          +          
Sbjct: 12  EIRETVGDGKAIIALSGGVDSSTAAVLAHRAIGDRLHAVF-------VNTGFMRKGEPEF 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLL 130
            V   R   D   ++ +  D  ERF              G T P         V      
Sbjct: 65  VVKTFR---DEFGLNLHYVDASERFFRE---------LKGVTDPEEKRKIIGRVFIEVFE 112

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V +++ AD L  G      +      K                  +    ++    L  
Sbjct: 113 EVAKEINADFLIQGTIAPDWIESHGKIKSHHN--------------VGGLPERLNLKLIE 158

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR+LA+E+GL 
Sbjct: 159 PLRDLYKDEVRELAKELGLP 178


>gi|288942408|ref|YP_003444648.1| GMP synthase large subunit [Allochromatium vinosum DSM 180]
 gi|288897780|gb|ADC63616.1| GMP synthase, large subunit [Allochromatium vinosum DSM 180]
          Length = 524

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL R  G  +  V      L+L    +                
Sbjct: 228 KVLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLGEGDQVMSTF----------- 276

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                  + V     D EERF   +                 +  N  +          +
Sbjct: 277 ----ARHMGVRVIRVDAEERFLGRLKGVSDPEQKRK------IIGNTFI--EVFDDEASK 324

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L     LA G      +        +  + +           +    ++    L  PL +
Sbjct: 325 LQDVKWLAQGTIYPDVIESAGSKTGKAKVIKSHHN-------VGGLPEEMNLKLVEPLRE 377

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 378 LFKDEVRKIGVELGLP 393


>gi|313124956|ref|YP_004035220.1| argininosuccinate synthase [Halogeometricum borinquense DSM 11551]
 gi|312291321|gb|ADQ65781.1| argininosuccinate synthase [Halogeometricum borinquense DSM 11551]
          Length = 411

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 35/196 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V +A SGG+D++V  +LL+ + GYD V+GVT                    +  +A+   
Sbjct: 4   VALAFSGGLDTTVCVSLLQEEYGYDEVVGVT------------VDVGQPESEFEEAKETA 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D   +  +V D ++ F         ++      PL      R V    +L V ++ G D 
Sbjct: 52  DAHGLDIHVVDAKDEFAELCFDSVRANATYQGYPLGTALA-RPVIAEAILEVAQEEGCDA 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G         G+D  R   + R  DL+      +    +  L        + +K   
Sbjct: 111 LAHG-----CTGKGNDQLRFEAVWRASDLD-----VIAPVREMGLTR------EWEK--- 151

Query: 201 RDLAREMGLDIADKSD 216
              A E  L +   +D
Sbjct: 152 -QYADEKNLPVQAGND 166


>gi|227894459|ref|ZP_04012264.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus ultunensis DSM 16047]
 gi|227863618|gb|EEJ71039.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus ultunensis DSM 16047]
          Length = 516

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G      
Sbjct: 214 EIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGDQVMKA 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    +  +RF +            G T     +  R +   + + 
Sbjct: 271 LNKD-------LGVNIIRVNAADRFLSK---------LKGVT---DPEKKRKIIGKEFIE 311

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L   D LA G        V + G       +           +    +    
Sbjct: 312 VFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L  ++G+ 
Sbjct: 362 KLIEPLRKLFKDEVRELGEKLGIP 385


>gi|320547573|ref|ZP_08041858.1| argininosuccinate synthase [Streptococcus equinus ATCC 9812]
 gi|320447648|gb|EFW88406.1| argininosuccinate synthase [Streptococcus equinus ATCC 9812]
          Length = 396

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           +V++A SGG+D+SV    L+K   YDV+ V              G       ++D A +V
Sbjct: 5   KVILAYSGGLDTSVAITWLMKD--YDVVAV----------CVDVGEGKDLDFIHDKALKV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D ++ F    ++P   ++A  E   P V   +R V    L+ +  + GA
Sbjct: 53  GA---VESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 TTIAHG 115


>gi|148994308|ref|ZP_01823572.1| argininosuccinate synthase [Streptococcus pneumoniae SP9-BS68]
 gi|168489416|ref|ZP_02713615.1| argininosuccinate synthase [Streptococcus pneumoniae SP195]
 gi|147927338|gb|EDK78370.1| argininosuccinate synthase [Streptococcus pneumoniae SP9-BS68]
 gi|183572053|gb|EDT92581.1| argininosuccinate synthase [Streptococcus pneumoniae SP195]
 gi|332075781|gb|EGI86248.1| argininosuccinate synthase [Streptococcus pneumoniae GA17570]
          Length = 398

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|217077779|ref|YP_002335497.1| NAD synthetase [Thermosipho africanus TCF52B]
 gi|217037634|gb|ACJ76156.1| glutamine-dependent NAD+ synthetase [Thermosipho africanus TCF52B]
          Length = 576

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 43/207 (20%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKR 63
           A  L   D  +     +V++ +SGG+DSS+VAA+        +V+G+ +           
Sbjct: 302 AITLGLKDYIQKNGFKKVLIGLSGGMDSSLVAAIAVEALGNKNVVGILM----------- 350

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-- 121
                +   + DA+++ + + + +++    + + +            G T     + N  
Sbjct: 351 PSMYSSSHSIEDAKKLAENLEIEYHIIKISDIYYS--FKNSLKDIFKG-TSEDITEENLQ 407

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             ++ + L++V+ + G  VLATG                  M       +D         
Sbjct: 408 ARIRGTLLMAVSNKFGYIVLATG---NKSEIATGYSTLYGDMVGGFSPIKD--------- 455

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG 208
                        + K  V  +AR   
Sbjct: 456 -------------IYKTDVYKIARWYN 469


>gi|156937500|ref|YP_001435296.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566484|gb|ABU81889.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 383

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K     RV++ +SGG DS V    LLK+ G +V+  T                    +
Sbjct: 40  LKKVELPKRVLLGLSGGKDS-VALLYLLKKVGTEVVAAT--------VDTVPNYTSLEAE 90

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +  A+RV + + V+HY    +E +        A SY       PC  C++  + +  L +
Sbjct: 91  L--AKRVAEELGVTHYTVYAKELY-----GFTALSYKKLRR-APCSICSKLRRHALEL-L 141

Query: 133 TRQLGADVLATGH 145
            R+LG + +ATGH
Sbjct: 142 ARRLGIEYIATGH 154


>gi|18314022|ref|NP_560689.1| GMP synthase [Pyrobaculum aerophilum str. IM2]
 gi|21759181|sp|Q8ZT92|GUAA_PYRAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|18161600|gb|AAL64871.1| GMP synthetase (glutamine-hydrolysing) [Pyrobaculum aerophilum str.
           IM2]
          Length = 505

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 68/203 (33%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++    K   V+V +SGGVDS+V A LL +  G  V  V +          R+G      
Sbjct: 203 EIRSRVKGGDVIVGVSGGVDSTVTAVLLYKAVGQRVKAVFI-----DHGLFREGEP---- 253

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSD 128
              +A  +  +I +     D +ERF   +             GET               
Sbjct: 254 --EEAASLLKSIGIDVVYIDAKERFLKRLEGVADCEEKRRIIGETFAEV----------- 300

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                +Q+     LA G      +  G          +  D  +            QL  
Sbjct: 301 FSDAVKQMPNVKYLAQGTLYPDVVESGA--------VKGADKIKSHHNVGGLPPWFQLE- 351

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL +  K+ VR +A+ +GL 
Sbjct: 352 LIEPLREFYKDEVRRIAKALGLP 374


>gi|254423738|ref|ZP_05037456.1| conserved hypothetical protein TIGR00268 [Synechococcus sp. PCC
           7335]
 gi|196191227|gb|EDX86191.1| conserved hypothetical protein TIGR00268 [Synechococcus sp. PCC
           7335]
          Length = 269

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 47/213 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++A SGG+DS++VA +     +DV+G      +   A          +D  DA+    
Sbjct: 17  RALIAYSGGIDSTLVAKVA----WDVLG------DQALAVTANSPSLMPEDFEDAKTQAA 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++H V +  E                      C  C   +    L  +  +LG D +
Sbjct: 67  QLGIAHRVVETHEMDNEQYTSNPV---------NRCYFCKSEL-HDTLRPLADELGYDYV 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      L   D    R  +    +                   +R PL +  + K  
Sbjct: 117 VDG------LNADDLLDYRPGIAAAKERG-----------------VRSPLAEVGITKLE 153

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           VR+++R++GL   DK  SQ  C   +  Y +++
Sbjct: 154 VREISRQLGLPWWDKP-SQP-CLSSRFPYGELI 184


>gi|209967210|ref|YP_002300125.1| GMP synthase (glutamine-hydrolyzing) [Rhodospirillum centenum SW]
 gi|209960676|gb|ACJ01313.1| GMP synthase (glutamine-hydrolyzing) [Rhodospirillum centenum SW]
          Length = 525

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 71/232 (30%), Gaps = 52/232 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDSSV A L+    G  +  +                        +A+ V 
Sbjct: 229 KVICGLSGGVDSSVAAVLIHEAVGEQLTCIF--------------VDTGLMRAGEAQEVV 274

Query: 81  ----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               D  N+     D  + F      V  P       G   +   D              
Sbjct: 275 TLFRDHYNIPLVHVDAADLFLGELEGVSDPEVKRKTIGRLFIEVFDR----------EAA 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +  GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 325 KIGGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           ++ K+ VR L RE+GL  +         FV +  +          I + G+I
Sbjct: 378 ELFKDEVRALGRELGLPHS---------FVGRHPFPG----PGLAIRVPGEI 416


>gi|289168795|ref|YP_003447064.1| argininosuccinate synthase [Streptococcus mitis B6]
 gi|288908362|emb|CBJ23204.1| argininosuccinate synthase [Streptococcus mitis B6]
          Length = 398

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V +            G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCM----------NVGEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    ++A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVQDEFATDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|302382750|ref|YP_003818573.1| GMP synthase, large subunit [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193378|gb|ADL00950.1| GMP synthase, large subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 519

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 72/230 (31%), Gaps = 48/230 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDSSV A L+    G  +  V +     RK    + +    +         
Sbjct: 223 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDTGLLRKDEATQVTTLFREHY------- 275

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----- 135
              N+     D  + F            A    P       R +     + V  +     
Sbjct: 276 ---NIPLIHVDASKEF--------LGELAGQSDPE----TKRKIIGRVFIEVFDREAGKI 320

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA+ LA G      +        +  + +           +          L  PL ++
Sbjct: 321 DGAEFLAQGTLYPDVIESVSSSSGKAHVIKSHHN-------VGGLPDYMKLKLVEPLREL 373

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            K+ VR L RE+GL  A         FV +  +          I + G+I
Sbjct: 374 FKDEVRALGRELGLTDA---------FVGRHPFPG----PGLAIRIPGEI 410


>gi|260102261|ref|ZP_05752498.1| GMP synthase [Lactobacillus helveticus DSM 20075]
 gi|111610209|gb|ABH11596.1| GMP synthase/glutamine amidotransferase [Lactobacillus helveticus
           CNRZ32]
 gi|260083934|gb|EEW68054.1| GMP synthase [Lactobacillus helveticus DSM 20075]
          Length = 525

 Score = 66.7 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +     K +G      
Sbjct: 223 DIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGMLRKDEGDQVMQA 279

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + V+    + ++RF +            G T     +  R +   + + 
Sbjct: 280 LNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEQKRKIIGKEFIE 320

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     ++L     LA G        V + G       +           +    +    
Sbjct: 321 VFNEEAKKLKDVKFLAQG---TLYTDVIESGTNTAQTIKSHHN-------VGGLPKDMHF 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR+L   +G+ 
Sbjct: 371 KLIEPLRKLFKDEVRELGERLGIP 394


>gi|322378093|ref|ZP_08052579.1| argininosuccinate synthase [Streptococcus sp. M334]
 gi|321280930|gb|EFX57944.1| argininosuccinate synthase [Streptococcus sp. M334]
          Length = 398

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|197116482|ref|YP_002136909.1| thiamin biosynthesis protein ThiI-like adenine nucleotide alpha
           hydrolase superfamily protein [Geobacter bemidjiensis
           Bem]
 gi|197085842|gb|ACH37113.1| thiamin biosynthesis protein ThiI-related adenine nucleotide alpha
           hydrolase superfamily protein [Geobacter bemidjiensis
           Bem]
          Length = 334

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 92/272 (33%), Gaps = 40/272 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV--YDAR 77
             + +  +SGG+DS++   +L   G  V  +          +    +C         +A 
Sbjct: 2   QRKAIALLSGGLDSTLAVKVLLDQGIAVEAL--------NFTSPFCTCTGKNAGCKSEAV 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           RV +   +   V      +   V  P    +  G+   PC+DC        LL   ++  
Sbjct: 54  RVAEEFKIPIKVMHKGADYLEVVRNP---KHGHGKGMNPCIDCRIF-----LLKKAKEYM 105

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQQ 184
              GAD + TG  +  R         R I         + RP+  +  Q           
Sbjct: 106 LESGADFVFTGEVLGQRPMSQRRDTLRIIEKESGLEGLLLRPLSAKHFQPTIPEQEGWVD 165

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
              L    G  +KE   +LA E  LD+ +       C + +  +   ++ +    + E +
Sbjct: 166 REKLLSIQGRSRKEQ-FELAAE--LDVKNYPCPAGGCLLTEPSFVGKIRDVFDH-SDELN 221

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGE 276
           +       LGRH     + IG R  + +   E
Sbjct: 222 MRDFRLLKLGRH-----FRIGPRTKVVLGRNE 248


>gi|121998460|ref|YP_001003247.1| GMP synthase [Halorhodospira halophila SL1]
 gi|121589865|gb|ABM62445.1| GMP synthase (glutamine-hydrolyzing) [Halorhodospira halophila SL1]
          Length = 529

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  VV+ +SGGVDSSV AALL R  G  +  V            R+G      D   A  
Sbjct: 231 DRHVVLGLSGGVDSSVTAALLHRAIGDQLTCVF-----VDNGLLRQG----EADQVMATF 281

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
               + V     D E+RF                + +   +  R +  +  + +  +   
Sbjct: 282 -ARHMGVRVIHIDAEDRF------------LTALSGVEDPEEKRRIIGNLFVEIFDEEAG 328

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              G D LA G      +    +   +  + +           +    +     L  PL 
Sbjct: 329 KLQGVDFLAQGTIYPDVVESAGNAGGKSHVIKSHHN-------VGGLPETMKLKLVEPLR 381

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 382 ELFKDEVRRVGLELGLP 398


>gi|126668433|ref|ZP_01739390.1| GMP synthase, PP-ATPase domain/subunit [Marinobacter sp. ELB17]
 gi|126627142|gb|EAZ97782.1| GMP synthase, PP-ATPase domain/subunit [Marinobacter sp. ELB17]
          Length = 525

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSV AALL +  G  +  V      L+L    +     GS         
Sbjct: 229 KVLLGLSGGVDSSVTAALLHKAIGDQLTCVFVDNGLLRLNEGDQVMDMFGS--------- 279

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-R 134
                 ++ V     D EERF   +                 V  N  +          R
Sbjct: 280 ------SMGVKVIRADAEERFLTNLKGVSDPEQKRK------VIGNTFI--DVFDEEATR 325

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
               + LA G      +        +  + +           +    +     L  PL +
Sbjct: 326 IQNVNWLAQGTIYPDVIESAASKTGKSHVIKSHHN-------VGGLPETMKLKLVEPLRE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 379 LFKDEVRRIGLELGLP 394


>gi|187731505|ref|YP_001881298.1| GMP synthase [Shigella boydii CDC 3083-94]
 gi|226739738|sp|B2TXT2|GUAA_SHIB3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187428497|gb|ACD07771.1| GMP synthase (glutamine-hydrolyzing) [Shigella boydii CDC 3083-94]
          Length = 525

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLIEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|283769417|ref|ZP_06342315.1| GMP synthase (glutamine-hydrolyzing) [Bulleidia extructa W1219]
 gi|283103942|gb|EFC05327.1| GMP synthase (glutamine-hydrolyzing) [Bulleidia extructa W1219]
          Length = 513

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           +V++A+SGGVDSSVVAALL +     IG  L          RKG          A  V  
Sbjct: 217 KVLLALSGGVDSSVVAALLHKA----IGSQLHCMFIDHGLLRKGE---------AESVMK 263

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136
                +N+     D  +RF N +                 V       F D +    + +
Sbjct: 264 TFAKNMNIQLTKVDASKRFLNKLKGVSDPEQKRKIIGNEFVYT-----FQDEVQKLLKGV 318

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               LA G        V + G +     +           +    +     L  PL  + 
Sbjct: 319 DIHWLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDLNFKLIEPLNKLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 369 KDEVRTLGIELGLP 382


>gi|153003258|ref|YP_001377583.1| thiamine biosynthesis protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026831|gb|ABS24599.1| thiamine biosynthesis protein [Anaeromyxobacter sp. Fw109-5]
          Length = 351

 Score = 66.3 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYD 75
           PK  + +  +SGG+DS++  AL++R G +V  VT         ++R+  G         +
Sbjct: 2   PKQGKAIAMISGGLDSTLALALVRRQGVEVKAVTFYTGFCITETQRRKGGRADGAVPRNE 61

Query: 76  ARRVCDTINVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           A R    + V     D     + + ++ P    Y  G    PCVDC   +       +  
Sbjct: 62  ALRAAADLEVDIEYVDISGSEYLDMLVHP---KYGYGANANPCVDCRVFM-MRKAKEIME 117

Query: 135 QLGADVLATGHYIRSRLYVG 154
             GAD + TG  +  R    
Sbjct: 118 AEGADFIFTGEVLGQRPKSQ 137


>gi|294102163|ref|YP_003554021.1| argininosuccinate synthase [Aminobacterium colombiense DSM 12261]
 gi|293617143|gb|ADE57297.1| argininosuccinate synthase [Aminobacterium colombiense DSM 12261]
          Length = 406

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    LK  GY+VI  T+                   D+  A++ 
Sbjct: 4   KKKVVLAYSGGLDTSVATMWLKEQGYEVI--TM-----------TADVGQQVDLEAAKQK 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D ++ F    + P   + A  +   P     +R +    +  V ++  
Sbjct: 51  ALKSGASKAYVMDLKQEFVKEFVWPALKANAMYQGTYPLNSALSRPLIAKVMAMVAKKEN 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 AGAVAHG 117


>gi|116490973|ref|YP_810517.1| argininosuccinate synthase [Oenococcus oeni PSU-1]
 gi|118586470|ref|ZP_01543915.1| argininosuccinate synthase [Oenococcus oeni ATCC BAA-1163]
 gi|122276845|sp|Q04FC0|ASSY_OENOB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116091698|gb|ABJ56852.1| argininosuccinate synthase [Oenococcus oeni PSU-1]
 gi|118433093|gb|EAV39814.1| argininosuccinate synthase [Oenococcus oeni ATCC BAA-1163]
          Length = 406

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V+L                 G+ + + ++   
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVSL------------DVGQHGKQIENIQKKAL 51

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            I  +  ++ D ++ F    +     S A  E   P V   +R +    L+       A 
Sbjct: 52  KIGAIQSFIIDGKDEFAENYVSKVIKSNALYEGEYPLVSALSRPLIIEKLVQTAHDNNAV 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AIAHG 116


>gi|103486127|ref|YP_615688.1| GMP synthase [Sphingopyxis alaskensis RB2256]
 gi|98976204|gb|ABF52355.1| GMP synthase (glutamine-hydrolyzing) [Sphingopyxis alaskensis
           RB2256]
          Length = 537

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV+  +SGGVDS+V A L+    G  +  V      L++ N R+  +R          
Sbjct: 239 DQRVLCGLSGGVDSAVAAVLIHEAIGEQLTCVFVDHGLLRM-NEREQVERLFR------- 290

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDL 129
                  D  N+   V D EERF             AG   +   +  R        +  
Sbjct: 291 -------DHYNIPLVVVDAEERF------------MAGLAGITDPEQKRKFIGAEFINVF 331

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R++ GAD LA G      +          +  +           +    ++    L
Sbjct: 332 EEEARKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKL 384

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L +E+GL 
Sbjct: 385 VEPLRELFKDEVRLLGKELGLP 406


>gi|237732484|ref|ZP_04562965.1| bifunctional GMP synthase/glutamine amidotransferase [Citrobacter
           sp. 30_2]
 gi|226908023|gb|EEH93941.1| bifunctional GMP synthase/glutamine amidotransferase [Citrobacter
           sp. 30_2]
          Length = 525

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 NDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  +      P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVEGEK---RFLDALKGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|167042206|gb|ABZ06938.1| putative tRNA methyl transferase [uncultured marine crenarchaeote
           HF4000_ANIW93I24]
          Length = 268

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 51/227 (22%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M   + T+L +    KN     V+VA+SGGVDS++VA               +L  S  +
Sbjct: 1   MKTEQLTKLLNWFDGKNS----VLVALSGGVDSALVAYS----------AYAKLGKSAIS 46

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                   A +++  A+++   I + H V +Y E    + +               C  C
Sbjct: 47  VTADYKTLAQEELEYAKKISLEIGIKHIVIEYNELANESFVK---------NDNNRCFYC 97

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              +    LL V ++   D++  G        + D G  R  +                 
Sbjct: 98  RSELS-EHLLQVAKEFETDMIVDG------TNIDDLGDYRPGILALHQNG---------- 140

Query: 181 TQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
                  +R PL +    K+ VR++A+ +GL + DK  +   C   +
Sbjct: 141 -------IRSPLAETKFSKKMVREVAKNVGLSVYDKPSN--SCLASR 178


>gi|170077976|ref|YP_001734614.1| GMP synthase [Synechococcus sp. PCC 7002]
 gi|226739757|sp|B1XLR5|GUAA_SYNP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169885645|gb|ACA99358.1| GMP synthetase [Synechococcus sp. PCC 7002]
          Length = 540

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      +++D    
Sbjct: 236 DQRVLLALSGGVDSSTLAFLLHQA----IGDQLTCMFIDQGFMRKGEPERLVEIFD---- 287

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +  ++     +  +RF + +                 +  +  +  +     +++LG  
Sbjct: 288 -EQFHIPVAYINARDRFIDKLKGVTDPEEKRR------LIGHEFI--AVFEEESKRLGPF 338

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +   + +    +     L  PL  + K+
Sbjct: 339 DYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPEDLRFKLVEPLRKLFKD 397

Query: 199 SVRDLAREMGLD 210
            VR +A  +GL 
Sbjct: 398 EVRKVAASIGLP 409


>gi|261418229|ref|YP_003251911.1| argininosuccinate synthase [Geobacillus sp. Y412MC61]
 gi|319767811|ref|YP_004133312.1| argininosuccinate synthase [Geobacillus sp. Y412MC52]
 gi|261374686|gb|ACX77429.1| argininosuccinate synthase [Geobacillus sp. Y412MC61]
 gi|317112677|gb|ADU95169.1| argininosuccinate synthase [Geobacillus sp. Y412MC52]
          Length = 406

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 39/203 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKLVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D ++ F N   +    + A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--GD 194
           A  +A G                   C       DQ  F  +        ++  P+    
Sbjct: 110 AVAVAHG-------------------CTGK--GNDQVRFEVSIKALNPDLEVIAPVREWS 148

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
             +E   + A++ G+ I    DS
Sbjct: 149 WSREEEIEYAKKHGIPIPVDLDS 171


>gi|288923775|ref|ZP_06417866.1| argininosuccinate synthase [Frankia sp. EUN1f]
 gi|288344875|gb|EFC79313.1| argininosuccinate synthase [Frankia sp. EUN1f]
          Length = 400

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G +VI +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGAETGAEVIAL------------AVDVGQGGEDLEAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            T   V   V D  E F    + P   + A      P +   +R +    L+   RQ GA
Sbjct: 52  LTCGAVESIVVDAREEFAADFVAPAIRANALYMDRYPLISSLSRPIIVRHLVEAARQHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           D +A G                    +  D  R +   +          +  P+ D  M 
Sbjct: 112 DAIAHG-----------------CTGKGNDQVRFEVGVMALAPGL---RVLAPVRDSGMT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E GL I     S
Sbjct: 152 RDKAIAFAEERGLPIDVSKKS 172


>gi|240102817|ref|YP_002959126.1| GMP synthase subunit B [Thermococcus gammatolerans EJ3]
 gi|239910371|gb|ACS33262.1| GMP synthase [glutamine-hydrolyzing] pyrophosphatase subunit (C
           terminal domain) (guaA_C) [Thermococcus gammatolerans
           EJ3]
          Length = 311

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSS  A L  +  G  +  V          +          
Sbjct: 16  EIRETVGDGKAIIALSGGVDSSTAAVLAHKAIGDRLHAVF-------VNTGFMRKGEPEF 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V   R   D   ++ +  D  ERF  A           G T     +  R +     + 
Sbjct: 69  VVKTFR---DEFGLNLHYVDASERFFKA---------LKGVT---DPEEKRKIIGRVFIE 113

Query: 132 V----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           V     +++ AD L  G      +      K                  +    ++    
Sbjct: 114 VFEEIAKEINADFLIQGTIAPDWIESKGKIKSHHN--------------VGGLPERLNLK 159

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL D+ K+ VR+LA+E+GL 
Sbjct: 160 LIEPLRDLYKDEVRELAKELGLP 182


>gi|301063575|ref|ZP_07204092.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [delta proteobacterium NaphS2]
 gi|300442307|gb|EFK06555.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [delta proteobacterium NaphS2]
          Length = 518

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 42/206 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +     RV+  +SGGVDSSV A LL       +G          +     +    +D 
Sbjct: 215 LREKLGGKRVICGLSGGVDSSVTAVLLHEA----VG-------DNLSCILVDNGLLRKD- 262

Query: 74  YDARRVC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---- 125
            +AR+V     +   +  ++ D  + F +           +G T     +  R +     
Sbjct: 263 -EARKVVAVFQEYYGIDLHLVDASKHFLD---------CLSGVT---DPEEKRKIIGREF 309

Query: 126 FSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            +       +LG A  LA G  +   +      K      +           +    +  
Sbjct: 310 INIFEKKAAELGSAQYLAQG-TLYPDVIESVSFKGPSATIKSHHN-------VGGLPEVM 361

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR++  E+GL 
Sbjct: 362 NLKLVEPLRELFKDEVREVGIELGLP 387


>gi|313682703|ref|YP_004060441.1| nh(3)-dependent nad(+) synthetase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155563|gb|ADR34241.1| NH(3)-dependent NAD(+) synthetase [Sulfuricurvum kujiense DSM
           16994]
          Length = 266

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 49/204 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VVV +SGG+DS+VVA L  R  G D++ + +                +   + DA  +
Sbjct: 25  QKVVVGLSGGIDSAVVAVLAHRAFGDDLLCIKM-----------PSHYSSMSSLDDADEL 73

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLSVTRQLGA 138
           C T  +        E +    I P   +Y + +  PL   + +  ++   L  ++ + GA
Sbjct: 74  CGTFGLR------SETYS---IEPMLKAYESSDMSPLRIGNLSARLRMVTLFDISAREGA 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
                       L +G   K   ++              + T    L     P+GD+ K 
Sbjct: 125 ------------LVLGTSNKSELML-------------GYGTLHGDLASAINPIGDLYKT 159

Query: 199 SVRDLAREMGLD--IADKSDSQDI 220
            V +LAR +G+   I DK  S D+
Sbjct: 160 EVFELARYLGVPSSIIDKPPSADL 183


>gi|307711102|ref|ZP_07647524.1| argininosuccinate synthase [Streptococcus mitis SK321]
 gi|307617064|gb|EFN96242.1| argininosuccinate synthase [Streptococcus mitis SK321]
          Length = 398

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D Y+V+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YEVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|156937428|ref|YP_001435224.1| argininosuccinate synthase [Ignicoccus hospitalis KIN4/I]
 gi|172044465|sp|A8AA65|ASSY_IGNH4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|156566412|gb|ABU81817.1| argininosuccinate synthase [Ignicoccus hospitalis KIN4/I]
          Length = 396

 Score = 66.3 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 72/200 (36%), Gaps = 40/200 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV  A LK   G +VI VT+ +       + +                
Sbjct: 3   KIVLAYSGGLDTSVAVAWLKEKFGAEVITVTVDVGQKEDFKEIEERAYKAGASK------ 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD 139
                 HY+ D +E F N  I P   + A  E   P           + +  V R+ GAD
Sbjct: 57  ------HYLIDAKEEFVNKYIKPAIIANALYEEVYPLGTALARPLIGEKVIEVARKEGAD 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL---GDM 195
            +A G                           DQ  F  A         +  P+   G  
Sbjct: 111 AVAHG---------------------ATSKGNDQVRFEAAFKALAPEIKIIAPIRMWGMN 149

Query: 196 KKESVRDLAREMGLDIADKS 215
           +KE   + A++ G+ I+ +S
Sbjct: 150 RKEE-YEFAKKKGIPISAES 168


>gi|283786121|ref|YP_003365986.1| GMP synthase [glutamine-hydrolyzing] [Citrobacter rodentium ICC168]
 gi|282949575|emb|CBG89193.1| GMP synthase [glutamine-hydrolyzing] [Citrobacter rodentium ICC168]
          Length = 525

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F ++      P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---ERFLAALKGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|293611169|ref|ZP_06693467.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826420|gb|EFF84787.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124118|gb|ADY83641.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 522

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E+RF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEQRFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +    +
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPE 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|118589178|ref|ZP_01546585.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Stappia aggregata IAM 12614]
 gi|118438507|gb|EAV45141.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Stappia aggregata IAM 12614]
          Length = 523

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 75/235 (31%), Gaps = 54/235 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDSSV A L+    G  +  V      L+L  + +              
Sbjct: 225 DKKVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLLRLNEADEVVSMFR-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D  N+     D  E F            +  ET    +     +         
Sbjct: 277 -------DNYNIPLIHADESELFLGE-----LDGVSDPETKRKIIG---KLFIDVFQKHA 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++ GA+ LA G      +          +  +           +    ++    L  PL
Sbjct: 322 NEIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPL 374

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            ++ K+ VR L RE+GL            F+ +  +         G+A+   G+I
Sbjct: 375 RELFKDEVRALGRELGLPEK---------FIGRHPF------PGPGLAIRCPGEI 414


>gi|110806438|ref|YP_689958.1| GMP synthase [Shigella flexneri 5 str. 8401]
 gi|123048017|sp|Q0T212|GUAA_SHIF8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|110615986|gb|ABF04653.1| GMP synthetase (glutamine-hydrolyzing) [Shigella flexneri 5 str.
           8401]
          Length = 525

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR++  E+GL 
Sbjct: 382 DEVREIGLELGLP 394


>gi|297529241|ref|YP_003670516.1| NAD+ synthetase [Geobacillus sp. C56-T3]
 gi|297252493|gb|ADI25939.1| NAD+ synthetase [Geobacillus sp. C56-T3]
          Length = 246

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 43/193 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+KR            +               +D+ DA +V  + 
Sbjct: 25  VVGISGGIDSAVVAHLIKRA-----------FPDDSLGLIMPCKSNPKDMEDALKVVKSC 73

Query: 84  NVSHYVFDYEERFRNAV--IV---PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + H V D  E  R     +         ++     L   +    ++ + L +V    G 
Sbjct: 74  GIRHLVIDLTEAHRTLFGAVEAELKAIGEWSEERARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 LVVGTDNAAEWHTGYFTKYGDGGVDLV--------------------------PLIHFTK 167

Query: 198 ESVRDLAREMGLD 210
             VR++ R +G+ 
Sbjct: 168 GEVREMGRLLGVP 180


>gi|288549932|ref|ZP_05968665.2| GMP synthase [Enterobacter cancerogenus ATCC 35316]
 gi|288317233|gb|EFC56171.1| GMP synthase [Enterobacter cancerogenus ATCC 35316]
          Length = 539

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 241 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 286

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A    P         V          +L  
Sbjct: 287 VLDMFG-DHFGLNIVHVEGEK---RFLDALAGENDPEAKRKIIGRVFVEVFDEEALKLED 342

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 343 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 395

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 396 DEVRKIGLELGLP 408


>gi|303228954|ref|ZP_07315764.1| conserved hypothetical protein TIGR00268 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516368|gb|EFL58300.1| conserved hypothetical protein TIGR00268 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 248

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 48/196 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA+SGGVDSS +A  +K+ G      T++                  ++ DA+++ + 
Sbjct: 13  VGVALSGGVDSSYLAYAVKQSGIPCKAYTVK-----------SQFVPQFELDDAKKIAEC 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +   + D +    + V            T  P   C  C   V F+ +    ++ G  
Sbjct: 62  IGIPLEIIDIDVLEHDDV------------TSNPSDRCYYCKHHV-FTTISEQAKRDGFS 108

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +L  G    S       G +           RD                      + K  
Sbjct: 109 ILCDGTNA-SDEVDDRPGMKAIAELSVKSPLRD--------------------CGLTKSM 147

Query: 200 VRDLAREMGLDIADKS 215
           +R LA++  L   +K 
Sbjct: 148 IRQLAKQANLFTWNKP 163


>gi|307705804|ref|ZP_07642647.1| argininosuccinate synthase [Streptococcus mitis SK597]
 gi|307620636|gb|EFN99729.1| argininosuccinate synthase [Streptococcus mitis SK597]
          Length = 398

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  Y+ D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYIIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|262196644|ref|YP_003267853.1| GMP synthase, large subunit [Haliangium ochraceum DSM 14365]
 gi|262079991|gb|ACY15960.1| GMP synthase, large subunit [Haliangium ochraceum DSM 14365]
          Length = 525

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 26/192 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDSSVVAALL +  G  +  + +     R   +   +            
Sbjct: 228 DGRVICALSGGVDSSVVAALLHKAIGDRLTCIFVDNGLLRAGERETVASVFR-------- 279

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D   +  +V D E+RF + +       +             R +   + ++V  +   
Sbjct: 280 --DHFRIDLHVIDAEQRFLDRLADITDPEHK------------RKLIGREFIAVFEEESQ 325

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +    +  +  LY   D         P  + +   + +    ++    L  PL ++ K+
Sbjct: 326 HIENAAYLAQGTLY--PDVIESVSFKGPSAVIKSH-HNVGGLPERMKLKLIEPLRELFKD 382

Query: 199 SVRDLAREMGLD 210
            VR L  E+GL 
Sbjct: 383 EVRVLGAELGLP 394


>gi|116628906|ref|YP_814078.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus gasseri ATCC 33323]
 gi|238852873|ref|ZP_04643278.1| GMP synthase [Lactobacillus gasseri 202-4]
 gi|282852575|ref|ZP_06261917.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus gasseri 224-1]
 gi|122274096|sp|Q046I2|GUAA_LACGA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116094488|gb|ABJ59640.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus gasseri ATCC
           33323]
 gi|238834567|gb|EEQ26799.1| GMP synthase [Lactobacillus gasseri 202-4]
 gi|282556317|gb|EFB61937.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus gasseri 224-1]
          Length = 517

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ +   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 204 TMDDFIEMQVDEIREKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + ++RF +            G T     + 
Sbjct: 261 RKDEGDQVMQALNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 386


>gi|326430758|gb|EGD76328.1| GMP synthase [Salpingoeca sp. ATCC 50818]
          Length = 662

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 29/202 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+V +SGGVDS+V AALL +  G   VI + +     R    ++                
Sbjct: 215 VLVMVSGGVDSAVCAALLNKALGPQRVIALHIDNGFMRLDESKQVKVSL----------- 263

Query: 81  DTINVSHYVFDYEERFRN---AVIVPFASSYAAG---ETPLPC----VDCNRTVKFSDLL 130
           + + +  +V D  E F N    +     S Y      E   P     +  +  +K ++  
Sbjct: 264 ERLGLPLHVIDASEDFYNGTTTITRKDKSEYETAPLKEVTAPEEKRKIIGDTFIKVAE-- 321

Query: 131 SVTRQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              +QLG   D +           +             +    + +  +    ++Q   +
Sbjct: 322 RAMQQLGIKSDDVYLAQGTLRPDLIESASALASSSADAIKTHHNDTALVRKL-REQ-GKV 379

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D  K+ VR L  E+GL 
Sbjct: 380 VEPLKDYHKDEVRQLGLELGLA 401


>gi|326942415|gb|AEA18311.1| argininosuccinate synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 401

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLGFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|56421131|ref|YP_148449.1| NH(3)-dependent NAD+ synthetase [Geobacillus kaustophilus HTA426]
 gi|261418389|ref|YP_003252071.1| NAD+ synthetase [Geobacillus sp. Y412MC61]
 gi|319767652|ref|YP_004133153.1| NAD+ synthetase [Geobacillus sp. Y412MC52]
 gi|56380973|dbj|BAD76881.1| NH(3)-dependent NAD+ synthetase [Geobacillus kaustophilus HTA426]
 gi|261374846|gb|ACX77589.1| NAD+ synthetase [Geobacillus sp. Y412MC61]
 gi|317112518|gb|ADU95010.1| NAD+ synthetase [Geobacillus sp. Y412MC52]
          Length = 246

 Score = 66.3 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 43/193 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+KR            +               +D+ DA +V  + 
Sbjct: 25  VVGISGGIDSAVVAHLIKRA-----------FPDDSLGLIMPCKSNPKDMEDALKVVKSC 73

Query: 84  NVSHYVFDYEERFRNAV--IV---PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + H V D  E  R     +         ++     L   +    ++ + L +V    G 
Sbjct: 74  GIRHLVIDLTEAHRTLFGAVEAELKAIGEWSEERARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 LVVGTDNAAEWHTGYFTKYGDGGVDLV--------------------------PLIHFTK 167

Query: 198 ESVRDLAREMGLD 210
             VR++ R +G+ 
Sbjct: 168 GEVREMGRLLGVP 180


>gi|228941810|ref|ZP_04104357.1| Argininosuccinate synthase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974735|ref|ZP_04135301.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981330|ref|ZP_04141630.1| Argininosuccinate synthase [Bacillus thuringiensis Bt407]
 gi|228778530|gb|EEM26797.1| Argininosuccinate synthase [Bacillus thuringiensis Bt407]
 gi|228785138|gb|EEM33151.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818022|gb|EEM64100.1| Argininosuccinate synthase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 411

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLGFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|27379100|ref|NP_770629.1| GMP synthase [Bradyrhizobium japonicum USDA 110]
 gi|44887956|sp|Q89N53|GUAA_BRAJA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|27352250|dbj|BAC49254.1| GMP synthase [Bradyrhizobium japonicum USDA 110]
          Length = 551

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 78/241 (32%), Gaps = 66/241 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             +V+  +SGGVDS+V A L+    G  +  V      ++L                   
Sbjct: 253 KGKVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRL------------------- 293

Query: 74  YDARRVCD----TINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            +A +V D      N+     D  ++F      V  P       G   +   +       
Sbjct: 294 NEAEQVVDLFRHHYNIPLVHVDASKQFLGELEGVTDPETKRKTIGRLFIEVFEA------ 347

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  +  GAD LA G      +          +  +           +    ++   
Sbjct: 348 ----EAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNM 396

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGD 244
            L  PL ++ K+ VR L RE+GL         +I FV +  +         G+A+   GD
Sbjct: 397 KLVEPLRELFKDEVRKLGRELGLP--------EI-FVGRHPF------PGPGLAIRCPGD 441

Query: 245 I 245
           I
Sbjct: 442 I 442


>gi|154251625|ref|YP_001412449.1| GMP synthase [Parvibaculum lavamentivorans DS-1]
 gi|154155575|gb|ABS62792.1| GMP synthase, large subunit [Parvibaculum lavamentivorans DS-1]
          Length = 526

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 73/230 (31%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+  +SGGVDSSVVA LL       IG  LQ         R G       ++     
Sbjct: 228 KGRVICGLSGGVDSSVVAVLLHEA----IGDQLQCVFVDTGMMRAGEAEQVVSLFR---- 279

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +  N+     D  + F      V  P       G T                    R +
Sbjct: 280 -NHYNIPLVHRDASDLFLGKLEGVSDPEKKRKIIGATF-----------IDVFEEEARNI 327

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD LA G      +          +  +           +    ++    L  PL ++
Sbjct: 328 GGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLREL 380

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            K+ VR+L RE+GL            FV +  +          I + G+I
Sbjct: 381 FKDEVRELGRELGLPPD---------FVGRHPFPG----PGLAIRIPGEI 417


>gi|111224575|ref|YP_715369.1| argininosuccinate synthase [Frankia alni ACN14a]
 gi|123044092|sp|Q0RFB2|ASSY_FRAAA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|111152107|emb|CAJ63835.1| Argininosuccinate synthase (Citrulline--aspartate ligase) [Frankia
           alni ACN14a]
          Length = 400

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G +V+ +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGAETGAEVVAL------------AVDVGQGGEDLEAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            T   V   V D    F  + + P   S A      P +   +R +    L+   R+ GA
Sbjct: 52  LTCGAVESIVVDARTEFAESFVAPAIRSNALYMDRYPLISSLSRPIIVKHLVEAAREHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
           D +A G                   C       DQ  F    +       +  P+ D  M
Sbjct: 112 DAIAHG-------------------CTGK--GNDQVRFEVGVSALAPGLKVLAPVRDSGM 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++     A E GL I     S
Sbjct: 151 TRDKAIAFAEERGLPIDVSKRS 172


>gi|283832117|ref|ZP_06351858.1| GMP synthase [Citrobacter youngae ATCC 29220]
 gi|291071745|gb|EFE09854.1| GMP synthase [Citrobacter youngae ATCC 29220]
          Length = 525

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  +      P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVEGE---SRFLEALKGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|326561747|gb|EGE12082.1| GMP synthase [Moraxella catarrhalis 7169]
          Length = 519

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|311111279|ref|ZP_07712676.1| GMP synthase [Lactobacillus gasseri MV-22]
 gi|311066433|gb|EFQ46773.1| GMP synthase [Lactobacillus gasseri MV-22]
          Length = 504

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ +   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 191 TMDDFIEMQVDEIREKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 247

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + ++RF +            G T     + 
Sbjct: 248 RKDEGDQVMQALNKD-------LGVNIIRVNAQKRFLDK---------LKGVT---DPEQ 288

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 289 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 339

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 340 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 373


>gi|296536614|ref|ZP_06898691.1| GMP synthase (glutamine-hydrolyzing) [Roseomonas cervicalis ATCC
           49957]
 gi|296263060|gb|EFH09608.1| GMP synthase (glutamine-hydrolyzing) [Roseomonas cervicalis ATCC
           49957]
          Length = 520

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 62/197 (31%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+  +SGGVDSSV A L+       IG         + +         +     + V
Sbjct: 222 DGKVICGLSGGVDSSVAAVLIHEA----IG--------DQLTCIYVDHGVMRAGETEQVV 269

Query: 80  C---DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               D  N+     D  + F      V  P       G   +   +  +  K        
Sbjct: 270 ATFRDRFNIKLVHRDASDLFLGQLAGVTDPELKRKTIGRLFIEVFEEEQE-KIG------ 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD LA G      +          +  +           +    +     L  PL 
Sbjct: 323 ---GADFLAQGTLYPDVIESVSATGGPSVTIKSHHN-------VGGLPEDMRMKLVEPLR 372

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR L RE+GL 
Sbjct: 373 DLFKDEVRALGRELGLP 389


>gi|296112235|ref|YP_003626173.1| GMP synthase [Moraxella catarrhalis RH4]
 gi|295919929|gb|ADG60280.1| GMP synthase [Moraxella catarrhalis RH4]
          Length = 519

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|229551246|ref|ZP_04439971.1| argininosuccinate synthase [Lactobacillus rhamnosus LMS2-1]
 gi|258540996|ref|YP_003175495.1| argininosuccinate synthase [Lactobacillus rhamnosus Lc 705]
 gi|229315409|gb|EEN81382.1| argininosuccinate synthase [Lactobacillus rhamnosus LMS2-1]
 gi|257152672|emb|CAR91644.1| Argininosuccinate synthase [Lactobacillus rhamnosus Lc 705]
          Length = 406

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI V L +                     A +V  
Sbjct: 4   KIVLAYSGGLDTSVAIPWLMDKGYEVIAVVLNVGQPDADFDAIQQK--------ALKVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +   V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 56  ---IDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|227488144|ref|ZP_03918460.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541542|ref|ZP_03971591.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227092006|gb|EEI27318.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182698|gb|EEI63670.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 37/202 (18%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RVV+A SGG+D+SV    L K+ G +V+ VT+ L               G+D+   R+ 
Sbjct: 3   TRVVLAYSGGLDTSVAIPYLAKQTGGEVVAVTIDL------------GQGGEDLETVRQR 50

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 V   V D  + F     VP   +        P +   +R +    L+   ++ G
Sbjct: 51  ALDCGAVEAIVVDARDEFAEEYCVPTIQANGMYMGEYPLLSAISRPLIVKHLVQAAKEHG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-- 195
              ++ G                    +  D  R +  F     + +   +  P  D   
Sbjct: 111 GTHVSHG-----------------CTGKGNDQVRFEVSFANLAPELE---VIAPARDYAW 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++     A E+ L I     S
Sbjct: 151 TRDKAIAFAEEIDLPIEQSKKS 172


>gi|108803920|ref|YP_643857.1| hypothetical protein Rxyl_1079 [Rubrobacter xylanophilus DSM 9941]
 gi|108765163|gb|ABG04045.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941]
          Length = 279

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 84/245 (34%), Gaps = 59/245 (24%)

Query: 24  VVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VA SGGVDSS    V    L R+   V+ VT                    ++  AR +
Sbjct: 22  LVAFSGGVDSSLALAVAVRALSRE--RVLAVT-----------SCNETYLPSELEKAREL 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGA 138
             ++ V H V +  E                   P   C  C  T+ +++L  + R+ G 
Sbjct: 69  AASLGVRHEVINTRE----------LDDPNYASNPSNRCYFCKSTL-YAELGRMARERGY 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
             +  G          D+G  R       +L                  +  PL +  + 
Sbjct: 118 GCVVDG------ANADDEGDWRPGRKAARELG-----------------VLSPLSEAGVG 154

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNG--QIL 253
           KE VR LAR +GL   DK      C   +  Y   +     + +A   + +   G  Q+ 
Sbjct: 155 KEEVRRLARHLGLSTWDKPAL--ACLSSRFPYGQRITPEKLSQVAQAEEFLRSRGFRQVR 212

Query: 254 GRHNG 258
            RH+G
Sbjct: 213 VRHHG 217


>gi|326578065|gb|EGE27925.1| GMP synthase [Moraxella catarrhalis O35E]
          Length = 519

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|154244402|ref|YP_001415360.1| GMP synthase [Xanthobacter autotrophicus Py2]
 gi|154158487|gb|ABS65703.1| GMP synthase, large subunit [Xanthobacter autotrophicus Py2]
          Length = 524

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           RV+  +SGGVDSSV A L+    G  +  V      ++   + +                
Sbjct: 228 RVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRQAEADEVVSLFRG--------- 278

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                   N+     D  E F               E P         +      +  R+
Sbjct: 279 ------HYNIPLVHVDASELF--------LKELEGVEDPEAKRKTIGRLFIDVFDAEARK 324

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GAD LA G      +          +  +           +    ++    L  PL D
Sbjct: 325 VGGADFLAQGTLYPDVIESVSFAGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRD 377

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L RE+GL 
Sbjct: 378 LFKDEVRALGRELGLP 393


>gi|133919930|emb|CAM12490.1| hypothetical protein [uncultured bacterium]
          Length = 521

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L+   +                A
Sbjct: 226 VILGLSGGVDSSVTAALIHRAIGDQLTCVFVDNGLLRLHEREQV---------------A 270

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
           +   D + +   V D  +RF +A          AG T     +  R +     + V    
Sbjct: 271 QTFRDNMGMKLIVVDASDRFMDA---------LAGVT---DPEAKRKIIGRLFVEVFQEE 318

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L  A  LA G      +       ++    +           +          L  P
Sbjct: 319 AEKLQNAKWLAQGTIYPDVIESNGAKTKKAQTIKSHHN-------VGGLPDTLHLKLLEP 371

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +GL 
Sbjct: 372 LRELFKDEVRELGIALGLP 390


>gi|15669538|ref|NP_248349.1| ExsB [Methanocaldococcus jannaschii DSM 2661]
 gi|1591989|gb|AAB99356.1| ExsB [Methanocaldococcus jannaschii DSM 2661]
          Length = 235

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+VV  + K  GY+V  +T             G   A +++  A+++C
Sbjct: 4   MKAITVLSGGLDSTVVTLIAKDLGYEVTAITF----------NYGQRAAKREINSAKKIC 53

Query: 81  DTINVSHYVFD--YEERF-------RNAV---IVPFASSYAAGETPLPCVDCNRTVK-FS 127
           + + + H V D  + ++F          +    +    S  A ET        R V  F 
Sbjct: 54  EILGIEHIVVDLPFVKQFGKSSLITEKEIPTLKMEELDSEKAYETMKAVWVPARNVIMFG 113

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   L A+ +  G   +       D     +             F        L  
Sbjct: 114 IASGFAEALDAEKIFIG-INKEEGVTFPDNTIEFV-----------EAFNKVLEYGTLNK 161

Query: 188 LRF--PLGDMKKESVRDLAREM 207
           ++   PL D  KE +  L  E+
Sbjct: 162 VKIEAPLYDKTKEEIVKLGAEL 183


>gi|86150584|ref|ZP_01068807.1| GMP synthase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596187|ref|ZP_01099424.1| GMP synthase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562860|ref|YP_002344639.1| GMP synthase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|13627146|sp|Q9PN49|GUAA_CAMJE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|85838935|gb|EAQ56201.1| GMP synthase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191028|gb|EAQ95000.1| GMP synthase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360566|emb|CAL35363.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926473|gb|ADC28825.1| GMP synthase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927127|gb|EFV06478.1| GMP synthase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 511

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     +I V            R G     + ++ 
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---IIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +T+ +     D  E F + ++                +  N  +         ++
Sbjct: 267 -----NTLGIDLISIDASEIFLSRLVNVTDPEQKRK------IIGNTFI--EVFEEEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRALGLELGLS 380


>gi|229916099|ref|YP_002884745.1| argininosuccinate synthase [Exiguobacterium sp. AT1b]
 gi|229467528|gb|ACQ69300.1| argininosuccinate synthase [Exiguobacterium sp. AT1b]
          Length = 403

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    L   GYDVI V L +   +   K +           A +V
Sbjct: 2   KQKLVLAYSGGLDTSVAIKWLDEQGYDVIAVCLNVGEGKDLEKIQ---------QKAMKV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
               ++   V D  + F N        ++   E   P V   +R +    L+ V +  GA
Sbjct: 53  GAKKSI---VIDAVDEFVNEFARYSMQAHTLYEGIYPLVSALSRPLISKKLVEVAQAEGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 VAVAHG 115


>gi|85715675|ref|ZP_01046655.1| GMP synthase [Nitrobacter sp. Nb-311A]
 gi|85697614|gb|EAQ35491.1| GMP synthase [Nitrobacter sp. Nb-311A]
          Length = 549

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 78/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDSSV A L+    G  +  V     +     K +G        +    
Sbjct: 251 KGRVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGMLRKDEGKTVVDLFRH---- 303

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
                N+     D  ++F +           AG T     +  R       + V     +
Sbjct: 304 ---HYNIPLVHVDASKQFLDE---------LAGVT---DPESKRKTIGRLFIDVFEAEAK 348

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GA+ LA G      +          +  +           +     +    L  PL 
Sbjct: 349 TIGGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMNMKLVEPLR 401

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL         DI FV +  +         G+A+   G+I
Sbjct: 402 ELFKDEVRALGRELGLP--------DI-FVGRHPF------PGPGLAIRCPGEI 440


>gi|158425329|ref|YP_001526621.1| GMP synthase [Azorhizobium caulinodans ORS 571]
 gi|158332218|dbj|BAF89703.1| putative GMP synthase [Azorhizobium caulinodans ORS 571]
          Length = 515

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV+  +SGGVDS+V A L+    G  +  V      ++L  + +              
Sbjct: 217 DKRVLCGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRLGEAEQVVSLFR-------- 268

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  +T N+     D  E F                  +   +  R       + V 
Sbjct: 269 -------NTYNIPLVHVDASELF------------LKELDGVSDPEKKRKTIGKLFIDVF 309

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +++ GAD LA G      +          +  +           +    ++    L
Sbjct: 310 EAEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKL 362

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL      +S    FV +  +         G+A+   G+I
Sbjct: 363 VEPLRELFKDEVRALGRELGLP-----ES----FVGRHPF------PGPGLAIRCPGEI 406


>gi|224418532|ref|ZP_03656538.1| NH(3)-dependent NAD+ synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|253826914|ref|ZP_04869799.1| NH(3)-dependent NAD(+) synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313142058|ref|ZP_07804251.1| NH(3)-dependent NAD synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|253510320|gb|EES88979.1| NH(3)-dependent NAD(+) synthetase [Helicobacter canadensis MIT
           98-5491]
 gi|313131089|gb|EFR48706.1| NH(3)-dependent NAD synthetase [Helicobacter canadensis MIT
           98-5491]
          Length = 252

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 70/190 (36%), Gaps = 43/190 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV  +SGG+DS+VVA L K+      G+    +++      + S      + DA  +C T
Sbjct: 27  VVFGLSGGIDSAVVAVLCKQA----FGL---NHHAILMPSLQSS---KSSLEDALELCKT 76

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADV 140
            ++SH +   E+  +      F  +   G    P    N    ++   L           
Sbjct: 77  FDISHSILPLEKPQKG-----FLDT-LEGLENNPARMGNLCARIRMIYLYDYA------- 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                + ++ L +G   K   ++              + T    L     P+G++ K  +
Sbjct: 124 -----FAKNALVIGTSNKSEILL-------------GYGTIFGDLACAINPIGNLYKTEI 165

Query: 201 RDLAREMGLD 210
            ++A+ + L 
Sbjct: 166 FEIAKLLNLP 175


>gi|110825739|sp|Q58742|QUEC_METJA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
          Length = 232

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+VV  + K  GY+V  +T             G   A +++  A+++C
Sbjct: 1   MKAITVLSGGLDSTVVTLIAKDLGYEVTAITF----------NYGQRAAKREINSAKKIC 50

Query: 81  DTINVSHYVFD--YEERF-------RNAV---IVPFASSYAAGETPLPCVDCNRTVK-FS 127
           + + + H V D  + ++F          +    +    S  A ET        R V  F 
Sbjct: 51  EILGIEHIVVDLPFVKQFGKSSLITEKEIPTLKMEELDSEKAYETMKAVWVPARNVIMFG 110

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   L A+ +  G   +       D     +             F        L  
Sbjct: 111 IASGFAEALDAEKIFIG-INKEEGVTFPDNTIEFV-----------EAFNKVLEYGTLNK 158

Query: 188 LRF--PLGDMKKESVRDLAREM 207
           ++   PL D  KE +  L  E+
Sbjct: 159 VKIEAPLYDKTKEEIVKLGAEL 180


>gi|326569032|gb|EGE19101.1| GMP synthase [Moraxella catarrhalis BC1]
 gi|326575516|gb|EGE25441.1| GMP synthase [Moraxella catarrhalis 101P30B1]
          Length = 519

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|326562312|gb|EGE12638.1| GMP synthase [Moraxella catarrhalis 103P14B1]
          Length = 519

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|324328524|gb|ADY23784.1| argininosuccinate synthase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|228917274|ref|ZP_04080831.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935940|ref|ZP_04098750.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823708|gb|EEM69530.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842475|gb|EEM87566.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|228987879|ref|ZP_04147988.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771927|gb|EEM20384.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|229032281|ref|ZP_04188254.1| Argininosuccinate synthase [Bacillus cereus AH1271]
 gi|228729061|gb|EEL80064.1| Argininosuccinate synthase [Bacillus cereus AH1271]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|229093727|ref|ZP_04224826.1| Argininosuccinate synthase [Bacillus cereus Rock3-42]
 gi|228689612|gb|EEL43420.1| Argininosuccinate synthase [Bacillus cereus Rock3-42]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|229076132|ref|ZP_04209100.1| Argininosuccinate synthase [Bacillus cereus Rock4-18]
 gi|229105258|ref|ZP_04235907.1| Argininosuccinate synthase [Bacillus cereus Rock3-28]
 gi|228678184|gb|EEL32412.1| Argininosuccinate synthase [Bacillus cereus Rock3-28]
 gi|228706995|gb|EEL59200.1| Argininosuccinate synthase [Bacillus cereus Rock4-18]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|228929683|ref|ZP_04092701.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229124200|ref|ZP_04253392.1| Argininosuccinate synthase [Bacillus cereus 95/8201]
 gi|228659502|gb|EEL15150.1| Argininosuccinate synthase [Bacillus cereus 95/8201]
 gi|228830070|gb|EEM75689.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|229158237|ref|ZP_04286304.1| Argininosuccinate synthase [Bacillus cereus ATCC 4342]
 gi|228625195|gb|EEK81955.1| Argininosuccinate synthase [Bacillus cereus ATCC 4342]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|229163623|ref|ZP_04291572.1| Argininosuccinate synthase [Bacillus cereus R309803]
 gi|228619873|gb|EEK76750.1| Argininosuccinate synthase [Bacillus cereus R309803]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|229175341|ref|ZP_04302856.1| Argininosuccinate synthase [Bacillus cereus MM3]
 gi|228608173|gb|EEK65480.1| Argininosuccinate synthase [Bacillus cereus MM3]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|228954898|ref|ZP_04116918.1| Argininosuccinate synthase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960898|ref|ZP_04122531.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048336|ref|ZP_04193904.1| Argininosuccinate synthase [Bacillus cereus AH676]
 gi|229072132|ref|ZP_04205341.1| Argininosuccinate synthase [Bacillus cereus F65185]
 gi|229129913|ref|ZP_04258879.1| Argininosuccinate synthase [Bacillus cereus BDRD-Cer4]
 gi|229147190|ref|ZP_04275548.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST24]
 gi|229192833|ref|ZP_04319791.1| Argininosuccinate synthase [Bacillus cereus ATCC 10876]
 gi|228590672|gb|EEK48533.1| Argininosuccinate synthase [Bacillus cereus ATCC 10876]
 gi|228636300|gb|EEK92772.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST24]
 gi|228653604|gb|EEL09476.1| Argininosuccinate synthase [Bacillus cereus BDRD-Cer4]
 gi|228711066|gb|EEL63032.1| Argininosuccinate synthase [Bacillus cereus F65185]
 gi|228723061|gb|EEL74438.1| Argininosuccinate synthase [Bacillus cereus AH676]
 gi|228798794|gb|EEM45774.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804887|gb|EEM51486.1| Argininosuccinate synthase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|222098103|ref|YP_002532160.1| argininosuccinate synthase [Bacillus cereus Q1]
 gi|301056138|ref|YP_003794349.1| argininosuccinate synthase [Bacillus anthracis CI]
 gi|254807507|sp|B9J0E1|ASSY_BACCQ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|221242161|gb|ACM14871.1| argininosuccinate synthase [Bacillus cereus Q1]
 gi|300378307|gb|ADK07211.1| argininosuccinate synthase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|196032963|ref|ZP_03100376.1| argininosuccinate synthase [Bacillus cereus W]
 gi|196040846|ref|ZP_03108144.1| argininosuccinate synthase [Bacillus cereus NVH0597-99]
 gi|206977157|ref|ZP_03238056.1| argininosuccinate synthase [Bacillus cereus H3081.97]
 gi|218905860|ref|YP_002453694.1| argininosuccinate synthase [Bacillus cereus AH820]
 gi|228948359|ref|ZP_04110642.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|226729218|sp|B7JS06|ASSY_BACC0 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|195994392|gb|EDX58347.1| argininosuccinate synthase [Bacillus cereus W]
 gi|196028300|gb|EDX66909.1| argininosuccinate synthase [Bacillus cereus NVH0597-99]
 gi|206744642|gb|EDZ56050.1| argininosuccinate synthase [Bacillus cereus H3081.97]
 gi|218539076|gb|ACK91474.1| argininosuccinate synthase [Bacillus cereus AH820]
 gi|228811346|gb|EEM57684.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|217962117|ref|YP_002340687.1| argininosuccinate synthase [Bacillus cereus AH187]
 gi|226729215|sp|B7HRS7|ASSY_BACC7 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|217066572|gb|ACJ80822.1| argininosuccinate synthase [Bacillus cereus AH187]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|118479773|ref|YP_896924.1| argininosuccinate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|229186890|ref|ZP_04314045.1| Argininosuccinate synthase [Bacillus cereus BGSC 6E1]
 gi|118418998|gb|ABK87417.1| argininosuccinate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|228596627|gb|EEK54292.1| Argininosuccinate synthase [Bacillus cereus BGSC 6E1]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|52140876|ref|YP_085953.1| argininosuccinate synthase [Bacillus cereus E33L]
 gi|196043913|ref|ZP_03111150.1| argininosuccinate synthase [Bacillus cereus 03BB108]
 gi|225866612|ref|YP_002751990.1| argininosuccinate synthase [Bacillus cereus 03BB102]
 gi|68566239|sp|Q633G4|ASSY_BACCZ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|172044116|sp|A0RJM4|ASSY_BACAH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807506|sp|C1EUX9|ASSY_BACC3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|51974345|gb|AAU15895.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus
           cereus E33L]
 gi|196025249|gb|EDX63919.1| argininosuccinate synthase [Bacillus cereus 03BB108]
 gi|225789329|gb|ACO29546.1| argininosuccinate synthase [Bacillus cereus 03BB102]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|42783811|ref|NP_981058.1| argininosuccinate synthase [Bacillus cereus ATCC 10987]
 gi|47605388|sp|P61520|ASSY_BACC1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|42739741|gb|AAS43666.1| argininosuccinate synthase [Bacillus cereus ATCC 10987]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|30264704|ref|NP_847081.1| argininosuccinate synthase [Bacillus anthracis str. Ames]
 gi|47530173|ref|YP_021522.1| argininosuccinate synthase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187522|ref|YP_030775.1| argininosuccinate synthase [Bacillus anthracis str. Sterne]
 gi|165869602|ref|ZP_02214260.1| argininosuccinate synthase [Bacillus anthracis str. A0488]
 gi|167634048|ref|ZP_02392371.1| argininosuccinate synthase [Bacillus anthracis str. A0442]
 gi|167638113|ref|ZP_02396391.1| argininosuccinate synthase [Bacillus anthracis str. A0193]
 gi|170685699|ref|ZP_02876922.1| argininosuccinate synthase [Bacillus anthracis str. A0465]
 gi|170705390|ref|ZP_02895854.1| argininosuccinate synthase [Bacillus anthracis str. A0389]
 gi|177651161|ref|ZP_02933992.1| argininosuccinate synthase [Bacillus anthracis str. A0174]
 gi|190569076|ref|ZP_03021976.1| argininosuccinate synthase [Bacillus anthracis Tsiankovskii-I]
 gi|227817420|ref|YP_002817429.1| argininosuccinate synthase [Bacillus anthracis str. CDC 684]
 gi|229601082|ref|YP_002868913.1| argininosuccinate synthase [Bacillus anthracis str. A0248]
 gi|254687441|ref|ZP_05151297.1| argininosuccinate synthase [Bacillus anthracis str. CNEVA-9066]
 gi|254725004|ref|ZP_05186787.1| argininosuccinate synthase [Bacillus anthracis str. A1055]
 gi|254736741|ref|ZP_05194447.1| argininosuccinate synthase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741778|ref|ZP_05199465.1| argininosuccinate synthase [Bacillus anthracis str. Kruger B]
 gi|254754624|ref|ZP_05206659.1| argininosuccinate synthase [Bacillus anthracis str. Vollum]
 gi|254757456|ref|ZP_05209483.1| argininosuccinate synthase [Bacillus anthracis str. Australia 94]
 gi|33300934|sp|Q81KV7|ASSY_BACAN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807504|sp|C3PB97|ASSY_BACAA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807505|sp|C3L9T6|ASSY_BACAC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|30259379|gb|AAP28567.1| argininosuccinate synthase [Bacillus anthracis str. Ames]
 gi|47505321|gb|AAT33997.1| argininosuccinate synthase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181449|gb|AAT56825.1| argininosuccinate synthase [Bacillus anthracis str. Sterne]
 gi|164714431|gb|EDR19950.1| argininosuccinate synthase [Bacillus anthracis str. A0488]
 gi|167513930|gb|EDR89298.1| argininosuccinate synthase [Bacillus anthracis str. A0193]
 gi|167530849|gb|EDR93551.1| argininosuccinate synthase [Bacillus anthracis str. A0442]
 gi|170129515|gb|EDS98378.1| argininosuccinate synthase [Bacillus anthracis str. A0389]
 gi|170670163|gb|EDT20903.1| argininosuccinate synthase [Bacillus anthracis str. A0465]
 gi|172082987|gb|EDT68049.1| argininosuccinate synthase [Bacillus anthracis str. A0174]
 gi|190559858|gb|EDV13843.1| argininosuccinate synthase [Bacillus anthracis Tsiankovskii-I]
 gi|227002602|gb|ACP12345.1| argininosuccinate synthase [Bacillus anthracis str. CDC 684]
 gi|229265490|gb|ACQ47127.1| argininosuccinate synthase [Bacillus anthracis str. A0248]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|30022705|ref|NP_834336.1| argininosuccinate synthase [Bacillus cereus ATCC 14579]
 gi|206969614|ref|ZP_03230568.1| argininosuccinate synthase [Bacillus cereus AH1134]
 gi|218234148|ref|YP_002369424.1| argininosuccinate synthase [Bacillus cereus B4264]
 gi|229112095|ref|ZP_04241638.1| Argininosuccinate synthase [Bacillus cereus Rock1-15]
 gi|229152824|ref|ZP_04281007.1| Argininosuccinate synthase [Bacillus cereus m1550]
 gi|296505099|ref|YP_003666799.1| argininosuccinate synthase [Bacillus thuringiensis BMB171]
 gi|33300931|sp|Q817C6|ASSY_BACCR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226729216|sp|B7H6Y5|ASSY_BACC4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|29898264|gb|AAP11537.1| Argininosuccinate synthase [Bacillus cereus ATCC 14579]
 gi|206735302|gb|EDZ52470.1| argininosuccinate synthase [Bacillus cereus AH1134]
 gi|218162105|gb|ACK62097.1| argininosuccinate synthase [Bacillus cereus B4264]
 gi|228630644|gb|EEK87290.1| Argininosuccinate synthase [Bacillus cereus m1550]
 gi|228671418|gb|EEL26719.1| Argininosuccinate synthase [Bacillus cereus Rock1-15]
 gi|296326151|gb|ADH09079.1| argininosuccinate synthase [Bacillus thuringiensis BMB171]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|47565044|ref|ZP_00236087.1| argininosuccinate synthase [Bacillus cereus G9241]
 gi|47557830|gb|EAL16155.1| argininosuccinate synthase [Bacillus cereus G9241]
          Length = 401

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|254171778|ref|ZP_04878454.1| GMP synthase, C-terminal domain [Thermococcus sp. AM4]
 gi|214033674|gb|EEB74500.1| GMP synthase, C-terminal domain [Thermococcus sp. AM4]
          Length = 307

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSS  A L  +  G  +  V          +          
Sbjct: 12  EIRETVGDGKAIIALSGGVDSSTAAILAHKAIGDRLHAVF-------VNTGFMRKGEPEF 64

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V   R   D   ++ +  D  ERF  A           G T     +  R +     + 
Sbjct: 65  VVKTFR---DEFGLNLHYVDASERFFKA---------LKGVT---DPEEKRKIIGRVFIE 109

Query: 132 V----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           V     +++ AD L  G      +      K                  +    ++    
Sbjct: 110 VFEEIAKEINADFLIQGTIAPDWIESRGKIKSHHN--------------VGGLPERLNLK 155

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL D+ K+ VR+LA+E+GL 
Sbjct: 156 LIEPLRDLYKDEVRELAKELGLP 178


>gi|303230379|ref|ZP_07317140.1| NAD+ synthase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514918|gb|EFL56899.1| NAD+ synthase [Veillonella atypica ACS-049-V-Sch6]
          Length = 256

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 86/251 (34%), Gaps = 53/251 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG DSSVVAAL K   G + V+GV +                   D+ DA+ V  
Sbjct: 30  VVGISGGKDSSVVAALCKEALGAERVVGVLMPN-------------DVQSDIDDAKEVVA 76

Query: 82  TINVSHYVFDYEERFR---NAVIVPFASSYAAGETP-LPCVDCN--RTVKFSDLLSVTRQ 135
            + + + + +    +R    A++     S   G T      + N    ++ + L +V + 
Sbjct: 77  HLGIPYMIVNIGNAYRALTKAIVQGEGFSNVTGRTALARDAEINTPPRLRMATLYAVGQN 136

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L       G  + +     +D        +  D   D S                PL ++
Sbjct: 137 L-----LYGARVANTCNGSEDYVGYS--TKFGDAAGDFS----------------PLANL 173

Query: 196 KKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-- 251
             E VR + R + +   + DK+ S  +              +       G+I  +  +  
Sbjct: 174 VVEEVRQIGRLLDIPRHLVDKTPSDGLSGQSDEDKLGFTYAVLDRYIRTGEIEDIQTKER 233

Query: 252 -----ILGRHN 257
                 + RH 
Sbjct: 234 IDYLQRINRHK 244


>gi|303231480|ref|ZP_07318210.1| conserved hypothetical protein TIGR00268 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513823|gb|EFL55835.1| conserved hypothetical protein TIGR00268 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 248

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 48/196 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA+SGGVDSS +A  +K+ G      T++                  ++ DA+++ + 
Sbjct: 13  VGVALSGGVDSSYLAYAVKQSGIPCKAYTVK-----------SQFVPQFELDDAKKIAEC 61

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +   + D +    + V            T  P   C  C   V F+ +    ++ G  
Sbjct: 62  IGIPLEIIDIDVLEHDDV------------TSNPSDRCYYCKHYV-FTTISEQAKRDGFS 108

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +L  G    S       G +           RD S                    + K  
Sbjct: 109 ILCDGTNA-SDEVDDRPGMKAIAELSVKSPLRDCS--------------------LTKSM 147

Query: 200 VRDLAREMGLDIADKS 215
           +R LA++  L   +K 
Sbjct: 148 IRQLAKQANLFTWNKP 163


>gi|270159635|ref|ZP_06188291.1| GMP synthase [Legionella longbeachae D-4968]
 gi|289165579|ref|YP_003455717.1| GMP synthetase (glutamine-hydrolyzing) [Legionella longbeachae
           NSW150]
 gi|269987974|gb|EEZ94229.1| GMP synthase [Legionella longbeachae D-4968]
 gi|288858752|emb|CBJ12657.1| putative GMP synthetase (glutamine-hydrolyzing) [Legionella
           longbeachae NSW150]
          Length = 525

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 44/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +I V      L+++ + +     G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHKAIGKQLICVFVDTGLLRIHEADEVMNMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSV 132
                  + +       E++F NA+             G T +                 
Sbjct: 278 -----KNMGIQVIAVKAEDKFLNALKGVTCPEEKRKIIGHTFIEV-----------FDEE 321

Query: 133 TRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++ G   LA G  Y         +     ++ +           +    +     L  
Sbjct: 322 AHKIPGVSWLAQGTIYPDVIESAATNTNGASMVIKSHHN-------VGGLPETLNLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+ ++ K+ VR++  E+GL 
Sbjct: 375 PIRELFKDEVRNIGLELGLP 394


>gi|228967727|ref|ZP_04128744.1| Argininosuccinate synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228791949|gb|EEM39534.1| Argininosuccinate synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 411

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YDVI + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMVDVQEGFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|239827863|ref|YP_002950487.1| NAD+ synthetase [Geobacillus sp. WCH70]
 gi|239808156|gb|ACS25221.1| NAD+ synthetase [Geobacillus sp. WCH70]
          Length = 246

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 43/195 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVA L+KR            +               +D+ DA +V ++ 
Sbjct: 25  IVGISGGIDSAVVAHLIKRA-----------FPDNSLGLIMPCKSNPKDMEDALKVVESC 73

Query: 84  NVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQLGA 138
            + H + D  E        V           E      D N    ++ + L +V    G 
Sbjct: 74  GIKHLIIDLTETHNLLFGEVEKQLKEKGEWNEETARLGDANTRARLRMTTLYAVANNYGY 133

Query: 139 DVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ T +       Y    G     +                           PL    K
Sbjct: 134 MVVGTDNAAEWYTGYFTKYGDGGVDLV--------------------------PLVHFTK 167

Query: 198 ESVRDLAREMGLDIA 212
             VR++AR +G+   
Sbjct: 168 GEVREMARILGVPNE 182


>gi|296273590|ref|YP_003656221.1| GMP synthase large subunit [Arcobacter nitrofigilis DSM 7299]
 gi|296097764|gb|ADG93714.1| GMP synthase, large subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 511

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSVVA LL    G  +I V +                   +      
Sbjct: 215 DKKVLCGVSGGVDSSVVATLLAEAIGDQLIPVFVDN-----------GLLRANEREQVEA 263

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +     V     D  E+F +    V  P       GET          +K        ++
Sbjct: 264 MFKARGVPLITVDATEQFLSKLAGVTDPETKRKIIGET---------FIKV--FDEEAKK 312

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G + LA G  + + +      K      +           +         DL  PL +
Sbjct: 313 HDGIEFLAQG-TLYTDVIESVSVKGPSKTIKSHHN-------VGGLPDWMTFDLIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+G+ 
Sbjct: 365 IFKDEVRLLGLELGIP 380


>gi|282164942|ref|YP_003357327.1| hypothetical protein MCP_2272 [Methanocella paludicola SANAE]
 gi|282157256|dbj|BAI62344.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 272

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 73/212 (34%), Gaps = 42/212 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDSS    LLK    D +G          A+       + +D   A  +   
Sbjct: 23  VLVAFSGGVDSS---FLLKCA-VDTLGT-----QKVAAATAVSEILSPEDFDLAESIAKD 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V H +    E      I           TP  C  C +  +FS L+    +L    +A
Sbjct: 74  LGVRHVIVTSSEMENAEFI---------ANTPERCYVCKKG-RFSKLIEEKEKLSLAYIA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          DD    R   R M              + QL           K  +R+
Sbjct: 124 DG-------SNRDDEADYRPGERAMKEL----GIRSPLREAQL----------YKSEIRE 162

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           L+REMGL    +  SQ  C   +  Y + + +
Sbjct: 163 LSREMGLPTWGRP-SQ-ACIATRIPYGEAITK 192


>gi|116496233|ref|YP_807967.1| argininosuccinate synthase [Lactobacillus casei ATCC 334]
 gi|239630684|ref|ZP_04673715.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067835|ref|YP_003789858.1| argininosuccinate synthase [Lactobacillus casei str. Zhang]
 gi|122262369|sp|Q033U7|ASSY_LACC3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116106383|gb|ABJ71525.1| argininosuccinate synthase [Lactobacillus casei ATCC 334]
 gi|239526967|gb|EEQ65968.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440242|gb|ADK20008.1| Argininosuccinate synthase [Lactobacillus casei str. Zhang]
          Length = 406

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V L +                    D+     
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNVGQPNADFDAIQQKALNVGALDS----- 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 59  ------IVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|294501526|ref|YP_003565226.1| argininosuccinate synthase [Bacillus megaterium QM B1551]
 gi|295706874|ref|YP_003599949.1| argininosuccinate synthase [Bacillus megaterium DSM 319]
 gi|294351463|gb|ADE71792.1| argininosuccinate synthase [Bacillus megaterium QM B1551]
 gi|294804533|gb|ADF41599.1| argininosuccinate synthase [Bacillus megaterium DSM 319]
          Length = 402

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + +VV+A SGG+D+SV    L+  GYDV+   L                 G+D+   + 
Sbjct: 2   SNPKVVLAYSGGLDTSVAIKWLQEKGYDVVACCL-------------DVGEGKDLKFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              T+  VS YV D +E + N   +    ++   E   P V   +R +    L+ V  Q 
Sbjct: 49  KALTVGAVSSYVIDAKEEYANTFALAALQAHTLYEGKYPLVSALSRPLIAKKLVEVAEQE 108

Query: 137 GADVLATG 144
            A  +A G
Sbjct: 109 NAVAVAHG 116


>gi|191639758|ref|YP_001988924.1| argininosuccinate synthase [Lactobacillus casei BL23]
 gi|190714060|emb|CAQ68066.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Lactobacillus casei BL23]
 gi|327383871|gb|AEA55347.1| Argininosuccinate synthase [Lactobacillus casei LC2W]
 gi|327387052|gb|AEA58526.1| Argininosuccinate synthase [Lactobacillus casei BD-II]
          Length = 406

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V L +                    D+     
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNVGQPNADFDAIQQKALNVGALDS----- 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 59  ------IVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|149194281|ref|ZP_01871378.1| NAD(+) synthase [Caminibacter mediatlanticus TB-2]
 gi|149135456|gb|EDM23935.1| NAD(+) synthase [Caminibacter mediatlanticus TB-2]
          Length = 272

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 45/187 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+VVA L K+           L  + KA        +   + DA+ +C   
Sbjct: 37  ICGLSGGIDSAVVAVLAKKA----------LGKNFKAFMLPSQFSSSSSIEDAKELCKKF 86

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++ + +           I P  ++Y   E  +   + +  ++ + L   + +L A     
Sbjct: 87  DIEYEIIS---------IEPLLNAYKI-EDKVRLGNFSARMRMAILYDKSAELNA----- 131

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
                  L +G   K   ++              + T    L     P+GD+ K  + + 
Sbjct: 132 -------LVIGTSNKSELML-------------GYGTLYGDLASALNPIGDLYKSEIFEF 171

Query: 204 AREMGLD 210
           A+ +G+ 
Sbjct: 172 AKYLGVP 178


>gi|298710308|emb|CBJ31929.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 347

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 83/224 (37%), Gaps = 41/224 (18%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L L  +  D + +VA SGGVDSS+VAAL          V      S +A     S     
Sbjct: 13  LSLGTSAADGKNIVAFSGGVDSSLVAAL----------VHHAFPRSSQACVGVSSALPAA 62

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +  AR V + I +        E             Y A E    C  C   + +S L +
Sbjct: 63  QLDLARSVANRIGIPLTEISTTE--------GSDPDYIANE-GQSCFHCKTHL-YSALEA 112

Query: 132 VTRQLGAD-------VLATGHYIRSRLYVGD--------DGKRRRIMCRP--MDLERDQS 174
           V  Q G +        +  G    S L  G         +G RR ++      D +RD +
Sbjct: 113 VAVQAGVESRRSSAAAVGDGEPSTSALEGGGADGAGGIVEGGRRVVLFNGTNKDDKRDTT 172

Query: 175 YF-LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDS 217
              L A    Q+     P+  + K  VR +ARE+GL   + + S
Sbjct: 173 RVGLKAAADFQVA---SPIDMLTKAEVRAVARELGLPNWNHAAS 213


>gi|57238122|ref|YP_179372.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni RM1221]
 gi|81353439|sp|Q5HTL3|GUAA_CAMJR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57166926|gb|AAW35705.1| GMP synthase [Campylobacter jejuni RM1221]
 gi|315058682|gb|ADT73011.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 511

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V +     R   K +           
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVFVDNGLLRSREKEQVEFMFK----- 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +T+ +     D  E F + +                 +  N  +         ++
Sbjct: 267 -----NTLGIDLISIDASEIFLSRLANVTDPEQKRK------IIGNTFI--EVFEEEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRALGLELGLS 380


>gi|311278572|ref|YP_003940803.1| GMP synthase, large subunit [Enterobacter cloacae SCF1]
 gi|308747767|gb|ADO47519.1| GMP synthase, large subunit [Enterobacter cloacae SCF1]
          Length = 525

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVEGEK---RFLDALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|307594719|ref|YP_003901036.1| exsB protein [Vulcanisaeta distributa DSM 14429]
 gi|307549920|gb|ADN49985.1| exsB protein [Vulcanisaeta distributa DSM 14429]
          Length = 496

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 32/201 (15%)

Query: 23  VVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+V  SGG+DS+  A  LLK  GYDV  +    Y  R  ++   +          RR+ +
Sbjct: 255 VLVIASGGLDSTTAATYLLK-QGYDVALLHF-NYGHRAETQEDRA---------IRRIAE 303

Query: 82  TINVSHYVFDYEERFRNAV----------IVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            + V     +    F   V          I          E     V     V  +   +
Sbjct: 304 FLGVPL--LEVSMDFFKVVRHSPLLGDGEINRVDEGREGAEFAHEWVPARNFVFIALATA 361

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +    G D +ATG  +       D+      +   +          +A    +  +L  P
Sbjct: 362 IAEAYGYDYIATGINLEEAGAYPDNEMEFIRLLNKV--------MPYAVGPNKHVELLMP 413

Query: 192 LGDMKKESVRDLAREMGLDIA 212
           +G + K  +  L  E+G  + 
Sbjct: 414 VGHLVKHEIVKLGLEVGAPLH 434


>gi|291544233|emb|CBL17342.1| GMP synthase (glutamine-hydrolyzing) [Ruminococcus sp. 18P13]
          Length = 554

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++A+SGGVDSSV+AALL    G  +  V     +     K +G         +   
Sbjct: 256 DGRVLLALSGGVDSSVLAALLAEAIGERLTCVF---VDHGLMRKNEGD--------EVEA 304

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FSD-LLSVTR 134
                +V+    + EERF +           AG   +      R +    F         
Sbjct: 305 AFAKWDVNFVRVNAEERFLSK---------LAG---VEDPQEKRHIIGAEFGYVFRDEAE 352

Query: 135 QLGA---DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD---L 188
           + G    D LA G        V + G+    + +    +            + +     +
Sbjct: 353 RFGITKQDFLAQG---TIYPDVIESGQGDADVIKSHHNK--------LLPAEVVARFQDV 401

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR L RE+GL 
Sbjct: 402 LEPLSLLFKDEVRQLGRELGLP 423


>gi|298506230|gb|ADI84953.1| guanosine monophosphate synthase [Geobacter sulfurreducens KN400]
          Length = 520

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSV AAL+ R  G  +  V                  A  D   A    
Sbjct: 224 RVILGLSGGVDSSVAAALIHRAIGDQLTCVF---------VDNGLLRLAEGDQVMATF-A 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----- 135
           + + V     D E+RF  A          AGE      +  R +  +  + +  +     
Sbjct: 274 ENLGVKVIRVDAEQRFLTA---------LAGE---ADPEKKRKIIGNLFVEIFEEESNRI 321

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +    +           +    +     L  PL ++
Sbjct: 322 EDATWLAQGTIYPDVIESAGSKTGKAHNIKSHHN-------VGGLPEYMKLKLLEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 375 FKDEVRAIGEELGLP 389


>gi|226228191|ref|YP_002762297.1| NH(3)-dependent NAD (+) synthetase [Gemmatimonas aurantiaca T-27]
 gi|226091382|dbj|BAH39827.1| NH(3)-dependent NAD (+) synthetase [Gemmatimonas aurantiaca T-27]
          Length = 641

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 64/191 (33%), Gaps = 44/191 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + VV +SGGVDS+V AAL  R  G  +VIGV L                + + +  A+ V
Sbjct: 401 KAVVGISGGVDSAVTAALAVRALGASNVIGVRL-----------PYRTSSAESLDHAQLV 449

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +     D         I P    Y A E   P                 R+    
Sbjct: 450 IDALGIESRTLD---------ISPAVDGYLANE---PDA------------DGARRGNV- 484

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                   R R+    D   R          + +  F + T          P+GD+ K  
Sbjct: 485 ------MARVRMIALFDLSARYRALPLGTGNKTERLFGYFTWHADDSPPVNPIGDLYKTQ 538

Query: 200 VRDLAREMGLD 210
           V +LAR + L 
Sbjct: 539 VWELARHLELP 549


>gi|254173555|ref|ZP_04880227.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
 gi|214032247|gb|EEB73077.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
          Length = 263

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 48/232 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D ++++  SGG DSS+   LLK    +V  +T                   + +  A +
Sbjct: 21  RDRKILMLFSGGKDSSLALYLLKEAKLNVSALTF-----------FHRWSWRETLNWAMK 69

Query: 79  VCDTINVSHYVFDYEE-RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V HY+ D  E   R AV          G     C+ C + + ++         G
Sbjct: 70  FTKNLGVEHYLVDITEGLLREAV----------GRKGPVCIHCKKVMLWNAKW-FAINNG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY---FLFATTQQQLCDLRFPLGD 194
            DVLA G     ++                    DQ      L    +  L  +  PL  
Sbjct: 119 FDVLAKGDNANDKII---------------GALLDQCSGDIRLCELPRIGLP-ILRPLIR 162

Query: 195 MKKESVRDLAREMGL------DIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
              E V +LA E+G+      + A +   ++ C +Q     + +K     +A
Sbjct: 163 YTAEEVEELADEVGIKPYRMYEHARRRQWREGCPLQYIDTEETIKPELMDLA 214


>gi|294677395|ref|YP_003578010.1| GMP synthase [Rhodobacter capsulatus SB 1003]
 gi|294476215|gb|ADE85603.1| GMP synthase-1 (glutamine-hydrolyzing) [Rhodobacter capsulatus SB
           1003]
          Length = 518

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 74/238 (31%), Gaps = 60/238 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV+  +SGGVDSSV A L+    G  +  V      ++L  + +              
Sbjct: 220 DKRVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRLNEADEVVSMFR-------- 271

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D  N+     D  + F      V  P       G+                  
Sbjct: 272 -------DNYNIPLIHADEADLFIGALEGVSDPEVKRKTIGKLF-----------IDVFQ 313

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++ GA+ LA G      +          +  +           +    ++    L 
Sbjct: 314 REANKIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLV 366

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            PL ++ K+ VR L RE+GL            F+ +  +         G+A+   G+I
Sbjct: 367 EPLRELFKDEVRALGRELGLPEK---------FIGRHPF------PGPGLAIRCPGEI 409


>gi|196234632|ref|ZP_03133450.1| GMP synthase, large subunit [Chthoniobacter flavus Ellin428]
 gi|196221301|gb|EDY15853.1| GMP synthase, large subunit [Chthoniobacter flavus Ellin428]
          Length = 521

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSV AALL +  G  +  V +                   +    +R
Sbjct: 218 DDHVILGLSGGVDSSVAAALLHKAIGDQLTCVFVNN-----------GLLRSNEAETVQR 266

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDL---LSVT 133
           V  D  +V     D   RF   +                 +  N  V+ F D    L+  
Sbjct: 267 VFGDNFHVKLKYVDASTRFLKKLKGVTDPERKRK------IIGNEFVRVFEDATKQLTRG 320

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++     LA G      +     G     + +           +    +     L  PL 
Sbjct: 321 KKSKFKFLAQGTLYPDVIESVAIGGNPASLIKSHHN-------VGGLPKNMKFKLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR++  ++GL 
Sbjct: 374 QLFKDEVREVGAQLGLP 390


>gi|326386574|ref|ZP_08208196.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208889|gb|EGD59684.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 519

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 73/219 (33%), Gaps = 43/219 (19%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLY 55
            ++E  +    ++ +   D RV+  +SGGVDS+V A L+    G  +  V      ++L 
Sbjct: 203 TMAEFRKTKIAEIREQVGDARVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRLG 262

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGE 112
            + +                     +  N+     D    F      V  P A     G+
Sbjct: 263 EAEQVVGLFR---------------NHYNIPLVHRDASTLFLKGLEGVTDPEAKRKFIGK 307

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
           T                    RQ+ GAD LA G      +          +  +      
Sbjct: 308 TF-----------IDVFEEEARQVGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-- 354

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +    ++    L  PL ++ K+ VR+L RE+GL 
Sbjct: 355 -----VGGLPERMNMKLVEPLRELFKDEVRELGRELGLP 388


>gi|312128589|ref|YP_003993463.1| nad+ synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778608|gb|ADQ08094.1| NAD+ synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 540

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV++                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLAVEALGRENVLGVSM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
            + DA+ + + + +   ++         V   +   +   ETPL  + 
Sbjct: 328 SIKDAKSLAENLGIEFRIYPI-----EDVFRAYLRMFNTSETPLQDLA 370


>gi|227532775|ref|ZP_03962824.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189609|gb|EEI69676.1| argininosuccinate synthase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 406

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V L +   +                D+     
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNVGQPKADFDAIQQKALNVGALDS----- 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                  V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 59  ------IVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|167770719|ref|ZP_02442772.1| hypothetical protein ANACOL_02065 [Anaerotruncus colihominis DSM
           17241]
 gi|167667314|gb|EDS11444.1| hypothetical protein ANACOL_02065 [Anaerotruncus colihominis DSM
           17241]
          Length = 248

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 69/202 (34%), Gaps = 52/202 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  RV VA SGGVDS   A LL   K  G DV    +                   ++ D
Sbjct: 9   EHPRVAVAFSGGVDS---AYLLYAAKTAGCDVHAYFIH-----------SQFQPRFELDD 54

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +R  + ++V   V D      + +  P           L C  C R + F+ L    R 
Sbjct: 55  TQRFVEMLHVPLTVLDC-----DVLSDPAVC----ANDTLRCYYCKRAL-FTRLWQAARA 104

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--G 193
            G DVL  G          D+   R  M R +D                   +  PL   
Sbjct: 105 DGYDVLCDG------TNASDEAADRPGM-RALDELE----------------VLSPLRIC 141

Query: 194 DMKKESVRDLAREMGLDIADKS 215
            + K  +R L+++ GL   DK 
Sbjct: 142 GLTKTDIRALSKQAGLFTHDKP 163


>gi|283783148|ref|YP_003373902.1| argininosuccinate synthase [Gardnerella vaginalis 409-05]
 gi|283442007|gb|ADB14473.1| argininosuccinate synthase [Gardnerella vaginalis 409-05]
          Length = 404

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             R+V+A SGG+D+SV    LK   G DV+ V+L +    +A +   +        +A  
Sbjct: 4   KKRIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGAVEA-- 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D  E F +   +    + A  E   P V   +R +    L++   Q  
Sbjct: 62  ---------YVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQFD 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMK 196
           AD +A G                   C       DQ  F  A            P+ D+ 
Sbjct: 113 ADTIAHG-------------------CTGK--GNDQVRFEVAIQSLDPELKAISPIRDLS 151

Query: 197 KE---SVRDLAREMGLDIADKSDS 217
                 + + A E  L I     S
Sbjct: 152 LTRDVEI-EFANEHKLPIEQSKKS 174


>gi|261367083|ref|ZP_05979966.1| GMP synthase [Subdoligranulum variabile DSM 15176]
 gi|282571204|gb|EFB76739.1| GMP synthase [Subdoligranulum variabile DSM 15176]
          Length = 514

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 36/204 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   D +V+ A+SGGVDSSV AA+L +  G  +  V      L+ +   +  +  G  
Sbjct: 209 LREKIGDGKVLCALSGGVDSSVCAAMLAKAIGKQLTCVFVDHGLLRKHEREQVCEVFGEG 268

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                           +++    D  +RF   +    A            +     ++  
Sbjct: 269 G-------------QFDINFVCVDARDRFYTKLAGETAPERKRK------IIGEEFIRV- 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++GA D LA G      +  G  G+            +               
Sbjct: 309 -FEDEAKKIGAVDFLAQGTIYPDVVESGLGGE--------SATIKSHHNVGGLPDYVDFK 359

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL D+ K+ VR   RE+GL 
Sbjct: 360 EIVEPLRDLFKDEVRQAGRELGLP 383


>gi|153952329|ref|YP_001397662.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|226738413|sp|A7H2D2|GUAA_CAMJD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|152939775|gb|ABS44516.1| GMP synthase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 511

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++ 
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVT 133
                +T+ +     D  E F         S  A    P     +  N  +         
Sbjct: 267 -----NTLGIDLISIDASEIF--------LSRLANVRDPEQKRKIIGNTFI--EIFEEEA 311

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++      LA G      +     G  + I  +           +    ++    L  PL
Sbjct: 312 KKHKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKINLKLIEPL 362

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L  E+GL 
Sbjct: 363 KEIFKDEVRALGLELGLS 380


>gi|237750858|ref|ZP_04581338.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229373303|gb|EEO23694.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 354

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 24  VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            VA+ SGG+DS +   LL   G  V  +   +          G                 
Sbjct: 8   AVALFSGGLDSMISMQLLHEQGIKVYALNFNI----------GFGSNKDKSEYFYNAAKQ 57

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +       +  ++F + ++  F   Y  G+   PC+DC+  + FS   +   +L AD   
Sbjct: 58  VGAELIQINIAKQFFDNIL--FKPQYGYGKYFNPCIDCHANM-FSHAFAKMVELKADFAI 114

Query: 143 TGHYIRSRLYVG 154
           +G  +  R    
Sbjct: 115 SGEVLGQRPKSQ 126


>gi|312623382|ref|YP_004024995.1| nad+ synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203849|gb|ADQ47176.1| NAD+ synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 540

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLAAEALGPENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DA+++ + + +   V+  EE F+
Sbjct: 328 SLKDAKQLAENLGIEFRVYSIEEPFK 353


>gi|297243608|ref|ZP_06927539.1| argininosuccinate synthase [Gardnerella vaginalis AMD]
 gi|296888359|gb|EFH27100.1| argininosuccinate synthase [Gardnerella vaginalis AMD]
          Length = 404

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             R+V+A SGG+D+SV    LK   G DV+ V+L +    +A +   +        +A  
Sbjct: 4   KKRIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGAVEA-- 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D  E F +   +    + A  E   P V   +R +    L++   Q  
Sbjct: 62  ---------YVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQFD 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMK 196
           AD +A G                   C       DQ  F  A            P+ D+ 
Sbjct: 113 ADTIAHG-------------------CTGK--GNDQVRFEVAIQSLDPELKAISPIRDLS 151

Query: 197 KE---SVRDLAREMGLDIADKSDS 217
                 + + A E  L I     S
Sbjct: 152 LTRDVEI-EFANEHKLPIEQSKKS 174


>gi|291521316|emb|CBK79609.1| conserved hypothetical protein TIGR00268 [Coprococcus catus GD/7]
          Length = 269

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 65/203 (32%), Gaps = 58/203 (28%)

Query: 25  VAMSGGVDSSVVAALLKRD-------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           VA SGGVDSSV   +L+         G  V  VT            +       D+  A+
Sbjct: 21  VAFSGGVDSSV---ILRAACEAAAANGKKVYAVTF-----------ETKLHPKADLPQAQ 66

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQL 136
           +V       H+V    E                   P   C  C + + F +LL+   + 
Sbjct: 67  KVAKEAGAIHHVIYVNELDNEE----------MLNNPVNRCYLCKKYL-FQNLLTFAAEK 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G D +  G+            +  + +                        +  PL +  
Sbjct: 116 GIDTIMEGNNADDLHIYRPGTQAVKELG-----------------------VLSPLAELG 152

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
           + K  VR++A +MGL  A +  S
Sbjct: 153 ITKAQVREIAADMGLSCATRPSS 175


>gi|290890450|ref|ZP_06553525.1| hypothetical protein AWRIB429_0915 [Oenococcus oeni AWRIB429]
 gi|290479846|gb|EFD88495.1| hypothetical protein AWRIB429_0915 [Oenococcus oeni AWRIB429]
          Length = 406

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY+VI V+L                 G+ + + ++   
Sbjct: 4   KIVLAYSGGLDTSVTIPWLKDKGYEVIAVSL------------DVGQHGKQIENIQKKAL 51

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            I  +  ++ D ++ F    +     S A  E   P V   +R +    L+       A 
Sbjct: 52  KIGAIQSFIIDGKDEFAENYVSKVIKSNALYEGEYPLVSALSRPLIIEKLVQTAHDNNAV 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AIAHG 116


>gi|218288250|ref|ZP_03492549.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218241609|gb|EED08782.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 509

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+VA+SGGVDSSV AAL+ R  G+ +  +            RKG      D    + 
Sbjct: 214 DKRVLVAISGGVDSSVAAALVHRAIGHQLTAMF-----VDHGLLRKG----ESDSVM-QS 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           + D + +     D +ERF              G T     +  R +            + 
Sbjct: 264 LRDKLGIDVVRVDAKERFLGR---------LEGVT---DPERKRKIIGEEFIRVFEEESE 311

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +LG       + ++  LY    + G       +           +    +    ++  PL
Sbjct: 312 RLG----PFDYLVQGTLYTDIIESGTHTAATIKSHHN-------VGGLPEDVRFEIIEPL 360

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR L   +GL 
Sbjct: 361 RDLFKDEVRRLGEALGLA 378


>gi|187251179|ref|YP_001875661.1| GMP synthase, large subunit [Elusimicrobium minutum Pei191]
 gi|226738452|sp|B2KCS8|GUAA_ELUMP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|186971339|gb|ACC98324.1| GMP synthase, large subunit [Elusimicrobium minutum Pei191]
          Length = 510

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 74/201 (36%), Gaps = 35/201 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K      V+  +SGGVDSSVVAALL +     IG  L          R G     + +
Sbjct: 208 MKKQIGKGHVICGLSGGVDSSVVAALLAKA----IGKNLYCIYVDTGLLRTGDRERTEGL 263

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                    + V+  + D E+ F             AG T     +  R +  +  + V 
Sbjct: 264 ------AKKLKVNLKIVDAEKLFLTK---------LAGVT---DPEKKRKIIGALFIEVF 305

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++   A  LA G        +  D      +  P D+ +   + +    ++    L
Sbjct: 306 EKEAKKFKDAQFLAQG-------TLYPDVIESMSVKGPSDVIKSH-HNVGGLPEKMNLKL 357

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + K+ VR L RE+GL
Sbjct: 358 VEPLRFLFKDEVRALGRELGL 378


>gi|222528265|ref|YP_002572147.1| NAD+ synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455112|gb|ACM59374.1| NAD+ synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 540

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLAAEALGPENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DA+++ + + +   V+  EE F+
Sbjct: 328 SLKDAKQLAENLGIEFRVYSIEEPFK 353


>gi|115377691|ref|ZP_01464884.1| GMP synthase (glutamine-hydrolyzing) [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365297|gb|EAU64339.1| GMP synthase (glutamine-hydrolyzing) [Stigmatella aurantiaca
           DW4/3-1]
          Length = 530

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 67/199 (33%), Gaps = 40/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+  +SGGVDSSV A LL R     IG  LQ         R+      +   +A  V
Sbjct: 233 EGRVICGLSGGVDSSVAALLLHRA----IGPRLQCIFVDNGLLRQ----DERAQVEALFV 284

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            D  +V     D  ERF      V  P       G               +      R++
Sbjct: 285 -DRFHVPLKTVDARERFLQKLAGVTDPEKKRKTIGREF-----------IAVFEEAAREV 332

Query: 137 -GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             A  LA        I S  Y G     +                +    +Q    L  P
Sbjct: 333 QDAGFLAQGTLYPDVIESVSYKGPSVTIKSHHN------------VGGLPEQMKLKLVEP 380

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L RE+GL 
Sbjct: 381 LRELFKDEVRVLGRELGLP 399


>gi|85702789|ref|ZP_01033893.1| GMP synthase [Roseovarius sp. 217]
 gi|85671717|gb|EAQ26574.1| GMP synthase [Roseovarius sp. 217]
          Length = 523

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V                      + +A+ 
Sbjct: 225 DKQVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLNEAQD 270

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D  N+     D  + F            +  ET    +     +          
Sbjct: 271 VVTMFRDNYNIPLIHADESDLFLGE-----LDGVSDPETKRKIIG---RLFIDVFQKHAN 322

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 323 EIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 375

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL      +S    F+ +  +         G+A+   G+I
Sbjct: 376 ELFKDEVRALGRELGLP-----ES----FIGRHPF------PGPGLAIRCPGEI 414


>gi|298253916|ref|ZP_06977503.1| argininosuccinate synthase [Gardnerella vaginalis 5-1]
 gi|297532059|gb|EFH71034.1| argininosuccinate synthase [Gardnerella vaginalis 5-1]
          Length = 404

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             R+V+A SGG+D+SV    LK   G DV+ V+L +    +A +   +        +A  
Sbjct: 4   KKRIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGAVEA-- 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D  E F +   +    + A  E   P V   +R +    L++   Q  
Sbjct: 62  ---------YVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQFD 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMK 196
           AD +A G                   C       DQ  F  A            P+ D+ 
Sbjct: 113 ADTIAHG-------------------CTGK--GNDQVRFEVAIQSLDPELKAISPIRDLS 151

Query: 197 KE---SVRDLAREMGLDIADKSDS 217
                 + + A E  L I     S
Sbjct: 152 LTRDVEI-EFANEHKLPIEQSKKS 174


>gi|320667595|gb|EFX34510.1| GMP synthase [Escherichia coli O157:H7 str. LSU-61]
          Length = 525

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHIPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|258510406|ref|YP_003183840.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477132|gb|ACV57451.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 509

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+VA+SGGVDSSV AAL+ R  G+ +  +            RKG      D    + 
Sbjct: 214 DKRVLVAISGGVDSSVAAALVHRAIGHQLTAMF-----VDHGLLRKG----ESDSVM-QS 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           + D + +     D +ERF              G T     +  R +            + 
Sbjct: 264 LRDKLGIDVVRVDAKERFLGR---------LEGVT---DPERKRKIIGEEFIRVFEEESE 311

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +LG       + ++  LY    + G       +           +    +    ++  PL
Sbjct: 312 RLG----PFDYLVQGTLYTDIIESGTHTAATIKSHHN-------VGGLPEDVRFEIIEPL 360

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR L   +GL 
Sbjct: 361 RDLFKDEVRRLGEALGLA 378


>gi|149375102|ref|ZP_01892874.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinobacter algicola DG893]
 gi|149360466|gb|EDM48918.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinobacter algicola DG893]
          Length = 525

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSV AALL +  G  +  V      L+L    +                
Sbjct: 229 KVLLGLSGGVDSSVTAALLHKAIGDQLTCVFVDNGLLRLNEGDQVMDMF----------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTR 134
                  + V     D E+ F + +                 +  N  +  F D      
Sbjct: 278 ----ASNMGVKVIRVDAEDLFLSKLKGIDDPEKKRK------IIGNTFIDVFDD--EAAN 325

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
               + LA G      +        +  + +           +    +     L  PL +
Sbjct: 326 IRDVNWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPETMKMKLVEPLRE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 379 LFKDEVRRIGLELGLP 394


>gi|326571721|gb|EGE21734.1| GMP synthase [Moraxella catarrhalis BC8]
 gi|326574365|gb|EGE24308.1| GMP synthase [Moraxella catarrhalis CO72]
          Length = 519

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLLDLFKDEVRKLGVALGIP 388


>gi|222150837|ref|YP_002559990.1| argininosuccinate synthase [Macrococcus caseolyticus JCSC5402]
 gi|222119959|dbj|BAH17294.1| argininosuccinate synthase [Macrococcus caseolyticus JCSC5402]
          Length = 402

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 33/201 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L   GY+VI   L                 G+D+   + 
Sbjct: 3   EKQKVVLAYSGGLDTSVAIQWLIEKGYEVIACCL-------------DVGEGKDLAHIKE 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  +   + D  E +    +       +  E   P +   +R +    L+ V  Q 
Sbjct: 50  KALKVGAIESIMLDKIETYAEDYLSYAIKGNSLYENTYPLISALSRPLIAEALVEVAHQH 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  +A G         G+D  R  +    +D        L                   
Sbjct: 110 EAKFIAHG-----CTGKGNDQVRFEVAIHSIDPS---ITTLAPVRDWGFSR--------- 152

Query: 197 KESVRDLAREMGLDIADKSDS 217
            E   + A+   + +    +S
Sbjct: 153 -EEEIEYAKAHDIPVPINLES 172


>gi|225174283|ref|ZP_03728282.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225170068|gb|EEG78863.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 435

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V          +         + V +  +
Sbjct: 140 DKKVLLALSGGVDSSVVAALLIKAIGKQLVCVH--------VNHGLMRKNESEAVVEVFK 191

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + ++ +    D  ERF N +                 V     ++        R+L G
Sbjct: 192 --NQLDANLIYVDASERFLNKLANVSDPEEKRK------VIGTEFIRV--FEEEARKLEG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLGDMK 196
            D LA G        + + G +   + +           +    +  Q   L  PL  + 
Sbjct: 242 IDFLAQG---TIYPDIVESGTKTASVVKSHHN-------VGGLPEDLQFS-LVEPLYHLF 290

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+GL 
Sbjct: 291 KDEVRACGIELGLP 304


>gi|157164253|ref|YP_001466243.1| ATP-binding protein [Campylobacter concisus 13826]
          Length = 324

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 77/250 (30%), Gaps = 49/250 (19%)

Query: 28  SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSH 87
           SGG+DS +   ++     +V+ + +            G     +     RR       S 
Sbjct: 3   SGGLDSMLSMKIISDQNIEVVALYM----------DTGFGVDEEKHEVLRRRAALAGASL 52

Query: 88  YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
            V D    +   V+  F   Y  G+   PC+DC+  + F   L++ +   A+ + TG  +
Sbjct: 53  KVVDMRNEYLRDVL--FNPKYGYGKQFNPCIDCHGYM-FKTALNMLKSENANFIITGEVV 109

Query: 148 RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD----- 202
             R            + R  D E D          + +C    P     K   R+     
Sbjct: 110 GQRPMSQRR-DALFQVKRLADDEDD-------LVLRPMCAKLLPP---TKPE-REGWVDR 157

Query: 203 ----------------LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
                           LA+E G +          C +    +   +K        E   +
Sbjct: 158 EKLLDISGRDRKPQLALAKEFGFEDFATPG--GGCLLTIESFAVKIKDYLKF-DKEMRDI 214

Query: 247 HLNGQILGRH 256
            +    LGRH
Sbjct: 215 DVTWLKLGRH 224


>gi|308235810|ref|ZP_07666547.1| argininosuccinate synthase [Gardnerella vaginalis ATCC 14018]
 gi|311114472|ref|YP_003985693.1| argininosuccinate synthase [Gardnerella vaginalis ATCC 14019]
 gi|310945966|gb|ADP38670.1| argininosuccinate synthase [Gardnerella vaginalis ATCC 14019]
          Length = 404

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              R+V+A SGG+D+SV    LK   G DV+ V+L +    +A          + + +  
Sbjct: 3   SKKRIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEA---------LEVIKNRA 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             C    V  YV D  E F +   +    + A  E   P V   +R +    L+    + 
Sbjct: 54  LACGA--VESYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVHAAHEF 111

Query: 137 GADVLATG 144
            AD +A G
Sbjct: 112 DADTIAHG 119


>gi|92118055|ref|YP_577784.1| GMP synthase [Nitrobacter hamburgensis X14]
 gi|122990144|sp|Q1QKC3|GUAA_NITHX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91800949|gb|ABE63324.1| GMP synthase (glutamine-hydrolyzing) [Nitrobacter hamburgensis X14]
          Length = 540

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 43/232 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDSSV A L+    G  +  V     +     K +G        +    
Sbjct: 237 KGRVICGLSGGVDSSVAAILIHEAIGEQLTCVF---VDHGMLRKDEGKTVVELFRH---- 289

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                N+     D  ++F      V  P       G      V      K + L     +
Sbjct: 290 ---HYNIPLVHVDASKQFLGELAGVTDPEMKRKTIGRLF-IDVFEAEAKKIAAL----GK 341

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A+ LA G      +          +  +           +     +    L  PL ++
Sbjct: 342 GSAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMNMKLVEPLREL 394

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            K+ VR L RE+GL         +I FV +  +         G+A+   G+I
Sbjct: 395 FKDEVRALGRELGLP--------EI-FVGRHPF------PGPGLAIRCPGEI 431


>gi|325967840|ref|YP_004244032.1| queuosine synthesis protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707043|gb|ADY00530.1| Queuosine synthesis [Vulcanisaeta moutnovskia 768-28]
          Length = 235

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R ++ +SGG+DS+V   LLK   YDV+ +++  Y  R   +R+           AR +
Sbjct: 2   KKRAILLLSGGIDSAVALYLLKSRNYDVVAISI-NYPGRGERERES----------ARIL 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-----SYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               N      D    F   ++  + +      +     P      N  + ++       
Sbjct: 51  AKLTNTRLIEVDI--PFMKEIVELWNNKEERPEHLRDAHPSTIPARNA-IIYAVAAYYAE 107

Query: 135 QLGADVLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            LG +++  GH      Y  D  +  R+I+ R + +            + +   +  PL 
Sbjct: 108 ILGINIIVAGHNADDTKYFPDTSRMFRKIISRALTIGT-------HIGKTKGLRVIAPLS 160

Query: 194 DMKKESVRDLAREMGLD 210
            + K  V  L  ++G+ 
Sbjct: 161 KLNKTEVVKLGLKLGVP 177


>gi|121613709|ref|YP_001000924.1| GMP synthase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005834|ref|ZP_02271592.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|226738414|sp|A1W0N3|GUAA_CAMJJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|87249935|gb|EAQ72894.1| GMP synthase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 511

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++ 
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVT 133
                +T+ +     D  E F         S  A    P     +  N  +         
Sbjct: 267 -----NTLGIDLISIDASEIF--------LSRLANVRDPEQKRKIIGNTFI--EVFEEEA 311

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++      LA G      +     G  + I  +           +    ++    L  PL
Sbjct: 312 KKHKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPL 362

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L  E+GL 
Sbjct: 363 KEIFKDEVRALGLELGLS 380


>gi|86152664|ref|ZP_01070869.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843549|gb|EAQ60759.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 511

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++ 
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVT 133
                +T+ +     D  E F         S  A    P     +  N  +         
Sbjct: 267 -----NTLGIDLISIDASEIF--------LSRLANVRDPEQKRKIIGNTFI--EVFEEEA 311

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++      LA G      +     G  + I  +           +    ++    L  PL
Sbjct: 312 KKHKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPL 362

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L  E+GL 
Sbjct: 363 KEIFKDEVRALGLELGLS 380


>gi|86150709|ref|ZP_01068925.1| GMP synthase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124708|ref|YP_004066712.1| GMP synthase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85841879|gb|EAQ59125.1| GMP synthase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018430|gb|ADT66523.1| GMP synthase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 511

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++ 
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVT 133
                +T+ +     D  E F         S  A    P     +  N  +         
Sbjct: 267 -----NTLGIDLISIDASEIF--------LSRLANVRDPEQKRKIIGNTFI--EVFEEEA 311

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++      LA G      +     G  + I  +           +    ++    L  PL
Sbjct: 312 KKHKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPL 362

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L  E+GL 
Sbjct: 363 KEIFKDEVRALGLELGLS 380


>gi|310821570|ref|YP_003953928.1| gmp synthase [Stigmatella aurantiaca DW4/3-1]
 gi|309394642|gb|ADO72101.1| GMP synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 517

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 67/199 (33%), Gaps = 40/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+  +SGGVDSSV A LL R     IG  LQ         R+      +   +A  V
Sbjct: 220 EGRVICGLSGGVDSSVAALLLHRA----IGPRLQCIFVDNGLLRQ----DERAQVEALFV 271

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            D  +V     D  ERF      V  P       G               +      R++
Sbjct: 272 -DRFHVPLKTVDARERFLQKLAGVTDPEKKRKTIGREF-----------IAVFEEAAREV 319

Query: 137 -GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             A  LA        I S  Y G     +                +    +Q    L  P
Sbjct: 320 QDAGFLAQGTLYPDVIESVSYKGPSVTIKSHHN------------VGGLPEQMKLKLVEP 367

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L RE+GL 
Sbjct: 368 LRELFKDEVRVLGRELGLP 386


>gi|253698721|ref|YP_003019910.1| thiamine biosynthesis protein [Geobacter sp. M21]
 gi|251773571|gb|ACT16152.1| thiamine biosynthesis protein [Geobacter sp. M21]
          Length = 334

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 92/272 (33%), Gaps = 40/272 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV--YDAR 77
             + +  +SGG+DS++   +L   G  V  +          +    +C         +A 
Sbjct: 2   QRKAIALLSGGLDSTLAVKVLLDQGIAVEAL--------NFTSPFCTCTGKNAGCKSEAV 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           RV +   +   V      +   V  P    +  G+   PC+DC        LL   ++  
Sbjct: 54  RVAEDFKIPIKVMHKGADYLEVVRNP---KHGHGKGMNPCIDCRIF-----LLKKAKEYM 105

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQQ 184
              GAD + TG  +  R         R I         + RP+  +  Q           
Sbjct: 106 LESGADFVFTGEVLGQRPMSQRRDTLRIIEKESGLEGLLLRPLSAKHFQPTIPEQEGWVD 165

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
              L    G  +KE   +LA E  LD+ +       C + +  +   ++ +    + E +
Sbjct: 166 REKLLSIQGRSRKEQ-FELAAE--LDVKNYPCPAGGCLLTELSFVGKIRDVFDH-SDELN 221

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGE 276
           +       LGRH     + IG R  + +   E
Sbjct: 222 MRDFRLLKLGRH-----FRIGPRTKVILGRNE 248


>gi|116515666|ref|YP_815608.1| argininosuccinate synthase [Streptococcus pneumoniae D39]
 gi|237649603|ref|ZP_04523855.1| argininosuccinate synthase [Streptococcus pneumoniae CCRI 1974]
 gi|237821347|ref|ZP_04597192.1| argininosuccinate synthase [Streptococcus pneumoniae CCRI 1974M2]
 gi|34921753|sp|Q8DRI5|ASSY_STRR6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|122279483|sp|Q04MW7|ASSY_STRP2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116076242|gb|ABJ53962.1| argininosuccinate synthase [Streptococcus pneumoniae D39]
          Length = 398

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|14520772|ref|NP_126247.1| hypothetical protein PAB1992 [Pyrococcus abyssi GE5]
 gi|5457988|emb|CAB49478.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5]
          Length = 260

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 21/133 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++  SGG DSS+   +LK  GYDV  +T                   + +    + 
Sbjct: 20  EKKVLLLFSGGKDSSLALYILKEAGYDVSALTF-----------FHKWSWPEVIKWGMKF 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ V HY+ D  E              + G     CV C + + ++         G +
Sbjct: 69  TKSLGVEHYLVDLTEG---------LRRVSIGRKGPICVHCKKIMLWNAKW-FALNNGFE 118

Query: 140 VLATGHYIRSRLY 152
           +LA G     ++ 
Sbjct: 119 ILAKGDNANDKIV 131


>gi|326563088|gb|EGE13361.1| GMP synthase [Moraxella catarrhalis 12P80B1]
          Length = 519

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGIRVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLLDLFKDEVRKLGVALGIP 388


>gi|254499274|ref|ZP_05111950.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Legionella drancourtii LLAP12]
 gi|254351518|gb|EET10377.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Legionella drancourtii LLAP12]
          Length = 525

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 46/201 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +I V      L+L  +    K  G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHKAIGDQLICVFVDTGLLRLNEADDVMKMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                  + ++    + EE+F  A           G T   C +  R +     + V  +
Sbjct: 278 -----QHMGINIIAVNAEEKFLGA---------LKGIT---CPEEKRKIIGHTFIEVFDE 320

Query: 136 -----LGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                 G   LA G  Y         +     ++ +           +    +     L 
Sbjct: 321 EAHKITGISWLAQGTIYPDVIESAATNINGASVVIKSHHN-------VGGLPETLKLKLL 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            P+ ++ K+ VR +  E+GL 
Sbjct: 374 EPVRELFKDEVRSIGLELGLP 394


>gi|224437605|ref|ZP_03658558.1| GMP synthase [Helicobacter cinaedi CCUG 18818]
 gi|313144055|ref|ZP_07806248.1| GMP synthase [Helicobacter cinaedi CCUG 18818]
 gi|313129086|gb|EFR46703.1| GMP synthase [Helicobacter cinaedi CCUG 18818]
          Length = 583

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 78/216 (36%), Gaps = 40/216 (18%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASK 62
            EAT+ NSL   + P   +V+ A+SGGVDSSVVA LL R  G ++I V            
Sbjct: 268 DEATKSNSLKNTQKPTQ-KVLCAVSGGVDSSVVAILLYRAIGENLIPVF-----VDTGLL 321

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVD 119
           RKG   A + ++      + + V   V D  E F   +             GET +   +
Sbjct: 322 RKGEREAVEAMFK-----ENLKVPLIVADARELFLRRLKGVTEPEQKRKIIGETFIEVFE 376

Query: 120 C-----NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
                 N   +   L        A        I S    G     +              
Sbjct: 377 AEAKKHNTKGEIKFL--------AQGTLYPDVIESVSVKGPSKTIKSHHN---------- 418

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +    +L  PL ++ K+ VR L RE+G+ 
Sbjct: 419 --VGGLPEWMKFELIEPLRELFKDEVRALGRELGMP 452


>gi|148238384|ref|YP_001223771.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 7803]
 gi|147846923|emb|CAK22474.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus sp. WH 7803]
          Length = 539

 Score = 65.6 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 235 DKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 286

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
               N+     +  +RF + +                 +     ++       +R+LG  
Sbjct: 287 -RKFNIHVEYINARQRFLDKLKDITDPEQKRK------IIGTEFIRV--FEEESRRLGPF 337

Query: 139 DVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           D LA G  Y       G D   +      + ++   +  +    +     L  PL  + K
Sbjct: 338 DYLAQGTLYPDVIESAGTDVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLRKLFK 395

Query: 198 ESVRDLAREMGLD 210
           + VR + R +GL 
Sbjct: 396 DEVRKVGRSLGLP 408


>gi|238063187|ref|ZP_04607896.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
 gi|237884998|gb|EEP73826.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149]
          Length = 95

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCD 81
           + AMSGGVDS+V AA     G+DV GV L L  + + + R G   CC  +D  DARR  D
Sbjct: 2   LAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDARDARRAAD 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
            + +  YV+D  +RF   V+   + S  AG  P P
Sbjct: 61  VLGIPFYVWDMADRFHADVVTTSSPSTRAGPYPEP 95


>gi|218548059|ref|YP_002381850.1| GMP synthase [Escherichia fergusonii ATCC 35469]
 gi|226738455|sp|B7LKD4|GUAA_ESCF3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218355600|emb|CAQ88211.1| GMP synthetase (glutamine aminotransferase) [Escherichia fergusonii
           ATCC 35469]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|33322051|gb|AAQ06744.1|AF496088_1 tRNA -methyltransferase [Lactobacillus delbrueckii subsp. lactis]
          Length = 58

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 254 GRHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308
           G H G++ YTIGQR+GLG+   +    P FVV  D   +++IV   +  +  R+Y   +
Sbjct: 1   GHHAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRL 57


>gi|49481365|ref|YP_038679.1| argininosuccinate synthase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|68566243|sp|Q6HCP7|ASSY_BACHK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|49332921|gb|AAT63567.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 401

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   +  
Sbjct: 3   KKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
             ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q G
Sbjct: 50  ALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 ATAVAHG 116


>gi|324112998|gb|EGC06974.1| GMP synthase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|119029679|gb|ABL59963.1| GMP synthase [uncultured bacterium]
          Length = 419

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 67/209 (32%), Gaps = 47/209 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +     +V+  +SGGVDSSVVA LL +  G   + + +                   
Sbjct: 116 EIRETVGKGKVICGLSGGVDSSVVAMLLNKAIGNRSVPIFIDN--------------GLL 161

Query: 72  DVYDARRVCD---TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
              +AR+V +      V     D  + F      +  P       G   +         K
Sbjct: 162 RHNEARKVKEAFTKFGVKIKTIDASDLFLRRLKGIADPELKRKKIGRAFIEVFSAEAK-K 220

Query: 126 FSDLLSVTRQLGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           F          GA  LA        I S  Y G     +                +    
Sbjct: 221 FK---------GAHFLAQGTLYPDLIESVSYKGPSATIKTHHN------------VGGLP 259

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           ++    L  PL ++ K+ VR + R++GL 
Sbjct: 260 KRMKLKLIEPLKELFKDEVRLVGRKLGLP 288


>gi|148996520|ref|ZP_01824238.1| argininosuccinate synthase [Streptococcus pneumoniae SP11-BS70]
 gi|168577052|ref|ZP_02722881.1| argininosuccinate synthase [Streptococcus pneumoniae MLV-016]
 gi|307066786|ref|YP_003875752.1| argininosuccinate synthase [Streptococcus pneumoniae AP200]
 gi|147757095|gb|EDK64134.1| argininosuccinate synthase [Streptococcus pneumoniae SP11-BS70]
 gi|183577310|gb|EDT97838.1| argininosuccinate synthase [Streptococcus pneumoniae MLV-016]
 gi|306408323|gb|ADM83750.1| Argininosuccinate synthase [Streptococcus pneumoniae AP200]
          Length = 398

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|320175070|gb|EFW50183.1| GMP synthase [Shigella dysenteriae CDC 74-1112]
 gi|320185207|gb|EFW59987.1| GMP synthase [Shigella flexneri CDC 796-83]
 gi|332092793|gb|EGI97862.1| GMP synthase [Shigella boydii 3594-74]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|331648201|ref|ZP_08349291.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli M605]
 gi|330912279|gb|EGH40789.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli AA86]
 gi|331043061|gb|EGI15201.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli M605]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|289191719|ref|YP_003457660.1| exsB protein [Methanocaldococcus sp. FS406-22]
 gi|288938169|gb|ADC68924.1| exsB protein [Methanocaldococcus sp. FS406-22]
          Length = 232

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+V   + K  GY+V  +T             G   A +++  A+++C
Sbjct: 1   MKAITVLSGGLDSTVATLIAKDLGYEVTAITF----------NYGQRAAKREINSAKKIC 50

Query: 81  DTINVSHYVFD--YEERFRNA--VIV---PF-----ASSYAAGETPLPCVDCNRTVK-FS 127
           + + + H V D  + ++F  +  V     P        S  A ET        R V  F 
Sbjct: 51  EILGIEHIVVDLPFVKQFGKSSLVTEKEIPTLKMEELDSEKAFETMKAVWVPARNVIMFG 110

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   L A+ +  G   +       D     +             F        L  
Sbjct: 111 IASGFAEALDAEKIFIG-INKEEGVTFPDNTIEFV-----------EAFNKVLEYGTLNK 158

Query: 188 LRF--PLGDMKKESVRDLAREM 207
           ++   PL D  KE +  L  E+
Sbjct: 159 VKIEAPLYDKTKEEIVKLGAEL 180


>gi|328676062|gb|AEB28737.1| GMP synthase (glutamine-hydrolyzing) [Francisella cf. novicida
           3523]
          Length = 522

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 39/206 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           ++ +   + +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G     
Sbjct: 217 EIKQKVGNDKVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQ 272

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                     + ++++    + + RF +A           G     C    +      L 
Sbjct: 273 VF-------AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLF 312

Query: 131 ------SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                    +   A  LA G      +    + + +  + +           +    ++ 
Sbjct: 313 VDIFDEEAAKIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEM 365

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L   +GL 
Sbjct: 366 KLKLLEPLRELFKDEVRKLGLGLGLP 391


>gi|325496463|gb|EGC94322.1| GMP synthase [Escherichia fergusonii ECD227]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|215487849|ref|YP_002330280.1| GMP synthase [Escherichia coli O127:H6 str. E2348/69]
 gi|312965420|ref|ZP_07779652.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 2362-75]
 gi|254800095|sp|B7UGU5|GUAA_ECO27 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|215265921|emb|CAS10330.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289840|gb|EFR17728.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 2362-75]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|199597668|ref|ZP_03211096.1| Argininosuccinate synthase [Lactobacillus rhamnosus HN001]
 gi|258509812|ref|YP_003172563.1| argininosuccinate synthase [Lactobacillus rhamnosus GG]
 gi|199591475|gb|EDY99553.1| Argininosuccinate synthase [Lactobacillus rhamnosus HN001]
 gi|257149739|emb|CAR88712.1| Argininosuccinate synthase [Lactobacillus rhamnosus GG]
 gi|259651075|dbj|BAI43237.1| argininosuccinate synthase [Lactobacillus rhamnosus GG]
          Length = 406

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI V L +                     A +V  
Sbjct: 4   KIVLAYSGGLDTSVAIPWLMDKGYEVIAVVLNVGQPDADFDAIQQK--------ALKVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +   V D ++ F +  + P   + A  E   P V   +R +    L+ +     A  
Sbjct: 56  ---IDSIVIDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|56459688|ref|YP_154969.1| GMP synthase [Idiomarina loihiensis L2TR]
 gi|81362762|sp|Q5QWW5|GUAA_IDILO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56178698|gb|AAV81420.1| GMP synthase [Idiomarina loihiensis L2TR]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +V 
Sbjct: 229 KVILGLSGGVDSSVTAMLLHRAIGEQLTCVFVDN--------------GLLRLNEAEQVM 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL-G 137
           +     HY  +            F  + A    P     +  N  +          +L  
Sbjct: 275 EMFG-DHYGLNILPIRAE---DRFLDALAGENDPEKKRKIIGNTFI--EIFDEEAGKLTE 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +        +  + +           +    +     L  PL ++ K
Sbjct: 329 VDWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEDMKLGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|24113836|ref|NP_708346.1| GMP synthase [Shigella flexneri 2a str. 301]
 gi|30063899|ref|NP_838070.1| GMP synthase [Shigella flexneri 2a str. 2457T]
 gi|44887952|sp|Q83QL1|GUAA_SHIFL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24052926|gb|AAN44053.1| GMP synthetase (glutamine-hydrolyzing) [Shigella flexneri 2a str.
           301]
 gi|30042154|gb|AAP17880.1| GMP synthetase (glutamine-hydrolyzing) [Shigella flexneri 2a str.
           2457T]
 gi|281601909|gb|ADA74893.1| GMP synthase [Shigella flexneri 2002017]
 gi|313650993|gb|EFS15393.1| GMP synthase [glutamine-hydrolyzing] [Shigella flexneri 2a str.
           2457T]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|16130432|ref|NP_417002.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89109313|ref|AP_003093.1| GMP synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170082117|ref|YP_001731437.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|194437686|ref|ZP_03069782.1| GMP synthase [Escherichia coli 101-1]
 gi|238901672|ref|YP_002927468.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           BW2952]
 gi|253772599|ref|YP_003035430.1| GMP synthase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162481|ref|YP_003045589.1| GMP synthase [Escherichia coli B str. REL606]
 gi|256021807|ref|ZP_05435672.1| GMP synthase [Escherichia sp. 4_1_40B]
 gi|293415772|ref|ZP_06658415.1| GMP synthase [Escherichia coli B185]
 gi|300930147|ref|ZP_07145568.1| GMP synthase protein [Escherichia coli MS 187-1]
 gi|300940246|ref|ZP_07154844.1| GMP synthase protein [Escherichia coli MS 21-1]
 gi|300951788|ref|ZP_07165603.1| GMP synthase protein [Escherichia coli MS 116-1]
 gi|300958864|ref|ZP_07170971.1| GMP synthase protein [Escherichia coli MS 175-1]
 gi|301022357|ref|ZP_07186248.1| GMP synthase protein [Escherichia coli MS 196-1]
 gi|301648262|ref|ZP_07248005.1| GMP synthase protein [Escherichia coli MS 146-1]
 gi|307139142|ref|ZP_07498498.1| GMP synthase [Escherichia coli H736]
 gi|331643126|ref|ZP_08344261.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli H736]
 gi|331653935|ref|ZP_08354936.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli M718]
 gi|121769|sp|P04079|GUAA_ECOLI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; Short=GMPS; AltName: Full=Glutamine
           amidotransferase
 gi|226738445|sp|B1XAY2|GUAA_ECODH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|259647679|sp|C4ZX82|GUAA_ECOBW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1310841|pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|1310842|pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|1310843|pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|1310844|pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|146276|gb|AAB18619.1| GMP synthetase [Escherichia coli]
 gi|1788854|gb|AAC75560.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1805567|dbj|BAA16394.1| GMP synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169889952|gb|ACB03659.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|194423492|gb|EDX39483.1| GMP synthase [Escherichia coli 101-1]
 gi|238861384|gb|ACR63382.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           BW2952]
 gi|242378105|emb|CAQ32878.1| GMP synthetase [Escherichia coli BL21(DE3)]
 gi|253323643|gb|ACT28245.1| GMP synthase, large subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974382|gb|ACT40053.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli B str. REL606]
 gi|253978549|gb|ACT44219.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli BL21(DE3)]
 gi|260448413|gb|ACX38835.1| GMP synthase, large subunit [Escherichia coli DH1]
 gi|291433420|gb|EFF06399.1| GMP synthase [Escherichia coli B185]
 gi|299881294|gb|EFI89505.1| GMP synthase protein [Escherichia coli MS 196-1]
 gi|300314492|gb|EFJ64276.1| GMP synthase protein [Escherichia coli MS 175-1]
 gi|300448985|gb|EFK12605.1| GMP synthase protein [Escherichia coli MS 116-1]
 gi|300454942|gb|EFK18435.1| GMP synthase protein [Escherichia coli MS 21-1]
 gi|300461953|gb|EFK25446.1| GMP synthase protein [Escherichia coli MS 187-1]
 gi|301073649|gb|EFK88455.1| GMP synthase protein [Escherichia coli MS 146-1]
 gi|309702839|emb|CBJ02170.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli ETEC H10407]
 gi|315137131|dbj|BAJ44290.1| GMP synthase [Escherichia coli DH1]
 gi|315615766|gb|EFU96398.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 3431]
 gi|323936400|gb|EGB32690.1| GMP synthase domain-containing protein [Escherichia coli E1520]
 gi|323961317|gb|EGB56929.1| GMP synthase domain-containing protein [Escherichia coli H489]
 gi|323967952|gb|EGB63364.1| GMP synthase domain-containing protein [Escherichia coli M863]
 gi|323971080|gb|EGB66328.1| GMP synthase domain-containing protein [Escherichia coli TA007]
 gi|323977314|gb|EGB72400.1| GMP synthase domain-containing protein [Escherichia coli TW10509]
 gi|327252210|gb|EGE63882.1| GMP synthase [Escherichia coli STEC_7v]
 gi|331039924|gb|EGI12144.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli H736]
 gi|331048784|gb|EGI20860.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli M718]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|313675632|ref|YP_004053628.1| argininosuccinate synthase [Marivirga tractuosa DSM 4126]
 gi|312942330|gb|ADR21520.1| argininosuccinate synthase [Marivirga tractuosa DSM 4126]
          Length = 397

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D++     L K  GY+V  V              G         DA+  
Sbjct: 2   KKVVLAYSGGLDTTFCGLYLSKELGYEVHAV---------LVNTGGFSSEELKAVDAK-- 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              + + S  V D  E F   VI              P  V   R V+   L    +++G
Sbjct: 51  AKKLGIASFTVIDCLETFYQNVIRFLVFGNILKNQTYPLSVSTERIVQAQALAQYAKEIG 110

Query: 138 ADVLATG 144
           AD LA G
Sbjct: 111 ADALAHG 117


>gi|313888971|ref|ZP_07822630.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844957|gb|EFR32359.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 506

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 34/202 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV AALL +  G  +  +     +     K +G     +
Sbjct: 205 EIKEKVGDGKVLLALSGGVDSSVTAALLSKAVGEKLTCIF---VDHGLMRKNEGD-EVEE 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + +     D EERF N           AG T     +  R +   + + 
Sbjct: 261 AFKD-------LGMHFIRVDAEERFLNK---------LAGVT---DPERKRKIIGEEFIR 301

Query: 132 VTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDL 188
           V  + G  + A     +  +Y    + G     + +           +          ++
Sbjct: 302 VFEEEGQKIKAVDFLAQGTIYPDVIESGLGDSAVIKSHHN-------VGGLPDFVDFKEI 354

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VRDL RE+GL 
Sbjct: 355 IEPLRMLFKDEVRDLGRELGLA 376


>gi|223986594|ref|ZP_03636589.1| hypothetical protein HOLDEFILI_03911 [Holdemania filiformis DSM
           12042]
 gi|223961453|gb|EEF65970.1| hypothetical protein HOLDEFILI_03911 [Holdemania filiformis DSM
           12042]
          Length = 513

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A+SGGVDSSVVAALL +     IG  L          RKG          A  V +
Sbjct: 217 KVLLALSGGVDSSVVAALLHKA----IGPQLYCMFIDHGLLRKGE---------AESVME 263

Query: 82  TIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQL 136
           T      ++    D  ++F + +                     +  VK      +    
Sbjct: 264 TFGRNMKLNLTKIDASKKFLDKLKGVSDPEQKRKIIGNEFVYTFDEEVK-----KLAEGE 318

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               LA G        V + G +     +           +    +     L  PL  + 
Sbjct: 319 NIHWLAQG---TLYTDVIESGTQTAQTIKSHHN-------VGGLPEDMQFQLIEPLNTLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR L +E+GL 
Sbjct: 369 KDEVRQLGKELGLP 382


>gi|74313033|ref|YP_311452.1| GMP synthase [Shigella sonnei Ss046]
 gi|91206829|sp|Q3YZ45|GUAA_SHISS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|73856510|gb|AAZ89217.1| GMP synthetase [Shigella sonnei Ss046]
 gi|323169049|gb|EFZ54726.1| GMP synthase [Shigella sonnei 53G]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|301024735|ref|ZP_07188376.1| GMP synthase protein [Escherichia coli MS 69-1]
 gi|300396428|gb|EFJ79966.1| GMP synthase protein [Escherichia coli MS 69-1]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|82777892|ref|YP_404241.1| GMP synthase [Shigella dysenteriae Sd197]
 gi|309784742|ref|ZP_07679375.1| GMP synthase [glutamine-hydrolyzing] [Shigella dysenteriae 1617]
 gi|91206828|sp|Q32D55|GUAA_SHIDS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81242040|gb|ABB62750.1| GMP synthetase (glutamine-hydrolyzing) [Shigella dysenteriae Sd197]
 gi|308927112|gb|EFP72586.1| GMP synthase [glutamine-hydrolyzing] [Shigella dysenteriae 1617]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|32475335|ref|NP_868329.1| GMP synthase [Rhodopirellula baltica SH 1]
 gi|44887935|sp|Q7UFS3|GUAA_RHOBA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|32445876|emb|CAD78607.1| GMP synthase [Rhodopirellula baltica SH 1]
          Length = 587

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 72/202 (35%), Gaps = 33/202 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQ 71
           + K   + RV+  +SGGVDSSVVAALL    Y  IG  L   L ++    K +      +
Sbjct: 283 IRKQVGNKRVICGLSGGVDSSVVAALL----YKAIGPQLSCILVDNGLLRKNEQQIVLEE 338

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    +      ++ + E+RF      +  P       G   + C        F D
Sbjct: 339 FS-------NHFKTDLHIVEAEDRFLADLAGIDEPQEKRRRIGHAFIEC--------FKD 383

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +   A  LA G      +  G D        +           +    ++   +L
Sbjct: 384 --EAAKIEDAHFLAQGTLYPDVIESGADKDGPAATIKLHHN-------VGGLPEELGFEL 434

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D+ K+ VR L  E+GL 
Sbjct: 435 IEPLRDLFKDEVRRLGLELGLP 456


>gi|150020613|ref|YP_001305967.1| GMP synthase [Thermosipho melanesiensis BI429]
 gi|226739759|sp|A6LKY1|GUAA_THEM4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149793134|gb|ABR30582.1| GMP synthase, large subunit [Thermosipho melanesiensis BI429]
          Length = 513

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 26/194 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ +SGGVDSSVVA LL +     IG      ++              +  + +  
Sbjct: 212 NDKVILGLSGGVDSSVVAMLLHKA----IG------DNLVPVFVDTGLLRLNEGEEVKEN 261

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
            + + +  +V D ++RF +A+             G T                   + QL
Sbjct: 262 FERLGIKIFVVDAKKRFLDALKDVEDPEEKRKIIGHTF-----------IDVFYETSMQL 310

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             +     +  +  LY      +         ++   +  +    ++    +  PL  + 
Sbjct: 311 LEEFGNIKYLAQGTLYPDIIESKVSERKSAAKIKTHHN--VGGLPEKLPFKIIEPLRYLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR +   + L 
Sbjct: 369 KDEVRKIGEILELP 382


>gi|229141366|ref|ZP_04269904.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST26]
 gi|228642147|gb|EEK98440.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST26]
          Length = 401

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMMDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GATAVAHG 116


>gi|15832623|ref|NP_311396.1| GMP synthase [Escherichia coli O157:H7 str. Sakai]
 gi|26248868|ref|NP_754908.1| GMP synthase [Escherichia coli CFT073]
 gi|91211830|ref|YP_541816.1| GMP synthase [Escherichia coli UTI89]
 gi|110642669|ref|YP_670399.1| GMP synthase [Escherichia coli 536]
 gi|117624734|ref|YP_853647.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli APEC O1]
 gi|157161982|ref|YP_001459300.1| GMP synthase [Escherichia coli HS]
 gi|168748434|ref|ZP_02773456.1| GMP synthase [Escherichia coli O157:H7 str. EC4113]
 gi|168756279|ref|ZP_02781286.1| GMP synthase [Escherichia coli O157:H7 str. EC4401]
 gi|168761118|ref|ZP_02786125.1| GMP synthase [Escherichia coli O157:H7 str. EC4501]
 gi|168768599|ref|ZP_02793606.1| GMP synthase [Escherichia coli O157:H7 str. EC4486]
 gi|168773579|ref|ZP_02798586.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778473|ref|ZP_02803480.1| GMP synthase [Escherichia coli O157:H7 str. EC4076]
 gi|168787853|ref|ZP_02812860.1| GMP synthase [Escherichia coli O157:H7 str. EC869]
 gi|168798878|ref|ZP_02823885.1| GMP synthase [Escherichia coli O157:H7 str. EC508]
 gi|170019210|ref|YP_001724164.1| GMP synthase [Escherichia coli ATCC 8739]
 gi|170683481|ref|YP_001744692.1| GMP synthase [Escherichia coli SMS-3-5]
 gi|188496435|ref|ZP_03003705.1| GMP synthetase [Escherichia coli 53638]
 gi|191167662|ref|ZP_03029471.1| GMP synthase [Escherichia coli B7A]
 gi|191172898|ref|ZP_03034433.1| GMP synthase [Escherichia coli F11]
 gi|193064741|ref|ZP_03045819.1| GMP synthase [Escherichia coli E22]
 gi|193068319|ref|ZP_03049282.1| GMP synthase [Escherichia coli E110019]
 gi|194427336|ref|ZP_03059886.1| GMP synthase [Escherichia coli B171]
 gi|194432074|ref|ZP_03064363.1| GMP synthase [Shigella dysenteriae 1012]
 gi|195936649|ref|ZP_03082031.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808334|ref|ZP_03250671.1| GMP synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208812438|ref|ZP_03253767.1| GMP synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208819837|ref|ZP_03260157.1| GMP synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209397616|ref|YP_002271977.1| GMP synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209919984|ref|YP_002294068.1| GMP synthase [Escherichia coli SE11]
 gi|217327698|ref|ZP_03443781.1| GMP synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218555032|ref|YP_002387945.1| GMP synthase [Escherichia coli IAI1]
 gi|218559431|ref|YP_002392344.1| GMP synthase [Escherichia coli S88]
 gi|218690622|ref|YP_002398834.1| GMP synthase [Escherichia coli ED1a]
 gi|218696134|ref|YP_002403801.1| GMP synthase [Escherichia coli 55989]
 gi|218701014|ref|YP_002408643.1| GMP synthase [Escherichia coli IAI39]
 gi|227887539|ref|ZP_04005344.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli 83972]
 gi|237705014|ref|ZP_04535495.1| bifunctional GMP synthase/glutamine amidotransferase [Escherichia
           sp. 3_2_53FAA]
 gi|254794453|ref|YP_003079290.1| GMP synthase [Escherichia coli O157:H7 str. TW14359]
 gi|256017345|ref|ZP_05431210.1| GMP synthase [Shigella sp. D9]
 gi|260845137|ref|YP_003222915.1| GMP synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856601|ref|YP_003230492.1| GMP synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869196|ref|YP_003235598.1| GMP synthetase [Escherichia coli O111:H- str. 11128]
 gi|261223061|ref|ZP_05937342.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259388|ref|ZP_05951921.1| GMP synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283728|ref|YP_003500546.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O55:H7 str.
           CB9615]
 gi|293410918|ref|ZP_06654494.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293446860|ref|ZP_06663282.1| GMP synthase [Escherichia coli B088]
 gi|300817723|ref|ZP_07097938.1| GMP synthase protein [Escherichia coli MS 107-1]
 gi|300820823|ref|ZP_07100973.1| GMP synthase protein [Escherichia coli MS 119-7]
 gi|300903522|ref|ZP_07121446.1| GMP synthase protein [Escherichia coli MS 84-1]
 gi|300920661|ref|ZP_07137073.1| GMP synthase protein [Escherichia coli MS 115-1]
 gi|300981944|ref|ZP_07175812.1| GMP synthase protein [Escherichia coli MS 45-1]
 gi|300998017|ref|ZP_07181920.1| GMP synthase protein [Escherichia coli MS 200-1]
 gi|301047135|ref|ZP_07194232.1| GMP synthase protein [Escherichia coli MS 185-1]
 gi|301302864|ref|ZP_07208992.1| GMP synthase protein [Escherichia coli MS 124-1]
 gi|306814426|ref|ZP_07448588.1| GMP synthase [Escherichia coli NC101]
 gi|307312498|ref|ZP_07592131.1| GMP synthase, large subunit [Escherichia coli W]
 gi|309794446|ref|ZP_07688869.1| GMP synthase protein [Escherichia coli MS 145-7]
 gi|312973252|ref|ZP_07787424.1| GMP synthase [Escherichia coli 1827-70]
 gi|331658647|ref|ZP_08359591.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA206]
 gi|331664067|ref|ZP_08364977.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA143]
 gi|331669253|ref|ZP_08370101.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA271]
 gi|331678497|ref|ZP_08379172.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H591]
 gi|331684152|ref|ZP_08384748.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H299]
 gi|54037231|sp|P64295|GUAA_ECO57 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041332|sp|P64294|GUAA_ECOL6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122422916|sp|Q1R8M9|GUAA_ECOUT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122958139|sp|Q0TEY1|GUAA_ECOL5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738441|sp|B7MHY8|GUAA_ECO45 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738442|sp|B5Z0X6|GUAA_ECO5E RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738443|sp|B7NQV3|GUAA_ECO7I RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738444|sp|B7M7L1|GUAA_ECO8A RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738446|sp|A8A313|GUAA_ECOHS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738447|sp|A1AE43|GUAA_ECOK1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738448|sp|B1IWF4|GUAA_ECOLC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738450|sp|B6I579|GUAA_ECOSE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738451|sp|B1LNF9|GUAA_ECOSM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800096|sp|B7LCP7|GUAA_ECO55 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800097|sp|B7MYD5|GUAA_ECO81 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|26109274|gb|AAN81476.1|AE016764_158 GMP synthase (glutamine-hydrolyzing) [Escherichia coli CFT073]
 gi|13362839|dbj|BAB36792.1| GMP synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|91073404|gb|ABE08285.1| glutamine-hydrolyzing amonia dependent GMP synthetase [Escherichia
           coli UTI89]
 gi|110344261|gb|ABG70498.1| GMP synthase [Escherichia coli 536]
 gi|115513858|gb|ABJ01933.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli APEC O1]
 gi|157067662|gb|ABV06917.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli HS]
 gi|169754138|gb|ACA76837.1| GMP synthase, large subunit [Escherichia coli ATCC 8739]
 gi|170521199|gb|ACB19377.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli SMS-3-5]
 gi|187770635|gb|EDU34479.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017013|gb|EDU55135.1| GMP synthase [Escherichia coli O157:H7 str. EC4113]
 gi|188491634|gb|EDU66737.1| GMP synthetase [Escherichia coli 53638]
 gi|189003283|gb|EDU72269.1| GMP synthase [Escherichia coli O157:H7 str. EC4076]
 gi|189356551|gb|EDU74970.1| GMP synthase [Escherichia coli O157:H7 str. EC4401]
 gi|189362273|gb|EDU80692.1| GMP synthase [Escherichia coli O157:H7 str. EC4486]
 gi|189368390|gb|EDU86806.1| GMP synthase [Escherichia coli O157:H7 str. EC4501]
 gi|189372276|gb|EDU90692.1| GMP synthase [Escherichia coli O157:H7 str. EC869]
 gi|189378613|gb|EDU97029.1| GMP synthase [Escherichia coli O157:H7 str. EC508]
 gi|190902261|gb|EDV62001.1| GMP synthase [Escherichia coli B7A]
 gi|190906762|gb|EDV66366.1| GMP synthase [Escherichia coli F11]
 gi|192927624|gb|EDV82240.1| GMP synthase [Escherichia coli E22]
 gi|192958271|gb|EDV88711.1| GMP synthase [Escherichia coli E110019]
 gi|194414657|gb|EDX30929.1| GMP synthase [Escherichia coli B171]
 gi|194419603|gb|EDX35683.1| GMP synthase [Shigella dysenteriae 1012]
 gi|208728135|gb|EDZ77736.1| GMP synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208733715|gb|EDZ82402.1| GMP synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208739960|gb|EDZ87642.1| GMP synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159016|gb|ACI36449.1| GMP synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209763448|gb|ACI80036.1| GMP synthetase [Escherichia coli]
 gi|209763450|gb|ACI80037.1| GMP synthetase [Escherichia coli]
 gi|209763452|gb|ACI80038.1| GMP synthetase [Escherichia coli]
 gi|209763454|gb|ACI80039.1| GMP synthetase [Escherichia coli]
 gi|209763456|gb|ACI80040.1| GMP synthetase [Escherichia coli]
 gi|209913243|dbj|BAG78317.1| GMP synthase [Escherichia coli SE11]
 gi|217320065|gb|EEC28490.1| GMP synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218352866|emb|CAU98665.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           55989]
 gi|218361800|emb|CAQ99399.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli IAI1]
 gi|218366200|emb|CAR03946.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli S88]
 gi|218371000|emb|CAR18828.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           IAI39]
 gi|218428186|emb|CAR09101.2| GMP synthetase (glutamine aminotransferase) [Escherichia coli ED1a]
 gi|222034215|emb|CAP76956.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli LF82]
 gi|226901380|gb|EEH87639.1| bifunctional GMP synthase/glutamine amidotransferase [Escherichia
           sp. 3_2_53FAA]
 gi|227835889|gb|EEJ46355.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli 83972]
 gi|254593853|gb|ACT73214.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755250|dbj|BAI26752.1| GMP synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760284|dbj|BAI31781.1| GMP synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765552|dbj|BAI37047.1| GMP synthetase [Escherichia coli O111:H- str. 11128]
 gi|281179558|dbj|BAI55888.1| GMP synthase [Escherichia coli SE15]
 gi|284922454|emb|CBG35541.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 042]
 gi|290763601|gb|ADD57562.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323690|gb|EFE63118.1| GMP synthase [Escherichia coli B088]
 gi|291471386|gb|EFF13870.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493180|gb|ADE91936.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli IHE3034]
 gi|300300957|gb|EFJ57342.1| GMP synthase protein [Escherichia coli MS 185-1]
 gi|300304067|gb|EFJ58587.1| GMP synthase protein [Escherichia coli MS 200-1]
 gi|300404474|gb|EFJ88012.1| GMP synthase protein [Escherichia coli MS 84-1]
 gi|300408890|gb|EFJ92428.1| GMP synthase protein [Escherichia coli MS 45-1]
 gi|300412356|gb|EFJ95666.1| GMP synthase protein [Escherichia coli MS 115-1]
 gi|300526576|gb|EFK47645.1| GMP synthase protein [Escherichia coli MS 119-7]
 gi|300529711|gb|EFK50773.1| GMP synthase protein [Escherichia coli MS 107-1]
 gi|300841799|gb|EFK69559.1| GMP synthase protein [Escherichia coli MS 124-1]
 gi|305851820|gb|EFM52272.1| GMP synthase [Escherichia coli NC101]
 gi|306907421|gb|EFN37925.1| GMP synthase, large subunit [Escherichia coli W]
 gi|307554527|gb|ADN47302.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli ABU 83972]
 gi|307625940|gb|ADN70244.1| GMP synthase [Escherichia coli UM146]
 gi|308121902|gb|EFO59164.1| GMP synthase protein [Escherichia coli MS 145-7]
 gi|310331847|gb|EFP99082.1| GMP synthase [Escherichia coli 1827-70]
 gi|312947081|gb|ADR27908.1| GMP synthase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061826|gb|ADT76153.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli W]
 gi|315256527|gb|EFU36495.1| GMP synthase protein [Escherichia coli MS 85-1]
 gi|315288084|gb|EFU47484.1| GMP synthase protein [Escherichia coli MS 110-3]
 gi|315292429|gb|EFU51781.1| GMP synthase protein [Escherichia coli MS 153-1]
 gi|315300464|gb|EFU59694.1| GMP synthase protein [Escherichia coli MS 16-3]
 gi|320180497|gb|EFW55428.1| GMP synthase [Shigella boydii ATCC 9905]
 gi|320188840|gb|EFW63499.1| GMP synthase [Escherichia coli O157:H7 str. EC1212]
 gi|320196341|gb|EFW70965.1| GMP synthase [Escherichia coli WV_060327]
 gi|320640851|gb|EFX10339.1| GMP synthase [Escherichia coli O157:H7 str. G5101]
 gi|320646294|gb|EFX15221.1| GMP synthase [Escherichia coli O157:H- str. 493-89]
 gi|320651799|gb|EFX20179.1| GMP synthase [Escherichia coli O157:H- str. H 2687]
 gi|320657185|gb|EFX24994.1| GMP synthase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662791|gb|EFX30123.1| GMP synthase [Escherichia coli O55:H7 str. USDA 5905]
 gi|323156160|gb|EFZ42319.1| GMP synthase [Escherichia coli EPECa14]
 gi|323170222|gb|EFZ55875.1| GMP synthase [Escherichia coli LT-68]
 gi|323177370|gb|EFZ62958.1| GMP synthase [Escherichia coli 1180]
 gi|323184432|gb|EFZ69807.1| GMP synthase [Escherichia coli 1357]
 gi|323188153|gb|EFZ73446.1| GMP synthase [Escherichia coli RN587/1]
 gi|323377593|gb|ADX49861.1| GMP synthase, large subunit [Escherichia coli KO11]
 gi|323941231|gb|EGB37416.1| GMP synthase domain-containing protein [Escherichia coli E482]
 gi|323944729|gb|EGB40796.1| GMP synthase domain-containing protein [Escherichia coli H120]
 gi|323949164|gb|EGB45055.1| GMP synthase domain-containing protein [Escherichia coli H252]
 gi|323955745|gb|EGB51503.1| GMP synthase domain-containing protein [Escherichia coli H263]
 gi|324008512|gb|EGB77731.1| GMP synthase protein [Escherichia coli MS 57-2]
 gi|324020067|gb|EGB89286.1| GMP synthase protein [Escherichia coli MS 117-3]
 gi|324118149|gb|EGC12046.1| GMP synthase domain-containing protein [Escherichia coli E1167]
 gi|326340305|gb|EGD64109.1| GMP synthase [Escherichia coli O157:H7 str. 1125]
 gi|326344989|gb|EGD68733.1| GMP synthase [Escherichia coli O157:H7 str. 1044]
 gi|331054312|gb|EGI26339.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA206]
 gi|331059866|gb|EGI31843.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA143]
 gi|331064447|gb|EGI36358.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA271]
 gi|331074957|gb|EGI46277.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H591]
 gi|331079104|gb|EGI50306.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H299]
 gi|332089774|gb|EGI94875.1| GMP synthase [Shigella dysenteriae 155-74]
 gi|332100692|gb|EGJ04038.1| glutamine-hydrolyzing amonia dependent GMP synthetase [Shigella sp.
           D9]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|293369968|ref|ZP_06616535.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634886|gb|EFF53408.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 435

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH-----------VNHGLMRKGESEDVAE 188

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
           V  + +  +    D        V   F +  A  E P     +     ++        R+
Sbjct: 189 VFSNQLKANLVYVD--------VTDRFLNKLAGVEDPEQKRKIIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +     L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFQLVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGLELGLP 304


>gi|332087954|gb|EGI93079.1| GMP synthase [Shigella boydii 5216-82]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|323702327|ref|ZP_08113992.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532633|gb|EGB22507.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 270

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 86/241 (35%), Gaps = 55/241 (22%)

Query: 14  LDKNPKDMR--------VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           LD+  K++R        V++A SGGVDS+++  +L  +          L +   A     
Sbjct: 4   LDEKLKNLREKIRGYGSVLIAFSGGVDSTLLLKILAEE----------LPSRTLAVTAIS 53

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                +++  A+++   + V H + +  E      +            P  C  C + ++
Sbjct: 54  DTFTLEEIERAQKLAKELGVEHLLIESTEMTDQRFVS---------NPPERCYYC-KHIR 103

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           FS L  + R  G + +  G          DD    R   + ++    +S           
Sbjct: 104 FSKLKEIARDRGIENIVDG-------SNIDDLADFRPGTKAVEELGVKS----------- 145

Query: 186 CDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
                PL +  + K  VR+L+R +GL   +       C   +  Y + + +        G
Sbjct: 146 -----PLQEVGLSKAEVRELSRRLGLPTWNVPAV--ACLASRIPYGETITKDKLLTIKAG 198

Query: 244 D 244
           +
Sbjct: 199 E 199


>gi|320200070|gb|EFW74659.1| GMP synthase [Escherichia coli EC4100B]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|82544956|ref|YP_408903.1| GMP synthase [Shigella boydii Sb227]
 gi|91206827|sp|Q31XY3|GUAA_SHIBS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81246367|gb|ABB67075.1| GMP synthetase [Shigella boydii Sb227]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|303254795|ref|ZP_07340895.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           BS455]
 gi|303259155|ref|ZP_07345133.1| argininosuccinate synthase [Streptococcus pneumoniae SP-BS293]
 gi|303260912|ref|ZP_07346861.1| argininosuccinate synthase [Streptococcus pneumoniae SP14-BS292]
 gi|303263239|ref|ZP_07349162.1| argininosuccinate synthase [Streptococcus pneumoniae BS397]
 gi|303267651|ref|ZP_07353487.1| argininosuccinate synthase [Streptococcus pneumoniae BS457]
 gi|303269997|ref|ZP_07355728.1| argininosuccinate synthase [Streptococcus pneumoniae BS458]
 gi|301801070|emb|CBW33737.1| putative argininosuccinate synthase (fragment) [Streptococcus
           pneumoniae INV200]
 gi|302598232|gb|EFL65278.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           BS455]
 gi|302637749|gb|EFL68235.1| argininosuccinate synthase [Streptococcus pneumoniae SP14-BS292]
 gi|302639573|gb|EFL70030.1| argininosuccinate synthase [Streptococcus pneumoniae SP-BS293]
 gi|302640473|gb|EFL70889.1| argininosuccinate synthase [Streptococcus pneumoniae BS458]
 gi|302642820|gb|EFL73131.1| argininosuccinate synthase [Streptococcus pneumoniae BS457]
 gi|302647012|gb|EFL77236.1| argininosuccinate synthase [Streptococcus pneumoniae BS397]
 gi|332077416|gb|EGI87877.1| arginosuccinate synthase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 139

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|91200058|emb|CAJ73100.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 272

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 78/218 (35%), Gaps = 55/218 (25%)

Query: 9   LNSLDLDKNPKDMR--------VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           ++S+D  +    +R        VVVA SGGVDSS+VA +     +DV+G          A
Sbjct: 1   MSSMDTKEKLNKLRNYAEALESVVVAFSGGVDSSLVAKVC----FDVLG------GKAMA 50

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVD 119
              +       +  +A ++   I +SH      E      I  F       E P   C  
Sbjct: 51  VTARSETYPAFEYEEATKIAKEIGISHMTIHTSELN----IKGF------AENPTNRCYF 100

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           C   + F  L  + R  G   +  G          D  + R  +    +L          
Sbjct: 101 CKSEL-FGKLKDIARAQGFKNVVDG------ANFDDTSEHRPGLEAAKELS--------- 144

Query: 180 TTQQQLCDLRFPLGDM--KKESVRDLAREMGLDIADKS 215
                   +R PL D+  +K  +R++++ + L   DK 
Sbjct: 145 --------VRSPLKDLGFRKSDIREISKYLLLSNWDKP 174


>gi|119386404|ref|YP_917459.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paracoccus denitrificans PD1222]
 gi|119376999|gb|ABL71763.1| GMP synthase (glutamine-hydrolyzing) [Paracoccus denitrificans
           PD1222]
          Length = 519

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 72/236 (30%), Gaps = 58/236 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RV+  +SGGVDSSV A L+    G  +  V                      + +A  V
Sbjct: 222 KRVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLNEAEEV 267

Query: 80  C----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                D  N+     D  E F      V  P       G+                    
Sbjct: 268 VTMFRDNYNIPLIHADESELFLSALEGVSDPEVKRKTIGKLF-----------IDVFQKY 316

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             ++ GA+ LA G      +          +  +           +    ++    L  P
Sbjct: 317 ASEIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEP 369

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           L ++ K+ VR L RE+GL            F+ +  +         G+A+   G+I
Sbjct: 370 LRELFKDEVRALGRELGLPEK---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|288932827|ref|YP_003436887.1| asparagine synthase [Ferroglobus placidus DSM 10642]
 gi|288895075|gb|ADC66612.1| asparagine synthase [Ferroglobus placidus DSM 10642]
          Length = 265

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 42/193 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVA SGGVDSS +A L      +V+ VT+                  +++ DA R+   
Sbjct: 19  VVVAFSGGVDSSTLAGLANELT-EVLAVTI-----------ISPTTPSREIRDAERIARE 66

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+ H   +  E      +           T   C  C R V  + L  +  + G + + 
Sbjct: 67  LNLKHRFHELNELEDENFVR---------NTEDRCYFCKRMV-LTSLKKIAEKEGYEAVF 116

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G           + +  R   R +    D  Y  +           F      KE +R+
Sbjct: 117 EGTNAS-------ELQGHRPGYRAVVELED-VYSPW---------AIF---GFTKEEIRE 156

Query: 203 LAREMGLDIADKS 215
           +A+  G    +K 
Sbjct: 157 IAKMKGYSFWNKP 169


>gi|167747226|ref|ZP_02419353.1| hypothetical protein ANACAC_01940 [Anaerostipes caccae DSM 14662]
 gi|167653204|gb|EDR97333.1| hypothetical protein ANACAC_01940 [Anaerostipes caccae DSM 14662]
          Length = 277

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 81/234 (34%), Gaps = 64/234 (27%)

Query: 23  VVVAMSGGVDSS-------VVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDV 73
           V +A SGGVDSS       + A   ++ G  V   T+  +L+ S  A             
Sbjct: 23  VALAFSGGVDSSLLLKLLCLAA---EKTGKKVAAFTMVTKLHPSGDA------------- 66

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSV 132
             A RV       H V   +E     ++            P   C  C R + +++LL  
Sbjct: 67  KIAERVAGEAGAVHRVIHVDELSHAGIMDN----------PENRCYLCKRYL-YTELLKS 115

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + LG   +  G          DD    R   R +               ++L  +  PL
Sbjct: 116 AKALGIQTVLEGTNA-------DDLNAYRPGIRAV---------------KELG-ILSPL 152

Query: 193 --GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
               M K  +R +A E G+ +A++  S   C   +  Y   +      +A EG+
Sbjct: 153 VQAGMTKADIRRMASEYGISVAERPASP--CLATRFPYGTRLSWEKMKMAEEGE 204


>gi|258593582|emb|CBE69923.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [NC10 bacterium 'Dutch sediment']
          Length = 510

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 72/205 (35%), Gaps = 52/205 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDSSVVA L+ R  G  +  V            RKG     +     + 
Sbjct: 213 DQRVLCALSGGVDSSVVALLVHRAIGPKLTCVF-----VDNGLLRKGEAAQVE-----QA 262

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
           + + + V     D  ERF      +I P               +  R +      +    
Sbjct: 263 MGEHLGVHLVSVDARERFLTRLKGIIDP---------------EEKRKIIGAEFIAVFEE 307

Query: 132 VTRQLG-ADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            +R+LG  D LA        I S    G     +                      +Q  
Sbjct: 308 ESRRLGRFDFLAQGTLYPDVIESVSVKGPSVTIKSHHNVGGLP-------------EQFD 354

Query: 187 D-LRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR+L RE+GL 
Sbjct: 355 FELLEPLRELFKDEVRELGRELGLP 379


>gi|225026501|ref|ZP_03715693.1| hypothetical protein EUBHAL_00750 [Eubacterium hallii DSM 3353]
 gi|224956189|gb|EEG37398.1| hypothetical protein EUBHAL_00750 [Eubacterium hallii DSM 3353]
          Length = 271

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 49/197 (24%)

Query: 23  VVVAMSGGVDSS--VVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARR 78
           V +A SGGVDS+  + AA  K   G  VI +T +            SC   + +  +A  
Sbjct: 23  VAIAFSGGVDSTFLLAAA--KEALGDKVIALTAK------------SCLFPERESGEAED 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  + V   V D  +    A              P  C  C + + F   L   ++   
Sbjct: 69  FCKNLGVEQIVLDLGDTELPAF---------KHNPPNRCYICKKGL-FEKFLQKAKEYQM 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A G        + D G  R  +             +     +          ++ K 
Sbjct: 119 SYVAEG------SNMDDLGDYRPGLQ-----------AITELGIKSPLRA----AELTKA 157

Query: 199 SVRDLAREMGLDIADKS 215
            +R+L+++MGL    K 
Sbjct: 158 EIRELSKQMGLPTWSKP 174


>gi|73669809|ref|YP_305824.1| NAD synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72396971|gb|AAZ71244.1| NH(3)-dependent NAD(+) synthetase [Methanosarcina barkeri str.
           Fusaro]
          Length = 265

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 46/192 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A L  +  G D V+G+ +           +      +D  DA+ + D
Sbjct: 37  VVGISGGIDSALAATLTVKALGKDKVLGIHM----------PESGLTPSEDSKDAKTLAD 86

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            + +     D        +I  F +S    E+       N    ++ S L     ++   
Sbjct: 87  WLGIEFQTIDIS-----GIISAFVASVPESESTDRLSMGNLKARIRMSLLYFHANRMNRM 141

Query: 140 VLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           V+ TG+     L Y    G     +                           P+G + K 
Sbjct: 142 VIGTGNKTEILLGYFTKYGDGGVDLE--------------------------PIGRLYKT 175

Query: 199 SVRDLAREMGLD 210
            V +L+R +G+ 
Sbjct: 176 EVWELSRRLGVP 187


>gi|324011211|gb|EGB80430.1| GMP synthase protein [Escherichia coli MS 60-1]
          Length = 520

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 222 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 268 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 324 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 376

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 377 DEVRKIGLELGLP 389


>gi|315304193|ref|ZP_07874562.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596]
 gi|313627428|gb|EFR96192.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596]
          Length = 404

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K                 
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVEAGYEVIACCLDVGEGKNLDFIKEKAITVGASQS------ 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V R+ GA  
Sbjct: 59  ------YTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARKEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|228923378|ref|ZP_04086666.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836332|gb|EEM81685.1| Argininosuccinate synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 411

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKDYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|161502333|ref|YP_001569445.1| GMP synthase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|226739715|sp|A9MHM5|GUAA_SALAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|160863680|gb|ABX20303.1| hypothetical protein SARI_00366 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|212225045|ref|YP_002308281.1| GMP synthase subunit B [Thermococcus onnurineus NA1]
 gi|212010002|gb|ACJ17384.1| GMP synthase [Thermococcus onnurineus NA1]
          Length = 307

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 33/199 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D + ++A+SGGVDSS  A L  R     IG   +L+     +           
Sbjct: 12  EIRETVGDGKAIIALSGGVDSSTAAVLAHRA----IGD--KLHAVFVNTGFLRKGEPEFV 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLS 131
           +   R   D + ++ +  D + RF  A           G T P         V       
Sbjct: 66  LKTFR---DELGMNLHYVDAQGRFFEA---------LKGVTDPEEKRKVIGRVFIEVFEE 113

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R++ A+ L  G      +      K                  +    ++    L  P
Sbjct: 114 VAREIDAEFLIQGTIAPDWIESKGKIKSHHN--------------VGGLPERLNLKLIEP 159

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+LA+E+GL 
Sbjct: 160 LRDLYKDEVRELAKELGLP 178


>gi|16761427|ref|NP_457044.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29140876|ref|NP_804218.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|167549472|ref|ZP_02343231.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168232074|ref|ZP_02657132.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243285|ref|ZP_02668217.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261453|ref|ZP_02683426.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168817736|ref|ZP_02829736.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450983|ref|YP_002046570.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470386|ref|ZP_03076370.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197247502|ref|YP_002147463.1| GMP synthase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|198245648|ref|YP_002216575.1| GMP synthase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205353612|ref|YP_002227413.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857920|ref|YP_002244571.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213160878|ref|ZP_03346588.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213425340|ref|ZP_03358090.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213622893|ref|ZP_03375676.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213852551|ref|ZP_03382083.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|238913647|ref|ZP_04657484.1| GMP synthase [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|289824931|ref|ZP_06544340.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|24211756|sp|Q8Z4Q3|GUAA_SALTI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739714|sp|B5F185|GUAA_SALA4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739716|sp|B5FR52|GUAA_SALDC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739717|sp|B5R569|GUAA_SALEP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739718|sp|B5RCX9|GUAA_SALG2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739719|sp|B4TD82|GUAA_SALHS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|25293822|pir||AD0820 GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503727|emb|CAD02712.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136501|gb|AAO68067.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|194409287|gb|ACF69506.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456750|gb|EDX45589.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197211205|gb|ACH48602.1| GMP synthetase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197940164|gb|ACH77497.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205273393|emb|CAR38365.1| GMP synthase [glutamine-hydrolyzing] [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325488|gb|EDZ13327.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333635|gb|EDZ20399.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337568|gb|EDZ24332.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344986|gb|EDZ31750.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349448|gb|EDZ36079.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709723|emb|CAR34073.1| GMP synthase [glutamine-hydrolyzing] [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320087003|emb|CBY96772.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322613748|gb|EFY10687.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619509|gb|EFY16385.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625014|gb|EFY21843.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629543|gb|EFY26319.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634026|gb|EFY30763.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635536|gb|EFY32247.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639889|gb|EFY36566.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644411|gb|EFY40952.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649136|gb|EFY45576.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655225|gb|EFY51534.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658272|gb|EFY54538.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664273|gb|EFY60470.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669440|gb|EFY65589.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673167|gb|EFY69273.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676559|gb|EFY72627.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683309|gb|EFY79323.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685805|gb|EFY81798.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323192519|gb|EFZ77748.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199564|gb|EFZ84655.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204661|gb|EFZ89659.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208109|gb|EFZ93054.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210167|gb|EFZ95068.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217034|gb|EGA01756.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219225|gb|EGA03721.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225454|gb|EGA09685.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229277|gb|EGA13401.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235408|gb|EGA19492.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237406|gb|EGA21469.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245160|gb|EGA29161.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248863|gb|EGA32789.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253151|gb|EGA36983.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255384|gb|EGA39152.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260592|gb|EGA44202.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266368|gb|EGA49856.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269801|gb|EGA53251.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624330|gb|EGE30675.1| GMP synthase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326628711|gb|EGE35054.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|229081882|ref|ZP_04214374.1| Argininosuccinate synthase [Bacillus cereus Rock4-2]
 gi|228701470|gb|EEL53964.1| Argininosuccinate synthase [Bacillus cereus Rock4-2]
          Length = 411

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F +   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KAISVGAIKSYMIDVQEEFASEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|169840170|ref|ZP_02873358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [candidate division TM7 single-cell isolate TM7a]
          Length = 48

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 5/45 (11%)

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD 284
           +V+  G++LG HNG++ YTIGQR+G+G+       GEP FVV  D
Sbjct: 1   MVNTQGKVLGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKD 45


>gi|260655872|ref|ZP_05861341.1| GMP synthase [Jonquetella anthropi E3_33 E1]
 gi|260629488|gb|EEX47682.1| GMP synthase [Jonquetella anthropi E3_33 E1]
          Length = 509

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 34/202 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+D    + +V+  +SGGVDSSV AAL+ R     IG      +  +            +
Sbjct: 207 DIDAKVGNDKVICGLSGGVDSSVAAALVSRA----IG------DRLECIFVNNGLLRQNE 256

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             +       + ++ +  D  E+F +A   VI P       GET                
Sbjct: 257 AEEVLESYKQMKLNVHYVDASEQFLSALTGVIEPERKRKIIGETF-----------IRVF 305

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R++ GA  L  G      +  G          +  D+ +   + +    Q    +L
Sbjct: 306 EEQARKIKGARWLLQGTLYPDVIESGA--------RKGADVIKSH-HNVGGLPQDMNMNL 356

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D+ K+ VR L R +GL 
Sbjct: 357 LEPLRDLFKDEVRALGRLLGLP 378


>gi|78224592|ref|YP_386339.1| thiamine biosynthesis protein [Geobacter metallireducens GS-15]
 gi|78195847|gb|ABB33614.1| Thiamine biosynthesis protein [Geobacter metallireducens GS-15]
          Length = 334

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 115/368 (31%), Gaps = 74/368 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV--YDAR 77
             + +  +SGG+DS++   ++   G +V  +          +    +C         +A 
Sbjct: 2   KRKALALLSGGLDSTLAVKVMLEQGIEVEAL--------NFTSPFCTCTGKNAGCKSEAI 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV +   +   V      +   V  P    +  G+   PC+DC   +          + G
Sbjct: 54  RVAEEFGIPIKVMHKGVDYLEVVRKP---KHGYGKGMNPCIDCRIFL-LRKAKEYLEESG 109

Query: 138 ADVLATGHYIRSRLY---------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ---- 184
           AD + TG  +  R           +  +      + RP+  +    +F     +Q+    
Sbjct: 110 ADFVITGEVLGQRPMSQRRHTLDIIERESGLAGRLLRPLSAK----HFEPTLPEQEGWVD 165

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
              L    G  +KE +  LA E  LD+ +       C + +  +   V+ +        +
Sbjct: 166 REKLLAIQGRSRKEQM-QLAEE--LDVKNYPCPAGGCLLTEVSFVSKVRDVFDHSDQ-LN 221

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304
           +       + RH     + +G R  + +   E                     L  H I 
Sbjct: 222 LRDFRLLKVARH-----FRVGPRTKVLIGRNEA-----------------ENELLSHNIQ 259

Query: 305 LRE--INWLGDGLFEDAVVDG-----FKCFVKI--RSSQDPVPV-----FVQRNDDGVYV 350
             E  + WL        ++        +   KI  R ++           V  +++ + V
Sbjct: 260 PGEATLRWLDGSSPLGVLMGVVDDALLETSAKILLRYTRAEAGAECRVKVVIDDNERIIV 319

Query: 351 ---DFEKS 355
              +F   
Sbjct: 320 VPNEFSDP 327


>gi|21226548|ref|NP_632470.1| NAD synthetase [Methanosarcina mazei Go1]
 gi|25090751|sp|Q8PZP6|NADE_METMA RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|20904820|gb|AAM30142.1| NAD(+) synthetase [Methanosarcina mazei Go1]
          Length = 256

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 44/192 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DS++ A L  +  G D V+G+ +           + S     D  DA  + 
Sbjct: 26  VVVGISGGIDSALTATLAVKALGKDRVLGIHM----------PESSLTPAVDSEDAEALA 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGA 138
           D + + +   D        +I  F ++    E+       N     + S L     +L  
Sbjct: 76  DWLGIEYRTIDIS-----GIISAFMAAVPESESADRLTKGNLKARTRMSLLYFHANRLNR 130

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V+ TG+     L                       Y  +      L     P+G + K 
Sbjct: 131 MVIGTGNKTEILLGY---------------------YTKYGDGGVDLE----PIGGLYKT 165

Query: 199 SVRDLAREMGLD 210
            V +L+  +G+ 
Sbjct: 166 GVWELSSRLGIP 177


>gi|237751996|ref|ZP_04582476.1| tRNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376563|gb|EEO26654.1| tRNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
          Length = 325

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   ++K  G DV+ + L +          G           R+  
Sbjct: 1   MKALALFSGGLDSLLAIKIIKDMGVDVLALHLNI----------GFGAKRDKSEILRQRL 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I V   + D  ++F + V+  F   +  G+   PC+DC+  + FS  L +    GA  
Sbjct: 51  DQIGVELKIVDIRKQFFDDVL--FKPKFGYGKYFNPCIDCHANM-FSHALGMLESEGASF 107

Query: 141 LATGHYIRSRLYVG 154
           + +G  +  R    
Sbjct: 108 VISGEVLGQRPKSQ 121


>gi|77462367|ref|YP_351871.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|77386785|gb|ABA77970.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides 2.4.1]
          Length = 514

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ MSGGVDS++ AAL K  G+ V+G TL +      + R                C  +
Sbjct: 76  VIGMSGGVDSALTAALFKAAGWHVMGHTLPIEQDPTETDRGIE------------ACAAL 123

Query: 84  NVSHYVFDYEERFRNAV-----IVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
            + H   D    +  A+     + P   S  + ETP      N    ++   L     +L
Sbjct: 124 GIEHRPLDLSGAYEAALAQLGELDPDLLS--SDETPARTRRGNLRARLRMMTLYDQAHRL 181

Query: 137 G 137
           G
Sbjct: 182 G 182


>gi|85860898|ref|YP_463100.1| GMP synthase [Syntrophus aciditrophicus SB]
 gi|85723989|gb|ABC78932.1| GMP synthase (glutamine-hydrolyzing) [Syntrophus aciditrophicus SB]
          Length = 510

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D +VV+ +SGGVDSSV A LL +  G  +  V +     R+    K      Q  +    
Sbjct: 212 DRKVVLGLSGGVDSSVAALLLHQAIGNQLTCVFVDNGLLRQGEAEKVRSLFKQHFHMNVR 271

Query: 76  -ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR     ++    + D     +  +I         G   +                  R
Sbjct: 272 FARAKAQFLDALKGIVD--PERKRKII---------GRVFVEV-----------FDQEAR 309

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++   D LA G      +           + +           +    ++    L  PL 
Sbjct: 310 KIRDVDYLAQGTLYPDVIESRSAFGGPSAVIKSHHN-------VGGLPRRMKLKLIEPLK 362

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L RE+GL 
Sbjct: 363 HLFKDEVRLLGRELGLS 379


>gi|200388214|ref|ZP_03214826.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605312|gb|EDZ03857.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 525

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|83942346|ref|ZP_00954807.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. EE-36]
 gi|83953565|ref|ZP_00962286.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. NAS-14.1]
 gi|83841510|gb|EAP80679.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. NAS-14.1]
 gi|83846439|gb|EAP84315.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. EE-36]
          Length = 520

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            RKG   A + V   R 
Sbjct: 222 DQKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDHGLLRKGE--AEEVVTMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             D  N+     D +E F            +  ET    +     +         +++G 
Sbjct: 274 --DNYNMPLIHADEQELFLGE-----LDGVSDPETKRKIIG---KLFIDVFQKHAKEVGD 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 324 ATFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR+L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 377 DEVRELGRELGLPPS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|223940293|ref|ZP_03632151.1| GMP synthase, large subunit [bacterium Ellin514]
 gi|223891060|gb|EEF57563.1| GMP synthase, large subunit [bacterium Ellin514]
          Length = 513

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 33/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AALL +  G  +  + +                 G++    + 
Sbjct: 215 NEKVILGLSGGVDSSVAAALLHKAIGNQLTCIFVNN-----------GLLRGREAKTVQE 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTR 134
           V      +     D    F   +             G+T +          F        
Sbjct: 264 VFGRHFKIKLQYEDASNLFLKRLKGVTDPERKRKIIGKTFIEV--------FEAATKRAG 315

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +  A  LA G      +           M +           +    ++    L  PL  
Sbjct: 316 K--AKFLAQGTLYPDIIESVPIAGNPAAMIKSHHN-------VGGLPKKMRFQLVEPLKS 366

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L  E+GL 
Sbjct: 367 LFKDEVRELGLELGLP 382


>gi|254509508|ref|ZP_05121575.1| GMP synthase [Rhodobacteraceae bacterium KLH11]
 gi|221533219|gb|EEE36207.1| GMP synthase [Rhodobacteraceae bacterium KLH11]
          Length = 519

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V +         ++  +        D   
Sbjct: 221 DKKVICGLSGGVDSSVAAILIHEAIGDQLTCVFV----DHGLLRKNEATEVVGMFRD--- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
                N+     D  E F                 P       R +     + V ++   
Sbjct: 274 ---NYNIRLIHADESELF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAD 318

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 319 TIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLIEPLR 371

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL      DS    F+ +  +         G+A+   G+I
Sbjct: 372 ELFKDEVRALGRELGLP-----DS----FIGRHPF------PGPGLAIRCPGEI 410


>gi|323143708|ref|ZP_08078378.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Succinatimonas hippei YIT 12066]
 gi|322416511|gb|EFY07175.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Succinatimonas hippei YIT 12066]
          Length = 522

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL +  G  +  V +                   +    + 
Sbjct: 225 DAKVLLGLSGGVDSSVTALLLHKAIGDKLTCVFVDN-----------GLLRLNEGQQVKD 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
           +   + ++    D  ERF +A+             G T                    R+
Sbjct: 274 MFADMGLNIVYADASERFLSALKGISDPEAKRKAIGHTF-----------IDVFADEARK 322

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D LA G      +        +  + +           +          L  PL +
Sbjct: 323 LEGVDFLAQGTIYPDVIESAAAKTGKAHVIKSHHN-------VGGLPDDLKFKLVEPLRE 375

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  ++GL 
Sbjct: 376 LFKDEVRRIGVKLGLP 391


>gi|262197371|ref|YP_003268580.1| Queuosine synthesis-like protein [Haliangium ochraceum DSM 14365]
 gi|262080718|gb|ACY16687.1| Queuosine synthesis-like protein [Haliangium ochraceum DSM 14365]
          Length = 296

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 75/216 (34%), Gaps = 57/216 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV+VA SGGVDS   A LLK      G D   +T                 A  +V DAR
Sbjct: 32  RVLVAFSGGVDS---AFLLKIASDELGADCHALT-----------CVSVTMARSEVEDAR 77

Query: 78  RVCDTINV--SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            + D + +   H+V +  E  +           A  +T L  V          L     Q
Sbjct: 78  ALGDELGLAERHHVVESNELEQPGFADNPTHRCALCKTELMDVA-------RPL---AEQ 127

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--G 193
           LG +V+A G        + D G  R  +    +                    R P+   
Sbjct: 128 LGVEVIAIG------TNIDDLGDFRPGIAAAKERA-----------------ARMPMVEA 164

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
            + K  +R L+R++GL   DK   Q  C   +  Y 
Sbjct: 165 GLSKADIRALSRQLGLRTWDKP--QLACLSSRFPYG 198


>gi|77918822|ref|YP_356637.1| GMP synthase [Pelobacter carbinolicus DSM 2380]
 gi|91206814|sp|Q3A590|GUAA_PELCD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77544905|gb|ABA88467.1| GMP synthase (glutamine-hydrolyzing) [Pelobacter carbinolicus DSM
           2380]
          Length = 520

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSV AAL++R  G  ++ V     ++      +G           R   
Sbjct: 224 RVILGLSGGVDSSVAAALIQRAIGDQLVCVF---VDNGLLRLDEGDQVM-------RTFA 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TRQ 135
             + V+    + ++RF  A          AGE+     +  R +  +  + +        
Sbjct: 274 QNMGVNVIRVNAQDRFMTA---------LAGES---DPERKRKIIGNLFVEIFEEESANI 321

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +    +           +    +     L  PL ++
Sbjct: 322 EDATWLAQGTIYPDVIESAGAKTGKAHNIKSHHN-------VGGLPEHMKLKLLEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 375 FKDEVRAIGEELGLP 389


>gi|20092334|ref|NP_618409.1| NAD synthetase [Methanosarcina acetivorans C2A]
 gi|25090757|sp|Q8TK88|NADE_METAC RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|19917581|gb|AAM06889.1| NAD+ synthetase [Methanosarcina acetivorans C2A]
          Length = 256

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 44/191 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A L     G + V+G+ +           + S     D  DA+ + D
Sbjct: 27  VVGISGGIDSALTATLTVEALGKERVLGLHM----------PESSLTPAVDSEDAKILAD 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            + + +   D        ++  F +S    E+       N     + S L     +L   
Sbjct: 77  WLGIEYRTIDIS-----GIVSAFMASIPESESSDRLTRGNLKARTRMSLLYFHANRLNRM 131

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TG+     L                       Y  +      L     P+G + K  
Sbjct: 132 VVGTGNKTEILLGY---------------------YTKYGDGGVDLE----PIGGIYKTE 166

Query: 200 VRDLAREMGLD 210
           V +L+R +G+ 
Sbjct: 167 VWELSRRLGIP 177


>gi|299133665|ref|ZP_07026859.1| GMP synthase, large subunit [Afipia sp. 1NLS2]
 gi|298591501|gb|EFI51702.1| GMP synthase, large subunit [Afipia sp. 1NLS2]
          Length = 531

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 65/201 (32%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDS+V A L+    G  +  V                      + +A  
Sbjct: 233 QGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVF--------------VDHGLLRMAEAET 278

Query: 79  VCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V D      N+     D  + F             AG T     +  R +     + V  
Sbjct: 279 VVDLFRHHYNIPLVHVDASKTFLGE---------LAGVT---DPEAKRKIIGKLFIDVFD 326

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +++ GAD LA G      +          +  +           +     +    L 
Sbjct: 327 EEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMKMKLV 379

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L RE+GL 
Sbjct: 380 EPLRELFKDEVRALGRELGLP 400


>gi|153870888|ref|ZP_02000191.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Beggiatoa sp. PS]
 gi|152072646|gb|EDN69809.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Beggiatoa sp. PS]
          Length = 533

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 33/200 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL R  G  +I V      L+LY + +              
Sbjct: 227 DNKVLLALSGGVDSSVVAALLHRAIGKQLICVFVDNGLLRLYEAEQVITTFT-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                    I +     D E +F  A++            G   +   +       S   
Sbjct: 279 -------KHIGLRVRCVDAEAQFLKALVGITDPEQKRKMIGNLFIEIFEQESEQIHSQ-- 329

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++       LA G      +        +  + +           +    ++    L  
Sbjct: 330 ELSLSTEKKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEKMNLKLLE 382

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 383 PLRELFKDEVRKIGIELGLP 402


>gi|254448865|ref|ZP_05062321.1| GMP synthase [gamma proteobacterium HTCC5015]
 gi|198261555|gb|EDY85844.1| GMP synthase [gamma proteobacterium HTCC5015]
          Length = 525

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAA+L +  G  +  V                     D   A    +
Sbjct: 230 VILGLSGGVDSSVVAAMLHKAIGDQLTCVF---------VDNGLLRLDEGDQVMATFAAN 280

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140
            + +     D E+RF  A+                 +  N  +          +L  AD 
Sbjct: 281 -MGIRVIRVDAEDRFLTALKGEDDPEKKRK------IIGNLFI--DIFEEEASKLTTADW 331

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +     L  PL ++ K+ V
Sbjct: 332 LAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEDMKLKLVEPLRELFKDEV 384

Query: 201 RDLAREMGLD 210
           R +  E+GL 
Sbjct: 385 RKIGVELGLP 394


>gi|229013835|ref|ZP_04170963.1| Argininosuccinate synthase [Bacillus mycoides DSM 2048]
 gi|228747504|gb|EEL97379.1| Argininosuccinate synthase [Bacillus mycoides DSM 2048]
          Length = 411

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E + N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GASAVAHG 126


>gi|229062317|ref|ZP_04199637.1| Argininosuccinate synthase [Bacillus cereus AH603]
 gi|228716980|gb|EEL68662.1| Argininosuccinate synthase [Bacillus cereus AH603]
          Length = 411

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E + N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GASAVAHG 126


>gi|229135467|ref|ZP_04264254.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST196]
 gi|228648028|gb|EEL04076.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST196]
          Length = 411

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E + N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GASAVAHG 126


>gi|229169357|ref|ZP_04297067.1| Argininosuccinate synthase [Bacillus cereus AH621]
 gi|228614120|gb|EEK71235.1| Argininosuccinate synthase [Bacillus cereus AH621]
          Length = 411

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E + N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GASAVAHG 126


>gi|163942362|ref|YP_001647246.1| argininosuccinate synthase [Bacillus weihenstephanensis KBAB4]
 gi|229889861|sp|A9VKE1|ASSY_BACWK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|163864559|gb|ABY45618.1| Argininosuccinate synthase [Bacillus weihenstephanensis KBAB4]
          Length = 401

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 2   EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E + N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 49  KALSVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 108

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 109 GASAVAHG 116


>gi|157165563|ref|YP_001466326.1| hypothetical protein CCC13826_1003 [Campylobacter concisus 13826]
 gi|112800843|gb|EAT98187.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 257

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 45/192 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDSS    LL +   DV+G       +  A   K    + +++ +A       
Sbjct: 18  AVAFSGGVDSS----LLLKVAADVLG------ENALALTVKSPYMSLREIDEAVEFTKFY 67

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H +      F   ++               C  C + V FS L++   +LG   LA 
Sbjct: 68  GIRHEI------FEVGIVD----EIKLNPQ-NRCYLCKKAV-FSRLIARANELGFTNLAD 115

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G          D G+ R  +                  +++L  +  PL +++K  +R+L
Sbjct: 116 G------TNKDDLGEYRPGLKA----------------KEELS-VLSPLINLRKFEIREL 152

Query: 204 AREMGLDIADKS 215
           +RE+ L  A+K 
Sbjct: 153 SRELNLSTAEKP 164


>gi|95930425|ref|ZP_01313161.1| GMP synthase [Desulfuromonas acetoxidans DSM 684]
 gi|95133465|gb|EAT15128.1| GMP synthase [Desulfuromonas acetoxidans DSM 684]
          Length = 519

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV AAL+ R  G  +  V     ++      +G               
Sbjct: 223 KVILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDNGLLRLNEGDQVMSTF-------A 272

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----- 135
             + V     D E+RF  A          AGET     +  R +     + +  +     
Sbjct: 273 QNLGVKVIRVDAEDRFLTA---------LAGET---DPEKKRKIIGGLFVDIFEEESNKL 320

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +    +           +          L  PL ++
Sbjct: 321 TDAKWLAQGTIYPDVIESAGAKTGKAHNIKSHHN-------VGGLPDYMKLQLLEPLREL 373

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 374 FKDEVRTVGEELGLP 388


>gi|291618401|ref|YP_003521143.1| GuaA [Pantoea ananatis LMG 20103]
 gi|291153431|gb|ADD78015.1| GuaA [Pantoea ananatis LMG 20103]
 gi|327394793|dbj|BAK12215.1| GMP synthase [glutamine-hydrolyzing] GuaA [Pantoea ananatis
           AJ13355]
          Length = 526

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++ +SGGVDSSV A LL R  G ++  V      L+L  + +     G        
Sbjct: 228 NDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFG-------- 279

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  D   ++    D E RF +A          AGE      +  R +     + V 
Sbjct: 280 -------DHFGLNIVHVDGEARFLDA---------LAGEN---DPEAKRKIIGRVFVEVF 320

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +L     LA G      +        +  + +           +    ++    L
Sbjct: 321 DEQALRLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGL 373

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 374 VEPLRELFKDEVRKIGLELGLP 395


>gi|15803031|ref|NP_289061.1| GMP synthase [Escherichia coli O157:H7 EDL933]
 gi|12516899|gb|AAG57618.1|AE005480_5 GMP synthetase (glutamine-hydrolyzing) [Escherichia coli O157:H7
           str. EDL933]
          Length = 525

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEB 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|187931657|ref|YP_001891641.1| GMP synthase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|226739622|sp|B2SGK4|GUAA_FRATM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187712566|gb|ACD30863.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 516

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 47/201 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAA+L +  G  +  +      L+L    +                
Sbjct: 220 KVILGLSGGVDSSVVAAILHQAIGDQLTCIFVDTGLLRLNEDDQVM-------------- 265

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            +   + ++++    + + RF +A           G     C    +      L      
Sbjct: 266 -QVFAEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFD 311

Query: 131 -SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +   A  LA G      +    + + +  + +           +    ++    L 
Sbjct: 312 EEAAKIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLL 364

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L   +GL 
Sbjct: 365 EPLRELFKDEVRKLGLGLGLP 385


>gi|148990571|ref|ZP_01821693.1| argininosuccinate synthase [Streptococcus pneumoniae SP6-BS73]
 gi|149010975|ref|ZP_01832280.1| argininosuccinate synthase [Streptococcus pneumoniae SP19-BS75]
 gi|225860148|ref|YP_002741657.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229082|ref|ZP_06962763.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255703|ref|ZP_06979289.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|147764611|gb|EDK71541.1| argininosuccinate synthase [Streptococcus pneumoniae SP19-BS75]
 gi|147924188|gb|EDK75289.1| argininosuccinate synthase [Streptococcus pneumoniae SP6-BS73]
 gi|225727953|gb|ACO23804.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327390521|gb|EGE88861.1| arginosuccinate synthase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 139

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|258512082|ref|YP_003185516.1| NAD+ synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478808|gb|ACV59127.1| NAD+ synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 283

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V  +SGG+DS++ A L     G D V  V +                  Q + DA +
Sbjct: 34  QKAVFGLSGGIDSALTAFLAAEALGRDRVHAVLM-----------PYRTSNPQSLEDALK 82

Query: 79  VCDTINVSHYVFDY---EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V + + + H + D     + +   V          G         NR           R+
Sbjct: 83  VVEALGIPHTIIDITAPVDAYFEQV------DRVLGYEANALRRGNRM---------ARE 127

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                L       + L +G   K   ++              + T    +     P+GD+
Sbjct: 128 RMVT-LYDLSAAMNALVLGTSNKTELLL-------------GYGTQFGDMASALNPIGDL 173

Query: 196 KKESVRDLAREMGLD 210
            K  VR LA  +G+ 
Sbjct: 174 YKCQVRQLAAHLGVP 188


>gi|16765830|ref|NP_461445.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|24211758|sp|Q8ZN60|GUAA_SALTY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|16421053|gb|AAL21404.1| GMP synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
          Length = 525

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---ERFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|298376303|ref|ZP_06986259.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19]
 gi|298267340|gb|EFI08997.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19]
          Length = 435

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG      +               +  D   V
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKA----IG------DKLVCVHVNHGLMRKGESEDVVEV 189

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + +N +    D  +RF N +                 +     ++        R+L G
Sbjct: 190 FKNQLNANLVYVDATDRFLNKLADVEDPEQKRK------IIGGEFIRV--FEEEARKLDG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G +   M +           +    +    +L  PL  + K
Sbjct: 242 IDFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGVELGLP 304


>gi|294101584|ref|YP_003553442.1| GMP synthase, large subunit [Aminobacterium colombiense DSM 12261]
 gi|293616564|gb|ADE56718.1| GMP synthase, large subunit [Aminobacterium colombiense DSM 12261]
          Length = 510

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 39/205 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +  ++ RV+  +SGGVDS+V A L  +  G  +  + +                   
Sbjct: 207 DVQQKTENARVICGLSGGVDSTVAAVLTSKAIGDRLECIFVNN--------------GLL 252

Query: 72  DVYDARRVCD---TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
              +A RV +    ++++ +  D   RF +A   VI P       GET +   +      
Sbjct: 253 RHREAERVLEKYKQLDLNVHYVDASNRFLDALKGVIDPEQKRKIIGETFIRVFEA----- 307

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                   +   A+ L  G      +  G  GK   ++    +        +    +   
Sbjct: 308 -----EAAKIHNAEWLLQGTLYPDVIESGHKGKGASVIKSHHN--------VGGLPEDMK 354

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D+ K+ VR +   +G+ 
Sbjct: 355 LKVLEPLRDLFKDEVRTIGALLGVP 379


>gi|194445647|ref|YP_002041769.1| GMP synthase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|226739720|sp|B4T0N7|GUAA_SALNS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194404310|gb|ACF64532.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 525

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---ERFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|56412608|ref|YP_149683.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|62181078|ref|YP_217495.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161612736|ref|YP_001586701.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           B str. SPB7]
 gi|167991815|ref|ZP_02572914.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168466744|ref|ZP_02700598.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197265595|ref|ZP_03165669.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361543|ref|YP_002141179.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|204929457|ref|ZP_03220531.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224582954|ref|YP_002636752.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|75481714|sp|Q57LJ8|GUAA_SALCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81360644|sp|Q5PI52|GUAA_SALPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739721|sp|A9N218|GUAA_SALPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739722|sp|B5BAZ5|GUAA_SALPK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800113|sp|C0PYP4|GUAA_SALPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56126865|gb|AAV76371.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128711|gb|AAX66414.1| GMP synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362100|gb|ABX65868.1| hypothetical protein SPAB_00435 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195630797|gb|EDX49389.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093019|emb|CAR58455.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197243850|gb|EDY26470.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204321176|gb|EDZ06376.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205329878|gb|EDZ16642.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|224467481|gb|ACN45311.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261247707|emb|CBG25534.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994622|gb|ACY89507.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301159060|emb|CBW18573.1| GMP synthase [glutamine-hydrolyzing] [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913496|dbj|BAJ37470.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222790|gb|EFX47861.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322715563|gb|EFZ07134.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130838|gb|ADX18268.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 525

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---ERFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|157415853|ref|YP_001483109.1| hypothetical protein C8J_1535 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386817|gb|ABV53132.1| hypothetical protein C8J_1535 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748489|gb|ADN91759.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931678|gb|EFV10639.1| thiamine biosynthesis protein:ExsB [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 327

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMIGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R        R   M +   L  D+         + +C    PL    K   
Sbjct: 108 IITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL---TKPE- 155

Query: 201 R---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R                     +LA + GL+  +       C +         K+I   I
Sbjct: 156 REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLTLDN---FAKKIRDFI 210

Query: 240 ALEGDIVHLNGQIL--GRH 256
             + D+   + Q+L  GRH
Sbjct: 211 EFDKDMQVNDAQLLKYGRH 229


>gi|332140458|ref|YP_004426196.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
 gi|226738378|sp|B4RV80|GUAA_ALTMD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|327550480|gb|AEA97198.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 525

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV++ +SGGVDSSV A LL R  G ++  V      L+L  + +  +  G        
Sbjct: 227 DERVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEADQVMEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++    D E RF +    +  P     A G         N  V+     
Sbjct: 279 -------DHFGLNIIRVDAEGRFLDRLKGIEDPELKRKAIG---------NEFVRV--FD 320

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +        +  + +           +    +     L 
Sbjct: 321 EEASKLENAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPEDMELGLV 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 374 EPLRELFKDEVRKIGLELGLP 394


>gi|256841570|ref|ZP_05547077.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|256737413|gb|EEU50740.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
          Length = 435

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG      +               +  D   V
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKA----IG------DKLVCVHVNHGLMRKGESEDVVEV 189

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + +N +    D  +RF N +                 +     ++        R+L G
Sbjct: 190 FKNQLNANLVYVDATDRFLNKLADVEDPEQKRK------IIGGEFIRV--FEEEARKLDG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G +   M +           +    +    +L  PL  + K
Sbjct: 242 IDFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGVELGLP 304


>gi|238879556|gb|EEQ43194.1| argininosuccinate synthase [Candida albicans WO-1]
          Length = 416

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+VI   L                  +D  +A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FLANI------------GQEEDFEEAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F   V  P   S       Y  G +    V     +K     
Sbjct: 49  KALAIGATKFVVVDVRKEFVEKVCFPAIQSNAIYENVYLLGTSLARPVIAQAQIK----- 103

Query: 131 SVTRQLGADVLATG 144
            V  + G   ++ G
Sbjct: 104 -VAEENGCFAVSHG 116


>gi|23100584|ref|NP_694051.1| argininosuccinate synthase [Oceanobacillus iheyensis HTE831]
 gi|30172842|sp|Q8ELT8|ASSY_OCEIH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|22778817|dbj|BAC15085.1| argininosuccinate synthase [Oceanobacillus iheyensis HTE831]
          Length = 417

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 38/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    L+    YDVI V L                 G+D+   ++  
Sbjct: 5   KIVLAYSGGLDTSVAVKWLQDKYNYDVIAVAL-------------DVGEGKDLDFVKKKA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  +  YV D +  F    ++P   +    E   P +   +R +    L+ +  + GA
Sbjct: 52  LDVGAIKSYVIDAKNLFAEEYVLPALQANLLYEGKYPLISALSRPLISKILVDIAEEEGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
             +A G                    +  D  R    F           +  P+    M 
Sbjct: 112 VAVAHG-----------------CTGKGNDQVRFDVSFTALNPNL---KIVAPVREWAMS 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E   + A+  G+ I    DS
Sbjct: 152 REEEIEYAKSHGIPIPINLDS 172


>gi|150008446|ref|YP_001303189.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|255014181|ref|ZP_05286307.1| putative GMP synthase [Bacteroides sp. 2_1_7]
 gi|301309336|ref|ZP_07215278.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3]
 gi|149936870|gb|ABR43567.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|300832425|gb|EFK63053.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3]
          Length = 435

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG      +               +  D   V
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKA----IG------DKLVCVHVNHGLMRKGESEDVVEV 189

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + +N +    D  +RF N +                 +     ++        R+L G
Sbjct: 190 FKNQLNANLVYVDATDRFLNKLADVEDPEQKRK------IIGGEFIRV--FEEEARKLDG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G +   M +           +    +    +L  PL  + K
Sbjct: 242 IDFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGVELGLP 304


>gi|56421292|ref|YP_148610.1| argininosuccinate synthase [Geobacillus kaustophilus HTA426]
 gi|61211378|sp|Q5KW94|ASSY_GEOKA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56381134|dbj|BAD77042.1| argininosuccinate synthase(citrulline--aspartate ligase)
           [Geobacillus kaustophilus HTA426]
          Length = 406

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V+A SGG+D+SV    L+  GYDVI   L L               G+D+   +  
Sbjct: 3   NPKLVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFVKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  +  YV D ++ F N   +    + A  E   P V   +R +    L+ +    G
Sbjct: 50  ALKVGAMKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  +A G         G+D  R  +  + ++ + D    +    +               
Sbjct: 110 AVAVAHG-----CTGKGNDQVRFEVSIKALNPDLD---VIAPVREWSWSR---------- 151

Query: 198 ESVRDLAREMGLDIADKSDS 217
           E   + A++ G+ I    DS
Sbjct: 152 EEEIEYAKKHGIPIPVDLDS 171


>gi|29347829|ref|NP_811332.1| putative GMP synthase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572215|ref|ZP_04849619.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|44887958|sp|Q8A525|GUAA2_BACTN RecName: Full=Putative GMP synthase [glutamine-hydrolyzing] 2;
           AltName: Full=GMP synthetase 2; AltName: Full=Glutamine
           amidotransferase 2
 gi|29339731|gb|AAO77526.1| putative GMP synthase, glutamine-hydrolyzing [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838395|gb|EES66482.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 435

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGENLVCVH-----------VNHGLMRKGESEDVVE 188

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
           V  + +  +    D        V   F    A  E P     +     ++        R+
Sbjct: 189 VFSNQLKANLVYVD--------VTDRFLDKLAGVEDPEQKRKIIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +     L  PL  
Sbjct: 239 LDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFQLVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGLELGLP 304


>gi|157157765|ref|YP_001463830.1| GMP synthase [Escherichia coli E24377A]
 gi|300927130|ref|ZP_07142878.1| GMP synthase protein [Escherichia coli MS 182-1]
 gi|301330403|ref|ZP_07223044.1| GMP synthase protein [Escherichia coli MS 78-1]
 gi|226738440|sp|A7ZPV1|GUAA_ECO24 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157079795|gb|ABV19503.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli E24377A]
 gi|300416900|gb|EFK00211.1| GMP synthase protein [Escherichia coli MS 182-1]
 gi|300843613|gb|EFK71373.1| GMP synthase protein [Escherichia coli MS 78-1]
          Length = 525

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLSEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|330718658|ref|ZP_08313258.1| argininosuccinate synthase [Leuconostoc fallax KCTC 3537]
          Length = 417

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GYDVI V L                 G+D+   +    
Sbjct: 12  KLVLAYSGGLDTSVAIPWLKEKGYDVIAVVL------------DVGQHGKDMQMIQEKAL 59

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           T+  +   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A 
Sbjct: 60  TVGAIQSIVIDAKLEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENEAT 119

Query: 140 VLATG 144
            +A G
Sbjct: 120 TIAHG 124


>gi|296104181|ref|YP_003614327.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058640|gb|ADF63378.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 525

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVEGEQ---RFLDALAGVNDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|227891440|ref|ZP_04009245.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227866587|gb|EEJ74008.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 521

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           + +   +    + +   D +V++ +SGGVDSSVV  LL +  G  +  +           
Sbjct: 209 MDDFIDMQIQKIRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGNQLTSIF-----VDHGL 263

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            RKG          A +V D++     ++    D +ERF N +   F             
Sbjct: 264 LRKGE---------AEQVMDSLGGKFGLNIIKVDAKERFLNKLAGVFDPEKKRK------ 308

Query: 118 VDCNRTVK-FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           +  N  ++ F D     +  G + LA G      +  G D  +     +           
Sbjct: 309 IIGNEFIRVFDD--EAAKLEGIEFLAQGTLYTDIIESGTDTAQT---IKSHHN------- 356

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 VGGLPEDVQFKLIEPLNTLFKDEVRELGEKLGMP 390


>gi|213648807|ref|ZP_03378860.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 451

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 153 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 198

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 199 VMDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 254

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 255 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 307

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 308 DEVRKIGLELGLP 320


>gi|152993480|ref|YP_001359201.1| GMP synthase [Sulfurovum sp. NBC37-1]
 gi|226739756|sp|A6QBI5|GUAA_SULNB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|151425341|dbj|BAF72844.1| GMP synthase (glutamine-hydrolyzing) [Sulfurovum sp. NBC37-1]
          Length = 513

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 32/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V+  +SGGVDSSVVAA+L        +I V                     +    +
Sbjct: 216 EKKVLCGVSGGVDSSVVAAMLHEALPKEQLICVF-----------VDQGLLRKDEAEQVQ 264

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT--RQ 135
            +   +++     D ++ F  A          AG T           KF ++      + 
Sbjct: 265 DMFKLLDIPLITIDAKKEFMEA---------LAGVTDPEQKRKAIGEKFIEVFDKEAGKH 315

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G  + + +      K      +           +         +L  PL ++
Sbjct: 316 TDVSFLAQG-TLYTDVIESVSVKGPSKTIKSHHN-------VGGLPDWMTFELVEPLREI 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 368 FKDEVRKLGLELGLP 382


>gi|262383281|ref|ZP_06076417.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294179|gb|EEY82111.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 435

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG      +               +  D   V
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKA----IG------DKLVCVHVNHGLMRKGESEDVVEV 189

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + +N +    D  +RF N +                 +     ++        R+L G
Sbjct: 190 FKNQLNANLVYVDATDRFLNKLADVEDPEQKRK------IIGGEFIRV--FEEEARKLDG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G +   M +           +    +    +L  PL  + K
Sbjct: 242 IDFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGVELGLP 304


>gi|241957900|ref|XP_002421669.1| arginosuccinate synthase, putative [Candida dubliniensis CD36]
 gi|223645014|emb|CAX39607.1| arginosuccinate synthase, putative [Candida dubliniensis CD36]
          Length = 416

 Score = 64.8 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+VI   L                  +D  +A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FLANI------------GQEEDFEEAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F   V  P   S       Y  G +    V     +K     
Sbjct: 49  KALAIGATKFVVVDVRKEFVEKVCFPAIQSNAIYENVYLLGTSLARPVIAQAQIK----- 103

Query: 131 SVTRQLGADVLATG 144
            V  + G   ++ G
Sbjct: 104 -VAEENGCFAVSHG 116


>gi|139437102|ref|ZP_01771262.1| Hypothetical protein COLAER_00240 [Collinsella aerofaciens ATCC
           25986]
 gi|133776749|gb|EBA40569.1| Hypothetical protein COLAER_00240 [Collinsella aerofaciens ATCC
           25986]
          Length = 408

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +VV+A SGG+D+SV    L+     DV+ V              G+    +   DA++  
Sbjct: 5   KVVLAYSGGLDTSVCVKWLQDEKNLDVVCV-------------CGNVGQEEIGLDAKKQK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              + V    V D  + F +  +    ++ +  E   P +   +R +    L+ V  + G
Sbjct: 52  ALDLGVLDCQVLDLRDEFSDEFLTKAIAANSMYENKYPLLSALSRPLLAKKLVEVAHEFG 111

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 112 ATYVAHG 118


>gi|288958012|ref|YP_003448353.1| GMP synthase (glutamine-hydrolyzing) [Azospirillum sp. B510]
 gi|288910320|dbj|BAI71809.1| GMP synthase (glutamine-hydrolyzing) [Azospirillum sp. B510]
          Length = 522

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             +V+  +SGGVDSSV A L+    G  +  +      ++   S +              
Sbjct: 224 KGKVICGLSGGVDSSVAAVLIHEAIGDQLTCIFVDTGLMRAGESEEV------------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
              R   D  N+     +  + F             AG T     +  R +     + V 
Sbjct: 271 --VRLFRDHYNIPLVHREAADLFLGK---------LAGVT---DPEQKRKIIGGLFIEVF 316

Query: 133 ----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +  GA+ LA G      +          +  +           +    ++    L
Sbjct: 317 DEESAKVGGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKLKL 369

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL  A         F+ +  +         G+A+   G+I
Sbjct: 370 VEPLRELFKDEVRALGRELGLPPA---------FIGRHPF------PGPGLAIRVPGEI 413


>gi|170289597|ref|YP_001739835.1| PP-loop domain-containing protein [Thermotoga sp. RQ2]
 gi|170177100|gb|ACB10152.1| PP-loop domain protein [Thermotoga sp. RQ2]
          Length = 268

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 41/204 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               ++VV  SGGVDS+    LL +  Y+ +G   +      A          +++ +A+
Sbjct: 12  KSKKKLVVMFSGGVDST----LLAKLAYEALG---KN---AVALTIDSPVIPRKEIEEAK 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + + I + H   +  E     +I            P  C  C R ++ + + +  R+ G
Sbjct: 62  NLANLIGIRHEFIELNELKSRHLIE---------NPPDRCYLC-RKLRDNIVKNWARENG 111

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            DV+A G      L   D    R  +    +      +  F                  K
Sbjct: 112 FDVIADG------LNFSDLQDYRPGVKASTEDGIWHPFIDFEV---------------TK 150

Query: 198 ESVRDLAREMGLDIADKSDSQDIC 221
           E +R+ +R++GL   DK     +C
Sbjct: 151 EEIREYSRKLGLPTWDKPAMACLC 174


>gi|229099090|ref|ZP_04230024.1| Argininosuccinate synthase [Bacillus cereus Rock3-29]
 gi|229118120|ref|ZP_04247479.1| Argininosuccinate synthase [Bacillus cereus Rock1-3]
 gi|228665343|gb|EEL20826.1| Argininosuccinate synthase [Bacillus cereus Rock1-3]
 gi|228684318|gb|EEL38262.1| Argininosuccinate synthase [Bacillus cereus Rock3-29]
          Length = 411

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV    L+   YD+I + L L               G+D+   + 
Sbjct: 12  EKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              ++  +  Y+ D +E F N   +    ++   E   P V   +R +    L+ +  Q 
Sbjct: 59  KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAVQE 118

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 119 GATAVAHG 126


>gi|329297572|ref|ZP_08254908.1| GMP synthase [Plautia stali symbiont]
          Length = 526

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 228 EDRVILGLSGGVDSSVTAMLLHRAIGERLTCVFVDN--------------GLLRLNEAEQ 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A    P         V          +L  
Sbjct: 274 VMDMFG-DHFGLNIVHVAAE---GRFLDALAGENDPEAKRKIIGRVFVEVFDEEALKLTD 329

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 330 VKWLAQGTIYPDVIESAASTTGKAHVIKSHHN-------VGGLPKEMKMGLIEPLKELFK 382

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 383 DEVRKIGLELGLP 395


>gi|330007868|ref|ZP_08306090.1| GMP synthase domain protein [Klebsiella sp. MS 92-3]
 gi|328535280|gb|EGF61768.1| GMP synthase domain protein [Klebsiella sp. MS 92-3]
          Length = 543

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 245 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 290

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V +     H+  +            F  + A    P         V          +L  
Sbjct: 291 VMEMFG-DHFGLNIVHVEGEQ---RFLDALAGESDPEAKRKIIGRVFVEVFDEEALKLDD 346

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 347 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 399

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 400 DEVRKIGLELGLP 412


>gi|298387971|ref|ZP_06997519.1| GMP synthase, C- domain protein [Bacteroides sp. 1_1_14]
 gi|298259237|gb|EFI02113.1| GMP synthase, C- domain protein [Bacteroides sp. 1_1_14]
          Length = 435

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGENLVCVH-----------VNHGLMRKGESEDVVE 188

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
           V  + +  +    D        V   F    A  E P     +     ++        R+
Sbjct: 189 VFSNQLKANLVYVD--------VTDRFLDKLAGVEDPEQKRKIIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +     L  PL  
Sbjct: 239 LDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFQLVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGLELGLP 304


>gi|88603839|ref|YP_504017.1| NAD+ synthetase [Methanospirillum hungatei JF-1]
 gi|88189301|gb|ABD42298.1| NH(3)-dependent NAD(+) synthetase [Methanospirillum hungatei JF-1]
          Length = 245

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 45/201 (22%)

Query: 24  VVAMSGGVDSSVVAALLKR-DGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+V AAL  R  G D V G  L             +    +D  D R + +
Sbjct: 28  VIGLSGGIDSAVAAALCVRAAGSDMVQGFFL-----------PSAVTPSEDAADVRLLAE 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++++               I P    Y      +P    N  +   +L++ TR       
Sbjct: 77  SLHIPVMTIP---------IGPVIDQYRR----MPDFTENSYL-VGNLMARTRMTMLYYY 122

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A      +RL  G       ++      +     F       Q      P+  + K  V 
Sbjct: 123 AN---QMNRLVCGTSNYTEYLL--GYCTK-----FGDNAADVQ------PIMHLLKTQVW 166

Query: 202 DLAREMGLD--IADKSDSQDI 220
           DLAR +GL   + +K+ S  +
Sbjct: 167 DLARYLGLPQKVIEKTPSAGL 187


>gi|262040239|ref|ZP_06013490.1| GMP synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259042348|gb|EEW43368.1| GMP synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 525

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V +     H+  +            F  + A    P         V          +L  
Sbjct: 273 VMEMFG-DHFGLNIVHVEGEQ---RFLDALAGESDPEAKRKIIGRVFVEVFDEEALKLDD 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|195155452|ref|XP_002018618.1| GL25858 [Drosophila persimilis]
 gi|198476816|ref|XP_001357491.2| GA21637 [Drosophila pseudoobscura pseudoobscura]
 gi|194114771|gb|EDW36814.1| GL25858 [Drosophila persimilis]
 gi|198137863|gb|EAL34561.2| GA21637 [Drosophila pseudoobscura pseudoobscura]
          Length = 666

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSV AALL+R  Y   +I V +     RK    K             R 
Sbjct: 230 KVLLLVSGGVDSSVCAALLRRALYPNQIIAVHVDNGFMRKNESEK-----------VERS 278

Query: 80  CDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  ++
Sbjct: 279 LREIGIDLIVRKECYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFVKV 336

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC------D 187
             DV+A    ++    +   G  R  +            ++          +        
Sbjct: 337 TNDVVAF-LKLKPEEVMLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNAGR 395

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
           +  PL D  K+ VRDL  ++GL   +  + Q
Sbjct: 396 VVEPLCDFHKDEVRDLGNDLGLP-PELVERQ 425


>gi|313622926|gb|EFR93229.1| argininosuccinate synthase [Listeria innocua FSL J1-023]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L         + K      +   +      
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCL------DVGEGKNLDFIKEKAINVGASAS 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 59  ------YTIDAKEEFAENFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|241668495|ref|ZP_04756073.1| GMP synthase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877029|ref|ZP_05249739.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843050|gb|EET21464.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 516

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 39/206 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           ++ K     RV++ +SGGVDSSVVAA+L       IG  +T    ++      +G     
Sbjct: 211 EIKKQVGSDRVILGLSGGVDSSVVAAILHEA----IGDQLTCIFVDTGLLRLNEGDQVME 266

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                     + ++++    + + RF          +      P       +      L 
Sbjct: 267 VF-------AEHMDINVIRVNAKNRF--------LDALKGIGDPEE-----KRKIIGKLF 306

Query: 131 ------SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                    +   A  LA G      +    + + +  + +           +    ++ 
Sbjct: 307 VDIFDEEAAKIENAKWLAQGTIYSDVIESAGNSQSKAHVIKSHHN-------VGGLPKEM 359

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L   +GL 
Sbjct: 360 KLKLLEPLRELFKDEVRKLGLGLGLP 385


>gi|167627943|ref|YP_001678443.1| GMP synthase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|226738458|sp|B0U0B2|GUAA_FRAP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167597944|gb|ABZ87942.1| GMP synthase (glutamine-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 516

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 39/206 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           ++ K     RV++ +SGGVDSSVVAA+L       IG  +T    ++      +G     
Sbjct: 211 EIKKQVGSDRVILGLSGGVDSSVVAAILHEA----IGDQLTCIFVDTGLLRLNEGDQVME 266

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                     + ++++    + + RF          +      P       +      L 
Sbjct: 267 VF-------AEHMDINVIRVNAKNRF--------LDALKGIGDPEE-----KRKIIGKLF 306

Query: 131 ------SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                    +   A  LA G      +    + + +  + +           +    ++ 
Sbjct: 307 VDIFDEEAAKIENAKWLAQGTIYSDVIESAGNSQSKAHVIKSHHN-------VGGLPKEM 359

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L   +GL 
Sbjct: 360 KLKLLEPLRELFKDEVRKLGLGLGLP 385


>gi|159044136|ref|YP_001532930.1| GMP synthase [Dinoroseobacter shibae DFL 12]
 gi|226738439|sp|A8LKW5|GUAA_DINSH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157911896|gb|ABV93329.1| GMP synthase [Dinoroseobacter shibae DFL 12]
          Length = 520

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 78/238 (32%), Gaps = 60/238 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+    G  +  V     +     K +           A+ 
Sbjct: 222 DGKVICALSGGVDSSVAAVLIHEAIGEQLTCVF---VDHGLLRKNE-----------AQE 267

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--- 131
           V     +  N+     D  E F             +        +  R +     +    
Sbjct: 268 VVTMFREHYNLPLIHADETELF------------LSALDGQSDPETKRKIIGKLFIDVFE 315

Query: 132 -VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +++ GAD LA G      +          +  +           +    ++    L 
Sbjct: 316 AKAKEIGGADFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGMKLV 368

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            PL ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 369 EPLRELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|315283144|ref|ZP_07871401.1| argininosuccinate synthase [Listeria marthii FSL S4-120]
 gi|313613211|gb|EFR87098.1| argininosuccinate synthase [Listeria marthii FSL S4-120]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 56  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|313607645|gb|EFR83912.1| argininosuccinate synthase [Listeria monocytogenes FSL F2-208]
          Length = 407

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 8   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 59  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 115

Query: 141 LATG 144
           +A G
Sbjct: 116 IAHG 119


>gi|255030613|ref|ZP_05302564.1| argininosuccinate synthase [Listeria monocytogenes LO28]
          Length = 360

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 7   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 58  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 114

Query: 141 LATG 144
           +A G
Sbjct: 115 IAHG 118


>gi|254831669|ref|ZP_05236324.1| argininosuccinate synthase [Listeria monocytogenes 10403S]
 gi|255027648|ref|ZP_05299634.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-003]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 56  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|116873527|ref|YP_850308.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466515|sp|A0AKJ7|ASSY_LISW6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116742405|emb|CAK21529.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 56  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|16804129|ref|NP_465614.1| argininosuccinate synthase [Listeria monocytogenes EGD-e]
 gi|224501112|ref|ZP_03669419.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-561]
 gi|254827022|ref|ZP_05231709.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165]
 gi|21263427|sp|Q8Y5H2|ASSY_LISMO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|16411560|emb|CAD00168.1| argG [Listeria monocytogenes EGD-e]
 gi|258599404|gb|EEW12729.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 56  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|47095799|ref|ZP_00233404.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|254899212|ref|ZP_05259136.1| argininosuccinate synthase [Listeria monocytogenes J0161]
 gi|254912647|ref|ZP_05262659.1| argininosuccinate synthase [Listeria monocytogenes J2818]
 gi|254936974|ref|ZP_05268671.1| argininosuccinate synthase [Listeria monocytogenes F6900]
 gi|284802536|ref|YP_003414401.1| argininosuccinate synthase [Listeria monocytogenes 08-5578]
 gi|284995678|ref|YP_003417446.1| argininosuccinate synthase [Listeria monocytogenes 08-5923]
 gi|47015803|gb|EAL06731.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609577|gb|EEW22185.1| argininosuccinate synthase [Listeria monocytogenes F6900]
 gi|284058098|gb|ADB69039.1| argininosuccinate synthase [Listeria monocytogenes 08-5578]
 gi|284061145|gb|ADB72084.1| argininosuccinate synthase [Listeria monocytogenes 08-5923]
 gi|293590642|gb|EFF98976.1| argininosuccinate synthase [Listeria monocytogenes J2818]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 56  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|46908325|ref|YP_014714.1| argininosuccinate synthase [Listeria monocytogenes str. 4b F2365]
 gi|47091758|ref|ZP_00229553.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858]
 gi|217963752|ref|YP_002349430.1| argininosuccinate synthase [Listeria monocytogenes HCC23]
 gi|224498464|ref|ZP_03666813.1| argininosuccinate synthase [Listeria monocytogenes Finland 1988]
 gi|226224696|ref|YP_002758803.1| argininosuccinate synthase [Listeria monocytogenes Clip81459]
 gi|254826266|ref|ZP_05231267.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194]
 gi|254854078|ref|ZP_05243426.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503]
 gi|254931801|ref|ZP_05265160.1| argininosuccinate synthase [Listeria monocytogenes HPB2262]
 gi|255520760|ref|ZP_05387997.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-175]
 gi|290892237|ref|ZP_06555233.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071]
 gi|300765563|ref|ZP_07075543.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017]
 gi|68566245|sp|Q71XS4|ASSY_LISMF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807527|sp|B8DH28|ASSY_LISMH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|259585362|sp|C1KX43|ASSY_LISMC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|46881596|gb|AAT04891.1| argininosuccinate synthase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47019769|gb|EAL10507.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858]
 gi|217333022|gb|ACK38816.1| argininosuccinate synthase [Listeria monocytogenes HCC23]
 gi|225877158|emb|CAS05871.1| Putative argininosuccinate synthase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607472|gb|EEW20080.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503]
 gi|290558360|gb|EFD91878.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071]
 gi|293583355|gb|EFF95387.1| argininosuccinate synthase [Listeria monocytogenes HPB2262]
 gi|293595505|gb|EFG03266.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194]
 gi|300513765|gb|EFK40832.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017]
 gi|307571673|emb|CAR84852.1| argG [Listeria monocytogenes L99]
 gi|328465898|gb|EGF37079.1| argininosuccinate synthase [Listeria monocytogenes 1816]
 gi|328472470|gb|EGF43335.1| argininosuccinate synthase [Listeria monocytogenes 220]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L +   +     K           A  V  
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIK---------EKAITVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 56  S---ESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|163747172|ref|ZP_02154528.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanibulbus indolifex HEL-45]
 gi|161379733|gb|EDQ04146.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanibulbus indolifex HEL-45]
          Length = 520

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            RKG   A + V   R 
Sbjct: 222 DQKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDHGLLRKGE--AEEVVTMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             D  N+     D +E F            +  ET    +     +         + +G 
Sbjct: 274 --DHYNMPLIHADEQELFLGE-----LDGVSDPETKRKIIG---KLFIDVFQKHAKDVGD 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 324 ATFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR+L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 377 DEVRELGRELGLPPS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|152971364|ref|YP_001336473.1| GMP synthase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238895961|ref|YP_002920697.1| GMP synthase [Klebsiella pneumoniae NTUH-K2044]
 gi|226739636|sp|A6TCC2|GUAA_KLEP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150956213|gb|ABR78243.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548279|dbj|BAH64630.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 525

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A++
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V +     H+  +            F  + A    P         V          +L  
Sbjct: 273 VMEMFG-DHFGLNIVHVEGEQ---RFLDALAGESDPEAKRKIIGRVFVEVFDEEALKLDD 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|260424888|ref|ZP_05733626.2| PP-loop family protein [Dialister invisus DSM 15470]
 gi|260403540|gb|EEW97087.1| PP-loop family protein [Dialister invisus DSM 15470]
          Length = 285

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 56/211 (26%)

Query: 13  DLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIG-----VTLQLYNSRKASKRKGS 66
           DL    K+M  V VA SGGVDS+    LL    + V+G     VT++L           +
Sbjct: 28  DLRFRLKEMGTVAVAFSGGVDST---FLLHEA-HAVLGKKAVAVTMKL-----------N 72

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               ++  DA+  C   ++   + +            F     A      C  C   + F
Sbjct: 73  SFPFREWKDAKEFCKREHIRQMIVE---------QDQFLIKGFAENERDRCYHCKYFL-F 122

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           S L  + ++     +A G          D G  R  +    +L                 
Sbjct: 123 SFLKELAKKNHISCVADG------TNFSDMGGYRPGLKALAELG---------------- 160

Query: 187 DLRFPL--GDMKKESVRDLAREMGLDIADKS 215
            +  PL   ++ KE +R L+++  L   +K 
Sbjct: 161 -VVSPLREAELTKEEIRALSKKEDLPTWNKP 190


>gi|224368901|ref|YP_002603063.1| ATP-utilizing protein of the PP-loop superfamily [Desulfobacterium
           autotrophicum HRM2]
 gi|223691618|gb|ACN14901.1| ATP-utilizing protein of the PP-loop superfamily [Desulfobacterium
           autotrophicum HRM2]
          Length = 276

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 48/225 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +A SGGVDS+ +AA+ K      + +T++             C           + +
Sbjct: 17  KIAIAFSGGVDSAFLAAVAKDTCGSSVAITVKSAFQSGQEAYNAVC-----------MAE 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H V   +    + ++           T   C  C + + FS L     +LG   +
Sbjct: 66  AIGIRHVVVQADVLGNSRIVK---------NTSERCYFCKKMI-FSLLTDRADELGLKTI 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKES 199
             G        V D    R  +    ++                  +  PL    + K  
Sbjct: 116 VHG------ANVDDLADYRPGLRAAREMG-----------------VIAPLLDAGLTKNE 152

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           +RDL+R  GL   +  D+Q  C   +  Y D +      +   G+
Sbjct: 153 IRDLSRRAGLKTWNM-DAQ-SCLATRIPYGDTITLEKLEMVENGE 195


>gi|323159377|gb|EFZ45362.1| GMP synthase [Escherichia coli E128010]
          Length = 525

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
           V D     H+  +        V VP    + +        +  R +     + V      
Sbjct: 273 VLDMFG-DHFGLNI-------VYVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEAL 324

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L     LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLK 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|296109621|ref|YP_003616570.1| GMP synthase, large subunit [Methanocaldococcus infernus ME]
 gi|295434435|gb|ADG13606.1| GMP synthase, large subunit [Methanocaldococcus infernus ME]
          Length = 310

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 34/199 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D + ++A+SGGVDSSV A L  +     IG      +   A           +
Sbjct: 14  EIKEKIGDRKAIIALSGGVDSSVAAVLTHKA----IG------DKLVAVFVDTGLMRKGE 63

Query: 73  VYDARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             +  RV  D + ++  V D +ERF          +    + P         +       
Sbjct: 64  REEVERVFRDQLGLNLIVVDAKERF--------LEALKGVKDPEEKRKIIGKLFIDIFEE 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +  ++ A+VL  G      +      K    +                     + ++  P
Sbjct: 116 IAEKVKAEVLVQGTIAPDWIETEGKIKSHHNVA---------------LPHGMVLEVVEP 160

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR++A+ +GL 
Sbjct: 161 LRELYKDEVREVAKALGLP 179


>gi|86138375|ref|ZP_01056949.1| GMP synthase [Roseobacter sp. MED193]
 gi|85824900|gb|EAQ45101.1| GMP synthase [Roseobacter sp. MED193]
          Length = 538

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A LL    G  +  V            RKG   A + V   R 
Sbjct: 240 DKKVICGLSGGVDSSVTAVLLHEAIGDQLTCVF-----VDHGLLRKGE--AEEVVTMFR- 291

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D ++ F                 P       R +     + V ++   
Sbjct: 292 --DNYNMQFIHADEQDLF--------LGELEGQSDPE----TKRKIIGKLFIDVFQKHAN 337

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 338 TIDGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 390

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 391 ELFKDEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 429


>gi|262281815|ref|ZP_06059584.1| argininosuccinate synthase [Streptococcus sp. 2_1_36FAA]
 gi|262262269|gb|EEY80966.1| argininosuccinate synthase [Streptococcus sp. 2_1_36FAA]
          Length = 399

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYEQKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|157151381|ref|YP_001449496.1| argininosuccinate synthase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189081217|sp|A8AUN6|ASSY_STRGC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157076175|gb|ABV10858.1| argininosuccinate synthase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 399

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYEQKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|83952132|ref|ZP_00960864.1| GMP synthase [Roseovarius nubinhibens ISM]
 gi|83837138|gb|EAP76435.1| GMP synthase [Roseovarius nubinhibens ISM]
          Length = 523

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDSSV A L+    G  +  V      L+L  + +  K           
Sbjct: 225 DKQVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLLRLNEADEVVKMFR-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D  N+     D  E F            +  ET        R +     + V 
Sbjct: 277 -------DHYNIPLIHADESELFLGE-----LDGVSDPETK-------RKIIGRLFIDVF 317

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ++      GA+ LA G      +          +  +           +    ++    L
Sbjct: 318 QKHANSIDGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKL 370

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL      DS    F+ +  +         G+A+   G+I
Sbjct: 371 VEPLRELFKDEVRALGRELGLP-----DS----FIGRHPF------PGPGLAIRCPGEI 414


>gi|226946013|ref|YP_002801086.1| GMP synthase [Azotobacter vinelandii DJ]
 gi|226720940|gb|ACO80111.1| GMP synthase [Azotobacter vinelandii DJ]
          Length = 526

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 231 VLLGLSGGVDSSVVAALLHRAIGDRLTCVFVDNGLLRLHEGDQVMAMF------------ 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E +F   +             G T +          F       
Sbjct: 279 ---AENMGVKVIRADAEAQFLANLAGVSDPEQKRKIIGRTFIEV--------FDA--EAA 325

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +      LA G      +        +  + +           +    +     L  PL 
Sbjct: 326 KLENIRFLAQGTIYPDVIESAGARTGKAHVIKSHHN-------VGGLPEDMNLKLVEPLR 378

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 379 ELFKDEVRKIGLELGLP 395


>gi|327537782|gb|EGF24487.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodopirellula baltica WH47]
          Length = 506

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 68/200 (34%), Gaps = 29/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + RV+  +SGGVDSSVVAALL    Y  IG  L          RK         
Sbjct: 202 IRKQVGNKRVICGLSGGVDSSVVAALL----YKAIGPQLSCILVDNGLLRKNEQQIVL-- 255

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  +      ++ + E+RF      +  P       G   + C        F D  
Sbjct: 256 ---EEFSNHFKTDLHIVEAEDRFLADLAGIDEPQEKRRRIGHAFIEC--------FKD-- 302

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +   A  LA G      +  G D        +           +    ++   +L  
Sbjct: 303 EAAKIEDAHFLAQGTLYPDVIESGADKDGPAATIKLHHN-------VGGLPEELGFELIE 355

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR L  E+GL 
Sbjct: 356 PLRDLFKDEVRRLGLELGLP 375


>gi|307294927|ref|ZP_07574769.1| GMP synthase, large subunit [Sphingobium chlorophenolicum L-1]
 gi|306879401|gb|EFN10619.1| GMP synthase, large subunit [Sphingobium chlorophenolicum L-1]
          Length = 519

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 41/218 (18%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQL 54
           M    AT++   D+     + RV+  +SGGVDS+V A L+    G  +  V      ++L
Sbjct: 204 MAEFRATKIA--DIRAQVGEGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRL 261

Query: 55  YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
             + +                     +   +     + EERF             AG T 
Sbjct: 262 GEAEQVVSLFR---------------EHYGIKLVHVNAEERFLGG---------LAGLTD 297

Query: 115 LPCVDCNRTVKFSDLL-SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
                     +F  L     +++ GAD LA G      +          +  +       
Sbjct: 298 PEKKRKFIGGEFIALFEEEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN--- 354

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    ++    L  PL ++ K+ VR L RE+GL 
Sbjct: 355 ----VGGLPERMNMKLVEPLRELFKDEVRVLGRELGLP 388


>gi|289804178|ref|ZP_06534807.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 299

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 24  DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 70  VMDMFG-DHFGLNIVHVPAE---DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 125

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 126 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 178

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 179 DEVRKIGLELGLP 191


>gi|254588106|ref|NP_956881.2| GMP synthase [Danio rerio]
 gi|220672808|emb|CAX14207.1| guanine monphosphate synthetase [Danio rerio]
          Length = 692

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 43/221 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSC 67
           ++ +     +V+V +SGGVDS+V  ALL     +     VI V +               
Sbjct: 228 EIREKVDKSKVLVLLSGGVDSTVCTALLNKALNQEQ---VIAVHIDNGF----------- 273

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP------------L 115
              ++          + +   V +    F N              TP             
Sbjct: 274 MRKRESQSVEEALTKLGIKLKVVNAAHTFYNG--TTTLPISEEDRTPRKRISKTLNMTTN 331

Query: 116 PCVDCNRTVKFSDLLSVTRQL--GADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER- 171
           P  +  R +     + V  ++    ++     Y+       D  +    +     ++ + 
Sbjct: 332 P--EEKRKIIGDTFVKVANEVIGEMNLKPEDVYLAQGTLRPDLIESASHLASGKAEVIKT 389

Query: 172 --DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             + +  +     +    +  PL D  K+ VR L RE+GL 
Sbjct: 390 HHNDTELIRKLRDE--GKVIEPLKDFHKDEVRALGRELGLP 428


>gi|114046812|ref|YP_737362.1| GMP synthase [Shewanella sp. MR-7]
 gi|123030774|sp|Q0HX50|GUAA_SHESR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113888254|gb|ABI42305.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. MR-7]
          Length = 525

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKKQVGDDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +A++V +     H+  +            F  +      P         V        
Sbjct: 267 LNEAKQVMEMFG-DHFGLNIVHIDAEN---RFLDALKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++   A  LA G      +        +  + +           +          L  P
Sbjct: 323 AKKCVNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDMELGLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LRELFKDEVRKIGLELGLP 394


>gi|302341803|ref|YP_003806332.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Desulfarculus baarsii DSM 2075]
 gi|301638416|gb|ADK83738.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Desulfarculus baarsii DSM 2075]
          Length = 329

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 87/255 (34%), Gaps = 56/255 (21%)

Query: 24  VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            + + SGG+DS + A +L+R G     VT Q                      ARR    
Sbjct: 12  ALGLYSGGLDSMLAALVLRRAGVAAQVVTFQ--------------SPFFAAEAARRSALA 57

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----RQLGA 138
           +++ H+V +  E +   V  P       G    PCVDC+       +L+       +LG 
Sbjct: 58  LDLPHHVVELGEDYLAMVQHP---PRGHGSQMNPCVDCHAF-----MLARAGRLMDELGL 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L TG  +  R +  + G         ++   + S +     +  L     P   M++ 
Sbjct: 110 DFLFTGEVLGQRPFSQNRG--------ALNAVANDSGYADRLLRP-LSAKLLPPTAMERA 160

Query: 199 ---------SV------RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
                     +      R LA    L ++D       C + +  +   ++ +       G
Sbjct: 161 GLVERQLLQDISGRGRKRQLALAAELGLSDFPSPAGGCLLTEPGFSRRLRDLWGHEPQAG 220

Query: 244 --DIVHLNGQILGRH 256
              I  L    LGRH
Sbjct: 221 ADRIALL---KLGRH 232


>gi|83309831|ref|YP_420095.1| GMP synthase [Magnetospirillum magneticum AMB-1]
 gi|82944672|dbj|BAE49536.1| GMP synthase [Magnetospirillum magneticum AMB-1]
          Length = 518

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 61/194 (31%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSVVAALL    G  +  V                    + V    R  
Sbjct: 221 RVICGLSGGVDSSVVAALLHEAIGDQLTCVF--------VDTGFMRAGESEQVVSVFR-- 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL- 136
           D  N+     D    F + +             G T                    + + 
Sbjct: 271 DRFNIKLVHKDASGLFLDKLASLTDPEKKRKIIGATF-----------IDVFEEEAKAVG 319

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LA G      +          +  +           +    ++    L  PL ++ 
Sbjct: 320 GADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELF 372

Query: 197 KESVRDLAREMGLD 210
           K+ VR L RE+GL 
Sbjct: 373 KDEVRALGRELGLP 386


>gi|315927619|gb|EFV06950.1| thiamine biosynthesis protein:ExsB [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 327

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 37/251 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDG----------KRRRIMCRPMDLERDQSY---FLFATTQQQLCD 187
           + TG  +  R                     ++ RPM  +              +++L  
Sbjct: 108 IITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWVDREKLEG 167

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +    G  +K  + +LA + GL+  +       C +         K+I   I  + D+  
Sbjct: 168 II---GRSRKRQL-ELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFIEFDKDMRV 218

Query: 248 LNGQIL--GRH 256
            + Q+L  GRH
Sbjct: 219 NDAQLLKYGRH 229


>gi|313681460|ref|YP_004059198.1| gmp synthase (glutamine-hydrolyzing) [Sulfuricurvum kujiense DSM
           16994]
 gi|313154320|gb|ADR32998.1| GMP synthase (glutamine-hydrolyzing) [Sulfuricurvum kujiense DSM
           16994]
          Length = 514

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 30/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVAALL    Y+ IG  L          RKG   + ++++     
Sbjct: 217 EGKVLCALSGGVDSSVVAALL----YEAIGDQLIPVFVDNGLLRKGERESVENIFKV--- 269

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              + V   V D  E F      V  P       G T +   +              +  
Sbjct: 270 --HLKVPLVVADASEIFLGKLAGVTDPETKRKIIGHTFIEVFEA----------EAKKHD 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   LA G  +   +          +  +           +         +L  PL D+ 
Sbjct: 318 GIKFLAQG-TLYPDVIESVSVNGPSVTIKSHHN-------VGGLPDWMDFELIEPLRDLF 369

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 370 KDEVRKLGLELGLP 383


>gi|67921332|ref|ZP_00514851.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857449|gb|EAM52689.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 515

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      D++D    
Sbjct: 211 DKRVLLALSGGVDSSTLAFLLHQA----IGDKLTCMFIDQGFMRKGEPERLMDIFD---- 262

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++        +RF N            G T     +  R +            +++
Sbjct: 263 -RQFHIPVEYVHARDRFLNK---------LEGIT---DPEKKRRLIGHEFIQVFEEESKR 309

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  D LA G      +   D     +   R     +   + +    +     L  PL  
Sbjct: 310 LGPFDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRK 368

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 369 LFKDEVRKVGRSIGLP 384


>gi|257460244|ref|ZP_05625347.1| thiamine biosynthesis protein:ExsB [Campylobacter gracilis RM3268]
 gi|257442309|gb|EEV17449.1| thiamine biosynthesis protein:ExsB [Campylobacter gracilis RM3268]
          Length = 327

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V+ + + +    K  K +                
Sbjct: 1   MKALALFSGGLDSMLAVKLIVSQGIEVLALNMDIGFGGKDDKSEIMRRRAAAAGA----- 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                +    D    +   V+  F   Y  G+   PC+DC+  + F   L++ +  GA  
Sbjct: 56  -----NFKSVDIRSEYLQQVL--FGPKYGYGKHFNPCIDCHGYM-FKTALAMLQSEGASF 107

Query: 141 LATGHYIRSRLYVG 154
           + TG  +  R    
Sbjct: 108 IITGEVLGQRPMSQ 121


>gi|218288869|ref|ZP_03493120.1| NAD+ synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240958|gb|EED08135.1| NAD+ synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 283

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 41/193 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V  +SGG+DS++ A L     G D V  V +                + + + DA +
Sbjct: 34  QKAVFGLSGGIDSALTAFLAAEALGRDRVHAVLM-----------PYRTSSPKSLEDALK 82

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V + + + H V D        V   FA      G         NR           R+  
Sbjct: 83  VVEALGIPHTVIDITAP----VDAYFAQVDRVLGYEANALRRGNRM---------ARERM 129

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L       + L +G   K   ++              + T    +     P+GD+ K
Sbjct: 130 VT-LYDLSAAMNALVLGTSNKTELLL-------------GYGTQFGDMASALNPIGDLYK 175

Query: 198 ESVRDLAREMGLD 210
             VR LA  +G+ 
Sbjct: 176 CQVRQLAAHLGVP 188


>gi|157415511|ref|YP_001482767.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|226738412|sp|A8FMV3|GUAA_CAMJ8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157386475|gb|ABV52790.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748153|gb|ADN91423.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932397|gb|EFV11340.1| GMP synthase [Campylobacter jejuni subsp. jejuni 327]
          Length = 511

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++   
Sbjct: 217 KVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK-- 266

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
              +T+ +     D  E F         S  A    P     +  N  +         ++
Sbjct: 267 ---NTLGIDLISIDASEIF--------LSRLANVRDPEQKRKIIGNTFI--EVFEEEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRALGLELGLS 380


>gi|212703980|ref|ZP_03312108.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098]
 gi|212672593|gb|EEB33076.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098]
          Length = 354

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 75/234 (32%), Gaps = 35/234 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D R++VA+SGG DS  +   L R GYDV G+ + L     +   +G            R
Sbjct: 98  RDERILVALSGGKDSLALMLELSRQGYDVTGLHIDLGIPESSPVARGV---------VER 148

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    +   V +        + +P            P       +K      V    G 
Sbjct: 149 FCAKHGLKLMVKELAAE---GLAIPLVKERLN----RPVCSACGKIKRHFFNKVALDEGF 201

Query: 139 DVLATGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D LATGH +       DD   R     +        DQ   L    +        PL  +
Sbjct: 202 DALATGHNL-------DDEVARLFSNTLRWDTAYLSDQGPRLD--GEDGFARKVKPLWRL 252

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--GIALEGDIVH 247
            +    + A  MG++          C    G  F  +K +      A+ G  + 
Sbjct: 253 SEFETANYAFLMGIEHHYAP-----CPYSPGASFSTLKALLQRLEAAMPGRKLD 301


>gi|88809316|ref|ZP_01124824.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 7805]
 gi|88786535|gb|EAR17694.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 7805]
          Length = 528

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 DKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
               N+     +  +RF   +                 +     ++       +R+LG  
Sbjct: 276 -RKFNIHVEYINARQRFLEKLKDITDPEQKRK------IIGTEFIRV--FEEESRRLGPF 326

Query: 139 DVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           D LA G  Y       G +   +      + ++   +  +    +     L  PL  + K
Sbjct: 327 DYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLRKLFK 384

Query: 198 ESVRDLAREMGLD 210
           + VR + R +GL 
Sbjct: 385 DEVRKVGRSLGLP 397


>gi|284163626|ref|YP_003401905.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284013281|gb|ADB59232.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 429

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RV +A SGG+D++V   LL+ + GYD VIGVT                    +  +A  
Sbjct: 2   TRVALAFSGGLDTTVCVPLLEEEYGYDDVIGVT------------VDVGQPASEFEEAEE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D + + HYV D +E F +  +    ++      PL      R V    +L V  +   
Sbjct: 50  TADALGLEHYVVDAKEEFADLCLEGVRANATYQGYPLGTALA-RPVIAEAILEVAEEQDC 108

Query: 139 DVLATG 144
             +A G
Sbjct: 109 TGIAHG 114


>gi|257052580|ref|YP_003130413.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940]
 gi|256691343|gb|ACV11680.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940]
          Length = 404

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + +   +  V +A SGG+D++V   LLK + GY DVIGVT+ +                 
Sbjct: 1   MTQQDGNGTVALAFSGGLDTTVCVPLLKEEYGYDDVIGVTVDVGQPDYEFDE-------- 52

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
               A    + + + HYV D  E F +  +    ++      PL        +       
Sbjct: 53  ----AEETAEALGLDHYVVDAREAFADLCLQAVEANADYQGYPLGTALARPVIAEGI-AD 107

Query: 132 VTRQLGADVLATG 144
           V R+ G   LA G
Sbjct: 108 VAREQGCSALAHG 120


>gi|189426268|ref|YP_001953445.1| thiamine biosynthesis protein [Geobacter lovleyi SZ]
 gi|189422527|gb|ACD96925.1| thiamine biosynthesis protein [Geobacter lovleyi SZ]
          Length = 333

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 88/254 (34%), Gaps = 40/254 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
             R +   SGG+DS +   ++++ G DV+ +          +     C    D    A R
Sbjct: 2   QRRALALFSGGLDSILAVKVIQQQGIDVLAI--------NFTSPFFGCSPILDGEPVAAR 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                ++          F   +  P    +  G    PC+DC   +      ++ ++L A
Sbjct: 54  YARRYDIPFRSIPLGAEFIEMLRHP---RHGYGSALNPCIDCKTFM-LRCAGALLQELQA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFL-------FATTQ 182
           D + TG  +  R         R I         + RP+  +    Y             +
Sbjct: 110 DFVITGEVVGQRPMSQRQDTLRLIERDCGIAGLLLRPLSAK----YMKVTIPEAEGWVNR 165

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +QL  ++   G  +K+ +R LA E+G  + +       C + +  Y   VK +     + 
Sbjct: 166 EQLPAIK---GRGRKDQMR-LAAELG--VDEYPAPGGGCLLTEESYIPKVKDLLDHQTVP 219

Query: 243 GDIVHLNGQILGRH 256
             I   +    GRH
Sbjct: 220 -VIRDFDLLRTGRH 232


>gi|289612991|emb|CBI59975.1| unnamed protein product [Sordaria macrospora]
          Length = 400

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V              G      +      
Sbjct: 102 DGKVICGLSGGVDSSVAALLIHEAIGEQLTCVF-----------VDGGILRAGEAEQVVS 150

Query: 79  VCD-TINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +     N+     D ++ F +    V  P A     G+T                 +   
Sbjct: 151 LFRGHYNIPLVHVDAQDLFMDGLAGVTDPEAKRKFIGKTF-----------IDVFEAEAN 199

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L GA  LA G      +          +  +           +    ++    L  PL 
Sbjct: 200 KLGGAQFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMALVEPLR 252

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L RE+GL 
Sbjct: 253 ELFKDEVRALGRELGLP 269


>gi|307693285|ref|ZP_07635522.1| GMP synthase [Ruminococcaceae bacterium D16]
          Length = 513

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 70/200 (35%), Gaps = 48/200 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++A+SGGVDSSVVAALL    G  +  V      ++L    +  +             
Sbjct: 220 KVLLALSGGVDSSVVAALLAEAVGSQLTCVFVDHGLMRLNEGDEVEQAFSKW-------- 271

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
                   +++    D E+RF             AG +     +  R +           
Sbjct: 272 --------DINFVRVDAEQRFLGK---------LAGIS---DPESKRKIIGEEFIRVFEE 311

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +++G  D LA G      +  G            +    D   F     Q+ +     
Sbjct: 312 EAKKIGKVDFLAQGTIYPDVIESGAGDAAVIKSHHNVGGLPDYVDF-----QEIIE---- 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L RE+GL 
Sbjct: 363 PLRMLFKDEVRQLGRELGLP 382


>gi|212224909|ref|YP_002308145.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
 gi|212009866|gb|ACJ17248.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 276

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 22/130 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  + ++A SGG DS+V   L K   Y V           +A        A + + +A+
Sbjct: 50  KKVDKAILAFSGGKDSTVALYLAKEV-YKV--------PELEAVMIDHGLMAEEAIENAK 100

Query: 78  RVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           R+ + +NV   +   DY + FR A+           E+  PC  C++      L     +
Sbjct: 101 RIAEHLNVPFRILRYDYSDIFREAL--------LKAES--PCRRCSKRT-MERLRKYALK 149

Query: 136 LGADVLATGH 145
            G   + TGH
Sbjct: 150 KGYHYIITGH 159


>gi|57168817|ref|ZP_00367948.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019864|gb|EAL56547.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 327

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 37/251 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYV--GDDGKRRRIM--------CRPMDLERDQSY---FLFATTQQQLCD 187
           + TG  +  R     GD   + + +         RPM  +              +++L  
Sbjct: 108 IITGEVLGQRPMSQRGDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWVDREKLEG 167

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +    G  +K  + +LA + GL+  +       C +         K+I   I  + D+  
Sbjct: 168 II---GRSRKRQL-ELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFIEFDKDMQV 218

Query: 248 LNGQIL--GRH 256
            + Q+L  GRH
Sbjct: 219 NDAQLLKYGRH 229


>gi|294807986|ref|ZP_06766763.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294444799|gb|EFG13489.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 450

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 155 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH-----------VNHGLMRKGESEDVVE 203

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
           V  + +  +    D        V   F +  A  E P     +     ++        R+
Sbjct: 204 VFSNQLKANLIYVD--------VTDRFLNKLAGVEDPEQKRKIIGGEFIRV--FEEEARK 253

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 254 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFELVEPLRQ 303

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 304 LFKDEVRACGLELGLP 319


>gi|217968167|ref|YP_002353673.1| Argininosuccinate synthase [Dictyoglomus turgidum DSM 6724]
 gi|254807521|sp|B8E0N9|ASSY_DICTD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|217337266|gb|ACK43059.1| Argininosuccinate synthase [Dictyoglomus turgidum DSM 6724]
          Length = 397

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV    L+++   DVI +T                  G D+ + +   
Sbjct: 5   KVVLAYSGGLDTSVAIKWLMQKYSLDVITLT-------------VDIGQGIDLNEIKNKA 51

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
           + + V   YV D  E F    I+P   S A  E   P     +R +    L+ V ++ GA
Sbjct: 52  ENLGVEKAYVLDLREEFIKDYIIPAIKSNAMYERVYPLATALSRPLIAKYLVKVAKENGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 KYVAHG 117


>gi|148265774|ref|YP_001232480.1| NAD synthetase [Geobacter uraniireducens Rf4]
 gi|189030449|sp|A5G7Y9|NADE_GEOUR RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|146399274|gb|ABQ27907.1| NH(3)-dependent NAD(+) synthetase [Geobacter uraniireducens Rf4]
          Length = 273

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 46/204 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V+ +SGG+DS++VA L     G + V   T+                  +    AR 
Sbjct: 29  QKAVLGLSGGIDSALVAYLAAEALGPENVYACTM-----------PYRTSNPESEAHARL 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + + +++ V +         I P   +Y      +P  D  R         + R+   
Sbjct: 78  VAERLGINYRVIE---------ITPMVDAYF---QMVPDADNMRRGN-----KMARERM- 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +   H       V     +  ++              + T    +     P+GD+ K 
Sbjct: 120 -TILYDHSAAYSALVLGTSNKTELLL------------GYGTLFGDMASALNPIGDIYKT 166

Query: 199 SVRDLAREMGLD--IADKSDSQDI 220
            V  L+  MG+   + +K  S D+
Sbjct: 167 QVWQLSEAMGVPREVIEKKPSADL 190


>gi|115525265|ref|YP_782176.1| GMP synthase [Rhodopseudomonas palustris BisA53]
 gi|115519212|gb|ABJ07196.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           BisA53]
          Length = 561

 Score = 64.4 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 83/263 (31%), Gaps = 61/263 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+  +SGGVDS+V A L+    G  +  V                        +AR 
Sbjct: 263 QGKVICGLSGGVDSAVAAVLIHEAIGDQLTCVF--------------VDHGLLRKDEARS 308

Query: 79  VCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V D      N+     D  + F              G T     +  R +     + V  
Sbjct: 309 VVDLFRHHYNIPLVHVDAAKLFLGQ---------LDGVT---DPEQKRKIIGKLFIDVFE 356

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              + + GAD LA G      +          +  +           +     +    L 
Sbjct: 357 GEAKMIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMNMKLV 409

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVH 247
            PL ++ K+ VR L +E+GL  A         FV +  +         G+A+   G+I  
Sbjct: 410 EPLRELFKDEVRVLGKELGLPDA---------FVGRHPF------PGPGLAIRCPGEI-T 453

Query: 248 LNGQILGRHNGIINYTIGQRRGL 270
                + RH   +     ++ GL
Sbjct: 454 PEKLDILRHADAVYIDQIRKAGL 476


>gi|308050448|ref|YP_003914014.1| GMP synthase (glutamine-hydrolyzing) [Ferrimonas balearica DSM
           9799]
 gi|307632638|gb|ADN76940.1| GMP synthase (glutamine-hydrolyzing) [Ferrimonas balearica DSM
           9799]
          Length = 524

 Score = 64.4 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 45/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVA LL R  G  +  V      L+L    +  +  G          
Sbjct: 228 KVILGLSGGVDSSVVAMLLHRAIGSQLTCVFVDNGLLRLNEGDQVMEMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                D   ++    D EERF NA           GE      +  R +     + V  +
Sbjct: 278 -----DHFGLNIVRVDAEERFLNA---------LEGEN---DPEAKRKIIGHTFIEVFDE 320

Query: 136 -----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                     LA G      +        +  + +           +    +     L  
Sbjct: 321 EASKIQDVKWLAQGTIYPDVIESAGAATGKAHVIKSHHN-------VGGLPEDMELGLVE 373

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 374 PLTELFKDEVRKIGLELGLP 393


>gi|283954810|ref|ZP_06372326.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793650|gb|EFC32403.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 511

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++ 
Sbjct: 215 NNKVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +T+ +     D  E F + +                 +  N  +         ++
Sbjct: 267 -----NTLGIDLISIDASEIFLSRLANITNPEQKRK------IIGNTFI--EVFEKEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKYLAQGTLYTDIIESSVVGTSKTI--KSHHN-------VGGLPEKMNLKLIEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRTLGLELGLS 380


>gi|325111007|ref|YP_004272075.1| GMP synthase (glutamine-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324971275|gb|ADY62053.1| GMP synthase (glutamine-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 531

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 68/194 (35%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+  +SGGVDSSVVAALL    Y  IG  L          RKG   + +  +      +
Sbjct: 235 RVICGLSGGVDSSVVAALL----YRAIGPQLSCIFVDNGLLRKGESDSVRHHFQ-----E 285

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-----L 136
                 +V D  ++F                + +      R +     + V R+      
Sbjct: 286 HFRTDLHVVDASKQF------------LGELSGVSDPQKKRKIIGKIFIDVFREEAKSID 333

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G +        +           +    ++   +L  PL D+ 
Sbjct: 334 DARFLAQGTLYPDVIESGANKDGPAATIKSHHN-------VGGLPEELGFELIEPLRDLF 386

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+GL 
Sbjct: 387 KDEVRKMGLELGLP 400


>gi|291278883|ref|YP_003495718.1| NAD(+) synthase [Deferribacter desulfuricans SSM1]
 gi|290753585|dbj|BAI79962.1| NAD(+) synthase [Deferribacter desulfuricans SSM1]
          Length = 275

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 48/194 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
             VVV +SGG+DS++ A L           TL L   R  +        + + + DA+ V
Sbjct: 31  KNVVVGLSGGIDSALSATL----------ATLALGKDRVYAYALPYKTSSKESLDDAKLV 80

Query: 80  CDTINVSHYVF---DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            D + V+  +    D+ + + +    P  S    G            ++   L   + ++
Sbjct: 81  ADFLGVNFEIIEITDFVDPYFDK--NPDISKLRKGNVMA-------RMRMIVLFDKSAEV 131

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G  VL T                +  +              + T    L     P+GD+ 
Sbjct: 132 GGLVLGT--------------SNKTELLLG-----------YGTWYGDLASAINPIGDLY 166

Query: 197 KESVRDLAREMGLD 210
           K  V +LA  + + 
Sbjct: 167 KTQVWELAVYLNIP 180


>gi|195580620|ref|XP_002080133.1| GD21646 [Drosophila simulans]
 gi|194192142|gb|EDX05718.1| GD21646 [Drosophila simulans]
          Length = 677

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 28/205 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R    + +I V +     RK    K      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALYPHQIIAVHVDNGFMRKKESEK----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +      M     ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VRDL  ++GL 
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP 418


>gi|281365319|ref|NP_620114.3| burgundy [Drosophila melanogaster]
 gi|21428562|gb|AAM49941.1| LD42771p [Drosophila melanogaster]
 gi|272407126|gb|AAF53975.3| burgundy [Drosophila melanogaster]
          Length = 683

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 28/205 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R    + +I V +     RK    K      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALYPHQIIAVHVDNGFMRKKESEK----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +      M     ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VRDL  ++GL 
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP 418


>gi|18461323|gb|AAL71891.1|AF015270_1 GMP synthetase [Drosophila melanogaster]
          Length = 720

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 28/205 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R    + +I V +     RK    K      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALYPHQIIAVHVDNGFMRKKESEK----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +      M     ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VRDL  ++GL 
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP 418


>gi|124027202|ref|YP_001012522.1| argininosuccinate synthase [Hyperthermus butylicus DSM 5456]
 gi|166219971|sp|A2BJL6|ASSY_HYPBU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|123977896|gb|ABM80177.1| Argininosuccinate synthase [Hyperthermus butylicus DSM 5456]
          Length = 396

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VV+A SGG+D+S +  LL+  G++V+ VT              S    +D+ +     
Sbjct: 1   MKVVLAYSGGLDTSAILVLLREQGHEVVTVT-------------VSVGQEEDLEEVEERA 47

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
             +    HY  +  E F    I     + A  E   P      R +    +  + R+  A
Sbjct: 48  YKLGASKHYTVNAVEEFAEKYISMAIKANALYEDKYPLGTALARPLIAEKVAEIARKESA 107

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIM 163
           D +A G   +    V  D   +  +
Sbjct: 108 DAVAHGCTSKGNDQVRFDTMLKYYL 132


>gi|24374803|ref|NP_718846.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella oneidensis MR-1]
 gi|44887962|sp|Q8EC52|GUAA_SHEON RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24349480|gb|AAN56290.1|AE015766_6 GMP synthase [Shewanella oneidensis MR-1]
          Length = 525

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKKQVGDDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +A++V +     H+  +            F  +      P         V        
Sbjct: 267 LNEAKQVMEMFG-DHFGLNIVHVDAEN---RFLDALKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++   A  LA G      +        +  + +           +          L  P
Sbjct: 323 AKKCVNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDMELGLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LRELFKDEVRKIGLELGLP 394


>gi|150021282|ref|YP_001306636.1| NAD synthetase [Thermosipho melanesiensis BI429]
 gi|149793803|gb|ABR31251.1| NAD+ synthetase [Thermosipho melanesiensis BI429]
          Length = 574

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 25/158 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DSS+VAA+     G D V+G+ +                +   + DA+ 
Sbjct: 316 KKVVIGLSGGMDSSLVAAIAVEALGKDNVLGILM-----------PSMYSSSHSIEDAKN 364

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA--GETPLPCVDCN--RTVKFSDLLSVTR 134
           + + + + +Y+   E  + +     F +        T     + N    ++ + L++++ 
Sbjct: 365 LAENLGIKYYIIKIENIYYS-----FVNELKEIFSNTKEDITEENLQARIRGTILMAISN 419

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           + G  VLATG                  M       +D
Sbjct: 420 KFGHIVLATG---NKSEIATGYSTLYGDMVGGFSPIKD 454


>gi|167646179|ref|YP_001683842.1| GMP synthase [Caulobacter sp. K31]
 gi|167348609|gb|ABZ71344.1| GMP synthase, large subunit [Caulobacter sp. K31]
          Length = 528

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 68/234 (29%), Gaps = 56/234 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDSSV A L+    G  +  V                      + +A +V 
Sbjct: 232 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDTGLLRLNEADQVV 277

Query: 81  ----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----- 131
               D  N+     D    F                  +   +  R +     +      
Sbjct: 278 TLFRDHYNIPLIHVDAGAEF------------LGALAGVSDPETKRKIIGGKFIDIFDRE 325

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  GAD LA G      +           + +           +          L  P
Sbjct: 326 AAKIDGADFLAQGTLYPDVVESVSARGGPSAVIKSHHN-------VGGLPDFMKLKLVEP 378

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           L ++ K+ VR L  E+GL  A         FV +  +          I + GDI
Sbjct: 379 LRELFKDEVRALGVELGLAPA---------FVGRHPFPG----PGLAIRIPGDI 419


>gi|113969579|ref|YP_733372.1| GMP synthase [Shewanella sp. MR-4]
 gi|117919685|ref|YP_868877.1| GMP synthase [Shewanella sp. ANA-3]
 gi|123130599|sp|Q0HKV2|GUAA_SHESM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739734|sp|A0KUK2|GUAA_SHESA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113884263|gb|ABI38315.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. MR-4]
 gi|117612017|gb|ABK47471.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. ANA-3]
          Length = 525

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKKQVGDDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +A++V +     H+  +            F  +      P         V        
Sbjct: 267 LNEAKQVMEMFG-DHFGLNIVHVDAEN---RFLDALKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++   A  LA G      +        +  + +           +          L  P
Sbjct: 323 AKKCVNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDMELGLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LRELFKDEVRKIGLELGLP 394


>gi|297616924|ref|YP_003702083.1| NAD+ synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144761|gb|ADI01518.1| NAD+ synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 240

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 50/196 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV  +SGG+DS+VV AL +R  G DV+G+ +                + QD+ DA+ V D
Sbjct: 22  VVFGLSGGIDSAVVGALSRRAFGDDVLGIIM------------PCQSSVQDMLDAKLVAD 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA-----GETPLPCVDCN--RTVKFSDLLSVTR 134
            +++   + + ++ ++          Y A      E     V  N    ++   L    +
Sbjct: 70  ELSIPCIMVELDDAYQL-----LLGQYEAFVKIGNEEKARQVKGNIKPRLRMITLYYFAQ 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LG   L  G   R  L VG   K         D   D                  P+G 
Sbjct: 125 ALG--YLVVGTSNRDELEVGYFTKY-------GDGGVD----------------LMPIGA 159

Query: 195 MKKESVRDLAREMGLD 210
           + K  VR+LA+ +G+ 
Sbjct: 160 LVKSQVRELAKFLGVP 175


>gi|257052428|ref|YP_003130261.1| NAD synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691191|gb|ACV11528.1| NAD+ synthetase [Halorhabdus utahensis DSM 12940]
          Length = 275

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 42/191 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R V+ +SGGVDSS+VA L     G + + G+ +             S      + DA RV
Sbjct: 45  RAVLGLSGGVDSSLVAHLAVEAIGAENLHGLVM-----------PSSVNDEATMSDAERV 93

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + + V +      N ++  F  +Y   E     V  N  V+   +L+       +
Sbjct: 94  AMELGIEYDVIEI-----NPIVDTFLDAYPEAEGEKMAVG-NVRVRARAVLNYLVANTEN 147

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   R+    G                    YF         C    P+ ++ K+ 
Sbjct: 148 ALVLGTGNRTESLTG--------------------YFTKYGDGAVDCH---PIANLYKQQ 184

Query: 200 VRDLAREMGLD 210
           VR LAR +G+ 
Sbjct: 185 VRQLARHVGVP 195


>gi|160884988|ref|ZP_02065991.1| hypothetical protein BACOVA_02984 [Bacteroides ovatus ATCC 8483]
 gi|237718004|ref|ZP_04548485.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147700|ref|ZP_07040763.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_23]
 gi|156109338|gb|EDO11083.1| hypothetical protein BACOVA_02984 [Bacteroides ovatus ATCC 8483]
 gi|229452645|gb|EEO58436.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298513883|gb|EFI37769.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_23]
          Length = 435

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH-----------VNHGLMRKGESEDVVE 188

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
           V  + +  +    D        V   F +  A  E P     +     ++        R+
Sbjct: 189 VFSNQLKANLVYVD--------VTDRFLNKLAGVEDPEQKRKIIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +     L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFQLVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGLELGLP 304


>gi|294794888|ref|ZP_06760023.1| NAD+ synthetase [Veillonella sp. 3_1_44]
 gi|294454250|gb|EFG22624.1| NAD+ synthetase [Veillonella sp. 3_1_44]
          Length = 255

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 78/232 (33%), Gaps = 42/232 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG DS++VAAL K   G D V+GV +                   D+ DA+ V +
Sbjct: 30  VVGISGGKDSTIVAALCKEALGADRVVGVLMPN-------------GVQSDIDDAQAVVN 76

Query: 82  TINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLG 137
            + + H   +    +    +A++         G T L      N   +            
Sbjct: 77  HLGIPHMTVNIGAAYEALTHAIVQAKGYDVVTGRTDLSKDAAINTPPRLR---------- 126

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +AT + +   L    +G R    C   +      Y  ++T          PL  +  
Sbjct: 127 ---MATLYAVGQNL---PNGARVANTCNGSED-----YVGYSTKYGDSAGDFSPLAQLVV 175

Query: 198 ESVRDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           E VR + +  ++ L + DK  S  +              I       G+I  
Sbjct: 176 EEVRQIGKLLDIPLHLVDKVPSDGLSGQSDEDKLGFTYAILDRYIRTGEIED 227


>gi|322379304|ref|ZP_08053685.1| argininosuccinate synthase [Helicobacter suis HS1]
 gi|322379958|ref|ZP_08054234.1| argininosuccinate synthase [Helicobacter suis HS5]
 gi|321147610|gb|EFX42234.1| argininosuccinate synthase [Helicobacter suis HS5]
 gi|321148275|gb|EFX42794.1| argininosuccinate synthase [Helicobacter suis HS1]
          Length = 342

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 18/153 (11%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           DS +   L+   G +VI +   +          G       +   +     I V   + D
Sbjct: 2   DSLLSMHLVASQGIEVIALHFNI----------GFGGNKDKLEYLQNATKQIGVELLLCD 51

Query: 92  YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL 151
             E+F N V+  F+  Y  G+   PC+DC+  + F        +L AD + +G  +  R 
Sbjct: 52  IREQFFNEVL--FSPKYGYGKYFNPCIDCHANM-FKQAFYKLLELRADFVISGEVLGQRP 108

Query: 152 YVGDDG--KRRRIMCRPMDLERDQSYFLFATTQ 182
                    + + + R       QS F     +
Sbjct: 109 KSQRREAMDQVKKLVRAFGE---QSCFDALLDR 138


>gi|197104883|ref|YP_002130260.1| GMP synthase [Phenylobacterium zucineum HLK1]
 gi|254800109|sp|B4R9R7|GUAA_PHEZH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|196478303|gb|ACG77831.1| GMP synthase [Phenylobacterium zucineum HLK1]
          Length = 520

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 60/199 (30%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R++  +SGGVDSSV A L+    G  +  V                      + +A +
Sbjct: 222 DGRIICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLNEAEQ 267

Query: 79  VC----DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D  N+     D  E F  A   V  P       G   +   D            
Sbjct: 268 VVTMFRDHYNIPLVHVDAAEEFLGALAGVTDPETKRKTIGRLFVEVFDR----------E 317

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  GA  LA G      +           + +           +          L  P
Sbjct: 318 AAKIEGAAFLAQGTLYPDVIESVSARGGPSAVIKSHHN-------VGGLPDYMKLKLVEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 371 LRELFKDEVRALGVELGLP 389


>gi|304391249|ref|ZP_07373193.1| GMP synthase [Ahrensia sp. R2A130]
 gi|303296605|gb|EFL90961.1| GMP synthase [Ahrensia sp. R2A130]
          Length = 528

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+  +SGGVDSSV A L+       IG         + +         +    A+ V
Sbjct: 230 DGKVICGLSGGVDSSVAALLIHEA----IG--------DQLTCILVDHGLMRMDEAAQVV 277

Query: 80  C---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +  ++     D  + F          +      P         +         R++
Sbjct: 278 AMFNEHYDIKLIHVDAADMF--------IDALEGESDPETKRKTIGKLFIDVFEEEARKI 329

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA+ LA G      +          +  +           +    ++    L  PL ++
Sbjct: 330 GGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLVEPLREL 382

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 383 FKDEVRVLGHELGLP 397


>gi|114569735|ref|YP_756415.1| GMP synthase [Maricaulis maris MCS10]
 gi|114340197|gb|ABI65477.1| GMP synthase (glutamine-hydrolyzing) [Maricaulis maris MCS10]
          Length = 519

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 66/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV+  +SGGVDSSV A LL    G  ++ V      ++   + +              
Sbjct: 221 DKRVLCGLSGGVDSSVAAVLLHEAIGDQLVCVFVDTGLMRQGEADEVVTLFR-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +  N+     + E+ F  A           G       +  R +  S  + V 
Sbjct: 273 -------EHYNIPLVHAEAEDLFLTA---------LKGVD---DPEKKRKIIGSLFIDVF 313

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +      GAD LA G      +          +  +           +     +    L
Sbjct: 314 DEKAKEAGGADFLAQGTLYPDVIESVSFDGGPSVTIKSHHN-------VGGLPARMKMKL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 367 VEPLRELFKDEVRALGRELGLP 388


>gi|295425684|ref|ZP_06818371.1| GMP synthase [Lactobacillus amylolyticus DSM 11664]
 gi|295064700|gb|EFG55621.1| GMP synthase [Lactobacillus amylolyticus DSM 11664]
          Length = 494

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 38/212 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 181 TMDDFIEMKIDDIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGQQLTCIF---VDHGML 237

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    +  +RF              G T     + 
Sbjct: 238 RKDEGDQVMKALNKD-------LGVNIIRVNAADRFLGK---------LKGVT---DPEK 278

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 279 KRKIIGKEFIEVFNEEAKKLNDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 329

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
            +    +     L  PL  + K+ VR+L  ++
Sbjct: 330 -VGGLPKDMHFKLIEPLRKLFKDEVRELGEKL 360


>gi|288932186|ref|YP_003436246.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
 gi|288894434|gb|ADC65971.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
          Length = 302

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 48/237 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
              ++ +AMSGG DS  +A  L     KR   +   +T+                    V
Sbjct: 46  SGDKIALAMSGGKDSVTLAHTLIELYGKRRDLEFFAITI---------DEGIEGYRPPTV 96

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A++VC  + + H V  + E      I           +   C  C    K+  L    
Sbjct: 97  EIAKKVCRDLGIEHVVVSFREE-----IGLDLDEMVERGSRNACTYCGVFRKY-LLNRTA 150

Query: 134 RQLGADVLATGHYIRSRLYV------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           R+LGA  LATGH +              D +R   +      +R Q   ++         
Sbjct: 151 RELGATKLATGHNLDDETQTILLNFLNADIERLARLI----PQRVQKGLVYRIK------ 200

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC----FVQQGKYFDVVKRINAGIA 240
              PL ++ ++ V   A    L +     S + C    F  +    D +        
Sbjct: 201 ---PLREIYEKEVVVYAIINNLPV-----SLEECPYSRFPARALVRDFIYEFEKKYP 249


>gi|222481023|ref|YP_002567260.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453925|gb|ACM58190.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239]
          Length = 412

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V +A SGG+D++V   LLK + GYD VIGV     +  + ++             A    
Sbjct: 4   VALAFSGGLDTTVCVPLLKEEYGYDEVIGV---NVDVGQPTEEFDE---------AEETA 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + +  +V D +E F +       ++      PL      R V    +L V  + G D 
Sbjct: 52  DALGLDLHVVDAKEEFADLCYDAVKTNATYQGYPLGTALA-RPVIAEAILGVAEEQGCDA 110

Query: 141 LATG 144
           +A G
Sbjct: 111 IAHG 114


>gi|330504661|ref|YP_004381530.1| GMP synthase [Pseudomonas mendocina NK-01]
 gi|328918947|gb|AEB59778.1| GMP synthase [Pseudomonas mendocina NK-01]
          Length = 525

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +              
Sbjct: 227 DANVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF--------- 277

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                  + + V     + EE+F + +             G T +          F    
Sbjct: 278 ------AENMGVKVIRANAEEQFLSNLAGEADPEKKRKIIGRTFIDV--------FDA-- 321

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++      LA G      +        +  + +           +    ++    L  
Sbjct: 322 EASKLDNIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 375 PLRELFKDEVRKIGLELGLP 394


>gi|288818620|ref|YP_003432968.1| GMP synthase [Hydrogenobacter thermophilus TK-6]
 gi|288788020|dbj|BAI69767.1| GMP synthase [Hydrogenobacter thermophilus TK-6]
 gi|308752211|gb|ADO45694.1| GMP synthase, large subunit [Hydrogenobacter thermophilus TK-6]
          Length = 507

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 35/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++    KD +V+ A+SGGVDS+V A L     Y  IG  L+         RKG     + 
Sbjct: 206 EIKSTVKDGKVICALSGGVDSTVAATLT----YKAIGNNLKCIFVDHGLLRKGEVQEVEG 261

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +       ++++     D +E F +    V  P       G T +              
Sbjct: 262 YF------RSLSLPFKTVDAKELFLSRLRGVEDPEEKRRIVGYTFIEV-----------F 304

Query: 130 LSVTRQLGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +++GAD L  G  Y       G  G +                 +    ++    L
Sbjct: 305 EEEAKKVGADFLLQGTLYPDVVESAGLPGAKVIKTHHN----------VGGLPERLGIKL 354

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + R +GL 
Sbjct: 355 LEPLRELFKDEVRQIGRSLGLP 376


>gi|83591327|ref|YP_431336.1| hypothetical protein Moth_2511 [Moorella thermoacetica ATCC 39073]
 gi|83574241|gb|ABC20793.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 271

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 65/195 (33%), Gaps = 46/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++VA SGGVDSS    LLK      + V         A     S     ++  A R+   
Sbjct: 23  ILVAYSGGVDSS---LLLKVASTTPVKV--------LAVTAASSTYPQAEIEAATRLARE 71

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V H V +  E                   P  C  C + + F+ L  + R+ G   + 
Sbjct: 72  LGVQHMVINTNEMDNPEFC---------ANPPERCYHCKKEL-FATLQELAREHGLKAIV 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G          DD        R       Q+   +            PL +  + K+ +
Sbjct: 122 DGANA-------DD--------RSDFRPGSQAAREYGVKS--------PLQEAGLTKDDI 158

Query: 201 RDLAREMGLDIADKS 215
           R LAR +GL   DK 
Sbjct: 159 RQLARHLGLPNWDKP 173


>gi|222823526|ref|YP_002575100.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter lari RM2100]
 gi|254800090|sp|B9KFL4|GUAA_CAMLR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222538748|gb|ACM63849.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter lari RM2100]
          Length = 511

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 41/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V+ A+SGGVDSSVVAALL    K     V+ V +     R   K +           
Sbjct: 215 NDKVLCAVSGGVDSSVVAALLASAIKDQ---VVVVFVDNGLLRSGEKEQVEYMFKH---- 267

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                 T+ +     D  E F +    V  P       G T +                 
Sbjct: 268 ------TLGIDLISIDAREIFLSRLAGVRDPEQKRKIIGNTFIEV-----------FEEE 310

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++      LA G      +     G  + I  +           +    ++    L  P
Sbjct: 311 AKKHKDVKYLAQGTLYTDIIESSVVGASKTI--KSHHN-------VGGLPEKMNLKLIEP 361

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 362 LKEIFKDEVRALGMELGLS 380


>gi|293402102|ref|ZP_06646241.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304494|gb|EFE45744.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 437

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 69/202 (34%), Gaps = 46/202 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQD 72
           KD +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +          
Sbjct: 141 KDKKVLLALSGGVDSSVVAALLIKAIGKQLVCVHVNHGLMRKGESESVVEVFK------- 193

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
                   + ++ +    D  ERF      V  P       G                  
Sbjct: 194 --------NQLDANLIYADASERFLGKLENVADPEKKRKIIGTEF-----------IRVF 234

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R+L G D LA G        + + G +   M +           +    +     L
Sbjct: 235 EEEARKLEGIDYLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLGFAL 284

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR    E+GL 
Sbjct: 285 VEPLRQLFKDEVRACGLELGLP 306


>gi|89256406|ref|YP_513768.1| GMP synthase [Francisella tularensis subsp. holarctica LVS]
 gi|167010428|ref|ZP_02275359.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254367742|ref|ZP_04983763.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica 257]
 gi|122500707|sp|Q2A3D4|GUAA_FRATH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|89144237|emb|CAJ79510.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253553|gb|EBA52647.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica 257]
          Length = 516

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESASNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|254294170|ref|YP_003060193.1| GMP synthase [Hirschia baltica ATCC 49814]
 gi|254042701|gb|ACT59496.1| GMP synthase, large subunit [Hirschia baltica ATCC 49814]
          Length = 527

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A LL +  G  +  V +     RK    +      ++      
Sbjct: 229 DKQVICGLSGGVDSSVTALLLHQAIGDQLTCVFVNNGLLRKNEAEEVVAMFTENYK---- 284

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
                 +     D  E F               + P         +           + G
Sbjct: 285 ------IKLVYADESELF--------LGELEGQDDPETKRKIIGRLFIDVFQKYADTIEG 330

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 331 AEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 383

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 384 DEVRILGRELGLP 396


>gi|218782480|ref|YP_002433798.1| hypothetical protein Dalk_4652 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763864|gb|ACL06330.1| protein of unknown function DUF814 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 331

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 45/229 (19%)

Query: 24  VVAMS-GGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            + +S GG+DS + A +LK  G +V       + S +               +AR+    
Sbjct: 10  ALGLSSGGLDSILSALVLKEQGIEVS------WISFETPFFSAD--------NARKASAD 55

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +        + +   ++ P A     G+   PC+DC+  + F     V +++GAD L 
Sbjct: 56  TGIPLITRYILDDYLEMLLNPPA---GYGKNMNPCMDCHALM-FRLAHQVMQEIGADFLF 111

Query: 143 TGHYIRSRL---------YVGDDGKRRRIMCRPMDLER-------DQSYFLFATTQQQLC 186
           +G  +  R          YV         + RP+  ++       +Q        ++QL 
Sbjct: 112 SGEVLGQRPKSQTQNALNYVNKHSGAPGYILRPLSAKKLTPTILENQ----GLIDREQLL 167

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
           DL    G  +K  +  LA + G  I +       C +    + D ++ +
Sbjct: 168 DL---NGRSRKPQM-ALAEKYG--IKEYPAPAGGCLLTDKGFSDRLRDL 210


>gi|50411729|ref|XP_457073.1| DEHA2B02420p [Debaryomyces hansenii CBS767]
 gi|49652738|emb|CAG85061.1| DEHA2B02420p [Debaryomyces hansenii]
          Length = 416

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L  +GY+VI   L                  +D  +A R
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEEGYEVIA-YLANI------------GQEEDFEEAER 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F   V  P   +       Y  G +    V     +K     
Sbjct: 49  KALAIGATKFVVVDVRKEFVEQVCFPAIQTNAIYENVYLLGTSLARPVIAQAHIK----- 103

Query: 131 SVTRQLGADVLATG 144
            V  + G   ++ G
Sbjct: 104 -VAEENGCFAVSHG 116


>gi|312874903|ref|ZP_07734922.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089648|gb|EFQ48073.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2053A-b]
          Length = 517

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  ERF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAAERFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|282850275|ref|ZP_06259654.1| conserved hypothetical protein TIGR00268 [Veillonella parvula ATCC
           17745]
 gi|282579768|gb|EFB85172.1| conserved hypothetical protein TIGR00268 [Veillonella parvula ATCC
           17745]
          Length = 248

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 52/199 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +A+SGGVDS+ +A   K+ G  V+          KA   K       ++ DA++V +
Sbjct: 12  KIAIALSGGVDSTYLAYAAKQSG--VLC---------KAYTVKSQFVPQFELEDAKKVAE 60

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGA 138
            I++S  + D        V+           T  P   C  C   V FS +    R+ G 
Sbjct: 61  LIDISLKIIDI------DVLEYDD------ITSNPSNRCYYCKYHV-FSTISEHARRDGF 107

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
            +L  G          DD   R  M             +   +      ++ PL   ++ 
Sbjct: 108 TILCDG------TNASDDVDDRPGMK-----------AIAELS------VKSPLRECNLT 144

Query: 197 KESVRDLAREMGLDIADKS 215
           K  +R LA +  L   DK 
Sbjct: 145 KTMIRKLAYKADLFTWDKP 163


>gi|260462692|ref|ZP_05810898.1| GMP synthase, large subunit [Mesorhizobium opportunistum WSM2075]
 gi|259031598|gb|EEW32868.1| GMP synthase, large subunit [Mesorhizobium opportunistum WSM2075]
          Length = 520

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 31/201 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +V+ A+SGGVDSSV A L+       +G         + +         +  
Sbjct: 216 IRKQVGKGKVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKD 263

Query: 74  YDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             A  V       N+   + D  E+F         S+      P         +      
Sbjct: 264 EAAGVVAMFRQHYNLPLILVDASEKF--------ISALEGEVDPEKKRKTIGRLFIEVFE 315

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L GAD LA G      +          +  +           +    ++    L 
Sbjct: 316 EEAKKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLV 368

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L +E+GL 
Sbjct: 369 EPLRELFKDEVRALGKELGLP 389


>gi|13475784|ref|NP_107351.1| GMP synthase [Mesorhizobium loti MAFF303099]
 gi|21263677|sp|Q987R3|GUAA_RHILO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|14026540|dbj|BAB53137.1| GMP synthetase [Mesorhizobium loti MAFF303099]
          Length = 520

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 31/201 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +V+ A+SGGVDSSV A L+       +G         + +         +  
Sbjct: 216 IRKQVGKGKVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKD 263

Query: 74  YDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             A  V       N+   + D  E+F         S+      P         +      
Sbjct: 264 EAAGVVAMFRQHYNLPLILVDASEKF--------ISALEGEVDPEKKRKTIGRLFIEVFE 315

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L GAD LA G      +          +  +           +    ++    L 
Sbjct: 316 EEAKKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLV 368

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L +E+GL 
Sbjct: 369 EPLRELFKDEVRALGKELGLP 389


>gi|325912457|ref|ZP_08174852.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 143-D]
 gi|325475799|gb|EGC78970.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 143-D]
          Length = 517

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  +RF +           AG T     + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAADRFLSK---------LAGVTK---PER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|144898006|emb|CAM74870.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 517

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 70/202 (34%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             +V+  +SGGVDSSVVAAL+    G  +  V      ++L  S +              
Sbjct: 218 KGKVICGLSGGVDSSVVAALIHEAIGDQLTCVYVDHGLMRLGESEQVVSVFR-------- 269

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  D  N++    D  + F             AG T     +  R       + V 
Sbjct: 270 -------DRFNINLVHKDASDLFLGR---------LAGMT---DPEQKRKTIGGLFIDVF 310

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +++ GAD LA G      +          +  +           +    ++    L
Sbjct: 311 EEEAKRIGGADFLAQGTLYPDVIESVSFIGGPSVTIKSHHN-------VGGLPERMNMKL 363

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR+L RE+GL 
Sbjct: 364 VEPLRELFKDEVRELGRELGLP 385


>gi|313617895|gb|EFR90082.1| argininosuccinate synthase [Listeria innocua FSL S4-378]
          Length = 407

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L         + K      +          
Sbjct: 8   KIVLAYSGGLDTSVAIQWLVESGYEVIACCL------DVGEGKNLXXIKEKAITVGASAS 61

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 62  ------YTIDAKEEFAENFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 115

Query: 141 LATG 144
           +A G
Sbjct: 116 IAHG 119


>gi|254467291|ref|ZP_05080702.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           Y4I]
 gi|206688199|gb|EDZ48681.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           Y4I]
          Length = 520

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 73/234 (31%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V              G     +     + 
Sbjct: 222 DKKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF----------VDHGLLRKNEAEEVVKM 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D  E F                 P       R +     + V ++   
Sbjct: 272 FRDNYNIQLIHADESELF--------LGELEGQSDPE----TKRKIIGKLFIDVFQKHAD 319

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 320 TIDGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 372

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 373 ELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|317051783|ref|YP_004112899.1| hypothetical protein Selin_1613 [Desulfurispirillum indicum S5]
 gi|316946867|gb|ADU66343.1| hypothetical protein Selin_1613 [Desulfurispirillum indicum S5]
          Length = 335

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 90/255 (35%), Gaps = 40/255 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V+ A SGG+DS++ A ++   G++V+ +      +     R     + +D   A+ 
Sbjct: 2   KKPKVLAAYSGGLDSTLAARVMVELGFEVLAIQF----TSPFLGRSYLKESPEDYIRAKE 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
              TI  +  + D        V  P    Y  G    PC+DC     FS L  +  + GA
Sbjct: 58  --ATIGCTLRLVDMAIPHIGIVRNP---QYGYGSQVNPCIDCKVLF-FSTLRRMMEEEGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP------L 192
             + TG  +  R         RRI        +           + L     P      L
Sbjct: 112 LAIVTGEVMGQRPMSQMPKSLRRIEKLAGLEGK---------IVRPLSQQLMPEVELETL 162

Query: 193 GDM------------KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           G +            +K  +  LA+E+G+   + +     CF+        ++ +     
Sbjct: 163 GLLDREKLYAFKNRSRKPQM-QLAKELGIT--EYASPAGGCFLTDPGMARRIRHLMESPF 219

Query: 241 LEGDIVHLNGQILGR 255
            E D   +   ++GR
Sbjct: 220 EEMDEATVRLSMIGR 234


>gi|296120436|ref|YP_003628214.1| GMP synthase, large subunit [Planctomyces limnophilus DSM 3776]
 gi|296012776|gb|ADG66015.1| GMP synthase, large subunit [Planctomyces limnophilus DSM 3776]
          Length = 525

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 68/202 (33%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+  +SGGVDSSVVAALL    Y  IG  L          RKG C   +      R 
Sbjct: 227 NSRVICGLSGGVDSSVVAALL----YKAIGSQLSCIFVDNGLLRKGECEKVR-----ERF 277

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135
            +      +V D   RF +    V+ P                  R +     + V R+ 
Sbjct: 278 QNHFKTDLHVVDASHRFLSELAGVVDP---------------QQKRKIIGRVFIEVFRKE 322

Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT--QQQLCD-L 188
                 A  LA G      +  G          +          +        +QL   L
Sbjct: 323 AESITDARFLAQGTLYPDVIESGGSPDGPAATIK----------YHHNVGGLPEQLGFEL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D+ K+ VR +   +GL 
Sbjct: 373 IEPLRDLFKDEVRRMGLALGLS 394


>gi|99081216|ref|YP_613370.1| GMP synthase [Ruegeria sp. TM1040]
 gi|123077651|sp|Q1GGV8|GUAA_SILST RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|99037496|gb|ABF64108.1| GMP synthase (glutamine-hydrolyzing) [Ruegeria sp. TM1040]
          Length = 520

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV AAL+    G  +  V     +     K +    A + V   R 
Sbjct: 222 DKKVICALSGGVDSSVAAALIHEAIGDQLTCVF---VDHGLLRKNE----AEEVVGMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             D +N+     D  E F                 P         +          Q+ G
Sbjct: 274 --DHMNLQVIHADETELF--------LGELEGQSDPETKRKIIGKLFIDVFQKYADQIEG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 324 AEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L RE+GL      DS    F+ +  +         G+A+   G+I
Sbjct: 377 DEVRALGRELGLP-----DS----FIGRHPF------PGPGLAIRCPGEI 411


>gi|295696782|ref|YP_003590020.1| argininosuccinate synthase [Bacillus tusciae DSM 2912]
 gi|295412384|gb|ADG06876.1| argininosuccinate synthase [Bacillus tusciae DSM 2912]
          Length = 425

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              ++V+A SGG+D+SV  A LK    YDV+ + L                 G+D+   R
Sbjct: 2   SKPKIVLAYSGGLDTSVAIAWLKEKFEYDVVALCL-------------DVGEGKDLDFVR 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
                +  V  YV D  + F    I+P   + A  E   P     +R +    L+    +
Sbjct: 49  EKALKVGAVESYVVDARDTFAREFILPSLQANALYEGKYPLSAALSRPLISKYLVETAER 108

Query: 136 LGADVLATG 144
           +GA  +A G
Sbjct: 109 VGAVAVAHG 117


>gi|288559819|ref|YP_003423305.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288542529|gb|ADC46413.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 305

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 86/256 (33%), Gaps = 49/256 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V+VA+SGG DS V   +L   R+ +  D+  VT+             +      V 
Sbjct: 48  RGDKVLVALSGGKDSVVTLDILNSYRERHIIDLCAVTI---------DEGIAGYREDGVE 98

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A+   + + + H V  ++E F   +    A     G     C  C    ++  +    R
Sbjct: 99  IAKAHAERLGIPHKVVSFKESFGIDLDEIMAKENHRGS----CTYCGVFRRW-IINRAAR 153

Query: 135 QLGADVLATGHYI----RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             GA  +ATGH +    ++ L    +G    +       E +   F              
Sbjct: 154 DFGATKIATGHNLDDETQAILMNYLEGNTENLAKIGPKTESNDELFTVKIK--------- 204

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PL ++ ++ +   A   GLDI         C   +  +   +  I   +  +        
Sbjct: 205 PLREIPEKEIGLYAIAKGLDIHLAG-----CPYAEESFRMEISNILKDLTKD-------- 251

Query: 251 QILGRHNGIINYTIGQ 266
                H  I+  T+  
Sbjct: 252 -----HPTIMYSTLRG 262


>gi|260433934|ref|ZP_05787905.1| GMP synthase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417762|gb|EEX11021.1| GMP synthase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 519

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 79/238 (33%), Gaps = 60/238 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V     +     K +           A+ 
Sbjct: 221 DKKVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGLLRKNE-----------AQE 266

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D  N+     D  E F            +  ET        R +     + V +
Sbjct: 267 VVSMFRDNYNIQLIHADESELFLGE-----LEGVSDPETK-------RKIIGKLFIDVFQ 314

Query: 135 QL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +      GA+ LA G      +          +  +           +    ++    L 
Sbjct: 315 KHADTIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLV 367

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            PL ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 368 EPLRELFKDEVRALGRELGLPPS---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|195388470|ref|XP_002052903.1| GJ19601 [Drosophila virilis]
 gi|194149360|gb|EDW65058.1| GJ19601 [Drosophila virilis]
          Length = 684

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 29/213 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R  +   +I V +     RK    K      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALHPSQIIAVHVDNGFMRKNESEK----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +            ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVLLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
             +  PL D  K+ VRDL  ++GL  A+  + Q
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP-AELVERQ 425


>gi|125974345|ref|YP_001038255.1| hypothetical protein Cthe_1841 [Clostridium thermocellum ATCC
           27405]
 gi|256005576|ref|ZP_05430536.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|125714570|gb|ABN53062.1| conserved hypothetical protein [Clostridium thermocellum ATCC
           27405]
 gi|255990484|gb|EEU00606.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|316941503|gb|ADU75537.1| PP-loop domain protein [Clostridium thermocellum DSM 1313]
          Length = 269

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 71/205 (34%), Gaps = 46/205 (22%)

Query: 14  LDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L    K+M  V+VA SGGVDS+    LLK   +DV+G      N   A   + +    ++
Sbjct: 10  LKARLKEMESVIVAFSGGVDST---FLLKVA-HDVLG------NKVLAVTARSAAFPERE 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA        +       EE               A   P  C  C + + FS +  +
Sbjct: 60  LKDAENFASNYGIPFKTIISEELNVEGF---------AENPPNRCYLCKKEL-FSKIKRI 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G   +  G          DD    R   + ++                   +  PL
Sbjct: 110 AEDEGYKFVVEG-------SNYDDLGDYRPGLKAIEELE----------------IVSPL 146

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            +  + K  +R L++EMGL   DK 
Sbjct: 147 REVGLTKAEIRKLSKEMGLKTWDKP 171


>gi|309808435|ref|ZP_07702334.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873911|ref|ZP_07733949.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|325913133|ref|ZP_08175503.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 60-B]
 gi|308168263|gb|EFO70382.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|311090587|gb|EFQ48993.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|325477554|gb|EGC80696.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 60-B]
          Length = 517

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  ERF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAAERFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|309803793|ref|ZP_07697879.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|312872559|ref|ZP_07732627.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|308164202|gb|EFO66463.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|311091921|gb|EFQ50297.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 517

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  ERF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAAERFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|146308500|ref|YP_001188965.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudomonas mendocina ymp]
 gi|226739704|sp|A4XY17|GUAA_PSEMY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145576701|gb|ABP86233.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas mendocina ymp]
          Length = 525

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +              
Sbjct: 227 DANVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF--------- 277

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                  + + V     + EE+F + +             G T +          F    
Sbjct: 278 ------AENMGVKVIRANAEEQFLSNLAGESDPEKKRKIIGRTFIDV--------FDA-- 321

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++      LA G      +        +  + +           +    ++    L  
Sbjct: 322 EASKLDNIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 375 PLRELFKDEVRKIGLELGLP 394


>gi|224373011|ref|YP_002607383.1| GMP synthase [Nautilia profundicola AmH]
 gi|223588494|gb|ACM92230.1| GMP synthase (glutamine-hydrolyzing) [Nautilia profundicola AmH]
          Length = 511

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV AALL    G  ++ +                    + V  A +
Sbjct: 214 DNKVICALSGGVDSSVTAALLHEAIGDKLVPIF--------VDTGLLRKNEREQVEHAFK 265

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + ++V     D  E+F +    V+ P       G T +                  ++
Sbjct: 266 --NVLHVPLITVDAREKFLSKLKGVVDPEEKRKIIGHTFIEV-----------FDEEAKK 312

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              A  LA G  +   +      K      +           +         +L  PL +
Sbjct: 313 HKDAKFLAQG-TLYPDVIESVSVKGPSKTIKSHHN-------VGGLPDWMQFELIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 LFKDEVRKLGIELGLP 380


>gi|218706008|ref|YP_002413527.1| GMP synthase [Escherichia coli UMN026]
 gi|293405945|ref|ZP_06649937.1| GMP synthase [Escherichia coli FVEC1412]
 gi|298381747|ref|ZP_06991346.1| GMP synthase [Escherichia coli FVEC1302]
 gi|300898393|ref|ZP_07116736.1| GMP synthase protein [Escherichia coli MS 198-1]
 gi|331673959|ref|ZP_08374722.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA280]
 gi|226738449|sp|B7N691|GUAA_ECOLU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218433105|emb|CAR14000.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           UMN026]
 gi|291428153|gb|EFF01180.1| GMP synthase [Escherichia coli FVEC1412]
 gi|298279189|gb|EFI20703.1| GMP synthase [Escherichia coli FVEC1302]
 gi|300357933|gb|EFJ73803.1| GMP synthase protein [Escherichia coli MS 198-1]
 gi|331069232|gb|EGI40624.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA280]
          Length = 525

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +       A    F S+ A    P         V          +L  
Sbjct: 273 VLDMFG-DHFGLNIVHVPAEA---RFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|18976579|ref|NP_577936.1| argininosuccinate synthase [Pyrococcus furiosus DSM 3638]
 gi|24211504|sp|Q8U484|ASSY_PYRFU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|18892142|gb|AAL80331.1| argininosuccinate synthase [Pyrococcus furiosus DSM 3638]
          Length = 410

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           MR+V+A SGG+D+SV+  L++   G +VI VT+ +       K +               
Sbjct: 1   MRIVLAYSGGLDTSVILKLMQEKLGAEVITVTVDVGQKDDFEKIEEK------------- 47

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 V HY  D +E F    +     + A  E   P      R +    L+ V ++ G
Sbjct: 48  AYKFGAVKHYYIDAKEEFAENYVCKAIKANALYENAYPLSTALARPLIVEKLVEVAKKEG 107

Query: 138 ADVLATG 144
           A ++A G
Sbjct: 108 AGIIAHG 114


>gi|86149399|ref|ZP_01067630.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596449|ref|ZP_01099686.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563222|ref|YP_002345002.1| putative ATP-binding protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85840181|gb|EAQ57439.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191290|gb|EAQ95262.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360929|emb|CAL35730.1| putative ATP-binding protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926827|gb|ADC29179.1| putative ATP-binding protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928868|gb|EFV08130.1| thiamine biosynthesis protein:ExsB [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 327

 Score = 64.0 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 37/251 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDG----------KRRRIMCRPMDLERDQSY---FLFATTQQQLCD 187
           + TG  +  R                     ++ RPM  +              +++L  
Sbjct: 108 IITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWVDREKLEG 167

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +    G  +K  + +LA + GL+  +       C +         K+I   I  + D+  
Sbjct: 168 II---GRSRKRQL-ELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFIEFDKDMQV 218

Query: 248 LNGQIL--GRH 256
            + Q+L  GRH
Sbjct: 219 NDAQLLKYGRH 229


>gi|326560705|gb|EGE11073.1| GMP synthase [Moraxella catarrhalis 46P47B1]
          Length = 519

 Score = 64.0 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGICVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|259415755|ref|ZP_05739675.1| GMP synthase [Silicibacter sp. TrichCH4B]
 gi|259347194|gb|EEW58971.1| GMP synthase [Silicibacter sp. TrichCH4B]
          Length = 520

 Score = 64.0 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV AAL+    G  +  V     +     K +    A + V   R 
Sbjct: 222 DKKVICALSGGVDSSVAAALIHEAIGDQLTCVF---VDHGLLRKNE----AEEVVGMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             D +N+     D  E F                 P         +          Q+ G
Sbjct: 274 --DHMNLQVIHADETELF--------LGELEGQSDPETKRKIIGKLFIDVFQKYADQIEG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 324 AEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L RE+GL      DS    F+ +  +         G+A+   G+I
Sbjct: 377 DEVRALGRELGLP-----DS----FIGRHPF------PGPGLAIRCPGEI 411


>gi|134298029|ref|YP_001111525.1| PP-loop domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134050729|gb|ABO48700.1| PP-loop domain protein [Desulfotomaculum reducens MI-1]
          Length = 270

 Score = 64.0 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 55/219 (25%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V+VA SGG DS   A LL    +  G +V+ VT                    +V +A+
Sbjct: 19  KVLVAYSGGTDS---AFLLAVAVQELGDNVLAVT-----------AISPTSTKAEVAEAQ 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++   + V H +   +E      +         G T   C  C +  ++ DL  + +Q  
Sbjct: 65  QLAKELGVHHRIIHSKEMDLRDFV---------GNTAERCYIC-KYSRYFDLQEIAKQKK 114

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
              +  G          DD    R   R +               ++L  LR P+ +  +
Sbjct: 115 IPWVLDG-------SNMDDLDDYRPGNRAI---------------KELG-LRSPMQEVTL 151

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
            K  +R L+R+MGL   +K  S   C   +  Y   +  
Sbjct: 152 TKSEIRQLSRQMGLPTWNKPSSP--CLASRIPYGQEITE 188


>gi|83591695|ref|YP_425447.1| GMP synthase [Rhodospirillum rubrum ATCC 11170]
 gi|91206825|sp|Q2RXI5|GUAA_RHORT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83574609|gb|ABC21160.1| GMP synthase (glutamine-hydrolyzing) [Rhodospirillum rubrum ATCC
           11170]
          Length = 525

 Score = 64.0 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 73/194 (37%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSVVAAL+    G  ++ V   L +      R+G       V+      
Sbjct: 228 RVICGLSGGVDSSVVAALIHEAIGEQLVCV---LVDHGMM--RQGETEQVVRVFR----- 277

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           D  N++    D  E F    + V+ P A     G T                    R++ 
Sbjct: 278 DRFNITLVHRDASELFLGKLDGVVDPEAKRKIIGATF-----------IDVFDEEARKVG 326

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LA G      +          +  +           +    ++    L  PL ++ 
Sbjct: 327 GADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMALVEPLRELF 379

Query: 197 KESVRDLAREMGLD 210
           K+ VRDL RE+GL 
Sbjct: 380 KDEVRDLGRELGLP 393


>gi|156741610|ref|YP_001431739.1| PP-loop domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232938|gb|ABU57721.1| PP-loop domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 278

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+    LL +  +D +G          A+         +++  AR +   I
Sbjct: 23  LIAFSGGVDST----LLLKVAHDTLG------ERAIAATADSETYPREELEQARALATLI 72

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
              H V               +  + A   P  C  C RT+ F++L  +  +LG   +  
Sbjct: 73  GCRHIVV---------CTNELSDEHYARNQPDRCYYCKRTL-FTELQPLAAELGVAAILY 122

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESVR 201
           G          D G  R      M+                   +R PL    + K+ +R
Sbjct: 123 G------AMADDIGTHRPGHRAAMEFA-----------------VRSPLIEAGLGKQEIR 159

Query: 202 DLAREMGLDIADKS 215
           +LAR +GL   +K 
Sbjct: 160 ELARRLGLPNWNKP 173


>gi|300855847|ref|YP_003780831.1| hypothetical protein CLJU_c26710 [Clostridium ljungdahlii DSM
           13528]
 gi|300435962|gb|ADK15729.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 272

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 62/222 (27%)

Query: 5   EATRLNSLDLDKNPKDMRV-VVAMSGGVDSSVVAALLKRDGYD-----VIGVTLQLYNSR 58
           + T L   DL +N ++++  V+A SGGVDS+    LLK   +D     VI VT       
Sbjct: 2   DITNLKLEDLKENLRNIKSGVIAFSGGVDST---FLLKIA-HDILEDKVIAVT------- 50

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-- 116
                  S    +++ +A++   +I V H + + EE             Y       P  
Sbjct: 51  ----AASSTYPKRELDEAKKYAKSIGVRHLIIESEELD--------IKGYKE----NPVD 94

Query: 117 -CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            C  C + + FS L  + ++     +  G        + D G  R  M    +L      
Sbjct: 95  RCYYCKKEL-FSKLKEIAKENNVAYVLDG------ANLDDTGDFRPGMKAAKELG----- 142

Query: 176 FLFATTQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKS 215
                       +  PL   ++ KE +R+L++ +GL   +K 
Sbjct: 143 ------------ILSPLKEAELTKEDIRNLSKRIGLPTWNKP 172


>gi|158313579|ref|YP_001506087.1| argininosuccinate synthase [Frankia sp. EAN1pec]
 gi|229889876|sp|A8LE46|ASSY_FRASN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|158108984|gb|ABW11181.1| Argininosuccinate synthase [Frankia sp. EAN1pec]
          Length = 400

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G +VI +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGAETGAEVIAL------------AVDVGQGGEDLEAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            T   V   V D  E F  + + P   + A      P +   +R +    L+   +Q GA
Sbjct: 52  FTCGAVESIVVDAREEFAASFVAPAIRANALYMDRYPLISSLSRPIIVKHLVEAAKQHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           D ++ G                    +  D  R +   +          +  P+ D  M 
Sbjct: 112 DAISHG-----------------CTGKGNDQVRFEVGVMALAPGL---RVLAPVRDSGMT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E GL I     S
Sbjct: 152 RDKAIAFAEERGLPIDVSKKS 172


>gi|268323317|emb|CBH36905.1| probable NH(3)-dependent NAD(+) synthetase [uncultured archaeon]
          Length = 245

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 51/205 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDARRVC 80
           V++ MSGG+DSSV A L K                 K++      C    +D+   ++V 
Sbjct: 26  VILGMSGGLDSSVTAVLCKNA-------------FPKSTLGLIMPCFSDPEDIEHVKQVA 72

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC---NRTVKFSDLLSVTRQLG 137
           +  ++     D    F               +T    +        ++   L     +L 
Sbjct: 73  EKFDIETRKVDLSPVFL------TVLETLGSKTYDRDIATANLKPRLRMLVLYYFANKLN 126

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             V+ TG+  +S L +G   K         D   D                  PLGD+ K
Sbjct: 127 YLVVGTGN--KSELMIGYFTKY-------GDGGVD----------------LLPLGDLLK 161

Query: 198 ESVRDLAREMGLDIA--DKSDSQDI 220
             VR LA  + +  A  +   S  +
Sbjct: 162 TEVRALAEVLDIPKAIIEMPPSAGL 186


>gi|154484342|ref|ZP_02026790.1| hypothetical protein EUBVEN_02055 [Eubacterium ventriosum ATCC
           27560]
 gi|149734819|gb|EDM50736.1| hypothetical protein EUBVEN_02055 [Eubacterium ventriosum ATCC
           27560]
          Length = 263

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 66/204 (32%), Gaps = 56/204 (27%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDA 76
           K   V +A+SGGVDS             V  V +  +   S KA   K       +  DA
Sbjct: 25  KYPNVAIALSGGVDS-------------VFLVYMAKKYAKSVKAYFVKSVFQPEFEKKDA 71

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVT 133
            ++C  + V   + +  +   N ++           T  P   C  C + V F  +L   
Sbjct: 72  EKICRQLGVDLKILN-VDVLSNKLV-----------TDNPVNRCYYCKQGV-FGTILEAA 118

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL- 192
           +  G  V+  G          DD   R  M                    Q   +  PL 
Sbjct: 119 KNDGMTVILDG------TNASDDADDRPGMKA-----------------LQEMKVLSPLR 155

Query: 193 -GDMKKESVRDLAREMGLDIADKS 215
                K  +R  ++E GL + +K 
Sbjct: 156 MCGYVKSEIRKQSKEAGLFVYNKP 179


>gi|119505204|ref|ZP_01627279.1| GMP synthase (glutamine-hydrolyzing) [marine gamma proteobacterium
           HTCC2080]
 gi|119458895|gb|EAW39995.1| GMP synthase (glutamine-hydrolyzing) [marine gamma proteobacterium
           HTCC2080]
          Length = 525

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSVVAA+L R  G  +  V +     R     +                
Sbjct: 229 RVLLGLSGGVDSSVVAAMLHRAIGDQLTCVFVDNGLLRLDEGEQVMAMF----------A 278

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + V     + E RF      V  P A   A G T +          F +    T+  G
Sbjct: 279 QNMGVRVIRANAEARFLGKLKGVSDPEAKRKAIGNTFIEV--------FDE--EATKITG 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +         +L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPDDMALELVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRRIGLELGLP 394


>gi|283798480|ref|ZP_06347633.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|291073739|gb|EFE11103.1| PP-loop family protein [Clostridium sp. M62/1]
          Length = 280

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 77/227 (33%), Gaps = 50/227 (22%)

Query: 23  VVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V +A SGGVDSS    LLK        Y        ++     +    +C    D+ +AR
Sbjct: 21  VCLAFSGGVDSS---LLLKLACDSAAKYHTT-----VWAVTFDTMLHPAC----DMENAR 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV   +N SH V   +E  +  +                C  C R + FSDL     + G
Sbjct: 69  RVARELNASHVVLTVDELEQEELRRNPVDR---------CYLCKRRL-FSDLKKFAEEKG 118

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +  G          DD    R   R +         L   +   LC        M K
Sbjct: 119 CSTILDG-------TNEDDLHVYRPGIRALRE-------LGIVSPLALC-------GMTK 157

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           + V++LA  +G+  A +  +   C   +  Y   V         EG+
Sbjct: 158 QEVKELAARLGISAASRPSTP--CMATRLPYGAEVSYELLKRIEEGE 202


>gi|153808320|ref|ZP_01960988.1| hypothetical protein BACCAC_02613 [Bacteroides caccae ATCC 43185]
 gi|149129223|gb|EDM20439.1| hypothetical protein BACCAC_02613 [Bacteroides caccae ATCC 43185]
          Length = 435

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 34/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG      ++              +  D   V
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKA----IG------DNLVCVHVNHGLMRKGESEDVVEV 189

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
             + +  +    D        V   F    A  E P     +  +  ++        R+L
Sbjct: 190 FSNQLKANLIYLD--------VTDRFLDKLAGVEDPEQKRKIIGSEFIRV--FEEEARKL 239

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G D L  G        + + G +   M +           +    +     L  PL  +
Sbjct: 240 DGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFQLVEPLRQL 289

Query: 196 KKESVRDLAREMGLD 210
            K+ VR    E+GL 
Sbjct: 290 FKDEVRACGLELGLP 304


>gi|87119585|ref|ZP_01075482.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinomonas sp. MED121]
 gi|86165061|gb|EAQ66329.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinomonas sp. MED121]
          Length = 525

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 27/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +   D +V++A+SGGVDSSVVAALL +  G  +  V                     D
Sbjct: 221 MREQVGDKQVLLALSGGVDSSVVAALLHKAIGDQLTCVF---------VDNGLLRLNEGD 271

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              A    + + V     D E+ F + +                 +  N  +        
Sbjct: 272 QVMAMF-AENMGVKVIRVDAEDLFLSRLKGEADPEAKRK------IIGNSFI--EIFDEE 322

Query: 133 TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + +L   + LA G      +        +  + +           +         +L  P
Sbjct: 323 SSKLNEIEFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMELVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L   +GL 
Sbjct: 376 LRELFKDEVRKLGLALGLP 394


>gi|283956644|ref|ZP_06374123.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791893|gb|EFC30683.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 511

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V+ A+SGGVDSSVVAALL    K     VI V            R G     + ++   
Sbjct: 217 KVLCAVSGGVDSSVVAALLASAIKEQ---VIVVF-----VDNGLLRSGEKEQVEFMFK-- 266

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
              +T+ +     D  E F         S  A    P     +  N  +         ++
Sbjct: 267 ---NTLGIDLISIDASEIF--------LSRLANVRDPEQKRKIIGNTFI--EVFEEEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKYLAQGTLYTDIIESSVIGVSKTI--KSHHN-------VGGLPEKMNLKLIEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRALGLELGLS 380


>gi|240102131|ref|YP_002958439.1| NAD synthetase [Thermococcus gammatolerans EJ3]
 gi|239909684|gb|ACS32575.1| NH(3)-dependent NAD synthetase (nadE) [Thermococcus gammatolerans
           EJ3]
          Length = 254

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 49/192 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS+  A L  +  G + V+G+ +  YN+             QDV DAR VC
Sbjct: 29  VVIGISGGVDSATTAYLAVKALGRERVLGLIMPYYNN-------------QDVDDARLVC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC--NRTVKFSDLLSVTRQLGA 138
            ++ +           R   I P   S+ AG    P      N   +   +L        
Sbjct: 76  SSLGIEC---------REIGIKPIVDSFVAGLGFQPDKRSLGNIMSRTRMVLLYAHANAK 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + L  G   RS    G             D   D +                PL ++ K 
Sbjct: 127 NYLVLGTGNRSEFLTG------YFTKWG-DGASDYA----------------PLINLYKT 163

Query: 199 SVRDLAREMGLD 210
            V ++A+ +G+ 
Sbjct: 164 EVWEVAKLLGVP 175


>gi|325969442|ref|YP_004245634.1| exsB protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708645|gb|ADY02132.1| exsB protein [Vulcanisaeta moutnovskia 768-28]
          Length = 495

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 36/214 (16%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+V  SGG+DS+  A  LLK  GYDV  +    Y  R  ++   +          +R
Sbjct: 251 KRRVLVIASGGLDSTTAATYLLK-QGYDVALLHF-NYGHRAETQEDRA---------IKR 299

Query: 79  VCDTINVSHYVFDYEERFRNAV----------IVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + +  NV  +  +    F   V          I          E     V     V  + 
Sbjct: 300 IAEFHNVPLFEVNM--DFFKIVRHSPLLGDGEINRVDEGREGAEFAHEWVPARNFVFIAL 357

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
             ++    G D +ATG  +       D+      +              +A    +  +L
Sbjct: 358 ATAIAEAYGYDYIATGINLEESGAYPDNEMEFIRLL--------NRVMPYAVGPNKHVEL 409

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
             P+G + K  +      +GL++         C+
Sbjct: 410 IMPVGHLVKHEIV----RLGLEVDAPLHLTWSCY 439


>gi|326571824|gb|EGE21830.1| GMP synthase [Moraxella catarrhalis BC7]
          Length = 519

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
            +    L     + +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G 
Sbjct: 209 EMRIEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGDQLTCVF---VDNGLLRLNEGD 265

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                     +   + + +     D E RF NA          AG +     +  R +  
Sbjct: 266 QVM-------QMFAENMGICVIRADSEARFLNA---------LAGVS---DPEAKRKIIG 306

Query: 127 SDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + V     R+L G   LA G      +      + +  + +           +    
Sbjct: 307 REFIEVFSEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL D+ K+ VR L   +G+ 
Sbjct: 360 DDLAFELVEPLRDLFKDEVRKLGVALGIP 388


>gi|209885588|ref|YP_002289445.1| glutamine-hydrolyzing GMP synthase [Oligotropha carboxidovorans
           OM5]
 gi|226739651|sp|B6JHM4|GUAA_OLICO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|209873784|gb|ACI93580.1| glutamine-hydrolyzing GMP synthase [Oligotropha carboxidovorans
           OM5]
          Length = 531

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 78/262 (29%), Gaps = 59/262 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDS+V A L+    G  +  V                      + +A  
Sbjct: 233 QGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVF--------------VDHGLLRMAEAET 278

Query: 79  VC----DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D  N+     D  + F      V  P       G                    
Sbjct: 279 VVSLFRDHYNIPLVHVDASKTFLGELAGVTDPELKRKTIGRLF-----------IDVFDE 327

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +++ GAD LA G      +          +  +           +     +    L  
Sbjct: 328 EAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMKMKLVE 380

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHL 248
           PL ++ K+ VR L RE+GL            FV +  +         G+A+   G+I   
Sbjct: 381 PLRELFKDEVRALGRELGLPDV---------FVGRHPF------PGPGLAIRCPGEI-TP 424

Query: 249 NGQILGRHNGIINYTIGQRRGL 270
               + R    I     +R GL
Sbjct: 425 EKLDILRQADAIYIEEIRRAGL 446


>gi|56479231|ref|YP_160820.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Aromatoleum aromaticum EbN1]
 gi|81356291|sp|Q5NYE5|GUAA_AZOSE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56315274|emb|CAI09919.1| GMP synthase [Aromatoleum aromaticum EbN1]
          Length = 521

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSVVAALL R  G  +  V +                    + +A +V  
Sbjct: 226 VILGLSGGVDSSVVAALLHRAIGEQLTCVFVDN--------------GLLRLNEAEQVML 271

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
                + V     D  E+F           +  G   +   +  R +   + + V     
Sbjct: 272 TFARNLGVKVIHVDATEQFM---------GHLKG---VSDPEAKRKIIGREFVEVFQAEA 319

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +L  A  LA G      +        +    +           +    +     L  PL
Sbjct: 320 NKLPNAKWLAQGTIYPDVIESAGSKTGKAHTIKSHHN-------VGGLPETLNLKLLEPL 372

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR+L   +GL 
Sbjct: 373 RELFKDEVRELGIALGLP 390


>gi|309809216|ref|ZP_07703086.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170450|gb|EFO72473.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 517

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIDMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  +RF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAADRFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|309804587|ref|ZP_07698652.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165979|gb|EFO68197.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 512

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 199 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 255

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  ERF +           AG T  P  + 
Sbjct: 256 RKNEAEQVMA-------ALNKELGINIIKVDAAERFLSK---------LAGVT-EP--ER 296

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 297 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 354

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 355 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 381


>gi|240102208|ref|YP_002958516.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3]
 gi|239909761|gb|ACS32652.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3]
          Length = 276

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 13  DLDKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +LD+  K+  + +VA SGG DS V   L K   Y V           +A        A +
Sbjct: 44  ELDELMKNVDKAIVAYSGGKDSVVALYLAKEV-YKV--------PELEAVMIDHGLMAEE 94

Query: 72  DVYDARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            + +ARR+ + + V   V   DY + FRNA+          G++  PC  C+R      L
Sbjct: 95  AIENARRIAEHLGVPFRVLRYDYSDIFRNAL--------LKGQS--PCRACSRRT-MEKL 143

Query: 130 LSVTRQLGADVLATGH 145
                + G   + TGH
Sbjct: 144 RKYAIRKGYRYIITGH 159


>gi|237712767|ref|ZP_04543248.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409743|ref|ZP_06086281.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|294645358|ref|ZP_06723069.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|298483134|ref|ZP_07001314.1| GMP synthase, C- domain protein [Bacteroides sp. D22]
 gi|229447179|gb|EEO52970.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352396|gb|EEZ01498.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|292639296|gb|EFF57603.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|295084597|emb|CBK66120.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Bacteroides xylanisolvens XB1A]
 gi|298270651|gb|EFI12232.1| GMP synthase, C- domain protein [Bacteroides sp. D22]
          Length = 435

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V                     +  D   
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH-----------VNHGLMRKGESEDVVE 188

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
           V  + +  +    D        V   F +  A  E P     +     ++        R+
Sbjct: 189 VFSNQLKANLIYVD--------VTDRFLNKLAGVEDPEQKRKIIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFELVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGLELGLP 304


>gi|169833085|ref|YP_001693635.1| argininosuccinate synthase [Streptococcus pneumoniae Hungary19A-6]
 gi|229889897|sp|B1I814|ASSY_STRPI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|168995587|gb|ACA36199.1| argininosuccinate synthase [Streptococcus pneumoniae Hungary19A-6]
          Length = 398

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|168487061|ref|ZP_02711569.1| argininosuccinate synthase [Streptococcus pneumoniae CDC1087-00]
 gi|183570007|gb|EDT90535.1| argininosuccinate synthase [Streptococcus pneumoniae CDC1087-00]
          Length = 398

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|146295195|ref|YP_001178966.1| NAD+ synthetase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145408771|gb|ABP65775.1| NH(3)-dependent NAD(+) synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 540

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLAVEALGPENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DA+ + + + +   ++  E+ F+
Sbjct: 328 SIKDAKSLAENLGIEFRIYPIEDVFK 353


>gi|283477583|emb|CAY73499.1| GMP synthase [Erwinia pyrifoliae DSM 12163]
          Length = 534

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 236 DDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEAEQVMEMFG-------- 287

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E RF +          A   T  P  +  R +     + V 
Sbjct: 288 -------DHFGLNIIHVAAENRFLD----------ALAGTDEP--EAKRKIIGRVFVEVF 328

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +          LA G      +        +  + +           +    ++    L
Sbjct: 329 DEKATKLSDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 381

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL ++ K+ VR +  E+GL  A
Sbjct: 382 VEPLKELFKDEVRKIGLELGLPHA 405


>gi|187735243|ref|YP_001877355.1| GMP synthase, large subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425295|gb|ACD04574.1| GMP synthase, large subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 507

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 28/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   + +VV  +SGGVDS+V+A LL   G     V ++      A           +
Sbjct: 205 EIRERVGNRQVVCGVSGGVDSTVLAVLLHEAG-----VNMR------AIFVDNGLLRKNE 253

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             + R     +NV     D  ERF             A        +  R +     + V
Sbjct: 254 AEEVRANFARMNVEIETVDASERF------------LAALDGESDPEKKRRIIGGLFIDV 301

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP 191
                 D +     +       D  +          + +     +    + Q    +  P
Sbjct: 302 ----FWDAVGDAEMLAQGTLYPDVIESASNAKSKASVIKTHHNRVERVLELQAQGKVLEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   MG+ 
Sbjct: 358 LAELFKDEVRELGASMGIP 376


>gi|242399734|ref|YP_002995159.1| NH(3)-dependent NAD(+) synthetase [Thermococcus sibiricus MM 739]
 gi|259511199|sp|C6A5B5|NADE_THESM RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|242266128|gb|ACS90810.1| NH(3)-dependent NAD(+) synthetase [Thermococcus sibiricus MM 739]
          Length = 254

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 49/194 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDS+ VA L  R  G + V+G+ +                  +DV DA  VC
Sbjct: 29  VILGISGGVDSATVAYLAARAIGKEKVLGLVM-------------PYHINRDVEDALLVC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTRQLGA 138
           + + +++ V +         I    + +              N   +   +L        
Sbjct: 76  NNLGINYKVIN---------IKSIVNEFEKNLDFELNNVSRGNIMSRTRMILLYAHANSK 126

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + L  G   RS    G             D   D +                PL ++ K 
Sbjct: 127 NYLVLGTSNRSEFLTG------YFTKWG-DSASDYA----------------PLINLYKT 163

Query: 199 SVRDLAREMGLDIA 212
            V ++AR +G+   
Sbjct: 164 EVWNIARILGVPNE 177


>gi|170017521|ref|YP_001728440.1| argininosuccinate synthase [Leuconostoc citreum KM20]
 gi|229889880|sp|B1MZP4|ASSY_LEUCK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|169804378|gb|ACA82996.1| Argininosuccinate synthase [Leuconostoc citreum KM20]
          Length = 410

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GYDVI V L +    K                A +V  
Sbjct: 4   KLVLAYSGGLDTSVAIPWLKEKGYDVIAVVLNVGQHGKDM--------VAIQEKALKVGA 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           + ++   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A  
Sbjct: 56  SQSI---VIDAQAEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENEAVA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|194759139|ref|XP_001961807.1| GF15152 [Drosophila ananassae]
 gi|190615504|gb|EDV31028.1| GF15152 [Drosophila ananassae]
          Length = 680

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSV AALL+R  Y   +I V +     RK    K             R 
Sbjct: 230 KVLLLVSGGVDSSVCAALLRRALYPNQIIAVHVDNGFMRKDESEK-----------VERS 278

Query: 80  CDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  ++
Sbjct: 279 LREIGIELIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFVKV 336

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC------D 187
             DV+A    ++    +   G  R  +            ++          +        
Sbjct: 337 TNDVVAE-LKLKPEDVLLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNAGR 395

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
           +  PL D  K+ VRDL  ++GL   +  + Q
Sbjct: 396 VVEPLCDFHKDEVRDLGNDLGLP-PELVERQ 425


>gi|134301919|ref|YP_001121888.1| GMP synthase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|226739624|sp|A4IXW6|GUAA_FRATW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|134049696|gb|ABO46767.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 516

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|254372829|ref|ZP_04988318.1| GMP synthetase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570556|gb|EDN36210.1| GMP synthetase [Francisella novicida GA99-3549]
          Length = 516

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|146312639|ref|YP_001177713.1| GMP synthase [Enterobacter sp. 638]
 gi|226738453|sp|A4WD82|GUAA_ENT38 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145319515|gb|ABP61662.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter sp. 638]
          Length = 525

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
           V D     H+  +            F ++ A    P       R +     + V      
Sbjct: 273 VMDMFG-DHFGLNIVHVEGE---ERFLTALAGENDPE----AKRKIIGRVFVEVFDEQAL 324

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L     LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 RLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|115314848|ref|YP_763571.1| GMP synthase [Francisella tularensis subsp. holarctica OSU18]
 gi|156502497|ref|YP_001428562.1| GMP synthase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290953829|ref|ZP_06558450.1| GMP synthase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312840|ref|ZP_06803572.1| GMP synthase [Francisella tularensis subsp. holarctica URFT1]
 gi|122325137|sp|Q0BLV0|GUAA_FRATO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739621|sp|A7NCA3|GUAA_FRATF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115129747|gb|ABI82934.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253100|gb|ABU61606.1| GMP synthase(glutamine-hydrolyzing) protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 516

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|166364457|ref|YP_001656730.1| GMP synthase [Microcystis aeruginosa NIES-843]
 gi|166086830|dbj|BAG01538.1| GMP synthetase [Microcystis aeruginosa NIES-843]
          Length = 541

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG       +++    
Sbjct: 237 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLMQIFN---- 288

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +  ++     +  ERF   V                    +  ++       + +LG  
Sbjct: 289 -EQFHIRVEYVNARERFLAQVAGVTDPEEKRRR------IGHEFIQV--FEEESNRLGPF 339

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +   + +    +     L  PL  + K+
Sbjct: 340 DYLAQGTLYPDVIESADSNVDPKTGERVAVKIKSH-HNVGGLPKNLRFKLVEPLRKLFKD 398

Query: 199 SVRDLAREMGLD 210
            VR L R +GL 
Sbjct: 399 EVRKLGRSIGLP 410


>gi|159905707|ref|YP_001549369.1| NAD+ synthetase [Methanococcus maripaludis C6]
 gi|159887200|gb|ABX02137.1| NAD+ synthetase [Methanococcus maripaludis C6]
          Length = 258

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 46/193 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARR 78
           VVV +SGG+DS++VA L  R  G D V GV +  +  N                    + 
Sbjct: 31  VVVGLSGGIDSALVAYLSVRAIGKDNVFGVIMPEKNSNPDDE-------------KYGKL 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V +T+ + + VFD        V+V F A  Y  G+     VD N   +            
Sbjct: 78  VAETLGIDYTVFDITP-----VLVAFGAGGYVEGKEFDRRVDANLKPRIR---------- 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                          V     ++  +       + + Y  + T    L      +G++ K
Sbjct: 123 ------------MTEVYYHANKKNYLVAGT-SNKSEIYMGYGTKYGDLGSDFLTIGNLFK 169

Query: 198 ESVRDLAREMGLD 210
             VR LA  +G+ 
Sbjct: 170 TEVRQLASYVGVP 182


>gi|157144560|ref|YP_001451879.1| GMP synthase [Citrobacter koseri ATCC BAA-895]
 gi|226738420|sp|A8AD80|GUAA_CITK8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157081765|gb|ABV11443.1| hypothetical protein CKO_00280 [Citrobacter koseri ATCC BAA-895]
          Length = 525

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
           V D     H+  +            F ++      P       R +     + V  +   
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---ERFLTALKGENDPE----AKRKIIGRVFVEVFDEEAF 324

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                  LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 RLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLK 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|14521954|ref|NP_127431.1| hypothetical protein PAB1152 [Pyrococcus abyssi GE5]
 gi|5459174|emb|CAB50660.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5]
          Length = 274

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 35/132 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGV-----TLQLYNSRKASKRKGSCCAGQDVYD 75
           + +VA SGG DS+V   L K + G DV  V      +                  Q + +
Sbjct: 54  KAIVAYSGGKDSTVALYLAKVKYGIDVEAVMVDHGFMA----------------SQAIEN 97

Query: 76  ARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           A+R+ + +NV   +   DY + FR A++          +   PC  C++      L    
Sbjct: 98  AKRIAEHLNVPLTIIKKDYSDIFREALL----------KAKSPCRKCSKRT-MEILRKYA 146

Query: 134 RQLGADVLATGH 145
            + G   + TGH
Sbjct: 147 IEHGYRYIITGH 158


>gi|212224843|ref|YP_002308079.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009800|gb|ACJ17182.1| ATPase [Thermococcus onnurineus NA1]
          Length = 323

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 25/194 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ V +SGG DS V+  LL    K+  ++++ VT+             +      V 
Sbjct: 46  KGERIAVGVSGGKDSVVLLHLLAKLQKKFPFELVAVTI---------DEGIAGYRPPSVE 96

Query: 75  DARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            ARR  + + + H+++ ++E   F     V    S+  GE    C  C    ++  L   
Sbjct: 97  IARRNAEKLGIEHHIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWRRW-LLNHA 155

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRF 190
            +++ AD LA GH +       DD  +  IM   R       ++   +     +L     
Sbjct: 156 AKEVEADKLAVGHNL-------DDEVQMFIMNILRGDIARLGRTGPYYEEIHPELVPRIK 208

Query: 191 PLGDMKKESVRDLA 204
           PL ++ ++ +   A
Sbjct: 209 PLREIPEKEIILYA 222


>gi|56708108|ref|YP_170004.1| GMP synthase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670579|ref|YP_667136.1| GMP synthase [Francisella tularensis subsp. tularensis FSC198]
 gi|224457200|ref|ZP_03665673.1| GMP synthase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370592|ref|ZP_04986597.1| GMP synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874907|ref|ZP_05247617.1| GMP synthase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597476|sp|Q5NG38|GUAA_FRATT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123359471|sp|Q14HJ0|GUAA_FRAT1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56604600|emb|CAG45652.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320912|emb|CAL09035.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568835|gb|EDN34489.1| GMP synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840906|gb|EET19342.1| GMP synthase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159308|gb|ADA78699.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 516

 Score = 63.6 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|332141955|ref|YP_004427693.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551977|gb|AEA98695.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 525

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV++ +SGGVDSSV A LL R  G ++  V      L+L  + +  +  G        
Sbjct: 227 DERVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEADQVMEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++    D E RF +    +  P     A G         N  V+     
Sbjct: 279 -------DHFGLNINRVDAEGRFLDRLKGIEDPELKRKAIG---------NEFVRV--FD 320

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L  A  LA G      +        +  + +           +    +     L 
Sbjct: 321 EEASKLENAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPEDMELGLV 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 374 EPLRELFKDEVRKIGLELGLP 394


>gi|254369376|ref|ZP_04985388.1| GMP synthase [Francisella tularensis subsp. holarctica FSC022]
 gi|157122326|gb|EDO66466.1| GMP synthase [Francisella tularensis subsp. holarctica FSC022]
          Length = 516

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|292489035|ref|YP_003531922.1| GMP synthase [Erwinia amylovora CFBP1430]
 gi|291554469|emb|CBA21985.1| GMP synthase [Erwinia amylovora CFBP1430]
 gi|312173191|emb|CBX81446.1| GMP synthase [Erwinia amylovora ATCC BAA-2158]
          Length = 534

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 236 DDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEAEQVMEMFG-------- 287

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E RF +          A   T  P  +  R +     + V 
Sbjct: 288 -------DHFGLNIIHVPAENRFLD----------ALAGTDEP--EAKRKIIGRVFVEVF 328

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +          LA G      +        +  + +           +    ++    L
Sbjct: 329 DEEATKLTEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 381

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL ++ K+ VR +  E+GL  A
Sbjct: 382 VEPLKELFKDEVRKIGLELGLPHA 405


>gi|291277423|ref|YP_003517195.1| GMP synthase [Helicobacter mustelae 12198]
 gi|290964617|emb|CBG40471.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter mustelae 12198]
          Length = 521

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 72/203 (35%), Gaps = 43/203 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD +V+ A+SGGVDSSVVA LL R  G D+I V            RKG   A Q ++   
Sbjct: 220 KDGKVLCAVSGGVDSSVVATLLYRAIGGDLIPVF-----VDTGLLRKGEREAVQSMFK-- 272

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVD-------CNRTVKFS 127
              D + V     D  E F +    V  P       GET +   +        N  +KF 
Sbjct: 273 ---DHLKVPLITVDASEIFLSRLRGVSDPEKKRKIIGETFIEVFEKEAKKHNANGEIKF- 328

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                     A        I S    G     +                +         +
Sbjct: 329 ---------LAQGTLYPDVIESVSVKGPSKTIKSHHN------------VGGLPDWMQFE 367

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR L RE+G+ 
Sbjct: 368 LIEPLRELFKDEVRALGRELGMP 390


>gi|315425346|dbj|BAJ47012.1| NH(3)-dependent NAD(+) synthetase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 278

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 55/197 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDSSVVAAL  R   G  ++G+ +                  QDV DA+ + +
Sbjct: 43  VLGLSGGVDSSVVAALCARAVPGEKILGLIM-----------PTGFTPAQDVADAQALAE 91

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYA------AGETPLPCVDCN--RTVKFSDLLSVT 133
            + +S              I P    YA        ET       N    ++ + L    
Sbjct: 92  KLGISTRHIP---------IDPIVQRYAEQLGVGMDETGARMAYANLRARIRMTLLYFHA 142

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                        +++ L VG     R  +      +    Y               P+G
Sbjct: 143 N------------LQNMLVVGT--GDRSEILLGYYTK----YGDGGVD-------ILPIG 177

Query: 194 DMKKESVRDLAREMGLD 210
            + K  VR L   +GL 
Sbjct: 178 GLYKSQVRRLGLALGLP 194


>gi|119775492|ref|YP_928232.1| GMP synthase [Shewanella amazonensis SB2B]
 gi|226739725|sp|A1S856|GUAA_SHEAM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119767992|gb|ABM00563.1| GMP synthase (glutamine-hydrolyzing) [Shewanella amazonensis SB2B]
          Length = 525

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSV A LL R  G  +  V +                    + +A++
Sbjct: 227 DDEVILGLSGGVDSSVTAMLLHRAIGERLTCVFVDN--------------GLLRLNEAKQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
           V +     H+  +            F  +      P       R +     + +  +   
Sbjct: 273 VLEMFG-DHFGLNIVHVDAEN---RFLEALKGENDPE----AKRKIIGRVFVEIFDEEAS 324

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             + A  LA G      +        +  + +           +          L  PL 
Sbjct: 325 KCVNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDMELGLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|268323620|emb|CBH37208.1| conserved hypothetical protein [uncultured archaeon]
          Length = 323

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS +   L+   G +V+ + L L  + + +   G             V 
Sbjct: 1   MKALALLSGGLDSILATKLVLDQGLEVVALQLILPFTAEKTDYAG------------AVA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +     +    +   +  P    Y  G    PC+DC+  +   +   +  ++GA+ 
Sbjct: 49  KRFEIPIIHVEAGAEYLEIIRNP---KYGYGSGMNPCIDCHSYM-LREAKRIAEEIGAEF 104

Query: 141 LATGHYIRSRLYVG 154
           + TG  +  R    
Sbjct: 105 IFTGDVLGERPMSQ 118


>gi|257783999|ref|YP_003179216.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469]
 gi|257472506|gb|ACV50625.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469]
          Length = 529

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 65/205 (31%), Gaps = 36/205 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + RV++A+SGGVDSSVVAAL+ R  G  +  V            RKG      
Sbjct: 212 EIRQKVGNGRVILALSGGVDSSVVAALVHRAIGDQLTCVF-----VNHGMLRKGEP---- 262

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                 +V C   NV       EER+      V  P       G              + 
Sbjct: 263 --EMVEQVFCKQFNVPLIHVHAEERYAELLAGVTEPEKKRRLIGTEF-----------WK 309

Query: 128 DLLSVTRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                 ++L G   LA G  Y             +    +          F         
Sbjct: 310 VFFDEAQKLDGVQFLAQGTIYPDIIESGARKTGGKAATIKSHHNL---IPFPEGVHFD-- 364

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL    K+ VR L   +GL 
Sbjct: 365 --LIEPLDHFFKDEVRALGVSLGLP 387


>gi|194878400|ref|XP_001974055.1| GG21516 [Drosophila erecta]
 gi|190657242|gb|EDV54455.1| GG21516 [Drosophila erecta]
          Length = 677

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 28/205 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R  Y   +I V +     RK    K      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALYPNQIIAVHVDNGFMRKNESEK----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +            ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVMLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VRDL  ++GL 
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP 418


>gi|319790392|ref|YP_004152025.1| protein of unknown function DUF814 [Thermovibrio ammonificans HB-1]
 gi|317114894|gb|ADU97384.1| protein of unknown function DUF814 [Thermovibrio ammonificans HB-1]
          Length = 329

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +  SGG+DS + A LL+  G+ V+GV +             S   G+D  + +++ D + 
Sbjct: 8   LLFSGGLDSVIAAKLLQDMGFKVVGVHIY------------SPLFGKDRKELQKLADILG 55

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   + +  + +   +  P    Y  G+   PC+DC   +    L  V  + GA VLATG
Sbjct: 56  IELKLVEAGDDYLQILSSP---RYGYGKNLNPCIDCKAYM-LRKLKEVAPE-GA-VLATG 109

Query: 145 HYIRSRLYVG 154
             +  R    
Sbjct: 110 EVLGQRPMSQ 119


>gi|302870926|ref|YP_003839562.1| NAD+ synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302573785|gb|ADL41576.1| NAD+ synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 540

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLATEALGKENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DA+++ + + +   V+  EE F+
Sbjct: 328 SLKDAKQLAENLGIEFRVYSIEEPFK 353


>gi|298290963|ref|YP_003692902.1| GMP synthase, large subunit [Starkeya novella DSM 506]
 gi|296927474|gb|ADH88283.1| GMP synthase, large subunit [Starkeya novella DSM 506]
          Length = 533

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 67/199 (33%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+  +SGGVDSSV A L+    G  +  V                      + +A +
Sbjct: 235 NEKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLGEAEK 280

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLSV 132
           V     D  N+     D EE F  A           G T  P V      K       + 
Sbjct: 281 VVTLFRDAYNIPLVHVDAEELFLGA---------LEGVTD-PEVKRKTIGKLFIDVFEAE 330

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +++ GA  LA G      +          +  +           +    ++    L  P
Sbjct: 331 AKKIGGAAFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEP 383

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L RE+GL 
Sbjct: 384 LRELFKDEVRALGRELGLP 402


>gi|289523153|ref|ZP_06440007.1| NAD+ synthetase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503696|gb|EFD24860.1| NAD+ synthetase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 268

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 47/193 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V  +SGG+DSSV+A L K   GYD I G+ +                  +D  +A  + 
Sbjct: 53  IVFGLSGGLDSSVLALLAKDALGYDNILGIVM------------PCESQPEDEENALLLA 100

Query: 81  DTINVSHYVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLG 137
           +   V     D    F + + I+PF           P    N    ++ + L    +  G
Sbjct: 101 ERCGVPVQKVDLTATFNSFIGILPFEKEMMK-----PLAIANVKPRLRMTTLYFFAQNCG 155

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G   +  L +G   K         D   D                  P+GD+ K
Sbjct: 156 --FLVCGASNKDELELGYFTKY-------GDSGVD----------------LLPMGDLLK 190

Query: 198 ESVRDLAREMGLD 210
             VR LA  +G+ 
Sbjct: 191 GEVRLLADHLGVP 203


>gi|332158483|ref|YP_004423762.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus sp. NA2]
 gi|331033946|gb|AEC51758.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus sp. NA2]
          Length = 273

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 32/148 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +VA SGG DS+V   L K   G DV  V   L +              + + +AR V 
Sbjct: 54  RAIVAYSGGKDSTVALYLAKEKYGIDVEAV---LVDHGFMD--------PRAIENAREVT 102

Query: 81  DTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + V   +   DY + FR A++          +   PC  C++      L     + G 
Sbjct: 103 KYLGVPLTIIKRDYSDIFREALL----------KAKSPCRKCSKRT-MEILRKYAVENGY 151

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRP 166
             + TGH +         G    ++   
Sbjct: 152 KYIITGHEL-------PFGHHPYMLMSG 172


>gi|330975919|gb|EGH75985.1| GMP synthase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 511

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 216 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 263

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V    
Sbjct: 264 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAE 308

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 309 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 361

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 362 LRELFKDEVRRLGLELGLP 380


>gi|330969055|gb|EGH69121.1| GMP synthase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 525

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|304439864|ref|ZP_07399758.1| NAD+ synthetase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371603|gb|EFM25215.1| NAD+ synthetase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 241

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 74/225 (32%), Gaps = 47/225 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV  +SGG+DS+VVAAL KR            +             A QD  DAR V + 
Sbjct: 31  VVFGLSGGLDSAVVAALCKRA-----------FKDDALGIIMPIHSAPQDEEDARLVAEN 79

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             ++    D  + F       F  S       +   +    ++ + L    +      + 
Sbjct: 80  TGINLKKVDLTKTF-----DAFMESVDETNVEMSIHNVKPRLRMTTLYYYAQSK--SYMV 132

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G    S  Y G   K         D   D                 FP+ D+ K  + +
Sbjct: 133 VGSSNYSEYYTGYFTKH-------GDSGAD----------------IFPIVDLLKTDLFE 169

Query: 203 LAREMGLD--IADKSDSQDICFVQQGK---YFDVVKRINAGIALE 242
           +A+ +GL   I DK  S  + F  Q          + ++  I  E
Sbjct: 170 MAKYLGLPEKIIDKKPSAGL-FEGQTDEDEMGFTYEELDGYIMKE 213


>gi|330950770|gb|EGH51030.1| GMP synthase [Pseudomonas syringae Cit 7]
          Length = 525

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|220934211|ref|YP_002513110.1| GMP synthase, large subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995521|gb|ACL72123.1| GMP synthase, large subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 523

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++ +SGGVDSSVV ALL +  G  +  V      L+L+   +              
Sbjct: 225 DDQVILGLSGGVDSSVVGALLHKAIGDQLTCVFVDTGLLRLHEGDQVMATF--------- 275

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                    + V     D EERF  A          AG T     +  R +     + V 
Sbjct: 276 ------AKHMGVKVIRVDAEERFLKA---------LAGVT---DPEAKRKIIGGLFVEVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +       A  LA G      +        +  + +           +    +     L
Sbjct: 318 DEEAGKLSNAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKMGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 371 VEPLRELFKDEVRKIGVELGLP 392


>gi|259907729|ref|YP_002648085.1| GMP synthase [Erwinia pyrifoliae Ep1/96]
 gi|224963351|emb|CAX54836.1| GMP synthase [glutamine-hydrolyzing] [Erwinia pyrifoliae Ep1/96]
          Length = 526

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 228 DDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEAEQVMEMFG-------- 279

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E RF +          A   T  P  +  R +     + V 
Sbjct: 280 -------DHFGLNIIHVAAENRFLD----------ALAGTDEP--EAKRKIIGRVFVEVF 320

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +          LA G      +        +  + +           +    ++    L
Sbjct: 321 DEKATKLSDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 373

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL ++ K+ VR +  E+GL  A
Sbjct: 374 VEPLKELFKDEVRKIGLELGLPHA 397


>gi|118497489|ref|YP_898539.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella tularensis subsp. novicida U112]
 gi|195536182|ref|ZP_03079189.1| GMP synthase, C- domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208779287|ref|ZP_03246633.1| GMP synthase, C- domain protein [Francisella novicida FTG]
 gi|226739623|sp|A0Q6C0|GUAA_FRATN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118423395|gb|ABK89785.1| GMP synthetase (glutamine-hydrolyzing) [Francisella novicida U112]
 gi|194372659|gb|EDX27370.1| GMP synthase, C- domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208745087|gb|EDZ91385.1| GMP synthase, C- domain protein [Francisella novicida FTG]
          Length = 516

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G+             
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGNQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|66044510|ref|YP_234351.1| GMP synthase [Pseudomonas syringae pv. syringae B728a]
 gi|75503069|sp|Q4ZX09|GUAA_PSEU2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|63255217|gb|AAY36313.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 525

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|16801260|ref|NP_471528.1| argininosuccinate synthase [Listeria innocua Clip11262]
 gi|21263434|sp|Q929S9|ASSY_LISIN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|16414708|emb|CAC97424.1| argG [Listeria innocua Clip11262]
          Length = 404

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY+VI   L         + K      +          
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVESGYEVIACCL------DVGEGKNLDFIKEKAITVGASAS 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V RQ GA  
Sbjct: 59  ------YTIDAKEEFAENFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|300362442|ref|ZP_07058618.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus gasseri JV-V03]
 gi|300353433|gb|EFJ69305.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus gasseri JV-V03]
          Length = 517

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ +   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 204 TMDDFIDMQVDEIREKVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         D       + V+    + ++RF              G T     + 
Sbjct: 261 RKDEGDQVMQALNKD-------LGVNIIRVNAQKRFLGK---------LKGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     ++L   D LA G        V + G       +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKLKDVDFLAQG---TLYTDVIESGTNTAQTIKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 -VGGLPEDMHFELIEPLRKLFKDEVRELGEKLGIP 386


>gi|163731722|ref|ZP_02139169.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter litoralis Och 149]
 gi|161395176|gb|EDQ19498.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter litoralis Och 149]
          Length = 522

 Score = 63.6 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 56/234 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC- 80
           RV+ A+SGGVDSSV A L+       IG         + +         +    A+ V  
Sbjct: 226 RVICALSGGVDSSVAAVLIHEA----IG--------DQLTCVYVDHGLMRKDESAQVVGM 273

Query: 81  --DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
             +  N+     D  + F                  +   +  R +     +       +
Sbjct: 274 FREHYNLPLIHADESDLFLGK------------LNGVSDPETKRKIIGGLFIEVFEKYAK 321

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GAD LA G      +          +  +           +    ++    L  PL 
Sbjct: 322 EIGGADFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMQLVEPLR 374

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 375 ELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 413


>gi|224372660|ref|YP_002607032.1| NAD+ synthetase [Nautilia profundicola AmH]
 gi|223589516|gb|ACM93252.1| NAD+ synthetase [Nautilia profundicola AmH]
          Length = 278

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 47/199 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+VVA L K+           L ++ KA        +   V DA ++C+  
Sbjct: 43  ICGLSGGIDSAVVAVLAKKA----------LGDNFKAFLLPSQFSSKSSVEDALKLCEKF 92

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++ H             I         G         +  ++ + L   + +LGA V+ T
Sbjct: 93  DIDHETISIAPLLNAYPID---DKVRFGN-------FSARMRMAILYDKSAELGALVIGT 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
                                      + +    + T    L     P+GD+ K  + + 
Sbjct: 143 -------------------------SNKSELLLGYGTLFGDLASALNPIGDLYKTEIFEF 177

Query: 204 AREMGL--DIADKSDSQDI 220
           A  +G+  +I +K  S D+
Sbjct: 178 AEYLGVNEEIINKPPSADL 196


>gi|254374309|ref|ZP_04989791.1| GMP synthase [Francisella novicida GA99-3548]
 gi|151572029|gb|EDN37683.1| GMP synthase [Francisella novicida GA99-3548]
          Length = 516

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G+             
Sbjct: 220 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGNQVMQVF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 269 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 315

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 316 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 369 ELFKDEVRKLGLGLGLP 385


>gi|289677927|ref|ZP_06498817.1| GMP synthase [Pseudomonas syringae pv. syringae FF5]
 gi|302185731|ref|ZP_07262404.1| GMP synthase [Pseudomonas syringae pv. syringae 642]
          Length = 525

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|114797176|ref|YP_760512.1| GMP synthase [Hyphomonas neptunium ATCC 15444]
 gi|114737350|gb|ABI75475.1| GMP synthase [Hyphomonas neptunium ATCC 15444]
          Length = 526

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 63/202 (31%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             RV+  +SGGVDSSV A L+    G  +  V      ++   S +              
Sbjct: 228 KGRVICGLSGGVDSSVAAVLIHEAIGDQLTCVYVDHGLMRAGESEQVVSLFR-------- 279

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  +  N+     D  E F              G T     +  R +     + V 
Sbjct: 280 -------EHYNIPLVHVDASELFLGQ---------LDGVT---DPEKKRKIIGGLFIDVF 320

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                ++ GAD LA G      +          +  +           +     +    L
Sbjct: 321 DAEANKIGGADFLAQGTLYPDVIESVSAIGGPSVTIKSHHN-------VGGLPARMKMKL 373

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 374 VEPLRELFKDEVRALGRELGLP 395


>gi|117926294|ref|YP_866911.1| GMP synthase [Magnetococcus sp. MC-1]
 gi|117610050|gb|ABK45505.1| GMP synthase (glutamine-hydrolyzing) [Magnetococcus sp. MC-1]
          Length = 533

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVVAALL R  G  +  V     ++      +G             
Sbjct: 235 DDKVILGLSGGVDSSVVAALLHRAIGEQLTCVF---VDNGLLRLNEGDQVMETF------ 285

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               + V     D E RF      V  P       G T +          F +     + 
Sbjct: 286 -AQNMGVKVIRVDAEARFLGKLAGVSDPEKKRKIIGHTFIE--------IFDE--EAGKI 334

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +    +           +    +     L  PL ++
Sbjct: 335 ENAKWLAQGTIYPDVVESAGTKTGKATNIKSHHN-------VGGLPEDMQLKLLEPLREL 387

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 388 FKDEVRKVGLELGLP 402


>gi|294010559|ref|YP_003544019.1| GMP synthase (glutamine-hydrolyzing) [Sphingobium japonicum UT26S]
 gi|292673889|dbj|BAI95407.1| GMP synthase (glutamine-hydrolyzing) [Sphingobium japonicum UT26S]
          Length = 519

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 47/221 (21%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQL 54
           M    AT++   D+     + RV+  +SGGVDS+V A L+    G  +  V      ++L
Sbjct: 204 MAEFRATKIA--DIRAQVGEGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRL 261

Query: 55  YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
             + +                     +   +     + EERF             AG T 
Sbjct: 262 GEAEQVVSLFR---------------EHYGIKLVHVNAEERFLGG---------LAGLT- 296

Query: 115 LPCVDCNRTVKFSDLL----SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
               +  R     + +       +++ GAD LA G      +          +  +    
Sbjct: 297 --DPEKKRKFIGGEFIAVFEEEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN 354

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                  +    ++    L  PL ++ K+ VR L RE+GL 
Sbjct: 355 -------VGGLPERMNMKLVEPLRELFKDEVRVLGRELGLP 388


>gi|269216612|ref|ZP_06160466.1| argininosuccinate synthase [Slackia exigua ATCC 700122]
 gi|269130141|gb|EEZ61223.1| argininosuccinate synthase [Slackia exigua ATCC 700122]
          Length = 410

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VV+A SGG+D+SVV   L+   G DVI +                    +D+   +
Sbjct: 9   EKQKVVLAYSGGLDTSVVLKWLQVEKGLDVIAI------------CGNVGQDEEDLEYIK 56

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +    +  ++    D  E + +  +    ++    E   P +   +R +    L+     
Sbjct: 57  QKALDMGAIASEAIDMREEYADKYLTKALAANGLYENSYPLLSALSRPLISKYLVEAAHT 116

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  +A G         G+D  R     + +D        L    +  L          
Sbjct: 117 YGAAFVAHG-----CTGKGNDQVRFETSIKALDPNL---TILAPVREWNL---------H 159

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            +E     A+E G+ +     S
Sbjct: 160 TREDEMAWAKENGVPVPVTPAS 181


>gi|325294859|ref|YP_004281373.1| NH(3)-dependent NAD(+) synthetase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065307|gb|ADY73314.1| NH(3)-dependent NAD(+) synthetase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 279

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 72/210 (34%), Gaps = 58/210 (27%)

Query: 21  MRVVVAMSGGVDSSVVA-----ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            + VV +SGGVDS++ A     AL K    ++IG+++                +   + D
Sbjct: 35  KKAVVGISGGVDSALSAFLGVMALGKE---NIIGISM-----------PYRTSSNSSIED 80

Query: 76  ARRVCDTINVSHYVFDY---EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           AR V +T+ +  +  D     + +      P A +   G             + S L   
Sbjct: 81  ARLVANTLGIEFHEIDITPQVDSYYEMF--PDADNVRRGNKMA-------RERMSILYDF 131

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GA  L  G   +S L +G              +                     PL
Sbjct: 132 AHWKGA--LVLGTSNKSELLIG------YSTRWGDGV-----------------HDINPL 166

Query: 193 GDMKKESVRDLAREMGLD--IADKSDSQDI 220
           GD+ K  V +LA  +G+   I  K  S D+
Sbjct: 167 GDLYKTQVWELAEFVGVPERIVKKKPSADL 196


>gi|323488963|ref|ZP_08094200.1| argininosuccinate synthase [Planococcus donghaensis MPA1U2]
 gi|323397355|gb|EGA90164.1| argininosuccinate synthase [Planococcus donghaensis MPA1U2]
          Length = 410

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V+A SGG+D+SV    LK +GYDV+ V L +   +     K        V       
Sbjct: 3   KKIVLAYSGGLDTSVAIPWLKGEGYDVVAVCLDIGEGKDLDFIKQKALQVGAVES----- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  Y+ D  + F +   +    ++   E   P V   +R +    L+ +    G+ 
Sbjct: 58  -------YMIDARDEFADEYALISMQAHTLYEGKYPLVSALSRPLISKKLVEIAEATGSS 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 AVAHG 115


>gi|255722577|ref|XP_002546223.1| argininosuccinate synthase [Candida tropicalis MYA-3404]
 gi|240136712|gb|EER36265.1| argininosuccinate synthase [Candida tropicalis MYA-3404]
          Length = 416

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 45/134 (33%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+VI   L                  +D   A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FLANI------------GQEEDFEAAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F   V  P   S       Y  G +    V     +K     
Sbjct: 49  KALAIGATKFVVVDVRKEFVEKVCFPAIQSNAIYENVYLLGTSLARPVIAQAQIK----- 103

Query: 131 SVTRQLGADVLATG 144
            V  + G   ++ G
Sbjct: 104 -VAEENGCFAVSHG 116


>gi|94496230|ref|ZP_01302808.1| GMP synthase [Sphingomonas sp. SKA58]
 gi|94424409|gb|EAT09432.1| GMP synthase [Sphingomonas sp. SKA58]
          Length = 523

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV+  +SGGVDS+V A L+    G  +  V      ++L  + +              
Sbjct: 225 DGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRLGEAEQVVSLFR-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
                  +   +     + E+RF             AG T     +  R     + +   
Sbjct: 277 -------EHYGIKLVHVNAEDRFLGG---------LAGLT---DPEKKRKFIGGEFIAVF 317

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +  GAD LA G      +          +  +           +    ++    L
Sbjct: 318 EEEAAKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L +E+GL 
Sbjct: 371 VEPLRELFKDEVRVLGKELGLP 392


>gi|315653965|ref|ZP_07906881.1| GMP synthase [Lactobacillus iners ATCC 55195]
 gi|315488661|gb|EFU78307.1| GMP synthase [Lactobacillus iners ATCC 55195]
          Length = 517

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  +RF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAADRFLSK---------LAGVT-EP--EK 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|62261326|gb|AAX77978.1| unknown protein [synthetic construct]
          Length = 551

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSVVAA+L +     IG  +T    ++      +G              
Sbjct: 246 KVILGLSGGVDSSVVAAILHQA----IGDQLTCIFVDTGLLRLNEGDQVMQVF------- 294

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------SVT 133
            + ++++    + + RF +A           G     C    +      L          
Sbjct: 295 AEHMDINVIRINAKNRFLDA---------LRG----ICDPEQKRKIIGKLFVDIFDEEAA 341

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +   A  LA G      +    + + +  + +           +    ++    L  PL 
Sbjct: 342 KIENAKWLAQGTIYSDVIESAGNNQSKAHVIKSHHN-------VGGLPKEMKLKLLEPLR 394

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +GL 
Sbjct: 395 ELFKDEVRKLGLGLGLP 411


>gi|323142167|ref|ZP_08077004.1| TIGR00268 family protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413359|gb|EFY04241.1| TIGR00268 family protein [Phascolarctobacterium sp. YIT 12067]
          Length = 277

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 46/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LL+          L L +   A   +      +D+ +A   C  
Sbjct: 28  VLVAFSGGVDST---FLLQ-------AAHLTLGDKALAVTARSGVVPQRDIAEAEEFCRK 77

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             + H  FD++E     V         A   P  C  C +T+ FS+ L + ++ GA    
Sbjct: 78  QGICHLYFDFDEL---QVPG------FAENPPDRCYICKKTL-FSNFLRIAQENGA---- 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
               +       DD    R   R +   + QS                PL   ++ KE +
Sbjct: 124 ----VLCEGSNMDDLGDYRPGLRALAELKVQS----------------PLRTAELTKEEI 163

Query: 201 RDLAREMGLDIADKS 215
           R L+ ++ L   DK 
Sbjct: 164 RLLSHKLQLPTWDKP 178


>gi|312880532|ref|ZP_07740332.1| N-acetyl sugar amidotransferase [Aminomonas paucivorans DSM 12260]
 gi|310783823|gb|EFQ24221.1| N-acetyl sugar amidotransferase [Aminomonas paucivorans DSM 12260]
          Length = 374

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 29/152 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ +SGGVDSS VA LL R G   + V L   +NS  A            V +   +   
Sbjct: 70  VIGLSGGVDSSYVAHLLVRHGVRPLAVHLDNGWNSELA------------VKNIENLVTK 117

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +    +V D+EE            ++    TP   +  +  +  + L     +     
Sbjct: 118 LGIDLITHVVDWEE------FRDLQLAFLRASTPDSEIPSDHAI-VALLCRTAVKHRIRF 170

Query: 141 LATG-------HYIRSRLYVGDDGKRRRIMCR 165
           + TG       H  R       D K  R + R
Sbjct: 171 MVTGRNYQTESHLPRRWSSGHLDWKYIRELNR 202


>gi|288574889|ref|ZP_06393246.1| NAD+ synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570630|gb|EFC92187.1| NAD+ synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 246

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 41/187 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVAALLKR    V G           + +       +D   A  + D+ 
Sbjct: 32  IVGLSGGIDSAVVAALLKR----VFG-------ENMLAVKMPCHSLSEDGDHADLMIDSF 80

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++     D  +     V   F    +  +  L   +    ++ + L ++ +   ++ L  
Sbjct: 81  DLPWTSVDLSD-----VYDRFTEILSLDKNSLAAANIKPRLRMTVLYALAQD--SNFLVC 133

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G   ++ L VG   K         D   D                  PL D+ K  VR++
Sbjct: 134 GTGNKAELTVGYFTKH-------GDSGAD----------------LLPLADLTKGEVREV 170

Query: 204 AREMGLD 210
           AR +G+ 
Sbjct: 171 ARFLGVP 177


>gi|82702328|ref|YP_411894.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosospira multiformis ATCC 25196]
 gi|91206811|sp|Q2Y9R9|GUAA_NITMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|82410393|gb|ABB74502.1| GMP synthase (glutamine-hydrolyzing) [Nitrosospira multiformis ATCC
           25196]
          Length = 522

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSV AAL+ R  G  +  V +                    + +A +V  
Sbjct: 227 VILGLSGGVDSSVAAALIHRAIGKQLTCVFVDN--------------GLLRLNEAEQVMD 272

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SV 132
                + V     D  E F           +  G T     +  R +   + +       
Sbjct: 273 TFSRNLGVKVIHVDASEEFL---------GHLQGIT---DPEAKRRIIGREFVEVFQREA 320

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +   A  LA G      +       ++    +           +    +     L  PL
Sbjct: 321 AKIANARWLAQGTIYPDVIESAGAKTKKANTIKSHHN-------VGGLPETLHLKLLEPL 373

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR+L   +GL 
Sbjct: 374 RELFKDEVRELGLTLGLP 391


>gi|312871538|ref|ZP_07731631.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092933|gb|EFQ51284.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 3008A-a]
          Length = 517

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  +RF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAADRFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|225849593|ref|YP_002729827.1| GMP synthase [Persephonella marina EX-H1]
 gi|225645120|gb|ACO03306.1| GMP synthase [Persephonella marina EX-H1]
          Length = 512

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 26/199 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D + + A+SGGVDSSV A L+    G ++  + +     RK  + K       
Sbjct: 208 EIRKMVGDKKAICALSGGVDSSVAAVLVHNAIGDNLTCIFVDNGLLRKGEREKVEKTFR- 266

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    D  ++   V D  ERF  A           G T     +  R +   +L  
Sbjct: 267 ---------DHFHIPLIVVDARERFLEA---------LKGVT---DPEQKRKI-IGNLFI 304

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              +  A  +    ++       D  +      +         + +    ++    L  P
Sbjct: 305 EIFEEEAKKIPDVEFLVQGTLYPDVIESVS--VKGPSAVIKTHHNVGGLPEKMNLKLIEP 362

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L +E+GL 
Sbjct: 363 LRELFKDEVRELGKELGLP 381


>gi|86605284|ref|YP_474047.1| PP-loop family protein [Synechococcus sp. JA-3-3Ab]
 gi|86553826|gb|ABC98784.1| PP-loop family protein [Synechococcus sp. JA-3-3Ab]
          Length = 274

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV+VA SGGVDSS+VA L              L     A          +D+ +A  
Sbjct: 15  KMGRVLVAYSGGVDSSLVAKLAWDQ----------LGEGALAVTAASPALLPEDLEEAIW 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLG 137
              +I + H + + +E                   P   C  C   +    L  + +  G
Sbjct: 65  QAQSIGIRHQIVETQE----------LQDPRYAANPANRCYFCKSHL-HDLLCRLAQAQG 113

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
            D +  G      L   D    R  +    +                   +R PL +  M
Sbjct: 114 YDYVVDG------LNADDLADYRPGVQAARERG-----------------VRSPLAEVGM 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  VR L+R +GL   DK 
Sbjct: 151 SKLEVRQLSRHLGLPWWDKP 170


>gi|126462403|ref|YP_001043517.1| GMP synthase [Rhodobacter sphaeroides ATCC 17029]
 gi|226739712|sp|A3PK79|GUAA_RHOS1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126104067|gb|ABN76745.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacter sphaeroides ATCC
           17029]
          Length = 518

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 74/236 (31%), Gaps = 56/236 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V                      + +A +
Sbjct: 220 DQKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLGEAEQ 265

Query: 79  VC----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D  N+     D  + F      V  P       G   +     +          
Sbjct: 266 VVTMFRDHYNMPLIHADESDLFLGALEGVSDPEVKRKTIGRLFIDVFQKH---------- 315

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  LA G      +          +  +           +    ++    L  P
Sbjct: 316 AADVGGATFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEP 368

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           L ++ K+ VR L RE+GL      +S    F+ +  +         G+A+   G+I
Sbjct: 369 LRELFKDEVRALGRELGLP-----ES----FIGRHPF------PGPGLAIRCPGEI 409


>gi|116618554|ref|YP_818925.1| argininosuccinate synthase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271246|sp|Q03W70|ASSY_LEUMM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116097401|gb|ABJ62552.1| argininosuccinate synthase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 408

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGG+D+SV    LK  GYDVI V L +    K                A +V    
Sbjct: 6   VLAYSGGLDTSVAIPWLKDKGYDVIAVVLDVGQHGKNLNEIQ--------AKALKVGAKQ 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADVLA 142
           ++   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A  +A
Sbjct: 58  SI---VIDAKAEFADKYVAPVIKANMMYEGEYPMVSALSRPLIIKKLVDIAHENDAVAIA 114

Query: 143 TG 144
            G
Sbjct: 115 HG 116


>gi|329920354|ref|ZP_08277086.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus iners SPIN
           1401G]
 gi|328936030|gb|EGG32483.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus iners SPIN
           1401G]
          Length = 517

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  +RF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAADRFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|227431943|ref|ZP_03913963.1| argininosuccinate synthase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352228|gb|EEJ42434.1| argininosuccinate synthase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 408

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGG+D+SV    LK  GYDVI V L +    K                A +V    
Sbjct: 6   VLAYSGGLDTSVAIPWLKDKGYDVIAVVLDVGQHGKNLNEIQ--------EKALKVGAKQ 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADVLA 142
           ++   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A  +A
Sbjct: 58  SI---VIDVKGEFADKYVAPVIKANMMYEGEYPMVSALSRPLIIKKLVDIAHENDAVAIA 114

Query: 143 TG 144
            G
Sbjct: 115 HG 116


>gi|225855892|ref|YP_002737403.1| argininosuccinate synthase [Streptococcus pneumoniae P1031]
 gi|225725292|gb|ACO21144.1| argininosuccinate synthase [Streptococcus pneumoniae P1031]
          Length = 139

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|188533182|ref|YP_001906979.1| GMP synthase [Erwinia tasmaniensis Et1/99]
 gi|188028224|emb|CAO96082.1| GMP synthase [glutamine-hydrolyzing] [Erwinia tasmaniensis Et1/99]
          Length = 526

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 228 DDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEAEQVMEMFG-------- 279

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E RF +          A   T  P  +  R +     + V 
Sbjct: 280 -------DHFGLNIIHVAAENRFLD----------ALAGTDEP--EAKRKIIGRVFVEVF 320

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +          LA G      +        +  + +           +    ++    L
Sbjct: 321 DEEATKLNDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 373

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL ++ K+ VR +  E+GL  A
Sbjct: 374 VEPLKELFKDEVRKIGLELGLPHA 397


>gi|148266282|ref|YP_001232988.1| thiamine biosynthesis protein [Geobacter uraniireducens Rf4]
 gi|146399782|gb|ABQ28415.1| thiamine biosynthesis protein [Geobacter uraniireducens Rf4]
          Length = 334

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 20/140 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78
             + +  +SGG+DS++   ++   G  V  +    + S   +   K S C  +    A R
Sbjct: 2   QKKALALLSGGLDSTLAVKVMLEQGIAVEAL---NFTSPFCTCTGKNSGCKSE----AVR 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
           V +  N+   V      +   V  P    +  G+   PC+DC        LL   ++   
Sbjct: 55  VAEEFNIPIKVMHKGVEYLEIVGKP---KHGYGKGMNPCIDCRIF-----LLRKAKEYMA 106

Query: 137 --GADVLATGHYIRSRLYVG 154
             GAD + TG  +  R    
Sbjct: 107 ESGADFVITGEVLGQRPMSQ 126


>gi|323343956|ref|ZP_08084183.1| argininosuccinate synthase [Prevotella oralis ATCC 33269]
 gi|323095775|gb|EFZ38349.1| argininosuccinate synthase [Prevotella oralis ATCC 33269]
          Length = 399

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VVVA SGG+D+S     L +DGYDV                     + + + +   
Sbjct: 2   EKKKVVVAFSGGLDTSYTVMKLAQDGYDVYAA-----------CANTGGFSAEQLKNNEA 50

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQ 135
               +    YV  D  + +    +              P    +  + F    +    ++
Sbjct: 51  NAYKLGAKAYVTLDVTQEYYEKSLKYMIFGNVMRNNCYPVSVSSERI-FQAIAIARYAKE 109

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 110 IGADAIAHG 118


>gi|312878522|ref|ZP_07738403.1| NAD+ synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794700|gb|EFR11148.1| NAD+ synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 540

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLATEALGRENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DA+++   + +   V+  EE F+
Sbjct: 328 SLKDAQKLASNLGIEFRVYSIEEPFK 353


>gi|312792463|ref|YP_004025386.1| nad+ synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179603|gb|ADQ39773.1| NAD+ synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 540

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K     + VV +SGG+DSSVV  L     G + V+GV +                +  
Sbjct: 279 FEKTGITKKAVVGLSGGIDSSVVCCLATEALGRENVLGVAM-----------PSRYSSEH 327

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR 97
            + DA+++   + +   V+  EE F+
Sbjct: 328 SLKDAQKLASNLGIEFRVYSIEEPFK 353


>gi|86741855|ref|YP_482255.1| argininosuccinate synthase [Frankia sp. CcI3]
 gi|119361276|sp|Q2J866|ASSY_FRASC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|86568717|gb|ABD12526.1| argininosuccinate synthase [Frankia sp. CcI3]
          Length = 400

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 68/204 (33%), Gaps = 43/204 (21%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G DV+ +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGAETGADVVAL------------AVDVGQGGEDLEAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            T   V   V D  E F  + + P   S A      P +   +R V    L++  R+ GA
Sbjct: 52  LTCGAVESIVVDAREEFAESFVAPAIKSNALYMDRYPLISSLSRPVIVRHLVAAAREHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPLGD- 194
           D +A G                          +      F      L     +  P+ D 
Sbjct: 112 DAIAHG-----------------------CTGKGNDQVRFEVGVAALAPGLSVLAPVRDS 148

Query: 195 -MKKESVRDLAREMGLDIADKSDS 217
            M ++     A E GL I     S
Sbjct: 149 GMTRDKAIAFAEERGLPIDVSKKS 172


>gi|322804435|emb|CBZ01985.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 240

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS V+  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V           +   PC  C   ++ 
Sbjct: 61  TMTGADFSPLENVCSNINVPLYI--YKTPIKEIVFD-------LRKEKNPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKELGCNKIALGHHKNDAIET 137


>gi|170758613|ref|YP_001785494.1| hypothetical protein CLK_3340 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405602|gb|ACA54013.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 240

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS V+  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V           +   PC  C   ++ 
Sbjct: 61  TMTGADFSPLENVCSNINVPLYI--YKTPIKEIVFD-------LRKEKNPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKELGCNKIALGHHKNDAIET 137


>gi|168177499|ref|ZP_02612163.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|168182225|ref|ZP_02616889.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226947389|ref|YP_002802480.1| hypothetical protein CLM_0209 [Clostridium botulinum A2 str. Kyoto]
 gi|237793484|ref|YP_002861036.1| hypothetical protein CLJ_B0204 [Clostridium botulinum Ba4 str. 657]
 gi|182671105|gb|EDT83079.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182674626|gb|EDT86587.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226842841|gb|ACO85507.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261836|gb|ACQ52869.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 240

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS V+  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V           +   PC  C   ++ 
Sbjct: 61  TMTGADFSPLENVCSNINVPLYI--YKTPIKEIVFD-------LRKEKNPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKELGCNKIALGHHKNDAIET 137


>gi|18976558|ref|NP_577915.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892117|gb|AAL80310.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 275

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 23/126 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +VA SGG DS+V   L K + YD+           +A        A Q + +A++V +
Sbjct: 55  KAIVAYSGGKDSTVALYLAKEE-YDI---------DVEAVMVDHGFMAPQAIENAKKVSE 104

Query: 82  TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +NV   +   DY E F++A++          +   PC  C+R      L     + G  
Sbjct: 105 YLNVPLTIIREDYSEIFKDALL----------KAKSPCRKCSRRT-MEALRKYALEKGYK 153

Query: 140 VLATGH 145
            + +GH
Sbjct: 154 YIISGH 159


>gi|325262735|ref|ZP_08129471.1| PP-loop family protein [Clostridium sp. D5]
 gi|324031829|gb|EGB93108.1| PP-loop family protein [Clostridium sp. D5]
          Length = 285

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 72/232 (31%), Gaps = 60/232 (25%)

Query: 23  VVVAMSGGVDSSVVAALL-------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + VA SGG DSS    LL       K+ G +V  +T+Q                 +D+  
Sbjct: 31  IAVAFSGGADSS---LLLKLACECAKKQGKNVYAMTIQ-----------TELHTLEDLNI 76

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTR 134
           A +V      S +   Y +    A I            P   C  C + + F+ +     
Sbjct: 77  AEKVAKETG-SFHEVLYVDELEEAGIE---------MNPVNRCYLCKKLL-FTKIREKAL 125

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-- 192
           Q G   +  G             +  R +                           PL  
Sbjct: 126 QRGISRILEGTNADDLTMYRPGIQAIRELRIGS-----------------------PLAE 162

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            +M K  VR LA E G+ +A++  +   C   +  Y   + R     A  G+
Sbjct: 163 AEMTKAEVRRLAAEFGISVAERPAAP--CMATRFPYGTRLDREKMKAAELGE 212


>gi|301102819|ref|XP_002900496.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101759|gb|EEY59811.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 305

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 32/194 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VVA SGGVDSS+ AAL       V  V     ++  A   + +  +   +  AR V   I
Sbjct: 33  VVAFSGGVDSSLAAAL-------VFQVFP---DTGAACIGRSAALSSVQLRQAREVASHI 82

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V                               C  C  T+ +S L  V      ++   
Sbjct: 83  GVPL---------WECHTDEAKLEGYVANQGKSCYYCKTTL-YSTLNQVAEFAWQEMQQH 132

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  I+  LY G +   +  + R           + AT  + +     PL  + K+ VRD+
Sbjct: 133 GEEIKPVLYNGTNADDQLDLTR--------VGLVAATEFEVVS----PLSGLTKQEVRDV 180

Query: 204 AREMGLDIADKSDS 217
           A+ +GL   + + S
Sbjct: 181 AKYLGLPNWNAAAS 194


>gi|242398043|ref|YP_002993467.1| GMP synthase [glutamine-hydrolyzing] subunit B [Thermococcus
           sibiricus MM 739]
 gi|242264436|gb|ACS89118.1| GMP synthase [glutamine-hydrolyzing] subunit B [Thermococcus
           sibiricus MM 739]
          Length = 313

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   + + ++A+SGGVDSS  A L     Y  IG   +L+     +           
Sbjct: 18  EIKKTVGEKKAIIALSGGVDSSTAAILA----YKAIGD--RLHAVFVNTGFLRKGEPEFV 71

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDL 129
           +   +   +   ++    D +ERF  A+             G+T                
Sbjct: 72  IKTFK---EEFGLNLIYVDAQERFFTALKGVTDPEEKRKIIGKTF-----------IDVF 117

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             V  ++ AD L  G      +      K                  +    ++    L 
Sbjct: 118 EEVANEIDADFLIQGTIAPDWIESQGKIKSHHN--------------VGGLPERLNLKLI 163

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR++A+E+GL 
Sbjct: 164 EPLRDLYKDEVREVAKELGLP 184


>gi|224538050|ref|ZP_03678589.1| hypothetical protein BACCELL_02940 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520340|gb|EEF89445.1| hypothetical protein BACCELL_02940 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 71/200 (35%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G +++ V      ++   S    +  G        
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLKAIGNNLVCVHVNHGLMRKGESEDVVEMFG-------- 191

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
                  + +  +    D        V   F +     E P     +     ++      
Sbjct: 192 -------NQLKANLIYVD--------VTDRFLTKLEGVEDPEQKRKIIGGEFIRV--FEE 234

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             R+L G D L  G        + + G +   M +           +    +    +L  
Sbjct: 235 EARKLDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVE 284

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR    E+GL 
Sbjct: 285 PLRQLFKDEVRACGLELGLP 304


>gi|56552163|ref|YP_163002.1| GMP synthase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81354934|sp|Q5NN19|GUAA_ZYMMO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56543737|gb|AAV89891.1| GMP synthase, large subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 526

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 33/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D RV+  +SGGVDSSV A L+    G  +  V            R+G      
Sbjct: 221 EIRKQVGDGRVICGLSGGVDSSVTAVLVHEAIGDQLTCVF-----VDHGLMRQGEAEQVV 275

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            ++      +   +     + E+RF      V  P       G+T               
Sbjct: 276 SLFR-----EHYGIKLVHVNAEDRFLAGLKGVTDPETKRKFIGKTF-----------IEI 319

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                +++ GAD LA G      +          +  +           +    ++    
Sbjct: 320 FEEEAKKIGGADFLAQGTLYPDVIESVSFLGGPSVTIKSHHN-------VGGLPERMNMK 372

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VRDL RE+G+ 
Sbjct: 373 LVEPLRELFKDEVRDLGRELGMP 395


>gi|302389942|ref|YP_003825763.1| NH(3)-dependent NAD(+) synthetase [Thermosediminibacter oceani DSM
           16646]
 gi|302200570|gb|ADL08140.1| NH(3)-dependent NAD(+) synthetase [Thermosediminibacter oceani DSM
           16646]
          Length = 237

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 43/186 (23%)

Query: 26  AMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
            +SGG+DS+VV AL KR   +  +G+ +                  +D  DA +V +   
Sbjct: 29  GLSGGIDSAVVGALCKRAFPENCLGLIM------------PCYSNSKDEEDAVKVAEKFG 76

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + H          + V   F +     +T       N   +              ++   
Sbjct: 77  IPHKKIVL-----DGVYDEFLN--ILDKTDNRVAVANIKPRLR------------MITLY 117

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           +Y     Y+      +  +      +    Y               PLG++ K+ VR+LA
Sbjct: 118 YYATLNNYLVVGTGNKSELTVGYFTK----YGDGGVD-------LLPLGNLVKKQVRELA 166

Query: 205 REMGLD 210
             +G+ 
Sbjct: 167 VYLGIP 172


>gi|260752318|ref|YP_003225211.1| GMP synthase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551681|gb|ACV74627.1| GMP synthase, large subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 526

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 33/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D RV+  +SGGVDSSV A L+    G  +  V            R+G      
Sbjct: 221 EIRKQVGDGRVICGLSGGVDSSVTAVLVHEAIGDQLTCVF-----VDHGLMRQGEAEQVV 275

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            ++      +   +     + E+RF      V  P       G+T               
Sbjct: 276 SLFR-----EHYGIKLVHVNAEDRFLAGLKGVTDPETKRKFIGKTF-----------IEI 319

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                +++ GAD LA G      +          +  +           +    ++    
Sbjct: 320 FEEEAKKIGGADFLAQGTLYPDVIESVSFLGGPSVTIKSHHN-------VGGLPERMNMK 372

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VRDL RE+G+ 
Sbjct: 373 LVEPLRELFKDEVRDLGRELGMP 395


>gi|90416235|ref|ZP_01224167.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2207]
 gi|90331960|gb|EAS47174.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2207]
          Length = 525

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 33/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V     ++    K +G             
Sbjct: 227 DSHVLLGLSGGVDSSVVAALLHKAIGAQLTCVF---VDNGLLRKNEGDMVMEMF------ 277

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVTR 134
             + + V     + +++F +    V  P       G T +    + ++ +K         
Sbjct: 278 -ANNMGVKVIRANAQDKFLDGLAGVSDPEKKRKVIGNTFIEIFDEESQKIK--------- 327

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
               + LA G      +        +  + +           +         +L  PL +
Sbjct: 328 --NVNFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMALELVEPLRE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 379 LFKDEVRKIGVELGLP 394


>gi|15643726|ref|NP_228774.1| hypothetical protein TM0966 [Thermotoga maritima MSB8]
 gi|222100584|ref|YP_002535152.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
 gi|4981504|gb|AAD36045.1|AE001759_9 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|221572974|gb|ACM23786.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
          Length = 268

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 43/205 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
               ++VV  SGGVDS+++A L +   G + + +T+                  +++ +A
Sbjct: 12  KSKKKLVVMFSGGVDSTLLAKLAREVLGKNAVALTI-----------DSPVIPRKEIEEA 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + + + I + H   +  E     +I            P  C  C R ++ + + +  R+ 
Sbjct: 61  KNLANLIGIRHEFIELNELKSRHLIE---------NPPDRCYLC-RKLRDNIVKNWAREN 110

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G DV+A G      L   D    R  +    +      +  F                  
Sbjct: 111 GFDVIADG------LNFSDLQDYRPGVKASTEDGIWHPFIDFEV---------------T 149

Query: 197 KESVRDLAREMGLDIADKSDSQDIC 221
           KE +R+ ++++GL   DK     +C
Sbjct: 150 KEEIREYSKKLGLPTWDKPAMACLC 174


>gi|260592846|ref|ZP_05858304.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319]
 gi|260535216|gb|EEX17833.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319]
          Length = 461

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+SGG DS V   L +++ GY+   V    +     S R    C        + +C  
Sbjct: 22  LVALSGGADS-VALLLTMRQLGYETDAVHCNFHLRGDESNRDEEYC--------QSLCKQ 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+  ++  ++             +YA     +      R +++     +   LGAD + 
Sbjct: 73  LNIPLHIAHFDTL-----------TYAEAH-KVSIEMAARELRYRYFFQLKEALGADAIC 120

Query: 143 TGHY 146
            GH+
Sbjct: 121 VGHH 124


>gi|146277904|ref|YP_001168063.1| GMP synthase [Rhodobacter sphaeroides ATCC 17025]
 gi|226739713|sp|A4WTP4|GUAA_RHOS5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145556145|gb|ABP70758.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacter sphaeroides ATCC
           17025]
          Length = 518

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 74/236 (31%), Gaps = 56/236 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V                      + +A +
Sbjct: 220 DQKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLGEAEQ 265

Query: 79  VC----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D  N+     D  + F      V  P       G   +     +          
Sbjct: 266 VVTMFRDHYNMPLIHADESDLFLGALEGVSDPEVKRKTIGRLFIDVFQKH---------- 315

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  LA G      +          +  +           +    ++    L  P
Sbjct: 316 AADVGGATFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEP 368

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           L ++ K+ VR L RE+GL      DS    F+ +  +         G+A+   G+I
Sbjct: 369 LRELFKDEVRALGRELGLP-----DS----FIGRHPF------PGPGLAIRCPGEI 409


>gi|329889248|ref|ZP_08267591.1| GMP synthase glutamine-hydrolyzing [Brevundimonas diminuta ATCC
           11568]
 gi|328844549|gb|EGF94113.1| GMP synthase glutamine-hydrolyzing [Brevundimonas diminuta ATCC
           11568]
          Length = 520

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 69/234 (29%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V                        +A++
Sbjct: 222 DAKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDTGLLRKDEAKQ 267

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLS 131
           V     +  N+     D  + F   +             G   +   D            
Sbjct: 268 VTELFREHYNIPLVHVDASKEFLGELAGISDPETKRKTIGRVFIEVFDR----------E 317

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  GA  LA G      +           + +           +          L  P
Sbjct: 318 AVKIEGAAFLAQGTLYPDVIESVSPTGGPSHVIKSHHN-------VGGLPDFMKLKLVEP 370

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           L ++ K+ VR L RE+GL  A         FV +  +          I + G+I
Sbjct: 371 LRELFKDEVRALGRELGLTDA---------FVGRHPFPG----PGLAIRIPGEI 411


>gi|259500954|ref|ZP_05743856.1| GMP synthase [Lactobacillus iners DSM 13335]
 gi|302190594|ref|ZP_07266848.1| GMP synthase [Lactobacillus iners AB-1]
 gi|309806491|ref|ZP_07700495.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|259167648|gb|EEW52143.1| GMP synthase [Lactobacillus iners DSM 13335]
 gi|308167090|gb|EFO69265.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 03V1-b]
          Length = 517

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   D+ +   + +V++ +SGGVDSSV A LL R  G  +  +     +    
Sbjct: 204 TMDDFIGMEIEDIRQTVGNKKVILGLSGGVDSSVTATLLHRAIGDQLTAIF---VDHGML 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +              +   + ++    D  +RF +           AG T  P  + 
Sbjct: 261 RKNEAEQVMA-------ALNKELGINIIKVDAADRFLSK---------LAGVT-EP--ER 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQS 174
            R +   + + V     ++L   D LA G      +  G +  K  +       L +D  
Sbjct: 302 KRKIIGKEFIEVFNEEAQKLKDIDFLAQGTLYTDVIESGTNTAKTIKSHHNVGGLPKD-- 359

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              F+  +        PL  + K+ VR L  ++GL 
Sbjct: 360 -MHFSLIE--------PLRKLFKDEVRVLGEKLGLP 386


>gi|110679988|ref|YP_682995.1| GMP synthase [Roseobacter denitrificans OCh 114]
 gi|123172371|sp|Q165N4|GUAA_ROSDO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|109456104|gb|ABG32309.1| GMP synthase putative [Roseobacter denitrificans OCh 114]
          Length = 522

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 56/234 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC- 80
           RV+ A+SGGVDSSV A L+       IG         + +         +    A+ V  
Sbjct: 226 RVICALSGGVDSSVAAVLIHEA----IG--------DQLTCVYVDHGLMRKDESAQVVGM 273

Query: 81  --DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
             +  N+     D  + F            +  ET        R +     +       +
Sbjct: 274 FREHYNLPLIHADESDLFLGK-----LEGVSDPETK-------RKIIGGLFIEVFEKYAK 321

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GAD LA G      +          +  +           +    ++    L  PL 
Sbjct: 322 EIGGADFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMQLVEPLR 374

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 375 ELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 413


>gi|70985853|ref|XP_748432.1| GMP synthase [Aspergillus fumigatus Af293]
 gi|74668392|sp|Q4WFT3|GUAA_ASPFU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|66846061|gb|EAL86394.1| GMP synthase [Aspergillus fumigatus Af293]
 gi|159128433|gb|EDP53548.1| GMP synthase [Aspergillus fumigatus A1163]
          Length = 557

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 67/203 (33%), Gaps = 40/203 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
            V+ A+SGGVDS+V A L+K      IG      +   A      C    +    A  + 
Sbjct: 232 HVLGAVSGGVDSTVAAKLMKEA----IG------DRFHAVLVNNGCMRLNECETVAETLN 281

Query: 81  DTINVSHYVFDYEERFRN---AVIVP----------FASSYAAGETPLPCVDCNRTVKFS 127
             + ++  V D  +RF +    V  P          F   +      +  +  N   K  
Sbjct: 282 KHLGINLTVVDASKRFLDGLKGVTDPEKKRMFIGATFIDVFEEEAEKIEALAENSGAKVK 341

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L  T             I S  + G     +         +R          + Q   
Sbjct: 342 WFLQGTL--------YPDVIESISFKGPSATIKTHHNVGALPKR--------MIEGQGMK 385

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR L RE+G+ 
Sbjct: 386 LIEPLRELFKDEVRQLGRELGIA 408


>gi|303258081|ref|ZP_07344089.1| GMP synthase [Burkholderiales bacterium 1_1_47]
 gi|330998706|ref|ZP_08322435.1| GMP synthase domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|302859100|gb|EFL82183.1| GMP synthase [Burkholderiales bacterium 1_1_47]
 gi|329576445|gb|EGG57957.1| GMP synthase domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 521

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L+   +                A
Sbjct: 226 VILGLSGGVDSSVTAALIHRAIGDQLSCVFVDNGLLRLHEREQV---------------A 270

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
           +   D + +   V D  +RF +A          +G T     +  R +     + V    
Sbjct: 271 QTFRDNMGMKLIVVDASDRFMDA---------LSGVT---DPEAKRKIIGRLFVEVFQEE 318

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L  A  LA G      +       ++    +           +          L  P
Sbjct: 319 AEKLQNAKWLAQGTIYPDVIESNGAKTKKAQTIKSHHN-------VGGLPDTLHLKLLEP 371

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +GL 
Sbjct: 372 LRELFKDEVRELGIALGLP 390


>gi|77463571|ref|YP_353075.1| GMP synthase [Rhodobacter sphaeroides 2.4.1]
 gi|221639412|ref|YP_002525674.1| GMP synthase [Rhodobacter sphaeroides KD131]
 gi|91206826|sp|Q3J210|GUAA_RHOS4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800112|sp|B9KT27|GUAA_RHOSK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77387989|gb|ABA79174.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacter sphaeroides
           2.4.1]
 gi|221160193|gb|ACM01173.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodobacter sphaeroides KD131]
          Length = 518

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 74/236 (31%), Gaps = 56/236 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V                      + +A +
Sbjct: 220 DQKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------------VDHGLLRLGEAEQ 265

Query: 79  VC----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D  N+     D  + F      V  P       G   +     +          
Sbjct: 266 VVKMFRDHYNMPLIHADESDLFLGALEGVSDPEVKRKTIGRLFIDVFQKH---------- 315

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GA  LA G      +          +  +           +    ++    L  P
Sbjct: 316 AADVGGATFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEP 368

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           L ++ K+ VR L RE+GL      +S    F+ +  +         G+A+   G+I
Sbjct: 369 LRELFKDEVRALGRELGLP-----ES----FIGRHPF------PGPGLAIRCPGEI 409


>gi|39995542|ref|NP_951493.1| hypothetical protein GSU0434 [Geobacter sulfurreducens PCA]
 gi|39982305|gb|AAR33766.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298504543|gb|ADI83266.1| thiamin biosynthesis protein ThiI-related adenine nucleotide alpha
           hydrolase superfamily protein [Geobacter sulfurreducens
           KN400]
          Length = 334

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 22/141 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV--YDAR 77
             + +  +SGG+DS++   ++   G +V  +          +    +C         +A 
Sbjct: 2   KRKALALLSGGLDSTLAVKVMLEQGIEVEAL--------NFTSPFCTCTGKNAGCKSEAI 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           RV +   +   V      +   V  P    +  G+   PCVDC        LL   ++  
Sbjct: 54  RVAEEFGIPIKVMHKGVDYLEVVRAP---RHGYGKGMNPCVDCRIF-----LLRKAKEYM 105

Query: 137 ---GADVLATGHYIRSRLYVG 154
              GAD + TG  +  R    
Sbjct: 106 AESGADFVITGEVLGQRPMSQ 126


>gi|261403835|ref|YP_003248059.1| exsB protein [Methanocaldococcus vulcanius M7]
 gi|261370828|gb|ACX73577.1| exsB protein [Methanocaldococcus vulcanius M7]
          Length = 232

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 37/202 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+V   + K  GY++  +T             G     +++  A+++C
Sbjct: 1   MKAITVLSGGLDSTVATLIAKDRGYEMTAITF----------NYGQKAVKREINSAKKIC 50

Query: 81  DTINVSHYVFD--YEERF-------RNAV---IVPFASSYAAGETPLPCVDCNRTVK-FS 127
           + + + H V D  + ++F          +    +    S  A +T        R V  FS
Sbjct: 51  EILGIKHIVVDLPFVKQFGKSSLITEKEIPTLKMNELDSEKAFDTMRAVWVPARNVIMFS 110

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   LGA+ +  G          ++G     +  P +       F        L  
Sbjct: 111 IASGFAESLGAEKIFIG-------INKEEG-----ITFPDNTIEFVEAFNRVLEYGTLNK 158

Query: 188 LRF--PLGDMKKESVRDLAREM 207
           ++   PL D  KE +  L  E+
Sbjct: 159 VKIEAPLYDKTKEEIVKLGAEL 180


>gi|254449475|ref|ZP_05062912.1| GMP synthase (glutamine-hydrolyzing) [Octadecabacter antarcticus
           238]
 gi|198263881|gb|EDY88151.1| GMP synthase (glutamine-hydrolyzing) [Octadecabacter antarcticus
           238]
          Length = 499

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 79/239 (33%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDSSV AALL    G  +  V      L+L  +                
Sbjct: 201 DKQVICGLSGGVDSSVTAALLHEAIGDQLTCVFVDHGLLRLNEADDVVAMFR-------- 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D +N+     D +E F          +      P       R +     + V 
Sbjct: 253 -------DNMNLKVIYADEKELF--------LGALEGQSDPE----TKRKIIGGLFIDVF 293

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ++      GA+ LA G      +          +  +           +    ++    L
Sbjct: 294 QKYANEIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKL 346

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 347 VEPLRELFKDEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 390


>gi|170767217|ref|ZP_02901670.1| GMP synthase (glutamine-hydrolyzing) [Escherichia albertii TW07627]
 gi|170123551|gb|EDS92482.1| GMP synthase (glutamine-hydrolyzing) [Escherichia albertii TW07627]
          Length = 525

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           V D            +RF   +I       F S+ A    P       R +     + V 
Sbjct: 273 VMDMFG---------DRFGLNIIHVPAEDRFLSALAGEHDPE----AKRKIIGRVFVEVF 319

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +          LA G      +        +  + +           +    ++    L
Sbjct: 320 DEEALKVEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLKELFKDEVRKIGLELGLP 394


>gi|153953103|ref|YP_001393868.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium kluyveri DSM 555]
 gi|219853754|ref|YP_002470876.1| hypothetical protein CKR_0411 [Clostridium kluyveri NBRC 12016]
 gi|226738426|sp|A5N5D9|GUAA_CLOK5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800093|sp|B9DYY7|GUAA_CLOK1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|146345984|gb|EDK32520.1| GuaA [Clostridium kluyveri DSM 555]
 gi|219567478|dbj|BAH05462.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 510

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ AMSGGVDSSV A ++ +  G  +  +     +     K +G       V D  +
Sbjct: 215 DKKVICAMSGGVDSSVAAMIVHKAVGKQLTCIF---VDHGLLRKDEGD-----QVEDIFK 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                N++    + E+RF   +                 +     ++        ++LG 
Sbjct: 267 --KQFNMNFIRVNAEKRFLQKLKDISDPEKKRK------IIGEEFIRV--FEEEAKKLGE 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A          V + G       +           +    +     L  PL ++ K+
Sbjct: 317 --IAFLVQGTIYPDVVESGLGTSATIKSHHN-------VGGLPEDMDFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|326692751|ref|ZP_08229756.1| argininosuccinate synthase [Leuconostoc argentinum KCTC 3773]
          Length = 409

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGG+D+SV    LK  GYDVI V L +    K                A +V  + 
Sbjct: 6   VLAYSGGLDTSVAIPWLKEKGYDVIAVVLNVGQHGKDMDMIQ--------AKALKVGASQ 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADVLA 142
           ++   V D +  F    + P   +    E   P V   +R +    L+ +  +  A  +A
Sbjct: 58  SI---VIDAQAEFATDYVAPVIKANMLYEGEYPLVSALSRPLIIKKLVDIAHENNAVAIA 114

Query: 143 TG 144
            G
Sbjct: 115 HG 116


>gi|323141405|ref|ZP_08076296.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414154|gb|EFY04982.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Phascolarctobacterium sp. YIT 12067]
          Length = 517

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 38/206 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSR--KASKRKGSCCA 69
           +L +   D +V+ A+SGGVDSSV AA+L +  G  +  V     +    + ++R+  C  
Sbjct: 211 ELKERIGDGKVLCALSGGVDSSVCAAMLAKAIGKQLTCVF---VDHGLLRKNEREEVCAV 267

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---- 125
             +           +++    D  ERF +           AG T     +  R +     
Sbjct: 268 FGEGG-------QFDINFICVDARERFYSK---------LAGVT---APEGKRKIIGEEF 308

Query: 126 FSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                   +++GA D LA G      +  G  G+            +             
Sbjct: 309 IRVFEEEAKKIGAVDYLAQGTIYPDVVESGLGGE--------SATIKSHHNVGGLPDFVD 360

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             ++  PL D+ K+ VR   RE+GL 
Sbjct: 361 FKEIVEPLRDLFKDEVRQSGRELGLP 386


>gi|312622559|ref|YP_004024172.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203026|gb|ADQ46353.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 276

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            +A SGGVDS+     L +  YDV+G      +   A     S    +++ DA      I
Sbjct: 27  AIAYSGGVDST----FLVKVAYDVLG------DRVIAVTATSSTYPKRELNDAITFIKQI 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
              H V + EE                G    P   C  C + + F  +  V +  G + 
Sbjct: 77  GAKHIVIESEELEIE------------GFNKNPVDRCYYCKKEL-FEKIWKVAKAHGIEY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +A G          D    R  M    +L                  +  PL    + KE
Sbjct: 124 VADG------SNFDDLNDFRPGMKAACELN-----------------VVSPLKVAGLTKE 160

Query: 199 SVRDLAREMGLDIADKS 215
            +R L++E+GL   DK 
Sbjct: 161 DIRKLSKELGLPTWDKP 177


>gi|312127735|ref|YP_003992609.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777754|gb|ADQ07240.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 278

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            +A SGGVDS+     L +  YDV+G      +   A     S    +++ DA      I
Sbjct: 27  AIAYSGGVDST----FLVKVAYDVLG------DRVIAVTATSSTYPKRELNDAITFIKQI 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
              H V + EE                G    P   C  C + + F  +  V +  G + 
Sbjct: 77  GAKHIVIESEELEIE------------GFNKNPVDRCYYCKKEL-FEKIWKVAKAHGIEY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +A G          D    R  M    +L                  +  PL    + KE
Sbjct: 124 VADG------SNFDDLNDFRPGMKAACELN-----------------VVSPLKVAGLTKE 160

Query: 199 SVRDLAREMGLDIADKS 215
            +R L++E+GL   DK 
Sbjct: 161 DIRKLSKELGLPTWDKP 177


>gi|239833572|ref|ZP_04681900.1| GMP synthase, C-terminal domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821635|gb|EEQ93204.1| GMP synthase, C-terminal domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 523

 Score = 63.3 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        IG  +T  L +     K +           A++V
Sbjct: 227 KVICALSGGVDSSVAALLAHEA----IGDQLTCILVDHGLMRKNE-----------AQQV 271

Query: 80  C----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +  N+   + D  +RF                 P         +         ++
Sbjct: 272 VEMFREHYNLPLILVDASDRF--------IGELEGETDPEKKRKTIGRLFIEVFEEEAKK 323

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L GAD L  G      +          +  +           +    ++    L  PL +
Sbjct: 324 LGGADFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRE 376

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+GL 
Sbjct: 377 LFKDEVRLLGKELGLP 392


>gi|329116299|ref|ZP_08245016.1| argininosuccinate synthase [Streptococcus parauberis NCFD 2020]
 gi|326906704|gb|EGE53618.1| argininosuccinate synthase [Streptococcus parauberis NCFD 2020]
          Length = 400

 Score = 63.3 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 44/203 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           ++++A SGG+D+SV  A LK   YDV+ V + +          G       ++D A  V 
Sbjct: 5   KLILAYSGGLDTSVAIAWLKEK-YDVVAVCMDV----------GEGKDLDFIHDKALMVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  +V D +++F    ++P   ++A  E   P +   +R +    L+ +  Q  A 
Sbjct: 54  A---VESFVIDVKDQFAEEFVLPALQAHAFYEQKYPLISALSRPLISQKLVEIAHQTNAS 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPL--GD 194
           ++A G                   C       DQ  F   + A        +  P+    
Sbjct: 111 LIAHG-------------------CTGK--GNDQVRFEVAIAALDPDI--KVIAPVREWK 147

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
             +E   + A+E G+ +  + DS
Sbjct: 148 WSREEEINFAKENGVPVPAELDS 170


>gi|284048349|ref|YP_003398688.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952570|gb|ADB47373.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 275

 Score = 63.3 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 51/198 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77
           V VA SGGVDS+    LLK      G  V+ VT +            SC   + ++ +A+
Sbjct: 23  VAVAFSGGVDST---FLLKVAHDTLGDKVLAVTAR------------SCSFPERELKEAK 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C+   + H V D EE             ++   T   C  C   + F  +L V ++  
Sbjct: 68  AFCEKEGIRHLVVDSEEL--------SIPGFSHNPT-NRCYLCKHEL-FEKILEVAKENH 117

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +  G  +       DD    R   + +   +  S          L         + K
Sbjct: 118 LAAVVEGSNL-------DDEGDYRPGLQAIAELKIASP---------LRRA-----GLYK 156

Query: 198 ESVRDLAREMGLDIADKS 215
           + +R L++E+GL   +K 
Sbjct: 157 KEIRALSKELGLPTWNKQ 174


>gi|195352054|ref|XP_002042530.1| GM23268 [Drosophila sechellia]
 gi|194124399|gb|EDW46442.1| GM23268 [Drosophila sechellia]
          Length = 677

 Score = 63.3 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 28/205 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R  Y   +I V +     RK    K      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALYPDQIIAVHVDNGFMRKKESEK----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +      M     ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VRDL  ++GL 
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP 418


>gi|21227622|ref|NP_633544.1| hypothetical protein MM_1520 [Methanosarcina mazei Go1]
 gi|20906010|gb|AAM31216.1| conserved protein [Methanosarcina mazei Go1]
          Length = 275

 Score = 63.3 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 40/206 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGGVDS+ +AAL   +          L +   A            +  A +    I
Sbjct: 20  VIAFSGGVDSTTLAALAFEE----------LGDRALAVTIDSPLFPRHQLETASQAACEI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H +  +     N+V       Y    T   C  C + +    LL    + G + +  
Sbjct: 70  GIQHKILPFS---LNSV------PYFTANTINRCYFCKKAL-LETLLEFAEKTGYNAVLE 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G    +    G++    R +    +  +  S F+                ++ KE +R++
Sbjct: 120 G--TNASEIKGENRPGYRAIQEAGE--KIYSPFVEF--------------NVTKEEIREI 161

Query: 204 AREMGLDIADKSDSQDICFVQQGKYF 229
           A  + L  A +  +   C   +  Y 
Sbjct: 162 AANLSLSAAGRPSA--ACLATRIAYG 185


>gi|109899424|ref|YP_662679.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudoalteromonas atlantica T6c]
 gi|123170869|sp|Q15R63|GUAA_PSEA6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|109701705|gb|ABG41625.1| GMP synthase (glutamine-hydrolyzing) [Pseudoalteromonas atlantica
           T6c]
          Length = 525

 Score = 63.3 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 71/208 (34%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + K   D  V++ +SGGVDSSVVA LL R  G ++  V      L+L   ++     G  
Sbjct: 221 MKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGKNLTCVFVDNGLLRLNEGQQVMDMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   ++    D EERF +          A   T  P  +  R +   
Sbjct: 279 -------------DHFGLNIIKIDAEERFLS----------ALAGTDEP--EAKRKIIGR 313

Query: 128 DLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + V  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEVFDEESKKLKNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPD 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 DMAMGLVEPLRELFKDEVRKIGLELGLP 394


>gi|269118886|ref|YP_003307063.1| NAD+ synthetase [Sebaldella termitidis ATCC 33386]
 gi|268612764|gb|ACZ07132.1| NAD+ synthetase [Sebaldella termitidis ATCC 33386]
          Length = 261

 Score = 63.3 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 70/204 (34%), Gaps = 48/204 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGG+DSS+VA L K   G  +V GV +                + +   DA +V
Sbjct: 30  KVILGLSGGIDSSLVAFLAKEAFGKKNVHGVIM-----------PYRTSSPKSEEDALKV 78

Query: 80  CDTINVSHYVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            +   +S             V I     SY +     P     R         + R+   
Sbjct: 79  AEAAKIS----------WEKVEITNMVDSYFS---FFPDASPLRKGN-----RMARERM- 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +      R R  V   G             + + Y  ++T          P+ D+ K 
Sbjct: 120 -CILYDLSARDRSLVMGTGN------------KTEMYLGYSTQYGDAACALLPIADLYKT 166

Query: 199 SVRDLAREMGLD--IADKSDSQDI 220
            V  L+  +G+   + +K  S D+
Sbjct: 167 QVWSLSEYLGVPKEVIEKKPSADL 190


>gi|255693956|ref|ZP_05417631.1| GMP synthase domain protein [Bacteroides finegoldii DSM 17565]
 gi|260620230|gb|EEX43101.1| GMP synthase domain protein [Bacteroides finegoldii DSM 17565]
          Length = 435

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G +++ V      ++   S    +           
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGDNLVCVHVNHGLMRRGESEDVVEVFS-------- 191

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + +  +    D  +RF N +                 +     ++        
Sbjct: 192 -------NQLKANLIYVDATDRFLNKLAGVADPEQKRK------IIGGEFIRV--FEEEA 236

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R+L G D L  G        + + G +   M +           +    +    +L  PL
Sbjct: 237 RKLDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFELVEPL 286

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+GL 
Sbjct: 287 RQLFKDEVRACGLELGLP 304


>gi|311747046|ref|ZP_07720831.1| argininosuccinate synthase [Algoriphagus sp. PR1]
 gi|126578747|gb|EAZ82911.1| argininosuccinate synthase [Algoriphagus sp. PR1]
          Length = 397

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D++  A  L K  GY+V  V   L N+   S+ + +    +        
Sbjct: 2   KKVVLAYSGGLDTTFCALHLSKELGYEVHAV---LVNTGGFSEEELTTIQNR-------- 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + + S  V D  E +   VI              P  V   R ++   L    + +G
Sbjct: 51  AENLGIASFKVLDVVETYYQEVIKFLVFGNVLKNQTYPLSVSAERILQAKSLAEYAKSIG 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 AKSVAHG 117


>gi|18977888|ref|NP_579245.1| GMP synthase subunit B [Pyrococcus furiosus DSM 3638]
 gi|23821600|sp|Q8U0R8|GUAAB_PYRFU RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|18893648|gb|AAL81640.1| GMP synthase [Pyrococcus furiosus DSM 3638]
          Length = 313

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 35/200 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSS  A L  R  G  +  V          +          
Sbjct: 18  EIRETVGDSKAIIALSGGVDSSTAAVLAHRAIGDRLHAVF-------VNTGFLRKGEPEF 70

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLL 130
            +   R   D   ++ +  D ++RF  A           G T P         V      
Sbjct: 71  VIKTFR---DEFGMNLHYVDAQDRFFAA---------LKGVTDPEEKRKIIGRVFIEVFE 118

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V + +GA+ L  G      +      K                  +    ++    +  
Sbjct: 119 EVAKDIGAEYLIQGTIAPDWIESQGKIKSHHN--------------VGGLPEKLNLKIIE 164

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR LA+E+GL 
Sbjct: 165 PLRDLYKDEVRQLAKELGLP 184


>gi|284166769|ref|YP_003405048.1| NAD+ synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016424|gb|ADB62375.1| NAD+ synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 302

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 72/197 (36%), Gaps = 44/197 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQD---VYDAR 77
           VVVAMSGG+DS+  A L     G D V+G+              G  C   +   V +AR
Sbjct: 50  VVVAMSGGIDSTATAELAVEALGSDRVLGL--------------GLPCHKSERTGVSEAR 95

Query: 78  RVCDTINVSHYVFDYE---ERFRN-AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + + + +           E F+  A I     S   G+   P    +    F ++++  
Sbjct: 96  TIAEGLGIEFREIQLRPVLEAFKETAAIE--LESQDDGDDGRPDERNHA---FGNVIARL 150

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R   A   A     + RL +G     R  +           YF              PLG
Sbjct: 151 RMCCAYYAAN---RQHRLVLGT--ANRSELLLG--------YFTKYGDGAADAY---PLG 194

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K  VR LA+ +G+ 
Sbjct: 195 DLYKTEVRALAKRIGVP 211


>gi|254283294|ref|ZP_04958262.1| GMP synthase [gamma proteobacterium NOR51-B]
 gi|219679497|gb|EED35846.1| GMP synthase [gamma proteobacterium NOR51-B]
          Length = 525

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL R  G  +  V            RK       D++      
Sbjct: 229 KVLLGLSGGVDSSVVAALLHRAIGDQLTCVF-----VDNGLLRKQEGDQVMDMF-----A 278

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTV-KFSDLLSVTRQLG 137
             + V     D E  F                 P     +  N  +  F D     +   
Sbjct: 279 RNMGVRVIRVDAEALF--------LGKLRGESDPEAKRKIIGNTFIEIFDD--EAGKIQD 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +         +L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAGGKTGKAHVIKSHHN-------VGGLPDDMALELVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRQIGLELGLP 394


>gi|325567915|ref|ZP_08144416.1| argininosuccinate synthase [Enterococcus casseliflavus ATCC 12755]
 gi|325158389|gb|EGC70539.1| argininosuccinate synthase [Enterococcus casseliflavus ATCC 12755]
          Length = 404

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    L   GYDV+   L +   R     K           A  V  
Sbjct: 4   KVILAYSGGLDTSVSIKWLTDQGYDVVACCLDIGEGRDTQSIKDK---------ALAVGA 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +  Y  D  E F     +         E   P V   +R +    L+ +    GA  
Sbjct: 55  ---IESYAIDAREEFAQDFALIALQGNTFYENSYPLVSALSRPLIAKKLVELALATGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 VAHG 115


>gi|310764763|gb|ADP09713.1| GMP synthase [Erwinia sp. Ejp617]
          Length = 526

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 228 NDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEAEQVMEMFG-------- 279

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E RF +          A   T  P  +  R +     + V 
Sbjct: 280 -------DHFGLNIIHVAAENRFLD----------ALAGTDEP--EAKRKIIGRVFVEVF 320

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +          LA G      +        +  + +           +    ++    L
Sbjct: 321 DEEATKLSDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 373

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL ++ K+ VR +  E+GL  A
Sbjct: 374 VEPLKELFKDEVRKIGLELGLPHA 397


>gi|257868158|ref|ZP_05647811.1| argininosuccinate synthase [Enterococcus casseliflavus EC30]
 gi|257874568|ref|ZP_05654221.1| argininosuccinate synthase [Enterococcus casseliflavus EC10]
 gi|257877759|ref|ZP_05657412.1| argininosuccinate synthase [Enterococcus casseliflavus EC20]
 gi|257802272|gb|EEV31144.1| argininosuccinate synthase [Enterococcus casseliflavus EC30]
 gi|257808732|gb|EEV37554.1| argininosuccinate synthase [Enterococcus casseliflavus EC10]
 gi|257811925|gb|EEV40745.1| argininosuccinate synthase [Enterococcus casseliflavus EC20]
          Length = 404

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    L   GYDV+   L +   R     K           A  V  
Sbjct: 4   KVILAYSGGLDTSVSIKWLTDQGYDVVACCLDIGEGRDTQSIKDK---------ALAVGA 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +  Y  D  E F     +         E   P V   +R +    L+ +    GA  
Sbjct: 55  ---IESYAIDAREEFAQDFALIALQGNTFYENSYPLVSALSRPLIAKKLVELALATGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 VAHG 115


>gi|254412279|ref|ZP_05026054.1| conserved hypothetical protein TIGR00268 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181245|gb|EDX76234.1| conserved hypothetical protein TIGR00268 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 274

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 67/199 (33%), Gaps = 51/199 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++A SGGVDS++VA +     YDV+G      +   A   +      +++ DAR    
Sbjct: 18  RALIAYSGGVDSTLVAKIA----YDVLG------DRALAVTAESPSLLPEELEDARIQAA 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGA 138
            I + H +                       T  P   C  C   +    L  +  Q G 
Sbjct: 68  VIGIPHELV------------QTDEMNNPNYTANPVNRCYFCKSEL-HDTLKPLALQRGY 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
             +  G      +   D G  R  +                    Q    R PL +  + 
Sbjct: 115 PYVVDG------VNADDLGDYRPGIQAA-----------------QERGARSPLAEVGVT 151

Query: 197 KESVRDLAREMGLDIADKS 215
           K  VR L++++GL   DK 
Sbjct: 152 KAEVRQLSQQLGLPWWDKP 170


>gi|148378171|ref|YP_001252712.1| hypothetical protein CBO0165 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931125|ref|YP_001382571.1| hypothetical protein CLB_0202 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937579|ref|YP_001386124.1| hypothetical protein CLC_0213 [Clostridium botulinum A str. Hall]
 gi|148287655|emb|CAL81720.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927169|gb|ABS32669.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933493|gb|ABS38992.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 240

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS V+  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V           +   PC  C   ++ 
Sbjct: 61  TMTGADFSPLENVCSNINVPLYI--YKTPIKEIVFD-------LRKEKNPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKKLGCNKIALGHHKNDAIET 137


>gi|168705515|ref|ZP_02737792.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 514

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 35/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + RV+  +SGGVDSSV AALL +  G  V  + +     R+           +
Sbjct: 209 EIRRKVGNKRVICGLSGGVDSSVCAALLVKAIGPQVACIYVDNGLMREGETELVKHTF-R 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D + A           +  D  ERF  A          AG T        R +     + 
Sbjct: 268 DWFKA---------DLHAVDAGERFLTA---------LAGVT---DPQQKRKIIGKVFID 306

Query: 132 VTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V ++       A  LA G      +  G          +           +     +   
Sbjct: 307 VFKEEAKSIPDAHFLAQGTLYPDVIESGGSPDGPAATIKLHHN-------VGGLPAELGF 359

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  PL D+ K+ VR L  E+GL 
Sbjct: 360 ELIEPLRDLFKDEVRHLGTELGLP 383


>gi|51892287|ref|YP_074978.1| NH(3)-dependent NAD+ synthetase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855976|dbj|BAD40134.1| NH(3)-dependent NAD+ synthetase [Symbiobacterium thermophilum IAM
           14863]
          Length = 321

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 27  MSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           +SGGVDSS VAA+ K+   D  +G+ L       ++  +      QDV DA RV   + +
Sbjct: 46  LSGGVDSSTVAAISKQAAPDGALGLIL-----PCSTPEEMKGERLQDVRDAERVAAHLGI 100

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD--LLSVTRQLGADVLAT 143
                D  + ++ A  +  A++    E           ++++   +    R + A   A 
Sbjct: 101 PAVTIDLSDLWQQAAALFSAAARELAE-KAGVPLEEERLQWAIHNMKPTLRIMTAGFFAD 159

Query: 144 GHYIRSRLYVGDDGKRRRIM----CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                  L +G        +     R   +   Q                 P+ D  KE 
Sbjct: 160 TF---RGLMMGTGNGVEYFLGYFSLRGDGISDRQ-----------------PIRDCTKEE 199

Query: 200 VRDLAREMGLD 210
           VR +A   GL 
Sbjct: 200 VRAMAASAGLP 210


>gi|312879913|ref|ZP_07739713.1| argininosuccinate synthase [Aminomonas paucivorans DSM 12260]
 gi|310783204|gb|EFQ23602.1| argininosuccinate synthase [Aminomonas paucivorans DSM 12260]
          Length = 419

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 67/204 (32%), Gaps = 41/204 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    LK  GYDV  VT+        +   G     +   D  + 
Sbjct: 4   KGKVVLAYSGGLDTSVAIQWLKDQGYDV--VTM--------TADVGQQVDLEACKD--KA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             T  V+ YV D  E F          + A  +   P     +R +    L+ V    GA
Sbjct: 52  LRTGAVNAYVMDLREEFVQQYAWKALKANAQYQGTYPLNSALSRPLIARQLVQVAEMEGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--G 193
             +A G                          + Q           L     +  P+   
Sbjct: 112 VAVAHG-----------------------CTGKGQDQVRIEVCTNALNPELKVEAPVRDW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   + A+E G+ +    +S
Sbjct: 149 HFSREDEIEYAQEHGIPVPTTKES 172


>gi|317049125|ref|YP_004116773.1| GMP synthase large subunit [Pantoea sp. At-9b]
 gi|316950742|gb|ADU70217.1| GMP synthase, large subunit [Pantoea sp. At-9b]
          Length = 526

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 35/199 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 228 EDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQ 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
           V +     H+  +       A    F  + A    P       R +     + V  +   
Sbjct: 274 VLEMFG-DHFGLNIVHVAAEA---RFLEALAGENDPE----AKRKIIGRVFVEVFDEEAG 325

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                  LA G      +        +  + +           +    ++    L  PL 
Sbjct: 326 KLTDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVEPLK 378

Query: 194 DMKKESVRDLAREMGLDIA 212
           ++ K+ VR +  E+GL  A
Sbjct: 379 ELFKDEVRKIGLELGLPYA 397


>gi|261820583|ref|YP_003258689.1| GMP synthase [Pectobacterium wasabiae WPP163]
 gi|261604596|gb|ACX87082.1| GMP synthase, large subunit [Pectobacterium wasabiae WPP163]
          Length = 525

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 NDHVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEADQVLEMFGDHFG---- 282

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
                    +N+ H   +            F +  A    P       R +     +   
Sbjct: 283 ---------LNIVHVAAE----------DRFLNELAGENDPE----AKRKIIGRVFVEVF 319

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +Q     LA G      +        +  + +           +    ++    L
Sbjct: 320 DEEANKQTDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLKELFKDEVRKIGLELGLP 394


>gi|260881375|ref|ZP_05404238.2| PP-loop family protein [Mitsuokella multacida DSM 20544]
 gi|260849228|gb|EEX69235.1| PP-loop family protein [Mitsuokella multacida DSM 20544]
          Length = 294

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 47/196 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA S GVDS+     L +  +DV+G      +   A          +DV DA+  C  
Sbjct: 37  VAVAFSSGVDST----FLVKVAHDVLG------DKAVAFTAASDFVPQRDVDDAKAFCAK 86

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSVTRQLGADVL 141
             + H+   +          P  +     E P   C  C   + F+ +  +  + G   +
Sbjct: 87  EGIEHHTVPF----------PILTVPHVEENPEDRCYFCKHAL-FAHMKELAAERGLAAV 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G        + DDG  R       +L                  +  PL +  M+K  
Sbjct: 136 VDG------SNLDDDGDYRPGHKALKELA-----------------IVSPLHEAGMRKAD 172

Query: 200 VRDLAREMGLDIADKS 215
           +R L++ +GL   DK 
Sbjct: 173 IRALSKALGLPTWDKP 188


>gi|321309568|ref|YP_004191897.1| GMP synthase large subunit (glutamine-hydrolyzing) [Mycoplasma
           haemofelis str. Langford 1]
 gi|319801412|emb|CBY92058.1| GMP synthase large subunit (glutamine-hydrolyzing) [Mycoplasma
           haemofelis str. Langford 1]
          Length = 512

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 46/203 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++A+SGG+DSSVVA LLKR   +++ GV +          +K       ++     
Sbjct: 215 NNKVLLALSGGLDSSVVAKLLKRACEHNLTGVFIDTGFYPDKEIKKVMDYFKGELRS--- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-------FSDLLS 131
                  S ++ D +E++ NA           G +  P  +  R +        F + L 
Sbjct: 272 -------SFHIIDEKEKYMNA---------LRGVS-NP--EEKRRIIGKLFLNSFENFLE 312

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD---L 188
            T + G   LA G      +  G        +                 T  +L +   +
Sbjct: 313 KTGE-GKFFLAQGTIQSDLIESGKKSDSSHTIKT------------HHNTIAELRENITV 359

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL D+ K  VR+L R++ L  
Sbjct: 360 IEPLSDLFKNEVRELGRKLDLPN 382


>gi|225163500|ref|ZP_03725813.1| GMP synthase, large subunit [Opitutaceae bacterium TAV2]
 gi|224801876|gb|EEG20159.1| GMP synthase, large subunit [Opitutaceae bacterium TAV2]
          Length = 521

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 38/198 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A+SGGVDSSV AALL +  G  +  V            RK      + +Y      
Sbjct: 222 RVLLALSGGVDSSVCAALLHKAIGKQLTCVY-----VDTGLMRKDETKHIEALY-----A 271

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTRQL 136
               +   + D    F              G T     +  R +  +  +       R+L
Sbjct: 272 KHFKIDLRIVDASRTFLKR---------LKGIT---DPERKRKIIGAAFIEVFEKKVREL 319

Query: 137 ----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               G + L  G      +     G     M +           +    ++    L  PL
Sbjct: 320 KHKEGIEYLGQGTIYPDVIESMAIGNNPAAMIKSHHN-------VGGLPERMKFKLVEPL 372

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  ++GL 
Sbjct: 373 RQLFKDEVRLVGTKLGLP 390


>gi|313894060|ref|ZP_07827626.1| NAD+ synthase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441624|gb|EFR60050.1| NAD+ synthase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 255

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          VV +SGG DS++VAAL K   G D V+GV +                   D+ DA+ V +
Sbjct: 30 VVGISGGKDSTIVAALCKEALGADRVVGVLMPN-------------GVQSDIDDAKAVVE 76

Query: 82 TINVSHYVFDYEERFR 97
           + + H   +    + 
Sbjct: 77 HLGIPHITVNIGAAYE 92


>gi|32266943|ref|NP_860975.1| guanosine monophosphate synthetase GuaA [Helicobacter hepaticus ATCC
            51449]
 gi|44887939|sp|Q7VG78|GUAA_HELHP RecName: Full=Probable GMP synthase [glutamine-hydrolyzing]; AltName:
            Full=GMP synthetase; AltName: Full=Glutamine
            amidotransferase
 gi|32262995|gb|AAP78041.1| guanosine monophosphate synthetase GuaA [Helicobacter hepaticus ATCC
            51449]
          Length = 1375

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 38/209 (18%)

Query: 10   NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCC 68
            NSL + K     +V+ A+SGGVDSSVVAALL R  G ++I V            RKG   
Sbjct: 1066 NSLKITKETTS-KVLCAVSGGVDSSVVAALLYRAIGENLIPVF-----VDTGLLRKGERE 1119

Query: 69   AGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
            A + ++      + + V     D  E F +    V+ P       GET +          
Sbjct: 1120 AVEKIFK-----ENLKVPLITADASELFLSRLKGVLDPEIKRKIIGETFIEV-------- 1166

Query: 126  FSDLLSVTRQLG----ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
                    ++         LA G  +   +      K      +           +    
Sbjct: 1167 ---FEKEAKKHNTKGEIKFLAQG-TLYPDVIESVSVKGPSKTIKSHHN-------VGGLP 1215

Query: 182  QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL ++ K+ VR L RE+G+ 
Sbjct: 1216 EWMKFELIEPLRELFKDEVRALGRELGMP 1244


>gi|310778067|ref|YP_003966400.1| Queuosine synthesis [Ilyobacter polytropus DSM 2926]
 gi|309747390|gb|ADO82052.1| Queuosine synthesis [Ilyobacter polytropus DSM 2926]
          Length = 329

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR +   SGG+DS++   ++   G +VI +               S   G     A ++ 
Sbjct: 1   MRALALFSGGLDSALAIKVVVDQGIEVIAL------------NFVSHFFGGKNEKAEKMA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + V     D+ +     +     S    G+   PC+DC+  + F     +  +  A+ 
Sbjct: 49  EQLGVRLEYVDFSKIHTEILKE---SPSGRGKNMNPCIDCHALM-FEVAAKLLEKYDANF 104

Query: 141 LATGHYIRSRLYVGD 155
           + +G  +  R    +
Sbjct: 105 IISGEVLGQRPMSQN 119


>gi|83945246|ref|ZP_00957595.1| GMP synthase [Oceanicaulis alexandrii HTCC2633]
 gi|83851416|gb|EAP89272.1| GMP synthase [Oceanicaulis alexandrii HTCC2633]
          Length = 522

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 41/234 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV A L+    G  +  V            R G       ++      
Sbjct: 226 RVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDTGLMRSGEADQVVTLFR----- 275

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
           +  N+     D EERF         S+ A    P         +         + + GAD
Sbjct: 276 EHYNIPLVAADEEERF--------LSALAGESDPEKKRKTIGKLFIDVFEDKAKGVGGAD 327

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +          +  +           +    ++    L  PL ++ K+ 
Sbjct: 328 FLAQGTLYPDVIESVSFDGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELFKDE 380

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           VR L RE+GL      +S    F+ +  +          I + G+ V  +   +
Sbjct: 381 VRALGRELGLP-----ES----FIGRHPFPG----PGLAIRIPGE-VTKDKADI 420


>gi|224370187|ref|YP_002604351.1| putative tRNA,
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
 gi|223692904|gb|ACN16187.1| putative tRNA,
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
          Length = 333

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 14  LDKNPKDMRV-VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +++     +V  + + SGG+DS + A +L+  G DV       +                
Sbjct: 1   MEEKKTLKKVRALGLTSGGLDSILSALVLREQGIDVT------W--------VSFTTPFF 46

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             + A++  D   +   V D  E +   +  P A     G+   PC+DC+  + F++   
Sbjct: 47  SSHAAQKAADRYKIPLMVVDITEIYIEMLKNPPA---GYGKNMNPCMDCHVLM-FAEAGR 102

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRR 161
           +  Q G D L +G     R +  +    R 
Sbjct: 103 IMVQEGFDFLFSGEVAGQRPFSQNKRSLRY 132


>gi|88799912|ref|ZP_01115484.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Reinekea sp. MED297]
 gi|88777343|gb|EAR08546.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Reinekea sp. MED297]
          Length = 525

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V     ++    K +G      D   A  
Sbjct: 227 DRNVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRKDEG------DQVMAMF 277

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + + V     D E+RF NA+                 +  ++ +           +  
Sbjct: 278 -AENMGVRVIRADAEDRFLNALKGVSDPEEKRK------IIGHQFI--EVFDEQAHSIQD 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VDFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEEMKLSLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|212223802|ref|YP_002307038.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
 gi|212008759|gb|ACJ16141.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 264

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R++V  SGG DSS+   LL   G +V  +T                   + +  A + 
Sbjct: 20  EKRILVLFSGGKDSSLALYLLNEAGLNVSALTF-----------FHRWSWRETLNWAMKF 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + V HY+ D        V         AG     C++C + + ++         G D
Sbjct: 69  TKKLGVEHYLVD--------VTDGLLRE-TAGRKGPICINCKKVMLWNAKW-FAINNGFD 118

Query: 140 VLATGHYIRSRLY 152
           VLA G     ++ 
Sbjct: 119 VLAKGDNANDKII 131


>gi|193075024|gb|ACF08514.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 81  KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 129

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 130 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 174

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 175 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 227

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 228 LRELFKDEVRKIGLELGLP 246


>gi|319789617|ref|YP_004151250.1| PP-loop domain protein [Thermovibrio ammonificans HB-1]
 gi|317114119|gb|ADU96609.1| PP-loop domain protein [Thermovibrio ammonificans HB-1]
          Length = 309

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +V+VA+SGG DS +     L R GY+  G          +   KG   + + +   R
Sbjct: 51  KREKVLVAVSGGKDS-LSLWFALHRLGYETYGFH-------VSLGIKGWDYSERSLEMCR 102

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQ 135
           ++ + I     VFD +E F            A G T    V C+    F   L   V R+
Sbjct: 103 KLSERIGRPLIVFDLKEEF-----GYTIEEIAKG-TGRRDV-CSVCGTFKRYLMNKVARE 155

Query: 136 LGADVLATGHYI 147
            G  V+ATGH +
Sbjct: 156 HGFKVVATGHNL 167


>gi|298486037|ref|ZP_07004111.1| GMP synthase [glutamine-hydrolyzing] [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159514|gb|EFI00561.1| GMP synthase [glutamine-hydrolyzing] [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 525

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EERF N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEERFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|289209073|ref|YP_003461139.1| GMP synthase, large subunit [Thioalkalivibrio sp. K90mix]
 gi|288944704|gb|ADC72403.1| GMP synthase, large subunit [Thioalkalivibrio sp. K90mix]
          Length = 525

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  VV+ +SGGVDSSVV ALL +  G  +  V      L+L    +              
Sbjct: 227 DDHVVLGLSGGVDSSVVGALLHKAIGDQLTCVFVDTGLLRLGEGDQVMATF--------- 277

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-- 131
                    + V+    D E+RF  A          AG   +   +  R V     +   
Sbjct: 278 ------ARHMGVNVIRVDAEDRFMRA---------LAG---VEDPEVKRKVIGGLFIDVF 319

Query: 132 ---VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +      LA G      +   D    +  + +           +    +     L
Sbjct: 320 DEEAAKLDNVQWLAQGTIYPDVIESADSKTGKAHVIKSHHN-------VGGLPENMKLGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL ++ K+ VR +  E+GL   
Sbjct: 373 VEPLRELFKDEVRKIGVELGLPTE 396


>gi|206901533|ref|YP_002251489.1| argininosuccinate synthase [Dictyoglomus thermophilum H-6-12]
 gi|254807520|sp|B5YAL9|ASSY_DICT6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|206740636|gb|ACI19694.1| argininosuccinate synthase [Dictyoglomus thermophilum H-6-12]
          Length = 397

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV    L+++   DVI +T                  G ++ + +
Sbjct: 2   KKEKVVLAYSGGLDTSVAIKWLMQKYSLDVITLT-------------VDIGQGINLDEIK 48

Query: 78  RVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
              + + V   YV D +E F    I+P   S A  E   P     +R +    L+ + ++
Sbjct: 49  NKAENLGVEKAYVLDLKEEFVKDYIIPAIKSNAMYERVYPLATALSRPLIAKYLVKIAKE 108

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 109 NGAKYVAHG 117


>gi|217972560|ref|YP_002357311.1| GMP synthase [Shewanella baltica OS223]
 gi|254800114|sp|B8E9T4|GUAA_SHEB2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|217497695|gb|ACK45888.1| GMP synthase, large subunit [Shewanella baltica OS223]
          Length = 525

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 70/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDNGLLRLNEAEQVMEMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   ++    D E RF +A           GE      +  R +   
Sbjct: 279 -------------DHFGLNIIHVDAENRFLDA---------MKGE---ADPEAKRKIIGR 313

Query: 128 DLLSVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEIFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPD 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 HMELGLVEPLRELFKDEVRKIGLELGLP 394


>gi|14591383|ref|NP_143461.1| hypothetical protein PH1608 [Pyrococcus horikoshii OT3]
 gi|3258037|dbj|BAA30720.1| 295aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 295

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R+++  SGG DSS+   LLK  GY+V  +T                   + +    + 
Sbjct: 54  NKRIILMFSGGKDSSLALYLLKEAGYNVSALTF-----------FHKWSWPEVLRWGMKF 102

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + V+HY+ D  E  +   I         G     C+ C + + ++         G +
Sbjct: 103 TKKLGVTHYLIDITEGLKREAI---------GRKGPICIHCKKVMLWNAKW-FAVNNGFE 152

Query: 140 VLATGHYIRSRLY 152
           ++A G     ++ 
Sbjct: 153 LIAKGDNANDKII 165


>gi|307610418|emb|CBW99988.1| hypothetical protein LPW_17451 [Legionella pneumophila 130b]
          Length = 525

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 46/201 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL R  G  ++ V      L+L  + +     G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHRAIGEQLVCVFVDTGLLRLNEAEQVLSMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                  + +     + E++F  A           G T   C +  R +     + V  +
Sbjct: 278 -----RHMGIRIIAVNAEDKFLTA---------LKGVT---CPEEKRKIIGRTFIEVFDE 320

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF------LFATTQQQLCDLR 189
             A  LA   ++       D      ++        D +        +          L 
Sbjct: 321 -EAQKLADIKWLAQGTIYPD------VIESAATSTNDAAVVIKSHHNVGGLPDTLNLKLL 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            P+ ++ K+ VR +  E+GL 
Sbjct: 374 EPIRELFKDEVRQVGLELGLP 394


>gi|89054712|ref|YP_510163.1| GMP synthase [Jannaschia sp. CCS1]
 gi|88864261|gb|ABD55138.1| GMP synthase (glutamine-hydrolyzing) [Jannaschia sp. CCS1]
          Length = 535

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 81/234 (34%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV AALL    G  +  V     +       +G     + V   R 
Sbjct: 237 DAKVICALSGGVDSSVTAALLHEAIGDQLTCVF---VDHGLLRLNEG----AEVVEMFR- 288

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D +N   +V   EE+        F         P       R +     + V ++   
Sbjct: 289 --DHMN--LHVIHAEEQ------DLFLGELDGVSDPE----TKRKIIGRLFIDVFQKYAG 334

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD LA G      +          +  +           +    ++    L  PL 
Sbjct: 335 QIEGADFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLTLVEPLR 387

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL            F+ +  +         G+A+   G+I
Sbjct: 388 ELFKDEVRALGRELGLPAH---------FIARHPF------PGPGLAIRCPGEI 426


>gi|254437220|ref|ZP_05050714.1| GMP synthase, C-terminal domain protein [Octadecabacter antarcticus
           307]
 gi|198252666|gb|EDY76980.1| GMP synthase, C-terminal domain protein [Octadecabacter antarcticus
           307]
          Length = 507

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 79/239 (33%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDSSV AALL    G  +  V      L+L  +                
Sbjct: 209 DKQVICGLSGGVDSSVTAALLHEAIGDQLTCVFVDHGLLRLNEADDVMTMFR-------- 260

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D +N+     D +E F          +      P       R +     + V 
Sbjct: 261 -------DNMNLKVIYADEKELF--------LGALEGQSDPE----TKRKIIGGLFIDVF 301

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ++      GA+ LA G      +          +  +           +    ++    L
Sbjct: 302 QKYANKIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKL 354

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 355 VEPLRELFKDEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 398


>gi|126175185|ref|YP_001051334.1| GMP synthase [Shewanella baltica OS155]
 gi|153001511|ref|YP_001367192.1| GMP synthase [Shewanella baltica OS185]
 gi|160876247|ref|YP_001555563.1| GMP synthase [Shewanella baltica OS195]
 gi|304410028|ref|ZP_07391647.1| GMP synthase, large subunit [Shewanella baltica OS183]
 gi|307302259|ref|ZP_07582017.1| GMP synthase, large subunit [Shewanella baltica BA175]
 gi|226739726|sp|A3D6V2|GUAA_SHEB5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739727|sp|A6WQP0|GUAA_SHEB8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739728|sp|A9KWW6|GUAA_SHEB9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|125998390|gb|ABN62465.1| GMP synthase (glutamine-hydrolyzing) [Shewanella baltica OS155]
 gi|151366129|gb|ABS09129.1| GMP synthase, large subunit [Shewanella baltica OS185]
 gi|160861769|gb|ABX50303.1| GMP synthase, large subunit [Shewanella baltica OS195]
 gi|304351437|gb|EFM15836.1| GMP synthase, large subunit [Shewanella baltica OS183]
 gi|306914297|gb|EFN44718.1| GMP synthase, large subunit [Shewanella baltica BA175]
 gi|315268436|gb|ADT95289.1| GMP synthase, large subunit [Shewanella baltica OS678]
          Length = 525

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 70/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDNGLLRLNEAEQVMEMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   ++    D E RF +A           GE      +  R +   
Sbjct: 279 -------------DHFGLNIIHVDAENRFLDA---------MKGE---ADPEAKRKIIGR 313

Query: 128 DLLSVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEIFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPD 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 DMELGLVEPLRELFKDEVRKIGLELGLP 394


>gi|327468460|gb|EGF13945.1| argininosuccinate synthase [Streptococcus sanguinis SK330]
          Length = 399

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G     + ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLEFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|20089138|ref|NP_615213.1| hypothetical protein MA0240 [Methanosarcina acetivorans C2A]
 gi|19914006|gb|AAM03693.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 281

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 42/207 (20%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+A SGGVDSS +AAL  +  G   + VT+                  Q +  A +    
Sbjct: 20  VIAFSGGVDSSTLAALAFEELGEKALAVTI-----------DSPLFPRQQLETAAQTACE 68

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H +  +      +V       Y +  T   C  C + +    L+    + G +V+ 
Sbjct: 69  IGIQHKILPFS---LTSV------PYFSANTINRCYFCKKAL-LETLVEFAEKAGYNVVL 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G    +    G++    R +    D  +  S F+                ++ KE +R+
Sbjct: 119 EG--TNASEIKGENRPGYRAIEEAGD--KIFSPFVEF--------------NVTKEEIRE 160

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYF 229
           +A    L +A K  +   C   +  Y 
Sbjct: 161 IASNRALSVASKPSA--ACLATRIAYG 185


>gi|325266943|ref|ZP_08133614.1| GMP synthase [Kingella denitrificans ATCC 33394]
 gi|324981684|gb|EGC17325.1| GMP synthase [Kingella denitrificans ATCC 33394]
          Length = 546

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AAL+ R  G  +  V                      + +A  
Sbjct: 242 NDEVILGLSGGVDSSVAAALIHRAIGDQLTCVF--------------VDHGLLRLNEAEN 287

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D + V     D  E+F             AG T     +  R +  ++ + V  
Sbjct: 288 VMKMFADNLGVRVIHVDASEQFMAK---------LAGVT---DPEQKRKIIGAEFIEVFD 335

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                +       +  +Y            +   ++   +  +    +     L  PL D
Sbjct: 336 AEEKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRD 393

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 394 LFKDEVRELGVALGLP 409


>gi|193075014|gb|ACF08509.1| GuaA [Pseudomonas aeruginosa]
 gi|193075016|gb|ACF08510.1| GuaA [Pseudomonas aeruginosa]
 gi|193075018|gb|ACF08511.1| GuaA [Pseudomonas aeruginosa]
 gi|193075020|gb|ACF08512.1| GuaA [Pseudomonas aeruginosa]
 gi|193075022|gb|ACF08513.1| GuaA [Pseudomonas aeruginosa]
 gi|193075026|gb|ACF08515.1| GuaA [Pseudomonas aeruginosa]
 gi|193075028|gb|ACF08516.1| GuaA [Pseudomonas aeruginosa]
 gi|193075030|gb|ACF08517.1| GuaA [Pseudomonas aeruginosa]
 gi|193075032|gb|ACF08518.1| GuaA [Pseudomonas aeruginosa]
 gi|193075034|gb|ACF08519.1| GuaA [Pseudomonas aeruginosa]
 gi|193075036|gb|ACF08520.1| GuaA [Pseudomonas aeruginosa]
 gi|193075038|gb|ACF08521.1| GuaA [Pseudomonas aeruginosa]
 gi|193075040|gb|ACF08522.1| GuaA [Pseudomonas aeruginosa]
 gi|193075042|gb|ACF08523.1| GuaA [Pseudomonas aeruginosa]
 gi|193075044|gb|ACF08524.1| GuaA [Pseudomonas aeruginosa]
 gi|193075046|gb|ACF08525.1| GuaA [Pseudomonas aeruginosa]
 gi|193075048|gb|ACF08526.1| GuaA [Pseudomonas aeruginosa]
 gi|193075050|gb|ACF08527.1| GuaA [Pseudomonas aeruginosa]
 gi|193075052|gb|ACF08528.1| GuaA [Pseudomonas aeruginosa]
 gi|193075054|gb|ACF08529.1| GuaA [Pseudomonas aeruginosa]
 gi|193075056|gb|ACF08530.1| GuaA [Pseudomonas aeruginosa]
 gi|193075058|gb|ACF08531.1| GuaA [Pseudomonas aeruginosa]
 gi|193075060|gb|ACF08532.1| GuaA [Pseudomonas aeruginosa]
 gi|193075064|gb|ACF08534.1| GuaA [Pseudomonas aeruginosa]
 gi|193075066|gb|ACF08535.1| GuaA [Pseudomonas aeruginosa]
 gi|193075068|gb|ACF08536.1| GuaA [Pseudomonas aeruginosa]
 gi|193075072|gb|ACF08538.1| GuaA [Pseudomonas aeruginosa]
 gi|193075074|gb|ACF08539.1| GuaA [Pseudomonas aeruginosa]
 gi|193075076|gb|ACF08540.1| GuaA [Pseudomonas aeruginosa]
 gi|193075078|gb|ACF08541.1| GuaA [Pseudomonas aeruginosa]
 gi|193075080|gb|ACF08542.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 62.9 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 81  KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 129

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 130 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 174

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 175 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 227

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 228 LRELFKDEVRKIGLELGLP 246


>gi|193075062|gb|ACF08533.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 81  KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 129

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 130 ----AENMGVKVIRANVEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 174

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 175 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 227

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 228 LRELFKDEVRKIGLELGLP 246


>gi|297564753|ref|YP_003683725.1| NAD+ synthetase [Meiothermus silvanus DSM 9946]
 gi|296849202|gb|ADH62217.1| NAD+ synthetase [Meiothermus silvanus DSM 9946]
          Length = 289

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 47/194 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VVA+SGGVDS+V  AL  +  G  +V  V +             +    +    A  
Sbjct: 38  KKAVVALSGGVDSAVTLALGVQALGAKNVYAVYM-----------PHAISRPESREHAEL 86

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     V   V D         I     SYAA    +P +   R                
Sbjct: 87  IAGMYGVPFEVVD---------ITGMVESYAAQ---VPDITPRRK--------------- 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL--RFPLGDMK 196
                    R+R  VG D   +          + +  F + T    + D     PLGD+ 
Sbjct: 120 ----GNAMARARTIVGFDKAEQYGGLHLGTGNKTERLFGYYTWHD-VADTGPINPLGDLY 174

Query: 197 KESVRDLAREMGLD 210
           K  V  LA  + L 
Sbjct: 175 KTQVWGLAEYLELP 188


>gi|261855227|ref|YP_003262510.1| GMP synthase [Halothiobacillus neapolitanus c2]
 gi|261835696|gb|ACX95463.1| GMP synthase, large subunit [Halothiobacillus neapolitanus c2]
          Length = 528

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 37/195 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDSSVVAALL +     IG  +T    ++      +G               
Sbjct: 233 VILGLSGGVDSSVVAALLHKA----IGDQLTCIFVDNGLLRLNEGDQVMSTF-------A 281

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----- 135
             + V     D E RF             A    +   +  R +     + +  +     
Sbjct: 282 QHMGVRVIRVDAEARF------------LAALEGVADPEDKRKIIGGIFVEIFEEQANLH 329

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +  + +           +          L  PL ++
Sbjct: 330 KNAAWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPAHMRLKLLEPLREL 382

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 383 FKDEVRKIGVELGLP 397


>gi|254786599|ref|YP_003074028.1| GMP synthase [Teredinibacter turnerae T7901]
 gi|259647690|sp|C5BLU3|GUAA_TERTT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|237687074|gb|ACR14338.1| GMP synthase (glutamine-hydrolyzing) [Teredinibacter turnerae
           T7901]
          Length = 525

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL R  G  +  V            RK       D++      
Sbjct: 229 KVLLGLSGGVDSSVVAALLHRAIGDQLTCVF-----VDNGLLRKQEGDQVMDMF-----A 278

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + V     D E+ F +    +  P       G T +   D              +   
Sbjct: 279 KNMGVKVVRADAEDLFLSKLHGINDPEQKRKIIGNTFIEVFDT----------EAAKLQN 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    +    +L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEDMQFELVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|116071765|ref|ZP_01469033.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. BL107]
 gi|116065388|gb|EAU71146.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. BL107]
          Length = 528

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      + +D    
Sbjct: 224 QKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMEFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLG- 137
               N++    +  +RF +            G T           +F       +++LG 
Sbjct: 276 -QKFNINVEYINARKRFIDK---------LKGITDPEDKRKIIGTEFIRVFEEESKRLGP 325

Query: 138 ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            D LA G  Y       G +   +      + ++   +  +    +     L  PL  + 
Sbjct: 326 FDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLRFKLVEPLRKLF 383

Query: 197 KESVRDLAREMGLD 210
           K+ VR + R +GL 
Sbjct: 384 KDEVRKVGRNLGLP 397


>gi|94501253|ref|ZP_01307775.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanobacter sp. RED65]
 gi|94426680|gb|EAT11666.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanobacter sp. RED65]
          Length = 524

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSVVAALL +  G  +  V     ++    K +G       V D   
Sbjct: 226 ERKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRKNEGD-----MVMD--M 275

Query: 79  VCDTINVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               + V     D E+ F   +  I                V  N  +          ++
Sbjct: 276 FAKNMGVKVIRADAEDLFLGKLNGIDDPEKKRK--------VIGNTFI--DVFDEEAGKI 325

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D LA G      +        +  + +           +         +L  PL ++
Sbjct: 326 KEVDFLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMELVEPLREL 378

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 379 FKDEVRKIGLELGLP 393


>gi|330508537|ref|YP_004384965.1| hypothetical protein MCON_2758 [Methanosaeta concilii GP-6]
 gi|328929345|gb|AEB69147.1| conserved hypothetical protein TIGR00268 [Methanosaeta concilii
           GP-6]
          Length = 265

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 45/231 (19%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D+  +  R++++ SGGVDSS    LL +  +DV+G          A           ++ 
Sbjct: 12  DRIREKERLLISYSGGVDSS----LLAKLAHDVLG------EGAVAVILDSEIYPRSELE 61

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           +A  + +++ +   V    ERF            A  + P   C  C +    + L  V 
Sbjct: 62  EAVALAESLGLELRV----ERFS------ILDDQAFSQNPSTRCYICKKRSS-AILKRVA 110

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G   +A G                       D   D    + A +++ +    F   
Sbjct: 111 QKEGMSCIADGVNA--------------------DDLDDYRPGIAACSEEGIWHP-FVDS 149

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + K+ +R LA++MGL + DK  S   C   +  Y + + R    +  EG+
Sbjct: 150 GITKKDIRTLAQDMGLPVWDKPSS--ACLASRIPYNERITREGLRMVEEGE 198


>gi|329956211|ref|ZP_08296891.1| putative argininosuccinate synthase [Bacteroides clarus YIT 12056]
 gi|328524685|gb|EGF51746.1| putative argininosuccinate synthase [Bacteroides clarus YIT 12056]
          Length = 404

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNE 52

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 53  ENAYKLGAVKYITLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|296132308|ref|YP_003639555.1| GMP synthase, large subunit [Thermincola sp. JR]
 gi|296030886|gb|ADG81654.1| GMP synthase, large subunit [Thermincola potens JR]
          Length = 513

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 30/200 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+ A+SGGVDSSV AAL+ +  G  +  V     +     K +       
Sbjct: 211 EIKEKVGDKKVLCALSGGVDSSVAAALVHKAVGDQLTCVF---VDHGLLRKDEARQVIQT 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    D  +++    D   RF N +                 +  N  ++      
Sbjct: 268 FR-------DQFHINLVAVDASARFLNKLKGVTDPEQKRK------IIGNEFIRV--FEE 312

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             R+LG  D L  G        V + G     + +           +    +    DL  
Sbjct: 313 EARKLGEIDFLVQG---TLYPDVVESGTDTAAVIKSHHN-------VGGLPEDMKFDLVE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +  ++GL 
Sbjct: 363 PLRWLFKDEVRQVGEQLGLP 382


>gi|312114447|ref|YP_004012043.1| GMP synthase, large subunit [Rhodomicrobium vannielii ATCC 17100]
 gi|311219576|gb|ADP70944.1| GMP synthase, large subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 525

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 30/197 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + RV+  +SGGVDSSV A L+    G  +  +      ++L  S +              
Sbjct: 222 NERVICGLSGGVDSSVAAVLIHEAIGDQLTCIYVDHGLMRLGESEQVVGMFR-------- 273

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D  N+     D  + F                 P         +      +  
Sbjct: 274 -------DHYNIPLVHVDASDLF--------IDQLEGEADPEKKRKTIGRLFIEVFEAEA 318

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +++ AD      ++       D  +       P    +   + +    ++    L  PL 
Sbjct: 319 KKIAADGRGAPRFLAQGTLYPDVIESVSFSGGPSVTIKSH-HNVGGLPERMHMKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L RE+GL 
Sbjct: 378 ELFKDEVRALGRELGLP 394


>gi|87307823|ref|ZP_01089966.1| GMP synthase [Blastopirellula marina DSM 3645]
 gi|87289437|gb|EAQ81328.1| GMP synthase [Blastopirellula marina DSM 3645]
          Length = 529

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 69/205 (33%), Gaps = 37/205 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D RV+  +SGGVDS+VVAALL    Y  IG  L          RK        
Sbjct: 224 EIRERVGDNRVICGLSGGVDSAVVAALL----YQAIGPQLSCILVDNGLLRK-------- 271

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
             +A  V            +V D +++F      +  P       G   + C        
Sbjct: 272 -QEAESVIAEFTKHFKTDLHVVDAKDQFLKELAGITEPQEKRRRIGYQFVEC-------- 322

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F       +   A  LA G      +  G          +           +    ++  
Sbjct: 323 FKA--EALKIKDAKFLAQGTLYPDVIESGAALDGPAATIKLHHN-------VGGLPKELG 373

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL D+ K+ VR L  E+GL 
Sbjct: 374 FELIEPLRDLFKDEVRKLGLELGLP 398


>gi|169839355|ref|ZP_02872543.1| hypothetical protein cdivTM_19937 [candidate division TM7
          single-cell isolate TM7a]
          Length = 37

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 29 GGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
          GG+DSSV A LLK+ GY+VIGVTL+     
Sbjct: 1  GGIDSSVAALLLKQQGYEVIGVTLKHLPDE 30


>gi|149185056|ref|ZP_01863373.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Erythrobacter sp. SD-21]
 gi|148831167|gb|EDL49601.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Erythrobacter sp. SD-21]
          Length = 524

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 53/206 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDS+V A L+    G  +  V      +++                   
Sbjct: 226 DGKVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRM------------------- 266

Query: 74  YDARRVC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +A +V     D  N+     + EE F              G+T     +  R       
Sbjct: 267 NEAEQVVTLFRDHYNIPLVHVNAEEMFLGG---------LEGQT---DPEKKRKFIGGAF 314

Query: 130 LS----VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +       +++ GAD LA G      +          +  +           +    ++ 
Sbjct: 315 IDLFEAEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERM 367

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL ++ K+ VRDL RE+GL 
Sbjct: 368 NMELVEPLRELFKDEVRDLGRELGLP 393


>gi|148546315|ref|YP_001266417.1| GMP synthase [Pseudomonas putida F1]
 gi|226739705|sp|A5VZC3|GUAA_PSEP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148510373|gb|ABQ77233.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas putida F1]
          Length = 525

 Score = 62.9 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T +          F      +
Sbjct: 279 ----ENMGVKVIRADAEKQFLDNLAGEADPEKKRKIIGRTFIDV--------FDA--EAS 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +      LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|260790337|ref|XP_002590199.1| hypothetical protein BRAFLDRAFT_283497 [Branchiostoma floridae]
 gi|229275389|gb|EEN46210.1| hypothetical protein BRAFLDRAFT_283497 [Branchiostoma floridae]
          Length = 688

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 43/214 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             +V+V +SGGVDS+V AALL +      VI V +     RK   +              
Sbjct: 231 KHKVLVLVSGGVDSAVCAALLHKALDKDQVIAVHIDNGFMRKNESQMVYESLT------- 283

Query: 78  RVCDTINVSHYVFDYEERF---RNAV-IVPFASS------YAAGETPLPCVDCNRTVKFS 127
                + +   + +   +F   +  V I                 T  P  +  R +   
Sbjct: 284 ----RLGLDLKMVNAAHQFYNGKTHVPINKADPKGKKRITEQLNRTTNP--EDKRRIIGD 337

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC--------RPMDLER---DQSYF 176
             + V  +     + +   +         G  R  +         +  D  +   + +  
Sbjct: 338 TFMKVADE-----VISEMNLNPEEVFLAQGTLRPDLIESASSLASKNADAIKTHHNDTNL 392

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     +    +  PL D  K+ VR L R++GL 
Sbjct: 393 VRELRDK--GRVVEPLKDFHKDEVRALGRDLGLP 424


>gi|107103288|ref|ZP_01367206.1| hypothetical protein PaerPA_01004357 [Pseudomonas aeruginosa PACS2]
 gi|313109183|ref|ZP_07795152.1| GMP synthase [Pseudomonas aeruginosa 39016]
 gi|310881654|gb|EFQ40248.1| GMP synthase [Pseudomonas aeruginosa 39016]
          Length = 527

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 231 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 279

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 280 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 324

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 325 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 377

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 378 LRELFKDEVRKIGLELGLP 396


>gi|330957542|gb|EGH57802.1| GMP synthase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|330894507|gb|EGH27168.1| GMP synthase [Pseudomonas syringae pv. mori str. 301020]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|320322907|gb|EFW78997.1| GMP synthase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|289626139|ref|ZP_06459093.1| GMP synthase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649045|ref|ZP_06480388.1| GMP synthase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869563|gb|EGH04272.1| GMP synthase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|213971502|ref|ZP_03399613.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudomonas syringae pv. tomato T1]
 gi|301386107|ref|ZP_07234525.1| GMP synthase [Pseudomonas syringae pv. tomato Max13]
 gi|302060193|ref|ZP_07251734.1| GMP synthase [Pseudomonas syringae pv. tomato K40]
 gi|302135136|ref|ZP_07261126.1| GMP synthase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923694|gb|EEB57278.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudomonas syringae pv. tomato T1]
 gi|330965930|gb|EGH66190.1| GMP synthase [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|71737468|ref|YP_273592.1| GMP synthase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487182|ref|ZP_05641223.1| GMP synthase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|91206819|sp|Q48LY0|GUAA_PSE14 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71558021|gb|AAZ37232.1| GMP synthase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320329970|gb|EFW85958.1| GMP synthase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874766|gb|EGH08915.1| GMP synthase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330985028|gb|EGH83131.1| GMP synthase [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009200|gb|EGH89256.1| GMP synthase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|28868657|ref|NP_791276.1| GMP synthase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257474|sp|Q886X5|GUAA_PSESM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28851896|gb|AAO54971.1| GMP synthase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331019365|gb|EGH99421.1| GMP synthase [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|15598964|ref|NP_252458.1| GMP synthase [Pseudomonas aeruginosa PAO1]
 gi|218889947|ref|YP_002438811.1| GMP synthase [Pseudomonas aeruginosa LESB58]
 gi|296387717|ref|ZP_06877192.1| GMP synthase [Pseudomonas aeruginosa PAb1]
 gi|13627134|sp|Q9HXM6|GUAA_PSEAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739703|sp|B7UXJ9|GUAA_PSEA8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|9949940|gb|AAG07156.1|AE004796_1 GMP synthase [Pseudomonas aeruginosa PAO1]
 gi|218770170|emb|CAW25932.1| GMP synthase [Pseudomonas aeruginosa LESB58]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 229 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 278 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 323 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LRELFKDEVRKIGLELGLP 394


>gi|320103478|ref|YP_004179069.1| asparagine synthase [Isosphaera pallida ATCC 43644]
 gi|319750760|gb|ADV62520.1| asparagine synthase [Isosphaera pallida ATCC 43644]
          Length = 296

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 83/249 (33%), Gaps = 53/249 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGG+DS+VVA              L L     A        A  ++ +A  +   
Sbjct: 28  VGVAYSGGIDSTVVA----------QAAHLALGERAVAITAVSDSLASGELEEAVELAKR 77

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V H V    E F +        +Y    +   C  C   + +  L ++  +LG + + 
Sbjct: 78  IGVRHRVI-RTEEFAD-------PNYLRNHSD-RCYFCKSEL-YGRLTALREELGVETIV 127

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
           +G        + D G  R  +    +                   +R PL +  + K  V
Sbjct: 128 SG------ANLDDMGDHRPGLIAAAENG-----------------IRHPLQECGLTKADV 164

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260
           R LA+  GL   DK  S   C   +  Y + V            ++      L R  G+ 
Sbjct: 165 RALAKAWGLPTWDKPASP--CLSSRIAYGEEV------TPQRVRMIDAAELWLKRTTGLN 216

Query: 261 NYTIGQRRG 269
              +   +G
Sbjct: 217 VVRVRYHKG 225


>gi|292900165|ref|YP_003539534.1| GMP synthase [Erwinia amylovora ATCC 49946]
 gi|291200013|emb|CBJ47138.1| GMP synthase (glutamine-hydrolyzing) [Erwinia amylovora ATCC 49946]
          Length = 526

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 35/199 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL R  G  +  V +     R     +     G        
Sbjct: 228 DDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRMNEAEQVMEMFG-------- 279

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
             D   ++      E RF +          A   T  P  +  R +     + V  +   
Sbjct: 280 --DHFGLNIIHVPAENRFLD----------ALAGTDEP--EAKRKIIGRVFVEVFDEEAT 325

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                  LA G      +        +  + +           +    ++    L  PL 
Sbjct: 326 KLTEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVEPLK 378

Query: 194 DMKKESVRDLAREMGLDIA 212
           ++ K+ VR +  E+GL  A
Sbjct: 379 ELFKDEVRKIGLELGLPHA 397


>gi|218132034|ref|ZP_03460838.1| hypothetical protein BACEGG_03659 [Bacteroides eggerthii DSM 20697]
 gi|317477201|ref|ZP_07936441.1| argininosuccinate synthase [Bacteroides eggerthii 1_2_48FAA]
 gi|217985794|gb|EEC52134.1| hypothetical protein BACEGG_03659 [Bacteroides eggerthii DSM 20697]
 gi|316906637|gb|EFV28351.1| argininosuccinate synthase [Bacteroides eggerthii 1_2_48FAA]
          Length = 402

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNE 52

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 53  ENAYKLGAVKYITLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|147676587|ref|YP_001210802.1| ATP-utilizing enzymes [Pelotomaculum thermopropionicum SI]
 gi|146272684|dbj|BAF58433.1| ATP-utilizing enzymes [Pelotomaculum thermopropionicum SI]
          Length = 269

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 53/199 (26%)

Query: 23  VVVAMSGGVDSSVV--AAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V+VA SGGVDS+ V  AA+  LK      + VT+            G      +  +A R
Sbjct: 21  VLVAFSGGVDSTFVLKAAVDALKEK---AVAVTI-----------TGELYPPGETEEAAR 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   +   H + +  +               A   P  C  C +  ++ ++L V R+ G 
Sbjct: 67  LARFLGAEHIIIENRDLDNPTF---------ASNPPDRCYHCKKN-EYGEILKVARERGF 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           + +  G      L   D    R  +    +L                  +  PL D  + 
Sbjct: 117 NAVIDG------LNADDLSDYRPGIRAGQELG-----------------VHSPLKDVGLT 153

Query: 197 KESVRDLAREMGLDIADKS 215
           KE +R L+R  GL  ADK 
Sbjct: 154 KEEIRALSRNFGLPTADKP 172


>gi|78183626|ref|YP_376060.1| GMP synthase [Synechococcus sp. CC9902]
 gi|123582368|sp|Q3B0W1|GUAA_SYNS9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78167920|gb|ABB25017.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus sp. CC9902]
          Length = 528

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      + +D    
Sbjct: 224 QKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMEFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLG- 137
               N++    +  +RF +            G T           +F       +++LG 
Sbjct: 276 -QKFNINVEYINARKRFIDK---------LKGITDPEDKRKIIGTEFIRVFEEESKRLGP 325

Query: 138 ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            D LA G  Y       G +   +      + ++   +  +    +     L  PL  + 
Sbjct: 326 FDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLRFKLVEPLRKLF 383

Query: 197 KESVRDLAREMGLD 210
           K+ VR + R +GL 
Sbjct: 384 KDEVRKVGRNLGLP 397


>gi|85059726|ref|YP_455428.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sodalis glossinidius str. 'morsitans']
 gi|123519089|sp|Q2NS52|GUAA_SODGM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|84780246|dbj|BAE75023.1| GMP synthase [Sodalis glossinidius str. 'morsitans']
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 NDRVILGLSGGVDSSVTAMLLHRAIGERLTCVFVDN--------------GLLRLNEASQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V +     HY  +            F S+ A  + P         V           L  
Sbjct: 273 VMEMFG-DHYGLNIIAVPAE---DRFLSALAGIDDPETKRKTIGRVFVEVFDEQALSLSD 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|194398639|ref|YP_002036823.1| argininosuccinate synthase [Streptococcus pneumoniae G54]
 gi|194358306|gb|ACF56754.1| argininosuccinate synthase [Streptococcus pneumoniae G54]
          Length = 139

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVCD 81
           V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V  
Sbjct: 6   VILAYSGGLDTSVAITWLKKD-YDVVAVCMDV----------GEGKDLDFIHDKALKVGA 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q GA  
Sbjct: 55  ---VESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|110668487|ref|YP_658298.1| NAD(+) synthase (glutamine-hydrolyzing) [Haloquadratum walsbyi DSM
           16790]
 gi|109626234|emb|CAJ52692.1| NAD(+) synthase (glutamine-hydrolyzing) [Haloquadratum walsbyi DSM
           16790]
          Length = 561

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 65/207 (31%), Gaps = 52/207 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DSSV AAL     G  +V G+TL             +     +  DA RV 
Sbjct: 294 VIIGLSGGIDSSVTAALAAEAIGPSNVHGITL-----------PSAITTENNRTDAERVA 342

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYA---AGETPLPCVDC----NRTVKFSDLLSVT 133
             + +         +F    I   + S      G TP          N   +   LL + 
Sbjct: 343 QNLGI---------QFDEIGIEHLSQSLLDAINGVTPGDDTRGITRENVQARVRGLLLMG 393

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                D L      +S   VG              +                     PLG
Sbjct: 394 VSNDLDALVLTPDNKSEAAVG------YCTLYGDAVG-----------------AIAPLG 430

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDI 220
           D  K  V  LA +   DI   +DS  I
Sbjct: 431 DCTKRRVYALAEDFNTDIPTWADSTPI 457


>gi|237800059|ref|ZP_04588520.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806388|ref|ZP_04593092.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022914|gb|EGI02971.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027501|gb|EGI07556.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|149178328|ref|ZP_01856920.1| hypothetical protein PM8797T_01224 [Planctomyces maris DSM 8797]
 gi|148842854|gb|EDL57225.1| hypothetical protein PM8797T_01224 [Planctomyces maris DSM 8797]
          Length = 287

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 73/218 (33%), Gaps = 44/218 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           M ++      +  L +    M R++VA S GVDS+VVA              L   +  +
Sbjct: 1   MSLTAELSRKTSRLTEILARMDRIIVAFSAGVDSTVVA----------QAAFLARGDHAQ 50

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A+       A  +  +A  + + I + H +    E         FA+       P  C  
Sbjct: 51  AATAVSPSLASGEKEEAIHLAELIGIPHRLVTTSE---------FATEEYRANAPNRCFF 101

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           C   + +  L        +  +A   +  + L  G +   R      M    +       
Sbjct: 102 CKTEL-YQIL--------SQSIAGTAWETATLVNGANLDDRGDHRPGMQAASNY------ 146

Query: 180 TTQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKS 215
                   +R PL   +  KE VR LAR   L I DK 
Sbjct: 147 -------HVRSPLIEAEFTKEEVRALARHWELPIWDKP 177


>gi|330872844|gb|EGH06993.1| GMP synthase [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N            GE+     +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LEGES---DPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|312962890|ref|ZP_07777377.1| GMP synthase [Pseudomonas fluorescens WH6]
 gi|311282917|gb|EFQ61511.1| GMP synthase [Pseudomonas fluorescens WH6]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V   +
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAQ 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SNKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|152985472|ref|YP_001346731.1| GMP synthase [Pseudomonas aeruginosa PA7]
 gi|150960630|gb|ABR82655.1| GMP synthase [Pseudomonas aeruginosa PA7]
          Length = 527

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 231 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 279

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 280 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 324

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 325 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 377

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 378 LRELFKDEVRKIGLELGLP 396


>gi|167762029|ref|ZP_02434156.1| hypothetical protein BACSTE_00375 [Bacteroides stercoris ATCC
           43183]
 gi|167700121|gb|EDS16700.1| hypothetical protein BACSTE_00375 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAVKYITLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 111 EIGADAIAHG 120


>gi|15669318|ref|NP_248123.1| GMP synthase subunit B [Methanocaldococcus jannaschii DSM 2661]
 gi|13626885|sp|Q58531|GUAAB_METJA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|1592321|gb|AAB99133.1| GMP synthase (guaA) [Methanocaldococcus jannaschii DSM 2661]
          Length = 310

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 42/203 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSSV A L  +  G  +  V            RKG     +
Sbjct: 14  EIKQQISDRKAIIALSGGVDSSVAAVLTHKAIGDKLTAVF-----VDTGLMRKGEREEVE 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             +      D + ++  V D ++RF NA           G T     +  R +     + 
Sbjct: 69  KTFR-----DKLGLNLIVVDAKDRFLNA---------LKGVT---DPEEKRKIIGKLFID 111

Query: 132 V----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           V       + A+VL  G      +      K    +                     + +
Sbjct: 112 VFEEIAEDIKAEVLVQGTIAPDWIETQGKIKSHHNVA---------------LPHGMVLE 156

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL ++ K+ VR LA+E+GL 
Sbjct: 157 VVEPLRELYKDEVRLLAKELGLP 179


>gi|116051794|ref|YP_789364.1| GMP synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122260940|sp|Q02RS2|GUAA_PSEAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115587015|gb|ABJ13030.1| GMP synthase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 229 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 278 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 323 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LRELFKDEVRKIGLELGLP 394


>gi|148651832|ref|YP_001278925.1| GMP synthase [Psychrobacter sp. PRwf-1]
 gi|148570916|gb|ABQ92975.1| GMP synthase (glutamine-hydrolyzing) [Psychrobacter sp. PRwf-1]
          Length = 532

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 74/218 (33%), Gaps = 39/218 (17%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNS 57
                +    L +   D +V++ +SGGVDSSVVAALL +  G  +  V      L+L+  
Sbjct: 212 DNIIDMRVEQLKEQIGDKQVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEG 271

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETP 114
            +                 +   + + V     D E+RF +A+             G+T 
Sbjct: 272 DQVM---------------QVFAENMGVKVVRVDAEDRFLSALAGESEPEAKRKIIGKTF 316

Query: 115 LPCVDCNRTVKFSDLLSVTRQL--GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
                              R +  G+D        +  +Y       +    +   ++  
Sbjct: 317 -----------IDVFADAARDISQGSDGKPVEFLAQGTIYPDVIESAKSHQGKAHVIKSH 365

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +  +         +L  PL D+ K+ VR L   +GL 
Sbjct: 366 HN--VGGLPDDLQFELVEPLRDLFKDEVRKLGIALGLP 401


>gi|220905538|ref|YP_002480850.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869837|gb|ACL50172.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 303

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 35/234 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D RV+VA+SGG DS  +   L R GY+V G+ + L     ++  +G            R
Sbjct: 46  RDERVLVALSGGKDSLALMLELSRQGYNVTGLHIDLGIPVSSAAARGV---------VER 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    +   + +               +  A      C  C + +K      V    G 
Sbjct: 97  FCAKHGLKLMIREMAAE------GLAIPAVKARLNRPVCSACGK-IKRHFFNKVALDEGF 149

Query: 139 DVLATGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D LATGH +       DD   R     +        DQ   L   ++        PL  +
Sbjct: 150 DALATGHNL-------DDEVARLFSNTLRWDTAYLSDQGPRLD--SEHGFSRKVKPLWRL 200

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVH 247
            +    + A  MG++          C    G  F  +K +   +  A+ G  + 
Sbjct: 201 TEFETANYAFLMGIENHYAP-----CPYSPGASFTTLKGLLQNLEAAMPGRKLD 249


>gi|160914335|ref|ZP_02076554.1| hypothetical protein EUBDOL_00343 [Eubacterium dolichum DSM 3991]
 gi|158433808|gb|EDP12097.1| hypothetical protein EUBDOL_00343 [Eubacterium dolichum DSM 3991]
          Length = 430

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAA+L +  G  ++ V +  +   +  + +      ++  DA  
Sbjct: 135 DKKVLLALSGGVDSSVVAAMLIKAIGKQLVCVHV-NHGLMRKGESESVVEVFKNQMDANL 193

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V           D  ERF               + P       R +             R
Sbjct: 194 V---------YVDASERF--------LKKLENVDDPE----AKRKIIGAEFIRVFEEEAR 232

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G        + + G +   + +           +    +    +L  PL 
Sbjct: 233 KLEGIDFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLPEDLEFELVEPLY 282

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR    E+GL 
Sbjct: 283 YLFKDEVRACGVELGLP 299


>gi|320162464|ref|YP_004175689.1| hypothetical protein ANT_30630 [Anaerolinea thermophila UNI-1]
 gi|319996318|dbj|BAJ65089.1| hypothetical protein ANT_30630 [Anaerolinea thermophila UNI-1]
          Length = 271

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 76/224 (33%), Gaps = 49/224 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS++VAA      Y V+G          A        A  +  +   +   I
Sbjct: 20  IVAFSGGVDSTLVAA----AAYRVLG------ERAVAITAVSESLAESEREETLALARHI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADVLA 142
            + H V  +    ++         Y A  +P+ C  C   +    LL +  RQ     + 
Sbjct: 70  GIRH-VLIHSHELQD-------ERYRA-NSPMRCYWCKNEL--GALLAAYARQHHYSAIL 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G  +       DD    R   + M                Q    R PL    M K  V
Sbjct: 119 DGSNL-------DDLGDVRPGRKAM----------------QEAGFRSPLIEAGMTKADV 155

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           R+ AR +GL   DK      C   +  +   V R N     +G+
Sbjct: 156 REAARLLGLPNWDKP--AMACLASRIPFGMQVTRENLRQVEQGE 197


>gi|78776623|ref|YP_392938.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sulfurimonas denitrificans DSM 1251]
 gi|91206838|sp|Q30TH8|GUAA_SULDN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78497163|gb|ABB43703.1| GMP synthase (glutamine-hydrolyzing) [Sulfurimonas denitrificans
           DSM 1251]
          Length = 516

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 36/195 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  +SGGVDSSVVAA+L    Y+ IG      +               +      V  
Sbjct: 221 KVLCGLSGGVDSSVVAAML----YEAIG------DQLVPVFVDNGLLRKGEREQVEEVFK 270

Query: 82  -TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
             + V   V D  E F +    V  P       G T              +     ++  
Sbjct: 271 INLKVPLVVVDARENFLSKLAGVSDPEKKRKIIGHTF-----------IEEFEKEAKKHD 319

Query: 137 GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G   LA G  Y      +  +G        P ++ +   + +         +L  PL ++
Sbjct: 320 GIKFLAQGTLYPDVIESISVNG--------PSEVIKSH-HNVGGLPDWMDFELIEPLREL 370

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 371 FKDEVRKIGLELGLP 385


>gi|297569514|ref|YP_003690858.1| GMP synthase, large subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925429|gb|ADH86239.1| GMP synthase, large subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 518

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 37/195 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L    +                 
Sbjct: 223 VILGLSGGVDSSVAAALIHRAIGEQLTCVFVDTGLLRLGEGDQVMATF------------ 270

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               + + V     D EERF +A++                +  N  +  +       +L
Sbjct: 271 ---AENMGVKVLRVDAEERFLSALVDVEDPEQKRK------IIGNLFI--TIFEEAAGKL 319

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +    +           +    ++    L  PL ++
Sbjct: 320 EDARWLAQGTIYPDVIESAGGKTGKAQNIKSHHN-------VGGLPEKMKLALLEPLREL 372

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 373 FKDEVRALGDELGLP 387


>gi|225025729|ref|ZP_03714921.1| hypothetical protein EIKCOROL_02633 [Eikenella corrodens ATCC
           23834]
 gi|224941510|gb|EEG22719.1| hypothetical protein EIKCOROL_02633 [Eikenella corrodens ATCC
           23834]
          Length = 522

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSV AAL+ R  G  +  V                      + +A  V  
Sbjct: 221 VILGLSGGVDSSVAAALIHRAIGDQLTCVF--------------VDHGLLRLNEAENVMK 266

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQ 135
              D + V     D  E+F             AG T     +  R +  ++ + V    +
Sbjct: 267 MFADNLGVRVIHVDASEQFMAK---------LAGVT---DPEQKRKIIGAEFIEVFDAEE 314

Query: 136 L---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                A  LA G      +       ++    +           +    +     L  PL
Sbjct: 315 KKLANAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 368 RDLFKDEVRELGVALGLP 385


>gi|304321565|ref|YP_003855208.1| GMP synthase [Parvularcula bermudensis HTCC2503]
 gi|303300467|gb|ADM10066.1| GMP synthase [Parvularcula bermudensis HTCC2503]
          Length = 524

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V A L+    G  +  V            R+G          AR 
Sbjct: 227 DGRVICGLSGGVDSAVAAVLIHEAIGDQLTCVF-----VDTGLMRQGE---------ARA 272

Query: 79  VCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V D      ++     + E+ F         S     E P       R +     + V  
Sbjct: 273 VVDLFREHYHIPLVHVEAEDLF--------LSKLEGVEDPER----KRKIIGGTFIDVFE 320

Query: 133 --TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +++  D LA G      +          +  +           +    ++    L  
Sbjct: 321 AEAKKIKGDFLAQGTLYPDVIESVSFDGGPSVTIKSHHN-------VGGLPERMNLKLVE 373

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+GL 
Sbjct: 374 PLRELFKDEVRHLGQELGLP 393


>gi|195475939|ref|XP_002090240.1| GE12995 [Drosophila yakuba]
 gi|194176341|gb|EDW89952.1| GE12995 [Drosophila yakuba]
          Length = 683

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 28/203 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSV AALL+R  Y   +I V +     RK    K      + + D    
Sbjct: 230 KVLLLVSGGVDSSVCAALLRRALYPNQIIAVHVDNGFMRKNESEK----VERSLRD---- 281

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  ++
Sbjct: 282 ---IGIDLIVRKEGYTFLTGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFVKV 336

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC------D 187
             DV+A    ++    +   G  R  +            ++          +        
Sbjct: 337 TNDVVAE-LKLKPEEVMLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNAGR 395

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL D  K+ VRDL  ++GL 
Sbjct: 396 VVEPLCDFHKDEVRDLGNDLGLP 418


>gi|161527848|ref|YP_001581674.1| ExsB family protein [Nitrosopumilus maritimus SCM1]
 gi|160339149|gb|ABX12236.1| ExsB family protein [Nitrosopumilus maritimus SCM1]
          Length = 265

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 54/224 (24%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T+LN L+ +      +V++A+SGGVDS++VA       Y       +L +   A      
Sbjct: 2   TKLNELE-NWFADKNKVMIALSGGVDSALVAY----AAYQ------KLGDFAIAVTADYK 50

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL---PCVDCNRT 123
             + +++  A+++C  I ++ +  DY+E                  T      C  C   
Sbjct: 51  TLSEEELQTAKQICSEIGITQFFLDYDELENEEF------------TKNDSTRCFHCRLE 98

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +    LL + ++   DV+  G        + D G+ R      +D  R            
Sbjct: 99  LGV-HLLKLAKEHHVDVIVDG------TNLDDLGEYRP----GIDALRQNG--------- 138

Query: 184 QLCDLRFPL--GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
               +R PL   ++ K  +R +A+ +GL + DK  +   C   +
Sbjct: 139 ----IRSPLVETNLSKSQIRHIAKSVGLSVHDKPSN--SCLASR 176


>gi|186681209|ref|YP_001864405.1| GMP synthase [Nostoc punctiforme PCC 73102]
 gi|226739650|sp|B2J9G3|GUAA_NOSP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|186463661|gb|ACC79462.1| GMP synthase, large subunit [Nostoc punctiforme PCC 73102]
          Length = 540

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 31/198 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGV-----TLQLYNSRKASKRKGSCCAGQDV 73
           + RV++A+SGGVDSS +A LL K  G  +  V      ++ Y   +  K           
Sbjct: 236 EKRVLLALSGGVDSSTLAFLLYKAIGEQLTCVFIDQGFMRKYEPERLVKLFQ-------- 287

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +  ++     +  +RF   V                    +  +        +
Sbjct: 288 -------EQFHIPVEYVNARDRFLAKVAGVTDPEEKRRR------IGHEFINV--FEETS 332

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++LG  D LA G      +   D     +   R     +   + +    +     L  PL
Sbjct: 333 KRLGHFDYLAQGTLYPDVIESADTNADPQTGERVAVKIKSH-HNVGGLPKDLRFKLVEPL 391

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR + R +GL 
Sbjct: 392 RKLFKDEVRKVGRSIGLP 409


>gi|325686637|gb|EGD28663.1| argininosuccinate synthase [Streptococcus sanguinis SK72]
          Length = 399

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|77460808|ref|YP_350315.1| GMP synthase [Pseudomonas fluorescens Pf0-1]
 gi|91206822|sp|Q3K7D0|GUAA_PSEPF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77384811|gb|ABA76324.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas fluorescens
           Pf0-1]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + E++F N           AGE      +  R +     + V    
Sbjct: 278 ---AENMGVKVIRANAEDQFLNN---------LAGE---ADPEKKRKIIGRTFIDVFDAE 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SCKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|327472488|gb|EGF17919.1| argininosuccinate synthase [Streptococcus sanguinis SK408]
          Length = 399

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|170290811|ref|YP_001737627.1| thiamine biosynthesis/tRNA modification protein ThiI [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174891|gb|ACB07944.1| thiamine biosynthesis/tRNA modification protein ThiI [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 373

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 56/238 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+  +SGG+DS V A LL R G  +I +  +  ++ + +  K      +        
Sbjct: 174 QGKVLALISGGIDSPVAAWLLMRRGAQIIPLHFRKSSAEEETFIKIVNVLRRY------- 226

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---SVTRQL 136
             +  V       E          F S  +       C+ C R +    LL    + +++
Sbjct: 227 --SYGVKMEPMILEH-------GEFLSEISREAREWTCLLCKRRM----LLTANRIAKEI 273

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM 195
           GA  + TG  +                         Q+        + L    F PL  M
Sbjct: 274 GAHGIVTGDSLGQVAS--------------------QTLANLEVESRCLEKPVFRPLIGM 313

Query: 196 KKESVRDLAREMGLDIADKSDS-QDIC-FVQQ--------GKYFDVVKRINAGIALEG 243
            KE +  +A+E+G    D S S ++ C F  +          +  V ++I     + G
Sbjct: 314 DKEDIVKIAKEIG--TYDISISYKESCPFAPKRPKTLANWRNFLKVAEKIGRKEIISG 369


>gi|330807661|ref|YP_004352123.1| putative Transcription factor, ExsB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375769|gb|AEA67119.1| putative Transcription factor, ExsB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + EE+F N           AGE+     +  R +     + V   +
Sbjct: 278 ---AENMGVKVIRANAEEQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAQ 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SNKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|170755404|ref|YP_001779793.1| hypothetical protein CLD_0620 [Clostridium botulinum B1 str. Okra]
 gi|169120616|gb|ACA44452.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 240

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS V+  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSVVLLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V           +   PC  C   ++ 
Sbjct: 61  TMTGADFSPLENVCSNINVPLYI--YKTPIKEIVFD-------LRKEKNPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKELGCNKIALGHHKNDAIET 137


>gi|153940664|ref|YP_001389528.1| hypothetical protein CLI_0220 [Clostridium botulinum F str.
           Langeland]
 gi|152936560|gb|ABS42058.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|295317628|gb|ADF98005.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 240

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS V+  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSVVLLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V           +   PC  C   ++ 
Sbjct: 61  TMTGADFSPLENVCSNINVPLYI--YKTPIKEIVFD-------LRKEKNPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKELGCNKIALGHHKNDAIET 137


>gi|16331412|ref|NP_442140.1| GMP synthase [Synechocystis sp. PCC 6803]
 gi|1346218|sp|P49057|GUAA_SYNY3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1001583|dbj|BAA10210.1| GMP synthetase [Synechocystis sp. PCC 6803]
          Length = 542

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG      +++D    
Sbjct: 238 DRRVLLALSGGVDSSTLAFLLHRA----IGDNLTCMFIDQGFMRKGEPERLVELFD---- 289

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++     +  +RF      V  P       G                     + +L
Sbjct: 290 -HQFHIPVQYVNARDRFLKQLEGVTDPEEKRRLIGHEF-----------IQVFEEESNRL 337

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D LA G      +   D     +   R     +   + +    +     L  PL  +
Sbjct: 338 GPFDYLAQGTLYPDVIESADSNVDPKTGERVAVKIKSH-HNVGGLPKNLRFKLVEPLRKL 396

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L R +GL 
Sbjct: 397 FKDEVRKLGRSIGLP 411


>gi|319782264|ref|YP_004141740.1| GMP synthase, large subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168152|gb|ADV11690.1| GMP synthase, large subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 520

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 31/201 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +V+ A+SGGVDSSV A L+       +G         + +         +  
Sbjct: 216 IRKQVGKGKVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKD 263

Query: 74  YDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             A  V    +  N+   + +  +RF          +      P         +      
Sbjct: 264 EAAGVVAMFREHYNLPLILVNASDRF--------IDALEGESDPEKKRKTIGRLFIEVFE 315

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L GA+ LA G      +          +  +           +     +    L 
Sbjct: 316 EEAKKLGGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMNMQLV 368

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L +E+GL 
Sbjct: 369 EPLRELFKDEVRALGKELGLP 389


>gi|148270897|ref|YP_001245357.1| ExsB family protein [Thermotoga petrophila RKU-1]
 gi|147736441|gb|ABQ47781.1| ExsB family protein [Thermotoga petrophila RKU-1]
          Length = 268

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 41/208 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L+   +  +VVV  SGGVDS+++A L              L  +  A          +++
Sbjct: 8   LEALKEKKKVVVMFSGGVDSTLLAKLTHEA----------LGENSVALTIDSPVIPRKEI 57

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A+R+   I + H   +  E     +I            P  C  C R ++ S + +  
Sbjct: 58  EKAKRLAGLIGIRHEFIELNELKSRHLIE---------NPPDRCYLC-RKLRDSVVKNWA 107

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G +V+A G      L   D    R  +    +      +  F               
Sbjct: 108 KEHGFEVIADG------LNFSDLQDYRPGVKASTEDGIWHPFIEFEV------------- 148

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDIC 221
              KE +RD +R++ L   +K     +C
Sbjct: 149 --TKEEIRDFSRKLSLPTWNKPAMACLC 174


>gi|57168146|ref|ZP_00367285.1| GMP synthase [Campylobacter coli RM2228]
 gi|305431705|ref|ZP_07400874.1| GMP synthase [Campylobacter coli JV20]
 gi|57020520|gb|EAL57189.1| GMP synthase [Campylobacter coli RM2228]
 gi|304445300|gb|EFM37944.1| GMP synthase [Campylobacter coli JV20]
          Length = 511

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
             +V+ A+SGGVDSSVVAALL    K     VI V +     R   K +           
Sbjct: 215 KDKVLCAVSGGVDSSVVAALLANAIKDQ---VIVVFVDNGLLRSDEKEQVEFMFK----- 266

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +T+ ++    D  + F + +                 +  N  +         ++
Sbjct: 267 -----NTLGINLISIDASKIFLDRLAGVTDPEQKRK------IIGNTFI--EIFEEEAKK 313

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    ++    L  PL +
Sbjct: 314 HKDVKFLAQGTLYTDIIESSVIGASKTI--KSHHN-------VGGLPEKMNLKLVEPLKE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRALGIELGLS 380


>gi|242310391|ref|ZP_04809546.1| NH(3)-dependent NAD synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239522789|gb|EEQ62655.1| NH(3)-dependent NAD synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 255

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 45/186 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV  +SGG+DS+VVA L K+  G ++ G+ +                +   + DA  +C+
Sbjct: 27  VVFGLSGGIDSAVVAVLCKQAFGDNIHGILM-----------PSLQSSTNSIQDALELCE 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
           +  + + +   E+  +      F  +   G    P    N    ++   L          
Sbjct: 76  SFKIPYSICPLEKPQKA-----FLQT-LEGLQNNPSRIGNLCARIRMIYLYDYA------ 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                 +    L +G   K   ++              + T    L     P+G++ K  
Sbjct: 124 ------FANQSLVIGTSNKSEILL-------------GYGTIFGDLACAINPIGNLYKTE 164

Query: 200 VRDLAR 205
           +  +A+
Sbjct: 165 IFKIAK 170


>gi|238019954|ref|ZP_04600380.1| hypothetical protein VEIDISOL_01830 [Veillonella dispar ATCC 17748]
 gi|237863478|gb|EEP64768.1| hypothetical protein VEIDISOL_01830 [Veillonella dispar ATCC 17748]
          Length = 255

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 82/241 (34%), Gaps = 42/241 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG DS++VAAL K   G + V+GV +                   D+ DA+ V +
Sbjct: 30  VVGISGGKDSTIVAALCKEALGAERVVGVLMPN-------------GIQSDIDDAKTVVN 76

Query: 82  TINVSHYVFDYEERFR---NAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSVTRQLG 137
            + +SH + +    +    NA+I         G   L      N   +            
Sbjct: 77  HLGISHIIVNIGAAYEALTNAIIQGEGYEVVTGRNDLSRDAAINTPPRLR---------- 126

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +AT + +   L    +G R    C   +      Y  ++T          PL ++  
Sbjct: 127 ---MATLYAVGQNL---PNGARVANTCNGSED-----YVGYSTKYGDSAGDFSPLANLVV 175

Query: 198 ESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
           E VR + R + +   + DK+ S  +              +       G I  L  +    
Sbjct: 176 EEVRQIGRLLDIPKYLVDKTPSDGLSGQSDEDKLGFTYAVLDRYIRTGQIDDLETKERIN 235

Query: 256 H 256
           H
Sbjct: 236 H 236


>gi|328944629|gb|EGG38790.1| argininosuccinate synthase [Streptococcus sanguinis SK1087]
          Length = 399

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|315230927|ref|YP_004071363.1| thiamine biosynthesis ThiI-like protein [Thermococcus barophilus
           MP]
 gi|315183955|gb|ADT84140.1| thiamine biosynthesis ThiI-like protein [Thermococcus barophilus
           MP]
          Length = 381

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 83/235 (35%), Gaps = 51/235 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV +SGG+DS V A L+ + G +V+ V +                  + +   R++
Sbjct: 180 QGKVVVLLSGGIDSPVAAFLMMKRGCEVVPVHI--------------YMGEKTLEKVRKI 225

Query: 80  CDTINVSHY------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +   HY      +   + + R  V+         G     C+ C + +   +   + 
Sbjct: 226 WNQLKKYHYGGKSDLIV-IKPKERERVLRKLKE---LGRENYTCIFC-KFMMVENADKIA 280

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+ GA  +  G  +        +                  Y +   +   +     PL 
Sbjct: 281 REFGAKGIVMGDSLGQVASQTLENM----------------YIVSQASDLPIYR---PLI 321

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQ-----QGKYFDVVKRINAGIALE 242
            + KE +  +A+E+G  +++   +  ++ F+      +G + +  K        E
Sbjct: 322 GLDKEEIVGIAKEIGTFELSTLPE-DEVPFIPKHPVIRGSWEEFKKLYREIFGEE 375


>gi|149203862|ref|ZP_01880831.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseovarius sp. TM1035]
 gi|149142979|gb|EDM31021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseovarius sp. TM1035]
          Length = 522

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            R+G   A + V   R 
Sbjct: 224 DKQVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDHGLLRQGE--ADEVVAMFR- 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             D  N+     D  E F                 P         +          Q+ G
Sbjct: 276 --DNYNIPLIHADEAELF--------LGELEGVSDPETKRKTIGRLFIDVFQKYASQIEG 325

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 326 AEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 378

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 379 DEVRALGRELGLPQS---------FIGRHPF------PGPGLAIRCPGEI 413


>gi|39995758|ref|NP_951709.1| NAD synthetase [Geobacter sulfurreducens PCA]
 gi|39982522|gb|AAR33982.1| NAD+ synthetase [Geobacter sulfurreducens PCA]
 gi|298504768|gb|ADI83491.1| NAD+ synthetase [Geobacter sulfurreducens KN400]
          Length = 273

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 46/203 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA L     G D V  + +                  +    AR V
Sbjct: 30  KAVLGLSGGIDSALVAFLAAEALGPDNVHAIIM-----------PYRTSNPESEAHARLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + ++H V +         I P   +Y    T  P  D  R         + R+    
Sbjct: 79  AEQLGINHEVIE---------ITPMVDAYF---TRFPDADNMRRGN-----KMARERM-- 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +   H       V     +  ++              + T    +     P+GD+ K  
Sbjct: 120 TILYDHSAALGALVLGTSNKTELLL------------GYGTLYGDMASALNPIGDIYKTQ 167

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           V  L+  MG+   I +K  S D+
Sbjct: 168 VWQLSETMGVPRQIIEKKPSADL 190


>gi|256823047|ref|YP_003147010.1| GMP synthase large subunit [Kangiella koreensis DSM 16069]
 gi|256796586|gb|ACV27242.1| GMP synthase, large subunit [Kangiella koreensis DSM 16069]
          Length = 525

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  VV+ +SGGVDSSV A LL R  G  +  V      L+L  + +     G        
Sbjct: 227 DDEVVLGLSGGVDSSVTAMLLHRAIGKQLTCVFVDNGLLRLNEADQVMAMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF + +            T  P  +  R +     + + 
Sbjct: 279 -------DNFGLNIIRIDAEDRFLDELKG----------TDEP--EAKRKIIGKVFIDIF 319

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +       A  LA G      +        +  + +           +    ++    L
Sbjct: 320 DEESKKLTNAQWLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEKMNLKL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLRELFKDEVRKIGLELGLP 394


>gi|327462706|gb|EGF09028.1| argininosuccinate synthase [Streptococcus sanguinis SK1057]
          Length = 399

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|324989808|gb|EGC21751.1| argininosuccinate synthase [Streptococcus sanguinis SK353]
          Length = 399

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           RV++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   RVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|146077331|ref|XP_001463246.1| tRNA-methyl transferase [Leishmania infantum JPCM5]
          Length = 226

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 47/157 (29%)

Query: 259 IINYTIGQRRGL------GVAMGEPLFVVYL------------DK--------NSSRVIV 292
              +T+GQR  L      G       +V               DK            V  
Sbjct: 15  AYAFTLGQRVRLCRRTVDGRVREAAYYVADKVLAPLPSSDMSDDKAVPVRLLAEVRVVAQ 74

Query: 293 GPRESLEVHRIYLREINWLGDGL--------FEDAVVDGFKCFVKIRSSQDPVPVFVQ-- 342
                L   +  +  ++W             + +  V G +C    R  +   P  V+  
Sbjct: 75  WNHALLYASQATVASLHWWLPPPVLHQRAVAYHERGVYGLRCHCCTRHQEALQPATVEWE 134

Query: 343 -RNDD----------GVYVDFEKSEVGVASGQACVFY 368
             +++             V F+     V  GQA V Y
Sbjct: 135 AADEELSADAEVRVRRARVHFDAPLRAVTPGQALVAY 171


>gi|325695445|gb|EGD37345.1| argininosuccinate synthase [Streptococcus sanguinis SK150]
          Length = 399

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|313899439|ref|ZP_07832949.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
 gi|312955727|gb|EFR37385.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
          Length = 430

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 30/194 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD +V++A+SGGVDSSVVAALL +  G  +  V +  +   +  + +      ++  DA 
Sbjct: 134 KDRKVLLALSGGVDSSVVAALLLKAIGKQLYCVHV-NHGLMRKGESESVIEVFKNQMDA- 191

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                   +    D  ERF   +                 +     ++        R+L 
Sbjct: 192 --------NLIYVDASERFLGKLKDVAEPEQKRK------IIGAEFIRV--FEEEARKLK 235

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G        + + G +   + +           +         +L  PL  + 
Sbjct: 236 GIDFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLPDDLAFELVEPLRQLF 285

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+GL 
Sbjct: 286 KDEVRACGLELGLP 299


>gi|331701129|ref|YP_004398088.1| argininosuccinate synthase [Lactobacillus buchneri NRRL B-30929]
 gi|329128472|gb|AEB73025.1| Argininosuccinate synthase [Lactobacillus buchneri NRRL B-30929]
          Length = 431

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 35/202 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++A SGG+D+SV  A LK  GYDV+   + +   +     K            ++
Sbjct: 3   ENNKVILAYSGGLDTSVAIAWLKDKGYDVVACCINVGEGKDLDFIK------------QK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
             +   V  YV D  + F +        + A  E   P +   +R +    L+ +  Q  
Sbjct: 51  ALNVGAVKAYVIDALDEFADNYAAVALKANAMYEGSYPLISALSRPLISKTLVQIAHQEH 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
           A  +A G         G+D  R  +    +D               QL  +  P+     
Sbjct: 111 AVAVAHG-----CTGKGNDQVRFEVAIHGLDP--------------QLE-VLSPVRDWHW 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            +E   + A++  + I    DS
Sbjct: 151 SREQEIEYAKDHNIPIPIDLDS 172


>gi|159041674|ref|YP_001540926.1| NAD+ synthetase [Caldivirga maquilingensis IC-167]
 gi|157920509|gb|ABW01936.1| NAD+ synthetase [Caldivirga maquilingensis IC-167]
          Length = 285

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 41/189 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DSSV A+LL R  G D V+ + +                  +DV DA ++  
Sbjct: 39  VIGLSGGIDSSVTASLLVRALGKDKVLALIM-----------PYKTTPPEDVKDAIQLAQ 87

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V + V +         I P  +S+++    +P    +  V   ++L+  R      +
Sbjct: 88  MLGVKYDVVN---------IDPIRASFSS---TIPAFKESEIVANGNILARIRM----TI 131

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              +Y      +      +  +      +    Y               P+GD+ K  VR
Sbjct: 132 LY-YYANLNNMIVAGTGDKSELLIGYFTK----YGDGGVD-------ILPIGDVYKSQVR 179

Query: 202 DLAREMGLD 210
            L R +GL 
Sbjct: 180 MLGRRLGLP 188


>gi|29349168|ref|NP_812671.1| argininosuccinate synthase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571331|ref|ZP_04848738.1| argininosuccinate synthase [Bacteroides sp. 1_1_6]
 gi|298386866|ref|ZP_06996421.1| argininosuccinate synthase [Bacteroides sp. 1_1_14]
 gi|29341076|gb|AAO78865.1| argininosuccinate synthase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839284|gb|EES67368.1| argininosuccinate synthase [Bacteroides sp. 1_1_6]
 gi|298260540|gb|EFI03409.1| argininosuccinate synthase [Bacteroides sp. 1_1_14]
          Length = 402

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V        N+   S+ +             
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEV---YAACANTGGFSEEQLKTNEEN------ 54

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 55  --AYKLGAVKYVTLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|209523582|ref|ZP_03272136.1| GMP synthase, large subunit [Arthrospira maxima CS-328]
 gi|209495987|gb|EDZ96288.1| GMP synthase, large subunit [Arthrospira maxima CS-328]
          Length = 541

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 65/191 (34%), Gaps = 17/191 (8%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RK        ++DAR  
Sbjct: 237 DKRVLLALSGGVDSSTLAFLLHQA----IGDQLTCMFIDQGFMRKYEPEKLVKLFDAR-- 290

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
               ++S    +  +RF   +                 +               R    D
Sbjct: 291 ---FHISVEYVNARDRFLEKLKGVTDPEEKRKRIGAEFIQVFEE-------ESARLGPFD 340

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +   D     +   R     +   + +    +     L  PL  + K+ 
Sbjct: 341 YLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFKDE 399

Query: 200 VRDLAREMGLD 210
           VR + R +GL 
Sbjct: 400 VRKVGRSIGLP 410


>gi|85375169|ref|YP_459231.1| GMP synthase [Erythrobacter litoralis HTCC2594]
 gi|84788252|gb|ABC64434.1| GMP synthase [Erythrobacter litoralis HTCC2594]
          Length = 524

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 67/201 (33%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDS+V A L+    G  +  V            R+G          A +
Sbjct: 226 DGKVICGLSGGVDSAVAAVLIHEAIGEQLTCVF-----VDHGLMRQGE---------AEQ 271

Query: 79  VCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--- 131
           V        N+     D E+ F             AG T     +  R       +    
Sbjct: 272 VVSLFRGHYNIPLVHVDAEDMFLGG---------LAGVT---DPEKKRKFIGGAFIDLFE 319

Query: 132 -VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              R++ GAD LA G      +          +  +           +    ++    L 
Sbjct: 320 EEARKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLV 372

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L RE+GL 
Sbjct: 373 EPLRELFKDEVRALGRELGLP 393


>gi|323350585|ref|ZP_08086247.1| argininosuccinate synthase [Streptococcus sanguinis VMC66]
 gi|322123267|gb|EFX94952.1| argininosuccinate synthase [Streptococcus sanguinis VMC66]
          Length = 399

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|305432442|ref|ZP_07401604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
 gi|304444481|gb|EFM37132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
          Length = 327

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R        R   M +   L  D+         + +C    PL    K   
Sbjct: 108 IITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL---TKPE- 155

Query: 201 R---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R                     +LA + GL+  +       C +         K+I   I
Sbjct: 156 REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFI 210

Query: 240 ALEGDIVHLNGQIL--GRH 256
             + D+   + Q+L  GRH
Sbjct: 211 EFDKDMQVNDAQLLKYGRH 229


>gi|283957019|ref|ZP_06374491.1| hypothetical protein C1336_000330082 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791520|gb|EFC30317.1| hypothetical protein C1336_000330082 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 327

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R        R   M +   L  D+         + +C    PL    K   
Sbjct: 108 IITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL---TKPE- 155

Query: 201 R---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R                     +LA + GL+  +       C +         K+I   I
Sbjct: 156 REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFI 210

Query: 240 ALEGDIVHLNGQIL--GRH 256
             + D+   + Q+L  GRH
Sbjct: 211 EFDKDMQVNDAQLLKYGRH 229


>gi|237752180|ref|ZP_04582660.1| NH(3)-dependent nad() synthetase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376422|gb|EEO26513.1| NH(3)-dependent nad() synthetase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 260

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 41/200 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV  +SGG+DS+VVA L +          L    + KA     +  + + + DA  +C  
Sbjct: 35  VVFGLSGGIDSAVVARLCQ----------LAFKKTHKALMLPSNQSSKESLQDALELCQK 84

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +++ +   +E              +A    LP +  ++ ++  +L +  R +    L 
Sbjct: 85  FGIAYEILSIKEP------------QSAFLQTLPNIAQSQ-IRLGNLSARLRMI---CLY 128

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
              + ++ L VG   K   ++              + T    L     P+G++ K  + +
Sbjct: 129 DYAFAKNALVVGTSNKSEILL-------------GYGTIFGDLACAINPIGNLYKTEIYE 175

Query: 203 LAREMGLD--IADKSDSQDI 220
           LA+ +G+   I  K  S D+
Sbjct: 176 LAKVLGIPQSILQKPPSADL 195


>gi|153809012|ref|ZP_01961680.1| hypothetical protein BACCAC_03315 [Bacteroides caccae ATCC 43185]
 gi|237715258|ref|ZP_04545739.1| argininosuccinate synthase [Bacteroides sp. D1]
 gi|237719636|ref|ZP_04550117.1| argininosuccinate synthase [Bacteroides sp. 2_2_4]
 gi|260172095|ref|ZP_05758507.1| argininosuccinate synthase [Bacteroides sp. D2]
 gi|262405102|ref|ZP_06081652.1| argininosuccinate synthase [Bacteroides sp. 2_1_22]
 gi|293371667|ref|ZP_06618078.1| putative argininosuccinate synthase [Bacteroides ovatus SD CMC 3f]
 gi|294644507|ref|ZP_06722264.1| putative argininosuccinate synthase [Bacteroides ovatus SD CC 2a]
 gi|294808651|ref|ZP_06767385.1| putative argininosuccinate synthase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298482465|ref|ZP_07000651.1| argininosuccinate synthase [Bacteroides sp. D22]
 gi|299147458|ref|ZP_07040523.1| argininosuccinate synthase [Bacteroides sp. 3_1_23]
 gi|315920406|ref|ZP_07916646.1| argininosuccinate synthase [Bacteroides sp. D2]
 gi|149128345|gb|EDM19564.1| hypothetical protein BACCAC_03315 [Bacteroides caccae ATCC 43185]
 gi|229444567|gb|EEO50358.1| argininosuccinate synthase [Bacteroides sp. D1]
 gi|229450905|gb|EEO56696.1| argininosuccinate synthase [Bacteroides sp. 2_2_4]
 gi|262355977|gb|EEZ05067.1| argininosuccinate synthase [Bacteroides sp. 2_1_22]
 gi|292633364|gb|EFF51934.1| putative argininosuccinate synthase [Bacteroides ovatus SD CMC 3f]
 gi|292640148|gb|EFF58409.1| putative argininosuccinate synthase [Bacteroides ovatus SD CC 2a]
 gi|294444090|gb|EFG12823.1| putative argininosuccinate synthase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295088136|emb|CBK69659.1| argininosuccinate synthase [Bacteroides xylanisolvens XB1A]
 gi|298271444|gb|EFI13019.1| argininosuccinate synthase [Bacteroides sp. D22]
 gi|298514736|gb|EFI38620.1| argininosuccinate synthase [Bacteroides sp. 3_1_23]
 gi|313694281|gb|EFS31116.1| argininosuccinate synthase [Bacteroides sp. D2]
          Length = 402

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V        N+   S+ +             
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEV---YAACANTGGFSEEQLKTNEEN------ 54

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 55  --AYKLGAVKYVTLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|148925774|ref|ZP_01809462.1| hypothetical protein Cj8486_1677 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845784|gb|EDK22875.1| hypothetical protein Cj8486_1677 [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 327

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R        R   M +   L  D+         + +C    PL    K   
Sbjct: 108 IITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL---TKPE- 155

Query: 201 R---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R                     +LA + GL+  +       C +         K+I   I
Sbjct: 156 REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFI 210

Query: 240 ALEGDIVHLNGQIL--GRH 256
             + D+   + Q+L  GRH
Sbjct: 211 EFDKDMQVNDAQLLKYGRH 229


>gi|57238644|ref|YP_179775.1| hypothetical protein CJE1805 [Campylobacter jejuni RM1221]
 gi|57167448|gb|AAW36227.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
 gi|315059083|gb|ADT73412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 327

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R        R   M +   L  D+         + +C    PL    K   
Sbjct: 108 IITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL---TKPE- 155

Query: 201 R---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R                     +LA + GL+  +       C +         K+I   I
Sbjct: 156 REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFI 210

Query: 240 ALEGDIVHLNGQIL--GRH 256
             + D+   + Q+L  GRH
Sbjct: 211 EFDKDMQVNDAQLLKYGRH 229


>gi|319936290|ref|ZP_08010708.1| GMP synthase domain-containing protein [Coprobacillus sp. 29_1]
 gi|319808666|gb|EFW05210.1| GMP synthase domain-containing protein [Coprobacillus sp. 29_1]
          Length = 433

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +  V                     +  D   
Sbjct: 138 DKKVLLALSGGVDSSVVAALLVKAIGKQLYCVH-----------VNHGLMRKGESEDVVE 186

Query: 79  VC-DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  + ++ +    D  ERF      V  P        E     +     ++        R
Sbjct: 187 VFQNQLDANLVYVDATERFLTKLENVADP--------EQKRKIIGA-EFIRV--FEEEAR 235

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G +   M +           +    +    +L  PL 
Sbjct: 236 KLDGIEFLAQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLF 285

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR    E+GL 
Sbjct: 286 QLFKDEVRACGVELGLP 302


>gi|304439805|ref|ZP_07399702.1| GMP synthase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371711|gb|EFM25320.1| GMP synthase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 506

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSVVAALL +  G  +  +     +     K +G      
Sbjct: 204 EIKEKVGDKKVLLALSGGVDSSVVAALLSKAVGEQLTCIF---VDHGLMRKNEGD----- 255

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +         +     D E+RF      V+ P     A GE                
Sbjct: 256 ---EVEAAFKDSGMHFIRVDAEKRFLERLKGVVDPEEKRKAIGEEF-----------IRV 301

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
                +++G  D LA G        + + G     + +           +          
Sbjct: 302 FEEEGKKIGSVDFLAQG---TIYPDIIESGIGDAAVIKSHHN-------VGGLPDFVDFK 351

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+ VR L RE+ L 
Sbjct: 352 EIVEPLCMLFKDEVRRLGRELDLP 375


>gi|160913582|ref|ZP_02076272.1| hypothetical protein EUBDOL_00058 [Eubacterium dolichum DSM 3991]
 gi|158434043|gb|EDP12332.1| hypothetical protein EUBDOL_00058 [Eubacterium dolichum DSM 3991]
          Length = 513

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 33/202 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   + +V++ +SGGVDSSVVAALL +     IG  L          RKG        
Sbjct: 209 IRKKVGNDKVLLGLSGGVDSSVVAALLHKA----IGDQLICMFIDHGLLRKGE------- 257

Query: 74  YDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSD 128
             A  V +T      ++    D +ERF + ++                    +  VK   
Sbjct: 258 --AESVMETFGREMNINLVKIDAKERFLSKLVGVSDPEAKRKIIGNEFVYTFDEEVK--- 312

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              +T       LA G        V + G       +           +    +     L
Sbjct: 313 --KLTSGENIKWLAQG---TLYTDVIESGTHTAQTIKSHHN-------VGGLPEDMQFQL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR L   +GL 
Sbjct: 361 IEPLNTLFKDEVRALGEALGLP 382


>gi|153010381|ref|YP_001371595.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|151562269|gb|ABS15766.1| GMP synthase, large subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 523

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        IG  +T  L +     K + +    Q V   R  
Sbjct: 227 KVICALSGGVDSSVAALLAHEA----IGDQLTCILVDHGLMRKNEAN----QVVEMFR-- 276

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
            +  N+   + D  +RF                 P         +         ++L GA
Sbjct: 277 -EHYNLPLILVDAADRF--------IGELEGETDPEKKRKTIGRLFIEVFEEEAKKLGGA 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +          +  +           +    ++    L  PL ++ K+
Sbjct: 328 DFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRELFKD 380

Query: 199 SVRDLAREMGLD 210
            VR L +E+GL 
Sbjct: 381 EVRLLGKELGLP 392


>gi|325688907|gb|EGD30915.1| argininosuccinate synthase [Streptococcus sanguinis SK115]
          Length = 399

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|324992542|gb|EGC24463.1| argininosuccinate synthase [Streptococcus sanguinis SK405]
 gi|324995929|gb|EGC27840.1| argininosuccinate synthase [Streptococcus sanguinis SK678]
 gi|327460766|gb|EGF07101.1| argininosuccinate synthase [Streptococcus sanguinis SK1]
 gi|327488849|gb|EGF20648.1| argininosuccinate synthase [Streptococcus sanguinis SK1058]
          Length = 399

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L +D YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLNKD-YDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|257469696|ref|ZP_05633788.1| PP-loop domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063928|ref|ZP_07928413.1| asparagine synthase [Fusobacterium ulcerans ATCC 49185]
 gi|313689604|gb|EFS26439.1| asparagine synthase [Fusobacterium ulcerans ATCC 49185]
          Length = 277

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 73/232 (31%), Gaps = 60/232 (25%)

Query: 23  VVVAMSGGVDSSVVAALLK-------RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           VVVA SGGVDSS    LLK       ++G  V  VT+             +     ++  
Sbjct: 23  VVVAFSGGVDSS---LLLKTACINAVKNGTKVFAVTMH-----------TTLHTMNEIES 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSV 132
           ++     +   H +    +  + A I              P   C  C + + F  +   
Sbjct: 69  SKETAGEVGAEHLIIS-VDELKEAGIEN-----------NPVERCYLCKKYL-FQKMKDK 115

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG  ++  G          DD    R   + +     +S    +             
Sbjct: 116 AESLGVKIILDG-------TNEDDLHMFRPGLKALKELEIKSPLAES------------- 155

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            D  K  VR LA E GL ++ K  +   C   +  Y   +         +G+
Sbjct: 156 -DFSKTDVRKLAEEYGLSVSKKPSTP--CLATRFPYGSRLSYEEMKKVEKGE 204


>gi|254477701|ref|ZP_05091087.1| GMP synthase [Ruegeria sp. R11]
 gi|214031944|gb|EEB72779.1| GMP synthase [Ruegeria sp. R11]
          Length = 552

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V     +     K +    A + V   R 
Sbjct: 254 DKKVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGLLRKNE----AEEVVTMFR- 305

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D  + F                 P       R +     + V ++   
Sbjct: 306 --DNYNIQLIHADESDLF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAD 351

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 352 TIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 404

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 405 ELFKDEVRALGRELGLPQS---------FIGRHPF------PGPGLAIRCPGEI 443


>gi|239994816|ref|ZP_04715340.1| GMP synthase [Alteromonas macleodii ATCC 27126]
          Length = 370

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G           
Sbjct: 75  VILGLSGGVDSSVTAMLLHRAIGDKLTCVFVDNGLLRLNEADQVMEMFG----------- 123

Query: 77  RRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSV 132
               D   ++    D EERF +    +  P     A G         N  V+ F +    
Sbjct: 124 ----DHFGLNIIRVDAEERFLDRLKGIEDPELKRKAIG---------NEFVRVFDE--EA 168

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++  A  LA G      +        +  + +           +    +     L  PL
Sbjct: 169 GKRENAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPEDMELGLVEPL 221

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 222 RELFKDEVRKIGLELGLP 239


>gi|223986315|ref|ZP_03636326.1| hypothetical protein HOLDEFILI_03636 [Holdemania filiformis DSM
           12042]
 gi|223961723|gb|EEF66224.1| hypothetical protein HOLDEFILI_03636 [Holdemania filiformis DSM
           12042]
          Length = 435

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V +  +   +  + +      ++  DA  
Sbjct: 140 DKKVLLALSGGVDSSVVAALLIKAIGKQLVCVHV-NHGLMRKGESESVIEVFRNQMDA-- 196

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
                  +    D  ERF            A  E     +     ++        R+L G
Sbjct: 197 -------NLIYVDASERFLTK-----LEGVADPEQKRKIIGA-EFIRV--FEEEARKLEG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G +   + +           +    +    +L  PL  + K
Sbjct: 242 IDFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLPEDMNFELVEPLYYLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGLELGLP 304


>gi|212634312|ref|YP_002310837.1| GMP synthase [Shewanella piezotolerans WP3]
 gi|226739733|sp|B8CKS4|GUAA_SHEPW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|212555796|gb|ACJ28250.1| GMP synthase [Shewanella piezotolerans WP3]
          Length = 525

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 71/207 (34%), Gaps = 43/207 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + +A++V     D   ++    D E RF +A          AGE      +  R +    
Sbjct: 267 LNEAQQVMDMFGDHFGLNIIHVDAENRFLDA---------MAGE---ADPESKRKIIGHV 314

Query: 129 LLSVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
            + +  +       A  LA G      +        +  + +           +      
Sbjct: 315 FVEIFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDD 367

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR +  E+GL 
Sbjct: 368 MELGLVEPLRELFKDEVRKIGLELGLP 394


>gi|329119897|ref|ZP_08248571.1| GMP synthase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464053|gb|EGF10364.1| GMP synthase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 521

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +     + +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRQNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E++F +           AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVRVIHVDAEKQFLDK---------LAGVT---DPERKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|168238182|ref|ZP_02663240.1| gmp synthase (glutamineamidotransferase) [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735323|ref|YP_002115573.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|226739723|sp|B4TR83|GUAA_SALSV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194710825|gb|ACF90046.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288913|gb|EDY28286.1| gmp synthase (glutamineamidotransferase) [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 525

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A LL    G ++  V +                    + +A +
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHCAIGKNLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F S+ A    P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAE---ERFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|289435441|ref|YP_003465313.1| hypothetical protein lse_2080 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171685|emb|CBH28231.1| argG [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 404

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY++I   L +   +     K                 
Sbjct: 5   KIVLAYSGGLDTSVAIQWLVEAGYEIIACCLDVGEGKNLDFIKEKAITVGASQS------ 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V R+ GA  
Sbjct: 59  ------YTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARKEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|167043840|gb|ABZ08529.1| putative PP-loop family protein [uncultured marine crenarchaeote
           HF4000_APKG3E18]
          Length = 268

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 47/205 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA+SGGVDS++VA               +L  S  A        A +++  A+++   
Sbjct: 19  VLVALSGGVDSALVAYS----------AYAKLGKSAIAVTADYKTLAQEELEYAKKISLE 68

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H V +Y E    + +               C  C   +    LL V ++   D++ 
Sbjct: 69  IGIKHIVIEYNELANESFVK---------NDNNRCFYCRSELS-EHLLQVAKEFETDMIV 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G        + D G  R  +                        +R PL +    K+ V
Sbjct: 119 DG------TNIDDLGDYRPGILALHQNG-----------------IRSPLAETGFSKKMV 155

Query: 201 RDLAREMGLDIADKSDSQDICFVQQ 225
           R  A+ +GL + DK  +   C   +
Sbjct: 156 RGTAKSVGLSVYDKPSN--SCLASR 178


>gi|218262621|ref|ZP_03477009.1| hypothetical protein PRABACTJOHN_02688 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223270|gb|EEC95920.1| hypothetical protein PRABACTJOHN_02688 [Parabacteroides johnsonii
           DSM 18315]
          Length = 435

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSSVVAALL +     IG      +               +  D   V
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLKA----IG------DKLVCVHVNHGLMRKGESEDVVEV 189

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQL- 136
                      +    +++ V   F    A    P     +     ++        R+L 
Sbjct: 190 FKN------QLNANLIYKD-VTDRFLDKLAGVADPEEKRKIIGGEFIRV--FEEEARKLD 240

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G        + + G +   M +           +    +    +L  PL  + 
Sbjct: 241 GIDFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFELVEPLRQLF 290

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+GL 
Sbjct: 291 KDEVRACGLELGLP 304


>gi|70732263|ref|YP_262019.1| GMP synthase [Pseudomonas fluorescens Pf-5]
 gi|91206820|sp|Q4K6W4|GUAA_PSEF5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68346562|gb|AAY94168.1| GMP synthase [Pseudomonas fluorescens Pf-5]
          Length = 525

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     + EE+F N +             G T    V    + K        
Sbjct: 278 ---AENMGVKVIRANAEEQFLNNLAGEADPEKKRKIIGRTF-IDVFDAESCKLE------ 327

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                  LA G      +        +  + +           +    ++    L  PL 
Sbjct: 328 ---NIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 378 ELFKDEVRRLGLELGLP 394


>gi|86750300|ref|YP_486796.1| GMP synthase [Rhodopseudomonas palustris HaA2]
 gi|123292405|sp|Q2IV75|GUAA_RHOP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|86573328|gb|ABD07885.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           HaA2]
          Length = 540

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 79/236 (33%), Gaps = 60/236 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V     +     K +           A+ V 
Sbjct: 244 KVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGMLRKDE-----------AKTVV 289

Query: 81  D----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           D      N+     D  E F  A          +G T     +  R +     + V    
Sbjct: 290 DLFRHHYNIPLVHVDASETFLGA---------LSGVT---DPEQKRKIIGKLFIDVFDAE 337

Query: 137 -----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                GAD LA G      +          +  +           +    ++    L  P
Sbjct: 338 AKVVGGADYLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEP 390

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           L ++ K+ VR L RE+GL         +I FV +  +         G+A+   G+I
Sbjct: 391 LRELFKDEVRALGRELGLP--------EI-FVGRHPF------PGPGLAIRCPGEI 431


>gi|294637669|ref|ZP_06715948.1| GMP synthase [Edwardsiella tarda ATCC 23685]
 gi|291089224|gb|EFE21785.1| GMP synthase [Edwardsiella tarda ATCC 23685]
          Length = 525

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +   D  V++ +SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 MREQIGDDEVILGLSGGVDSSVTALLLHRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
           + +A +V     D   ++    + E+RF  A   +  P A     G   +          
Sbjct: 267 LNEAEQVMAMFGDQFGLNIIHVNAEDRFLAALAGIADPEAKRKTIGRVFIEV-------- 318

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F +     +      LA G      +        +  + +           +    ++  
Sbjct: 319 FDE--EAAKLPQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEEMK 369

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 370 LGLVEPLKELFKDEVRKIGLELGLP 394


>gi|255320629|ref|ZP_05361806.1| gmp synthase [Acinetobacter radioresistens SK82]
 gi|262380738|ref|ZP_06073891.1| GMP synthase domain-containing protein [Acinetobacter
           radioresistens SH164]
 gi|255302245|gb|EET81485.1| gmp synthase [Acinetobacter radioresistens SK82]
 gi|262297686|gb|EEY85602.1| GMP synthase domain-containing protein [Acinetobacter
           radioresistens SH164]
          Length = 522

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   + +V++ +SGGVDSSVVAALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLREQIGNEKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +     + +       EERF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFAQNMGIRVIRAAAEERFLGA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLAFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|253689372|ref|YP_003018562.1| GMP synthase, large subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259647686|sp|C6DBG3|GUAA_PECCP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|251755950|gb|ACT14026.1| GMP synthase, large subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 525

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 NDQVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEADQVLEMFGDHFG---- 282

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
                    +N+ H   +            F    A    P       R +     +   
Sbjct: 283 ---------LNIVHVAAE----------DRFLGELAGENDPE----AKRKIIGRVFVEVF 319

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++Q     LA G      +        +  + +           +    ++    L
Sbjct: 320 DEEASKQTDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLKELFKDEVRKIGLELGLP 394


>gi|213023847|ref|ZP_03338294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 35

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384
           ++    V  GQ+ VFY+ +      LGGGII 
Sbjct: 1   DEPVAAVTPGQSAVFYSGEV----CLGGGIIE 28


>gi|300294862|gb|ADJ96638.1| GMP synthetase [Curtobacterium albidum]
          Length = 521

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 72/208 (34%), Gaps = 35/208 (16%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L    L +   D +V++ +SGGVDSSVV ALL +  G  +  V     ++      +G  
Sbjct: 213 LRVEQLRQQIGDEKVLLGLSGGVDSSVVRALLHKAIGDQLTCVF---VDNGLLRLNEGDQ 269

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                    +   + + +     D E+RF  A          AGE      +  R +   
Sbjct: 270 VM-------QMFAENMGIRVIRADAEQRFLTA---------LAGEV---DPEKKRKIIGR 310

Query: 126 --FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+L G   LA G      +      + +  + +           +     
Sbjct: 311 EFIEVFAEEARKLDGVKFLAQGTIYPDVIESAASKQGKAHVIKSHHN-------VGGLPD 363

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL D+ K+ VR L   +GL 
Sbjct: 364 DLEFELVEPLRDLFKDEVRKLGTTLGLP 391


>gi|90021107|ref|YP_526934.1| GMP synthase [Saccharophagus degradans 2-40]
 gi|89950707|gb|ABD80722.1| GMP synthase (glutamine-hydrolyzing) [Saccharophagus degradans
           2-40]
          Length = 542

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVVAALL +  G  +  V            RK       D++    
Sbjct: 244 DDKVLLGLSGGVDSSVVAALLHKAIGDKLTCVF-----VDNGLLRKNEGDQVMDMF---- 294

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
               + V     D  + F   +                 +  N  +          +L  
Sbjct: 295 -AKNMGVKVIRADAADLFLGNLAGESDPEKKRK------IIGNTFI--DIFDQEASKLKD 345

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    +    +L  PL ++ K
Sbjct: 346 VKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEDMQFELVEPLRELFK 398

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 399 DEVRKIGLELGLP 411


>gi|325697374|gb|EGD39260.1| argininosuccinate synthase [Streptococcus sanguinis SK160]
          Length = 399

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L    YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWL-DKDYDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|150006079|ref|YP_001300823.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254883447|ref|ZP_05256157.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641766|ref|ZP_07996447.1| GMP synthase 2 [Bacteroides sp. 3_1_40A]
 gi|149934503|gb|ABR41201.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254836240|gb|EET16549.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386600|gb|EFV67498.1| GMP synthase 2 [Bacteroides sp. 3_1_40A]
          Length = 435

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V          +         + V +  +
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH--------VNHGLMRKGESEAVIEVFK 191

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + +N +    D  +RF      V  P              +     ++        R+
Sbjct: 192 --NQLNANLIYVDATDRFLSKLENVADP---EQKRK------IIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGVELGLP 304


>gi|321263400|ref|XP_003196418.1| argininosuccinate synthase [Cryptococcus gattii WM276]
 gi|317462894|gb|ADV24631.1| argininosuccinate synthase, putative [Cryptococcus gattii WM276]
          Length = 429

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++A SGG+D+S +   L   GY+V+   +                  +D   AR 
Sbjct: 7   KKGKVILAYSGGLDTSCILLWLIEQGYEVVA-YMA------------DVGQEEDFEAARA 53

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                  V  ++ D +  F   +I P     A  E          R V    ++    + 
Sbjct: 54  KAMKCGAVGFHLADLKREFVEELIYPAVQCNAIYENVYLLGTSLARPVIARGMIEAAVKE 113

Query: 137 GADVLATG 144
           G D ++ G
Sbjct: 114 GCDYVSHG 121


>gi|70727581|ref|YP_254497.1| GMP synthase [Staphylococcus haemolyticus JCSC1435]
 gi|91206831|sp|Q4L386|GUAA_STAHJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68448307|dbj|BAE05891.1| GMP synthase [Staphylococcus haemolyticus JCSC1435]
          Length = 513

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + K   D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRKRVGDRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  +++    + +ERF + +                 V       F D   
Sbjct: 268 F-------GEGFDMNIIRVNAQERFMDKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +    D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 AAKLTDVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRALGIELGIP 382


>gi|220905738|ref|YP_002481049.1| GMP synthase [Cyanothece sp. PCC 7425]
 gi|219862349|gb|ACL42688.1| GMP synthase, large subunit [Cyanothece sp. PCC 7425]
          Length = 537

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL    Y  IG  L      +   RK        ++     
Sbjct: 233 DKRVLLALSGGVDSSTLAFLL----YRAIGNQLTCMFIDQGFMRKNEPERLVKLFR---- 284

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +  ++     +  ERF   +                    +  ++       +R+LG  
Sbjct: 285 -EQFHIPVEYVNASERFLERLEGVTDPEEKRKR------IGHEFIQV--FEEESRRLGPF 335

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D         R     +   + +    +     L  PL  + K+
Sbjct: 336 DYLAQGTLYPDVIESADTNVDPETGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFKD 394

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 395 EVRKVGRSLGLP 406


>gi|195118114|ref|XP_002003585.1| GI17996 [Drosophila mojavensis]
 gi|193914160|gb|EDW13027.1| GI17996 [Drosophila mojavensis]
          Length = 694

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL++  +   +I V +     RK           + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRKALHPNQIIAVHVDNGFMRKNESEN----VVRSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                I +   V      F      V  P    Y+  ETP+ C   N   K   +  +  
Sbjct: 282 -----IGIDLIVRKECYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC----- 186
           ++  DV+A    ++    +   G  R  +            ++          +      
Sbjct: 335 KVTNDVVAE-LKLKPEEVLLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNA 393

Query: 187 -DLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
             +  PL D  K+ VRDL  ++GL  A+  + Q
Sbjct: 394 GRVVEPLCDFHKDEVRDLGNDLGLP-AELVERQ 425


>gi|296119696|ref|ZP_06838254.1| argininosuccinate synthase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967579|gb|EFG80846.1| argininosuccinate synthase [Corynebacterium ammoniagenes DSM 20306]
          Length = 407

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 37/203 (18%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RVV+A SGG+D+SV    L K  G DV+ V+L L               G+D+   R+
Sbjct: 2   NARVVLAYSGGLDTSVAIPYLAKMTGGDVVAVSLDL------------GQGGEDMESVRQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D ++ F +   +P   +        P V   +R +    L+   ++ 
Sbjct: 50  RALDCGAVESIVIDAKDEFADEYCLPTIQANGMYMKQYPLVSAISRPLITKHLVQAAQEF 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
           G       H        G+D  R  +  R +D   D               +  P  D  
Sbjct: 110 G-----GTHVSHGCTGKGNDQVRFEVSFRALDPSLD---------------IIAPARDYA 149

Query: 196 -KKESVRDLAREMGLDIADKSDS 217
             ++     A E+ L I   + S
Sbjct: 150 WTRDKAIAFAEEIDLPIEQSASS 172


>gi|291298621|ref|YP_003509899.1| GMP synthase large subunit [Stackebrandtia nassauensis DSM 44728]
 gi|290567841|gb|ADD40806.1| GMP synthase, large subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 516

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDSSV AAL+ R  G  +  V            R G     +   D   
Sbjct: 216 DKRVLCGLSGGVDSSVAAALVHRAVGDQLTCVF-----VDHGLLRSGEAEQVE--KDYVA 268

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V     ++  V D +E F      V+ P +     G                   +  R+
Sbjct: 269 VT---GINLKVVDAQETFLKELSGVVDPESKRKIIGREF-----------IRAFENAARE 314

Query: 136 LGA----DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF- 190
           + A    + L  G      +  G  G       +           +     + L      
Sbjct: 315 IDAEGPIEYLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLP-EDLKFTLVE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +  E+GL 
Sbjct: 365 PLRTLFKDEVRAIGTELGLP 384


>gi|195034678|ref|XP_001988949.1| GH10300 [Drosophila grimshawi]
 gi|193904949|gb|EDW03816.1| GH10300 [Drosophila grimshawi]
          Length = 693

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 31/214 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDSSV AALL+R  +   +I V +     RK    +      + + D  
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALHPSQIIAVHVDNGFMRKNESEQ----VERSLRD-- 281

Query: 78  RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNR----------TV 124
                I +   V      F      V  P    Y+  ETP+ C   N            V
Sbjct: 282 -----IGIELIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLCQTYNPEEKRKIIGDIFV 334

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           K ++ +    +L  + +           +             +    + +  +       
Sbjct: 335 KVTNEVVAELKLKPEEVLLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNA- 393

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
              +  PL D  K+ VRDL  ++GL  A+  + Q
Sbjct: 394 -GRVVEPLSDFHKDEVRDLGNDLGLP-AELVERQ 425


>gi|313632417|gb|EFR99442.1| argininosuccinate synthase [Listeria seeligeri FSL N1-067]
 gi|313636935|gb|EFS02532.1| argininosuccinate synthase [Listeria seeligeri FSL S4-171]
          Length = 404

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GY++I   L +   +     K                 
Sbjct: 5   KIVLAYSGGLDTSVAIQWLAEAGYEIIACCLDVGEGKNLDFIKEKAITVGASQS------ 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V R+ GA  
Sbjct: 59  ------YTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARKEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|289548315|ref|YP_003473303.1| argininosuccinate synthase [Thermocrinis albus DSM 14484]
 gi|289181932|gb|ADC89176.1| argininosuccinate synthase [Thermocrinis albus DSM 14484]
          Length = 398

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A SGG+D+SV+   L   GY+VI  T    +  +  +        +D      +
Sbjct: 2   PKRVILAYSGGLDTSVIVRWLTERGYEVITYT---ADVGQGEELSEIPQKAKDSGAVEAI 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            +         D +E F     +P   + A  E   P     +R +  S L+   ++L A
Sbjct: 59  VE---------DLKEEFARNYCLPTLRALALYEGKYPLTASLSRPLIASKLVEYAQKLSA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 HYVAHG 115


>gi|226313665|ref|YP_002773559.1| NH(3)-dependent NAD(+) synthetase [Brevibacillus brevis NBRC
           100599]
 gi|226096613|dbj|BAH45055.1| NH(3)-dependent NAD(+) synthetase [Brevibacillus brevis NBRC
           100599]
          Length = 250

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 54/195 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS+V AAL  R  G + VIGV L             +        D++++ +
Sbjct: 39  VVGISGGIDSAVTAALCVRALGSERVIGVWL------------PAYSQTVHETDSKQLAE 86

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYA------AGETPLPCVDCNRTVKFSDLLSVTRQ 135
            I ++ +  D    +   V  P             G T          ++ + L ++  Q
Sbjct: 87  AIGMNLHTVDVGAAYDALV--PAIEGVLGLDDKTKGNTKA-------RLRMTVLYAIANQ 137

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G   L      RS ++VG        M +  D   D                  P+  +
Sbjct: 138 KG--YLVADTCNRSEIHVG-------YMTKGGDGLAD----------------FNPVASL 172

Query: 196 KKESVRDLAREMGLD 210
            K  +R LA E+G+ 
Sbjct: 173 TKHEMRILAAELGVP 187


>gi|297544225|ref|YP_003676527.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842000|gb|ADH60516.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 273

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 48/212 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+     L +  YDV+G      N   A        A  ++ +A  +   I
Sbjct: 19  LIAFSGGVDST----FLAKVSYDVLG------NRALAVTVTSPIHAKSELKEAVELAKKI 68

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            + H V ++ +             +     P   C  C   + FS   ++  + G   + 
Sbjct: 69  GIPHLVVEFNDILE-------IEEFRK--NPLNRCYICKFNL-FSGFKAIAEEKGFKYIL 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G    +   V D    RR +                    +L  +  PL    +KKE +
Sbjct: 119 EG---TNADDVSDFRPGRRALK-------------------ELG-ILSPLLECGIKKEEI 155

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           R L++EMGL   DK      C   +  Y + +
Sbjct: 156 RILSKEMGLPTWDKPSY--ACLASRIPYGEEI 185


>gi|212692102|ref|ZP_03300230.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855]
 gi|237724624|ref|ZP_04555105.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212665494|gb|EEB26066.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855]
 gi|229436819|gb|EEO46896.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 435

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V          +         + V +  +
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH--------VNHGLMRKGESEAVIEVFK 191

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + +N +    D  +RF      V  P              +     ++        R+
Sbjct: 192 --NQLNANLIYVDATDRFLSKLENVADP---EQKRK------IIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGVELGLP 304


>gi|154248919|ref|YP_001409744.1| GMP synthase [Fervidobacterium nodosum Rt17-B1]
 gi|154152855|gb|ABS60087.1| GMP synthase, large subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 522

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 26/194 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVVA LL +           + +               +  +  + 
Sbjct: 221 DGRVILGLSGGVDSSVVAMLLHKA----------VPDKFIPIFVDTGLLRKNECIEVVKQ 270

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            + I +  +  D  E+F    + V  P       G T                     +L
Sbjct: 271 FEEIGIHIHYVDASEKFLEVLDGVEDPEEKRKRIGHTF-----------IDVFYEEAMKL 319

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                   +  +  LY      +         ++   +  +    ++   ++  PL  + 
Sbjct: 320 KEKYGDIKYLAQGTLYPDIIESKVAERKAGAKIKTHHN--VGGLPEKLPFEIIEPLRYLF 377

Query: 197 KESVRDLAREMGLD 210
           K+ VR L +E+GL 
Sbjct: 378 KDEVRMLGQEIGLP 391


>gi|319787017|ref|YP_004146492.1| GMP synthase, large subunit [Pseudoxanthomonas suwonensis 11-1]
 gi|317465529|gb|ADV27261.1| GMP synthase, large subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 522

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 63/197 (31%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 227 VILGLSGGVDSSVVAALLHKAIGDQLTCVF---------VDTGLLRWQEGDQVMATF-AE 276

Query: 82  TINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----T 133
            + V     D  +R+      V  P               +  R +  +  + +      
Sbjct: 277 HLGVKVIRVDAADRYFKALEGVSEP---------------EAKRKIIGNLFVDIFEEESA 321

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R   A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 322 RLKNARWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 374

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 375 ELFKDEVRRLGVELGLP 391


>gi|229592427|ref|YP_002874546.1| GMP synthase [Pseudomonas fluorescens SBW25]
 gi|259647687|sp|C3K1K0|GUAA_PSEFS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|229364293|emb|CAY52028.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas fluorescens
           SBW25]
          Length = 525

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQVMAMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
               + + V     + E++F N           AGE+     +  R +     + V   +
Sbjct: 278 ---AENMGVKVIRANAEDQFLNN---------LAGES---DPEKKRKIIGRTFIDVFDAQ 322

Query: 135 QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               D    LA G      +        +  + +           +    ++    L  P
Sbjct: 323 SNKLDNIKYLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 376 LRELFKDEVRRLGLELGLP 394


>gi|150399411|ref|YP_001323178.1| NAD+ synthetase [Methanococcus vannielii SB]
 gi|150012114|gb|ABR54566.1| NAD+ synthetase [Methanococcus vannielii SB]
          Length = 258

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 48/186 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARRV 79
           VV +SGG+DSS+VA LL R  G + V G+ +  +  N +                  + V
Sbjct: 32  VVGLSGGIDSSLVAYLLVRALGKENVFGLIMPEKNSNPKDEKHG-------------KLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLG 137
            + + +++ +FD         +   A  Y  G+      D N    ++ + L        
Sbjct: 79  AEKLGINYSIFDITPVL----VAFDAGGYVLGKEFDKRSDGNLKPRIRMTKLYYEA---- 130

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                                ++  +       + + Y  + T    L      LG++ K
Sbjct: 131 --------------------NKKNYLVSGT-SNKSEIYMGYGTKHGDLGCDFLTLGNLFK 169

Query: 198 ESVRDL 203
             VR L
Sbjct: 170 TEVRQL 175


>gi|167628194|ref|YP_001678693.1| gmp synthase (glutamine-hydrolyzing) [Heliobacterium modesticaldum
           Ice1]
 gi|226739629|sp|B0TI09|GUAA_HELMI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167590934|gb|ABZ82682.1| gmp synthase (glutamine-hydrolyzing) [Heliobacterium modesticaldum
           Ice1]
          Length = 513

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 40/196 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGSCCAGQDVYD 75
           +V+ A+SGGVDSSV A L+ R  G  +  V      ++L  S +  K             
Sbjct: 219 KVLCALSGGVDSSVAALLVHRAVGEQLTCVYVDHGFMRLNESERIIKTFR---------- 268

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                D + ++    +  ERF   V                    N  ++         +
Sbjct: 269 -----DELGMNLIAVEASERFMAKVAGVSDPETKRK------SIGNEFIRV--FEEEAAK 315

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  D L  G      +  G                      +    +    +L  PL  
Sbjct: 316 LGQVDFLVQGTLYPDVVESGTSTAETIKTHHN----------VGGLPEDMKFELIEPLRT 365

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++ + +GL 
Sbjct: 366 LFKDEVREVGQRLGLP 381


>gi|149007912|ref|ZP_01831490.1| argininosuccinate synthase [Streptococcus pneumoniae SP18-BS74]
 gi|149026542|ref|ZP_01836599.1| argininosuccinate synthase [Streptococcus pneumoniae SP23-BS72]
 gi|168483583|ref|ZP_02708535.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae CDC1873-00]
 gi|307126334|ref|YP_003878365.1| argininosuccinate synthase [Streptococcus pneumoniae 670-6B]
 gi|147760535|gb|EDK67510.1| argininosuccinate synthase [Streptococcus pneumoniae SP18-BS74]
 gi|147929229|gb|EDK80232.1| argininosuccinate synthase [Streptococcus pneumoniae SP23-BS72]
 gi|172042913|gb|EDT50959.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Streptococcus pneumoniae CDC1873-00]
 gi|306483396|gb|ADM90265.1| argininosuccinate synthase [Streptococcus pneumoniae 670-6B]
          Length = 139

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    LK+D YDV+ V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV----------GEGKDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D ++ F    ++    S+A  E   P V   +R +    L+ +  Q+GA 
Sbjct: 54  A---VESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|266620688|ref|ZP_06113623.1| GMP synthase protein [Clostridium hathewayi DSM 13479]
 gi|288867681|gb|EFC99979.1| GMP synthase protein [Clostridium hathewayi DSM 13479]
          Length = 435

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +  V          +         + V D  +
Sbjct: 140 DKKVLLALSGGVDSSVVAALLIKAIGKQLTCVH--------VNHGLMRKGESESVIDVFK 191

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
               ++ +    D  ERF   +                 +     ++        R+L G
Sbjct: 192 --HQLDANLVYVDATERFLGKLAGVADPEQKRK------IIGAEFIRV--FEEEARKLEG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + LA G        + + G +   M +           +    +     L  PL  + K
Sbjct: 242 IEFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFQLVEPLRQLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGVELGLP 304


>gi|54294610|ref|YP_127025.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Legionella pneumophila str. Lens]
 gi|81368495|sp|Q5WVX4|GUAA_LEGPL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|53754442|emb|CAH15926.1| hypothetical protein lpl1686 [Legionella pneumophila str. Lens]
          Length = 525

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL R  G  ++ V      L+L  + +     G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHRAIGEQLVCVFVDTGLLRLNEAEQVLSMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSV 132
                  + +     + E++F  A+             G T +                 
Sbjct: 278 -----RHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEV-----------FDEE 321

Query: 133 TRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++L     LA G  Y               ++ +           +          L  
Sbjct: 322 AQKLTDIKWLAQGTIYPDVIESAATSTNDAAVVIKSHHN-------VGGLPDTLNLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+ ++ K+ VR +  E+GL 
Sbjct: 375 PIRELFKDEVRQVGLELGLP 394


>gi|89094123|ref|ZP_01167066.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanospirillum sp. MED92]
 gi|89081598|gb|EAR60827.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanospirillum sp. MED92]
          Length = 526

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSVVAALL +  G  +  V            RK       D++    
Sbjct: 228 NQKVLLGLSGGVDSSVVAALLHKAIGDQLTCVF-----VDNGLLRKQEGDQVMDMF---- 278

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
               + V     D E+ F                 P     +  N  +          +L
Sbjct: 279 -AKNMGVRVIRADAEDLF--------LGRLEGENDPEKKRKIIGNTFI--EVFDDEATKL 327

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              + LA G      +        +  + +           +    +    +L  PL ++
Sbjct: 328 SDVNFLAQGTIYPDVIESAAAKTGKAHVIKSHHN-------VGGLPEDMQFELVEPLREL 380

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 381 FKDEVRKLGLELGLP 395


>gi|90407904|ref|ZP_01216079.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychromonas sp. CNPT3]
 gi|90310995|gb|EAS39105.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychromonas sp. CNPT3]
          Length = 526

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + +   D  V++ +SGGVDSSVVA LL+R  G  +  V      L+L    +  +     
Sbjct: 222 MKEQIGDDEVILGLSGGVDSSVVAMLLQRAIGDRLTCVFVDNGLLRLDEGDQVMEMF--- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                            +     + E+RF N           AGE+     +  R +   
Sbjct: 279 ------------AGRFGLKIIRVNAEDRFLNE---------MAGES---DPEKKRKIIGR 314

Query: 128 DLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 315 VFVEIFDEESKKLENAKWLAQGTIYPDVIESAATKNGKAHVIKSHHN-------VGGLPD 367

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 368 DMEMGLVEPLRELFKDEVRKIGLELGLP 395


>gi|85374397|ref|YP_458459.1| argininosuccinate synthase [Erythrobacter litoralis HTCC2594]
 gi|122544222|sp|Q2N9H9|ASSY_ERYLH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|84787480|gb|ABC63662.1| argininosuccinate synthase [Erythrobacter litoralis HTCC2594]
          Length = 404

 Score = 62.1 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 18/132 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           P   RVV+A SGG+D+SV+A  L    G +V+  T                  G+++  A
Sbjct: 2   PDIKRVVLAYSGGLDTSVIAKWLEVERGLEVVTFT-------------ADLGQGEELEPA 48

Query: 77  RRVCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSV 132
           R     + +     ++ D  E F    + P   + A  E          R +    L+ +
Sbjct: 49  RAKAQAMGIPDKHIFIEDLREEFVRDYVFPMMRANARYEGDYLLGTSIARPLISKRLVEI 108

Query: 133 TRQLGADVLATG 144
            ++ GAD +A G
Sbjct: 109 AQETGADAIAHG 120


>gi|296282649|ref|ZP_06860647.1| argininosuccinate synthase [Citromicrobium bathyomarinum JL354]
          Length = 412

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RVV+A SGG+D+SV+A  L    G +V+  T                  G+++  ARR
Sbjct: 8   NNRVVLAYSGGLDTSVIAKWLEVERGLEVVTFT-------------ADLGQGEELEPARR 54

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
               + +     ++ D  E F    + P   + A  E          R +    L+ + R
Sbjct: 55  KAQAMGIPDKHIFIEDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLVEIAR 114

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 115 ETGAGAIAHG 124


>gi|227112674|ref|ZP_03826330.1| GMP synthase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 NDHVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEADQVLEMFGDHFG---- 282

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
                    +N+ H   +            F    A  + P       R +     +   
Sbjct: 283 ---------LNIVHVAAE----------DRFLGELAGEDEPE----AKRKIIGRVFVEVF 319

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++Q     LA G      +        +  + +           +    ++    L
Sbjct: 320 DEEASKQTDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLKELFKDEVRKIGLELGLP 394


>gi|20094378|ref|NP_614225.1| argininosuccinate synthase [Methanopyrus kandleri AV19]
 gi|24211501|sp|Q8TWU0|ASSY_METKA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|19887449|gb|AAM02155.1| Argininosuccinate synthase [Methanopyrus kandleri AV19]
          Length = 394

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 75/203 (36%), Gaps = 41/203 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RVV+A SGG+D+SV   LL+   GYD VI VT        A   +      +    AR++
Sbjct: 3   RVVLAYSGGLDTSVCIELLRERYGYDEVITVT--------ADVGQPEEELREAEEKARKL 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGET--PLPCVDC-NRTVKFSDLLSVTRQL 136
            D     H+  D  + F   V      +  A  T    P      R +    +L V R +
Sbjct: 55  AD----EHFTVDCVDEF---VCEYCWRAVKANATYEGYPLSTALARPLIAQKVLEVARDV 107

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
            AD +A G                    +  D  R +SY      ++    +  P+ D  
Sbjct: 108 DADAVAHG-----------------CTGKGNDQFRFESYLRAHGGEEFE--IVAPVRDLN 148

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
           + ++     A E G+ +    DS
Sbjct: 149 LTRDEEIAYAEERGIPVPVDVDS 171


>gi|294775258|ref|ZP_06740781.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|294450835|gb|EFG19312.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
          Length = 435

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V          +         + V +  +
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH--------VNHGLMRKGESEAVIEVFK 191

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + +N +    D  +RF      V  P              +     ++        R+
Sbjct: 192 --NQLNANLIYVDATDRFLSKLENVTDP---EQKRK------IIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGVELGLP 304


>gi|57640895|ref|YP_183373.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159219|dbj|BAD85149.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
           KOD1]
          Length = 272

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 23/134 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++  SGG DSS+   +LK  G DV  +T                   + +  A R 
Sbjct: 20  EKRVLMLFSGGKDSSLALYILKEAGLDVSALTF-----------FHRWSWRETLNWAMRF 68

Query: 80  CDTINVSHYVFDYEE-RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
              ++V HY+ D  E   R AV          G     C++C + + ++         G 
Sbjct: 69  TKKLSVEHYLVDITEGLLREAV----------GRKGPVCINCKKVMLWNAKW-FALNSGF 117

Query: 139 DVLATGHYIRSRLY 152
           DVLA G     ++ 
Sbjct: 118 DVLAKGDNANDKII 131


>gi|239625091|ref|ZP_04668122.1| asparagine synthase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519321|gb|EEQ59187.1| asparagine synthase [Clostridiales bacterium 1_7_47FAA]
          Length = 273

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 67/199 (33%), Gaps = 50/199 (25%)

Query: 23  VVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +A SGGVDSS    V A      G  V  VT         S+   SC    D+  ARR
Sbjct: 21  ICLAFSGGVDSSLLLKVAADAAVETGKKVYAVTF-------DSRLHPSC----DLEIARR 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +   H V + +E  +  +                C  C R + F  L  +  + G 
Sbjct: 70  VAGELGGIHQVIEVDELEQEEI---------RMNPVNRCYLCKRHL-FMSLKKLAGEYGV 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG--DMK 196
             +  G          D    R  +    +L                  +  PL    + 
Sbjct: 120 SRILDG------TNEDDMHVYRPGIQALKELG-----------------IISPLAELHIT 156

Query: 197 KESVRDLAREMGLDIADKS 215
           K++V+ +A E G+ +A + 
Sbjct: 157 KDAVKQMAAEYGISVASRP 175


>gi|125718926|ref|YP_001036059.1| argininosuccinate synthase [Streptococcus sanguinis SK36]
 gi|166221025|sp|A3CQQ4|ASSY_STRSV RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|125498843|gb|ABN45509.1| Argininosuccinate synthase, putative [Streptococcus sanguinis SK36]
          Length = 399

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +V++A SGG+D+SV    L    YDVI V + +          G       ++D A +V 
Sbjct: 5   KVILAYSGGLDTSVAITWL-DKDYDVIAVCMDV----------GEGNDLDFIHDKALKVG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  +V D ++ F    ++     +   E   P V   +R +    L+ +  + GA 
Sbjct: 54  A---IESHVIDVKDEFAEDYVLVALQGHTFYERKYPLVSALSRPLISKKLVEIAHKTGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 TIAHG 115


>gi|284052412|ref|ZP_06382622.1| GMP synthase [Arthrospira platensis str. Paraca]
 gi|291570501|dbj|BAI92773.1| GMP synthase (glutamine-hydrolyzing) [Arthrospira platensis
           NIES-39]
          Length = 541

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RK        ++D    
Sbjct: 237 DKRVLLALSGGVDSSTLAFLLHQA----IGDQLTCMFIDQGFMRKYEPEKLVKLFD---- 288

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            D  ++S    +  +RF   +                       ++       + +LG  
Sbjct: 289 -DRFHISVEYVNARDRFLEQLKGVTDPEEKRKR------IGGEFIRV--FEEESARLGPF 339

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +   + +    +     L  PL  + K+
Sbjct: 340 DYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFKD 398

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 399 EVRKVGRSIGLP 410


>gi|237709041|ref|ZP_04539522.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265755532|ref|ZP_06090153.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229457103|gb|EEO62824.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234138|gb|EEZ19731.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 435

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V          +         + V +  +
Sbjct: 140 DKKVLLALSGGVDSSVVAALLLKAIGNNLVCVH--------VNHGLMRKGESEAVIEVFK 191

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + +N +    D  +RF      V  P              +     ++        R+
Sbjct: 192 --NQLNANLIYVDATDRFLSKLENVADP---EQKRK------IIGGEFIRV--FEEEARK 238

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 239 LNGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLRQ 288

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 289 LFKDEVRACGVELGLP 304


>gi|291539354|emb|CBL12465.1| conserved hypothetical protein TIGR00268 [Roseburia intestinalis
           XB6B4]
          Length = 274

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 53/239 (22%)

Query: 23  VVVAMSGGVDSS--VVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARR 78
           V VA S GVDS+  + AA  K  G D VI VT              SC   + ++ +A++
Sbjct: 21  VAVAFSSGVDSTFLLAAAK-KTLGADHVIAVT------------ASSCSFPKRELEEAKQ 67

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    + H V   EE      I  F            C  C   + F  +L + ++   
Sbjct: 68  FCKEQGIRHIVCKSEELD----IEGF-----RQNPKNRCYLCKHEL-FEKILEIAKEYHI 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A G        + D+G  R  +    +L            +  L +       + KE
Sbjct: 118 NAVAEG------SNMDDNGDYRPGLVAVAELG----------IKSPLREAL-----LNKE 156

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +R L++EMGL   DK      C   +  Y + +     G+  + + + L+   +G H 
Sbjct: 157 EIRTLSKEMGLPTWDKQSF--ACLSSRFVYGETISEEKLGMVDKAEQLLLD---MGFHQ 210


>gi|238921023|ref|YP_002934538.1| GMP synthase [Edwardsiella ictaluri 93-146]
 gi|259647680|sp|C5BER5|GUAA_EDWI9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|238870592|gb|ACR70303.1| GMP synthase [Edwardsiella ictaluri 93-146]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + +   D  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +     G  
Sbjct: 221 MREQIGDDEVILGLSGGVDSSVTALLLHRAIGKRLTCVFVDNGLLRLNEAEQVMDMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTV 124
                        D   ++    + E RF +A   +  P A     G   +         
Sbjct: 279 -------------DRFGLNIIHVNAEARFLSALSGIADPEAKRKTIGRVFVEV------- 318

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            F +     +      LA G      +        +  + +           +    ++ 
Sbjct: 319 -FDE--EAAKLPQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEEM 368

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 369 KLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|240145427|ref|ZP_04744028.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257202556|gb|EEV00841.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 274

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 53/239 (22%)

Query: 23  VVVAMSGGVDSS--VVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARR 78
           V VA S GVDS+  + AA  K  G D VI VT              SC   + ++ +A++
Sbjct: 21  VAVAFSSGVDSTFLLAAAK-KTLGADHVIAVT------------ASSCSFPKRELEEAKQ 67

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    + H V   EE      I  F            C  C   + F  +L + ++   
Sbjct: 68  FCKEQGIRHIVCKSEELD----IEGF-----RQNPKNRCYLCKHEL-FEKILEIAKEYHI 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A G        + D+G  R  +    +L            +  L +       + KE
Sbjct: 118 NAVAEG------SNMDDNGDYRPGLVAVAELG----------IKSPLREAL-----LNKE 156

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
            +R L++EMGL   DK      C   +  Y + +     G+  + + + L+   +G H 
Sbjct: 157 EIRTLSKEMGLPTWDKQSF--ACLSSRFVYGETISEEKLGMVDKAEQLLLD---MGFHQ 210


>gi|189424960|ref|YP_001952137.1| GMP synthase [Geobacter lovleyi SZ]
 gi|189421219|gb|ACD95617.1| GMP synthase, large subunit [Geobacter lovleyi SZ]
          Length = 517

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVA LL +     IG  LQ         RKG          A +V
Sbjct: 220 NGKVICALSGGVDSSVVAVLLHKA----IGDQLQCIFVNNGLLRKGE---------AEKV 266

Query: 80  CD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +       ++    +   RF + +                 +  N  +         ++
Sbjct: 267 VNLFTRHFKINLDYVEASSRFLDKLKGITDPEQKRK------IIGNEFI--YLFEDEAKK 318

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +G  D LA G  +   +      K    + +           +     +    L  P+ +
Sbjct: 319 IGTVDWLAQG-TLYPDVIESVSTKGPSAVIKSHHN-------VGGLPDRMKMKLIEPVRE 370

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+GL 
Sbjct: 371 LFKDEVRLLGKELGLP 386


>gi|89068296|ref|ZP_01155706.1| GMP synthase (glutamine-hydrolyzing) [Oceanicola granulosus
           HTCC2516]
 gi|89046213|gb|EAR52271.1| GMP synthase (glutamine-hydrolyzing) [Oceanicola granulosus
           HTCC2516]
          Length = 519

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 74/235 (31%), Gaps = 54/235 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDA 76
           D RV+  +SGGVDSSV A L+    G  +  V +   L    +A +  G         DA
Sbjct: 221 DARVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLLRQNEAEEVVG------MFRDA 274

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  N+     D  + F      V  P       G                      
Sbjct: 275 ------YNIPLIHADEADLFLGELEGVSDPEVKRKTIGRLF-----------IDVFQREA 317

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++ GA  LA G      +          +  +           +    ++    L  PL
Sbjct: 318 NKIEGASFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPL 370

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 371 RELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|291531576|emb|CBK97161.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium siraeum 70/3]
          Length = 241

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 48/148 (32%), Gaps = 44/148 (29%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA------LLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           D D   K  R+ V +SGG DS V+ A            YD+  VT+            G 
Sbjct: 14  DFDLIQKGDRIAVGVSGGKDSLVLLAGLAQMRRFAEFDYDITAVTI----------DPGF 63

Query: 67  CCAGQDVYDARRVCDTINVSH---------YVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                +     R+C+ ++V            VFD  +                   P PC
Sbjct: 64  NGVPNNYEAVARLCEKLDVPFSLVHTQIGEIVFDIRKE------------------PNPC 105

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGH 145
             C   ++   L    +  G + LA GH
Sbjct: 106 SLC-ANMRRGALHDAAKAAGCNKLALGH 132


>gi|298490690|ref|YP_003720867.1| GMP synthase large subunit ['Nostoc azollae' 0708]
 gi|298232608|gb|ADI63744.1| GMP synthase, large subunit ['Nostoc azollae' 0708]
          Length = 540

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++A+SGGVDSS +A LL K  G  +  V +      +   RK        ++    
Sbjct: 236 EKRVLLALSGGVDSSTLAFLLYKAIGEQLTCVFI-----DQGFMRKLEPERLLKLFQ--- 287

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             +  ++     +  +RF  A+                    +  ++       +++LG 
Sbjct: 288 --EQFHIPVEYVNARDRFIKAIADIIDPEEKRRR------IGHEFIRV--FEETSKKLGH 337

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +   D     +   R     +   + +    +     L  PL  + K
Sbjct: 338 FDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFK 396

Query: 198 ESVRDLAREMGLD 210
           + VR + R +GL 
Sbjct: 397 DEVRKVGRSIGLP 409


>gi|153951972|ref|YP_001398910.1| hypothetical protein JJD26997_1992 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939418|gb|ABS44159.1| thiamine biosynthesis protein:ExsB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 349

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 91/264 (34%), Gaps = 53/264 (20%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K    M+ +   SGG+DS +   L+   G +V  + + +          GS     ++  
Sbjct: 18  KKGTQMKALALFSGGLDSMLAMKLITTQGIEVKALNINI--------GFGSTSDKSEIM- 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            ++    +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++
Sbjct: 69  -KKRAAMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKE 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  + TG  +  R        R   M +   L  D+         + +C    PL   
Sbjct: 125 ENASFIITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL--- 173

Query: 196 KKESVR---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
            K   R                     +LA + GL+  +       C +         K+
Sbjct: 174 TKPE-REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLT---LDSFAKK 227

Query: 235 INAGIALEGDIVHLNGQIL--GRH 256
           I   I  + D+   + Q+L  GRH
Sbjct: 228 IRDFIEFDKDMQVNDAQLLKYGRH 251


>gi|83590931|ref|YP_430940.1| GMP synthase [Moorella thermoacetica ATCC 39073]
 gi|91206810|sp|Q2RGP2|GUAA_MOOTA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83573845|gb|ABC20397.1| GMP synthase (glutamine-hydrolyzing) [Moorella thermoacetica ATCC
           39073]
          Length = 516

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV+ A+SGGVDSSV AAL+ R  G  +  V          +         + V   R 
Sbjct: 221 NGRVLCALSGGVDSSVAAALVHRAVGDRLTCVF--------VNHGLLRQGEAEQVQ--RA 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
               + ++    D   RF   +                 +  +  ++        R+LG 
Sbjct: 271 FGQAMGMNIVYVDASRRFLEKLTGVTDPEEKRK------IIGHEFIRV--FEEEARKLGR 322

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G     + +           +    +    +L  PL  + K
Sbjct: 323 VDFLVQG---TLYPDVIESGTETAAVIKSHHN-------VGGLPEDMELELIEPLRLLFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 373 DEVRRVGEELGLP 385


>gi|150401225|ref|YP_001324991.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           aeolicus Nankai-3]
 gi|150013928|gb|ABR56379.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           aeolicus Nankai-3]
          Length = 406

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 38/205 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +S G+DSSV +  + + G + + + ++L +     K K  C    D       
Sbjct: 199 QGKVLVLLSDGIDSSVASYYIIKRGCNAVFLHMKL-SEEGLEKTKKLCGVLNDYD----- 252

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGA 138
           C++      V DY+E  +N ++               CV C +T+ K ++     ++   
Sbjct: 253 CNS---ELIVVDYKEELKN-IVSNLK---KINREKYACVFCKKTMLKIAE--KYAKENNC 303

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +  G  +                       ++    L   ++     +  PL    K+
Sbjct: 304 HAIVNGDNLGQV---------------ASQTLKN----LAVISEGVELPILRPLIGFDKQ 344

Query: 199 SVRDLAREMGLDIADKSDSQDI-CF 222
            + + A+E+G    + S S++I CF
Sbjct: 345 EIINKAKEIG--TYEISISKEIKCF 367


>gi|157961142|ref|YP_001501176.1| GMP synthase [Shewanella pealeana ATCC 700345]
 gi|226739731|sp|A8H254|GUAA_SHEPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157846142|gb|ABV86641.1| GMP synthase, large subunit [Shewanella pealeana ATCC 700345]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 33/202 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKEQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + +A++V     D   ++    D E RF +          A      P  +  R +    
Sbjct: 267 LNEAQQVMDMFGDHFGLNIVHVDAENRFLD----------AMAGEAEP--EAKRKIIGRV 314

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + +  +     +      +  +Y            +   ++   +  +          L
Sbjct: 315 FVEIFDEESKKCVNAKWLAQGTIYPDVIESAGSATGKAHCIKSHHN--VGGLPDDMAMGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLRELFKDEVRKIGLELGLP 394


>gi|319891351|ref|YP_004148226.1| GMP synthase, glutamine-hydrolyzing [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161047|gb|ADV04590.1| GMP synthase, glutamine-hydrolyzing [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465495|gb|ADX77648.1| GMP synthase [Staphylococcus pseudintermedius ED99]
          Length = 513

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  N++    + ++RF + +                 V       F D    ++  G
Sbjct: 269 --AEGFNMNIIRVNAKDRFMSKLKGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|269140129|ref|YP_003296830.1| GMP synthase, large subunit [Edwardsiella tarda EIB202]
 gi|267985790|gb|ACY85619.1| GMP synthase, large subunit [Edwardsiella tarda EIB202]
 gi|304559963|gb|ADM42627.1| GMP synthase (glutamine-hydrolyzing) [Edwardsiella tarda FL6-60]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 43/207 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + +   D  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +     G  
Sbjct: 221 MREQIGDDEVILGLSGGVDSSVTALLLHRAIGKRLTCVFVDNGLLRLNEAEQVMDMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTV 124
                        D   ++    + E RF +A   +  P       G   +         
Sbjct: 279 -------------DRFGLNIIHVNAEARFLSALSGIADPEVKRKTIGRVFVEV------- 318

Query: 125 KFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
                     +L     LA G      +        +  + +           +    ++
Sbjct: 319 ----FDEEATKLPQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKE 367

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR +  E+GL 
Sbjct: 368 MKLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|206900932|ref|YP_002250055.1| NH(3)-dependent NAD(+) synthetase [Dictyoglomus thermophilum
           H-6-12]
 gi|206740035|gb|ACI19093.1| NH(3)-dependent NAD(+) synthetase [Dictyoglomus thermophilum
           H-6-12]
          Length = 540

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 22/103 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + +VA+SGG+DSSV A L     G + V+G+ +                + +   DA  
Sbjct: 285 KKALVALSGGIDSSVTACLAVAALGKENVLGIYM-----------PSRYSSKESAIDAEM 333

Query: 79  VCDTINVSHYVFDYEERFR---------NAVIVPFASSYAAGE 112
           +   + + + V   E+ F          N V +  A       
Sbjct: 334 LAKNLGIEYRVIPIEKIFSSFIETLNPNNRVFMDNAEENLQAR 376


>gi|254521475|ref|ZP_05133530.1| argininosuccinate synthase [Stenotrophomonas sp. SKA14]
 gi|219719066|gb|EED37591.1| argininosuccinate synthase [Stenotrophomonas sp. SKA14]
          Length = 403

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 73/215 (33%), Gaps = 40/215 (18%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +D  P  +  VV+A SGG+D+S     L+  GY+V  V          +   G     +D
Sbjct: 1   MDLTPMSNKDVVLAFSGGLDTSFCVPYLQERGYNVHTVF---------ADTGGVDDEERD 51

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             + R     + V SH   +         + PF  +    +   P +  +R +     L 
Sbjct: 52  FIEKRAAA--LGVTSHVTVNGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALK 109

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              +LG +++A G                   C  M    DQ  F  A        +  P
Sbjct: 110 RAAELGTNIIAHG-------------------CTGM--GNDQVRFDLAVKALGDYQIIAP 148

Query: 192 LGDMKKE--SVR----DLAREMGLDIADKSDSQDI 220
           + +++KE    R        E G  +  K  +  I
Sbjct: 149 IREIQKEHTQTRAYEQKYLEERGFGVRAKQQAYTI 183


>gi|192290882|ref|YP_001991487.1| GMP synthase [Rhodopseudomonas palustris TIE-1]
 gi|192284631|gb|ACF01012.1| GMP synthase, large subunit [Rhodopseudomonas palustris TIE-1]
          Length = 565

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V     +     K +G     + V D  R  
Sbjct: 269 KVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGLLRKDEG-----KSVVDLFR-- 318

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLSVTRQL-G 137
              N+     D  E F  A           G T  P        K       +  R++ G
Sbjct: 319 HHYNIPLVHVDVSETFLGA---------LKGVTD-PEQKRKTIGKLFIDVFEAEARRVGG 368

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 369 ADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELFK 421

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 422 DEVRALGRELGLP 434


>gi|58266460|ref|XP_570386.1| argininosuccinate synthase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57226619|gb|AAW43079.1| argininosuccinate synthase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 429

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++A SGG+D+S +   L   GY+V+   +                  +D   AR 
Sbjct: 7   KKGKVILAYSGGLDTSCILLWLIEQGYEVVA-YMA------------DVGQEEDFEAARA 53

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                  V  ++ D +  F   +I P     A  E          R V    ++    + 
Sbjct: 54  KAMQCGAVGFHLADLKREFVEELIYPAVQCNAIYENVYLLGTSLARPVIARGMIEAAVKE 113

Query: 137 GADVLATG 144
           G D ++ G
Sbjct: 114 GCDFVSHG 121


>gi|329964694|ref|ZP_08301748.1| putative argininosuccinate synthase [Bacteroides fluxus YIT 12057]
 gi|328525094|gb|EGF52146.1| putative argininosuccinate synthase [Bacteroides fluxus YIT 12057]
          Length = 403

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNE 51

Query: 78  RVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +    YV  D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAKEYVTIDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 111 EIGADAIAHG 120


>gi|39935272|ref|NP_947548.1| GMP synthase [Rhodopseudomonas palustris CGA009]
 gi|44887926|sp|P60501|GUAA_RHOPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|39649124|emb|CAE27644.1| GMP synthetase [Rhodopseudomonas palustris CGA009]
          Length = 540

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V     +     K +G     + V D  R  
Sbjct: 244 KVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGLLRKDEG-----KSVVDLFR-- 293

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLSVTRQL-G 137
              N+     D  E F  A           G T  P        K       +  R++ G
Sbjct: 294 HHYNIPLVHVDVSETFLGA---------LKGVTD-PEQKRKTIGKLFIDVFEAEARRVGG 343

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 344 ADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELFK 396

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 397 DEVRALGRELGLP 409


>gi|134111374|ref|XP_775603.1| hypothetical protein CNBD5570 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258265|gb|EAL20956.1| hypothetical protein CNBD5570 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 429

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++A SGG+D+S +   L   GY+V+   +                  +D   AR 
Sbjct: 7   KKGKVILAYSGGLDTSCILLWLIEQGYEVVA-YMA------------DVGQEEDFEAARA 53

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                  V  ++ D +  F   +I P     A  E          R V    ++    + 
Sbjct: 54  KAMQCGAVGFHLADLKREFVEELIYPAVQCNAIYENVYLLGTSLARPVIARGMIEAAVKE 113

Query: 137 GADVLATG 144
           G D ++ G
Sbjct: 114 GCDFVSHG 121


>gi|34557924|ref|NP_907739.1| GMP synthase [Wolinella succinogenes DSM 1740]
 gi|44887990|sp|Q7M8K2|GUAA_WOLSU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34483642|emb|CAE10639.1| GMP SYNTHASE [Wolinella succinogenes]
          Length = 521

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 72/201 (35%), Gaps = 32/201 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +  K  +V+ A+SGGVDSSVVAALL R  G  +I V            R G   A + 
Sbjct: 218 IQERVKSGKVLCAVSGGVDSSVVAALLYRAIGEKLIPVF-----VDHGLLRAGEREAVEK 272

Query: 73  VYDARRVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           ++      + ++V     D  E F      V  P       GET +   D          
Sbjct: 273 MFK-----ENLHVPLITVDASEIFLGKLKGVSDPETKRKIIGETFIEVFD---------- 317

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +   +  G   LA G  +   +      K      +           +         +L 
Sbjct: 318 VEAKKHDGIQYLAQG-TLYPDVIESVSVKGPSKTIKSHHN-------VGGLPDWMTFELI 369

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L  E+G+ 
Sbjct: 370 EPLRELFKDEVRALGAELGMP 390


>gi|152995561|ref|YP_001340396.1| argininosuccinate synthase [Marinomonas sp. MWYL1]
 gi|189046393|sp|A6VVI2|ASSY_MARMS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|150836485|gb|ABR70461.1| Argininosuccinate synthase [Marinomonas sp. MWYL1]
          Length = 410

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+A  L+ + Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIAKWLQEE-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGIKEIYIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|86152221|ref|ZP_01070432.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86152888|ref|ZP_01071093.1| trna methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121613255|ref|YP_001001276.1| hypothetical protein CJJ81176_1624 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006171|ref|ZP_02271929.1| hypothetical protein Cjejjejuni_08595 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315125038|ref|YP_004067042.1| hypothetical protein ICDCCJ07001_1546 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840710|gb|EAQ57961.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85843773|gb|EAQ60983.1| trna methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249979|gb|EAQ72938.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315018760|gb|ADT66853.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 327

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVG 154
           + TG  +  R    
Sbjct: 108 IITGEVLGQRPMSQ 121


>gi|283457610|ref|YP_003362194.1| GMP synthase [Rothia mucilaginosa DY-18]
 gi|283133609|dbj|BAI64374.1| GMP synthase [Rothia mucilaginosa DY-18]
          Length = 530

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 25/193 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSV AAL+ +  G  +    +          R+G     +     +   
Sbjct: 227 RVICALSGGVDSSVAAALVHKAVGDQLTCFFI-----DHGLLREGEREQVE-----QDYA 276

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            ++ +     D  ERF      V  P A   A G   +   +  +      L++   + G
Sbjct: 277 ASMGIKVITIDESERFLSALEGVTEPEAKRKAIGREFIRSFEEAQ----RKLIAEAGEEG 332

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD+            V   G       +           +         +L  PL  + K
Sbjct: 333 ADIKFLVQGTLYPDVVESGGGDGTANIKSHHN-------VGGLPDDLTFELVEPLRTLFK 385

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+G+ 
Sbjct: 386 DEVRAIGRELGVP 398


>gi|281418892|ref|ZP_06249910.1| PP-loop domain protein [Clostridium thermocellum JW20]
 gi|281407349|gb|EFB37609.1| PP-loop domain protein [Clostridium thermocellum JW20]
          Length = 269

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 46/205 (22%)

Query: 14  LDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L    K+M  V+VA SGGVDS+    LLK   +DV+G      N   A   + +    ++
Sbjct: 10  LKARLKEMESVIVAFSGGVDST---FLLKVA-HDVLG------NKVLAVTARSAAFPERE 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA        +       EE               A   P  C  C + + FS +  +
Sbjct: 60  LKDAENFASNYGIPFKTIISEELNVEGF---------AENPPNRCYLCKKEL-FSKIKRI 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                   +  G          DD    R   + ++                   +  PL
Sbjct: 110 AEDEDYKFVVEG-------SNYDDLGDYRPGLKAIEELE----------------IVSPL 146

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            +  + K  +R L++EMGL   DK 
Sbjct: 147 REVGLTKAEIRKLSKEMGLKTWDKP 171


>gi|148359261|ref|YP_001250468.1| GMP synthetase [Legionella pneumophila str. Corby]
 gi|296107308|ref|YP_003619008.1| GMP synthase (glutamine-hydrolysing) [Legionella pneumophila
           2300/99 Alcoy]
 gi|226739638|sp|A5ICM2|GUAA_LEGPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148281034|gb|ABQ55122.1| GMP synthetase [Legionella pneumophila str. Corby]
 gi|295649209|gb|ADG25056.1| GMP synthase (glutamine-hydrolysing) [Legionella pneumophila
           2300/99 Alcoy]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL R  G  ++ V      L+L  + +     G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHRAIGEQLVCVFVDTGLLRLNEAEQVLSMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSV 132
                  + +     + E++F  A+             G T +                 
Sbjct: 278 -----RHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEV-----------FDEE 321

Query: 133 TRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++L     LA G  Y               ++ +           +          L  
Sbjct: 322 AQKLTDIKWLAQGTIYPDVIESAATSTNDAAVVIKSHHN-------VGGLPDTLNLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+ ++ K+ VR +  E+GL 
Sbjct: 375 PIRELFKDEVRQVGLELGLP 394


>gi|114771028|ref|ZP_01448468.1| GMP synthase [alpha proteobacterium HTCC2255]
 gi|114548310|gb|EAU51196.1| GMP synthase [alpha proteobacterium HTCC2255]
          Length = 519

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 81/243 (33%), Gaps = 51/243 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A LL    G  +  V                  A + V   R 
Sbjct: 222 DNQVICGLSGGVDSSVAAVLLHEAIGDQLTCVF-------VDHGLLRMGEAEEVVTMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
             D  N+     D +E F            +  ET        R +     +       +
Sbjct: 274 --DHYNMKLIHADEQELFLGQ-----LDGQSDPETK-------RKIIGKLFIDVFDKYAK 319

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            +GA  LA G      +          +  +           +    ++    L  PL +
Sbjct: 320 PIGAKFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMDMALVEPLRE 372

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQI 252
           + K+ VR+L +E+GL  +         FV +  +         G+A+   G+I     +I
Sbjct: 373 LFKDEVRELGKELGLPSS---------FVGRHPF------PGPGLAIRCPGEITREKLKI 417

Query: 253 LGR 255
           L +
Sbjct: 418 LRK 420


>gi|240103538|ref|YP_002959847.1| thiamine biosynthesis protein ThiI [Thermococcus gammatolerans EJ3]
 gi|239911092|gb|ACS33983.1| Thiamine biosynthesis protein (ThiI) [Thermococcus gammatolerans
           EJ3]
          Length = 380

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 53/236 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V A L+ + G +VI V +                  + +   R++
Sbjct: 179 QGKVVALLSGGIDSPVAAFLMMKRGVEVIPVHI--------------YMGEKTLEKVRKI 224

Query: 80  CDTINVSHY-------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            + +   HY       V   + + R  +I         G+    CV C    KF  ++  
Sbjct: 225 WNQLKKYHYGGKAELIVV--KPKERKRIIEKLKE---LGKEKYTCVFC----KF-MMVRH 274

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             ++  D  A G      + +GD       + +      +  Y +   +   +     PL
Sbjct: 275 ADKIAKDFGAKG------IVMGD------SLGQVASQTLENMYIVSQASDLPIYR---PL 319

Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQ-----QGKYFDVVKRINAGIALE 242
             M KE +  +A+ +G  +++   +  +I F+      +G + +  K   A    E
Sbjct: 320 IGMDKEEIVSIAKRIGTFELSTLPE-DEIPFIPRHPIIRGSWEEFRKLYRAVFGEE 374


>gi|289581216|ref|YP_003479682.1| NAD+ synthetase [Natrialba magadii ATCC 43099]
 gi|289530769|gb|ADD05120.1| NAD+ synthetase [Natrialba magadii ATCC 43099]
          Length = 332

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 73/211 (34%), Gaps = 44/211 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVVAMSGG+DS+V A L     G + V+G+TL                  +D  DAR + 
Sbjct: 53  VVVAMSGGLDSTVTATLAVEALGPERVLGLTL-----------PCHKTEQRDARDARTLA 101

Query: 81  DTINVSHYVFDYE---ERFRNAVIVPFASSYAAG-------ETPLPCVDCNRTVKFSDLL 130
             + +           E F + V          G          +   D  R        
Sbjct: 102 AGLGMEFAEIQLRPLLELFDDTVAS-VLECRLDGSRDGSRDRDGIEDDDSGR-------- 152

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                 G D  A+G        +G+   R R+ C      R+Q   L    + +L    F
Sbjct: 153 DGESTSGTDS-ASGRPNERNCELGNVVARLRMSCAYYAANREQRLVLGTANRSELALGYF 211

Query: 191 -----------PLGDMKKESVRDLAREMGLD 210
                      P+GD+ K  VR LA+ +G+ 
Sbjct: 212 TKYGDGAADTYPIGDLYKTEVRALAQRIGVP 242


>gi|315660070|ref|ZP_07912928.1| GMP synthase [Staphylococcus lugdunensis M23590]
 gi|315494971|gb|EFU83308.1| GMP synthase [Staphylococcus lugdunensis M23590]
          Length = 513

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + K   D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRKRVGDRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  +++    + +ERF N +                 V       F D   
Sbjct: 268 F-------GEGFDMNIIRVNAQERFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +    D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 AAKLTDVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRALGIELGIP 382


>gi|170723354|ref|YP_001751042.1| GMP synthase [Pseudomonas putida W619]
 gi|226739707|sp|B1JDH6|GUAA_PSEPW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169761357|gb|ACA74673.1| GMP synthase, large subunit [Pseudomonas putida W619]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T +          F      +
Sbjct: 279 ----ENMGVKVIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDV--------FDA--EAS 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +      LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KLDNIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|14521010|ref|NP_126485.1| GMP synthase subunit B [Pyrococcus abyssi GE5]
 gi|13626967|sp|Q9V0I7|GUAAB_PYRAB RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|5458227|emb|CAB49716.1| guaA-C GMP synthase [glutamine-hydrolyzing] pyrophosphatase subunit
           (EC 6.3.5.2) [Pyrococcus abyssi GE5]
          Length = 308

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 33/199 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D + ++A+SGGVDSS  A L     Y  IG   +L+     +           
Sbjct: 13  EIRETVGDSKAIIALSGGVDSSTAAVLA----YKAIGD--KLHAVFVNTGFLRKGEPEFV 66

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLS 131
           V   R   D   ++ +  D ++RF +A           G T P         V       
Sbjct: 67  VKTFR---DEFGMNLHYVDAQDRFFSA---------LKGVTDPEEKRKIIGRVFIEVFEE 114

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R++GA+ L  G      +      K                  +    ++    L  P
Sbjct: 115 VAREIGAEYLIQGTIAPDWIESQGKIKSHHN--------------VGGLPERLNLKLIEP 160

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+LA+ +GL 
Sbjct: 161 LRDLYKDEVRELAKFLGLP 179


>gi|254173377|ref|ZP_04880050.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
 gi|214032786|gb|EEB73615.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
          Length = 271

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 22/126 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VVA SGG DS V   L K   Y V           +A        A + + +A+R+ +
Sbjct: 54  KAVVAYSGGKDSVVALYLAKEV-YKV--------PELEAVMVDHGLMAEEAIENAKRIAE 104

Query: 82  TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + V   V   DY + FRNA++          +   PC  C++      L     + G  
Sbjct: 105 HLGVPFKVLRYDYSDIFRNALL----------KAQSPCRACSKRT-MEKLRKYALRNGYR 153

Query: 140 VLATGH 145
            + TGH
Sbjct: 154 YIITGH 159


>gi|332186867|ref|ZP_08388609.1| GMP synthase (glutamine-hydrolyzing) [Sphingomonas sp. S17]
 gi|332013200|gb|EGI55263.1| GMP synthase (glutamine-hydrolyzing) [Sphingomonas sp. S17]
          Length = 517

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 67/198 (33%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV A L+    G  +  V            R+G          A +V 
Sbjct: 221 RVICGLSGGVDSSVAALLIHEAIGDQLTCVF-----VDGGILRQGE---------AEQVV 266

Query: 81  D----TINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  N+     D +E F      V  P A     G+T                 +  
Sbjct: 267 SLFRGHYNIPLVHVDAQELFMGGLAGVTDPEAKRKFIGKTF-----------IDVFEAEA 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++ GA+ LA G      +          +  +           +    ++    L  PL
Sbjct: 316 KKIGGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L RE+GL 
Sbjct: 369 RELFKDEVRVLGRELGLP 386


>gi|319900168|ref|YP_004159896.1| argininosuccinate synthase [Bacteroides helcogenes P 36-108]
 gi|319415199|gb|ADV42310.1| argininosuccinate synthase [Bacteroides helcogenes P 36-108]
          Length = 402

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNE 52

Query: 78  RVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +    YV  D  + +    +              P    +  + F  L       
Sbjct: 53  ENAYKLGAKEYVTIDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|289551759|ref|YP_003472663.1| glutamine-hydrolyzing GMP synthase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181290|gb|ADC88535.1| glutamine-hydrolyzing GMP synthase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 513

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + K   D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRKRVGDRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  +++    + +ERF N +                 V       F D   
Sbjct: 268 F-------GEGFDMNIIRVNAQERFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +    D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 AAKLTDVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRALGIELGIP 382


>gi|74317769|ref|YP_315509.1| GMP synthase [Thiobacillus denitrificans ATCC 25259]
 gi|91206837|sp|Q3SI29|GUAA_THIDA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|74057264|gb|AAZ97704.1| GMP synthase [Thiobacillus denitrificans ATCC 25259]
          Length = 520

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSVVAALL R  G  +  V +                    + +A +V  
Sbjct: 225 VILGLSGGVDSSVVAALLHRAVGDQLTCVFVDN--------------GLLRLNEAEQVME 270

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTR 134
                + V     D  ERF   +             G                       
Sbjct: 271 TFAQNLGVKVIHVDATERFMRELAGVSDPEQKRKIIGREF-----------VHVFQEEAE 319

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L  A  LA G      +       ++    +           +    +     L  PL 
Sbjct: 320 KLPKAKWLAQGTIYPDVIESASAKTKKAHTIKSHHN-------VGGLPETLHLQLLEPLR 372

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR+L   +GL 
Sbjct: 373 ELFKDEVRELGIALGLP 389


>gi|255692370|ref|ZP_05416045.1| argininosuccinate synthase [Bacteroides finegoldii DSM 17565]
 gi|260621836|gb|EEX44707.1| argininosuccinate synthase [Bacteroides finegoldii DSM 17565]
          Length = 402

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSAEQLKTNE 52

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 53  ENAYKLGAVKYVTLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|325291715|ref|YP_004277579.1| GMP synthase [Agrobacterium sp. H13-3]
 gi|325059568|gb|ADY63259.1| GMP synthase [Agrobacterium sp. H13-3]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 63/199 (31%), Gaps = 38/199 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           RV+ A+SGGVDSSV A L+    G  +  V      ++L  S +                
Sbjct: 224 RVLCALSGGVDSSVAAILIHEAIGDQLTCVYVDHGLMRLGESEQVVGMFR---------- 273

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                D  N+     D  + F      V  P       G   +   +     K       
Sbjct: 274 -----DHYNIPLVHVDAADMFLGQLSGVSDPEVKRKTIGRLFIEVFEA-EAAKI-----A 322

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               GA + LA G      +          +  +           +    ++    L  P
Sbjct: 323 ADGKGAPNFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMQLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L RE+GL 
Sbjct: 376 LRELFKDEVRALGRELGLP 394


>gi|313672100|ref|YP_004050211.1| gmp synthase (glutamine-hydrolyzing) [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938856|gb|ADR18048.1| GMP synthase (glutamine-hydrolyzing) [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 516

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 51/213 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A L+    G  +I V +                      +A +
Sbjct: 219 EKKVLCALSGGVDSSVAAVLVHEAIGDQLICVFVNN--------------GLLRYREAEQ 264

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D   ++    D E+RF  A+                    N  ++        +
Sbjct: 265 VLKTFRDNFKINLIYVDAEDRFLEALRD--IEEPEKKRK----TIGNLFIRI--FEEEAK 316

Query: 135 QLG-----ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +LG              I S  + G     +                +    +     L 
Sbjct: 317 KLGDFEFLVQGTLYPDVIESVSFKGPSATIKTHHN------------VGGLPEDMKFKLI 364

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
            PL ++ K+ VR +  E+GL       S+DI F
Sbjct: 365 EPLRELFKDEVRKVGLELGL-------SEDILF 390


>gi|305666262|ref|YP_003862549.1| argininosuccinate synthase [Maribacter sp. HTCC2170]
 gi|88708253|gb|EAR00490.1| argininosuccinate synthase [Maribacter sp. HTCC2170]
          Length = 396

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 14/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S  A  L K  GY+V  V                  + +++ +     
Sbjct: 3   KVVLAYSGGLDTSYCAKYLSKEKGYEVHAV-----------SVNTGGFSKEEISEINSKA 51

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
             +  + Y   D  + F + V+              P  V   R V+  ++++  +++GA
Sbjct: 52  IELGATTYTSIDAVQIFYDKVVKYLIFGNVLKNNTYPLSVSAERIVQAIEIVNHAKKMGA 111

Query: 139 DVLATG 144
           D +A G
Sbjct: 112 DYIAHG 117


>gi|205355646|ref|ZP_03222416.1| hypothetical protein Cj8421_1687 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346423|gb|EDZ33056.1| hypothetical protein Cj8421_1687 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 327

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 53/259 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          GS      V   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIEVKALNINI--------GFGSTSDKSKVM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVGADFEMIDVRNSYLQEVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +  R        R   M +   L  D+         + +C    PL    K   
Sbjct: 108 IITGEVLGQRPMSQ----RSDAMAKVKKLALDEE----DLILRPMCAKNLPL---TKPE- 155

Query: 201 R---------------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
           R                     +LA + GL+  +       C +         K+I   I
Sbjct: 156 REGWVDREKLEGISGRSRKRQLELAAKFGLEDFESPG--GGCLLT---LDSFAKKIRDFI 210

Query: 240 ALEGDIVHLNGQIL--GRH 256
             + D+   + Q+L  GRH
Sbjct: 211 EFDKDMQVNDAQLLKYGRH 229


>gi|167807|gb|AAA33213.1| GMP synthetase [Dictyostelium discoideum]
          Length = 718

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 30/204 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            + +V+V +SGGVDS+V AAL+ +  G + VI + +     RK            +V  A
Sbjct: 266 SNKKVLVLVSGGVDSTVCAALISKAIGPENVIALHIDNGFMRKDESL--------NVEKA 317

Query: 77  RRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             V   + +   V D  + F N    +     SS     +P       R +     + V 
Sbjct: 318 LSV---LGLHLIVVDASQTFYNSTTTIKGHLTSSLKETISPEE----RRKIIGDTFMRVA 370

Query: 134 ----RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYFLFATTQQQLC 186
               ++LG       +  +  L         + +    D+ +   + +  +         
Sbjct: 371 ENEVKKLGL-QPEDVYLAQGTLRPDLIESSSKTVSGVADVIKTHHNDTELVRILRDS--G 427

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL D  K+ VR+L + +GL 
Sbjct: 428 RVVEPLKDYHKDEVRELGKSLGLS 451


>gi|66812710|ref|XP_640534.1| GMP synthetase [Dictyostelium discoideum AX4]
 gi|161783815|sp|P32073|GUAA_DICDI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|60468534|gb|EAL66537.1| GMP synthetase [Dictyostelium discoideum AX4]
          Length = 718

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 30/204 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            + +V+V +SGGVDS+V AAL+ +  G + VI + +     RK            +V  A
Sbjct: 266 SNKKVLVLVSGGVDSTVCAALISKAIGPENVIALHIDNGFMRKDESL--------NVEKA 317

Query: 77  RRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             V   + +   V D  + F N    +     SS     +P       R +     + V 
Sbjct: 318 LSV---LGLHLIVVDASQTFYNSTTTIKGHLTSSLKETISPEE----RRKIIGDTFMRVA 370

Query: 134 ----RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYFLFATTQQQLC 186
               ++LG       +  +  L         + +    D+ +   + +  +         
Sbjct: 371 ENEVKKLGL-QPEDVYLAQGTLRPDLIESSSKTVSGVADVIKTHHNDTELVRILRDS--G 427

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL D  K+ VR+L + +GL 
Sbjct: 428 RVVEPLKDYHKDEVRELGKSLGLS 451


>gi|227485722|ref|ZP_03916038.1| PP-loop superfamily ATP-binding protein [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236277|gb|EEI86292.1| PP-loop superfamily ATP-binding protein [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 277

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 41/195 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGGVDS   A LLK      I  +L+   N   A   K      +D+ +A+ + 
Sbjct: 19  KIVLAFSGGVDS---ALLLK------IASSLRQNENDVVAMFFKAPSSTEEDLVNAKNLA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + V  Y+ D         +  F   +        C  C   + F   + +  +LG   
Sbjct: 70  EEMQVKLYIKD---------VDIFVDDHITNNEKDRCYHCKSHL-FKQAIDLKDELGYGY 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G          D    R  +    +L       +              +    KE V
Sbjct: 120 VIDG------TNTDDHKVYRPGLMALKNLG-----VVSPLN----------MAGFSKEMV 158

Query: 201 RDLAREMGLDIADKS 215
           R LA E+G+ +A + 
Sbjct: 159 RALASELGVSVAKRP 173


>gi|146340154|ref|YP_001205202.1| GMP synthase [Bradyrhizobium sp. ORS278]
 gi|226738392|sp|A4YSU1|GUAA_BRASO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|146192960|emb|CAL76967.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Bradyrhizobium sp. ORS278]
          Length = 535

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+  +SGGVDS+V A L+    G  +  V                      + +A  
Sbjct: 237 QGKVICGLSGGVDSAVAAVLIHEAIGDQLTCVF--------------VDHGLLRLNEAET 282

Query: 79  VCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V D      N+     D  + F             AG T     +  R       + V  
Sbjct: 283 VVDLFRHHYNIPLVHVDASKLFLGE---------LAGVT---DPEAKRKTIGRLFIDVFE 330

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +++ GAD LA G      +          +  +           +     +    L 
Sbjct: 331 AEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMNMKLV 383

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L RE+GL 
Sbjct: 384 EPLRELFKDEVRVLGRELGLP 404


>gi|14591154|ref|NP_143230.1| GMP synthase subunit B [Pyrococcus horikoshii OT3]
 gi|13626774|sp|O59072|GUAAB_PYRHO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|119389212|pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus
           Horikoshii Ot3
 gi|119389213|pdb|2DPL|B Chain B, Crystal Structure Of The Gmp Synthase From Pyrococcus
           Horikoshii Ot3
 gi|188036150|pdb|2Z0C|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|188036151|pdb|2Z0C|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|254574796|pdb|3A4I|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|254574797|pdb|3A4I|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|3257770|dbj|BAA30453.1| 308aa long hypothetical GMP synthase [Pyrococcus horikoshii OT3]
          Length = 308

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 71/200 (35%), Gaps = 35/200 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSS  A L  +  G  +  V            RKG      
Sbjct: 13  EIRETVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVF-----VNTGFLRKGEPEFV- 66

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLL 130
                +   D   ++ +  D ++RF +A           G T P         V      
Sbjct: 67  ----VKTFRDEFGMNLHYVDAQDRFFSA---------LKGVTDPEEKRKIIGRVFIEVFE 113

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V +++GA+ L  G      +      K                  +    ++    L  
Sbjct: 114 EVAKKIGAEYLIQGTIAPDWIESQGKIKSHHN--------------VGGLPEKLNLKLIE 159

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR+LA+ +GL 
Sbjct: 160 PLRDLYKDEVRELAKFLGLP 179


>gi|289577952|ref|YP_003476579.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527665|gb|ADD02017.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 273

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 48/212 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+     L +  YDV+G      N   A        A  ++ +A  +   I
Sbjct: 19  LIAFSGGVDST----FLAKVSYDVLG------NRALAVTVTSPIHAKSELKEAVELAKKI 68

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            + H V ++ +             +     P   C  C   + FS   ++  + G   + 
Sbjct: 69  GIPHLVVEFNDILE-------IEEFRK--NPLNRCYICKFNL-FSRFKAIAEEKGFKYIL 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G    +   V D    RR +                    +L  +  PL    +KKE +
Sbjct: 119 EG---TNADDVSDFRPGRRALK-------------------ELG-ILSPLLECGIKKEEI 155

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           R L++EMGL   DK      C   +  Y + +
Sbjct: 156 RILSKEMGLPTWDKPSY--ACLASRIPYGEEI 185


>gi|210623589|ref|ZP_03293915.1| hypothetical protein CLOHIR_01865 [Clostridium hiranonis DSM 13275]
 gi|210153459|gb|EEA84465.1| hypothetical protein CLOHIR_01865 [Clostridium hiranonis DSM 13275]
          Length = 255

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V +SGG+DS+VVA L+K+    D +GV + +                 D  DA +V D 
Sbjct: 32  IVGVSGGIDSAVVAYLIKKACPNDSMGVIMSI------------KSNPADRVDAMKVIDG 79

Query: 83  INVSHYVFDYEERFR---NAVIVP------FASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             + +   +  E  +   + V         F   Y      +   +    ++ S + ++ 
Sbjct: 80  CGIEYMDLELAEPHKLILDTVTDNLKEKGLFKEEYLR----MTDANLRARIRMSTIYTIA 135

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LG  V+ T +                      D   D                  PL 
Sbjct: 136 NDLGYLVVGTDNAAELHTGYFTKHG---------DGGVD----------------ILPLA 170

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K  V + A+E+G+ 
Sbjct: 171 NLTKGEVFEWAKELGIH 187


>gi|156937430|ref|YP_001435226.1| GMP synthase (glutamine-hydrolyzing) [Ignicoccus hospitalis KIN4/I]
 gi|156566414|gb|ABU81819.1| GMP synthase (glutamine-hydrolyzing) [Ignicoccus hospitalis KIN4/I]
          Length = 370

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 69/194 (35%), Gaps = 37/194 (19%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDS+  AAL  K  G + I    ++        RKG     ++V   R V 
Sbjct: 23  KVLAAVSGGVDSTTAAALAYKALGPEQI----KVIFIDTGFMRKGEPEWVKNVL--RDV- 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   + D +ERF NAV     +               R V +  +    ++ GA  
Sbjct: 76  ----MPVEIVDAKERFFNAVKGLSDAEEKR--------KAFREVFYQVVSEEAKKWGASW 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC----DLRFPLGDMK 196
           L  G      +                   + Q   L              L  PL ++ 
Sbjct: 124 LVQGTTAPDWIET-------------TGGIKTQHNVLEQLGINVREKWGFKLLEPLVELY 170

Query: 197 KESVRDLAREMGLD 210
           K+ VR +AR +GL 
Sbjct: 171 KDEVRAVARALGLP 184


>gi|87198574|ref|YP_495831.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134255|gb|ABD24997.1| GMP synthase (glutamine-hydrolyzing) [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 540

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 43/218 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYN 56
           ++E  R    ++ +   D RV+  +SGGVDS+V A L+    G  +  V      +++  
Sbjct: 225 MAEFRRTKIAEIREQVGDSRVICGLSGGVDSAVAAVLIHEAIGDQLTCVFVDHGLMRMGE 284

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGET 113
           + +                     +  N+     D    F      V  P A     G+T
Sbjct: 285 AEQVVSLFR---------------NHYNIPLVHKDVSALFLGGLAGVTDPEAKRKFIGKT 329

Query: 114 PLPCVDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
                            +  RQ+ GAD LA G      +          +  +       
Sbjct: 330 F-----------IDVFEAEARQVGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN--- 375

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    ++    L  PL ++ K+ VR L RE+GL 
Sbjct: 376 ----VGGLPERMNMKLVEPLRELFKDEVRALGRELGLP 409


>gi|227328663|ref|ZP_03832687.1| GMP synthase [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 525

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 NDHVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEADQVLEMFGDQFG---- 282

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
                    +N+ H   +            F S  A  + P       R +     +   
Sbjct: 283 ---------LNIVHVAAE----------DRFLSELAGEDEPE----AKRKIIGRVFVGVF 319

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++Q     LA G      +        +  + +           +    ++    L
Sbjct: 320 DEEASKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLKELFKDEVRKIGLELGLP 394


>gi|73663631|ref|YP_302412.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|91206832|sp|Q49UU9|GUAA_STAS1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72496146|dbj|BAE19467.1| GMP synthase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 513

 Score = 61.7 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  N++    D +ERF + +                 +       F D    ++  G
Sbjct: 269 --GEGFNMNIIRVDAQERFMSKLQGVSDPEQKRKIIGNEFIYV-----FDD--EASKLKG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +     L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFQLIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR+L  E+G+ 
Sbjct: 370 DEVRELGIELGIP 382


>gi|317154158|ref|YP_004122206.1| GMP synthase large subunit [Desulfovibrio aespoeensis Aspo-2]
 gi|316944409|gb|ADU63460.1| GMP synthase, large subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 514

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 30/201 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           DL K   D +VV+ +SGG+DS+V A LL R     IG  L          R G       
Sbjct: 210 DLKKQVGDAKVVLGLSGGIDSTVAAVLLHRA----IGRNLHCIFVDNGLLRMGEKEEVVG 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDL 129
                 + +  +++    D    F + ++            G T                
Sbjct: 266 F-----LAEHFDLNVKFVDASREFLDKLVGVTDPEQKRKIIGYTF-----------IDVF 309

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               + +          +   +   +  K    + +           +    ++    L 
Sbjct: 310 DREAKAIEGVRFLGQGTLYPDVIESESFKGPSAVIKSHHN-------VGGLPEKMHLKLV 362

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR  A E+GL 
Sbjct: 363 EPLRELFKDEVRRAAYELGLP 383


>gi|322378352|ref|ZP_08052808.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS1]
 gi|322380922|ref|ZP_08054993.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS5]
 gi|321146645|gb|EFX41474.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS5]
 gi|321149209|gb|EFX43653.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS1]
          Length = 512

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 44/210 (20%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD--G-YDVI----GVTLQLYNSRKASKRK 64
           L + K     RV+ A+SGGVDSSVVA L  +   G  +V+    G+ L+L    +     
Sbjct: 205 LKIKKQVGKERVLCAVSGGVDSSVVACLCSQALPGQLEVVFVDHGL-LRLGEKDQ----- 258

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCN 121
                        ++   +++  +V +    F      V+ P +     G T +      
Sbjct: 259 -----------VIKMFQGLSIPLHVIEASSLFLERLSGVVDPESKRKIIGHTFIEV---- 303

Query: 122 RTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
               F       R  G    LA G        +  D      +  P ++ +   + +   
Sbjct: 304 ----FEKKAQELRASGKIKFLAQG-------TLYPDVIESVRIKGPSEVIKSH-HNVGGL 351

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            ++    L  PL ++ K+ VR L  E+GL 
Sbjct: 352 PEKMDFKLLEPLKELFKDEVRALGLELGLP 381


>gi|255067638|ref|ZP_05319493.1| GMP synthase [Neisseria sicca ATCC 29256]
 gi|261363746|ref|ZP_05976629.1| GMP synthase [Neisseria mucosa ATCC 25996]
 gi|294668524|ref|ZP_06733621.1| GMP synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|255048112|gb|EET43576.1| GMP synthase [Neisseria sicca ATCC 29256]
 gi|288568320|gb|EFC89880.1| GMP synthase [Neisseria mucosa ATCC 25996]
 gi|291309487|gb|EFE50730.1| GMP synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 521

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D EE+F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEEQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|167623309|ref|YP_001673603.1| GMP synthase [Shewanella halifaxensis HAW-EB4]
 gi|226739729|sp|B0TLJ4|GUAA_SHEHH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167353331|gb|ABZ75944.1| GMP synthase, large subunit [Shewanella halifaxensis HAW-EB4]
          Length = 525

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLNEAEQVMEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF +          A      P  +  R +     + + 
Sbjct: 279 -------DHFGLNIVHVDAENRFLD----------AMAGEAEP--EAKRKIIGRVFVEIF 319

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +     +      +  +Y            +   ++   +  +          L  PL 
Sbjct: 320 DEESKKCVNAKWLAQGTIYPDVIESAGSATGKAHCIKSHHN--VGGLPDDMEMGLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|86608644|ref|YP_477406.1| GMP synthase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557186|gb|ABD02143.1| GMP synthase, glutamine-hydrolyzing [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 536

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 33/199 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++A+SGGVDSS +A LL +  G  +  V +      +   RK        ++    
Sbjct: 231 NKKVLLALSGGVDSSTLAFLLHKAIGDQLTCVFI-----DQGFMRKDEPQRLLRLFQ--- 282

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             +  ++  +  D +ERF   +                 +              +++LG 
Sbjct: 283 --EQFHIPVHYVDGQERFLRQLQGVTDPEEKRKRIGAEFI--------RVFEEESQRLGP 332

Query: 138 ADVLATGHY------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + LA G          +       G+R  +  +           +    +     L  P
Sbjct: 333 FEYLAQGTLYPDVIESANTHVDPVTGERIAVKIKSHHN-------VGGLPENLRFKLVEP 385

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR LAR +GL 
Sbjct: 386 LRKLFKDEVRQLARSLGLP 404


>gi|325273801|ref|ZP_08139989.1| GMP synthase [Pseudomonas sp. TJI-51]
 gi|324101060|gb|EGB98718.1| GMP synthase [Pseudomonas sp. TJI-51]
          Length = 525

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T +          F      +
Sbjct: 279 ----ENMGVKVIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDV--------FDA--EAS 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +      LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|319654551|ref|ZP_08008633.1| bifunctional GMP synthase/glutamine amidotransferase [Bacillus sp.
           2_A_57_CT2]
 gi|317393726|gb|EFV74482.1| bifunctional GMP synthase/glutamine amidotransferase [Bacillus sp.
           2_A_57_CT2]
          Length = 517

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +             
Sbjct: 222 DKKVLCALSGGVDSSVVAVLIHKA----IGDQLTCIFVDHGLLRKDEAEGVMKTF----- 272

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              D  N++    D +ERF N +                 +       F D     +  G
Sbjct: 273 --ADGFNMNVIKVDAQERFMNKLKGVSDPEQKRKIIGNEFIYV-----FDD--EAAKLQG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G       +           +    +     L  PL  + K
Sbjct: 324 IDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLNTLFK 373

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 374 DEVRALGTELGIP 386


>gi|319790339|ref|YP_004151972.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1]
 gi|317114841|gb|ADU97331.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1]
          Length = 402

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 42/204 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+A SGG+D+SV+   L   G++VI            +   G      ++ D  + 
Sbjct: 2   GKRVVLAYSGGLDTSVIVRWLADRGFEVI----------TYTADVGQGEELDEIPDKAKA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D +E F     +P   + A  E   P +   +R +    L+ V  ++GA
Sbjct: 52  SGA--VEAIVDDIKEEFARDYCMPLMRAGALYEGKYPLISALSRPLIAKKLVEVAHRVGA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGDM 195
           D +A G                           DQ  F   ++A        +  P+ + 
Sbjct: 110 DYVAHG---------------------STGKGNDQVRFEASVWALDPDIE--VLAPVREW 146

Query: 196 K---KESVRDLAREMGLDIADKSD 216
           +   +E   + A++ G+ +    +
Sbjct: 147 EFKSREEEIEYAKKHGIPVVATKE 170


>gi|285018357|ref|YP_003376068.1| gmp synthase (glutamine amidotransferase) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473575|emb|CBA16078.1| probable gmp synthase (glutamine amidotransferase) protein
           [Xanthomonas albilineans]
          Length = 521

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
             + + V     +  ER+ NA          AG +     +  R V  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNAAERYFNA---------LAGIS---DPEAKRKVIGNLFVDIFDEESN 320

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLHNARWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|171910032|ref|ZP_02925502.1| hypothetical protein VspiD_02630 [Verrucomicrobium spinosum DSM
           4136]
          Length = 273

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 46/199 (23%)

Query: 20  DMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +M+   VA SGGVDSS    LL +   DV+G      +         +    ++  DA  
Sbjct: 13  EMKQAAVAFSGGVDSS----LLLKVAVDVLG------DDAVGVVAVSASLPRKERDDASE 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   +       + +E        P      A   P  C  C   V ++ LL+  R  G 
Sbjct: 63  LARFMGARLVFLETQELD-----DPAY----AANAPNRCFHCKDHV-YAALLNYARGQGI 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             +  G      L           +       +         +         PL ++   
Sbjct: 113 PHILDGMNAEDTL----------DLRPGRAAAK-----KHGVSS--------PLHELGFS 149

Query: 197 KESVRDLAREMGLDIADKS 215
           K  VR+ AR +GL   DK 
Sbjct: 150 KAEVREAARHLGLPNWDKP 168


>gi|291240188|ref|XP_002740001.1| PREDICTED: argininosuccinate synthetase 1-like [Saccoglossus
           kowalevskii]
          Length = 414

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 26/133 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              VV+A SGG+D+S +   LK  GYDVI   +                  +D   AR  
Sbjct: 4   KKTVVLAYSGGLDTSCILVWLKEQGYDVIA-FMANLGQVD-----------EDFDAAREK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVP-------FASSYAAGETPLPCVDCNRTVKFSDLLS 131
              +     ++ D  + F    I P       +   Y  G +    V     V+      
Sbjct: 52  AIKLGAKKVFIVDIRKEFVEEFIYPGIQANALYEDRYQLGTSFARPVIAREQVRI----- 106

Query: 132 VTRQLGADVLATG 144
             +Q GA+ L+ G
Sbjct: 107 -AKQEGAEYLSHG 118


>gi|169831525|ref|YP_001717507.1| NAD+ synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638369|gb|ACA59875.1| NAD+ synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 241

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 37/186 (19%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDS+VVAAL KR            +               QD  DAR + + +N+
Sbjct: 27  GLSGGVDSAVVAALAKRA-----------FPDSSLGVIMPCFSRPQDAEDARLIAEHLNL 75

Query: 86  SHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
                  +  F + +      +Y+ + E  L   +    ++ + L     +     L  G
Sbjct: 76  PTKTVVLDRVFADLLTELCGENYSPSNERDLTVANIKPRLRMTTLYFYAAR--NRYLVAG 133

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
              RS + +G   K         D   D                  PL ++ K  V ++A
Sbjct: 134 TGNRSEIMIGFFTKY-------GDGGAD----------------LLPLANLLKVEVWEMA 170

Query: 205 REMGLD 210
           R + L 
Sbjct: 171 RYLNLP 176


>gi|328715380|ref|XP_001943073.2| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 1
           [Acyrthosiphon pisum]
          Length = 682

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 25/202 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+V +SGGVDS+V AALL R      VI V +     R     +          D + V
Sbjct: 227 KVLVLLSGGVDSTVCAALLHRALDREQVIAVHIDNGFMRLGESEQVMKSLNALGLDVKAV 286

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T +  +      +     V      S    +T  P  +  R +     +    +    
Sbjct: 287 NATFDFKYGTTILPDLH---VSNRTRISPPLCQTSNP--EEKRKIIGDVFVKTADKF--- 338

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRP--------MDLER---DQSYFLFATTQQQLCDL 188
                  + S       G  R  +            D  +   + S  +     +    +
Sbjct: 339 --LKTLNLSSEDVFLAQGTLRPDLIESASRLASTNADTIKTHHNDSKLIRELRDK--GRV 394

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL +  K+ VR L  ++GL 
Sbjct: 395 IEPLQEFHKDEVRRLGMDLGLS 416


>gi|328715378|ref|XP_003245614.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 2
           [Acyrthosiphon pisum]
          Length = 713

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 25/202 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+V +SGGVDS+V AALL R      VI V +     R     +          D + V
Sbjct: 258 KVLVLLSGGVDSTVCAALLHRALDREQVIAVHIDNGFMRLGESEQVMKSLNALGLDVKAV 317

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T +  +      +     V      S    +T  P  +  R +     +    +    
Sbjct: 318 NATFDFKYGTTILPDLH---VSNRTRISPPLCQTSNP--EEKRKIIGDVFVKTADKF--- 369

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRP--------MDLER---DQSYFLFATTQQQLCDL 188
                  + S       G  R  +            D  +   + S  +     +    +
Sbjct: 370 --LKTLNLSSEDVFLAQGTLRPDLIESASRLASTNADTIKTHHNDSKLIRELRDK--GRV 425

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL +  K+ VR L  ++GL 
Sbjct: 426 IEPLQEFHKDEVRRLGMDLGLS 447


>gi|56696977|ref|YP_167339.1| GMP synthase [Ruegeria pomeroyi DSS-3]
 gi|81349738|sp|Q5LRL6|GUAA_SILPO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56678714|gb|AAV95380.1| GMP synthase [Ruegeria pomeroyi DSS-3]
          Length = 519

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V +         ++  +        D   
Sbjct: 221 DKKVICGLSGGVDSSVAAILIHEAIGDQLTCVFV----DHGLLRKNEATEVVGMFRD--- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
                N+     D  + F                 P       R +     + V ++   
Sbjct: 274 ---NYNIQLIHADESDLF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAD 318

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 319 TIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 371

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 372 ELFKDEVRALGRELGLPQS---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|307132050|ref|YP_003884066.1| GMP synthetase (glutamine aminotransferase) [Dickeya dadantii 3937]
 gi|306529579|gb|ADM99509.1| GMP synthetase (glutamine aminotransferase) [Dickeya dadantii 3937]
          Length = 525

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 59/195 (30%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 KDKVILGLSGGVDSSVTALLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           V +         +              F S+ A  + P         V          +L
Sbjct: 273 VMEMFGDQFGLNIVHVAAE------ERFLSALAGIDDPEAKRKTIGRVFVDVFDEEAGKL 326

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +        +  + +           +          L  PL ++
Sbjct: 327 TDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMALGLVEPLKEL 379

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 380 FKDEVRKIGLELGLP 394


>gi|86606329|ref|YP_475092.1| GMP synthase [Synechococcus sp. JA-3-3Ab]
 gi|86554871|gb|ABC99829.1| GMP synthase, glutamine-hydrolyzing [Synechococcus sp. JA-3-3Ab]
          Length = 538

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++A+SGGVDSS +A LL +  G  +  V +      +   RK        ++    
Sbjct: 233 DKRVLLALSGGVDSSTLAFLLHKAIGDQLTCVFI-----DQGFMRKDEPQRLLRLFQ--- 284

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             +  ++  +  D +ERF   +                 +              +++LG 
Sbjct: 285 --EQFHIPVHYVDGQERFLRQLQGVTDPEEKRKRIGAEFI--------RVFEEESQRLGP 334

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + LA G      +   +         R     +   + +    +     L  PL  + K
Sbjct: 335 FEYLAQGTLYPDVIESANTNVDPVTGERIAVKIKSH-HNVGGLPENLRFKLVEPLRKLFK 393

Query: 198 ESVRDLAREMGLD 210
           + VR LAR +GL 
Sbjct: 394 DEVRQLARSLGLP 406


>gi|26987768|ref|NP_743193.1| GMP synthase [Pseudomonas putida KT2440]
 gi|38257494|sp|Q88P21|GUAA_PSEPK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24982461|gb|AAN66657.1|AE016293_7 GMP synthase [Pseudomonas putida KT2440]
 gi|313497398|gb|ADR58764.1| GuaA [Pseudomonas putida BIRD-1]
          Length = 525

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T +          F      +
Sbjct: 279 ----ENMGVKVIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDV--------FDA--EAS 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +      LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|316934639|ref|YP_004109621.1| GMP synthase large subunit [Rhodopseudomonas palustris DX-1]
 gi|315602353|gb|ADU44888.1| GMP synthase, large subunit [Rhodopseudomonas palustris DX-1]
          Length = 540

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V     +     K +G           + V 
Sbjct: 244 KVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGLLRKDEG-----------KAVV 289

Query: 81  D----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLSVTR 134
           D      N+     D  E F  A           G T  P        K       +  R
Sbjct: 290 DLFRHHYNIPLVHVDASETFLGA---------LKGVTD-PEQKRKTIGKLFIDVFEAEAR 339

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GAD LA G      +          +  +           +     +    L  PL 
Sbjct: 340 RVGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMNMKLVEPLR 392

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L RE+GL 
Sbjct: 393 ELFKDEVRALGRELGLP 409


>gi|222053549|ref|YP_002535911.1| thiamine biosynthesis protein [Geobacter sp. FRC-32]
 gi|221562838|gb|ACM18810.1| thiamine biosynthesis protein [Geobacter sp. FRC-32]
          Length = 335

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 113/360 (31%), Gaps = 80/360 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + +  +SGG+DS++   ++   G  V  +    + S   +    +     +   A RV
Sbjct: 2   QKKALALLSGGLDSTLAVKVMLDQGIAVEAL---NFTSPFCTCTSKNAGCKSE---AVRV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--- 136
            +   +   V      +   V  P    +  G+   PC+DC        LL+  R+    
Sbjct: 56  AEEFGIPIKVMHKGLDYLEIVGNP---RHGYGKGMNPCIDCRIF-----LLTKAREYMQA 107

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQQL- 185
            GA  + TG  +  R         R I         + RP+  +         T  +Q  
Sbjct: 108 SGAHFVITGEVLGQRPMSQRRDTLRVIERESGLEGLLLRPLSAKH-----FAPTIPEQEG 162

Query: 186 ----CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
                 L    G  +KE +  LA    LD+ +       C + +  +   VK +    + 
Sbjct: 163 WVDRDRLLAIQGRSRKEQM-QLAE--DLDVKNYPCPAGGCLLTEVSFVPKVKDVFDH-SD 218

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---L 298
             ++       LGRH          R G                + ++VIVG  E+   L
Sbjct: 219 SLNLRDFRLIKLGRH---------FRIG----------------DRTKVIVGRDEAENNL 253

Query: 299 EVHRIYLRE--INWLGDGLFEDAVVDG-----FKCFVKI--RSS--QDPVPVFVQRNDDG 347
               +   E  + W         V         +   KI  R +  +      ++   DG
Sbjct: 254 LESAVQAGEATLRWEEGSSPLTVVTGKQDEALLEKAAKILLRYTKAEPDTECIIKAIVDG 313


>gi|104783362|ref|YP_609860.1| GMP synthase [Pseudomonas entomophila L48]
 gi|122402037|sp|Q1I5K9|GUAA_PSEE4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|95112349|emb|CAK17076.1| GMP synthetase (glutamine aminotransferase) [Pseudomonas
           entomophila L48]
          Length = 525

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T +          F      +
Sbjct: 279 ----ENMGVKVIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDV--------FDA--EAS 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +      LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|15887630|ref|NP_353311.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Agrobacterium tumefaciens str. C58]
 gi|21759162|sp|Q8UIL2|GUAA_AGRT5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|15155177|gb|AAK86096.1| GMP synthase [Agrobacterium tumefaciens str. C58]
          Length = 525

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 62/199 (31%), Gaps = 38/199 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           RV+ A+SGGVDSSV A L+    G  +  V      ++L  S +                
Sbjct: 224 RVLCALSGGVDSSVAAILIHEAIGDQLTCVYVDHGLMRLGESEQVVGMFR---------- 273

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                D  N+     D  + F      V  P       G   +   +     K       
Sbjct: 274 -----DHYNIPLVHVDAADLFLGELSGVSDPEVKRKTIGRLFIEVFEA-EAAKI-----A 322

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
               GA   LA G      +          +  +           +    ++    L  P
Sbjct: 323 ADGKGAPKFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMQLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L RE+GL 
Sbjct: 376 LRELFKDEVRALGRELGLP 394


>gi|18976470|ref|NP_577827.1| NAD synthetase [Pyrococcus furiosus DSM 3638]
 gi|25090761|sp|Q8U4I9|NADE_PYRFU RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|18892011|gb|AAL80222.1| NH(3)-dependent NAD+ synthetase [Pyrococcus furiosus DSM 3638]
          Length = 257

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 75/216 (34%), Gaps = 55/216 (25%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVI-GVTLQLYNSRKASKRKGSCCAG 70
           +  K      VV+ +SGGVDS+ VA L  K  G D I G+ +  Y +             
Sbjct: 15  EFIKENAKQGVVIGISGGVDSATVAYLATKALGKDKILGLIMPYYEN------------- 61

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC--VDCN--RTVKF 126
           +DV DA+ V + + + + + +         I P   +  +            N    V+ 
Sbjct: 62  KDVEDAKLVAENLGIRYKIIN---------IKPIVDTIQSSLDVALDRKSLGNIMARVRM 112

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L S    LG   L  G   RS    G             D   D +            
Sbjct: 113 VLLYSYANSLG--RLVLGTSNRSEFLTG------YFTKWG-DGASDYA------------ 151

Query: 187 DLRFPLGDMKKESVRDLAREMGLD--IADKSDSQDI 220
               PL ++ K  V ++AR +G+   I +K  S  +
Sbjct: 152 ----PLINIYKTEVWEVARIIGVPQSIVEKKPSAGL 183


>gi|282163083|ref|YP_003355468.1| GMP synthase [glutamine-hydrolyzing] subunit B [Methanocella
           paludicola SANAE]
 gi|282155397|dbj|BAI60485.1| GMP synthase [glutamine-hydrolyzing] subunit B [Methanocella
           paludicola SANAE]
          Length = 304

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+    KD R ++A+SGGVDSSV A L  R  G  ++ V            RKG     +
Sbjct: 13  DIKSKVKDGRALIALSGGVDSSVCAILAHRALGERLVPVY-----VDTGLMRKGETDRIR 67

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSD 128
           D++              + D   +F NA+             GET               
Sbjct: 68  DIFSFMNP--------RIVDASGQFFNALKGATDPEKKRKAVGETF-----------IRV 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V R + AD L  G     R+    +G  +                    +  +   +
Sbjct: 109 FEQVARDINADYLIQGTIYPDRIES--EGGIKSHHNVGGMP-----------SVMEFKGV 155

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             P+GD+ K+ VR++AR +GL + 
Sbjct: 156 VEPIGDLYKDEVREVARALGLPLE 179


>gi|149926560|ref|ZP_01914821.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Limnobacter sp. MED105]
 gi|149824923|gb|EDM84137.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Limnobacter sp. MED105]
          Length = 540

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ +  G  +  V     +      ++G                
Sbjct: 226 VILGLSGGVDSSVAAALIHKAIGDQLTCVF---VDHGLLRFKEGEQVMETF-------AK 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG--- 137
            + V     +  E F              G T     +  R +     +    R+ G   
Sbjct: 276 HLGVRVVHVNATEEFMGQ---------LKGVT---DPEAKRKIIGKAFVDVFQREAGMRA 323

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +        +    +           +          L  PL D+ 
Sbjct: 324 NAKWLAQGTIYPDVIESAGAKTGKATSIKSHHN-------VGGLPDTLNLKLLEPLRDLF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GLD
Sbjct: 377 KDEVRKLGVELGLD 390


>gi|309388525|gb|ADO76405.1| NH(3)-dependent NAD(+) synthetase [Halanaerobium praevalens DSM
           2228]
          Length = 254

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 46/193 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+V A L +             +     +         QD  DA ++   +
Sbjct: 35  VVGLSGGIDSAVTARLCQLA-----------FPENLLTVILPCHSNPQDREDALKLASEL 83

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGE---TPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           ++     D  E     V     S+  + +   + L   +    ++ + L    + L   V
Sbjct: 84  DLKVIENDLSE-----VYDHLLSNLKSNKIKGSKLAAANIKPRLRMTSLYYYAQSLSYLV 138

Query: 141 LATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           + T +    ++ Y    G     +                           PLG + K  
Sbjct: 139 VGTDNKSELKIGYFTKHGDGGIDLA--------------------------PLGSLVKYE 172

Query: 200 VRDLAREMGLDIA 212
           VR+LA+E+G+   
Sbjct: 173 VRELAKELGIPTE 185


>gi|282164695|ref|YP_003357080.1| hypothetical protein MCP_2025 [Methanocella paludicola SANAE]
 gi|282157009|dbj|BAI62097.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 310

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 83/263 (31%), Gaps = 46/263 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARRV 79
            V VAMSGG DS+V  ++L          +++  +  +               +   + +
Sbjct: 49  HVAVAMSGGKDSAVTLSILFET------FSMRPDIKFTAITIDEGIDGYRNFSIPRVKEL 102

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + V H V  ++E     V                C  C    + + L +  R +GA+
Sbjct: 103 CDKLGVPHIVVSFQEE----VGCTLDEMLTHERKEASCTYCGVFRR-TLLNTTARNIGAN 157

Query: 140 VLATGHY----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            LATGH      ++ L    +G   R + R                Q+ L     PL D+
Sbjct: 158 KLATGHNLDDDAQTVLLNVMNGDTER-LARLRPSR----------PQEGLIPRIKPLMDV 206

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            +  V   A   GL           C               A  +L G+I  +      R
Sbjct: 207 PEREVALYAFLKGLPFH-----MGEC-------------PYARESLRGEIKDMLNDFESR 248

Query: 256 HNGIINYTIGQRRGLGVAMGEPL 278
           H G     +     +   + E  
Sbjct: 249 HPGTKYSIMRGFDNMVPCLKEKY 271


>gi|305664132|ref|YP_003860420.1| argininosuccinate synthase [Ignisphaera aggregans DSM 17230]
 gi|304378701|gb|ADM28540.1| argininosuccinate synthase [Ignisphaera aggregans DSM 17230]
          Length = 395

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           MRVV+A SGG+D+S +  LL++    +VI VT                    ++ D  + 
Sbjct: 1   MRVVLAYSGGLDTSTILVLLRKKYNAEVITVT-------------VDVGQEDELRDVEKR 47

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +  + HY  D ++ F    I     + A  E   P      R +    +  + ++ G
Sbjct: 48  AYELGAIKHYTIDAKKEFVEEYIFRAIKANALYEGKYPLGTALARPLIAKKVAEIAKKEG 107

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIM 163
           AD +A G   +    V  D   +  +
Sbjct: 108 ADAVAHGCTGKGNDQVRFDITLKAFL 133


>gi|317121384|ref|YP_004101387.1| argininosuccinate synthase [Thermaerobacter marianensis DSM 12885]
 gi|315591364|gb|ADU50660.1| argininosuccinate synthase [Thermaerobacter marianensis DSM 12885]
          Length = 437

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    LK   GYDVI +                   G+D+   RR  
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKETYGYDVIAL-------------SADVGEGKDLDFIRRKA 50

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  V   V D  ERF    ++P   + A  +   P     +R +    L+   RQ GA
Sbjct: 51  LQVGAVEAVVVDARERFARDFVLPALQANALYQGRYPLSAALSRPLIAQLLVETARQYGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAVAHG 116


>gi|149194572|ref|ZP_01871668.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caminibacter mediatlanticus TB-2]
 gi|149135316|gb|EDM23796.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caminibacter mediatlanticus TB-2]
          Length = 511

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV AALL    G  +I +                    ++V  A +
Sbjct: 214 DNKVICALSGGVDSSVTAALLHEAIGDKLIPIF--------VDTGLLRKNEREEVEHAFK 265

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
             + ++V     D +++F + +             G T +                  ++
Sbjct: 266 --NVLHVPLITVDAKDKFLSRLKGVTDPEEKRKIIGHTFIEV-----------FDEEAKK 312

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              A  LA G  +   +      K      +           +    +    +L  PL +
Sbjct: 313 HKDAKFLAQG-TLYPDVIESVSVKGPSKTIKSHHN-------VGGLPEWMKFELIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 LFKDEVRKLGLELGLP 380


>gi|4580030|gb|AAD24213.1| unknown [Pseudomonas putida GB-1]
          Length = 436

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 141 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 189

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T                 +  
Sbjct: 190 ----ENMGVKVIRADAEKQFLDNLEGEADPEKKRKIIGRTF-----------IDIFDAEA 234

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +L     LA G      +        +  + +           +    ++    L  PL
Sbjct: 235 SKLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPL 287

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 288 RELFKDEVRKIGLELGLP 305


>gi|291522347|emb|CBK80640.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus catus GD/7]
          Length = 248

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 36/203 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDA 76
           +  ++ + +SGG DS  +   LK       G+  + Y      +    G      ++   
Sbjct: 22  EGDKIAIGVSGGKDSLTMLYALK-------GLQ-RFYPKHFELEAITVGLGLGNFNMDAV 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           + +C+ +N+ + +   E       I P        +   PC  C +  K   L +   +L
Sbjct: 74  KSLCNELNIPYTIVSTE-------IGPIIFDQRHEK--NPCSLCAKMRK-GALNNKALEL 123

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL----RFPL 192
           G + +A GH+         D     ++   +       Y     T+  L         PL
Sbjct: 124 GCNKIAYGHH--------RDDLVETMLMSLIYEG--HFYAFPPVTK--LERTGLTVIRPL 171

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
             M +  +   AR+  L +A   
Sbjct: 172 LYMTEPDIIGFARKQNLPVAKSP 194


>gi|255264616|ref|ZP_05343958.1| GMP synthase (glutamine-hydrolyzing) [Thalassiobium sp. R2A62]
 gi|255106951|gb|EET49625.1| GMP synthase (glutamine-hydrolyzing) [Thalassiobium sp. R2A62]
          Length = 520

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 75/230 (32%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+  +SGGVDSSV A LL    G  +  V            RKG   A + V   R 
Sbjct: 222 NKQVICGLSGGVDSSVAAVLLHEAIGDQLTCVF-----VDHGLLRKGE--ADEVVTMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             D  N+     D ++ F                 P         +          ++ G
Sbjct: 274 --DNYNMKLIHADEQDLF--------LGELDGQSDPETKRKIIGKLFIDVFQKYANEIDG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +             +           +    ++    L  PL ++ K
Sbjct: 324 AEFLAQGTLYPDVIESVSFSGGPSATIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 377 DEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|300864149|ref|ZP_07109043.1| GMP synthase [Oscillatoria sp. PCC 6506]
 gi|300337839|emb|CBN54189.1| GMP synthase [Oscillatoria sp. PCC 6506]
          Length = 537

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RK        ++     
Sbjct: 233 DKRVLLALSGGVDSSTLAFLLHKA----IGAQLTCMFIDQGFMRKYEPERLVKLFH---- 284

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLG- 137
            +  ++     +  +RF   +         AG T       +   +F       +++LG 
Sbjct: 285 -EQFHIDVQYVNARDRFLAKI---------AGVTDPEVKRKHIGHEFIQVFEEESKRLGP 334

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +   D     +   R     +   + +    +     L  PL  + K
Sbjct: 335 FDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLIEPLRKLFK 393

Query: 198 ESVRDLAREMGLD 210
           + VR L R +GL 
Sbjct: 394 DEVRKLGRSIGLP 406


>gi|242372682|ref|ZP_04818256.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis M23864:W1]
 gi|242349599|gb|EES41200.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis M23864:W1]
          Length = 513

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + +ERF + +                 V       F D     +   
Sbjct: 269 --GEGFDMNIIRVNAQERFMDKLKGVSDPEQKRKIIGNEFVYV-----FDD--EAAKLTD 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|170290591|ref|YP_001737407.1| NAD+ synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174671|gb|ACB07724.1| NAD+ synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 262

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 43/199 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ +SGGVDS+V+  L     G + V G+ L                  +D+ DA  + 
Sbjct: 34  IVLGISGGVDSAVLTKLCVDALGSERVFGLIL----------PDTRVTPEEDIKDAIDLA 83

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++ +          +    I     SY   E        +  +   +L +  R      
Sbjct: 84  ESLKIK---------YWRRDIDDIIDSYERSE----FYVHDHKLALGNLRARVRMSLLYY 130

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A    +                 +  D   D                  P+GD+ K  V
Sbjct: 131 VANSRNLLVAGSGDRSEILIGYFTKYGDGGAD----------------LLPIGDLYKTQV 174

Query: 201 RDLAREMGLD--IADKSDS 217
           R +A  +GL   IA K  S
Sbjct: 175 RWMAEWLGLPERIARKPSS 193


>gi|169831320|ref|YP_001717302.1| PP-loop domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638164|gb|ACA59670.1| PP-loop domain protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 297

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 32/224 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA+SGG DS  VA +L R GY V GV + L         + +    +    AR    
Sbjct: 49  RVLVAVSGGKDSLTVADVLDRLGYAVRGVHVDLGIDDNGFSSESTALCREFFT-AR---- 103

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGADV 140
              +   ++  +ERF  ++          G      C  C  T K   + +   + G D 
Sbjct: 104 --GLPLEIYSLKERFGRSIKD-------VGRRFNRFCSICGMT-KRHVMNARAVEQGLDA 153

Query: 141 LATGHY---IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLGDMK 196
           LATGH    + + L+       RR + +           L +   +   C    PL  + 
Sbjct: 154 LATGHNLDDLSAALFANLMRWDRRYLAKG----------LPSLPPEGGFCRKIKPLALLS 203

Query: 197 KESVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAG 238
           ++ +   A    +    A    S++  F +  +    V+  + G
Sbjct: 204 EKEIATYAAVRDIRMVTATCPYSREAKFKRYKELLAAVEHQSPG 247


>gi|171185967|ref|YP_001794886.1| GMP synthase [Thermoproteus neutrophilus V24Sta]
 gi|170935179|gb|ACB40440.1| GMP synthase, large subunit [Thermoproteus neutrophilus V24Sta]
          Length = 505

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            + +  KD  V++ +SGG+DS+V A L          V + + +  KA           +
Sbjct: 203 QIREEVKDGDVIIGVSGGIDSTVTAIL----------VHMAVGDRAKAVFIDHGLFREGE 252

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAV--IVPFASSYAA-GETPLPCVDCNRTVKFSDL 129
                 +  ++ +  +  D  ERF   +  +          GET            F+++
Sbjct: 253 PERVVALLSSLGIKTHYVDARERFLARLEGVSDCEEKRRIIGET------------FAEV 300

Query: 130 LSVTRQL--GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            +    L   A  LA G      +  G          +  D  +   + +    +     
Sbjct: 301 FAEAISLFPQAKYLAQGTLYPDVIESGA--------VKGADKIKSH-HNVGGMPKWFTLK 351

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL +  K+ VR LA+ +GL 
Sbjct: 352 LVEPLREFYKDEVRRLAKALGLP 374


>gi|50304843|ref|XP_452377.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641510|emb|CAH01228.1| KLLA0C04037p [Kluyveromyces lactis]
          Length = 420

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V+   +                  +D   A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVVA-FMAN------------VGQEEDFEAAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I      + D  E F   V+ P           Y  G +    V     +      
Sbjct: 49  KALLIGATKFVLVDCREEFVKDVLFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 103 DVAKQEGCFAVSHG 116


>gi|301301394|ref|ZP_07207534.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300850999|gb|EFK78743.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 518

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           + +   +    + +   D +V++ +SGGVDSSVV  LL +  G  +  +           
Sbjct: 206 MDDFIDMQIQKIRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGNQLTSIF-----VDHGL 260

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            RKG          A +V D++     ++    D +ERF N +                 
Sbjct: 261 LRKGE---------AEQVMDSLGGKFGLNIIKVDAKERFLNKLAGVSDPEKKRK------ 305

Query: 118 VDCNRTVK-FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           +  N  ++ F D     +  G + LA G      +  G D  +     +           
Sbjct: 306 IIGNEFIRVFDD--EAAKLEGIEFLAQGTLYTDIIESGTDTAQT---IKSHHN------- 353

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 354 VGGLPEDVQFKLIEPLNTLFKDEVRELGEKLGMP 387


>gi|300717941|ref|YP_003742744.1| GMP synthase [glutamine-hydrolyzing] [Erwinia billingiae Eb661]
 gi|299063777|emb|CAX60897.1| GMP synthase [glutamine-hydrolyzing] [Erwinia billingiae Eb661]
          Length = 526

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 228 NDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQ 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A  + P         V           L  
Sbjct: 274 VMDMFG-DHFGLNIIHVAAE---DRFLDALAGIDEPEAKRKTIGRVFVEVFDEHATMLQD 329

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 330 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVEPLKELFK 382

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 383 DEVRKIGLELGLP 395


>gi|282849255|ref|ZP_06258640.1| NAD+ synthetase [Veillonella parvula ATCC 17745]
 gi|282580959|gb|EFB86357.1| NAD+ synthetase [Veillonella parvula ATCC 17745]
          Length = 255

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          VV +SGG DS++VAAL K   G D V+GV +                   D+ DA+ V +
Sbjct: 30 VVGISGGKDSTIVAALCKEALGADRVVGVLMPN-------------GVQSDIDDAQAVVN 76

Query: 82 TINVSHYVFDYEERFR 97
           + + H   +    + 
Sbjct: 77 HLGIPHMTVNIGAAYE 92


>gi|73668265|ref|YP_304280.1| hypothetical protein Mbar_A0722 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395427|gb|AAZ69700.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 272

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 38/184 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGGVDS+ +AAL     ++V+G          A          + +  A      I
Sbjct: 20  VIAFSGGVDSATLAALA----FEVLG------EKALAVTINSPLFPKKQLETAVETACEI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H +  + +          +  Y +  T   C  C + +    LL    + G + +  
Sbjct: 70  GIEHKILSFSQL---------SLPYFSANTLNRCYFCKKAL-LETLLDFAEKAGYNAVLE 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G    S    G++    R +    +  +  S F+                ++ K+ +R++
Sbjct: 120 G--TNSSEIHGENRPGYRAVQEAGE--KIYSPFVEF--------------NVTKDEIREV 161

Query: 204 AREM 207
           A ++
Sbjct: 162 ASKL 165


>gi|325290475|ref|YP_004266656.1| Conserved hypothetical protein CHP00268 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965876|gb|ADY56655.1| Conserved hypothetical protein CHP00268 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 272

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 62/220 (28%)

Query: 9   LNSLDLDKNPKDMRV-----VVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRK 59
           +NSL+  +  K + +      +A SGGVDSS    LLK      G  VI VT +      
Sbjct: 1   MNSLEKLERLKAILINLDGLAIAFSGGVDSS---FLLKVAHEVLGEKVIAVTAR------ 51

Query: 60  ASKRKGSCCAGQ-DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPC 117
                 SC   + ++ +A        + H + D EE      I  F       E P   C
Sbjct: 52  ------SCSFPERELNEAVGFARKYGIKHLIVDSEELD----IEGF------AENPRNRC 95

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C + + FS ++++  +     +A G        + D G  R  M    +L        
Sbjct: 96  YMCKKEL-FSKIITIADEYQLMNIAEG------SNLDDLGDYRPGMQAIEELG------- 141

Query: 178 FATTQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKS 215
                     +  PL    + KE +R+L+  +GL   DK 
Sbjct: 142 ----------VLSPLREASLTKEEIRELSLRLGLKTWDKP 171


>gi|300853679|ref|YP_003778663.1| putative ATPase [Clostridium ljungdahlii DSM 13528]
 gi|300433794|gb|ADK13561.1| predicted ATPase [Clostridium ljungdahlii DSM 13528]
          Length = 290

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 27/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +V VA+SGG DS  +A L +    +            +     +          D +
Sbjct: 52  EGDKVAVAVSGGKDSLTMAKLFQELQKH-----------WKVNFNLEFIAMDPGYHEDIK 100

Query: 78  RV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++    C+ +N+  ++F+    F   V+   A  Y       PC  C   ++   L S  
Sbjct: 101 KLLISNCEYLNIPVHIFE-SGIF--NVVDNIAKDY-------PCYMC-AKMRRGALYSKA 149

Query: 134 RQLGADVLATGHYIR 148
           ++LG + LA GH+  
Sbjct: 150 KELGCNKLALGHHFN 164


>gi|34541632|ref|NP_906111.1| hypothetical protein PG2046 [Porphyromonas gingivalis W83]
 gi|61216584|sp|Q7MTC4|TILS_PORGI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34397950|gb|AAQ67010.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 454

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 37/220 (16%)

Query: 23  VVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+VA+SGG DS  VA L  L+  GY+ +      +     S          D     R+C
Sbjct: 26  VLVALSGGADS--VALLCVLRELGYETVAAHCNFHLRGVESDE--------DAAFVERLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             ++V  +  D+     + V       YA   +    +   R +++     + ++L  + 
Sbjct: 76  RDLDVPLHRIDF-----DTV------RYARERSISIEMAA-RELRYEWFGQLRKELAIEY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A  H+        +       +CR   +       L     ++   +  PL D  ++ +
Sbjct: 124 VAVAHHA-----DDNAETMVLNLCRGTGIS-----GLCGMPYKRNDGIVRPLLDATRDEI 173

Query: 201 RDLAREMGLDIADKSDSQDICF---VQQGKYFDVVKRINA 237
                +  +     S ++D  F   + + +   ++K +N 
Sbjct: 174 EAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNP 213


>gi|84501069|ref|ZP_00999304.1| GMP synthase [Oceanicola batsensis HTCC2597]
 gi|84391136|gb|EAQ03554.1| GMP synthase [Oceanicola batsensis HTCC2597]
          Length = 523

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 78/237 (32%), Gaps = 58/237 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV AALL    G ++  V                      + +A  
Sbjct: 225 DAKVICALSGGVDSSVAAALLHEAIGENLTCVF--------------VDHGLLRLNEAEE 270

Query: 79  VC----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D +N+S      +E F      V  P       G                    
Sbjct: 271 VVGMFRDHMNLSVIHAQEQELFLGALEGVSDPETKRKTIGRLF-----------IDVFQK 319

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              Q+ GA  LA G      +          +  +           +    ++    L  
Sbjct: 320 YADQIEGARFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVE 372

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           PL ++ K+ VR L RE+GL      DS    F+ +  +         G+A+   G+I
Sbjct: 373 PLRELFKDEVRTLGRELGLP-----DS----FIGRHPF------PGPGLAIRCPGEI 414


>gi|210620567|ref|ZP_03292115.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275]
 gi|210155281|gb|EEA86287.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275]
          Length = 430

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V +  +   +  + +      ++  DA  
Sbjct: 135 DKKVLLALSGGVDSSVVAALLIKAIGKQLVCVHV-NHGLMRKGESESVVEIFKNQMDA-- 191

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                  +    D EERF      V  P              +     ++        R+
Sbjct: 192 -------NLIYVDAEERFLGKLEGVADP--EEKRK-------IIGAEFIRV--FEEEARK 233

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D LA G        + + G +   + +           +    +    +L  PL  
Sbjct: 234 LEGIDFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLPEDLGFELVEPLYY 283

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 284 LFKDEVRACGVELGLP 299


>gi|52841950|ref|YP_095749.1| GMP synthase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377336|sp|Q5ZUS0|GUAA_LEGPH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52629061|gb|AAU27802.1| GMP synthetase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 525

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL R  G  ++ V      L+L  + +     G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHRAIGEQLVCVFVDTGLLRLNEAEQVLSMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSV 132
                  + +     + E++F  A+             G T +                 
Sbjct: 278 -----RHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEV-----------FDEE 321

Query: 133 TRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++L     LA G  Y               ++ +           +          L  
Sbjct: 322 AQKLTEIKWLAQGTIYPDVIESAATSTNDAAVVIKSHHN-------VGGLPDTLNLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+ ++ K+ VR +  E+GL 
Sbjct: 375 PIRELFKDEVRQVGLELGLP 394


>gi|332159562|ref|YP_004424841.1| GMP synthase subunit B [Pyrococcus sp. NA2]
 gi|331035025|gb|AEC52837.1| GMP synthase subunit B [Pyrococcus sp. NA2]
          Length = 308

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 33/199 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   + + ++A+SGGVDSS  A L     Y  IG   +L+     +           
Sbjct: 13  EIRETVGNSKAIIALSGGVDSSTAAVLA----YKAIGD--RLHAVFVNTGFLRKGEPEFV 66

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLS 131
           V   R   D   ++ +  D ++RF +A           G T P         V       
Sbjct: 67  VKTFR---DEFGMNLHYVDAQDRFFSA---------LKGVTDPEEKRKIIGRVFIEVFEE 114

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R++GA+ L  G      +      K                  +    ++    L  P
Sbjct: 115 VAREIGAEYLIQGTIAPDWIESQGKIKSHHN--------------VGGLPERLNLKLIEP 160

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+LA+ +GL 
Sbjct: 161 LRDLYKDEVRELAKFLGLP 179


>gi|260893482|ref|YP_003239579.1| NAD+ synthetase [Ammonifex degensii KC4]
 gi|260865623|gb|ACX52729.1| NAD+ synthetase [Ammonifex degensii KC4]
          Length = 243

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 67/240 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DSSV A L KR   D   GV +  Y+S             QD  DA  +  T
Sbjct: 27  VVGLSGGIDSSVAAVLCKRACPDNTLGVIMPCYSS------------PQDAEDAELLART 74

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-----VDCN--RTVKFSDLLSVTRQ 135
             + +     +  +         +    G+             N    ++ + L     +
Sbjct: 75  FEIPYVKIRLDAIYAQ------LAELLTGKRFEELNHRTITLSNLKPRLRMTVLYFFANE 128

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
               V+ TG+  R  L VG   K         D   D                  PL ++
Sbjct: 129 RQYLVVGTGN--RCELTVGHFTKY-------GDGAAD----------------IMPLANL 163

Query: 196 KKESVRDLAREMGLD------------IADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            K  V+++AR +G+                ++D++ + F     Y ++ + I  G A  G
Sbjct: 164 LKFQVQEIARYLGIPERIITRPPSPGLWEGQTDAEGMGFT----YEELDRYILYGEASPG 219


>gi|171184728|ref|YP_001793647.1| NAD synthetase [Thermoproteus neutrophilus V24Sta]
 gi|170933940|gb|ACB39201.1| NAD+ synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 270

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 42/189 (22%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+V AAL     G + V+G+ +                  +D  D   V   + +    
Sbjct: 47  DSTVTAALAVEALGPERVLGLFM-----------PSRHTPPEDAADVAEVAKALGIRLIT 95

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
            D         I P   S+A     LP    +  V   ++++  R      +   +  R 
Sbjct: 96  VD---------ITPIVESFAKA---LPGYSESERVAVGNIMARVRM----TILYYYANRD 139

Query: 150 RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
            L V   G  R  +      +    Y               P+G + K  VR++AR +G 
Sbjct: 140 NLLVAGSGD-RSELLLGYFTK----YGDGGVD-------ILPIGSLYKVQVREMARRLGF 187

Query: 210 -DIADKSDS 217
             IA+K  S
Sbjct: 188 RRIAEKPSS 196


>gi|328544048|ref|YP_004304157.1| GMP synthase-glutamine amidotransferase protein [Polymorphum gilvum
           SL003B-26A1]
 gi|326413792|gb|ADZ70855.1| GMP synthase-glutamine amidotransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 515

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV A L+    G  +  +            RKG          A+ V 
Sbjct: 219 RVICGLSGGVDSSVAAVLIHEAIGDQLTCIF-----VDHGLMRKGE---------AKEVV 264

Query: 81  D----TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                  N+     D  + F +A+             G   +   +             T
Sbjct: 265 SLFRGHYNIPLVHVDAADTFIDALEGESDPEVKRKTIGRLFIEVFEA----------EAT 314

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +  GAD LA G      +          +  +           +    ++    L  PL 
Sbjct: 315 KLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMKLVEPLR 367

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L RE+GL 
Sbjct: 368 ELFKDEVRALGRELGLP 384


>gi|218961201|ref|YP_001740976.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           / fibronectin/fibrinogen-binding protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729858|emb|CAO80770.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           / fibronectin/fibrinogen-binding protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 331

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 76/233 (32%), Gaps = 38/233 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + +   SGG+DS +    ++  GY V  V  +                 + +  A +
Sbjct: 2   KTHKAIALFSGGLDSILAVKWMQSKGYAVHPVFFK----------APYLLPERAINYAAK 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +   V D  E     +  P    Y  G+   PC+DC+  + F     +     A
Sbjct: 52  NA----IDLEVIDVSEEHIKLLNNPV---YGFGKGLNPCIDCHGFM-FKKAAELMPYRDA 103

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
           D L +G  +  R       +        +   +D    +   +Q  L D   PL  G + 
Sbjct: 104 DFLISGEVLGQRPKSQK--RNAMNNVSKLSGVKD--LIVRPLSQNLLPDTL-PLREGWIA 158

Query: 197 KESV-----R------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238
           K+ +     R       LA E+G  I D       C +    Y   ++ +   
Sbjct: 159 KKDMLSIQGRGRLAQLALAEELG--IVDFPSPAGGCLLTDRNYCLRLQDLKKH 209


>gi|257871182|ref|ZP_05650835.1| argininosuccinate synthase [Enterococcus gallinarum EG2]
 gi|257805346|gb|EEV34168.1| argininosuccinate synthase [Enterococcus gallinarum EG2]
          Length = 404

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    L   GYDV+   L +   R     K          D      
Sbjct: 4   KVILAYSGGLDTSVSIKWLTDQGYDVVACCLDIGEGRDTQSIK------DKALDVGA--- 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
              +  Y  D  E F     +         E   P V   +R +    L+ +    GA  
Sbjct: 55  ---IESYAIDAREEFAQDFALIALQGNTFYENSYPLVSALSRPLIAKKLVELAIATGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 VAHG 115


>gi|154151678|ref|YP_001405296.1| GMP synthase subunit B [Candidatus Methanoregula boonei 6A8]
 gi|166215312|sp|A7IA92|GUAAB_METB6 RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|154000230|gb|ABS56653.1| GMP synthase, large subunit [Methanoregula boonei 6A8]
          Length = 305

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 71/200 (35%), Gaps = 37/200 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   + +VV+A+SGGVDSSV A+L  R  G  +I + +          RKG     +
Sbjct: 14  EIQKEAGNEKVVMALSGGVDSSVCASLAARAIGDRLIPIYI-----DTGLMRKGETERIK 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                       N+   V D  + F  A          AG T           +F  +  
Sbjct: 69  --------AVFGNIRLQVVDAGDEFVAA---------LAGITDPEKKRKAIGERFIRVFE 111

Query: 132 V-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              ++ GA  L  G     R+    +G  +         E                 +  
Sbjct: 112 REAKKSGATCLLQGTIYPDRIES--EGGIKSHHNVGGMPE-----------HTAFKKVIE 158

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+ D+ K+ VR++A  +GL 
Sbjct: 159 PIRDLYKDEVREVAGALGLP 178


>gi|256372424|ref|YP_003110248.1| argininosuccinate synthase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009008|gb|ACU54575.1| argininosuccinate synthase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 398

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 23  VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A SGG+D+SV    L+   G+DV+ +                    +D+   R    
Sbjct: 5   VVLAYSGGLDTSVALKWLQVERGFDVVAL-------------SVDVGQQEDLEAVRTRAL 51

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               ++  V D  + F +  I     + A  E   P V   +R +    L+ V R+ GA 
Sbjct: 52  ATGAIAAEVVDARDAFADDYIARAIKADARYENRYPLVSSLSRPLISERLVEVARRYGAS 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|121634172|ref|YP_974417.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neisseria meningitidis FAM18]
 gi|226739648|sp|A1KRY5|GUAA_NEIMF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120865878|emb|CAM09614.1| putative GMP synthetase [Neisseria meningitidis FAM18]
          Length = 521

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMEK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|22298784|ref|NP_682031.1| hypothetical protein tll1241 [Thermosynechococcus elongatus BP-1]
 gi|22294965|dbj|BAC08793.1| tll1241 [Thermosynechococcus elongatus BP-1]
          Length = 277

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 47/197 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++A SGG+DS++VA + +    DV+G      +   A           D+ DAR    
Sbjct: 19  RALIAYSGGIDSTLVAKVAQ----DVLG------DRAVAVTAVSPSLFPADLEDARIQAA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADV 140
            I + H + +  E            +      P   C  C   +    L  + +  G D 
Sbjct: 69  AIGIRHELIETHE----------LENPNYATNPVNRCYFCKSEL-HDRLRELAQAWGYDY 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKE 198
           +  G      +   D    R  +    +                   +R PL +  + K 
Sbjct: 118 VLDG------VNADDLQDYRPGIAAAKERG-----------------VRSPLAEVGISKL 154

Query: 199 SVRDLAREMGLDIADKS 215
            VR +A+ +GL   +K 
Sbjct: 155 EVRAIAKSLGLPWWNKP 171


>gi|294787843|ref|ZP_06753087.1| GMP synthase (glutamine-hydrolyzing) [Simonsiella muelleri ATCC
           29453]
 gi|294484136|gb|EFG31819.1| GMP synthase (glutamine-hydrolyzing) [Simonsiella muelleri ATCC
           29453]
          Length = 520

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L  +                   
Sbjct: 219 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEADNVM--------------- 263

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR 134
           +   + + V     D  E+F             AG T     +  R +  ++ + V    
Sbjct: 264 QMFANNLGVKVIHVDASEQFMAK---------LAGVT---DPEQKRKIIGAEFIEVFDAE 311

Query: 135 QL---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +     A  LA G      +       ++    +           +    +     L  P
Sbjct: 312 EKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEP 364

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 365 LRDLFKDEVRELGVALGLP 383


>gi|149915285|ref|ZP_01903813.1| GMP synthase [Roseobacter sp. AzwK-3b]
 gi|149811006|gb|EDM70845.1| GMP synthase [Roseobacter sp. AzwK-3b]
          Length = 520

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 69/230 (30%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V              G     +       
Sbjct: 222 DKQVICGLSGGVDSSVAAVLIHEAIGDQLTCVF----------VDHGLLRHNEADEVVTM 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             D  N+     D  + F                 P         +          Q+ G
Sbjct: 272 FRDHYNIPLIHADEADLF--------LGELEGVSDPEAKRKTIGRLFIDVFQKYASQIEG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 324 AEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 377 DEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|295115979|emb|CBL36826.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
          methyltransferase, contains the PP-loop ATPase domain
          [butyrate-producing bacterium SM4/1]
          Length = 29

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDG 44
          +  +VVV MSGGVDSSV A LLK  G
Sbjct: 2  EKKKVVVGMSGGVDSSVAAWLLKNRG 27


>gi|196007190|ref|XP_002113461.1| hypothetical protein TRIADDRAFT_26341 [Trichoplax adhaerens]
 gi|190583865|gb|EDV23935.1| hypothetical protein TRIADDRAFT_26341 [Trichoplax adhaerens]
          Length = 667

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 44/221 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAG 70
           ++ +  +D + +V +SGGVDS+V AALL +  G D VI + +     RK           
Sbjct: 206 NIKQKVRDKKALVLVSGGVDSAVCAALLHKALGSDRVIALHIDNGFMRKNES-------- 257

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFR---------------NAVIVPFASSYAAGETPL 115
               D +     I +   +      F                  +  P  + Y+  E   
Sbjct: 258 ---DDVKISLRKIGLDIEILHSAYHFYTSHTSYPIMLEGIPTRHITDPLVNVYSPEE--K 312

Query: 116 PCVDCNRTVKFSDLLSVTRQLGA---DVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLE 170
             +  +  V+ ++     + LG    D++     +R  L      +      + +    +
Sbjct: 313 RHIIGDTFVRVAN--EYLKNLGIEPQDIVLAQGTLRPDLIESASKEASSEAHVIKTHHND 370

Query: 171 RDQSYFLFATTQQQLCD-LRFPLGDMKKESVRDLAREMGLD 210
            D         Q +L + +  PL D  K+ VR L  E+GL 
Sbjct: 371 TD------LVRQLRLQNGIIEPLQDFHKDEVRALGIELGLP 405


>gi|167032045|ref|YP_001667276.1| GMP synthase [Pseudomonas putida GB-1]
 gi|226739706|sp|B0KRE6|GUAA_PSEPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|166858533|gb|ABY96940.1| GMP synthase, large subunit [Pseudomonas putida GB-1]
          Length = 525

 Score = 61.3 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVAALL R  G  +  V      L+L+   +                 
Sbjct: 230 VLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRLHEGDQVMAMFK----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
               + + V     D E++F + +             G T                 +  
Sbjct: 279 ----ENMGVKVIRADAEKQFLDNLEGEADPEKKRKIIGRTF-----------IDIFDAEA 323

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +L     LA G      +        +  + +           +    ++    L  PL
Sbjct: 324 SKLENIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 RELFKDEVRKIGLELGLP 394


>gi|324503970|gb|ADY41713.1| GMP synthase [glutamine-hydrolyzing] [Ascaris suum]
          Length = 769

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 39/207 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSCCAGQD 72
           D +V+V +SGGVDS+V AAL+ +  G D V+ +      ++   S    +          
Sbjct: 310 DKKVLVMVSGGVDSTVCAALMHKALGPDKVVAIHIDNGFMRYNESEGVVEALNKLNLNVK 369

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPC----VDCNRTVKFS 127
            YDA           + F       + V+  P         T  P     +  +  ++  
Sbjct: 370 RYDA----------FHSFICGTVTVDGVVSRPLL------RTTQPEMKRKIIGDTFMRVK 413

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQ 183
           D +    +L  D+      +R  L           +     D  +   + +  +      
Sbjct: 414 DCVMEELKLDKDIFLAQGTLRPDLIESA-----SSLASGHADTIKTHHNDTALVRELRD- 467

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
            L  +  PL D  K+ VR+L   +GL 
Sbjct: 468 -LGKVIEPLKDFHKDEVRELGESLGLP 493


>gi|325131559|gb|EGC54266.1| GMP synthase [Neisseria meningitidis M6190]
 gi|325139186|gb|EGC61732.1| GMP synthase [Neisseria meningitidis ES14902]
 gi|325141549|gb|EGC64018.1| GMP synthase [Neisseria meningitidis 961-5945]
 gi|325197583|gb|ADY93039.1| GMP synthase [Neisseria meningitidis G2136]
          Length = 521

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D E +F             AG T     +  R +  ++ + V       + 
Sbjct: 270 NLGVKVIHVDAEGQFMEK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 +  +Y            +   ++   +  +    +     L  PL D+ K+ VR
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKDEVR 375

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 376 ELGVALGLP 384


>gi|134045274|ref|YP_001096760.1| NH(3)-dependent NAD(+) synthetase [Methanococcus maripaludis C5]
 gi|132662899|gb|ABO34545.1| NH(3)-dependent NAD(+) synthetase [Methanococcus maripaludis C5]
          Length = 258

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 46/191 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARR 78
           VVV +SGG+DS++VA L  +  G + V GV +  +  N                    + 
Sbjct: 31  VVVGLSGGIDSALVAYLSVKALGKENVFGVIMPEKNSNPDDE-------------KYGKL 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V +T+ +++ VFD        V+V F A  Y  G+     VD N   +            
Sbjct: 78  VAETLGINYTVFDITP-----VLVAFGAGGYVEGKEFDRRVDANLKPRIR---------- 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                          V     ++  +       + + Y  + T    L      +G++ K
Sbjct: 123 ------------MTEVYYHANKKNYLVAGT-SNKSEIYMGYGTKYGDLGSDFLTIGNLFK 169

Query: 198 ESVRDLAREMG 208
             VR LA  +G
Sbjct: 170 TEVRQLAGHVG 180


>gi|302387387|ref|YP_003823209.1| asparagine synthase [Clostridium saccharolyticum WM1]
 gi|302198015|gb|ADL05586.1| asparagine synthase [Clostridium saccharolyticum WM1]
          Length = 276

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 52/200 (26%)

Query: 23  VVVAMSGGVDSSV---VAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +A SGGVDSS+   VAA      G  V  VT         S+   SC    D+  A R
Sbjct: 24  ICLAFSGGVDSSLLLKVAAEAAEKMGKTVYAVTF-------DSRLHPSC----DLEIAAR 72

Query: 79  VCDTINVSHYVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V   +   H V    E  +  +   P             C  C + + F  L     ++ 
Sbjct: 73  VAKELGGVHRVVSVNELEQKEIRFNPV----------NRCYLCKKKL-FRSLKDFAGKMN 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG--DM 195
              +  G          DD    R   + +               ++L  +  PL    +
Sbjct: 122 IPYIMDG-------TNEDDLHVYRPGIKAL---------------RELG-IISPLAELHI 158

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  V+ LA   G+ +A + 
Sbjct: 159 TKAQVKALASWYGISVASRP 178


>gi|291556343|emb|CBL33460.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium siraeum V10Sc8a]
          Length = 241

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 48/148 (32%), Gaps = 44/148 (29%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA------LLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           D D   K  R+ V +SGG DS V+ A            YD+  VT+            G 
Sbjct: 14  DFDLIQKGDRIAVGVSGGKDSLVLLAGLAQMRRFAEFDYDITAVTI----------DPGF 63

Query: 67  CCAGQDVYDARRVCDTINVSH---------YVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                +     R+C+ ++V            VFD  +                   P PC
Sbjct: 64  NGVPNNYDAVARLCEKLDVPFSLVHTQIGEIVFDIRKE------------------PNPC 105

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGH 145
             C   ++   L    +  G + LA GH
Sbjct: 106 SLC-ANMRRGALHDAAKAAGCNKLALGH 132


>gi|320100383|ref|YP_004175975.1| NH(3)-dependent NAD(+) synthetase [Desulfurococcus mucosus DSM
           2162]
 gi|319752735|gb|ADV64493.1| NH(3)-dependent NAD(+) synthetase [Desulfurococcus mucosus DSM
           2162]
          Length = 276

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 43/192 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + VV +SGG+DSSV   LL    G + V    +                  +D  DA  +
Sbjct: 36  KAVVGLSGGLDSSVTLRLLVDALGANKVTAAIM----------PDTRVTPPEDTRDAAEL 85

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++ V +++           I     SY+     +P  D    +   +L +  R     
Sbjct: 86  AGSLGVEYFIIP---------IDTVVDSYSV----IPGFDAGNRLATGNLRARIRMNILY 132

Query: 140 VLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +A      +RL     G   R  +      +    Y               PL  + K 
Sbjct: 133 YIA------NRLNGIVVGTGDRSELLLGYFTK----YGDGGVD-------VLPLACLYKT 175

Query: 199 SVRDLAREMGLD 210
            VR+L R +GL 
Sbjct: 176 QVRELGRRLGLP 187


>gi|308187759|ref|YP_003931890.1| GMP synthase [Pantoea vagans C9-1]
 gi|308058269|gb|ADO10441.1| GMP synthase [Pantoea vagans C9-1]
          Length = 526

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL R  G  +  V +                    + +A++
Sbjct: 228 NDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDN--------------GLLRLNEAQQ 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A  + P         V          +L  
Sbjct: 274 VMDMFG-DHFGLNIIHVPAEM---RFLDALAGIDEPEAKRKTIGRVFVEVFDEEALKLQD 329

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 330 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 382

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 383 DEVRKIGLELGLP 395


>gi|304398574|ref|ZP_07380446.1| GMP synthase, large subunit [Pantoea sp. aB]
 gi|304353785|gb|EFM18160.1| GMP synthase, large subunit [Pantoea sp. aB]
          Length = 526

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL R  G  +  V +                    + +A++
Sbjct: 228 NDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDN--------------GLLRLNEAQQ 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +            F  + A  + P         V          +L  
Sbjct: 274 VMDMFG-DHFGLNIIHVPAEM---RFLDALAGIDEPEAKRKTIGRVFVEVFDEEALKLQD 329

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 330 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 382

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 383 DEVRKIGLELGLP 395


>gi|254521778|ref|ZP_05133833.1| glutamine amidotransferase [Stenotrophomonas sp. SKA14]
 gi|219719369|gb|EED37894.1| glutamine amidotransferase [Stenotrophomonas sp. SKA14]
          Length = 521

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
             + + V     +  +R            Y A    +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVVRVNAADR------------YFAALEGVSDPEAKRKIIGNLFVEIFDEESN 320

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLKNAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|190574033|ref|YP_001971878.1| GMP synthase [Stenotrophomonas maltophilia K279a]
 gi|226739746|sp|B2FNS1|GUAA_STRMK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190011955|emb|CAQ45577.1| putative GMP synthase (glutamine-hydrolyzing) [Stenotrophomonas
           maltophilia K279a]
          Length = 521

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
             + + V     +  +R            Y A    +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVVRVNAADR------------YFAALEGVSDPEAKRKIIGNLFVEIFDEESN 320

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLKNAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|148558733|ref|YP_001257376.1| GMP synthase [Brucella ovis ATCC 25840]
 gi|226738395|sp|A5VU71|GUAA_BRUO2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148370018|gb|ABQ62890.1| GMP synthase [Brucella ovis ATCC 25840]
          Length = 520

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        +G  +T  L +     K +           A++V
Sbjct: 224 KVICALSGGVDSSVAALLAHEA----VGDQLTCILVDHGLMRKDE-----------AQQV 268

Query: 80  C----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +  N+   + D  +RF          +  +   P         +         R+
Sbjct: 269 VEMFREHYNLPLILVDASDRF--------IGALESESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L GAD L  G      +          +  +           +    ++    L  PL +
Sbjct: 321 LGGADFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRE 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+GL 
Sbjct: 374 LFKDEVRLLGKELGLP 389


>gi|194365449|ref|YP_002028059.1| GMP synthase [Stenotrophomonas maltophilia R551-3]
 gi|226739745|sp|B4SSX7|GUAA_STRM5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194348253|gb|ACF51376.1| GMP synthase, large subunit [Stenotrophomonas maltophilia R551-3]
          Length = 521

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
             + + V     +  +R            Y A    +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVVRVNAADR------------YFAALEGVSDPEAKRKIIGNLFVEIFDEESN 320

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLKNAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|303247271|ref|ZP_07333545.1| GMP synthase, large subunit [Desulfovibrio fructosovorans JJ]
 gi|302491430|gb|EFL51318.1| GMP synthase, large subunit [Desulfovibrio fructosovorans JJ]
          Length = 516

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 69/200 (34%), Gaps = 30/200 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K   D  VV A+SGGVDS+VVA +L +     IG  L          R G        
Sbjct: 213 LKKQVGDDEVVCALSGGVDSTVVAVMLHKA----IGKKLHCIFVDNGLLRLGEGEEV--- 265

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             A  + +  +++ Y     + F +    V  P       G T +   +           
Sbjct: 266 --AAYLREHFDLNLYYIKASKLFLDRLAGVTDPEKKRKIIGTTFIEVFEA---------- 313

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +   A  LA G  +   +   +  +    + +           +    +     L  
Sbjct: 314 EAAKLPKAKYLAQG-TLYPDVIESESFRGPSAVIKSHHN-------VGGLPEHMKLQLIE 365

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +A E+GL 
Sbjct: 366 PLRELFKDEVRKVAAEIGLP 385


>gi|15606397|ref|NP_213777.1| argininosuccinate synthase [Aquifex aeolicus VF5]
 gi|5915698|sp|O67213|ASSY_AQUAE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|2983600|gb|AAC07170.1| argininosuccinate synthase [Aquifex aeolicus VF5]
          Length = 401

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 42/205 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV++A SGG+D+S++   L   GY+VI  T  +    + S+             ARR
Sbjct: 2   KKKRVILAYSGGLDTSIIVRWLTEKGYEVITYTADVGQGEELSEIP---------EKARR 52

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 +   V D +E F     +P   + A  E   P     +R +    L+    +  
Sbjct: 53  AGA---IEAIVEDLKETFAENYCLPTLRALALYEGKYPLTAALSRPLIAERLVYYAEKFN 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGD 194
           AD +A G                           DQ  F   ++A        +  P+ +
Sbjct: 110 ADYVAHG---------------------STGKGNDQVRFELSVWALNPDIE--VLAPVRE 146

Query: 195 MK---KESVRDLAREMGLDIADKSD 216
            +   +E   + A+   + +    +
Sbjct: 147 WEFKSREEQVEYAQRFNIPVKATKE 171


>gi|327310318|ref|YP_004337215.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermoproteus uzoniensis 768-20]
 gi|326946797|gb|AEA11903.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermoproteus uzoniensis 768-20]
          Length = 519

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 36/194 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+VA+SGGVDS+V A L  R  G   + +          +         ++V  A +  
Sbjct: 226 KVLVAVSGGVDSTVTAVLTARAVGERAVPIF--------VNHGLFREGEPEEVLSALK-- 275

Query: 81  DTINVSHYVFDYEERFRNAV--IVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQL- 136
             + +     D  E+F   +  +          GET                  V  ++ 
Sbjct: 276 -RLGLDVVYVDASEKFLARLEGVEDCEERRRIIGETFAEV-----------FAEVAAKIE 323

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G      +  G          +  D  +   + +    Q     +  PL D  
Sbjct: 324 GAGWLAQGTLYPDVIESGA--------VKGADRIKSH-HNVAGLPQWLGLKVLEPLRDFY 374

Query: 197 KESVRDLAREMGLD 210
           K+ VR + R +GL 
Sbjct: 375 KDEVRAIGRALGLP 388


>gi|281201631|gb|EFA75840.1| GMP synthetase [Polysphondylium pallidum PN500]
          Length = 689

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 28/202 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+V +SGGVDS+V AAL+ +  G + VI + +                    V  A 
Sbjct: 247 DGKVLVLVSGGVDSTVCAALIAKAIGPERVIALHIDN--------GFMRHEESARVEQAL 298

Query: 78  RVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPC----VDCNRTVKFSDLLS 131
           +V   + +   V D  + F N    I    +      T  P     +  +  +K +D   
Sbjct: 299 KV---LGLRLIVVDASQTFYNSTTTIKGVVTEQLK-ITVHPEEKRKIIGDTFMKVAD--D 352

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYFLFATTQQQLCDL 188
             R+LG +     +  +  L         + +    D+ +   + +  +    +     +
Sbjct: 353 EVRKLGLN-PNEVYLAQGTLRPDLIESSSKTVSGVADVIKTHHNDTELVRLLRET--GRV 409

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D  K+ VR+L + +GL 
Sbjct: 410 VEPLRDYHKDEVRELGKNLGLS 431


>gi|212691683|ref|ZP_03299811.1| hypothetical protein BACDOR_01178 [Bacteroides dorei DSM 17855]
 gi|237725766|ref|ZP_04556247.1| argininosuccinate synthase [Bacteroides sp. D4]
 gi|212665872|gb|EEB26444.1| hypothetical protein BACDOR_01178 [Bacteroides dorei DSM 17855]
 gi|229435574|gb|EEO45651.1| argininosuccinate synthase [Bacteroides dorei 5_1_36/D4]
          Length = 402

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNE 52

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 53  ENAYKLGAVKYVTLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQGLAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|116074322|ref|ZP_01471584.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. RS9916]
 gi|116069627|gb|EAU75379.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. RS9916]
          Length = 528

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 DKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               N+     +  +RF              G T     +  R +            +++
Sbjct: 276 -RKFNIHVEYINARQRFLAK---------LNGIT---DPEEKRKIIGTEFIRVFEEESKR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + R +GL 
Sbjct: 381 KLFKDEVRKVGRNLGLP 397


>gi|38233763|ref|NP_939530.1| argininosuccinate synthase [Corynebacterium diphtheriae NCTC 13129]
 gi|47605389|sp|P61521|ASSY_CORDI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|38200024|emb|CAE49693.1| argininosuccinate synthase [Corynebacterium diphtheriae]
          Length = 399

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G +V+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGEVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F N   +P   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFANDYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAAKKHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             ++ G                    +  D  R +  F     + Q+     P  D    
Sbjct: 112 THVSHG-----------------CTGKGNDQVRFEVGFRNLAPELQI---IAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I     S
Sbjct: 152 RDKAIAFAEEINLPIEQSKKS 172


>gi|190889964|ref|YP_001976506.1| GMP synthase (glutamine-hydrolyzing) protein [Rhizobium etli CIAT
           652]
 gi|218515693|ref|ZP_03512533.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli 8C-3]
 gi|226739709|sp|B3PYH7|GUAA_RHIE6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190695243|gb|ACE89328.1| GMP synthase (glutamine-hydrolyzing) protein [Rhizobium etli CIAT
           652]
          Length = 520

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D RV+ A+SGGVDSSV A L+       +G         + +         + 
Sbjct: 215 EIRKQVGDKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRK 262

Query: 73  VYDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              A  V    +  N+     D  +RF                 P         +     
Sbjct: 263 DEAANVVAMFREHYNLHLLHVDASDRF--------IGELEGVSDPETKRKIIGRLFIETF 314

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L GAD L  G      +          +  +           +    ++    L
Sbjct: 315 EEEAKKLGGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 368 VEPLRELFKDEVRALGRELGLP 389


>gi|271501561|ref|YP_003334587.1| GMP synthase large subunit [Dickeya dadantii Ech586]
 gi|270345116|gb|ACZ77881.1| GMP synthase, large subunit [Dickeya dadantii Ech586]
          Length = 525

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +V 
Sbjct: 229 KVILGLSGGVDSSVTALLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQVM 274

Query: 81  DTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +            + F   ++       F S+ A  + P         V          +
Sbjct: 275 EMFG---------DEFGLNIVHVQAENRFLSALAGIDDPEAKRKTIGRVFVDVFDEEAGK 325

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L     LA G      +        +  + +           +          L  PL +
Sbjct: 326 LTDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMALGLVEPLKE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 379 LFKDEVRKIGLELGLP 394


>gi|226314877|ref|YP_002774773.1| argininosuccinate synthase [Brevibacillus brevis NBRC 100599]
 gi|254807510|sp|C0Z6S0|ASSY_BREBN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226097827|dbj|BAH46269.1| argininosuccinate synthase [Brevibacillus brevis NBRC 100599]
          Length = 419

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             ++V+A SGG+D+SV    L+    YDVI V L                 G+D+   ++
Sbjct: 3   KDKIVLAYSGGLDTSVAIKWLQDTYNYDVIAVAL-------------DVGEGKDLDFVQK 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
               +  +   V D ++ F    ++P   + A  E   P V   +R +    L+ +  + 
Sbjct: 50  KALQVGALKSIVVDAKDAFAEEFVLPALKANAMYEGKYPLVSALSRYLISRVLVEIAEKE 109

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 110 GAVAVAHG 117


>gi|192360356|ref|YP_001982568.1| GMP synthase [Cellvibrio japonicus Ueda107]
 gi|226738415|sp|B3PIG3|GUAA_CELJU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190686521|gb|ACE84199.1| GMP synthase, C- domain protein [Cellvibrio japonicus Ueda107]
          Length = 525

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL R  G  +  V            RK       D++      
Sbjct: 229 KVLLGLSGGVDSSVVAALLHRAIGDQLTCVF-----VDNGLLRKNEGDQVMDMF-----A 278

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL 136
             + V     D E+ F             AG +     +  R +     + V      +L
Sbjct: 279 KNMGVRVIRADAEQLFLGK---------LAGVS---DPEKKRKIIGGTFIDVFDTEATKL 326

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +        +  + +           +    +     L  PL ++
Sbjct: 327 QEVKWLAQGTIYPDVIESAAAKTGKAHVIKSHHN-------VGGLPEDMAFKLVEPLREL 379

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 380 FKDEVRAIGLELGLP 394


>gi|209551875|ref|YP_002283792.1| GMP synthase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226739711|sp|B5ZYE9|GUAA_RHILW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|209537631|gb|ACI57566.1| GMP synthase, large subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 520

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D RV+ A+SGGVDSSV A L+       +G         + +         + 
Sbjct: 215 EIRKQVGDKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRK 262

Query: 73  VYDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              A  V    +  N+     D  +RF                 P         +     
Sbjct: 263 DEAANVVAMFREHYNLHLLHVDASDRF--------IGELEGVSDPETKRKIIGRLFIETF 314

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L GAD L  G      +          +  +           +    ++    L
Sbjct: 315 EEEAKKLGGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 368 VEPLRELFKDEVRALGRELGLP 389


>gi|167749764|ref|ZP_02421891.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702]
 gi|167657247|gb|EDS01377.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702]
          Length = 241

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 44/148 (29%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA------LLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           D D   K  ++ V +SGG DS V+ A            YD+  VT+            G 
Sbjct: 14  DFDLIQKGDKIAVGVSGGKDSLVLLAGLAQMRRFAEFDYDITAVTI----------DPGF 63

Query: 67  CCAGQDVYDARRVCDTINVSH---------YVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                +     R+C+ ++V            VFD  +                   P PC
Sbjct: 64  NGVPNNYDAVARLCEKLDVPFSLVHTQIGEIVFDIRKE------------------PNPC 105

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGH 145
             C   ++   L    +  G + LA GH
Sbjct: 106 SLC-ANMRRGALHDAAKAAGCNKLALGH 132


>gi|119946570|ref|YP_944250.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychromonas ingrahamii 37]
 gi|226739708|sp|A1SYT6|GUAA_PSYIN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119865174|gb|ABM04651.1| GMP synthase (glutamine-hydrolyzing) [Psychromonas ingrahamii 37]
          Length = 526

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           +     D  V++ +SGGVDSSVVA LL+R  G  +  V      L+L   ++     G  
Sbjct: 222 MKAQIGDDEVILGLSGGVDSSVVAMLLQRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-- 279

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   +     + E RF             AGE+     +  R +   
Sbjct: 280 -------------DHFGLKIIHVNAEHRFLEQ---------MAGES---DPEAKRKIIGR 314

Query: 128 DLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 315 VFVEIFDEESKKLKNAKWLAQGTIYPDVIESAGSKTGKAQVIKSHHN-------VGGLPD 367

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 368 DMEMGLVEPLRELFKDEVRKIGLELGLP 395


>gi|86355954|ref|YP_467846.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli CFN 42]
 gi|123513305|sp|Q2KDG7|GUAA_RHIEC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|86280056|gb|ABC89119.1| GMP synthase - glutamine amidotransferase protein [Rhizobium etli
           CFN 42]
          Length = 520

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D RV+ A+SGGVDSSV A L+       +G         + +         + 
Sbjct: 215 EIRKQVGDKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRK 262

Query: 73  VYDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              A  V    +  N+     D  +RF                 P         +     
Sbjct: 263 DEAANVVAMFREHYNLHLLHVDASDRF--------IGELEGVSDPETKRKIIGRLFIETF 314

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L GAD L  G      +          +  +           +    ++    L
Sbjct: 315 EEEAKKLGGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 368 VEPLRELFKDEVRALGRELGLP 389


>gi|57505254|ref|ZP_00371183.1| exsB protein [Campylobacter upsaliensis RM3195]
 gi|57016390|gb|EAL53175.1| exsB protein [Campylobacter upsaliensis RM3195]
          Length = 231

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 90/250 (36%), Gaps = 34/250 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++G+++I +    ++  + ++RK   C         ++C
Sbjct: 2   KKALCVISGGMDSTLCAYLAKKEGFEIIALH---FDYNQRTERKEKECF-------HQIC 51

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKF--SDLLSVTR 134
           + + V  HYV +    F   +        +              N  V F     LS+  
Sbjct: 52  EHLGVLKHYVLNAS--FLKDIGGNALVDESLAVPKNALHQNALPNTYVPFRNGIFLSIAA 109

Query: 135 QL----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            L    G + L  G          D  +    + +  +   + +   F  +      ++ 
Sbjct: 110 SLAEKEGCEALYIGVVEEDSSGYPDCSEN--FIKKAENFINEGTSEGFKLS------IKM 161

Query: 191 PLGDMKKESVRDLAREMGLD---IADKSDSQD-ICFVQQGKYFDVVKRINAGIALEGDIV 246
           PL  + K  +  LA +  +         +S+D  C         +     AG+  + +  
Sbjct: 162 PLVYLSKAEIVSLALKENVPLELTWSCYESEDKACGACDSCLLRLKGFEKAGVKDKIEYE 221

Query: 247 HLNGQILGRH 256
           +L+    G H
Sbjct: 222 NLSPDDCGTH 231


>gi|163758298|ref|ZP_02165386.1| putative LPS biosynthesis protein WbpG [Hoeflea phototrophica
           DFL-43]
 gi|162284587|gb|EDQ34870.1| putative LPS biosynthesis protein WbpG [Hoeflea phototrophica
           DFL-43]
          Length = 360

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ +SGGVDS+ VA L+K+ G   + V L   +NS  A            V +  +  +T
Sbjct: 59  VIGVSGGVDSTYVAWLVKKLGLRPLAVHLDNGWNSELA------------VANIEKTLNT 106

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +    +V ++EE           SS+    TP   V  +  + F+ L  +  + G   
Sbjct: 107 LGIDLYTHVLNWEE------FRNLQSSFLKASTPDGEVPTDHAI-FALLYELAAKHGLKH 159

Query: 141 LATG 144
           + TG
Sbjct: 160 VITG 163


>gi|91976746|ref|YP_569405.1| GMP synthase [Rhodopseudomonas palustris BisB5]
 gi|91683202|gb|ABE39504.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           BisB5]
          Length = 556

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 66/197 (33%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+  +SGGVDS+V A L+    G  +  V     +     K +G     + V D  R
Sbjct: 258 QGKVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGLLRKDEG-----KSVVDLFR 309

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
                N+     D  + F  A           G T     +  R +     + V      
Sbjct: 310 --HHYNIPLVHVDAADTFLGA---------LKGVT---DPEQKRKIIGKLFIDVFDAEAK 355

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GAD LA G      +          +  +           +    ++    L  PL 
Sbjct: 356 VVGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLR 408

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L RE+GL 
Sbjct: 409 ELFKDEVRALGRELGLP 425


>gi|294793075|ref|ZP_06758221.1| NAD+ synthetase [Veillonella sp. 6_1_27]
 gi|294456020|gb|EFG24384.1| NAD+ synthetase [Veillonella sp. 6_1_27]
          Length = 255

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 69/233 (29%), Gaps = 44/233 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG DS++VAAL K   G D V+GV +                   D+ DA+ V +
Sbjct: 30  VVGISGGKDSTIVAALCKEALGADRVVGVLMPN-------------GVQSDIDDAQTVVN 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   +    +                T            +  +           +
Sbjct: 77  HLGIPHMTVNIGAAYE-------------ALTHAIVQAKG----YDAVTGRADLSKDAAI 119

Query: 142 ATGHYIRSRLYVG-----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            T   +R            +G R    C   +      Y  ++T          PL  + 
Sbjct: 120 NTPPRLRMATLYAIGQNLPNGARVANTCNGSED-----YVGYSTKYGDSAGDFSPLAQLV 174

Query: 197 KESVRDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            E VR + +  ++ L + DK  S  +              I       G I  
Sbjct: 175 VEEVRQIGKLLDIPLHLVDKVPSDGLSGQSDEDKLGFTYAILDHYIRTGKIED 227


>gi|85712713|ref|ZP_01043758.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Idiomarina baltica OS145]
 gi|85693445|gb|EAQ31398.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Idiomarina baltica OS145]
          Length = 525

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +V 
Sbjct: 229 KVILGLSGGVDSSVTAMLLHRAIGSQLTCVFVDN--------------GLLRLNEAEQVM 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL-G 137
           +     H+  +            F  +      P     +  N  +          QL  
Sbjct: 275 EMFG-DHFGLNIIPVAAEQ---RFLDALKGEADPEKKRKIIGNTFI--EIFDEQASQLTE 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +        +  + +           +    +     L  PL ++ K
Sbjct: 329 VDWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEDMKLGLVEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|330837271|ref|YP_004411912.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta coccoides DSM
           17374]
 gi|329749174|gb|AEC02530.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta coccoides DSM
           17374]
          Length = 520

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+ +  G  ++ V +                      +A+ 
Sbjct: 222 DRKVLCGLSGGVDSSVAAVLIHKAIGDQLVCVFVNN--------------GMLRKNEAQN 267

Query: 79  VCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V D       +     D E  F +A+                 +     V         R
Sbjct: 268 VVDLFGKHFNMRLEYVDAETAFLDALKGIAEPEAKRK------IIGKMFV--DVFYDAAR 319

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            LG    LA G      +             +           +         +L  PL 
Sbjct: 320 SLGDISFLAQGTLYPDVIESRSPSGGPSATIKSHHN-------VGGLPDDLKWELLEPLK 372

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 373 ELFKDEVRQLGMELGLA 389


>gi|328948557|ref|YP_004365894.1| AraC family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328448881|gb|AEB14597.1| transcriptional regulator, AraC family [Treponema succinifaciens
           DSM 2489]
          Length = 382

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 70/196 (35%), Gaps = 47/196 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVCD 81
           V+VA S GVDS+    LLK   +DV+G           +    SC   +   D A   C 
Sbjct: 135 VIVAFSSGVDST---FLLKVA-HDVLG-------ENAVAVTAKSCSFPKREADEAEEFCK 183

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              + H   D EE             +        C  C + + F+ ++++ ++     +
Sbjct: 184 KEGIRHISVDSEEL--------DIPEFRR-NPKNRCYLCKKEI-FTKIIALAKENKITFV 233

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKES 199
             G        + D+G  R  +    +L                  ++ PL   ++ KE 
Sbjct: 234 CEG------SNMDDNGDYRPGLQAVAELG-----------------VKSPLRYCNLYKEE 270

Query: 200 VRDLAREMGLDIADKS 215
           +R L++EM L    K 
Sbjct: 271 IRALSKEMNLPTWKKQ 286


>gi|309790493|ref|ZP_07685053.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oscillochloris trichoides DG6]
 gi|308227480|gb|EFO81148.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oscillochloris trichoides DG6]
          Length = 513

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 35/202 (17%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +K  ++ RV+ A+SGGVDS+V A ++ R  G  +  V +     R     +      +  
Sbjct: 210 EKVGEEGRVICALSGGVDSAVAALIIHRAIGERLTCVFVDNGLLRLGEAEQVIATFREHF 269

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDL 129
           +          +     D  + F      V  P       GE            KF    
Sbjct: 270 H----------IPLIAVDARDEFLSALENVADPEQKRKIIGE------------KFIRIF 307

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R L GA  LA G      +      +++ +  +           +          L
Sbjct: 308 EREARALNGAQFLAQGTLYPDVIESSAPDRKKGVTIKTHHN-------VGGLPADMQMQL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  M K+ VR    E+GL 
Sbjct: 361 VEPLRYMFKDEVRAAGLELGLP 382


>gi|262306011|gb|ACY45598.1| gln amidotransferase [Argulus sp. Arg2]
          Length = 196

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K+ +V+V +SGGVDSSV AALL +      VI + +     RK   ++            
Sbjct: 42  KNNKVMVLLSGGVDSSVCAALLHKALSPEQVIAIHIDNGFMRKNESQQVFNSLS------ 95

Query: 77  RRVCDTINVSHYVFDYEERFRNA 99
                 + ++ +V +    F + 
Sbjct: 96  -----NLGINVHVINASHTFYDN 113


>gi|159030575|emb|CAO88238.1| guaA [Microcystis aeruginosa PCC 7806]
          Length = 541

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG       +++    
Sbjct: 237 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLMQIFN---- 288

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +  ++     +  +RF   V                    +  ++       + +LG  
Sbjct: 289 -EQFHIGVQYVNARKRFLAQVAGVTDPEEKRRR------IGHEFIQV--FEEESNRLGPF 339

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +   + +    +     L  PL  + K+
Sbjct: 340 DYLAQGTLYPDVIESADSNVDPKTGERVAVKIKSH-HNVGGLPKNLRFKLVEPLRKLFKD 398

Query: 199 SVRDLAREMGLD 210
            VR L R +GL 
Sbjct: 399 EVRKLGRSIGLP 410


>gi|222478529|ref|YP_002564766.1| NAD+ synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451431|gb|ACM55696.1| NAD+ synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 277

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 48/192 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G D + G+T+                    + DA RV  
Sbjct: 50  VLGLSGGIDSTLTAHLAVEALGEDGLHGITM-----------PAEVNDPDVMSDAERVAH 98

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + V +         I P A S                  F           A   
Sbjct: 99  DLGIEYDVVE---------IQPIAESV-----------------FDAFPEAADDRMA--- 129

Query: 142 ATGHYIRSRLYVG---DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           A   Y+R+R  +     + + R ++      E    YF     Q   C+   P+G++ K+
Sbjct: 130 AGNVYVRTRAVLNYFVANAENRIVLGTGNRAEAMTGYFTKYGDQAVDCN---PIGNLYKQ 186

Query: 199 SVRDLAREMGLD 210
            VR LA  +G+ 
Sbjct: 187 QVRQLAAHVGVP 198


>gi|121535460|ref|ZP_01667270.1| GMP synthase, large subunit [Thermosinus carboxydivorans Nor1]
 gi|121305969|gb|EAX46901.1| GMP synthase, large subunit [Thermosinus carboxydivorans Nor1]
          Length = 452

 Score = 60.9 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDSSV A L+ +  G  +  V              G    G+     + 
Sbjct: 157 DKRVLCALSGGVDSSVAAVLVHKAVGDQLTCVF----------VNHGLLRKGEAEQVVKT 206

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
             D  +++    D  ERF N            G T     +  R +             R
Sbjct: 207 FRDGFHINLVYVDASERFLNR---------LRGVT---DPEQKRKIIGEEFIRVFEDEAR 254

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +LG  + L  G        V + G     + +           +    +     L  PL 
Sbjct: 255 KLGDIEFLVQG---TLYPDVIESGTATAAVIKSHHN-------VGGLPEDMQFKLVEPLR 304

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR LARE+ L 
Sbjct: 305 DLFKDEVRILARELNLP 321


>gi|325302866|tpg|DAA34469.1| TPA_exp: GMP synthase [Amblyomma variegatum]
          Length = 293

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI + +     RK    +               
Sbjct: 56  KVLMLVSGGVDSTVCAALLHKALREDQVIALHIDNGFMRKDESAQVEQSL---------- 105

Query: 80  CDTINVSHYVFDYEERFRN---AV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              + +   V D   +F N    V I P         T + C   +   K   +     +
Sbjct: 106 -KHLGLRLRVVDASHQFYNGTTTVPIDPKDPQRKR-TTKMLCQTAHPEEKRKIIGDTFMR 163

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-----QLC---D 187
           +  +V+A        +++G    R  ++     L   Q+  +           QL     
Sbjct: 164 VANEVIAELQLNPDDVFLGQGTLRPDLIESASHLASGQADAIKTHHNDTDLVRQLRARGR 223

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL D  K+ VR L R++GL 
Sbjct: 224 VVEPLKDFHKDEVRALGRDLGLA 246


>gi|116748503|ref|YP_845190.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase / fibronectin/fibrinogen-binding
           protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697567|gb|ABK16755.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase / fibronectin/fibrinogen-binding
           protein [Syntrophobacter fumaroxidans MPOB]
          Length = 329

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 82/253 (32%), Gaps = 31/253 (12%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGG+DS + A +LK    ++IG+  +       +   G             V  T+ +
Sbjct: 11  LISGGLDSMLAARVLKDQELELIGIIFK-------TPFFGPGQGMD-------VGRTVGI 56

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
              V D+ +R    +  P    Y  G    PC+DC+  +   +   V  + GAD L TG 
Sbjct: 57  PVRVIDFTDRHLQMLKNPV---YGYGSQMNPCIDCHALM-LREAGRVMEREGADFLFTGE 112

Query: 146 YIRSRLYVGDDGKRRR---------IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +  R         R           + RP+  +      +          L    G  +
Sbjct: 113 VLGQRPMSQRRDSLRSVEKLCGYPGRVLRPLSAKLLPPTVVEIEGLVDRERLLDIHGRSR 172

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           K   R  A      I D       C + +  +   +K + A     G    +     GRH
Sbjct: 173 K---RQEALARHYGITDYPQPGGGCMLTKEGFARRLKELFARYPEAGP-REVELLKWGRH 228

Query: 257 NGIINYTIGQRRG 269
             +   +I     
Sbjct: 229 FALPGGSICIIGR 241


>gi|281413177|ref|YP_003347256.1| NAD synthase [Thermotoga naphthophila RKU-10]
 gi|281374280|gb|ADA67842.1| NAD synthase [Thermotoga naphthophila RKU-10]
          Length = 268

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 41/204 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               ++VV  SGGVDS+++A L +     V      L  +  A          +++ +A+
Sbjct: 12  KSKKKLVVMFSGGVDSTLLAKLARE----V------LEKNAVALTIDSPVIPRKEIEEAK 61

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + + I + H   +  E     +I            P  C  C R ++ + + +  R+ G
Sbjct: 62  NLANLIGIRHEFIELNELKSRHLIE---------NPPDRCYLC-RKLRDNIVKNWARENG 111

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            DV+A G      L   D    R  +    +      +  F                  K
Sbjct: 112 FDVIADG------LNFSDLQDYRPGVKASTEDGIWHPFIDFEV---------------TK 150

Query: 198 ESVRDLAREMGLDIADKSDSQDIC 221
           E +R+ +R++GL   +K     +C
Sbjct: 151 EEIREYSRKLGLPTWNKPAMACLC 174


>gi|322417767|ref|YP_004196990.1| Thiamine biosynthesis protein-like protein [Geobacter sp. M18]
 gi|320124154|gb|ADW11714.1| Thiamine biosynthesis protein-like protein [Geobacter sp. M18]
          Length = 334

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 40/273 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV--YDAR 77
             + +  +SGG+DS++   +L   G  V  +          +    +C         +A 
Sbjct: 2   QRKAIALLSGGLDSTLAVKVLLEQGIAVEAL--------NFTSPFCTCTGKNAGCKSEAV 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV +   +   V      +   +  P    +  G+   PC+DC   +         ++ G
Sbjct: 54  RVAEEFKIPIKVMHKGADYLEIIRNP---KHGHGKGMNPCIDCRIYL-LKQAREYMKESG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLERDQSYFLFATTQQQ---- 184
           AD + TG  +  R         R I         + RP+  +    +F     + +    
Sbjct: 110 ADFVITGEVLGQRPMSQRRDTLRIIEKESGLEGLLLRPLSAK----HFNPTIPELEGWVD 165

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
              L    G  +KE   +LA E  LD+ +       C + +  +   ++ +        +
Sbjct: 166 REKLLAIQGRSRKEQ-FELAEE--LDVKNYPCPAGGCLLTELSFVGKIRDVFDHSDQ-LN 221

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
           +       LGRH     + IG+R  + +   E 
Sbjct: 222 LRDFRLLKLGRH-----FRIGRRTKVILGRNEA 249


>gi|269792364|ref|YP_003317268.1| argininosuccinate synthase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099999|gb|ACZ18986.1| argininosuccinate synthase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 410

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 49/208 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+SV    LK  GY+VI  T     +             + +      
Sbjct: 4   KGKLVLAYSGGLDTSVAIPWLKEQGYEVITFT-----ADVGQPIDLEGTKAKAIKSGASK 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                   Y+ D  E F    +     + A  +   P     +R +  S L+ V  + GA
Sbjct: 59  A-------YIADLREEFVEEFVWRSLKANAMYQGTYPLNSALSRPLIASHLVKVAEEEGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP------- 191
             +A G                          + Q         +       P       
Sbjct: 112 VAIAHG-----------------------CTGKGQ----DQVRIEVCAKALNPDIVVEAP 144

Query: 192 --LGDMKKESVRDLAREMGLDIADKSDS 217
                  ++   + A + G+ I     S
Sbjct: 145 VRDWHFSRDEEIEYAEKHGIPIPVTKSS 172


>gi|319638175|ref|ZP_07992938.1| GMP synthase [Neisseria mucosa C102]
 gi|317400448|gb|EFV81106.1| GMP synthase [Neisseria mucosa C102]
          Length = 521

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 25/192 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D   
Sbjct: 217 NDEVILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--M 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + V     D EE+F             AG T     +  R +  ++ + V      
Sbjct: 267 FARNLGVRVIHVDAEEQFLAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEK 314

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +       +  +Y            +   ++   +  +    +     L  PL D+ K+
Sbjct: 315 KLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKD 372

Query: 199 SVRDLAREMGLD 210
            VR+L   +GL 
Sbjct: 373 EVRELGVALGLP 384


>gi|170725915|ref|YP_001759941.1| GMP synthase [Shewanella woodyi ATCC 51908]
 gi|226739737|sp|B1KLC1|GUAA_SHEWM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169811262|gb|ACA85846.1| GMP synthase, large subunit [Shewanella woodyi ATCC 51908]
          Length = 525

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 43/207 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKQQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           + +A++V     D   ++    D E RF +A          AGE      +  R +    
Sbjct: 267 LNEAQQVMDMFGDHFGLNIVHVDAENRFLDA---------MAGE---ADPEAKRKIIGHV 314

Query: 129 LLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
            + +  +     + A  LA G      +        +  + +           +      
Sbjct: 315 FVDIFDEESKKCVNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDD 367

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR +  E+GL 
Sbjct: 368 MEMGLVEPLRELFKDEVRKIGLELGLP 394


>gi|154496648|ref|ZP_02035344.1| hypothetical protein BACCAP_00940 [Bacteroides capillosus ATCC
           29799]
 gi|150273900|gb|EDN01000.1| hypothetical protein BACCAP_00940 [Bacteroides capillosus ATCC
           29799]
          Length = 513

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 32/192 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGGVDSSVVAALL    G  +  V     +     K +G         +  +  
Sbjct: 220 KVLLALSGGVDSSVVAALLAEAVGNQLTCVF---VDHGLMRKDEGD--------EVEQAF 268

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-D 139
              +++    D E RF   +                 +     ++        +++GA D
Sbjct: 269 ARWDINFVRVDAESRFLLKLAGVSEPERKRK------IIGEEFIRV--FEEEAKKIGAVD 320

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            LA G        V + G     + +           +          ++  PL  + K+
Sbjct: 321 FLAQG---TIYPDVIESGAGDAAVIKSHHN-------VGGLPDYVDFKEIIEPLRLLFKD 370

Query: 199 SVRDLAREMGLD 210
            VR L RE+GL 
Sbjct: 371 EVRQLGRELGLP 382


>gi|118576754|ref|YP_876497.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum
           symbiosum A]
 gi|118195275|gb|ABK78193.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum
           symbiosum A]
          Length = 264

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 47/206 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA+SGGVDS++VA    R           L +   A        A  ++ DA+RVC 
Sbjct: 16  RVMVALSGGVDSALVAYAAHRA----------LGDGAIAVTADYKTLAQDELADAKRVCS 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H +  Y+E      +   +      +T L             +  +  + G  V+
Sbjct: 66  EIGMQHMLITYDELENADFVRNDSRRCFYCKTELA----------GRMAGLAAEHGVKVI 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G        + D  + R  +    D                   +  PL D   +KE 
Sbjct: 116 VDG------TNLDDLSEYRPGIAAMRDGG-----------------ILSPLADAGFRKED 152

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ 225
           VR  AR  G+ + DK  +   C   +
Sbjct: 153 VRREARLAGISVHDKPSN--SCLASR 176


>gi|120598185|ref|YP_962759.1| GMP synthase [Shewanella sp. W3-18-1]
 gi|146293741|ref|YP_001184165.1| GMP synthase [Shewanella putrefaciens CN-32]
 gi|226739732|sp|A4Y8T3|GUAA_SHEPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739736|sp|A1RHR0|GUAA_SHESW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120558278|gb|ABM24205.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. W3-18-1]
 gi|145565431|gb|ABP76366.1| GMP synthase (glutamine-hydrolyzing) [Shewanella putrefaciens
           CN-32]
          Length = 525

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
           + +A +V     D   ++    D E RF +A   V  P A     G   +          
Sbjct: 267 LNEAAQVMEMFGDHFGLNIIHVDAENRFLDAMKGVADPEAKRKIIGRVFVE--------- 317

Query: 126 FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                  +++   A  LA G      +        +  + +           +       
Sbjct: 318 --IFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDM 368

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 369 ALGLVEPLRELFKDEVRKIGLELGLP 394


>gi|328875337|gb|EGG23702.1| GMP synthetase [Dictyostelium fasciculatum]
          Length = 692

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 50/211 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSCCAGQDVY 74
           +V+V +SGGVDS+V AALL +  G + V+ +      ++ + S+      G       V 
Sbjct: 252 KVLVLVSGGVDSTVCAALLTKAIGAERVVALHIDNGFMRHHESKNVETALGVLGLHLIVV 311

Query: 75  DAR------------RVCDTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCN 121
           DA             +V D + ++ +  +  +   +  +          G  P       
Sbjct: 312 DASQAFFNGTTTIAGKVTDKLCITVHPEEKRKIIGDTFMRVAEDEVRKLGLDPNHVFLAQ 371

Query: 122 RTVKFSDLLSVTRQL--GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            T++  DL+  + +   G   +   H+  + L           + R              
Sbjct: 372 GTLR-PDLIESSSKTVSGVADVIKTHHNDTELV---------RLLRATG----------- 410

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                   +  PL D+ K+ VR+L + +GL 
Sbjct: 411 -------RVVEPLRDLHKDEVRELGKSLGLS 434


>gi|163757570|ref|ZP_02164659.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Hoeflea phototrophica DFL-43]
 gi|162285072|gb|EDQ35354.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Hoeflea phototrophica DFL-43]
          Length = 523

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC- 80
           +V+ A+SGGVDSSV A L+       IG         + S         +    A  V  
Sbjct: 227 KVICALSGGVDSSVAALLIHEA----IG--------DQLSCILVDHGLMRMNEAADVVAM 274

Query: 81  --DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             +  N+S  + D  +RF         S       P         +         +++ G
Sbjct: 275 FREHYNLSLKLVDASDRF--------ISQLEGEADPETKRKTIGRLFIEVFEEEAKKIGG 326

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 327 ADFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMQLVEPLRELFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 380 DEVRVLGRELGLP 392


>gi|156844405|ref|XP_001645265.1| hypothetical protein Kpol_1037p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115925|gb|EDO17407.1| hypothetical protein Kpol_1037p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 420

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+VI   +                  +D   A+ 
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FMAN------------VGQEEDFEAAKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I        D  E+F   ++ P           Y  G +    V     +      
Sbjct: 49  KALKIGATKFVCVDCREQFVEDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V  Q G   ++ G
Sbjct: 103 DVAEQEGCFAVSHG 116


>gi|157376255|ref|YP_001474855.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella sediminis HAW-EB3]
 gi|226739735|sp|A8FY04|GUAA_SHESH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157318629|gb|ABV37727.1| GMP synthase, large subunit [Shewanella sediminis HAW-EB3]
          Length = 525

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +     G  
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLNEADQVMDMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   ++    + E RF +A           GE      +  R +   
Sbjct: 279 -------------DHFGLNIVHVNAENRFLDA---------MKGE---ADPEAKRKIIGH 313

Query: 128 DLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEIFDEESKKCKNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPD 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 DMELGLVEPLRELFKDEVRKIGLELGLP 394


>gi|241760486|ref|ZP_04758579.1| GMP synthase [Neisseria flavescens SK114]
 gi|241318990|gb|EER55492.1| GMP synthase [Neisseria flavescens SK114]
          Length = 521

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D EE+F             AG T     +  R +  ++ + V       + 
Sbjct: 270 NLGVRVIHVDAEEQFLAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 +  +Y            +   ++   +  +    +     L  PL D+ K+ VR
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKDEVR 375

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 376 ELGVALGLP 384


>gi|284799943|ref|ZP_06390439.1| GMP synthase protein [Neisseria subflava NJ9703]
 gi|284796421|gb|EFC51768.1| GMP synthase protein [Neisseria subflava NJ9703]
          Length = 438

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 137 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 186

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D EE+F             AG T     +  R +  ++ + V       + 
Sbjct: 187 NLGVRVIHVDAEEQFLAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 234

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 +  +Y            +   ++   +  +    +     L  PL D+ K+ VR
Sbjct: 235 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKDEVR 292

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 293 ELGVALGLP 301


>gi|154149359|ref|YP_001406321.1| ExsB protein [Campylobacter hominis ATCC BAA-381]
 gi|189038903|sp|A7I1D0|QUEC_CAMHC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|153805368|gb|ABS52375.1| ExsB protein [Campylobacter hominis ATCC BAA-381]
          Length = 220

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 30/204 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +SGG+DSS  A + K  GY+++ +    ++  + + +K   C          +C
Sbjct: 1   MKAVCVISGGMDSSTAAFIAKEQGYEILALH---FDYNQRTMKKERECFNL-------IC 50

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASS---------YAAGETPLPCVDCNRTVKFSDLL 130
           D + V    + D    F   +     +            +GE P   V     +  S   
Sbjct: 51  DDLGVKSREILDVS--FIAQIGANSLTDKNLTIQKTGVKSGEIPNTYVPFRNGIFLSVAA 108

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +   + GAD L  G        V +D       C    +++ +S     T+     +++ 
Sbjct: 109 AFAEKEGADALFIG-------VVEEDSSGYPD-CSENFIKKIESAINAGTSPNFKLEIKI 160

Query: 191 PLGDMKKESVRDLAREMGLDIADK 214
           PL  + K  +   A E+G+ +   
Sbjct: 161 PLVHLSKTQIVKKALEIGVPLEHT 184


>gi|145344203|ref|XP_001416626.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576852|gb|ABO94919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 714

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 36/192 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + V++SGGVDS V+A +LK  GYDV+ + +   N  ++++         D  D       
Sbjct: 256 IAVSLSGGVDSMVLAYILKHQGYDVVTLHIDYKNRPESTEE-------ADFVD------- 301

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVTRQLGADVL 141
                   D+  R               G TP       +R +++        + G   +
Sbjct: 302 --------DWSLRHGMKFERCTVDQIRRGVTPREQYEIESRRIRYGFYKEAGAKHGFPAV 353

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFPLGDMKKE 198
             GH      +          + R  +L       +   + + +     +  P+    K+
Sbjct: 354 LLGH-----HHGDVQENIITNLMRGANLLS-----VNGMSDEGVVEGVRIWRPMLSHVKD 403

Query: 199 SVRDLAREMGLD 210
            V   A   G+ 
Sbjct: 404 DVLTFAHAYGIP 415


>gi|298368617|ref|ZP_06979935.1| GMP synthase (glutamine-hydrolyzing) [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282620|gb|EFI24107.1| GMP synthase (glutamine-hydrolyzing) [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 521

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D EE+F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEEQFMAK---------LAGVT---DPEKKRRIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLQLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|85708990|ref|ZP_01040056.1| argininosuccinate synthase [Erythrobacter sp. NAP1]
 gi|85690524|gb|EAQ30527.1| argininosuccinate synthase [Erythrobacter sp. NAP1]
          Length = 407

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RVV+A SGG+D+SV+A  L    G +V+  T                  G+++  AR  
Sbjct: 5   KRVVLAYSGGLDTSVIAKWLSVERGLEVVTFT-------------ADLGQGEEIEPAREK 51

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQ 135
              + +     ++ D  E F    + P   + A  E          R +    L+ +  +
Sbjct: 52  ARAMGIPDEHIFIEDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLVEIAHE 111

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 112 TGADAIAHG 120


>gi|312065441|ref|XP_003135792.1| hypothetical protein LOAG_00204 [Loa loa]
 gi|307769046|gb|EFO28280.1| hypothetical protein LOAG_00204 [Loa loa]
          Length = 996

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 77/208 (37%), Gaps = 41/208 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSCCAGQD 72
           D +V+V +SGGVDS+V AALL +  G D VI V      ++   S +  +          
Sbjct: 537 DKKVLVMVSGGVDSTVCAALLHKALGSDRVIAVHIDNGFMRTSESDRVVESL-------- 588

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA--AGETPLPCV----DCNRTVKF 126
                   + +N+    ++    F N  I P  +  +     T  P V      +  ++ 
Sbjct: 589 --------NKLNLKVRRYNAFYAFMNGRI-PMENELSTPLMRTVQPEVKRKIIGDTFMRV 639

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQ 182
            D   +  +L  D      ++       D  +    +     D+ +   + S  +     
Sbjct: 640 KD--KIMDELKLDK---DVFLAQGTLRPDLIESASHLASSHADVIKTHHNDSALVRELRD 694

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
             L  +  PL D  K+ VR+L   +GL 
Sbjct: 695 --LGKVLEPLKDFHKDEVRELGISLGLP 720


>gi|299821493|ref|ZP_07053381.1| argininosuccinate synthase [Listeria grayi DSM 20601]
 gi|299817158|gb|EFI84394.1| argininosuccinate synthase [Listeria grayi DSM 20601]
          Length = 404

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L   GYDVI   L         + K      +          
Sbjct: 5   KIVLAYSGGLDTSVAIQWLLESGYDVIACCL------DVGEGKNLDFVKEKALTVGASAS 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 Y  D +E F     +    ++A  E   P +   +R +    L+ V R  GA  
Sbjct: 59  ------YTIDAKEEFAKDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARTEGASA 112

Query: 141 LATG 144
           +A G
Sbjct: 113 IAHG 116


>gi|190575182|ref|YP_001973027.1| argininosuccinate synthase [Stenotrophomonas maltophilia K279a]
 gi|190013104|emb|CAQ46736.1| putative argininosuccinate synthase [Stenotrophomonas maltophilia
           K279a]
          Length = 398

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 39/209 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  VV+A SGG+D+S     L+  GY+V  V          +   G     +D  + R 
Sbjct: 2   SNKDVVLAFSGGLDTSFCVPYLQERGYNVHTVF---------ADTGGVDDEERDFIEKR- 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V SH   +         + PF  +    +   P +  +R +     L    +LG
Sbjct: 52  -AAELGVTSHVTVNGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAAELG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            +++A G                   C  M    DQ  F  A        +  P+ +++K
Sbjct: 111 TNIIAHG-------------------CTGM--GNDQVRFDLAVKALGDYQIIAPIREIQK 149

Query: 198 E--SVR----DLAREMGLDIADKSDSQDI 220
           E    R        E G  +  K  +  I
Sbjct: 150 EHTQTRAYEQKYLEERGFGVRAKQQAYTI 178


>gi|323341584|ref|ZP_08081819.1| GMP synthase [Lactobacillus ruminis ATCC 25644]
 gi|323091000|gb|EFZ33637.1| GMP synthase [Lactobacillus ruminis ATCC 25644]
          Length = 520

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 44/218 (20%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +  ++    + +   D +V++ +SGGVDSSV AALL +  G  +  +          
Sbjct: 207 TMDDFIKMQVEKIKEEVGDKKVILGLSGGVDSSVTAALLNKAIGDQLTCIF--------V 258

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPC 117
                     Q V DA  +   + V+    D  +RF      V  P              
Sbjct: 259 DHGLLRKNEAQQVMDA--LGKGLGVNIIKVDAAKRFLGKLEGVSDP-------------- 302

Query: 118 VDCNRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
            +  R +  ++ + V      +L   D LA G      +  G D  +     +       
Sbjct: 303 -EKKRKIIGAEFIEVFNEEALKLKDVDFLAQGTLYTDVIESGTDTAKT---IKSHHN--- 355

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    +     L  PL  + K+  R+L  ++G+ 
Sbjct: 356 ----VGGLPEDMHFKLIEPLRTLFKDETRELGEKLGIP 389


>gi|167040842|ref|YP_001663827.1| ExsB family protein [Thermoanaerobacter sp. X514]
 gi|300914879|ref|ZP_07132195.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307723887|ref|YP_003903638.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166855082|gb|ABY93491.1| ExsB family protein [Thermoanaerobacter sp. X514]
 gi|300889814|gb|EFK84960.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307580948|gb|ADN54347.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 286

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 48/212 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+     L +  YDV+G      N   A           ++ +A  +   I
Sbjct: 31  LIAFSGGVDST----FLAKVSYDVLG------NRVLAVTATSPMHPKSELKEAVELAKKI 80

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            + H V ++ +             +     P   C  C   + FS   ++  + G   + 
Sbjct: 81  GIPHLVVEFNDILE-------IEEFRK--NPLNRCYICKSNL-FSRFKAIAEEKGFKYIL 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G    +   V D    RR +                    +L  +  PL    +KKE +
Sbjct: 131 EG---TNADDVSDFRPGRRALK-------------------ELG-ILSPLLECGIKKEEI 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           R L++E+GL    K      C   +  Y + +
Sbjct: 168 RILSKELGLPTWGKPSY--ACLASRIPYGEEI 197


>gi|225848894|ref|YP_002729058.1| GMP synthase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643531|gb|ACN98581.1| GMP synthase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 511

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + + A+SGGVDSSV A L+    ++ IG  L          RKG     +  +     
Sbjct: 214 NKKAICALSGGVDSSVAAVLV----HNAIGDNLTCIFVDNGLLRKGEREQVEKTFR---- 265

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-- 137
            D  ++   V D  ERF NA+                 +  N  +         ++L   
Sbjct: 266 -DNFHIPLIVVDARERFLNALKGITDPEQKRK------IIGNLFI--EVFEEEAKKLKDV 316

Query: 138 ---ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                       I S    G     +                +    ++    L  PL +
Sbjct: 317 EFLVQGTLYPDVIESVSVKGPSAVIKTHHN------------VGGLPERMNLKLIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L +E+GL 
Sbjct: 365 LFKDEVRELGKELGLP 380


>gi|160885588|ref|ZP_02066591.1| hypothetical protein BACOVA_03590 [Bacteroides ovatus ATCC 8483]
 gi|156109210|gb|EDO10955.1| hypothetical protein BACOVA_03590 [Bacteroides ovatus ATCC 8483]
          Length = 402

 Score = 60.9 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V        N+   S+ +             
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEV---YAACANTGGFSEEQLKTNEEN------ 54

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +    +   D  + +    +              P    +  + F  L       
Sbjct: 55  --AYKLGATKYVTIDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|315231792|ref|YP_004072228.1| GMP synthase (glutamine-hydrolyzing) [Thermococcus barophilus MP]
 gi|315184820|gb|ADT85005.1| GMP synthase (glutamine-hydrolyzing) [Thermococcus barophilus MP]
          Length = 307

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 37/201 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D + ++A+SGGVDSS  A L  +     IG   +LY     +           
Sbjct: 12  EIREKVGDGKAIIALSGGVDSSTAAILAHKA----IGD--KLYAVFVNTGFLRKGEPEFV 65

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           +   R   D   ++    D +ERF NA   ++ P       G+                 
Sbjct: 66  IKTFR---DEFGLNLIYVDAQERFFNALKGIVDPEQKRKIIGKVF-----------IDVF 111

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             V +++ A+ L  G      +      K                  +    ++    L 
Sbjct: 112 EEVAKEIDAEFLIQGTIAPDWIESKGKIKSHHN--------------VGGLPERLNLKLI 157

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR++A+E+GL 
Sbjct: 158 EPLRDLYKDEVREVAKELGLP 178


>gi|227363964|ref|ZP_03848065.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus reuteri MM2-3]
 gi|325683168|ref|ZP_08162684.1| GMP synthase [Lactobacillus reuteri MM4-1A]
 gi|227071019|gb|EEI09341.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus reuteri MM2-3]
 gi|324977518|gb|EGC14469.1| GMP synthase [Lactobacillus reuteri MM4-1A]
          Length = 538

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A L+ +  G  +  +          
Sbjct: 225 TMDDFIDMQIDEIRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIF--------V 276

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                       V DA  +   + V+    D  +RF              G T     + 
Sbjct: 277 DHGLLRKNEADQVMDA--LSRDLGVNIIKVDAADRFLGK---------LEGVT---DPEQ 322

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++  AD LA G      +  G D  +     +          
Sbjct: 323 KRKIIGKEFIEVFNEEAKKIKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN------ 373

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 374 -VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 407


>gi|257790812|ref|YP_003181418.1| ExsB family protein [Eggerthella lenta DSM 2243]
 gi|257474709|gb|ACV55029.1| ExsB family protein [Eggerthella lenta DSM 2243]
          Length = 210

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 50/198 (25%)

Query: 22  RVVVAMSGGVDSS--VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+ VA SGG DSS  + AAL  R G DV           +A   + +     ++ DA+R+
Sbjct: 24  RLAVAFSGGCDSSFLLAAAL--RAGCDV-----------RAYGVRTAFQPAFEIEDAQRL 70

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +     + D +   +  +             P  C  C   + FS +L+   + G +
Sbjct: 71  AAELGADFELVDADVLAQGEIC---------ANGPDRCYRCKTFI-FSTILARMAEDGFE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
           VLA G        V DD   R       +L                  +  PL    M K
Sbjct: 121 VLADG------TNVTDDPANRPGFQALAELG-----------------VVSPLRRAGMTK 157

Query: 198 ESVRDLAREMGLDIADKS 215
           + VR  +RE+GL  ADK 
Sbjct: 158 DDVRAASRELGLFTADKP 175


>gi|150402519|ref|YP_001329813.1| NAD+ synthetase [Methanococcus maripaludis C7]
 gi|150033549|gb|ABR65662.1| NAD+ synthetase [Methanococcus maripaludis C7]
          Length = 258

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 46/193 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARR 78
           VVV +SGG+DS++VA L  +  G + V GV +  +  N                    + 
Sbjct: 31  VVVGLSGGIDSALVAYLSVKALGKENVFGVIMPEKNSNPDDE-------------KYGKL 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V +++ + + +FD        V+V F A  Y  G+     VD N   +            
Sbjct: 78  VAESLGIDYTIFDITP-----VLVAFGAGGYVEGKEFDKRVDANLKPRIR---------- 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                          V     ++  +       + + Y  + T    L      +G++ K
Sbjct: 123 ------------MTEVYYHANKKNYLVAGT-SNKSEIYMGYGTKYGDLGSDFLTIGNLFK 169

Query: 198 ESVRDLAREMGLD 210
             VR LA  +G+ 
Sbjct: 170 TEVRQLAGYVGVP 182


>gi|124005943|ref|ZP_01690781.1| argininosuccinate synthase [Microscilla marina ATCC 23134]
 gi|123988626|gb|EAY28267.1| argininosuccinate synthase [Microscilla marina ATCC 23134]
          Length = 405

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            + +VV+A SGG+D+S  A  L +  G +V  V          +   G     +    A+
Sbjct: 5   SNNKVVLAFSGGLDTSYCAQYLAQEKGMEVYAV----------AVNTGGFSDEELKQIAQ 54

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
           R  + +N V   V D   ++    +              P       + F  L   + T+
Sbjct: 55  R-AEQLNVVDFKVLDCTNQYYEECVKYLIFGNILRNQTYPLSVSAERM-FQALAVANYTQ 112

Query: 135 QLGADVLATG 144
           +LGA  +A G
Sbjct: 113 ELGAKYVAHG 122


>gi|262306089|gb|ACY45637.1| gln amidotransferase [Peripatus sp. 'Pep']
          Length = 197

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 5   EATRLNSLDLDKNP-KDMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKAS 61
           ++  LN L+  +N  KD +V++ +SGGVDS+V AALL +    + VI V +     RK  
Sbjct: 27  QSRELNCLEYIRNTVKDNKVLMLVSGGVDSTVCAALLHKALKRHQVIAVHIDNGFMRKKE 86

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99
             +                + I +   V +    F NA
Sbjct: 87  SEQVENSL-----------NKIGLKLKVVNASHSFYNA 113


>gi|227544348|ref|ZP_03974397.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri
           CF48-3A]
 gi|300908415|ref|ZP_07125878.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri SD2112]
 gi|227185690|gb|EEI65761.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri
           CF48-3A]
 gi|300893822|gb|EFK87180.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri SD2112]
          Length = 538

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   + +V++ +SGGVDSSV A L+ +  G  +  +          
Sbjct: 225 TMDDFIDMQINEIRKEVGNKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIF--------V 276

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                       V DA  +   + V+    D  +RF              G T     + 
Sbjct: 277 DHGLLRKNEADQVMDA--LSRDLGVNIIKVDAADRFLGK---------LEGVT---DPEQ 322

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++  AD LA G      +  G D  +     +          
Sbjct: 323 KRKIIGKEFIEVFNEEAKKIKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN------ 373

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 374 -VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 407


>gi|223043330|ref|ZP_03613376.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus capitis SK14]
 gi|222443119|gb|EEE49218.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus capitis SK14]
          Length = 513

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + ++RF + +                 V       F D     +   
Sbjct: 269 --GEGFDMNIIRVNAQDRFMDKLKGVSDPEQKRKIIGNEFVYV-----FDD--EAAKLTD 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|329896815|ref|ZP_08271731.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC3088]
 gi|328921570|gb|EGG28950.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC3088]
          Length = 526

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL +  G  +  V                     D   A    
Sbjct: 230 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVF---------VDNGLLRLNEGDQVMAMF-A 279

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + V     D E+ F      V  P A     G   +   D             T+   
Sbjct: 280 QNMGVKVIRADAEDLFLGKLEGVSDPEAKRKIIGNMFIEVFDQ----------EATKLTD 329

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + LA G      +        +  + +           +    +     L  PL ++ K
Sbjct: 330 VNWLAQGTIYPDVIESAGAETGKAHVIKSHHN-------VGGLPEDMKMSLVEPLRELFK 382

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 383 DEVRKIGLELGLP 395


>gi|169334910|ref|ZP_02862103.1| hypothetical protein ANASTE_01316 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257648|gb|EDS71614.1| hypothetical protein ANASTE_01316 [Anaerofustis stercorihominis DSM
           17244]
          Length = 248

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 46/197 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V +A SGGVDSS +  +LK+   +     ++         ++              + 
Sbjct: 11  KKVALAFSGGVDSSYLLYILKKLNIESTAYFVKSEFQPDFELKESIT-----------LA 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +     + D        +I   +S          C  C + + FS ++   +Q G ++
Sbjct: 60  TKLGADLKIIDNPILNEEKIITNDSSR---------CYYCKQNI-FSHIIKTAKQDGYNI 109

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +  G          DD   R  M    ++                  +  PL    + K+
Sbjct: 110 IIDG------TNATDDEGDRPGMKALKEM-----------------KILSPLKICSLTKQ 146

Query: 199 SVRDLAREMGLDIADKS 215
            +R L++E GL   DK 
Sbjct: 147 DIRTLSKEAGLPTWDKP 163


>gi|171463294|ref|YP_001797407.1| GMP synthase, large subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|226739656|sp|B1XTW6|GUAA_POLNS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171192832|gb|ACB43793.1| GMP synthase, large subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 535

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 69/209 (33%), Gaps = 45/209 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
           ++ K   D  V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +    
Sbjct: 223 NIRKQVGDEEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMEMF-- 280

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                           + V     D +E F             AG +     +  R +  
Sbjct: 281 -------------ARNLGVKVIRVDAKETFMGE---------LAGVS---DPEAKRKIIG 315

Query: 127 SDLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + + +        A  LA G      +     GK+     +           +    
Sbjct: 316 KEFVEIFQAESGKIKNAKWLAQGTIYPDVIESAGKGKKGAHTIKSHHN-------VGGLP 368

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     L  PL ++ K+ VR+L   +GL 
Sbjct: 369 EDMHLKLLEPLRELFKDEVRELGVALGLP 397


>gi|314935047|ref|ZP_07842406.1| GMP synthase [Staphylococcus caprae C87]
 gi|313652977|gb|EFS16740.1| GMP synthase [Staphylococcus caprae C87]
          Length = 513

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + ++RF + +                 V       F D     +   
Sbjct: 269 --GEGFDMNIIRVNAQDRFMDKLKGVSDPEQKRKIIGNEFVYV-----FDD--EAAKLTD 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|296111878|ref|YP_003622260.1| argininosuccinate synthase [Leuconostoc kimchii IMSNU 11154]
 gi|295833410|gb|ADG41291.1| argininosuccinate synthase [Leuconostoc kimchii IMSNU 11154]
          Length = 408

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GYD+I V L                 G+D+   +    
Sbjct: 4   KLVLAYSGGLDTSVAIPWLKDKGYDIIAVVL------------NVGQHGKDMEMIQAKAL 51

Query: 82  TINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  S   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A 
Sbjct: 52  QVGASQSIVIDAQAEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENDAV 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AIAHG 116


>gi|315499649|ref|YP_004088452.1| gmp synthase, large subunit [Asticcacaulis excentricus CB 48]
 gi|315417661|gb|ADU14301.1| GMP synthase, large subunit [Asticcacaulis excentricus CB 48]
          Length = 516

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV A L+    G  +  V     ++    K +G               
Sbjct: 220 RVICGLSGGVDSSVAAVLIHEAIGEQLTCVF---VDTGLLRKNEGEQVVSLFR------- 269

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLG 137
           D  N+       +++F  A+             G   +          F +     +  G
Sbjct: 270 DHYNIPLIHVQAQDKFLGALKGLSDPEQKRKTIGRLFIEV--------FDE--EAAKIDG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +           + +           +          L  PL ++ K
Sbjct: 320 AEFLAQGTLYPDVVESVSPHGGPSTVIKSHHN-------VGGLPDYMKLKLVEPLRELFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 373 DEVRALGRELGLS 385


>gi|227509854|ref|ZP_03939903.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190778|gb|EEI70845.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 538

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 46/219 (21%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRK 59
            +++   L    + +   D +V++ +SGGVDSSVV  LL +     IG  +T    +   
Sbjct: 225 TMNDFIDLQIQHIRETVGDKKVLLGLSGGVDSSVVGVLLHKA----IGSQLTSIFVDHGL 280

Query: 60  ASKRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERF---RNAVIVPFASSYAAGE 112
             K +           A++V D++     ++    D +ERF      V  P         
Sbjct: 281 LRKNE-----------AQQVMDSLVGKFGLNIIKVDAQERFLSKLEGVTDP--------- 320

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
                +  N  ++        R+L G D LA G      +  G D  +     +      
Sbjct: 321 EKKRKIIGNEFIQV--FNDEARKLDGIDFLAQGTLYTDVVESGTDTAQT---IKSHHN-- 373

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +    +     L  PL  + K+  R++  ++G+ 
Sbjct: 374 -----VGGLPKDMKFKLIEPLNKLFKDEAREIGEKLGMP 407


>gi|330718567|ref|ZP_08313167.1| GMP synthase [Leuconostoc fallax KCTC 3537]
          Length = 516

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA--R 77
           D +V++ +SGGVDSSVV  LL+R     IG        +  S         ++  DA   
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLQRA----IG-------DQLTSIFVDHGLLRKNEADAVME 269

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +     ++    D +ERF      V  P              +  N  ++        +
Sbjct: 270 SLGGKFGLNIIKVDAQERFLTKLSGVTDP---------EKKRKIIGNEFIQV--FNDEAQ 318

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G      +  G D  +     +           +    +     L  PL 
Sbjct: 319 KLDGIDYLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMHFKLIEPLN 368

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR+L   +G+ 
Sbjct: 369 KLFKDEVRELGEALGMP 385


>gi|260575041|ref|ZP_05843042.1| GMP synthase, large subunit [Rhodobacter sp. SW2]
 gi|259022663|gb|EEW25958.1| GMP synthase, large subunit [Rhodobacter sp. SW2]
          Length = 518

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 75/239 (31%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             RV+ A+SGGVDSSV A L+    G  +  V      ++L  S +              
Sbjct: 220 KGRVICALSGGVDSSVAAILIHEAIGDQLTCVYVDHGLMRLNESEQVVSMFR-------- 271

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +  N+     D    F            +  ET        R +     + V 
Sbjct: 272 -------EHYNLPLIHADESALFLGK-----LEGVSDPETK-------RKIIGGLFIEVF 312

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +      GA+ LA G      +          +  +           +     +    L
Sbjct: 313 EKHAKAIGGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPARMNMQL 365

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 366 VEPLRELFKDEVRALGRELGLPQS---------FIGRHPF------PGPGLAIRCPGEI 409


>gi|332157834|ref|YP_004423113.1| hypothetical protein PNA2_0192 [Pyrococcus sp. NA2]
 gi|331033297|gb|AEC51109.1| hypothetical protein PNA2_0192 [Pyrococcus sp. NA2]
          Length = 260

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 23/132 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V  SGG DSS+   LLKR G DV  +T                   + V    R   
Sbjct: 22  KILVLFSGGKDSSLTLYLLKRAGLDVAALTF-----------FHRWSWPEVVKWGMRFTK 70

Query: 82  TINVSHYVFDYEE-RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            + V HY+ D  E   + AV          G     C+ C + + ++         G  +
Sbjct: 71  ELGVEHYLVDITESLLKKAV----------GRKGPICIHCKKVMLWNAKW-FALNNGFSI 119

Query: 141 LATGHYIRSRLY 152
           LA G     ++ 
Sbjct: 120 LAKGDNANDKIV 131


>gi|255535292|ref|YP_003095663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341488|gb|ACU07601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 178

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGP---RESLEVHRI- 303
           +G ++G H G   + +GQR+ +GV     PL+V+ +D   +RV VG       L    + 
Sbjct: 43  DGFLVGEHRGTSTFQLGQRKRIGVGGKSAPLYVIGIDDAENRVFVGHGDDHPGLLSKVLC 102

Query: 304 -YLREINWLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSE 356
               + + + +  F   + +            S        +      ++++F+K  
Sbjct: 103 FKASQFHLVQNPSFNQNLSEEATPVDVVF---SDGKRAEANIYCFGSELFLEFKKPV 156


>gi|257051513|ref|YP_003129346.1| GMP synthase subunit B [Halorhabdus utahensis DSM 12940]
 gi|256690276|gb|ACV10613.1| GMP synthase, large subunit [Halorhabdus utahensis DSM 12940]
          Length = 305

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 38/201 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++D    D + V+A+SGGVDSS  AAL     YD IG  L          RKG     ++
Sbjct: 14  EIDAQIGDSKAVIALSGGVDSSTAAALA----YDAIGDQLTPVYVDTGLMRKGETEQIRE 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D          S  + D  +RF +    V  P    +A GE               + 
Sbjct: 70  TFDYMD-------SLRIVDATDRFLDELEGVTDPEEKRHAIGEQF-----------IREF 111

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            +V R++ AD L  G     R+      K    +    D+                  + 
Sbjct: 112 ETVAREVDADYLVQGTIYPDRIESEGTIKSHHNVGGLPDVV-------------DFDGIV 158

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            P+ D+ K+ VR++ARE+ L+
Sbjct: 159 EPMRDLYKDEVREVARELDLE 179


>gi|294086052|ref|YP_003552812.1| GMP synthase - glutamine amidotransferase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665627|gb|ADE40728.1| GMP synthase - glutamine amidotransferase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 515

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 69/216 (31%), Gaps = 37/216 (17%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           M    A  ++++   K   D +V+  +SGGVDSSV A L+    G  +  V         
Sbjct: 200 MAAYRARAIDAI--RKQVGDAKVICGLSGGVDSSVTAVLIHEAIGDQLTCVF-------- 249

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                G    G+     R      N+     D  E F                + +   +
Sbjct: 250 --VDHGLLRKGEAEEVVRLFGGHYNIPLIHRDVSEMFLER------------LSGVSDPE 295

Query: 120 CNRTVKFSDLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R +     + V  +      GA  LA G      +          +  +         
Sbjct: 296 QKRKIIGGSFIEVFDEEAQKIDGARFLAQGTLYPDVIESISAAGGSDVTIKSHHN----- 350

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +         DL  PL ++ K+ VR+L RE+GL 
Sbjct: 351 --VGGLPDDMKLDLVEPLRELFKDEVRNLGRELGLP 384


>gi|291518162|emb|CBK73383.1| NAD+ synthetase [Butyrivibrio fibrisolvens 16/4]
          Length = 249

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            +K   + R V+ +SGG DSSV AA+LK   G D V+G+ +                   
Sbjct: 21  FNKFGDNSRAVIGISGGKDSSVTAAVLKEALGADRVVGIIMPN-------------GEMS 67

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAV 100
           D+ DA+ + D + + + +    + +  A+
Sbjct: 68  DLDDAKLLVDFLGIPNEIVPITDYYNAAI 96


>gi|218663753|ref|ZP_03519683.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli IE4771]
          Length = 348

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D RV+ A+SGGVDSSV A L+       +G         + +         + 
Sbjct: 43  EIRKQVGDKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRK 90

Query: 73  VYDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              A  V    +  N+     D  +RF                 P         +     
Sbjct: 91  DEAANVVAMFREHYNLHLLHVDASDRF--------IGELEGVSDPETKRKIIGRLFIETF 142

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L GAD L  G      +          +  +           +    ++    L
Sbjct: 143 EEEAKKLGGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQL 195

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 196 VEPLRELFKDEVRALGRELGLP 217


>gi|126737665|ref|ZP_01753395.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter sp. SK209-2-6]
 gi|126721058|gb|EBA17762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter sp. SK209-2-6]
          Length = 527

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V     +     K +    A + V   R 
Sbjct: 229 DKQVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGLLRKNE----AEEVVAMFR- 280

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D  + F                 P       R +     + V ++   
Sbjct: 281 --DNYNIKLIHADESDLF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAD 326

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 327 TIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 379

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 380 ELFKDEVRALGRELGLPQS---------FIGRHPF------PGPGLAIRCPGEI 418


>gi|315231454|ref|YP_004071890.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP]
 gi|315184482|gb|ADT84667.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP]
          Length = 274

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 23/136 (16%)

Query: 13  DLDKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L++  KD  + +VA SGG DS+V   L K   Y V           +A        AG+
Sbjct: 44  ELEELMKDVDKAIVAFSGGKDSTVALYLAKEV-YKV--------PELEAVMIDHGFMAGE 94

Query: 72  DVYDARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            + +A+R+ + +NV   +   DY + FR A    F  + +      PC  C++      L
Sbjct: 95  AIENAKRIAEYLNVQFTILRYDYSDIFREA----FLKAQS------PCRRCSKRT-MEKL 143

Query: 130 LSVTRQLGADVLATGH 145
                + G   + TGH
Sbjct: 144 RRYALKKGVKYIITGH 159


>gi|257067189|ref|YP_003153445.1| PP-loop domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256799069|gb|ACV29724.1| PP-loop domain protein [Anaerococcus prevotii DSM 20548]
          Length = 285

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 62/254 (24%)

Query: 12  LDLDKNPKDM-----------RVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNS 57
           +D+DK  K+            + V+A SGGVDSS+   +A++ + +  DV+ + +   N+
Sbjct: 1   MDIDKEKKEKLDNIVKDLLKEKFVLAFSGGVDSSLILKLASMYREEKNDVVAI-MYNTNT 59

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                         D+ +++ +   ++V   V D         I  F + Y    T   C
Sbjct: 60  TPDG----------DLENSQNLACEMDVDLKVVD---------IDVFDNEYIKHNTIDRC 100

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C   + F +   +   LG   +  G  +       +D K  R   R ++         
Sbjct: 101 YHCKSFL-FEEAFKLKDALGYKYVVDGSNL-------EDYKVFRPGVRALND-------- 144

Query: 178 FATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
                     +  PL +    K+ VR  A+E+ L +  +  +   C   +  Y +++ + 
Sbjct: 145 --------KGVVSPLKEAGFTKDMVRAYAKELNLSVYKRPSAP--CLATRFPYNELIDKD 194

Query: 236 NAGIALEGDIVHLN 249
                 + +I   +
Sbjct: 195 KFEAINKAEIYLKD 208


>gi|251811289|ref|ZP_04825762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805156|gb|EES57813.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 515

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ AMSGGVDSSVVA LL +  G  +  +     +     K +G     Q       
Sbjct: 220 NRKVLCAMSGGVDSSVVAVLLHKAIGEQLTCIF---VDHGLLRKGEGDMVMEQF------ 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +  +++    + +ERF + +                 V       F D     +    
Sbjct: 271 -GEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYV-----FDD--EAAKLTDV 322

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G        V + G +     +           +    +    +L  P+  + K+
Sbjct: 323 DFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFKD 372

Query: 199 SVRDLAREMGLD 210
            VR L  E+G+ 
Sbjct: 373 EVRALGIELGIP 384


>gi|15964067|ref|NP_384420.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sinorhizobium meliloti 1021]
 gi|307301211|ref|ZP_07580973.1| GMP synthase, large subunit [Sinorhizobium meliloti BL225C]
 gi|307321113|ref|ZP_07600518.1| GMP synthase, large subunit [Sinorhizobium meliloti AK83]
 gi|24211760|sp|Q92SQ3|GUAA_RHIME RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|15073243|emb|CAC41751.1| Probable GMP synthase glutamine-hydrolyzing protein [Sinorhizobium
           meliloti 1021]
 gi|306893285|gb|EFN24066.1| GMP synthase, large subunit [Sinorhizobium meliloti AK83]
 gi|306903667|gb|EFN34254.1| GMP synthase, large subunit [Sinorhizobium meliloti BL225C]
          Length = 520

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 67/204 (32%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   D +V+ A+SGGVDSSV A L+       +G         + +         +  
Sbjct: 216 IRKQVGDKKVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKD 263

Query: 74  YDARRVC---DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
             A  V    +  N+     D  +RF      V  P       G   +            
Sbjct: 264 EAANVVAMFKEHYNLHLLHIDASDRFIGELEGVSDPETKRKIIGRLFIEV---------- 313

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 ++LG AD LA G      +          +  +           +    ++   
Sbjct: 314 -FEEEAKKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNM 365

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR L RE+GL 
Sbjct: 366 QLVEPLRELFKDEVRVLGRELGLP 389


>gi|227512790|ref|ZP_03942839.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus buchneri ATCC 11577]
 gi|227522914|ref|ZP_03952963.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus hilgardii ATCC 8290]
 gi|227083990|gb|EEI19302.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus buchneri ATCC 11577]
 gi|227089943|gb|EEI25255.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus hilgardii ATCC 8290]
          Length = 538

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 46/219 (21%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRK 59
            +++   L    + +   D +V++ +SGGVDSSVV  LL +     IG  +T    +   
Sbjct: 225 TMNDFIDLQIQHIRETVGDKKVLLGLSGGVDSSVVGVLLHKA----IGSQLTSIFVDHGL 280

Query: 60  ASKRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERF---RNAVIVPFASSYAAGE 112
             K +           A++V D++     ++    D +ERF      V  P         
Sbjct: 281 LRKNE-----------AQQVMDSLVGKFGLNIIKVDAQERFLSKLEGVTDP--------- 320

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
                +  N  ++        R+L G D LA G      +  G D  +     +      
Sbjct: 321 EKKRKIIGNEFIQV--FNDEARKLDGIDFLAQGTLYTDVVESGTDTAQT---IKSHHN-- 373

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +    +     L  PL  + K+  R++  ++G+ 
Sbjct: 374 -----VGGLPKDMKFKLIEPLNKLFKDEAREIGEKLGMP 407


>gi|326204361|ref|ZP_08194219.1| GMP synthase, large subunit [Clostridium papyrosolvens DSM 2782]
 gi|325985393|gb|EGD46231.1| GMP synthase, large subunit [Clostridium papyrosolvens DSM 2782]
          Length = 511

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 31/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  +     +     K +G             
Sbjct: 215 DKKVLCALSGGVDSSVAAVLIHKAVGKQLTCIF---VDHGLLRKHEGDQVEQIFR----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + E+RF + +                 +     ++        +++G 
Sbjct: 267 --KQYDINLVRVNCEDRFLDRLKDVSDPETKRK------IIGEEFIRV--FEDEAKKIGK 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G        V + G     + +           +          ++  PL ++ 
Sbjct: 317 VDFLVQG---TIYPDVIESGLGDAAVIKSHHN-------VGGLPDHVDFKEIIEPLRNLF 366

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+ + 
Sbjct: 367 KDEVRKAGEELDIP 380


>gi|72391078|ref|XP_845833.1| GMP synthase [Trypanosoma brucei TREU927]
 gi|62176460|gb|AAX70568.1| GMP synthase, putative [Trypanosoma brucei]
 gi|70802369|gb|AAZ12274.1| GMP synthase, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 658

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 36/216 (16%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++  +  +V+   SGGVDS+V A LL +  G + V+ +      ++L  S++        
Sbjct: 217 ERTTQGQKVLCLASGGVDSTVCAVLLLKALGPERVVCIHIDHGFMRLNESQEVVA----- 271

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVK- 125
                   A R      V+  + D  ++F  A    P      A +T   C   +   K 
Sbjct: 272 --------ALRAA---GVNVTLIDATKQFSEATTEFPAKRGKGAYQTGKLCEAIDPEEKR 320

Query: 126 ------FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYF 176
                 F  +     +     +      +  L             +  D  +   + +  
Sbjct: 321 VIIGNTFMSVCDAAVKDLNLDVNNLLLAQGTLRPDLIESGSAYASKVADAIKTHHNDTAV 380

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
           +     +    +  PL D  K+ VR+L   +G+   
Sbjct: 381 VRQLRAE--GRIIEPLCDYHKDEVRELGTRLGIPTH 414


>gi|148255024|ref|YP_001239609.1| GMP synthase [Bradyrhizobium sp. BTAi1]
 gi|146407197|gb|ABQ35703.1| GMP synthase (glutamine-hydrolyzing) [Bradyrhizobium sp. BTAi1]
          Length = 534

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+  +SGGVDS+V A L+    G  +  V                      + +A  
Sbjct: 236 KGKVICGLSGGVDSAVAAVLIHEAIGDQLTCVF--------------VDHGLLRLNEAET 281

Query: 79  VCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           V D      N+     D  + F             AG T     +  R       + V  
Sbjct: 282 VVDLFRHHYNIPLVHVDASKLFLGE---------LAGVT---DPEQKRKTIGRLFIDVFE 329

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +++ GAD LA G      +          +  +           +     +    L 
Sbjct: 330 AEAKKIGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPARMNMKLV 382

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L RE+GL 
Sbjct: 383 EPLRELFKDEVRVLGRELGLP 403


>gi|302392994|ref|YP_003828814.1| NAD+ synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302205071|gb|ADL13749.1| NAD+ synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 259

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 47/211 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSSVVA L+K              ++             +D   A+ V D  
Sbjct: 23  ILGLSGGVDSSVVAGLIKEA----------FGDNTLGVLLPTDGSIDKDTEYAKLVADEF 72

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD----------LLSVT 133
           N+     +  E +   V     S     E     V      K             +    
Sbjct: 73  NLETVTVNLGEVY--DVFEGKLSEADVEE---ADVSHWPQTKLDASGTGNRAGDNMKPRL 127

Query: 134 RQLGADVLA--TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           R +    LA    + +       +            D   D                  P
Sbjct: 128 RMVSLHYLAEKMNYVVMGTSNKSEVITGYYTNN--GDNATD----------------LRP 169

Query: 192 LGDMKKESVRDLAREMGLD--IADKSDSQDI 220
           LGD+ K  V +LARE+G+   I ++  S  +
Sbjct: 170 LGDLLKTEVWELAREVGVPEEIIERPPSAGL 200


>gi|152991082|ref|YP_001356804.1| GMP synthase [Nitratiruptor sp. SB155-2]
 gi|226739649|sp|A6Q4N8|GUAA_NITSB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|151422943|dbj|BAF70447.1| GMP synthase (glutamine-hydrolyzing) [Nitratiruptor sp. SB155-2]
          Length = 516

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 68/210 (32%), Gaps = 50/210 (23%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG-----VTLQLYNSRKASKRKGSCC 68
           + +   + +V+ A+SGGVDSSVV ALL    Y+ IG     V +     R+  + K    
Sbjct: 213 IRQRVGEDKVLCALSGGVDSSVVTALL----YEAIGDKLIPVFVDNGLLREGEREKVEYV 268

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVK 125
                         + V   V D +ERF NA+             G T +          
Sbjct: 269 FKNM----------LKVPLIVVDAKERFLNALQGITDPEQKRKIIGHTFIEV-------- 310

Query: 126 FSDLLSVTRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                   ++      LA        I S    G     +                +   
Sbjct: 311 ---FEEEAKKHTDVKYLAQGTLYPDVIESVSVKGPSETIKSHHN------------VGGL 355

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 +L  PL ++ K+ VR L  E+GL 
Sbjct: 356 PDWMKFELIEPLRELFKDEVRKLGLELGLP 385


>gi|27469265|ref|NP_765902.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|38372353|sp|Q8CMQ8|GUAA_STAES RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|27316815|gb|AAO05990.1|AE016752_23 GMP synthase [Staphylococcus epidermidis ATCC 12228]
          Length = 513

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ AMSGGVDSSVVA LL +  G  +  +     +     K +G     Q       
Sbjct: 218 NRKVLCAMSGGVDSSVVAVLLHKAIGEQLTCIF---VDHGLLRKGEGDMVMEQF------ 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +  +++    + +ERF + +                 V       F D     +    
Sbjct: 269 -GEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYV-----FDD--EAAKLTDV 320

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G        V + G +     +           +    +    +L  P+  + K+
Sbjct: 321 DFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFKD 370

Query: 199 SVRDLAREMGLD 210
            VR L  E+G+ 
Sbjct: 371 EVRALGIELGIP 382


>gi|261329284|emb|CBH12265.1| GMP synthase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 658

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 36/216 (16%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++  +  +V+   SGGVDS+V A LL +  G + V+ +      ++L  S++        
Sbjct: 217 ERTTQGQKVLCLASGGVDSTVCAVLLLKALGPERVVCIHIDHGFMRLNESQEVVA----- 271

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVK- 125
                   A R      V+  + D  ++F  A    P      A +T   C   +   K 
Sbjct: 272 --------ALRAA---GVNVTLIDATKQFSEATTEFPAKRGKGAYQTGKLCEAIDPEEKR 320

Query: 126 ------FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYF 176
                 F  +     +     +      +  L             +  D  +   + +  
Sbjct: 321 VIIGNTFMSVCDAAVKDLNLDVNNLLLAQGTLRPDLIESGSAYASKVADAIKTHHNDTAV 380

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
           +     +    +  PL D  K+ VR+L   +G+   
Sbjct: 381 VRQLRAE--GRIIEPLCDYHKDEVRELGTRLGIPTH 414


>gi|189468120|ref|ZP_03016905.1| hypothetical protein BACINT_04514 [Bacteroides intestinalis DSM
           17393]
 gi|189436384|gb|EDV05369.1| hypothetical protein BACINT_04514 [Bacteroides intestinalis DSM
           17393]
          Length = 435

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++A+SGGVDSSVVAALL +  G +++ V      ++   S    +  G        
Sbjct: 140 NRKVLLALSGGVDSSVVAALLLKAIGDNLVCVHVNHGLMRKGESEDVVEMFG-------- 191

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + +  +    D  ERF               E     +     ++        
Sbjct: 192 -------NQLKANLIYVDATERFLTK-----LEGVEDPEQK-RKIIGGEFIRV--FEEEA 236

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R+L G D L  G        + + G +   M +           +    +    +L  PL
Sbjct: 237 RKLDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPL 286

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+GL 
Sbjct: 287 RQLFKDEVRACGVELGLP 304


>gi|153005132|ref|YP_001379457.1| hypothetical protein Anae109_2271 [Anaeromyxobacter sp. Fw109-5]
 gi|152028705|gb|ABS26473.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 284

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 67/211 (31%), Gaps = 51/211 (24%)

Query: 23  VVVAMSGGVDSS--VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+VA SGGVDS+  V  A      ++V+G       +   +    S    +   +AR + 
Sbjct: 30  VLVAFSGGVDSTFVVAVA------HEVLGA-----RAVALTAHSPSVPHAER-EEARALA 77

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I V H   +  E+     +   +           C  C R + F       R  G  V
Sbjct: 78  ARIGVRHLERESHEQDDPGYVANASDR---------CYYCKREL-FRLCEETARAEGLAV 127

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +  G          DD    R   R                  Q   +R PL   ++ K+
Sbjct: 128 VLDGFNA-------DDLGDHRPGHRA----------------AQERRVRSPLAEAELSKD 164

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
            VR  +   GL    K   Q  C   +  Y 
Sbjct: 165 EVRAWSEAYGLPTWAKP--QMACLASRIPYG 193


>gi|300311521|ref|YP_003775613.1| GMP synthase [Herbaspirillum seropedicae SmR1]
 gi|124483428|emb|CAM32587.1| GMP synthase protein [Herbaspirillum seropedicae]
 gi|300074306|gb|ADJ63705.1| GMP synthase protein [Herbaspirillum seropedicae SmR1]
          Length = 530

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +   +              
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMF------------ 276

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                 + V     D   +F           + AG T     +  R +   + + V    
Sbjct: 277 ---AKNLGVKVIHVDATAQFM---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 321

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +   A  LA G      +     GK+     +           +    +     L  P
Sbjct: 322 SAKLTSAKWLAQGTIYPDVIESAGKGKKTAHTIKSHHN-------VGGLPETLNLKLLEP 374

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +GL 
Sbjct: 375 LRELFKDEVRELGVALGLP 393


>gi|54297636|ref|YP_124005.1| GMP synthase [Legionella pneumophila str. Paris]
 gi|81370447|sp|Q5X4I9|GUAA_LEGPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|53751421|emb|CAH12839.1| hypothetical protein lpp1687 [Legionella pneumophila str. Paris]
          Length = 525

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL R  G  ++ V      L+L  + +     G          
Sbjct: 228 KVLLGLSGGVDSSVVAALLHRAIGEQLVCVFVDTGLLRLNEAEQVLSMFG---------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSV 132
                  + +     + E++F  A+             G T +                 
Sbjct: 278 -----RHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEV-----------FDEE 321

Query: 133 TRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++L     LA G  Y               ++ +           +          L  
Sbjct: 322 AQKLTDIKWLAQGTIYPDVIESAATSTNDAAVVIKSHHN-------VGGLPDTLNLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+ ++ K+ VR +  E+GL 
Sbjct: 375 PIRELFKDEVRHVGLELGLP 394


>gi|150015222|ref|YP_001307476.1| GMP synthase [Clostridium beijerinckii NCIMB 8052]
 gi|259647752|sp|A6LQ90|GUAA_CLOB8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149901687|gb|ABR32520.1| GMP synthase, large subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 510

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 48/202 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G+++  +     +     K +G            R
Sbjct: 215 DKKVLCALSGGVDSSVAAMIVHKAIGHNLTCIF---VDHGLLRKDEGDT--------VER 263

Query: 79  VCDTINVSHYVFDYEERF-----RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDL 129
           V            +++ F     R  V   F    A    P       R +         
Sbjct: 264 V------------FKKEFDMNIKRVNVADRFLGKLAGVSDPE----TKRKIIGEEFIRVF 307

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +++G  D L  G        + + G +     +           +    +    +L
Sbjct: 308 EEEAKKVGQIDYLVQG---TIYPDIVESGTKTSATIKSHHN-------VGGLPEDMQFEL 357

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+G+ 
Sbjct: 358 IEPLRELFKDEVRAVGEELGIP 379


>gi|148544824|ref|YP_001272194.1| GMP synthase [Lactobacillus reuteri DSM 20016]
 gi|184154165|ref|YP_001842506.1| GMP synthase [Lactobacillus reuteri JCM 1112]
 gi|254800103|sp|A5VLY3|GUAA_LACRD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800104|sp|B2G994|GUAA_LACRJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148531858|gb|ABQ83857.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri DSM
           20016]
 gi|183225509|dbj|BAG26026.1| GMP synthase [Lactobacillus reuteri JCM 1112]
          Length = 517

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A L+ +  G  +  +          
Sbjct: 204 TMDDFIDMQIDEIRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIF--------V 255

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                       V DA  +   + V+    D  +RF              G T     + 
Sbjct: 256 DHGLLRKNEADQVMDA--LSRDLGVNIIKVDAADRFLGK---------LEGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++  AD LA G      +  G D  +     +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKIKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 353 -VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 386


>gi|327191998|gb|EGE58979.1| GMP synthase (glutamine-hydrolyzing) protein [Rhizobium etli
           CNPAF512]
          Length = 520

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D RV+ A+SGGVDSSV A L+       +G         + +         + 
Sbjct: 215 EIRKQVGDKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRK 262

Query: 73  VYDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              A  V    +  N+     D  +RF                 P         +     
Sbjct: 263 DEAANVVAMFREHYNLHLLHVDASDRF--------IGELEGVSDPETKRKIIGRLFIETF 314

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L GAD L  G      +          +  +           +    ++    L
Sbjct: 315 EEEAKRLGGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 368 VEPLRELFKDEVRALGRELGLP 389


>gi|253564120|ref|ZP_04841577.1| argininosuccinate synthase [Bacteroides sp. 3_2_5]
 gi|251947896|gb|EES88178.1| argininosuccinate synthase [Bacteroides sp. 3_2_5]
 gi|301161583|emb|CBW21123.1| putative argininosuccinate synthase [Bacteroides fragilis 638R]
          Length = 401

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   QKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L      +
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYEKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYAK 110

Query: 135 QLGADVLATG 144
           ++GA+ +A G
Sbjct: 111 EIGAEAIAHG 120


>gi|60680054|ref|YP_210198.1| putative argininosuccinate synthase [Bacteroides fragilis NCTC
           9343]
 gi|60491488|emb|CAH06240.1| putative argininosuccinate synthase [Bacteroides fragilis NCTC
           9343]
          Length = 401

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   QKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L      +
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYEKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYAK 110

Query: 135 QLGADVLATG 144
           ++GA+ +A G
Sbjct: 111 EIGAEAIAHG 120


>gi|309776979|ref|ZP_07671949.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915390|gb|EFP61160.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 430

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +  V +  +   +  + +      Q+  DA  
Sbjct: 135 DRKVLLALSGGVDSSVVAALLLKAIGKQLYCVHV-NHGLMRKGESESVIEVFQNQMDA-- 191

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
                  +    D  ERF   +                 +     ++        R+L G
Sbjct: 192 -------NLIYVDASERFLGKLKDVAEPEQKRK------IIGAEFIRV--FEEEARKLEG 236

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G +   + +           +         +L  PL  + K
Sbjct: 237 IDFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLPDDLAFELVEPLRQLFK 286

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 287 DEVRACGLELGLP 299


>gi|282895929|ref|ZP_06303969.1| Glutamine amidotransferase, class-I [Raphidiopsis brookii D9]
 gi|281199174|gb|EFA74043.1| Glutamine amidotransferase, class-I [Raphidiopsis brookii D9]
          Length = 540

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++     D RV++A+SGGVDSS +A LL +  G  +  V +      +   RK       
Sbjct: 229 EIRAKVSDRRVLLALSGGVDSSTLAFLLHKAIGDQLTCVFI-----DQGFMRKLEPERLL 283

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++      +  ++     +  +RF NA+                    +  ++      
Sbjct: 284 KLFQ-----EQFHIPVEYVNARDRFINAIAGVTDPEEKRRR------IGHEFIRV--FEE 330

Query: 132 VTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            +++LG  D LA G  Y       G +   +      + ++   +  +    +     L 
Sbjct: 331 TSKRLGHFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLRFKLV 388

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR + R +GL 
Sbjct: 389 EPLRKLFKDEVRKVGRSLGLP 409


>gi|160915129|ref|ZP_02077342.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991]
 gi|158432928|gb|EDP11217.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991]
          Length = 319

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 26/142 (18%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSV---VAAL---LKRDGYDVIGVTLQLYNSRKASKRKG 65
           +D D      R+ V +SGG DS V      +    K   + V+G+ ++L           
Sbjct: 15  IDYDLIADGDRIAVGVSGGKDSMVLLSALHMYSKFKGKNFQVVGIHIKL----------- 63

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                 D  +    C+ + +  ++ D  + +           +      + C  C++  K
Sbjct: 64  -GFPNMDFREVVSYCEQLGIEFHIID-SKVYE------ILQKHPDANGNIKCSLCSKFKK 115

Query: 126 FSDLLSVTRQLGADVLATGHYI 147
            + ++   +Q     +A GH+ 
Sbjct: 116 -ATVIEAAKQFNCHKVAFGHHS 136


>gi|319427115|gb|ADV55189.1| GMP synthase, large subunit [Shewanella putrefaciens 200]
          Length = 525

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGTKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
           + +A +V     D   ++    D E RF +A   V  P A     G   +          
Sbjct: 267 LNEAAQVMEMFGDHFGLNIIHVDAENRFLDAMKGVADPEAKRKIIGRVFVE--------- 317

Query: 126 FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                  +++   A  LA G      +        +  + +           +       
Sbjct: 318 --IFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDM 368

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 369 ELGLVEPLRELFKDEVRKIGLELGLP 394


>gi|298674040|ref|YP_003725790.1| NAD+ synthetase [Methanohalobium evestigatum Z-7303]
 gi|298287028|gb|ADI72994.1| NAD+ synthetase [Methanohalobium evestigatum Z-7303]
          Length = 263

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 46/193 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V A L     G + V+G+ L           +    + +D  D+  + 
Sbjct: 26  VVIGLSGGIDSAVTANLAVEALGSENVLGIHL----------PEEGVTSTKDSKDSEIIA 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSY--AAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +++ ++    D        ++  F S     +GE P    +    ++   L         
Sbjct: 76  NSLGINFKNIDIS-----RILNCFISEIPDESGEKPPVVGNLKSRIRMCLLYYYANSFYK 130

Query: 139 DVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            V+ TG+     L Y    G     +                           P+GD+ K
Sbjct: 131 MVVGTGNKSEIMLGYFTKYGDGGVDLE--------------------------PIGDLYK 164

Query: 198 ESVRDLAREMGLD 210
             V +LA+ + + 
Sbjct: 165 TEVFELAKLLSIP 177


>gi|260598891|ref|YP_003211462.1| GMP synthase [Cronobacter turicensis z3032]
 gi|260218068|emb|CBA32807.1| GMP synthase [glutamine-hydrolyzing] [Cronobacter turicensis z3032]
          Length = 525

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 NDRVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +       A    F  + A  + P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAEA---RFLDALAGIDEPEAKRKTIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|149908785|ref|ZP_01897445.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Moritella sp. PE36]
 gi|149808059|gb|EDM68000.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Moritella sp. PE36]
          Length = 526

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           +     D  V++ +SGGVDSSVVA LL+R  G  +  V      L+L   ++     G  
Sbjct: 222 MKAQIGDDEVILGLSGGVDSSVVAMLLQRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-- 279

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   +       E+RF +           AGE+     +  R +   
Sbjct: 280 -------------DRFGLKIVHVKAEDRFLDQ---------MAGES---DPEAKRKIIGR 314

Query: 128 DLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 315 VFVEIFDEESKKLTNAKWLAQGTIYPDVIESAATKNGKAHVIKSHHN-------VGGLPD 367

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 368 DMEMGLIEPLRELFKDEVRKIGLELGLP 395


>gi|167037943|ref|YP_001665521.1| ExsB family protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751779|ref|ZP_05492652.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116360|ref|YP_004186519.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856777|gb|ABY95185.1| ExsB family protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749307|gb|EEU62338.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929451|gb|ADV80136.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 286

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 74/212 (34%), Gaps = 48/212 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+     L +  YDV+G      N   A           ++ +A  +   I
Sbjct: 31  LIAFSGGVDST----FLAKVSYDVLG------NRVLAVTATSPMHPKSELKEAVELAKKI 80

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            + H V ++ +             +     P   C  C   + FS   ++  + G   + 
Sbjct: 81  GIPHLVVEFNDILE-------IEEFRK--NPLNRCYICKSNL-FSRFKAIAEEKGFKYIL 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G    +   V D    RR +                    +L  +  PL    +KKE +
Sbjct: 131 EG---TNADDVSDFRPGRRALK-------------------ELG-ILSPLLECGIKKEEI 167

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           R L++EMGL    K      C   +  Y + +
Sbjct: 168 RILSKEMGLPTWGKPSY--ACLASRIPYGEEI 197


>gi|255326899|ref|ZP_05367975.1| GMP synthase [Rothia mucilaginosa ATCC 25296]
 gi|255296116|gb|EET75457.1| GMP synthase [Rothia mucilaginosa ATCC 25296]
          Length = 530

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 45/203 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSV AAL+ +  G  +    +          R+G     +     +   
Sbjct: 227 RVICALSGGVDSSVAAALVHKAVGDQLTCFFI-----DHGLLREGEREQVE-----QDYA 276

Query: 81  DTINVSHYVFDYEERF-------------RNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            ++ +     D  ERF             R A+   F  S+   +               
Sbjct: 277 ASMGIKVITIDESERFLSALDGITEPEAKRKAIGREFIRSFEEAQ--------------R 322

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L++   + GAD+            V   G       +           +         +
Sbjct: 323 KLIAEAGEEGADIKFLVQGTLYPDVVESGGGDGTANIKSHHN-------VGGLPDDLTFE 375

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + RE+G+ 
Sbjct: 376 LVEPLRTLFKDEVRAIGRELGVP 398


>gi|302392581|ref|YP_003828401.1| NH(3)-dependent NAD(+) synthetase [Acetohalobium arabaticum DSM
           5501]
 gi|302204658|gb|ADL13336.1| NH(3)-dependent NAD(+) synthetase [Acetohalobium arabaticum DSM
           5501]
          Length = 240

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 43/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DSSV A L K          +     R            QD  DA+ V D  
Sbjct: 30  VVGLSGGIDSSVTAVLSK----------MAF-PKRTLGLIMPCESNSQDRRDAQLVADEF 78

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++ + + D      N  +    S+    +  +P  +    ++ + L              
Sbjct: 79  DIDYEIVDL-----NNTLNTLLSAVDNFDDKMPKANIKPRLRMTVLY-----------YY 122

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL-FATTQQQLCDLRFPLGDMKKESVRD 202
           G  +R+ L +G D +    +           YF         L     P+G++ K  VR+
Sbjct: 123 GQ-LRNSLVIGTDNRSELKLG----------YFTKHGDGGIDLA----PMGNLVKTEVRE 167

Query: 203 LAREMGLDI 211
           +A+ + +  
Sbjct: 168 VAKLLEIPN 176


>gi|89101214|ref|ZP_01174042.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. NRRL B-14911]
 gi|89084067|gb|EAR63240.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus
           sp. NRRL B-14911]
          Length = 401

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + +VV+A SGG+D+SV    L   GY V+   L   +  +    K        V   + 
Sbjct: 2   SNQKVVLAYSGGLDTSVAIKWLGDQGYSVVACCL---DVGEGKDLKFIQEKALKVGAVQS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D +E F N   +    ++A  E   P V   +R +    L+ V  + G
Sbjct: 59  ---------YVLDVKEEFANEYALAALQAHALYEGKYPLVSALSRPLIAKKLVEVAEKEG 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 AAAVAHG 116


>gi|87123303|ref|ZP_01079154.1| GMP synthase [Synechococcus sp. RS9917]
 gi|86169023|gb|EAQ70279.1| GMP synthase [Synechococcus sp. RS9917]
          Length = 528

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 EKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               N+        +RF +           AG T     +  R +            +++
Sbjct: 276 -RKFNIHVEYIHARKRFLDK---------LAGIT---DPEEKRKIIGTEFIRVFEEESKR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESAGTNIDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + R +GL 
Sbjct: 381 KLFKDEVRKVGRSLGLP 397


>gi|325295219|ref|YP_004281733.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065667|gb|ADY73674.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 402

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 44/205 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+A SGG+D+SV+   L   G++VI  T          + +      +    A  V
Sbjct: 2   GKRVVLAYSGGLDTSVIVRWLADRGFEVITYT------ADVGQGEELGEIEEKAKKAGAV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
              I+      D +E F     +P   + A  E   P +   +R +    L+ V  Q GA
Sbjct: 56  EAIID------DIKEEFAREYCLPLMRAGALYEGKYPLLSALSRPLIAKKLVEVAHQKGA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGDM 195
           D +A G                           DQ  F   ++A        +  P+ + 
Sbjct: 110 DYVAHG---------------------STGKGNDQVRFEASVWALDPDIE--VLAPVREW 146

Query: 196 K-K---ESVRDLAREMGLDIADKSD 216
           + K   E + + A++ G+ +    +
Sbjct: 147 EFKSRDEEI-EYAKKHGIPVIATKE 170


>gi|282899767|ref|ZP_06307730.1| Glutamine amidotransferase, class-I [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195382|gb|EFA70316.1| Glutamine amidotransferase, class-I [Cylindrospermopsis raciborskii
           CS-505]
          Length = 540

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++     D RV++A+SGGVDSS +A LL +  G  +  V +      +   RK       
Sbjct: 229 EIRAKVSDRRVLLALSGGVDSSTLAFLLHKAIGDQLTCVFI-----DQGFMRKLEPERLL 283

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++      +  ++     +  +RF NA+                    +  ++      
Sbjct: 284 KLFQ-----EQFHIPVEYVNARDRFINAIAGVTDPEEKRRR------IGHEFIRV--FEE 330

Query: 132 VTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            +++LG  D LA G  Y       G +   +      + ++   +  +    +     L 
Sbjct: 331 TSKRLGHFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLRFKLV 388

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR + R +GL 
Sbjct: 389 EPLRKLFKDEVRKVGRSLGLP 409


>gi|156932952|ref|YP_001436868.1| GMP synthase [Cronobacter sakazakii ATCC BAA-894]
 gi|226738454|sp|A7MGU1|GUAA_ENTS8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|156531206|gb|ABU76032.1| hypothetical protein ESA_00755 [Cronobacter sakazakii ATCC BAA-894]
          Length = 525

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 NDRVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V D     H+  +       A    F  + A  + P         V          +L  
Sbjct: 273 VMDMFG-DHFGLNIVHVPAEA---RFLDALAGIDEPEAKRKTIGRVFVEVFDEEALKLED 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 329 VKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKMGLVEPLKELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 382 DEVRKIGLELGLP 394


>gi|53711824|ref|YP_097816.1| argininosuccinate synthase [Bacteroides fragilis YCH46]
 gi|255009885|ref|ZP_05282011.1| argininosuccinate synthase [Bacteroides fragilis 3_1_12]
 gi|265765192|ref|ZP_06093467.1| argininosuccinate synthase [Bacteroides sp. 2_1_16]
 gi|313147673|ref|ZP_07809866.1| argininosuccinate synthase [Bacteroides fragilis 3_1_12]
 gi|52214689|dbj|BAD47282.1| argininosuccinate synthase [Bacteroides fragilis YCH46]
 gi|263254576|gb|EEZ26010.1| argininosuccinate synthase [Bacteroides sp. 2_1_16]
 gi|313136440|gb|EFR53800.1| argininosuccinate synthase [Bacteroides fragilis 3_1_12]
          Length = 401

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   QKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L      +
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYEKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYAK 110

Query: 135 QLGADVLATG 144
           ++GA+ +A G
Sbjct: 111 EIGAEAIAHG 120


>gi|121602703|ref|YP_989608.1| argininosuccinate synthase [Bartonella bacilliformis KC583]
 gi|166219947|sp|A1UUF5|ASSY_BARBK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|120614880|gb|ABM45481.1| argininosuccinate synthase [Bartonella bacilliformis KC583]
          Length = 407

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 57/218 (26%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MNKWTDVKKVVLAYSGGLDTSIILKWLQSELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTV 124
           +  ARR  + + +   Y+ D  E F    + P   +       Y  G +    +   R  
Sbjct: 48  LESARRKAEIMGIKEIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKR-- 105

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATT 181
               L+ + ++ GAD +A G                           DQ  F    +A  
Sbjct: 106 ----LIEIAKETGADAIAHG---------------------ATGKGNDQVRFELSAYALD 140

Query: 182 QQQLCDLRFPLGDMK-KE--SVRDLAREMGLDIADKSD 216
                 +  P  D   K    + + AR   + +    +
Sbjct: 141 PDI--KIIAPWRDWTFKSRTDLIEFARVHQIPVEKDKE 176


>gi|114332211|ref|YP_748433.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosomonas eutropha C91]
 gi|122313115|sp|Q0ADW4|GUAA_NITEC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114309225|gb|ABI60468.1| GMP synthase (glutamine-hydrolyzing) [Nitrosomonas eutropha C91]
          Length = 519

 Score = 60.6 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV AAL+ R  G  ++ V +     R    ++      +++       
Sbjct: 223 KVILGLSGGVDSSVAAALIHRAIGDQLVCVFVDNGLLRLNEAKQTMETFSRNLA------ 276

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQ 135
               V+    D   +F              G T     +  R     + +        + 
Sbjct: 277 ----VNVIYVDASRQFLEQ---------LKGIT---DPEQKRRTIGREFVEIFQQEAAKI 320

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +       ++  + +           +    +     L  PL ++
Sbjct: 321 ENVKWLAQGTIYPDVIESAGSHTKKSGLIKSHHN-------VGGLPETLRLKLLEPLREL 373

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L   +GL 
Sbjct: 374 FKDEVRELGLALGLP 388


>gi|257065335|ref|YP_003145007.1| argininosuccinate synthase [Slackia heliotrinireducens DSM 20476]
 gi|256792988|gb|ACV23658.1| argininosuccinate synthase [Slackia heliotrinireducens DSM 20476]
          Length = 404

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VV+A SGG+D+SVV   L+     DVI +   +    +           + +    
Sbjct: 3   EKKKVVLAYSGGLDTSVVLKWLQVEKNLDVIAICGNVGQDDEDLDF----IKQKALDMGA 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              D         D  E + +  +    ++    E   P +   +R +    ++ V  + 
Sbjct: 59  IAADA-------VDMREEYADKYLTKALAANGLYENKYPLLSALSRPLLSKYMVDVAHKH 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADYIAHG 119


>gi|224536323|ref|ZP_03676862.1| hypothetical protein BACCELL_01195 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522062|gb|EEF91167.1| hypothetical protein BACCELL_01195 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 401

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   EKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNE 51

Query: 78  RVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +    YV  D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAKEYVTIDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 111 EIGADAIAHG 120


>gi|157371830|ref|YP_001479819.1| GMP synthase [Serratia proteamaculans 568]
 gi|226739724|sp|A8GHV1|GUAA_SERP5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157323594|gb|ABV42691.1| GMP synthase, large subunit [Serratia proteamaculans 568]
          Length = 525

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 EDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FSDLLS--VT 133
           V +     H+  +            F S+ A  + P       R +    F +L      
Sbjct: 273 VLEMFG-DHFGLNIVHVAAE---DRFLSALAGVDEPE----AKRKIIGRVFVELFDEEAC 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +Q     LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KQSEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVEPLK 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|57242097|ref|ZP_00370037.1| NAD+ synthetase [Campylobacter upsaliensis RM3195]
 gi|57017289|gb|EAL54070.1| NAD+ synthetase [Campylobacter upsaliensis RM3195]
          Length = 249

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 43/196 (21%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           N K   V++ +SGG+DS++VA L K+    +V  + +                   ++ D
Sbjct: 20  NAKAKGVILGLSGGIDSALVATLCKKALKDEVFALLM-----------PTQHSNEANLKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A ++C+ +N+ + + +        ++  F                   ++     +   +
Sbjct: 69  ALKLCEDLNLKYKIINI-----ETILQAFLKESEMTNQ----------IRTG---NYAAR 110

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +   +L     +++ L VG   K   ++              + T    L     P+G +
Sbjct: 111 IRMSLLYDYSALKNYLVVGTSNKSELML-------------GYGTIYGDLACAFNPIGKL 157

Query: 196 KKESVRDLAREMGLDI 211
            K  +  LA+ + LD+
Sbjct: 158 YKSEIYTLAKYLNLDV 173


>gi|327310688|ref|YP_004337585.1| exsB protein [Thermoproteus uzoniensis 768-20]
 gi|326947167|gb|AEA12273.1| exsB protein [Thermoproteus uzoniensis 768-20]
          Length = 496

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 26/206 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  +  R +V  SGG+DS+  AA L R GY+V  +    Y        + +        
Sbjct: 246 AEPGRRRRALVVASGGLDSTTAAAALLRQGYEVALLHF-NYRHVAEDPERRA-------- 296

Query: 75  DARRVCDTINVSHYVFDY--------EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             R +   +       D                 I          E     V     V  
Sbjct: 297 -VREISKALGTPLIEVDMDFFKLAGRSPLLGEGEINRVDMGREGAEFAHEWVPARNFVFI 355

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +  +++    G D +A G  +       D+      +              +AT  Q+  
Sbjct: 356 ALAVALAEAWGYDYVALGINMEEAGAYPDNEMELVRLL--------NQALPYATGPQRRV 407

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
            L  P+G + K  +  L  E+G  + 
Sbjct: 408 QLLMPVGGLVKHEIVRLGLEVGAPLH 433


>gi|227509450|ref|ZP_03939499.1| argininosuccinate synthase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191162|gb|EEI71229.1| argininosuccinate synthase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 431

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++A SGG+D+SV    L   GYDV+   + +   +  +  K        V     
Sbjct: 3   ENKKVILAYSGGLDTSVAIPWLNDKGYDVVACCINVGEGKDLNFIKQKALNVGAVEA--- 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D  + F +        + A  E   P +   +R +    L+ +  Q  
Sbjct: 60  ---------YVIDALDDFADHYASVALKANAMYEGAYPLISALSRPLISKALVDLAHQEH 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT--QQQLCDLRFPL--G 193
           A  +A G                   C       DQ  F  A      QL  +  P+   
Sbjct: 111 AQAVAHG-------------------CTGK--GNDQVRFEVAIHSLDPQLE-VLSPVRDW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   + A++  + I    DS
Sbjct: 149 HWSREQEIEYAKKHNIPIPIDLDS 172


>gi|255657558|ref|ZP_05402967.1| putative ATPase [Clostridium difficile QCD-23m63]
 gi|296452767|ref|ZP_06894456.1| ExsB family protein [Clostridium difficile NAP08]
 gi|296879981|ref|ZP_06903951.1| ExsB family protein [Clostridium difficile NAP07]
 gi|296258386|gb|EFH05292.1| ExsB family protein [Clostridium difficile NAP08]
 gi|296428958|gb|EFH14835.1| ExsB family protein [Clostridium difficile NAP07]
          Length = 244

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D D   ++ ++ V +SGG DS  +  +LK         +++I +TL            G 
Sbjct: 16  DFDMIQENDKIAVGLSGGKDSLTLLHILKSYQRFSPQNFELIAITL---------NTGGV 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             +  D     ++C  INV  Y       F+  +               PC  C   ++ 
Sbjct: 67  DNSPLD-----KLCKEINVPFY------EFQTDIKEIVFDIRKE---KNPCALC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L    ++LG + +A GH+
Sbjct: 112 GALNDNAKKLGCNKVALGHH 131


>gi|146283337|ref|YP_001173490.1| GMP synthase [Pseudomonas stutzeri A1501]
 gi|145571542|gb|ABP80648.1| GMP synthase [Pseudomonas stutzeri A1501]
 gi|327481729|gb|AEA85039.1| GMP synthase [Pseudomonas stutzeri DSM 4166]
          Length = 526

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +              
Sbjct: 228 DANVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF--------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                  + + V     D E +F   +             G T +          F    
Sbjct: 279 ------AENMGVKVIRADAEAQFLGNLEGEADPEKKRKIIGRTFIDV--------FDA-- 322

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++      LA G      +        +  + +           +    ++    L  
Sbjct: 323 EASKLPNIQFLAQGTIYPDVIESAGAKSGKAHVIKSHHN-------VGGLPEEMNLKLVE 375

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 376 PLRELFKDEVRKIGLELGLP 395


>gi|116754005|ref|YP_843123.1| PP-loop domain-containing protein [Methanosaeta thermophila PT]
 gi|116665456|gb|ABK14483.1| PP-loop domain protein [Methanosaeta thermophila PT]
          Length = 282

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 45/207 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V+ SGGVDSS++AA+ +    DV+G      +   A          +++  A  V   +
Sbjct: 22  LVSFSGGVDSSLLAAISR----DVLG------DGAVAVILDSPLMPRRELEHATSVAQLL 71

Query: 84  NVSHYVFDYEERFR-NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            +   V    + F   +VI           +P  C  C ++     L  +   LG   +A
Sbjct: 72  GIRCIVA-VHDVFELESVIE---------NSPERCYHCKKSSA-GILKKLANSLGISCVA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G           D +  R   R  D              + +C   F    + K  +R+
Sbjct: 121 DG-------VNTTDYEDFRPGIRASDE-------------EGICHP-FVDAGISKSDIRE 159

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYF 229
           +AR +GLD  ++  S   C   +  Y 
Sbjct: 160 IARSIGLDFWNRPSS--ACLASRIPYG 184


>gi|329906758|ref|ZP_08274508.1| GMP synthase (glutamine-hydrolyzing) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547160|gb|EGF32023.1| GMP synthase (glutamine-hydrolyzing) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 534

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 36/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGD-----MVMD--MFAT 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TRQL 136
            + V     D  ++F           + AG T     +  R +   + + V      +  
Sbjct: 275 NLGVKVIRVDATDQFM---------GHLAGVT---DPEAKRKIIGREFVEVFQVESAKLK 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +     GK+   +    +        +    +     L  PL ++ 
Sbjct: 323 NAKWLAQGTIYPDVIESAGKGKKGHTIKSHHN--------VGGLPETLNLKLLEPLRELF 374

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 375 KDEVRALGVALGLP 388


>gi|289522462|ref|ZP_06439316.1| argininosuccinate synthase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504298|gb|EFD25462.1| argininosuccinate synthase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 419

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 41/204 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    L   GYDV+  T     +          C  + +      
Sbjct: 3   KGKVVLAYSGGLDTSVAIKWLMDQGYDVVTFT-----ADVGQVVDLEACKERALL--TGA 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
           C+      YV D +E F    + P   + A  +   P     +R +    L  +    GA
Sbjct: 56  CNA-----YVMDLKEEFVQDFVWPALKANAMYQGTYPLTSALSRPLISKYLAKIAEIEGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--G 193
             +A G                          + Q         + L     +  P+   
Sbjct: 111 VAVAHG-----------------------CTGKGQDQVRIEICTRALKPDLKVIAPVRDW 147

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              ++   D A+E G+ +     S
Sbjct: 148 HFSRDDEIDYAKEHGIPVPVTKKS 171


>gi|150003178|ref|YP_001297922.1| argininosuccinate synthase [Bacteroides vulgatus ATCC 8482]
 gi|237711978|ref|ZP_04542459.1| argininosuccinate synthase [Bacteroides sp. 9_1_42FAA]
 gi|254882464|ref|ZP_05255174.1| argininosuccinate synthase [Bacteroides sp. 4_3_47FAA]
 gi|265753213|ref|ZP_06088782.1| argininosuccinate synthase [Bacteroides sp. 3_1_33FAA]
 gi|319640435|ref|ZP_07995157.1| argininosuccinate synthase [Bacteroides sp. 3_1_40A]
 gi|149931602|gb|ABR38300.1| argininosuccinate synthase [Bacteroides vulgatus ATCC 8482]
 gi|229454673|gb|EEO60394.1| argininosuccinate synthase [Bacteroides sp. 9_1_42FAA]
 gi|254835257|gb|EET15566.1| argininosuccinate synthase [Bacteroides sp. 4_3_47FAA]
 gi|263236399|gb|EEZ21894.1| argininosuccinate synthase [Bacteroides sp. 3_1_33FAA]
 gi|317387922|gb|EFV68779.1| argininosuccinate synthase [Bacteroides sp. 3_1_40A]
          Length = 402

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 4   KKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNE 52

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D    +    +              P    +  + F  L       
Sbjct: 53  ENAYKLGAVKYVTLDVTREYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQGLAIARYAN 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|306840809|ref|ZP_07473556.1| GMP synthase [Brucella sp. BO2]
 gi|306289204|gb|EFM60453.1| GMP synthase [Brucella sp. BO2]
          Length = 520

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV+ A+SGGVDSSV A L        +G  +T  L +     K +           A++V
Sbjct: 224 RVICALSGGVDSSVAALLAHEA----VGDQLTCILVDHGLMRKDE-----------AQQV 268

Query: 80  C----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +  N+   + D  +RF          +      P         +         R+
Sbjct: 269 VEMFREHYNLPLILVDASDRF--------IGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L GAD L  G      +          +  +           +    ++    L  PL +
Sbjct: 321 LGGADFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRE 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+GL 
Sbjct: 374 LFKDEVRLLGKELGLP 389


>gi|261855157|ref|YP_003262440.1| exsB protein [Halothiobacillus neapolitanus c2]
 gi|261835626|gb|ACX95393.1| exsB protein [Halothiobacillus neapolitanus c2]
          Length = 235

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 79/263 (30%), Gaps = 50/263 (19%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + LD      + VV +SGG+DS+ VAA+ K DGY V  V          S   G      
Sbjct: 1   MSLDTENTQPKAVVLLSGGLDSATVAAIAKSDGYQVHAV----------SFDYGQ-RHKV 49

Query: 72  DVYDARRVCDTINVSHY---VFDYEERFRNAVIV-----PFASSYAAGETPLPCVDCNRT 123
           ++  A RV   + + H+     +  +   +A+       P   + +A   P+  V     
Sbjct: 50  ELKAAYRVALQLGIQHHKMISINLNDVGGSALTDSALAVPDYDAQSAEHIPITYVPARNL 109

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
              S  L     LGA  +  G  + +  Y G    R   +                 T +
Sbjct: 110 TFLSLALGWAEILGARRIYIG--VNAVDYSGYPDCRPEFIK--QFEVTANLATAAGLTGE 165

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
               +  PL  + K  +       G+                  Y   +   N       
Sbjct: 166 PF-KIIAPLQTLTKAEIIQWGTRFGV-----------------DYAQTISCYNP------ 201

Query: 244 DIVHLNGQILGRHNGIINYTIGQ 266
                 G+  GR +       G 
Sbjct: 202 ---DEQGRACGRCDACHYRKQGF 221


>gi|302343799|ref|YP_003808328.1| GMP synthase, large subunit [Desulfarculus baarsii DSM 2075]
 gi|301640412|gb|ADK85734.1| GMP synthase, large subunit [Desulfarculus baarsii DSM 2075]
          Length = 517

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 34/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D        +V+ A+SGGVDSSVVA LL +  G D+  + +     R     + S     
Sbjct: 213 DFKARLGGKKVLCALSGGVDSSVVALLLHKAIGPDLHCIFVDNGLLRAGEVNEVSNVFR- 271

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    +   V+  V    E F +    V+ P       G T +             
Sbjct: 272 ---------EVFGVNLVVAKAAELFLSRLAGVVDPEQKRRIIGHTFIEV----------- 311

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             +  +++G  D LA G  +   +      +    + +           +    +    +
Sbjct: 312 FEAEAKKIGKVDYLAQG-TLYPDVIESVSFRGPSAVIKSHHN-------VGGLPEHMKME 363

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+  R++ RE+GL 
Sbjct: 364 LVEPLRELFKDECREVGRELGLP 386


>gi|158604989|gb|ABW74802.1| NAD+ synthetase [Campylobacter concisus 13826]
          Length = 245

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 46/200 (23%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             L    K  ++++ +SGG+DS+VVA L  R   D             A     +    +
Sbjct: 13  FSLKDKTKGKKLLLGVSGGIDSAVVATLCARAKPD----------ETHALIMPTASSNKE 62

Query: 72  DVYDARRVCDTINVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           ++ DA  +C+ +N+ + V   E     F    I    S+   G            V+ S 
Sbjct: 63  NMDDALNLCEKLNIKYKVLSIEGILNAFYET-IDVNLSNLRKGNLAA-------RVRMSL 114

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L   +               + L +G   K   ++              + T    L   
Sbjct: 115 LYDYS------------SSINALVIGTSNKSELML-------------GYGTIFGDLACA 149

Query: 189 RFPLGDMKKESVRDLAREMG 208
             P+G++ K  + + A+ +G
Sbjct: 150 INPIGELYKSEIFEFAKHLG 169


>gi|299143875|ref|ZP_07036955.1| GMP synthase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518360|gb|EFI42099.1| GMP synthase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 505

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +S   ++   ++     D +V++A+SGGVDSSV AALL +  G  +  +     +     
Sbjct: 193 MSNYAKMAIEEVKNKVGDGKVLLALSGGVDSSVTAALLSKAVGSKLTCIF---VDHGLMR 249

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV 118
           K +G         +         ++    D E+RF N    V  P A   A GE  +   
Sbjct: 250 KNEGD--------EVEAAFKNSGMNFIRVDAEDRFLNKLKGVTDPEAKRKAIGEEFIRVF 301

Query: 119 D-CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           +   R +K             D LA G        + + G     + +           +
Sbjct: 302 EDEGRKIK-----------SVDFLAQG---TIYPDIIESGLGDAAVIKSHHN-------V 340

Query: 178 FATTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
               +     DL  PL  + K+ VR+L RE+GL 
Sbjct: 341 GGLPEVVDFKDLVEPLKMLFKDEVRNLGRELGLP 374


>gi|251788758|ref|YP_003003479.1| GMP synthase, large subunit [Dickeya zeae Ech1591]
 gi|247537379|gb|ACT06000.1| GMP synthase, large subunit [Dickeya zeae Ech1591]
          Length = 525

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 KDKVILGLSGGVDSSVTALLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  VCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           V +         +   +          F S+ A  + P         V          +L
Sbjct: 273 VMEMFGDQFGLNIVHVQAE------NRFLSALAGIDDPEAKRKTIGRVFVEVFDEEAGKL 326

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +        +  + +           +          L  PL ++
Sbjct: 327 TDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMALGLVEPLKEL 379

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 380 FKDEVRKIGLELGLP 394


>gi|21282096|ref|NP_645184.1| GMP synthase [Staphylococcus aureus subsp. aureus MW2]
 gi|49485271|ref|YP_042492.1| GMP synthase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297209095|ref|ZP_06925494.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911096|ref|ZP_07128545.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|24211742|sp|Q8NY69|GUAA_STAAW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56748992|sp|Q6GC81|GUAA_STAAS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21203532|dbj|BAB94232.1| GMP synthase [Staphylococcus aureus subsp. aureus MW2]
 gi|49243714|emb|CAG42139.1| putative GMP synthase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|283469695|emb|CAQ48906.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|296886028|gb|EFH24962.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300887275|gb|EFK82471.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|329732341|gb|EGG68691.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 513

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|325958014|ref|YP_004289480.1| argininosuccinate synthase [Methanobacterium sp. AL-21]
 gi|325329446|gb|ADZ08508.1| Argininosuccinate synthase [Methanobacterium sp. AL-21]
          Length = 393

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV   LL+             YN    +          ++    +V +
Sbjct: 3   KVVLAFSGGLDTSVCVKLLQEK-----------YNMEVVTACVDVGQPEDEIERPAQVAN 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            I V  HY  D +  F    I     + A  E  PL        +     + + ++  AD
Sbjct: 52  NIGVKKHYTIDAKHEFAEEFIFRAIKANAMYEGYPLSTSLARPLIAMKI-VELAKKEQAD 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 AIAHG 115


>gi|224824532|ref|ZP_03697639.1| GMP synthase, large subunit [Lutiella nitroferrum 2002]
 gi|224603025|gb|EEG09201.1| GMP synthase, large subunit [Lutiella nitroferrum 2002]
          Length = 525

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 64/194 (32%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 223 VILGLSGGVDSSVAAALIHRAIGEQLTCVF---VDHGLLRLNEGKMVMEMF-------AQ 272

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG--- 137
            + V     D  E+F             AGET     +  R +  ++ +    R+ G   
Sbjct: 273 NLGVKVIHVDATEQFMGK---------LAGET---DPEKKRKIIGAEFVEVFQRESGKLT 320

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +          L  PL D+ 
Sbjct: 321 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPDDMNLKLLEPLRDLF 373

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 374 KDEVRQLGVALGLP 387


>gi|209545327|ref|YP_002277556.1| GMP synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533004|gb|ACI52941.1| GMP synthase, large subunit [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 541

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+  +SGGVDSSV A L+    G  +  +            R G          A  V 
Sbjct: 245 HVICGLSGGVDSSVAAVLIHEAIGDQLTCIF-----VDPGILRAGE---------AEEVV 290

Query: 81  D----TINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  N+     D  + F      V  P       G   +   +              
Sbjct: 291 KTFRGRFNIKLVHRDASDLFLSALEGVTDPEIKRKTIGRLFVEVFEE----------EAA 340

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +  GAD LA G      +          +  +           +     +    L  PL 
Sbjct: 341 KLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMKMQLVEPLR 393

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR+L RE+G+ 
Sbjct: 394 ELFKDEVRELGRELGIP 410


>gi|325832043|ref|ZP_08165140.1| TIGR00268 family protein [Eggerthella sp. HGA1]
 gi|325486364|gb|EGC88816.1| TIGR00268 family protein [Eggerthella sp. HGA1]
          Length = 210

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 74/198 (37%), Gaps = 50/198 (25%)

Query: 22  RVVVAMSGGVDSS--VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+ VA SGG DSS  + AAL  R G DV           KA   + +     ++ DA+R+
Sbjct: 24  RLAVAFSGGCDSSFLLAAAL--RAGCDV-----------KAYGVRTAFQPAFEIDDAKRL 70

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +     + D +   +  +             P  C  C   + FS +L+   + G +
Sbjct: 71  AAELGADFELVDADVLAQGEIC---------ANGPDRCYRCKTFI-FSTILARMAEDGFE 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
           VLA G        V DD   R       +L                  +  PL    M K
Sbjct: 121 VLADG------TNVTDDPANRPGFQALAELG-----------------VVSPLRRAGMTK 157

Query: 198 ESVRDLAREMGLDIADKS 215
           + VR  +RE+GL  ADK 
Sbjct: 158 DDVRAASRELGLFTADKP 175


>gi|282926485|ref|ZP_06334116.1| GMP synthase [Staphylococcus aureus A9765]
 gi|282592205|gb|EFB97225.1| GMP synthase [Staphylococcus aureus A9765]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|258436914|ref|ZP_05689254.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9299]
 gi|257848705|gb|EEV72692.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9299]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|145589603|ref|YP_001156200.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|226739657|sp|A4SYS2|GUAA_POLSQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145048009|gb|ABP34636.1| GMP synthase (glutamine-hydrolyzing) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 535

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 65/209 (31%), Gaps = 45/209 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
            + K   D  V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +    
Sbjct: 223 HIRKQVGDEEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMEMF-- 280

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                           + V     D    F                T +   +  R +  
Sbjct: 281 -------------ARNLGVKVIRVDAASTFMGK------------LTGVADPEAKRKIIG 315

Query: 127 SDLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            + + + +        A  LA G      +     GK+     +           +    
Sbjct: 316 KEFVEIFQSESGKIENAKWLAQGTIYPDVIESAGKGKKGAHTIKSHHN-------VGGLP 368

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     L  PL ++ K+ VR+L   +GL 
Sbjct: 369 EDMHLKLLEPLRELFKDEVRELGVALGLP 397


>gi|82750102|ref|YP_415843.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus RF122]
 gi|91206830|sp|Q2YVL5|GUAA_STAAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|82655633|emb|CAI80029.1| glutamine-hydrolyzing GMP synthase [Staphylococcus aureus RF122]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|313679249|ref|YP_004056988.1| nh(3)-dependent nad(+) synthetase [Oceanithermus profundus DSM
           14977]
 gi|313151964|gb|ADR35815.1| NH(3)-dependent NAD(+) synthetase [Oceanithermus profundus DSM
           14977]
          Length = 283

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 64/191 (33%), Gaps = 44/191 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + VVA SGGVDSSV  AL  R  G + V  ++L     R +S         + V  AR  
Sbjct: 39  KAVVAASGGVDSSVTLALAARALGPENVHALSL---PHRDSS--------PESVAHARLA 87

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +   V+    D         I P    YAA     P +   R                 
Sbjct: 88  AERFGVALETVD---------ITPMVEGYAAQT---PDLTPRRKGNV------------- 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                   R+R+ V  D   +          + +  F + T          PLGD+ K  
Sbjct: 123 ------MARARMIVTFDKSEQYRALPLGTGNKTERLFGYFTWHADDSPPVNPLGDLYKTQ 176

Query: 200 VRDLAREMGLD 210
           V  LA  +G+ 
Sbjct: 177 VWGLAEHLGVP 187


>gi|258424557|ref|ZP_05687434.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9635]
 gi|257845152|gb|EEV69189.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9635]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|254458620|ref|ZP_05072045.1| NAD+ synthetase [Campylobacterales bacterium GD 1]
 gi|207084928|gb|EDZ62215.1| NAD+ synthetase [Campylobacterales bacterium GD 1]
          Length = 268

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 66/193 (34%), Gaps = 51/193 (26%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVVV +SGG+DS+VVA +  +        T +  +     K      +   + DA  +C
Sbjct: 25  KRVVVGLSGGLDSAVVAVIAHK--------TFK--DDLLCVKMPSQYSSQSSLDDADALC 74

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD----CNRTVKFSDLLSV-TRQ 135
                     D+  +   A I P   +Y     P          +  ++ S L  +  R+
Sbjct: 75  R---------DFSMKAITASIEPMLRAYEE-LNPNMDNLRKGNFSSRMRMSTLFDISARE 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                        + L +G   K   ++              + T    L     P+GD+
Sbjct: 125 -------------NALVLGTSNKSELML-------------GYGTLYGDLSSAVNPIGDL 158

Query: 196 KKESVRDLAREMG 208
            K  V +LA  +G
Sbjct: 159 YKSEVYELADYLG 171


>gi|160888019|ref|ZP_02069022.1| hypothetical protein BACUNI_00425 [Bacteroides uniformis ATCC 8492]
 gi|270295613|ref|ZP_06201814.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478596|ref|ZP_07937753.1| argininosuccinate synthase [Bacteroides sp. 4_1_36]
 gi|156862518|gb|EDO55949.1| hypothetical protein BACUNI_00425 [Bacteroides uniformis ATCC 8492]
 gi|270274860|gb|EFA20721.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905237|gb|EFV27034.1| argininosuccinate synthase [Bacteroides sp. 4_1_36]
          Length = 401

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   KKKKVVVAFSGGLDTSFTVMYLTKEKGYEVYAA-----------CANTGGFSAEQLKTNE 51

Query: 78  RVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +    YV  D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAKEYVTLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 111 EIGADAIAHG 120


>gi|62317722|ref|YP_223575.1| GMP synthase [Brucella abortus bv. 1 str. 9-941]
 gi|83269705|ref|YP_418996.1| GMP synthase [Brucella melitensis biovar Abortus 2308]
 gi|163844537|ref|YP_001622192.1| GMP synthase [Brucella suis ATCC 23445]
 gi|189022977|ref|YP_001932718.1| GMP synthase [Brucella abortus S19]
 gi|225628806|ref|ZP_03786840.1| GMP synthase, C-terminal domain-containing protein [Brucella ceti
           str. Cudo]
 gi|237817265|ref|ZP_04596257.1| GMP synthase, C-terminal domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254691225|ref|ZP_05154479.1| GMP synthase [Brucella abortus bv. 6 str. 870]
 gi|254695471|ref|ZP_05157299.1| GMP synthase [Brucella abortus bv. 3 str. Tulya]
 gi|254699012|ref|ZP_05160840.1| GMP synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699635|ref|ZP_05161463.1| GMP synthase [Brucella suis bv. 5 str. 513]
 gi|254706107|ref|ZP_05167935.1| GMP synthase [Brucella pinnipedialis M163/99/10]
 gi|254711593|ref|ZP_05173404.1| GMP synthase [Brucella pinnipedialis B2/94]
 gi|254712190|ref|ZP_05174001.1| GMP synthase [Brucella ceti M644/93/1]
 gi|254715260|ref|ZP_05177071.1| GMP synthase [Brucella ceti M13/05/1]
 gi|254720561|ref|ZP_05182372.1| GMP synthase [Brucella sp. 83/13]
 gi|254732459|ref|ZP_05191037.1| GMP synthase [Brucella abortus bv. 4 str. 292]
 gi|256015143|ref|YP_003105152.1| GMP synthase [Brucella microti CCM 4915]
 gi|256029771|ref|ZP_05443385.1| GMP synthase [Brucella pinnipedialis M292/94/1]
 gi|256059419|ref|ZP_05449621.1| GMP synthase [Brucella neotomae 5K33]
 gi|256157944|ref|ZP_05455862.1| GMP synthase [Brucella ceti M490/95/1]
 gi|256253097|ref|ZP_05458633.1| GMP synthase [Brucella ceti B1/94]
 gi|256256412|ref|ZP_05461948.1| GMP synthase [Brucella abortus bv. 9 str. C68]
 gi|260167121|ref|ZP_05753932.1| GMP synthase [Brucella sp. F5/99]
 gi|260544963|ref|ZP_05820784.1| GuaA protein [Brucella abortus NCTC 8038]
 gi|260756828|ref|ZP_05869176.1| GMP synthetase [Brucella abortus bv. 6 str. 870]
 gi|260760259|ref|ZP_05872607.1| GMP synthetase [Brucella abortus bv. 4 str. 292]
 gi|260763498|ref|ZP_05875830.1| GMP synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882644|ref|ZP_05894258.1| GMP synthase [Brucella abortus bv. 9 str. C68]
 gi|261215857|ref|ZP_05930138.1| GMP synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261216986|ref|ZP_05931267.1| GMP synthase [Brucella ceti M13/05/1]
 gi|261220200|ref|ZP_05934481.1| GMP synthase [Brucella ceti B1/94]
 gi|261313545|ref|ZP_05952742.1| GMP synthase [Brucella pinnipedialis M163/99/10]
 gi|261319216|ref|ZP_05958413.1| GMP synthase [Brucella pinnipedialis B2/94]
 gi|261319856|ref|ZP_05959053.1| GMP synthase [Brucella ceti M644/93/1]
 gi|261323385|ref|ZP_05962582.1| GMP synthase [Brucella neotomae 5K33]
 gi|261750099|ref|ZP_05993808.1| GMP synthase [Brucella suis bv. 5 str. 513]
 gi|261756521|ref|ZP_06000230.1| bifunctional GMP synthase/glutamine amidotransferase [Brucella sp.
           F5/99]
 gi|265985594|ref|ZP_06098329.1| GMP synthase [Brucella sp. 83/13]
 gi|265986783|ref|ZP_06099340.1| GMP synthase [Brucella pinnipedialis M292/94/1]
 gi|265996453|ref|ZP_06109010.1| GMP synthase [Brucella ceti M490/95/1]
 gi|294853356|ref|ZP_06794028.1| GMP synthase [Brucella sp. NVSL 07-0026]
 gi|297249772|ref|ZP_06933473.1| guaA, GMP synthase [Brucella abortus bv. 5 str. B3196]
 gi|306838072|ref|ZP_07470929.1| GMP synthase [Brucella sp. NF 2653]
 gi|306845655|ref|ZP_07478224.1| GMP synthase [Brucella sp. BO1]
 gi|75495459|sp|Q577H0|GUAA_BRUAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206796|sp|Q2YK38|GUAA_BRUA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738393|sp|B2SBN5|GUAA_BRUA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738396|sp|A9WY54|GUAA_BRUSI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|62197915|gb|AAX76214.1| GuaA, GMP synthase [Brucella abortus bv. 1 str. 9-941]
 gi|82939979|emb|CAJ13008.1| Glutamine amidotransferase class-I:Carbamoyl-phosphate synthase,
           GATase domain:GMP synthase, C terminal:GMP synthase,
           N-termi [Brucella melitensis biovar Abortus 2308]
 gi|163675260|gb|ABY39370.1| GMP synthase, C-terminal domain [Brucella suis ATCC 23445]
 gi|189021551|gb|ACD74272.1| GuaA, GMP synthase [Brucella abortus S19]
 gi|225616652|gb|EEH13700.1| GMP synthase, C-terminal domain-containing protein [Brucella ceti
           str. Cudo]
 gi|237788078|gb|EEP62294.1| GMP synthase, C-terminal domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|255997803|gb|ACU49490.1| GMP synthase [Brucella microti CCM 4915]
 gi|260098234|gb|EEW82108.1| GuaA protein [Brucella abortus NCTC 8038]
 gi|260670577|gb|EEX57517.1| GMP synthetase [Brucella abortus bv. 4 str. 292]
 gi|260673919|gb|EEX60740.1| GMP synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676936|gb|EEX63757.1| GMP synthetase [Brucella abortus bv. 6 str. 870]
 gi|260872172|gb|EEX79241.1| GMP synthase [Brucella abortus bv. 9 str. C68]
 gi|260917464|gb|EEX84325.1| GMP synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|260918784|gb|EEX85437.1| GMP synthase [Brucella ceti B1/94]
 gi|260922075|gb|EEX88643.1| GMP synthase [Brucella ceti M13/05/1]
 gi|261292546|gb|EEX96042.1| GMP synthase [Brucella ceti M644/93/1]
 gi|261298439|gb|EEY01936.1| GMP synthase [Brucella pinnipedialis B2/94]
 gi|261299365|gb|EEY02862.1| GMP synthase [Brucella neotomae 5K33]
 gi|261302571|gb|EEY06068.1| GMP synthase [Brucella pinnipedialis M163/99/10]
 gi|261736505|gb|EEY24501.1| bifunctional GMP synthase/glutamine amidotransferase [Brucella sp.
           F5/99]
 gi|261739852|gb|EEY27778.1| GMP synthase [Brucella suis bv. 5 str. 513]
 gi|262550750|gb|EEZ06911.1| GMP synthase [Brucella ceti M490/95/1]
 gi|264658980|gb|EEZ29241.1| GMP synthase [Brucella pinnipedialis M292/94/1]
 gi|264664186|gb|EEZ34447.1| GMP synthase [Brucella sp. 83/13]
 gi|294819011|gb|EFG36011.1| GMP synthase [Brucella sp. NVSL 07-0026]
 gi|297173641|gb|EFH33005.1| guaA, GMP synthase [Brucella abortus bv. 5 str. B3196]
 gi|306273976|gb|EFM55803.1| GMP synthase [Brucella sp. BO1]
 gi|306406809|gb|EFM63031.1| GMP synthase [Brucella sp. NF 2653]
          Length = 520

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        +G  +T  L +     K +           A++V
Sbjct: 224 KVICALSGGVDSSVAALLAHEA----VGDQLTCILVDHGLMRKDE-----------AQQV 268

Query: 80  C----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +  N+   + D  +RF          +      P         +         R+
Sbjct: 269 VEMFREHYNLPLILVDASDRF--------IGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L GAD L  G      +          +  +           +    ++    L  PL +
Sbjct: 321 LGGADFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRE 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+GL 
Sbjct: 374 LFKDEVRLLGKELGLP 389


>gi|33152557|ref|NP_873910.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus ducreyi 35000HP]
 gi|44887940|sp|Q7VLE9|GUAA_HAEDU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33148781|gb|AAP96299.1| GMP synthase, glutamine-hydrolyzing [Haemophilus ducreyi 35000HP]
          Length = 523

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 NDQVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + EERF  A+         A       +     +         
Sbjct: 277 -------DKFGLNIIRVNAEERFLEALKG--IDEPEAKRK----IIGKVFI--DIFDDEA 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTDVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLTLGLP 392


>gi|188576626|ref|YP_001913555.1| GMP synthase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|226739767|sp|B2SLG1|GUAA_XANOP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188521078|gb|ACD59023.1| GMP synthase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 521

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 226 VILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF-AE 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----- 136
            + V     +  +R+              G   +   +  R +  +  + +  +      
Sbjct: 276 HMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVEIFDEESNTLA 323

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +        +  + +           +    Q     L  PL ++ 
Sbjct: 324 NAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPQHMKLGLVEPLRELF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 377 KDEVRRLGVELGLP 390


>gi|87045850|gb|ABD17746.1| putative GMP synthase [Methanococcus voltae PS]
          Length = 318

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 84/269 (31%), Gaps = 58/269 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVYDARRV 79
           + V +SGG DS V+A +L            Q+ NS                  +    + 
Sbjct: 59  IGVGISGGKDSLVMAHILNE-------FFNQIPNSKIVGIMVNEGIEGFRNDGIEKGIKF 111

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSDLLSVTR 134
           C+   + +++  + E      I     S          T  PC  C   ++   L  V  
Sbjct: 112 CEEYGIEYHIVTFSE-----YIDSDLDSIVAIAKEKNMTMNPCSFCG-VIRRKILNRVAI 165

Query: 135 QLGADVLATGH------YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           + G D LA GH            Y+  D K+  I+ +    ++    F+           
Sbjct: 166 EKGCDYLAIGHNLDDISQAVMMNYIEGDIKKLAILGKSSQSDK----FVKRIK------- 214

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
             PL  + +E V+  A     DI +    ++ C      Y   V           DI+  
Sbjct: 215 --PLSKIPEEEVKLFA-----DILEMDYHKEPCPYSCLSYRSEVS----------DIIDT 257

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP 277
             +   +H G +   +     L   +  P
Sbjct: 258 LEE---KHAGAMYSIVAGYERLLEYLEVP 283


>gi|23500114|ref|NP_699554.1| GMP synthase [Brucella suis 1330]
 gi|161620433|ref|YP_001594319.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Brucella canis ATCC 23365]
 gi|254702758|ref|ZP_05164586.1| GMP synthase [Brucella suis bv. 3 str. 686]
 gi|260568335|ref|ZP_05838804.1| GMP synthase [Brucella suis bv. 4 str. 40]
 gi|261753353|ref|ZP_05997062.1| GMP synthase [Brucella suis bv. 3 str. 686]
 gi|38257625|sp|Q8FWT4|GUAA_BRUSU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738394|sp|A9MEB0|GUAA_BRUC2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|23463708|gb|AAN33559.1| GMP synthase [Brucella suis 1330]
 gi|161337244|gb|ABX63548.1| GMP synthase, C-terminal domain [Brucella canis ATCC 23365]
 gi|260155000|gb|EEW90081.1| GMP synthase [Brucella suis bv. 4 str. 40]
 gi|261743106|gb|EEY31032.1| GMP synthase [Brucella suis bv. 3 str. 686]
          Length = 520

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        +G  +T  L +     K +           A++V
Sbjct: 224 KVICALSGGVDSSVAALLAHEA----VGDQLTCILVDHGLMRKDE-----------AQQV 268

Query: 80  C----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +  N+   + D  +RF          +      P         +         R+
Sbjct: 269 VEMFREHYNLPLILVDASDRF--------IGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L GAD L  G      +          +  +           +    ++    L  PL +
Sbjct: 321 LGGADFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRE 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+GL 
Sbjct: 374 LFKDEVRLLGKELGLP 389


>gi|329957022|ref|ZP_08297590.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
 gi|328523779|gb|EGF50871.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
          Length = 435

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G +++ V      ++   S    +           
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLKAIGDNLVCVHVNHGLMRKGESEAVIEIFK-------- 191

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + +N +    D  +RF + +                 +     ++        
Sbjct: 192 -------NKLNANLVYVDATDRFLDKLAGVADPEQKRK------IIGGEFIRV--FEEEA 236

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R+L G D L  G        + + G +   M +           +    +    +L  PL
Sbjct: 237 RKLDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPL 286

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+GL 
Sbjct: 287 RQLFKDEVRACGLELGLP 304


>gi|323486116|ref|ZP_08091447.1| hypothetical protein HMPREF9474_03198 [Clostridium symbiosum
           WAL-14163]
 gi|323692975|ref|ZP_08107196.1| GMP synthase domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323400683|gb|EGA93050.1| hypothetical protein HMPREF9474_03198 [Clostridium symbiosum
           WAL-14163]
 gi|323502976|gb|EGB18817.1| GMP synthase domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 430

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V          +         + V +  R
Sbjct: 135 DRKVLLALSGGVDSSVVAALLIKAIGQQLVCVH--------VNHGLMRKNESESVIEVFR 186

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + ++ +    D  ERF      V  P              +     ++        R+
Sbjct: 187 --NQLHANLIYVDAAERFLGKLENVSDP---EQKRK------IIGGEFIRV--FEEEARK 233

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 234 LEGIDFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLKFELVEPLKQ 283

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 284 LFKDEVRACGLELGLP 299


>gi|254172603|ref|ZP_04879278.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermococcus
           sp. AM4]
 gi|214033532|gb|EEB74359.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermococcus
           sp. AM4]
          Length = 380

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 87/236 (36%), Gaps = 53/236 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V A L+ + G +VI V +                  + +   R++
Sbjct: 179 QGKVVALLSGGIDSPVAAFLMMKRGVEVIPVHI--------------YMGEKTLEKVRKI 224

Query: 80  CDTINVSHY-------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            + +   HY       V   + + R  ++         G+    CV C    KF  ++  
Sbjct: 225 WNQLKKYHYGGKAELIVV--KPKERERILEKLRE---LGKEKYTCVFC----KF-MMVRH 274

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             ++  D  A G      + +GD       + +      +  Y +   +   +     PL
Sbjct: 275 ADKIAKDFGAKG------IVMGD------SLGQVASQTLENMYIVSQASDLPIYR---PL 319

Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQ-----QGKYFDVVKRINAGIALE 242
             M KE +  +A+ +G  +++   +  +I F+      +G + +  K   A    E
Sbjct: 320 IGMDKEEIVSIAKRIGTFELSTLPE-DEIPFIPKHPIIRGSWEEFRKLYKAVFGEE 374


>gi|241999384|ref|XP_002434335.1| GMP synthase, putative [Ixodes scapularis]
 gi|215497665|gb|EEC07159.1| GMP synthase, putative [Ixodes scapularis]
          Length = 696

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 30/207 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +   +  VI + +     RK    +             
Sbjct: 239 NSKVLMLVSGGVDSTVCAALLHKALREDQVIALHIDNGFMRKEESVQVEQSL-------- 290

Query: 78  RVCDTINVSHYVFDYEERFRN---AV-IVPFASSYAAGETPLPCVDCN----RTVKFSDL 129
                + +   V D   +F N    V I P         T + C   +    R +     
Sbjct: 291 ---RQLGLRLRVVDASHQFYNGTTTVPIDP-REPQRKRTTRMLCQTAHPEEKRKIIGDTF 346

Query: 130 LSVTRQL--GADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQ 183
           + V  ++     +     ++       D  +    +     D  +   + +  +     +
Sbjct: 347 MRVANEVIGELQLNPEDVFLGQGTLRPDLIESASHLASGQADAIKTHHNDTDLVRQLRAK 406

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               +  PL D  K+ VR L R++GL 
Sbjct: 407 --GRVVEPLKDFHKDEVRALGRDLGLP 431


>gi|15923381|ref|NP_370915.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926092|ref|NP_373625.1| GMP synthase [Staphylococcus aureus subsp. aureus N315]
 gi|49482642|ref|YP_039866.1| GMP synthase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|148266876|ref|YP_001245819.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150392922|ref|YP_001315597.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156978719|ref|YP_001440978.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316508|ref|ZP_04839721.1| GMP synthase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730756|ref|ZP_04864921.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253735137|ref|ZP_04869302.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005187|ref|ZP_05143788.2| GMP synthase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424535|ref|ZP_05600964.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427202|ref|ZP_05603604.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429838|ref|ZP_05606225.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432541|ref|ZP_05608904.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435445|ref|ZP_05611496.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus M876]
 gi|257794224|ref|ZP_05643203.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9781]
 gi|258413490|ref|ZP_05681765.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9763]
 gi|258421387|ref|ZP_05684314.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9719]
 gi|258444369|ref|ZP_05692703.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A8115]
 gi|258444907|ref|ZP_05693228.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6300]
 gi|258448112|ref|ZP_05696241.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6224]
 gi|258455945|ref|ZP_05703900.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5937]
 gi|269202037|ref|YP_003281306.1| GMP synthase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893552|ref|ZP_06301785.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus A8117]
 gi|282902998|ref|ZP_06310891.1| GMP synthase [Staphylococcus aureus subsp. aureus C160]
 gi|282907394|ref|ZP_06315242.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907737|ref|ZP_06315579.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282912624|ref|ZP_06320420.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913249|ref|ZP_06321041.1| GMP synthase [Staphylococcus aureus subsp. aureus M899]
 gi|282915734|ref|ZP_06323504.1| GMP synthase [Staphylococcus aureus subsp. aureus D139]
 gi|282918197|ref|ZP_06325938.1| GMP synthase [Staphylococcus aureus subsp. aureus C427]
 gi|282922876|ref|ZP_06330566.1| guaA, GMP synthase [Staphylococcus aureus subsp. aureus C101]
 gi|282927446|ref|ZP_06335064.1| GMP synthase [Staphylococcus aureus A10102]
 gi|283768117|ref|ZP_06341032.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus H19]
 gi|283959850|ref|ZP_06377291.1| GMP synthase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293498299|ref|ZP_06666153.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509239|ref|ZP_06667957.1| GMP synthase [Staphylococcus aureus subsp. aureus M809]
 gi|293550504|ref|ZP_06673176.1| GMP synthase [Staphylococcus aureus subsp. aureus M1015]
 gi|295405663|ref|ZP_06815473.1| GMP synthase [Staphylococcus aureus A8819]
 gi|295426946|ref|ZP_06819585.1| GMP synthase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276083|ref|ZP_06858590.1| GMP synthase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245570|ref|ZP_06929438.1| GMP synthase [Staphylococcus aureus A8796]
 gi|297588839|ref|ZP_06947480.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus MN8]
 gi|54037236|sp|P99105|GUAA_STAAN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041333|sp|P64296|GUAA_STAAM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56749046|sp|Q6GJQ6|GUAA_STAAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739740|sp|A7WY93|GUAA_STAA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739741|sp|A6TYP2|GUAA_STAA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739742|sp|A5IPX0|GUAA_STAA9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13700305|dbj|BAB41603.1| GMP synthase [Staphylococcus aureus subsp. aureus N315]
 gi|14246159|dbj|BAB56553.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240771|emb|CAG39433.1| putative GMP synthase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|147739945|gb|ABQ48243.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945374|gb|ABR51310.1| GMP synthase, large subunit [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720854|dbj|BAF77271.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725600|gb|EES94329.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253726937|gb|EES95666.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273553|gb|EEV05655.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276833|gb|EEV08284.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280319|gb|EEV10906.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283420|gb|EEV13552.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257286041|gb|EEV16157.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus M876]
 gi|257788196|gb|EEV26536.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9781]
 gi|257839737|gb|EEV64206.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9763]
 gi|257842811|gb|EEV67233.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9719]
 gi|257850628|gb|EEV74576.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A8115]
 gi|257856225|gb|EEV79139.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6300]
 gi|257858627|gb|EEV81501.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6224]
 gi|257862157|gb|EEV84930.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5937]
 gi|262074327|gb|ACY10300.1| GMP synthase [Staphylococcus aureus subsp. aureus ED98]
 gi|282315097|gb|EFB45483.1| guaA, GMP synthase [Staphylococcus aureus subsp. aureus C101]
 gi|282317894|gb|EFB48262.1| GMP synthase [Staphylococcus aureus subsp. aureus C427]
 gi|282320363|gb|EFB50703.1| GMP synthase [Staphylococcus aureus subsp. aureus D139]
 gi|282323349|gb|EFB53668.1| GMP synthase [Staphylococcus aureus subsp. aureus M899]
 gi|282324320|gb|EFB54636.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282328642|gb|EFB58913.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330293|gb|EFB59814.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590770|gb|EFB95846.1| GMP synthase [Staphylococcus aureus A10102]
 gi|282597457|gb|EFC02416.1| GMP synthase [Staphylococcus aureus subsp. aureus C160]
 gi|282764238|gb|EFC04365.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus A8117]
 gi|283461996|gb|EFC09080.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus H19]
 gi|283789442|gb|EFC28269.1| GMP synthase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816113|gb|ADC36600.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus
           04-02981]
 gi|290919551|gb|EFD96627.1| GMP synthase [Staphylococcus aureus subsp. aureus M1015]
 gi|291097230|gb|EFE27488.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467991|gb|EFF10499.1| GMP synthase [Staphylococcus aureus subsp. aureus M809]
 gi|294969738|gb|EFG45757.1| GMP synthase [Staphylococcus aureus A8819]
 gi|295129398|gb|EFG59025.1| GMP synthase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297177556|gb|EFH36807.1| GMP synthase [Staphylococcus aureus A8796]
 gi|297577350|gb|EFH96063.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus MN8]
 gi|298693727|gb|ADI96949.1| GMP synthase [Staphylococcus aureus subsp. aureus ED133]
 gi|312436494|gb|ADQ75565.1| GMP synthase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312828911|emb|CBX33753.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130041|gb|EFT86030.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194874|gb|EFU25263.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|323439287|gb|EGA97012.1| GMP synthase [Staphylococcus aureus O11]
 gi|323442528|gb|EGB00156.1| GMP synthase [Staphylococcus aureus O46]
 gi|329725749|gb|EGG62228.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|154493619|ref|ZP_02032939.1| hypothetical protein PARMER_02959 [Parabacteroides merdae ATCC
           43184]
 gi|154086829|gb|EDN85874.1| hypothetical protein PARMER_02959 [Parabacteroides merdae ATCC
           43184]
          Length = 435

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 68/200 (34%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +   +      +
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLKAIGDKLVCVHVNHGLMRKGESENVVEVFKNQLNANLI 199

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLS 131
           Y                         V   F    A    P     +     ++      
Sbjct: 200 Y-----------------------KDVTDRFLDKLAGVADPEEKRKIIGGEFIRV--FEE 234

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             R+L G D LA G        + + G +   M +           +    +    +L  
Sbjct: 235 EARKLDGIDFLAQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLKFELVE 284

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR    E+GL 
Sbjct: 285 PLRQLFKDEVRACGLELGLP 304


>gi|15894062|ref|NP_347411.1| PP family ATPase [Clostridium acetobutylicum ATCC 824]
 gi|15023660|gb|AAK78751.1|AE007592_12 ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           acetobutylicum ATCC 824]
 gi|325508189|gb|ADZ19825.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           acetobutylicum EA 2018]
          Length = 271

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 75/219 (34%), Gaps = 59/219 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +VV+A SGGVDS+    LLK      G +V  VT+                   ++ +A 
Sbjct: 19  KVVLAFSGGVDST---FLLKASKEALGDNVKAVTI-----------LSPYIPKWEIREAE 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            +   + V H +          +  P   S        P   C  C   V FS +L   +
Sbjct: 65  ELVKELGVEHEI----------IKAPIIDSIK----FNPEDRCYLCKTAV-FSMILDAAK 109

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G D +  G          DD K  R   R +     +S  L                 
Sbjct: 110 RQGYDCVIDG-------TNFDDIKDYRPGLRALKELSVKSPLLE--------------CK 148

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           + K  +R  ++E+GL   DK      C + +  Y + +K
Sbjct: 149 LTKAEIRTFSKELGLKTWDKPPY--ACLLTRIPYGNELK 185


>gi|312137387|ref|YP_004004724.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311225106|gb|ADP77962.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 297

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 25/223 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD +++VA+SGG DS V+A +L + GY+  G+ + L            C         ++
Sbjct: 46  KDEKLLVAVSGGKDSLVLAYILNKLGYEFEGLHIDL----GIEDYSEMCKKSS-----KK 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   I +  ++   ++     +           +T  P        K   +       G 
Sbjct: 97  IFSEIGLPLHIVKIKKLLGRGI--------GEVKTRRPVCSYCGLTKRYIMNKFAYDNGF 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +ATGH +              I+   +D    Q   L A  + +      PL +++ +
Sbjct: 149 TAVATGHNLDDESAFVFSN----ILHWNIDYLSKQGPLLEA--EDKFVKKIKPLYELRDK 202

Query: 199 SVRDLA--REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            +   A   ++         ++    ++  K+ D++++ N GI
Sbjct: 203 EISLYASFAKIEHVTKKCKYARGATSIKYKKFLDILEKDNPGI 245


>gi|57652648|ref|YP_185351.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87160103|ref|YP_493103.1| GMP synthase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194173|ref|YP_498964.1| GMP synthase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151220593|ref|YP_001331415.1| GMP synthase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161508662|ref|YP_001574321.1| GMP synthase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141367|ref|ZP_03565860.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452995|ref|ZP_05700988.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5948]
 gi|262048950|ref|ZP_06021830.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus D30]
 gi|262052555|ref|ZP_06024751.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus 930918-3]
 gi|284023425|ref|ZP_06377823.1| GMP synthase [Staphylococcus aureus subsp. aureus 132]
 gi|294850039|ref|ZP_06790777.1| guaA [Staphylococcus aureus A9754]
 gi|304380398|ref|ZP_07363078.1| GMP synthase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|71152095|sp|Q5HIQ6|GUAA_STAAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122540206|sp|Q2G0Y6|GUAA_STAA8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123487241|sp|Q2FJM5|GUAA_STAA3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739743|sp|A6QE71|GUAA_STAAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739744|sp|A8Z0R1|GUAA_STAAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57286834|gb|AAW38928.1| GMP synthase [Staphylococcus aureus subsp. aureus COL]
 gi|87126077|gb|ABD20591.1| GMP synthase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87201731|gb|ABD29541.1| GMP synthase, putative [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373393|dbj|BAF66653.1| glutamine-hydrolyzing GMP synthase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160367471|gb|ABX28442.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257859205|gb|EEV82060.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5948]
 gi|259159536|gb|EEW44584.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus 930918-3]
 gi|259163022|gb|EEW47584.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus D30]
 gi|269939968|emb|CBI48341.1| putative GMP synthase [Staphylococcus aureus subsp. aureus TW20]
 gi|294823173|gb|EFG39604.1| guaA [Staphylococcus aureus A9754]
 gi|302750282|gb|ADL64459.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304341073|gb|EFM06993.1| GMP synthase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198075|gb|EFU28407.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139299|gb|EFW31178.1| GMP synthase protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142849|gb|EFW34645.1| GMP synthase protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313107|gb|AEB87520.1| GMP synthase [Staphylococcus aureus subsp. aureus T0131]
 gi|329724256|gb|EGG60769.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|22299961|ref|NP_683208.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermosynechococcus elongatus BP-1]
 gi|44887998|sp|Q8DGA5|GUAA_THEEB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|22296146|dbj|BAC09970.1| GMP synthetase [Thermosynechococcus elongatus BP-1]
          Length = 535

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG       ++     
Sbjct: 231 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLLKLFQ---- 282

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +  ++     +  +RF   ++                   +  ++       +++LG  
Sbjct: 283 -EQFHIKVEYVNARDRFLAQLVGVTDPEEKRKR------IGHEFIRV--FEEESQRLGPF 333

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   +     +   R     +   + +    +     L  PL  + K+
Sbjct: 334 DYLAQGTLYPDVIESANTNIDPQTGERVAVKIKSH-HNVGGLPENLRFKLVEPLRKLFKD 392

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 393 EVRQVGRSLGLP 404


>gi|302332128|gb|ADL22321.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 513

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 30/199 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + +   D RV+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQ 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  N++    + ++RF N +                 V       F D   
Sbjct: 268 F-------GEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYV-----FDD--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++  G D LA G        V + G +     +           +    +    +L  P
Sbjct: 314 ASKLKGVDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR L  E+G+ 
Sbjct: 364 INTLFKDEVRKLGIELGIP 382


>gi|169335396|ref|ZP_02862589.1| hypothetical protein ANASTE_01808 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258134|gb|EDS72100.1| hypothetical protein ANASTE_01808 [Anaerofustis stercorihominis DSM
           17244]
          Length = 515

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         D   
Sbjct: 217 NGKVLCALSGGVDSSVAAVMLAKAVGKQLTCVF---VDHGLLRKNEGDEVEAVFGPDG-- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                +++    + ++RF +           AG T     +  R +             +
Sbjct: 272 ---PYDLNFIRANVQQRFYDK---------LAGVT---DPETKRKIIGEEFIRVFEEEAK 316

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++G  D L  G      +  G D          +    D   F          ++  PL 
Sbjct: 317 KIGTVDFLVQGTIYPDVVESGLDKSAVIKSHHNVGGLPDYVDF---------KEIIEPLR 367

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR   +E+G+ 
Sbjct: 368 DLFKDEVRKAGKELGIP 384


>gi|256851985|ref|ZP_05557372.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260661445|ref|ZP_05862358.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           115-3-CHN]
 gi|282931707|ref|ZP_06337195.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
 gi|297205144|ref|ZP_06922540.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii
           JV-V16]
 gi|256615397|gb|EEU20587.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260547900|gb|EEX23877.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           115-3-CHN]
 gi|281304150|gb|EFA96264.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
 gi|297149722|gb|EFH30019.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii
           JV-V16]
          Length = 516

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   L    + K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 203 TMDDFIDLEVERIRKQVGDGKVILGLSGGVDSSVTATLLHKAIGNQLTAIF---VDHGLL 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +          D       + V+    D ++RF +            G T  P    
Sbjct: 260 RKDEAKQVMEALNRD-------LGVNIIKVDAQKRFLDK---------LKGVT-EPEQKR 302

Query: 121 NRTVK--FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
               K          ++L G   LA G        V + G +     +           +
Sbjct: 303 KIIGKEFIEVFNEEAKKLDGVKFLAQG---TLYTDVIESGTKTAQTIKSHHN-------V 352

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 353 GGLPKDLGFELVEPLRKLFKDEVRELGEKLGIP 385


>gi|291542781|emb|CBL15891.1| GMP synthase (glutamine-hydrolyzing) [Ruminococcus bromii L2-63]
          Length = 517

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 51/211 (24%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
            L +   D  VV+ +SGGVDSSV AALL +  G  +  V      ++     +    + +
Sbjct: 214 QLKEQIGDKGVVLGLSGGVDSSVAAALLSKAVGKQLTCVFVDQGLMR---KDEGDFVEQT 270

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK- 125
                D+   R             + +E F         +     E P       R +  
Sbjct: 271 FTKLFDMNFVR------------INCQEEF--------LAKLKGVEEPEE----KRHIIG 306

Query: 126 ---FSDLLSVTRQ-LGADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
              +    +  R+  G    A G  +  R     GD  K +           +Q      
Sbjct: 307 TEFYKVFWNKIRESYGEGYFAQGTIYPDRIESGKGDAAKIKTHH--------NQVGIPED 358

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                   +  PL D+ K+ VR +  ++GL 
Sbjct: 359 ID---FAGVIEPLKDLFKDEVRVVGEKLGLP 386


>gi|269797341|ref|YP_003311241.1| NAD+ synthetase [Veillonella parvula DSM 2008]
 gi|269093970|gb|ACZ23961.1| NAD+ synthetase [Veillonella parvula DSM 2008]
          Length = 255

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          VV +SGG DS++VAAL K   G + V+GV +                   D+ DA+ V +
Sbjct: 30 VVGISGGKDSTIVAALCKEALGANRVVGVLMPN-------------GVQSDIDDAQAVVN 76

Query: 82 TINVSHYVFDYEERFR 97
           + + H   +    + 
Sbjct: 77 HLGIPHMTVNIGAAYE 92


>gi|255308638|ref|ZP_05352809.1| putative ATPase [Clostridium difficile ATCC 43255]
          Length = 244

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D D   ++ ++ V +SGG DS  +  +LK         +++I +TL            G 
Sbjct: 16  DFDMIQENDKIAVGLSGGKDSLTLLHILKSYQRFSPQNFELIAITL---------NTGGV 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             +  D     ++C  INV  Y       F+  +               PC  C   ++ 
Sbjct: 67  DNSPLD-----KLCKEINVPFY------EFQTDIKEIVFDIRQE---KNPCALC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L    ++LG + +A GH+
Sbjct: 112 GALNDNAKKLGCNKVALGHH 131


>gi|254977231|ref|ZP_05273703.1| putative ATPase [Clostridium difficile QCD-66c26]
 gi|255094560|ref|ZP_05324038.1| putative ATPase [Clostridium difficile CIP 107932]
 gi|255316315|ref|ZP_05357898.1| putative ATPase [Clostridium difficile QCD-76w55]
 gi|255518975|ref|ZP_05386651.1| putative ATPase [Clostridium difficile QCD-97b34]
 gi|255652155|ref|ZP_05399057.1| putative ATPase [Clostridium difficile QCD-37x79]
 gi|260685123|ref|YP_003216408.1| putative ATPase [Clostridium difficile CD196]
 gi|260688781|ref|YP_003219915.1| putative ATPase [Clostridium difficile R20291]
 gi|260211286|emb|CBA66853.1| putative ATPase [Clostridium difficile CD196]
 gi|260214798|emb|CBE07529.1| putative ATPase [Clostridium difficile R20291]
          Length = 244

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D D   ++ ++ V +SGG DS  +  +LK         +++I +TL            G 
Sbjct: 16  DFDMIQENDKIAVGLSGGKDSLTLLHILKSYQRFSPQNFELIAITL---------NTGGV 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             +  D     ++C  INV  Y       F+  +               PC  C   ++ 
Sbjct: 67  DNSPLD-----KLCKEINVPFY------EFQTDIKEIVFDIRQE---KNPCALC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L    ++LG + +A GH+
Sbjct: 112 GALNDNAKKLGCNKVALGHH 131


>gi|126701229|ref|YP_001090126.1| putative ATPase [Clostridium difficile 630]
 gi|255102819|ref|ZP_05331796.1| putative ATPase [Clostridium difficile QCD-63q42]
 gi|115252666|emb|CAJ70509.1| putative ATPase [Clostridium difficile]
          Length = 244

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D D   ++ ++ V +SGG DS  +  +LK         +++I +TL            G 
Sbjct: 16  DFDMIQENDKIAVGLSGGKDSLTLLHILKSYQRFSPQNFELIAITL---------NTGGV 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             +  D     ++C  INV  Y       F+  +               PC  C   ++ 
Sbjct: 67  DNSPLD-----KLCKEINVPFY------EFQTDIKEIVFDIRQE---KNPCALC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L    ++LG + +A GH+
Sbjct: 112 GALNDNAKKLGCNKVALGHH 131


>gi|328949749|ref|YP_004367084.1| NH(3)-dependent NAD(+) synthetase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450073|gb|AEB10974.1| NH(3)-dependent NAD(+) synthetase [Marinithermus hydrothermalis DSM
           14884]
          Length = 282

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 62/198 (31%), Gaps = 56/198 (28%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VVA+SGGVDS+   AL  R  G + V  +                    + +  AR 
Sbjct: 38  TKAVVAVSGGVDSATTLALAVRALGPENVHAL-----------ALPHRDSRPESLEHARL 86

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR------TVKFSDLLSV 132
           V  T  V+  V D         I P    YAA     P +  +R        +   L   
Sbjct: 87  VAQTFGVALEVVD---------ITPMVEGYAAQT---PDLTPHRKGNVMARCRMIVLFDK 134

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +    A  L TG+                             YF +            PL
Sbjct: 135 SMAYHALPLGTGNKTERLFG----------------------YFTWNADDTPP---VNPL 169

Query: 193 GDMKKESVRDLAREMGLD 210
           GD+ K  V  LAR +G+ 
Sbjct: 170 GDLYKTQVWALARYLGVP 187


>gi|258593162|emb|CBE69483.1| NH(3)-dependent NAD(+) synthetase [NC10 bacterium 'Dutch sediment']
          Length = 273

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 42/190 (22%)

Query: 22  RVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+ +SGGVDS++ A L  K  G + +      +    A        + +    A  V 
Sbjct: 30  RVVIGLSGGVDSALSAYLGAKALGAENV------W----ALLMPYKTSSPESREHAELVV 79

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V D         I P   +Y     P         V+  + ++  R      
Sbjct: 80  KQLRIQSDVID---------ITPMVDAYFE-RFPESD-----HVRRGNKMARERM----T 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +   H  + +  V     +  ++              + T    +     PLGD+ K  V
Sbjct: 121 ILFDHSAKLKALVLGTSNKTELLL------------GYGTLYGDMASAINPLGDLYKTQV 168

Query: 201 RDLAREMGLD 210
           R LA  MG+ 
Sbjct: 169 RQLACYMGIP 178


>gi|254469025|ref|ZP_05082431.1| GMP synthase [beta proteobacterium KB13]
 gi|207087835|gb|EDZ65118.1| GMP synthase [beta proteobacterium KB13]
          Length = 496

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 73/216 (33%), Gaps = 55/216 (25%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQ--LYNSRKASK----RKG 65
           D+     D  V++ +SGGVDSSV AALL R  G  +  + +   L    +A+K     K 
Sbjct: 191 DIKNQVHDEHVILGLSGGVDSSVAAALLHRAIGDQLTCIFVDHGLLRKDEATKVLSLFKE 250

Query: 66  SCCAGQDVYDA-RRVCDTI-NV-------SHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           +        DA ++  D +  +            ++ E F++       + + A  T  P
Sbjct: 251 NLGVKVIHVDATKKFMDDLKGIDDPEEKRKIIGRNFVEVFQDESKKITNAKWLAQGTIYP 310

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V  +   K                  GH I+S   VG                      
Sbjct: 311 DVIESAGGKTKK---------------GHNIKSHHNVG---------------------- 333

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
                +     L  PL ++ K+ VR L   +GL   
Sbjct: 334 --GLPETLHLKLLEPLRELFKDEVRKLGVALGLPNH 367


>gi|168703909|ref|ZP_02736186.1| hypothetical protein GobsU_30530 [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 68/195 (34%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGG+DS+VVA              L L     A        A  ++ DAR +   
Sbjct: 31  VAVAFSGGIDSTVVAK----------AAHLALGTRAVAVTADSPSVARNELRDARELAKL 80

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H V    + FRN         Y        C  C   + ++ + S+  +L   ++A
Sbjct: 81  IGIRHVVV-RTDEFRN-------PDYTK-NDGSRCYHCKTEL-YTTVESILPELEVSIIA 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
           +G        + D G  R  +    +                   +R PL D    K  V
Sbjct: 131 SG------ANLDDRGDYRPGLLAAAEHS-----------------VRHPLQDAGFTKADV 167

Query: 201 RDLAREMGLDIADKS 215
           R LAR  GL   DK 
Sbjct: 168 RALARFWGLPTWDKP 182


>gi|163741128|ref|ZP_02148520.1| GMP synthase [Phaeobacter gallaeciensis 2.10]
 gi|161385481|gb|EDQ09858.1| GMP synthase [Phaeobacter gallaeciensis 2.10]
          Length = 522

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V     +     K +    A + V   R 
Sbjct: 224 DKQVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGLLRKNE----AEEVVTMFR- 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D +E F                 P       R +     + V ++   
Sbjct: 276 --DNYNIQLIHADEQELF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAN 321

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 322 TIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 374

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 375 ELFKDEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 413


>gi|145234420|ref|XP_001400581.1| GMP synthase [glutamine-hydrolyzing] [Aspergillus niger CBS 513.88]
 gi|134057527|emb|CAK48881.1| unnamed protein product [Aspergillus niger]
          Length = 539

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 65/203 (32%), Gaps = 40/203 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VC 80
            V+ A+SGGVDS+V A L+K      IG      +   A      C    +       + 
Sbjct: 232 HVLGAVSGGVDSTVAAKLMKEA----IG------DRFHAVLVNNGCMRLNECDIVEETLN 281

Query: 81  DTINVSHYVFDYEERFRN---AVIVP----------FASSYAAGETPLPCVDCNRTVKFS 127
             + ++  V D  +RF +    V  P          F   +      +     ++  K  
Sbjct: 282 KHLGINLTVVDASKRFLDGLKGVTEPEKKRKFIGNTFIDVFEEEAQKIEAEAEHQGAKVK 341

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L  T             I S  + G     +         +R            Q   
Sbjct: 342 WFLQGTL--------YPDVIESISFKGPSATIKTHHNVGGLPQR--------MIDGQGMR 385

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR L R++G+ 
Sbjct: 386 LIEPLRELFKDEVRALGRQLGIA 408


>gi|57233965|ref|YP_181972.1| argininosuccinate synthase [Dehalococcoides ethenogenes 195]
 gi|119361269|sp|Q3Z727|ASSY_DEHE1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|57224413|gb|AAW39470.1| argininosuccinate synthase [Dehalococcoides ethenogenes 195]
          Length = 406

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S     L+   G DVI VT+ + N +  +  K           A +V 
Sbjct: 4   KVVLAYSGGLDTSAAVKWLQEKYGMDVIAVTIDVGNEKDFTLIK---------EKALKVG 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F    I     + +  E   P      R +    ++ +  + GA 
Sbjct: 55  AK---KAYVRDVRKEFAEDYIWKAIKANSMYEGVYPLATALARPLIAKVMVDIAMEEGAT 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--GD 194
            +A G                          +      F      L     +  P     
Sbjct: 112 AIAHG-----------------------CTGKGNDQVRFDVGINTLAPHLKIIAPARQWG 148

Query: 195 MKKESVRDLAREMGLDIA 212
           M +E   + A++ G+ + 
Sbjct: 149 MTREQTMEYAQKWGIPVP 166


>gi|313902361|ref|ZP_07835765.1| argininosuccinate synthase [Thermaerobacter subterraneus DSM 13965]
 gi|313467409|gb|EFR62919.1| argininosuccinate synthase [Thermaerobacter subterraneus DSM 13965]
          Length = 419

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    LK   GYDVI +                   G+D+   R+  
Sbjct: 4   KIVLAYSGGLDTSVAIPWLKETYGYDVIAL-------------SADVGEGKDLDFIRQKA 50

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  V   V D  ERF    ++P   + A  +   P     +R +    L+   RQ GA
Sbjct: 51  LQVGAVEAVVVDARERFARDFVLPALQANALYQGRYPLSAALSRPLIAQLLVETARQYGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAVAHG 116


>gi|251771982|gb|EES52554.1| thiamine biosynthesis protein [Leptospirillum ferrodiazotrophum]
          Length = 344

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 91/279 (32%), Gaps = 44/279 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS++   LL+R G +++ + L         +    C +      A  +   I
Sbjct: 5   VLLLSGGLDSTLSGLLLRRMGVELVALHL---------ESPFGCDS-----MAETMAKEI 50

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +   V    E F + +  P    Y  G    PCVDC   + F    S   ++GA  L T
Sbjct: 51  GIPLVVRPKGEAFLDMLGHP---RYGYGSAMNPCVDCRIHM-FRMGRSFMEEVGASFLVT 106

Query: 144 GHYIRSRLY---------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  +  R           +  D     ++ RP+                    L    G 
Sbjct: 107 GEVLGQRPMSQKKRAIVSIDADSGMEGLVLRPLSARLLPETLPERDGTVDRKKLFGWAGR 166

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN---GQ 251
            +K  +  LA  +GL           C +    + D +          GD V ++    +
Sbjct: 167 SRKPQL-ALAARLGLSTIPSP--AGGCLLTDSHFNDRI----------GDFVRIDWSTEK 213

Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290
             G     +   +   R      GE   VV      +R 
Sbjct: 214 EAGSRREAVASILRYGRHFRFEEGE-WVVVGRSLEDNRN 251


>gi|68535922|ref|YP_250627.1| argininosuccinate synthase [Corynebacterium jeikeium K411]
 gi|260577982|ref|ZP_05845906.1| argininosuccinate synthase [Corynebacterium jeikeium ATCC 43734]
 gi|119361267|sp|Q4JVZ8|ASSY_CORJK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|68263521|emb|CAI37009.1| argG [Corynebacterium jeikeium K411]
 gi|258603872|gb|EEW17125.1| argininosuccinate synthase [Corynebacterium jeikeium ATCC 43734]
          Length = 398

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 37/203 (18%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV+A SGG+D++V    + K    +V+ V++ L               G+D+   R+
Sbjct: 2   KDRVVLAYSGGLDTTVAISWIAKERNAEVVCVSIDL------------GQGGEDMETVRQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  + F N   +P   +        P V   +R +    +    ++ 
Sbjct: 50  RALGAGAVESIVVDARDEFANDYCLPTIKANGMYMKEYPLVSAISRPLIVKHMADAAKEH 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
           G   +A G                    +  D  R +  F       ++     P+ D  
Sbjct: 110 GGTAVAHG-----------------CTGKGNDQVRFEVGFANTAPDLEI---IAPVRDYA 149

Query: 196 -KKESVRDLAREMGLDIADKSDS 217
             +E     A E G+ I     S
Sbjct: 150 WTREKAIAFAEENGIPIEQSKSS 172


>gi|163736337|ref|ZP_02143756.1| GMP synthase [Phaeobacter gallaeciensis BS107]
 gi|161390207|gb|EDQ14557.1| GMP synthase [Phaeobacter gallaeciensis BS107]
          Length = 522

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V     +     K +    A + V   R 
Sbjct: 224 DKQVICGLSGGVDSSVAAILIHEAIGDQLTCVF---VDHGLLRKNE----AEEVVTMFR- 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D +E F                 P       R +     + V ++   
Sbjct: 276 --DNYNIQLIHADEQELF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAN 321

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 322 TIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 374

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 375 ELFKDEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 413


>gi|198283571|ref|YP_002219892.1| GMP synthase large subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666576|ref|YP_002426196.1| GMP synthase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248092|gb|ACH83685.1| GMP synthase, large subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518789|gb|ACK79375.1| GMP synthase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 514

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+ A+SGGVDS+V   L+ R  G  +  + +                      +A +
Sbjct: 217 KGRVIAALSGGVDSAVAVVLIHRAIGDQLTCIFVDN--------------GLLRFGEAEK 262

Query: 79  VC----DTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     +   +   V D  +RF +    V  P     A G                    
Sbjct: 263 VATVFRNYFQIPLQVVDARQRFLDVLADVTDPEKKRKAIGNLF-----------IEIFEE 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++ L GAD LA G  +   +      K      +           +    ++    L  
Sbjct: 312 ESKHLEGADFLAQG-TLYPDVIESISFKGPSATIKSHHN-------VGGLPERMRLQLVE 363

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L RE+G+ 
Sbjct: 364 PLRELFKDEVRELGRELGMP 383


>gi|319400089|gb|EFV88325.1| ATP-utilizing enzyme of the PP-loop superfamily [Staphylococcus
           epidermidis FRI909]
          Length = 275

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 43/212 (20%)

Query: 7   TRLNSLDL--DKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           T LN+ ++  D   KDM+ VV+A SGGVDSS    LLK+   DV+GV     N  K    
Sbjct: 2   TELNTKEMKLDALLKDMQSVVIAFSGGVDSS---LLLKKA-IDVLGV-----NYVKPVVV 52

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           K      ++   A ++  ++ V     +  E     ++     S+            ++ 
Sbjct: 53  KSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTLESW----------YYSKR 102

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           + +S L ++  +LG + +  G        + DD    R   +  D            +  
Sbjct: 103 LMYSQLENIKNKLGFNYVLDG-------MIMDDLDDFRPGLKARDD-------FGVRSVL 148

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           Q   L        K  VR+L+ +  L + +K 
Sbjct: 149 QEAKLY-------KSEVRELSHQHDLPVWNKP 173


>gi|15921795|ref|NP_377464.1| argininosuccinate synthase [Sulfolobus tokodaii str. 7]
 gi|30172928|sp|Q970V0|ASSY_SULTO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|15622582|dbj|BAB66573.1| 390aa long hypothetical argininosuccinate synthase [Sulfolobus
           tokodaii str. 7]
          Length = 390

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 40/201 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++V+A SGG+D++V    LK     DVI VT                    +  D  + 
Sbjct: 1   MKIVLAYSGGLDTTVAIRWLKETFNADVITVT-------------VDVGQKDNFEDIEKR 47

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                   HY  D ++ F +  I       A  E   P      R +    ++ + ++  
Sbjct: 48  AYIAGATKHYTIDAKKEFADNFISYAIKMNALYEDVYPLSTALARPLIAQKVVEIAKKEK 107

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFP--LGD 194
            D +A G                           DQ  F  A         +  P  + +
Sbjct: 108 VDYIAHG---------------------STSKGNDQVRFDLAVKALYPEAKIIAPARIWN 146

Query: 195 MKKESVRDLAREMGLDIADKS 215
           M +E   + A+  G+ I  +S
Sbjct: 147 MTREKEIEFAKARGIPIKTES 167


>gi|22125262|ref|NP_668685.1| GMP synthase [Yersinia pestis KIM 10]
 gi|45442508|ref|NP_994047.1| GMP synthase [Yersinia pestis biovar Microtus str. 91001]
 gi|108808305|ref|YP_652221.1| GMP synthase [Yersinia pestis Antiqua]
 gi|108811431|ref|YP_647198.1| GMP synthase [Yersinia pestis Nepal516]
 gi|145599487|ref|YP_001163563.1| GMP synthase [Yersinia pestis Pestoides F]
 gi|149365330|ref|ZP_01887365.1| putative GMP synthase [Yersinia pestis CA88-4125]
 gi|162420748|ref|YP_001605014.1| GMP synthase [Yersinia pestis Angola]
 gi|165925969|ref|ZP_02221801.1| GMP synthase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937037|ref|ZP_02225602.1| GMP synthase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008131|ref|ZP_02229029.1| GMP synthase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212257|ref|ZP_02238292.1| GMP synthase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398814|ref|ZP_02304338.1| GMP synthase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421428|ref|ZP_02313181.1| GMP synthase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423295|ref|ZP_02315048.1| GMP synthase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218929930|ref|YP_002347805.1| GMP synthase [Yersinia pestis CO92]
 gi|229838446|ref|ZP_04458605.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895147|ref|ZP_04510323.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Pestoides A]
 gi|229899013|ref|ZP_04514157.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901691|ref|ZP_04516813.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Nepal516]
 gi|270489885|ref|ZP_06206959.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Yersinia pestis KIM D27]
 gi|294504567|ref|YP_003568629.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis Z176003]
 gi|24211757|sp|Q8ZCU4|GUAA_YERPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123072717|sp|Q1C5J6|GUAA_YERPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123073463|sp|Q1CK82|GUAA_YERPN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739773|sp|A9R7Z2|GUAA_YERPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739774|sp|A4TMS8|GUAA_YERPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21958134|gb|AAM84936.1|AE013739_2 GMP synthetase (glutamine-hydrolyzing) [Yersinia pestis KIM 10]
 gi|45437373|gb|AAS62924.1| putative GMP synthase [Yersinia pestis biovar Microtus str. 91001]
 gi|108775079|gb|ABG17598.1| GMP synthase (glutamine-hydrolyzing) [Yersinia pestis Nepal516]
 gi|108780218|gb|ABG14276.1| GMP synthase (glutamine-hydrolyzing) [Yersinia pestis Antiqua]
 gi|115348541|emb|CAL21481.1| putative GMP synthase [Yersinia pestis CO92]
 gi|145211183|gb|ABP40590.1| GMP synthase (glutamine-hydrolyzing) [Yersinia pestis Pestoides F]
 gi|149291743|gb|EDM41817.1| putative GMP synthase [Yersinia pestis CA88-4125]
 gi|162353563|gb|ABX87511.1| GMP synthase [Yersinia pestis Angola]
 gi|165914900|gb|EDR33512.1| GMP synthase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922173|gb|EDR39350.1| GMP synthase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992513|gb|EDR44814.1| GMP synthase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206188|gb|EDR50668.1| GMP synthase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960917|gb|EDR56938.1| GMP synthase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051318|gb|EDR62726.1| GMP synthase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057465|gb|EDR67211.1| GMP synthase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229681620|gb|EEO77714.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Nepal516]
 gi|229687958|gb|EEO80030.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694812|gb|EEO84859.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701909|gb|EEO89932.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Pestoides A]
 gi|262362438|gb|ACY59159.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis D106004]
 gi|262366555|gb|ACY63112.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis D182038]
 gi|270338389|gb|EFA49166.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Yersinia pestis KIM D27]
 gi|294355026|gb|ADE65367.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis Z176003]
 gi|320016003|gb|ADV99574.1| GMP synthase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 525

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   D  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                        D   ++      E+RF             +  T +   +  R +   
Sbjct: 279 -------------DKFGLNIVHVAAEDRF------------LSALTGVDEPEAKRKIIGR 313

Query: 126 -FSDLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            F +L      +Q     LA G      +        +  + +           +    +
Sbjct: 314 VFVELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPK 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL ++ K+ VR +  E+GL 
Sbjct: 367 EMKLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|307325477|ref|ZP_07604679.1| argininosuccinate synthase [Streptomyces violaceusniger Tu 4113]
 gi|306888946|gb|EFN19930.1| argininosuccinate synthase [Streptomyces violaceusniger Tu 4113]
          Length = 398

 Score = 60.2 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 66/202 (32%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                +   V D ++ F     +P   + A      P V   +R      L++  R+ GA
Sbjct: 52  LACGAIEAEVADAKDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKHLVAAARKHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL-RFPLGDMKK 197
             +A G                   C       DQ  F    +          P+ D   
Sbjct: 112 GTVAHG-------------------CTGK--GNDQVRFEAGISSLAPDLTCIAPVRDYAM 150

Query: 198 ESVRDLA--REMGLDIADKSDS 217
              R +A     GL IA    S
Sbjct: 151 TRDRAIAFCEAEGLPIATTKKS 172


>gi|227833170|ref|YP_002834877.1| Argininosuccinate synthase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184155|ref|ZP_06043576.1| argininosuccinate synthase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454186|gb|ACP32939.1| Argininosuccinate synthase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 404

 Score = 60.2 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G +VI V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGEVIAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   +        P V   +R +    L+   +  G 
Sbjct: 52  LDCGAVESIVVDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAAQAHG- 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
                 H        G+D  R  +  R +D   +               +  P  D    
Sbjct: 111 ----GTHVSHGCTGKGNDQVRFEVSFRALDPALE---------------IIAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I   + S
Sbjct: 152 RDKAIAFAEEINLPIEQSAAS 172


>gi|126736304|ref|ZP_01752046.1| GMP synthase [Roseobacter sp. CCS2]
 gi|126714125|gb|EBA10994.1| GMP synthase [Roseobacter sp. CCS2]
          Length = 519

 Score = 60.2 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 71/234 (30%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDSSV AALL    G  +  V                      + +A  
Sbjct: 221 DAHVICALSGGVDSSVAAALLHEAIGDQLTCVF--------------VDHGLLRLNEAEE 266

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D +N+     D  + F                 P         +          
Sbjct: 267 VVGMFRDNMNLKVIHADESDLF--------LGELEGQSDPETKRKIIGKLFIDVFQKYAD 318

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           Q+  A  LA G      +          +  +           +    ++    L  PL 
Sbjct: 319 QIEDAAFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 371

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 372 ELFKDEVRALGVELGLPKS---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|126274941|ref|XP_001387008.1| argininosuccinate synthetase [Scheffersomyces stipitis CBS 6054]
 gi|126212877|gb|EAZ62985.1| argininosuccinate synthetase [Pichia stipitis CBS 6054]
          Length = 416

 Score = 60.2 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L  +GY+VI   L                  +D   A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEEGYEVIA-FLANI------------GQEEDFEAAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F  +V  P   +       Y  G +    V     +K     
Sbjct: 49  KALAIGATKFVVVDVRKEFVESVCFPAIQANAIYENVYLLGTSLARPVIAQAQIK----- 103

Query: 131 SVTRQLGADVLATG 144
            V  + G   ++ G
Sbjct: 104 -VAEENGCFAVSHG 116


>gi|193075070|gb|ACF08537.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 60.2 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 81  KVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF----------- 129

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 130 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 174

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 175 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 227

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+G+ 
Sbjct: 228 LRELFKDEVRKIGLELGVP 246


>gi|307354724|ref|YP_003895775.1| NAD+ synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157957|gb|ADN37337.1| NAD+ synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 248

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 47/194 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            R+V+ +SGG+DS++   L  +   G +V G  L                  +D  D   
Sbjct: 27  KRIVIGISGGIDSALAGVLSSKAIGGENVYGYFL-----------PSDVTPEKDKEDVED 75

Query: 79  VCDTINVSHYVFDYEERFR--NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +C+   ++  +       R    +     + Y  G   +        ++ + L       
Sbjct: 76  LCNKFGINLAIVPISSILRSFETISGYTETKYLKGNLMV-------RIRMTLLYYYAN-- 126

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                     +   L  G   K   I+              + T          PL  + 
Sbjct: 127 ----------LNDGLVCGTSNKTEYIL-------------GYCTKHGDEAADIQPLLHLY 163

Query: 197 KESVRDLAREMGLD 210
           K  VR LA+E G+ 
Sbjct: 164 KTDVRRLAKEAGVP 177


>gi|300813651|ref|ZP_07093973.1| NAD+ synthase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512193|gb|EFK39371.1| NAD+ synthase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 242

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 43/197 (21%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGG+DS+VVA L K           +++                D  DA ++  ++++
Sbjct: 32  GLSGGIDSAVVAGLAK-----------RVFPENSLGLIMPCDSIDDDKNDALKIAKSLDL 80

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
              V D    +   +   F S      +     +    ++ + L    + LG   L  G 
Sbjct: 81  EVKVVDLTNTYNELLKASFTSENKLARS-----NIKPRLRMTTLYYYGQDLG--YLVVGP 133

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
              S  YVG   K         D   D                 +P+ ++ K  +  LA+
Sbjct: 134 SNGSEWYVGYSTKY-------GDSGAD----------------IYPIANILKTDIFKLAK 170

Query: 206 EMGLD--IADKSDSQDI 220
            + L   I +K  S  +
Sbjct: 171 ALDLPDFIIEKKPSAGL 187


>gi|282881835|ref|ZP_06290488.1| NAD+ synthetase [Peptoniphilus lacrimalis 315-B]
 gi|281298327|gb|EFA90770.1| NAD+ synthetase [Peptoniphilus lacrimalis 315-B]
          Length = 239

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 43/197 (21%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGG+DS+VVA L K           +++                D  DA ++  ++++
Sbjct: 29  GLSGGIDSAVVAGLAK-----------RVFPENSLGLIMPCDSIDDDKNDALKIAKSLDL 77

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
              V D    +   +   F S      +     +    ++ + L    + LG   L  G 
Sbjct: 78  EVKVVDLTNTYNELLKASFTSENKLARS-----NIKPRLRMTTLYYYGQDLG--YLVVGP 130

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
              S  YVG   K         D   D                 +P+ ++ K  +  LA+
Sbjct: 131 SNGSEWYVGYSTKY-------GDSGAD----------------IYPIANILKTDIFKLAK 167

Query: 206 EMGLD--IADKSDSQDI 220
            + L   I +K  S  +
Sbjct: 168 ALDLPDFIIEKKPSAGL 184


>gi|194467107|ref|ZP_03073094.1| GMP synthase, large subunit [Lactobacillus reuteri 100-23]
 gi|194454143|gb|EDX43040.1| GMP synthase, large subunit [Lactobacillus reuteri 100-23]
          Length = 517

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 38/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   +   ++ K   D +V++ +SGGVDSSV A L+ +  G  +  +          
Sbjct: 204 TMDDFIDMQIDEIRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIF--------V 255

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                       V DA  +   + V+    D  +RF              G T     + 
Sbjct: 256 DHGLLRKNEANQVMDA--LSRDLGVNIIKVDAADRFLGK---------LEGVT---DPEQ 301

Query: 121 NRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +   + + V     +++  AD LA G      +  G D  +     +          
Sbjct: 302 KRKIIGKEFIEVFNEEAKKIKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN------ 352

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 353 -VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 386


>gi|90962508|ref|YP_536424.1| GMP synthase [Lactobacillus salivarius UCC118]
 gi|122448520|sp|Q1WRY8|GUAA_LACS1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|90821702|gb|ABE00341.1| GMP synthase [Lactobacillus salivarius UCC118]
          Length = 518

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           + +   +    + +   D +V++ +SGGVDSSVV  LL +  G  +  +           
Sbjct: 206 MDDFIDMQIQKIRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGNQLTSIF-----VDHGL 260

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            RKG          A +V D++     ++    D +ERF N +                 
Sbjct: 261 LRKGE---------AEQVMDSLGGKFGLNIIKVDAKERFLNKLAGVSDPEKKRK------ 305

Query: 118 VDCNRTVK-FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           +  N  ++ F D     +  G + LA G      +  G D  +     +           
Sbjct: 306 IIGNEFIRVFDD--ESAKLEGIEFLAQGTLYTDIIESGTDTAQT---IKSHHN------- 353

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 354 VGGLPEDVQFKLIEPLNTLFKDEVRELGEKLGMP 387


>gi|330685228|gb|EGG96890.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU121]
          Length = 513

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  N++    + ++RF   +                 V       F D    ++  G
Sbjct: 269 --GEGFNMNIIRVNAQDRFMKKLAGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|322829891|gb|EFZ33128.1| GMP synthase, putative [Trypanosoma cruzi]
          Length = 686

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 42/217 (19%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++  +  +V+   SGGVDS+V A LL +  G + V+ V      ++L  + +        
Sbjct: 245 ERTAQGQKVLCLASGGVDSTVCAVLLLKALGPERVVCVHIDHGFMRLRETEEVVA----- 299

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVK- 125
                   A R      VS +V D   +F  A    P     A   T   C   +   K 
Sbjct: 300 --------ALREA---GVSVFVVDARAQFAEATTEMPARRKCAPYRTGKLCEVTDPEEKR 348

Query: 126 ------FSDLLS-VTRQLGADV----LATGHYIRSRLYVGDDGKRRRIMCR-PMDLERDQ 173
                 F  +   V R L  DV    LA G     R  + + G     +    +    + 
Sbjct: 349 VIIGNTFMSVCDTVIRDLQLDVNNLLLAQG---TLRPDLIESGSSYASLTADAIKTHHND 405

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +  +          +  PL D  K+ VR+L   +G+ 
Sbjct: 406 TALVRQLRDA--GRIIEPLCDYHKDEVRELGVRLGIP 440


>gi|148379168|ref|YP_001253709.1| hypothetical protein CBO1183 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933287|ref|YP_001383544.1| hypothetical protein CLB_1214 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935920|ref|YP_001387093.1| hypothetical protein CLC_1226 [Clostridium botulinum A str. Hall]
 gi|168178602|ref|ZP_02613266.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226948450|ref|YP_002803541.1| hypothetical protein TIGR00268 [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288652|emb|CAL82733.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929331|gb|ABS34831.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931834|gb|ABS37333.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. Hall]
 gi|182671522|gb|EDT83496.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226843653|gb|ACO86319.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A2
           str. Kyoto]
          Length = 266

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+    LL +   + +G      ++  +           ++ +A+ + + 
Sbjct: 18  VAVAFSGGVDST----LLLKAAKEALG------DNAISITVVSPYIPKWEIEEAKELANN 67

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 68  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKEKGVK 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 113 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 151

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++E+GL+  +K      C + +  Y   +K 
Sbjct: 152 IRTLSKELGLETWNKP--AYACLLSRIPYNQEIKE 184


>gi|167757683|ref|ZP_02429810.1| hypothetical protein CLOSCI_00012 [Clostridium scindens ATCC 35704]
 gi|167664703|gb|EDS08833.1| hypothetical protein CLOSCI_00012 [Clostridium scindens ATCC 35704]
          Length = 278

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 67/202 (33%), Gaps = 56/202 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY----DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V+VA SGGVDSS++  L           V  V L                   D   A+R
Sbjct: 23  VIVAFSGGVDSSLLLKLACEAALKSNRKVYAVFLHTAMHPSG-----------DAQSAKR 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQ 135
           V + I     +   +E     +               P   C  C R + F  +     +
Sbjct: 72  VAEEIGADFRILKIDELETAQIAD------------NPTDRCYRCKRHL-FEQIQGEAAK 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194
           L A  +  G          DD K  R   R +               ++L  +  PL D 
Sbjct: 119 LQAGWIMEGTNA-------DDLKAYRPGIRAI---------------RELG-IISPLADA 155

Query: 195 -MKKESVRDLAREMGLDIADKS 215
            + KE VR LA+E G+ +A K 
Sbjct: 156 CITKEEVRLLAKEYGISVAKKP 177


>gi|33864583|ref|NP_896142.1| GMP synthase [Synechococcus sp. WH 8102]
 gi|44887992|sp|Q7UA53|GUAA_SYNPX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33632106|emb|CAE06562.1| GMP synthase (glutamine-hydrolysing) [Synechococcus sp. WH 8102]
          Length = 528

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 EKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               N+     +  +RF +            G T     +  R +            +++
Sbjct: 276 -RKFNIHVEYINARQRFISK---------LKGIT---DPEEKRKIIGTEFIRVFEEESKR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + R +GL 
Sbjct: 381 KLFKDEVRKVGRALGLP 397


>gi|300215125|gb|ADJ79541.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 518

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           + +   +    + +   D +V++ +SGGVDSSVV  LL +  G  +  +           
Sbjct: 206 MDDFIDMQIQKIRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGNQLTSIF-----VDHGL 260

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            RKG          A +V D++     ++    D +ERF N +                 
Sbjct: 261 LRKGE---------AEQVMDSLGGKFGLNIIKVDAKERFLNKLAGVSDPEKKRK------ 305

Query: 118 VDCNRTVK-FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           +  N  ++ F D     +  G + LA G      +  G D  +     +           
Sbjct: 306 IIGNEFIRVFDD--ESAKLEGIEFLAQGTLYTDIIESGTDTAQT---IKSHHN------- 353

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 354 VGGLPEDVQFKLIEPLNTLFKDEVRELGEKLGMP 387


>gi|260906013|ref|ZP_05914335.1| GMP synthase [Brevibacterium linens BL2]
          Length = 526

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 41/202 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V+ A+SGGVDSSV AAL+ +  G  +  V +         +         D  D    
Sbjct: 222 KKVICALSGGVDSSVAAALVHKAIGDQLTCVFV----DHGLLRENEREQVENDYVD---- 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +I V     D  ERF +           AG T     +  R +   + +       AD
Sbjct: 274 --SIGVRLVTIDARERFLSE---------LAGVT---DPETKRKIIGREFIRTFESASAD 319

Query: 140 VLAT--------GHYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ++A         G  ++  LY   V   G       +           +         +L
Sbjct: 320 LVAEAKDEGEEIGFLVQGTLYPDVVESGGGSGTANIKSHHN-------VGGLPDDITFEL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR + RE+G+ 
Sbjct: 373 IEPLRALFKDEVRAIGRELGVP 394


>gi|45358919|ref|NP_988476.1| PP-loop domain-containing protein [Methanococcus maripaludis S2]
 gi|45047785|emb|CAF30912.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 314

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 20/209 (9%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---LYNSRKASKRKGSC 67
           +L  D    +++V + +SGG DS V+A LL            +     N       +G  
Sbjct: 40  TLGRDVLKNNIKVAMGLSGGKDSLVMAYLLNE--------YYKQIPNSNLIAIMVNEGIE 91

Query: 68  CAGQDVYDAR-RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               D  DA  + C+   + + +  +++     +      +     T  PC  C   ++ 
Sbjct: 92  GYRTDGIDAAVKFCEEYGIEYKIVHFKDYLGTNLDEIVKIAKEKNLTMNPCSFCG-VIRR 150

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L  V+ +   D LA GH +       DD  +  +M       +  ++   +    +  
Sbjct: 151 KILNRVSIEEKCDFLAIGHNL-------DDVAQAVMMNYIEGDVKKLAFLGKSLKHPKFV 203

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKS 215
               PL  + ++ V  LA  + L      
Sbjct: 204 KRIKPLEKIPEDEVLLLAEMLELKYHKSP 232


>gi|127512230|ref|YP_001093427.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella loihica PV-4]
 gi|226739730|sp|A3QCH0|GUAA_SHELP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126637525|gb|ABO23168.1| GMP synthase (glutamine-hydrolyzing) [Shewanella loihica PV-4]
          Length = 525

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLLHRAIGSKLTCVFVDNGLLRLNEADQVLEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF +A          AGE   P  +  R +     + + 
Sbjct: 279 -------DHFGLNIVHVDAESRFLDA---------LAGE-AEP--EAKRKIIGKVFVDIF 319

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +     + A  LA G      +        +  + +           +          L
Sbjct: 320 DEESRKCVNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDMELGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLRELFKDEVRKIGLELGLP 394


>gi|322418448|ref|YP_004197671.1| NAD+ synthetase [Geobacter sp. M18]
 gi|320124835|gb|ADW12395.1| NAD+ synthetase [Geobacter sp. M18]
          Length = 329

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 82/228 (35%), Gaps = 48/228 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +    K  R+VVA+SGG+DSSV AAL  R  G   VIG+ +      + S R+    +G 
Sbjct: 31  MRNQMKRGRIVVALSGGIDSSVTAALSVRALGSSRVIGLEM----PERHSARETLALSG- 85

Query: 72  DVYDARRVCDTINVSHYVFD---------YEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                 +V  ++ +   V D         + E++ NAV      +Y  G T    +    
Sbjct: 86  ------KVAGSLGIETRVEDISGVLQSVGFYEKYDNAV-RSVVPAYGEGWTSKIVISGGA 138

Query: 123 -TVKFSDLLSVTRQLGADVL----------------ATGHYIRSRLYVGDDGKRRRIMCR 165
              +F+    VTR   AD +                AT    R R  +      R     
Sbjct: 139 DKPRFTSFYLVTRD--ADAVQSTVRLPLQPYLEIVAATNFKQRIRKMLEYYYADRLNFAV 196

Query: 166 PMDLER---DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                R   DQ +F+             P+  + K  V  LA  +G+ 
Sbjct: 197 AGTPNRLEYDQGFFV-KLGDGAAD--IKPIAHLYKSQVYQLAEFLGIP 241


>gi|213026071|ref|ZP_03340518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 43

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKS 355
           W+      +      +C VK R  Q  +P  +   +DD + V F++ 
Sbjct: 1   WVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEP 43


>gi|284161173|ref|YP_003399796.1| ExsB family protein [Archaeoglobus profundus DSM 5631]
 gi|284011170|gb|ADB57123.1| ExsB family protein [Archaeoglobus profundus DSM 5631]
          Length = 259

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 48/234 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVV  SGGVDS V    L +   DVI  V         A        +  DV  A+ V  
Sbjct: 19  VVVMFSGGVDS-VTLTKLCK---DVIKRVF--------AVTVVSEVLSKYDVEYAKSVAK 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V HY+ +         I               C  C + +    +      +G + +
Sbjct: 67  EIGVDHYILE---------IDLLNDENFVRNDENRCYFCKKKM-IRMVKEFASAVGVECI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G  +        +    R   R +  E   S ++                 + KE +R
Sbjct: 117 VEGTNVS-------ELNEYRPGYRAVVEEGVYSPWIEV--------------GIDKEEIR 155

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQIL 253
            +A+++GL + D   +   C   +  +   +  +R+      E  +  L+ +++
Sbjct: 156 SIAKKLGLSVHDNPPTT--CLATRIPFGHRITHERLRRIEKAESIVRDLDFKVV 207


>gi|307720816|ref|YP_003891956.1| NH(3)-dependent NAD(+) synthetase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978909|gb|ADN08944.1| NH(3)-dependent NAD(+) synthetase [Sulfurimonas autotrophica DSM
           16294]
          Length = 268

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 43/186 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+ +SGG+DS+VVA L  +  G D++ V +                +   + DA  +
Sbjct: 25  TKVVLGLSGGLDSAVVAVLAHKAFGDDLLCVKM-----------PSQYSSQSSLDDADEL 73

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    +               +     +Y       P +D  R   FS  + +       
Sbjct: 74  CRDFGLKAITCS---------VESMLRAYEE---MNPDLDNLRKGNFSARMRMATLFDIS 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                    + L +G   K   ++              + T    L     P+GD+ K  
Sbjct: 122 AR------ENALVLGTSNKSELML-------------GYGTLYGDLASAINPIGDLYKSE 162

Query: 200 VRDLAR 205
           V +LAR
Sbjct: 163 VFELAR 168


>gi|258405487|ref|YP_003198229.1| PP-loop domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797714|gb|ACV68651.1| PP-loop domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 299

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R++VA+SGG DS  +   L+  GY+V G+ + L     + + K +             
Sbjct: 47  EDRILVAVSGGKDSLALLWQLRDLGYNVHGLHVDLGIPDSSDRAKTA---------IAAF 97

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD   +  ++   EE     V +P  +         P       +K     +   + G +
Sbjct: 98  CDQQAIPLHIVSTEE---AGVAIPDLAE----RIDQPVCSFCGKIKRHFFNTYAVEHGFN 150

Query: 140 VLATGHYI 147
           VLATGH +
Sbjct: 151 VLATGHNL 158


>gi|224005274|ref|XP_002296288.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209586320|gb|ACI65005.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 269

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 71/216 (32%), Gaps = 31/216 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +V    +  S  +D++  +   VVA SGGVDSS+VA L          V      S +A 
Sbjct: 3   LVDRLLQRTSEMMDRDAAN---VVAFSGGVDSSLVADL----------VYRTFSRSVQAV 49

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
               S      +  AR V +TI +        E      I     +         C  C 
Sbjct: 50  LGISSAVPQTQITMARAVAETIGIQLVEVTTTEGSDETYIKNDGHA---------CYVCK 100

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             + +S L SV   +                    G R  I+    + +  Q        
Sbjct: 101 THL-YSTLKSVANSVKRQ--------HQEKSPEKSGGRTVILYNGTNADDTQDPTRLGLH 151

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDS 217
                 +  PL  + K+ VR  A+ +GL   + + S
Sbjct: 152 AASNFKVLSPLDQITKDEVRQAAKHLGLPNWNAAAS 187


>gi|146421465|ref|XP_001486678.1| hypothetical protein PGUG_00055 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146387799|gb|EDK35957.1| hypothetical protein PGUG_00055 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 416

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+VI   L                  +D   A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FLANI------------GQEEDFEAAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F  +V  P   +       Y  G +    V     +K     
Sbjct: 49  KALAIGATKFVVVDVRKEFVESVCFPAIQANAIYENVYLLGTSLARPVIAQAQIK----- 103

Query: 131 SVTRQLGADVLATG 144
            V  +     ++ G
Sbjct: 104 -VAEENDCFAVSHG 116


>gi|251771882|gb|EES52456.1| GMP synthase [glutamine-hydrolyzing] [Leptospirillum
           ferrodiazotrophum]
          Length = 513

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 34/192 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + A+SGG+DS+V A L  R  G       +     RK    +      +D+        +
Sbjct: 220 ICALSGGIDSTVTALLCHRALGERFHAFFVDNGLLRKNELPEM----ERDLS-------S 268

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
           + +   + D  + F +    V  P       G T                +   R+ G  
Sbjct: 269 LGIPLEIIDARDLFLDRLKGVADPEKKRKTIGRTF-----------IDVFVREARRRGTY 317

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +           + +           +    ++   +L  PL ++ K+
Sbjct: 318 RYLAQGTLYPDVIESVSSFGGPSAVIKSHHN-------VGGLPKRMPFELVEPLRELFKD 370

Query: 199 SVRDLAREMGLD 210
            VR L RE+GL 
Sbjct: 371 EVRRLGRELGLS 382


>gi|307151612|ref|YP_003886996.1| NAD+ synthetase [Cyanothece sp. PCC 7822]
 gi|306981840|gb|ADN13721.1| NAD+ synthetase [Cyanothece sp. PCC 7822]
          Length = 561

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DSS+VAA+     G D V+GV +                +   + DA  
Sbjct: 305 TKVVLGLSGGIDSSLVAAIAAEAMGKDNVLGVLM-----------PSPYSSDHSITDAEA 353

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           +   + +  Y    E      V          G TP    + N    ++ + L+++  + 
Sbjct: 354 LAKNLGIKSYQLPIEPA--MKVYDQMLEPLFTG-TPFGIAEENIQSRIRGNLLMAIANKF 410

Query: 137 GADVLATG 144
           G  +L+TG
Sbjct: 411 GYLLLSTG 418


>gi|257069304|ref|YP_003155559.1| argininosuccinate synthase [Brachybacterium faecium DSM 4810]
 gi|256560122|gb|ACU85969.1| argininosuccinate synthase [Brachybacterium faecium DSM 4810]
          Length = 412

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 65/200 (32%), Gaps = 39/200 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    +    G DVI                     G+D+   R+  
Sbjct: 4   KIVLAYSGGLDTSVAIGWIHDATGADVIAC------------AVDVGQGGEDLEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D  + F     +P   + A      P V   +R V    L+   ++ GA
Sbjct: 52  LDCGAVEAYVADARDEFAEEYCMPALQANALYMDAYPNVSAISRPVITKHLVKAAKKFGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
             +A G                   C       DQ  F  + T          P+ D  +
Sbjct: 112 TTVAHG-------------------CTGK--GNDQVRFEVSITSLAPELKCIAPVRDLAL 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            ++   + A   GL I    
Sbjct: 151 TRDKAIEYAERKGLPIETTK 170


>gi|332158136|ref|YP_004423415.1| argininosuccinate synthase [Pyrococcus sp. NA2]
 gi|331033599|gb|AEC51411.1| argininosuccinate synthase [Pyrococcus sp. NA2]
          Length = 393

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 44/207 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+VV+A SGG+D+SV+  L++     +VI VT+ +       K +               
Sbjct: 1   MKVVLAYSGGLDTSVILKLMQEKLNAEVITVTVDVGQKDDFKKIEEK------------- 47

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              +  V HY  D +E F    I     + A  E   P      R +    ++ + ++  
Sbjct: 48  ALKLGAVKHYTIDAKEEFAKEYIAKAIKANALYEGAYPLASALARPLIAKKVVEIAKKEN 107

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL-- 192
           AD +A G                          +      F  T + LC    +  P+  
Sbjct: 108 ADAIAHG-----------------------CTGKGNDQVRFDLTIKALCPEIKIIAPVRE 144

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQD 219
             + ++   + A++ G+ + +K  S D
Sbjct: 145 WGLTRDWEIEYAKKNGIPVKEKIYSID 171


>gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 485

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 37/205 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +VVA+SGGVDS+V+  ++K        G  +I   L        + R        D    
Sbjct: 29  IVVAVSGGVDSTVLLHIMKEIAGDKALGLQLICAHLHHGLRGDEADR--------DAEFV 80

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R + + + +      Y +            +Y   ET        R  ++  L  V  + 
Sbjct: 81  RELAERLGIPFE-LGYAD----------VRAYMK-ETGQSLELAAREKRYEYLHQVAERY 128

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--LRFPLGD 194
           GA  +A  H+   +            + R        S       +++  +  L  PL  
Sbjct: 129 GASSIALAHHADDQAE-----TVLMRLLRGSGP----SGLAGMRPKRREKNVELIRPLLR 179

Query: 195 MKKESVRDLAREMGLDIADKSDSQD 219
           + K  +    RE GL   + S + D
Sbjct: 180 IYKTDLLQACRESGLAYVEDSSNLD 204


>gi|239637212|ref|ZP_04678200.1| GMP synthase [Staphylococcus warneri L37603]
 gi|239597168|gb|EEQ79677.1| GMP synthase [Staphylococcus warneri L37603]
          Length = 513

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  N++    + ++RF   +                 V       F D    ++  G
Sbjct: 269 --GEGFNMNIIRVNAQDRFMKKLAGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|297183152|gb|ADI19294.1| GMP synthase, pp-ATPase domain/subunit [uncultured SAR406 cluster
           bacterium HF0500_01L02]
          Length = 516

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+V +SGGVDS+VVAAL+ R  G     V   L +     K +   C          
Sbjct: 218 DGKVLVGVSGGVDSTVVAALMHRAIGERSTAV---LIDHGLMRKNEAKNC-------VSA 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
           + D + V+ + +D    F + +                 +  N+ +       ++ +LG 
Sbjct: 268 LKDGLKVNIHCYDESNIFLSKLSDITDPEEKRK------IIGNQFI--YSFDRISGELGE 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +  G    +   M +           +    +    +L  PL ++ K
Sbjct: 320 MQFLAQGTLYPDVIESGVSKGKSAHMIKSHHN-------VGGLPKNMTFELVEPLRELFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR++ RE+GL 
Sbjct: 373 DEVRNVGRELGLP 385


>gi|298675751|ref|YP_003727501.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288739|gb|ADI74705.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
          Length = 267

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 51/220 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +V+A SGGVDSS+++ L K            L N                +  A++
Sbjct: 16  KKGPMVIAFSGGVDSSLLSLLAKET----------LGNQHLCILLDSPLVPQHSIEQAKK 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLS-VTR 134
           + +  +++  +             PF +   +G    P   C  C +    S LL     
Sbjct: 66  ISNEFDLNFEIL------------PFKALNKSGIVDNPKDRCYHCKKAS--SQLLKCYAL 111

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G + +A G        + D G+ R  +    +      +                  +
Sbjct: 112 NKGFNCIADG------TNLSDLGEYRPGLAAGEEENIAHPFVDA---------------E 150

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           + K  +R +A+E G D  +   S   C   +  Y +++  
Sbjct: 151 ISKPDIRKIAKERGYDFWNLPSS--SCLASRIPYNEILTE 188


>gi|163867477|ref|YP_001608676.1| GMP synthase [Bartonella tribocorum CIP 105476]
 gi|161017123|emb|CAK00681.1| GMP synthase [Bartonella tribocorum CIP 105476]
          Length = 530

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 72/204 (35%), Gaps = 54/204 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV+  +SGGVDSSVVA LL       IG  +T  L +     K +           A+ V
Sbjct: 235 RVICGLSGGVDSSVVAVLLHEA----IGDQLTCILVDHGLMRKNE-----------AQEV 279

Query: 80  C----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                D  N+     +  + F NA           GET     +  R       + V  +
Sbjct: 280 LTLFRDHYNIELIHVNAADIFLNA---------LEGET---DPEKKRKTIGRLFIEVFEE 327

Query: 136 L-----GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 GA+ LA        I S   +G+    +                +    +Q   
Sbjct: 328 ETKKIGGAEFLAQGTLYPDVIESVSAIGESVTIKSHHN------------VGGLPEQMNM 375

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR L RE+GL 
Sbjct: 376 KLVEPLRELFKDEVRLLGRELGLP 399


>gi|260061668|ref|YP_003194748.1| argininosuccinate synthase [Robiginitalea biformata HTCC2501]
 gi|88785800|gb|EAR16969.1| argininosuccinate synthase [Robiginitalea biformata HTCC2501]
          Length = 394

 Score = 59.8 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 16/128 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S  A +L  ++GY+V  VT    N+    K + +    + +      
Sbjct: 2   KKLVLAYSGGLDTSYCAHMLSHKEGYEVHAVT---VNTGGFDKEQLAGIEERALE----- 53

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQL 136
              +  S Y   D  + F + V+              P       +    L  +   R +
Sbjct: 54  ---LGASTYTAIDAVQSFYDRVVKYLIFGNVLRNNTYPLSVSAERI-VQALEIVEYARGV 109

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 110 GATHIAHG 117


>gi|256810146|ref|YP_003127515.1| exsB protein [Methanocaldococcus fervens AG86]
 gi|256793346|gb|ACV24015.1| exsB protein [Methanocaldococcus fervens AG86]
          Length = 232

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 42/225 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +SGG+DS+V   + K  GY++  +T             G     +++  ++++C
Sbjct: 1   MKAVTVLSGGLDSTVSTLIAKNLGYEITAITF----------NYGQKAVKREINASKKIC 50

Query: 81  DTINVSHYVFD--YEERFRNA--VIVP--------FASSYAAGETPLPCVDCNRTVKF-S 127
           + ++++H V D  + ++F+ +  +              S  A ET        R +   S
Sbjct: 51  EILDINHIVVDLPFIKQFKKSSLITENEIPSLKIEDLDSEKAHETMKTVWVPARNLIMLS 110

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLC 186
                   L A+ +  G      L   D+       + + ++             + ++ 
Sbjct: 111 IASGFAEALDAEKVFIGINKEEGLTFPDNTIEFVDALNKALEYGT--------LNKVKIE 162

Query: 187 DLRFPLGDMKKESV----RDLAREMGLDIADKSDSQDICFVQQGK 227
               PL D  KE +    R++ +++GL++   S S   C+   G+
Sbjct: 163 A---PLYDKTKEEIVKIGREIEKKLGLEVLKYSYS---CYKDNGE 201


>gi|110635672|ref|YP_675880.1| argininosuccinate synthase [Mesorhizobium sp. BNC1]
 gi|110286656|gb|ABG64715.1| argininosuccinate synthase [Chelativorans sp. BNC1]
          Length = 419

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 5   EATRLNSLDLDKNPKD-MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASK 62
            ATR +S       KD  +VV+A SGG+D+S++   L+   G +V+  T           
Sbjct: 2   PATRTHSEKTMATHKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT----------- 50

Query: 63  RKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDC 120
                  G+++  ARR  + + +   ++ D  E F R+ V   F ++     T L     
Sbjct: 51  --ADLGQGEELEPARRKAEMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSI 108

Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144
            R +    L+ +  + GAD +A G
Sbjct: 109 ARPLIAKRLVEIAAETGADAIAHG 132


>gi|282889933|ref|ZP_06298468.1| hypothetical protein pah_c008o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500126|gb|EFB42410.1| hypothetical protein pah_c008o016 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 221

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 54/229 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V +SGG+DS+V+ A L     +    TL +        R        ++  A+++ 
Sbjct: 1   MKAIVLLSGGLDSAVMLARLHEQQIE----TLAISFDYGQRHR-------VELEFAKKIA 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGET-------------------PLPCVDCN 121
           D   + H V           I P      +  T                   P   V   
Sbjct: 50  DFYGIEHEVIP---------IDPLIFRGGSALTSSATPQKGKSKEDILKQSIPFTYVPAR 100

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            T+  +  L+     GAD +  G      L   D        CRP   E  Q  F  AT 
Sbjct: 101 NTLFLAYALAKAEMHGADQIHFGSNAMDFLSYPD--------CRPGYFEAAQELFNRATK 152

Query: 182 QQQLCDL---RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           Q           PL    KE +       G  +    +    C+     
Sbjct: 153 QSVEGKAPQIVTPLLKWTKEEIVKE----GYRLKVPFELTSSCYDPTAN 197


>gi|289432941|ref|YP_003462814.1| argininosuccinate synthase [Dehalococcoides sp. GT]
 gi|288946661|gb|ADC74358.1| argininosuccinate synthase [Dehalococcoides sp. GT]
          Length = 406

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S     L+   G DVI VT+ + N +  +  K           A +V 
Sbjct: 4   KVVLAYSGGLDTSAAVKWLQEKYGMDVIAVTIDVGNEKDFTLIK---------EKALKVG 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F    I     + +  E   P      R +    ++ +  + GA 
Sbjct: 55  AK---KAYVRDVRKEFAEDYIWKAIKANSMYEGVYPLATALARPLIAKVMVDIALEEGAT 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--GD 194
            +A G                          +      F      L     +  P     
Sbjct: 112 AIAHG-----------------------CTGKGNDQVRFDVGINTLAPHLKIIAPARQWG 148

Query: 195 MKKESVRDLAREMGLDIA 212
           M +E   + A++ G+ + 
Sbjct: 149 MTREQTMEYAQKWGIPVP 166


>gi|256848294|ref|ZP_05553737.1| GMP synthase domain-containing protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714892|gb|EEU29870.1| GMP synthase domain-containing protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 517

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSV A LL +     IG  +T    +     K +          D  
Sbjct: 222 DKKVILGLSGGVDSSVTAVLLHKA----IGDQLTCIFVDHGLLRKNEADQVMNALSRD-- 275

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
                + V+    D  +RF              G T     +  R +   + + V     
Sbjct: 276 -----LGVNIIKVDASDRFLGK---------LKGVT---DPEKKRKIIGKEFVEVFNEEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++  A+ LA G      +  G D  +     +           +    ++    L  PL
Sbjct: 319 KKMDDAEFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPKKLGFKLIEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+  R+L  ++G+ 
Sbjct: 369 RSLFKDETRELGEKLGIP 386


>gi|229815927|ref|ZP_04446250.1| hypothetical protein COLINT_02983 [Collinsella intestinalis DSM
           13280]
 gi|229808480|gb|EEP44259.1| hypothetical protein COLINT_02983 [Collinsella intestinalis DSM
           13280]
          Length = 563

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 30/197 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSSVVAAL    G   +G  +          RKG     ++V+     
Sbjct: 249 EDRVILALSGGVDSSVVAAL----GARAVGRQMTCVFINHGLLRKGEPEQVEEVF----- 299

Query: 80  CDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +V       EER+    + V  P       G              +++  +V ++L
Sbjct: 300 TKQFDVDFVHVHAEERYAALLDGVTDPEEKRRIIGTQF-----------WNEFFAVAKEL 348

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS---YFLFATTQQQLCDLRFPLG 193
             D     +  +  +Y        R         +       F           L  PL 
Sbjct: 349 EQDGRPVKYLAQGTIYPDIIESGARKTGGKTATIKSHHNLIPFPEGVHFD----LIEPLD 404

Query: 194 DMKKESVRDLAREMGLD 210
              K+ VR+L   +GL 
Sbjct: 405 HFFKDEVRELGLALGLP 421


>gi|332172920|gb|AEE22174.1| GMP synthase, large subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 525

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           + +   D  V++ +SGGVDSSVVA LL R  G ++  V      L+L   ++     G  
Sbjct: 221 MKEQIGDDEVILGLSGGVDSSVVAMLLHRAIGKNLTCVFVDNGLLRLNEGQQVMDMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   ++    D EERF +          A   T  P  +  R +   
Sbjct: 279 -------------DHFGLNIIKIDAEERFLS----------ALAGTDEP--EAKRKIIGR 313

Query: 128 DLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + V  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEVFDEESKKLKNAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPA 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 DMQMGLVEPLRELFKDEVRKIGLELGLP 394


>gi|225686194|ref|YP_002734166.1| GMP synthase [Brucella melitensis ATCC 23457]
 gi|256043277|ref|ZP_05446212.1| GMP synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256111721|ref|ZP_05452705.1| GMP synthase [Brucella melitensis bv. 3 str. Ether]
 gi|256262678|ref|ZP_05465210.1| GuaA [Brucella melitensis bv. 2 str. 63/9]
 gi|260564483|ref|ZP_05834968.1| GuaA family protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989701|ref|ZP_06102258.1| GMP synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993194|ref|ZP_06105751.1| GMP synthase [Brucella melitensis bv. 3 str. Ether]
 gi|254800089|sp|C0RKS9|GUAA_BRUMB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225642299|gb|ACO02212.1| GMP synthase, C-terminal domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|260152126|gb|EEW87219.1| GuaA family protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764064|gb|EEZ10096.1| GMP synthase [Brucella melitensis bv. 3 str. Ether]
 gi|263000370|gb|EEZ13060.1| GMP synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092464|gb|EEZ16717.1| GuaA [Brucella melitensis bv. 2 str. 63/9]
 gi|326410537|gb|ADZ67601.1| GMP synthase [Brucella melitensis M28]
 gi|326553828|gb|ADZ88467.1| GMP synthase [Brucella melitensis M5-90]
          Length = 520

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        +G  +T  L +     K +      Q V   R  
Sbjct: 224 KVICALSGGVDSSVAALLAHEA----VGDQLTCILVDHGLMRKDE----VQQVVEMFR-- 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
            +  N+   + D  +RF          +      P         +         R+L GA
Sbjct: 274 -EHYNLPLILVDASDRF--------IGALEGESDPEKKRKTIGRLFIEVFEEEARKLGGA 324

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +          +  +           +    ++    L  PL ++ K+
Sbjct: 325 DFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRELFKD 377

Query: 199 SVRDLAREMGLD 210
            VR L +E+GL 
Sbjct: 378 EVRLLGKELGLP 389


>gi|73748944|ref|YP_308183.1| argininosuccinate synthase [Dehalococcoides sp. CBDB1]
 gi|147669711|ref|YP_001214529.1| argininosuccinate synthase [Dehalococcoides sp. BAV1]
 gi|119361270|sp|Q3ZYG0|ASSY_DEHSC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189046387|sp|A5FQ73|ASSY_DEHSB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|73660660|emb|CAI83267.1| argininosuccinate synthase [Dehalococcoides sp. CBDB1]
 gi|146270659|gb|ABQ17651.1| argininosuccinate synthase [Dehalococcoides sp. BAV1]
          Length = 406

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S     L+   G DVI VT+ + N +  +  K           A +V 
Sbjct: 4   KVVLAYSGGLDTSAAVKWLQEKYGMDVIAVTIDVGNEKDFTLIK---------EKALKVG 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F    I     + +  E   P      R +    ++ +  + GA 
Sbjct: 55  AK---KAYVRDVRKEFAEDYIWKAIKANSMYEGVYPLATALARPLIAKVMVDIALEEGAT 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--GD 194
            +A G                          +      F      L     +  P     
Sbjct: 112 AIAHG-----------------------CTGKGNDQVRFDVGINTLAPHLKIIAPARQWG 148

Query: 195 MKKESVRDLAREMGLDIA 212
           M +E   + A++ G+ + 
Sbjct: 149 MTREQTMEYAQKWGIPVP 166


>gi|54307976|ref|YP_128996.1| GMP synthase [Photobacterium profundum SS9]
 gi|50400315|sp|Q6LU31|GUAA_PHOPR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46912402|emb|CAG19194.1| putative GMP synthase [Photobacterium profundum SS9]
          Length = 527

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 67/202 (33%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L    +     G        
Sbjct: 229 DDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLNEGEQVMDMFG-------- 280

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E+RF NA          AGE      +  R +     + V 
Sbjct: 281 -------DHFGLNIVHVKAEDRFLNA---------LAGEN---DPEAKRKIIGHAFIDVF 321

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +       A  LA G      +        +  + +           +          L
Sbjct: 322 DEESKKLKNAKWLAQGTIYPDVIESAASKNGKAHVIKSHHN-------VGGLPDDMEMGL 374

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 375 VEPLRELFKDEVRKIGLELGLP 396


>gi|319399776|gb|EFV88024.1| GMP synthase [glutamine-hydrolyzing] [Staphylococcus epidermidis
           FRI909]
          Length = 513

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 NRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + +ERF + +                 V       F D     +   
Sbjct: 269 --GEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYV-----FDD--EAAKLTD 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|238026928|ref|YP_002911159.1| GMP synthase [Burkholderia glumae BGR1]
 gi|237876122|gb|ACR28455.1| GMP synthase, large subunit [Burkholderia glumae BGR1]
          Length = 539

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ-----MVLD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQLG 137
            ++      D  E+F             AG T     +  R +   + + V     R+LG
Sbjct: 275 RLHAKVVHVDASEQFLGQ---------LAGVT---DPEAKRKIIGREFVEVFQAEARKLG 322

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|222824480|ref|YP_002576054.1| hypothetical protein Cla_1498 [Campylobacter lari RM2100]
 gi|222539701|gb|ACM64802.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 327

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G +V  + + +          G      ++  A+R  
Sbjct: 1   MKALALFSGGLDSMLAIKLITSQGIEVKALNINI--------GFGGTSDKSEII-AKRAA 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                S  + D    +   V+  F+  Y  G+   PC+DC+  + F   LS+ +   A  
Sbjct: 52  MA-GASFEMIDVRNAYLQEVL--FSPQYGYGKHFNPCIDCHAFM-FKTALSMLKDENASF 107

Query: 141 LATGHYIRSRLYVGDD 156
           + TG  +  R     +
Sbjct: 108 IITGEVVGQRPMSQRN 123


>gi|237745832|ref|ZP_04576312.1| GMP synthase [Oxalobacter formigenes HOxBLS]
 gi|229377183|gb|EEO27274.1| GMP synthase [Oxalobacter formigenes HOxBLS]
          Length = 535

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 32/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGKTVMDMF-------AK 278

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + V     D  E+F + +             G   +  V  N   K S          A
Sbjct: 279 NLGVKVIHVDASEQFMSKLADVTDPEEKRKIIGREFVE-VFQNEAGKIS---------NA 328

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +     GK+ + +    +        +          L  PL ++ K+
Sbjct: 329 KWLAQGTIYPDVIESAGKGKKGQTIKSHHN--------VGGLPDTLNLQLLEPLRELFKD 380

Query: 199 SVRDLAREMGLD 210
            VR+L   +GL 
Sbjct: 381 EVRELGLALGLP 392


>gi|189464269|ref|ZP_03013054.1| hypothetical protein BACINT_00608 [Bacteroides intestinalis DSM
           17393]
 gi|189438059|gb|EDV07044.1| hypothetical protein BACINT_00608 [Bacteroides intestinalis DSM
           17393]
          Length = 401

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VVVA SGG+D+S  V  L K  GY+V                     + + +     
Sbjct: 4   KKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKTNEE 52

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQ 135
               +    YV  D  + +    +              P    +  + F  L       +
Sbjct: 53  NAYKLGAKEYVTIDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYANE 111

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 112 IGADAIAHG 120


>gi|154151662|ref|YP_001405280.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000214|gb|ABS56637.1| PP-loop domain protein [Methanoregula boonei 6A8]
          Length = 278

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 58/235 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDSS++A L ++    V+G         +           + + +AR +    
Sbjct: 21  LVAFSGGVDSSLLAVLAQK----VLG------ERSRCVLLDSPVVPREAIEEARLIAQKY 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRT----VKFSDLLSVTRQL 136
            +   +   +                   T  P   C  C +     +K+       R+L
Sbjct: 71  QLDLEILPVKVMDDERF------------TKNPAERCYWCKKNSAAVLKW-----RAREL 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   +A G      + V D G+ R  +    +                L         + 
Sbjct: 114 GFACVADG------INVSDTGEHRPGLVASTEEG---------VVHPFLE------AGIS 152

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD-IVHLNG 250
           K  +R++AR  G+   DK  +   C   +  Y D +      +  E +  +H NG
Sbjct: 153 KNEIREIARNEGMVFWDKPSA--ACLSSRFPYGDEITGEKLHMIEEAEAFLHRNG 205


>gi|291518594|emb|CBK73815.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 515

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 26/200 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV+AALL +  G  +  V     +     K +G      
Sbjct: 209 EIRQRVGDGKVLLALSGGVDSSVLAALLAKAIGKQLTCVF---VDHGLLRKNEGDEVESV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                     + +++    +  ER+   +                 +     ++      
Sbjct: 266 FGE-----AGSFDINFVRVNAAERYYAKLAGVTEPEQKRK------IIGEEFIRV--FEE 312

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +++G  D LA G      +  G  G+   I        +               ++  
Sbjct: 313 EAKKIGTVDFLAQGTIYPDVVESGLGGESVVI--------KSHHNVGGLPDYVDFKEIIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 365 PLRNLFKDEVRKVGLELGLP 384


>gi|242243328|ref|ZP_04797773.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis W23144]
 gi|293367654|ref|ZP_06614306.1| GMP synthase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|242233277|gb|EES35589.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis W23144]
 gi|291318224|gb|EFE58618.1| GMP synthase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 515

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 220 NRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 270

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + +ERF + +                 V       F D     +   
Sbjct: 271 --GEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYV-----FDD--EAAKLTD 321

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 322 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 371

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 372 DEVRALGIELGIP 384


>gi|222147262|ref|YP_002548219.1| GMP synthase [Agrobacterium vitis S4]
 gi|254799666|sp|B9JZA3|GUAA_AGRVS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221734252|gb|ACM35215.1| GMP synthase [Agrobacterium vitis S4]
          Length = 520

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 60/195 (30%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+ A+SGGVDSSV A L+       +G         + +         +    A  V
Sbjct: 222 DKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKNEAADVV 269

Query: 80  C---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +  N+     D         I  F         P         +         ++L
Sbjct: 270 AMFKEHYNLHLIHVDA--------IDRFVGELEGVSDPETKRKIIGRLFIETFEEEAKKL 321

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G AD L  G      +          +  +           +     +    L  PL ++
Sbjct: 322 GGADFLGQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPDRMNMKLVEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L +E+GL 
Sbjct: 375 FKDEVRVLGKELGLP 389


>gi|146329608|ref|YP_001209299.1| GMP synthase [Dichelobacter nodosus VCS1703A]
 gi|146233078|gb|ABQ14056.1| GMP synthase [Dichelobacter nodosus VCS1703A]
          Length = 517

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-C 80
           +V++ +SGGVDSSVVAALL    ++VIG  L                   +  +   V  
Sbjct: 221 KVILGLSGGVDSSVVAALL----HEVIGAQL------TCVFVDTGLLRLHEGDEVMAVFA 270

Query: 81  DTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + V+    +  +RF      V  P       G   +          F +     +   
Sbjct: 271 QNMGVNVIRVNAADRFFAALKGVTDPEEKRKTIGRLFIE--------IFDE--EAAKIKD 320

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +        +  + +           +    ++    L  PL  + K
Sbjct: 321 AKWLAQGTIYPDVIESAGSKTGKAQVIKSHHN-------VGGLPEKMNLSLLEPLRMLFK 373

Query: 198 ESVRDLAREMGLD 210
           + VR L   + L 
Sbjct: 374 DEVRQLGLALSLP 386


>gi|119484405|ref|ZP_01619022.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lyngbya sp. PCC 8106]
 gi|119457879|gb|EAW39002.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lyngbya sp. PCC 8106]
          Length = 539

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A L+ R     IG  L      +   RK        +++    
Sbjct: 235 DKRVLLALSGGVDSSTLAFLMHRA----IGDNLTCMFIDQGFMRKYEPERLVKLFE---- 286

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            +  ++     +  ERF              G T     +  R +            + +
Sbjct: 287 -EQFHIPVQYVNARERFLTK---------LNGVT---DPEEKRKIIGHEFIGVFEEESSR 333

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  D LA G      +   D     +   R     +   + +    +     L  PL  
Sbjct: 334 LGPFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSH-HNVGGLPKDLRFKLIEPLRK 392

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 393 LFKDEVRKVGRSIGLP 408


>gi|28199328|ref|NP_779642.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xylella fastidiosa Temecula1]
 gi|182682053|ref|YP_001830213.1| GMP synthase [Xylella fastidiosa M23]
 gi|32129566|sp|Q87BK6|GUAA_XYLFT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739768|sp|B2I6W2|GUAA_XYLF2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28057434|gb|AAO29291.1| glutamine amidotransferase [Xylella fastidiosa Temecula1]
 gi|182632163|gb|ACB92939.1| GMP synthase, large subunit [Xylella fastidiosa M23]
 gi|307578321|gb|ADN62290.1| GMP synthase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 522

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 27/192 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 227 VILGLSGGVDSSVVAALLHKAIGSQLTCVF---------VDTGMLRWGEGDQVMAMF-AE 276

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADV 140
            + V+    +   R+ +A+   +             +  N  +  F +    +++  A  
Sbjct: 277 HMGVNVVRINAASRYFDALQGVYDPEAKRK------IIGNLFIQIFEE--EASKRKQAKW 328

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +Q    +  PL ++ K+ V
Sbjct: 329 LAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEQMTLGMVEPLRELFKDEV 381

Query: 201 RDLAREMGLDIA 212
           R L   +GL  A
Sbjct: 382 RRLGVALGLPHA 393


>gi|308390015|gb|ADO32335.1| putative GMP synthetase [Neisseria meningitidis alpha710]
 gi|325129455|gb|EGC52285.1| GMP synthase [Neisseria meningitidis OX99.30304]
 gi|325135512|gb|EGC58130.1| GMP synthase [Neisseria meningitidis M0579]
          Length = 521

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAERQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|222084579|ref|YP_002543108.1| GMP synthase - glutamine amidotransferase protein [Agrobacterium
           radiobacter K84]
 gi|254799665|sp|B9J7L1|GUAA_AGRRK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221722027|gb|ACM25183.1| GMP synthase - glutamine amidotransferase protein [Agrobacterium
           radiobacter K84]
          Length = 520

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+ A+SGGVDSSV A L+       +G         + +         +    A  V
Sbjct: 222 DKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKDEAANVV 269

Query: 80  C---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +  N+     D  ERF                 P         +         ++L
Sbjct: 270 AMFSEHYNLHLLHVDASERF--------IGELEGVSDPETKRKIIGRLFIETFEEEAKKL 321

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD L  G      +          +  +           +    ++    L  PL ++
Sbjct: 322 GGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLVEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L +E+GL 
Sbjct: 375 FKDEVRALGKELGLP 389


>gi|320449532|ref|YP_004201628.1| archaeosine biosynthesis protein QueC [Thermus scotoductus SA-01]
 gi|320149701|gb|ADW21079.1| archaeosine biosynthesis protein QueC [Thermus scotoductus SA-01]
          Length = 206

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 46/206 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M+ +V +SGG+DSSV+   LK+  G + +  V L L          G+    ++   A +
Sbjct: 1   MKRLVMLSGGLDSSVLLYKLKKQDGLEGLAAVYLDL----------GTPPTQKEWRAAEK 50

Query: 79  VCDTINVSHYVFDYEERFR--NAVIVP----F--ASSYAAGETPLPCVDCNRTVKFSDLL 130
           V   + V+ Y  +    F   + +  P    F    S  AG T  PC     T     L 
Sbjct: 51  VASRLGVAIYR-NRVPHFELGDRLFSPPELAFPGRESIQAGWTD-PCT---MTPITGSL- 104

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC--DL 188
               ++G + +  G        + DD      +         ++Y        +     L
Sbjct: 105 --AAKMGVEEVYLG-------VIKDDFASHPRL---------EAYLALVKKFLEFNQVRL 146

Query: 189 RFPLGDMKKESVRDLAREMGLDIADK 214
           + PL  + K+ V  L  E+G+ + + 
Sbjct: 147 KMPLSGLTKQEVVALGHELGVPLEET 172


>gi|254458633|ref|ZP_05072057.1| GMP synthase [Campylobacterales bacterium GD 1]
 gi|207084399|gb|EDZ61687.1| GMP synthase [Campylobacterales bacterium GD 1]
          Length = 516

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 34/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  +SGGVDSSVVAALL    Y+ IG  L          RKG     + V +  ++  
Sbjct: 221 KVLCGLSGGVDSSVVAALL----YEAIGDQLIPVFVDNGLLRKGE---REQVEEVFKI-- 271

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL-G 137
            +       D  + F   +             G T              +     ++  G
Sbjct: 272 NLKTPLITVDAADNFLGKLAGISDPETKRKIIGHTF-----------IEEFEKEAKKHDG 320

Query: 138 ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              LA G  Y      +  +G        P ++ +   + +         +L  PL ++ 
Sbjct: 321 IKFLAQGTLYPDVIESISVNG--------PSEVIKSH-HNVGGLPDWMDFELIEPLRELF 371

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+GL 
Sbjct: 372 KDEVRKIGLELGLP 385


>gi|57866023|ref|YP_187668.1| GMP synthase [Staphylococcus epidermidis RP62A]
 gi|71152096|sp|Q5HRX1|GUAA_STAEQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57636681|gb|AAW53469.1| GMP synthase [Staphylococcus epidermidis RP62A]
 gi|329727970|gb|EGG64417.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU144]
 gi|329734333|gb|EGG70647.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU028]
 gi|329736119|gb|EGG72392.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 513

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 NRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + +ERF + +                 V       F D     +   
Sbjct: 269 --GEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYV-----FDD--EAAKLTD 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|303234345|ref|ZP_07320984.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna BVS033A4]
 gi|302494461|gb|EFL54228.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna BVS033A4]
          Length = 510

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D +V++A+SGGVDSSV AALL R  G ++  V     +     K +G       
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCAALLSRAIGKNLTCVF---VDHGLMRKNEGDEVEAAF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D         ++    + ++RF N +                 +     ++       
Sbjct: 266 KND--------ELNFVRVNAKDRFLNKLKGVSDPEQKRK------IIGEEFIRV--FEDE 309

Query: 133 TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++G  D LA G        V + G+    + +           +          DL  
Sbjct: 310 AKKIGSVDFLAQG---TIYPDVIESGQGDASVIKSHHN-------VGGLPDVVDFKDLIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR L  E+ + 
Sbjct: 360 PLRDLFKDEVRRLGLELEMP 379


>gi|282874643|ref|ZP_06283525.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis SK135]
 gi|281296567|gb|EFA89079.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis SK135]
          Length = 513

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 NRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +++    + +ERF + +                 V       F D     +   
Sbjct: 269 --GEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYV-----FDD--EAAKLTD 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|242240146|ref|YP_002988327.1| GMP synthase, large subunit [Dickeya dadantii Ech703]
 gi|242132203|gb|ACS86505.1| GMP synthase, large subunit [Dickeya dadantii Ech703]
          Length = 525

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV A LL R  G  +  V +                    + +A +V 
Sbjct: 229 KVILGLSGGVDSSVTALLLHRAIGDRLTCVFVDN--------------GLLRLNEAEQVM 274

Query: 81  DTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +            ++F   ++       F S+ A    P         V          +
Sbjct: 275 EMFG---------DQFGLNIVHVPAEERFLSALAGIADPEAKRKTIGRVFVDVFDEEAGK 325

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L     LA G      +        +  + +           +          L  PL +
Sbjct: 326 LTDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMALGLVEPLKE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 379 LFKDEVRKIGLELGLP 394


>gi|218884778|ref|YP_002429160.1| NAD+ synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766394|gb|ACL11793.1| NAD+ synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 280

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 51/198 (25%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + ++ +SGG+DSSV   LL    G D VIGV +                  +DV DA  
Sbjct: 39  KKAIIGLSGGLDSSVTLRLLVDAVGSDRVIGVIM----------PDTRVTPTEDVDDAVE 88

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA--GETPLPCVDCNR---TVKFSDLLSVT 133
           +   + V + +           I    +SY    G      +        ++ + L  + 
Sbjct: 89  LSRDLGVEYMIIP---------IDDVVNSYRVIPGFDVNEKLSTGNLRARIRMNILYYLA 139

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L   V+ TG      L                D   D                  P+ 
Sbjct: 140 NKLNGVVIGTGDRSEILLGYFTKYG---------DGGVD----------------VLPIA 174

Query: 194 DMKKESVRDLAREMGLDI 211
            + K  V+++ R +GL +
Sbjct: 175 CLYKTQVKEMGRYLGLPV 192


>gi|213963862|ref|ZP_03392110.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
 gi|213953542|gb|EEB64876.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
          Length = 415

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 35/199 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT--LQLYNSRKASKRKGSCCAGQDVYDA 76
           K+ +++VA+SGG+DS V+  LL   G +++      QL                      
Sbjct: 8   KNKKILVAISGGIDSVVLTHLLHFHGTELLLAHCNFQLRGEESDGDE----------AFV 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R    T+ +   V    +RF           YA        +   R +++     +    
Sbjct: 58  RNFAKTLGIPLEV----KRFDTK-------EYAKAHQLNTQLAA-RELRYEWFYELLETH 105

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D LAT H+    L           + R   L+      L    Q Q   +  PL    
Sbjct: 106 HCDALATAHHANDNLE-----TFLINLSRGSGLD-----GLLGIPQ-QTDKIVRPLLQWS 154

Query: 197 KESVRDLAREMGLDIADKS 215
           ++ + D A    L   + S
Sbjct: 155 RQQIYDYAEAHELQWREDS 173


>gi|218780316|ref|YP_002431634.1| ExsB family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761700|gb|ACL04166.1| ExsB family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 279

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 74/257 (28%), Gaps = 76/257 (29%)

Query: 20  DMRVVVAMSGGVDSS-------------VVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
              V+VA SGGVDSS               A                             
Sbjct: 28  QKSVLVAFSGGVDSSLLLALAQQALGDKTAA-----------------------GTVDSP 64

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               ++  +A  +   + + H++    E                      C  C + +  
Sbjct: 65  LLPQREKQEAALLTQQLGIKHHIIKAGEMDSREF---------RANPKNRCYIC-KGLHT 114

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L+ + + LG   +A G          D    R  +    +L                 
Sbjct: 115 RALMELAKSLGLAKVAHG------ANTDDYSDYRPGLQAARELG---------------- 152

Query: 187 DLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF-DVVKRINAGIALEG 243
            +  PL D  + K+ +R+ ++ +GL   DK  S   C   +  Y  +V     A I    
Sbjct: 153 -VLSPLADAGLSKQEIREASKALGLKTWDKP-SM-ACLASRIPYGSEVTAEKLAAIEKAE 209

Query: 244 DIVHLNG--QILGRHNG 258
           D +   G  Q   RH+G
Sbjct: 210 DFLRSQGFKQFRVRHHG 226


>gi|71483021|gb|AAZ32455.1| NH(3)-dependent NAD+ synthetase [uncultured euryarchaeote Alv-FOS1]
          Length = 264

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 50/196 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +VVV +SGG+DS+VV  L     G + V+ V +             S    ++  DAR
Sbjct: 25  DGKVVVGLSGGLDSAVVLKLCAMSLGPERVLAVHM-----------PDSVTPEEESEDAR 73

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSY---AAGETPLPCVDCNRTVKFSDLLSVTR 134
            V             E  FR   I     +    AA E+     +    V+ S L  +  
Sbjct: 74  NVAKE---------AEVEFREIRIDDAVETIADMAALESSGAVANLKARVRMSVLFGIAN 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           Q             SRL  G     +  +           +  +            P+GD
Sbjct: 125 Q------------ESRLVAGT--SNKSELLTGY-------FTKYGDGASDFA----PIGD 159

Query: 195 MKKESVRDLAREMGLD 210
           + K  VR LA ++G+ 
Sbjct: 160 LYKTQVRALAEKIGIP 175


>gi|163783722|ref|ZP_02178709.1| NH(3)-dependent NAD+ synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881047|gb|EDP74564.1| NH(3)-dependent NAD+ synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 567

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 39/189 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+ A +     G D V+GV +                + +   DA+ +
Sbjct: 312 KVVIGLSGGMDSSLTACIATDALGADKVLGVFM-----------PSRFSSKESFEDAKTL 360

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + +  +              P    Y A                 +LL V  ++  D
Sbjct: 361 ADNLGIEFHTV------------PIDEVYVAYH--------------DELLPVLGEIEFD 394

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                   R R  +      +          + +S   + T    +     PL D+ K +
Sbjct: 395 TADENIQARIRANILFYISNKLGHLVLSTSNKSESATGYTTIYGDMSGGFAPLKDLYKTT 454

Query: 200 VRDLAREMG 208
           +  LAR   
Sbjct: 455 IYKLARYRN 463


>gi|325263320|ref|ZP_08130055.1| GMP synthase, C- domain protein [Clostridium sp. D5]
 gi|324031713|gb|EGB92993.1| GMP synthase, C- domain protein [Clostridium sp. D5]
          Length = 430

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +           
Sbjct: 135 DKKVLLALSGGVDSSVVAALLIKAIGGQLVCVHVNHGLMRKNESESVVEVFQ-------- 186

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + ++ +    D  +RF + +                 +     ++        
Sbjct: 187 -------NQLHANLIYVDATDRFLDKLAGVADPEEKRK------IIGGEFIRV--FEEEA 231

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R+L G + L  G        + + G +   M +           +    +     L  PL
Sbjct: 232 RKLDGIEFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLQFALVEPL 281

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+GL 
Sbjct: 282 KQLFKDEVRACGIELGLP 299


>gi|296313949|ref|ZP_06863890.1| GMP synthase [Neisseria polysaccharea ATCC 43768]
 gi|296839492|gb|EFH23430.1| GMP synthase [Neisseria polysaccharea ATCC 43768]
          Length = 521

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAERQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|3929020|gb|AAC79759.1| putative GMP synthase [Haemophilus ducreyi]
          Length = 368

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 70  NDQVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 121

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + EERF  A+         A       +     +         
Sbjct: 122 -------DKFGLNIIRVNAEERFLEALKG--IDEPEAKRK----IIGKVFI--DIFDDEA 166

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 167 KKLTDVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 219

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 220 RELFKDEVRKIGLTLGLP 237


>gi|13627050|sp|O85192|GUAA_LACRH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|3483135|gb|AAC33274.1| GMP synthetase [Lactobacillus rhamnosus]
          Length = 517

 Score = 59.8 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVV  LL +     IG  L          RKG          A +V
Sbjct: 222 DKRVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKGE---------AEQV 268

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            D++     ++    + ++RF N            G T     +  R +   D +     
Sbjct: 269 MDSLKGKFGLNIIKVNAKDRFLND---------LRGVT---DPEKKRKIIGRDFIEVFNE 316

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + LA G      +  G D  +     +           +    +     L  
Sbjct: 317 EAAKLNGIEFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGLPEDLKFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR+L  ++G+ 
Sbjct: 367 PLNKLFKDEVRELGEKLGMP 386


>gi|322368311|ref|ZP_08042880.1| NAD synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552327|gb|EFW93972.1| NAD synthetase [Haladaptatus paucihalophilus DX253]
          Length = 264

 Score = 59.8 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 42/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G + + G+ +            G+     ++ DA  V  
Sbjct: 35  VLGLSGGIDSTLTAYLAAEALGTENLHGLVM-----------PGAVSREDNMSDAEWVAS 83

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +++ VF+      N ++  F  +Y+  E     V  N   +   +++         +
Sbjct: 84  ELGITYDVFEI-----NPIVDSFLDAYSEAEGDHMAVG-NARARTRAVMNYLVANHEGSV 137

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   R+   VG                    YF         C    P+G++ K+ VR
Sbjct: 138 VLGTGNRTEALVG--------------------YFTKYGDGAVDCH---PIGNLYKQQVR 174

Query: 202 DLAREMGLD 210
            LA+ +G  
Sbjct: 175 QLAKHVGAP 183


>gi|295689966|ref|YP_003593659.1| GMP synthase large subunit [Caulobacter segnis ATCC 21756]
 gi|295431869|gb|ADG11041.1| GMP synthase, large subunit [Caulobacter segnis ATCC 21756]
          Length = 520

 Score = 59.8 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 67/228 (29%), Gaps = 44/228 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDSSV A L+    G  +  V +     RK    +                
Sbjct: 224 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDTGLLRKNEAEQVVTLFR---------- 273

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           D  N+     D  + F      V  P       G   +          F       +  G
Sbjct: 274 DHYNIPLVHVDAGDLFLGELAGVSDPETKRKTIGRLFIDV--------FDK--EAAKIDG 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +           + +           +          L  PL ++ K
Sbjct: 324 AQFLAQGTLYPDVVESVSARGGPSAVIKSHHN-------VGGLPDYMKLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           + VR L  E+GL  A         FV +  +          I + G+I
Sbjct: 377 DEVRALGVELGLAPA---------FVGRHPFPG----PGLAIRIPGEI 411


>gi|298246334|ref|ZP_06970140.1| GMP synthase, large subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553815|gb|EFH87680.1| GMP synthase, large subunit [Ktedonobacter racemifer DSM 44963]
          Length = 548

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 34/197 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++ A+SGGVDS+V A L+ +     IG      +          C    +     +V +
Sbjct: 247 RILCALSGGVDSAVAALLVHKA----IG------DQLTCMFVDTGCMREGEGE---QVAE 293

Query: 82  ----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVT 133
                +++     D EERF             AG T     +  R +             
Sbjct: 294 TFRNHLHIPLVAIDAEERFLGK---------LAGVT---DPERKRKIIGEEFIRVFEEEA 341

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +L  +        +  LY                  +   + +    ++ +  L  PL 
Sbjct: 342 VKLATEQGKISFLAQGTLYPDVIESTSHDTANTAKRIKTH-HNVGGLPEEMVFKLVEPLR 400

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR++  E+GL 
Sbjct: 401 MLFKDEVREIGLELGLP 417


>gi|326203773|ref|ZP_08193636.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
 gi|325986213|gb|EGD47046.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
          Length = 271

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDSS    LLK   YDV+G          A     S    +++ +A+    + 
Sbjct: 22  AVAFSGGVDSS---FLLKVA-YDVLG------KDVVAVTAHSSTYPEREMNEAKEFTASF 71

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H + D EE                      C  C   + +  + +V ++     +  
Sbjct: 72  GIRHRIIDSEELDVEGFSDNPV---------NRCYLCKNEL-YDKIQTVAKEENVKHILE 121

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G          D G  R  +    +                   +  PL D  + K+ +R
Sbjct: 122 G------SNHDDLGDYRPGLQAVSEHG-----------------VLSPLKDALLTKDEIR 158

Query: 202 DLAREMGLDIADKS 215
            L++EMGL   DK 
Sbjct: 159 FLSKEMGLKSWDKP 172


>gi|212550361|ref|YP_002308678.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548599|dbj|BAG83267.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 447

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 37/188 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++VV +SGGVDSSV+  +L   GY         +     S R        D   A  +  
Sbjct: 25  KIVVGVSGGVDSSVLLYILHHLGYKCQAAHCNFHLRGDESCR--------DEKHAALLAS 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++N+          F+      F + Y A    +      R +++     + ++  A+V+
Sbjct: 77  SMNLVF--------FKKD----FNTQYLAQRNKISIEMAARVLRYKWFEYLRQEQNAEVI 124

Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCD--LRFPLGDMKKE 198
           A  H      + GD+       + R   +              +     +  PL D+ ++
Sbjct: 125 AVAH------HKGDNIETLLLNLVRGTGIR--------GLKGIRPKHGKIIRPLLDITRQ 170

Query: 199 SVRDLARE 206
            +   A++
Sbjct: 171 EIVQFAKD 178


>gi|17989232|ref|NP_541865.1| GMP synthase [Brucella melitensis bv. 1 str. 16M]
 gi|21759171|sp|Q8YBL2|GUAA_BRUME RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|17985091|gb|AAL54129.1| gmp synthase (glutamine-hydrolyzing) [Brucella melitensis bv. 1
           str. 16M]
          Length = 507

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ A+SGGVDSSV A L        +G  +T  L +     K +      Q V   R  
Sbjct: 224 KVICALSGGVDSSVAALLAHEA----VGDQLTCILVDHGLMRKDE----VQQVVEMFR-- 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
            +  N+   + D  +RF          +      P         +         R+L GA
Sbjct: 274 -EHYNLPLILVDASDRF--------IGALEGESDPEKKRKTIGRLFIEVFEEEARKLGGA 324

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +          +  +           +    ++    L  PL ++ K+
Sbjct: 325 DFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLRELFKD 377

Query: 199 SVRDLAREMGLD 210
            VR L +E+GL 
Sbjct: 378 EVRLLGKELGLP 389


>gi|182439759|ref|YP_001827478.1| argininosuccinate synthase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326780423|ref|ZP_08239688.1| Argininosuccinate synthase [Streptomyces cf. griseus XylebKG-1]
 gi|229889923|sp|B1W3B3|ASSY_STRGG RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|62896366|emb|CAH94388.1| argininosuccinate synthase ArgG [Streptomyces griseus subsp.
           griseus]
 gi|178468275|dbj|BAG22795.1| putative argininosuccinate synthase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660756|gb|EGE45602.1| Argininosuccinate synthase [Streptomyces cf. griseus XylebKG-1]
          Length = 397

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 65/202 (32%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R      L++  R+ GA
Sbjct: 52  LACGAVEAEVADARDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKHLVAAARKHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
             +A G                   C       DQ  F    +          P+ D   
Sbjct: 112 GTVAHG-------------------CTGK--GNDQVRFEAGISALGPDLKCIAPVRDYAM 150

Query: 198 ESVRDLA--REMGLDIADKSDS 217
              R +A   E  L IA    S
Sbjct: 151 TRDRAIAFCEEKNLPIATTRKS 172


>gi|124266815|ref|YP_001020819.1| GMP synthase [Methylibium petroleiphilum PM1]
 gi|226739641|sp|A2SG95|GUAA_METPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|124259590|gb|ABM94584.1| GMP synthase (glutamine-hydrolyzing) [Methylibium petroleiphilum
           PM1]
          Length = 534

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 36/198 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +              
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDRLTCVFVDHGLLRLNEGDMVMEMF------------ 272

Query: 77  RRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                 ++      D  E F N    V  P A     G   +          F    +  
Sbjct: 273 ---AGKLHAKVVRVDAAELFMNELAGVADPEAKRKIIGRLFVDV--------FKAEAAKL 321

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL 192
           +  GA         +  +Y            +   ++   +  +     +QL   L  PL
Sbjct: 322 KASGAGHRGATFLAQGTIYPDVIESGGAKTKKATTIKSHHN--VGGLP-EQLGLKLLEPL 378

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 379 RDLFKDEVRELGVALGLP 396


>gi|270284207|ref|ZP_05965742.2| argininosuccinate synthase [Bifidobacterium gallicum DSM 20093]
 gi|270277327|gb|EFA23181.1| argininosuccinate synthase [Bifidobacterium gallicum DSM 20093]
          Length = 427

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 17/145 (11%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
           VV +   ++    DKN    R+V+A SGG+D+SV    LK   G DV+ V+L +    ++
Sbjct: 5   VVEKGFPMSDTAQDKN----RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGES 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                     + + +    C    V  Y+ D  + F     +    + A  E   P V  
Sbjct: 61  ---------LETIKERALACGA--VESYIVDARDEFAEEYCMMALKANAMYEDVYPLVSA 109

Query: 121 -NRTVKFSDLLSVTRQLGADVLATG 144
            +R +    L+    Q GAD +A G
Sbjct: 110 ISRPLITKHLVRAAHQFGADTIAHG 134


>gi|304388468|ref|ZP_07370574.1| GMP synthase [Neisseria meningitidis ATCC 13091]
 gi|304337585|gb|EFM03748.1| GMP synthase [Neisseria meningitidis ATCC 13091]
          Length = 521

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V   ++    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAKEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTQKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|126699388|ref|YP_001088285.1| hypothetical protein CD1779 [Clostridium difficile 630]
 gi|255100916|ref|ZP_05329893.1| hypothetical protein CdifQCD-6_08894 [Clostridium difficile
           QCD-63q42]
 gi|255306806|ref|ZP_05350977.1| hypothetical protein CdifA_09447 [Clostridium difficile ATCC 43255]
 gi|115250825|emb|CAJ68649.1| conserved hypothetical protein [Clostridium difficile]
          Length = 267

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 65/205 (31%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDA 76
           VVVA SGGVDS+    LLK      G +VI VT+   +++SR+             + +A
Sbjct: 20  VVVAYSGGVDSN---FLLKVAKDTLGENVIAVTIHAMMHSSRE-------------IEEA 63

Query: 77  RRVCDTINVSHYVFDYE----ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++      V H + + E    + F+   +               C  C + + FS +  V
Sbjct: 64  KQYTQNFGVKHIILNIENFDLKEFKENGVDR-------------CYHCKKYI-FSKIKEV 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +  G        + D G  R  +    +L                  +  PL
Sbjct: 110 AKEHNIKYIVDG------TNIDDLGDYRPGLKALSELG-----------------VISPL 146

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            D  +KKE +R L++ +GL+  +K 
Sbjct: 147 KDSSLKKEEIRSLSKTLGLNTFNKP 171


>gi|58581818|ref|YP_200834.1| GMP synthase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426412|gb|AAW75449.1| glutamine amidotransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 537

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 242 VILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF-AE 291

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----- 136
            + V     +  +R+              G +     +  R +  +  + +  +      
Sbjct: 292 HMGVKVIRVNAADRYFAK---------LEGVS---DPEAKRKIIGNLFVEIFDEESNTLA 339

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +           + +           +    Q     L  PL ++ 
Sbjct: 340 NAKWLAQGTIYPDVIESAGSKTGNAHVIKSHHN-------VGGLPQHMKLGLVEPLRELF 392

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 393 KDEVRRLGVELGLP 406


>gi|291440707|ref|ZP_06580097.1| argininosuccinate synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291343602|gb|EFE70558.1| argininosuccinate synthase [Streptomyces ghanaensis ATCC 14672]
          Length = 404

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 67/212 (31%), Gaps = 39/212 (18%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +  ++ P   RVV+A SGG+D+SV    + +  G +VI V                   G
Sbjct: 1   MHCEEKPVTERVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGG 48

Query: 71  QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSD 128
           +D+   R+       V   V D  + F     +P   + A      P V   +R      
Sbjct: 49  EDLDVIRKRALACGAVEAEVADARDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKH 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-D 187
           L++   + GA  +A G                   C       DQ  F            
Sbjct: 109 LVAAAHKHGATTVAHG-------------------CTGK--GNDQVRFEAGIVALAPDLK 147

Query: 188 LRFPLGDM--KKESVRDLAREMGLDIADKSDS 217
              P+ D    ++       E GL IA    S
Sbjct: 148 CIAPVRDYAMTRDKAIAFCEEKGLPIATTKKS 179


>gi|114706565|ref|ZP_01439466.1| GMP synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537957|gb|EAU41080.1| GMP synthetase [Fulvimarina pelagi HTCC2506]
          Length = 518

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 41/207 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+  +SGGVDSSV A L+    G  +  +                     
Sbjct: 213 EIREKVGDGKVICGLSGGVDSSVAAVLIHEAIGDQLTCIF--------------VDHGLL 258

Query: 72  DVYDARRVC----DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTV 124
            + +A  V     D  N+       E+ F +A+             G             
Sbjct: 259 RLNEAEEVVSMFRDHYNIPLVHVQAEDTFVDALEGEMDPEVKRKTIGRLF---------- 308

Query: 125 KFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
                 +  ++L GAD LA G      +          +  +           +    ++
Sbjct: 309 -IETFEAEAKKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPER 360

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR L +E+GL 
Sbjct: 361 MNMQLVEPLRELFKDEVRILGKELGLP 387


>gi|188582356|ref|YP_001925801.1| GMP synthase [Methylobacterium populi BJ001]
 gi|179345854|gb|ACB81266.1| GMP synthase, large subunit [Methylobacterium populi BJ001]
          Length = 521

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V+  +SGGVDSSV A L+    G  +  V      ++L    +                
Sbjct: 225 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRLGEGEEV--------------- 269

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            R   D  N+     + ++ F      V  P       G                   + 
Sbjct: 270 VRLFRDHYNIPLVHVEAQDLFIGALEGVDDPEVKRKTIGRLF-----------IDVFEAE 318

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +++ GA  LA G      +          +  +           +    ++    L  P
Sbjct: 319 AKKIGGAAFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMRLVEP 371

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L +E+GL 
Sbjct: 372 LRELFKDEVRLLGKELGLP 390


>gi|46579456|ref|YP_010264.1| GMP synthase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602993|ref|YP_967393.1| GMP synthase [Desulfovibrio vulgaris DP4]
 gi|50400347|sp|Q72D86|GUAA_DESVH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738438|sp|A1VEV0|GUAA_DESVV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46448870|gb|AAS95523.1| GMP synthase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563222|gb|ABM28966.1| GMP synthase (glutamine-hydrolyzing) [Desulfovibrio vulgaris DP4]
 gi|311233272|gb|ADP86126.1| GMP synthase, large subunit [Desulfovibrio vulgaris RCH1]
          Length = 515

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 38/205 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
           ++ +   D  VV A+SGG+DS+VVA LL +  G  +  +      L+L N  +       
Sbjct: 211 EMAEVVGDRHVVCALSGGIDSTVVAVLLHKAIGKQLHCIFVDNGVLRL-NEGQEVVDYLR 269

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                ++   +     ++   +  D  E+ +  +I                         
Sbjct: 270 EHFDLNLKYVQAQERFLS-KLHGVDDPEQ-KRKIIGYTFIE------------------- 308

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                  + LG  D LA G  +   +      K    + +           +    ++  
Sbjct: 309 -VFDEEAKALGHVDFLAQG-TLYPDVIESVSHKGPSAVIKSHHN-------VGGLPEKMN 359

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +A E+GL 
Sbjct: 360 LKLIEPLRELFKDEVRKVAAELGLP 384


>gi|254242459|ref|ZP_04935781.1| GMP synthase [Pseudomonas aeruginosa 2192]
 gi|126195837|gb|EAZ59900.1| GMP synthase [Pseudomonas aeruginosa 2192]
          Length = 525

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                
Sbjct: 229 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVVRRQRLLRLHEGDQVMAMF----------- 277

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + + V     + E++F      V  P       G T +                 
Sbjct: 278 ----AENMGVKVIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEV-----------FDEE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L     LA G      +        +  + +           +    +    +L  P
Sbjct: 323 ATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPEDMQFELVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LRELFKDEVRKIGLELGLP 394


>gi|119473739|ref|XP_001258745.1| GMP synthase [Neosartorya fischeri NRRL 181]
 gi|119406898|gb|EAW16848.1| GMP synthase [Neosartorya fischeri NRRL 181]
          Length = 539

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 26/196 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
            V+ A+SGGVDS+V A L+K      IG      +   A      C    +    A  + 
Sbjct: 232 HVLGAVSGGVDSTVAAKLMKEA----IG------DRFHAVLVNNGCMRLNECETVAETLN 281

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TR- 134
             + ++  V D  +RF +    V  P       G T    V      K   L      + 
Sbjct: 282 KHLGINLTVVDACKRFLDGLKGVTDPEKKRMFIGATF-IDVFEEEAEKIEALAEHSGAKV 340

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +           I S  + G     +         +R          + Q   L  PL +
Sbjct: 341 KWFLQGTLYPDVIESISFKGPSATIKTHHNVGALPKR--------MIEGQGMKLIEPLRE 392

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L RE+G+ 
Sbjct: 393 LFKDEVRQLGRELGIA 408


>gi|307243697|ref|ZP_07525837.1| GMP synthase (glutamine-hydrolyzing) [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492906|gb|EFM64919.1| GMP synthase (glutamine-hydrolyzing) [Peptostreptococcus stomatis
           DSM 17678]
          Length = 511

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 41/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + + A+SGGVDSSV AAL+ R  G ++  V     +     K +G         D  R
Sbjct: 215 DKKALCALSGGVDSSVAAALMHRAIGDNLTCVF---VDHGLLRKNEGD--------DVER 263

Query: 79  VCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVT 133
           +      ++    + E+RF             AG T  P  +  R +          + +
Sbjct: 264 IFRQKFGMNLIRVNAEDRFLGK---------LAGVT-EP--EAKRKIIGEEFIRVFEAES 311

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFP 191
           ++LG  D L  G        + + G       +           +    +     ++  P
Sbjct: 312 QKLGKMDFLVQG---TIYPDIVESGNGESATIKSHHN-------VGGLPEDVDFQEIIEP 361

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+G++
Sbjct: 362 LRELFKDEVRKIGLELGIE 380


>gi|254672472|emb|CBA05920.1| GMP synthase [Neisseria meningitidis alpha275]
          Length = 543

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|126179558|ref|YP_001047523.1| ExsB family protein [Methanoculleus marisnigri JR1]
 gi|125862352|gb|ABN57541.1| ExsB family protein [Methanoculleus marisnigri JR1]
          Length = 257

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 42/193 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA+SGG DSSV+ AL +  G  VI +                     ++  AR++ + 
Sbjct: 17  VAVALSGGTDSSVLLALARHHGIQVIAI-----------SVDTGLTPPGELAAARKLSER 65

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H V   +     AV             P  C  C R +    +++  R+ G   + 
Sbjct: 66  LGLPHVVIPLDMLDIPAV---------RENRPDRCYVCKRAM-MEAIVAEARRQGCRTVV 115

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G +        DD    R   R +     +S F                  M K  V  
Sbjct: 116 DGTHA-------DDRPAARPGMRVLSELGIKSPFAE--------------CGMGKADVEA 154

Query: 203 LAREMGLDIADKS 215
           LARE+G+ +   S
Sbjct: 155 LARELGVPVRPPS 167


>gi|288573314|ref|ZP_06391671.1| argininosuccinate synthase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569055|gb|EFC90612.1| argininosuccinate synthase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 411

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+SV    L   GYDV+ +T  +  S    ++K              
Sbjct: 4   KKGKVVLAYSGGLDTSVAVCWLMERGYDVVTLTADVGQSVNLEEKKAKSLQTG------A 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           V        YV D +++F    + P   +    +   P     +R +    L  V +  G
Sbjct: 58  VAA------YVMDLKKQFVQEFVWPALKANGMYQGTYPLSSALSRPLISQQLAWVAKNEG 111

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 112 AVAVAHG 118


>gi|198277561|ref|ZP_03210092.1| hypothetical protein BACPLE_03783 [Bacteroides plebeius DSM 17135]
 gi|198270059|gb|EDY94329.1| hypothetical protein BACPLE_03783 [Bacteroides plebeius DSM 17135]
          Length = 402

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   EKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKKNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GA  +A G
Sbjct: 111 EIGAHAIAHG 120


>gi|229553236|ref|ZP_04441961.1| GMP synthase [Lactobacillus rhamnosus LMS2-1]
 gi|258540150|ref|YP_003174649.1| GMP synthase [Lactobacillus rhamnosus Lc 705]
 gi|229313322|gb|EEN79295.1| GMP synthase [Lactobacillus rhamnosus LMS2-1]
 gi|257151826|emb|CAR90798.1| GMP synthase [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVV  LL +     IG  L          RKG          A +V
Sbjct: 222 DKRVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKGE---------AEQV 268

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            D++     ++    + ++RF N            G T     +  R +   D +     
Sbjct: 269 MDSLKGKFGLNIIKVNAKDRFLND---------LKGVT---DPEKKRKIIGRDFIEVFNE 316

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + LA G      +  G D  +     +           +    +     L  
Sbjct: 317 EAAKLNGIEFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGLPEDLKFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR+L  ++G+ 
Sbjct: 367 PLNKLFKDEVRELGEKLGMP 386


>gi|302379961|ref|ZP_07268440.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312187|gb|EFK94189.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna ACS-171-V-Col3]
          Length = 510

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D +V++A+SGGVDSSV AALL R  G ++  V     +     K +G       
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCAALLSRAIGKNLTCVF---VDHGLMRKNEGDEVEAAF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D         ++    + ++RF N +                 +     ++       
Sbjct: 266 KND--------ELNFVRVNAKDRFLNKLKGVSDPEQKRK------IIGEEFIRV--FEDE 309

Query: 133 TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++G  D LA G        V + G+    + +           +          DL  
Sbjct: 310 AKKIGSVDFLAQG---TIYPDVIESGQGDASVIKSHHN-------VGGLPDVVDFKDLIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR L  E+ + 
Sbjct: 360 PLRDLFKDEVRRLGLELEMP 379


>gi|169824011|ref|YP_001691622.1| GMP synthase [Finegoldia magna ATCC 29328]
 gi|254800099|sp|B0S0S7|GUAA_FINM2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167830816|dbj|BAG07732.1| GMP synthase [Finegoldia magna ATCC 29328]
          Length = 510

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D +V++A+SGGVDSSV AALL R  G ++  V     +     K +G       
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCAALLSRAIGKNLTCVF---VDHGLMRKNEGDEVEAAF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D         ++    + ++RF N +                 +     ++       
Sbjct: 266 KND--------ELNFVRVNAKDRFLNKLKGVSDPEQKRK------IIGEEFIRV--FEDE 309

Query: 133 TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++G  D LA G        V + G+    + +           +          DL  
Sbjct: 310 AKKIGSVDFLAQG---TIYPDVIESGQGDASVIKSHHN-------VGGLPDVVDFKDLIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR L  E+ + 
Sbjct: 360 PLRDLFKDEVRRLGLELEMP 379


>gi|167469978|ref|ZP_02334682.1| GMP synthase [Yersinia pestis FV-1]
          Length = 353

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   D  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 49  LREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFG-- 106

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
                        D   ++      E+RF             +  T +   +  R +   
Sbjct: 107 -------------DKFGLNIVHVAAEDRF------------LSALTGVDEPEAKRKIIGR 141

Query: 126 -FSDLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            F +L      +Q     LA G      +        +  + +           +    +
Sbjct: 142 VFVELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPK 194

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL ++ K+ VR +  E+GL 
Sbjct: 195 EMKLGLVEPLKELFKDEVRKIGLELGLP 222


>gi|121608224|ref|YP_996031.1| GMP synthase [Verminephrobacter eiseniae EF01-2]
 gi|121552864|gb|ABM57013.1| GMP synthase (glutamine-hydrolyzing) [Verminephrobacter eiseniae
           EF01-2]
          Length = 539

 Score = 59.4 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 44/202 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL++R  G  +  V     +       +G       V D      
Sbjct: 230 VILGLSGGVDSSVAAALIQRAIGAQLTCVF---VDHGLLRLNEGD-----MVMD--MFAG 279

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--------- 132
            +       D  E F +           AG +     +  R +     + V         
Sbjct: 280 RLQARVIRVDASESFLSR---------LAGVS---DPEAKRKIIGGLFIEVFKTEAAKLK 327

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DL 188
                  GA  LA G      +  G    ++ +  +           +     +QL   L
Sbjct: 328 ANNAEHRGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKL 379

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D+ K+ VR+L   +GL 
Sbjct: 380 LEPLRDLFKDEVRELGLALGLP 401


>gi|269795521|ref|YP_003314976.1| argininosuccinate synthase [Sanguibacter keddieii DSM 10542]
 gi|269097706|gb|ACZ22142.1| argininosuccinate synthase [Sanguibacter keddieii DSM 10542]
          Length = 414

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 39/200 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +R G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAERTGAEVIAV------------AVDVGQGGEDLEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D  + F     +P   +        P V   +R +    L+   RQ  A
Sbjct: 52  LDCGAVEAYVADARDEFAEEYCMPALRANGLYLDRYPLVSAISRPIIVKHLVRAARQFDA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
             +A G                   C       DQ  F    T          P+ D  +
Sbjct: 112 QTVAHG-------------------CTGK--GNDQVRFEVGITSLAPDLKCLAPVRDLAL 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            +E     A +  L IA   
Sbjct: 151 TREKAIAYAEQHKLPIATTK 170


>gi|227824153|ref|YP_002828126.1| GMP synthase [Sinorhizobium fredii NGR234]
 gi|254800111|sp|C3MCS5|GUAA_RHISN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|227343155|gb|ACP27373.1| glutamine-hydrolyzing GMP synthase [Sinorhizobium fredii NGR234]
          Length = 520

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 66/204 (32%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +V+ A+SGGVDSSV A L+       +G         + +         +  
Sbjct: 216 IRKQVGGKKVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKD 263

Query: 74  YDARRVC---DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
             A  V    +  N+     D  +RF      V  P       G   +            
Sbjct: 264 EAANVVAMFQEHYNLHLLHIDASDRFIGELEGVSDPETKRKIIGRLFIEV---------- 313

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 ++LG AD LA G      +          +  +           +    ++   
Sbjct: 314 -FEEEAKKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNM 365

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR L RE+GL 
Sbjct: 366 QLVEPLRELFKDEVRVLGRELGLP 389


>gi|148926972|ref|ZP_01810649.1| putative NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845056|gb|EDK22153.1| putative NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 254

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 47/190 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++VA L K+  G +V  + +                  +++ DA ++C 
Sbjct: 32  VVLGLSGGIDSALVATLCKKALGENVFALLM-----------PTKFSNQENLNDALKLCQ 80

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            +N+ + + + ++     ++  F       E        N    ++ S L   +      
Sbjct: 81  ELNLKYKIIEIQD-----ILEAFL---KQSENTDELSRGNFAARIRMSLLYDYS------ 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                  ++  L VG   K   ++              + T    L     P+G++ K  
Sbjct: 127 ------ALKKALVVGTSNKSELLL-------------GYGTIYGDLAYAFNPIGELYKSE 167

Query: 200 VRDLAREMGL 209
           +  LAR + L
Sbjct: 168 IYGLARYLNL 177


>gi|57167809|ref|ZP_00366949.1| NAD+ synthetase [Campylobacter coli RM2228]
 gi|305432169|ref|ZP_07401333.1| NAD+ synthetase [Campylobacter coli JV20]
 gi|57020931|gb|EAL57595.1| NAD+ synthetase [Campylobacter coli RM2228]
 gi|304444712|gb|EFM37361.1| NAD+ synthetase [Campylobacter coli JV20]
          Length = 248

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 47/190 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++VA L K+  G +V  + +                  +++ DA ++C 
Sbjct: 26  VVLGLSGGIDSALVATLCKKALGENVFALLM-----------PTKFSNQENLNDALKLCQ 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            +N+ + + + ++     ++  F       E        N    ++ S L   +      
Sbjct: 75  ELNLKYKIIEIQD-----ILEAFL---KQSENTDELSRGNFAARIRMSLLYDYS------ 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                  ++  L VG   K   ++              + T    L     P+G++ K  
Sbjct: 121 ------ALKKALVVGTSNKSELLL-------------GYGTIYGDLAYAFNPIGELYKSE 161

Query: 200 VRDLAREMGL 209
           +  LAR + L
Sbjct: 162 IYGLARYLNL 171


>gi|302671492|ref|YP_003831452.1| NAD synthetase NadE [Butyrivibrio proteoclasticus B316]
 gi|302395965|gb|ADL34870.1| NAD synthetase NadE [Butyrivibrio proteoclasticus B316]
          Length = 269

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 59/269 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG DS++VAALL R  G + V+GV +                  +D+ D+++V +
Sbjct: 34  VVGISGGKDSTIVAALLTRALGKERVVGVLM-----PDGE--------QKDIDDSKKVVE 80

Query: 82  TINVSHYVFD--------YEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKF 126
            + + +YV +        YE      V  PF+S             +    ++    ++ 
Sbjct: 81  LLGIKNYVVNIHPAVAGLYEAIGNAKVTDPFSSEDEKTGEDSKNALSKDSMINTPPRIRM 140

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC-RPMDLERDQSYFLFATTQQQL 185
           + L ++ + L                   +G R    C R  D      Y  ++T     
Sbjct: 141 ATLYAIAQSL------------------PNGGRVANTCNRSED------YVGYSTKYGDA 176

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIA--DKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
                P  D     +R +   +GL      K+ S  +  +                   G
Sbjct: 177 AGDFSPCSDFTVTEMRLIGDALGLPAELIHKTPSDGLSGMSDEDKLGFTYDELDRYIFTG 236

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV 272
            +   + +   + + +    + + R + +
Sbjct: 237 VLEDEDKKK--KIDHLHAINLHKLRLMPM 263


>gi|285018664|ref|YP_003376375.1| argininosuccinate synthase [Xanthomonas albilineans GPE PC73]
 gi|283473882|emb|CBA16384.1| probable argininosuccinate synthase protein [Xanthomonas
           albilineans]
          Length = 406

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
              P  + +V+A SGG+D+S     L+  GY V  V          +   G     +D  
Sbjct: 7   ASRPGAIDIVLAFSGGLDTSFCIPYLQEQGYAVHTVF---------ADTGGVDEDERDFI 57

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           + +R  +    SH   D      N  + PF  +    +   P +  +R +     L    
Sbjct: 58  E-KRAAELGAASHVTVDGGPAIWNGFVKPFVQAGEGYQGQYPLLVSDRYLIVDAALKRAD 116

Query: 135 QLGADVLATG 144
           +LG   +A G
Sbjct: 117 ELGTKHIAHG 126


>gi|260828723|ref|XP_002609312.1| hypothetical protein BRAFLDRAFT_124725 [Branchiostoma floridae]
 gi|229294668|gb|EEN65322.1| hypothetical protein BRAFLDRAFT_124725 [Branchiostoma floridae]
          Length = 383

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D +VV+A SGG+D+S +   L   G+DVI   +                  +D  +A+ 
Sbjct: 3   EDKKVVLAYSGGLDTSCILVWLIEQGFDVIA-YMA------------DVGQEEDFAEAKE 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDL 129
               +     Y+ D +++F +  I P           Y  G     PC+   +       
Sbjct: 50  KALKLGAKKVYIEDLKKQFVDEYIWPAVQANAIYEDRYLMGTAVARPCIARRQ------- 102

Query: 130 LSVTRQLGADVLATG 144
           + V ++ GA  ++ G
Sbjct: 103 VEVAKKEGAQYVSHG 117


>gi|169774339|ref|XP_001821637.1| GMP synthase [glutamine-hydrolyzing] [Aspergillus oryzae RIB40]
 gi|238497143|ref|XP_002379807.1| GMP synthase [Aspergillus flavus NRRL3357]
 gi|121802477|sp|Q2UFN0|GUAA_ASPOR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83769500|dbj|BAE59635.1| unnamed protein product [Aspergillus oryzae]
 gi|220694687|gb|EED51031.1| GMP synthase [Aspergillus flavus NRRL3357]
          Length = 541

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 54/210 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDV---IGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+K   G   + V    G  ++L            C   +    
Sbjct: 233 VLGAVSGGVDSTVAAKLMKEAIGDRFHAVLVDTG-FMRL----------NECEQVK---- 277

Query: 76  ARRVCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAGETPLPCVDCNR 122
            + + + + ++  V D  + F            +   I   F   +      +     + 
Sbjct: 278 -QTLAEHLGINLIVADASQVFMEGLKGISDPEQKRKFIGNKFIDVFEEEAKKIEDAAAHS 336

Query: 123 TV--KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
               K    L  T             I S  + G     +         +R         
Sbjct: 337 ETAGKIGFFLQGTL--------YPDVIESISFKGPSATIKTHHNVGGLPKR--------M 380

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           T+ Q   L  PL ++ K+ VRDL R++G+ 
Sbjct: 381 TEGQGLKLIEPLRELFKDEVRDLGRQLGIA 410


>gi|224073526|ref|XP_002195318.1| PREDICTED: argininosuccinate synthetase 1 [Taeniopygia guttata]
          Length = 397

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDV+   L                  +D   ARR    
Sbjct: 8   VVLAYSGGLDTSCILVWLKEQGYDVVA-YLANI------------GQKEDFEAARRKALA 54

Query: 83  INV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSVT 133
           +     Y+ D    F    I P   + A  E           PC+          L+ + 
Sbjct: 55  LGAKKVYIEDISREFVEKFIWPAVQANALYEDRYLLGTALARPCIA-------RGLVGIA 107

Query: 134 RQLGADVLATG 144
           +Q GA  +A G
Sbjct: 108 QQEGAQHIAHG 118


>gi|260588671|ref|ZP_05854584.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|331081980|ref|ZP_08331108.1| hypothetical protein HMPREF0992_00032 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541146|gb|EEX21715.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|330405575|gb|EGG85105.1| hypothetical protein HMPREF0992_00032 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 282

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 74/224 (33%), Gaps = 64/224 (28%)

Query: 23  VVVAMSGGVDSSVVAALLKR-------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +A SGGVDSS++  L K         G ++  VT                    D+  
Sbjct: 23  ICIAFSGGVDSSLLLMLAKECMKQQKKAG-NIHAVTFHTVLHPPC-----------DLEI 70

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLP---CVDCNRTVKFSDLLS 131
           A++V       H V              F +     E    P   C  C +T+ F  LL 
Sbjct: 71  AQKVAKEAGAVHKVV-------------FVNELEQEEIRFNPKDRCYLCKKTL-FQKLLE 116

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  G  V+  G          DD    R   R +               ++L  +  P
Sbjct: 117 YAKSQGISVVMEG-------TNEDDLHVYRPGLRAI---------------KELG-VFSP 153

Query: 192 LGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           L +    KE VR LA E+ + +A +  +   C   +  Y   +K
Sbjct: 154 LAEAGFTKEEVRKLAEELSVSVASRPSTP--CLATRLPYGTEIK 195


>gi|219667442|ref|YP_002457877.1| ExsB family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537702|gb|ACL19441.1| ExsB family protein [Desulfitobacterium hafniense DCB-2]
          Length = 267

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 56/218 (25%)

Query: 7   TRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
            +LN   L +  K+M  VVVA SGGVDS+    LLK   ++ +G      +   A     
Sbjct: 3   AKLN--HLKQIIKEMEAVVVAFSGGVDST---FLLKVA-HETLG------DHCLAVIGAS 50

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTV 124
                 D  +A +          V + EE  +   +          + P   C  C   +
Sbjct: 51  ETMPSADYNNALQQAKEFGAKFLVIETEEMGKEEFV----------KNPQNRCFHCKNEL 100

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            F+ LL + ++   + +  G                       D  +D    +      Q
Sbjct: 101 -FTKLLGIAQEKKINWVLDGSNA--------------------DDLKDYRPGM------Q 133

Query: 185 LCDLR---FPLGD--MKKESVRDLAREMGLDIADKSDS 217
                    PL +  + KE +R L+++MGL   DK  S
Sbjct: 134 AARALGIRSPLQEAGLSKEEIRQLSKKMGLSTWDKPSS 171


>gi|89896728|ref|YP_520215.1| hypothetical protein DSY3982 [Desulfitobacterium hafniense Y51]
 gi|89336176|dbj|BAE85771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 267

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 56/218 (25%)

Query: 7   TRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
            +LN   L +  K+M  VVVA SGGVDS+    LLK   ++ +G      +   A     
Sbjct: 3   AKLN--HLKQIIKEMEAVVVAFSGGVDST---FLLKVA-HETLG------DHCLAVIGAS 50

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTV 124
                 D  +A +          V + EE  +   +          + P   C  C   +
Sbjct: 51  ETMPSADYNNALQQAKEFGAKFLVIETEEMGKEEFV----------KNPQNRCFHCKNEL 100

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            F+ LL + ++   + +  G                       D  +D    +      Q
Sbjct: 101 -FTKLLGIAQEKKINWVLDGSNA--------------------DDLKDYRPGM------Q 133

Query: 185 LCDLR---FPLGD--MKKESVRDLAREMGLDIADKSDS 217
                    PL +  + KE +R L+++MGL   DK  S
Sbjct: 134 AARALGIRSPLQEAGLSKEEIRQLSKKMGLSTWDKPSS 171


>gi|254487519|ref|ZP_05100724.1| GMP synthase (glutamine-hydrolyzing) [Roseobacter sp. GAI101]
 gi|214044388|gb|EEB85026.1| GMP synthase (glutamine-hydrolyzing) [Roseobacter sp. GAI101]
          Length = 520

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            RKG   A + V   R 
Sbjct: 222 DAKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDHGLLRKGE--AEEVVTMFR- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             D  N+     D ++ F            +  ET    +     +           +G 
Sbjct: 274 --DNYNMPLIHADEQDLFLGE-----LDGVSDPETKRKIIG---RLFIDVFQKHATAVGD 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 324 AKFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 376

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 377 DEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 411


>gi|170757538|ref|YP_001780806.1| hypothetical protein CLD_3386 [Clostridium botulinum B1 str. Okra]
 gi|169122750|gb|ACA46586.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum B1
           str. Okra]
          Length = 272

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+    LL +   + +G      ++  +           ++ +A+ + + 
Sbjct: 24  VAVAFSGGVDST----LLLKAAKEALG------DNAISITVVSPYIPKWEIKEAKELANN 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 74  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKEKGVK 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 119 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 157

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++E+GL+  +K      C + +  Y   +K 
Sbjct: 158 IRTLSKELGLETWNKP--AYACLLSRIPYNQEIKE 190


>gi|153955119|ref|YP_001395884.1| hypothetical protein CKL_2501 [Clostridium kluyveri DSM 555]
 gi|219855555|ref|YP_002472677.1| hypothetical protein CKR_2212 [Clostridium kluyveri NBRC 12016]
 gi|146347977|gb|EDK34513.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569279|dbj|BAH07263.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 274

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDS+     L R  ++V+G      +   A     S    +++ +A +    +
Sbjct: 21  AVAFSGGVDST----FLVRVAHEVLG------DKLIAVTATSSTYPERELKEAIKYAKDM 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           +V H +   EE      I  F     A      C  C + + F+ +  V  +   + +  
Sbjct: 71  SVKHLIISSEELD----IEGF-----ASNPKNRCYYCKKEL-FTKIKKVAEENDVEYVFD 120

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G          D G  R  M    +LE                 +  PL +  + K  +R
Sbjct: 121 G------SNFDDTGDYRPGMQAAKELE-----------------VISPLKEANLTKADIR 157

Query: 202 DLAREMGLDIADKS 215
           +L++E+GL   +K 
Sbjct: 158 ELSKELGLPTWNKP 171


>gi|313113561|ref|ZP_07799149.1| GMP synthase protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624076|gb|EFQ07443.1| GMP synthase protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 524

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 36/209 (17%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSR--KASKRKGS 66
           N   L +   D +V+ A+SGGVDSSV+AA+L +  G  +  V     +    + ++++  
Sbjct: 213 NVKALRERIGDGKVLCALSGGVDSSVLAAMLAKAIGKQLTCVF---VDHGLLRKNEKEEV 269

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C             +  +++    D  ER+   +                 +     ++ 
Sbjct: 270 CSVFGPGN-----ANGFDINFICVDARERYFAKLAGVTEPERKRK------IIGEEFIRV 318

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATT 181
                  +++G  D LA G      +  G  G+    +       +    D         
Sbjct: 319 --FEEQAKKIGKVDFLAQGTIYPDVVESGLGGESTVIKSHHNVGGLPDTVD--------- 367

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL ++ K+ VR   RE+GL 
Sbjct: 368 ---FKELVEPLRNLFKDEVRQAGRELGLP 393


>gi|302391059|ref|YP_003826879.1| PP-loop domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203136|gb|ADL11814.1| PP-loop domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 272

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 46/215 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS+    LL +  +D++G      +   A   + S     +  +A  +   +
Sbjct: 22  LVAFSGGVDST----LLLKVAHDILG------DQAAALTVEASIHPPGEAEEAEELAQQM 71

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V H + +           P  +   A    L C  C   + FSDL  +  + G   LA 
Sbjct: 72  GVEHILVEA---------DPLQNEDFARNDKLRCYYCKYNI-FSDLKEIAAKEGYAELAD 121

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESVR 201
           G       Y    G  R  +    +L                  +R PL   ++ KE VR
Sbjct: 122 G-----ANYDDFTGDYRPGLKAAEELG-----------------VRSPLKEAEITKEEVR 159

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
            L++ + L   DK      C+  +  Y   + + N
Sbjct: 160 KLSKRLDLPTWDKPSL--SCYATRFPYGSKITKQN 192


>gi|260435923|ref|ZP_05789893.1| GMP synthase [Synechococcus sp. WH 8109]
 gi|260413797|gb|EEX07093.1| GMP synthase [Synechococcus sp. WH 8109]
          Length = 528

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 NKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               N+     +  +RF              G T     +  R +            +++
Sbjct: 276 -RKFNIHVEYINARQRFIGK---------LKGIT---DPEEKRKIIGTEFIRVFEEESKR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + R +GL 
Sbjct: 381 KLFKDEVRKVGRSLGLP 397


>gi|255324647|ref|ZP_05365764.1| argininosuccinate synthase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298553|gb|EET77853.1| argininosuccinate synthase [Corynebacterium tuberculostearicum
           SK141]
          Length = 406

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G DV+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGDVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     VP   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFAEEYCVPTIKANGMYMKQYPLVSAISRPLITKHLVKAAQEFG- 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
                 H        G+D  R  +  R  D   +               +  P  D    
Sbjct: 111 ----GTHVSHGCTGKGNDQVRFEVSFRAQDPSLE---------------IIAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I   + S
Sbjct: 152 RDKAIAFAEEINLPIEQSASS 172


>gi|16125867|ref|NP_420431.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caulobacter crescentus CB15]
 gi|221234629|ref|YP_002517065.1| GMP synthase [Caulobacter crescentus NA1000]
 gi|24211765|sp|Q9A7U9|GUAA_CAUCR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800091|sp|B8GVI7|GUAA_CAUCN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13423021|gb|AAK23599.1| GMP synthase [Caulobacter crescentus CB15]
 gi|220963801|gb|ACL95157.1| GMP synthase (glutamine-hydrolyzing) [Caulobacter crescentus
           NA1000]
          Length = 520

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 68/230 (29%), Gaps = 44/230 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V +     RK    +              
Sbjct: 222 DGKVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDTGLLRKNEADQVVTLFR-------- 273

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             D  N+     D  + F      V  P       G   +          F       + 
Sbjct: 274 --DHYNIPLVHVDAGDLFLGELAGVSDPETKRKTIGRLFIDV--------FDK--EAAKI 321

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  LA G      +           + +           +          L  PL ++
Sbjct: 322 EGATFLAQGTLYPDVVESVSARGGPSAVIKSHHN-------VGGLPDYMKLKLVEPLREL 374

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            K+ VR L  E+GL  A         FV +  +          I + G+I
Sbjct: 375 FKDEVRALGVELGLAPA---------FVGRHPFPG----PGLAIRIPGEI 411


>gi|15839020|ref|NP_299708.1| GMP synthase [Xylella fastidiosa 9a5c]
 gi|13627140|sp|Q9PAR6|GUAA_XYLFA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|9107620|gb|AAF85228.1|AE004052_3 glutamine amidotransferase [Xylella fastidiosa 9a5c]
          Length = 522

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 27/192 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL++  G  +  V                     D   A    +
Sbjct: 227 VILGLSGGVDSSVVAALLQKAIGSQLTCVF---------VDTGLLRWGEGDQVMAMF-AE 276

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADV 140
            + V+    +   R+ +A+   +             +  N  +  F +    +++  A  
Sbjct: 277 HMGVNVVRINAASRYFDALQGVYDPEAKRK------IIGNLFIQIFEE--EASKRKQAKW 328

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +Q    +  PL ++ K+ V
Sbjct: 329 LAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEQMTLGMVEPLRELFKDEV 381

Query: 201 RDLAREMGLDIA 212
           R L   +GL  A
Sbjct: 382 RRLGVALGLPHA 393


>gi|302412447|ref|XP_003004056.1| GMP synthase [Verticillium albo-atrum VaMs.102]
 gi|261356632|gb|EEY19060.1| GMP synthase [Verticillium albo-atrum VaMs.102]
          Length = 543

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 49/284 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ A+SGGVDS+V A L+K      IG      L ++     R   C   +       + 
Sbjct: 234 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAILVDTGLM--RLNECPQVK-----ESLA 282

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQL 136
           + + ++  + D  E F +    V+ P A     G T    +     ++            
Sbjct: 283 EHLGINLTIVDGSELFLSRLAGVLEPEAKRKIIGGTF-IDLFEIEALRIEKEAEHTALAG 341

Query: 137 GADVLATG----HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +    G      I S  + G     +          R Q+         QL  L  PL
Sbjct: 342 KVEWFLQGTLYADLIESLSFKGPSATIKSHHNAGGLPARMQN------GDAQL-KLLEPL 394

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE--GDIVHLNG 250
            ++ K+ VR   R++G+                            G+ +   GDI     
Sbjct: 395 RELFKDEVRSFGRQLGIH---------------EDLIMRHPFPGPGLGVRIIGDI-TAEK 438

Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
             + R    I  T+ +  G+   + +      LD N +  + G 
Sbjct: 439 VEITRKADFIFMTMIKEAGIYNEITQAY--AALDSNKAVGVQGD 480


>gi|294496566|ref|YP_003543059.1| NH(3)-dependent NAD(+) synthetase [Methanohalophilus mahii DSM
           5219]
 gi|292667565|gb|ADE37414.1| NH(3)-dependent NAD(+) synthetase [Methanohalophilus mahii DSM
           5219]
          Length = 260

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 40/189 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGGVDS++VA L     G + V+G+ L           + +    +DV  A  V +
Sbjct: 27  VVGISGGVDSALVAHLAVEALGAENVLGLHL----------PELNVTPPEDVLHATEVAN 76

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +     +         I     +Y A   P      N+ V   +L +  R      +
Sbjct: 77  GLGIEFRTIE---------IGGIVQTYLA-NMPGSDP-ANKYVN-GNLKARIRM----SI 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              +Y      +      +  +           Y  +      L     P+GD+ K  V 
Sbjct: 121 LY-YYANLDSRLVAGTGNKTEILLGY-------YTKYGDGGVDLE----PIGDLYKTEVF 168

Query: 202 DLAREMGLD 210
            +A   G+ 
Sbjct: 169 QMAEMTGVP 177


>gi|311740486|ref|ZP_07714313.1| argininosuccinate synthase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304006|gb|EFQ80082.1| argininosuccinate synthase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 406

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G DV+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGDVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     VP   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFAEEYCVPTIKANGMYMKQYPLVSAISRPLITKHLVKAAQEFG- 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
                 H        G+D  R  +  R  D   +               +  P  D    
Sbjct: 111 ----GTHVSHGCTGKGNDQVRFEVSFRAQDPSLE---------------IIAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I   + S
Sbjct: 152 RDKAIAFAEEINLPIEQSASS 172


>gi|199599149|ref|ZP_03212553.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus rhamnosus HN001]
 gi|199589972|gb|EDY98074.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus rhamnosus HN001]
          Length = 517

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVV  LL +     IG  L          RKG          A +V
Sbjct: 222 DKRVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKGE---------AEQV 268

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            D++     ++    + ++RF N            G T     +  R +   D +     
Sbjct: 269 MDSLKGKFGLNIIKVNAKDRFLND---------LKGVT---DPEKKRKIIGRDFIEVFNE 316

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + LA G      +  G D  +     +           +    +     L  
Sbjct: 317 EAAKLNGIEFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGLPEDLKFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR+L  ++G+ 
Sbjct: 367 PLNKLFKDEVRELGEKLGMP 386


>gi|94237991|gb|ABF13476.2| GMP synthase/glutamine amidotransferase [Arcanobacterium pyogenes]
          Length = 521

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 67/211 (31%), Gaps = 57/211 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   +  +SGGVDSSV AAL+ +  G  +  V              G    G+     R 
Sbjct: 216 DKHAICGLSGGVDSSVAAALVHKAIGDQLTCVF----------VDHGLLRKGEAEQVVRD 265

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVP----------FASSYAAGETP--LPCVDCNRT 123
              ++ +     D  ERF    + V  P          F  S+ A +           + 
Sbjct: 266 YAASLGIRVVAVDESERFLSALDGVTDPETKRKIIGREFIRSFEAAQRALVAEAGAAGKE 325

Query: 124 VKF---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           +KF     L   V    G D  A      +   + DD                       
Sbjct: 326 IKFLVQGTLYPDVVESGGGDGTANIKSHHNVGGLPDD----------------------- 362

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              + +     PL D+ K+ VR +  E+GLD
Sbjct: 363 LDFELVE----PLRDLFKDEVRAIGLELGLD 389


>gi|78356515|ref|YP_387964.1| GMP synthase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|91206806|sp|Q311X7|GUAA_DESDG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78218920|gb|ABB38269.1| GMP synthase (glutamine-hydrolyzing) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 516

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 36/197 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +VV A+SGG+DS+VVA LL +  G+ +  +      L+L    + S            
Sbjct: 219 DDQVVCALSGGIDSTVVAVLLHKAIGHRLHCIFVDNGVLRLNEVDEVSGYLR-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +  +++  V D  ERF                  +   +  R +     + V 
Sbjct: 271 -------EHFDLNLTVVDARERFMKQFAG------------VEDPEKKRKIIGYTFIDVF 311

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +    +    +  +  LY   D         P  + +   + +    +     L  PL 
Sbjct: 312 DEESQKIPNVKYLAQGTLY--PDVIESISHKGPSAVIKSH-HNVGGLPETMKLKLIEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR LA E+GL 
Sbjct: 369 ELFKDEVRKLAVELGLP 385


>gi|258508963|ref|YP_003171714.1| GMP synthase [Lactobacillus rhamnosus GG]
 gi|257148890|emb|CAR87863.1| GMP synthase [Lactobacillus rhamnosus GG]
 gi|259650257|dbj|BAI42419.1| GMP synthase/glutamine amidotransferase [Lactobacillus rhamnosus
           GG]
          Length = 517

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVV  LL +     IG  L          RKG          A +V
Sbjct: 222 DKRVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKGE---------AEQV 268

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            D++     ++    + ++RF N            G T     +  R +   D +     
Sbjct: 269 MDSLKGKFGLNIIKVNAKDRFLND---------LKGVT---DPEKKRKIIGRDFIEVFNE 316

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + LA G      +  G D  +     +           +    +     L  
Sbjct: 317 EAAKLNGIEFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGLPEDLKFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR+L  ++G+ 
Sbjct: 367 PLNKLFKDEVRELGEKLGMP 386


>gi|223557987|gb|ACM90993.1| NAD synthetase [uncultured bacterium URE4]
          Length = 245

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 43/242 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG DSSVVA L     G D VIGVT+                   D+ D+ R+ +
Sbjct: 29  VIGISGGKDSSVVAGLCVEALGVDRVIGVTMPN-------------GVQPDIDDSIRLIN 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +  Y  +    + +A++           +    ++    ++ + L +V++       
Sbjct: 76  HLGIKRYDVNIGAAY-DALMAEVERKLGHEASAQTRINMAPRLRMTALYAVSQSNNG--- 131

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                + +   + +D        R  D   D S                PLG +  + V 
Sbjct: 132 ----RVANTCNLSEDWVGYS--TRYGDAAGDFS----------------PLGGLTVQEVV 169

Query: 202 DLAREMGLDI--ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
            + +E+GL +   +K+ S  +C             +       G     + + L     +
Sbjct: 170 AIGKELGLPVDLVEKTPSDGLCGKTDEDNLGFTYAVLDRYIRTGVCEDPDTKALIDRKHV 229

Query: 260 IN 261
           +N
Sbjct: 230 MN 231


>gi|254479521|ref|ZP_05092841.1| conserved hypothetical protein TIGR00268 [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034541|gb|EEB75295.1| conserved hypothetical protein TIGR00268 [Carboxydibrachium
           pacificum DSM 12653]
          Length = 250

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 54/215 (25%)

Query: 24  VVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VA SGGVDS+    VA      G D++ VT+                  +++ +++++ 
Sbjct: 2   LVAFSGGVDSTFLAKVAYE--ELGEDMLAVTI-----------STPLHPKREIEESKKLA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGAD 139
             +   H V  YEE      I  F S       P   C  C + + FS L  +  + G  
Sbjct: 49  KVLGFPHLVVRYEEVLE---IEEFKS------NPLNRCYVCKKNL-FSKLKDIAEERGFY 98

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
            +  G    +   + D    R+ +                    +L  +  PL    + K
Sbjct: 99  YIVEG---TNADDINDFRPGRKALK-------------------ELG-ILSPLLDCGITK 135

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           E +R  ++EM L   +K      C   +  Y + +
Sbjct: 136 EEIRLFSKEMDLPTWNKPSY--ACLASRIPYGEEI 168


>gi|57640303|ref|YP_182781.1| thiamine biosynthesis protein ThiI [Thermococcus kodakarensis KOD1]
 gi|84028851|sp|Q5JCY1|THII_PYRKO RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|57158627|dbj|BAD84557.1| Thiamine biosynthesis protein ThiI [Thermococcus kodakarensis KOD1]
          Length = 381

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 48/215 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V A L+ + G +VI V +                  + +   R++
Sbjct: 180 QGKVVALLSGGIDSPVAAFLMMKRGVEVIPVHI--------------YMGEKTLEKVRKI 225

Query: 80  CDTINVSHYVFDYEERFRNAVIVP-----FASSYAA-GETPLPCVDCN-RTVKFSDLLSV 132
            + +   HY      +    V+ P             G+    CV C    VK +D   +
Sbjct: 226 WNQLKKYHY----GGKAELIVVKPQNREEMLKKIKELGKEKYTCVLCKFMMVKHAD--RI 279

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++ GA  +  G  +        +                  Y +   +   +     PL
Sbjct: 280 AKEFGAKGIVMGDSLGQVASQTLENM----------------YIVSQASDLPIYR---PL 320

Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQQG 226
             + KE + D+A+++G  +++   +  +I F+ + 
Sbjct: 321 IGLDKEEIVDIAKKIGTFELSTLPE-DEIPFIPKH 354


>gi|182418364|ref|ZP_02949659.1| PP-loop family protein [Clostridium butyricum 5521]
 gi|237666423|ref|ZP_04526408.1| PP-loop domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377746|gb|EDT75290.1| PP-loop family protein [Clostridium butyricum 5521]
 gi|237657622|gb|EEP55177.1| PP-loop domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 288

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR---DG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS ++A LL+     G   +D++ + +           +      ++
Sbjct: 52  EGDKIAVGISGGKDSMLMAKLLQELQRHGQVKFDLVFLAM-----DPGYHPEIKKLLIEN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +++  +++D    F   V+   A  Y       PC  C   ++   L + 
Sbjct: 107 -------CEHLDIPIHIYD-SGIF--EVVDRMAKDY-------PCYLC-ARMRRGSLYAK 148

Query: 133 TRQLGADVLATGHY 146
            ++ G + LA GH+
Sbjct: 149 AQEFGCNKLALGHH 162


>gi|218767506|ref|YP_002342018.1| GMP synthase [Neisseria meningitidis Z2491]
 gi|13627135|sp|Q9JW60|GUAA_NEIMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|121051514|emb|CAM07811.1| putative GMP synthetase [Neisseria meningitidis Z2491]
 gi|319409771|emb|CBY90078.1| GMP synthase [glutamine-hydrolyzing] (glutamine amidotransferase;
           GMP synthetase) [Neisseria meningitidis WUE 2594]
          Length = 521

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D E +F             AG T     +  R +  ++ + V       + 
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 +  +Y            +   ++   +  +    +     L  PL D+ K+ VR
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKDEVR 375

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 376 ELGVALGLP 384


>gi|148655490|ref|YP_001275695.1| ExsB family protein [Roseiflexus sp. RS-1]
 gi|148567600|gb|ABQ89745.1| ExsB family protein [Roseiflexus sp. RS-1]
          Length = 285

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+    LL +  +D +G      +   A+         +++  A  +   I
Sbjct: 30  LIAFSGGVDST----LLLKVAHDTLG------DRAIAATADSETYPREELEQACALAALI 79

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
              H V    +   +         YA    P  C  C RT+ F+ L  +  +LG   +  
Sbjct: 80  GCRHIVV-RTDELSD-------ERYARNH-PDRCYYCKRTL-FTHLQPLAAELGVAAILY 129

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESVR 201
           G          D G  R  +   ++                   +R PL    + K  +R
Sbjct: 130 G------AMADDIGDHRPGLRAAVEFA-----------------VRSPLIEAGLGKREIR 166

Query: 202 DLAREMGLDIADKS 215
           +LAR +GL   +K 
Sbjct: 167 ELARRLGLPNWNKP 180


>gi|319406107|emb|CBI79737.1| GMP synthase [Bartonella sp. AR 15-3]
          Length = 518

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 69/207 (33%), Gaps = 44/207 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K      VV  +SGGVDSSVVA LL    G  +  V +     RK    +      + 
Sbjct: 215 IRKKVGKSHVVCGLSGGVDSSVVAILLHEAIGDQLTCVFVDHGLMRKNEAEEVLTLFREY 274

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                      N+     +  + F N            GET     +  R +     + V
Sbjct: 275 Y----------NIKLVHVNAADMFINT---------LEGET---DPEKKRKIIGRLFIEV 312

Query: 133 TRQ-----LGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
             +      GA+ LA        I S   +G+    +                +    ++
Sbjct: 313 FEEETKKIEGAEFLAQGTLYPDVIESVSAIGEPITIKSHHN------------VGGLPER 360

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR L RE+GL 
Sbjct: 361 MKMQLIEPLRELFKDDVRSLGRELGLP 387


>gi|291523444|emb|CBK81737.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Coprococcus catus GD/7]
          Length = 329

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 42/197 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V          +         + V +  R
Sbjct: 38  DKKVLLALSGGVDSSVVAALLIKAIGQQLVCVH--------VNHGLLRKGEPEQVVEVFR 89

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             + +N +    D  +RF +           AG   +   +  R +   + + V     R
Sbjct: 90  --NQMNANLIYVDATDRFLDK---------LAG---VEDPETKRKIIGGEFIEVFAEEAR 135

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + +  +  +       L  D     F   +     + F   
Sbjct: 136 KLDGIEFLAQG---TIWPDILESEEGIKAHHNAGGLPED---MDFELVEPV--RVLF--- 184

Query: 194 DMKKESVRDLAREMGLD 210
              K+ VR +  E+GL 
Sbjct: 185 ---KDEVRVVGEELGLP 198


>gi|261403374|ref|YP_003247598.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
 gi|261370367|gb|ACX73116.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
          Length = 304

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            KD +++VA+SGG D  V A +LK+ GY++  +       +  S           +   +
Sbjct: 46  NKDEKILVAVSGGKDGHVAAWILKKLGYNIE-LFHINLGIKGFSDES--------LRAVK 96

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQ 135
            + + +N   +V D +E     +          G+    C    R +  KF        +
Sbjct: 97  ALAERLNTPLHVVDLKEITGKTIED------IRGKKCSICGITKRYLMNKFGY------E 144

Query: 136 LGADVLATGHYI 147
            G DV+ TGH +
Sbjct: 145 RGFDVIITGHNL 156


>gi|163797472|ref|ZP_02191423.1| GMP synthase (glutamine-hydrolyzing) [alpha proteobacterium BAL199]
 gi|159177221|gb|EDP61780.1| GMP synthase (glutamine-hydrolyzing) [alpha proteobacterium BAL199]
          Length = 515

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 57/194 (29%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV A L+    G  +  V                     DV   R   
Sbjct: 219 RVICGLSGGVDSSVAAVLIHEAIGDQLTCVF--------VDHGLLRAGEADDV--VRMFR 268

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           D  N+     D  E F      V  P       G                       ++ 
Sbjct: 269 DHYNIPLIARDASELFLGELEGVDDPELKRKTIGRLF-----------IDVFQQEADKIK 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +          +  +           +    ++    L  PL ++ 
Sbjct: 318 DARFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNLKLVEPLRELF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  E+GL 
Sbjct: 371 KDEVRELGCELGLP 384


>gi|91792628|ref|YP_562279.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella denitrificans OS217]
 gi|123061095|sp|Q12PS0|GUAA_SHEDO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91714630|gb|ABE54556.1| GMP synthase (glutamine-hydrolyzing) [Shewanella denitrificans
           OS217]
          Length = 525

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLLHRAIGKKLTCVFVDNGLLRLNEAEQVLEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF +A          AG   +   +  R +     + + 
Sbjct: 279 -------DHFGLNIVHVDAENRFLDA---------MAG---VADPEAKRKIIGRVFVEIF 319

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +       A  LA G      +        +  + +           +          L
Sbjct: 320 DEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDMEMGL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 373 VEPLRELFKDEVRKIGLELGLP 394


>gi|125623845|ref|YP_001032328.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345430|sp|Q9Z6H4|GUAA_LACLM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|124492653|emb|CAL97602.1| GMP synthase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070612|gb|ADJ60012.1| GMP synthase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 513

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D +V++ +SGGVDSSVV  LL+R     IG         + +         + 
Sbjct: 211 DIREKVGDKKVLLGLSGGVDSSVVGVLLQRA----IG--------DQLTSIFVDHGFLRK 258

Query: 73  VYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              A +V +T+     ++    D ++RF + ++                V          
Sbjct: 259 GE-ADQVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVY--------V 309

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +L G D LA G      +  G D  +     +           +    +     
Sbjct: 310 FDDEANKLEGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQ 359

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR L  ++G+ 
Sbjct: 360 LIEPLNTLFKDEVRALGTQLGMP 382


>gi|300933436|ref|ZP_07148692.1| argininosuccinate synthase [Corynebacterium resistens DSM 45100]
          Length = 398

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 37/203 (18%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV+A SGG+D++V    + K    +V+ V++ L               G+D+   R+
Sbjct: 2   KDRVVLAYSGGLDTTVAISWIAKERNAEVVAVSIDL------------GQGGEDMETVRQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  + F     +P   +        P V   +R +    +    ++ 
Sbjct: 50  RALGAGAVESVVVDARDEFAEEYCLPTIKANGMYMKEYPLVSAISRPLIVKHMTEAAKEH 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
           G   +A G                    +  D  R +  F       ++     P+ D  
Sbjct: 110 GGTAVAHG-----------------CTGKGNDQVRFEVGFANTAPDLEI---IAPVRDYA 149

Query: 196 -KKESVRDLAREMGLDIADKSDS 217
             +E     A E G+ I     S
Sbjct: 150 WTREKAIAFAEENGIPIEQSKKS 172


>gi|224418922|ref|ZP_03656928.1| guanosine monophosphate synthetase GuaA [Helicobacter canadensis
           MIT 98-5491]
 gi|253827873|ref|ZP_04870758.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
 gi|313142437|ref|ZP_07804630.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
 gi|253511279|gb|EES89938.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
 gi|313131468|gb|EFR49085.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
          Length = 727

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 69/202 (34%), Gaps = 41/202 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V+ A+SGGVDSSVVA LL    Y  IG  L          RKG   A + ++    
Sbjct: 426 KPHKVLCAVSGGVDSSVVATLL----YRAIGENLIPIFVDTGLLRKGEREAVEKMFR--- 478

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCV-------DCNRTVKFSD 128
             + + V     D  E F      V  P +     GET +          + N  +KF  
Sbjct: 479 --ENLRVPLITIDASEEFLGLLKGVRDPESKRKIIGETFIKVFDGEAKKHNANGEIKF-- 534

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                    A        I S    G     +                +         +L
Sbjct: 535 --------LAQGTLYPDVIESVSVKGPSKTIKSHHN------------VGGLPDWMKFEL 574

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+G+ 
Sbjct: 575 IEPLRELFKDEVRALGRELGMP 596


>gi|325474270|gb|EGC77458.1| GMP synthase [Treponema denticola F0402]
          Length = 514

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+    KD +V++A+SGGVDSSV+AALL R  G ++  +     +     K +G      
Sbjct: 212 DVQNTVKDGKVLLALSGGVDSSVLAALLNRAVGKNLTCIF---VDHGLMRKNEGD-EVEA 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              DA        ++    + E RF      V  P       GE                
Sbjct: 268 AFRDA-------PMNFIRVNAESRFLGKLKGVSDPEKKRKIIGEEF-----------IRV 309

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 ++G  D LA G      +  G  G         +    D   F           
Sbjct: 310 FEEEAEKIGTVDFLAQGTIYADIVESGTKGSAVIKSHHNVGGLPDHISFKS--------- 360

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ +R+L  E+GL 
Sbjct: 361 LIEPLKTLFKDEIRNLGTELGLP 383


>gi|187777244|ref|ZP_02993717.1| hypothetical protein CLOSPO_00796 [Clostridium sporogenes ATCC
           15579]
 gi|187774172|gb|EDU37974.1| hypothetical protein CLOSPO_00796 [Clostridium sporogenes ATCC
           15579]
          Length = 240

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS  +  LLK+      + +D+I +TL              
Sbjct: 14  DFNLIQNGDKIAVGLSGGKDSIALLHLLKKYQSFSPEKFDLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D      VC  INV  Y+  Y+   +  V               PC  C   ++ 
Sbjct: 61  TMTGADFSPLESVCSNINVPLYI--YKTPIKEIVFDVRKEK-------NPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L + +++LG + +A GH+    +  
Sbjct: 111 GALNNYSKKLGCNKIALGHHKNDAIET 137


>gi|52548840|gb|AAU82689.1| argininosuccinate synthase [uncultured archaeon GZfos19A5]
          Length = 388

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 34/191 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   LLK   GYD VI VT                   +D+ +A+ 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVT------------VNVGQPEEDIKEAKE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               ++ S+   D ++ F    I P   +    E  +      R +    ++ V R+  A
Sbjct: 50  RGAKLSNSYREIDAKDEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREEKA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A G         G+D  R   + R  DL+            ++L         + +E
Sbjct: 110 DAVAHG-----CTGKGNDQLRFDAVFRTTDLD-------VVAPMRELS--------LTRE 149

Query: 199 SVRDLAREMGL 209
             R  A E G+
Sbjct: 150 EERKYAAEHGI 160


>gi|325920175|ref|ZP_08182135.1| argininosuccinate synthase [Xanthomonas gardneri ATCC 19865]
 gi|325549355|gb|EGD20249.1| argininosuccinate synthase [Xanthomonas gardneri ATCC 19865]
          Length = 413

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M  + +   + L +  + KD  +V+A SGG+D+S     L+  GY V  V          
Sbjct: 2   MSTASSIPDSQLPIPGSKKD--IVLAFSGGLDTSFCIPYLQAQGYAVHTVF--------- 50

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +   G     +D  + +R  +    SH   D         + PF  +    +   P +  
Sbjct: 51  ADTGGVDAEERDFIE-KRAAELGAASHVTVDGGPAIWKGFVKPFVWAGEGYQGQYPLLVS 109

Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144
           +R +     L    +LG   +A G
Sbjct: 110 DRYLIVDAALKRAEELGTRSIAHG 133


>gi|313898455|ref|ZP_07831992.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
 gi|312956837|gb|EFR38468.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
          Length = 513

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 69/207 (33%), Gaps = 33/207 (15%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +    + K     +V++ +SGGVDSSVVAALL +     IG  L          RKG   
Sbjct: 204 MEIEKIRKTVGTDKVLLGLSGGVDSSVVAALLHKA----IGDQLICMFIDHGLLRKGE-- 257

Query: 69  AGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRT 123
                  A  V +T      ++    D +ERF + +                     +  
Sbjct: 258 -------AESVMETFGREMNINLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEE 310

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VK      +T       LA G        V + G +     +           +    + 
Sbjct: 311 VK-----KLTSGEDIKWLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPED 355

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL  + K+ VR L  E+GL 
Sbjct: 356 MQFKLIEPLNTLFKDEVRALGTELGLP 382


>gi|300781259|ref|ZP_07091113.1| argininosuccinate synthase [Corynebacterium genitalium ATCC 33030]
 gi|300532966|gb|EFK54027.1| argininosuccinate synthase [Corynebacterium genitalium ATCC 33030]
          Length = 406

 Score = 59.4 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L    G +V+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAEMTGGEVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVVDARDEFAEEYCLPTIKANALYMKQYPLVSAISRPLIVKHLVEAAQEHGG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 THVAHG 117


>gi|297171606|gb|ADI22602.1| ATP-utilizing enzymes of the PP-loop superfamily [uncultured
           verrucomicrobium HF0500_16O23]
          Length = 273

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 83/231 (35%), Gaps = 53/231 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS     LL +  +D +G  +       A+    +    +++ +A+++    
Sbjct: 22  LVAYSGGVDS----VLLAKVAHDELGEHM------LAAIADSASLPRRELKEAKKISAEF 71

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
                +      F N              T  P   C  C   + F+ L  +  + G  V
Sbjct: 72  GFPLEIL-RTAEFTNE--DY---------TSNPENRCYHCKYEL-FTHLEPLASERGMRV 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKE 198
           +A G          D G  R       + E                 +R PL +  + K+
Sbjct: 119 IAYGENAS------DIGDWRPGSIAAEEFE-----------------VRAPLKEAGLSKD 155

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            +R+++  +GL  A+K   Q  C   +  Y + V R   G+  + + V  +
Sbjct: 156 DIREISAHLGLPTANKP--QMPCLSSRIPYGEEVTREKVGMIEKAESVLRD 204


>gi|160945133|ref|ZP_02092359.1| hypothetical protein FAEPRAM212_02652 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442864|gb|EDP19869.1| hypothetical protein FAEPRAM212_02652 [Faecalibacterium prausnitzii
           M21/2]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 36/209 (17%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSR--KASKRKGS 66
           N   L +   + +V+ A+SGGVDSSV+AA+L +  G  +  V     +    + ++++  
Sbjct: 210 NVKALRERIGEGKVLCALSGGVDSSVLAAMLAKAIGKQLTCVF---VDHGLLRKNEKEEV 266

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C             +  +++    D  +R+ + +                 +     ++ 
Sbjct: 267 CSVFGPGN-----ANGFDINFICVDARDRYFSKLKGVTEPERKRK------IIGEEFIRV 315

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATT 181
                  +++G  D LA G      +  G  G+    +       +    D         
Sbjct: 316 --FEEEAKKIGKVDFLAQGTIYPDVVESGLGGESTVIKSHHNVGGLPDTVD--------- 364

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL ++ K+ VR   RE+GL 
Sbjct: 365 ---FKELVEPLRNLFKDEVRQAGRELGLP 390


>gi|145640142|ref|ZP_01795726.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae R3021]
 gi|145274728|gb|EDK14590.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 22.4-21]
          Length = 523

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASNTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|84623720|ref|YP_451092.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|91206840|sp|Q2P3Q9|GUAA_XANOM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206841|sp|Q5H0S2|GUAA_XANOR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|84367660|dbj|BAE68818.1| GMP synthase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 226 VILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF-AE 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----- 136
            + V     +  +R+              G   +   +  R +  +  + +  +      
Sbjct: 276 HMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVEIFDEESNTLA 323

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +           + +           +    Q     L  PL ++ 
Sbjct: 324 NAKWLAQGTIYPDVIESAGSKTGNAHVIKSHHN-------VGGLPQHMKLGLVEPLRELF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 377 KDEVRRLGVELGLP 390


>gi|281492046|ref|YP_003354026.1| GMP synthase [Lactococcus lactis subsp. lactis KF147]
 gi|161702166|gb|ABX75631.1| GMP synthase (glutamine-hydrolyzing) [Lactococcus lactis subsp.
           lactis KF147]
          Length = 513

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D +V++ +SGGVDSSVV  LL+R     IG         + +         + 
Sbjct: 211 DIREKVGDKKVLLGLSGGVDSSVVGVLLQRA----IG--------DQLTSIFVDHGFLRK 258

Query: 73  VYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              A +V +T+     ++    D ++RF + ++                V          
Sbjct: 259 GE-ADQVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVY--------V 309

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +L G D LA G      +  G D  +     +           +    +     
Sbjct: 310 FDDEANKLEGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQ 359

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR L  ++G+ 
Sbjct: 360 LIEPLNTLFKDEVRALGTQLGMP 382


>gi|162148917|ref|YP_001603378.1| GMP synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787494|emb|CAP57090.1| gmp synthase [glutamine-hydrolyzing] (glutamin amidotransferase)
           (gmp synthetase) [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 562

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+  +SGGVDSSV A L+    G  +  +            R G          A  V 
Sbjct: 266 HVICGLSGGVDSSVAAVLIHEAIGDQLTCIF-----VDPGILRAGE---------AEEVV 311

Query: 81  D----TINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  N+     D  + F      V  P       G   +   +              
Sbjct: 312 KTFRGRFNIKLVHRDASDLFLSALEGVTDPEIKRKTIGRLFVEVFEE----------QAA 361

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +  GAD LA G      +          +  +           +     +    L  PL 
Sbjct: 362 KLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMKMQLVEPLR 414

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR+L RE+G+ 
Sbjct: 415 ELFKDEVRELGRELGIP 431


>gi|150006743|ref|YP_001301486.1| argininosuccinate synthase [Parabacteroides distasonis ATCC 8503]
 gi|255016527|ref|ZP_05288653.1| argininosuccinate synthase [Bacteroides sp. 2_1_7]
 gi|262384834|ref|ZP_06077966.1| argininosuccinate synthase [Bacteroides sp. 2_1_33B]
 gi|298377705|ref|ZP_06987656.1| argininosuccinate synthase [Bacteroides sp. 3_1_19]
 gi|149935167|gb|ABR41864.1| argininosuccinate synthase [Parabacteroides distasonis ATCC 8503]
 gi|262293550|gb|EEY81486.1| argininosuccinate synthase [Bacteroides sp. 2_1_33B]
 gi|298265408|gb|EFI07070.1| argininosuccinate synthase [Bacteroides sp. 3_1_19]
          Length = 399

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VVVA SGG+D+S  V  L K  GY+V                     + + +     
Sbjct: 2   KKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNEE 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQ 135
               +    +   D  + +    +              P    +  + F  L       +
Sbjct: 51  NAYKLGATKYVTIDVTKEYYEKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYANE 109

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 110 IGADAIAHG 118


>gi|15677751|ref|NP_274914.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neisseria meningitidis MC58]
 gi|13627136|sp|Q9JXR2|GUAA_NEIMB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7227178|gb|AAF42250.1| GMP synthase [Neisseria meningitidis MC58]
 gi|325133559|gb|EGC56222.1| GMP synthase [Neisseria meningitidis M13399]
 gi|325139574|gb|EGC62114.1| GMP synthase [Neisseria meningitidis CU385]
 gi|325143631|gb|EGC65950.1| GMP synthase [Neisseria meningitidis M01-240013]
 gi|325200972|gb|ADY96427.1| GMP synthase [Neisseria meningitidis H44/76]
 gi|325206827|gb|ADZ02280.1| GMP synthase [Neisseria meningitidis M04-240196]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L  S+                  
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNESKMVMDMF------------ 267

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 + V     D E +F             AG T     +  R +  ++ + V    
Sbjct: 268 ---ARNLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAE 312

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              +       +  +Y            +   ++   +  +    +     L  PL D+ 
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|238794821|ref|ZP_04638422.1| GMP synthase [glutamine-hydrolyzing] [Yersinia intermedia ATCC
           29909]
 gi|238725834|gb|EEQ17387.1| GMP synthase [glutamine-hydrolyzing] [Yersinia intermedia ATCC
           29909]
          Length = 525

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 65/213 (30%), Gaps = 55/213 (25%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGNRLTCVFVDNGLLRLNEADQVLEMFGDK 280

Query: 68  CAGQDVYDA---RRVCDTINVSHYVFD-------YEERFRNAVIVPFASSYAAGETPLPC 117
                V+ A   R +     V             + E F           + A  T  P 
Sbjct: 281 FGLNIVHVAAEDRFLAALAGVDEPEAKRKIIGRVFVELFDEEACKQDQVKWLAQGTIYPD 340

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V  +               G   +   H+                              +
Sbjct: 341 VIES----------AASATGKAHVIKSHHN-----------------------------V 361

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++    L  PL ++ K+ VR +  E+GL 
Sbjct: 362 GGLPKEMKLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|225407981|ref|ZP_03761170.1| hypothetical protein CLOSTASPAR_05202 [Clostridium asparagiforme
           DSM 15981]
 gi|225042484|gb|EEG52730.1| hypothetical protein CLOSTASPAR_05202 [Clostridium asparagiforme
           DSM 15981]
          Length = 291

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 63/232 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +A SGGVDSS    LLK         G  V  VT         S+   SC    D+  
Sbjct: 38  ICLAFSGGVDSS---LLLKAAVQAAEHTGRQVWAVTF-------DSRLHPSC----DLEI 83

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A RV   +   H V   +E  +  +                C  C R + FS L +  R+
Sbjct: 84  AGRVAAELGGVHRVITVDELEQEEIRNNPVDR---------CYLCKRHL-FSTLKAFARE 133

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194
            G   +  G          DD    R   R +               ++L     PL D 
Sbjct: 134 RGIKRILDG-------TNEDDLHVYRPGIRAL---------------RELGIT-SPLADL 170

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKY-----FDVVKRINAGIA 240
            + K  V++LA   G+ +A +  +   C   +  Y     +D+++RI  G A
Sbjct: 171 HITKAQVKELAAWYGISVASRPSTP--CMATRIPYNTPIDYDMLRRIGEGEA 220


>gi|194366501|ref|YP_002029111.1| argininosuccinate synthase [Stenotrophomonas maltophilia R551-3]
 gi|194349305|gb|ACF52428.1| Argininosuccinate synthase [Stenotrophomonas maltophilia R551-3]
          Length = 397

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 39/209 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  VV+A SGG+D+S     L+  GY+V  V          +   G     +D  + R 
Sbjct: 2   SNKDVVLAFSGGLDTSFCVPYLQERGYNVHTVF---------ADTGGVDDEERDFIEKR- 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V SH   D         + PF  +    +   P +  +R +     L    +LG
Sbjct: 52  -AAELGVASHVTVDGGPAIWAGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAAELG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            +++A G                   C  M    DQ  F  A        +  P+ +++K
Sbjct: 111 TNIIAHG-------------------CTGM--GNDQVRFDLAVKALGDYQIIAPIREIQK 149

Query: 198 E--SVR----DLAREMGLDIADKSDSQDI 220
           E    R        E G  +  K  +  I
Sbjct: 150 EHTQTRAYEQKYLEERGFGVRAKQQAYTI 178


>gi|222823902|ref|YP_002575476.1| NH(3)-dependent NAD+ synthetase [Campylobacter lari RM2100]
 gi|222539124|gb|ACM64225.1| NH(3)-dependent NAD+ synthetase [Campylobacter lari RM2100]
          Length = 246

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 45/199 (22%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +  +D  +++ +SGG+DS++VA L K+  G  +  + +                  ++
Sbjct: 14  IKEQARDENLILGLSGGIDSALVAHLCKKAVGEKLFVLLM-----------PTKYSKKEN 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA  +CD + + H +           I     +Y        C D N  ++F +L + 
Sbjct: 63  LDDALMLCDHLQIHHKII---------YIDEVLCAYEK-----ICQDLNP-LRFGNLAAR 107

Query: 133 TRQLGADVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            R      L   +    + L VG   K   ++              + T    L     P
Sbjct: 108 VRM----SLLYDYSALHNALVVGTSNKSELML-------------GYGTIYGDLACAFNP 150

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K  V +LA+ +G+ 
Sbjct: 151 LATLYKSEVFELAKFIGVH 169


>gi|319956547|ref|YP_004167810.1| pp-loop domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319418951|gb|ADV46061.1| PP-loop domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 272

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 32/194 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           RV+V +SGG DS  +  LLK          +Q++          +   G    D   +  
Sbjct: 34  RVLVGLSGGKDSLSLVHLLKN---------MQMHAPFDFEFHACTVSYGMPGEDYSALHE 84

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+   + H V      +   +      +   G +   C   +R ++   L S   + G 
Sbjct: 85  HCEAYGIPHTV------YETDIYAISQETIREGSSF--CSYFSR-MRRGALYSFAEKGGY 135

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE-RDQSYFLFATTQQQLCDLRFPLGDMKK 197
           D +A GH+    +           + R M    +    F           +  PL + ++
Sbjct: 136 DKIALGHHFDDAVESFFMNMFYNGVMRSMAPIYKADRGF----------HVVRPLIEARE 185

Query: 198 ESVRDLAREMGLDI 211
             +R  A E G   
Sbjct: 186 AQLRAFAEENGFAT 199


>gi|167761107|ref|ZP_02433234.1| hypothetical protein CLOSCI_03505 [Clostridium scindens ATCC 35704]
 gi|167661341|gb|EDS05471.1| hypothetical protein CLOSCI_03505 [Clostridium scindens ATCC 35704]
          Length = 442

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 46/201 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +           
Sbjct: 147 DRKVLLALSGGVDSSVVAALLLKAIGQQLVCVHVNHGLMRKNESESVVEVFQ-------- 198

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  + ++ +    D  ERF      V  P              +     ++     
Sbjct: 199 -------NQLHANLIYVDATERFLGKLEGVKDP--EEKRK-------IIGGEFIRV--FE 240

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              R+L G D L  G        + + G +   M +           +    +    +L 
Sbjct: 241 EEARKLDGIDFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLQFELV 290

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR    E+GL 
Sbjct: 291 EPLKQLFKDEVRACGIELGLP 311


>gi|260427551|ref|ZP_05781530.1| GMP synthase [Citreicella sp. SE45]
 gi|260422043|gb|EEX15294.1| GMP synthase [Citreicella sp. SE45]
          Length = 523

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV   LL    G  +  V                      + +A +
Sbjct: 225 DKKVICALSGGVDSSVTGILLHEAIGDQLTCVF--------------VDHGLLRLNEAEQ 270

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D  N++    D  + F  A         +  ET    +     +          
Sbjct: 271 VVSMFRDNYNLNLIHADESDLFLGA-----LEGVSDPETKRKTIG---KLFIDVFQKYAD 322

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           Q+ GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 323 QIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 375

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 376 ELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 414


>gi|256842259|ref|ZP_05547763.1| argininosuccinate synthase [Parabacteroides sp. D13]
 gi|301309009|ref|ZP_07214954.1| argininosuccinate synthase [Bacteroides sp. 20_3]
 gi|256736143|gb|EEU49473.1| argininosuccinate synthase [Parabacteroides sp. D13]
 gi|300833035|gb|EFK63660.1| argininosuccinate synthase [Bacteroides sp. 20_3]
          Length = 399

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VVVA SGG+D+S  V  L K  GY+V                     + + +     
Sbjct: 2   KKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNEE 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQ 135
               +    +   D  + +    +              P    +  + F  L       +
Sbjct: 51  NAYKLGATKYVTIDVTKEYYEKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYANE 109

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 110 IGADAIAHG 118


>gi|253681114|ref|ZP_04861917.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str.
           1873]
 gi|253562963|gb|EES92409.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str.
           1873]
          Length = 239

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   KR   + +++I +TL              
Sbjct: 14  DFDLIQSGDKIAVGLSGGKDSITLLYLLNAYKRFSPEPFELIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             AG D  +  R+C  +NV +Y+  ++ R +  V      S        PC  C   ++ 
Sbjct: 61  PGAGADFTEMIRICKELNVPYYL--FKTRIKEIVFDIRKES-------NPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L    ++LG + +A GH+    +  
Sbjct: 111 GSLNDHAKKLGCNKIALGHHKNDAIET 137


>gi|87118398|ref|ZP_01074297.1| argininosuccinate synthase [Marinomonas sp. MED121]
 gi|86166032|gb|EAQ67298.1| argininosuccinate synthase [Marinomonas sp. MED121]
          Length = 410

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVKWLQEE-YQCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGIKEIYIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|326796169|ref|YP_004313989.1| Argininosuccinate synthase [Marinomonas mediterranea MMB-1]
 gi|326546933|gb|ADZ92153.1| Argininosuccinate synthase [Marinomonas mediterranea MMB-1]
          Length = 411

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVKWLQEE-YQCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVNEIYIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 107 ANETGADAIAHG 118


>gi|323705926|ref|ZP_08117497.1| NAD+ synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534724|gb|EGB24504.1| NAD+ synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 545

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 13/82 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VV +SGG+DS+V  AL  +  G + V+GV++                +     DAR 
Sbjct: 290 KKAVVGLSGGIDSAVTCALAVKALGRENVLGVSM-----------PSRYSSEGSKDDARD 338

Query: 79  VCDTINVSHYVFDYEERFRNAV 100
           +   +N+ + V   E+ F++ +
Sbjct: 339 LAQNLNIEYRVIPIEDVFKSYI 360


>gi|294495881|ref|YP_003542374.1| GMP synthase (glutamine-hydrolyzing) [Methanohalophilus mahii DSM
           5219]
 gi|292666880|gb|ADE36729.1| GMP synthase (glutamine-hydrolyzing) [Methanohalophilus mahii DSM
           5219]
          Length = 304

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 48/225 (21%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           MV +E     +++  K     + ++A+SGGVDSSV A L  R  G ++I + +       
Sbjct: 1   MVKTEKFIPKAIEKIKAKAQGKTIIALSGGVDSSVCAVLAHRAIGDNLIPIYI-----DT 55

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI---VPFASSYAAGETPLP 116
              RKG     +++          +++  + D ++RF + ++    P     A GET   
Sbjct: 56  GLMRKGETERIKEI--------FGDMNLQIIDAKDRFLDNLVGIKDPEEKRKAVGETF-- 105

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
                              + A+ L  G     ++    DG  +         E      
Sbjct: 106 ---------IRVFEEEAIYVEAECLIQGTIYPDKIES--DGGIKSHHNVGGLPE------ 148

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
                  +   +  P+ D+ K+ VR++A  + L        ++IC
Sbjct: 149 -----HIKFKHIIEPIDDLYKDEVREVAHALDLP-------EEIC 181


>gi|225405534|ref|ZP_03760723.1| hypothetical protein CLOSTASPAR_04754 [Clostridium asparagiforme
           DSM 15981]
 gi|225042946|gb|EEG53192.1| hypothetical protein CLOSTASPAR_04754 [Clostridium asparagiforme
           DSM 15981]
          Length = 437

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 46/201 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +           
Sbjct: 142 DRKVLLALSGGVDSSVVAALLLKAIGNQLVCVHVNHGLMRKNESESVVEVFK-------- 193

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  + ++ +    D  ERF      V  P              +     ++     
Sbjct: 194 -------NQLHANLIYVDAVERFLGKLENVSDP---EQKRK------IIGGEFIRV--FE 235

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              R+L G D L  G        + + G +   M +           +    +    +L 
Sbjct: 236 EEARKLDGIDFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLKFELV 285

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR    E+GL 
Sbjct: 286 EPLKQLFKDEVRACGVELGLP 306


>gi|78485259|ref|YP_391184.1| argininosuccinate synthase [Thiomicrospira crunogena XCL-2]
 gi|119361340|sp|Q31H63|ASSY_THICR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|78363545|gb|ABB41510.1| argininosuccinate synthase [Thiomicrospira crunogena XCL-2]
          Length = 402

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++A  L+ + Y    VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSIIAKWLQEE-YQCEVVTF-----------TADIGQGEEVAPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  EAMGIKEIYIEDLREEFARDFVFPMMRANAIYEGEYRLGTSIARPLISKR------LVEI 106

Query: 133 TRQLGADVLATG 144
            ++ GAD ++ G
Sbjct: 107 AQETGADAISHG 118


>gi|317127134|ref|YP_004093416.1| GMP synthase, large subunit [Bacillus cellulosilyticus DSM 2522]
 gi|315472082|gb|ADU28685.1| GMP synthase, large subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 512

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 74/210 (35%), Gaps = 45/210 (21%)

Query: 12  LDLDKNPK---DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +++DK  +   + +V+ A+SGGVDSSVVAAL+ +     IG  L          RKG   
Sbjct: 206 MEMDKVRELVGNKKVLCALSGGVDSSVVAALIHKA----IGDQLICMFIDHGLLRKGE-- 259

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCN 121
                  A  V  T         + E F   VI       F S     + P     +  N
Sbjct: 260 -------ADSVMKT---------FSEGFDMNVIKIDAQERFLSKLEGVKDPEQKRKIIGN 303

Query: 122 RTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
             +          +L   D LA G      +  G D  +     +           +   
Sbjct: 304 EFIYV--FEEEAGKLTDVDFLAQGTLYTDIIESGTDTAQT---IKSHHN-------VGGL 351

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +     L  PL  + K+ VR++  E+GL 
Sbjct: 352 PEDMHFKLIEPLNTLFKDEVREVGTELGLP 381


>gi|124021760|ref|YP_001016067.1| GMP synthase [Prochlorococcus marinus str. MIT 9303]
 gi|226739662|sp|A2C5P2|GUAA_PROM3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123962046|gb|ABM76802.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 528

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 DKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               N++    +  +RF    N ++ P              +     ++       + +L
Sbjct: 276 -RKFNINVEYINARQRFISKLNGIVDP--EEKRK-------IIGTEFIRV--FEEESNRL 323

Query: 137 G-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  D LA G  Y       G +   +      + ++   +  +    +     L  PL  
Sbjct: 324 GPFDYLAQGTLYPDVIESAGTNIDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLRR 381

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 382 LFKDEVRKVGRSLGLP 397


>gi|254459568|ref|ZP_05072984.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           HTCC2083]
 gi|206676157|gb|EDZ40644.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 524

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 76/239 (31%), Gaps = 62/239 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+  +SGGVDSSV A L+       IG              + +C         +  
Sbjct: 226 DKKVICGLSGGVDSSVAAVLIHEA----IG-------------DQLTCVFVDHGLLRKGE 268

Query: 80  CDTINVSHYVFD-YEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D       V   + + +    I       F       + P       R +     + V 
Sbjct: 269 AD------EVVSMFRDNYNMHFIHAEEQELFLGELDGQDDPE----TKRKIIGRLFIDVF 318

Query: 134 RQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ++      GA+ LA G      +          +  +           +    ++    L
Sbjct: 319 QKYAGQIDGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKL 371

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
             PL ++ K+ VR L RE+GL  +         F+ +  +         G+A+   G+I
Sbjct: 372 VEPLRELFKDEVRALGRELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 415


>gi|78211601|ref|YP_380380.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. CC9605]
 gi|123579036|sp|Q3ANK7|GUAA_SYNSC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78196060|gb|ABB33825.1| GMP synthase [Synechococcus sp. CC9605]
          Length = 528

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 DKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               N+     +  +RF              G T     +  R +            +++
Sbjct: 276 -RKFNIHVEYINARQRFIGK---------LEGIT---DPEEKRKIIGTEFIRVFEEESKR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + R +GL 
Sbjct: 381 KLFKDEVRKVGRSLGLP 397


>gi|78224058|ref|YP_385805.1| NAD synthetase [Geobacter metallireducens GS-15]
 gi|78195313|gb|ABB33080.1| NH(3)-dependent NAD(+) synthetase [Geobacter metallireducens GS-15]
          Length = 271

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 44/191 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA L     G + I    +                  +    AR  
Sbjct: 28  KAVLGLSGGIDSALVAYLAAEALGPENIHACIM-----------PYRTSNPESEAHARLA 76

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + + + V D         I P   +Y +     P  D  R         + R+    
Sbjct: 77  AEHLGIHYQVID---------ITPMIDAYFSR---FPDADSMRRGN-----KMARERM-- 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +   H       V     +  ++              + T    +     P+GD+ K  
Sbjct: 118 TILYDHSAALPALVLGTSNKTELLL------------GYGTLYGDMASALNPIGDIYKTQ 165

Query: 200 VRDLAREMGLD 210
           V  L+ EMG+ 
Sbjct: 166 VWQLSEEMGVP 176


>gi|313903525|ref|ZP_07836915.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466078|gb|EFR61602.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 524

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +  +  R + A+SGGVDS+V A L+ R  G  +  V                     +
Sbjct: 220 LRRQLEGARALCALSGGVDSTVAAVLVHRAIGPRLACVF-----------VDTGLLRAGE 268

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           V + +     + +   V D  +RF    + +  P A   A GET                
Sbjct: 269 VEEVQESLVGLGIELRVVDARDRFLAALDGIADPEAKRKAVGETF-----------IRVF 317

Query: 130 LSVTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               RQL  ++      ++   Y    + G       +           +          
Sbjct: 318 EEEARQLAEELGPIPFLVQGTTYPDVIESGGGAAATIKSHHN-------VGGLPPDLAFR 370

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR++ R +GL 
Sbjct: 371 LVEPLRYLFKDEVREVGRRLGLP 393


>gi|256026660|ref|ZP_05440494.1| GMP synthase [Fusobacterium sp. D11]
 gi|289764658|ref|ZP_06524036.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D11]
 gi|289716213|gb|EFD80225.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D11]
          Length = 408

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 111 NKKVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKDEAKQVME 159

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF             AG T     +  R +   + + V     
Sbjct: 160 VYAKNFDMNIKCINAEERFLTK---------LAGIT---DPETKRKIIGKEFVEVFNEEA 207

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +          +D          + L   
Sbjct: 208 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLP-KD-------LKFELLE-- 257

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 258 --PLRELFKDEVRKVGRELGIP 277


>gi|172056478|ref|YP_001812938.1| GMP synthase, large subunit [Exiguobacterium sibiricum 255-15]
 gi|254800098|sp|B1YIZ1|GUAA_EXIS2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171988999|gb|ACB59921.1| GMP synthase, large subunit [Exiguobacterium sibiricum 255-15]
          Length = 514

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 67/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVAAL+       IG  L          RKG          A  V
Sbjct: 219 DKKVLCALSGGVDSSVVAALIHAA----IGDQLTCMFVDHGLLRKGE---------AESV 265

Query: 80  ----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                D  +++    D ++RF N +                 V                +
Sbjct: 266 MKTFADHFHMNVIKIDAQDRFLNKLKGISDPEQKRKIIGNEFVY--------VFDEEASK 317

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L   D LA G      +  G D  +     +           +    +     L  P+  
Sbjct: 318 LTDMDFLAQGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMQFKLIEPINT 367

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L +E+GL 
Sbjct: 368 LFKDEVRELGKELGLS 383


>gi|322805502|emb|CBZ03066.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           botulinum H04402 065]
          Length = 266

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+    LL +   + +G      ++  +           ++ +A+ + + 
Sbjct: 18  VAVAFSGGVDST----LLLKAAKEALG------DNAISITVVSPYIPKWEIKEAKELAND 67

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 68  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKEKGVK 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 113 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 151

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++E+GL+  +K      C + +  Y   +K 
Sbjct: 152 IRTLSKELGLETWNKP--AYACLLSRIPYNQEIKE 184


>gi|283782153|ref|YP_003372908.1| ExsB family protein [Pirellula staleyi DSM 6068]
 gi|283440606|gb|ADB19048.1| ExsB family protein [Pirellula staleyi DSM 6068]
          Length = 291

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 65/195 (33%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+VVA              L L ++  A        A  ++  A  V   
Sbjct: 37  VAVAFSGGVDSAVVAK----------AAQLSLGDAAVAVTGVSPSLASGELEIAIEVASA 86

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I + H +   +E      +               C  C   + ++ L S    L  + + 
Sbjct: 87  IGIRHEIMRTDELGSEGYVRNAGDR---------CYFCKTEL-YTQLESRLAALDVEAIV 136

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G        V D G  R  M    +                   +R PL +  + K  V
Sbjct: 137 NG------ANVDDLGDHRPGMKAASEH-----------------RVRSPLAEAGLTKAEV 173

Query: 201 RDLAREMGLDIADKS 215
           R+LAR   L ++DK 
Sbjct: 174 RELARYWNLSVSDKP 188


>gi|261393251|emb|CAX50874.1| GMP synthase [glutamine-hydrolyzing] (glutamine amidotransferase;
           GMP synthetase) [Neisseria meningitidis 8013]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|84624178|ref|YP_451550.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576219|ref|YP_001913148.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368118|dbj|BAE69276.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520671|gb|ACD58616.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 413

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 12/141 (8%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +    N       P    +V+A SGG+D+S     L+  GY V  V              
Sbjct: 4   QTASTNPESPIPTPGTKDIVLAFSGGLDTSFCIPYLQERGYAVHTVF-----------AD 52

Query: 65  GSCCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                 ++     +    +   SH   D         + PF  +    +   P +  +R 
Sbjct: 53  TGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRY 112

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +     L    +LG  ++A G
Sbjct: 113 LIVDAALKRAEELGTRIIAHG 133


>gi|11498605|ref|NP_069833.1| NAD synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|6093466|sp|O29262|NADE_ARCFU RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|2649596|gb|AAB90242.1| NH(3)-dependent NAD+ synthetase (nadE) [Archaeoglobus fulgidus DSM
           4304]
          Length = 247

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS+ VA L  R  G + V  + +           +      QDV DA  V 
Sbjct: 26  VVLGLSGGVDSATVAYLCVRALGSERVFALIM----------PETGVTPEQDVEDAINVA 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++ + + + +      N ++  F      G         N   +   +L+       + 
Sbjct: 76  ESLGMEYKLIEI-----NDIVRVFKEKAGEGSKIAE---ANLKPRIRMVLNYYHANSMNR 127

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G   +S L VG   K         D   D                  P+GD+ K  V
Sbjct: 128 LVAGTGNKSELMVGYFTKY-------GDGGVD----------------FLPIGDLYKTEV 164

Query: 201 RDLAREMGLD 210
             LA  +G+ 
Sbjct: 165 FQLAAYLGVP 174


>gi|220929615|ref|YP_002506524.1| GMP synthase [Clostridium cellulolyticum H10]
 gi|259647674|sp|B8I4P0|GUAA_CLOCE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|219999943|gb|ACL76544.1| GMP synthase, large subunit [Clostridium cellulolyticum H10]
          Length = 511

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 31/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  +     +     K +G             
Sbjct: 215 DKKVLCALSGGVDSSVAAVLIHKAIGKQLTCIF---VDHGLLRKYEGDQVEQIFR----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + E+RF   +                 +     ++        +++G 
Sbjct: 267 --KQYDINLIRVNCEDRFLQRLKGVSDPETKRK------IIGEEFIRV--FEDEAKKIGK 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G        V + G     + +           +    +     ++  PL  + 
Sbjct: 317 VDFLVQG---TIYPDVIESGIGDAAVIKSHHN-------VGGLPEHVDFKEIIEPLRSLF 366

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+G+ 
Sbjct: 367 KDEVRRAGEELGIP 380


>gi|87301596|ref|ZP_01084436.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 5701]
 gi|87283813|gb|EAQ75767.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 5701]
          Length = 532

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG      + +DA+  
Sbjct: 228 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPEFLTEFFDAQ-- 281

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++     +  +RF              G T     +  R +            +++
Sbjct: 282 ---FHIRVEYINARDRFLAK---------LDGVT---DPEQKRKIIGAEFIRVFEEESKR 326

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  D LA G      +         +   R     +            Q   L  PL  
Sbjct: 327 LGPFDYLAQGTLYPDVIESAGTNLDPKTGERVAVKIKSHHNVGGLPKDLQF-KLVEPLRR 385

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 386 LFKDEVRKVGRSLGLP 401


>gi|325201444|gb|ADY96898.1| GMP synthase [Neisseria meningitidis M01-240149]
 gi|325207425|gb|ADZ02877.1| GMP synthase [Neisseria meningitidis NZ-05/33]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|309379529|emb|CBX21895.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|317154147|ref|YP_004122195.1| PP-loop domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944398|gb|ADU63449.1| PP-loop domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 309

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + R++VA+SGG DS  +   L   GYDV G+ + L     +                  
Sbjct: 46  HEERILVALSGGKDSLSLMLELAAQGYDVTGLHIDLGIPGSS---------PSARVKVEA 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C +  +   V + E+     + +P   +Y       P       +K      +  + G 
Sbjct: 97  FCSSHGLKLEVLEMEKE---GLPIPDIKAYVN----RPVCSVCGRIKRHHFNRIAMEGGY 149

Query: 139 DVLATGHYI 147
           D LATGH +
Sbjct: 150 DALATGHNL 158


>gi|240079877|ref|ZP_04724420.1| GMP synthase [Neisseria gonorrhoeae FA19]
 gi|240122671|ref|ZP_04735627.1| GMP synthase [Neisseria gonorrhoeae PID332]
 gi|268596020|ref|ZP_06130187.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae FA19]
 gi|268681269|ref|ZP_06148131.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID332]
 gi|293397813|ref|ZP_06642019.1| GMP synthase [Neisseria gonorrhoeae F62]
 gi|268549808|gb|EEZ44827.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae FA19]
 gi|268621553|gb|EEZ53953.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID332]
 gi|291611759|gb|EFF40828.1| GMP synthase [Neisseria gonorrhoeae F62]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|239998115|ref|ZP_04718039.1| GMP synthase [Neisseria gonorrhoeae 35/02]
 gi|268593966|ref|ZP_06128133.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 35/02]
 gi|268547355|gb|EEZ42773.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 35/02]
 gi|317165558|gb|ADV09099.1| GMP synthase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|269214512|ref|ZP_05986724.2| GMP synthase [Neisseria lactamica ATCC 23970]
 gi|269209679|gb|EEZ76134.1| GMP synthase [Neisseria lactamica ATCC 23970]
          Length = 522

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 221 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 270

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 271 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 318

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 319 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 371

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 372 KDEVRELGVALGLP 385


>gi|157737493|ref|YP_001490176.1| NH(3)-dependent NAD+ synthetase [Arcobacter butzleri RM4018]
 gi|315637219|ref|ZP_07892439.1| NAD+ synthetase [Arcobacter butzleri JV22]
 gi|157699347|gb|ABV67507.1| NH(3)-dependent NAD+ synthetase [Arcobacter butzleri RM4018]
 gi|315478491|gb|EFU69204.1| NAD+ synthetase [Arcobacter butzleri JV22]
          Length = 254

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 42/189 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V +SGG+DS+VVA L K           +  N      +  S      +  A  VC+
Sbjct: 26  KVTVGLSGGLDSAVVAILCKEA-------FGKNLNCVLMPSQFSS---QSSIEHAIEVCE 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++ + +           I P  S++            N  ++  +  +  R     VL
Sbjct: 76  KFDIRYDIVS---------IEPMVSAFLK----NMD---NDKLRIGNFSARMRM---SVL 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
               +    L VG   K   ++              + T    +     P+G++ K    
Sbjct: 117 YDISFKEKSLVVGTSNKSELLL-------------GYGTIFGDIACAINPIGEIYKSDEF 163

Query: 202 DLAREMGLD 210
           + A+ +G+ 
Sbjct: 164 EFAKLLGVP 172


>gi|4321715|gb|AAD15805.1| GMP synthase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 513

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D +V++ +SGGVDSSVV  LL+R     IG         + +         + 
Sbjct: 211 DIREKVGDKKVLLGLSGGVDSSVVGVLLQRA----IG--------DQLTSIFVDHGFLRK 258

Query: 73  VYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              A +V +T+     ++    D ++RF + ++                V          
Sbjct: 259 GE-ADQVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETQRKIIGNEFVY--------V 309

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +L G D LA G      +  G D  +     +           +    +     
Sbjct: 310 FDDEANKLEGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQ 359

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR L  ++G+ 
Sbjct: 360 LIEPLNTLFKDEVRALGTQLGMP 382


>gi|51597148|ref|YP_071339.1| GMP synthase [Yersinia pseudotuberculosis IP 32953]
 gi|153949679|ref|YP_001400177.1| GMP synthase [Yersinia pseudotuberculosis IP 31758]
 gi|170023549|ref|YP_001720054.1| GMP synthase [Yersinia pseudotuberculosis YPIII]
 gi|186896242|ref|YP_001873354.1| GMP synthase [Yersinia pseudotuberculosis PB1/+]
 gi|81638867|sp|Q668A8|GUAA_YERPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739771|sp|A7FFZ9|GUAA_YERP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739772|sp|B2K9P0|GUAA_YERPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739775|sp|B1JSB0|GUAA_YERPY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|51590430|emb|CAH22070.1| putative GMP synthase [Yersinia pseudotuberculosis IP 32953]
 gi|152961174|gb|ABS48635.1| GMP synthase [Yersinia pseudotuberculosis IP 31758]
 gi|169750083|gb|ACA67601.1| GMP synthase, large subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699268|gb|ACC89897.1| GMP synthase, large subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 525

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++ +SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FS 127
           + +A +V +         +              F S+ A  + P       R +    F 
Sbjct: 267 LNEADQVLEMFGDKFGLNIVHVAAE------DRFLSALAGVDEPE----AKRKIIGRVFV 316

Query: 128 DLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L      +Q     LA G      +        +  + +           +    ++  
Sbjct: 317 ELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMK 369

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 370 LGLVEPLKELFKDEVRKIGLELGLP 394


>gi|194100128|ref|YP_002003268.1| GMP synthase [Neisseria gonorrhoeae NCCP11945]
 gi|240013295|ref|ZP_04720208.1| GMP synthase [Neisseria gonorrhoeae DGI18]
 gi|240015741|ref|ZP_04722281.1| GMP synthase [Neisseria gonorrhoeae FA6140]
 gi|240120367|ref|ZP_04733329.1| GMP synthase [Neisseria gonorrhoeae PID24-1]
 gi|240127374|ref|ZP_04740035.1| GMP synthase [Neisseria gonorrhoeae SK-93-1035]
 gi|268685746|ref|ZP_06152608.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|226739646|sp|B4RJH7|GUAA_NEIG2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|193935418|gb|ACF31242.1| GMP synthase [Neisseria gonorrhoeae NCCP11945]
 gi|268626030|gb|EEZ58430.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|18977994|ref|NP_579351.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18893773|gb|AAL81746.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 261

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 21/133 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+V  SGG+DSSV   +LK+ G+ V  +T                   + +    + 
Sbjct: 20  NKRVLVLYSGGIDSSVTLYVLKKAGFKVSALTF-----------FHKWSWPEVLRWGMKF 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             ++NV HY+ D         I       A G     C+ C + +  +            
Sbjct: 69  TKSLNVEHYLID---------ITDALLRRAVGRKGPICIHCKKVMLENAKW-FALNNNFS 118

Query: 140 VLATGHYIRSRLY 152
            LA G     ++ 
Sbjct: 119 YLAKGDNANDKII 131


>gi|301758858|ref|XP_002915251.1| PREDICTED: argininosuccinate synthase-like [Ailuropoda melanoleuca]
          Length = 412

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L                  +D  +AR+    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANI------------GQKEDFEEARKKAMK 53

Query: 83  INV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           +     ++ D  + F    I P           Y  G +   PC+   +       + + 
Sbjct: 54  LGAKKVFIEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIA 106

Query: 134 RQLGADVLATG 144
           ++ GA  ++ G
Sbjct: 107 QREGAKYVSHG 117


>gi|229820853|ref|YP_002882379.1| argininosuccinate synthase [Beutenbergia cavernae DSM 12333]
 gi|229566766|gb|ACQ80617.1| argininosuccinate synthase [Beutenbergia cavernae DSM 12333]
          Length = 413

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +    RVV+A SGG+D+SV    +    G +VI V                   G+D+  
Sbjct: 3   STSSKRVVLAYSGGLDTSVAIGWIGEATGAEVIAV------------AVDVGQGGEDLDV 50

Query: 76  ARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
            R+       V  YV D  + F     +P  ++ A      P V   +R V    L+   
Sbjct: 51  IRQRALDCGAVEAYVADARDEFATEYCMPALAANAMYLDRYPLVSALSRPVIVKHLVRAA 110

Query: 134 RQLGADVLATG 144
           RQ GAD +A G
Sbjct: 111 RQFGADTVAHG 121


>gi|240112085|ref|ZP_04726575.1| GMP synthase [Neisseria gonorrhoeae MS11]
 gi|240124859|ref|ZP_04737745.1| GMP synthase [Neisseria gonorrhoeae SK-92-679]
 gi|254492895|ref|ZP_05106066.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 1291]
 gi|268598143|ref|ZP_06132310.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae MS11]
 gi|268683440|ref|ZP_06150302.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226511935|gb|EEH61280.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 1291]
 gi|268582274|gb|EEZ46950.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae MS11]
 gi|268623724|gb|EEZ56124.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|269213735|ref|ZP_05982744.2| GMP synthase [Neisseria cinerea ATCC 14685]
 gi|269145638|gb|EEZ72056.1| GMP synthase [Neisseria cinerea ATCC 14685]
          Length = 522

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 221 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 270

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D EE+F   +              +   +  R +  ++ + V    +    
Sbjct: 271 NLGVKVIHVDAEEQFMAKLAS------------VTDPEKKRKIIGAEFIEVFDAEEKKLT 318

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 319 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 371

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 372 KDEVRELGVALGLP 385


>gi|75907277|ref|YP_321573.1| GMP synthase [Anabaena variabilis ATCC 29413]
 gi|91206794|sp|Q3MEA8|GUAA_ANAVT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|75701002|gb|ABA20678.1| GMP synthase (glutamine-hydrolyzing) [Anabaena variabilis ATCC
           29413]
          Length = 540

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 31/198 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGSCCAGQDV 73
           D RV++A+SGGVDSS +A L+ +  G  +  V      ++ Y   +  K           
Sbjct: 236 DKRVLLALSGGVDSSTLAFLMHKAIGDQLTCVFIDQGFMRKYEPERLVKLFQ-------- 287

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +  ++     +  +RF + ++                   +  ++       +
Sbjct: 288 -------EQFHIPVEYVNARDRFLDIMVGVTDPEEKRRR------IGHEFIQV--FEETS 332

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R LG  D LA G      +   D     +   R     +   + +    +     L  PL
Sbjct: 333 RNLGPFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSH-HNVGGLPKDLRFKLVEPL 391

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR + R +GL 
Sbjct: 392 RKLFKDEVRKVGRSVGLP 409


>gi|238788161|ref|ZP_04631956.1| GMP synthase [glutamine-hydrolyzing] [Yersinia frederiksenii ATCC
           33641]
 gi|238723748|gb|EEQ15393.1| GMP synthase [glutamine-hydrolyzing] [Yersinia frederiksenii ATCC
           33641]
          Length = 528

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   D  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 224 LREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFGDK 283

Query: 68  CAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                V+ A   R +     V       E   +  +I                       
Sbjct: 284 FGLNIVHVAAEDRFLAALAGVD------EPEAKRKIIGRVFVELFDE------------- 324

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                    +Q     LA G      +        +  + +           +    ++ 
Sbjct: 325 ------EACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEM 371

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 372 KLGLVEPLKELFKDEVRKIGLELGLP 397


>gi|213692741|ref|YP_002323327.1| Argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254807508|sp|B7GTP0|ASSY_BIFLI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|213524202|gb|ACJ52949.1| Argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458899|dbj|BAJ69520.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 412

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R+V+A SGG+D+SV  + LK   G DV+ V+L                 G+ +   ++
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSL------------DVGQGGESLETIKQ 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 52  RALACGAVESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|118586895|ref|ZP_01544328.1| GMP synthase [Oenococcus oeni ATCC BAA-1163]
 gi|118432622|gb|EAV39355.1| GMP synthase [Oenococcus oeni ATCC BAA-1163]
          Length = 531

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSVVA LL +  G  +  +     +     K +              
Sbjct: 236 NKKVLLGLSGGVDSSVVAVLLHKAIGRQLTCIF---VDHGLLRKNEAKLVMES------- 285

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
           +     ++    D ++RF +          +  E         R +   + +       +
Sbjct: 286 LAGKFGLNIIKVDAQKRFLDK-----LEGISEPEQK-------RKIIGKEFIETFNDEAK 333

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G      +  G D  +     +           +    ++    L  PL 
Sbjct: 334 KLDGIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPKEMHFKLIEPLR 383

Query: 194 DMKKESVRDLAREMGLDIA 212
            + K+  R L  EM +  A
Sbjct: 384 TLFKDEARKLGEEMQMPHA 402


>gi|313669142|ref|YP_004049426.1| GMP synthetase [Neisseria lactamica ST-640]
 gi|313006604|emb|CBN88069.1| putative GMP synthetase [Neisseria lactamica 020-06]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|218264284|ref|ZP_03478141.1| hypothetical protein PRABACTJOHN_03832 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222121|gb|EEC94771.1| hypothetical protein PRABACTJOHN_03832 [Parabacteroides johnsonii
           DSM 18315]
          Length = 399

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VVVA SGG+D+S  V  L K  GY+V                     + + +     
Sbjct: 2   KKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNEE 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQ 135
               +    +   D  + +    +              P    +  + F  L       +
Sbjct: 51  NAYKLGATKYVTIDVTKEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYANE 109

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 110 IGADAIAHG 118


>gi|139438181|ref|ZP_01771734.1| Hypothetical protein COLAER_00722 [Collinsella aerofaciens ATCC
           25986]
 gi|133776378|gb|EBA40198.1| Hypothetical protein COLAER_00722 [Collinsella aerofaciens ATCC
           25986]
          Length = 532

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 34/206 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  +   D RV++A+SGGVDSSVVAAL    G   +G  +          RKG     ++
Sbjct: 211 EFREKVGDDRVILALSGGVDSSVVAAL----GARAVGKQMTCVFINHGLLRKGEPEQVEE 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVK----FS 127
           V+         +V       E+R+         +   AG T P       R +     + 
Sbjct: 267 VF-----TKQFDVDFIHVHAEDRY---------AELLAGVTEPEE----KRRIIGTQFWK 308

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS---YFLFATTQQQ 184
           +  +V +QL  D     +  +  +Y        R         +       F        
Sbjct: 309 EFFAVAQQLETDGKPVKYLAQGTIYPDIIESGARKTGGKTATIKSHHNLIPFPEGVHFD- 367

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL    K+ VR L   +GL 
Sbjct: 368 ---LIEPLDHFFKDEVRALGLALGLP 390


>gi|255528397|ref|ZP_05395198.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296186775|ref|ZP_06855177.1| hypothetical protein CLCAR_2240 [Clostridium carboxidivorans P7]
 gi|255507916|gb|EET84355.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296048812|gb|EFG88244.1| hypothetical protein CLCAR_2240 [Clostridium carboxidivorans P7]
          Length = 267

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 59/220 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +VV+A SGGVDS+    LLK      G +V  VT+                   ++ +A+
Sbjct: 19  KVVLAFSGGVDST---FLLKASKEALGDNVKAVTI-----------LSPYIPKWEIEEAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            +   + V H + +           P   S        P   C  C   V FS +L+  +
Sbjct: 65  ELVKELGVKHEIIE----------APIIDSIRY----NPEDRCYLCKTAV-FSMILNAAK 109

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G D +  G          DD    R   R +     +S  L                 
Sbjct: 110 EQGYDCVIDG-------TNFDDIGDYRPGLRALKELEIKSPLLE--------------CK 148

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           + K  +R  ++E+ L+  DK      C + +  Y + +K 
Sbjct: 149 LTKAEIRAFSKELKLNTWDKPPY--ACLLTRIPYGNELKE 186


>gi|23465627|ref|NP_696230.1| argininosuccinate synthase [Bifidobacterium longum NCC2705]
 gi|30172866|sp|Q8G5F2|ASSY_BIFLO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|23326299|gb|AAN24866.1| argininosuccinate synthase [Bifidobacterium longum NCC2705]
          Length = 412

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R+V+A SGG+D+SV  + LK   G DV+ V+L                 G+ +   ++
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSL------------DVGQGGESLETIKQ 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 52  RALACGAVESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|110632855|ref|YP_673063.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mesorhizobium sp. BNC1]
 gi|110283839|gb|ABG61898.1| GMP synthase (glutamine-hydrolyzing) [Chelativorans sp. BNC1]
          Length = 519

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSV A L     G  +  +   L +     K +    A + V   R   
Sbjct: 223 KVICALSGGVDSSVAALLTHEAVGEQLTCI---LVDHGLMRKNE----AAEVVSMFR--- 272

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLSVTRQL-GA 138
           +  NV   + D  +RF +A           GET P         +         ++L GA
Sbjct: 273 EHYNVPLVLVDASDRFLSA---------LEGETDPEKKRKTIGRLFIEVFEDEAKKLGGA 323

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +          +  +           +    ++    L  PL ++ K+
Sbjct: 324 DFLVQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELFKD 376

Query: 199 SVRDLAREMGLD 210
            VR L R++GL 
Sbjct: 377 EVRVLGRKLGLP 388


>gi|227546226|ref|ZP_03976275.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|296453804|ref|YP_003660947.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|322690756|ref|YP_004220326.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|227213207|gb|EEI81079.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|296183235|gb|ADH00117.1| Argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|320455612|dbj|BAJ66234.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 412

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R+V+A SGG+D+SV  + LK   G DV+ V+L                 G+ +   ++
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSL------------DVGQGGESLETIKQ 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 52  RALACGAVESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|126649625|ref|ZP_01721866.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. B14905]
 gi|126593950|gb|EAZ87873.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. B14905]
          Length = 517

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +          D  
Sbjct: 222 DKKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHNLNRKGEVEQVMKTFTED-- 275

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                 +++    D  +RF + +                 +  N  +          +L 
Sbjct: 276 -----FDMNLIKIDARKRFMDKLAGVSDPEKKRK------IIGNEFIYV--FDEEASKLE 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G        + + G       +           +    +     L  PL  + 
Sbjct: 323 GMDFLAQG---TLYTDIIESGTSTAQTIKSHHN-------VGGLPEDMQFKLIEPLKTLF 372

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GLD
Sbjct: 373 KDEVRALGLELGLD 386


>gi|154491665|ref|ZP_02031291.1| hypothetical protein PARMER_01276 [Parabacteroides merdae ATCC
           43184]
 gi|154087906|gb|EDN86951.1| hypothetical protein PARMER_01276 [Parabacteroides merdae ATCC
           43184]
          Length = 399

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VVVA SGG+D+S  V  L K  GY+V                     + + +     
Sbjct: 2   KKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSEEQLKQNEE 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQ 135
               +    +   D  + +    +              P    +  + F  L       +
Sbjct: 51  NAYKLGATKYVTIDVTKEYYEKSLKYMVFGNVLRNGTYPISVSSERI-FQALAIARYANE 109

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 110 IGADAIAHG 118


>gi|58582298|ref|YP_201314.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426892|gb|AAW75929.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 413

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 12/141 (8%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +    N       P    +V+A SGG+D+S     L+  GY V  V              
Sbjct: 4   QTASTNPESPIPTPGTKDIVLAFSGGLDTSFCIPYLQERGYAVHTVF-----------AD 52

Query: 65  GSCCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                 ++     +    +   SH   D         + PF  +    +   P +  +R 
Sbjct: 53  TGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRY 112

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +     L    +LG  ++A G
Sbjct: 113 LIVDAALKRAEELGTRIIAHG 133


>gi|46191095|ref|ZP_00120525.2| COG0137: Argininosuccinate synthase [Bifidobacterium longum DJO10A]
 gi|189439673|ref|YP_001954754.1| argininosuccinate synthase [Bifidobacterium longum DJO10A]
 gi|239622229|ref|ZP_04665260.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133074|ref|YP_004000413.1| argg [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481820|ref|ZP_07940848.1| arginosuccinate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688764|ref|YP_004208498.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           157F]
 gi|229889862|sp|B3DSY7|ASSY_BIFLD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189428108|gb|ACD98256.1| Argininosuccinate synthase [Bifidobacterium longum DJO10A]
 gi|239514226|gb|EEQ54093.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517163|emb|CBK70779.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum
           F8]
 gi|311774067|gb|ADQ03555.1| ArgG [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916757|gb|EFV38151.1| arginosuccinate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460100|dbj|BAJ70720.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 412

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R+V+A SGG+D+SV  + LK   G DV+ V+L                 G+ +   ++
Sbjct: 4   NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSL------------DVGQGGESLETIKQ 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V  YV D  + F N   +    + A  E   P V   +R +    L+    Q 
Sbjct: 52  RALACGAVESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADTISHG 119


>gi|320580044|gb|EFW94267.1| Arginosuccinate synthetase [Pichia angusta DL-1]
          Length = 415

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+VI   +                  +D   A  
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVIA-FMANI------------GQEEDFAAAEE 48

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               I  + YV  D  + F   V+ P           Y  G +    V     +      
Sbjct: 49  KALAIGATKYVLVDVRKEFVEQVLFPAVQVNAIYENVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V  + G   ++ G
Sbjct: 103 EVAEKEGCFAVSHG 116


>gi|238923030|ref|YP_002936543.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Eubacterium rectale ATCC 33656]
 gi|259647682|sp|C4ZCQ4|GUAA_EUBR3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|238874702|gb|ACR74409.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Eubacterium rectale ATCC 33656]
          Length = 524

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV+AALL +  G  +  V     +     K +G    G    D   
Sbjct: 215 DGKVLLALSGGVDSSVLAALLAKAIGKQLTCVF---VDHGLLRKNEGDEVEGVFGKDG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
              + +++    + +ER+ + +                 +     ++        +++G 
Sbjct: 270 ---SFDINFVRVNAQERYYSKLAGVTEPERKRK------IIGEEFIRV--FEEEAKKIGK 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +  G  G+          + +               D+  PL ++ K
Sbjct: 319 VDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPEHVDFKDIVEPLRNLFK 370

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 371 DEVRKVGLELGLP 383


>gi|45358644|ref|NP_988201.1| putative LPS biosynthesis protein WbpG [Methanococcus maripaludis
           S2]
 gi|45047510|emb|CAF30637.1| putative LPS biosynthesis protein WbpG [Methanococcus maripaludis
           S2]
          Length = 370

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 24/137 (17%)

Query: 14  LDKNPKDMRV--VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAG 70
           + KN K+ R   ++ +SGGVDS+ VA L+K+ G   + V L   +NS  A          
Sbjct: 57  IKKNGKNKRYDCIIGVSGGVDSTYVAYLVKKLGLKPLAVHLDNGWNSELA---------- 106

Query: 71  QDVYDARRVCDTINVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             + +       +++  Y  V ++EE            S+     P   +  +  +  + 
Sbjct: 107 --IMNIENTLKKLDIDLYTRVLNWEE------FKDLQLSFLKASVPDLEIPTDHAI-IAT 157

Query: 129 LLSVTRQLGADVLATGH 145
           L  V  + G   + +GH
Sbjct: 158 LYEVAHKFGIKYIISGH 174


>gi|289671195|ref|ZP_06492270.1| GMP synthase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNASDRYFAK---------LEG---VSDPEAKRKIIGNLFVDIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|229814981|ref|ZP_04445319.1| hypothetical protein COLINT_02024 [Collinsella intestinalis DSM
           13280]
 gi|229809468|gb|EEP45232.1| hypothetical protein COLINT_02024 [Collinsella intestinalis DSM
           13280]
          Length = 434

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 42/211 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD- 72
           ++      +VV+A SGG+D+SV    L+ +        + L          G+     D 
Sbjct: 1   MNNQQSKEKVVLAYSGGLDTSVCIKWLQHE--------MDL----DVIAMLGNVGQEHDG 48

Query: 73  VYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLL 130
           +         +  V+  V D  + F +  I    ++ A  E   P +   +R +    L+
Sbjct: 49  LEKVAEKARMLGCVAVEVVDMTDEFASDYITCAIAANAMYENKYPLLSALSRPLISKHLV 108

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLR 189
               + GA  +A G                   C       DQ  F  + T       + 
Sbjct: 109 ETAHKYGATCVAHG-------------------CTGK--GNDQVRFETSITALDPSLKVI 147

Query: 190 FPLGD----MKKESVRDLAREMGLDIADKSD 216
            P+ +    M+ + +   A + G+ ++   +
Sbjct: 148 APVREWDLGMRPDEI-AYAEKHGVPVSQSIE 177


>gi|84489110|ref|YP_447342.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|84372429|gb|ABC56699.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 283

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 37/194 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA-GQD 72
            K+ ++++ +SGG DS +   +L    +  G D        +        +G C      
Sbjct: 27  NKNEKIMIGVSGGKDSILTLHMLYQYRQESGID--------FELEAVCIDEGICGYREHG 78

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +  A+  C  +++   +  +++   N  +    + Y +  T +PC    R +    L  V
Sbjct: 79  IESAKENCKNLDIPLTIASFKDE-WNYNLDDIHNLYKS--TCMPCGVYRRYL----LNKV 131

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF------LFATTQQQLC 186
           +     D +ATGH         DD  +  +M        DQ+ F      L    +  + 
Sbjct: 132 SDSHKCDKIATGH-------NMDDEIQSFLMTFA---RNDQNKFPKFGPILNRIDKHMVP 181

Query: 187 DLRFPLGDMKKESV 200
               PL  + ++ V
Sbjct: 182 R-IKPLWQLPEKDV 194


>gi|59802458|ref|YP_209170.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neisseria gonorrhoeae FA 1090]
 gi|240114831|ref|ZP_04728893.1| GMP synthase [Neisseria gonorrhoeae PID18]
 gi|240117033|ref|ZP_04731095.1| GMP synthase [Neisseria gonorrhoeae PID1]
 gi|260441353|ref|ZP_05795169.1| GMP synthase [Neisseria gonorrhoeae DGI2]
 gi|268600487|ref|ZP_06134654.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID18]
 gi|268602719|ref|ZP_06136886.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID1]
 gi|291044713|ref|ZP_06570422.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae DGI2]
 gi|75355263|sp|Q5F4X9|GUAA_NEIG1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|59719353|gb|AAW90758.1| putative GMP synthetase [Neisseria gonorrhoeae FA 1090]
 gi|268584618|gb|EEZ49294.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID18]
 gi|268586850|gb|EEZ51526.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID1]
 gi|291011607|gb|EFE03603.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae DGI2]
          Length = 521

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|319408158|emb|CBI81811.1| GMP synthase [Bartonella schoenbuchensis R1]
          Length = 518

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 70/207 (33%), Gaps = 44/207 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     RV+  +SGGVDSSV A LL    G  +  + +     RK    +        
Sbjct: 215 IRKKVGKGRVICGLSGGVDSSVTAILLHEAIGEQLTCIFVDHGLMRKNEAEEVLTLFR-- 272

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                   D  N+     +   RF NA           GET     +  R       + V
Sbjct: 273 --------DNYNIKLVHVNAAHRFINA---------LKGET---DPEKKRKTIGRLFIEV 312

Query: 133 ----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
                +++ GA  LA        I S   VGD    +                +    ++
Sbjct: 313 FEEEAKKVGGAQFLAQGTLYPDVIESISAVGDGITIKSHHN------------VGGLPER 360

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR L RE+GL 
Sbjct: 361 MNMQLVEPLRELFKDDVRSLGRELGLP 387


>gi|227512153|ref|ZP_03942202.1| argininosuccinate synthase [Lactobacillus buchneri ATCC 11577]
 gi|227524117|ref|ZP_03954166.1| argininosuccinate synthase [Lactobacillus hilgardii ATCC 8290]
 gi|227084547|gb|EEI19859.1| argininosuccinate synthase [Lactobacillus buchneri ATCC 11577]
 gi|227088748|gb|EEI24060.1| argininosuccinate synthase [Lactobacillus hilgardii ATCC 8290]
          Length = 431

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++A SGG+D+SV    L   GYDV+   + +   +  +  K        V     
Sbjct: 3   ENKKVILAYSGGLDTSVAIPWLNDKGYDVVACCINVGEGKDLNFIKQKALNVGAVEA--- 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D  + F +        + A  E   P +   +R +    L+ +  Q  
Sbjct: 60  ---------YVIDALDDFADHYASVALKANAMYEGAYPLISALSRPLISKALVDLAHQEH 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT--QQQLCDLRFPL--G 193
           A  +A G                   C       DQ  F  A      QL  +  P+   
Sbjct: 111 AQAVAHG-------------------CTGK--GNDQVRFEVAIHSLDPQLE-VLSPVRDW 148

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   D A++  + I    DS
Sbjct: 149 HWSREQEIDYAKKHNIPIPIDLDS 172


>gi|84684953|ref|ZP_01012853.1| GMP synthase (glutamine-hydrolyzing) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667288|gb|EAQ13758.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           HTCC2654]
          Length = 526

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 68/232 (29%), Gaps = 52/232 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+  +SGGVDSSV A LL    G  +  V                      + +A  V 
Sbjct: 230 HVICGLSGGVDSSVTAVLLHEAIGDQLTCVF--------------VDHGLLRLNEAEEVV 275

Query: 81  ----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               D  N+     D  + F                 P         +          ++
Sbjct: 276 TMFRDHYNMKLIHADESDLF--------LGELEGVSDPEQKRKTIGKLFIDVFQKYASEI 327

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             AD LA G      +          +  +           +    ++    L  PL ++
Sbjct: 328 EDADFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLREL 380

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
            K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 381 FKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 417


>gi|315122142|ref|YP_004062631.1| GMP synthase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495544|gb|ADR52143.1| GMP synthase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 520

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 68/204 (33%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSR--KASKRKGSCCA 69
           + K   D RV+ A+SGGVDSSV A L+    Y+ IG  +T  L +    + ++       
Sbjct: 216 IKKQVGDERVICALSGGVDSSVAAFLI----YEAIGKNLTCVLVDHGFMRKNEVDNVVGL 271

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            +   D             V D  ERF      VI P       G+  +   +     K 
Sbjct: 272 FKKYPD---------FPLIVVDASERFIGKLKNVIDPEDKRKIIGKLFIEVFEEEAE-KI 321

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  + LG   L          + G     +              Y      +    
Sbjct: 322 GG----AKFLGQGTLYPDVIESVSFFGGPSSVIKSHHNVGGLP----EYMNMDLVE---- 369

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
               PL D+ K+ VR L +E+GL 
Sbjct: 370 ----PLRDLFKDEVRLLGKELGLS 389


>gi|306821357|ref|ZP_07454965.1| PP-loop superfamily ATP-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550575|gb|EFM38558.1| PP-loop superfamily ATP-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 278

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 52/221 (23%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSR 58
           M           +  K   D +V++A SGGVDSS+V  + +   +  +VI VT       
Sbjct: 5   MYKLSEKEERLFEYIKKLADEKVLIAFSGGVDSSLVLKIAREVTEKSNVIAVTFNTILHP 64

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
           K            D+   + +    +V+  + +  E     ++               C 
Sbjct: 65  KN-----------DIEIVKNLAQDFDVTLQIVEINEITNEKILYNDVKR---------CY 104

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            C + +           L  D L  GH                     MD       F++
Sbjct: 105 YCKKDI-----FEKIVMLK-DSLNFGHI--------------------MDGSNFDDVFVY 138

Query: 179 ATTQQQLC--DLRFPLGDM--KKESVRDLAREMGLDIADKS 215
              +  L   ++  PL DM   K  VR+LA+++ + +A + 
Sbjct: 139 RPGKVALKELNVISPLQDMKFTKNEVRELAKKLNISVASRP 179


>gi|304316376|ref|YP_003851521.1| NAD+ synthetase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777878|gb|ADL68437.1| NAD+ synthetase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 545

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VV +SGG+DS+V  AL  +  G + V+GV++                +     DAR 
Sbjct: 290 KKAVVGLSGGIDSAVTCALAVKALGRENVLGVSM-----------PSRYSSEGSKDDARD 338

Query: 79  VCDTINVSHYVFDYEERFRNAV 100
           +   + + + V   E+ F++ +
Sbjct: 339 LAQNLGIQYRVIPIEDVFKSYI 360


>gi|240102078|ref|YP_002958386.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
 gi|239909631|gb|ACS32522.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
          Length = 325

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 37/207 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ V +SGG DS V+  LL +      ++++ +T+             +    + V 
Sbjct: 48  KGERIAVGVSGGKDSVVLMHLLAKLREKFPFELVAITI---------DEGIAGYRPKSVE 98

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFS 127
            A+R    + + H ++ ++E      I             +  GE    C  C    ++ 
Sbjct: 99  IAKRNARKLGIEHRIYSFKE-----YIGFTLDETVGIMGSFERGERVGACSYCGVWRRW- 152

Query: 128 DLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQ 184
            LL+   + +GAD LA GH +       DD  +  IM   R       ++   +     +
Sbjct: 153 -LLNYAAKDVGADKLAVGHNL-------DDEVQMFIMNILRGDIARLGRTGPYYEEIHPE 204

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDI 211
           L     PL ++ ++ +   A    +++
Sbjct: 205 LVPRIKPLREIPEKEIVLYAVLNNIEV 231


>gi|320449234|ref|YP_004201330.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermus
           scotoductus SA-01]
 gi|320149403|gb|ADW20781.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermus
           scotoductus SA-01]
          Length = 411

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 43/192 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV  +SGG+DS V A  L R G +V+ V    +       R+           A+ + +
Sbjct: 178 KVVALLSGGIDSPVAAYRLMRRGAEVVLVHFHPFPLLSGQSREK----------AKAIAE 227

Query: 82  TI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +      ++ ++  + E  +  +I+    +Y         V   R +      ++ ++ 
Sbjct: 228 RLARFQHRITLHLVPFSEV-QRQIILEAPKAYR-------VVLYRRYM-LRIAEAIAKEE 278

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LATG  +        +                    L    Q     +  PL    
Sbjct: 279 GALALATGDSLGQVASQTLEN-------------------LHVVNQAATLPVFRPLIGFD 319

Query: 197 KESVRDLAREMG 208
           K  ++  A  +G
Sbjct: 320 KVEIKAEAERIG 331


>gi|308751119|gb|ADO44602.1| argininosuccinate synthase [Hydrogenobacter thermophilus TK-6]
          Length = 401

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++A SGG+D+SV+   L   GY+VI            +   G       + +  R  
Sbjct: 6   KRVILAYSGGLDTSVMVRWLTEKGYEVI----------TYTADVGQGEELSHIPEKARQA 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V   V D +E F     +P   + A  E   P     +R +    L+   ++  AD
Sbjct: 56  GA--VEAIVEDLKEEFAREYCLPTLRALALYEGRYPLSASLSRPLISKKLVYYAQKFKAD 113

Query: 140 VLATG 144
            +A G
Sbjct: 114 FVAHG 118


>gi|304392676|ref|ZP_07374616.1| argininosuccinate synthase [Ahrensia sp. R2A130]
 gi|303295306|gb|EFL89666.1| argininosuccinate synthase [Ahrensia sp. R2A130]
          Length = 417

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 25/142 (17%)

Query: 14  LDKNPKD--MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + K  K    +VV+A SGG+D+S++   L+   G +V+  T        A   +     G
Sbjct: 1   MAKIKKGDVKKVVLAYSGGLDTSIILKWLQTEYGAEVVTFT--------ADLGQSEIEGG 52

Query: 71  QDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNR 122
           +++ +A+R  + + +   Y+ D  E F    + P   +       Y  G +    +   R
Sbjct: 53  KELEEAKRKAENLGITEIYIEDVREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKR 112

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
                 L+ + R+ GAD +A G
Sbjct: 113 ------LIEIARETGADAIAHG 128


>gi|294787540|ref|ZP_06752793.1| argininosuccinate synthase [Parascardovia denticolens F0305]
 gi|315226874|ref|ZP_07868662.1| argininosuccinate synthase [Parascardovia denticolens DSM 10105]
 gi|294484896|gb|EFG32531.1| argininosuccinate synthase [Parascardovia denticolens F0305]
 gi|315121006|gb|EFT84138.1| argininosuccinate synthase [Parascardovia denticolens DSM 10105]
          Length = 407

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    L+   G +V+ V+L L    ++ +            +A    
Sbjct: 3   RIVLAYSGGLDTSVAIPFLQDRTGKEVVAVSLDLGQGGESLETIRQRALACGAVEA---- 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  +V D  + F +   +P   + A  +   P V   +R +    L+    + GAD
Sbjct: 59  -------HVLDARDEFASDYCMPALKANAMYQGAYPLVSAISRPLIAKHLVDAAHRFGAD 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 TIAHG 116


>gi|258545827|ref|ZP_05706061.1| GMP synthase (glutamine-hydrolyzing) [Cardiobacterium hominis ATCC
           15826]
 gi|258518843|gb|EEV87702.1| GMP synthase (glutamine-hydrolyzing) [Cardiobacterium hominis ATCC
           15826]
          Length = 525

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AAL+ R  G  +  V                      + +A+ 
Sbjct: 221 NDEVILGLSGGVDSSVAAALIHRAIGDQLTCVF--------------VDHGLLRLNEAKS 266

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---- 130
           V       + V+    D    F             AG T     +  R +  ++ +    
Sbjct: 267 VMQMFARNLGVNVIHVDASADFMAK---------LAGVT---DPEQKRKIIGAEFVEVFQ 314

Query: 131 -SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++  A  LA G      +       ++    +           +    +     L 
Sbjct: 315 REAGKRANARWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPETLNLKLL 367

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR+L   +GL 
Sbjct: 368 EPLRDLFKDEVRELGVALGLP 388


>gi|196249022|ref|ZP_03147721.1| ExsB family protein [Geobacillus sp. G11MC16]
 gi|196211251|gb|EDY06011.1| ExsB family protein [Geobacillus sp. G11MC16]
          Length = 274

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 43/199 (21%)

Query: 19  KDM-RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K+M  V+VA SGGVDS+ + A+ K   G  V+ VT                   ++V  A
Sbjct: 17  KEMGNVLVAFSGGVDSTFLLAMAKEALGDQVLAVT-----------AVSETFPAREVQHA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++ + I V H      E      +               C  C   + ++ L  + R+ 
Sbjct: 66  TKLAEQIGVKHIKIQIHELENEDFVKNDLHR---------CFHCKHNL-YTHLGELARKY 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G       + +     + D G+ R  +         Q        + QL           
Sbjct: 116 G-----HMYTVVDGSNMDDLGEYRPGLQAAR-----QLGVRSPLQEVQL----------Y 155

Query: 197 KESVRDLAREMGLDIADKS 215
           K+ +R L++EM L+  DK 
Sbjct: 156 KKEIRILSKEMELETWDKP 174


>gi|328957417|ref|YP_004374803.1| argininosuccinate synthase [Carnobacterium sp. 17-4]
 gi|328673741|gb|AEB29787.1| argininosuccinate synthase [Carnobacterium sp. 17-4]
          Length = 404

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    L  +GYDVI   L         + K          +   V
Sbjct: 3   KGKVVLAYSGGLDTSVSIKWLMDEGYDVIACCL------DVGEGKNLDFIKDKAIEIGAV 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                   Y  D ++ F N   +    ++   E   P +   +R +    L+ V  +  A
Sbjct: 57  AS------YTIDAKDEFANDFALIALQAHTYYEGKYPLISALSRPLIAKKLVEVAIKEEA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 VAVAHG 116


>gi|320539284|ref|ZP_08038954.1| GMP synthetase (glutamine aminotransferase) [Serratia symbiotica
           str. Tucson]
 gi|320030676|gb|EFW12685.1| GMP synthetase (glutamine aminotransferase) [Serratia symbiotica
           str. Tucson]
          Length = 499

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 201 EDHVILGLSGGVDSSVTAMLLYRAIGTRLTCVFVDNGLLRLNEADQVLEMFGD------- 253

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
                          +              F S  A  + P       R +     +   
Sbjct: 254 ----------GFGLNIVHVAAE------NRFLSELAGVDEPE----AKRKIIGRVFVEVF 293

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +Q     LA G      +        +  + +           +    Q+    L
Sbjct: 294 DEEACKQSDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPQEMKLGL 346

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 347 VEPLKELFKDEVRKIGLELGLP 368


>gi|296393962|ref|YP_003658846.1| argininosuccinate synthase [Segniliparus rotundus DSM 44985]
 gi|296181109|gb|ADG98015.1| argininosuccinate synthase [Segniliparus rotundus DSM 44985]
          Length = 419

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 67/202 (33%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + +  G++V+ V                   G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGQETGFEVVAV------------AVDVGQGGEDLSVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F      P  ++ A      P V   +R +    L++V R+ G 
Sbjct: 52  IDCGAVEAVVIDARDEFAEQYCQPVVAANALYMDRYPLVSAISRPLIAKHLVAVAREHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM-- 195
             +A G                   C       DQ  F    T          P+ D   
Sbjct: 112 TTVAHG-------------------CTGK--GNDQVRFECGITALAPDLTVLAPVRDYAW 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            +E     A E  L IA    S
Sbjct: 151 TREKAIAFAEERKLPIAASKKS 172


>gi|238758844|ref|ZP_04620017.1| GMP synthase [glutamine-hydrolyzing] [Yersinia aldovae ATCC 35236]
 gi|238702952|gb|EEP95496.1| GMP synthase [glutamine-hydrolyzing] [Yersinia aldovae ATCC 35236]
          Length = 525

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 59/215 (27%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFGDK 280

Query: 68  CAGQDVYDAR------RVC------DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                V+ A        +           +   V  + E F           + A  T  
Sbjct: 281 FGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRV--FVELFDEEACKQDLVKWLAQGTIY 338

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
           P V  +               G   +   H+                             
Sbjct: 339 PDVIES----------AASATGKAHVIKSHHN---------------------------- 360

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    L  PL ++ K+ VR +  E+GL 
Sbjct: 361 -VGGLPKEMKLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|118468824|ref|YP_888064.1| argininosuccinate synthase [Mycobacterium smegmatis str. MC2 155]
 gi|166220992|sp|A0QYS6|ASSY_MYCS2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118170111|gb|ABK71007.1| argininosuccinate synthase [Mycobacterium smegmatis str. MC2 155]
          Length = 399

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGKEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   S A      P V   +R +    L+   R+ G 
Sbjct: 52  LDCGAVEAVVVDARDEFAEEYCLPTIQSNALYMDRYPLVSAISRPLIVKHLVKAAREHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            V+A G                    +  D  R +  F       Q   +  P+ D    
Sbjct: 112 GVVAHG-----------------CTGKGNDQVRFEVGFASLAPDLQ---VLAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENAIPINVTKRS 172


>gi|50955510|ref|YP_062798.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81390598|sp|Q6AD51|GUAA_LEIXX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50951992|gb|AAT89693.1| GMP synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 503

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDS+V AAL+ +  G  ++ V +         +R  +    +D   A    
Sbjct: 200 RVLCALSGGVDSAVAAALVHKAIGDQLVCVFV----DHGLLRRDEARQVQEDYVSAT--- 252

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               V     D EE+F             A    +   +  R +   + + V  +  AD+
Sbjct: 253 ---GVRLITVDAEEQF------------LAALESVSDPEAKRKIIGREFIRVFERAQADL 297

Query: 141 LATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +A        +     G     +            +            Q   L  PL  +
Sbjct: 298 VAEAASEGDPIRFLVQGTLYPDVVESGGGAGTANIKSHHNVSGLPEDLQFE-LVEPLCTL 356

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + RE+GL 
Sbjct: 357 FKDEVRAIGRELGLP 371


>gi|295105625|emb|CBL03169.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 516

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 36/209 (17%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSR--KASKRKGS 66
           N   L +   + +V+ A+SGGVDSSV+AA+L +  G  +  V     +    + ++++  
Sbjct: 205 NVKALRERIGEGKVLCALSGGVDSSVLAAMLAKAIGKQLTCVF---VDHGLLRKNEKEEV 261

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C             +  +++    D  +R+ + +                 +     ++ 
Sbjct: 262 CSVFGPGN-----ANGFDINFICVDARDRYFSKLKGITEPERKRK------IIGEEFIRV 310

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATT 181
                  +++G  D LA G      +  G  G+    +       +    D         
Sbjct: 311 --FEEEAKKIGKVDFLAQGTIYPDVVESGLGGESTVIKSHHNVGGLPDTVD--------- 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL ++ K+ VR   RE+GL 
Sbjct: 360 ---FKELVEPLRNLFKDEVRQAGRELGLP 385


>gi|281349494|gb|EFB25078.1| hypothetical protein PANDA_003249 [Ailuropoda melanoleuca]
          Length = 375

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L                  +D  +AR+    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANI------------GQKEDFEEARKKAMK 53

Query: 83  INV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           +     ++ D  + F    I P           Y  G +   PC+   +       + + 
Sbjct: 54  LGAKKVFIEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIA 106

Query: 134 RQLGADVLATG 144
           ++ GA  ++ G
Sbjct: 107 QREGAKYVSHG 117


>gi|238797973|ref|ZP_04641463.1| GMP synthase [glutamine-hydrolyzing] [Yersinia mollaretii ATCC
           43969]
 gi|238718178|gb|EEQ10004.1| GMP synthase [glutamine-hydrolyzing] [Yersinia mollaretii ATCC
           43969]
          Length = 525

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++ +SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FS 127
           + +A +V +         +              F S+ A  + P       R +    F 
Sbjct: 267 LNEADQVLEMFGDKFGLNIVHVAAE------DRFLSALAGVDEPE----AKRKIIGRVFV 316

Query: 128 DLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L      +Q     LA G      +        +  + +           +    ++  
Sbjct: 317 ELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMK 369

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 370 LGLVEPLKELFKDEVRKIGLELGLP 394


>gi|288817514|ref|YP_003431861.1| argininosuccinate synthase [Hydrogenobacter thermophilus TK-6]
 gi|288786913|dbj|BAI68660.1| argininosuccinate synthase [Hydrogenobacter thermophilus TK-6]
          Length = 398

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++A SGG+D+SV+   L   GY+VI            +   G       + +  R  
Sbjct: 3   KRVILAYSGGLDTSVMVRWLTEKGYEVI----------TYTADVGQGEELSHIPEKARQA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V   V D +E F     +P   + A  E   P     +R +    L+   ++  AD
Sbjct: 53  GA--VEAIVEDLKEEFAREYCLPTLRALALYEGRYPLSASLSRPLISKKLVYYAQKFKAD 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 FVAHG 115


>gi|229844928|ref|ZP_04465065.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 6P18H1]
 gi|229812062|gb|EEP47754.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 6P18H1]
          Length = 523

 Score = 59.0 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 133 ---TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              +++L     LA G      +        +  + +           +          L
Sbjct: 318 DDESKELTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|325841863|ref|ZP_08167494.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1]
 gi|325489818|gb|EGC92171.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1]
          Length = 511

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDSSVVAAL+ R     IG  L          RKG   +  + +D +     
Sbjct: 219 VLCALSGGVDSSVVAALIHRA----IGDQLTCMFVDHGLLRKGEAESVVETFDGK----- 269

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N++    D +ERF N +                 V C     F +     +      LA
Sbjct: 270 FNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYC-----FDE--ESAKLKDMKFLA 322

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G      +  G D  +     +           +    +    +L  PL  + K+ VR 
Sbjct: 323 QGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMEFELIEPLNTLFKDEVRQ 372

Query: 203 LAREMGLD 210
           L  E+GL 
Sbjct: 373 LGLELGLP 380


>gi|293374623|ref|ZP_06620939.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Turicibacter sanguinis PC909]
 gi|292646773|gb|EFF64767.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Turicibacter sanguinis PC909]
          Length = 511

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDSSVVAAL+ R     IG  L          RKG   +  + +D +     
Sbjct: 219 VLCALSGGVDSSVVAALIHRA----IGDQLTCMFVDHGLLRKGEAESVVETFDGK----- 269

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N++    D +ERF N +                 V C     F +     +      LA
Sbjct: 270 FNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYC-----FDE--ESAKLKDMKFLA 322

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G      +  G D  +     +           +    +    +L  PL  + K+ VR 
Sbjct: 323 QGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMEFELIEPLNTLFKDEVRQ 372

Query: 203 LAREMGLD 210
           L  E+GL 
Sbjct: 373 LGLELGLP 380


>gi|289665798|ref|ZP_06487379.1| GMP synthase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 521

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNASDRYFAK---------LEG---VSDPEAKRKIIGNLFVDIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|71900831|ref|ZP_00682949.1| Argininosuccinate synthase [Xylella fastidiosa Ann-1]
 gi|71729401|gb|EAO31514.1| Argininosuccinate synthase [Xylella fastidiosa Ann-1]
          Length = 401

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               +V+A SGG+D+S     LK  GY V  V          +   G     +D  + R 
Sbjct: 2   SKKNIVLAFSGGLDTSFCIPYLKEQGYAVHTVF---------TDTGGVDEDERDFIEKR- 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V SH   D      +  +     +  A +   P +  +R +    +L     LG
Sbjct: 52  -AAELGVASHLTVDGGPSIWDGFVKQLVWAGEAYQGQYPLLVSDRYLIVDAVLQRADALG 110

Query: 138 ADVLATG 144
              +A G
Sbjct: 111 TCAVAHG 117


>gi|160890962|ref|ZP_02071965.1| hypothetical protein BACUNI_03407 [Bacteroides uniformis ATCC 8492]
 gi|270294277|ref|ZP_06200479.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481491|ref|ZP_07940556.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859183|gb|EDO52614.1| hypothetical protein BACUNI_03407 [Bacteroides uniformis ATCC 8492]
 gi|270275744|gb|EFA21604.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902337|gb|EFV24226.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 435

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 46/201 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +  G        
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLKAIGDKLVCVHVNHGLMRKGESEAVVEIFG-------- 191

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                    +  +    D  +RF      V  P              +     ++     
Sbjct: 192 -------KELKANLIYVDATDRFLSKLENVADP--EEKRK-------IIGGEFIRV--FE 233

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              R+L G D L  G        + + G +   M +           +    +    +L 
Sbjct: 234 EEARKLDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELV 283

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR    E+GL 
Sbjct: 284 EPLRQLFKDEVRACGVELGLP 304


>gi|49473838|ref|YP_031880.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bartonella quintana str. Toulouse]
 gi|81647394|sp|Q6G197|GUAA_BARQU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49239341|emb|CAF25674.1| GMP synthase [Bartonella quintana str. Toulouse]
          Length = 518

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 73/208 (35%), Gaps = 46/208 (22%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQ 71
           + K     RV+  +SGGVDSSVVA LL       IG  +T  L +     K +    A +
Sbjct: 215 IRKKVGKSRVICGLSGGVDSSVVAVLLHEA----IGDQLTCILVDHGLMRKNE----AEE 266

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +   R   D  N+     +    F NA           GET     +  R       + 
Sbjct: 267 VLKLFR---DHYNIELIHVNAANIFLNA---------LEGET---DPEKKRKTIGRLFIE 311

Query: 132 VTRQ-----LGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V  +      G + LA        I S   +G+    +                +    +
Sbjct: 312 VFEEETKKIEGVEFLAQGTLYPDVIESVSAIGESVTIKSHHN------------VGGLPE 359

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL ++ K+ VR L RE+GL 
Sbjct: 360 RMNMKLVEPLRELFKDEVRSLGRELGLP 387


>gi|84516251|ref|ZP_01003611.1| GMP synthase (glutamine-hydrolyzing) [Loktanella vestfoldensis
           SKA53]
 gi|84509947|gb|EAQ06404.1| GMP synthase (glutamine-hydrolyzing) [Loktanella vestfoldensis
           SKA53]
          Length = 519

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            R+G   A + V   R 
Sbjct: 221 DKQVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDHGLLRQGE--AEEVVTMFR- 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D   +     D +E F            +  ET        R +     + V ++   
Sbjct: 273 --DHYQMPLIHADEKELFLGK-----LDGVSDPETK-------RKIIGGLFIDVFQKYAN 318

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 319 GIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 371

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 372 ELFKDEVRALGAELGLPPS---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|262276498|ref|ZP_06054307.1| GMP synthase [glutamine-hydrolyzing] [Grimontia hollisae CIP
           101886]
 gi|262220306|gb|EEY71622.1| GMP synthase [glutamine-hydrolyzing] [Grimontia hollisae CIP
           101886]
          Length = 525

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVA L+ R  G  +  V +                    + +A++
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGDKLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D   ++    D EERF         S+      P         V        ++
Sbjct: 273 VMEMFGDHFGLNIIHVDAEERF--------LSALEGISDPEEKRKKIGHVFVDVFDEESK 324

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L  A  LA G      +        +  + +           +          L  PL 
Sbjct: 325 KLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPLK 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+GL 
Sbjct: 378 ELFKDEVRKIGLELGLP 394


>gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli Kim 5]
          Length = 493

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 32/225 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R++VA+SGG DS+ +  LL      V     L++         +    +  +      +C
Sbjct: 24  RILVAISGGSDSTGLLLLLDEA---VKAAPHLKISLCAATVDHRLRAGSADEAQQVAALC 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ + H +                +++   +     +   R  ++  L     +LGA++
Sbjct: 81  ASLGIPHII----------------AAWQGDKPKTGVMAAAREARYDLLAESAERLGANL 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +ATGH +        D +R  +  R M  E+  S    A    +   +  PL    +  +
Sbjct: 125 IATGHTL--------DDQRETLQMRGMRTEQVSSGIADAVLFNRRFWILRPLLFSSRADI 176

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           R   RE G+   +   ++D+    + +   + +R++A  A+E DI
Sbjct: 177 RAFLRERGVPWIEDPSNEDV----KYERVRIRRRLSADPAMETDI 217


>gi|145224108|ref|YP_001134786.1| argininosuccinate synthase [Mycobacterium gilvum PYR-GCK]
 gi|315444444|ref|YP_004077323.1| argininosuccinate synthase [Mycobacterium sp. Spyr1]
 gi|189046394|sp|A4T9W4|ASSY_MYCGI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145216594|gb|ABP45998.1| Argininosuccinate synthase [Mycobacterium gilvum PYR-GCK]
 gi|315262747|gb|ADT99488.1| argininosuccinate synthase [Mycobacterium sp. Spyr1]
          Length = 400

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGKEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   S A      P V   +R +    L+   R+ G 
Sbjct: 52  IDCGAVEAVVVDARDEFAEQYCLPAIQSNALYMDRYPLVSALSRPLIVKHLVDAAREHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            ++A G                    +  D  R +  F           +  P+ D    
Sbjct: 112 GIVAHG-----------------CTGKGNDQVRFEVGFASLAPDL---KVLAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENAIPINVTKRS 172


>gi|295101943|emb|CBK99488.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Faecalibacterium prausnitzii L2-6]
          Length = 516

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 36/209 (17%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSR--KASKRKGS 66
           N   L K     +V+ A+SGGVDSSV+AA+L +  G  +  V     +    + ++++  
Sbjct: 205 NVEALRKRIGSGKVLCALSGGVDSSVLAAMLAKAIGKQLTCVF---VDHGLLRKNEKEEV 261

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C             +  +++    D  +R+   +                 +     ++ 
Sbjct: 262 CSVFGPGN-----ANGFDINFICVDARDRYFAKLAGVTEPERKRK------IIGEEFIRV 310

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATT 181
                  +Q+G  D LA G      +  G  G+    +       +    D         
Sbjct: 311 --FEEQAKQIGKVDFLAQGTIYPDVVESGLGGESTVIKSHHNVGGLPDTVD--------- 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL ++ K+ VR   RE+GL 
Sbjct: 360 ---FKELVEPLRNLFKDEVRQAGRELGLP 385


>gi|254173299|ref|ZP_04879972.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
 gi|214032708|gb|EEB73537.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
          Length = 325

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 27/202 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ V +SGG DS V+  LL +      ++++ +T+             +      V 
Sbjct: 48  KGERIAVGVSGGKDSVVLMHLLAKLREKFPFELVAITI---------DEGIAGYRPPSVE 98

Query: 75  DARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            A+R    + + H ++ ++E   F     V    S+  GE    C  C    ++  LL+ 
Sbjct: 99  IAKRNAKKLGIEHRIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWRRW--LLNY 156

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLR 189
             + +GAD LA GH +       DD  +  IM   R       ++   +     +L    
Sbjct: 157 AAKDVGADKLAVGHNL-------DDEVQMFIMNILRGDIARLGRTGPYYEEIHPELVPRI 209

Query: 190 FPLGDMKKESVRDLAREMGLDI 211
            PL ++ ++ +   A    +++
Sbjct: 210 KPLREIPEKEIVLYAVLNNIEV 231


>gi|156365939|ref|XP_001626899.1| predicted protein [Nematostella vectensis]
 gi|156213792|gb|EDO34799.1| predicted protein [Nematostella vectensis]
          Length = 701

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 41/214 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLY----NSRKASKRKGSCCAGQDV 73
           + +V+V +SGGVDS+V AALL +  G D V+ V +             +    C      
Sbjct: 244 NHKVLVLVSGGVDSTVCAALLHKALGPDRVVAVHIDNGFMRKQESMQVEESLKC------ 297

Query: 74  YDARRVCDTINVSHYVFDYEERFRN--AVI----VPFASSYAAGETPL--PCVDCNRTVK 125
                    + +   V +   +F N   VI       A      +T       +  R + 
Sbjct: 298 ---------LGLRLKVLNAGFQFYNGSTVISGRKDQIAVKKQLTKTLNQVSDPEEKRKII 348

Query: 126 FSDLLSVT----RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFL 177
               + V     ++L  D   T  ++       D  +    +     D  +   + +  +
Sbjct: 349 GDTFMKVANDVVKELELDPNLT--FLAQGTLRPDLIESASHIASGQADAIKTHHNDTELV 406

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
               ++    +  PL D  K+ VR L  E+GL  
Sbjct: 407 RVLREK--GRVVEPLKDFHKDEVRQLGLELGLPT 438


>gi|182413073|ref|YP_001818139.1| ExsB family protein [Opitutus terrae PB90-1]
 gi|177840287|gb|ACB74539.1| ExsB family protein [Opitutus terrae PB90-1]
          Length = 320

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 64/196 (32%), Gaps = 36/196 (18%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           A+SGGVDSSVV  L    G+  +G  L+         R+G           R + + + V
Sbjct: 35  ALSGGVDSSVVTML----GHRALGPRLRTVLIENGLMREGEP------ERVRAIFEQLGV 84

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TRQLGADV 140
              + D  E F  A           G T     +  R                R+ GA  
Sbjct: 85  KVEIIDAREEFFAA---------LKGIT---DPEEKREAITQTFYKKVFGRIVRESGAKF 132

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G  +         G +R+           Q+ F +            PL  ++K+ V
Sbjct: 133 LLQGTILTDVDETVA-GIKRQHNVFAQLGIDPQATFGYEI--------LEPLIRLRKDGV 183

Query: 201 RDLAREMGLDIADKSD 216
           R + + +GL +     
Sbjct: 184 RKVGQALGLPVEMFKR 199


>gi|310779706|ref|YP_003968038.1| GMP synthase (glutamine-hydrolyzing) [Ilyobacter polytropus DSM
           2926]
 gi|309749029|gb|ADO83690.1| GMP synthase (glutamine-hydrolyzing) [Ilyobacter polytropus DSM
           2926]
          Length = 512

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 38/205 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D +V++A+SGGVDSSV A L+ +     IG         + S         + 
Sbjct: 208 EIREKVGDRKVILALSGGVDSSVAAVLIHKA----IG--------DQLSCFFVDTGLMRK 255

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--CVDCNRTV-KFSDL 129
             +A++V +T    HY  + E          F S  A    P     +  N  +  F D 
Sbjct: 256 -DEAKKVMETYG-EHYNINIECIDAE---DRFLSKLAGVSDPEEKRKIIGNEFIYIFED- 309

Query: 130 LSVTRQLGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
               R   AD LA        I S+   G     +                +    ++  
Sbjct: 310 -QKKRFKDADFLAQGTIYPDVIESQSVKGPSATIKSHHN------------VGGLPEEMK 356

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL ++ K+ VR + RE+G+ 
Sbjct: 357 FELLEPLRELFKDEVRQVGRELGIP 381


>gi|300741998|ref|ZP_07072019.1| GMP synthase (Glutamine amidotransferase) [Rothia dentocariosa
           M567]
 gi|300381183|gb|EFJ77745.1| GMP synthase (Glutamine amidotransferase) [Rothia dentocariosa
           M567]
          Length = 530

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 45/205 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV+ A+SGGVDSSV AAL+ +  G  +    +          R G     +     + 
Sbjct: 225 EDRVICALSGGVDSSVAAALVHKAVGDQLTCFFI-----DHGLLRAGEREQVE-----QD 274

Query: 79  VCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAGETPLPCVDCNRTVK 125
              ++ +     D  ERF            +  +I   F  S+   E             
Sbjct: 275 YAASMGIRVITIDESERFLTALAGVSEPEQKRKIIGREFIRSFEQAE------------- 321

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L+    + GA +            V   G       +           +    +   
Sbjct: 322 -RKLIEEAGEEGAQIKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLA 373

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL  + K+ VR + R++G+ 
Sbjct: 374 FELVEPLRTLFKDEVRAIGRQLGVP 398


>gi|68248831|ref|YP_247943.1| GMP synthase [Haemophilus influenzae 86-028NP]
 gi|145628537|ref|ZP_01784337.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 22.1-21]
 gi|145639865|ref|ZP_01795466.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittII]
 gi|81336754|sp|Q4QNW4|GUAA_HAEI8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68057030|gb|AAX87283.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae
           86-028NP]
 gi|144979007|gb|EDJ88693.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 22.1-21]
 gi|145271083|gb|EDK10999.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittII]
 gi|309750359|gb|ADO80343.1| GMP synthetase (glutamine-hydrolyzing) [Haemophilus influenzae
           R2866]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|315638188|ref|ZP_07893370.1| NAD(+) synthase [Campylobacter upsaliensis JV21]
 gi|315481724|gb|EFU72346.1| NAD(+) synthase [Campylobacter upsaliensis JV21]
          Length = 249

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 43/195 (22%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           N K   V++ +SGG+DS++VA L K+    +V  + +                   ++ D
Sbjct: 20  NAKAKGVILGLSGGIDSALVATLCKKALKDEVFALLM-----------PTQHSNEANLKD 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A ++C+ +N+ + + +        ++  F                   ++     +   +
Sbjct: 69  ALKLCEDLNLKYKIINI-----ETILQAFLKESEMTNQ----------IRTG---NYAAR 110

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +   +L     +++ L VG   K   ++              + T    L     P+G +
Sbjct: 111 IRMSLLYDYSALKNYLVVGTSNKSELML-------------GYGTIYGDLACAFNPIGKL 157

Query: 196 KKESVRDLAREMGLD 210
            K  +  LA+ + LD
Sbjct: 158 YKSEIYTLAKYLNLD 172


>gi|269468374|gb|EEZ80039.1| GMP synthase, PP-ATPase domain/subunit [uncultured SUP05 cluster
           bacterium]
          Length = 525

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVAALL +  G  +  V      L+L    +  +           
Sbjct: 227 NNNVLLGLSGGVDSSVVAALLHQAVGNQLTCVFVDNGLLRLNEGDEVMQTF--------- 277

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  D + V     + +++F +A+                  +  R +     + V 
Sbjct: 278 ------ADNMGVKVIRANAQKKFYDALAD------------EADPEKKRKIIGGAFIEVF 319

Query: 133 ---TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               + L     LA G      +        +  + +           +    +    +L
Sbjct: 320 EEEAKNLDNIKFLAQGTIYPDVIESAGAKSGKAKVIKSHHN-------VGGLPEDLKFEL 372

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  ++G+ 
Sbjct: 373 VEPLKELFKDEVRTIGVKLGIP 394


>gi|257458988|ref|ZP_05624107.1| GMP synthase [Campylobacter gracilis RM3268]
 gi|257443373|gb|EEV18497.1| GMP synthase [Campylobacter gracilis RM3268]
          Length = 511

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 39/196 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDV----IGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V+ A+SGGVDSSVVAALL    + V    I V            R G   A ++++  +
Sbjct: 217 KVLCAVSGGVDSSVVAALLA---HAVPQSLIAVF-----VDNGLLRTGERKAVEEMFRLK 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTR 134
                + VS  V D  E F + +             G T +                  +
Sbjct: 269 -----LGVSLDVIDASELFLSRLKGAVDPEQKRKIIGATFIEVFSK----------EAAK 313

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G      +     G  + I  +           +    +    +L  PL +
Sbjct: 314 HKNVKFLAQGTLYTDIIESSVAGSSKTI--KSHHN-------VGGLPKDMKFELIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 365 IFKDEVRQLGLELGLS 380


>gi|84490100|ref|YP_448332.1| GMP synthase subunit B [Methanosphaera stadtmanae DSM 3091]
 gi|84373419|gb|ABC57689.1| GMP synthase [glutamine hydrolyzing], subunit B [Methanosphaera
           stadtmanae DSM 3091]
          Length = 308

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 44/197 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD +V++A+SGGVDSSV + L  +  G  +  V                    ++V D  
Sbjct: 20  KDEKVIIALSGGVDSSVASILASKAIGNQLEAVF--------VDHGLLRKNEAKEVEDTF 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSV-T 133
           +  D +N      + ++ F  A           G T     +  R +   KF ++     
Sbjct: 72  K--DRLNFKL--VNAQDEFIEA---------LDGVT---DPEKKREIIGHKFIEVFEREA 115

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GA  L  G      +    + K    +                  +  +  +  PL 
Sbjct: 116 KKSGAKYLLQGTIAPDWIESKGNIKSHHNLT---------------LPEGLVLKIIEPLR 160

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR++   + L 
Sbjct: 161 ELYKDEVREVGTALELP 177


>gi|88801179|ref|ZP_01116722.1| argininosuccinate synthase [Reinekea sp. MED297]
 gi|88776082|gb|EAR07314.1| argininosuccinate synthase [Reinekea sp. MED297]
          Length = 406

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+A  +    YD   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIAKWIAET-YDCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGIKEIYIEDLREEFVRDYVYPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 107 ANETGADAIAHG 118


>gi|317490879|ref|ZP_07949315.1| GMP synthase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920426|gb|EFV41749.1| GMP synthase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 525

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV A LL R  G  +  V      L+L    +     G           
Sbjct: 230 VILGLSGGVDSSVTALLLHRAIGKRLTCVFVDNGLLRLNEGEQVMDMFG----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----S 131
               D   ++      E+RF NA          AG       +  R       +      
Sbjct: 279 ----DKFGLNIIHVKAEDRFLNA---------LAGIN---DPEAKRKTIGRVFVEVFDEE 322

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q     LA G      +        +  + +           +    ++    L  P
Sbjct: 323 ACKQPNVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LKELFKDEVRKIGLELGLP 394


>gi|308274580|emb|CBX31179.1| hypothetical protein N47_E46910 [uncultured Desulfobacterium sp.]
          Length = 343

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 36/235 (15%)

Query: 13  DLDKNPKDMRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++   PK +R  + + SGG+DS + A +L++   +V  +T                    
Sbjct: 11  NMINYPKKVR-ALGLCSGGLDSILAALILRKQQIEVEWITF--------------ETPFF 55

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
               A        +   V +  E +   +  P       G+   PC+DC+  + F    S
Sbjct: 56  SSQKAINASKITGIPLTVKNITEVYMKMLKSP---HCGYGKNMNPCIDCHSLM-FEIAGS 111

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + +Q G D L +G  +  R         R +            Y L   + +++     P
Sbjct: 112 LMKQKGIDFLFSGEVLGQRPMSQTSSSLRYVEKHSGYEG----YILRPLSAKRIAPTI-P 166

Query: 192 ----------LGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
                     L D+  K     +A      I+D       C +   ++   +K +
Sbjct: 167 EKEGLVDRELLLDITGKSRKIQIALAAEFGISDYPAPAGGCLLTDREFSKRLKDL 221


>gi|260752516|ref|YP_003225409.1| argininosuccinate synthase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551879|gb|ACV74825.1| argininosuccinate synthase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 408

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 30/137 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  RVV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR
Sbjct: 4   KVKRVVLAYSGGLDTSVILKWLQEHYGCEVVTFT-------------ADLGQGEELEPAR 50

Query: 78  RVCDTINV-SHYVF--DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFS 127
           +  + + +   ++F  D  E F    + P           Y  G +    +   R +   
Sbjct: 51  KKAEMMGIKPEHIFMDDLREEFVRDFVFPMMRANALYEGQYLLGTSIARPLIAKRQI--- 107

Query: 128 DLLSVTRQLGADVLATG 144
               + RQ+GAD +A G
Sbjct: 108 ---EIARQVGADAVAHG 121


>gi|254479828|ref|ZP_05093076.1| GMP synthase, C-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039390|gb|EEB80049.1| GMP synthase, C-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 525

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 27/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSVVAALL +  G  +  V                   G  V D     
Sbjct: 229 KVLLGLSGGVDSSVVAALLHKAIGDQLTCVF--------VDNGLLRLNEGDHVMD--MFA 278

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
             + V+    D E  F   +                 +  N  +          +L   +
Sbjct: 279 SNMGVTVIRADAESLFLGKLQGEADPEKKRK------IIGNTFI--DIFDEQATKLQNVN 330

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +        +  + +           +         +L  PL ++ K+ 
Sbjct: 331 WLAQGTIYPDVIESAGAKTGKAHVIKSHHN-------VGGLPDDMNLELVEPLRELFKDE 383

Query: 200 VRDLAREMGLD 210
           VR +  E+GL 
Sbjct: 384 VRKIGLELGLP 394


>gi|154509119|ref|ZP_02044761.1| hypothetical protein ACTODO_01638 [Actinomyces odontolyticus ATCC
           17982]
 gi|293189891|ref|ZP_06608597.1| argininosuccinate synthase [Actinomyces odontolyticus F0309]
 gi|153798753|gb|EDN81173.1| hypothetical protein ACTODO_01638 [Actinomyces odontolyticus ATCC
           17982]
 gi|292821194|gb|EFF80140.1| argininosuccinate synthase [Actinomyces odontolyticus F0309]
          Length = 406

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              RVV+A SGG+D+SV    +    G +V+ V                   G+D+   R
Sbjct: 3   SKDRVVLAYSGGLDTSVAIGWIGEQTGREVVAV------------AVDVGQGGEDLEVIR 50

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +       V  YV D  + F     +P   + A  E   P V   +R V    L+   R+
Sbjct: 51  QRALDCGAVEAYVADARDEFAEEYCMPALKANALYEGKYPLVSALSRPVITKHLVKAARE 110

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 111 FGASTVAHG 119


>gi|86359050|ref|YP_470942.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CFN 42]
 gi|86283152|gb|ABC92215.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CFN 42]
          Length = 486

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 52/260 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS------KRKGSCCAGQDVYDA 76
           ++VA+SGG DS+ +  LL           ++     + S             +  +  + 
Sbjct: 25  ILVAISGGSDSTGLLLLLAEA--------MKAAPDLEMSLCAATVDHGLRAGSADEAREV 76

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +C ++ + H                  + +   +     +   R  ++S L      L
Sbjct: 77  AALCASLGIPH----------------MIARWQGEKPKTGIMAAAREARYSLLADAAEAL 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+++ TGH +       DD +    M R M  E+  S    A    +   +  PL    
Sbjct: 121 GANLIVTGHTL-------DDQRETLRM-RGMRTEQLSSGIADAVLFDRRLWILRPLLFAT 172

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------- 248
           +  +R   R  G+   D   ++DI    + +     ++++AG A+  DI  +        
Sbjct: 173 RADIRAFLRARGVRWIDDPSNEDI----RYERVRTRRQLSAGPAMPTDIRAVWEERLTLS 228

Query: 249 --NGQILGRHNGIINYTIGQ 266
              G+ L RH  +    +GQ
Sbjct: 229 SRAGEWLDRHFQLHGGVLGQ 248


>gi|330994458|ref|ZP_08318383.1| GMP synthase [Gluconacetobacter sp. SXCC-1]
 gi|329758458|gb|EGG74977.1| GMP synthase [Gluconacetobacter sp. SXCC-1]
          Length = 494

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDSSV A L+ +  G  +  +              G   AG+     R 
Sbjct: 196 KGRVICGLSGGVDSSVAAVLIHQAIGDQLTCIF----------VDPGILRAGEADEVIRT 245

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             D  N+     D  + F NA   V  P       G   +   +              + 
Sbjct: 246 FRDRFNIHLIHRDASDLFLNALEGVSDPEIKRKTIGRLFIEVFEE----------EAAKL 295

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD LA G      +          +  +           +    ++    L  PL ++
Sbjct: 296 GGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLREL 348

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L REM + 
Sbjct: 349 FKDEVRELGREMDIP 363


>gi|319896560|ref|YP_004134753.1| glutamine-hydrolyzing gmp synthase [Haemophilus influenzae F3031]
 gi|317432062|emb|CBY80411.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae F3031]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|311111904|ref|YP_003983126.1| GMP synthase [Rothia dentocariosa ATCC 17931]
 gi|310943398|gb|ADP39692.1| GMP synthase [Rothia dentocariosa ATCC 17931]
          Length = 530

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 45/205 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV+ A+SGGVDSSV AAL+ +  G  +    +          R G     +     + 
Sbjct: 225 EDRVICALSGGVDSSVAAALVHKAVGDQLTCFFI-----DHGLLRAGEREQVE-----QD 274

Query: 79  VCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAGETPLPCVDCNRTVK 125
              ++ +     D  ERF            +  +I   F  S+   E             
Sbjct: 275 YAASMGIRVITIDESERFLTALAGVSDPEQKRKIIGREFIRSFEQAE------------- 321

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L+    + GA +            V   G       +           +    +   
Sbjct: 322 -RKLIEEAGEEGAQIKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLA 373

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL  + K+ VR + R++G+ 
Sbjct: 374 FELVEPLRTLFKDEVRAIGRQLGVP 398


>gi|145631106|ref|ZP_01786881.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae R3021]
 gi|144983391|gb|EDJ90873.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae R3021]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|150398701|ref|YP_001329168.1| GMP synthase [Sinorhizobium medicae WSM419]
 gi|226739739|sp|A6UFA3|GUAA_SINMW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150030216|gb|ABR62333.1| GMP synthase, large subunit [Sinorhizobium medicae WSM419]
          Length = 520

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSV A L+       +G         + +         +    A  V
Sbjct: 222 DKKVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKDEAANVV 269

Query: 80  C---DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               +  N+     D  +RF      V  P       G   +                  
Sbjct: 270 AMFKEHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIEV-----------FEEEA 318

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +LG AD LA G      +          +  +           +    ++    L  PL
Sbjct: 319 GKLGGADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLVEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L RE+GL 
Sbjct: 372 RELFKDEVRVLGRELGLP 389


>gi|70607352|ref|YP_256222.1| argininosuccinate synthase [Sulfolobus acidocaldarius DSM 639]
 gi|76364088|sp|Q4J8F1|ASSY_SULAC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|68568000|gb|AAY80929.1| arginosuccinate synthase [Sulfolobus acidocaldarius DSM 639]
          Length = 391

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 79/240 (32%), Gaps = 50/240 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++V+A SGG+D++V    L+     DV  VT+ +       + +               
Sbjct: 1   MKIVLAYSGGLDTTVAIRWLRETFNADVTTVTVDVGQKDDFYQIEKRAYIAGA------- 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                + HY  D ++ F    I          E   P      R +    ++ + +++GA
Sbjct: 54  -----IKHYTIDAKKDFAERYISYAIKMNGLYEDIYPLSTALARPLIVEKVVEIAKKIGA 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFP--LGDM 195
           + +A G                           DQ  F  A         +  P  + +M
Sbjct: 109 EAIAHG---------------------STSKGNDQVRFDLAVKALYPEAKIIAPARIWNM 147

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
            ++   + A+  G+ I            +  KY   +     G ++EGDI+    + +  
Sbjct: 148 TRDKEIEYAKSKGIPIKT----------ESSKYS--IDENLWGRSIEGDIISDPSKEVPE 195


>gi|183601736|ref|ZP_02963106.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683732|ref|YP_002470115.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190766|ref|YP_002968160.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196172|ref|YP_002969727.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219342|gb|EDT89983.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621382|gb|ACL29539.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249158|gb|ACS46098.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250726|gb|ACS47665.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178502|gb|ADC85748.1| Argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793755|gb|ADG33290.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 412

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    LK   G DV+ V+L +    ++ +            +A    
Sbjct: 6   RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGESLETIKERALACGAVEA---- 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  Y+ D  + F N   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 62  -------YIVDARDEFANEYCMQALKANAMYEGVYPLVSAISRPLITKHLVRAAHQFGAD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT-TQQQLCDLRFPLGDMKKE 198
            +A G                   C       DQ  F  +  +         P+ D+   
Sbjct: 115 TIAHG-------------------CTGK--GNDQVRFEVSIQSIDPELKAISPIRDLSLT 153

Query: 199 SVRDL--AREMGLDIADKSDS 217
              ++  A E  L I     S
Sbjct: 154 RDVEIAYANEHDLPIVQTEKS 174


>gi|145632465|ref|ZP_01788199.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 3655]
 gi|145635129|ref|ZP_01790834.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittAA]
 gi|144986660|gb|EDJ93212.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 3655]
 gi|145267550|gb|EDK07549.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittAA]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|260582892|ref|ZP_05850677.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae NT127]
 gi|260094105|gb|EEW78008.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae NT127]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|206889695|ref|YP_002248055.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741633|gb|ACI20690.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 510

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 28/202 (13%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA 69
           + ++ K     +VV A+SGGVDS+V A L+ +  G  +  + +     R   + K     
Sbjct: 204 TEEIRKKVGKYKVVCALSGGVDSTVTAVLVHKAIGDALTCIFVDNGLLRAGEREK----V 259

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            + +       +  +++  V D  ERF   +                 +     +K    
Sbjct: 260 EEMLR------NNFHINLKVVDASERFLKRLKGVHDPERKRK------IIGGEFIKI--F 305

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               +++ G   LA G        +  D         P    +          + +L  L
Sbjct: 306 EEEAKKIEGVKFLAQG-------TLYPDVIESISFKGPSATIKSHHNVGGLLKRMKL-KL 357

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR+L +E+G+ 
Sbjct: 358 IEPLRELFKDEVRELGKELGIP 379


>gi|148825494|ref|YP_001290247.1| GMP synthase [Haemophilus influenzae PittEE]
 gi|229846311|ref|ZP_04466419.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 7P49H1]
 gi|226739626|sp|A5UAR3|GUAA_HAEIE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148715654|gb|ABQ97864.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittEE]
 gi|229810404|gb|EEP46122.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 7P49H1]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|72053243|ref|XP_783757.1| PREDICTED: similar to GMPS protein [Strongylocentrotus purpuratus]
 gi|115924043|ref|XP_001183900.1| PREDICTED: similar to GMPS protein [Strongylocentrotus purpuratus]
          Length = 684

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 39/220 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAG 70
           ++ K+  + +V+V +SGGVDS+V AALL++      V+ + +         +R  S    
Sbjct: 219 EIQKSVGNNKVLVLVSGGVDSTVCAALLRKALRADQVVALHI----DNGFMRRNESQLVE 274

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA----------AGETPLPCVDC 120
           + +         + +   V +  + F N                        T  P  + 
Sbjct: 275 ESLS-------RLGLKLKVVNASQSFYNGTTSVPVDKTDPKSPKRITKTLNLTINP--EE 325

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            R +     + +  +     +     ++    +   G  R  +          +     T
Sbjct: 326 KRKIIGDTFMQIADE-----VCVELNLKPEDTILAQGTLRPDLIESASALASSNAEAIKT 380

Query: 181 TQ------QQLC---DLRFPLGDMKKESVRDLAREMGLDI 211
                   +QL     +  PL D  K+ VR L +++GL +
Sbjct: 381 HHNDTELVRQLRAKGRVVEPLKDFHKDEVRALGKDLGLPL 420


>gi|16272185|ref|NP_438394.1| GMP synthase [Haemophilus influenzae Rd KW20]
 gi|260580893|ref|ZP_05848718.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae RdAW]
 gi|1170124|sp|P44335|GUAA_HAEIN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1573186|gb|AAC21891.1| GMP synthase (guaA) [Haemophilus influenzae Rd KW20]
 gi|260092516|gb|EEW76454.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae RdAW]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|24211518|sp|Q8ZU97|ASSY_PYRAE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 397

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 42/201 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D++V    L    G +V  VT+ +      SK +        V       
Sbjct: 5   KIVLAYSGGLDTTVAVKWLSEKFGAEVYTVTVDVGQEDDFSKIEERAYKAGAVQ------ 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                 H+  D +  F    I          E   P      R +  + ++ V R+LGAD
Sbjct: 59  ------HFYIDAKREFAEEYIARAILMNGMYEGVYPLGTALARPLIAAKVVEVARRLGAD 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFP--LGD 194
            +A G                           DQ  F    T + L     +  P  +  
Sbjct: 113 AVAHG---------------------STSKGNDQVRF--DVTVKALAPDLKIIAPARIWG 149

Query: 195 MKKESVRDLAREMGLDIADKS 215
           M +    + A+  GL + ++ 
Sbjct: 150 MTRAEEIEYAKRHGLPVGEEH 170


>gi|309972631|gb|ADO95832.1| GMP synthetase (glutamine-hydrolyzing) [Haemophilus influenzae
           R2846]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|301168875|emb|CBW28468.1| GMP synthetase (glutamine aminotransferase) [Haemophilus influenzae
           10810]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|145637232|ref|ZP_01792894.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittHH]
 gi|145269677|gb|EDK09618.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittHH]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|56551932|ref|YP_162771.1| argininosuccinate synthase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|61211393|sp|Q5NNQ0|ASSY_ZYMMO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56543506|gb|AAV89660.1| Argininosuccinate synthase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 408

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 30/137 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  RVV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR
Sbjct: 4   KVKRVVLAYSGGLDTSVILKWLQEHYGCEVVTFT-------------ADLGQGEELEPAR 50

Query: 78  RVCDTINV-SHYVF--DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFS 127
           +  + + +   ++F  D  E F    + P           Y  G +    +   R +   
Sbjct: 51  KKAEMMGIKPEHIFMDDLREEFVRDFVFPMMRANALYEGQYLLGTSIARPLIAKRQI--- 107

Query: 128 DLLSVTRQLGADVLATG 144
               + RQ+GAD +A G
Sbjct: 108 ---EIARQVGADAVAHG 121


>gi|116491142|ref|YP_810686.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oenococcus oeni PSU-1]
 gi|290890653|ref|ZP_06553723.1| hypothetical protein AWRIB429_1113 [Oenococcus oeni AWRIB429]
 gi|116091867|gb|ABJ57021.1| GMP synthase (glutamine-hydrolyzing) [Oenococcus oeni PSU-1]
 gi|290479628|gb|EFD88282.1| hypothetical protein AWRIB429_1113 [Oenococcus oeni AWRIB429]
          Length = 517

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSVVA LL +  G  +  +     +     K +              
Sbjct: 222 NKKVLLGLSGGVDSSVVAVLLHKAIGRQLTCIF---VDHGLLRKNEAKLVMES------- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
           +     ++    D ++RF +          +  E         R +   + +       +
Sbjct: 272 LAGKFGLNIIKVDAQKRFLDK-----LEGISEPEQK-------RKIIGKEFIETFNDEAK 319

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G      +  G D  +     +           +    ++    L  PL 
Sbjct: 320 KLDGIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPKEMHFKLIEPLR 369

Query: 194 DMKKESVRDLAREMGLDIA 212
            + K+  R L  EM +  A
Sbjct: 370 TLFKDEARKLGEEMQMPHA 388


>gi|304315387|ref|YP_003850534.1| argininosuccinate synthase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588846|gb|ADL59221.1| argininosuccinate synthase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 394

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV   LL+   G +VI            +         ++V    RV 
Sbjct: 3   KVVLAFSGGLDTSVCIKLLEEKYGMEVI------------TACVDVGQPREEVERPARVA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + +    H+  D  E F    I P   + A  E  PL        +     + V    GA
Sbjct: 51  EELGNYKHHTVDAREEFAENYIFPAIKANAVYEGYPLSTALARPLIAEKI-VEVAESEGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 SAIAHG 115


>gi|166712367|ref|ZP_02243574.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 521

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 226 VILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF-AE 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----- 136
            + V     +  +R+              G   +   +  R +  +  + +  +      
Sbjct: 276 HMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVEIFDEESNTLA 323

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +        +  + +           +    +     L  PL ++ 
Sbjct: 324 NAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMTLGLVEPLRELF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 377 KDEVRRLGVELGLP 390


>gi|154148437|ref|YP_001406222.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter hominis ATCC BAA-381]
 gi|226738411|sp|A7I131|GUAA_CAMHC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|153804446|gb|ABS51453.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) (gmps) [Campylobacter hominis ATCC
           BAA-381]
          Length = 511

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 72/219 (32%), Gaps = 51/219 (23%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKA 60
              ++   ++ K     RV+ A+SGGVDSSVVAALL    K    ++I V +        
Sbjct: 200 NFAKIKCEEIKKQVGKDRVLCAVSGGVDSSVVAALLAHCIKE---NLIVVFVDN------ 250

Query: 61  SKRKGSCCAGQDVYDARRVCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
                         +A++V       + V     D  E F              G T   
Sbjct: 251 --------GLLRTDEAKQVEQTFKLKLGVELISIDASELFLGR---------LKGIT--- 290

Query: 117 CVDCNRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
             +  R +     + V     ++      LA G      +     G  + I  +      
Sbjct: 291 DPEEKRKIIGKTFIEVFEREAKKHQNVKYLAQGTLYTDIIESSVVGSSKTI--KSHHN-- 346

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +    +     L  PL ++ K+ VR L  E+GL 
Sbjct: 347 -----VGGLPKDMKFKLIEPLKEIFKDEVRKLGTELGLS 380


>gi|116250083|ref|YP_765921.1| GMP synthase [Rhizobium leguminosarum bv. viciae 3841]
 gi|226739710|sp|Q1MMJ7|GUAA_RHIL3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115254731|emb|CAK05805.1| putative GMP synthase [glutamine hydrolysing] [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 520

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+ A+SGGVDSSV A L+       +G         + +         +    A  V
Sbjct: 222 DKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKDEAAGVV 269

Query: 80  C---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +  N+     D  +RF                 P         +         R+L
Sbjct: 270 AMFREHYNLHLLHVDAADRF--------IGELEGVSDPETKRKIIGRLFIETFEEEARKL 321

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD L  G      +          +  +           +    ++    L  PL ++
Sbjct: 322 GGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L RE+GL 
Sbjct: 375 FKDEVRALGRELGLP 389


>gi|328950432|ref|YP_004367767.1| GMP synthase (glutamine-hydrolyzing) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450756|gb|AEB11657.1| GMP synthase (glutamine-hydrolyzing) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 504

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 73/215 (33%), Gaps = 41/215 (19%)

Query: 4   SEATRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +    L SL  ++ +   + RV++A+SGGVDSS +A LL R G D + V           
Sbjct: 192 TPEHTLESLVREVRERVGEERVLLAVSGGVDSSTLALLLARAGVDHVAVF--------VD 243

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCV 118
                     +V  A +    + V+    D  ERF      V  P A     G   +   
Sbjct: 244 HGLLRLGERAEVEHALKP---LGVNLVTVDASERFLAALEGVTDPEAKRKIIGREFVEV- 299

Query: 119 DCNRTVKFSDLLSVTRQLG-ADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
                          R+LG    LA G  +        G      +       L +D   
Sbjct: 300 ----------FKEKARELGPFTFLAQGTLYPDVIESAGGAGAANIKSHHNVGGLPKD--- 346

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                  + L     P   + K+ VR+LA  +GL 
Sbjct: 347 ----LGFELLE----PFRYLFKDEVRELALLLGLP 373


>gi|319775905|ref|YP_004138393.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae F3047]
 gi|329123760|ref|ZP_08252320.1| GMP synthase [Haemophilus aegyptius ATCC 11116]
 gi|317450496|emb|CBY86713.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae F3047]
 gi|327469959|gb|EGF15424.1| GMP synthase [Haemophilus aegyptius ATCC 11116]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|50122130|ref|YP_051297.1| GMP synthase [Pectobacterium atrosepticum SCRI1043]
 gi|81644335|sp|Q6D288|GUAA_ERWCT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49612656|emb|CAG76106.1| GMP synthase [glutamine-hydrolyzing] [Pectobacterium atrosepticum
           SCRI1043]
          Length = 525

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G           
Sbjct: 230 VILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEADQVLEMFGD---------- 279

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----S 131
                  N    +              F +  A  + P       R +     +      
Sbjct: 280 -------NFGLNIVHVAAE------DRFLNELAGEDEPE----AKRKIIGRVFVEVFDEE 322

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q     LA G      +        +  + +           +    ++    L  P
Sbjct: 323 ANKQAEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 376 LKELFKDEVRKIGLELGLP 394


>gi|323697897|ref|ZP_08109809.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. ND132]
 gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
          Length = 336

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLK------RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV+V +SGGVDS   A LL       R  + V  V L           +    +  D   
Sbjct: 42  RVLVGLSGGVDS--TALLLVLHYLSSRADFTVGAVHL---------DHQLRPESADDATF 90

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR +C+ + +   V           +   A     G       +  R  +++    +   
Sbjct: 91  ARALCERLGIDCEV-------ETRDVARLAEERGVG-----LEEAGREARYALYAELRES 138

Query: 136 LGADVLATGHYI 147
            G D +A GH +
Sbjct: 139 GGWDFIALGHQL 150


>gi|260495481|ref|ZP_05815607.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_33]
 gi|260197018|gb|EEW94539.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_33]
          Length = 512

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 215 NKKVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF             AG T     +  R +   + + V     
Sbjct: 264 VYAKNFDMNIKCINAEERFLTK---------LAGVT---DPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +          +D          + L   
Sbjct: 312 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLP-KD-------LKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|227534132|ref|ZP_03964181.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188239|gb|EEI68306.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 44/202 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVV  LL +     IG  L          RKG          A +V
Sbjct: 222 DKRVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKGE---------ADQV 268

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            +++     ++    + ++RF              G T     +  R +   D +     
Sbjct: 269 MESLKGKFGLNIIKVNAKDRFLGD---------LKGVT---DPEKKRKIIGRDFIEVFNE 316

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G D LA G      +  G D  +     +           +    +     L  
Sbjct: 317 EAAKLNGIDFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGLPEDLKFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLDIA 212
           PL  + K+ VR+L  ++G+  A
Sbjct: 367 PLNKLFKDEVRELGEKLGMPHA 388


>gi|161869294|ref|YP_001598461.1| GMP synthase [Neisseria meningitidis 053442]
 gi|226739647|sp|A9M138|GUAA_NEIM0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|161594847|gb|ABX72507.1| GMP synthetase (glutamine-hydrolysing) [Neisseria meningitidis
           053442]
          Length = 521

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTQKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|148270235|ref|YP_001244695.1| GMP synthase [Thermotoga petrophila RKU-1]
 gi|226739760|sp|A5ILP6|GUAA_THEP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|147735779|gb|ABQ47119.1| GMP synthase (glutamine-hydrolyzing) [Thermotoga petrophila RKU-1]
          Length = 501

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 37/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + + ++A+SGGVDSSV A L+ R  G +++ V                     
Sbjct: 198 HIKETIGNKKAILALSGGVDSSVAAVLVHRAIGKNLVCVF-----------VDHGLLRKN 246

Query: 72  DVYDARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----F 126
           +  +  RV  +  +++  V D  +RF              G T     +  R +      
Sbjct: 247 EREEVERVFKEHFDMNLVVVDARKRFLEK---------LRGVT---DPEKKRKIIGEEFI 294

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  ++   + L  G      +     GK    +    +        +    ++   
Sbjct: 295 RVFEEEAKKHDVEFLVQGTIYSDVIESAASGKTTAKIKSHHN--------VGGLPEKMNL 346

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL D+ K+ VR + + +G+ 
Sbjct: 347 KLVEPLRDLFKDEVRKVGKYLGIP 370


>gi|320120350|gb|EFE28381.2| PP-loop family protein [Filifactor alocis ATCC 35896]
          Length = 276

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKG 65
           +D +   ++ R+ +A+SGG DS V+A L++         ++ + +++    +   SK   
Sbjct: 35  IDFEMIQQNDRIAIAISGGKDSLVMAKLMQELYRHSDIPFEPVFISM----NPGFSKENE 90

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           S             C  +++  +       F++ +     S         PC  C   ++
Sbjct: 91  SSLIAN--------CKAMDIPVHF------FQSDIFEVTTSIAKE----NPCYMC-ARMR 131

Query: 126 FSDLLSVTRQLGADVLATGHYIR 148
              L     +LG + LA GH+  
Sbjct: 132 RGALYGKAEELGCNKLALGHHFN 154


>gi|242399643|ref|YP_002995068.1| Predicted ATPase of the PP-loop superfamily [Thermococcus sibiricus
           MM 739]
 gi|242266037|gb|ACS90719.1| Predicted ATPase of the PP-loop superfamily [Thermococcus sibiricus
           MM 739]
          Length = 275

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 23/126 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + + A SGG DS+V   L K   Y V           +A        A + + +A+R+ +
Sbjct: 56  KAIAAFSGGKDSTVALYLAKEK-YKV---------DVEAVMIDHGFMAKEAIENAKRITE 105

Query: 82  TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            ++V   V   DY   FR A++          +   PC  C+       L     + G  
Sbjct: 106 HLDVPLTVLRYDYSNIFRGALL----------KVKSPCKKCSSRT-MGGLKEYALKKGVK 154

Query: 140 VLATGH 145
            + TGH
Sbjct: 155 FIITGH 160


>gi|119504389|ref|ZP_01626469.1| Argininosuccinate synthase [marine gamma proteobacterium HTCC2080]
 gi|119459897|gb|EAW40992.1| Argininosuccinate synthase [marine gamma proteobacterium HTCC2080]
          Length = 405

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR    
Sbjct: 5   KVVLAYSGGLDTSVIVRWLQET-YDCEVVTF-----------TADIGQGEEVEPARAKAQ 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 53  ALGIEEIYIDDLREEFVRDFVYPMFRANTIYEGEYLLGTSIARPLIAKR------LVEIA 106

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 107 NETGADAISHG 117


>gi|238020666|ref|ZP_04601092.1| hypothetical protein GCWU000324_00555 [Kingella oralis ATCC 51147]
 gi|237867646|gb|EEP68652.1| hypothetical protein GCWU000324_00555 [Kingella oralis ATCC 51147]
          Length = 549

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AAL+ R  G  +  V     +       +G           + 
Sbjct: 245 NDEVILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLDEGKNVM-------QM 294

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL 136
               + V     D   +F             AG T     +  R +  ++ + V    + 
Sbjct: 295 FAQNLGVKVVHVDASAQFMAK---------LAGVT---DPEQKRKIIGAEFIEVFDAEEK 342

Query: 137 G---ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +       ++    +           +    +     L  PL 
Sbjct: 343 KLTQAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLR 395

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR+L   +GL 
Sbjct: 396 DLFKDEVRELGVALGLP 412


>gi|222099726|ref|YP_002534294.1| GMP synthase [Thermotoga neapolitana DSM 4359]
 gi|221572116|gb|ACM22928.1| GMP synthase [Thermotoga neapolitana DSM 4359]
          Length = 503

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 37/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + + ++A+SGGVDSSV A L+ R  G +++ V                     
Sbjct: 200 HIKETIGNKKAILALSGGVDSSVAAVLVHRAIGKNLVCVF-----------VDHGLLRKN 248

Query: 72  DVYDARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----F 126
           +  +  RV  +  +++  V D  +RF              G T     +  R +      
Sbjct: 249 EREEVERVFKEHFDMNLVVVDARKRFLEK---------LRGVT---DPEKKRKIIGEEFI 296

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  ++   + L  G      +     GK    +    +        +    ++   
Sbjct: 297 RVFEEEAKKHDVEFLVQGTIYSDVIESAASGKTTAKIKSHHN--------VGGLPEKMNL 348

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL D+ K+ VR + + +G+ 
Sbjct: 349 KLVEPLRDLFKDEVRKVGKYLGIP 372


>gi|148827363|ref|YP_001292116.1| GMP synthase [Haemophilus influenzae PittGG]
 gi|226739627|sp|A5UG27|GUAA_HAEIG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148718605|gb|ABQ99732.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittGG]
          Length = 523

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 225 NDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 277 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 317

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 318 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|257075864|ref|ZP_05570225.1| ATPase of the PP-loop superamily [Ferroplasma acidarmanus fer1]
          Length = 311

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 80/259 (30%), Gaps = 52/259 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            K  R+ VA+SGG DSS    LL      R   ++   T                     
Sbjct: 46  NKKTRISVAISGGKDSSATLYLLHKILSERRNLELTAFT---------VDEGIEGYRSTG 96

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLS 131
           +  AR++C+ + + H V  Y+E +               +   + C  C    +   L++
Sbjct: 97  LEKARKLCENLGIEHNVISYKENY-----GYSLDEIMKIDKKTISCSHCGPMRR--QLMN 149

Query: 132 VTRQL-GADVLATG----HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              +   +D +A G     Y +S L     G   R            SY       +   
Sbjct: 150 RISEYTESDYVALGINLDDYAQSILMNVAKGDVARYARMAP-----HSYTREGLVPR--- 201

Query: 187 DLRFPLGDMKKESVRDLAREMGLDI---ADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
               PL  + ++ V   A   G+D         S      Q+  + D+++++       G
Sbjct: 202 --ILPLRKIPEKEVVLYAILNGIDFDSSWCPYYSM----AQRNSFRDIIEKLEKET--PG 253

Query: 244 ------DIVHLNGQILGRH 256
                        + +  H
Sbjct: 254 TKFAIVKFFDETRKSIREH 272


>gi|21243022|ref|NP_642604.1| GMP synthase [Xanthomonas axonopodis pv. citri str. 306]
 gi|24211748|sp|Q8PK88|GUAA_XANAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21108531|gb|AAM37140.1| glutamine amidotransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 521

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNAADRYFAK---------LEG---VRDPEAKRKIIGNLFVEIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|15644564|ref|NP_229617.1| GMP synthase [Thermotoga maritima MSB8]
 gi|170288796|ref|YP_001739034.1| GMP synthase, large subunit [Thermotoga sp. RQ2]
 gi|281412430|ref|YP_003346509.1| GMP synthase, large subunit [Thermotoga naphthophila RKU-10]
 gi|13627216|sp|Q9X2E0|GUAA_THEMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739761|sp|B1LAK3|GUAA_THESQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|4982402|gb|AAD36883.1|AE001819_6 GMP synthase [Thermotoga maritima MSB8]
 gi|170176299|gb|ACB09351.1| GMP synthase, large subunit [Thermotoga sp. RQ2]
 gi|281373533|gb|ADA67095.1| GMP synthase, large subunit [Thermotoga naphthophila RKU-10]
          Length = 501

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 37/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + + ++A+SGGVDSSV A L+ R  G +++ V                     
Sbjct: 198 HIKETIGNKKAILALSGGVDSSVAAVLVHRAIGKNLVCVF-----------VDHGLLRKN 246

Query: 72  DVYDARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----F 126
           +  +  RV  +  +++  V D  +RF              G T     +  R +      
Sbjct: 247 EREEVERVFKEHFDMNLVVVDARKRFLEK---------LRGVT---DPEKKRKIIGEEFI 294

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  ++   + L  G      +     GK    +    +        +    ++   
Sbjct: 295 RVFEEEAKKHDVEFLVQGTIYSDVIESAASGKTTAKIKSHHN--------VGGLPEKMNL 346

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL D+ K+ VR + + +G+ 
Sbjct: 347 KLVEPLRDLFKDEVRKVGKYLGIP 370


>gi|146296665|ref|YP_001180436.1| ExsB family protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410241|gb|ABP67245.1| ExsB family protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 285

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 47/196 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +A SGGVDS+     L +  YDV+G      +   A     S    +++ DA++    
Sbjct: 26  VAIAYSGGVDST----FLVKVAYDVLG------DKALAVTATSSTYPKRELEDAKKFIKE 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I   H +            +        G    P   C  C + + F  +  V +  G +
Sbjct: 76  IGAKHII------------IESEELEIEGFNKNPVDRCYYCKKEL-FEKIWKVAKAHGIE 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A G          D    R  M    +L           +  ++         + KE 
Sbjct: 123 YVADG------SNFDDLNDFRPGMKAACELN--------VVSPLKVAK-------LTKED 161

Query: 200 VRDLAREMGLDIADKS 215
           +R L++ +GL    K 
Sbjct: 162 IRKLSKYLGLPTWQKP 177


>gi|153812066|ref|ZP_01964734.1| hypothetical protein RUMOBE_02462 [Ruminococcus obeum ATCC 29174]
 gi|149831965|gb|EDM87051.1| hypothetical protein RUMOBE_02462 [Ruminococcus obeum ATCC 29174]
          Length = 261

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 85/241 (35%), Gaps = 57/241 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQ-DVYDA 76
           V VA S GVDS+    LLK      G D VI VT              SC   + ++ +A
Sbjct: 4   VAVAFSSGVDST---FLLKAALEALGKDKVIAVT------------ASSCSFPERELKEA 48

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              C    V H +   EE      I  F            C  C   + F  +  + ++ 
Sbjct: 49  TEFCKENGVRHIICKSEELD----IDGF-----RQNPKNRCYLCKHEL-FEKIWQIAKEN 98

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + +A G        + D+G  R  +    +L            Q +L           
Sbjct: 99  SMNAVAEG------SNMDDNGDYRPGLIAVKELG-----VSSPLRQAEL----------Y 137

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
           KE +R+L++EMGL   DK      C   +  Y + +     G+  + + + L+   +G H
Sbjct: 138 KEEIRELSKEMGLPTWDKQSF--ACLSSRFVYGETISEEKLGMVDQAEQLLLD---MGFH 192

Query: 257 N 257
            
Sbjct: 193 Q 193


>gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
 gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
          Length = 1313

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 32/190 (16%)

Query: 23   VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            + V++SGGVDS V+A +LK  GYDV+ + +   N  ++++         D  D       
Sbjct: 863  IAVSLSGGVDSMVLAYILKHQGYDVVTLHIDYKNRPESTEE-------ADFVD------- 908

Query: 83   INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVTRQLGADVL 141
                    D+  R           +   G TP       +R +++       ++ G   +
Sbjct: 909  --------DWSVRHGMKFERCTVDAIRRGVTPREQYEIESRKIRYGFYKKSGQKHGFPAV 960

Query: 142  ATG-HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
              G H+   +  +  +  R   +     +++            ++     P     K  V
Sbjct: 961  LLGHHHGDVQENIITNLMRGANLLSVNGMDK-----RGVVEGVRIWRPMLP---HNKVDV 1012

Query: 201  RDLAREMGLD 210
             D A   G+ 
Sbjct: 1013 LDFAHTYGVP 1022


>gi|15835060|ref|NP_296819.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlamydia muridarum Nigg]
 gi|270285228|ref|ZP_06194622.1| GMP synthase [Chlamydia muridarum Nigg]
 gi|270289247|ref|ZP_06195549.1| GMP synthase [Chlamydia muridarum Weiss]
 gi|301336623|ref|ZP_07224825.1| GMP synthase [Chlamydia muridarum MopnTet14]
 gi|13627143|sp|Q9PKM3|GUAA_CHLMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7190487|gb|AAF39296.1| GMP synthase [Chlamydia muridarum Nigg]
          Length = 512

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 52/209 (24%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K  +  RV++ +SGGVDSSV+A LL             L +               +V 
Sbjct: 212 EKVGETERVLLGLSGGVDSSVLAVLLHNA----------LGDRLSCVFVDTGLLRKNEVE 261

Query: 75  DARRVCDTINVSHYVFDYEERF------------RNAVIVPFASSYAAGETPLPCVDC-N 121
           + ++   ++ +   V D  E+F            +  VI           +    V    
Sbjct: 262 EVKQQFSSLGLEILVVDASEKFFHDLSGIEDPEQKRKVIGAAFIEVFDEASKNLDVQWLA 321

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +   +SD++   +   A  +   H+                              +    
Sbjct: 322 QGTIYSDVIESAKSCDATQVIKSHHN-----------------------------VGGLP 352

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           ++    L  PL  + K+ VR L + +GL 
Sbjct: 353 EKLNLKLLEPLRFLFKDEVRALGKVLGLP 381


>gi|116512291|ref|YP_809507.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123320327|sp|Q02Y87|GUAA_LACLS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116107945|gb|ABJ73085.1| GMP synthase (glutamine-hydrolyzing) [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 513

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D +V++ +SGGVDSSVV  LL+R     IG         + +         + 
Sbjct: 211 DVREKVGDKKVLLGLSGGVDSSVVGVLLQRA----IG--------DQLTSIFVDHGFLRK 258

Query: 73  VYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              A +V +T+     ++    D ++RF + ++                V          
Sbjct: 259 GE-ADQVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVY--------V 309

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +L G D LA G      +  G D  +     +           +    +     
Sbjct: 310 FDDEANKLEGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQ 359

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR L  ++G+ 
Sbjct: 360 LIEPLNTLFKDEVRALGTQLGMP 382


>gi|297182186|gb|ADI18357.1| argininosuccinate synthase [uncultured actinobacterium
           HF4000_04C13]
          Length = 419

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 29/151 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           + E + ++S + ++ P D +VV+A SGG+D+SV+   L+ + G +V+  T          
Sbjct: 1   MMEGSEMSSDETNRTPVD-KVVLAYSGGLDTSVILRWLEEEYGCEVVTFT---------- 49

Query: 62  KRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGET 113
                   G+++  AR   + + V   Y+ D  E F    + P           Y  G +
Sbjct: 50  ---ADLGQGEELEPARAKAEAMGVSEIYIEDLREEFVRDYVFPMFRANALYEGEYLLGTS 106

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
               +   R      L+ +  + GAD ++ G
Sbjct: 107 IARPLIAKR------LVEIADETGADAISHG 131


>gi|78048041|ref|YP_364216.1| GMP synthase [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|91206839|sp|Q3BSP7|GUAA_XANC5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78036471|emb|CAJ24162.1| glutamine amidotransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 521

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVEIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|294497090|ref|YP_003560790.1| GMP synthase [Bacillus megaterium QM B1551]
 gi|294347027|gb|ADE67356.1| GMP synthase (glutamine-hydrolyzing) [Bacillus megaterium QM B1551]
          Length = 506

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG  L          RKG          A  V
Sbjct: 211 DRKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHGLLRKGE---------AESV 257

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLLS 131
            +T         + E F   VI       F         P     +  N  +  F D   
Sbjct: 258 MET---------FSEGFNMNVIKIDAKDRFLEKLNGVSDPEQKRKIIGNEFIYVFDD--E 306

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  G D LA G        + + G       +           +    +     L  P
Sbjct: 307 AAKLKGFDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 356

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 357 LNTLFKDEVRALGSELGIP 375


>gi|293394889|ref|ZP_06639179.1| GMP synthase [Serratia odorifera DSM 4582]
 gi|291422640|gb|EFE95879.1| GMP synthase [Serratia odorifera DSM 4582]
          Length = 525

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 69/200 (34%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 EDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++      EERF +A   V  P A     G   +          F +  
Sbjct: 279 -------DHFGLNIVHVPAEERFLSALAGVDEPEAKRKIIGRVFVEV--------FDE-- 321

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +Q     LA G      +        +  + +           +    ++    L  
Sbjct: 322 EACKQSEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 375 PLKELFKDEVRKIGLELGLP 394


>gi|260773378|ref|ZP_05882294.1| GMP synthase [glutamine-hydrolyzing] [Vibrio metschnikovii CIP
           69.14]
 gi|260612517|gb|EEX37720.1| GMP synthase [glutamine-hydrolyzing] [Vibrio metschnikovii CIP
           69.14]
          Length = 517

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGERLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +   ++    D EERF         ++      P         V         
Sbjct: 271 -------NKFGLNIIKVDAEERF--------LAALEGKADPEEKRKTIGHVFVDVFDEQA 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|158522690|ref|YP_001530560.1| ExsB family protein [Desulfococcus oleovorans Hxd3]
 gi|158511516|gb|ABW68483.1| ExsB family protein [Desulfococcus oleovorans Hxd3]
          Length = 322

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 40/192 (20%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC--DTI 83
           A+SGGVDSSVV  L    G+  +G  L+ Y       R+G          AR V     +
Sbjct: 37  ALSGGVDSSVVTVL----GHRALGKNLKTYFIDNGIMREGEP--------ARVVATFKKM 84

Query: 84  NVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            +   V D    F      V  P     A  +T    +       F  L+  ++   A  
Sbjct: 85  GIPVEVIDASRAFFAALKGVTDPEEKREAITQTFYKKI-------FGKLVVKSK---ATY 134

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           L  G  +          KR+  +     +D ++   Y            +  PL +++K+
Sbjct: 135 LLQGTILTDVDETVAGIKRQHNVFAQLGIDPQKAFGY-----------KILEPLIELRKD 183

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 184 GVRKVGRGLGLP 195


>gi|116495445|ref|YP_807179.1| GMP synthase [Lactobacillus casei ATCC 334]
 gi|191638913|ref|YP_001988079.1| GMP synthase [Lactobacillus casei BL23]
 gi|239629831|ref|ZP_04672862.1| GMP synthase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066953|ref|YP_003788976.1| GMP synthase [Lactobacillus casei str. Zhang]
 gi|122263143|sp|Q036Y5|GUAA_LACC3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739637|sp|B3W952|GUAA_LACCB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116105595|gb|ABJ70737.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus casei ATCC 334]
 gi|190713215|emb|CAQ67221.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Lactobacillus casei BL23]
 gi|239527443|gb|EEQ66444.1| GMP synthase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439360|gb|ADK19126.1| GMP synthase [Lactobacillus casei str. Zhang]
 gi|327382966|gb|AEA54442.1| GMP synthase, large subunit [Lactobacillus casei LC2W]
 gi|327386150|gb|AEA57624.1| GMP synthase, large subunit [Lactobacillus casei BD-II]
          Length = 517

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 44/202 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++ +SGGVDSSVV  LL +     IG  L          RKG          A +V
Sbjct: 222 DKRVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKGE---------ADQV 268

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            +++     ++    + ++RF              G T     +  R +   D +     
Sbjct: 269 MESLKGKFGLNIIKVNAKDRFLGD---------LKGVT---DPEKKRKIIGRDFIEVFNE 316

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G D LA G      +  G D  +     +           +    +     L  
Sbjct: 317 EAAKLNGIDFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGLPEDLKFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLDIA 212
           PL  + K+ VR+L  ++G+  A
Sbjct: 367 PLNKLFKDEVRELGEKLGMPHA 388


>gi|296450964|ref|ZP_06892711.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296879070|ref|ZP_06903066.1| PP-loop family protein [Clostridium difficile NAP07]
 gi|296260182|gb|EFH07030.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296429943|gb|EFH15794.1| PP-loop family protein [Clostridium difficile NAP07]
          Length = 272

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 65/205 (31%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDA 76
           VVVA SGGVDS+    LLK      G +V+ VT+   +++SR+             + +A
Sbjct: 25  VVVAYSGGVDSN---FLLKVAKDTLGENVVAVTIHAMMHSSRE-------------IEEA 68

Query: 77  RRVCDTINVSHYVFDYE----ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++      V H + + E    + F+   I               C  C + + FS +  V
Sbjct: 69  KQYTQNFGVKHIILNIENFDLKEFKENGIDR-------------CYHCKKYI-FSKIKEV 114

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +  G        + D G  R  +    +L                  +  PL
Sbjct: 115 AKEHNIKYIVDG------TNIDDLGDYRPGLKALSELG-----------------VISPL 151

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            D  +KKE +R L++ +GL   +K 
Sbjct: 152 KDSGLKKEEIRSLSKILGLKTFNKP 176


>gi|295702455|ref|YP_003595530.1| GMP synthase [Bacillus megaterium DSM 319]
 gi|294800114|gb|ADF37180.1| GMP synthase (glutamine-hydrolyzing) [Bacillus megaterium DSM 319]
          Length = 509

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG  L          RKG          A  V
Sbjct: 214 DRKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHGLLRKGE---------AESV 260

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLLS 131
            +T         + E F   VI       F         P     +  N  +  F D   
Sbjct: 261 MET---------FSEGFNMNVIKIDAKDRFLEKLNGVSDPEQKRKIIGNEFIYVFDD--E 309

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  G D LA G        + + G       +           +    +     L  P
Sbjct: 310 AAKLKGFDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 359

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 360 LNTLFKDEVRALGSELGIP 378


>gi|255655798|ref|ZP_05401207.1| hypothetical protein CdifQCD-2_08869 [Clostridium difficile
           QCD-23m63]
          Length = 267

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 65/205 (31%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDA 76
           VVVA SGGVDS+    LLK      G +V+ VT+   +++SR+             + +A
Sbjct: 20  VVVAYSGGVDSN---FLLKVAKDTLGENVVAVTIHAMMHSSRE-------------IEEA 63

Query: 77  RRVCDTINVSHYVFDYE----ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++      V H + + E    + F+   I               C  C + + FS +  V
Sbjct: 64  KQYTQNFGVKHIILNIENFDLKEFKENGIDR-------------CYHCKKYI-FSKIKEV 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +  G        + D G  R  +    +L                  +  PL
Sbjct: 110 AKEHNIKYIVDG------TNIDDLGDYRPGLKALSELG-----------------VISPL 146

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            D  +KKE +R L++ +GL   +K 
Sbjct: 147 KDSGLKKEEIRSLSKILGLKTFNKP 171


>gi|33239490|ref|NP_874432.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|44887938|sp|Q7VEH5|GUAA_PROMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33237015|gb|AAP99084.1| GMP synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 528

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 29/204 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +     RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      +
Sbjct: 217 DVQEKVGKKRVLLALSGGVDSSTLAFLLKKA----IGNQLTCMFIDQGFMRKGEPEFLME 272

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
            +D        +++    +  +RF +                +   +  R +        
Sbjct: 273 FFD-----KKFHINVEYINARDRFLDK------------LQGVSDPEKKRKIIGTEFIRV 315

Query: 129 LLSVTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               + +LG  D LA G  Y       G +   +      + ++   +  +    +    
Sbjct: 316 FEEESLRLGPFDYLAQGTLYPDVIESSGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQF 373

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR + R +GL 
Sbjct: 374 KLVEPLRTLFKDEVRKVGRSLGLP 397


>gi|169350791|ref|ZP_02867729.1| hypothetical protein CLOSPI_01564 [Clostridium spiroforme DSM
          1552]
 gi|169292499|gb|EDS74632.1| hypothetical protein CLOSPI_01564 [Clostridium spiroforme DSM
          1552]
          Length = 44

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDG 44
           RVV+ +SGGVDS+V A LLK+ G
Sbjct: 13 KRVVLGLSGGVDSAVAAYLLKKQG 36


>gi|116749554|ref|YP_846241.1| GMP synthase [Syntrophobacter fumaroxidans MPOB]
 gi|116698618|gb|ABK17806.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 518

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 26/192 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA LL    ++ IG  L          RKG           +RV
Sbjct: 221 DDQVICALSGGVDSSVVAVLL----HNAIGSRLHCIFVNNGLLRKGE------AESVQRV 270

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D  +++    D  + F   +                           +L     +  A
Sbjct: 271 FRDHFSINLIYADASDLFLERLKDVTDPERKRK-------------IIGNLFVELFEREA 317

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L +  Y+       D  +          ++   +  +    ++    L  PL ++ K+
Sbjct: 318 GRLESVKYLAQGTLYPDVIESVSFKGPSATIKTHHN--VGGLPERMNLKLIEPLRELFKD 375

Query: 199 SVRDLAREMGLD 210
            VR L RE+GL 
Sbjct: 376 EVRMLGRELGLP 387


>gi|241207252|ref|YP_002978348.1| GMP synthase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861142|gb|ACS58809.1| GMP synthase, large subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 520

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+ A+SGGVDSSV A L+       +G         + +         +    A  V
Sbjct: 222 DKRVICALSGGVDSSVAALLIHEA----VG--------DQLTCILVDHGLMRKDEAAGVV 269

Query: 80  C---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +  N+     D  +RF                 P         +         ++L
Sbjct: 270 AMFREHYNLHLLHVDAADRF--------IGELEGVSDPETKRKIIGRLFIETFEEEAKKL 321

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD L  G      +          +  +           +    ++    L  PL ++
Sbjct: 322 GGADFLGQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMQLVEPLREL 374

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L RE+GL 
Sbjct: 375 FKDEVRALGRELGLP 389


>gi|329962135|ref|ZP_08300146.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
 gi|328530783|gb|EGF57641.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
          Length = 435

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 46/201 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V++A+SGGVDSSVVAALL +  G  ++ V      ++   S    +  G        
Sbjct: 140 DRKVLLALSGGVDSSVVAALLLKAIGDKLVCVHVNHGLMRKGESEAVVEIFG-------- 191

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                    +  +    D  +RF      V  P              +     ++     
Sbjct: 192 -------KELKANLIYVDATDRFLSKLENVADP---EQKRK------IIGGEFIRV--FE 233

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              R+L G D L  G        + + G +   M +           +    +    +L 
Sbjct: 234 EEARKLDGIDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELV 283

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR    E+GL 
Sbjct: 284 EPLRQLFKDEVRACGVELGLP 304


>gi|187780206|ref|ZP_02996679.1| hypothetical protein CLOSPO_03802 [Clostridium sporogenes ATCC
           15579]
 gi|187773831|gb|EDU37633.1| hypothetical protein CLOSPO_03802 [Clostridium sporogenes ATCC
           15579]
          Length = 266

 Score = 58.6 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 59/219 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V VA SGGVDS+    LLK      G +VI +T                    ++ +A+ 
Sbjct: 18  VAVAFSGGVDST---LLLKAAKEALGDNVISIT-----------VVSPYIPKWEIEEAKE 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQ 135
           + + I +  Y  +           P            P   C  C + V FS +  + ++
Sbjct: 64  LANNIGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKE 108

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G   +  G  +       DD K  R   R +                 L +        
Sbjct: 109 KGVKYIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------ 147

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
            KE +R L++E+GL   +K      C + +  Y   +K 
Sbjct: 148 NKEKIRTLSKELGLQTWNKP--AYACLLSRIPYNQEIKE 184


>gi|282882183|ref|ZP_06290822.1| GMP synthase (glutamine-hydrolyzing) [Peptoniphilus lacrimalis
           315-B]
 gi|281297948|gb|EFA90405.1| GMP synthase (glutamine-hydrolyzing) [Peptoniphilus lacrimalis
           315-B]
          Length = 504

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 39/210 (18%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKG 65
            ++   D+ K   + +V++A+SGGVDSSV AAL+ +  G ++  +     +     K +G
Sbjct: 197 AKIAIEDIRKKVGNGKVLLALSGGVDSSVTAALVSKAIGENLTCIF---VDHGLMRKNEG 253

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCV-DCN 121
                    +         +     D EERF N +             GE  +    +  
Sbjct: 254 D--------EVEEAFKNSGMKFIRIDAEERFLNRLKKVTDPERKRKIIGEEFIRVFEEEG 305

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           R +K             D LA G      +  G  G   +               +    
Sbjct: 306 RKIK-----------SVDYLAQGTIYPDVIESGLGGAVIKSHHN-----------VGGLP 343

Query: 182 QQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                 +L  PL  + K+ VR L RE+GL 
Sbjct: 344 DVVDFKELIEPLRMLFKDEVRKLGRELGLA 373


>gi|322491706|emb|CBZ26978.1| putative GMP synthase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 656

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 71/223 (31%), Gaps = 54/223 (24%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++   D +V+   SGGVDS+V A LL +  G + V+ +      ++L  S          
Sbjct: 217 ERTSGDQKVLCLASGGVDSTVCAVLLLKALGPERVVCIHIDHGFMRLSES---------- 266

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRN--------------------AVIVPFASS 107
                V +A  V     V  ++   +E F                       V  P    
Sbjct: 267 ---VQVLEALNVA---GVRVHLVQAQEDFAQASTEMTAKGSRAAYTTNKLSEVTDPEEKR 320

Query: 108 YAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM 167
              G T +    C+R +K         QL  + L           +    K        +
Sbjct: 321 NIIGNTFMTV--CDRVIK-------ELQLDVENLLLAQGTLRPDLIESGSKYASANADAI 371

Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               + +  +    +     +  PL D  K+ VR+L   +G+ 
Sbjct: 372 KTHHNDTAVVRLLREA--GRIIEPLCDYHKDEVRELGARLGIP 412


>gi|310817148|ref|YP_003965112.1| argininosuccinate synthase [Ketogulonicigenium vulgare Y25]
 gi|308755883|gb|ADO43812.1| argininosuccinate synthase [Ketogulonicigenium vulgare Y25]
          Length = 412

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 18/135 (13%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            + P   +VV+A SGG+D+S++   L+   G +V+  T                  G+++
Sbjct: 3   AQKPAPKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEEL 49

Query: 74  YDARRVCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDL 129
             AR+    + +     ++ D  E F    + P   + A  E          R +    L
Sbjct: 50  EPARQKALLLGIKEENIHIVDLREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKKL 109

Query: 130 LSVTRQLGADVLATG 144
           + + +  GAD +A G
Sbjct: 110 VEIAQATGADAVAHG 124


>gi|237733085|ref|ZP_04563566.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383887|gb|EEO33978.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 515

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 28/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         D + 
Sbjct: 216 NGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVEAVFGPDGQ- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + +ER+   +         A       +     ++        +++G 
Sbjct: 272 ----YDLNFIRVNAQERYYEKLKG--VEEPEAKRK----IIGEEFIRV--FEEEAKKIGT 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G      +  G  G+    + +           +          ++  PL D+ 
Sbjct: 320 VDFLVQGTIYPDVVESGLGGE--SAVIKSHHN-------VGGLPDAVDFKEIIEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+G+ 
Sbjct: 371 KDEVRKVGLELGIP 384


>gi|168334597|ref|ZP_02692750.1| hypothetical protein Epulo_06348 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 267

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 50/199 (25%)

Query: 23  VVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V +A SGGVDSS    V A   K+ G  V  VT            + S     D+  A +
Sbjct: 16  VAIAFSGGVDSSLLLKVAAEEGKKLGVLVHAVTF-----------ETSLHPKADLEIAAK 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V + +   H V   +E  +  +I               C  C R + F +L+  T +   
Sbjct: 65  VAEEVGAIHKVIFIDELTKAEIIENPIDR---------CYHCKRFL-FEELIDYTAKHNL 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-- 196
                G  +       DD  + R   R +               ++L  +  PL  +K  
Sbjct: 115 KYAVDGTNL-------DDLSQYRPGIRAL---------------EELG-IISPLAKLKID 151

Query: 197 KESVRDLAREMGLDIADKS 215
           K +VR  A++MGL + ++ 
Sbjct: 152 KATVRKYAQQMGLSVYNRP 170


>gi|317968376|ref|ZP_07969766.1| GMP synthase [Synechococcus sp. CB0205]
          Length = 531

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 29/204 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      D
Sbjct: 220 DVRRQVGDKRVLLALSGGVDSSTLAFLLHKA----IGDQLTCMFIDQGFMRKGEPEFLMD 275

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
            +D        ++     +  ERF N           AG T     +  R +        
Sbjct: 276 FFD-----KKFHIRVEYINARERFINK---------LAGVT---DPEEKRKLIGTEFIRV 318

Query: 129 LLSVTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               +++LG  D LA G  Y       G +   +      + ++   +  +    +    
Sbjct: 319 FEEESKRLGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQF 376

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR + R +GL 
Sbjct: 377 KLVEPLRRLFKDEVRKVGRTLGLP 400


>gi|253989307|ref|YP_003040663.1| GMP synthase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780757|emb|CAQ83919.1| GMP synthase [glutamine-hydrolyzing] [Photorhabdus asymbiotica]
          Length = 525

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 EDHVILGLSGGVDSSVTALLLHRAIGKRLTCVFVDN--------------GLLRLNEAEQ 272

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133
           V         ++      E+RF         ++ A    P         V          
Sbjct: 273 VMEMFAGKFGLNIVHVPAEDRF--------LAALAGINDPEEKRKTIGRVFVEVFDEEAS 324

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +Q   + LA G      +        +  + +           +    ++    L  PL 
Sbjct: 325 KQTQVNWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEEMKLGLVEPLK 377

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +   +GL 
Sbjct: 378 ELFKDEVRKIGLALGLP 394


>gi|238854516|ref|ZP_04644854.1| GMP synthase [glutamine-hydrolyzing] [Lactobacillus jensenii 269-3]
 gi|260664801|ref|ZP_05865652.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934090|ref|ZP_06339369.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
 gi|313472639|ref|ZP_07813128.1| GMP synthase [Lactobacillus jensenii 1153]
 gi|238832869|gb|EEQ25168.1| GMP synthase [glutamine-hydrolyzing] [Lactobacillus jensenii 269-3]
 gi|239529403|gb|EEQ68404.1| GMP synthase [Lactobacillus jensenii 1153]
 gi|260561284|gb|EEX27257.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301837|gb|EFA94102.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
          Length = 516

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +   L    + K   D +V++ +SGGVDSSV A LL +  G  +  +     +    
Sbjct: 203 TMDDFIDLEVAKIRKQVGDGKVILGLSGGVDSSVTATLLHKAIGNQLTAIF---VDHGLL 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +          D       + V+    D ++RF + +                 +  
Sbjct: 260 RKDEAKQVMAALNRD-------LGVNIIKVDAKKRFLDKLKGVSEPEQKRK------IIG 306

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
              +         ++L G   LA G        V + G +     +           +  
Sbjct: 307 KEFI--EVFNEEAKKLNGVKFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGG 354

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 355 LPKDLGFELVEPLRKLFKDEVRELGEKLGIP 385


>gi|108757976|ref|YP_633262.1| argininosuccinate synthase [Myxococcus xanthus DK 1622]
 gi|108461856|gb|ABF87041.1| argininosuccinate synthase [Myxococcus xanthus DK 1622]
          Length = 396

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 112/348 (32%), Gaps = 65/348 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              VV+A SGG+D++  A  L+  GYDV  VT                   + +     +
Sbjct: 4   KKNVVLAFSGGLDTAFCAVYLREQGYDVTTVT-----------VDTGGFPPEQLERIAAL 52

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +  V H   D  E      +    +         P  V   R  + ++++ V R+ G
Sbjct: 53  SKQLGAVEHVTVDARETLFQGYLRYLIAGNVLRGQVYPLSVSAERACQAAEVVRVAREKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRR-----IMC---RPMDLERDQSYFLFATTQQQLCDLR 189
              LA G        V  D   R       +    R + L R Q       T      + 
Sbjct: 113 TQALAHGSTGAGNDQVRFDVAFRSLAPELELLTPIRTLSLSRQQE-----LTYLAERGVH 167

Query: 190 FP--LGDMKKESVRDLAREMGLDI--ADKSDS----QDICFVQQGKYFDVVKRINAGIAL 241
            P  LG      V +     G  +  A+  DS     +  F       D+  R       
Sbjct: 168 MPPKLGSYS---VNEGM--WGTSVGGAETLDSWKALPEAAFPGGELSQDLKPRPLTVSFE 222

Query: 242 EGDIVHLNGQILGRHN-----GIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRV 290
           +G  V L+G+ LG          +  T G  RG+ +        G     V  +  ++ +
Sbjct: 223 KGVPVALDGEKLGPVKLVEALNALGRTYGIGRGVHLGDTILGIKGR----VGFEAPAAHL 278

Query: 291 IVGPRESLEVHRIYLREINW-----------LGDGLFEDAVVDGFKCF 327
           +V     LE   +  +++ W           L +G F D +V   + F
Sbjct: 279 LVTAHRELEKLVLSGKQLFWKESMGNLYGSLLHEGHFFDPLVKDLEAF 326


>gi|21231622|ref|NP_637539.1| GMP synthase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768256|ref|YP_243018.1| GMP synthase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991393|ref|YP_001903403.1| GMP synthase [Xanthomonas campestris pv. campestris str. B100]
 gi|24211745|sp|Q8P8Q6|GUAA_XANCP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81305769|sp|Q4UVC5|GUAA_XANC8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739766|sp|B0RSB6|GUAA_XANCB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21113314|gb|AAM41463.1| glutamine amidotransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573588|gb|AAY48998.1| glutamine amidotransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733153|emb|CAP51351.1| GMP synthase (glutamine-hydrolysing) [Xanthomonas campestris pv.
           campestris]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVDIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|313672102|ref|YP_004050213.1| nh(3)-dependent nad(+) synthetase [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938858|gb|ADR18050.1| NH(3)-dependent NAD(+) synthetase [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 270

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 40/187 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS++ A L  +     +G      +   A        + + + DA+ V D  
Sbjct: 29  VVGLSGGIDSALSAVLAVKA----VG-----SDKLFAFALPYKTSSRESLDDAKLVADEF 79

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++  V +         + PF  +                      L++  +L    +  
Sbjct: 80  GINLQVIEITP-----YVDPFLET----------------------LNLDDKLRMGNV-- 110

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
               R R+    D   +          + +    + T    L     P+GD+ K  V +L
Sbjct: 111 --MARMRMVTLFDMSSKYRALVLGTSNKTELLLGYGTWYGDLASAINPIGDLYKTQVWEL 168

Query: 204 AREMGLD 210
           ++ +G+ 
Sbjct: 169 SKYLGIP 175


>gi|302671339|ref|YP_003831299.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
 gi|302395812|gb|ADL34717.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
          Length = 286

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 64/195 (32%), Gaps = 47/195 (24%)

Query: 24  VVAMSGGVDSS---VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V  SGGVDSS   VVA       +DV+G      +   A          +++ +A   C
Sbjct: 29  AVGFSGGVDSSLLMVVA-------HDVLG------DKAIAVTCTAVFVPDRELREAHDFC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +         +    V  P +        P  C  C   + FS++  +  + G + 
Sbjct: 76  AERGIR--------QLTCKV-DPLSKENVRHNPPDRCYHCKNMI-FSEIKRIAAENGIEY 125

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A G          DD    R   R ++             Q +L           K+ +
Sbjct: 126 VAEG-------SNMDDLGDYRPGLRAVEELE----ITSPLRQAEL----------TKDDI 164

Query: 201 RDLAREMGLDIADKS 215
           R ++R +GL    K 
Sbjct: 165 RQISRALGLPTWSKP 179


>gi|289665725|ref|ZP_06487306.1| argininosuccinate synthase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 412

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+ + +T   S       KD  +V+A SGG+D+S     L+  GY V  V          
Sbjct: 1   MMSAASTTPESPITTPGTKD--IVLAFSGGLDTSFCIPYLQERGYAVHTVF--------- 49

Query: 61  SKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                     ++     +    +   SH   D         + PF  +    +   P + 
Sbjct: 50  --ADTGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLV 107

Query: 120 CNRTVKFSDLLSVTRQLGADVLATG 144
            +R +     L    +LG  ++A G
Sbjct: 108 SDRYLIVDAALKRAEELGTRIIAHG 132


>gi|260655135|ref|ZP_05860623.1| PP-loop family protein [Jonquetella anthropi E3_33 E1]
 gi|260630057|gb|EEX48251.1| PP-loop family protein [Jonquetella anthropi E3_33 E1]
          Length = 271

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 72/200 (36%), Gaps = 49/200 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R VV++SGGVDSS V ALL   G    G    L+    A   +       +     ++C
Sbjct: 25  KRAVVSLSGGVDSSCVLALL--AGLMPEG---SLW----AVNFRSFFHFPDEQERCVKMC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               V        E   + V             P  C  C ++++   L +  ++LGA +
Sbjct: 76  SDFGVPLLSLPGPELTSDEV---------RQNVPRRCALC-KSLRLERLQAEAQELGAVI 125

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL--RF-PL--GDM 195
           +              DG          D  +D++        + L      F PL  G +
Sbjct: 126 V--------------DGTN-------ADDLKDKT----RLGNEALARCTNLFSPLAEGGL 160

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  VR+L+R + +  AD+ 
Sbjct: 161 TKARVRELSRRLEIPWADEP 180


>gi|238763559|ref|ZP_04624520.1| GMP synthase [glutamine-hydrolyzing] [Yersinia kristensenii ATCC
           33638]
 gi|238698191|gb|EEP90947.1| GMP synthase [glutamine-hydrolyzing] [Yersinia kristensenii ATCC
           33638]
          Length = 538

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   +  V++ +SGGVDSSV A LL R  G  +  V +                    
Sbjct: 234 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDN--------------GLLR 279

Query: 73  VYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FS 127
           + +A +V +         +              F S+ A  + P       R +    F 
Sbjct: 280 LNEADQVLEMFGDKFGLNIVHVAAE------DRFLSALAGVDEPE----AKRKIIGRVFV 329

Query: 128 DLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L      +Q     LA G      +        +  + +           +    ++  
Sbjct: 330 ELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMK 382

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 383 LGLVEPLKELFKDEVRKIGLELGLP 407


>gi|224475544|ref|YP_002633150.1| GMP synthase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254800115|sp|B9DLM7|GUAA_STACT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222420151|emb|CAL26965.1| putative GMP synthase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 513

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q      
Sbjct: 218 DRKVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF----- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  N++    + ++RF + +                 V       F D    ++  G
Sbjct: 269 --GEGFNMNIIRVNAKDRFMDKLKGVSDPEQKRKIIGNEFVYV-----FDD--EASKLEG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        V + G +     +           +    +    +L  P+  + K
Sbjct: 320 VDFLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMQFELIEPINTLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 370 DEVRALGIELGIP 382


>gi|300858377|ref|YP_003783360.1| argininosuccinate synthase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685831|gb|ADK28753.1| Argininosuccinate synthase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206090|gb|ADL10432.1| Putative argininosuccinate synthase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330643|gb|ADL20837.1| argininosuccinate synthase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276327|gb|ADO26226.1| argininosuccinate synthase [Corynebacterium pseudotuberculosis I19]
          Length = 399

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G +V+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGEVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F N   +P   +        P V   +R +    L+   +Q G 
Sbjct: 52  LDCGAVESIVIDAKDEFANDYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAAKQHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             ++ G                    +  D  R +  F     + ++     P  D    
Sbjct: 112 THVSHG-----------------CTGKGNDQVRFEVGFRNLAPELEI---IAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I     S
Sbjct: 152 RDKAIAFAEEINLPIEQSKKS 172


>gi|242372831|ref|ZP_04818405.1| PP-loop superfamily ATP-binding protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242349450|gb|EES41051.1| PP-loop superfamily ATP-binding protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 278

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 41/205 (20%)

Query: 12  LDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + LD   K+MR VV+A SGGVDSS+V   LK+   DV+G         K    K      
Sbjct: 12  MKLDHLLKEMRSVVIAFSGGVDSSLV---LKKA-IDVLGA-----EHVKPVVVKSELFRN 62

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           ++   A  +  ++ V     +  E   + ++     S+            ++ + +  L 
Sbjct: 63  EEFDQAIELGRSLGVDVLETEMAELEDDNIVKNTPDSW----------YFSKRLLYGKLD 112

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +   LG + +  G        + DD +  R   +  D      + + +  Q+       
Sbjct: 113 EIKEGLGFNYVLDG-------MIMDDLEDFRPGLKARD-----EFGVRSVLQEA------ 154

Query: 191 PLGDMKKESVRDLAREMGLDIADKS 215
              ++ K  +R+L+++  L + +K 
Sbjct: 155 ---NLYKSEIRELSKQHDLPVWNKP 176


>gi|226950720|ref|YP_002805811.1| GMP synthase [Clostridium botulinum A2 str. Kyoto]
 gi|254800092|sp|C1FLV2|GUAA_CLOBJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226844589|gb|ACO87255.1| GMP synthase [Clostridium botulinum A2 str. Kyoto]
          Length = 510

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKAIGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D  +++    + ++RF   +                 +     ++        ++LG 
Sbjct: 267 --DQFDMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGN 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|57242393|ref|ZP_00370331.1| GMP synthase [Campylobacter upsaliensis RM3195]
 gi|57016678|gb|EAL53461.1| GMP synthase [Campylobacter upsaliensis RM3195]
          Length = 517

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 71/205 (34%), Gaps = 39/205 (19%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +K     +V+ A+SGGVDSSVVA LL R  G ++I V            RKG   A + +
Sbjct: 212 EKVLGGDKVLCAVSGGVDSSVVAILLYRAIGENLIPVF-----VDTGLLRKGEREAVEAM 266

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDC-----NRTVK 125
           +      + + V   V D  E F   +             GET +   +      N   +
Sbjct: 267 FK-----ENLKVPLIVADARELFLRRLKGVTEPEQKRKIIGETFIEVFEAEAKKHNTKGE 321

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L        A        I S    G     +                +    +   
Sbjct: 322 IKFL--------AQGTLYPDVIESVSVKGPSKTIKSHHN------------VGGLPEWMK 361

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL ++ K+ VR L RE+G+ 
Sbjct: 362 FELIEPLRELFKDEVRALGRELGMP 386


>gi|218531106|ref|YP_002421922.1| GMP synthase [Methylobacterium chloromethanicum CM4]
 gi|218523409|gb|ACK83994.1| GMP synthase, large subunit [Methylobacterium chloromethanicum CM4]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V+  +SGGVDSSV A L+    G  +  V      ++L    +                
Sbjct: 225 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRLGEGDEV--------------- 269

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            R   D  N+       ++ F      V  P       G      V      K       
Sbjct: 270 VRLFRDHYNIPLIHVQAQDLFIGALEGVDDPEVKRKTIGRLF-IDVFEAEAGKIG----- 323

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GA  LA G      +          +  +           +    ++    L  PL
Sbjct: 324 ----GAAFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMKLVEPL 372

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L +E+GL 
Sbjct: 373 RELFKDEVRLLGKELGLP 390


>gi|323139064|ref|ZP_08074123.1| GMP synthase, large subunit [Methylocystis sp. ATCC 49242]
 gi|322395724|gb|EFX98266.1| GMP synthase, large subunit [Methylocystis sp. ATCC 49242]
          Length = 534

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 36/200 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D RV+  +SGGVDS+V A L+    G  +  V      L+L  + +              
Sbjct: 231 DGRVLCGLSGGVDSAVAAVLIHEAIGDRLTCVFVDHGLLRLGEAEEVVSLFR-------- 282

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D  N+  +  +  + F      V  P       G                   
Sbjct: 283 -------DHYNIPLHHVEAADLFLGALEGVEDPEVKRKTIGRLF-----------IETFE 324

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  +++  D      ++       D  +       P    +   + +    ++    L  
Sbjct: 325 AEAKKIAQDGRGAPQFLAQGTLYPDVIESVSFTGGPSVTIKSH-HNVGGLPERMNMALVE 383

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L RE+GL 
Sbjct: 384 PLRELFKDEVRALGRELGLP 403


>gi|298484345|ref|ZP_07002506.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22]
 gi|298269499|gb|EFI11099.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGG DS V    +L   GY         +   + S R        D    R+
Sbjct: 19  DAKVLIALSGGADS-VALLCILHTAGYHCEAAHCNFHLRGEESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  +  D+             + YA  +     +   R +++       ++  A
Sbjct: 70  LCKRTGIHLHTIDFN-----------TTQYAKEKQISIEMAA-RELRYDWFEKTRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVIAVAHH 125


>gi|295087951|emb|CBK69474.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Bacteroides xylanisolvens
           XB1A]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGG DS V    +L   GY         +   + S R        D    R+
Sbjct: 19  DAKVLIALSGGADS-VALLCILHTAGYHCEAAHCNFHLRGEESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  +  D+             + YA  +     +   R +++       ++  A
Sbjct: 70  LCKRTGIHLHTIDFN-----------TTQYAKEKQISIEMAA-RELRYDWFEKTRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVIAVAHH 125


>gi|237723186|ref|ZP_04553667.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447708|gb|EEO53499.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGG DS V    +L   GY         +   + S R        D    R+
Sbjct: 19  DAKVLIALSGGADS-VALLCILHTAGYHCEAAHCNFHLRGEESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  +  D+             + YA  +     +   R +++       ++  A
Sbjct: 70  LCKRTGIHLHTIDFN-----------TTQYAKEKQISIEMAA-RELRYDWFEKTRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVIAVAHH 125


>gi|237712941|ref|ZP_04543422.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409616|ref|ZP_06086156.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643471|ref|ZP_06721284.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a]
 gi|294807915|ref|ZP_06766696.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b]
 gi|229447060|gb|EEO52851.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352469|gb|EEZ01569.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641190|gb|EFF59395.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a]
 gi|294444913|gb|EFG13599.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGG DS V    +L   GY         +   + S R        D    R+
Sbjct: 19  DAKVLIALSGGADS-VALLCILHTAGYHCEAAHCNFHLRGEESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  +  D+             + YA  +     +   R +++       ++  A
Sbjct: 70  LCKRTGIHLHTIDFN-----------TTQYAKEKQISIEMAA-RELRYDWFEKTRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVIAVAHH 125


>gi|23098171|ref|NP_691637.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanobacillus iheyensis HTE831]
 gi|44887959|sp|Q8CXK8|GUAA_OCEIH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|22776396|dbj|BAC12672.1| GMP synthase (glutamine-hydrolyzing) [Oceanobacillus iheyensis
           HTE831]
          Length = 511

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 46/201 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSVVAAL+ +     IG  +T    +     K +G         D  
Sbjct: 216 DRKVLCALSGGVDSSVVAALIHKA----IGDQLTCIFVDHGLLRKNEGD--------DVM 263

Query: 78  RVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLL 130
           +V            + E F+  +I       F         P     +  N  +      
Sbjct: 264 KV------------FAEDFQMNIIKVDAKDRFLFKLEGVSDPELKRKIIGNEFIYV--FD 309

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L   D LA G      +  G D  +     +           +    +     L 
Sbjct: 310 DEASKLKDIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFTLI 359

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR+L  ++G+ 
Sbjct: 360 EPLNTLFKDEVRELGSQLGVP 380


>gi|126657829|ref|ZP_01728982.1| ExsB [Cyanothece sp. CCY0110]
 gi|126620769|gb|EAZ91485.1| ExsB [Cyanothece sp. CCY0110]
          Length = 231

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+  AA+    GY+VI ++L+                 +++  A+ +   +
Sbjct: 8  VVLLSGGLDSATSAAIAIDQGYEVIALSLRY-----------GQRHQRELNAAQTIAQAL 56

Query: 84 NV-SHYVFD 91
          N+  HY+ D
Sbjct: 57 NISKHYIID 65


>gi|304413362|ref|ZP_07394835.1| GMP synthase [Candidatus Regiella insecticola LSR1]
 gi|304284205|gb|EFL92598.1| GMP synthase [Candidatus Regiella insecticola LSR1]
          Length = 543

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 35/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            L +   +  V++ +SGGVDSSV A LL++  G  +  V +                   
Sbjct: 238 QLREKIGEDEVILGLSGGVDSSVTALLLQKAIGDKLTCVFVDN--------------GLL 283

Query: 72  DVYDARRVC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            + +A  V     D + +     +  +RF         +  A  E P         V   
Sbjct: 284 RLNEATEVLKMFRDNLGLKIIHVEAADRF--------LNELAGVEEPEAKRKIIGRVFVE 335

Query: 128 DLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 ++L  A  LA G      +        +    +           +    +    
Sbjct: 336 IFDEEAKKLSNAKWLAQGTIYPDVIESAAAVTGKAHAIKSHHN-------VGGLPKDMKL 388

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR +   +GL 
Sbjct: 389 GLVEPLKELFKDEVRRIGLALGLP 412


>gi|300856861|ref|YP_003781845.1| GMP synthase [Clostridium ljungdahlii DSM 13528]
 gi|300436976|gb|ADK16743.1| GMP synthase [Clostridium ljungdahlii DSM 13528]
          Length = 510

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 34/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ AMSGGVDSSV A L+ +  G  +  +     +     K +G             
Sbjct: 215 NKKVICAMSGGVDSSVAAVLVHKAVGKQLTCIF---VDHGLLRKDEGDQVEHVFK----- 266

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +++    + ++RF      V  P       GE                     R+
Sbjct: 267 --KQFDMNFIRVNAKDRFLGKLEGVSDPEKKRKIIGEEF-----------IRVFEEEARK 313

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG   ++          V + G       +           +    +     L  PL ++
Sbjct: 314 LGD--ISFLVQGTIYPDVVESGLGTSATIKSHHN-------VGGLPEDMDFKLIEPLREL 364

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+G+ 
Sbjct: 365 FKDEVRAVGEELGIP 379


>gi|119361287|sp|Q11D10|ASSY_MESSB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 408

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  ARR 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARRK 54

Query: 80  CDTINV-SHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + + +   ++ D  E F R+ V   F ++     T L      R +    L+ +  + G
Sbjct: 55  AEMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSIARPLIAKRLVEIAAETG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|228474151|ref|ZP_04058888.1| GMP synthase [Staphylococcus hominis SK119]
 gi|314935155|ref|ZP_07842508.1| GMP synthase [Staphylococcus hominis subsp. hominis C80]
 gi|228271846|gb|EEK13183.1| GMP synthase [Staphylococcus hominis SK119]
 gi|313656490|gb|EFS20229.1| GMP synthase [Staphylococcus hominis subsp. hominis C80]
          Length = 513

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 66/191 (34%), Gaps = 30/191 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+ AMSGGVDSSVVA LL +     IG  +T    +     K +G     Q        
Sbjct: 220 KVLCAMSGGVDSSVVAVLLHKA----IGDQLTCIFVDHGLLRKGEGDMVMEQF------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +  +++    + +ERF   +                 V       F D     +    D
Sbjct: 269 GEGFDMNIIRVNAKERFMEKLKGVSDPEKKRKIIGNEFVYV-----FDD--EAAKLTDVD 321

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G        V + G +     +           +    +    +L  P+  + K+ 
Sbjct: 322 FLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMEFELIEPINTLFKDE 371

Query: 200 VRDLAREMGLD 210
           VR L  E+G+ 
Sbjct: 372 VRALGIELGIP 382


>gi|289582495|ref|YP_003480961.1| NAD+ synthetase [Natrialba magadii ATCC 43099]
 gi|289532048|gb|ADD06399.1| NAD+ synthetase [Natrialba magadii ATCC 43099]
          Length = 264

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 67/189 (35%), Gaps = 42/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G + V G+ L                  +++ DA RV  
Sbjct: 35  VLGLSGGIDSTLTAYLAADALGAENVHGLVL-----------PAVVSGDENMSDAERVAL 83

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   D  E     ++    S+Y   E     V  N   +   +L+       + L
Sbjct: 84  DLGLPH---DLIEI--EPIVDSLLSAYPEAEGDREAVG-NARARVRAVLNYLVANHENRL 137

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   RS   VG                    YF         C    P+G++ K  VR
Sbjct: 138 VLGTGNRSEAAVG--------------------YFTKYGDGAVDCH---PIGNLYKAQVR 174

Query: 202 DLAREMGLD 210
            LAR +G+ 
Sbjct: 175 QLARHVGVP 183


>gi|119175480|ref|XP_001239961.1| GMP synthase [Coccidioides immitis RS]
          Length = 539

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 66/204 (32%), Gaps = 40/204 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VC 80
            V+ A+SGGVDS+V + L+K      IG      +   A      C    +       + 
Sbjct: 232 HVLGAVSGGVDSTVASKLMKEA----IG------DRFHAVLVNNGCMRLNECEQVHETLG 281

Query: 81  DTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNRTVKFS 127
             + ++  V D  ++F +A   V  P          F   + A    +     +   K  
Sbjct: 282 KHLGINLTVVDASKQFLDALKGVTDPERKRKIIGGKFIDVFEAEALKIEAGVKHTGAKVK 341

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L  T             I S  + G     +         +R Q              
Sbjct: 342 WFLQGTL--------YPDVIESLSFKGPSATIKTHHNVGGLPKRMQEGAG--------LK 385

Query: 188 LRFPLGDMKKESVRDLAREMGLDI 211
           L  PL ++ K+ VR L RE+G+  
Sbjct: 386 LIEPLRELFKDEVRQLGRELGIHN 409


>gi|114288|sp|P13257|ASSY_METBA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|149818|gb|AAA72677.1| argininosuccinate synthetase [Methanosarcina barkeri]
          Length = 396

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 65/264 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V +A SGG+D+SV   +LK   GYD V+ +          S   G         DA+ 
Sbjct: 3   KKVALAYSGGLDTSVCIPILKEKYGYDEVVTI----------SVDVGQPEEEIKRADAK- 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I+  HY  D +E F    + P   +  + E  +      R +    ++   R+ GA
Sbjct: 52  -AEKISNKHYTIDAKEEFVKDYVFPLIKANGSYEGYVMGTSIARPLIAKKVVEAARKEGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G                   C       DQ  F     Q  +  +  P+ +M   
Sbjct: 111 VALAHG-------------------CTGK--GNDQLRFEAVFRQTDMD-VIAPMREMNLT 148

Query: 199 SVRDL--AREMGLDIA------------------DKSDSQDICFVQQGKYFDVVKRINAG 238
              ++  A+E G+ +                   +    +D  FV   + F+        
Sbjct: 149 REWEIDYAKEHGIPVEVTKSKPWSVDENIWSRSIEGGRLEDPSFVPPEEIFEWTTSPEKA 208

Query: 239 IALE---------GDIVHLNGQIL 253
                        G  V L+G+ +
Sbjct: 209 PEQPRVVDIGFEAGVPVSLDGEKM 232


>gi|296116400|ref|ZP_06835014.1| GMP synthase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976993|gb|EFG83757.1| GMP synthase [Gluconacetobacter hansenii ATCC 23769]
          Length = 532

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+  +SGGVDSSV A L+ +  G  +  +            R G   A + +   R 
Sbjct: 234 KGRVICGLSGGVDSSVAAVLIHQAIGEQLTCIF-----VDPGILRAGE--ADEVIKTFR- 285

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             D  N+     D  + F      V  P       G   +   +              + 
Sbjct: 286 --DRFNIHLIHRDASDLFLSALEGVSDPEIKRKTIGRLFIEVFEE----------EAAKL 333

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA+ LA G      +          +  +           +    ++    L  PL ++
Sbjct: 334 GGAEFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMKMKLVEPLREL 386

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L RE+ + 
Sbjct: 387 FKDEVRALGRELDIP 401


>gi|257790697|ref|YP_003181303.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
 gi|257474594|gb|ACV54914.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
          Length = 535

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSVVAAL  +  G  +  V +        +         ++V D     
Sbjct: 223 RVILGLSGGVDSSVVAALCAKAIGKQLTCVFI--------NHGLLRKNEPEEVEDV--FT 272

Query: 81  DTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +V       E+R+      V+ P       G              + +  +V  +L 
Sbjct: 273 KQFDVDFVHVHAEDRYAALLADVVEPEQKRRIIGSQF-----------WKEFFAVAEELA 321

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS---YFLFATTQQQLCDLRFPLGD 194
                  +  +  +Y        R         +       F           L  PL  
Sbjct: 322 EGGRPVKYLAQGTIYPDIIESGARKTGGKASTIKSHHNLIPFPDGVHFD----LIEPLDH 377

Query: 195 MKKESVRDLAREMGLD 210
             K+ VR L   +GL 
Sbjct: 378 FFKDEVRALGTALGLP 393


>gi|154174972|ref|YP_001408055.1| NAD+ synthetase [Campylobacter curvus 525.92]
 gi|112802897|gb|EAU00241.1| NAD+ synthetase [Campylobacter curvus 525.92]
          Length = 250

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 72/199 (36%), Gaps = 48/199 (24%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-QLYNSRKASKRKGSCCAGQD 72
           + K  K   +++ +SGG+DS+VVA L            + +  +   A     +  + ++
Sbjct: 19  ITKKSKSKNLLIGVSGGIDSAVVATLCAAA--------MPKNTH---ALIMPTNASSTKN 67

Query: 73  VYDARRVCDTINVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           + DA  +C  + ++  + + +   + F ++ I         G         +  V+ S L
Sbjct: 68  IDDALNLCKKLGLNFKILNIQAILDAFGDS-IGEDIDKLRKGN-------LSARVRMSLL 119

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +  + A            L VG   K   ++              + T    L    
Sbjct: 120 YDYSASINA------------LVVGTSNKSELML-------------GYGTIFGDLACAI 154

Query: 190 FPLGDMKKESVRDLAREMG 208
            P+G++ K  + + A+ +G
Sbjct: 155 NPIGELYKTEIFEFAKYLG 173


>gi|297621115|ref|YP_003709252.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU
           86-1044]
 gi|297376416|gb|ADI38246.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU
           86-1044]
          Length = 244

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           D  + VA+SGG DS  +  +L      G          + +      + SC AG D+   
Sbjct: 32  DQNIAVALSGGKDSLTLLFMLAAISGKG------FPDFHLAAVHVTGEFSCGAGVDLPYL 85

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +C  +N+   V                 S    ET L C  C+R  +   L     QL
Sbjct: 86  SAICSKLNIPFVV---------------KESNQKLET-LECYSCSRERR-KLLFEAAEQL 128

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL----CDLRFPL 192
           GA  +A GH+               ++ +          F     +  +      +  PL
Sbjct: 129 GAKTIAFGHH----RDDNAQTILMNMLHKGE--------FCGNLPKLHMIDYGKTIIRPL 176

Query: 193 GDMKKESVRDLAREMGLD 210
             + +E +R  A + G  
Sbjct: 177 TYVSEEEIRRFAEQQGFS 194


>gi|222529193|ref|YP_002573075.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456040|gb|ACM60302.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 276

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 66/197 (33%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            +A SGGVDS+     L +  YDV+G      +   A     S    +++ DA      +
Sbjct: 27  AIAYSGGVDST----FLVKVAYDVLG------DRVIAVTATSSTYPKRELNDAITFIKQV 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
              H V + EE                G    P   C  C + + F  +  V +  G + 
Sbjct: 77  GAKHIVIESEELEIE------------GFNKNPVDRCYYCKKEL-FEKIWKVAKAHGIEY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +A G          D    R  M    +L                  +  PL    + KE
Sbjct: 124 VADG------SNFDDLNDFRPGMKAACELN-----------------VVSPLKVAGLTKE 160

Query: 199 SVRDLAREMGLDIADKS 215
            +R L++E+ L   DK 
Sbjct: 161 DIRKLSKELELPTWDKP 177


>gi|120404283|ref|YP_954112.1| argininosuccinate synthase [Mycobacterium vanbaalenii PYR-1]
 gi|166220997|sp|A1TAA6|ASSY_MYCVP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119957101|gb|ABM14106.1| argininosuccinate synthase [Mycobacterium vanbaalenii PYR-1]
          Length = 400

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 67/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGSEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   S A      P V   +R +    L+   R+ G 
Sbjct: 52  LDCGAVEAVVVDARDEFAEQYCLPAIKSNALYMDRYPLVSALSRPLIVKHLVDAAREHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            V+A G                    +  D  R +  F           +  P+ D    
Sbjct: 112 GVVAHG-----------------CTGKGNDQVRFEVGFASLAPDL---KVLAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENAIPINVTKRS 172


>gi|301156025|emb|CBW15496.1| GMP synthetase (glutamine aminotransferase) [Haemophilus
           parainfluenzae T3T1]
          Length = 519

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 273 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 313

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 314 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 367 VEPLRELFKDEVRKIGLALGLP 388


>gi|116623070|ref|YP_825226.1| ExsB family protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116226232|gb|ABJ84941.1| ExsB family protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 281

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 66/210 (31%), Gaps = 47/210 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA SGG DS+ +A   ++    V+G       +  A     +        DA     
Sbjct: 29  RVLVAFSGGTDSAYLAWAARQ----VLG------ENAVAMTADSASLPESHKRDAEDFVR 78

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              + H   +    F N         Y     P  C  C   + F+ L  V +  G   +
Sbjct: 79  RFGIVHEYIE-THEFDN-------PEYVR-NDPNRCFHCKDEL-FTRLAEVGQARGYRHI 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      + V D G  R       +  +                   PL D  + K  
Sbjct: 129 VYG------VNVDDLGDYRP----GQNAAKKHEVAA-------------PLADAGLTKAE 165

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYF 229
           +R+L+R   L   D+  S   C   +  Y 
Sbjct: 166 IRELSRLADLPTWDRPAS--ACLSSRIPYG 193


>gi|332162627|ref|YP_004299204.1| GMP synthase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606728|emb|CBY28226.1| GMP synthase [glutamine-hydrolyzing] [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666857|gb|ADZ43501.1| GMP synthase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860290|emb|CBX70605.1| GMP synthase [glutamine-hydrolyzing] [Yersinia enterocolitica
           W22703]
          Length = 525

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFGDK 280

Query: 68  CAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                V+ A   R +     V       E   +  +I                       
Sbjct: 281 FGLNIVHVAAEDRFLAALAGVD------EPEAKRKIIGRVFVELFDE------------- 321

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                    +Q     LA G      +        +  + +           +    ++ 
Sbjct: 322 ------EACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEM 368

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 369 KLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|254804264|ref|YP_003082485.1| GMP synthase [Neisseria meningitidis alpha14]
 gi|254667806|emb|CBA03780.1| GMP synthase [Neisseria meningitidis alpha14]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            + V     D E +F             AG T     +  R +  ++ + V     ++L 
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDVEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|254468020|ref|ZP_05081426.1| argininosuccinate synthase [beta proteobacterium KB13]
 gi|207086830|gb|EDZ64113.1| argininosuccinate synthase [beta proteobacterium KB13]
          Length = 404

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G+++  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQEK-YDCEVVTF-----------TADIGQGEEIEPAREKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   Y+ + EE F    I P           Y  G +    +   R      L+ +
Sbjct: 53  KQAGIKEIYIENLEEDFAKNYIFPMFRANAIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 107 AAETGADAIAHG 118


>gi|123441427|ref|YP_001005414.1| GMP synthase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|226739770|sp|A1JKT2|GUAA_YERE8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122088388|emb|CAL11179.1| putative GMP synthase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 525

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFGDK 280

Query: 68  CAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                V+ A   R +     V       E   +  +I                       
Sbjct: 281 FGLNIVHVAAEDRFLAALAGVD------EPEAKRKIIGRVFVELFDE------------- 321

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                    +Q     LA G      +        +  + +           +    ++ 
Sbjct: 322 ------EACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEM 368

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 369 KLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|78048106|ref|YP_364281.1| argininosuccinate synthase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036536|emb|CAJ24227.1| argininosuccinate synthase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 411

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 12/141 (8%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
            A   N       P    +V+A SGG+D+S     L+  GY V  V              
Sbjct: 2   SAASTNPESRIPTPGTKDIVLAFSGGLDTSFCIPYLQERGYAVHTVF-----------AD 50

Query: 65  GSCCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                 ++     +    +   SH   D         + PF  +    +   P +  +R 
Sbjct: 51  TGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRY 110

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +     L    +LG  ++A G
Sbjct: 111 LIVDAALKRAEELGTRIIAHG 131


>gi|323141811|ref|ZP_08076677.1| protein ExsB [Phascolarctobacterium sp. YIT 12067]
 gi|322413703|gb|EFY04556.1| protein ExsB [Phascolarctobacterium sp. YIT 12067]
          Length = 245

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          + M+V+V +SGGVDSS   AL K   G +V+ +++                  +++  A+
Sbjct: 18 EKMKVLVLLSGGVDSSTCLALAKEKYGDNVLALSM-----------SYGQKHAKELAAAQ 66

Query: 78 RVCDTINVSHYVFDYEERF 96
           + D  +V     D  + F
Sbjct: 67 AIADYYHVELLHMDLSKIF 85


>gi|237748639|ref|ZP_04579119.1| GMP synthase [Oxalobacter formigenes OXCC13]
 gi|229380001|gb|EEO30092.1| GMP synthase [Oxalobacter formigenes OXCC13]
          Length = 535

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 34/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAK 278

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D  E+F             AG T     +  R +   + + V  Q  A  +
Sbjct: 279 NLGVKVIHVDASEQFMGQ---------LAGVT---DPEEKRKIIGREFVEV-FQTEAGKI 325

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS----YFLFATTQQQLCDLRFPLGDMKK 197
               ++       D      ++      ++ Q+    + +          L  PL ++ K
Sbjct: 326 KNAKWLAQGTIYPD------VIESAGKGKKGQTIKSHHNVGGLPDTLNLQLLEPLRELFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 380 DEVRELGLALGLP 392


>gi|169831787|ref|YP_001717769.1| GMP synthase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638631|gb|ACA60137.1| GMP synthase, large subunit [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 513

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDSSV AAL+ R  G  +  V     +     + +              
Sbjct: 218 DGRVLCALSGGVDSSVAAALVHRAVGDRLTCVF---VDHGLLRQGESEQVRETF------ 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                 +     + ++RF +           AG   +   +  R +              
Sbjct: 269 -ARRFGMRLVHVEAQDRFLDR---------LAG---VEDPEAKRRIIGTEFIRVFEEEAA 315

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +LG  D L  G        V + G     + +           +    +     L  PL 
Sbjct: 316 KLGPIDFLVQG---TIYPDVVESGTATGAVIKTHHN-------VGGLPEDIRFKLIEPLR 365

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+GL 
Sbjct: 366 WLFKDEVRVLGEELGLP 382


>gi|148381238|ref|YP_001255779.1| GMP synthase [Clostridium botulinum A str. ATCC 3502]
 gi|153933266|ref|YP_001385613.1| GMP synthase [Clostridium botulinum A str. ATCC 19397]
 gi|153935009|ref|YP_001389019.1| GMP synthase [Clostridium botulinum A str. Hall]
 gi|226738421|sp|A7FYP0|GUAA_CLOB1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738422|sp|A5I720|GUAA_CLOBH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148290722|emb|CAL84853.1| GMP synthase [glutamine-hydrolyzing] [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929310|gb|ABS34810.1| GMP synthase [Clostridium botulinum A str. ATCC 19397]
 gi|152930923|gb|ABS36422.1| GMP synthase [Clostridium botulinum A str. Hall]
          Length = 510

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  V     +     K +G     +   D   
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKAIGKQLTCVF---VDHGLLRKDEGD-QVERIFKD--- 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +++    + ++RF   +                 +     ++        ++LG 
Sbjct: 268 ---QFDMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGD 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|126726861|ref|ZP_01742700.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703819|gb|EBA02913.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 519

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            RKG   A + V   R 
Sbjct: 221 DEKVICGLSGGVDSSVAARLIHEAIGDQLTCVF-----VDHGLLRKGE--AEEVVTMFR- 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             D  N+     D +E F                 P       R +     + V ++   
Sbjct: 273 --DNYNMQLIHADEQELF--------LGELDGQSDPE----TKRKIIGKLFIDVFQKHAS 318

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA  LA G      +          +  +           +    ++    L  PL 
Sbjct: 319 EVGGAKFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 371

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 372 ELFKDEVRALGEELGLPKS---------FIGRHPF------PGPGLAIRCPGEI 410


>gi|37526602|ref|NP_929946.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|44887931|sp|Q7N3K4|GUAA_PHOLL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|36786034|emb|CAE15086.1| GMP synthetase [glutamine-hydrolyzing] (glutamine amidotransferase)
           (GMP synthetase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 525

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV A LL R  G  +  V +                    + +A +
Sbjct: 227 EDHVILGLSGGVDSSVTALLLHRAIGNRLTCVFVDN--------------GLLRLNEATQ 272

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLLSVT 133
           V         ++      E+RF  A          AG   P         V         
Sbjct: 273 VMEMFAGKFGLNIVHVPAEDRFLTA---------LAGINDPEEKRKTIGRVFVEVFDEEA 323

Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +Q     LA G      +        +  + +           +    ++    L  PL
Sbjct: 324 SKQAQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEEMKLGLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 KELFKDEVRKIGLELGLP 394


>gi|319941892|ref|ZP_08016213.1| GMP synthase [Sutterella wadsworthensis 3_1_45B]
 gi|319804545|gb|EFW01415.1| GMP synthase [Sutterella wadsworthensis 3_1_45B]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V +     RK  + +                 
Sbjct: 226 VILGLSGGVDSSVTAALIHRAIGQRLTCVFVDNGLLRKNEREQVRETFE----------K 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQL 136
            + +   V D  +RF NA          AG +     +  R +   + +        +  
Sbjct: 276 NMGLKLIVVDAIDRFMNA---------LAGIS---DPEQKRKIIGREFVNVFQEEAAKIK 323

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++  + +           +          L  PL  + 
Sbjct: 324 NAKWLAQGTIYPDVIESAGAKTKKAKVIKSHHN-------VGGLPDTLHLKLLEPLRSLF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 377 KDEVRELGIALGLP 390


>gi|316964494|gb|EFV49574.1| GMP synthase (glutamine-hydrolyzing) [Trichinella spiralis]
          Length = 469

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 29/217 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAG 70
           ++    KD +V++  SGGVDS+V A LL++  G   VI V +     RK    +      
Sbjct: 235 EIKNTVKDKKVLILCSGGVDSTVCAVLLRKALGKSKVIPVFIDNGFLRKNEATEVVEMLK 294

Query: 71  QDVYDARRVCDTINVSHYVFDYEERF--RNAVIVPFASSY----AAGETPLPCVDCNRTV 124
              +D +        S+ ++     F      I      +     A E  + C  CN  +
Sbjct: 295 SLDFDVK-------CSYCLYSCVCPFNKSREFIHSTLPIHDKLLGAFEDAMLCRTCNPEM 347

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRP--------MDLER---DQ 173
           K   +     ++    +A    +  +      G  R  +            D  +   + 
Sbjct: 348 KRRIIGDTFMRM-IKYIARQLKLNMKEVYLAQGTLRPDLIESASQLVSSHADTIKTHHND 406

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +  + A   +    +  PL D  K+ VR LAR++ L 
Sbjct: 407 TSLVRAL--RACGRIIEPLKDFHKDEVRALARDLNLP 441


>gi|303326287|ref|ZP_07356730.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864203|gb|EFL87134.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 301

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 35/234 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D R++VA+SGG DS  +   L R  Y+V G+ + L     ++  +G            R
Sbjct: 46  RDERILVALSGGKDSLALMLELARQEYNVTGLHIDLAIPGSSAAARGV---------VER 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    +   V D        + +P            P       +K      V    G 
Sbjct: 97  FCAKHGLKLLVKDMAAE---GLPIPAVKERLH----RPICSACGKIKRHFFNKVALDEGF 149

Query: 139 DVLATGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D LATGH +       DD   R     +        DQ   L    +        PL  +
Sbjct: 150 DALATGHNL-------DDEAARLFSNTLRWDTAYLSDQGPLLP--GEHGFARKVKPLWRL 200

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVH 247
            +    + A  MG++          C    G  F V+K +   +  A+ G  + 
Sbjct: 201 TEFETANYAFLMGIENHYAP-----CPYSPGASFTVLKGLLQRLETAMPGRKLD 249


>gi|210631316|ref|ZP_03296859.1| hypothetical protein COLSTE_00744 [Collinsella stercoris DSM 13279]
 gi|210160083|gb|EEA91054.1| hypothetical protein COLSTE_00744 [Collinsella stercoris DSM 13279]
          Length = 445

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 70/203 (34%), Gaps = 42/203 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRVC 80
           +VV+A SGG+D+SV    L+ +        + L          G+     D +       
Sbjct: 15  KVVLAYSGGLDTSVCIKWLQNE--------MDL----DVIAMLGNVGQEHDGLEKVAAKA 62

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  V+  V D  + F N  +    ++ A  E   P +   +R +    L+ V  + GA
Sbjct: 63  KQLGCVAVEVVDMTDEFANTYLTCAIAANAMYENKYPLLSALSRPLISKHLVEVAHKYGA 122

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--- 194
             +A G                   C       DQ  F  +         +  P+ +   
Sbjct: 123 TCVAHG-------------------CTGK--GNDQVRFETSIIALDPELKVIAPVREWDL 161

Query: 195 -MKKESVRDLAREMGLDIADKSD 216
            M+ + +   A++ G+ +A   +
Sbjct: 162 GMRPDEI-AYAKKHGVPVAQSIE 183


>gi|28198213|ref|NP_778527.1| argininosuccinate synthase [Xylella fastidiosa Temecula1]
 gi|182680848|ref|YP_001829008.1| argininosuccinate synthase [Xylella fastidiosa M23]
 gi|30172778|sp|P59606|ASSY_XYLFT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|28056283|gb|AAO28176.1| argininosuccinate synthase [Xylella fastidiosa Temecula1]
 gi|182630958|gb|ACB91734.1| Argininosuccinate synthase [Xylella fastidiosa M23]
 gi|307579315|gb|ADN63284.1| argininosuccinate synthase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 401

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  +V+A SGG+D+S     LK  GY V  V          +   G     +D  + R 
Sbjct: 2   SNKNIVLAFSGGLDTSFCIPYLKEQGYAVHTVF---------ADTGGVDEDERDFIEKR- 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V SH   D      +  +     +  A +   P +  +R +    +L     LG
Sbjct: 52  -AAELGVASHLTVDGGPAIWDGFVKQLVWAGEAYQGQYPLLVSDRYLIVDAVLQRADALG 110

Query: 138 ADVLATG 144
              +A G
Sbjct: 111 TCAVAHG 117


>gi|328958127|ref|YP_004375513.1| GMP synthase [Carnobacterium sp. 17-4]
 gi|328674451|gb|AEB30497.1| GMP synthase [Carnobacterium sp. 17-4]
          Length = 516

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSVV  LL++     IG  +T    +     K +        V    
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLLRKGESEQVMESLVG--- 273

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                  ++    D +ERF   +                 V                +L 
Sbjct: 274 ----KFGLNIIRVDAKERFMAKLAGVSDPETKRKIIGNEFVY--------LFDDEATKLE 321

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G      +  G D  +     +           +          L  PL  + 
Sbjct: 322 GVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPDDMQFKLIEPLNTLF 371

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  ++G+ 
Sbjct: 372 KDEVRELGIQLGMP 385


>gi|325578653|ref|ZP_08148729.1| GMP synthase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159692|gb|EGC71823.1| GMP synthase [Haemophilus parainfluenzae ATCC 33392]
          Length = 519

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLHEGDQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 273 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 313

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 314 DDESKKLTNVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 367 VEPLRELFKDEVRKIGLALGLP 388


>gi|303233021|ref|ZP_07319700.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480892|gb|EFL43973.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Atopobium vaginae PB189-T1-4]
          Length = 566

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 60/196 (30%), Gaps = 32/196 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A+SGGVDSSVVAAL+ R  G  +  V            RK      ++V+      
Sbjct: 254 RVILALSGGVDSSVVAALMHRAIGNQLTCVF-----VNHGFLRKDEPELVEEVFH----- 303

Query: 81  DTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              NV       EER+      V  P       G              +        +L 
Sbjct: 304 KQFNVPLVHVHAEERYLELLRDVTDPEEKRRRIGTEF-----------WKVFFEEAAKLS 352

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS---YFLFATTQQQLCDLRFPLGD 194
           +      +  +  +Y        R         +       F           L  PL  
Sbjct: 353 SGKEPIRYLAQGTIYPDIIESGARKTGGKASTIKSHHNLIPFPEGVHFD----LIEPLDH 408

Query: 195 MKKESVRDLAREMGLD 210
             K+ VR L   +GL 
Sbjct: 409 FFKDEVRALGCALGLP 424


>gi|238785330|ref|ZP_04629319.1| GMP synthase [glutamine-hydrolyzing] [Yersinia bercovieri ATCC
           43970]
 gi|238713783|gb|EEQ05806.1| GMP synthase [glutamine-hydrolyzing] [Yersinia bercovieri ATCC
           43970]
          Length = 525

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   +  V++ +SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FS 127
           + +A +V +         +              F S+ A  + P       R +    F 
Sbjct: 267 LNEADQVLEMFGDKFGLNIVHVAAE------DRFLSALAGVDEPE----AKRKIIGRVFV 316

Query: 128 DLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L      +Q     LA G      +        +  + +           +    ++  
Sbjct: 317 ELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMK 369

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 370 LGLVEPLKELFKDEVRKIGLELGLP 394


>gi|325922091|ref|ZP_08183885.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas gardneri ATCC
           19865]
 gi|325547428|gb|EGD18488.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas gardneri ATCC
           19865]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVDIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|301167728|emb|CBW27312.1| GMP synthase [Bacteriovorax marinus SJ]
          Length = 522

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 27/205 (13%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + ++ +   D +V+ A SGGVDS V A L     + V+G      ++             
Sbjct: 209 ATEMVRAIGDKKVLCAFSGGVDSLVAAML----SHRVLG------DNLYCFFVDHGLLRP 258

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFS 127
           QD+   + + + + ++  + D ++ F + +             G T +   +     K  
Sbjct: 259 QDLGHIKLLQEKLPLNIEIIDVKDLFLSKLKGLSDPEEKRKMIGNTFIEVFEK----KVH 314

Query: 128 DLLSVTRQLGADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +    +  +  D L  G  +          +   + +  +           +    ++  
Sbjct: 315 EF-EESHGINFDYLLQGTLYPDVIESISPHEEDGKSVTIKSHHN-------VGGLPERMK 366

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL  + K+ VR L  E+ L+
Sbjct: 367 LKLLEPLRHLFKDEVRKLGEELSLE 391


>gi|150401092|ref|YP_001324858.1| NAD+ synthetase [Methanococcus aeolicus Nankai-3]
 gi|189083396|sp|A6UUS4|NADE_META3 RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|150013795|gb|ABR56246.1| NAD+ synthetase [Methanococcus aeolicus Nankai-3]
          Length = 254

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 42/191 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSS+VA +  +  G D V+GV +                  QD   A  + 
Sbjct: 26  VVLGLSGGIDSSLVATICVKALGKDNVLGVIM-----------PEKNSNTQDKEHAELLA 74

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + + + V D         I     S+ AG                           D 
Sbjct: 75  NQLGIKYTVSD---------ITDVLKSFGAGG-------------------YIPTKEFDK 106

Query: 141 LATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +A G+   R R+ +      +  +       + + Y  + T    L      +G++ K  
Sbjct: 107 MADGNLKPRIRMCILYYFANKNNLLVAGTSNKSEIYMGYGTKYGDLGSDFLLIGNLFKTE 166

Query: 200 VRDLAREMGLD 210
           VR+L++ +G+ 
Sbjct: 167 VRELSKYLGVP 177


>gi|319957259|ref|YP_004168522.1| preq(0) biosynthesis protein quec [Nitratifractor salsuginis DSM
           16511]
 gi|319419663|gb|ADV46773.1| preQ(0) biosynthesis protein QueC [Nitratifractor salsuginis DSM
           16511]
          Length = 225

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 23/200 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V  +SGG+DS+V AAL KR+GY++I V    +N  + ++RK   C      D   V 
Sbjct: 2   KKAVCIISGGMDSAVSAALAKREGYEIIAVH---FNYGQRTERKELECFRLLAEDLEAVE 58

Query: 81  D-TINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPC--VDCNRTVKFSDLLSVTRQL 136
              I++      + +   +A+  P       G  P +P   V     +  S   ++  + 
Sbjct: 59  RYEIDLPF----FTQIGASALTDPSIDVPTEGLEPGVPVTYVPFRNGIFLSIAAAIAEKH 114

Query: 137 GADVLATGHYIRSRLYVGDDGKRR-RIMCRPMDLERDQSYFLFATTQQQLCDLR-FPLGD 194
           GA+ +  G          D  +   R M + ++L           T+++       PL  
Sbjct: 115 GAEAIVIGVVEEDSSGYPDCRESYIRAMEKAINLG----------TKEETKITIKMPLVH 164

Query: 195 MKKESVRDLAREMGLDIADK 214
           ++K  +   A E+G+D++  
Sbjct: 165 LRKSEIVTKALEIGVDLSHT 184


>gi|299146811|ref|ZP_07039879.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23]
 gi|298517302|gb|EFI41183.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++VA+SGG DS V    +L   GY         +   K S R        D    R+
Sbjct: 19  DDKILVALSGGADS-VALLYILHTAGYHCEAAHCNFHLRGKESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + +  +  D+               + + E         R +++     + ++  A
Sbjct: 70  LCERMEIHLHTIDFNTT------QYATEKHISIE------MAARELRYQWFEKIRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVVAVAHH 125


>gi|260173564|ref|ZP_05759976.1| putative cell-cycle protein [Bacteroides sp. D2]
 gi|315921832|ref|ZP_07918072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2]
 gi|313695707|gb|EFS32542.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++VA+SGG DS V    +L   GY         +   K S R        D    R+
Sbjct: 19  DDKILVALSGGADS-VALLYILHTAGYHCEAAHCNFHLRGKESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + +  +  D+               + + E         R +++     + ++  A
Sbjct: 70  LCERMEIHLHTIDFNTT------QYATEKHISIE------MAARELRYQWFEKIRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVVAVAHH 125


>gi|238753867|ref|ZP_04615227.1| GMP synthase [glutamine-hydrolyzing] [Yersinia ruckeri ATCC 29473]
 gi|238707855|gb|EEQ00213.1| GMP synthase [glutamine-hydrolyzing] [Yersinia ruckeri ATCC 29473]
          Length = 525

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTV 124
                        D   ++      E+RF NA+             G   +         
Sbjct: 279 -------------DKFGLNIVHVAAEDRFLNALAGIDEPEAKRKTIGRVFVEV------- 318

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            F +     +Q     LA G      +        +  + +           +    ++ 
Sbjct: 319 -FDE--EACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEM 368

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR +  E+GL 
Sbjct: 369 KLGLVEPLKELFKDEVRKIGLELGLP 394


>gi|237741464|ref|ZP_04571945.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|260495406|ref|ZP_05815532.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|294785923|ref|ZP_06751211.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|229429112|gb|EEO39324.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|260196943|gb|EEW94464.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|294487637|gb|EFG34999.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 350

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 19/189 (10%)

Query: 4   SEATRLNSLDLDKNPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            E   +NSL   KN K+ +  VVV +SGGVDSSV    + +  Y++  V L  +N     
Sbjct: 48  DEEKLINSLQKYKN-KNGKYDVVVPLSGGVDSSVTLIRIVKK-YNL--VPLAFHNDHGFE 103

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
               +        + +++C  ++V   +   +  F   +     S      T   C  C 
Sbjct: 104 DEVAT-------DNVKKLCKILDVDLIIKQQDINFMKKLFHYTHS--MKNRTLSSCFVCG 154

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRP--MDLERDQSYFLFA 179
             + +++ L +       ++  G+       + D+      +      + ++D+++F   
Sbjct: 155 -GIIYANALEIANAFNIPMVINGYSKGQAFMM-DNNNDTLELWSGLLEEFQKDENFFKEF 212

Query: 180 TTQQQLCDL 188
             +Q+    
Sbjct: 213 MYKQEPMKT 221


>gi|227515257|ref|ZP_03945306.1| PP-loop superfamily ATP-binding protein [Lactobacillus fermentum
           ATCC 14931]
 gi|227086386|gb|EEI21698.1| PP-loop superfamily ATP-binding protein [Lactobacillus fermentum
           ATCC 14931]
          Length = 278

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 48/200 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV  SGG+DS+VV   LK    DV+G     +++  A           +   A ++  
Sbjct: 20  RVVVGFSGGIDSTVV---LKEA-LDVLG-----HDNVLAVVANSELFLDAEYEMAGQLAK 70

Query: 82  TINVSHYVFDYEERFRNAV----IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +                V    +   A+      TP       +   +  +  V  Q  
Sbjct: 71  DMG-------------AQVTGIQLDYLANDQIKHNTPESWYAMKQMF-YQAMTQVATQFN 116

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +  G        + DD    R   R  D          A +  Q         D+ K
Sbjct: 117 ADAVLDG-------MIMDDNADFRPGLRARDE-------AGAVSPLQTA-------DLYK 155

Query: 198 ESVRDLAREMGLDIADKSDS 217
             VR+LA+ +GL   +K  S
Sbjct: 156 REVRELAQSLGLTNWNKVAS 175


>gi|157921574|gb|ABW02881.1| GMP synthase [Aggregatibacter aphrophilus NJ8700]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 223 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFIDNGLLRLHEGDQVMEMFG-------- 274

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 275 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 315

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 316 DDESKKLTKVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 368

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 369 VEPLRELFKDEVRKIGLALGLP 390


>gi|160886327|ref|ZP_02067330.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483]
 gi|156108212|gb|EDO09957.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483]
          Length = 426

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++VA+SGG DS V    +L   GY         +   K S R        D    R+
Sbjct: 19  DDKILVALSGGADS-VALLYILHTAGYHCEAAHCNFHLRGKESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + +  +  D+               + + E         R +++     + ++  A
Sbjct: 70  LCERMEIHLHTIDFNTT------QYATEKHISIE------MAARELRYQWFEKIRKECQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVVAVAHH 125


>gi|251792295|ref|YP_003007017.1| GMP synthase [Aggregatibacter aphrophilus NJ8700]
 gi|247533684|gb|ACS96930.1| gmp synthase (glutamine-hydrolyzing) [Aggregatibacter aphrophilus
           NJ8700]
          Length = 519

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L+   +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFIDNGLLRLHEGDQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF             AG   +   +  R +     + V 
Sbjct: 273 -------DKFGLNITRVDAESRFLGE---------LAG---VSDPEAKRKIIGKVFVDVF 313

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 314 DDESKKLTKVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 367 VEPLRELFKDEVRKIGLALGLP 388


>gi|330995862|ref|ZP_08319758.1| putative argininosuccinate synthase [Paraprevotella xylaniphila YIT
           11841]
 gi|329574393|gb|EGG55964.1| putative argininosuccinate synthase [Paraprevotella xylaniphila YIT
           11841]
          Length = 401

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VVVA SGG+D+S     L K  GY+V                     + + +      
Sbjct: 3   KKVVVAFSGGLDTSYTVMYLAKEKGYEVYAA-----------CANTGGFSAEQLKANEEN 51

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQL 136
              +    YV  D  + +    +              P    +  + F    +     ++
Sbjct: 52  AYKLGAKEYVTLDVTKEYYEKSLRYMIYGNVLRNNCYPISVSSERI-FQAIAIARYANEV 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADAIAHG 118


>gi|238752466|ref|ZP_04613942.1| GMP synthase [glutamine-hydrolyzing] [Yersinia rohdei ATCC 43380]
 gi|238709315|gb|EEQ01557.1| GMP synthase [glutamine-hydrolyzing] [Yersinia rohdei ATCC 43380]
          Length = 554

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   +  V++ +SGGVDSSV A LL R  G  +  V +                    
Sbjct: 250 LREQIGEDHVILGLSGGVDSSVTAMLLHRAIGNRLTCVFVDN--------------GLLR 295

Query: 73  VYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---FS 127
           + +A +V +         +              F ++ A  + P       R +    F 
Sbjct: 296 LNEANQVLEMFGDKFGLNIVHVAAE------DRFLTALAGVDEPE----AKRKIIGRVFV 345

Query: 128 DLLS--VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L      +Q     LA G      +        +  + +           +    ++  
Sbjct: 346 ELFDEEACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMK 398

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 399 LGLVEPLKELFKDEVRKIGLELGLP 423


>gi|307947086|ref|ZP_07662421.1| GMP synthase [Roseibium sp. TrichSKD4]
 gi|307770750|gb|EFO29976.1| GMP synthase [Roseibium sp. TrichSKD4]
          Length = 516

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 45/255 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSV A L+    G  +  V            R+G   A + V   R 
Sbjct: 218 DKKVICGLSGGVDSSVAAVLIHEAIGDQLTCVF-----VDHGLLRQGE--AEEVVTMFR- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             D  N+     D ++ F          +      P         +          ++ G
Sbjct: 270 --DHYNMQLIHADEQDLF--------LGALEGVSDPEEKRKTIGRLFIDVFQKHANEIDG 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 320 AEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLRELFK 372

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGR 255
           + VR L  E+GL            F+ +  +         G+A+   G+I   +   + R
Sbjct: 373 DEVRRLGVELGLPKH---------FIGRHPF------PGPGLAIRCPGEI-TRDKLDILR 416

Query: 256 HNGIINYTIGQRRGL 270
               +     +R GL
Sbjct: 417 QADAVYIDQIRRHGL 431


>gi|91762215|ref|ZP_01264180.1| GMP synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718017|gb|EAS84667.1| GMP synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 27/194 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSVVA LL +  G ++  + +     RK  + +              
Sbjct: 223 DNKVICGLSGGVDSSVVAQLLSKAIGKNLTCIFVNNGLLRKNEEIQVVNTFK-------- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
               + ++    + E+ F   +                 +  N  +K         ++  
Sbjct: 275 --KKLKINLIYVNAEKEFIRKLTNVSDPEKKRK------IIGNLFIKI--FERYANRIKN 324

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +    +           +    ++    L  PL  + K
Sbjct: 325 VKFLAQGTLYPDLIESKSVTGSQTSKIKSHHN-------VGGLPKRMKLKLVEPLKFLFK 377

Query: 198 ESVRDLAREMGLDI 211
           + VR L  E+ L  
Sbjct: 378 DEVRKLGLELNLSN 391


>gi|71083355|ref|YP_266074.1| GMP synthase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91206816|sp|Q4FMW8|GUAA_PELUB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71062468|gb|AAZ21471.1| GMP synthetase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 521

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 27/194 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSVVA LL +  G ++  + +     RK  + +              
Sbjct: 223 DNKVICGLSGGVDSSVVAQLLSKAIGKNLTCIFVNNGLLRKNEEIQVVNTFK-------- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
               + ++    + E+ F   +                 +  N  +K         ++  
Sbjct: 275 --KKLKINLIYVNAEKEFIRKLTNVSDPEKKRK------IIGNLFIKI--FERYANRIKN 324

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +        +    +           +    ++    L  PL  + K
Sbjct: 325 VKFLAQGTLYPDLIESKSVTGSQTSKIKSHHN-------VGGLPKRMKLKLVEPLKFLFK 377

Query: 198 ESVRDLAREMGLDI 211
           + VR L  E+ L  
Sbjct: 378 DEVRKLGLELNLSN 391


>gi|270264715|ref|ZP_06192980.1| GMP synthase, glutamine-hydrolyzing [Serratia odorifera 4Rx13]
 gi|270041398|gb|EFA14497.1| GMP synthase, glutamine-hydrolyzing [Serratia odorifera 4Rx13]
          Length = 546

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 248 EDHVILGLSGGVDSSVTAMLLHRAIGKRLTCVFVDNGLLRLNEADQVLEMFG-------- 299

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++      E RF +A   V  P A     G   +          F +  
Sbjct: 300 -------DHFGLNIVHVAAENRFLDALAGVDEPEAKRKIIGRVFVEV--------FDE-- 342

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +Q     LA G      +        +  + +           +    ++    L  
Sbjct: 343 EACKQDEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVE 395

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 396 PLKELFKDEVRKIGLELGLP 415


>gi|291613933|ref|YP_003524090.1| GMP synthase, large subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584045|gb|ADE11703.1| GMP synthase, large subunit [Sideroxydans lithotrophicus ES-1]
          Length = 526

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     ++      +G+               
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDNGLLRLNEGAQVMETF-------AK 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TRQL 136
            +++     D    F           + AG +     +  R +   + + V      +  
Sbjct: 275 NLHMKVIHVDASSEFMK---------HLAGVS---DPEQKRKIIGREFVEVFQRESAKLK 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL ++ 
Sbjct: 323 QAKWLAQGTIYPDVIESASAKTKKAHTIKSHHN-------VGGLPESMHLKLLEPLRELF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|15673468|ref|NP_267642.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13627131|sp|Q9CFJ0|GUAA_LACLA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|12724481|gb|AAK05584.1|AE006379_1 GMP synthase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406956|gb|ADZ64027.1| GMP synthase [Lactococcus lactis subsp. lactis CV56]
          Length = 513

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL+R     IG         + +         +    A +V
Sbjct: 218 DKKVLLGLSGGVDSSVVGVLLQRA----IG--------DQLTSIFVDHGFLRKGE-ADQV 264

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +T+     ++    D ++RF + ++                V                +
Sbjct: 265 METLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVY--------VFDDEANK 316

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D LA G      +  G D  +     +           +    +     L  PL  
Sbjct: 317 LEGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQLIEPLNT 366

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  ++G+ 
Sbjct: 367 LFKDEVRALGTQLGMP 382


>gi|296273405|ref|YP_003656036.1| NAD+ synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296097579|gb|ADG93529.1| NAD+ synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 252

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 44/201 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV V +SGG+DS++VA L K       G  +                +   +  A  VC 
Sbjct: 25  RVTVGLSGGLDSAIVAILSKEA----FGANM------SCVLMPSHYSSEGSISHALEVCK 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++ H + +         I P   +Y               ++  +  +  R      +
Sbjct: 75  KFDIDHEIVE---------IAPMVEAYEK-------FMDGDKLRIGNFSARMRM----SV 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 R +  V     +  I+              + T    +     P+G+M K    
Sbjct: 115 LYDVSARDKSLVVGTSNKSEILL------------GYGTIYGDVACAINPIGEMYKSDEY 162

Query: 202 DLAREMGLD--IADKSDSQDI 220
           +  + +G+   I +K  S D+
Sbjct: 163 EFGKFLGVPESILEKRPSADL 183


>gi|303314913|ref|XP_003067465.1| GMP synthase [glutamine-hydrolyzing], putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107133|gb|EER25320.1| GMP synthase [glutamine-hydrolyzing], putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037830|gb|EFW19767.1| GMP synthase [Coccidioides posadasii str. Silveira]
          Length = 500

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 66/204 (32%), Gaps = 40/204 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VC 80
            V+ A+SGGVDS+V + L+K      IG      +   A      C    +       + 
Sbjct: 193 HVLGAVSGGVDSTVASKLMKEA----IG------DRFHAVLVNNGCMRLNECEQVHETLG 242

Query: 81  DTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNRTVKFS 127
             + ++  V D  ++F +A   V  P          F   + A    +     +   K  
Sbjct: 243 KHLGINLTVVDASKQFLDALKGVTDPERKRKIIGGKFIDVFEAEALKIEAGVKHTGAKVK 302

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L  T             I S  + G     +         +R Q              
Sbjct: 303 WFLQGTL--------YPDVIESLSFKGPSATIKTHHNVGGLPKRMQEGAG--------LK 346

Query: 188 LRFPLGDMKKESVRDLAREMGLDI 211
           L  PL ++ K+ VR L RE+G+  
Sbjct: 347 LIEPLRELFKDEVRQLGRELGIHN 370


>gi|57641756|ref|YP_184234.1| PP family ATPase [Thermococcus kodakarensis KOD1]
 gi|57160080|dbj|BAD86010.1| ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1]
          Length = 323

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 27/202 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ V +SGG DS V+  LL +      ++++ +T+             +      V 
Sbjct: 46  KGERIAVGVSGGKDSVVLMHLLAKLREKFPFELVAITI---------DEGIAGYRPPSVE 96

Query: 75  DARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            A+R    + + H ++ ++E   F     V    S+  GE    C  C    ++  LL+ 
Sbjct: 97  IAKRNAKKLGIEHRIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWRRW--LLNY 154

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLR 189
               +GAD LA GH +       DD  +  +M   R       ++   +     +L    
Sbjct: 155 AAMDVGADKLAVGHNL-------DDEVQMFLMNILRGDIARLGRTGPYYEEIHPELVPRI 207

Query: 190 FPLGDMKKESVRDLAREMGLDI 211
            PL ++ ++ +   A    +++
Sbjct: 208 KPLREIPEKEIVLYAVLNNIEV 229


>gi|317500695|ref|ZP_07958913.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897889|gb|EFV19942.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 430

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAA+L +  G  ++ V          +         + V +  R
Sbjct: 135 DRKVLLALSGGVDSSVVAAMLIKAIGQQLVCVH--------VNHGLMRKNESESVVEVFR 186

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + ++ +    D  ERF      V  P              +     ++        R+
Sbjct: 187 --NQLHANLIYVDATERFLGKLENVSDP--EEKRK-------IIGGEFIRV--FEEEARK 233

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 234 LEGIDFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLKQ 283

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 284 LFKDEVRACGIELGLP 299


>gi|315604497|ref|ZP_07879561.1| argininosuccinate synthase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313781|gb|EFU61834.1| argininosuccinate synthase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 406

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              RVV+A SGG+D+SV    +    G +V+ V                   G+D+   R
Sbjct: 3   SKDRVVLAYSGGLDTSVAIGWIGEQTGREVVAV------------AVDVGQGGEDLEVIR 50

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +       V  YV D  + F +   +P   + A  E   P V   +R V    L+   R+
Sbjct: 51  QRALDCGAVEAYVADARDEFASEYCMPALKANALYEGKYPLVSALSRPVIVKHLVKAARE 110

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 111 FGATTVAHG 119


>gi|237794469|ref|YP_002862021.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Ba4
           str. 657]
 gi|229262993|gb|ACQ54026.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Ba4
           str. 657]
          Length = 266

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+++  + K            L ++  +           ++ +A+ + + 
Sbjct: 18  VAVAFSGGVDSTLLLKVAKEA----------LGDNAISITVLSPYIPKWEIKEAKELANH 67

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 68  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKEKGVK 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 113 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 151

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++E+GL+  +K      C + +  Y   +K 
Sbjct: 152 IRTLSKELGLETWNKP--AYACLLSRIPYNQEIKE 184


>gi|260942363|ref|XP_002615480.1| hypothetical protein CLUG_04362 [Clavispora lusitaniae ATCC 42720]
 gi|238850770|gb|EEQ40234.1| hypothetical protein CLUG_04362 [Clavispora lusitaniae ATCC 42720]
          Length = 416

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 45/134 (33%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V+   L                  +D   A +
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVVA-FLANI------------GQEEDFEAAEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  ++F   V  P   S       Y  G +    V     +      
Sbjct: 49  KALAIGATKFVVVDVRKQFVENVCFPAIQSNAIYENVYLLGTSLARPVIAQAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V  Q G   ++ G
Sbjct: 103 QVAEQEGCFAVSHG 116


>gi|153815930|ref|ZP_01968598.1| hypothetical protein RUMTOR_02175 [Ruminococcus torques ATCC 27756]
 gi|331089830|ref|ZP_08338723.1| GMP synthase 2 [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846749|gb|EDK23667.1| hypothetical protein RUMTOR_02175 [Ruminococcus torques ATCC 27756]
 gi|330403527|gb|EGG83085.1| GMP synthase 2 [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 430

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAA+L +  G  ++ V          +         + V +  R
Sbjct: 135 DRKVLLALSGGVDSSVVAAMLIKAIGQQLVCVH--------VNHGLMRKNESESVVEVFR 186

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + ++ +    D  ERF      V  P              +     ++        R+
Sbjct: 187 --NQLHANLIYVDATERFLGKLENVSDP--EEKRK-------IIGGEFIRV--FEEEARK 233

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G D L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 234 LEGIDFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLKQ 283

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 284 LFKDEVRACGIELGLP 299


>gi|322418214|ref|YP_004197437.1| NAD+ synthetase [Geobacter sp. M18]
 gi|320124601|gb|ADW12161.1| NAD+ synthetase [Geobacter sp. M18]
          Length = 273

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 47/228 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++VA +     G + V    +                  +    AR V +
Sbjct: 32  VLGLSGGIDSALVAYIAAEALGPENVHAYCM-----------PYRTSNPESEAHARLVAE 80

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ ++  V +  E            +Y      +P  D  R         + R+     +
Sbjct: 81  SLGINFEVLEITE---------MVDAYF---DLVPDADNMRRGN-----KMARERM--TI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              H       V     +  ++              + T    +     P+GD+ K  V 
Sbjct: 122 LYDHSAAVGGLVLGTSNKTELLL------------GYGTLHGDMASALNPIGDIYKSQVW 169

Query: 202 DLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +L+  MG+   + +K  S D+ +  Q    D+         L   +V 
Sbjct: 170 ELSEAMGVPREVIEKKPSADL-WAGQTDEQDLGFTYREADELLYRMVD 216


>gi|116753546|ref|YP_842664.1| GMP synthase subunit B [Methanosaeta thermophila PT]
 gi|116664997|gb|ABK14024.1| GMP synthase (glutamine-hydrolyzing) [Methanosaeta thermophila PT]
          Length = 302

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 51/210 (24%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKR 63
           N++D  +     + ++A+SGGVDSSV A L  R  G +++ V      ++ + S +  + 
Sbjct: 9   NAIDEIRREVKGKAIIALSGGVDSSVCAVLAHRALGENLVPVYVDSGLMRRFESERIVEL 68

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDC 120
                                ++    D  ERF NA   V  P       GET       
Sbjct: 69  FSH------------------LNLMKVDASERFLNALRGVTDPEQKRKIIGETF------ 104

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                      V  ++GA+ L  G     R+    +G  +                    
Sbjct: 105 -----IRVFEEVASEVGAEYLIQGTIYPDRIES--EGGIKSHHNVGGLPL---------- 147

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              +   +  P+ D+ K+ VR++AR +GL 
Sbjct: 148 -HIEFKGIIEPMRDLYKDEVREVARALGLP 176


>gi|73669859|ref|YP_305874.1| argininosuccinate synthase [Methanosarcina barkeri str. Fusaro]
 gi|119361288|sp|Q469Z8|ASSY_METBF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|72397021|gb|AAZ71294.1| argininosuccinate synthase [Methanosarcina barkeri str. Fusaro]
          Length = 395

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V +A SGG+D+SV   +LK   GYD              +         +++  A   
Sbjct: 3   KKVALAYSGGLDTSVCIPILKEKYGYD-----------EVVTISVDVGQPEEEIKRADAK 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I+  HY  D +E F    + P   +  + E  +      R +    ++   R+ GA 
Sbjct: 52  AEKISNKHYTIDAKEEFVKDYVFPLIKANGSYEGYVMGTSIARPLIAKKVVEAARKEGAV 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G                   C       DQ  F     Q  +  +  P+ +M    
Sbjct: 112 ALAHG-------------------CTGK--GNDQLRFEAVFRQTDMD-VIAPMREMNLTR 149

Query: 200 VRDL--AREMGLDIADKS 215
             ++  A+E G+ +    
Sbjct: 150 EWEIDYAKEHGIPVEVTK 167


>gi|309774715|ref|ZP_07669739.1| GMP synthase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917615|gb|EFP63331.1| GMP synthase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 513

 Score = 58.2 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 69/207 (33%), Gaps = 33/207 (15%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +    + K     +V++ +SGGVDSSVVAALL +     IG  L          RKG   
Sbjct: 204 MEIEKIRKTVGTDKVLLGLSGGVDSSVVAALLHKA----IGDQLICMFIDHGLLRKGE-- 257

Query: 69  AGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRT 123
                  A  V +T      ++    D +ERF + +                     +  
Sbjct: 258 -------AESVMETFGREMNINLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEE 310

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VK      +T       LA G        V + G +     +           +    + 
Sbjct: 311 VK-----KLTSGEDIKWLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPED 355

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL  + K+ VR L  E+GL 
Sbjct: 356 MQFQLIEPLNTLFKDEVRALGTELGLP 382


>gi|256752431|ref|ZP_05493290.1| NAD+ synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748700|gb|EEU61745.1| NAD+ synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 333

 Score = 58.2 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A  L   D  K     + VV +SGG+DS+VV A+     G + V+ V++        
Sbjct: 60  VYNALVLGVRDYCKKSGFKKAVVGLSGGIDSAVVCAIAVEALGKENVLAVSM-------- 111

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR---------NAVIVPFASSYAAG 111
                   +     DAR + D + +   V   E  F+         N VI   A      
Sbjct: 112 ---PSRYSSEGSKSDARILADNLGIEFRVIPIEPVFKSYLSVFNGDNNVIGDLAEENIQA 168

Query: 112 E 112
            
Sbjct: 169 R 169


>gi|90410884|ref|ZP_01218898.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photobacterium profundum 3TCK]
 gi|90328097|gb|EAS44408.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photobacterium profundum 3TCK]
          Length = 527

 Score = 58.2 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L    +  +  G        
Sbjct: 229 DDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLNEGEQVMEMFGDHFG---- 284

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                    +N+ H   +            F ++ A    P         V        +
Sbjct: 285 ---------LNIVHVKAE----------DRFLNALAGENDPEAKRKIIGHVFIDVFDEES 325

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 326 KKLENAKWLAQGTIYPDVIESAASKNGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 378

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 379 RELFKDEVRKIGLELGLP 396


>gi|94969551|ref|YP_591599.1| NH(3)-dependent NAD(+) synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551601|gb|ABF41525.1| NH(3)-dependent NAD(+) synthetase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 556

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGG+DS++ AA+     G + V+GV +            G   +   + DA  +
Sbjct: 299 KVIIGLSGGIDSALTAAIAVDALGAENVMGVGM-----------PGPYSSQGSIDDAAAL 347

Query: 80  CDTINVSHYVF---DYEERFRNA---VI----VPFASSYAAGET-PLPCVDCNRTVKFSD 128
            + + +   +    D  + FRN    V                T     +  +   KF  
Sbjct: 348 AENLGIRFEIVPIGDVVQAFRNTLAPVFSGFHEDTTEENIQARTRGNILMSLSN--KFGA 405

Query: 129 LL 130
           ++
Sbjct: 406 MV 407


>gi|237745234|ref|ZP_04575715.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 7_1]
 gi|229432463|gb|EEO42675.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 7_1]
          Length = 512

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 215 NKKVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF                T +   +  R +   + + V     
Sbjct: 264 VYAKNFDMNIKCINAEERFLTK------------LTGVTDPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +          +D          + L   
Sbjct: 312 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLP-KD-------LKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|159900802|ref|YP_001547049.1| NAD+ synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893841|gb|ABX06921.1| NAD+ synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 622

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 52/207 (25%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGGVDS++   L  +  G + V+ V +                +   +  A+ 
Sbjct: 381 KQVVIGLSGGVDSALTTYLCAKAFGAENVLAVRM-----------PYRTSSSDSLDHAQL 429

Query: 79  VCDTINVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V D + + H    + +  E + +    P A     G      V     +    L   +++
Sbjct: 430 VIDDLGIQHRTIEITNAVEGYLS--FEPDADGRRRGN-----VMARTRMIV--LFDQSQK 480

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG   + TG                          + +  F + T          PLGD+
Sbjct: 481 LGCIPIGTG-------------------------NKTERLFGYYTWHADDAPPVNPLGDL 515

Query: 196 KKESVRDLAREMGLD--IADKSDSQDI 220
            K  V +LA  +G+   I  K  S D+
Sbjct: 516 FKTQVWELASAIGVPDVIVHKPASADL 542


>gi|113460567|ref|YP_718631.1| GMP synthase [Haemophilus somnus 129PT]
 gi|123327192|sp|Q0I2D2|GUAA_HAES1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|112822610|gb|ABI24699.1| GMP synthase (glutamine-hydrolyzing) [Haemophilus somnus 129PT]
          Length = 523

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 37/195 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G           
Sbjct: 228 VILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG----------- 276

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               D   ++    + E+RF  A+             P         V         ++L
Sbjct: 277 ----DKFGLNIIRVEAEDRFLEALKG--IDE------PEAKRKTIGKVFVDVFDDEAKKL 324

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +        +  + +           +          L  PL ++
Sbjct: 325 TDVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPLREL 377

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +   +GL 
Sbjct: 378 FKDEVRKIGLALGLP 392


>gi|294140155|ref|YP_003556133.1| GMP synthase [Shewanella violacea DSS12]
 gi|293326624|dbj|BAJ01355.1| GMP synthase [Shewanella violacea DSS12]
          Length = 525

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +     G  
Sbjct: 221 LKQQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLNEAEQVMDMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   +     + E RF +A           GE   P  +  R +   
Sbjct: 279 -------------DHFGLKIIHVNAENRFLDA---------MKGE-AEP--EAKRKIIGR 313

Query: 128 DLLSVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEIFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPD 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 DMDLGLVEPLRELFKDEVRKIGLELGLP 394


>gi|325831243|ref|ZP_08164535.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eggerthella sp. HGA1]
 gi|325486844|gb|EGC89291.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eggerthella sp. HGA1]
          Length = 327

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 46/199 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +I V          +         + V D  +
Sbjct: 36  DKKVLLALSGGVDSSVVAALLIKAIGKQLICVH--------VNHGLMRKGESEQVVDVFQ 87

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
             + ++ +    D  +RF    + V  P               +  R +           
Sbjct: 88  --NQLDANLVYVDATDRFLELLDDVAEP---------------EAKRKIIGAEFIRVFEE 130

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R++G             +     G     +    D  +            Q   L  P
Sbjct: 131 EARKVG-----------DEVSFLAQGTIYPDILES-DGVKAHHNVGGLPDDLQFE-LCEP 177

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR + RE+GL 
Sbjct: 178 VKLLYKDEVRVIGRELGLP 196


>gi|322831780|ref|YP_004211807.1| GMP synthase, large subunit [Rahnella sp. Y9602]
 gi|321166981|gb|ADW72680.1| GMP synthase, large subunit [Rahnella sp. Y9602]
          Length = 525

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G  +  V      L+L  + +  +  G        
Sbjct: 227 DDHVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEADQVLEMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++      EERF +A   V  P A     G   +          F +  
Sbjct: 279 -------DRFGLNIVHVAAEERFLSALAGVDEPEAKRKIIGRVFVEV--------FDE-- 321

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +Q     LA G      +        +  + +           +    ++    L  
Sbjct: 322 EACKQDEVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPKEMKLGLVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 375 PLKELFKDEVRKIGLELGLP 394


>gi|313204364|ref|YP_004043021.1| argininosuccinate synthase [Paludibacter propionicigenes WB4]
 gi|312443680|gb|ADQ80036.1| argininosuccinate synthase [Paludibacter propionicigenes WB4]
          Length = 399

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S  A  L +  GY+V        ++  A+    S    + + D     
Sbjct: 4   KVLLAFSGGLDTSFCAMYLAQEKGYEV--------HTAVANTGGFSEDELKVIEDK---A 52

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQLG 137
             +    +V  D  + +    I              P    +  + F    +++  +++G
Sbjct: 53  FRLGAKSHVALDVTQEYYEKSIKYMVFGNVLRNGTYPISVSSERI-FQAIAIINYAKEIG 111

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 112 ADYVAHG 118


>gi|288930774|ref|YP_003434834.1| GMP synthase, large subunit [Ferroglobus placidus DSM 10642]
 gi|288893022|gb|ADC64559.1| GMP synthase, large subunit [Ferroglobus placidus DSM 10642]
          Length = 304

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 35/199 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D + ++A+SGGVDSSV A L     Y  IG      +               +
Sbjct: 14  EIKREVGDGKAIIALSGGVDSSVCAVLA----YKAIG------DRLIPVFVDTGLMREGE 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLS 131
               + V   +N+     D  + F  A           G T P         +       
Sbjct: 64  PERVKEVFGHMNLVF--IDARDEFFKA---------LKGVTDPEEKRKIVGELFVRIFEK 112

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  + GA+ L  G        +   G  +          +            +   +  P
Sbjct: 113 VAEEKGAEYLIQG--TIYPDIIESQGGIKSHHNVGGFPTK-----------YKFKKVIEP 159

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR++AR +GL 
Sbjct: 160 LRELYKDEVREIARYLGLP 178


>gi|148378344|ref|YP_001252885.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502]
 gi|168184830|ref|ZP_02619494.1| PP-loop family protein [Clostridium botulinum Bf]
 gi|226947572|ref|YP_002802663.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
 gi|237793661|ref|YP_002861213.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
 gi|148287828|emb|CAL81894.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|182672085|gb|EDT84046.1| PP-loop family protein [Clostridium botulinum Bf]
 gi|226843802|gb|ACO86468.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
 gi|229260770|gb|ACQ51803.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
          Length = 288

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    CD +N+   +FD  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCDYLNIPINLFD-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|51245182|ref|YP_065066.1| hypothetical protein DP1330 [Desulfotalea psychrophila LSv54]
 gi|50876219|emb|CAG36059.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 244

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 55/231 (23%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDG--YDVIGVTLQL--YNSRKASKRKGSCCAGQDV 73
           RV+V +SGGVDS V+A +L    K+    Y +  +T+    + S K +         Q  
Sbjct: 32  RVLVGLSGGVDSMVLAWILHFWQKKAPISYQIETITVDNGYWRSSKGATDPQLSIGPQM- 90

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC--NRTVKFSDLLS 131
                  +   ++H V D               ++A     + C  C  NR    + L  
Sbjct: 91  -------EKFGITHRVVD---------------AWALAREEMTCYLCARNRR---NQLFD 125

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM--DLERDQSYFLFATTQQQLCDLR 189
           + R  G + +A GH+    L    +      +       +   Q  F           + 
Sbjct: 126 IARAEGFNKIALGHHKDDLL----ETFMLNCLYSGNISTMVPHQKLFAGRLG------II 175

Query: 190 FPLGDMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            P+  ++KE V++LA   G L + +       C +      + V++I A I
Sbjct: 176 RPMAYLEKEHVQELAGLAGLLPVKNY------CPLSDHTRREKVRKILAHI 220


>gi|329765762|ref|ZP_08257331.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137828|gb|EGG42095.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 265

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 43/204 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A+SGGVDS++VA               +L NS  A        + +++  A+++C 
Sbjct: 16  KVMIALSGGVDSALVAY----------AAFQKLGNSAIAVTADYKTLSKEELETAKQICS 65

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +   + DY+E      +   +         L             L+S+ +Q   +V+
Sbjct: 66  EIGIKQILVDYDELQNEEFVKNSSDRCFHCRLELGD----------HLISLAKQHDVEVI 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G        + D G+ R      ++  +             L + RF      K  +R
Sbjct: 116 VDG------TNLDDLGEYRP----GIEALKKNG------ISSPLVETRF-----TKNEIR 154

Query: 202 DLAREMGLDIADKSDSQDICFVQQ 225
             A+ +GL I DK  +   C   +
Sbjct: 155 STAKSVGLSIYDKPSN--SCLASR 176


>gi|86160461|ref|YP_467246.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776972|gb|ABC83809.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 18/211 (8%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYD 75
            K  + +  +SGG+DS++  AL++  G +V  V          ++R+  G         +
Sbjct: 2   KKQGKAIALISGGLDSTLALALVRGQGIEVKAVNFYTGFCITETQRRKGGRPDGTVPQNE 61

Query: 76  ARRVCDTINVSHYVFDYEER-FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           A R    + V     D     + + ++ P    +  G    PCVDC   +       +  
Sbjct: 62  ALRAAADLEVDIEYVDISGPGYFDMLVNP---RWGYGANANPCVDCRVFM-MRKAKEIME 117

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             GAD + TG  +  R         RR   R   +   +S       +  L     P   
Sbjct: 118 AEGADFIFTGEVLGQRPKSQ-----RRDTLR---IIERESGLDGRLLRP-LSAKLLPPTI 168

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
            +KE + D  RE  LDI+ +  ++ +   ++
Sbjct: 169 PEKEGIVD--RERLLDISGRGRTRQMALAEE 197


>gi|328953818|ref|YP_004371152.1| GMP synthase (glutamine-hydrolyzing) [Desulfobacca acetoxidans DSM
           11109]
 gi|328454142|gb|AEB09971.1| GMP synthase (glutamine-hydrolyzing) [Desulfobacca acetoxidans DSM
           11109]
          Length = 515

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 42/198 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSV A LL R  G  +  + +     R+    K      ++        
Sbjct: 220 RVICALSGGVDSSVTAVLLHRAIGDRLTCIFVNNGVLRQGEAEKVVRLFRENYR------ 273

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               ++    D  + F      ++ P       G                       +LG
Sbjct: 274 ----LNLVYVDASKSFLKLLEGIVDPEEKRRRIGREF-----------IRVFAEEAGKLG 318

Query: 138 -ADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               LA        I S  + G     +                +    +    +L  PL
Sbjct: 319 QVKYLAQGTLYPDVIESVSFKGPSATIKTHHN------------VGGLPEVMPLELIEPL 366

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR++  E+GL 
Sbjct: 367 RELFKDEVREVGSELGLP 384


>gi|325968952|ref|YP_004245144.1| GMP synthase domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708155|gb|ADY01642.1| GMP synthase domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 380

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 34/203 (16%)

Query: 14  LDKNPKDMR------VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +DK  ++MR       + A+SGGVDS+  A L +R    +IG  L+         R    
Sbjct: 12  IDKVIENMRSLHINCALAAISGGVDSTTAAILTRR----IIGDRLRAVFIDTGFMRLNEP 67

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              +++   R V     +   + +  +RF   ++    +               R V ++
Sbjct: 68  EHIKEIL--RAV-----LPLEIINASDRFYREMLGLSDAEEKRTRF--------REVFYT 112

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L  + ++   D L  G      +      K +  +   + ++    Y            
Sbjct: 113 VLSEIAKEYDCDWLVQGTIAPDWIETRGGIKTQHNVLEQVGIDTASKYGF---------K 163

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL D+ K+ VR+LA+ +G+ 
Sbjct: 164 LIEPLKDLYKDQVRELAKSLGVP 186


>gi|167756430|ref|ZP_02428557.1| hypothetical protein CLORAM_01963 [Clostridium ramosum DSM 1402]
 gi|167703838|gb|EDS18417.1| hypothetical protein CLORAM_01963 [Clostridium ramosum DSM 1402]
          Length = 515

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 28/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         D + 
Sbjct: 216 NGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVETVFGPDGQ- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + +ER+   +         A       +     ++        +++G 
Sbjct: 272 ----YDLNFIRVNAQERYYEKLKG--VEEPEAKRK----IIGEEFIRV--FEEEAKKIGT 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G      +  G  G+    + +           +          ++  PL D+ 
Sbjct: 320 VDFLVQGTIYPDVVESGLGGE--SAVIKSHHN-------VGGLPDAVDFKEIIEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+G+ 
Sbjct: 371 KDEVRKVGLELGIP 384


>gi|20807253|ref|NP_622424.1| PP family ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515760|gb|AAM24028.1| ATP-utilizing enzymes of the PP-loop superfamily
           [Thermoanaerobacter tengcongensis MB4]
          Length = 255

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 54/215 (25%)

Query: 24  VVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VA SGGVDS+    VA      G D++ VT+                  +++ +++++ 
Sbjct: 2   LVAFSGGVDSTFLAKVAYE--ELGEDMLAVTI-----------STPLHPKREIEESKKLA 48

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGAD 139
             +   H V  YEE      I  F S       P   C  C + + FS L  +  + G  
Sbjct: 49  KVLGFPHLVVRYEEVLE---IEEFKS------NPLNRCYVCKKNL-FSKLKDIAEERGFY 98

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
            +  G    +   V D    R+ +                    +L  +  PL    + K
Sbjct: 99  YIVEG---TNADDVNDFRPGRKALK-------------------ELG-ILSPLLDCGITK 135

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           E +R  ++EM L   +K      C   +  Y + +
Sbjct: 136 EEIRLFSKEMDLTTWNKPSY--ACLASRIPYGEEI 168


>gi|20904364|gb|AAM29733.1| Argininosuccinate synthase [Methanosarcina mazei Go1]
          Length = 414

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V +A SGG+D+SV   +LK   GYD VI +          S   G         DA+ 
Sbjct: 23  KKVALAYSGGLDTSVCIPILKEKYGYDEVITI----------SVDVGQPEEEIRKADAK- 71

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I+  HY  D +E F    I P   +    E  +      R +    ++   ++ GA
Sbjct: 72  -AQKISNKHYTIDAKEEFVRDYIFPLIKANGNYEGYVMGTSVARPLIAKKVVEAAKKEGA 130

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G                   C       DQ  F     Q  +  +  P+ +M   
Sbjct: 131 IALAHG-------------------CTGK--GNDQLRFEAVFRQTDMD-VIAPMREMNLT 168

Query: 199 SVRDL--AREMGLDIADKS 215
              ++  A+E G+ +    
Sbjct: 169 REWEINYAKEHGIPVEATK 187


>gi|317130874|ref|YP_004097156.1| argininosuccinate synthase [Bacillus cellulosilyticus DSM 2522]
 gi|315475822|gb|ADU32425.1| argininosuccinate synthase [Bacillus cellulosilyticus DSM 2522]
          Length = 421

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 42/206 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              +VV+A SGG+D+SV    ++   GYDVI + L +   +     K       DV   +
Sbjct: 2   SKGKVVLAYSGGLDTSVSIKWIQEQYGYDVIALGLDVGEKKDFEAIKN---KALDVGAVK 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
            +         + D +E      ++P   +    E   P     +R +    L+ V  Q 
Sbjct: 59  AI---------MVDAKELLAKEYVLPALKANCLYEGKYPLSSALSRPLISKLLVEVAEQE 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL- 192
           GA  +A G                          +      F  + Q L    ++  P+ 
Sbjct: 110 GAVAVAHG-----------------------CTGKGNDQVRFEVSIQALNPNLEVIAPVR 146

Query: 193 -GDMKKESVRDLAREMGLDIADKSDS 217
              M ++     A E G+ +    ++
Sbjct: 147 EWGMTRDEEIAYAEEKGIPVPATLEN 172


>gi|270308430|ref|YP_003330488.1| argininosuccinate synthase [Dehalococcoides sp. VS]
 gi|270154322|gb|ACZ62160.1| argininosuccinate synthase [Dehalococcoides sp. VS]
          Length = 406

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S     L+   G DVI VT+ + N +  +  K           A +V 
Sbjct: 4   KVVLAYSGGLDTSAAVKWLQEKYGMDVIAVTIDVGNEKDFTLIK---------EKALKVG 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F    I     + A  E   P      R +    ++ +  + GA 
Sbjct: 55  AK---KAYVRDVCKEFAEDYIWKAIKANAMYEGVYPLATALARPLIAKVMVDIALEEGAT 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--GD 194
            +A G                          +      F      L     +  P     
Sbjct: 112 AIAHG-----------------------CTGKGNDQVRFDVGINTLAPHLKIIAPARQWG 148

Query: 195 MKKESVRDLAREMGLDIA 212
           M +E   + A++ G+ + 
Sbjct: 149 MTREQTMEYAQKWGIPVP 166


>gi|170718914|ref|YP_001784084.1| GMP synthase [Haemophilus somnus 2336]
 gi|226739628|sp|B0USI5|GUAA_HAES2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|168827043|gb|ACA32414.1| GMP synthase, large subunit [Haemophilus somnus 2336]
          Length = 523

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF  A+             P         V         
Sbjct: 277 -------DKFGLNIIRVEAEDRFLEALKG--IDE------PEAKRKTIGKVFVDVFDDEA 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTDVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|325925929|ref|ZP_08187297.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas perforans 91-118]
 gi|325543652|gb|EGD15067.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas perforans 91-118]
          Length = 521

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
               + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 274 -AKHMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVEIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|260683439|ref|YP_003214724.1| hypothetical protein CD196_1699 [Clostridium difficile CD196]
 gi|260687035|ref|YP_003218168.1| hypothetical protein CDR20291_1674 [Clostridium difficile R20291]
 gi|260209602|emb|CBA63255.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213051|emb|CBE04409.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 272

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 65/205 (31%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDA 76
           VVVA SGGVDS+    LLK      G +VI VT+   +++SR+             + +A
Sbjct: 25  VVVAYSGGVDSN---FLLKVAKDTLGENVIAVTIHAMMHSSRE-------------IEEA 68

Query: 77  RRVCDTINVSHYVFDYE----ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++      V H + + E    + F+   +               C  C + + FS +  V
Sbjct: 69  KQYTQNFGVKHIILNIENFDLKEFKENGVDR-------------CYHCKKYI-FSKIKEV 114

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +  G        + D G  R  +    +L                  +  PL
Sbjct: 115 AKEHNIKYIVDG------TNMDDLGDYRPGLKALSELG-----------------VISPL 151

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            D  +KKE +R L++ +GL+  +K 
Sbjct: 152 KDSSLKKEEIRSLSKILGLNTFNKP 176


>gi|226326332|ref|ZP_03801850.1| hypothetical protein PROPEN_00180 [Proteus penneri ATCC 35198]
 gi|225205283|gb|EEG87637.1| hypothetical protein PROPEN_00180 [Proteus penneri ATCC 35198]
          Length = 525

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++A+SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LKEQIGDDHVILALSGGVDSSVTALLLNRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCD--TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTV-KFS 127
           + +A +V +         +   E          F ++      P     +  +  +  F 
Sbjct: 267 LNEAEQVMEMFKGKFDLNIIHVEAE------DRFLTALKGENDPEKKRKIIGHTFIEIFD 320

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +     +Q     LA G      +        +  + +           +    +     
Sbjct: 321 E--EAVKQPQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEDMKLG 371

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR +  E+GL 
Sbjct: 372 LVEPLKELFKDEVRKIGLELGLP 394


>gi|138895516|ref|YP_001125969.1| hypothetical protein GTNG_1864 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267029|gb|ABO67224.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 274

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 43/199 (21%)

Query: 19  KDM-RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K+M  V+VA SGGVDS+ + A+ K   G  V+ VT                   ++V  A
Sbjct: 17  KEMGNVLVAFSGGVDSTFLLAMAKEALGDQVLAVT-----------AVSETFPVREVQHA 65

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++ + I V H      E      +               C  C   + ++ L  + R+ 
Sbjct: 66  TKLAEQIGVKHIKIQIHELENEDFVKNDLHR---------CFHCKHNL-YTHLGELARKY 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G       + +     + D G+ R  +         Q        + QL           
Sbjct: 116 G-----HMYTVVDGSNMDDLGEYRPGLQAAR-----QLGVRSPLQEVQL----------Y 155

Query: 197 KESVRDLAREMGLDIADKS 215
           K+ +R L++EM L+  DK 
Sbjct: 156 KKEIRILSKEMELETWDKP 174


>gi|254975416|ref|ZP_05271888.1| hypothetical protein CdifQC_08892 [Clostridium difficile QCD-66c26]
 gi|255314545|ref|ZP_05356128.1| hypothetical protein CdifQCD-7_09350 [Clostridium difficile
           QCD-76w55]
 gi|255517220|ref|ZP_05384896.1| hypothetical protein CdifQCD-_08929 [Clostridium difficile
           QCD-97b34]
 gi|255650326|ref|ZP_05397228.1| hypothetical protein CdifQCD_09094 [Clostridium difficile
           QCD-37x79]
 gi|306520292|ref|ZP_07406639.1| ATP-utilizing enzymes of the PP-loop superfamily [Clostridium
           difficile QCD-32g58]
          Length = 267

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 65/205 (31%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDA 76
           VVVA SGGVDS+    LLK      G +VI VT+   +++SR+             + +A
Sbjct: 20  VVVAYSGGVDSN---FLLKVAKDTLGENVIAVTIHAMMHSSRE-------------IEEA 63

Query: 77  RRVCDTINVSHYVFDYE----ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++      V H + + E    + F+   +               C  C + + FS +  V
Sbjct: 64  KQYTQNFGVKHIILNIENFDLKEFKENGVDR-------------CYHCKKYI-FSKIKEV 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++     +  G        + D G  R  +    +L                  +  PL
Sbjct: 110 AKEHNIKYIVDG------TNMDDLGDYRPGLKALSELG-----------------VISPL 146

Query: 193 GD--MKKESVRDLAREMGLDIADKS 215
            D  +KKE +R L++ +GL+  +K 
Sbjct: 147 KDSSLKKEEIRSLSKILGLNTFNKP 171


>gi|298372999|ref|ZP_06982989.1| GMP synthase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275903|gb|EFI17454.1| GMP synthase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 511

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 48/213 (22%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQ--LYNSRKASKRKG 65
           +   ++ +   D +V+  +SGGVDS+VVA LL++  G  +  + +   L    +  +   
Sbjct: 205 MQVEEIRRTVGDRKVLCGLSGGVDSTVVAVLLQKAIGQQLTCMFIDHGLLRKDEGEQVMQ 264

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNR 122
           +C             D   ++    D ++RF      V  P               +  R
Sbjct: 265 TCG------------DLFGINVVKIDAKQRFLGKLEGVADP---------------EKKR 297

Query: 123 TVKFSDLL----SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            +   + +      +++LG  D LA G      +  G +  +                 +
Sbjct: 298 KIIGGEFVYCFDEESKKLGEFDFLAQGTLYSDVVESGTNTAQTIKTHHN----------V 347

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +     L  PL  + K+ VR L   +G+ 
Sbjct: 348 GGLPKDMKFKLIEPLRKLFKDEVRALGEALGIP 380


>gi|312136736|ref|YP_004004073.1| gmp synthase (glutamine-hydrolyzing) [Methanothermus fervidus DSM
           2088]
 gi|311224455|gb|ADP77311.1| GMP synthase (glutamine-hydrolyzing) [Methanothermus fervidus DSM
           2088]
          Length = 308

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 36/199 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K     + ++A+SGGVDSSV A L K+  G  +I V            R+G     +
Sbjct: 14  NIKKTVGKSKAIIALSGGVDSSVTAFLAKKALGDRLIAVF-----VNHGLLREGEAKEIR 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             +      D +N  +   D  +RF          +    + P         V       
Sbjct: 69  KFFK-----DKLNFRY--VDASKRF--------LDALKGVKDPEKKRKIISKVFIEIFEE 113

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V R+  A  L  G      +      K    +                     +  +  P
Sbjct: 114 VAREEDAKYLLQGTIAPDWIESRGKIKSHHNV---------------VLPSGLVLKVVEP 158

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR LA+E+GL 
Sbjct: 159 LRDLYKDEVRILAKELGLP 177


>gi|299537437|ref|ZP_07050732.1| GMP synthase (glutamine-hydrolyzing) [Lysinibacillus fusiformis
           ZC1]
 gi|298727125|gb|EFI67705.1| GMP synthase (glutamine-hydrolyzing) [Lysinibacillus fusiformis
           ZC1]
          Length = 517

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +          D  
Sbjct: 222 DKKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHNLNRKGEVEQVMKTFTED-- 275

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                 +++    D  +RF + +                 +  N  +          +L 
Sbjct: 276 -----FDMNLIKIDARKRFMDKLAGVSDPEKKRK------IIGNEFIYV--FDEEASKLE 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G        + + G       +           +    +     L  PL  + 
Sbjct: 323 GMDFLAQG---TLYTDIIESGTSTAQTIKSHHN-------VGGLPEDMQFQLIEPLKTLF 372

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GLD
Sbjct: 373 KDEVRALGLELGLD 386


>gi|289671263|ref|ZP_06492338.1| argininosuccinate synthase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 412

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+ + +T   S       KD  +V+A SGG+D+S     L+  GY V  V          
Sbjct: 1   MMSAASTTPESPITTPGTKD--IVLAFSGGLDTSFCIPYLQERGYAVHTVF--------- 49

Query: 61  SKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                     ++     +    +   SH   +         + PF  +    +   P + 
Sbjct: 50  --ADTGGVDAEEREFIEKRAAELGAASHVTVNGGPAIWEGFVKPFVWAGEGYQGQYPLLV 107

Query: 120 CNRTVKFSDLLSVTRQLGADVLATG 144
            +R +     L    +LG  ++A G
Sbjct: 108 SDRYLIVDAALKRAEELGTRIIAHG 132


>gi|166712433|ref|ZP_02243640.1| argininosuccinate synthase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 413

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 12/141 (8%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +    N       P    +V+A SGG+D+S     L+  GY V  V              
Sbjct: 4   QTASTNPDSPIPTPGTKDIVLAFSGGLDTSFCIPYLQERGYAVHTVF-----------AD 52

Query: 65  GSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                 ++     +    +   SH   D         + PF  +    +   P +  +R 
Sbjct: 53  TGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRY 112

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +     L    +LG  ++A G
Sbjct: 113 LIVDAALKRAEELGTRIIAHG 133


>gi|160894878|ref|ZP_02075652.1| hypothetical protein CLOL250_02428 [Clostridium sp. L2-50]
 gi|156863309|gb|EDO56740.1| hypothetical protein CLOL250_02428 [Clostridium sp. L2-50]
          Length = 587

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G       
Sbjct: 283 LREKIGNGKVLCALSGGVDSSVAAVLLSKAVGKQLTCVF---VDQGLLRKNEGDEVEAVF 339

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D        +++    + ++RF      V+ P A     GE                 
Sbjct: 340 GPDG-----PYDLNFIRVNAQDRFYQKLAGVVEPEAKRKIIGEEF-----------IRVF 383

Query: 130 LSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCD 187
               +++GA D L  G        V + G  +    +           +          +
Sbjct: 384 EEEAKKIGAVDFLVQG---TIYPDVIESGLGKSATIKSHHN-------VGGLPDYVDFKE 433

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL  + K+ VR   RE+G+ 
Sbjct: 434 IVEPLRLLFKDEVRKAGRELGIP 456


>gi|283953751|ref|ZP_06371282.1| hypothetical protein C414_000010118 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794792|gb|EFC33530.1| hypothetical protein C414_000010118 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 327

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +   SGG+DS +   L+   G  V  + + +          GS     ++   ++  
Sbjct: 1   MKALALFSGGLDSMLAMKLITAQGIKVKALNINI--------GFGSTSDKSEIM--KKRA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             ++    + D    +   V+  F   Y  G+   PC+DC+  + F   L++ ++  A  
Sbjct: 51  AMVDADFEMIDVRNSYLQKVL--FNPQYGYGKHFNPCIDCHAFM-FKTALAMLKEENASF 107

Query: 141 LATGHYIRSRLYVG 154
           + TG  +  R    
Sbjct: 108 IITGEVLGQRPMSQ 121


>gi|242241946|ref|ZP_04796391.1| PP-loop superfamily ATP-binding protein [Staphylococcus epidermidis
           W23144]
 gi|293368059|ref|ZP_06614691.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|242234577|gb|EES36889.1| PP-loop superfamily ATP-binding protein [Staphylococcus epidermidis
           W23144]
 gi|291317749|gb|EFE58163.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 278

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 43/216 (19%)

Query: 3   VSEATRLNSLDL--DKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           +   T LN+ ++  D   KDM+ VV+A SGGVDSS    LLK+   DV+GV     N  K
Sbjct: 1   METMTELNTKEMKLDALLKDMQSVVIAFSGGVDSS---LLLKKA-IDVLGV-----NYVK 51

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               K      ++   A ++  ++ V     +  E     ++     S+           
Sbjct: 52  PVVVKSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTPESW----------Y 101

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            ++ + +S L ++  +LG + +  G        + DD    R   +  D           
Sbjct: 102 YSKRLMYSQLENIKNKLGFNYVLDG-------MIMDDLDDFRPGLKARDD-------FGV 147

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
            +  Q   L        K  VR+L+ +  L + +K 
Sbjct: 148 RSVLQEAKLY-------KSEVRELSHQHDLPVWNKP 176


>gi|329962376|ref|ZP_08300380.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057]
 gi|328530099|gb|EGF56984.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057]
          Length = 423

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 22/126 (17%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++VA+SGG DS V    LL   GY         +     S R        D    R +C
Sbjct: 21  KILVALSGGADS-VALLHLLLSAGYTCEAAHCNFHLRDAESDR--------DEAFVRNLC 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +  +V  +               F +   A E  +      R ++++    + ++ GA V
Sbjct: 72  NARHVPLHTV------------HFDTKREAEERHISIEMAARELRYAWFEEIRKKCGAGV 119

Query: 141 LATGHY 146
           +A  H+
Sbjct: 120 IAVAHH 125


>gi|187776788|ref|ZP_02993261.1| hypothetical protein CLOSPO_00304 [Clostridium sporogenes ATCC
           15579]
 gi|187775447|gb|EDU39249.1| hypothetical protein CLOSPO_00304 [Clostridium sporogenes ATCC
           15579]
          Length = 510

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKAIGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D  +++    + ++RF   +                 +     ++        ++LG 
Sbjct: 267 --DQFDMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGD 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|325127496|gb|EGC50425.1| GMP synthase [Neisseria meningitidis N1568]
          Length = 521

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D E +F             AG T     +  R +  ++ + V       + 
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 317

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 +  +Y            +   ++   +  +    +     L  PL D+ K+ VR
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKDEVR 375

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 376 ELGVALGLT 384


>gi|294495063|ref|YP_003541556.1| ExsB family protein [Methanohalophilus mahii DSM 5219]
 gi|292666062|gb|ADE35911.1| ExsB family protein [Methanohalophilus mahii DSM 5219]
          Length = 268

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 76/246 (30%), Gaps = 59/246 (23%)

Query: 23  VVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  SGGVDS   SVV+        +V G      +                V  A++ 
Sbjct: 22  IAILFSGGVDSSLLSVVSR-------EVHG------DKHICILLNSPFIPEYAVRRAKQT 68

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQL 136
            +   +  ++ D         I P    Y       P   C  C + V           L
Sbjct: 69  ANEYGLKLHILD---------IDPL--EYENIRM-NPRDRCYHCKKKV-IEVARKYAASL 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G  V+A G        V D    R  +    +      +                  ++ 
Sbjct: 116 GYTVIADG------TNVSDTQTLRPGLAASREEGILHPFVSA---------------NIT 154

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNG---QI 252
           K  +R +A++   D  D   S   C   +  Y +++     G A EG DI+H  G     
Sbjct: 155 KADIRQIAKQKDCDFWDLPSS--ACLASRIPYGEMLDAGKLGRAEEGEDILHRMGFLQCR 212

Query: 253 LGRHNG 258
           +  H+G
Sbjct: 213 MRLHDG 218


>gi|254570633|ref|XP_002492426.1| Arginosuccinate synthetase [Pichia pastoris GS115]
 gi|46981799|gb|AAT07966.1| arginino succinate synthase [Pichia pastoris]
 gi|238032224|emb|CAY70217.1| Arginosuccinate synthetase [Pichia pastoris GS115]
 gi|328353559|emb|CCA39957.1| argininosuccinate synthase [Pichia pastoris CBS 7435]
          Length = 415

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+S++ A L   GY+V+   L                  +D   AR 
Sbjct: 2   SKGKVCLAYSGGLDTSIILAWLLEQGYEVVA-FLANI------------GQEEDFEAARE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               I      V D  + F   V+ P           Y  G +    V     +      
Sbjct: 49  KALKIGATKFIVSDVRKEFVEEVLFPAVQVNAIYENVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V  Q G   +A G
Sbjct: 103 EVAEQEGCFAVAHG 116


>gi|306836007|ref|ZP_07468999.1| argininosuccinate synthase [Corynebacterium accolens ATCC 49726]
 gi|304568173|gb|EFM43746.1| argininosuccinate synthase [Corynebacterium accolens ATCC 49726]
          Length = 406

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 20/152 (13%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G DV+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGDVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     VP   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFAEQYCVPTIKANGMYMKQYPLVSAISRPLITKHLVKAAQEHG- 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
                 H        G+D  R  +  R  D  
Sbjct: 111 ----GTHVSHGCTGKGNDQVRFEVSFRAQDPS 138


>gi|323335655|gb|EGA76938.1| Arg1p [Saccharomyces cerevisiae Vin13]
          Length = 415

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V+   +                  +D   A+ 
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLDQGYEVVA-FMAN------------VGQEEDFDAAKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I        D  E F   ++ P           Y  G +    V     +      
Sbjct: 49  KALKIGACKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 103 DVAKQEGCFAVSHG 116


>gi|294664076|ref|ZP_06729476.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292606150|gb|EFF49401.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 521

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G +     +  R +  +  + +  +   
Sbjct: 274 -AEHMGVKVIRINAADRYFAK---------LEGVS---DPEAKRKIIGNLFVEIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|330443730|ref|NP_014583.2| Arg1p [Saccharomyces cerevisiae S288c]
 gi|151945576|gb|EDN63817.1| arginosuccinate synthetase [Saccharomyces cerevisiae YJM789]
 gi|190407287|gb|EDV10554.1| arginosuccinate synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|256273935|gb|EEU08854.1| Arg1p [Saccharomyces cerevisiae JAY291]
 gi|259149426|emb|CAY86230.1| Arg1p [Saccharomyces cerevisiae EC1118]
 gi|323303151|gb|EGA56953.1| Arg1p [Saccharomyces cerevisiae FostersB]
 gi|323307083|gb|EGA60366.1| Arg1p [Saccharomyces cerevisiae FostersO]
 gi|323331674|gb|EGA73088.1| Arg1p [Saccharomyces cerevisiae AWRI796]
 gi|323352336|gb|EGA84871.1| Arg1p [Saccharomyces cerevisiae VL3]
 gi|329138973|tpg|DAA10725.2| TPA: Arg1p [Saccharomyces cerevisiae S288c]
          Length = 420

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V+   +                  +D   A+ 
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLDQGYEVVA-FMAN------------VGQEEDFDAAKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I        D  E F   ++ P           Y  G +    V     +      
Sbjct: 49  KALKIGACKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 103 DVAKQEGCFAVSHG 116


>gi|46199747|ref|YP_005414.1| thiamine biosynthesis protein thiI [Thermus thermophilus HB27]
 gi|55981765|ref|YP_145062.1| thiamine biosynthesis protein ThiI [Thermus thermophilus HB8]
 gi|81363769|sp|Q5SHD4|THII_THET8 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|81405503|sp|Q72HP1|THII_THET2 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|46197373|gb|AAS81787.1| thiamine biosynthesis protein thiI [Thermus thermophilus HB27]
 gi|55773178|dbj|BAD71619.1| probable thiamine biosynthesis protein ThiI [Thermus thermophilus
           HB8]
          Length = 406

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 43/192 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV  +SGG+DS V A  L R G +V+ V    +     + R+           A+ + +
Sbjct: 176 RVVALLSGGIDSPVAAYRLMRRGAEVVLVHFHPFPLLSGASREK----------AKALAE 225

Query: 82  TI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +      +  ++  + E  R+ ++           T    V   R +      ++ R+ 
Sbjct: 226 RLARFQHRLRLHLVPFSEVQRHIIVE--------APTAYRVVLYRRYM-LRIAEAIAREE 276

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  L TG  +        +                    L A  Q     +  PL    
Sbjct: 277 GALALCTGDSLGQVASQTLEN-------------------LHAVNQAATLPVFRPLIGWD 317

Query: 197 KESVRDLAREMG 208
           KE +   A+ +G
Sbjct: 318 KEEIVAEAQRIG 329


>gi|1703453|sp|P22768|ASSY_YEAST RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|984184|emb|CAA62528.1| argininosuccinate synthase [Saccharomyces cerevisiae]
 gi|1419871|emb|CAA99067.1| ARG1 [Saccharomyces cerevisiae]
          Length = 420

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V+   +                  +D   A+ 
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLDQGYEVVA-FMAN------------VGQEEDFDAAKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I        D  E F   ++ P           Y  G +    V     +      
Sbjct: 49  KALKIGACKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 103 DVAKQEGCFAVSHG 116


>gi|310816163|ref|YP_003964127.1| GMP synthase [Ketogulonicigenium vulgare Y25]
 gi|308754898|gb|ADO42827.1| GMP synthase [Ketogulonicigenium vulgare Y25]
          Length = 518

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+    G  +  V              G     + +   R 
Sbjct: 220 DKQVICALSGGVDSSVTAILINEAIGDQLTCVF----------VDHGLLRKDEAIEVTRM 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLSVTRQL 136
             +  N++    D  E F  A           G T  P V      K          +++
Sbjct: 270 FRENYNLNLIAADESEMFLGA---------LEGVTD-PEVKRKTIGKLFIDVFDKYAKEI 319

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA+ LA G      +          +  +           +    ++    L  PL ++
Sbjct: 320 DGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLREL 372

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L RE+GL 
Sbjct: 373 FKDEVRALGRELGLP 387


>gi|227501829|ref|ZP_03931878.1| argininosuccinate synthase [Corynebacterium accolens ATCC 49725]
 gi|227077854|gb|EEI15817.1| argininosuccinate synthase [Corynebacterium accolens ATCC 49725]
          Length = 406

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 20/152 (13%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G DV+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGDVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     VP   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFAEQYCVPTIKANGMYMKQYPLVSAISRPLITKHLVKAAQEHG- 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
                 H        G+D  R  +  R  D  
Sbjct: 111 ----GTHVSHGCTGKGNDQVRFEVSFRAQDPS 138


>gi|169825804|ref|YP_001695962.1| GMP synthase [Lysinibacillus sphaericus C3-41]
 gi|168990292|gb|ACA37832.1| GMP synthase (glutamine-hydrolyzing) [Lysinibacillus sphaericus
           C3-41]
          Length = 530

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +          D  
Sbjct: 235 DKKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHNLNRKGEVEQVMKTFTED-- 288

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                 +++    D  +RF + +                 +  N  +          +L 
Sbjct: 289 -----FDMNLIKIDARKRFMDKLAGVSDPEKKRK------IIGNEFIYV--FDEEASKLE 335

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G D LA G        + + G       +           +    +     L  PL  + 
Sbjct: 336 GMDFLAQG---TLYTDIIESGTSTAQTIKSHHN-------VGGLPEDMQFQLIEPLKTLF 385

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GLD
Sbjct: 386 KDEVRALGLELGLD 399


>gi|222054594|ref|YP_002536956.1| NAD+ synthetase [Geobacter sp. FRC-32]
 gi|221563883|gb|ACM19855.1| NAD+ synthetase [Geobacter sp. FRC-32]
          Length = 274

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 66/203 (32%), Gaps = 46/203 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R V+ +SGG+DS++VA L     G + V   T+                  +    AR +
Sbjct: 31  RAVLGLSGGIDSALVAYLAAEALGAENVYACTM-----------PYRTSNPESEAHARLI 79

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + + +++ V +         I P   +Y       P     R         + R+    
Sbjct: 80  AEDLGINYQVIE---------ITPMIDAYFQQ---FPDASNMRRGN-----KMARERM-- 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +   H       V     +  ++              + T    +      +GD+ K  
Sbjct: 121 TILYDHSAAHGALVLGTSNKTELLL------------GYGTLFGDMASALNAIGDIYKTQ 168

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           V  L+  MG+   + +K  S D+
Sbjct: 169 VWQLSEAMGVPREVIEKKPSADL 191


>gi|45358912|ref|NP_988469.1| NAD+ synthase-like protein [Methanococcus maripaludis S2]
 gi|45047778|emb|CAF30905.1| NAD+ synthase related protein [Methanococcus maripaludis S2]
          Length = 258

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 50/195 (25%)

Query: 23  VVVAMSGGVDSSVVAAL----LKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDA 76
           VVV +SGG+DS++VA L    L ++   V GV +  +  N                    
Sbjct: 31  VVVGLSGGIDSALVAYLSVMALGKN--RVFGVIMPEKNSNPDDE-------------KYG 75

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           + V +++ + + VFD        V+V F A  Y  G+     VD N   +          
Sbjct: 76  KLVAESLGIEYDVFDITP-----VLVAFGAGGYVEGKEFDKRVDSNLKPRIR-------- 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                            V     ++  +       + + Y  + T    L      +G++
Sbjct: 123 --------------MTEVYYHANKKNYLVAGT-SNKSEIYMGYGTKYGDLGSDFLTIGNL 167

Query: 196 KKESVRDLAREMGLD 210
            K  VR LA  +G+ 
Sbjct: 168 FKTEVRQLAGYVGVP 182


>gi|28377631|ref|NP_784523.1| argininosuccinate synthase [Lactobacillus plantarum WCFS1]
 gi|254555810|ref|YP_003062227.1| argininosuccinate synthase [Lactobacillus plantarum JDM1]
 gi|300767600|ref|ZP_07077510.1| argininosuccinate synthase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308179791|ref|YP_003923919.1| argininosuccinate synthase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|30172775|sp|P59603|ASSY_LACPL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|28270464|emb|CAD63366.1| argininosuccinate synthase [Lactobacillus plantarum WCFS1]
 gi|254044737|gb|ACT61530.1| argininosuccinate synthase [Lactobacillus plantarum JDM1]
 gi|300494585|gb|EFK29743.1| argininosuccinate synthase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045282|gb|ADN97825.1| argininosuccinate synthase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 411

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 37/204 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            ++ ++++A SGG+D+SV  + LK  GYDV+                     G+D+   +
Sbjct: 3   KQNDKIILAYSGGLDTSVAISWLKDKGYDVVAC-------------GIDVGEGKDMDAIK 49

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
                +  VS Y+ D ++ F     +     +   E   P V   +R +    L+++ +Q
Sbjct: 50  EKALKLGAVSSYMIDAKQEFAEEYALIALQGHTLYEGEYPLVSALSRPLIAKKLVTLAKQ 109

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--G 193
             A  +A G                    +  D  R +          ++     P+   
Sbjct: 110 EHAVAIAHG-----------------CTGKGNDQVRFEVAIHALAPDIKIEA---PVRDW 149

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              +E   D A+E  + +    DS
Sbjct: 150 HWSREEEIDYAKEHNIPVPINLDS 173


>gi|19173081|ref|NP_597632.1| similarity to HYPOTHETICAL PROTEIN YGW1_yeast [Encephalitozoon
           cuniculi GB-M1]
 gi|19168748|emb|CAD26267.1| similarity to HYPOTHETICAL PROTEIN YGW1_yeast [Encephalitozoon
           cuniculi GB-M1]
          Length = 317

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 38/244 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ + +SGG DS+V+A +L    ++ GY   GV L L +  +           Q + 
Sbjct: 47  KGDRIGIGVSGGKDSTVLAYVLDLLNRKHGY---GVELVLLSVDEG----IVGYRDQSIE 99

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              R    + +   +  +E+ F    + V+         G     C  C    +   L  
Sbjct: 100 SVCRNSKDLGIKLRIVSFEDVFGVTMDRVVQ------KIGRRSN-CTYCGVFRR-QALEK 151

Query: 132 VTRQLGADVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
             R++G D +ATGH            +  GD  + RR        ++       + ++  
Sbjct: 152 AAREMGVDAIATGHNADDMAETVLLNVLRGDISRLRRCTLAKTKEQKGGDGKAMSLSR-- 209

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
                 P  ++ ++ +   A    L+     +        +G    ++K++       G 
Sbjct: 210 ----LKPFKNIYQKEIVLYAFHRKLEYFST-ECTYSPGASRGDLRMLIKQLEKED--PGI 262

Query: 245 IVHL 248
           I+ +
Sbjct: 263 IMDV 266


>gi|255021404|ref|ZP_05293452.1| GMP synthase (glutamine-hydrolyzing) [Acidithiobacillus caldus ATCC
           51756]
 gi|254969267|gb|EET26781.1| GMP synthase (glutamine-hydrolyzing) [Acidithiobacillus caldus ATCC
           51756]
          Length = 513

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 28/193 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+ A+SGGVDS+V + L+ R     +G  L          R G       V    +V
Sbjct: 216 QGRVISALSGGVDSAVASILVHRA----VGEQLHCIFVDNGLLRFGE------VEQVSQV 265

Query: 80  CDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
                ++  +V D   RF +A+                 +  N  +         + L G
Sbjct: 266 FRQYFHIPLHVVDARARFLDALAGVTDPERKRK------IIGNLFI--EVFDEEAKALGG 317

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD L  G  +   +      K      +           +    ++    L  PL ++ K
Sbjct: 318 ADFLVQG-TLYPDVIESVSFKGPSATIKSHHN-------VGGLPERMRLQLVEPLRELFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR+L RE+G+ 
Sbjct: 370 DEVRELGRELGMP 382


>gi|239624724|ref|ZP_04667755.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521110|gb|EEQ60976.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 432

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +  V +  +   +  + +      ++  DA  
Sbjct: 137 DRKVLLALSGGVDSSVVAALLIKAIGRQLTCVHV-NHGLMRKGESESVIEVFKNQMDANL 195

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V           D  ERF      V  P        E     +     ++        R+
Sbjct: 196 V---------YVDAVERFLGKLEGVADP--------EQKRKIIGA-EFIRV--FEEEARK 235

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLG 193
           L G D LA G        + + G +   + +           +     + L      PL 
Sbjct: 236 LEGIDFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLP-EDLDFTLVEPLR 284

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR    E+GL 
Sbjct: 285 QLFKDEVRACGLELGLP 301


>gi|163749538|ref|ZP_02156785.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella benthica KT99]
 gi|161330648|gb|EDQ01585.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella benthica KT99]
          Length = 525

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 39/205 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++ +SGGVDSSVVA LL R  G  +  V +                    
Sbjct: 221 LKQQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           + +A +V D         +              F  +      P       R +     +
Sbjct: 267 LNEAEQVMDMFGDHFGLKIVHVTAE------NRFLDAMKGEADPE----AKRKIIGRVFV 316

Query: 131 SVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            +  +       A  LA G      +        +  + +           +        
Sbjct: 317 EIFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPDDME 369

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR +  E+GL 
Sbjct: 370 LGLVEPLRELFKDEVRKIGLELGLP 394


>gi|159030131|emb|CAO91023.1| argG [Microcystis aeruginosa PCC 7806]
          Length = 401

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RVV+A SGGVD+SV    LK++           +   +          G ++   + 
Sbjct: 3   RAKRVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELGPIQE 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  +   V + +E F      P   + A  E   P      R +    L+    + 
Sbjct: 52  KARRCGAIESLVVNAQEEFVKEYAFPSIQANALYENRYPLSTALARPLIAKLLVEAAEKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|90424556|ref|YP_532926.1| GMP synthase [Rhodopseudomonas palustris BisB18]
 gi|122475962|sp|Q212S9|GUAA_RHOPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|90106570|gb|ABD88607.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           BisB18]
          Length = 535

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 61/194 (31%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V     +     K +G        +      
Sbjct: 239 KVICGLSGGVDSAVAAVLIHEAIGDQLTCVF---VDHGLLRKDEGKTVVDLFRH------ 289

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
              N+     D  + F      V  P       G               +      + + 
Sbjct: 290 -HYNIPLVHVDAAKLFLGELEGVSDPELKRKTIGRLF-----------INVFEGEAKMIG 337

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LA G      +          +  +           +    ++    L  PL ++ 
Sbjct: 338 GADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLVEPLRELF 390

Query: 197 KESVRDLAREMGLD 210
           K+ VR L RE+GL 
Sbjct: 391 KDEVRVLGRELGLP 404


>gi|317490418|ref|ZP_07948901.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316910462|gb|EFV32088.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 327

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 46/199 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +I V          +         + V D  +
Sbjct: 36  DKKVLLALSGGVDSSVVAALLIKAIGKQLICVH--------VNHGLMRKGESEQVVDVFQ 87

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
             + ++ +    D  +RF    + V  P               +  R +           
Sbjct: 88  --NQLDANLVYVDATDRFLELLDDVAEP---------------EAKRKIIGAEFIRVFEE 130

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R++G             +     G     +    D  +            Q   L  P
Sbjct: 131 EARKVG-----------DEVSFLAQGTIYPDILES-DGVKAHHNVGGLPDDLQFE-LCEP 177

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR + RE+GL 
Sbjct: 178 VKLLYKDEVRVIGRELGLP 196


>gi|302561616|ref|ZP_07313958.1| argininosuccinate synthase [Streptomyces griseoflavus Tu4000]
 gi|302479234|gb|EFL42327.1| argininosuccinate synthase [Streptomyces griseoflavus Tu4000]
          Length = 404

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 68/212 (32%), Gaps = 39/212 (18%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +  ++ P   RVV+A SGG+D+SV    + +  G +VI V                   G
Sbjct: 1   MHCEEKPVTERVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGG 48

Query: 71  QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSD 128
           +D+   R+       V   V D ++ F     +P   + A      P V   +R      
Sbjct: 49  EDLDVIRKRALACGAVEAEVADAKDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKH 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-D 187
           L++  ++ GA  +A G                   C       DQ  F            
Sbjct: 109 LVAAAQKHGATTVAHG-------------------CTGK--GNDQVRFEAGIVALAPDLK 147

Query: 188 LRFPLGDM--KKESVRDLAREMGLDIADKSDS 217
              P+ D    ++         GL IA    S
Sbjct: 148 CIAPVRDYAMTRDKAIAFCEAKGLPIATTKKS 179


>gi|241895377|ref|ZP_04782673.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Weissella paramesenteroides ATCC 33313]
 gi|241871351|gb|EER75102.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Weissella paramesenteroides ATCC 33313]
          Length = 521

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++ +SGGVDSSVV  LL +  G  +  +                     D   A  
Sbjct: 226 DKRVLLGLSGGVDSSVVGVLLHKAIGDQLTSIF---------VDHGLLRKNEADEVMA-A 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           +     ++    D +ERF N +                 +  N  ++         +L G
Sbjct: 276 LGGKFGLNIIKVDGQERFLNKLAGVTDPEQKRK------IIGNEFIRV--FDEEAVKLDG 327

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +  G D  +     +           +    +     L  PL  + K
Sbjct: 328 IDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDIQFQLIEPLNKLFK 377

Query: 198 ESVRDLAREMGLD 210
           + VR L  ++G+ 
Sbjct: 378 DEVRSLGEKLGMP 390


>gi|257791282|ref|YP_003181888.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
 gi|257475179|gb|ACV55499.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
          Length = 327

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 46/199 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +I V          +         + V D  +
Sbjct: 36  DKKVLLALSGGVDSSVVAALLIKAIGKQLICVH--------VNHGLMRKGESEQVVDVFQ 87

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
             + ++ +    D  +RF    + V  P               +  R +           
Sbjct: 88  --NQLDANLVYVDATDRFLELLDDVAEP---------------EAKRKIIGAEFIRVFEE 130

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R++G             +     G     +    D  +            Q   L  P
Sbjct: 131 EARKVG-----------DEVSFLAQGTIYPDILES-DGVKAHHNVGGLPDDLQFE-LCEP 177

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR + RE+GL 
Sbjct: 178 VKLLYKDEVRVIGRELGLP 196


>gi|167038045|ref|YP_001665623.1| NAD+ synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040910|ref|YP_001663895.1| NAD+ synthetase [Thermoanaerobacter sp. X514]
 gi|300914946|ref|ZP_07132262.1| NAD+ synthetase [Thermoanaerobacter sp. X561]
 gi|307723820|ref|YP_003903571.1| NAD+ synthetase [Thermoanaerobacter sp. X513]
 gi|320116454|ref|YP_004186613.1| NAD+ synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855150|gb|ABY93559.1| NAD+ synthetase [Thermoanaerobacter sp. X514]
 gi|166856879|gb|ABY95287.1| NAD+ synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889881|gb|EFK85027.1| NAD+ synthetase [Thermoanaerobacter sp. X561]
 gi|307580881|gb|ADN54280.1| NAD+ synthetase [Thermoanaerobacter sp. X513]
 gi|319929545|gb|ADV80230.1| NAD+ synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 543

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A  L   D  K     + VV +SGG+DS+VV A+     G + V+ V++        
Sbjct: 270 VYNALVLGVRDYCKKSGFKKAVVGLSGGIDSAVVCAIAVEALGKENVLAVSM-------- 321

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR---------NAVIVPFASSYAAG 111
                   +     DAR + D + +   V   E  F+         N VI   A      
Sbjct: 322 ---PSRYSSEGSKSDARILADNLGIEFRVIPIEPVFKSYLSVFNGDNNVIGDLAEENIQA 378

Query: 112 E 112
            
Sbjct: 379 R 379


>gi|256371277|ref|YP_003109101.1| GMP synthase, large subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007861|gb|ACU53428.1| GMP synthase, large subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 517

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R + A+SGGVDS+V AAL     G  +  V            R G     + ++    
Sbjct: 221 DGRAICALSGGVDSTVAAALTAEAIGDRLTCVF-----VDTGLLRSGEAEQVEHLFR--- 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                ++   V D  +RF +A          AG T     +  R +     + +  +  A
Sbjct: 273 --SQFDIELIVVDAADRFFDA---------LAGVT---DPEAKRKIIGELFIRIFEETAA 318

Query: 139 DVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                 H ++  LY    + G       +           +          +  PL  + 
Sbjct: 319 SKTNATHLVQGTLYPDIVESGSDGSATIKSHHN-------VGGLPDDVAFTIVEPLRRLF 371

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+G+ 
Sbjct: 372 KDEVRRIGVELGIP 385


>gi|5734549|emb|CAB52775.1| unnamed protein product [Methanothermobacter thermautotrophicus]
          Length = 167

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV   LL+   G +VI            +         ++V    RV 
Sbjct: 12  KVVLAFSGGLDTSVCIKLLEEKYGMEVI------------TACVDVGQPREEVERPARVA 59

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + +    H+  D  E F    I P   + A  E  PL        +     + V    GA
Sbjct: 60  EELGNYKHHTVDAREEFAENYIFPAIKANAVYEGYPLSTALARPLIAEKI-VEVAESEGA 118

Query: 139 DVLATG 144
             +A G
Sbjct: 119 SAIAHG 124


>gi|226939706|ref|YP_002794779.1| GMP synthase [Laribacter hongkongensis HLHK9]
 gi|226714632|gb|ACO73770.1| GuaA [Laribacter hongkongensis HLHK9]
          Length = 525

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 223 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----EMVMD--MFAR 272

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL- 136
            + V     D    F             AG T     +  R +      +       +L 
Sbjct: 273 NLGVKVIHVDASAEFMGK---------LAGVT---DPEQKRKIIGAEFVAVFQREAEKLP 320

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL ++ 
Sbjct: 321 KAKWLAQGTIYPDVIESAGAKTQKAHTIKSHHN-------VGGLPETLNLKLLEPLRELF 373

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 374 KDEVRQLGIALGLP 387


>gi|217077171|ref|YP_002334887.1| GMP synthase [Thermosipho africanus TCF52B]
 gi|226739758|sp|B7IHI2|GUAA_THEAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|217037024|gb|ACJ75546.1| GMP synthase: glutamine-hydrolyzing [Thermosipho africanus TCF52B]
          Length = 513

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 76/207 (36%), Gaps = 38/207 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVT-----LQLYNSRKASKRKGS 66
           ++ K   + +V++ +SGGVDSSVVA LL K  G + I +      L+L   ++  +    
Sbjct: 205 EIRKVVGNDKVILGLSGGVDSSVVALLLDKAIGKNSIPIFVDTGLLRLNERQEVEENF-- 262

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRT 123
                           + +   V D +ERF +    V  P       G T    V    +
Sbjct: 263 --------------RKLGIDIVVVDAKERFLSNLKGVEDPEEKRKIIGHTF-IDVFYEAS 307

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +K   LL   +      LA G          D  + +    +     +   + +    ++
Sbjct: 308 MK---LLE--KHGNIKYLAQG------TLYPDIIESKVSERKAAAKIKTH-HNVGGLPEK 355

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               +  P   + K+ VR + + +GL 
Sbjct: 356 LPFKIIEPFRYLFKDEVRKIGKILGLP 382


>gi|158520983|ref|YP_001528853.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509809|gb|ABW66776.1| GMP synthase, large subunit [Desulfococcus oleovorans Hxd3]
          Length = 509

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 35/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + RV++ +SGGVDSSV A L+    G  +  + +     RK   +K      +
Sbjct: 204 EIRERVGEKRVILGLSGGVDSSVAALLIHHAIGRQLTCIFVDNGLLRKDEAKKLKAVFAE 263

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +         +N+     +   RF                  +   +  R +     + 
Sbjct: 264 KL--------QLNIRF--VNAAGRF------------LKALAGVADPEKKRKIIGKIFMD 301

Query: 132 V----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           V     +++ GAD LA G      +           + +           +     +   
Sbjct: 302 VFEAEAKKIKGADFLAQGTLYPDVIESQSAFGGPTSIIKSHHN-------VGGLPAKMKL 354

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR L + +GLD
Sbjct: 355 SLIEPLRFLFKDEVRLLGKTLGLD 378


>gi|111657060|ref|ZP_01407855.1| hypothetical protein SpneT_02001713 [Streptococcus pneumoniae
           TIGR4]
 gi|85720578|gb|ABC75801.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae
           TIGR4]
          Length = 139

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    LK+D YDV+ V + +   +              V        
Sbjct: 5   KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDVGEGKDLDFIHDKALKVWAVES------ 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
                 YV D ++ F    ++    S+A  E     V   +R +    L+ +  Q+GA  
Sbjct: 58  ------YVIDVKDEFATDYVLVAHQSHAYYEQKYLLVSALSRPLISKKLVEIAHQIGATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|223040263|ref|ZP_03610541.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Campylobacter rectus RM3267]
 gi|222878516|gb|EEF13619.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Campylobacter rectus RM3267]
          Length = 510

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AALL       I   L L        R G     +  +     
Sbjct: 214 NKKVLCAVSGGVDSSVTAALLAAA----IPQNLILVFVDNGLLRTGEREQVEATFR---- 265

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
              + V     D  + F   ++            GET                    ++ 
Sbjct: 266 -TKLGVELVSIDASKTFLERLVGVTEPEKKRKIIGETF-----------IEIFEKEAKKH 313

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +     G  + I  +           +         +L  PL ++
Sbjct: 314 DNVKFLAQGTLYTDIIESSVAGSSKTI--KSHHN-------VGGLPDWMSFELIEPLREI 364

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 365 FKDEVRQLGLELGLS 379


>gi|71907956|ref|YP_285543.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Dechloromonas aromatica RCB]
 gi|91206803|sp|Q47DK8|GUAA_DECAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71847577|gb|AAZ47073.1| GMP synthase (glutamine-hydrolyzing) [Dechloromonas aromatica RCB]
          Length = 544

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ +  G  +  V      L+L       +              
Sbjct: 230 VILGLSGGVDSSVAAALIHKAIGDQLTCVFVDHGLLRLNEGDMVMEMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                 + V     D  + F             AG   +   +  R +   + + V    
Sbjct: 278 ---ARNLGVKVIRVDAVDDFMGK---------LAG---VSDPEQKRKIIGKEFVEVFQVE 322

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +++L  A  LA G      +     GK+     +           +    +     L  P
Sbjct: 323 SKKLAAAKWLAQGTIYPDVIESAGKGKKGAHTIKSHHN-------VGGLPEDMHLKLLEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +GL 
Sbjct: 376 LRELFKDEVRELGIALGLP 394


>gi|56750177|ref|YP_170878.1| hypothetical protein syc0168_c [Synechococcus elongatus PCC 6301]
 gi|81300196|ref|YP_400404.1| hypothetical protein Synpcc7942_1387 [Synechococcus elongatus PCC
           7942]
 gi|56685136|dbj|BAD78358.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169077|gb|ABB57417.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 275

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 49/196 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA SGG+DSS+VA L  ++ G   I VT              +    +D+  AR   + 
Sbjct: 20  LVAYSGGIDSSLVAYLAAQELGDRAIAVT-----------AVSASLLPEDLEAARSQAEW 68

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVL 141
           + ++H            +     ++      P   C  C   +    L  + +  G  V+
Sbjct: 69  MGIAH----------EQIQTDELANPNYASNPSNRCYFCKSEL-HDRLQPLAQSRGFAVV 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      +   D G  R  +    +                   +R PL +  + K  
Sbjct: 118 LDG------VNADDLGDHRPGLQAAAERG-----------------VRSPLAEAGISKLE 154

Query: 200 VRDLAREMGLDIADKS 215
           VR LARE+G+   DK 
Sbjct: 155 VRQLARELGMPWWDKP 170


>gi|168182080|ref|ZP_02616744.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum Bf]
 gi|237796735|ref|YP_002864287.1| GMP synthase [Clostridium botulinum Ba4 str. 657]
 gi|259647673|sp|C3KUC5|GUAA_CLOB6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|182674773|gb|EDT86734.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum Bf]
 gi|229263393|gb|ACQ54426.1| GMP synthase [Clostridium botulinum Ba4 str. 657]
          Length = 510

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 215 NKKVICALSGGVDSSVAAVIVHKAIGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D  +++    + ++RF   +                 +     ++        ++LG 
Sbjct: 267 --DQFDMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGD 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|326692579|ref|ZP_08229584.1| GMP synthase [Leuconostoc argentinum KCTC 3773]
          Length = 515

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 34/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-- 77
           D +V++ +SGGVDSSVV  LL +     IG         + +         +    A+  
Sbjct: 220 DKKVLLGLSGGVDSSVVGVLLHKA----IG--------DQLTSIFVDHGLLRKNEAAQVM 267

Query: 78  -RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQ 135
             +     ++    D +ERF + +                 +  N  ++ F+D     + 
Sbjct: 268 EMMGKQFGLNIIKVDAQERFLSKLAGVTDPEQKRK------IIGNEFIEVFND--EAAKL 319

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D LA G      +  G D  +     +           +    +     L  PL  +
Sbjct: 320 KDIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQLIEPLNTL 369

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L   + + 
Sbjct: 370 FKDEVRELGEALDMP 384


>gi|237738052|ref|ZP_04568533.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229419932|gb|EEO34979.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 512

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSV A L+ +     IG         + +         +   +A++V
Sbjct: 215 DKKVLLGLSGGVDSSVAATLIHKA----IG--------DQLTCIFVDTGLLRK-DEAKKV 261

Query: 80  CDTINVSHYV----FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
            +    + ++     D EERF +           AG   +   +  R +   + +     
Sbjct: 262 MEVYGENFHMNIKCVDAEERFLSK---------LAG---VSDPESKRKIIGKEFIEVFDE 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +    + LA G  I   +      K   +  +           +    +     L  
Sbjct: 310 EAAKLTDVEFLAQG-TIYPDVIESMSVKGPSMTIKSHHN-------VGGLPEDMKFKLLE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR + RE+G+ 
Sbjct: 362 PLRELFKDEVRKVGRELGIP 381


>gi|126731353|ref|ZP_01747160.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sagittula stellata E-37]
 gi|126708264|gb|EBA07323.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sagittula stellata E-37]
          Length = 523

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 58/237 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV   LL    G  +  V                      + +A +
Sbjct: 225 DKQVICALSGGVDSSVTGILLHEAIGDQLTCVF--------------VDHGLLRLNEAEQ 270

Query: 79  VC----DTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           V     D  N++    D  + F      V  P       G+                   
Sbjct: 271 VVQMFRDNYNLNLIHADESDLFLGALEGVSDPEIKRKTIGKLF-----------IDVFQK 319

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              Q+ GA+ LA G      +          +  +           +    ++    L  
Sbjct: 320 YADQIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVE 372

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           PL ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 373 PLRELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 414


>gi|330433368|gb|AEC18427.1| GMP synthase [Gallibacterium anatis UMN179]
          Length = 519

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L  + +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEADQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF         ++    E P         V        +
Sbjct: 273 -------DKFGLNIIRVDAEDRF--------LNALKGIEDPEAKRKTIGKVFVDVFDDES 317

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 318 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 370

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 371 RELFKDEVRKIGLALGLP 388


>gi|288932377|ref|YP_003436437.1| thiamine biosynthesis/tRNA modification protein ThiI [Ferroglobus
           placidus DSM 10642]
 gi|288894625|gb|ADC66162.1| thiamine biosynthesis/tRNA modification protein ThiI [Ferroglobus
           placidus DSM 10642]
          Length = 369

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 36/188 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +VV  +SGG+DS V A L  + G +VI V           +   S    + + D A ++ 
Sbjct: 162 KVVAQISGGIDSPVAAFLAMKRGAEVIAVHFFN-------QTLHSPQVRKKILDLAEKLS 214

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +   V  Y+  +EE  +  +I    + Y         V     ++ S+++   ++  A  
Sbjct: 215 EFHKVKLYMVPFEEV-QREIIRVIPAKYRM------IVYRRSMMRMSNVI--AKKENAKA 265

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +        D  R               Y            +  PL    KE  
Sbjct: 266 IVTGDSLSQVASQTLDNIRVI-------------YSASELP------VLPPLIGFDKEET 306

Query: 201 RDLAREMG 208
            ++A+++G
Sbjct: 307 IEIAKKIG 314


>gi|153940088|ref|YP_001392640.1| GMP synthase [Clostridium botulinum F str. Langeland]
 gi|170756813|ref|YP_001782918.1| GMP synthase [Clostridium botulinum B1 str. Okra]
 gi|226738423|sp|B1IFD1|GUAA_CLOBK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738424|sp|A7GIN0|GUAA_CLOBL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|152935984|gb|ABS41482.1| GMP synthase [Clostridium botulinum F str. Langeland]
 gi|169122025|gb|ACA45861.1| GMP synthase [Clostridium botulinum B1 str. Okra]
 gi|295320625|gb|ADG01003.1| GMP synthase [Clostridium botulinum F str. 230613]
 gi|322807605|emb|CBZ05180.1| gmp synthase [glutamine-hydrolyzing] [Clostridium botulinum H04402
           065]
          Length = 510

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKAIGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D  +++    + ++RF   +                 +     ++        ++LG 
Sbjct: 267 --DQFDMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGD 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|229542770|ref|ZP_04431830.1| ExsB family protein [Bacillus coagulans 36D1]
 gi|229327190|gb|EEN92865.1| ExsB family protein [Bacillus coagulans 36D1]
          Length = 269

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 44/195 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVA SGGVDS+    LLK    DV+G      +   A           ++ +A+++   
Sbjct: 18  VVVAFSGGVDST---FLLKVA-VDVLGA-----DKVLAVTADSETYPSTELEEAKKLAAL 68

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I   H V    E             YA       C  C   + F ++L +  Q G   + 
Sbjct: 69  IGARHQVIKTSEL--------SIPGYAK-NDWNRCYFCKNGL-FEEILPIMNQKGFRNVV 118

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G      L   D G+ R  +    +                   +R PL +  + KE +
Sbjct: 119 YG------LIADDMGEHRPGIRAAKEHG-----------------VRGPLQEANLYKEEI 155

Query: 201 RDLAREMGLDIADKS 215
           R L++E+GL   +K 
Sbjct: 156 RKLSKELGLPTWEKP 170


>gi|118474706|ref|YP_892420.1| GMP synthase [Campylobacter fetus subsp. fetus 82-40]
 gi|226738410|sp|A0RQD7|GUAA_CAMFF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118413932|gb|ABK82352.1| GMP synthase, glutamine-hydrolyzing [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 510

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 41/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVAALL                                  +A++V
Sbjct: 214 NDKVLCAVSGGVDSSVVAALLAHA-------------IPDNLIVVFVDNGLLRTNEAKQV 260

Query: 80  CD----TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +     + V+    D  E F +    V  P       GET +                 
Sbjct: 261 EEMFKLKLGVNLISIDASELFLSRLKGVRDPEKKRKIIGETFIEV-----------FDKE 309

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++      LA G      +     G  + I  +           +    +    +L  P
Sbjct: 310 AKKHSNVKYLAQGTLYTDVIESSVVGSSKTI--KSHHN-------VGGLPEWMEFELIEP 360

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L  E+GL 
Sbjct: 361 LREIFKDEVRRLGLELGLS 379


>gi|42527224|ref|NP_972322.1| GMP synthase [Treponema denticola ATCC 35405]
 gi|50400363|sp|Q73LZ4|GUAA_TREDE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41817648|gb|AAS12233.1| GMP synthase [Treponema denticola ATCC 35405]
          Length = 523

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+    KD +V++A+SGGVDSSV+AALL R  G ++  +     +     K +G      
Sbjct: 221 DVQNTVKDGKVLLALSGGVDSSVLAALLNRAVGKNLTCIF---VDHGLMRKNEGD----- 272

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +         ++    + E RF      V  P       GE                
Sbjct: 273 ---EVEAAFRDTPMNFIRVNAESRFLGKLKGVSDPEKKRKIIGEEF-----------IRV 318

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 ++G  D LA G      +  G  G         +    D   F           
Sbjct: 319 FEEEAEKIGTVDFLAQGTIYADVVESGTKGSAVIKSHHNVGGLPDHISFKS--------- 369

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ +R+L  E+GL 
Sbjct: 370 LIEPLKTLFKDEIRNLGTELGLP 392


>gi|224023875|ref|ZP_03642241.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM
           18228]
 gi|224017097|gb|EEF75109.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM
           18228]
          Length = 437

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 24/127 (18%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV+VA+SGG DS  VA L  L+  GY +       +   + S R        D    R++
Sbjct: 21  RVLVALSGGADS--VALLCVLQELGYRLEAAHCNFHLRGEESDR--------DERFVRQL 70

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+   +  +V  +              +YAA    +      R +++     +  Q G  
Sbjct: 71  CERRQIPLHVIHFS-----------TGAYAASR-KISIEMAARELRYRWFEELRDQGGFR 118

Query: 140 VLATGHY 146
           V+A  H+
Sbjct: 119 VVAVAHH 125


>gi|254415451|ref|ZP_05029211.1| NAD synthase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177632|gb|EDX72636.1| NAD synthase family [Microcoleus chthonoplastes PCC 7420]
          Length = 586

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RVV+ +SGG+DSS+VAAL     G + V+GV +                +   + DA  
Sbjct: 303 KRVVIGLSGGIDSSLVAALATEALGRENVLGVLM-----------PSPHSSEHSINDALA 351

Query: 79  VCDTINVSHYVFDYEERFR--NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +   + +  +     E  +  +  + P  +    G T    +     ++ + L+++  + 
Sbjct: 352 LAKNLGIKTHTLPIGELMQGYDQTLDPLFAGTEFG-TAEENIQA--RIRGNLLMAIANKF 408

Query: 137 GADVLATG 144
              +++TG
Sbjct: 409 DYLLISTG 416


>gi|168179058|ref|ZP_02613722.1| GMP synthase [Clostridium botulinum NCTC 2916]
 gi|182670215|gb|EDT82191.1| GMP synthase [Clostridium botulinum NCTC 2916]
          Length = 510

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKAIGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D  +++    + ++RF   +                 +     ++        ++LG 
Sbjct: 267 --DQFDMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGD 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|118443752|ref|YP_878987.1| hypothetical protein NT01CX_0521 [Clostridium novyi NT]
 gi|118134208|gb|ABK61252.1| conserved hypothetical protein [Clostridium novyi NT]
          Length = 239

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   KR   + +++I +TL              
Sbjct: 14  DFDLIQAGDKIAVGLSGGKDSITLLYLLNAYKRFSPEPFELIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             AG D  +  R+C  +NV +Y+  ++ + +  V      S        PC  C   ++ 
Sbjct: 61  PGAGADFSEMIRICKELNVPYYL--FKTKIKEIVFDIRKES-------NPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L    ++LG + +A GH+    +  
Sbjct: 111 GSLNDHAKKLGCNKVALGHHKNDAIET 137


>gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304]
 gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 304

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVTLQLYNSRKASKRKGSCCAGQD 72
           K  R+ +A+SGG DS V  A +    Y      +   +T+             +      
Sbjct: 47  KGDRIAIALSGGKDS-VTLAFVLNKLYGFRSDLEFFAITI---------DEGIAGYRPPT 96

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V  AR+V + + + H V  +EE F                   PC  C    K+  L   
Sbjct: 97  VEIARKVTEQLGMEHLVVSFEENF-----GMTLDEMVKRGDKKPCTYCGVFRKY-LLNRT 150

Query: 133 TRQLGADVLATGHYI 147
            R++GA  LATGH +
Sbjct: 151 AREMGATKLATGHNL 165


>gi|300173029|ref|YP_003772195.1| argininosuccinate synthase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887408|emb|CBL91376.1| argininosuccinate synthase [Leuconostoc gasicomitatum LMG 18811]
          Length = 408

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    LK  GY++I V L                 G+D+   +    
Sbjct: 4   KLVLAYSGGLDTSVAIPWLKGKGYEIIAVVL------------NVGQHGKDMDMIQAKAL 51

Query: 82  TINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +  S   V D +  F +  + P   +    E   P V   +R +    L+ +  +  A 
Sbjct: 52  QVGASQSIVIDAQAEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENDAV 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AIAHG 116


>gi|284926056|gb|ADC28408.1| NAD synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 246

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 43/196 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN +   VV+ +SGG+DS++VA L KR    +V  + +                   ++ 
Sbjct: 19  KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLM-----------PTQISNKANLE 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   + 
Sbjct: 68  DALRLCADLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRMSLLYDYS- 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                       +++ L +G   K   ++              + T    L     P+G 
Sbjct: 121 -----------ALKNSLVIGTSNKSELLL-------------GYGTIYGDLACAFNPIGS 156

Query: 195 MKKESVRDLAREMGLD 210
           + K  +  LA+ + L 
Sbjct: 157 LYKSEIYALAKYLNLH 172


>gi|57237655|ref|YP_178903.1| NAD+ synthetase [Campylobacter jejuni RM1221]
 gi|86152105|ref|ZP_01070317.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153555|ref|ZP_01071759.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121613744|ref|YP_001000499.1| NAD synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005435|ref|ZP_02271193.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205356779|ref|ZP_03223538.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315124332|ref|YP_004066336.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|81675595|sp|Q5HUY2|NADE_CAMJR RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|189030353|sp|A1VZF8|NADE_CAMJJ RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|57166459|gb|AAW35238.1| NAD+ synthetase [Campylobacter jejuni RM1221]
 gi|85840890|gb|EAQ58140.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843281|gb|EAQ60492.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249363|gb|EAQ72323.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205345346|gb|EDZ31990.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315018054|gb|ADT66147.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315058264|gb|ADT72593.1| NAD synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 246

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 43/196 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN +   VV+ +SGG+DS++VA L KR    +V  + +                   ++ 
Sbjct: 19  KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLM-----------PTQISNKANLE 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   + 
Sbjct: 68  DALRLCADLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRMSLLYDYS- 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                       +++ L +G   K   ++              + T    L     P+G 
Sbjct: 121 -----------ALKNSLVIGTSNKSELLL-------------GYGTIYGDLACAFNPIGS 156

Query: 195 MKKESVRDLAREMGLD 210
           + K  +  LA+ + L 
Sbjct: 157 LYKSEIYALAKYLNLH 172


>gi|86150226|ref|ZP_01068453.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597508|ref|ZP_01100742.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562438|ref|YP_002344217.1| NAD synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|25090805|sp|Q9PPB0|NADE_CAMJE RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|85839342|gb|EAQ56604.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190100|gb|EAQ94075.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360144|emb|CAL34938.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315928259|gb|EFV07575.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929367|gb|EFV08573.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 246

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 43/196 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN +   VV+ +SGG+DS++VA L KR    +V  + +                   ++ 
Sbjct: 19  KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLM-----------PTQISNKANLE 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   + 
Sbjct: 68  DALRLCADLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRMSLLYDYS- 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                       +++ L +G   K   ++              + T    L     P+G 
Sbjct: 121 -----------ALKNSLVIGTSNKSELLL-------------GYGTIYGDLACAFNPIGS 156

Query: 195 MKKESVRDLAREMGLD 210
           + K  +  LA+ + L 
Sbjct: 157 LYKSEIYALAKYLNLH 172


>gi|242398342|ref|YP_002993766.1| Probable thiamine biosynthesis protein thiI [Thermococcus sibiricus
           MM 739]
 gi|242264735|gb|ACS89417.1| Probable thiamine biosynthesis protein thiI [Thermococcus sibiricus
           MM 739]
          Length = 382

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 51/235 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+  +SG +DSSV A L+ + G +VI V +                  + +   R++
Sbjct: 180 QGKVMALLSGSIDSSVAAFLMMKRGCEVIPVHI--------------YVGEKTLEKVRKI 225

Query: 80  CDTINVSHY------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +   HY      +   + + R  +I               CV C + +       + 
Sbjct: 226 WNQLKKYHYGGKSDLIV-IKPQEREKIIQ-TLKQLKKEN--YTCVFC-KYMMIKKADEIA 280

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R+ GA  +  G  +        +                  Y +   +   +     PL 
Sbjct: 281 REFGAKGIVMGDSLGQVASQTLENM----------------YIVSQASDLPIYR---PLV 321

Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQ-----QGKYFDVVKRINAGIALE 242
            M KE +  +A+ +   +++   +  ++ F+      +G + +  K        E
Sbjct: 322 GMDKEEIVAIAKTIRTFELSTLPE-DEVPFIPKHPVIRGSWEEFKKLYKTIFGEE 375


>gi|150400611|ref|YP_001324377.1| GMP synthase subunit B [Methanococcus aeolicus Nankai-3]
 gi|150013314|gb|ABR55765.1| GMP synthase, large subunit [Methanococcus aeolicus Nankai-3]
          Length = 310

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 34/211 (16%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           M   E    +  ++ +   D + ++A+SGGVDS+V A L  R  G  ++ V     ++  
Sbjct: 2   MNTKEFIEESIAEIKEQIGDKKTIIALSGGVDSAVAAVLTARAIGDQLLAVF---VDTGL 58

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
             K +          D       + ++  + + +E+F               + P     
Sbjct: 59  MRKNEAQEIYKIFKED-------MGLNLRIIEAKEQF--------LKELDGVDDPEEKRK 103

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
               +       V ++ G +VL  G      +    + K    +                
Sbjct: 104 IIGRIFIEIFEEVAKENGEEVLVQGTIAPDWIESEGEIKTHHNIA--------------- 148

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                + +L  PL D+ K+ VR LA+++GL 
Sbjct: 149 LPSGMVLELVEPLRDLYKDEVRLLAKDLGLP 179


>gi|289643229|ref|ZP_06475355.1| argininosuccinate synthase [Frankia symbiont of Datisca glomerata]
 gi|289506934|gb|EFD27907.1| argininosuccinate synthase [Frankia symbiont of Datisca glomerata]
          Length = 400

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G +V+ +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGAETGAEVVAL------------AVDVGQGGEDLEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            T   V   V D  E F  A + P   + A      P +   +R V    L+   R  GA
Sbjct: 52  LTCGAVESVVVDAREEFARAFVAPAIRANALYMDRYPLISSLSRPVIVRHLVEAARTFGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
             +A G                    +  D  R +   +    +     +  P+ D  M 
Sbjct: 112 GAIAHG-----------------CTGKGNDQVRFEVGVMALAPEL---KVLAPVRDSGMT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E GL I   + S
Sbjct: 152 RDKAIAFADERGLPIDVTARS 172


>gi|291456422|ref|ZP_06595812.1| argininosuccinate synthase [Bifidobacterium breve DSM 20213]
 gi|291381699|gb|EFE89217.1| argininosuccinate synthase [Bifidobacterium breve DSM 20213]
          Length = 412

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++          + + +   
Sbjct: 4   NNRLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGES---------LETIKERAL 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
            C    +  YV D  + F N   +    + A  E   P V   +R +    L+    Q G
Sbjct: 55  ACGA--IESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFG 112

Query: 138 ADVLATG 144
           AD ++ G
Sbjct: 113 ADTISHG 119


>gi|240139683|ref|YP_002964160.1| GMP synthetase (glutamine aminotransferase) [Methylobacterium
           extorquens AM1]
 gi|254562094|ref|YP_003069189.1| GMP synthetase [Methylobacterium extorquens DM4]
 gi|240009657|gb|ACS40883.1| GMP synthetase (glutamine aminotransferase) [Methylobacterium
           extorquens AM1]
 gi|254269372|emb|CAX25338.1| GMP synthetase (glutamine aminotransferase) [Methylobacterium
           extorquens DM4]
          Length = 521

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V+  +SGGVDSSV A L+    G  +  V      ++L    +                
Sbjct: 225 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRLGEGDEV--------------- 269

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            R   D  N+       ++ F      V  P       G      V      K       
Sbjct: 270 VRLFRDHYNIPLVHVQAQDLFIGALEGVDDPEVKRKTIGRLF-IDVFEAEAGKIG----- 323

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GA  LA G      +          +  +           +    ++    L  PL
Sbjct: 324 ----GAAFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMKLVEPL 372

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L +E+GL 
Sbjct: 373 RELFKDEVRLLGKELGLP 390


>gi|86608784|ref|YP_477546.1| hypothetical protein CYB_1309 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557326|gb|ABD02283.1| conserved hypothetical protein TIGR00268 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 306

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 66/196 (33%), Gaps = 47/196 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VA SGGVDSS+VA L     G   + VT                   +D+ +A +   
Sbjct: 51  VLVAYSGGVDSSLVAKLACDQLGERALAVT-----------AASPSLLPEDLEEAIQQAR 99

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + +  E        P   SY A      C  C   +    L  + +  G + +
Sbjct: 100 QIGIRHQIVETHELE-----DP---SY-AANPVNRCYFCKSHL-HDTLRLLAQAQGYNHV 149

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      L   D    R       +                   +R PL +  M K  
Sbjct: 150 VDG------LNADDLADYRPGTQAARERG-----------------VRSPLAEVGMSKLE 186

Query: 200 VRDLAREMGLDIADKS 215
           VR L+R +GL   DK 
Sbjct: 187 VRQLSRHLGLSWWDKP 202


>gi|325104659|ref|YP_004274313.1| GMP synthase, large subunit [Pedobacter saltans DSM 12145]
 gi|324973507|gb|ADY52491.1| GMP synthase, large subunit [Pedobacter saltans DSM 12145]
          Length = 510

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 30/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +VV+A+SGGVDSSV A LL +  G ++  V +     RK                   
Sbjct: 213 NDKVVLALSGGVDSSVAALLLHKAIGNNLYCVFVDNGLLRKNEFESVLESY--------- 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
              T+ ++    D +++F  A           G T           KF D+      L  
Sbjct: 264 --KTLGLNVKGVDAKDQFYAA---------LKGLTDPEKKRKAIGGKFIDIFDAEAHLIQ 312

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               LA G      +             +           +          +  PL  + 
Sbjct: 313 DVKWLAQGTIYPDVIESVSVNGGPSATIKSHHN-------VGGLPDFMKLKVVEPLRSLF 365

Query: 197 KESVRDLAREMGLD 210
           K+ VR + R +GL 
Sbjct: 366 KDEVRRVGRALGLP 379


>gi|212224002|ref|YP_002307238.1| Hypothetical thiI [Thermococcus onnurineus NA1]
 gi|212008959|gb|ACJ16341.1| Hypothetical thiI [Thermococcus onnurineus NA1]
          Length = 363

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 77/236 (32%), Gaps = 47/236 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVV +SGG+DS V A L+ + G ++I V                        +A+ V
Sbjct: 165 QGKVVVLLSGGIDSPVAAFLMMKRGAEIIAVHF------------------DQGKNAKNV 206

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +         +    +    I     ++     P   V           LS    L   
Sbjct: 207 VEK------TVEILNDYSPKDIELIVENHFEVLRPYVAV-----------LSRINMLEWT 249

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG----DM 195
            +     +  R       +    +     L +  S  L     + +  +RFP+      M
Sbjct: 250 CVLCKVAMLRRAAEIAREEGALGIVTGDSLGQVASQTLANLYFETMS-VRFPVHRPLLGM 308

Query: 196 KKESVRDLAREMGLDIADKSDSQDICF------VQQGKYFDVVKRINAGIALEGDI 245
            KE +  +ARE+G   A        C       V QGKY + +K I   +  EG I
Sbjct: 309 DKEEIVKIAREIGTYQAFLEYPYCDCPFRPERVVTQGKYGEFLK-ILDILEKEGII 363


>gi|168177436|ref|ZP_02612100.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226947327|ref|YP_002802418.1| hypothetical protein CLM_0147 [Clostridium botulinum A2 str. Kyoto]
 gi|182670391|gb|EDT82365.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226842808|gb|ACO85474.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A2
           str. Kyoto]
          Length = 268

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 46/228 (20%)

Query: 19  KDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD++ V VA SGGVDS+    LL +   + +G      ++  +           ++ +AR
Sbjct: 15  KDLKSVAVAFSGGVDST----LLLKAAKEALG------DNAISITIVSPYIPKWEIREAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + D I +  Y  +           P      +      C  C ++V F+ +  + R+ G
Sbjct: 65  ELVDKIGIKSYFVEV----------PMLEEIRS-NQEDRCYICKKSV-FNKIKDLAREKG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +  G          DD K  R   R +                 L +         K
Sbjct: 113 IKYIVDG-------TNEDDTKDYRPGMRALKEL--------DVKSPLLDNSI------NK 151

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
           E +R L++E+ LD  DK      C + +  Y   +K  +     + ++
Sbjct: 152 EEIRVLSKELRLDTWDKP--AYACLLSRIPYNQKIKEKDLDRIEKAEV 197


>gi|167630843|ref|YP_001681342.1| nad+ synthetase [Heliobacterium modesticaldum Ice1]
 gi|167593583|gb|ABZ85331.1| nad+ synthetase [Heliobacterium modesticaldum Ice1]
          Length = 552

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VV +SGG+DS+V   L     G + V+G+++                +   V D+R 
Sbjct: 298 TKAVVGLSGGIDSAVTCCLAAEALGAENVLGISM-----------PSPYSSMGSVEDSRL 346

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           +   + V   V    + +   +       +  G       + N    ++ + L++ + + 
Sbjct: 347 LAANLGVPFKVIPIADIYHAYLF--TLEEHFEGR-KADVTEENLQARIRGNMLMAFSNKF 403

Query: 137 GADVLATG 144
           G  +L+TG
Sbjct: 404 GHLLLSTG 411


>gi|325299934|ref|YP_004259851.1| Argininosuccinate synthase [Bacteroides salanitronis DSM 18170]
 gi|324319487|gb|ADY37378.1| Argininosuccinate synthase [Bacteroides salanitronis DSM 18170]
          Length = 401

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   EKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSAEQLKKNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYAKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GA  +A G
Sbjct: 111 EIGAHAIAHG 120


>gi|240849849|ref|YP_002971237.1| GMP synthase [Bartonella grahamii as4aup]
 gi|240266972|gb|ACS50560.1| GMP synthase [Bartonella grahamii as4aup]
          Length = 518

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 69/196 (35%), Gaps = 38/196 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV+  +SGGVDSSVVA LL       IG  +T  L +     K +               
Sbjct: 223 RVICGLSGGVDSSVVAVLLHEA----IGDQLTCILVDHGLMRKNEAEEVLTLFR------ 272

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--- 136
            D  N+     +  + F NA           GET     +  R       + V  +    
Sbjct: 273 -DHYNIELIHVNAADIFLNA---------LEGET---DPEKKRKTIGRLFIEVFEEETKK 319

Query: 137 --GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             GA+ LA G  +   +        + +  +           +    +Q    L  PL +
Sbjct: 320 IGGAEFLAQG-TLYPDVIESVSAIGKTVTIKSHHN-------VGGLPEQMNMQLVEPLRE 371

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L RE+GL 
Sbjct: 372 LFKDEVRLLGRELGLP 387


>gi|256829264|ref|YP_003157992.1| PP-loop domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578440|gb|ACU89576.1| PP-loop domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 57/232 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D R+++A+SGG DS  +A  LK  GY++ G+ + L     +               A R 
Sbjct: 47  DDRILIAISGGKDSLALAWQLKDLGYNIEGLHIDLGIPESS---------PIARSYAERF 97

Query: 80  CDTINVSHYVFDYEER------FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           C    +  +V +  +        +  V  P             C  C +T ++       
Sbjct: 98  CAMGEIPLHVIETAKLGLAMCDVKRRVKRPI------------CSVCGQTKRY-LFNKFA 144

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ++ G  VLATGH +       DD   R     M   ++   DQ   + A  ++       
Sbjct: 145 QENGFTVLATGHNL-------DDETSRLFANVMRWDVEFLSDQGPVMPA--EKGFAKKVK 195

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           PL  +                  + ++ ++CF+    Y       ++  +  
Sbjct: 196 PLFRLT-----------------EFETANLCFLAGIDYGYAPCPYSSKASFP 230


>gi|189463254|ref|ZP_03012039.1| hypothetical protein BACCOP_03971 [Bacteroides coprocola DSM 17136]
 gi|189429984|gb|EDU98968.1| hypothetical protein BACCOP_03971 [Bacteroides coprocola DSM 17136]
          Length = 402

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   EKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKQNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYAKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GA  +A G
Sbjct: 111 EIGAHAIAHG 120


>gi|269126391|ref|YP_003299761.1| argininosuccinate synthase [Thermomonospora curvata DSM 43183]
 gi|268311349|gb|ACY97723.1| argininosuccinate synthase [Thermomonospora curvata DSM 43183]
          Length = 400

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L    G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAEQTGGEVIAV------------AVDVGQGGEDLEVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  E F +   VP   + A      P V   +R +    L +  ++ G 
Sbjct: 52  LACGAVEAVVVDAREEFASDFCVPALQANALYMDRYPLVSALSRPLIVKHLAAAAKEFGG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TAVAHG 117


>gi|163852348|ref|YP_001640391.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylobacterium extorquens PA1]
 gi|163663953|gb|ABY31320.1| GMP synthase, large subunit [Methylobacterium extorquens PA1]
          Length = 521

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 41/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V+  +SGGVDSSV A L+    G  +  V      ++L    +                
Sbjct: 225 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRLGEGDEV--------------- 269

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            R   D  N+       ++ F      V  P       G      V      K       
Sbjct: 270 VRLFRDHYNIPLVHVQAQDLFIGALEGVDDPEVKRKTIGRLF-IDVFEAEAGKIG----- 323

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GA  LA G      +          +  +           +    ++    L  PL
Sbjct: 324 ----GAAFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPERMNMKLVEPL 372

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L +E+GL 
Sbjct: 373 RELFKDEVRLLGKELGLP 390


>gi|161485685|ref|NP_632061.2| argininosuccinate synthase [Methanosarcina mazei Go1]
 gi|24211497|sp|Q8Q0U5|ASSY_METMA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 394

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V +A SGG+D+SV   +LK   GYD VI +          S   G         DA+ 
Sbjct: 3   KKVALAYSGGLDTSVCIPILKEKYGYDEVITI----------SVDVGQPEEEIRKADAK- 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I+  HY  D +E F    I P   +    E  +      R +    ++   ++ GA
Sbjct: 52  -AQKISNKHYTIDAKEEFVRDYIFPLIKANGNYEGYVMGTSVARPLIAKKVVEAAKKEGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G                   C       DQ  F     Q  +  +  P+ +M   
Sbjct: 111 IALAHG-------------------CTGK--GNDQLRFEAVFRQTDMD-VIAPMREMNLT 148

Query: 199 SVRDL--AREMGLDIADKS 215
              ++  A+E G+ +    
Sbjct: 149 REWEINYAKEHGIPVEATK 167


>gi|289423312|ref|ZP_06425120.1| GMP synthase [Peptostreptococcus anaerobius 653-L]
 gi|289156243|gb|EFD04900.1| GMP synthase [Peptostreptococcus anaerobius 653-L]
          Length = 511

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 41/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + + A+SGGVDSSV AAL+ +  G ++  V     +     K +G         D  R
Sbjct: 215 DKKALCALSGGVDSSVAAALMHKAIGKNLTCVF---VDHGLLRKNEGD--------DVER 263

Query: 79  VC-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVT 133
           +  +   ++    + E+RF             AG T  P  +  R +            +
Sbjct: 264 IFREKFGMNLVRVNAEDRFLGK---------LAGVT-EP--EAKRKIIGEEFIRVFEEES 311

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFP 191
            +LG  D L  G        V + G       +           +    +     ++  P
Sbjct: 312 HKLGKMDFLVQG---TIYPDVIESGLGDSATIKSHHN-------VGGLPEDVDFQEIIEP 361

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+G++
Sbjct: 362 LRELFKDEVRKIGLELGIE 380


>gi|224026530|ref|ZP_03644896.1| hypothetical protein BACCOPRO_03287 [Bacteroides coprophilus DSM
           18228]
 gi|224019766|gb|EEF77764.1| hypothetical protein BACCOPRO_03287 [Bacteroides coprophilus DSM
           18228]
          Length = 402

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VVVA SGG+D+S  V  L K  GY+V                     + + +    
Sbjct: 3   EKKKVVVAFSGGLDTSFTVMYLAKEKGYEVYAA-----------CANTGGFSPEQLKQNE 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTR 134
                +  V +   D  + +    +              P    +  + F  L       
Sbjct: 52  ENAYKLGAVKYVTLDVTQEYYAKSLKYMIFGNVLRNGTYPISVSSERI-FQALAIARYAN 110

Query: 135 QLGADVLATG 144
           ++GA  +A G
Sbjct: 111 EIGAHAIAHG 120


>gi|167770355|ref|ZP_02442408.1| hypothetical protein ANACOL_01698 [Anaerotruncus colihominis DSM
           17241]
 gi|167667677|gb|EDS11807.1| hypothetical protein ANACOL_01698 [Anaerotruncus colihominis DSM
           17241]
          Length = 510

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 30/191 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGGVDSSV AALL R  G  +  +     +     K +G         +     
Sbjct: 217 KVLLALSGGVDSSVAAALLSRAVGKQLTCIF---VDHGLMRKNEGD--------EVEAAF 265

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
              ++     +  ERF   +                 +     ++        +++G  D
Sbjct: 266 ADRDIHFVRVNAGERFLGKLAGVDDPERKRK------IIGEEFIRV--FEEEAKKIGHVD 317

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +  G            +    D   F           L F      K+ 
Sbjct: 318 YLAQGTIYPDVIESGAGDAAVIKSHHNVGGLPDYVDFKEIVEPL---RLLF------KDE 368

Query: 200 VRDLAREMGLD 210
            R L RE+GL 
Sbjct: 369 TRALGRELGLP 379


>gi|330444576|ref|YP_004377562.1| GMP synthase [Chlamydophila pecorum E58]
 gi|328807686|gb|AEB41859.1| GMP synthase [Chlamydophila pecorum E58]
          Length = 513

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 44/205 (21%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGSCC 68
           +K  ++ RV++ +SGGVDS++ AALL +  G  VI V      L+               
Sbjct: 213 EKVEENERVLLGLSGGVDSTITAALLHKALGERVICVLVDTGFLR--------------- 257

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
              +V +    C  +  +  + +  E F +    +  P       G+T +   +      
Sbjct: 258 -ENEVEEIASQCAFLKENLLIENASELFYSKLKGIHDPEEKRKLLGQTFIEVFES----- 311

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                 + + L    LA G      +     G   +++    +        +    +   
Sbjct: 312 ------IAKNLDIHWLAQGTIYSDVIESAHSGNSSQVIKSHHN--------VGGLPEHLH 357

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL  + K+ VR L R + L 
Sbjct: 358 LKLLEPLRYLFKDEVRTLGRSLSLS 382


>gi|283780585|ref|YP_003371340.1| GMP synthase, large subunit [Pirellula staleyi DSM 6068]
 gi|283439038|gb|ADB17480.1| GMP synthase, large subunit [Pirellula staleyi DSM 6068]
          Length = 522

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 69/206 (33%), Gaps = 37/206 (17%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +     D RV+  +SGGVDS+V AALL    Y  IG         K S         +
Sbjct: 216 LKMRAQIGDARVICGLSGGVDSAVTAALL----YRAIG--------PKLSCILVDNGLLR 263

Query: 72  DVYDARRVCD---TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
               A  + +         +V + E+RF  A   V  P A     G   + C        
Sbjct: 264 KDEQAGVIAEFTNHFKTDLHVVEGEKRFLEALAGVTEPQAKRKKIGYEFIEC-------- 315

Query: 126 FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                   +++  A  LA G      +  G          +           +     + 
Sbjct: 316 ---FKDEAKKIEDARFLAQGTLYPDVIESGAAPDGPAATIKLHHN-------VGGLPAEL 365

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL D+ K+ VR L  E+GL 
Sbjct: 366 GFELVEPLRDLFKDEVRKLGLELGLP 391


>gi|269217228|ref|ZP_06161082.1| NAD+ synthetase [Slackia exigua ATCC 700122]
 gi|269129365|gb|EEZ60450.1| NAD+ synthetase [Slackia exigua ATCC 700122]
          Length = 268

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D  +      VV+ +SGG+DSS+VA L      DV G               G       
Sbjct: 16  DFAEETSATDVVIGLSGGIDSSLVACLCC----DVFG-----SEHVHGVLMPGPYSTSHS 66

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + DA+ +   + +        E F+        S +  G   +   +     +   L+++
Sbjct: 67  LIDAQELARALGIETQQISINEPFQA--FGRILSEHMGGFGGVAAENTQARCRMIILMAI 124

Query: 133 TRQLGADVLATGHYIRS 149
           +   G  V+ TG+   +
Sbjct: 125 SNMTGWLVVNTGNRSEA 141


>gi|221633168|ref|YP_002522393.1| GMP synthase [Thermomicrobium roseum DSM 5159]
 gi|254800123|sp|B9L0W3|GUAA_THERP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221156021|gb|ACM05148.1| GMP synthase (glutamine-hydrolyzing) [Thermomicrobium roseum DSM
           5159]
          Length = 527

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 62/203 (30%), Gaps = 32/203 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +     RV++A+SGGVDSSV AAL+ R     IG      +               +
Sbjct: 221 EIRERVGKDRVLLALSGGVDSSVAAALIHRA----IG------DQLTPVFVDTGLLREGE 270

Query: 73  VYDARRV-CDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
               R V      +     D  +RF      V  P       GE                
Sbjct: 271 AETIREVFGRHFRMPLVAIDARQRFLVRLRGVSDPEQKRRLIGEEF-----------VRV 319

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              + R  G    LA G      +     G  R                +    Q    +
Sbjct: 320 FEEIARSQGPFRFLAQGTLYPDVIESAAPGASRTAAKIKTHHN------VGGLPQDLEFE 373

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + R +GL 
Sbjct: 374 LLEPLRYLFKDEVRAIGRLLGLP 396


>gi|221195451|ref|ZP_03568506.1| GMP synthase [glutamine-hydrolyzing] [Atopobium rimae ATCC 49626]
 gi|221184638|gb|EEE17030.1| GMP synthase [glutamine-hydrolyzing] [Atopobium rimae ATCC 49626]
          Length = 532

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 64/204 (31%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + RV++A+SGGVDSSVVAAL+ R  G  +  V          +         +
Sbjct: 215 EIRQKVGNGRVILALSGGVDSSVVAALVHRAIGDQLTCVF--------VNHGMLRKGEPE 266

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            V    R     NV       EER+      V  P       G              +  
Sbjct: 267 MVEQVFR--TQFNVPLVHVHAEERYAKLLAGVTEPEQKRRLIGTEF-----------WKV 313

Query: 129 LLSVTRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                ++L G   LA G  Y             +    +          F          
Sbjct: 314 FFEEAQKLDGVQFLAQGTIYPDIIESGARKTGGKASTIKSHHNL---IPFPEGVHFD--- 367

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL    K+ VR+L   +GL 
Sbjct: 368 -LIEPLDHFFKDEVRELGVSLGLP 390


>gi|256005388|ref|ZP_05430352.1| GMP synthase, large subunit [Clostridium thermocellum DSM 2360]
 gi|281417096|ref|ZP_06248116.1| GMP synthase, large subunit [Clostridium thermocellum JW20]
 gi|255990614|gb|EEU00732.1| GMP synthase, large subunit [Clostridium thermocellum DSM 2360]
 gi|281408498|gb|EFB38756.1| GMP synthase, large subunit [Clostridium thermocellum JW20]
 gi|316940865|gb|ADU74899.1| GMP synthase, large subunit [Clostridium thermocellum DSM 1313]
          Length = 511

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 41/217 (18%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           M       +NS+   +   D +V+ A+SGGVDSSV A L+ +  G  +  +     +   
Sbjct: 198 MASFIEHSINSI--REKVGDKKVLCALSGGVDSSVAAVLVHKAVGKQLTCIF---VDHGL 252

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
             K +G                  ++S    + E+RF              G T     +
Sbjct: 253 LRKYEGDQVEEVFK-------KQFDISLIRVNAEDRFLEK---------LKGVT---DPE 293

Query: 120 CNRTVK----FSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R +             +++G  D L  G        V + G     + +         
Sbjct: 294 RKRKIIGEEFIRVFEEEAKKIGTVDFLVQG---TIYPDVIESGVGDAAVIKSHHN----- 345

Query: 175 YFLFATTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
             +          ++  PL  + K+ VR +  E+G+ 
Sbjct: 346 --VGGLPDYIDFKEIIEPLRSLFKDEVRKVGIELGIP 380


>gi|295402654|ref|ZP_06812599.1| GMP synthase, large subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112492|ref|YP_003990808.1| GMP synthase, large subunit [Geobacillus sp. Y4.1MC1]
 gi|294975311|gb|EFG50944.1| GMP synthase, large subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217593|gb|ADP76197.1| GMP synthase, large subunit [Geobacillus sp. Y4.1MC1]
          Length = 512

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------AES 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E F+  VI       F S       P     +  N  +  F D  
Sbjct: 263 VMKT---------FREGFQMNVIKVDAKERFLSKLKGVIDPEQKRKIIGNEFIYVFDD-- 311

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +     L  
Sbjct: 312 EAAKLEGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+GL 
Sbjct: 362 PLKTLFKDEVRALGTELGLP 381


>gi|307721702|ref|YP_003892842.1| GMP synthase (glutamine-hydrolyzing) [Sulfurimonas autotrophica DSM
           16294]
 gi|306979795|gb|ADN09830.1| GMP synthase (glutamine-hydrolyzing) [Sulfurimonas autotrophica DSM
           16294]
          Length = 516

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+  +SGGVDSSVVAA+L    Y+ IG  L          RKG     + V +  ++
Sbjct: 219 DAKVLCGLSGGVDSSVVAAML----YEAIGDQLIPVFVDNGLLRKGE---REQVEEVFKI 271

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
              +       D  + F   +             G T              +     ++ 
Sbjct: 272 --NLKAPLITVDAVDNFLGKLAGVSDPEQKRKIIGHTF-----------IEEFEKEAKKH 318

Query: 137 -GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            G   LA G  Y      +  +G        P ++ +   + +         +L  PL +
Sbjct: 319 DGIKFLAQGTLYPDVIESISVNG--------PSEVIKSH-HNVGGLPDWMDFELIEPLRE 369

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 370 LFKDEVRKIGFELGLP 385


>gi|327399703|ref|YP_004340572.1| NH(3)-dependent NAD(+) synthetase [Hippea maritima DSM 10411]
 gi|327182332|gb|AEA34513.1| NH(3)-dependent NAD(+) synthetase [Hippea maritima DSM 10411]
          Length = 278

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 54/207 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDAR 77
           + V+ +SGG+DS+VVA L K   G + V  + +  +L +                V DA 
Sbjct: 35  KAVLGLSGGIDSAVVAYLAKEALGKENVYAILMPYKLSSKES-------------VEDAL 81

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +V     +++ +F+  +   +A I  F        G            ++   L   +  
Sbjct: 82  KVVKDTGINYKIFEITKP-ADAYIDQFDDIDKLRKGNIFA-------RMRMITLFDHS-- 131

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      +   L VG   K   ++              + T    +     P+GD+
Sbjct: 132 ----------SLYKALVVGTSNKTELLL-------------GYGTWYGDMASSLNPIGDL 168

Query: 196 KKESVRDLAREMGLD--IADKSDSQDI 220
            K  +  LAR   +   I +K  S D+
Sbjct: 169 YKNQIYQLARYFKVPESIIEKKPSADL 195


>gi|297587726|ref|ZP_06946370.1| GMP synthase (glutamine-hydrolyzing) [Finegoldia magna ATCC 53516]
 gi|297574415|gb|EFH93135.1| GMP synthase (glutamine-hydrolyzing) [Finegoldia magna ATCC 53516]
          Length = 510

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D +V++A+SGGVDSSV A+LL R  G ++  V     +     K +G       
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCASLLSRAIGKNLTCVF---VDHGLMRKNEGDEVEAAF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D         ++    D ++RF + +                 +     ++       
Sbjct: 266 KND--------ELNFVRVDAKDRFLDKLKGISDPEQKRK------IIGEEFIRV--FEDE 309

Query: 133 TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++G  D LA G        V + G+    + +           +          DL  
Sbjct: 310 AKKIGSVDFLAQG---TIYPDVIESGQGDASVIKSHHN-------VGGLPDVVDFKDLIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR L  E+ + 
Sbjct: 360 PLRDLFKDEVRRLGLELEMP 379


>gi|225075889|ref|ZP_03719088.1| hypothetical protein NEIFLAOT_00912 [Neisseria flavescens
           NRL30031/H210]
 gi|224952835|gb|EEG34044.1| hypothetical protein NEIFLAOT_00912 [Neisseria flavescens
           NRL30031/H210]
          Length = 322

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 21  VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D E +F             AG T     +  R +  ++ + V       + 
Sbjct: 71  NLGVKVIHVDAEGQFIAK---------LAGVT---DPEKKRKIIGAEFIEVFDAEEKKLT 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                 +  +Y            +   ++   +  +    +     L  PL D+ K+ VR
Sbjct: 119 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN--VGGLPENMKLKLLEPLRDLFKDEVR 176

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 177 ELGVALGLP 185


>gi|254440061|ref|ZP_05053555.1| argininosuccinate synthase [Octadecabacter antarcticus 307]
 gi|198255507|gb|EDY79821.1| argininosuccinate synthase [Octadecabacter antarcticus 307]
          Length = 410

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 63/222 (28%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKVTAPKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNR 122
           +  AR   + + +     Y+ D  E F    + P   +       Y  G +    +   R
Sbjct: 48  LEPARAKAELMGIPPENIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR 107

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFA 179
                 L+ +  ++GAD +A G                           DQ  F    +A
Sbjct: 108 ------LVEIAEEVGADAVAHG---------------------ATGKGNDQVRFELAAYA 140

Query: 180 TTQQQLCDLRFP-----LGDMKKESVRDLAREMGLDIADKSD 216
                   +  P     L    K  + + A E  + +A    
Sbjct: 141 LNPDI--KVIAPWREWDLSSRTK--LLEFAEEHQIPVAKDKR 178


>gi|156551429|ref|XP_001604269.1| PREDICTED: similar to gmp synthase [Nasonia vitripennis]
          Length = 710

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 38/223 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAG 70
           ++ +   + +V++ +SGGVDS+V AALL +      VI V +          RKG     
Sbjct: 233 EIRETVGNSKVLLLVSGGVDSTVCAALLHKALNKDQVIAVHINN-----GFMRKGETPLV 287

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRN---------AVIVPFASSY----AAGETPLPC 117
           +     + +   I +   V +    F N         +++               T + C
Sbjct: 288 E-----QSLA-QIGIKLQVINATHTFLNGTTTIPASASIVNKTNREVNIFPKPKLTKMLC 341

Query: 118 VDCN----RTVKFSDLLSVTRQLGADVLATGH--YIRSRLYVGDDGKRRRIMCRPM-DLE 170
              N    R +     + V  +  A++       ++       D  +    +     D  
Sbjct: 342 TTTNPEEKRKIIGDVFVQVANETIAELGLKPEEVFLGQGTLRPDLIESASSLASGKADAI 401

Query: 171 R---DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +   + S  +     +    +  PL D  K+ VR L  ++GL 
Sbjct: 402 KTHHNDSELVRELRAK--GRVIEPLKDFHKDEVRQLGCDLGLP 442


>gi|91775492|ref|YP_545248.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylobacillus flagellatus KT]
 gi|123254665|sp|Q1H280|GUAA_METFK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91709479|gb|ABE49407.1| GMP synthase (glutamine-hydrolyzing) [Methylobacillus flagellatus
           KT]
          Length = 526

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L  + +  +  G           
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDNGLLRLNEAEQVMETFG----------- 273

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----S 131
                 + V     D   +F             +G       +  R +   + +      
Sbjct: 274 ----KNLGVKVIHVDASAKFLGD---------LSGVN---DPEAKRKIIGREFVEVFQQE 317

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +   A  LA G      +       ++    +           +          L  P
Sbjct: 318 AAKLPQAKWLAQGTIYPDVIESAGAKTKKAHTIKSHHN-------VGGLPDTLKLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +GL 
Sbjct: 371 LRELFKDEVRELGIALGLP 389


>gi|319789152|ref|YP_004150785.1| GMP synthase, large subunit [Thermovibrio ammonificans HB-1]
 gi|317113654|gb|ADU96144.1| GMP synthase, large subunit [Thermovibrio ammonificans HB-1]
          Length = 518

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 67/200 (33%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V+ A+SGGVDSSVVAALL R     IG   QLY     +               +  
Sbjct: 220 DKNVICALSGGVDSSVVAALLHRA----IGD--QLYPIFVDTGLLRKGERESVERTFK-- 271

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
            +  ++    V D  + F   +             G T +                  ++
Sbjct: 272 -EKFHMKNFKVIDASDLFLERLKGVTDPEQKRKIIGHTFIEV-----------FEKAAKE 319

Query: 136 L-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  A+ LA        I S    G     +                +    ++    L  
Sbjct: 320 IPNAEFLAQGTLYPDVIESVSVKGPSATIKSHHN------------VGGLPERLNFKLIE 367

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L +E+GL 
Sbjct: 368 PLRELFKDEVRELGKELGLP 387


>gi|317488593|ref|ZP_07947138.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325831967|ref|ZP_08165064.1| GMP synthase (glutamine-hydrolyzing) [Eggerthella sp. HGA1]
 gi|316912335|gb|EFV33899.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486288|gb|EGC88740.1| GMP synthase (glutamine-hydrolyzing) [Eggerthella sp. HGA1]
          Length = 535

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 32/196 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSSVVAAL  +  G  +  V +        +         ++V D     
Sbjct: 223 RVILGLSGGVDSSVVAALCAKAIGKQLTCVFI--------NHGLLRKNEPEEVEDV--FT 272

Query: 81  DTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +V       E+R+      V+ P       G              + +  +V  +L 
Sbjct: 273 KQFDVDFVHVHAEDRYAALLADVVEPEQKRRIIGSQF-----------WKEFFAVAEELA 321

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS---YFLFATTQQQLCDLRFPLGD 194
            +     +  +  +Y        R         +       F           L  PL  
Sbjct: 322 ENGRPVKYLAQGTIYPDIIESGARKTGGKASTIKSHHNLIPFPDGVHFD----LIEPLDH 377

Query: 195 MKKESVRDLAREMGLD 210
             K+ VR L   +GL 
Sbjct: 378 FFKDEVRALGTTLGLP 393


>gi|114327814|ref|YP_744971.1| GMP synthase [Granulibacter bethesdensis CGDNIH1]
 gi|114315988|gb|ABI62048.1| GMP synthase (glutamine-hydrolyzing) [Granulibacter bethesdensis
           CGDNIH1]
          Length = 522

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV+  +SGGVDS+V A L+    G  +  +                  A Q +   R 
Sbjct: 224 EGRVICGLSGGVDSTVAAVLIHEAIGDQLTCIF-------VDHGLLRQSEAEQVLAMFR- 275

Query: 79  VCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             D  N+     D  + F      V  P       G+  +   +              + 
Sbjct: 276 --DRFNIKLVHRDASDLFLGALEGVSDPEVKRKTIGKLFIDVFEE----------EAAKI 323

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD LA G      +          +  +           +    ++    L  PL ++
Sbjct: 324 GGADFLAQGTLYPDVIESISFTGGPSVTIKSHHN-------VGGLPERMRMKLVEPLREL 376

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 377 FKDEVRALGLELGLP 391


>gi|125972896|ref|YP_001036806.1| GMP synthase [Clostridium thermocellum ATCC 27405]
 gi|259647675|sp|A3DCD4|GUAA_CLOTH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|125713121|gb|ABN51613.1| GMP synthase (glutamine-hydrolyzing) [Clostridium thermocellum ATCC
           27405]
          Length = 511

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 41/217 (18%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           M       +NS+   +   D +V+ A+SGGVDSSV A L+ +  G  +  +     +   
Sbjct: 198 MASFIEHSINSI--REKVGDKKVLCALSGGVDSSVAAVLVHKAVGKQLTCIF---VDHGL 252

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
             K +G                  ++S    + E+RF              G T     +
Sbjct: 253 LRKYEGDQVEEVFK-------KQFDISLIRVNAEDRFLEK---------LKGVT---DPE 293

Query: 120 CNRTVK----FSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R +             +++G  D L  G        V + G     + +         
Sbjct: 294 RKRKIIGEEFIRVFEEEAKKIGTVDFLVQG---TIYPDVIESGVGDAAVIKSHHN----- 345

Query: 175 YFLFATTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
             +          ++  PL  + K+ VR +  E+G+ 
Sbjct: 346 --VGGLPDYIDFKEIIEPLRSLFKDEVRKVGIELGIP 380


>gi|311029179|ref|ZP_07707269.1| GMP synthase [Bacillus sp. m3-13]
          Length = 512

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 34/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-- 76
           D +V+ A+SGGVDSSVVA L+ +  G  +  +                    +D  DA  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF------------VDHGLLRKDEADAVM 264

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +   +  N++    D ++RF N +                 +  N  +          +L
Sbjct: 265 KTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRK------IIGNEFIYV--FDDEASKL 316

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G D LA G        + + G       +           +    +     L  PL  +
Sbjct: 317 EGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFQLIEPLNTL 366

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+G+ 
Sbjct: 367 FKDEVRALGTELGIP 381


>gi|302550220|ref|ZP_07302562.1| argininosuccinate synthase [Streptomyces viridochromogenes DSM
           40736]
 gi|302467838|gb|EFL30931.1| argininosuccinate synthase [Streptomyces viridochromogenes DSM
           40736]
          Length = 397

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R      L++  R+ GA
Sbjct: 52  LACGAVEAEVADARDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKHLVAAARKHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM-- 195
             +A G                   C       DQ  F               P+ D   
Sbjct: 112 GTVAHG-------------------CTGK--GNDQVRFEAGIVALAPDLKCIAPVRDYAM 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++       + GL IA    S
Sbjct: 151 TRDKAIAFCEQKGLPIATTKKS 172


>gi|307150920|ref|YP_003886304.1| Queuosine synthesis-like protein [Cyanothece sp. PCC 7822]
 gi|306981148|gb|ADN13029.1| Queuosine synthesis-like protein [Cyanothece sp. PCC 7822]
          Length = 272

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 58/206 (28%)

Query: 19  KDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+M R ++A SGGVDS++VA +     YDV+G      +   A          +++ DA+
Sbjct: 14  KEMDRALIAYSGGVDSTLVAKIA----YDVLG------DRALAVTAVSPSLLPEELEDAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE---TPLP---CVDCNRTVKFSDLLS 131
               +I ++H                   ++       T  P   C  C   +    L  
Sbjct: 64  IQAASIGIAHE---------------LIQTHEMENPNYTSNPVNRCYFCKSEL-HDTLKP 107

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +    G   +  G         GDD +  R   R                  Q   +R P
Sbjct: 108 LALGRGYPYIVDG-------VNGDDLQDYRPGIRA----------------AQERGVRSP 144

Query: 192 LGD--MKKESVRDLAREMGLDIADKS 215
           L +  + K  VR L++ +GL   DK 
Sbjct: 145 LAEAGITKAQVRQLSQYLGLPWWDKP 170


>gi|307545333|ref|YP_003897812.1| argininosuccinate synthase [Halomonas elongata DSM 2581]
 gi|307217357|emb|CBV42627.1| argininosuccinate synthase [Halomonas elongata DSM 2581]
          Length = 406

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVKWLQET-YDCEVVTF-----------TADIGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V   Y+ D  E F    + P           Y  G +        R +    L+ +
Sbjct: 53  EALGVKEIYIEDLREEFVRDYVYPMFRANTIYEGEYLLGTSIA------RPLITKRLVEI 106

Query: 133 TRQLGADVLATG 144
             Q GAD ++ G
Sbjct: 107 ANQTGADAISHG 118


>gi|170754940|ref|YP_001779993.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
 gi|169120152|gb|ACA43988.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
          Length = 288

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    CD +N+   +F+  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCDYLNIPINLFN-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|153938765|ref|YP_001389708.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|152934661|gb|ABS40159.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|295317796|gb|ADF98173.1| PP-loop family protein [Clostridium botulinum F str. 230613]
          Length = 288

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    CD +N+   +F+  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCDYLNIPINLFN-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|218134933|ref|ZP_03463737.1| hypothetical protein BACPEC_02838 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990318|gb|EEC56329.1| hypothetical protein BACPEC_02838 [Bacteroides pectinophilus ATCC
           43243]
          Length = 513

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         D     
Sbjct: 217 KVLCALSGGVDSSVAAVLLAKAVGKQLTCVF---VDHGLLRKDEGDEVEAVFGPDG---- 269

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-D 139
              +++    + +ERF   +                 +     ++        +++GA D
Sbjct: 270 -PYDLNFIRVNAQERFYEKLKG--VEEPERKRK----IIGEEFIRV--FEEEAKKIGAVD 320

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            L  G        V + G  +    +           +          ++  PL D+ K+
Sbjct: 321 YLVQG---TIYPDVIESGLGKSATIKSHHN-------VGGLPDYVDFKEIVEPLRDLFKD 370

Query: 199 SVRDLAREMGLD 210
            VR    E+G+ 
Sbjct: 371 EVRRAGLELGIP 382


>gi|227432364|ref|ZP_03914356.1| GMP synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351885|gb|EEJ42119.1| GMP synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 514

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSVV  LL R     IG  +T    +     K +             
Sbjct: 219 DKKVLLGLSGGVDSSVVGVLLHRA----IGDQLTSIFVDHGLLRKNEADQVMT------- 267

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
            +     ++    D +ERF + +                 +  N  ++        ++L 
Sbjct: 268 MLGGKFGLNIIKVDAQERFLDKLAGVSDPEQKRK------IIGNEFIQV--FNDEAKKLD 319

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G + LA G      +  G D  +     +           +    +     L  PL  + 
Sbjct: 320 GIEFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFQLIEPLNTLF 369

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  ++ + 
Sbjct: 370 KDEVRELGEKLNMP 383


>gi|52352404|gb|AAU43693.1| argininosuccinate synthase [uncultured archaeon GZfos26D8]
          Length = 388

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 34/191 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   LLK   GYD VI VT                  G D+ +A+ 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVT------------VDVGQPGDDIKEAKE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               ++ S+   D +E F    I P   +    E  +      R +    ++ V R+  A
Sbjct: 50  RGAKLSDSYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREEKA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A G         G+D  R   + R  DL+            ++L         + +E
Sbjct: 110 DAVAHG-----CTGKGNDQLRFDAVFRTTDLD-------VVAPMRELS--------LTRE 149

Query: 199 SVRDLAREMGL 209
             R  A E G+
Sbjct: 150 EERKYAAEHGI 160


>gi|325926475|ref|ZP_08187795.1| argininosuccinate synthase [Xanthomonas perforans 91-118]
 gi|325543124|gb|EGD14567.1| argininosuccinate synthase [Xanthomonas perforans 91-118]
          Length = 412

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+ + +T   S       KD  +V+A SGG+D+S     L+  GY V  V          
Sbjct: 1   MMSAASTNPESRLPTSGTKD--IVLAFSGGLDTSFCIPYLQERGYAVHTVF--------- 49

Query: 61  SKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                     ++     +    +   SH   D         + PF  +    +   P + 
Sbjct: 50  --ADTGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLV 107

Query: 120 CNRTVKFSDLLSVTRQLGADVLATG 144
            +R +     L    +LG  ++A G
Sbjct: 108 SDRYLIVDAALKRAEELGTRIIAHG 132


>gi|293401686|ref|ZP_06645828.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304944|gb|EFE46191.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 513

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 68/207 (32%), Gaps = 33/207 (15%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +    + K     +V++ +SGGVDSSVVAALL +     IG  L          RKG   
Sbjct: 204 MQVEQIRKTVGKDKVLLGLSGGVDSSVVAALLHKA----IGDQLICMFIDHGLLRKGE-- 257

Query: 69  AGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRT 123
                  A  V +T      V     D +ERF + +                     +  
Sbjct: 258 -------AESVMETFGREMNVHLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEE 310

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           VK      ++       LA G        V + G +     +           +    + 
Sbjct: 311 VK-----KISAGEDIKWLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPED 355

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL  + K+ VR L  E+GL 
Sbjct: 356 MQFQLIEPLNTLFKDEVRALGSELGLP 382


>gi|160890963|ref|ZP_02071966.1| hypothetical protein BACUNI_03408 [Bacteroides uniformis ATCC 8492]
 gi|270294278|ref|ZP_06200480.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481492|ref|ZP_07940557.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859184|gb|EDO52615.1| hypothetical protein BACUNI_03408 [Bacteroides uniformis ATCC 8492]
 gi|270275745|gb|EFA21605.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902338|gb|EFV24227.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 517

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL R  G ++  + +         ++        
Sbjct: 206 ELKEQLGNDRVILGLSGGVDSSVAAVLLHRAIGKNLTCIFV----DHGLLRKNEFKNVMH 261

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D       C  + ++    D  E+F              G T  P  +  R +   D + 
Sbjct: 262 DYE-----C--LGLNVIGVDASEKFFKD---------LEGVT-EP--EQKRKIIGRDFIE 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V     A  +    ++       D  +   I  + +    +    +    ++    L  P
Sbjct: 303 VFDA-EAHKITDARWLAQGTIYPDRIESLNITGKTIKSHHN----VGGLPEEMNLRLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LQWLFKDEVRRVGRELGMP 376


>gi|268323619|emb|CBH37207.1| conserved hypothetical protein, PP-loop family [uncultured
           archaeon]
          Length = 302

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 24/134 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-------ASKRKGSCCAGQDVY 74
           R+ VA+SGG DSS +  +LK           ++++ R        A            + 
Sbjct: 51  RIAVALSGGKDSSALLYMLKE----------KIFHDRNDLEFFAIAVDEGIKGFRSATLR 100

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASS-YAAGETPLPCVDCNRTVKFSDLLSVT 133
           +A RV   + +  +++ +   F             A G    PC  C   ++   L    
Sbjct: 101 NAERVAKELEIDCFIYSFAHEF-----GFTLDEIVAKGFDQAPCTFCG-VLRRRILDVKA 154

Query: 134 RQLGADVLATGHYI 147
           +++GA  + T H +
Sbjct: 155 KEMGATKVVTAHNL 168


>gi|148241148|ref|YP_001226305.1| GMP synthase [Synechococcus sp. RCC307]
 gi|147849458|emb|CAK26952.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus sp. RCC307]
          Length = 563

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 29/196 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D     
Sbjct: 260 KRVLLALSGGVDSSTLAFLLHKA----IGDQLTCMFIDQGFMRKGEPEFLVEFFD----- 310

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
              +++    +  ERF N           AG T     +  R +            +++L
Sbjct: 311 KRFHINVEYINARERFINK---------LAGIT---DPEEKRRIIGTEFIRVFEEESKRL 358

Query: 137 G-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  D LA G  Y       G +   +      + ++   +  +    +     L  PL  
Sbjct: 359 GPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLRR 416

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 417 LFKDEVRKVGRSLGLP 432


>gi|217976569|ref|YP_002360716.1| GMP synthase, large subunit [Methylocella silvestris BL2]
 gi|217501945|gb|ACK49354.1| GMP synthase, large subunit [Methylocella silvestris BL2]
          Length = 534

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 28/194 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDS+V A L+    G  +  V +     R+    +                
Sbjct: 233 RVLCGLSGGVDSAVAALLIFEAIGERLTCVFVDHGLLRQGEAEEVVTLFRGHY------- 285

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
              N+  +  + +  F                T +   +  R +      +   +  +++
Sbjct: 286 ---NIPLHHVEAKALF------------LGALTGVRDPEEKRKIIGRLFITAFEAEAKKI 330

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            AD      ++       D  +       P    +   + +    ++    L  PL ++ 
Sbjct: 331 AADGRGAPEFLAQGTLYPDVIESVSFSGGPSVTIKSH-HNVGGLPERMNMKLVEPLRELF 389

Query: 197 KESVRDLAREMGLD 210
           K+ VR L RE+GL 
Sbjct: 390 KDEVRALGRELGLP 403


>gi|311031504|ref|ZP_07709594.1| NAD+ synthetase [Bacillus sp. m3-13]
          Length = 246

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 47/195 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVA L+KR            +               +D   A  V ++ 
Sbjct: 25  IVGVSGGIDSAVVAHLIKRA-----------FPEDSLGVIMPCKSDPKDEEYALEVIESC 73

Query: 84  NVSHYVFDYEERF-------RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +SH   D  E            +       +    + L   +    ++ + L +V    
Sbjct: 74  GISHTTIDLSETHTVLFSAMEKQLKEK--GEWNEETSRLGDANTRARLRMTTLYAVANNY 131

Query: 137 GADVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  V+ T +       Y    G     +                           PL + 
Sbjct: 132 GYLVVGTDNAAEWHTGYFTKYGDGGVDLV--------------------------PLVNF 165

Query: 196 KKESVRDLAREMGLD 210
            K  VR++A+ +G+ 
Sbjct: 166 TKGEVREMAKVLGVP 180


>gi|224368988|ref|YP_002603152.1| GMP synthase [Desulfobacterium autotrophicum HRM2]
 gi|223691705|gb|ACN14988.1| GuaA1 [Desulfobacterium autotrophicum HRM2]
          Length = 509

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSV A L+ R     IG  L          R       +     + +
Sbjct: 211 DKKVIMGLSGGVDSSVAALLIHRA----IGKNLYCIFVDNGLLRNNERTNLE-----KSL 261

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
              ++++    D    F +           AG   +   +  R +             ++
Sbjct: 262 TTHLDMNIRFVDARRLFLDQ---------LAG---VEDPEKKRKIIGNLFIDVFEDEAKK 309

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GA+ L  G      +           + +           +    ++    L  PL  
Sbjct: 310 IDGAEFLGQGTLYPDIIESKSAFGGPTSIIKSHHN-------VGGLPEKMKLKLVEPLQF 362

Query: 195 MKKESVRDLAREMGL 209
           + K+ VR L  E+GL
Sbjct: 363 LFKDEVRKLGLELGL 377


>gi|312136982|ref|YP_004004319.1| tRNA methyl transferase [Methanothermus fervidus DSM 2088]
 gi|311224701|gb|ADP77557.1| tRNA methyl transferase [Methanothermus fervidus DSM 2088]
          Length = 338

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           T L   ++     + +V+VA+SGGVDSS    ++K  G+DV  VT               
Sbjct: 118 TELPLFNIPNFETNEKVLVALSGGVDSSFSLVVMKYLGFDVEAVT---------VDPGPM 168

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                   +  ++C T+ V H       ++       F      G    PC  C+
Sbjct: 169 ILPKIFKKNIEKLCSTLEVKH-------KYIKTDFSNFIEECLKGR-FHPCGRCS 215


>gi|254670895|emb|CBA07439.1| GMP synthase [Neisseria meningitidis alpha153]
 gi|325204871|gb|ADZ00325.1| GMP synthase [Neisseria meningitidis M01-240355]
          Length = 521

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G     + V D      
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEG-----KMVMD--MFAR 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--TRQL--- 136
            + V     D E +F             AG T     +  R +  ++ + V    +    
Sbjct: 270 NLGVKVIHVDAEGQFMAK---------LAGVT---DPEKKRKIVGAEFIEVFDAEEKKLT 317

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL D+ 
Sbjct: 318 NAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHN-------VGGLPENMKLKLLEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 371 KDEVRELGVALGLP 384


>gi|253681080|ref|ZP_04861883.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum D str.
           1873]
 gi|253562929|gb|EES92375.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum D str.
           1873]
          Length = 512

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V     +     K +G             
Sbjct: 217 DKKVLCALSGGVDSSVAAVLVHKAIGKQLTCVF---VDHGLLRKDEGDQVEAIFK----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + EERF   +                 +     ++         +LG 
Sbjct: 269 --KQFDMNLIRVNAEERFLGKLKGVSDPETKRK------IIGEEFIRV--FEEEAGKLGQ 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G       +           +    +     L  PL ++ K
Sbjct: 319 IDFLVQG---TIYPDVVESGTNTSATIKSHHN-------VGGLPEDMQFSLIEPLRELFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 369 DEVRAVGEELGIP 381


>gi|84387649|ref|ZP_00990666.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio splendidus 12B01]
 gi|84377494|gb|EAP94360.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio splendidus 12B01]
          Length = 517

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L  R  G  +  V      L+L    +     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDNGLLRLNEGEQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF         ++      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LNALEGEAEPEAKRKIIGHVFVDIFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|323704377|ref|ZP_08115956.1| Queuosine synthesis-like protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536443|gb|EGB26215.1| Queuosine synthesis-like protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 275

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGGVDS+     L +  YDV      L +   A     S    ++  +A+ +   I
Sbjct: 21  VIAFSGGVDST----FLAKVCYDV------LKDRCVAVTATSSTYPQREFKEAQELAKQI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            + H +   EE                G +  P   C  C   + FS L +V  + G + 
Sbjct: 71  GIRHRIIRSEELEIE------------GFSKNPIDRCYYCKSEL-FSKLKNVAEEEGIEY 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +  G          D G  R       +L                  ++ PL      K 
Sbjct: 118 VLDG------TNYDDTGDFRPGRRAARELG-----------------VKSPLLECGFTKN 154

Query: 199 SVRDLAREMGLDIADKS 215
            +R++++ +GL   +K 
Sbjct: 155 DIREMSKILGLPTWNKP 171


>gi|301309867|ref|ZP_07215806.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3]
 gi|300831441|gb|EFK62072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3]
          Length = 438

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D  V+V +SGG DS  VA L  L R GY  I +    +   + S R        D   A
Sbjct: 17  EDRPVLVGLSGGADS--VALLGVLVRLGYPCIALHCNFHLRGEESDR--------DEAFA 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +++ V  +  D+        I      + + E         R ++++    +  +L
Sbjct: 67  CEFAESLEVPFHKIDF------DTISYAGEKHLSIE------MAARELRYAWFEEMRERL 114

Query: 137 GADVLATGHY 146
           G   +A  H+
Sbjct: 115 GGQAIAVAHH 124


>gi|294675765|ref|YP_003576380.1| argininosuccinate synthase [Rhodobacter capsulatus SB 1003]
 gi|294474585|gb|ADE83973.1| argininosuccinate synthase [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +VI  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVITFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
             + + +     ++ D  E F    + P   + A  E          R +    L+ + +
Sbjct: 51  KAELMGIKKENIHIVDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKHLVEIAQ 110

Query: 135 QLGADVLATG 144
           + GAD +A G
Sbjct: 111 KHGADAVAHG 120


>gi|299143856|ref|ZP_07036936.1| NAD+ synthetase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518341|gb|EFI42080.1| NAD+ synthetase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 246

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 45/198 (22%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDARRVCDTIN 84
            MSGG+DS+V+AA        V     +L     +      C +  +D  DAR + + ++
Sbjct: 38  GMSGGIDSAVIAA--------VS----KLAFPDTSLGIIMPCESAYEDEEDARLIAEVLD 85

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +     D  + ++  +   F SS     +     +    ++   L    + LG   L  G
Sbjct: 86  LKIQKVDLTDTYKTYLESSFFSSNRMARS-----NIKPRLRMLTLYYYAQDLG--YLVCG 138

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
               S  Y+G          +  D   D                  PL    K+ V DLA
Sbjct: 139 SSNASEFYIG-------YYTKFGDSGAD----------------LLPLVGFLKDEVFDLA 175

Query: 205 REMGLD--IADKSDSQDI 220
           RE+G+   I DK  S  +
Sbjct: 176 RELGIPEKIIDKKPSAGL 193


>gi|206901586|ref|YP_002251252.1| GMP synthase (glutamine-hydrolyzing) [Dictyoglomus thermophilum
           H-6-12]
 gi|206740689|gb|ACI19747.1| GMP synthase (glutamine-hydrolyzing) [Dictyoglomus thermophilum
           H-6-12]
          Length = 507

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   + RV++A+SGGVDS+ +A LL+R     +G      +   A           +
Sbjct: 203 EIRKQIGENRVLLAVSGGVDSTTLAVLLQRA----VG------DKLTAIFVDHGLLRMGE 252

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             +   V   + V+  V D EERF      V+ P              +  +  V     
Sbjct: 253 KEEVTEVLKRLGVNLVVVDAEERFLEKLKGVVDP--EEKRK-------IIGHEFV--EVF 301

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++ G    LA G      +             +           +    ++   +L
Sbjct: 302 KEEAKKRGPFKFLAQGTLYPDVIESAASHTGMAAKIKTHHN-------VGGLPEELGFEL 354

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             P   + K+ VR +A  +GL 
Sbjct: 355 IEPFRYLFKDEVRRIAEILGLP 376


>gi|161831532|ref|YP_001597186.1| GMP synthase [Coxiella burnetii RSA 331]
 gi|226738432|sp|A9N8L6|GUAA_COXBR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|161763399|gb|ABX79041.1| GMP synthase [Coxiella burnetii RSA 331]
          Length = 524

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +     +V+V +SGGVDS+V A L+ +     IG      +               +
Sbjct: 220 DIQEKVGKEQVIVGLSGGVDSAVTATLVHKA----IG------DQLVCVLVDTGLLRLNE 269

Query: 73  VYDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYA---AGETPLPCVDCNRTVKFSD 128
           V +   V    +       D ++RF  A+            AGE                
Sbjct: 270 VDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQF-----------IRV 318

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                ++L    L  G      +        +  + +           +          L
Sbjct: 319 FEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKVHIIKTHHN-------VGGLPLNMELKL 371

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+GL 
Sbjct: 372 IEPLRELFKDEVRKLGLELGLP 393


>gi|53804566|ref|YP_113570.1| argininosuccinate synthase [Methylococcus capsulatus str. Bath]
 gi|68566238|sp|Q609X7|ASSY_METCA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|53758327|gb|AAU92618.1| argininosuccinate synthase [Methylococcus capsulatus str. Bath]
          Length = 408

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V +A SGG+D+SV+   L+   G +V+  T                  G++V  AR  
Sbjct: 7   KKVALAYSGGLDTSVILKWLQETYGCEVVTFT-------------ADLGQGEEVEPARAK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
              + V   Y+ D  E F    + P           Y  G +    +   R      L+ 
Sbjct: 54  AQAMGVKEIYIDDLREEFSRDFVFPMFRANAIYEGEYLLGTSIARPLIAKR------LIE 107

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 108 IANETGADAIAHG 120


>gi|313896319|ref|ZP_07829872.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975118|gb|EFR40580.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 519

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 35/214 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +    +    +L K     R + A+SGGVDSSV A LL +  G ++  V     +     
Sbjct: 204 MDSFVQKTIEELRKKIGGGRALCALSGGVDSSVAAVLLSKAIGKNLTCVF---VDHGLLR 260

Query: 62  KRKGSCCAGQDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
           K +G         +   V     T +V+    + +ERF   +                 +
Sbjct: 261 KNEGD--------EVEAVFGSAGTYDVNFIRINAQERFYEKLKGVTEPEQKRK------I 306

Query: 119 DCNRTVKFSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
                ++         ++GA D L  G        V + G  +  + +           +
Sbjct: 307 IGAEFIRV--FEEAAHEIGAVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------V 354

Query: 178 FATTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                     ++  PL  + K+ VR   RE+G+ 
Sbjct: 355 GGLPDHVDFKEIVEPLRLLFKDEVRAAGRELGIP 388


>gi|315231182|ref|YP_004071618.1| thiamine biosynthesis ThiI-like protein [Thermococcus barophilus
           MP]
 gi|315184210|gb|ADT84395.1| thiamine biosynthesis ThiI-like protein [Thermococcus barophilus
           MP]
          Length = 365

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 40/193 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V A L+ + G ++I V                        +AR+V
Sbjct: 165 QGKVVALLSGGIDSPVAAFLMMKRGAEIIAVHF------------------DQGKNARKV 206

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +         +    +    I     ++     P               L+        
Sbjct: 207 VEK------TVNILNDYSPRDIELIIENHFEVLKPYVVA-----------LNRLNMREWT 249

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG----DM 195
            +     +  R       K    +     L +  S  L     + +  +RFP+      M
Sbjct: 250 CVVCKIAMLRRAAEIAKEKGALGIVTGDSLGQVASQTLTNLYFETMS-VRFPIHRPLLGM 308

Query: 196 KKESVRDLAREMG 208
            KE +  +ARE+G
Sbjct: 309 DKEEIIRIAREIG 321


>gi|113954939|ref|YP_729285.1| GMP synthase [Synechococcus sp. CC9311]
 gi|123031950|sp|Q0IE37|GUAA_SYNS3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113882290|gb|ABI47248.1| GMP synthase, glutamine-hydrolyzing [Synechococcus sp. CC9311]
          Length = 528

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      + +D    
Sbjct: 224 QKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMEFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               N+     +  ERF              G T     +  R +            +R+
Sbjct: 276 -RKFNIHVEYINARERFIKK---------LDGIT---DPEEKRKIIGTEFIRVFEEESRR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D L  G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLVQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLRFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + R +GL 
Sbjct: 381 KLFKDEVRKVGRTLGLP 397


>gi|330721692|gb|EGG99696.1| GMP synthase [gamma proteobacterium IMCC2047]
          Length = 413

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V++ +SGGVDSSVVAALL R  G  +  V +     RK    +     G          
Sbjct: 117 HVLLGLSGGVDSSVVAALLHRAIGDQLTCVFVDNGLLRKNEGDQVMDMFG---------- 166

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----- 135
             + V     D EE F +            GE      +  R +  +  + V  +     
Sbjct: 167 KNMGVRVIRADAEELFLSR---------LKGEN---DPEKKRKIIGNTFIEVFDEESSKI 214

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +        +  + +           +    +     L  PL ++
Sbjct: 215 DNVKWLAQGTIYPDVIESAAAKTGKAHVIKSHHN-------VGGLPEDMKLGLVEPLREL 267

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 268 FKDEVRKIGLELGLP 282


>gi|218708651|ref|YP_002416272.1| GMP synthase [Vibrio splendidus LGP32]
 gi|254800125|sp|B7VJU8|GUAA_VIBSL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218321670|emb|CAV17624.1| GMP synthase [Vibrio splendidus LGP32]
          Length = 517

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L  R  G  +  V      L+L    +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEDRF--------LDALEGEAEPEAKRKIIGHVFVDIFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|163791142|ref|ZP_02185561.1| argininosuccinate synthase [Carnobacterium sp. AT7]
 gi|159873614|gb|EDP67699.1| argininosuccinate synthase [Carnobacterium sp. AT7]
          Length = 404

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV    L  +GY+VI   L                 G+++   +  
Sbjct: 3   KGKVVLAYSGGLDTSVSIKWLIDEGYEVIACCL-------------DVGEGKNLDFIKEK 49

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              I  S  Y  D +E F N   +    ++   E   P +   +R +    L+ V  +  
Sbjct: 50  AIQIGASASYTIDAKEEFANEFALIALQAHTYYEGKYPLISALSRPLIAKKLVEVAIKED 109

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 110 AVAVAHG 116


>gi|118594656|ref|ZP_01552003.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylophilales bacterium HTCC2181]
 gi|118440434|gb|EAV47061.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylophilales bacterium HTCC2181]
          Length = 521

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV AAL+ R  G  +  +      L+L  +    +           
Sbjct: 223 DDEVILGLSGGVDSSVAAALIHRAIGAQLTCIFVDHGMLRLNEAEIVMETFK-------- 274

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                    + V     D  ++F + ++            G   +               
Sbjct: 275 -------KNLGVKVIHVDATDKFMSDLVGISDPEEKRKIIGRDFVEV-----------FQ 316

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +      LA G      +       ++    +           +    +     L 
Sbjct: 317 EHAEKFHQVKWLAQGTIYPDVIESAGGKTKKAHNIKSHHN-------VGGLPETLNLQLL 369

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR+L   +GL 
Sbjct: 370 EPLRELFKDEVRELGVALGLP 390


>gi|86145604|ref|ZP_01063934.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio sp. MED222]
 gi|85836575|gb|EAQ54701.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio sp. MED222]
          Length = 517

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L  R  G  +  V      L+L    +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEDRF--------LDALEGEAEPEAKRKIIGHVFVDIFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|281419704|ref|ZP_06250703.1| GMP synthase [Prevotella copri DSM 18205]
 gi|281406233|gb|EFB36913.1| GMP synthase [Prevotella copri DSM 18205]
          Length = 536

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 41/205 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 ELKEQLGDDKVILGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNE----FRD 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL- 130
            + D +  C  + ++    D  E+F             AG T     +  R +   D + 
Sbjct: 259 VMEDYK--C--LGLNVIGVDASEKFFAD---------LAGVT---DPEKKRKIIGRDFVE 302

Query: 131 ----SVTRQLGADVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                  +Q GA  LA G     R+   +  GK  +               +    ++  
Sbjct: 303 VFNAEAKKQTGAKWLAQGTIYPDRIESLNITGKVIKSHHN-----------VGGLPKEMN 351

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL  + K+ VR + R MG+ 
Sbjct: 352 LQLCEPLKWLFKDEVRRVGRSMGMP 376


>gi|118475361|ref|YP_892864.1| thiamine biosynthesis protein:ExsB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414587|gb|ABK83007.1| thiamine biosynthesis protein:ExsB [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 329

 Score = 57.5 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + +   SGG+DS +   L+   G +V  + + +          G            R 
Sbjct: 2   NKKCLALFSGGLDSMLAIKLISSQGIEVHALNIDI----------GFGGNPDKAELMSRR 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                 +  V +   ++   V+  F   +  G+   PC+DC+  + F   +S+    GA 
Sbjct: 52  AKMAGATFEVINARSKYLQEVL--FNPKFGYGKQFNPCIDCHGFM-FRTAISMLEDYGAS 108

Query: 140 VLATGHYIRSRLYVGDD 156
            + +G  +  R     +
Sbjct: 109 FVISGEVVGQRPMSQRN 125


>gi|260584346|ref|ZP_05852093.1| GMP synthase [Granulicatella elegans ATCC 700633]
 gi|260157864|gb|EEW92933.1| GMP synthase [Granulicatella elegans ATCC 700633]
          Length = 517

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 30/211 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRK 59
            ++    +    + +   + +V++ +SGGVDSSVV  LL++     IG  +T    +   
Sbjct: 204 TMANFIEMEIEKIREKVGNKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGL 259

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
             K +G             +     ++    + +ERF + +                 V 
Sbjct: 260 LRKDEGDQVMES-------LSGKFGLNIIRVNAQERFLSKLKGVSDPEQKRKIIGNEFVY 312

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
                 F D     +    D LA G        + + G +     +           +  
Sbjct: 313 V-----FDD--EAAKLTDVDFLAQG---TLYTDIIESGTKTAQTIKSHHN-------VGG 355

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 LPEDMQFELIEPLNTLFKDEVRALGTALGMP 386


>gi|315231685|ref|YP_004072121.1| n-type ATP pyrophosphatase [Thermococcus barophilus MP]
 gi|315184713|gb|ADT84898.1| n-type ATP pyrophosphatase [Thermococcus barophilus MP]
          Length = 321

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 45/250 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  R+ V +SGG DS V+  LL    K+  ++++ +T+                    V
Sbjct: 45  KRGERIAVGVSGGKDSVVLLHLLAKLRKKFPFEIVAITI---------DEGIEGYRPPSV 95

Query: 74  YDARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             A++  + + + H+V+ ++E   F     V    S+  GE    C  C    ++  LL+
Sbjct: 96  EIAKKNAELLGIEHHVYSFKEYIGFTLDETVQIMGSFEKGERVGACSYCGVWRRW--LLN 153

Query: 132 V-TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDL 188
              + + AD LA G          DD  +  +M   R       ++   +    + L   
Sbjct: 154 YAAQDVQADKLAIG-------LNLDDEAQVFLMNIMRGDIARLGRTGPYYEVIHEDLVPR 206

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
             PL ++ ++ +   A    +++                  D  +   A  A   +I   
Sbjct: 207 IKPLREVPEKEIVLYAVLNNIEV------------------DFSECPYAVEAFRAEIRDW 248

Query: 249 NGQILGRHNG 258
             ++  +H G
Sbjct: 249 LNEMEEKHPG 258


>gi|71275648|ref|ZP_00651933.1| Argininosuccinate synthase [Xylella fastidiosa Dixon]
 gi|71897808|ref|ZP_00680034.1| Argininosuccinate synthase [Xylella fastidiosa Ann-1]
 gi|170729533|ref|YP_001774966.1| argininosuccinate synthase [Xylella fastidiosa M12]
 gi|71163539|gb|EAO13256.1| Argininosuccinate synthase [Xylella fastidiosa Dixon]
 gi|71732363|gb|EAO34417.1| Argininosuccinate synthase [Xylella fastidiosa Ann-1]
 gi|167964326|gb|ACA11336.1| Argininosuccinate synthase [Xylella fastidiosa M12]
          Length = 401

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               +V+A SGG+D+S     LK  GY V  V          +   G     +D  + R 
Sbjct: 2   SKKNIVLAFSGGLDTSFCIPYLKEQGYAVHTVF---------ADTGGVDEDERDFIEKR- 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V SH   D      +  +     +  A +   P +  +R +    +L     LG
Sbjct: 52  -AAELGVASHLTVDGGPAIWDGFVKQLVWAGEAYQGQYPLLVSDRYLIVDAVLQRADALG 110

Query: 138 ADVLATG 144
              +A G
Sbjct: 111 TCAVAHG 117


>gi|319407593|emb|CBI81243.1| GMP synthase [Bartonella sp. 1-1C]
          Length = 518

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 67/205 (32%), Gaps = 56/205 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----L-QLYNSRKASKRKGSCCAGQDVY 74
            V+  +SGGVDSSV A LL    G  +  V      + +       +  +G         
Sbjct: 223 HVICGLSGGVDSSVAAILLHEAVGDQLTCVFVDHGLMRKNEAEEVLTLFRG--------- 273

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                    N+     +  + F NA           GET     +  R +     + V  
Sbjct: 274 -------HYNIKLIHVNAADMFINA---------LEGET---DPEKKRKIIGRLFIEVFE 314

Query: 135 QL-----GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +      GA+ LA        I S   +G+    +                +    +Q  
Sbjct: 315 EETKKIGGAEFLAQGTLYPDVIESVSAIGEAVTIKSHHN------------VGGLPEQMK 362

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR L RE+GL 
Sbjct: 363 MQLVEPLRELFKDDVRSLGRELGLP 387


>gi|57866227|ref|YP_187851.1| hypothetical protein SERP0255 [Staphylococcus epidermidis RP62A]
 gi|57636885|gb|AAW53673.1| conserved hypothetical protein TIGR00268 [Staphylococcus
           epidermidis RP62A]
 gi|329737822|gb|EGG74057.1| TIGR00268 family protein [Staphylococcus epidermidis VCU045]
          Length = 275

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 43/212 (20%)

Query: 7   TRLNSLDL--DKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           T LN+ ++  D   KDM+ VV+A SGGVDSS    LLK+   DV+GV     N  K    
Sbjct: 2   TELNTKEMKLDALLKDMQSVVIAFSGGVDSS---LLLKKA-IDVLGV-----NYVKPVVV 52

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           K      ++   A ++  ++ V     +  E     ++     S+            ++ 
Sbjct: 53  KSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTPESW----------YYSKR 102

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           + +S L ++  +LG + +  G        + DD    R   +  D            +  
Sbjct: 103 LMYSQLENIKNKLGFNYVLDG-------MIMDDLDDFRPGLKARDD-------FGVRSVL 148

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           Q   L        K  VR+L+ +  L + +K 
Sbjct: 149 QEAKLY-------KSEVRELSHQHDLPVWNKP 173


>gi|150015449|ref|YP_001307703.1| ExsB family protein [Clostridium beijerinckii NCIMB 8052]
 gi|149901914|gb|ABR32747.1| ExsB family protein [Clostridium beijerinckii NCIMB 8052]
          Length = 274

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 82/218 (37%), Gaps = 57/218 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGGVDS+ +  + K   G +V  VT+                   ++ +AR + 
Sbjct: 19  KVVLAFSGGVDSTFLLRVAKEALGDNVKAVTI-----------LSPYIPKWEIAEARELV 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLG 137
             + V H + +           P   S        P   C  C   V F+ +L+V ++ G
Sbjct: 68  RELGVQHEIIE----------APIIDSIK----FNPEDRCYLCKTAV-FTMILNVAKEQG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
            + +  G          DD    R   + +               ++L  +R PL    +
Sbjct: 113 YNCVIDG-------TNFDDISDYRPGLKAL---------------KELE-VRSPLLECKL 149

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
            K  +R  ++E+GL+  DK      C + +  Y + +K
Sbjct: 150 TKAEIRAFSKELGLNTWDKPPY--ACLLTRIPYGNELK 185


>gi|329962136|ref|ZP_08300147.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
 gi|328530784|gb|EGF57642.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
          Length = 517

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL R  G ++  +                     
Sbjct: 206 ELKEQLGNDRVILGLSGGVDSSVAAVLLHRAIGKNLTCIF-----------VDHGLLRKD 254

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +  +     + + ++    D  E+F              G T  P  +  R +   D + 
Sbjct: 255 EFRNVMNDYECLGLNVIGVDASEKFFKD---------LEGVT-EP--EQKRKIIGRDFIE 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V     A  +    ++       D  +   I  + +    +    +    ++    L  P
Sbjct: 303 VFDA-EAHKITDARWLAQGTIYPDRIESLNITGKTIKSHHN----VGGLPEEMNLRLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LQWLFKDEVRRVGRELGMP 376


>gi|315640422|ref|ZP_07895532.1| argininosuccinate synthase [Enterococcus italicus DSM 15952]
 gi|315483782|gb|EFU74268.1| argininosuccinate synthase [Enterococcus italicus DSM 15952]
          Length = 405

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV    L  +GYDV+   L +   R  +  K           A  V  
Sbjct: 4   KVILAYSGGLDTSVSIKWLVDEGYDVVACCLDIGEGRDTAAIK---------EKALLVGA 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
           +     Y  D  E F +   +         E   P V   +R +    L+ +     A  
Sbjct: 55  S---ESYAIDAREEFADDFALIALQGNTFYENSYPLVSALSRPLISKKLVELAHDTQATT 111

Query: 141 LATG 144
           +A G
Sbjct: 112 IAHG 115


>gi|330719943|gb|EGG98405.1| Argininosuccinate synthase [gamma proteobacterium IMCC2047]
          Length = 405

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   ++   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVICKWIQET-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + +   Y+ D  E F    + P           Y  G +        R +    L+ +
Sbjct: 53  EALGIKEIYIDDLREEFVRDFVFPMFRANAIYEGEYLLGTSIA------RPLITKRLIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 107 ANETGADAIAHG 118


>gi|297538326|ref|YP_003674095.1| GMP synthase large subunit [Methylotenera sp. 301]
 gi|297257673|gb|ADI29518.1| GMP synthase, large subunit [Methylotenera sp. 301]
          Length = 534

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 26/193 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGNQLTCVF---VDHGLLRLNEGDLVMEMF-------AG 274

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++V+    D  ++F      V  P A     G   +  V  N   K           GA
Sbjct: 275 RLHVNVIRVDATDQFMGHLAGVSDPEAKRKIIGREFVE-VFKNEAAKLKA--GTGGHKGA 331

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
             LA G      +  G    ++ +  +           +     +QL   L  PL D+ K
Sbjct: 332 TFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPLRDLFK 383

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 384 DEVRELGVALGLP 396


>gi|170591100|ref|XP_001900309.1| GMP synthase [Brugia malayi]
 gi|158592459|gb|EDP31059.1| GMP synthase, putative [Brugia malayi]
          Length = 786

 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 43/209 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+V +SGGVDS+V AALL +  G D VI + +     R     +             
Sbjct: 327 DKKVLVMVSGGVDSTVCAALLHKALGSDRVIAIHIDNGFMRSNESDQ------------- 373

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE---TPLP---------CVDCNRTVK 125
            V D +N      + + R  +A           G    TPL           +  +  ++
Sbjct: 374 -VVDLLN----ELNLKVRKYSAFYAFMNGRIQIGNELSTPLMGTIQPELKRKIIGDTFMR 428

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATT 181
             D   +  +L  D      ++       D  +    +     D+ +   + S  +    
Sbjct: 429 VKD--KIMDELKLDK---DIFLAQGTLRPDLIESASHLASSHADVIKTHHNDSALVRELR 483

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              L  +  PL D  K+ VR+L   +GL 
Sbjct: 484 D--LGKVLEPLKDFHKDEVRELGISLGLP 510


>gi|332184397|gb|AEE26651.1| NAD synthetase / Glutamine amidotransferase chain of NAD synthetase
           [Francisella cf. novicida 3523]
          Length = 249

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 47/193 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 33  VIGISGGIDSAVAASLAVKTGLPTTALIL-----------PSKNNQHQDIQDALELVEKL 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLP---CVDCN--RTVKFSDLLSVTRQLG 137
           N+ H++   +  +       F +S      T       +  N    ++   L +  +Q  
Sbjct: 82  NIEHHIVTIQPAY-----ENFLASTQEFINTDNNRQLVIKGNAQARLRMMYLYAYAQQY- 135

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                      +R+ +G D                  Y  + T         FPL ++KK
Sbjct: 136 -----------NRIVIGTDNACEW-------------YMGYFTKFGDGAADIFPLINLKK 171

Query: 198 ESVRDLAREMGLD 210
             V +L + + + 
Sbjct: 172 SQVFELGKYLDVP 184


>gi|254416610|ref|ZP_05030361.1| GMP synthase, C-terminal domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196176576|gb|EDX71589.1| GMP synthase, C-terminal domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 542

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 25/195 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RK        ++     
Sbjct: 238 DKRVLLALSGGVDSSTLAFLLHKA----IGDQLTCMFIDQGFMRKLEPERLVKLFQ---- 289

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            D  ++     +  +RF      V  P       G                     ++ L
Sbjct: 290 -DEFHIPVEYVNARDRFLARLEGVTDPEEKRRRIGHEF-----------IRVFEEQSKIL 337

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D LA G      +   D     +   R     +   + +    +     L  PL  +
Sbjct: 338 GPFDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKL 396

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + R +GL 
Sbjct: 397 FKDEVRKVGRSIGLP 411


>gi|187777058|ref|ZP_02993531.1| hypothetical protein CLOSPO_00603 [Clostridium sporogenes ATCC
           15579]
 gi|187773986|gb|EDU37788.1| hypothetical protein CLOSPO_00603 [Clostridium sporogenes ATCC
           15579]
          Length = 288

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------NPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    C+ +N+   +FD  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCNYLNIPINLFD-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|154685131|ref|YP_001420292.1| GMP synthase [Bacillus amyloliquefaciens FZB42]
 gi|226738381|sp|A7Z235|GUAA_BACA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|154350982|gb|ABS73061.1| GuaA [Bacillus amyloliquefaciens FZB42]
          Length = 513

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVAAL+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAALIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+GL 
Sbjct: 363 PLNTLFKDEVRALGTELGLP 382


>gi|259502394|ref|ZP_05745296.1| GMP synthase [Lactobacillus antri DSM 16041]
 gi|259169656|gb|EEW54151.1| GMP synthase [Lactobacillus antri DSM 16041]
          Length = 517

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRK 59
            + +   L    + K   D +V++ +SGGVDSSV A L+ +     IG  +T    +   
Sbjct: 204 TMDDFIDLQVDQIRKEVGDKKVILGLSGGVDSSVTAVLIHKA----IGDQLTCIFVDHGL 259

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
             K +          D       + V+    D  +RF             AG T     +
Sbjct: 260 LRKNEADQVMKALNKD-------LGVNIVKVDAADRFLGK---------LAGVT---DPE 300

Query: 120 CNRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R +   + + V     +++  AD LA G      +  G D  +     +         
Sbjct: 301 QKRKIIGKEFIEVFNEEAKKIPDADFLAQGTLYTDVIESGTDTAQT---IKSHHN----- 352

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 353 --VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 386


>gi|62484872|emb|CAI78889.1| gmp synthase [uncultured bacterium]
          Length = 517

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDSSVVAALL R  G  ++ +     ++    +R+              
Sbjct: 217 DERVICGLSGGVDSSVVAALLHRAIGDRLVCIF---VDNGLLRRREAELVEATFHG---- 269

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 +     D  +RF      V+ P       G   +          F D    TR 
Sbjct: 270 ---HFGMQLRAVDARQRFLTRLAGVVDPQEKRRIIGHEFIEV--------FKD--EATRI 316

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  LA G      +  G        + +           + A  ++   +L  PL  +
Sbjct: 317 EGARFLAQGTIYPDVIESGHGPTGHAAVIKSHHN-------VGALPKELGFELIEPLRLL 369

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +   +GL 
Sbjct: 370 FKDEVRQVGLALGLP 384


>gi|317011239|gb|ADU84986.1| GMP synthase [Helicobacter pylori SouthAfrica7]
          Length = 508

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 40/204 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKISNAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET                 
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETF-----------IEAFE 301

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF------LFATTQQQ 184
              ++         H+++ ++     G     +   +   +  S        +    +  
Sbjct: 302 KEAKK---------HHLKGKIEFLAQGTLYPDVIESV-SVKGPSKVIKTHHNVGGLPEWM 351

Query: 185 LCDLRFPLGDMKKESVRDLAREMG 208
              L  PL ++ K+ VR L +E+G
Sbjct: 352 DFKLIEPLRELFKDEVRSLGKELG 375


>gi|195443094|ref|XP_002069274.1| GK21111 [Drosophila willistoni]
 gi|194165359|gb|EDW80260.1| GK21111 [Drosophila willistoni]
          Length = 684

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 78/211 (36%), Gaps = 29/211 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDSSV AALL+R  +   +I V +     R+    K      + + D    
Sbjct: 230 KVLLLVSGGVDSSVCAALLRRALHPGQIIAVHVDNGFMRQNESEK----VERSLRD---- 281

Query: 80  CDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              I +   V      F      V  P    Y+  ETP+     N   K   +  +  ++
Sbjct: 282 ---IGIDLIVRKEGYTFLKGTTQVKRP--GQYSVVETPMLWQTYNPEEKRKIIGDIFVKV 336

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC------D 187
             DV+A    ++    +   G  R  +            ++          +        
Sbjct: 337 TNDVVAE-LKLKPEEVLLAQGTLRPDLIESASNLVSTNAETIKTHHNDTDLIRELRSAGR 395

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
           +  PL D  K+ VRDL  ++GL   +  + Q
Sbjct: 396 VVEPLCDFHKDEVRDLGNDLGLP-PELVERQ 425


>gi|239825809|ref|YP_002948433.1| GMP synthase [Geobacillus sp. WCH70]
 gi|239806102|gb|ACS23167.1| GMP synthase, large subunit [Geobacillus sp. WCH70]
          Length = 512

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 64/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------AES 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E F   VI       F S       P     +  N  +  F D  
Sbjct: 263 VMKT---------FREGFHMNVIKVDAKERFLSKLKGVTDPEQKRKIIGNEFIYVFDD-- 311

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +     L  
Sbjct: 312 EAAKLEGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+GL 
Sbjct: 362 PLNTLFKDEVRALGTELGLP 381


>gi|77165573|ref|YP_344098.1| argininosuccinate synthase [Nitrosococcus oceani ATCC 19707]
 gi|254433702|ref|ZP_05047210.1| argininosuccinate synthase [Nitrosococcus oceani AFC27]
 gi|119361298|sp|Q3J9C8|ASSY_NITOC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|76883887|gb|ABA58568.1| argininosuccinate synthase [Nitrosococcus oceani ATCC 19707]
 gi|207090035|gb|EDZ67306.1| argininosuccinate synthase [Nitrosococcus oceani AFC27]
          Length = 405

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQET-YDCEVVTF-----------TADIGQGEEVAPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +T+ V   Y+ D  E F    + P           Y  G +    +   R      L  +
Sbjct: 53  ETLGVKEIYIEDLREEFCRDYVFPMFRANTLYEGEYLLGTSIARPLIAKR------LAEI 106

Query: 133 TRQLGADVLATG 144
               GAD +A G
Sbjct: 107 ASATGADAVAHG 118


>gi|269215719|ref|ZP_06159573.1| GMP synthase [Slackia exigua ATCC 700122]
 gi|269131206|gb|EEZ62281.1| GMP synthase [Slackia exigua ATCC 700122]
          Length = 530

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 66/202 (32%), Gaps = 36/202 (17%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K   D RV++A+SGGVDSSVV ALL R  G  +  V +                   +  
Sbjct: 216 KTVGDDRVILALSGGVDSSVVGALLSRAIGKQLTCVFI-----------NHGLLRKNEPE 264

Query: 75  DARRV-CDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +  RV  +  +V       EER+    + V+ P       G              + +  
Sbjct: 265 EVERVFTEQFDVDFVHVHAEERYAELLDGVVEPEQKRRIIGTQF-----------WKEFF 313

Query: 131 SVTRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +V ++  G   LA G  Y             +    +          F           L
Sbjct: 314 TVAQKTGGVKYLAQGTIYPDIIESGARKTGGKASTIKSHHNL---IPFPEGVHFD----L 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL    K+ +R L   +GL 
Sbjct: 367 IEPLDHFFKDEIRALGTALGLP 388


>gi|227530110|ref|ZP_03960159.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227349978|gb|EEJ40269.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 517

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRK 59
            + +   L    + +   D +V++ +SGGVDSSV A L+ +     IG  +T    +   
Sbjct: 204 TMDDFIDLQIDHIRQEVGDKKVILGLSGGVDSSVTAVLIHKA----IGDQLTCIFVDHGL 259

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
             K +          D       + V+    D  +RF              G T     +
Sbjct: 260 LRKNEADQVMKALNKD-------LGVNIIKVDAADRFLGK---------LKGVT---DPE 300

Query: 120 CNRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R +   + + V     +++  AD LA G      +  G D  +     +         
Sbjct: 301 TKRKIIGKEFIEVFNEEAKKIPDADFLAQGTLYTDVIESGTDTAQT---IKSHHN----- 352

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 353 --VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 386


>gi|149247160|ref|XP_001528005.1| argininosuccinate synthase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447959|gb|EDK42347.1| argininosuccinate synthase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 422

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+++ SGG+D+SV+AA L    Y+VI   L                  +D   A +    
Sbjct: 12  VLLSYSGGLDTSVIAAWLIEQDYEVIA-FLANI------------GQEEDFEKAEKKALA 58

Query: 83  INV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGADV 140
           I      + D  + F   V  P   + A  E          R V    L+ V  + G   
Sbjct: 59  IGCSKFILADVRKEFVEKVCYPAIQTNAIYENTYLLGTSLARPVIAQALMKVAEENGCFA 118

Query: 141 LATG 144
           ++ G
Sbjct: 119 VSHG 122


>gi|237755401|ref|ZP_04584028.1| GMP synthase [glutamine-hydrolyzing] [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692442|gb|EEP61423.1| GMP synthase [glutamine-hydrolyzing] [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 511

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 34/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   + + + A+SGGVDSSV A L+    ++ IG  L          RKG     + 
Sbjct: 207 EIRKMVGNKKAICALSGGVDSSVAAVLV----HNAIGDNLTCIFVDNGLLRKGEREQVEK 262

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +      D  ++S  V D ++RF  A+                 +  N  +        
Sbjct: 263 TFR-----DNFHISLIVVDAKDRFLKALKGITDPEQKRK------IIGNLFI--EVFEEE 309

Query: 133 TRQL-GADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            ++L   + L         I S    G     +                +    ++    
Sbjct: 310 AKKLKDVEYLVQGTLYPDVIESVSVKGPSAVIKTHHN------------VGGLPERMNLK 357

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR+L +E+GL 
Sbjct: 358 LIEPLRELFKDEVRELGKELGLP 380


>gi|197334330|ref|YP_002155395.1| gmp synthase (glutamine-hydrolyzing) [Vibrio fischeri MJ11]
 gi|226739763|sp|B5FAY1|GUAA_VIBFM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|197315820|gb|ACH65267.1| gmp synthase (glutamine-hydrolyzing) [Vibrio fischeri MJ11]
          Length = 517

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L  R  G  +  V      L+L  + +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDNGLLRLNEADQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +   ++    + E+RF          +      P         V        +
Sbjct: 271 -------NKFGLNIIHVNAEQRF--------LDALEGESDPEVKRKIIGHVFVDIFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|282849345|ref|ZP_06258730.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella parvula ATCC 17745]
 gi|282581049|gb|EFB86447.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella parvula ATCC 17745]
          Length = 511

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 72/212 (33%), Gaps = 32/212 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            ++   +    D+ K   D +V++A+SGGVDSSV AAL+ +  G  +  +     +    
Sbjct: 198 TMANYAKTAIEDIRKTVGDGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLM 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         +         +     D E+RF            A  E P      
Sbjct: 255 RKNEGD--------EVEAAFKDSGMHFIRVDAEKRF--------LDKLAGLEDPEAKRKA 298

Query: 121 NRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
                        R++G  D LA G        V + G     + +           +  
Sbjct: 299 IGEEFIRVFEDEGRKIGSVDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGG 348

Query: 180 TTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                    L  PL ++ K+ VR+L  E+GL 
Sbjct: 349 LPAVVDFKGLIEPLRNLFKDEVRELGSELGLA 380


>gi|188997529|ref|YP_001931780.1| GMP synthase, large subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932596|gb|ACD67226.1| GMP synthase, large subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 511

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 34/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D + + A+SGGVDSSV A L+    ++ IG  L          RKG     + 
Sbjct: 207 EIRKMVGDKKAICALSGGVDSSVAAVLV----HNAIGDNLTCIFVDNGLLRKGEREQVEK 262

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +      D  ++S  V D ++RF  A+                 +  N  +        
Sbjct: 263 TFR-----DNFHISLIVVDAKDRFLKALKGITDPEQKRK------IIGNLFI--EVFEEE 309

Query: 133 TRQL-GADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            ++L   + L         I S    G     +                +    ++    
Sbjct: 310 AKKLKDVEYLVQGTLYPDVIESVSVKGPSAVIKTHHN------------VGGLPERMNLK 357

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR+L +E+GL 
Sbjct: 358 LIEPLRELFKDEVRELGKELGLP 380


>gi|150398787|ref|YP_001322554.1| GMP synthase subunit B [Methanococcus vannielii SB]
 gi|166215315|sp|A6UN70|GUAAB_METVS RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|150011490|gb|ABR53942.1| GMP synthase, large subunit [Methanococcus vannielii SB]
          Length = 310

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 34/199 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K     + ++A+SGGVDSSV A L  K  G  ++ V            RK       
Sbjct: 14  DIKKQINGRKTIIALSGGVDSSVAAVLTGKAIGDQLLAVY-----VDTGLMRKNESNEIW 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +++      + + ++  + + ++ F         S  A  + P         +       
Sbjct: 69  NIFK-----EQMGLNLKIVEAKDLF--------LSELAGIDDPEQKRKIIGRIFIEVFEK 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V ++ G ++L  G      +      K    +                     + ++  P
Sbjct: 116 VAKEQGEEILVQGTIAPDWIESEGQIKTHHNIA---------------LPSGMVLEVVEP 160

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR LA E+GL 
Sbjct: 161 LRDLYKDEVRKLATELGLP 179


>gi|54023930|ref|YP_118172.1| argininosuccinate synthase [Nocardia farcinica IFM 10152]
 gi|68566237|sp|Q5YYD3|ASSY_NOCFA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|54015438|dbj|BAD56808.1| putative argininosuccinate synthase [Nocardia farcinica IFM 10152]
          Length = 400

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGAEVVAVAIDL------------GQGGEDMNVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L+   +  GA
Sbjct: 52  LDCGAVESIVIDARDEFAEQYCLPTIQANALYMGQYPLVSAISRPLIVKHLVEAAKFHGA 111

Query: 139 DVLATG 144
           D +A G
Sbjct: 112 DTVAHG 117


>gi|150388319|ref|YP_001318368.1| ExsB family protein [Alkaliphilus metalliredigens QYMF]
 gi|149948181|gb|ABR46709.1| ExsB family protein [Alkaliphilus metalliredigens QYMF]
          Length = 270

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 47/195 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            V+ SGGVDS+    LLK   YDV+G      ++  A     S    ++  +A+R    I
Sbjct: 21  AVSYSGGVDST---FLLKVA-YDVLG------DNVIAVTATSSTYPQREFEEAKRWIKDI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
              H + + EE      I  F       E P   C  C   + F+ +  V  +   + +A
Sbjct: 71  GAKHIIIESEELD----IDGF------SENPINRCYYCKSEL-FTKVREVAVENNIEYVA 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          D G  R  M    +L                  +  PL    M K+ +
Sbjct: 120 DG------SNQDDLGDFRPGMQAASEL-----------------KVVSPLREAKMTKDEI 156

Query: 201 RDLAREMGLDIADKS 215
           R +++++ L    K 
Sbjct: 157 RAISKQLDLPTWSKP 171


>gi|239932341|ref|ZP_04689294.1| argininosuccinate synthase [Streptomyces ghanaensis ATCC 14672]
          Length = 397

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R      L++   + GA
Sbjct: 52  LACGAVEAEVADARDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKHLVAAAHKHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM-- 195
             +A G                   C       DQ  F               P+ D   
Sbjct: 112 TTVAHG-------------------CTGK--GNDQVRFEAGIVALAPDLKCIAPVRDYAM 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++       E GL IA    S
Sbjct: 151 TRDKAIAFCEEKGLPIATTKKS 172


>gi|46199840|ref|YP_005507.1| NH(3)-dependent NAD(+) synthetase [Thermus thermophilus HB27]
 gi|55981869|ref|YP_145166.1| NH(3)-dependent NAD(+) synthetase [Thermus thermophilus HB8]
 gi|46197467|gb|AAS81880.1| NH(3)-dependent NAD(+) synthetase [Thermus thermophilus HB27]
 gi|55773282|dbj|BAD71723.1| NH(3)-dependent NAD(+) synthetase [Thermus thermophilus HB8]
          Length = 281

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VA+SGGVDS+   AL  R  G + V  + L          R+ S  + +    A  V
Sbjct: 39  KAIVAVSGGVDSATTLALAVRALGAERVHALFL--------PHRESSPTSREH---AYLV 87

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +T  V+    D         I P    YAA     P +  +R     ++++  R +   
Sbjct: 88  AETFGVALEEVD---------ITPMVEGYAALT---PDLTPHRK---GNVMARARMI--- 129

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +        R      G +   +           YF +            PLGD+ K  
Sbjct: 130 -VLFDKSEAYRALPLGTGNKTERLFG---------YFTWHGDDTPP---VNPLGDLYKTQ 176

Query: 200 VRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           V  LA  +G+   +  K  + D+   Q  +    ++ + A + LE
Sbjct: 177 VWRLAEHLGVPEEVVRKPPTADLIPGQTDEADLGLRYLRADVILE 221


>gi|210630569|ref|ZP_03296519.1| hypothetical protein COLSTE_00404 [Collinsella stercoris DSM 13279]
 gi|210160427|gb|EEA91398.1| hypothetical protein COLSTE_00404 [Collinsella stercoris DSM 13279]
          Length = 563

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSSVVAAL    G   +G  +          RK      ++V+     
Sbjct: 249 EDRVILALSGGVDSSVVAAL----GARAVGRQMTCVFINHGLLRKSEPEQVEEVF----- 299

Query: 80  CDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +V       EER+    + V  P       G              +++  +V + L
Sbjct: 300 TKQFDVDFVHVHAEERYAALLDGVTDPEEKRRIIGTQF-----------WNEFFAVAKDL 348

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS---YFLFATTQQQLCDLRFPLG 193
             D     +  +  +Y        R         +       F           L  PL 
Sbjct: 349 ETDGRPVKYLAQGTIYPDIIESGARKTGGKTATIKSHHNLIPFPEGVHFD----LIEPLD 404

Query: 194 DMKKESVRDLAREMGLD 210
              K+ VR+L   +GL 
Sbjct: 405 HFFKDEVRELGLALGLP 421


>gi|114766398|ref|ZP_01445367.1| GMP synthase [Pelagibaca bermudensis HTCC2601]
 gi|114541339|gb|EAU44387.1| GMP synthase [Roseovarius sp. HTCC2601]
          Length = 521

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 52/234 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV   LL    G  +  V                      + +A +
Sbjct: 223 DKQVICALSGGVDSSVTGILLHEAIGDQLTCVF--------------VDHGLLRLNEAEQ 268

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V     D  N++    D  E F  A         +  ET    +     +          
Sbjct: 269 VVSMFRDNYNLNLIHADESELFLGA-----LEGVSDPETKRKTIG---KLFIDVFQKYAD 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           Q+ GA+ LA G      +          +  +           +    ++    L  PL 
Sbjct: 321 QIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VGGLPEKMGLKLVEPLR 373

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           ++ K+ VR L  E+GL  +         F+ +  +         G+A+   G+I
Sbjct: 374 ELFKDEVRALGHELGLPAS---------FIGRHPF------PGPGLAIRCPGEI 412


>gi|109947068|ref|YP_664296.1| GMP synthase [Helicobacter acinonychis str. Sheeba]
 gi|123173520|sp|Q17YH9|GUAA_HELAH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|109714289|emb|CAJ99297.1| GMP synthase [Helicobacter acinonychis str. Sheeba]
          Length = 508

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   D RV+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKISDARVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K     
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK----- 305

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +   + LA G  +   +      K    + +           +    +     L  
Sbjct: 306 KHHLKGKIEFLAQG-TLYPDVIESVSVKGPSKVIKSHHN-------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|294506296|ref|YP_003570354.1| glutamine-dependent NAD(+) synthetase [Salinibacter ruber M8]
 gi|294342624|emb|CBH23402.1| glutamine-dependent NAD(+) synthetase [Salinibacter ruber M8]
          Length = 567

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V +SGG+DS+V  AL     G + V+GVT+                +   V D++ +
Sbjct: 294 KALVGLSGGIDSAVTCALAVEALGPERVVGVTM-----------PSEISSEGSVTDSQAL 342

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
            D + +       +            +   AG  P
Sbjct: 343 ADNLGIEFKEIPIKPA--VDAFDDMLADEFAGTEP 375


>gi|268679904|ref|YP_003304335.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617935|gb|ACZ12300.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 261

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 47/196 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R++VA SGGVDSS    LLK   YDV+G       +  A   +    A  ++ +ARR+ D
Sbjct: 17  RLIVAFSGGVDSS---FLLKTA-YDVLG------ENVLAISLQTPYIAESEIEEARRIAD 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I   H V           + P+            C  C   + FS L +  +Q    V+
Sbjct: 67  EIGARHLVL----------VKPWMEE-LRTNPKERCYLCKHAL-FSSLTTFAQQRDFRVI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
           A G    +     +    R  +                    +L  +  PL D  + K  
Sbjct: 115 AEG---SNVDDTMEKRPGRVALL-------------------ELS-ILTPLLDVGLSKAE 151

Query: 200 VRDLAREMGLDIADKS 215
           +R L++ +GL   +K 
Sbjct: 152 IRLLSKAVGLSTWNKP 167


>gi|222445379|ref|ZP_03607894.1| hypothetical protein METSMIALI_01007 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434944|gb|EEE42109.1| hypothetical protein METSMIALI_01007 [Methanobrevibacter smithii
           DSM 2375]
          Length = 391

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV   LL+   YDV  +T                   +++  A ++  
Sbjct: 3   KVVLAFSGGLDTSVCVKLLEEK-YDVEVIT----------ACVDVGQGDEEIAKAEKMAK 51

Query: 82  TI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            I    HY  D +E F N  I     + A  E   P      R +    ++ + ++ GA 
Sbjct: 52  EIGGYKHYTIDAKEEFANEYIARGIKANAEYE-GYPLSTALARPLIAQKIIDIAKKEGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 AIAHG 115


>gi|221133879|ref|ZP_03560184.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Glaciecola sp. HTCC2999]
          Length = 525

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGPKLTCVFVDNGLLRLNEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF  A+                 +  +  V        +
Sbjct: 279 -------DHFGLNIIKVDAEDRFLAALADESDPEAKRK------IIGHEFVNV--FDEES 323

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           R+L  A  LA G      +        +  + +           +    +     L  PL
Sbjct: 324 RKLENAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPEDMEMGLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 RELFKDEVRKIGLELGLP 394


>gi|59711245|ref|YP_204021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio fischeri ES114]
 gi|75354446|sp|Q5E763|GUAA_VIBF1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|59479346|gb|AAW85133.1| GMP synthetase (glutamine aminotransferase) [Vibrio fischeri ES114]
          Length = 517

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L  R  G  +  V      L+L  + +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDNGLLRLNEADQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +   ++    + E+RF +A         +  ET    +     V        +
Sbjct: 271 -------NKFGLNIVHVNAEQRFLDA-----LEGESDPETKRKIIG---HVFVDIFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|291529433|emb|CBK95019.1| NAD+ synthetase [Eubacterium rectale M104/1]
          Length = 249

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 48/250 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            DKN KD   V+ +SGG DS++ AAL  +  G D VIGV L                   
Sbjct: 21  FDKNGKDCNAVLGISGGKDSTIAAALCVKALGSDRVIGVML-----PDGE--------QS 67

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+ D+  VC  + + +Y  +       +             T       N   +      
Sbjct: 68  DINDSVEVCRLLGIRNYTINIRSALEASFKQ--LQDCGIEIT--EQCRQNIAPR-----E 118

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            T+ + A        + +     +D      +    D + D                  P
Sbjct: 119 RTKMIRAVCQCNNGRMINTCNYSEDYVGYFTI--GGDGDGD----------------VAP 160

Query: 192 LGDMKKESVRDLAREMGLDIA--DKSDSQDIC-FVQQGKYFDVVKRINAGIALE--GDIV 246
           LG + K  V  +   +GL     DK+ S  +C    +  +    ++++A I  E  GD  
Sbjct: 161 LGYLTKSEVCAIGHCLGLPSKYVDKTPSDGLCGKTDEDNFGFTYEQLDAFIRNETCGD-K 219

Query: 247 HLNGQILGRH 256
            ++  I  +H
Sbjct: 220 EIDEAIKQKH 229


>gi|197119783|ref|YP_002140210.1| NAD synthetase [Geobacter bemidjiensis Bem]
 gi|197089143|gb|ACH40414.1| NAD+ synthetase [Geobacter bemidjiensis Bem]
          Length = 273

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++VA +     G + V    +                  +    AR V +
Sbjct: 32  VLGLSGGIDSALVAYIAAEALGPENVYAYCM-----------PYRTSNPESEAHARLVAE 80

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ ++  V +         I     +Y       P     R         + R+     +
Sbjct: 81  SLGINFKVIE---------ITGMVDAYF---DLYPDASNMRRGN-----KMARERM--TI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              H       V     +  ++              + T    +     P+GD+ K  V 
Sbjct: 122 LYDHSAEVAGLVLGTSNKTELLL------------GYGTLHGDMASALNPIGDIYKSQVW 169

Query: 202 DLAREMGLD--IADKSDSQDI 220
           +L+  MG+   + +K  S D+
Sbjct: 170 ELSEAMGVPHEVIEKKPSADL 190


>gi|317132648|ref|YP_004091962.1| GMP synthase, large subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470627|gb|ADU27231.1| GMP synthase, large subunit [Ethanoligenens harbinense YUAN-3]
          Length = 510

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 40/205 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +     RV++A+SGGVDS+V AALL R  G  +  +     +     K +G      
Sbjct: 208 ELKEKIGHGRVLLALSGGVDSAVAAALLSRAVGRQLTCIF---VDHGLMRKNEGDEVDQA 264

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                       ++     D  ERF   +                 +     ++      
Sbjct: 265 F--------QGRDIQFVRVDAAERFLEKLQGVSDPERKRK------IIGEEFIRV--FED 308

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              ++GA D LA G        V + G       +           +          +RF
Sbjct: 309 EANKIGAVDFLAQG---TIYPDVIESGLGDAATIKSHHN-------VGGLP----EHVRF 354

Query: 191 -----PLGDMKKESVRDLAREMGLD 210
                PL  + K+ VR L  E+GL 
Sbjct: 355 KEIVEPLRLLFKDEVRALGLELGLP 379


>gi|303243807|ref|ZP_07330147.1| GMP synthase, large subunit [Methanothermococcus okinawensis IH1]
 gi|302485743|gb|EFL48667.1| GMP synthase, large subunit [Methanothermococcus okinawensis IH1]
          Length = 310

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   + + ++A+SGGVDSSV A L     Y  IG      +   A           +
Sbjct: 14  EIKEKIGNKKAIIALSGGVDSSVAAVLT----YRAIG------DRLLAVFVDTGLMRKNE 63

Query: 73  VYDARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSD 128
             +  ++  + + ++  + D ++ F   +             G   +             
Sbjct: 64  AEEIYKIFKENMGLNLKIIDAKDIFLKELKGVSDPEQKRKIIGRLFIEV----------- 112

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V ++ G +VL  G      +      K    +                     + ++
Sbjct: 113 FEEVAKENGEEVLVQGTIAPDWIESEGAIKTHHNIA---------------LPSGMVLEV 157

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR LA+E+GL 
Sbjct: 158 VEPLRELYKDEVRILAKELGLP 179


>gi|253572641|ref|ZP_04850042.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6]
 gi|251837773|gb|EES65863.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6]
          Length = 426

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++VA+SGG DS V     L   GY         +   + S R        D    R+
Sbjct: 19  DDKLLVALSGGADS-VALLRVLHTAGYQCEAAHCNFHLRGEESNR--------DEQFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  +  D+                 + E         R ++++    +  + GA
Sbjct: 70  LCQKYGIRLHTIDFNTT------QYATEKRISIE------MAARELRYNWFEKIKEECGA 117

Query: 139 DVLATGHY 146
            V+A  H+
Sbjct: 118 HVIAVAHH 125


>gi|330997932|ref|ZP_08321766.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569536|gb|EGG51306.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT
           11841]
          Length = 450

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 24/129 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++VA+SGG DS V   L L++ G+    V    +   + S R        D    R 
Sbjct: 24  DDKILVALSGGADS-VALLLVLQQAGFHCEAVHCNFHLRGEESDR--------DEKFVRD 74

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVTRQLG 137
           +C + ++  +  D+              + A        +    R +++     +     
Sbjct: 75  LCRSRSIRLHTKDF-------------DTAAYARQKGISIEMAARELRYGYFEELRADWR 121

Query: 138 ADVLATGHY 146
            D +A  H+
Sbjct: 122 FDKIAVAHH 130


>gi|312135395|ref|YP_004002733.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis
           OL]
 gi|311775446|gb|ADQ04933.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL]
          Length = 289

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 68/210 (32%), Gaps = 43/210 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LLK   +DV+G      +   A          ++  DA R+   
Sbjct: 45  VLVAFSGGVDST---FLLKVS-FDVLG------DKAIAVFSSSVLSPQREKEDAARLAKD 94

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I     V          V                    N   KF         +    + 
Sbjct: 95  IGAKLIVI------ERDVFS------------NEDFMKND--KFRCYYCKKDLIKRLKIL 134

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                 + +  G +          +D  +D      A  ++ +    F  G + KE +R 
Sbjct: 135 KEELNLNEIVEGSN----------IDDLQDFRPGRKALEEEGIKSPLFEAG-LTKEEIRY 183

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           L++E GL    K  S   C V +  Y D +
Sbjct: 184 LSKEFGLSTYQKHSS--ACLVTRIPYGDEI 211


>gi|302308231|ref|NP_985087.2| AER230Cp [Ashbya gossypii ATCC 10895]
 gi|299789355|gb|AAS52911.2| AER230Cp [Ashbya gossypii ATCC 10895]
          Length = 414

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 27/131 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +A SGG+D+SV+ A L   GY+V+   +                  +D   A     
Sbjct: 5   KVCLAYSGGLDTSVILAWLLEQGYEVVA-FMAN------------VGQEEDFQAAEEKAL 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            I        D  E+F   V+ P           Y  G +    V     +       + 
Sbjct: 52  KIGASKFVCVDCREQFVTDVLFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------DIA 105

Query: 134 RQLGADVLATG 144
            Q     +A G
Sbjct: 106 EQEHCFAVAHG 116


>gi|255322449|ref|ZP_05363594.1| GMP synthase [Campylobacter showae RM3277]
 gi|255300357|gb|EET79629.1| GMP synthase [Campylobacter showae RM3277]
          Length = 510

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AALL       I   L L        R G     +  +     
Sbjct: 214 NKKVLCAVSGGVDSSVTAALLAAA----IPQNLILVFVDNGLLRTGEREQVEVTFR---- 265

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              + V     D  + F      V  P       GET                    ++ 
Sbjct: 266 -TKLGVELVSIDASKTFLERLAGVTDPEKKRKIIGETF-----------IEIFEKEAKKH 313

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                LA G      +     G  + I  +           +         +L  PL ++
Sbjct: 314 DNVKFLAQGTLYTDIIESSVVGSSKTI--KSHHN-------VGGLPDWMSFELIEPLREI 364

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+GL 
Sbjct: 365 FKDEVRQLGLELGLS 379


>gi|148643144|ref|YP_001273657.1| argininosuccinate synthase [Methanobrevibacter smithii ATCC 35061]
 gi|261350059|ref|ZP_05975476.1| argininosuccinate synthase [Methanobrevibacter smithii DSM 2374]
 gi|148552161|gb|ABQ87289.1| argininosuccinate synthase, ArgG [Methanobrevibacter smithii ATCC
           35061]
 gi|288860845|gb|EFC93143.1| argininosuccinate synthase [Methanobrevibacter smithii DSM 2374]
          Length = 391

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV   LL+   YDV  +T                   +++  A ++  
Sbjct: 3   KVVLAFSGGLDTSVCVKLLEEK-YDVEVIT----------ACVDVGQGDEEIAKAEKMAK 51

Query: 82  TI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            I    HY  D +E F N  I     + A  E   P      R +    ++ + ++ GA 
Sbjct: 52  EIGGYKHYTIDAKEEFANEYIARGIKANAEYE-GYPLSTALARPLIAQKIIDIAKKEGAT 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 AIAHG 115


>gi|57641486|ref|YP_183964.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159810|dbj|BAD85740.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
           KOD1]
          Length = 276

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 22/128 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R +VA SGG DS V   L K   Y V           +A        A + + +ARR+ +
Sbjct: 54  RAIVAYSGGKDSVVALYLAKEV-YKV--------PELEAVMVDHGLMAEEAIENARRMAE 104

Query: 82  TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + V   +   DY + FR A++          +   PC  C+R      L     + G  
Sbjct: 105 ALGVLFKILRYDYSDIFREALL----------KAQSPCRACSRRT-MERLRKYALKNGYR 153

Query: 140 VLATGHYI 147
            + TGH +
Sbjct: 154 YIITGHEL 161


>gi|320528310|ref|ZP_08029472.1| thiamine biosynthesis/tRNA modification protein ThiI [Solobacterium
           moorei F0204]
 gi|320131224|gb|EFW23792.1| thiamine biosynthesis/tRNA modification protein ThiI [Solobacterium
           moorei F0204]
          Length = 394

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ +SGG+DS V A  L + G  V  V         +          + +  A +V
Sbjct: 175 NGKVLLMLSGGIDSPVAAYQLMKRGLHVEAVHF------ASPPYTSENAKNKVLELASQV 228

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            +    +  +V ++ +             Y     P       R + F     ++++ G 
Sbjct: 229 SEYQGHMKVHVVNFTQL--------QLEIYKHAGDPYAVTLM-RRMMFRLADMISKKYGC 279

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +        +                    +          +  PL    K 
Sbjct: 280 LAIGTGESVGQVASQTLESINCIN-------------TVTNMP------ILRPLVCYDKI 320

Query: 199 SVRDLAREMG 208
            + DLAR++G
Sbjct: 321 EIIDLARKIG 330


>gi|270012865|gb|EFA09313.1| hypothetical protein TcasGA2_TC030725 [Tribolium castaneum]
          Length = 687

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +      +I + +     RK    K             
Sbjct: 230 NNKVLLLVSGGVDSTVAAALLHKALRPDQIIAIHIDNGFMRKNESSKVYQSL-------- 281

Query: 78  RVCDTINVSHYVFDYEERFRN--AV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                I ++  V      F     V  +    ++     T + C  C+   K   +  V 
Sbjct: 282 ---QKIGMNLRVVKAASTFMEGTTVVPVDKHEATLRTTLTSMLCKTCDPEEKRKIIGDVF 338

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++ +D + +   ++    V   G  R  +      +   +  +        + +  LR 
Sbjct: 339 MRV-SDEIISDLNLKPEEVVLAQGTLRPDLIESASALVSSKADTIKTHHNDSELVRKLRS 397

Query: 191 ------PLGDMKKESVRDLAREMGLD 210
                 PL D  K+ VR L R++GL 
Sbjct: 398 EGRVVEPLKDFHKDEVRALGRDLGLT 423


>gi|219851846|ref|YP_002466278.1| PP-loop domain protein [Methanosphaerula palustris E1-9c]
 gi|219546105|gb|ACL16555.1| PP-loop domain protein [Methanosphaerula palustris E1-9c]
          Length = 304

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 20/151 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + R+ VA+SGG DS+V+  L+     KR    ++ +T                   + + 
Sbjct: 47  NERIAVALSGGKDSTVLLWLMNMLLGKRAADRLVAIT---------VDEGIRDYRDETLA 97

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            ARR+   + + H +  +++ F          S   G     C  C    +   L     
Sbjct: 98  AARRLTHRLGIRHIIVSFQDLFGAD-----LDSLLIGNRERACSVCGVYRR-QALQQTAV 151

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
           + GA VLATGH +            R  + R
Sbjct: 152 EAGAGVLATGHCLDDEAQSVLMNYLRGDLTR 182


>gi|189240082|ref|XP_001812886.1| PREDICTED: similar to gmp synthase [Tribolium castaneum]
          Length = 748

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +      +I + +     RK    K             
Sbjct: 291 NNKVLLLVSGGVDSTVAAALLHKALRPDQIIAIHIDNGFMRKNESSKVYQSL-------- 342

Query: 78  RVCDTINVSHYVFDYEERFRN--AV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                I ++  V      F     V  +    ++     T + C  C+   K   +  V 
Sbjct: 343 ---QKIGMNLRVVKAASTFMEGTTVVPVDKHEATLRTTLTSMLCKTCDPEEKRKIIGDVF 399

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++ +D + +   ++    V   G  R  +      +   +  +        + +  LR 
Sbjct: 400 MRV-SDEIISDLNLKPEEVVLAQGTLRPDLIESASALVSSKADTIKTHHNDSELVRKLRS 458

Query: 191 ------PLGDMKKESVRDLAREMGLD 210
                 PL D  K+ VR L R++GL 
Sbjct: 459 EGRVVEPLKDFHKDEVRALGRDLGLT 484


>gi|52424827|ref|YP_087964.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia succiniciproducens MBEL55E]
 gi|81387319|sp|Q65UI1|GUAA_MANSM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52306879|gb|AAU37379.1| GuaA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 523

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSV 132
                  D   ++    + E+RF +A+               P        K F D+   
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE--------PESKRKMIGKVFVDVFDE 319

Query: 133 T--RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +Q     LA G      +        +  + +           +          L  
Sbjct: 320 ESHKQTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVE 372

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +   +GL 
Sbjct: 373 PLRELFKDEVRKIGLALGLP 392


>gi|322514531|ref|ZP_08067565.1| GMP synthase [Actinobacillus ureae ATCC 25976]
 gi|322119544|gb|EFX91629.1| GMP synthase [Actinobacillus ureae ATCC 25976]
          Length = 566

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 268 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 319

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 320 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 364

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 365 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 417

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 418 RELFKDEVRKIGLALGLP 435


>gi|305663343|ref|YP_003859631.1| NH(3)-dependent NAD(+) synthetase [Ignisphaera aggregans DSM 17230]
 gi|304377912|gb|ADM27751.1| NH(3)-dependent NAD(+) synthetase [Ignisphaera aggregans DSM 17230]
          Length = 275

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 41/197 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V + L  +  G + V+GV +                  +D+ DA  + 
Sbjct: 38  VVIGVSGGLDSTVTSILAVKALGRENVLGVIM-----------PSRYTPREDIDDALYIV 86

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++ + +   D         I P   SY      LP  D +  +   +L+   R      
Sbjct: 87  NSLGIRYLYID---------IDPILDSYIKN---LPGFDHSNRLATGNLMPRIRM----A 130

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +   +       V   G +  I+       +   Y               P+GD+ K  V
Sbjct: 131 ILYYYANLYNYLVLGTGDKSEILL--GYFTK---YGDGGVD-------LLPIGDLYKVQV 178

Query: 201 RDLAREMGLDIADKSDS 217
           R LA  MG +   +  S
Sbjct: 179 RRLAEIMGFEKIARKPS 195


>gi|302541222|ref|ZP_07293564.1| argininosuccinate synthase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458840|gb|EFL21933.1| argininosuccinate synthase [Streptomyces himastatinicus ATCC 53653]
          Length = 405

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +D  + P   RVV+A SGG+D+SV    + +  G +VI V                   G
Sbjct: 1   MDRKEKPVTERVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGG 48

Query: 71  QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSD 128
           +D+   R+       V   V D ++ F +   +P   + A      P V   +R      
Sbjct: 49  EDLDVIRKRALACGAVEAEVADAKDEFADEYCLPAIKANALYMDRYPLVSALSRPTIVKH 108

Query: 129 LLSVTRQLGADVLATG 144
           L++  R+ GA  +A G
Sbjct: 109 LVAAARKHGATTVAHG 124


>gi|168182287|ref|ZP_02616951.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
 gi|237793422|ref|YP_002860974.1| hypothetical protein CLJ_B0142 [Clostridium botulinum Ba4 str. 657]
 gi|182674652|gb|EDT86613.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
 gi|229263939|gb|ACQ54972.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Ba4
           str. 657]
          Length = 268

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 64/232 (27%)

Query: 13  DLDKNPKDMR-VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSC 67
           +L K  KD++ V VA SGGVDS+    LLK      G +VI +T                
Sbjct: 9   NLIKYLKDLKSVAVAFSGGVDST---LLLKAAKEALGDNVISIT-----------VVSPY 54

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTV 124
               ++ +AR + D I +  Y  +           P      +     P   C  C ++V
Sbjct: 55  IPKWEIKEARELVDKIGIKSYFIEV----------PMLEEIRS----NPEDRCYICKKSV 100

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            F+ +  + R+ G   +  G                       D  +D  Y       ++
Sbjct: 101 -FNKIKDLAREKGIKYIVDGTNA--------------------DDTKD--YRPGMIALKE 137

Query: 185 LCDLRFPL--GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           L  ++ PL    + K+ +R L++E+ LD  DK      C + +  Y   +K 
Sbjct: 138 LD-VKSPLLENSINKKEIRVLSKELQLDTWDKP--AYACLLSRIPYNQEIKE 186


>gi|121997522|ref|YP_001002309.1| argininosuccinate synthase [Halorhodospira halophila SL1]
 gi|166219970|sp|A1WUZ5|ASSY_HALHL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|121588927|gb|ABM61507.1| argininosuccinate synthase [Halorhodospira halophila SL1]
          Length = 403

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  ARR 
Sbjct: 5   KKVVLAYSGGLDTSVILKWLEETYGCEVVTFT-------------ADLGQGEELEPARRK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   +   YV D  E F    + P           Y  G +    +   R V       
Sbjct: 52  AEAFGIREIYVDDLREEFARDFVFPMFRANAVYEGEYLLGTSIARPLIAKRQV------E 105

Query: 132 VTRQLGADVLATG 144
           + R+ GAD +A G
Sbjct: 106 IARETGADAVAHG 118


>gi|326391356|ref|ZP_08212895.1| Queuosine synthesis-like protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992619|gb|EGD51072.1| Queuosine synthesis-like protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 266

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 46/192 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS+     L +  YDV+G      N   A           ++ +A  +   I
Sbjct: 12  LIAFSGGVDST----FLAKVSYDVLG------NRVLAVTATSPMHPKSELKEAVELAKKI 61

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            + H V ++ +             +     P   C  C   + FS   ++  + G   + 
Sbjct: 62  GLPHLVVEFNDILE-------IEEFKK--NPLNRCYICKSNL-FSRFKAIAEEKGFKYIL 111

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G    +   V D    RR +                    +L  +  PL    +KKE +
Sbjct: 112 EG---TNADDVSDFRPGRRALK-------------------ELG-ILSPLLECGIKKEEI 148

Query: 201 RDLAREMGLDIA 212
           R L++EMGL   
Sbjct: 149 RILSKEMGLPTW 160


>gi|260776623|ref|ZP_05885518.1| GMP synthase [glutamine-hydrolyzing] [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607846|gb|EEX34111.1| GMP synthase [glutamine-hydrolyzing] [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 517

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGNKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF         ++      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEERF--------LAALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|297582999|ref|YP_003698779.1| GMP synthase large subunit [Bacillus selenitireducens MLS10]
 gi|297141456|gb|ADH98213.1| GMP synthase, large subunit [Bacillus selenitireducens MLS10]
          Length = 512

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 38/203 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +N  D +V+ A+SGGVDSSVVAAL+ +  G  +I + +   +     K +        
Sbjct: 211 IRENVGDRKVLCALSGGVDSSVVAALVHKAIGDQLICMFI---DHGLLRKNE-------- 259

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFS 127
              A+ V     +  +++    D +ERF   +                 +  N  +  F 
Sbjct: 260 ---AKSVMETFAEGFDMNVIKIDAQERFLGKLAGVSDPEQKRK------IIGNEFIYIFE 310

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +     +    D LA G      +  G D  +     +           +    +    D
Sbjct: 311 E--EAAKLEDVDFLAQGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMKFD 358

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  E+GL 
Sbjct: 359 LIEPLNTLFKDEVRAVGSELGLS 381


>gi|310659784|ref|YP_003937505.1| nh3-dependent nad+ synthetase [Clostridium sticklandii DSM 519]
 gi|308826562|emb|CBH22600.1| putative NH3-dependent NAD+ synthetase [Clostridium sticklandii]
          Length = 247

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 17/79 (21%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +VV+ +SGG DSSVVAAL  R  Y   +V G+ +   +               D+ D+ 
Sbjct: 28 TKVVLGISGGKDSSVVAALCARA-YGKENVYGILMPNGD-------------QIDIADSH 73

Query: 78 RVCDTINVSHYVFDYEERF 96
          +VC+ + ++  V + +  +
Sbjct: 74 KVCEALGINSRVINIKPVY 92


>gi|15605784|ref|NP_213161.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Aquifex aeolicus VF5]
 gi|6225492|sp|O66601|GUAA_AQUAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|2982942|gb|AAC06558.1| GMP synthase [Aquifex aeolicus VF5]
          Length = 510

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   D +V+ A+SGGVDS+V A L  R     IG  L  +       R       ++
Sbjct: 208 EIRKTVGDAKVIAALSGGVDSTVAAVLTHRA----IGDKLHCFFIDHGLLRY------KE 257

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             +  +   ++ +   V D  E F      V  P       G T +              
Sbjct: 258 REEVEKNLRSLGLPLTVVDASEEFLEKLKGVEDPEEKRKIIGRTFIEV-----------F 306

Query: 130 LSVTRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               +++ GA+ L  G  Y       G  G  +                +    ++    
Sbjct: 307 EREAKKIEGAEFLLQGTLYPDVVESAGIKGSAKIKTHHN----------VGGLPERMNLK 356

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  P  ++ K+ VR + + +G+ 
Sbjct: 357 LLEPFRELFKDEVRKIGKLLGVP 379


>gi|257438245|ref|ZP_05614000.1| GMP synthase [Faecalibacterium prausnitzii A2-165]
 gi|257199322|gb|EEU97606.1| GMP synthase [Faecalibacterium prausnitzii A2-165]
          Length = 516

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 36/209 (17%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSR--KASKRKGS 66
           N   L +   D +V+ A+SGGVDSSV+AA+L +  G  +  V     +    + ++++  
Sbjct: 205 NVKALRERIGDGKVLCALSGGVDSSVLAAMLAKAIGKQLTCVF---VDHGLLRKNEKEEV 261

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C             +  +++    D  +R+ + +                 +     ++ 
Sbjct: 262 CSVFGPGN-----ANGFDINFICVDARDRYFSKLAGVTEPERKRK------IIGEEFIRV 310

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATT 181
                  + +G  D LA G      +  G  G+    +       +    D         
Sbjct: 311 --FEEQAKLIGKVDFLAQGTIYPDVVESGLGGESTVIKSHHNVGGLPDTVD--------- 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +L  PL ++ K+ VR + RE+GL 
Sbjct: 360 ---FKELVEPLRNLFKDEVRQVGRELGLP 385


>gi|146304252|ref|YP_001191568.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702502|gb|ABP95644.1| PP-loop domain protein [Metallosphaera sedula DSM 5348]
          Length = 318

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV VA+SGG DS+ +  +L     + G++V+G+ + L         +G+  +      A 
Sbjct: 49  RVAVAVSGGKDSTTLLHVLAKLSGKMGFEVVGINIDL------GIDRGTKYSSLSTEFAV 102

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  + + V + V   +E+        F    A  +   P       VK   L    ++LG
Sbjct: 103 KNFEKLGVEYKVVSLKEKHG------FTIDEAKVKIKRPVCSTCGLVKRYVLEEAAQELG 156

Query: 138 ADVLATGHYIR 148
           ADVLATGH + 
Sbjct: 157 ADVLATGHNLN 167


>gi|152974097|ref|YP_001373614.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|226738386|sp|A7GKG1|GUAA_BACCN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|152022849|gb|ABS20619.1| GMP synthase, large subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 512

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E F   VI       F       E P     +  N  +  F D  
Sbjct: 263 VMKT---------FSEGFHMNVIKIDARERFMKKLKGVEDPEQKRKIIGNEFIYVFDD-- 311

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G D LA G        + + G       +           +    +     L  
Sbjct: 312 EAAKLEGIDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|251795808|ref|YP_003010539.1| PP-loop domain protein [Paenibacillus sp. JDR-2]
 gi|247543434|gb|ACT00453.1| PP-loop domain protein [Paenibacillus sp. JDR-2]
          Length = 267

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 68/201 (33%), Gaps = 56/201 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           VVVA SGGVDS+    LLK        G +V+ VT                    ++ +A
Sbjct: 19  VVVAFSGGVDST---FLLKAAVETLGTG-NVLAVT-----------ADSETYPTSELEEA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +++   I V H V    E             Y A      C  C  ++ F  L  +  + 
Sbjct: 64  KKLAKQIRVQHEVISTSEL--------AIPGY-AENNKNRCYFCKSSL-FDHLYPLLEER 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GD 194
               L  G      +   D  + R  M    +                   +R PL   D
Sbjct: 114 SFANLVYG------VIADDKNEHRPGMQAAKERG-----------------VRGPLLEAD 150

Query: 195 MKKESVRDLAREMGLDIADKS 215
           + K+ +R+L++  GL   DK 
Sbjct: 151 LYKQEIRELSKVFGLPTWDKP 171


>gi|134298155|ref|YP_001111651.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1]
 gi|172044248|sp|A4J173|ASSY_DESRM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|134050855|gb|ABO48826.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 69/210 (32%), Gaps = 55/210 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+ A LK + GY+VI VT        A   +G   A  +    +   
Sbjct: 3   KVVLAYSGGLDTSVIIAWLKENYGYEVIAVT--------ADLGQGEELAPLEEKALQSGA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
             I    Y+ D  + F    I P           Y  G +        R +    L+ + 
Sbjct: 55  SKI----YIEDLRKEFVEDYIWPTLKAGAIYEGKYLLGTSFA------RPLIAKKLVEIA 104

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRF 190
            + GA  +A G                           DQ  F      + L     +  
Sbjct: 105 EKEGAVAVAHG---------------------ATGKGNDQVRF--ELGVKALAPHLKVIA 141

Query: 191 PLGDM---KKESVRDLAREMGLDIADKSDS 217
           P  +     +E   D A   G+ +     S
Sbjct: 142 PWREWDIRSREDAIDYAEARGIPVPVTKKS 171


>gi|312144464|ref|YP_003995910.1| NAD+ synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311905115|gb|ADQ15556.1| NAD+ synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 250

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 48/192 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DS+V A L ++  G + +G+ +                  +D  DA    + 
Sbjct: 31  VVGLSGGIDSAVTARLAQKAFGDNAMGIIM------------PCNSNREDREDALLFANK 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAG---ETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +++ + D  +     V                 +  V+    ++ + L      L   
Sbjct: 79  FALNYIITDLSD-----VYQHLLDELKRSGIKGNKMAEVNIKPRLRMTSLYYYAASLNYL 133

Query: 140 VLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           V+ T +    ++ Y    G     +                           PLG + K 
Sbjct: 134 VIGTDNRSELKIGYFTKYGDGGVDLA--------------------------PLGSLVKH 167

Query: 199 SVRDLAREMGLD 210
            V+ LARE+ + 
Sbjct: 168 EVKVLARELKIP 179


>gi|83814287|ref|YP_444548.1| NAD(+) synthase (glutamine-hydrolysing) [Salinibacter ruber DSM
           13855]
 gi|83755681|gb|ABC43794.1| NAD(+) synthase (glutamine-hydrolysing) [Salinibacter ruber DSM
           13855]
          Length = 567

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V +SGG+DS+V  AL     G + V+GVT+                +   V D++ +
Sbjct: 294 KALVGLSGGIDSAVTCALAVEALGPERVVGVTM-----------PSEISSEGSVTDSQAL 342

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
            D + +       +            +   AG  P
Sbjct: 343 ADNLGIEFKEIPIKPA--VDAFDDMLADEFAGTEP 375


>gi|304439167|ref|ZP_07399085.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372299|gb|EFM25887.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 276

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 19/129 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  ++ VA+SGG DS  +A L +    +       + ++              + +    
Sbjct: 40  KGDKIAVAISGGKDSLTLAKLFQELKKH-------KKFDFDLEFIAMDPGYKKEKLDQML 92

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C+ + +   V       ++ +     S   AGE   PC  C   ++  +L +  ++LG
Sbjct: 93  YNCEKLGIPVKV------HQSDIFE--VSERIAGE--NPCYMC-ARMRRGNLYAKAQELG 141

Query: 138 ADVLATGHY 146
            + LA GH+
Sbjct: 142 CNKLALGHH 150


>gi|294624727|ref|ZP_06703393.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600961|gb|EFF45032.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 521

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G +     +  R +  +  + +  +   
Sbjct: 274 -AEYMGVKVIRINAADRYFAK---------LEGVS---DPEAKRKIIGNLFVEIFDEESN 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|71066186|ref|YP_264913.1| argininosuccinate synthase [Psychrobacter arcticus 273-4]
 gi|119361311|sp|Q4FR79|ASSY_PSYA2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|71039171|gb|AAZ19479.1| argininosuccinate synthase [Psychrobacter arcticus 273-4]
          Length = 412

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+S++A  L+   YD   +T                  G++V  AR   +
Sbjct: 11  KIVLAYSGGLDTSIIARWLQET-YDAEVITF-----------TADIGQGEEVEPARAKAE 58

Query: 82  TINVSH-YVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + + H ++ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 59  AMGIKHIHIEDLREEFARDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 112

Query: 134 RQLGADVLATG 144
           ++  AD ++ G
Sbjct: 113 KEHNADAISHG 123


>gi|72162451|ref|YP_290108.1| argininosuccinate synthase [Thermobifida fusca YX]
 gi|119361339|sp|Q47N84|ASSY_THEFY RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|71916183|gb|AAZ56085.1| argininosuccinate synthase [Thermobifida fusca YX]
          Length = 399

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 67/202 (33%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AIDCGQGGEDMEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   + D +E F N   VP   + A      P V   +R +    L    R  GA
Sbjct: 52  LACGAVEAVIADAKEEFANDYCVPAIQANALYMDRYPLVSALSRPLIVKHLAEAARYHGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
            ++A G                   C       DQ  F            +  P+ D  M
Sbjct: 112 TMVAHG-------------------CTGK--GNDQVRFEAGLAALFPELKVLAPVRDSGM 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++     A E GL I     S
Sbjct: 151 TRDKAIAFAEEKGLPIDVTKKS 172


>gi|304316499|ref|YP_003851644.1| NAD synthase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778001|gb|ADL68560.1| NAD synthase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 275

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGGVDS+ +A + K    DV      L +S  A     S    ++  +A  +   I
Sbjct: 21  VIAFSGGVDSTFLAKVCK----DV------LNDSCLAVTATSSTYPEREFKEALELAKEI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            + H +   EE                G +  P   C  C   + FS L  V    G + 
Sbjct: 71  GIRHKIIKSEELEIE------------GFSKNPIDRCYYCKSEL-FSKLKKVADDEGIEY 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +  G          D G  R       +L                  ++ PL      K+
Sbjct: 118 VLDG------TNADDTGDFRPGRRAAKELG-----------------VKSPLLECGFTKD 154

Query: 199 SVRDLAREMGLDIADKS 215
            +R++++ +GL   +K 
Sbjct: 155 DIREMSKRLGLPTWNKP 171


>gi|154150640|ref|YP_001404258.1| exsB protein [Candidatus Methanoregula boonei 6A8]
 gi|167016434|sp|A7I7A4|QUEC_METB6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|153999192|gb|ABS55615.1| exsB protein [Methanoregula boonei 6A8]
          Length = 217

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V+ +SGG+DS+ +   L   GY+V  +T   ++  +  K++ +C        A++ C
Sbjct: 1  MKAVLILSGGMDSTTLLYDLIDQGYEVSAIT---FDYHQKHKKEIAC--------AQKTC 49

Query: 81 DTINVSHYVFDYE 93
            +++ H + +  
Sbjct: 50 AKLSIPHKIVNLS 62


>gi|294793177|ref|ZP_06758323.1| GMP synthase [Veillonella sp. 6_1_27]
 gi|294456122|gb|EFG24486.1| GMP synthase [Veillonella sp. 6_1_27]
          Length = 511

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 40/205 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++A+SGGVDSSV AAL+ +  G  +  +     +     K +G      
Sbjct: 209 DIRKTVGDGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLMRKNEGD----- 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              +         +     D E+RF +           AG   L   +  R         
Sbjct: 261 ---EVEAAFKDSGMHFIRVDAEKRFLDK---------LAG---LEDPEAKRKAIGEEFIR 305

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-L 185
                 R++G  D LA G        V + G     + +           +         
Sbjct: 306 VFEDEGRKIGSVDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGGLPAVVDF 355

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR+L  E+GL 
Sbjct: 356 KGLIEPLRNLFKDEVRELGSELGLA 380


>gi|294794793|ref|ZP_06759928.1| GMP synthase [Veillonella sp. 3_1_44]
 gi|294454155|gb|EFG22529.1| GMP synthase [Veillonella sp. 3_1_44]
          Length = 511

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 40/205 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D +V++A+SGGVDSSV AAL+ +  G  +  +     +     K +G      
Sbjct: 209 DIRKTVGDGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLMRKNEGD----- 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              +         +     D E+RF +           AG   L   +  R         
Sbjct: 261 ---EVEAAFKDSGMHFIRVDAEKRFLDK---------LAG---LEDPEAKRKAIGEEFIR 305

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-L 185
                 R++G  D LA G        V + G     + +           +         
Sbjct: 306 VFEDEGRKIGSVDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGGLPAVVDF 355

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR+L  E+GL 
Sbjct: 356 KGLIEPLRNLFKDEVRELGSELGLA 380


>gi|222087492|ref|YP_002546029.1| argininosuccinate synthase [Agrobacterium radiobacter K84]
 gi|221724940|gb|ACM28096.1| argininosuccinate synthase [Agrobacterium radiobacter K84]
          Length = 407

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 70/204 (34%), Gaps = 45/204 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + ++ G
Sbjct: 55  AELLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIAKKTG 114

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGD 194
           AD +A G                           DQ  F    +A        +  P  D
Sbjct: 115 ADAIAHG---------------------ATGKGNDQVRFELSAYALNPDI--KIIAPWRD 151

Query: 195 MK-KE--SVRDLAREMGLDIADKS 215
              K    + + A +  + +A   
Sbjct: 152 WTFKSRTDLLEFAEKHQIPVAKDK 175


>gi|149184375|ref|ZP_01862693.1| argininosuccinate synthase [Erythrobacter sp. SD-21]
 gi|148831695|gb|EDL50128.1| argininosuccinate synthase [Erythrobacter sp. SD-21]
          Length = 404

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RVV+A SGG+D+SV+A  L    G +V+  T                  G+++  AR  
Sbjct: 5   KRVVLAYSGGLDTSVIAKWLEVGRGLEVVTFT-------------ADLGQGEEIEPAREK 51

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQ 135
              + +     ++ D  E F    + P   + A  E          R +    L+ +  +
Sbjct: 52  ARAMGIPDEHIFIEDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLVEIAHE 111

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 112 TGADAIAHG 120


>gi|154706592|ref|YP_001424777.1| GMP synthase [Coxiella burnetii Dugway 5J108-111]
 gi|226738431|sp|A9KGD5|GUAA_COXBN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|154355878|gb|ABS77340.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii Dugway
           5J108-111]
          Length = 524

 Score = 57.1 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +     +V+V +SGGVDS+V A L+ +     IG      +               +
Sbjct: 220 DIQEKVGKEQVIVGLSGGVDSAVTATLVHKA----IG------DQLVCVLVDTGLLRLNE 269

Query: 73  VYDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYA---AGETPLPCVDCNRTVKFSD 128
           V +   V    +       D ++RF  A+            AGE                
Sbjct: 270 VDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQF-----------IRV 318

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                ++L    L  G      +        +  + +           +          L
Sbjct: 319 FEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHN-------VGGLPLNMELKL 371

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+GL 
Sbjct: 372 IEPLRELFKDEVRKLGLELGLP 393


>gi|187736084|ref|YP_001878196.1| ExsB family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426136|gb|ACD05415.1| ExsB family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 271

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 47/212 (22%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV--VAALLKRDGYDVIGVTLQLYNSR 58
           M  +  T    L     P+  R+ VA+SGG+DSSV   AA+       ++G      +  
Sbjct: 1   MTTTPQTPFERLRAVLLPR-KRIAVALSGGLDSSVLLAAAV------RILGA-----DHC 48

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
            A   +      ++V D+  +C  + V      +        I+P      A   PL C 
Sbjct: 49  LALTARTPYVMEEEVRDSTALCRRLGVRQEKLAFP-------ILPAL----ANNPPLRCY 97

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            C   + FS L +   ++G  +LA G  +       DD    R   + +      S FL 
Sbjct: 98  LCKHAL-FSSLAARAAEMGFPLLADGSNL-------DDLDDYRPGRKALQELGIPSPFLE 149

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           A               M KE +R LA  +GL 
Sbjct: 150 A--------------SMDKEDIRRLACRLGLP 167


>gi|134094586|ref|YP_001099661.1| GMP synthase [Herminiimonas arsenicoxydans]
 gi|226739633|sp|A4G4U7|GUAA_HERAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|133738489|emb|CAL61534.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Herminiimonas arsenicoxydans]
          Length = 539

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +   +           
Sbjct: 223 NDEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMF--------- 273

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---- 129
                  D + V+    D  ++F           + AG T     +  R +   +     
Sbjct: 274 ------ADHLGVNVIRIDAVDQFM---------GHLAGVT---DPEAKRKIIGREFVEVF 315

Query: 130 -LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +   ++  A  LA G      +     GK+   +    +        +    +     L
Sbjct: 316 QVEAGKRKNAKWLAQGTIYPDVIESAGKGKKGHTIKSHHN--------VGGLPETLNLQL 367

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L   +GL 
Sbjct: 368 LEPLRELFKDEVRQLGVALGLP 389


>gi|329768495|ref|ZP_08259984.1| GMP synthase [Gemella haemolysans M341]
 gi|328836723|gb|EGF86378.1| GMP synthase [Gemella haemolysans M341]
          Length = 514

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVAALL K  G  +I + +     RK           +++     
Sbjct: 215 DQKVLCALSGGVDSSVVAALLDKAIGDQLICMFIDHGLLRKGEAEAVMNTFSKEIE---- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                N++    D ++RF   +                 V       F +     +    
Sbjct: 271 --GGFNMNLIKVDAKDRFLGKLKGVSDPEQKRKIIGNEFVYV-----FDE--ECAKLHDV 321

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G        V + G +     +           +    +     L  PL  + K+
Sbjct: 322 PFLAQG---TLYTDVIESGTKNAQTIKSHHN-------VGGLPEDMRFSLIEPLNTLFKD 371

Query: 199 SVRDLAREMGLD 210
            VR L   +GL 
Sbjct: 372 EVRALGEALGLP 383


>gi|258543332|ref|YP_003188765.1| GMP synthase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634410|dbj|BAI00386.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637468|dbj|BAI03437.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640520|dbj|BAI06482.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643577|dbj|BAI09532.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646632|dbj|BAI12580.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649685|dbj|BAI15626.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652673|dbj|BAI18607.1| glutamine amidotransferase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655729|dbj|BAI21656.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 533

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+  +SGGVDSSV A L+       IG  +T    +       +             
Sbjct: 235 DGKVICGLSGGVDSSVAAVLIHEA----IGDQLTCIFVDHGMLRAGEADDVIKTFRG--- 287

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 N+     D  + F      V  P       G   +                   
Sbjct: 288 ----QFNIQLVHRDASDIFLKELDGVTDPEIKRKTIGRLFVEV-----------FEEEAT 332

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L GA  LA G      +          +  +           +     +    L  PL 
Sbjct: 333 KLGGAQFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMNMKLVEPLR 385

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VRDL RE+G+ 
Sbjct: 386 ELFKDEVRDLGRELGIP 402


>gi|170289791|ref|YP_001736607.1| argininosuccinate synthase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173871|gb|ACB06924.1| Argininosuccinate synthase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 412

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D++V     +  G +V+  T             G      ++   RR  +
Sbjct: 7   KVVLAYSGGLDTTVAIKWFEEQGIEVVTFT----------AELGQGAELDEIE--RRAYE 54

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
             +  HY  +  + F +  + P   + A  E   P     +R +  S L+ +  + GAD 
Sbjct: 55  AGSSKHYSLNLIDEFADVYVAPAIMANALYEGEYPISSSLSRPLIASKLVEIAEREGADA 114

Query: 141 LATG 144
           +A G
Sbjct: 115 VAHG 118


>gi|149373068|ref|ZP_01891973.1| argininosuccinate synthetase [unidentified eubacterium SCB49]
 gi|149354295|gb|EDM42863.1| argininosuccinate synthetase [unidentified eubacterium SCB49]
          Length = 397

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 13/129 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
               ++V+A SGG+D+S  A  L ++GYDV  V                    +++    
Sbjct: 2   KNSKKLVIAYSGGLDTSYCAVSLAKEGYDVHAV-----------SVNTGGFTQKEIKTIE 50

Query: 78  RVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQ 135
                + VS Y   D    F   V+              P       +  +  ++   + 
Sbjct: 51  ENAYKMGVSTYKNIDAIATFYQKVVKYLIFGNVLKNNTYPLSVSAERIIQAIEIIEYAKS 110

Query: 136 LGADVLATG 144
           +GA+ +A G
Sbjct: 111 IGAEYIAHG 119


>gi|66505538|ref|XP_396374.2| PREDICTED: argininosuccinate synthase-like [Apis mellifera]
          Length = 412

 Score = 57.1 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 29/134 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV+A SGG+D+S +   LK  GY VI   +                  +D   AR+ 
Sbjct: 5   EKKVVLAYSGGLDTSCILLWLKEKGYQVIA-YMAN------------VGQEEDFDAARKK 51

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGE-TPLPCVDCNRTVKFSDLL 130
              I      + D  E F ++ + P           Y  G     PC+          L+
Sbjct: 52  ALKIGATKVVIEDLREVFLSSFVWPAIACGLIYEDRYLLGTAIARPCIS-------EGLV 104

Query: 131 SVTRQLGADVLATG 144
            + +   A ++A G
Sbjct: 105 RLAKGENAHIIAHG 118


>gi|319779430|ref|YP_004130343.1| GMP synthase [Taylorella equigenitalis MCE9]
 gi|317109454|gb|ADU92200.1| GMP synthase [Taylorella equigenitalis MCE9]
          Length = 532

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 31/201 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   +  V++ +SGGVDSSV AAL+ R  G  +  V     +     + +G       
Sbjct: 221 IKKTVGEDEVILGLSGGVDSSVAAALIHRAIGDKLTCVF---VDHGLLREHEGDQVM--- 274

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
               + + + + V     D   +F      V  P       G   +              
Sbjct: 275 ----QALNENLGVKIIRVDATNQFLGKLEGVSDPEQKRKIIGREFVEVFQA--------- 321

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +   A  LA G      +        + +  +           +    +     L 
Sbjct: 322 -EAAKLPNAKWLAQGTIYPDVIESAGSKTGKAVTIKSHHN-------VGGLPETLNLKLL 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR L   +G+ 
Sbjct: 374 EPLRELFKDEVRKLGLALGIP 394


>gi|212212279|ref|YP_002303215.1| GMP synthase [Coxiella burnetii CbuG_Q212]
 gi|226738430|sp|B6IZE2|GUAA_COXB2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|212010689|gb|ACJ18070.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii CbuG_Q212]
          Length = 524

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +     +V+V +SGGVDS+V A L+ +     IG      +               +
Sbjct: 220 DIQEKVGKEQVIVGLSGGVDSAVTATLVHKA----IG------DQLVCVLVDTGLLRLNE 269

Query: 73  VYDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYA---AGETPLPCVDCNRTVKFSD 128
           V +   V    +       D ++RF  A+            AGE                
Sbjct: 270 VDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQF-----------IRV 318

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                ++L    L  G      +        +  + +           +          L
Sbjct: 319 FEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHN-------VGGLPLNMELKL 371

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+GL 
Sbjct: 372 IEPLRELFKDEVRKLGLELGLP 393


>gi|29654638|ref|NP_820330.1| GMP synthase [Coxiella burnetii RSA 493]
 gi|44887951|sp|Q83BZ6|GUAA_COXBU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29541906|gb|AAO90844.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii RSA 493]
          Length = 524

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +     +V+V +SGGVDS+V A L+ +     IG      +               +
Sbjct: 220 DIQEKVGKEQVIVGLSGGVDSAVTATLVHKA----IG------DQLVCVLVDTGLLRLNE 269

Query: 73  VYDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYA---AGETPLPCVDCNRTVKFSD 128
           V +   V    +       D ++RF  A+            AGE                
Sbjct: 270 VDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQF-----------IRV 318

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                ++L    L  G      +        +  + +           +          L
Sbjct: 319 FEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHN-------VGGLPLNMELKL 371

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+GL 
Sbjct: 372 IEPLRELFKDEVRKLGLELGLP 393


>gi|290969038|ref|ZP_06560573.1| GMP synthase (glutamine-hydrolyzing) [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780994|gb|EFD93587.1| GMP synthase (glutamine-hydrolyzing) [Megasphaera genomosp. type_1
           str. 28L]
          Length = 511

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 34/202 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +   + +VV+A+SGGVDSSV AAL+ R  G  +  +     +     K +G      
Sbjct: 209 DIRRTVGNGKVVLALSGGVDSSVAAALISRAVGKQLTCIF---VDHGLMRKNEGD----- 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              +  R   +  ++    D   RF            A    P       R +   + + 
Sbjct: 261 ---EVERAFQSSGMNFIRVDAAARF--------LGKLAHVGDPE----AKRKIIGEEFIR 305

Query: 132 VTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDL 188
           V  + G  + A     +  +Y    + G     + +           +           L
Sbjct: 306 VFEEEGRKIGAVDFLAQGTIYPDVIESGAGDAAVIKSHHN-------VGGLPAVVDFKGL 358

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR+L  E+GL 
Sbjct: 359 IEPLRNLFKDEVRELGSELGLP 380


>gi|225022593|ref|ZP_03711785.1| hypothetical protein CORMATOL_02635 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681956|ref|ZP_07404760.1| argininosuccinate synthase [Corynebacterium matruchotii ATCC 14266]
 gi|224944501|gb|EEG25710.1| hypothetical protein CORMATOL_02635 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658429|gb|EFM47932.1| argininosuccinate synthase [Corynebacterium matruchotii ATCC 14266]
          Length = 398

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G +V+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAKMTGGEVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F N   +P   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVEAVVIDAKDEFANNYCLPTIRANGMYMKQYPLVSAISRPLIVKHLVQAAQEFGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             ++ G                    +  D  R +  F     + ++     P  D    
Sbjct: 112 THVSHG-----------------CTGKGNDQVRFEVGFRSLAPELEI---IAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I     S
Sbjct: 152 RDKAIAFAEEINLPIEQSKKS 172


>gi|29840331|ref|NP_829437.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlamydophila caviae GPIC]
 gi|33301148|sp|Q822V6|GUAA_CHLCV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29834680|gb|AAP05315.1| GMP synthase [Chlamydophila caviae GPIC]
          Length = 512

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 52/209 (24%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K  +  RV++ +SGGVDSSV+A LL             L +               +V 
Sbjct: 212 EKVGETERVLLGLSGGVDSSVLAVLLHNA----------LGDRLSCVFVDTGLLRKNEVE 261

Query: 75  DARRVCDTINVSHYVFDYEERF------------RNAVIVPFASSYAAGETPLPCVDC-N 121
           + ++   ++ +   V D  E+F            +  VI           +    V    
Sbjct: 262 EVKQQFSSLGLEILVVDASEKFFHDLSGIEDPEQKRKVIGAAFIEVFDEVSRNLDVQWLA 321

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           +   +SD++   +   A  +   H+                              +    
Sbjct: 322 QGTIYSDVIESAKSCDATQVIKSHHN-----------------------------VGGLP 352

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           ++    L  PL  + K+ VR L + +GL 
Sbjct: 353 EKLNLKLLEPLRFLFKDEVRALGKVLGLP 381


>gi|303246918|ref|ZP_07333194.1| NAD+ synthetase [Desulfovibrio fructosovorans JJ]
 gi|302491625|gb|EFL51508.1| NAD+ synthetase [Desulfovibrio fructosovorans JJ]
          Length = 580

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V + +SGG+DSS+ A +     G + V GV +                +   + DA+ + 
Sbjct: 319 VCIGLSGGIDSSLTAVIAADALGPENVFGVAM-----------PTRYSSDDSLEDAKELA 367

Query: 81  DTINVSHYVFDYEERFR 97
           + + ++ +V   EE F+
Sbjct: 368 EKLGITFHVVAIEEIFK 384


>gi|296136217|ref|YP_003643459.1| GMP synthase, large subunit [Thiomonas intermedia K12]
 gi|295796339|gb|ADG31129.1| GMP synthase, large subunit [Thiomonas intermedia K12]
          Length = 532

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 68/200 (34%), Gaps = 42/200 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGDLVMDMF-------AG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E F           + AG T     +  R +     + V      +L 
Sbjct: 275 KLHAKVIRVDASELFL---------GHLAGVT---DPEKKRKIIGGLFVDVFKAEAAKLK 322

Query: 137 -----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRF 190
                GA  LA G      +  G    ++ +  +           +     +QL   L  
Sbjct: 323 GDGAKGAKWLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L   +GL 
Sbjct: 375 PLRELFKDEVRELGVALGLP 394


>gi|52219052|ref|NP_001004603.1| argininosuccinate synthase [Danio rerio]
 gi|82198389|sp|Q66I24|ASSY_DANRE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|51858476|gb|AAH81578.1| Argininosuccinate synthetase 1 [Danio rerio]
 gi|158254326|gb|AAI54283.1| Argininosuccinate synthetase 1 [Danio rerio]
          Length = 414

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L      +                AR+  + 
Sbjct: 6   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQDEDFDV------------ARKKAEK 52

Query: 83  INV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSVT 133
           +     ++ D    F    I P   + A  E           PC+   +       + + 
Sbjct: 53  LGAKKVFIEDLRSEFVQEFIWPALQANALYEDRYLLGTSIARPCIARRQ-------VQIA 105

Query: 134 RQLGADVLATG 144
           ++ GA  ++ G
Sbjct: 106 QREGAQYVSHG 116


>gi|261345936|ref|ZP_05973580.1| GMP synthase [Providencia rustigianii DSM 4541]
 gi|282566021|gb|EFB71556.1| GMP synthase [Providencia rustigianii DSM 4541]
          Length = 525

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++A+SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LKEQIGDDHVLLALSGGVDSSVTALLLHRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFS 127
           + +A +V +          +  +F   +I       F ++ A    P         V   
Sbjct: 267 LNEAEQVMEM---------FAGKFDLNIIHAKAQDRFMNALAGISDPEEKRKKIGHVFIE 317

Query: 128 DLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                + +L     LA G      +        +  + +           +         
Sbjct: 318 VFDEESSKLPNIKWLAQGTIYPDIIESAASATGKAHVIKSHHN-------VGGLPDDMKL 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR +  E+GL 
Sbjct: 371 GLVEPLKELFKDEVRKIGLELGLP 394


>gi|212703506|ref|ZP_03311634.1| hypothetical protein DESPIG_01551 [Desulfovibrio piger ATCC 29098]
 gi|212673074|gb|EEB33557.1| hypothetical protein DESPIG_01551 [Desulfovibrio piger ATCC 29098]
          Length = 514

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D  VV A+SGG+DS+VVA LL +  G+ +  + +                   
Sbjct: 210 EMAEKIGDKHVVCALSGGIDSTVVAVLLHKAIGHRLHCIFVDN--------------GLL 255

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDL 129
            + +   V   +      FD    F  A    F       E P     +  +  +     
Sbjct: 256 RLNEGEEVVSYLR---EHFDLNLNFVQA-QDRFLDLLKGVEDPEKKRKIIGHTFI--DIF 309

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L   + LA G  +   +      K    + +           +    +     L
Sbjct: 310 DEEAKKLPEVEYLAQG-TLYPDVIESVSHKGPSAVIKSHHN-------VGGLPETMKLKL 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +A E+G+ 
Sbjct: 362 VEPLRELFKDEVRKVAAELGMP 383


>gi|158337547|ref|YP_001518722.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acaryochloris marina MBIC11017]
 gi|158307788|gb|ABW29405.1| GMP synthase [Acaryochloris marina MBIC11017]
          Length = 541

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSS +A LL +     IG  L      +   RK        ++     
Sbjct: 237 NKRVLLALSGGVDSSTLAFLLHKA----IGDNLTCMFIDQGFMRKLEPERLIKLFR---- 288

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            D  ++        +RF   +                    +  ++       +R+LG  
Sbjct: 289 -DQFHIPVEYVMARDRFLERLNGITDPEEKRKR------IGHEFIQV--FEEESRRLGPF 339

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D         R     +   + +    +     L  PL  + K+
Sbjct: 340 DYLAQGTLYPDVIESADTNVDPATGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFKD 398

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 399 EVRKVGRSLGLP 410


>gi|152978572|ref|YP_001344201.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus succinogenes 130Z]
 gi|226738374|sp|A6VMR9|GUAA_ACTSZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150840295|gb|ABR74266.1| GMP synthase, large subunit [Actinobacillus succinogenes 130Z]
          Length = 523

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
                  D   ++    + EERF +A           G       +  R +     + V 
Sbjct: 277 -------DKFGLNIIRVNAEERFLDA---------LKGIH---DPEAKRKMIGKVFVDVF 317

Query: 133 ----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +Q     LA G      +        +  + +           +          L
Sbjct: 318 DEESHKQTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGL 370

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 371 VEPLRELFKDEVRKIGLALGLP 392


>gi|323698543|ref|ZP_08110455.1| PP-loop domain protein [Desulfovibrio sp. ND132]
 gi|323458475|gb|EGB14340.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132]
          Length = 305

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + R++VA+SGG DS  +   LK  GYDV G+ + L           S  A + V D   
Sbjct: 46  HEDRILVALSGGKDSLALMLELKLQGYDVTGLHIDL------GIPNSSEKARRKVEDF-- 97

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    +   VF+         I P    Y       P       +K      +  + G 
Sbjct: 98  -CTLHGLPLRVFEMAA--WGLPI-PDVKKYVK----RPVCAVCGKMKRHHFNRIAVEEGF 149

Query: 139 DVLATGHYI 147
           DVLATGH +
Sbjct: 150 DVLATGHNL 158


>gi|317131257|ref|YP_004090571.1| asparagine synthase [Ethanoligenens harbinense YUAN-3]
 gi|315469236|gb|ADU25840.1| asparagine synthase [Ethanoligenens harbinense YUAN-3]
          Length = 272

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 45/239 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDSS    LL+    D +GV     +   A   + +    +++ +A  +   
Sbjct: 22  VAVAFSGGVDSS---FLLRSA-CDALGV-----SHVLAVTARSATYPERELREAVALAKA 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V H V   EE           + +    T   C  C   + F  + +V  + G   +A
Sbjct: 73  FGVQHEVIRSEEL--------DVAGFENNPTD-RCYLCKNEL-FHKIRAVADRHGVAEIA 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G        + D G  R  M    +               +L           K  +R 
Sbjct: 123 EG------SNLDDIGDFRPGMKAVAEQG-----IHSPLRAAKLA----------KAEIRA 161

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN---GQILGRHNG 258
           L+RE+GL   DK      C   +  Y + + R       E + + L+    Q+  RH+G
Sbjct: 162 LSRELGLPTWDKPSF--ACLSSRIPYGEKITREKLRAIDEAEQLLLDMGFRQVRVRHHG 218


>gi|14591705|ref|NP_143793.1| hypothetical protein PH1968 [Pyrococcus horikoshii OT3]
 gi|3258412|dbj|BAA31095.1| 273aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 273

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 25/127 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + +VA SGG DS V   L K     DV  V   + +            A Q + +A+ V 
Sbjct: 54  KAIVAYSGGKDSIVALYLAKEKYSIDVEAV---MVDHGF--------IAPQAIKNAKNVA 102

Query: 81  DTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             ++V   +   DY + FR A++          +   PC  C+R      L     + G 
Sbjct: 103 KYLDVPLTIIKRDYSDIFREALL----------KAKSPCRKCSRRT-MEILRKYALKKGY 151

Query: 139 DVLATGH 145
             + TGH
Sbjct: 152 RYMITGH 158


>gi|289422705|ref|ZP_06424545.1| NAD+ synthetase [Peptostreptococcus anaerobius 653-L]
 gi|289156884|gb|EFD05509.1| NAD+ synthetase [Peptostreptococcus anaerobius 653-L]
          Length = 252

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 41/193 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+V +SGG+DS+VVA L+K+            + +             QD  DA +V D 
Sbjct: 27  VIVGISGGIDSAVVAYLIKKA-----------FPNDSMGVILNIKSNPQDRVDAMKVIDG 75

Query: 83  INVSH--YVFDY-EERFRNAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + +   V D  +      V         Y      +   +    ++ S + ++   +G
Sbjct: 76  CGIEYLELVLDEPQGMILEMVKDKLDEKGLYRPETRKMSDANLRARIRMSTIYTIANNMG 135

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                        L  G D      +      +    Y               PL ++ K
Sbjct: 136 Y------------LVAGTDNA--AELLTGYFTK----YGDGGVDF-------LPLANLTK 170

Query: 198 ESVRDLAREMGLD 210
             V + A+E+G+ 
Sbjct: 171 AEVYEWAKELGIH 183


>gi|94500816|ref|ZP_01307345.1| argininosuccinate synthase [Oceanobacter sp. RED65]
 gi|94427138|gb|EAT12119.1| argininosuccinate synthase [Oceanobacter sp. RED65]
          Length = 405

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV+A  L+ + Y+   VT                  G+++  AR+  +
Sbjct: 6   KIVLAYSGGLDTSVIAKWLQEE-YNAEIVTF-----------TADLGQGEELEPARKKAE 53

Query: 82  TINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +      D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGIKEIFIDDLREEFARDFVFPMFRANAIYEGEYYLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD +A G
Sbjct: 108 NETGADAIAHG 118


>gi|93006688|ref|YP_581125.1| argininosuccinate synthase [Psychrobacter cryohalolentis K5]
 gi|119361312|sp|Q1Q9L2|ASSY_PSYCK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|92394366|gb|ABE75641.1| argininosuccinate synthase [Psychrobacter cryohalolentis K5]
          Length = 412

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+S++A  L+   YD   +T                  G++V  AR   +
Sbjct: 11  KIVLAYSGGLDTSIIARWLQET-YDAEVITF-----------TADIGQGEEVEPARAKAE 58

Query: 82  TINVSH-YVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + + H ++ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 59  AMGIKHIHIEDLREEFARDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 112

Query: 134 RQLGADVLATG 144
           ++  AD ++ G
Sbjct: 113 KEHNADAISHG 123


>gi|119383251|ref|YP_914307.1| argininosuccinate synthase [Paracoccus denitrificans PD1222]
 gi|171704464|sp|A1AZB7|ASSY_PARDP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119373018|gb|ABL68611.1| argininosuccinate synthase [Paracoccus denitrificans PD1222]
          Length = 408

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 20/136 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   PK  +VV+A SGG+D+S++   L+   G +VI  T                  G++
Sbjct: 1   MSDAPK--KVVLAYSGGLDTSIILKWLQTEYGCEVITFT-------------ADLGQGEE 45

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSD 128
           +  AR+  + + +     ++ D  E F    + P   + A  E          R +    
Sbjct: 46  LEPARQKAELLGIKPENIHIVDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKH 105

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  Q GAD +A G
Sbjct: 106 LVEIAHQHGADAVAHG 121


>gi|315607410|ref|ZP_07882408.1| argininosuccinate synthase [Prevotella buccae ATCC 33574]
 gi|315250910|gb|EFU30901.1| argininosuccinate synthase [Prevotella buccae ATCC 33574]
          Length = 413

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +N K  +VVVA SGG+D+S     L +DG++V                     + + 
Sbjct: 11  DMAEN-KKKKVVVAFSGGLDTSYTVMKLSQDGWEVYAA-----------CANTGGFSAEQ 58

Query: 73  VYDARRVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DL 129
           +         +    YV  D  + +    +              P    +  + F    +
Sbjct: 59  LKTNEENAYKLGAKAYVTLDVTQEYYEKSLKYMIFGNVLRNNCYPISVSSERI-FQAIAI 117

Query: 130 LSVTRQLGADVLATG 144
               +++GAD +A G
Sbjct: 118 ARYAKEIGADAIAHG 132


>gi|300813340|ref|ZP_07093691.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512483|gb|EFK39632.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 504

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 72/210 (34%), Gaps = 39/210 (18%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKG 65
            ++   D+ K     +V++A+SGGVDSSV AAL+ +  G ++  +     +     K +G
Sbjct: 197 AKIAIEDIRKKVGKGKVLLALSGGVDSSVTAALVSKAIGENLTCIF---VDHGLMRKNEG 253

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCV-DCN 121
                    +         +     D EERF N +             GE  +    +  
Sbjct: 254 D--------EVEEAFKNSGMKFIRIDAEERFLNRLKTVTDPERKRKIIGEEFIRVFEEEG 305

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           R +K             D LA G      +  G  G   +               +    
Sbjct: 306 RKIK-----------SVDFLAQGTIYPDVIESGLGGAVIKSHHN-----------VGGLP 343

Query: 182 QQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                 +L  PL  + K+ VR L RE+GL 
Sbjct: 344 DVVDFKELIEPLRMLFKDEVRKLGRELGLA 373


>gi|283957207|ref|ZP_06374669.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791279|gb|EFC30086.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 236

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 43/196 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN +   VV+ +SGG+DS++VA L KR    +V  + +                   ++ 
Sbjct: 19  KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLM-----------PTQISNKANLE 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   + 
Sbjct: 68  DALRLCVDLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRMSLLYDYS- 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                       +++ L VG   K   ++              + T    L     P+G 
Sbjct: 121 -----------ALKNSLVVGTSNKSELLL-------------GYGTIYGDLACAFNPIGS 156

Query: 195 MKKESVRDLAREMGLD 210
           + K  +  LA+ + L 
Sbjct: 157 LYKSEIYALAKYLNLH 172


>gi|158320074|ref|YP_001512581.1| PP-loop domain-containing protein [Alkaliphilus oremlandii OhILAs]
 gi|158140273|gb|ABW18585.1| PP-loop domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 285

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 29/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ +A+SGG DS ++A L   LK+ G   ++V  + +                   +   
Sbjct: 55  KIGIAISGGKDSLLLAKLFQELKKHGRDNFEVEYIAM-----DPGYHESIKKLLIDN--- 106

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+ +N+  ++F+  + F+  V    A  Y       PC  C   ++   L    ++
Sbjct: 107 ----CNHLNIPVHIFE-SKIFK--VAENIAKEY-------PCFMC-AKMRRGALYQKAQE 151

Query: 136 LGADVLATGHYIR 148
           LG + LA GH+  
Sbjct: 152 LGCNKLALGHHFN 164


>gi|91204109|emb|CAJ71762.1| strongly similar to GMP synthase (glutamine-hydrolyzing)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 516

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 37/205 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
           D+++   + RVV  +SGGVDS+V AAL+ +  G  +  +      L+ + + +  K    
Sbjct: 211 DINRQVGNGRVVCGLSGGVDSAVTAALIHKAIGNRLSCIFVDNGLLRNFEAEEVVKTFKE 270

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             +                  +V   ++RF   +                 +  +  +K 
Sbjct: 271 NFSAD---------------LHVVRAQDRFLGKLKGVSDPEKKRK------IIGHEFIKV 309

Query: 127 SDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
               +  +++     LA G      +          +  +           +    ++  
Sbjct: 310 --FKNEAQKISDVQFLAQGTLYPDVIESIPAHGGPTVTIKSHHN-------VGGLPEELG 360

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL  + K+ VR +  E+GL 
Sbjct: 361 FELVEPLRFLFKDEVRKIGEELGLP 385


>gi|254228658|ref|ZP_04922082.1| GMP synthase (glutamine-hydrolyzing) [Vibrio sp. Ex25]
 gi|262395109|ref|YP_003286963.1| GMP synthase (glutamine-hydrolyzing) [Vibrio sp. Ex25]
 gi|151938837|gb|EDN57671.1| GMP synthase (glutamine-hydrolyzing) [Vibrio sp. Ex25]
 gi|262338703|gb|ACY52498.1| GMP synthase (glutamine-hydrolyzing) [Vibrio sp. Ex25]
          Length = 517

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF          +      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEDRF--------LEALKGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +     +    L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDEMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|254442105|ref|ZP_05055581.1| conserved hypothetical protein TIGR00268 [Verrucomicrobiae
           bacterium DG1235]
 gi|198256413|gb|EDY80721.1| conserved hypothetical protein TIGR00268 [Verrucomicrobiae
           bacterium DG1235]
          Length = 274

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 54/201 (26%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++A SGGVDS++V  L ++  G +  IG    + +S              D+ +A+  C 
Sbjct: 25  IIAFSGGVDSALVLYLARQHLGKERAIGC---ISDSPS--------LKRSDLEEAKAFCR 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTV--KFSDLLSVTRQLGA 138
             ++   + + +E              A    P   C  C   +    S LL        
Sbjct: 74  EHDIRLEIINTKE----------IDDEAYYTNPVNRCYACKSHLYQNLSSLLER------ 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
                G    +     D G  R  +                        +  PL +  + 
Sbjct: 118 ---FPGFVALNGTNTDDLGDYRPGLQAASQQA-----------------VCSPLAESGLD 157

Query: 197 KESVRDLAREMGLDIADKSDS 217
           K +VR LA+ +GL   DK  S
Sbjct: 158 KAAVRSLAKRLGLANWDKPAS 178


>gi|188995854|ref|YP_001930106.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277]
 gi|226695545|sp|B2RMB4|TILS_PORG3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|188595534|dbj|BAG34509.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277]
          Length = 454

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 43/223 (19%)

Query: 23  VVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           V+VA+SGG DS  VA L  L+  GY+ +      +     S             DA  V 
Sbjct: 26  VLVALSGGADS--VALLCVLRELGYETVAAHCNFHLRGVESD-----------EDAAFVE 72

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C  ++V  +  D+     + V       YA   +    +   R +++     + ++L 
Sbjct: 73  GLCRDLDVPLHRIDF-----DTV------RYARERSISIEMAA-RELRYEWFGLLRKELA 120

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + +A  H+        +       +CR   +       L     ++   +  PL D  +
Sbjct: 121 IEYVAVAHHA-----DDNAETMVLNLCRGTGIS-----GLCGMPYKRNDGIVRPLLDATR 170

Query: 198 ESVRDLAREMGLDIADKSDSQDICF---VQQGKYFDVVKRINA 237
           + +     +  +     S ++D  F   + + +   ++K +N 
Sbjct: 171 DEIEAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNP 213


>gi|11498054|ref|NP_069278.1| succinoglycan biosynthesis regulator (exsB) [Archaeoglobus fulgidus
           DSM 4304]
 gi|74514120|sp|O29807|QUEC_ARCFU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|2650185|gb|AAB90792.1| succinoglycan biosynthesis regulator (exsB) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 239

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 35/201 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS +   L   GY+V  +T                   +++  A +V 
Sbjct: 1   MKAVMLLSGGIDSSTLLYYLLDGGYEVHALTFFY-----------GQKHSKEIESAEKVA 49

Query: 81  DTINVSHYVFDYEERF----------RNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDL 129
               V H   D                  V   F S      T +P    NR +   S  
Sbjct: 50  KAAKVRHLKVDISTIHDLISYGALTGEEEVPKAFYSEEVQRRTIVP----NRNMILLSIA 105

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                ++GA  +   HY             R+   + +D        ++        ++R
Sbjct: 106 AGYAVKIGAKEV---HYAAHLSDYSIYPDCRKEFVKALDTA------VYLANIWTPVEVR 156

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            P  DM K  +  L  ++G+ 
Sbjct: 157 APFVDMTKADIVRLGLKLGVP 177


>gi|319404602|emb|CBI78208.1| GMP synthase [Bartonella rochalimae ATCC BAA-1498]
          Length = 518

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 56/205 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----L-QLYNSRKASKRKGSCCAGQDVY 74
            V+  +SGGVDSSV A LL    G  +  V      + +       +  +G         
Sbjct: 223 HVICGLSGGVDSSVAAILLHEAVGDQLTCVFVDHGLMRKNEVEEVLTLFRG--------- 273

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                    N+     +  + F NA           GET     +  R +     + V  
Sbjct: 274 -------HYNIKLIHVNAADMFINA---------LEGET---DPEKKRKIIGRLFIEVFE 314

Query: 135 Q-----LGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +      GA+ LA        I S   +G+    +                +    ++  
Sbjct: 315 EETKKIRGAEFLAQGTLYPDVIESVSAIGEAVTIKSHHN------------VGGLPERMK 362

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR L RE+GL 
Sbjct: 363 MQLVEPLRELFKDDVRSLGRELGLP 387


>gi|284162492|ref|YP_003401115.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012489|gb|ADB58442.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
          Length = 308

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
            +      R+ +A+SGG DS   + V         DV      L+        +G     
Sbjct: 42  FNMIESGDRIAIALSGGKDSVTLTYVLHKFLSKRRDVE-----LFAITVDEGIEGYRPPT 96

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             +  AR++   + + H +  +++ F                   PC  C    K+  L 
Sbjct: 97  VKI--ARKITSELGIEHIIVSFKDYF-----GMTLDEMVKLGDKKPCTYCGVFRKY-LLN 148

Query: 131 SVTRQLGADVLATGHYI 147
              R++GA  LATGH +
Sbjct: 149 KTAREMGATKLATGHNL 165


>gi|241889310|ref|ZP_04776613.1| GMP synthase [Gemella haemolysans ATCC 10379]
 gi|241864147|gb|EER68526.1| GMP synthase [Gemella haemolysans ATCC 10379]
          Length = 461

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVAALL K  G  +I + +     RK           +++     
Sbjct: 162 DQKVLCALSGGVDSSVVAALLDKAIGDQLICMFIDHGLLRKGEAEAVMNTFSKEIE---- 217

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                N++    D ++RF   +                 V       F +     +    
Sbjct: 218 --GGFNMNLIKVDAKDRFLGKLKGVSDPEQKRKIIGNEFVYV-----FDE--ECAKLHDV 268

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G        V + G +     +           +    +     L  PL  + K+
Sbjct: 269 PFLAQG---TLYTDVIESGTKNAQTIKSHHN-------VGGLPEDMRFSLIEPLNTLFKD 318

Query: 199 SVRDLAREMGLD 210
            VR L   +GL 
Sbjct: 319 EVRALGEALGLP 330


>gi|219870557|ref|YP_002474932.1| GMP synthase [Haemophilus parasuis SH0165]
 gi|254800101|sp|B8F3T2|GUAA_HAEPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|219690761|gb|ACL31984.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus parasuis SH0165]
          Length = 523

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|170754234|ref|YP_001779731.1| hypothetical protein CLD_0682 [Clostridium botulinum B1 str. Okra]
 gi|169119446|gb|ACA43282.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum B1
           str. Okra]
 gi|322804375|emb|CBZ01925.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           botulinum H04402 065]
          Length = 268

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 52/231 (22%)

Query: 19  KDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD++ V VA SGGVDS+    LL +   + +G      ++  +           ++ +AR
Sbjct: 15  KDLKSVAVAFSGGVDST----LLLKAAKEALG------DNAISITIVSPYIPKWEIREAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            + D I +  Y  +           P      +     P   C  C ++V F+ +  + R
Sbjct: 65  ELVDKIGIKSYFVEV----------PMLEEIRS----NPEDRCYICKKSV-FNKIKDLAR 109

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G   +  G          DD K  R   R +                 L +       
Sbjct: 110 EKGIKYIVDGTNA-------DDTKDYRPGMRALKEL--------DVKSPLLDNSI----- 149

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             KE +R L++E+ LD  DK      C + +  Y   +K  +     + ++
Sbjct: 150 -NKEEIRVLSKELQLDTWDKP--AYACLLSRIPYNQKIKEKDLDRIEKAEV 197


>gi|294340452|emb|CAZ88833.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) (GMPS) [Thiomonas sp. 3As]
          Length = 532

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 42/200 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDHLTCVF---VDHGLLRLNEGDLVMDMF-------AG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E F             AG T     +  R +     + V      +L 
Sbjct: 275 KLHAKVIRVDASELFLGQ---------LAGVT---DPEKKRKIIGGLFVDVFKAEAAKLK 322

Query: 137 -----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRF 190
                GA  LA G      +  G    ++ +  +           +     +QL   L  
Sbjct: 323 GDGAKGAKWLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L   +GL 
Sbjct: 375 PLRELFKDEVRELGVALGLP 394


>gi|33862318|ref|NP_893878.1| GMP synthase [Prochlorococcus marinus str. MIT 9313]
 gi|44887937|sp|Q7V9A9|GUAA_PROMM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33640431|emb|CAE20220.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 528

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A+SGGVDSS +A LLK+     IG  L      +   RKG      D +D    
Sbjct: 224 QKRVLLALSGGVDSSTLAFLLKKA----IGDQLTCMFIDQGFMRKGEPEFLMDFFD---- 275

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +++    +  +RF      +I P              +     ++       + +L
Sbjct: 276 -QKFHINVEYINARQRFISKLKGIIDP--EEKRK-------IIGTEFIRV--FEEESNRL 323

Query: 137 G-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  D LA G  Y       G +   +      + ++   +  +    +     L  PL  
Sbjct: 324 GPFDYLAQGTLYPDVIESSGTNIDPKTGERVAVKIKSHHN--VGGLPKDLQFKLVEPLRR 381

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 382 LFKDEVRKVGRALGLP 397


>gi|17230338|ref|NP_486886.1| GMP synthase [Nostoc sp. PCC 7120]
 gi|44887971|sp|Q8YT80|GUAA_ANASP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|17131940|dbj|BAB74545.1| GMP synthase (glutamine-hydrolyzing) [Nostoc sp. PCC 7120]
          Length = 540

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 37/201 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGSCCAGQDV 73
           D RV++A+SGGVDSS +A L+ +  G  +  V      ++ Y   +  K           
Sbjct: 236 DKRVLLALSGGVDSSTLAFLMHKAIGDQLTCVFIDQGFMRKYEPERLVKLFQ-------- 287

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  +  ++     +  +RF +    V  P       G                   
Sbjct: 288 -------EQFHIPVEYVNARDRFLDIMSGVTDPEEKRRRIGHEF-----------IQVFE 329

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             ++ LG  D LA G      +   D     +   R     +   + +    +     L 
Sbjct: 330 ETSKNLGPFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSH-HNVGGLPKDLRFKLV 388

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR + R +GL 
Sbjct: 389 EPLRKLFKDEVRKVGRSVGLP 409


>gi|227355887|ref|ZP_03840279.1| GMP synthase [Proteus mirabilis ATCC 29906]
 gi|227163875|gb|EEI48777.1| GMP synthase [Proteus mirabilis ATCC 29906]
          Length = 536

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++A+SGGVDSSV A LL R  G  +  V +     R     +        
Sbjct: 232 LKQQIGDDHVILALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRLNEAEQVMAMFKGK 291

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
                     +N+ H   + E+RF  A           GE      +  R +        
Sbjct: 292 FD--------LNIIH--VEAEDRFLTA---------LKGEN---DPEKKRKIIGHTFIEI 329

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +L     LA G      +        +  + +           +    +     
Sbjct: 330 FDEEAVKLPQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEDMKLG 382

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR +  E+GL 
Sbjct: 383 LVEPLKELFKDEVRKIGLELGLP 405


>gi|167761978|ref|ZP_02434105.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC
           43183]
 gi|167700210|gb|EDS16789.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC
           43183]
          Length = 431

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 22/126 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+VA+SGG DS V    L +  GYD        +     S R        D    R++C
Sbjct: 21  KVLVALSGGADS-VALLRLLQASGYDCEAAHCNFHLRGAESDR--------DEAFVRQLC 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               V  +               F ++  A E  +      R +++     + +++ AD 
Sbjct: 72  VKQQVPLHTV------------HFDTARTAEERHISIEMAARELRYGWFEEIRQKINADA 119

Query: 141 LATGHY 146
           +A  H+
Sbjct: 120 IAVAHH 125


>gi|329942917|ref|ZP_08291696.1| guaA GMP synthetase [Chlamydophila psittaci Cal10]
 gi|313848086|emb|CBY17085.1| GMP synthase [Chlamydophila psittaci RD1]
 gi|325506895|gb|ADZ18533.1| GMP synthase [Chlamydophila psittaci 6BC]
 gi|328815177|gb|EGF85166.1| guaA GMP synthetase [Chlamydophila psittaci Cal10]
 gi|328914757|gb|AEB55590.1| GMP synthase [Chlamydophila psittaci 6BC]
          Length = 512

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 40/203 (19%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +K  +  RV++A+SGGVDSSV+A LL R           L +               +  
Sbjct: 212 EKVGETERVLLALSGGVDSSVLAVLLHRA----------LGDRLSCVFVDTGLLRKGEAQ 261

Query: 75  DARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           + +++  ++ +   V D  E+F      V  P                  R V  +  + 
Sbjct: 262 EVKQLFASLGLEVIVEDASEKFFRDLSGVYDPELK---------------RKVIGAAFVD 306

Query: 132 V----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           V    +R L    LA G      +            C    + +   + +    ++    
Sbjct: 307 VFDNISRDLNVQWLAQGTIYSDVIESAKS-------CDATQVIKSH-HNVGGLPEKLNLK 358

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ +R L + +GL 
Sbjct: 359 LLEPLRFLFKDEIRALGKTLGLP 381


>gi|289577867|ref|YP_003476494.1| NAD+ synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527580|gb|ADD01932.1| NAD+ synthetase [Thermoanaerobacter italicus Ab9]
          Length = 543

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A  L   D  K     + VV +SGG+DS+VV A+     G + V  V++        
Sbjct: 270 VYNALVLGVRDYCKKSGFKKAVVGLSGGIDSAVVCAIAVEALGKENVFAVSM-------- 321

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
                   +     DAR + D + +   V   E  F 
Sbjct: 322 ---PSRYSSEGSKSDARILADNLGIEFRVIPIEPVFE 355


>gi|167855486|ref|ZP_02478250.1| GMP synthase (glutamine-hydrolyzing) [Haemophilus parasuis 29755]
 gi|167853415|gb|EDS24665.1| GMP synthase (glutamine-hydrolyzing) [Haemophilus parasuis 29755]
          Length = 523

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|114562316|ref|YP_749829.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella frigidimarina NCIMB 400]
 gi|122300411|sp|Q085S4|GUAA_SHEFN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114333609|gb|ABI70991.1| GMP synthase (glutamine-hydrolyzing) [Shewanella frigidimarina
           NCIMB 400]
          Length = 525

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L K   D  V++ +SGGVDSSVVA LL R  G  +  V      L+L  + +  +  G  
Sbjct: 221 LKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLNEAEQVLEMFG-- 278

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                        D   ++    D E RF +          A      P  +  R +   
Sbjct: 279 -------------DHFGLNIVHVDAENRFLD----------AMAGEAEP--EAKRKIIGR 313

Query: 128 DLLSVTRQL-----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             + +  +       A  LA G      +        +  + +           +     
Sbjct: 314 VFVEIFDEESKKCANAKWLAQGTIYPDVIESAGSATGKAHVIKSHHN-------VGGLPA 366

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR +  E+GL 
Sbjct: 367 DMKMGLVEPLRELFKDEVRKIGLELGLP 394


>gi|328954894|ref|YP_004372227.1| GMP synthase (glutamine-hydrolyzing) [Coriobacterium glomerans PW2]
 gi|328455218|gb|AEB06412.1| GMP synthase (glutamine-hydrolyzing) [Coriobacterium glomerans PW2]
          Length = 526

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 36/205 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RV++A+SGGVDSSVVAAL  R  G  +  V +          RK      +
Sbjct: 209 EIRERVGDARVILALSGGVDSSVVAALCARAIGPRLTCVFI-----NHGLLRKNEPEQVE 263

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           +++         +V       EER+      V+ P       G              + +
Sbjct: 264 EIF-----SSQFDVDFVHVHAEERYAALLAGVVDPEEKRRIIGTQF-----------WEE 307

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS--YFLFATTQQQL 185
             +V ++  G   LA G      +  G          R   ++   +   F    +    
Sbjct: 308 FFAVAQRTGGVRFLAQGTIYPDIIESGARKTGG----RAATIKSHHNLIPFPEGVSFD-- 361

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL    K+ VR+L  ++GL 
Sbjct: 362 --LIEPLDHFFKDEVRELGLQLGLP 384


>gi|307691637|ref|ZP_07633874.1| putative GMP synthase (glutamine-hydrolyzing) [Ruminococcaceae
           bacterium D16]
          Length = 429

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +  V +  +   +  + +      +D  DA  
Sbjct: 134 DKKVLLALSGGVDSSVVAALLIKAIGKQLTCVHV-NHGLLRKGEPEQVVKVFRDEMDANL 192

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V           D  +RF + +                 +     ++        R+L G
Sbjct: 193 V---------YVDAVDRFLDKLAGVSDPEQKRK------IIGGEFIRV--FEEEARKLEG 235

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        + + G +     +           +    +    +L  PL  + K
Sbjct: 236 ISFLGQG---TIYPDIIESGTKTVKAVKSHHN-------VGGLPEDLNFELVEPLKMLFK 285

Query: 198 ESVRDLAREMGLD 210
           + VR   + +GL 
Sbjct: 286 DEVRACGKALGLP 298


>gi|220921297|ref|YP_002496598.1| GMP synthase [Methylobacterium nodulans ORS 2060]
 gi|219945903|gb|ACL56295.1| GMP synthase, large subunit [Methylobacterium nodulans ORS 2060]
          Length = 518

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 74/231 (32%), Gaps = 50/231 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V              G    G+     R   
Sbjct: 222 KVLCGLSGGVDSAVAAVLIHEAIGEQLTCVF----------VDHGLLRLGEAEEVVRLFR 271

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
           D  N+       ++ F  A   V  P       G                   +  +++ 
Sbjct: 272 DHYNIPLVHVQAQDLFLGALAGVTDPEVKRKTIGRLF-----------IDVFEAEAKKIG 320

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G      +          +  +           +    ++    L  PL ++ 
Sbjct: 321 GAAFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELF 373

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           K+ VR L RE+GL  A         FV +  +         G+A+   G+I
Sbjct: 374 KDEVRVLGRELGLPDA---------FVGRHPF------PGPGLAIRCPGEI 409


>gi|331270376|ref|YP_004396868.1| GMP synthase, large subunit [Clostridium botulinum BKT015925]
 gi|329126926|gb|AEB76871.1| GMP synthase, large subunit [Clostridium botulinum BKT015925]
          Length = 517

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V     +     K +G             
Sbjct: 222 DKKVLCALSGGVDSSVAAVLVHKAIGKQLTCVF---VDHGLLRKDEGDQVEAIFK----- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    +  ERF   +                 +     ++         +LG 
Sbjct: 274 --KQFDMNLIRVNAAERFLGKLKGVSDPETKRK------IIGEEFIRV--FEEEAGKLGQ 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G       +           +    +     L  PL ++ K
Sbjct: 324 IDFLVQG---TIYPDVVESGTNTSATIKSHHN-------VGGLPEDMQFSLIEPLRELFK 373

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 374 DEVRAVGEELGIP 386


>gi|261838378|gb|ACX98144.1| guanosine-5'-monophosphate synthase [Helicobacter pylori 51]
          Length = 508

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANDKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+G+ 
Sbjct: 358 PLRELFKDEVRLLGKELGIS 377


>gi|229107930|ref|ZP_04237560.1| GMP synthase, large subunit [Bacillus cereus Rock1-15]
 gi|228675528|gb|EEL30742.1| GMP synthase, large subunit [Bacillus cereus Rock1-15]
          Length = 515

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|195952861|ref|YP_002121151.1| argininosuccinate synthase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932473|gb|ACG57173.1| Argininosuccinate synthase [Hydrogenobaculum sp. Y04AAS1]
          Length = 402

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV++A SGG+D+S++   L   G++V    +  Y +    K + S    +    AR+  
Sbjct: 3   KRVILAYSGGLDTSIIVRWLTERGFEV----M-TYTADVGQKEELSEIPEK----ARKAG 53

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V   V D  E F     +P   + A  E   P     +R +    L+   ++  AD
Sbjct: 54  A---VEAIVEDIREEFVKDFCLPTLRALALYEGKYPLTASLSRPLISKKLIEYAKKRNAD 110

Query: 140 VLATG 144
            +A G
Sbjct: 111 YIAHG 115


>gi|298675346|ref|YP_003727096.1| argininosuccinate synthase [Methanohalobium evestigatum Z-7303]
 gi|298288334|gb|ADI74300.1| argininosuccinate synthase [Methanohalobium evestigatum Z-7303]
          Length = 395

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           P+  +VV+A SGG+D+SV   LLK + GYD VI            +         +++ +
Sbjct: 2   PEPKKVVLAYSGGLDTSVCIPLLKEEYGYDEVI------------TVAVNVGQPEEEIKE 49

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A    + I+  HY  D  + F N  I P   +    E  +      R +    ++ V  +
Sbjct: 50  ADEKAEKISDKHYTIDARKEFVNDYIFPLIKANGDYEGYVMGTSVARPLIAKKVVEVAEK 109

Query: 136 LGADVLATG 144
             A  L+ G
Sbjct: 110 EKASALSHG 118


>gi|229823793|ref|ZP_04449862.1| hypothetical protein GCWU000282_01095 [Catonella morbi ATCC 51271]
 gi|229786832|gb|EEP22946.1| hypothetical protein GCWU000282_01095 [Catonella morbi ATCC 51271]
          Length = 217

 Score = 56.7 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           V +SGG DSS   AL       V+ V++        ++   +    Q             
Sbjct: 4   VLLSGGADSSTALALALSRDPQVVAVSIAYNQQHAQAELAAAKAVAQHY----------G 53

Query: 85  VSHYVFDYEERFRN-----AVIVPFASS---YAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           V H + D    F +            +S   YA  E P   V+    V  + L S+  QL
Sbjct: 54  VDHRILDLAAIFADSRSALNAANDLVASQGDYADQEAPNTEVEFRNGVFIAILTSLAMQL 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD L  G ++     +  D     +         DQ+  L    + +L     P G M 
Sbjct: 114 GADALYFGAHLDDSGVIYPDCSPDFV------AAMDQAVRLGTGGKVRLE---TPFGQMT 164

Query: 197 KESVRDLAREMGLD 210
           K  +  L  E+G+ 
Sbjct: 165 KADIVKLGLELGVP 178


>gi|188527826|ref|YP_001910513.1| GMP synthase [Helicobacter pylori Shi470]
 gi|226739632|sp|B2UUF1|GUAA_HELPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188144066|gb|ACD48483.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori Shi470]
          Length = 508

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 40/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET                 
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETF-----------IEAFE 301

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF------LFATTQQQ 184
              ++         H+++ ++     G     +   +   +  S        +    +  
Sbjct: 302 KEAKK---------HHLKGKIEFLAQGTLYPDVIESV-SVKGPSKVIKTHHNVGGLPEWM 351

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L +E+G+ 
Sbjct: 352 DFKLIEPLRELFKDEVRLLGKELGIS 377


>gi|170760980|ref|YP_001785678.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407969|gb|ACA56380.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 288

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  RIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    C+ +N+   +F+  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCNYLNIPINLFN-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|34558441|ref|NP_908256.1| argininosuccinate synthase [Wolinella succinogenes DSM 1740]
 gi|44887688|sp|Q7M7P6|ASSY_WOLSU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|34484160|emb|CAE11156.1| ARGININOSUCCINATE SYNTHASE CITRULLINE--ASPARTATELIGASE [Wolinella
           succinogenes]
          Length = 404

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 28/138 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  ++V+A SGG+D+SV+   L+   Y    VT                  G++V  A
Sbjct: 2   SKKINKIVLAYSGGLDTSVILKWLQEQ-YQCEVVTF-----------TADIGQGEEVEPA 49

Query: 77  RRVCDTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKF 126
           R     + +      + D +E F    + P           Y  G          R +  
Sbjct: 50  RAKAKLLGIKEENIFIKDLKEEFVRDYVFPMFRANTLYEGEYLLG------TSIARPLIA 103

Query: 127 SDLLSVTRQLGADVLATG 144
             L+ + +++GAD ++ G
Sbjct: 104 KHLVEIAKEVGADAISHG 121


>gi|160939548|ref|ZP_02086897.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437499|gb|EDP15262.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 433

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +  V          +         + V D  +
Sbjct: 138 DRKVLLALSGGVDSSVVAALLIKAIGKQLTCVH--------VNHGLMRKGESESVIDVFK 189

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + ++ +    D  +RF   +                 +     ++        R+L G
Sbjct: 190 --NQMDANLVYVDAVDRFLGKLAGVADPEQKRK------IIGAEFIRV--FEEEARKLEG 239

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMK 196
            + LA G        + + G +   + +           +     + L      PL  + 
Sbjct: 240 IEFLAQG---TIYPDIVESGTKTAKVVKSHHN-------VGGLP-EDLNFTLVEPLRQLF 288

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+GL 
Sbjct: 289 KDEVRACGLELGLP 302


>gi|30018516|ref|NP_830147.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus ATCC 14579]
 gi|229125762|ref|ZP_04254790.1| GMP synthase, large subunit [Bacillus cereus BDRD-Cer4]
 gi|44887947|sp|Q81IS3|GUAA_BACCR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29894056|gb|AAP07348.1| GMP synthase, glutamine-hydrolyzing [Bacillus cereus ATCC 14579]
 gi|228657702|gb|EEL13512.1| GMP synthase, large subunit [Bacillus cereus BDRD-Cer4]
          Length = 515

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDARDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|326930372|ref|XP_003211321.1| PREDICTED: argininosuccinate synthase-like [Meleagris gallopavo]
          Length = 382

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 50/136 (36%), Gaps = 30/136 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D  VV+A SGG+D+S +   LK  GY VI   L                  +D   AR
Sbjct: 4   PRDT-VVLAYSGGLDTSCILVWLKEQGYTVIA-FLANI------------GQKEDFDAAR 49

Query: 78  RVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSD 128
           +    +     Y+ D    F    I P   + A  E           PC+          
Sbjct: 50  KKALALGAEKVYIQDVCREFVEEFIWPAVQANALYEDRYLLGTALARPCIA-------RR 102

Query: 129 LLSVTRQLGADVLATG 144
           L+ V ++ GA  +A G
Sbjct: 103 LVLVAKEQGARYIAHG 118


>gi|169629428|ref|YP_001703077.1| argininosuccinate synthase [Mycobacterium abscessus ATCC 19977]
 gi|169241395|emb|CAM62423.1| Argininosuccinate synthase ArgG [Mycobacterium abscessus]
          Length = 404

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 8   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDL------------GQGGEDMEVVRQRA 55

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   S A      P V   +R +    L++  R+ G 
Sbjct: 56  LDCGAVEAVVVDARDEFAEEYCLPTIQSNALYMDRYPLVSAISRPLIVKHLVAAAREHGG 115

Query: 139 DVLATG 144
            ++A G
Sbjct: 116 GIVAHG 121


>gi|302875784|ref|YP_003844417.1| GMP synthase, large subunit [Clostridium cellulovorans 743B]
 gi|307689219|ref|ZP_07631665.1| GMP synthase [Clostridium cellulovorans 743B]
 gi|302578641|gb|ADL52653.1| GMP synthase, large subunit [Clostridium cellulovorans 743B]
          Length = 510

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G ++  V     +     K +G             
Sbjct: 215 DKKVLCALSGGVDSSVAAVLVHKAIGKNLTCVF---VDHGLLRKDEGDQVEQIFRG---- 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                +++    + +ERF             AG +     +  R +              
Sbjct: 268 ---QFDMNLIRVNAQERFLGK---------LAGVS---DPEAKRKIIGEEFIRVFEEEAN 312

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +LG  D L  G        + + G       +           +    +    +L  PL 
Sbjct: 313 KLGEIDFLVQG---TIYPDIVESGTATSATIKSHHN-------VGGLPEDMEFELIEPLR 362

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+G+ 
Sbjct: 363 ELFKDEVRAVGEEVGIP 379


>gi|269797249|ref|YP_003311149.1| GMP synthase, large subunit [Veillonella parvula DSM 2008]
 gi|269093878|gb|ACZ23869.1| GMP synthase, large subunit [Veillonella parvula DSM 2008]
          Length = 511

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 32/212 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            ++   +    D+     D +V++A+SGGVDSSV AAL+ +  G  +  +     +    
Sbjct: 198 TMANYAKTAIEDIRNTVGDGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLM 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G         +         +     D E+RF            A  E P      
Sbjct: 255 RKNEGD--------EVEAAFKDSGMHFIRVDAEKRF--------LDKLAGLEDPEAKRKA 298

Query: 121 NRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
                        R++G  D LA G        V + G     + +           +  
Sbjct: 299 IGEEFIRVFEDEGRKIGSVDFLAQG---TIYPDVIESGTGEAEIIKSHHN-------VGG 348

Query: 180 TTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                    L  PL ++ K+ VR+L  E+GL 
Sbjct: 349 LPAVVDFKGLIEPLRNLFKDEVRELGSELGLA 380


>gi|90022068|ref|YP_527895.1| argininosuccinate synthase [Saccharophagus degradans 2-40]
 gi|119361319|sp|Q21HZ6|ASSY_SACD2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|89951668|gb|ABD81683.1| argininosuccinate synthase [Saccharophagus degradans 2-40]
          Length = 409

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 26/139 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N    +VV+A SGG+D+SV+   L+   Y+   VT                  G++V
Sbjct: 1   MSTNSSIKKVVLAYSGGLDTSVIVKWLQET-YNCEVVTF-----------TADIGQGEEV 48

Query: 74  YDARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVK 125
             AR   + + V   Y+ D  E F    + P           Y  G +    +   R   
Sbjct: 49  EPARAKAEALGVKEIYIDDLREEFVRDYVFPMFRANTIYEGEYLLGTSIARPLIAKR--- 105

Query: 126 FSDLLSVTRQLGADVLATG 144
              L+ +  + GAD ++ G
Sbjct: 106 ---LIEIANETGADAISHG 121


>gi|229824268|ref|ZP_04450337.1| hypothetical protein GCWU000282_01572 [Catonella morbi ATCC 51271]
 gi|229786241|gb|EEP22355.1| hypothetical protein GCWU000282_01572 [Catonella morbi ATCC 51271]
          Length = 516

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG      D      
Sbjct: 221 DRKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGEGDQVMD-----S 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     ++    + ++RF + +                 V       F D     +  G 
Sbjct: 271 LAGKFGLNIIRVNAKDRFLSKLAGVSDPEQKRKIIGNEFVYV-----FDD--EAAKLEGV 323

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G        + + G +     +           +    +    +L  PL  + K+
Sbjct: 324 DFLAQG---TLYTDIIESGTKTAETIKSHHN-------VGGLPEDMQFELIEPLNTLFKD 373

Query: 199 SVRDLAREMGLD 210
            VR L   +G+ 
Sbjct: 374 EVRALGTALGMP 385


>gi|228919192|ref|ZP_04082565.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840470|gb|EEM85738.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 515

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|325294272|ref|YP_004280786.1| GMP synthase (glutamine-hydrolyzing) [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064720|gb|ADY72727.1| GMP synthase (glutamine-hydrolyzing) [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 517

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V+ A+SGGVDSSVVAALL +     IG   QLY     +               R  
Sbjct: 219 DKNVICALSGGVDSSVVAALLHKA----IGD--QLYPIFVDTGLLRKGERESVEKTFR-- 270

Query: 80  CDTINVS-HYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +   +      D    F      V  P       G T +                  ++
Sbjct: 271 -EKFQMKNFRTVDASSLFLERLKGVTDPEKKRKIIGHTFIEV-----------FEKAAKE 318

Query: 136 L-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  A  LA        I S    G     +                +    ++    L  
Sbjct: 319 IPNAHFLAQGTLYPDVIESVSVKGPSATIKSHHN------------VGGLPERLNFKLIE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L +E+GL 
Sbjct: 367 PLRELFKDEVRELGKELGLP 386


>gi|229148655|ref|ZP_04276908.1| GMP synthase, large subunit [Bacillus cereus m1550]
 gi|229176849|ref|ZP_04304248.1| GMP synthase, large subunit [Bacillus cereus 172560W]
 gi|228606631|gb|EEK64053.1| GMP synthase, large subunit [Bacillus cereus 172560W]
 gi|228634816|gb|EEK91392.1| GMP synthase, large subunit [Bacillus cereus m1550]
          Length = 515

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|67920157|ref|ZP_00513677.1| ExsB [Crocosphaera watsonii WH 8501]
 gi|67857641|gb|EAM52880.1| ExsB [Crocosphaera watsonii WH 8501]
          Length = 230

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+  AA+    GY+VI ++L            G     +++  A+ + + +
Sbjct: 8  VVLLSGGLDSATSAAIAIDQGYEVIALSL----------EYGQ-RHQRELEAAKTIAEAL 56

Query: 84 NV-SHYVFD 91
          N+  HY+ D
Sbjct: 57 NITQHYIID 65


>gi|317488477|ref|ZP_07947028.1| hypothetical protein HMPREF1023_00726 [Eggerthella sp. 1_3_56FAA]
 gi|316912409|gb|EFV33967.1| hypothetical protein HMPREF1023_00726 [Eggerthella sp. 1_3_56FAA]
          Length = 210

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 52/199 (26%)

Query: 22  RVVVAMSGGVDSS---VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+ VA SGG DSS   V A    R G DV           KA   + +     ++ DA+R
Sbjct: 24  RLAVAFSGGCDSSFLLVAAL---RAGCDV-----------KAYGVRTAFQPAFEIDDAKR 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   +     + D +   +  +             P  C  C   + FS +L+   + G 
Sbjct: 70  LAAELGADFELVDADVLAQGEIC---------ANGPDRCYRCKTFI-FSTILARMAEDGF 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
           +VLA G        V DD   R       +L                  +  PL    M 
Sbjct: 120 EVLADG------TNVTDDPANRPGFRALAELG-----------------VVSPLRRAGMA 156

Query: 197 KESVRDLAREMGLDIADKS 215
           K+ VR  +RE+GL  ADK 
Sbjct: 157 KDDVRAASRELGLFTADKP 175


>gi|150398931|ref|YP_001322698.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150011634|gb|ABR54086.1| PP-loop domain protein [Methanococcus vannielii SB]
          Length = 323

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 84/216 (38%), Gaps = 29/216 (13%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +PKD +VVV +SGG DS  +  LL    ++ G ++  +T+ L         +      ++
Sbjct: 73  SPKD-KVVVGLSGGKDSLALLHLLEPYKRKYGVEIHAITVDL----NIDGIRPWNETNKN 127

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCN---RTVKFS 127
           V    + C+ +N+ H +      +   V+      S  + G    PC  C+   R +   
Sbjct: 128 VKMISKTCENLNIPHKII----PYDENVVEMSKILSKNSKGIDYSPCFSCSISRRHI--- 180

Query: 128 DLLSVTRQ---LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER--DQSYFLFATTQ 182
            L +  ++        +A GH +            +  + + ++  +  D++   F   +
Sbjct: 181 -LTNYAKETFNCENVKIALGHTLEDNSDTIIANILKGNIIKALEPIKNFDETKIDFDGLK 239

Query: 183 QQLCDLRF--PLGDMKKESVRDLAREMGLDIADKSD 216
             L +     PL ++ +E ++    E  ++     D
Sbjct: 240 VSLKNCCMIRPLLNISEEKIKKALNECNIEYYKDKD 275


>gi|329957023|ref|ZP_08297591.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
 gi|328523780|gb|EGF50872.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
          Length = 517

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L     + RV++ +SGGVDSSV A LL R  G ++  +                     
Sbjct: 206 ELKGQLGNDRVILGLSGGVDSSVAAVLLHRAIGKNLTCIF-----------VDHGLLRKN 254

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +  +  R  + + ++    D   +F              G T  P  +  R +   D + 
Sbjct: 255 EFRNVMRDYECLGLNVIGVDASAKFFKD---------LEGVT-EP--EQKRKIIGRDFIE 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V     A  +    ++       D  +   I  + +    +    +    ++    L  P
Sbjct: 303 VFDA-EAHKITDARWLAQGTIYPDRIESLNITGKTIKSHHN----VGGLPEEMNLRLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LQWLFKDEVRRVGRELGMP 376


>gi|228956693|ref|ZP_04118482.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042155|ref|ZP_04189912.1| GMP synthase, large subunit [Bacillus cereus AH676]
 gi|229143053|ref|ZP_04271489.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST24]
 gi|228640418|gb|EEK96812.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST24]
 gi|228727190|gb|EEL78390.1| GMP synthase, large subunit [Bacillus cereus AH676]
 gi|228802994|gb|EEM49823.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 515

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDARDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|229188527|ref|ZP_04315569.1| GMP synthase, large subunit [Bacillus cereus ATCC 10876]
 gi|228594955|gb|EEK52732.1| GMP synthase, large subunit [Bacillus cereus ATCC 10876]
          Length = 515

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|227505061|ref|ZP_03935110.1| argininosuccinate synthase [Corynebacterium striatum ATCC 6940]
 gi|227198349|gb|EEI78397.1| argininosuccinate synthase [Corynebacterium striatum ATCC 6940]
          Length = 404

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G DV+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLSKMTGGDVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLITKHLVKAAQEHG- 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
                 H        G+D  R  +  R +D   +               +  P  D    
Sbjct: 111 ----GTHVSHGCTGKGNDQVRFEVSFRALDPSLE---------------IIAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I   + S
Sbjct: 152 RDKAIAFAEEINLPIEQSASS 172


>gi|218231195|ref|YP_002365095.1| GMP synthase [Bacillus cereus B4264]
 gi|226738385|sp|B7H4Q8|GUAA_BACC4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218159152|gb|ACK59144.1| GMP synthase [Bacillus cereus B4264]
          Length = 512

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|150402404|ref|YP_001329698.1| PP-loop domain-containing protein [Methanococcus maripaludis C7]
 gi|150033434|gb|ABR65547.1| PP-loop domain protein [Methanococcus maripaludis C7]
          Length = 296

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 24/141 (17%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTL-QLYNSRKASKRKGS 66
           LN+ + + N KD ++VV +SGG DS+V  A+ K  G +V   V     ++   ++     
Sbjct: 28  LNNFE-ELNLKDEKIVVMLSGGKDSAVALAIAKDLGLNVHLCVHFVHKWSWDISTNE--- 83

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                    A+++ D  NV     D  E          A      +    C  C   +K 
Sbjct: 84  ---------AKKLADRFNVPIIFPDITEE--------LAKKTQGAKGKSICRICKTIMK- 125

Query: 127 SDLLSVTRQLGADVLATGHYI 147
           + ++ + ++  A ++ TG   
Sbjct: 126 ARMIDIAKEENAKIIMTGETA 146


>gi|58332120|ref|NP_001011212.1| argininosuccinate synthase [Xenopus (Silurana) tropicalis]
 gi|82195682|sp|Q5M8Z6|ASSY_XENTR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56556265|gb|AAH87767.1| arginosuccinate synthetase [Xenopus (Silurana) tropicalis]
          Length = 412

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K M VV+A SGG+D+S +   LK  GYDVI   L                  +D   AR+
Sbjct: 5   KGM-VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANI------------GQNEDFEAARK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDL 129
               +     Y+ D  ++F    I P           Y  G +   PC+   +       
Sbjct: 51  KAVNLGAKKVYIEDMRQQFVEEYIWPAVQANAIYEDRYLLGTSLARPCIAKKQ------- 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++  A+ ++ G
Sbjct: 104 VEIAKKEAAEYVSHG 118


>gi|322804614|emb|CBZ02166.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 288

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    C+ +N+   +F+  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCNYLNIPINLFN-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|310829791|ref|YP_003962148.1| GMP synthase [Eubacterium limosum KIST612]
 gi|308741525|gb|ADO39185.1| GMP synthase [Eubacterium limosum KIST612]
          Length = 435

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V +  +   +  + +      ++  DA  
Sbjct: 140 DRKVLLALSGGVDSSVVAALLIKAIGKQLVCVHV-NHGLMRKGESESVVEVFKNQLDANL 198

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V           D  ERF   +                 +     ++        R+L G
Sbjct: 199 V---------YVDATERFLTKLAGVADPEEKRK------IIGAEFIRV--FEEEARKLEG 241

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        + + G +   M +           +    +    +L  P+  + K
Sbjct: 242 IDFLGQG---TIYPDIVESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPVRQLFK 291

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 292 DEVRACGTELGLP 304


>gi|168177683|ref|ZP_02612347.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
 gi|182670918|gb|EDT82892.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
          Length = 288

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    C+ +N+   +F+  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLIDNCNYLNIPINLFN-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|165976006|ref|YP_001651599.1| GMP synthase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251542|ref|ZP_07337716.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303252222|ref|ZP_07338390.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307245453|ref|ZP_07527541.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247566|ref|ZP_07529610.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307251352|ref|ZP_07533268.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252146|ref|ZP_07534045.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254407|ref|ZP_07536245.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256617|ref|ZP_07538397.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258866|ref|ZP_07540598.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261049|ref|ZP_07542731.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|226738373|sp|B0BUF0|GUAA_ACTPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|165876107|gb|ABY69155.1| GMP synthase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|302649005|gb|EFL79193.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302649540|gb|EFL79722.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306853794|gb|EFM86011.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855931|gb|EFM88090.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856593|gb|EFM88733.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860446|gb|EFM92460.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862706|gb|EFM94662.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864865|gb|EFM96768.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867217|gb|EFM99073.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869351|gb|EFN01146.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 523

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|160944932|ref|ZP_02092159.1| hypothetical protein FAEPRAM212_02448 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444116|gb|EDP21120.1| hypothetical protein FAEPRAM212_02448 [Faecalibacterium prausnitzii
           M21/2]
          Length = 266

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 34/136 (25%)

Query: 22  RVVVAMSGGVDSSVVA-----ALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           RV+V +SGG DS V        L K  G  Y+V+ VTL                      
Sbjct: 29  RVMVGVSGGKDS-VALTIGLSMLRKYIGFDYEVVAVTL-------------DPQFDHQPM 74

Query: 75  DARRVCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D   + +      + + V       R   I P    Y   +   PC  C   ++   L +
Sbjct: 75  DYSALAELFRQHGIPYEV-------RRTEIGPVVFEYRKEK--NPCALC-AKLRRGALHT 124

Query: 132 VTRQLGADVLATGHYI 147
             ++LG + +A GH++
Sbjct: 125 AAQELGCNKVALGHHL 140


>gi|153931917|ref|YP_001382743.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935004|ref|YP_001386294.1| PP-loop family protein [Clostridium botulinum A str. Hall]
 gi|152927961|gb|ABS33461.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930918|gb|ABS36417.1| PP-loop family protein [Clostridium botulinum A str. Hall]
          Length = 288

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 37/137 (27%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS ++A L   LK+ G   +++  +++                      D
Sbjct: 55  KIAVAVSGGKDSILMAKLFQELKKHGQINFEIEFISM----------------DPGYHED 98

Query: 76  ARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            R++    C+ +N+   +F+  + F+  VI   A  Y       PC  C   ++   L S
Sbjct: 99  IRKLLVDNCNYLNIPINLFN-SDIFK--VIDDIAKDY-------PCYMC-ARMRRGALYS 147

Query: 132 VTRQLGADVLATGHYIR 148
             ++LG + LA GH+  
Sbjct: 148 KAQELGCNKLALGHHFN 164


>gi|126208074|ref|YP_001053299.1| GMP synthase [Actinobacillus pleuropneumoniae L20]
 gi|226738371|sp|A3MZV8|GUAA_ACTP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126096866|gb|ABN73694.1| GMP synthase (glutamine-hydrolyzing) [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 523

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|254974416|ref|ZP_05270888.1| NH3-dependent NAD(+) synthetase [Clostridium difficile QCD-66c26]
 gi|255091807|ref|ZP_05321285.1| NH3-dependent NAD(+) synthetase [Clostridium difficile CIP 107932]
 gi|255313542|ref|ZP_05355125.1| NH3-dependent NAD(+) synthetase [Clostridium difficile QCD-76w55]
 gi|255516227|ref|ZP_05383903.1| NH3-dependent NAD(+) synthetase [Clostridium difficile QCD-97b34]
 gi|255649324|ref|ZP_05396226.1| NH3-dependent NAD(+) synthetase [Clostridium difficile QCD-37x79]
 gi|260682494|ref|YP_003213779.1| NH3-dependent NAD(+) synthetase [Clostridium difficile CD196]
 gi|260686093|ref|YP_003217226.1| NH3-dependent NAD(+) synthetase [Clostridium difficile R20291]
 gi|306519419|ref|ZP_07405766.1| NAD+ synthetase [Clostridium difficile QCD-32g58]
 gi|260208657|emb|CBA61420.1| NH3-dependent NAD(+) synthetase [Clostridium difficile CD196]
 gi|260212109|emb|CBE02727.1| NH3-dependent NAD(+) synthetase [Clostridium difficile R20291]
          Length = 251

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 41/192 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVA L+K+            +               QD  DA +V +  
Sbjct: 28  IVGVSGGIDSAVVANLIKKA-----------FPENSMGVIMSIKSNPQDREDALKVIEGC 76

Query: 84  NVSHYVFDYEERFR---NAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           ++ +   D  E      + V+        Y A    +   +    V+ S + ++   LG 
Sbjct: 77  DIEYLDLDLIEPQSAILDMVVGNLKDKHLYRAEYLKMTDANLRARVRMSTIYTIANNLGY 136

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V+ T +                   +  D   D                  P+ ++ K 
Sbjct: 137 LVVGTDNAAEIHTG---------YFTKFGDGGVD----------------ILPIANLTKG 171

Query: 199 SVRDLAREMGLD 210
            V + A+E+G+ 
Sbjct: 172 EVYEWAKELGVH 183


>gi|320449292|ref|YP_004201388.1| NAD+ synthetase [Thermus scotoductus SA-01]
 gi|320149461|gb|ADW20839.1| NAD+ synthetase [Thermus scotoductus SA-01]
          Length = 281

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 65/193 (33%), Gaps = 44/193 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VA+SGGVDS+   AL  R  G   V  + L     R +S              A  V
Sbjct: 39  KAIVAVSGGVDSATTLALAVRALGRKQVHALFL---PHRDSS--------PLSREHAYLV 87

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +T  V     D         I P    YAA     P +  +R     +L++  R +   
Sbjct: 88  AETFGVDLEEVD---------ITPMVEGYAA---MTPDLTPHRK---GNLMARARMM--- 129

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +        +      G +   +           YF +            PLGD+ K  
Sbjct: 130 -VLFDKSQAYQALPLGTGNKTERLFG---------YFTWHGDDTPP---VNPLGDLYKTQ 176

Query: 200 VRDLAREMGLDIA 212
           V  LAR +G+  A
Sbjct: 177 VWGLARHLGVPQA 189


>gi|319403509|emb|CBI77088.1| Argininosuccinate synthase [Bartonella rochalimae ATCC BAA-1498]
          Length = 407

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K  +  +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MKKWKEIKKVVLAYSGGLDTSIILKWLQSELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  ARR  + + V   Y+ D  E F    + P   + A  E          R +    L+
Sbjct: 48  LELARRKAEMLGVKEIYIEDLREEFVRDFVFPMFRANAVYEGAYLLGTSIARPLISKRLV 107

Query: 131 SVTRQLGADVLATG 144
            + ++  AD +A G
Sbjct: 108 EIAQKTNADAIAHG 121


>gi|307263231|ref|ZP_07544851.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871448|gb|EFN03172.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 523

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|290475585|ref|YP_003468473.1| GMP synthetase (glutamine aminotransferase) [Xenorhabdus bovienii
           SS-2004]
 gi|289174906|emb|CBJ81707.1| GMP synthetase (glutamine aminotransferase) [Xenorhabdus bovienii
           SS-2004]
          Length = 525

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 70/214 (32%), Gaps = 69/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYN-------- 56
           D  V++A+SGGVDSSV A LL R  G  +  V               + ++         
Sbjct: 227 DDHVILALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRLNEADQVMAMFEGKFDLNLV 286

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             KA +R  S  AG D  +A+R   TI    +V  + + F           + A  T  P
Sbjct: 287 HVKAEERFLSALAGIDEPEAKR--KTIG---HV--FIDVFDEEASKQTQVKWLAQGTIYP 339

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V                +  A      H I+S   VG                      
Sbjct: 340 DVI---------------ESAASATGNAHVIKSHHNVG---------------------- 362

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                      L  PL ++ K+ VR +  E+GL 
Sbjct: 363 --GLPDDMKLGLVEPLKELFKDEVRRIGLELGLP 394


>gi|224541534|ref|ZP_03682073.1| hypothetical protein CATMIT_00704 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525571|gb|EEF94676.1| hypothetical protein CATMIT_00704 [Catenibacterium mitsuokai DSM
           15897]
          Length = 514

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 42/201 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         D   
Sbjct: 215 DGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVEAVFGKDG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
              + +++    + +ER+ +            G T  P  +  R +             +
Sbjct: 270 ---SYDLNFIRVNAQERYYSK---------LKGVT-EP--ESKRKIIGEEFIRVFEEEAK 314

Query: 135 QLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ++GA D L  G      +  G  G+    +       +    D              ++ 
Sbjct: 315 KIGAVDFLVQGTIYPDVVESGLGGESAVIKSHHNVGGLPDCVD------------FKEII 362

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR +  E+G+ 
Sbjct: 363 EPLRDLFKDEVRKVGLELGIP 383


>gi|197285404|ref|YP_002151276.1| GMP synthase [Proteus mirabilis HI4320]
 gi|226739664|sp|B4EY59|GUAA_PROMH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194682891|emb|CAR43237.1| GMP synthase [glutamine-hydrolyzing] [Proteus mirabilis HI4320]
          Length = 525

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++A+SGGVDSSV A LL R  G  +  V +     R     +        
Sbjct: 221 LKQQIGDDHVILALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRLNEAEQVMAMFKGK 280

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
                     +N+ H   + E+RF  A           GE      +  R +        
Sbjct: 281 FD--------LNIIH--VEAEDRFLTA---------LKGEN---DPEKKRKIIGHTFIEI 318

Query: 129 LLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +L     LA G      +        +  + +           +    +     
Sbjct: 319 FDEEAVKLPQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPEDMKLG 371

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR +  E+GL 
Sbjct: 372 LVEPLKELFKDEVRKIGLELGLP 394


>gi|111017964|ref|YP_700936.1| argininosuccinate synthase [Rhodococcus jostii RHA1]
 gi|226360095|ref|YP_002777873.1| argininosuccinate synthase [Rhodococcus opacus B4]
 gi|119361316|sp|Q0SI58|ASSY_RHOSR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807529|sp|C1ASZ6|ASSY_RHOOB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|110817494|gb|ABG92778.1| argininosuccinate synthase [Rhodococcus jostii RHA1]
 gi|226238580|dbj|BAH48928.1| argininosuccinate synthase [Rhodococcus opacus B4]
          Length = 399

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGKEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F +   +P   + A      P V   +R +    L+   R  G 
Sbjct: 52  LDCGAVESVVVDARDEFADEYCLPTIQANALYMDRYPLVSAISRPLIVKHLVEAARAHGG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TTVAHG 117


>gi|292656744|ref|YP_003536641.1| GMP synthase (glutamine-hydrolyzing) subunit B [Haloferax volcanii
           DS2]
 gi|291371351|gb|ADE03578.1| GMP synthase (glutamine-hydrolyzing) subunit B [Haloferax volcanii
           DS2]
          Length = 305

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 112/334 (33%), Gaps = 58/334 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D   ++A+SGGVDSSV A L     Y+ +G  L          RKG            ++
Sbjct: 21  DEHAIIALSGGVDSSVAATLA----YEAVGEQLTPVYVDTGLMRKGET---------EQI 67

Query: 80  CDTINV--SHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            DT +   S  V D  +RF +A   V+ P       GE               +     +
Sbjct: 68  ADTFSFMESLRVVDARDRFFDALEGVVDPEEKRKVIGEQF-----------IREFEREAK 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +  A  L  G     R+    + K    +    D+                  +  P+ D
Sbjct: 117 ETDAQYLVQGTIYPDRIESEGNIKSHHNVGGLPDVV-------------DFEGIVEPVRD 163

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQIL 253
           + K+ VR++AR +GL   +   ++ + F   G    V+  +         D  H+     
Sbjct: 164 LYKDEVREVARALGL---ESIIAERMPFPGPGLAVRVLGEVTPEKVQVARDACHVVEDET 220

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI-VGPRESLEVHRIYLREINWLG 312
            +H+    +     +G G        V   ++    ++ V   ES +      +E+ W  
Sbjct: 221 EKHDPWQAFAAVIGKGTG--------VKGDNRVHGWIVSVRSVESRDGMTARAQELPWDT 272

Query: 313 DGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRN 344
               +  +    +   ++    +  P P  ++  
Sbjct: 273 LQRIQSRITGTNENVARVVYDVTHKP-PATIEYE 305


>gi|256827441|ref|YP_003151400.1| GMP synthase (glutamine-hydrolyzing) [Cryptobacterium curtum DSM
           15641]
 gi|256583584|gb|ACU94718.1| GMP synthase (glutamine-hydrolyzing) [Cryptobacterium curtum DSM
           15641]
          Length = 530

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+++A+SGGVDSSVVAAL  +  G  +  V            RKG     ++V+      
Sbjct: 222 RMILALSGGVDSSVVAALCAKAVGKQLTCVF-----VNHGLLRKGEPEQVEEVF-----T 271

Query: 81  DTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
              ++       EER+      V+ P       G              + +  +V ++  
Sbjct: 272 KQFDIDFVHVHAEERYAKLLAGVVDPEQKRRIIGTQF-----------WKEFFAVAQETG 320

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   LA G      +  G          +   ++   +   F   +    DL  PL    
Sbjct: 321 GIKYLAQGTIYPDIIESGARKTGG----KASTIKSHHNLIPF--PEGVRFDLIEPLDHFF 374

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 375 KDEVRALGEALGLP 388


>gi|170739288|ref|YP_001767943.1| GMP synthase [Methylobacterium sp. 4-46]
 gi|168193562|gb|ACA15509.1| GMP synthase, large subunit [Methylobacterium sp. 4-46]
          Length = 518

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 73/230 (31%), Gaps = 48/230 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V              G    G+     R   
Sbjct: 222 KVLCGLSGGVDSAVAAVLIHEAIGEQLTCVF----------VDHGLLRLGEAEEVVRLFR 271

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           D  N+       ++ F  A   V  P       G   +   +              +  G
Sbjct: 272 DHYNIPLVHVQAQDLFLGALAGVTDPEVKRKTIGRLFIDVFEA----------EARKSGG 321

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +          +  +           +    ++    L  PL ++ K
Sbjct: 322 AAFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLRELFK 374

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDI 245
           + VR L RE+GL  A         FV +  +         G+A+   G+I
Sbjct: 375 DEVRVLGRELGLPDA---------FVGRHPF------PGPGLAIRCPGEI 409


>gi|119511902|ref|ZP_01631001.1| hypothetical protein N9414_02154 [Nodularia spumigena CCY9414]
 gi|119463470|gb|EAW44408.1| hypothetical protein N9414_02154 [Nodularia spumigena CCY9414]
          Length = 275

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 64/194 (32%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGG+DS++VA +     YDV+G      +   A          +++ DA+    T+
Sbjct: 20  LIAYSGGIDSTLVAKIA----YDVLG------DRALAVTAVSPSLLPEELEDAKIQAATM 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H +    E                      C  C   +    L  +  QLG   +  
Sbjct: 70  GIPHKIVQTHEMDNPNYTSNPV---------NRCYFCKSEL-HDTLKPLALQLGYPYVVD 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KKESVR 201
           G          DD    R                      Q    R PL ++   K  VR
Sbjct: 120 G-------VNADDLHDYRP----------------GIQAAQERGARSPLAEIGVTKAQVR 156

Query: 202 DLAREMGLDIADKS 215
            L++++GL   DK 
Sbjct: 157 QLSQQLGLPWWDKP 170


>gi|58040378|ref|YP_192342.1| GMP synthase [Gluconobacter oxydans 621H]
 gi|81351534|sp|Q5FPL0|GUAA_GLUOX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58002792|gb|AAW61686.1| GMP synthase [glutamine-hydrolyzing] [Gluconobacter oxydans 621H]
          Length = 533

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 63/212 (29%), Gaps = 41/212 (19%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKAS 61
            L    + K     RV+  +SGGVDSSV A L+    G  +  +      ++   + +  
Sbjct: 223 ELEIARIRKQVGSGRVICGLSGGVDSSVAAKLIHDAIGDQLTCIFVDPGIMRTGEADEVV 282

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV 118
           K                     N+     D  E F      V  P       G   +   
Sbjct: 283 KTFRG---------------RFNIRLVHRDASELFLKELAGVTDPETKRKTIGRLFIEVF 327

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           +              +  GA  LA G      +          +  +           + 
Sbjct: 328 EE----------EAAKLGGAQFLAQGTLYPDVIESVSFSGGPSVTIKSHHN-------VG 370

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +   +L  PL ++ K+ VR L RE+G+ 
Sbjct: 371 GLPDRMNMELVEPLRELFKDEVRMLGRELGIP 402


>gi|28897391|ref|NP_796996.1| GMP synthase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838554|ref|ZP_01991221.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AQ3810]
 gi|153839137|ref|ZP_01991804.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AQ3810]
 gi|260876350|ref|ZP_05888705.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AN-5034]
 gi|260898621|ref|ZP_05907117.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           Peru-466]
 gi|260899279|ref|ZP_05907674.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AQ4037]
 gi|31340118|sp|Q87S07|GUAA_VIBPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28805603|dbj|BAC58880.1| GMP synthase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747349|gb|EDM58323.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AQ3810]
 gi|149748069|gb|EDM58928.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AQ3810]
 gi|308086960|gb|EFO36655.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           Peru-466]
 gi|308093061|gb|EFO42756.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AN-5034]
 gi|308106591|gb|EFO44131.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           AQ4037]
 gi|328472587|gb|EGF43450.1| GMP synthase [Vibrio parahaemolyticus 10329]
          Length = 517

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LEALKGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|319943796|ref|ZP_08018077.1| GMP synthase [Lautropia mirabilis ATCC 51599]
 gi|319743029|gb|EFV95435.1| GMP synthase [Lautropia mirabilis ATCC 51599]
          Length = 538

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGD-----MVMD--MFAG 278

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  + F +A+             G   +          F       +  GA
Sbjct: 279 KLHAKVVRVDASQLFLDALAGVSDPEQKRKIIGRLFVDV--------FKAEAEKLKASGA 330

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
                    +  +Y            + + ++   +  +     +QL   L  PL D+ K
Sbjct: 331 GHKGATFLAQGTIYPDVIESGGAKSKKAVVIKSHHN--VGGLP-EQLGLKLLEPLRDLFK 387

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 388 DEVRELGVALGLP 400


>gi|190149906|ref|YP_001968431.1| GMP synthase (glutamine-hydrolyzing) [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|226738372|sp|B3H120|GUAA_ACTP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|189915037|gb|ACE61289.1| GMP synthase (glutamine-hydrolyzing) [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 523

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|320096273|ref|ZP_08027852.1| argininosuccinate synthase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976794|gb|EFW08558.1| argininosuccinate synthase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 407

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +    RVV+A SGG+D+SV    +    G +V+ V                   G+D+  
Sbjct: 2   STSKDRVVLAYSGGLDTSVAIGWIGEQTGREVVAV------------AVDVGQGGEDLEV 49

Query: 76  ARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
            R+       V  YV D  E F +   +P   +    E   P V   +R V    L+   
Sbjct: 50  IRQRALDCGAVEAYVADAREEFASDYCMPALKANGLYEGRYPLVSALSRPVIVKHLVKAA 109

Query: 134 RQLGADVLATG 144
           R+ GA  +A G
Sbjct: 110 REFGATTVAHG 120


>gi|254167304|ref|ZP_04874156.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469]
 gi|197623567|gb|EDY36130.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469]
          Length = 288

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 26/203 (12%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K   + ++ +A+SGG DS V+        YD+ G  + L          G       +
Sbjct: 36  LKKYKPEGKIAIALSGGKDSMVLLHYFAERDYDIFGYFINL----------GIGEHSDKM 85

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               R  C    V   V +  E +   +          G    PC  C   VK   +  V
Sbjct: 86  EKLVRNACKEYGVELIVTNLREEYGFGI---------EGVRRKPCSVCGT-VKRYLMNKV 135

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            R+ GA ++ATGH +   L    D   +  + +     R+   +L +T  + L  +R PL
Sbjct: 136 PRENGAKLVATGHNMDDFL----DFFFKNTLAKNYQWNRNMVPYLPSTHPKMLPKIR-PL 190

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
             +  + +   A+   +  +   
Sbjct: 191 YLLGDKEIEMYAKLNNVPYSSDK 213


>gi|157869227|ref|XP_001683165.1| GMP synthase; glutamine amidotransferase [Leishmania major strain
           Friedlin]
 gi|68224049|emb|CAJ03818.1| putative GMP synthase [Leishmania major strain Friedlin]
          Length = 656

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 44/218 (20%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++     +V+   SGGVDS+V A LL +  G + V+ +      ++L  S +A +   + 
Sbjct: 217 ERTSGGQKVLCLASGGVDSTVCAVLLLKALGPERVVCIHIDHGFMRLNESVQAVEALNAA 276

Query: 68  CAGQDVYDAR---------------RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
                +  A+               R   T N    V D     +  +I         G 
Sbjct: 277 GVRVHLVKAQEDFAQASTEMTAKGSRAAYTTNKLREVTD--PEEKRNII---------GN 325

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           T +    C+R +K         QL  + L           +    K   +    +    +
Sbjct: 326 TFMTV--CDRVIK-------ELQLDVENLLLAQGTLRPDLIESGSKYASVNAAAIKTHHN 376

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +  +          +  PL D  K+ VR+L   +G+ 
Sbjct: 377 DTAVVRLLRDA--GRIIEPLCDYHKDEVRELGARLGIP 412


>gi|296501081|ref|YP_003662781.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus thuringiensis BMB171]
 gi|296322133|gb|ADH05061.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus thuringiensis BMB171]
          Length = 466

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 171 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 216

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F       E P     +  N  +       
Sbjct: 217 VMKT---------FSEGFHMNVIKVDARDRFMDKLKGVEDPEQKRKIIGNEFIYV--FDD 265

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 266 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 315

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 316 PLNTLFKDEVRVLGSELGIP 335


>gi|218674465|ref|ZP_03524134.1| argininosuccinate synthase [Rhizobium etli GR56]
          Length = 399

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+  
Sbjct: 1   KVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKKA 47

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
           + + +   Y+ D  E F    + P   + AA E          R +    L+ + R+ GA
Sbjct: 48  EMLGIKEIYIEDVREEFVRDFVFPMFRANAAYEGVYLLGTSIARPLISKHLIDIARKTGA 107

Query: 139 DVLATG 144
           D +A G
Sbjct: 108 DAIAHG 113


>gi|15837601|ref|NP_298289.1| argininosuccinate synthase [Xylella fastidiosa 9a5c]
 gi|24211536|sp|Q9PEM9|ASSY_XYLFA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|9105933|gb|AAF83809.1|AE003937_13 argininosuccinate synthase [Xylella fastidiosa 9a5c]
          Length = 401

 Score = 56.7 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               +V+A SGG+D+S     LK  GY V  V          +   G     +D  + R 
Sbjct: 2   SKKNIVLAFSGGLDTSFCIPYLKEQGYAVHTVF---------ADTGGVNEEERDFIEKR- 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + V SH   D      +  +     +    +   P +  +R +    +L     LG
Sbjct: 52  -AAELGVASHLTVDGGPAIWDGFVKQLVWTGETYQGQYPLLVSDRYLIVDAVLQRADALG 110

Query: 138 ADVLATG 144
              +A G
Sbjct: 111 TCAVAHG 117


>gi|296129494|ref|YP_003636744.1| argininosuccinate synthase [Cellulomonas flavigena DSM 20109]
 gi|296021309|gb|ADG74545.1| argininosuccinate synthase [Cellulomonas flavigena DSM 20109]
          Length = 412

 Score = 56.3 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 65/200 (32%), Gaps = 39/200 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G +VI V                   G+D+   RR  
Sbjct: 4   RVVLAYSGGLDTSVGIGWIAEATGAEVIAV------------AVDVGQGGEDLEVIRRRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  YV D  + F     +P   +        P V   +R V    L+   RQ GA
Sbjct: 52  LDCGAVEAYVADARDEFAAEYCMPALKANGLYLDRYPLVSALSRPVIVKHLVRAARQFGA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
             +A G                   C       DQ  F    T          P+ D  +
Sbjct: 112 TTVAHG-------------------CTGK--GNDQVRFEVGITSLAPDLKCLAPVRDLAL 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            ++   + A +  L IA   
Sbjct: 151 TRDKAIEYAEKHKLPIATTK 170


>gi|283853758|ref|ZP_06370984.1| ExsB family protein [Desulfovibrio sp. FW1012B]
 gi|283570852|gb|EFC18886.1| ExsB family protein [Desulfovibrio sp. FW1012B]
          Length = 272

 Score = 56.3 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 70/224 (31%), Gaps = 48/224 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+VA SGG DS++V   +     G +V+ VTL                   +V  AR   
Sbjct: 19  VLVAFSGGTDSTLVLRAVLDALPGENVLAVTLA-----------APYTPAFEVAAAREAA 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++   H V      F  AV             P  C  C R + F  L       G   
Sbjct: 68  KSMGARHEVV--AVPFPEAV---------RDNPPDRCYACKRLL-FGLLADRAAGRGLAH 115

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G          D G  R  +    +L    S  L+A               + K  V
Sbjct: 116 VCDG------TNADDLGDHRPGLKAVRELGVA-SPLLWA--------------GLAKADV 154

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           R L+RE GL   D       C + +  + + V          G+
Sbjct: 155 RRLSRERGLATWDAP--AGACLLTRLPHGERVTEAGLRRIEAGE 196


>gi|171914097|ref|ZP_02929567.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 506

 Score = 56.3 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 61/196 (31%), Gaps = 43/196 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGGVDS+V+A LL + G  V          ++            +  + +     
Sbjct: 215 VICGVSGGVDSTVLAVLLHKAG--V---------KQRCLFVDHGLLRKNESEEVQAQFKE 263

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR--QL 136
           + V   V D  E F  A           G T     +  R +  +  L          +L
Sbjct: 264 VGVPIEVVDARETFLGA---------LKGVT---DPEAKRKIIGNLFLDVFFGAADHIEL 311

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPM--DLERDQSYFLFATTQQQLCDLRFPLGD 194
            A        I S        K +    R       +DQ              +  PL +
Sbjct: 312 MAQGTLYPDVIESATSGSIASKIKTHHNRVDRVLELKDQ------------GRVIEPLAE 359

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L   +G+ 
Sbjct: 360 LFKDEVRALGEALGIP 375


>gi|153208935|ref|ZP_01947148.1| GMP synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165924007|ref|ZP_02219839.1| GMP synthase [Coxiella burnetii RSA 334]
 gi|212218751|ref|YP_002305538.1| GMP synthase [Coxiella burnetii CbuK_Q154]
 gi|226738429|sp|B6J7Z4|GUAA_COXB1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120575593|gb|EAX32217.1| GMP synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165916552|gb|EDR35156.1| GMP synthase [Coxiella burnetii RSA 334]
 gi|212013013|gb|ACJ20393.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii CbuK_Q154]
          Length = 524

 Score = 56.3 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +     +V+V +SGGVDS+V A L+++     IG      +               +
Sbjct: 220 DIQEKVGKEQVIVGLSGGVDSAVTATLVRKA----IG------DQLVCVLVDTGLLRLNE 269

Query: 73  VYDARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYA---AGETPLPCVDCNRTVKFSD 128
           V +   V    +       D ++RF  A+            AGE                
Sbjct: 270 VDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQF-----------IRV 318

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                ++L    L  G      +        +  + +           +          L
Sbjct: 319 FEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHN-------VGGLPLNMELKL 371

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+GL 
Sbjct: 372 IEPLRELFKDEVRKLGLELGLP 393


>gi|148265151|ref|YP_001231857.1| GMP synthase [Geobacter uraniireducens Rf4]
 gi|146398651|gb|ABQ27284.1| GMP synthase (glutamine-hydrolyzing) [Geobacter uraniireducens Rf4]
          Length = 516

 Score = 56.3 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 28/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSVVA L+ +  G  +  V +     RK    K      +         
Sbjct: 221 RVLCALSGGVDSSVVAVLIHKAIGDQLHCVFVNNGLLRKGEAEKVVNLFSKHFR------ 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
               ++    D  +RF         S  +  ET    +  N  +         +++G  D
Sbjct: 275 ----INLDYVDASDRFLEK-----LSGVSDPETK-RKIIGNEFI--YLFEEEAKKIGKVD 322

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G  +   +      K    + +           +    ++    L  P+ ++ K+ 
Sbjct: 323 YLAQG-TLYPDVIESVSTKGPSAVIKSHHN-------VGGLPEKMNLKLLEPVRELFKDE 374

Query: 200 VRDLAREMGLD 210
           VR L +E+G+ 
Sbjct: 375 VRLLGKELGMP 385


>gi|312144175|ref|YP_003995621.1| GMP synthase, large subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904826|gb|ADQ15267.1| GMP synthase, large subunit [Halanaerobium sp. 'sapolanicus']
          Length = 512

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 35/202 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +V+  +SGGVDS+V +A++ +  G  +  +            RKG     + 
Sbjct: 210 IRKQVGKGKVICGLSGGVDSAVASAIVHKAIGDQLTCIF-----VDHGLLRKGEAKQVR- 263

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
               R   +  N+     D +ERF +    V  P A     GE           +K    
Sbjct: 264 ----RTFGEEFNIPLIYVDAKERFLDKLSGVSEPEAKRKIIGE---------EFIKV--F 308

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +L     L  G      +  G  G  +    +           +     +   +L
Sbjct: 309 DEEAEKLENVRYLVQGTIYSDVIESG--GTEKSATIKSHHN-------VGGLPDEMNLEL 359

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +   +GL 
Sbjct: 360 VEPLHFLFKDEVRKIGEVLGLP 381


>gi|294665912|ref|ZP_06731178.1| argininosuccinate synthase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604316|gb|EFF47701.1| argininosuccinate synthase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 413

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 3   VSEATRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +S+ T   + +        + +V+A SGG+D+S     L+  GY V  V           
Sbjct: 1   MSQQTASTNPESPIPTSGTKDIVLAFSGGLDTSFCIPYLQERGYAVHTVF---------- 50

Query: 62  KRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                    ++     +    +   SH   D      +  + PF  +    +   P +  
Sbjct: 51  -ADTGGVDAEEREFIEKRAAELGAASHVTVDGGPAIWDGFVKPFVWAGEGYQGQYPLLVS 109

Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144
           +R +     L    +LG  ++A G
Sbjct: 110 DRYLIVDAALKRAEELGTRIIAHG 133


>gi|92114249|ref|YP_574177.1| argininosuccinate synthase [Chromohalobacter salexigens DSM 3043]
 gi|119361263|sp|Q1QVN0|ASSY_CHRSD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|91797339|gb|ABE59478.1| argininosuccinate synthase [Chromohalobacter salexigens DSM 3043]
          Length = 406

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVKWLQET-YDCEVVTF-----------TADIGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVKEIYIEDLREEFVRDYVYPMFRANTIYEGEYLLGTSIARPLIAKR------LVEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|147920112|ref|YP_686126.1| hypothetical protein RCIA125 [uncultured methanogenic archaeon
           RC-I]
 gi|110621522|emb|CAJ36800.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 271

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 77/217 (35%), Gaps = 62/217 (28%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V+VA SGGVDS+    LL+      G D V+ VT    +S    + +G       +  AR
Sbjct: 23  VLVAFSGGVDST---FLLRCAVDTLGPDQVVAVTAT--SSTLPPEERGYAVELAGLIGAR 77

Query: 78  RV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            V    D +       D+                 A   P  C  C + V+++ L  V +
Sbjct: 78  HVLIHADELGSP----DF-----------------AANPPNRCYYC-KQVRYTALKQVQQ 115

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-- 192
           +LG + +  G          D G  R  M    +L                  +R PL  
Sbjct: 116 ELGIESIIDG------ANADDTGDYRPGMAAGRELG-----------------VRSPLLE 152

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
             + K  +R+L+++ GL   D+      C   +  Y 
Sbjct: 153 AGLSKSEIRELSKQAGLPTWDRPS--GACLASRFPYG 187


>gi|331092233|ref|ZP_08341061.1| GMP synthase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401665|gb|EGG81244.1| GMP synthase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 513

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         +   
Sbjct: 215 DGKVLCALSGGVDSSVAAVMLSKAVGKQLTCVF---VDHGLLRKNEGDEVEAVFGPEG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +++    + +ERF N +                 +     ++        +++GA
Sbjct: 270 ---NYDLNFIRVNAQERFYNKLAGKTEPEEKRK------IIGEEFIRV--FEEEAKKIGA 318

Query: 139 -DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ-QQLCDLRFPLGDMK 196
            D L  G        V + G  +  + +           +          ++  PL D+ 
Sbjct: 319 VDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDCVDFKEIIEPLRDLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+G+ 
Sbjct: 369 KDEVRKAGLELGIP 382


>gi|298530265|ref|ZP_07017667.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509639|gb|EFI33543.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 299

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ R+++A+SGG DS  +A  L   GY+  G+ + L          GS    +D     R
Sbjct: 46  KEDRILIALSGGKDSLALARELHLLGYNTAGLYIDL-------AIPGSSETARDH--VER 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  + +S +V + E+       +P          P+ C  C R +K           G 
Sbjct: 97  FCRDLGISLHVLEMEKE-----GMPIPEVRKKFNRPV-CSVCGR-IKRYYFNRFALDNGF 149

Query: 139 DVLATGHYI 147
            VLATGH +
Sbjct: 150 SVLATGHNL 158


>gi|325291197|ref|YP_004267378.1| exsB protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966598|gb|ADY57377.1| exsB protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 231

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 49/229 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  + VV +SGG+DS++ A L  R+ G + VI +TL                  +++  A
Sbjct: 3   KKRKAVVLLSGGLDSTICAVLACREFGAENVIALTLFY-----------GQKHAREIKSA 51

Query: 77  RRVCDTINVS-HYVFDYEERFR--------------NAVIVPFASSYAAGETPLPCVDCN 121
             VC+ + +  HY     + FR                     + +Y    T +P  + N
Sbjct: 52  EAVCEHLGIPEHYTESLPDIFRGAGSTLVDPDKPNPEMTYEELSQAYGISPTYVPFRNAN 111

Query: 122 RTVKFS---DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
             +  +    L+     +     A     R+  Y     +    M   + +    SY   
Sbjct: 112 -FLSVATTVALVKEADTIFYG--AHAEDARNWAYPDCTPEFNGSMASAIYIG---SYLKV 165

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
                    L  PL  + K+ +      +G+ +    +    C+  Q K
Sbjct: 166 --------RLVTPLQWLTKKDIVA----LGITVNAPFELTWSCYNGQEK 202


>gi|170290743|ref|YP_001737559.1| GMP synthase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174823|gb|ACB07876.1| GMP synthase, large subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 504

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 29/191 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V+ A+SGGVDS+V   L  R  G  V+ V                     +       
Sbjct: 212 KKVLAAVSGGVDSTVSTLLASRVAGDKVVPVF-----------VNHGLLRKGEAESVLSS 260

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +I +     D  E F ++            E     +     +       ++ + G D
Sbjct: 261 LKSIGIDVIYVDASEEFLSS-----LKGIKDCEKKREIIG---EIFARIFSEISEREGCD 312

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G      +  G +           D  +   + +          +  PL  + K+ 
Sbjct: 313 CLLQGTLYPDVVESGAEI--------GADRIKSH-HNVAGLPPWFKGRVLEPLRYLYKDE 363

Query: 200 VRDLAREMGLD 210
           VR LA+ +G+ 
Sbjct: 364 VRKLAKYLGIP 374


>gi|90418687|ref|ZP_01226598.1| GMP synthase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336767|gb|EAS50472.1| GMP synthase [Aurantimonas manganoxydans SI85-9A1]
          Length = 518

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+  +SGGVDSSV A L+       IG         + +         +       V
Sbjct: 220 DGKVICGLSGGVDSSVAAVLIHEA----IG--------DQLTCIFVDHGLLRMNEADEVV 267

Query: 80  C---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               D  N+       ++ F +A+                     R    +      +  
Sbjct: 268 AMFRDHYNIPLVHVQAQDTFIDALEGEMDPEVKR-------KTIGRLFIETFEAEAKKIG 320

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD LA G      +          +  +           +    ++    L  PL ++ 
Sbjct: 321 GADFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMQLVEPLRELF 373

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 374 KDEVRLLGHELGLP 387


>gi|94967190|ref|YP_589238.1| hypothetical protein Acid345_0159 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549240|gb|ABF39164.1| conserved hypothetical protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 283

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 79/234 (33%), Gaps = 48/234 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDM-----RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY 55
           M VS    L+     ++ +       R++VA SGG+DS+ +A +     + V+G      
Sbjct: 1   MAVSPLPELSLEKKQQSLEAHLRSLGRLLVAYSGGIDSAYLAYVA----HQVLG------ 50

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
           ++  A     +  A   + DA    +  ++   V    E             Y      +
Sbjct: 51  DNMLAILADSASLARAQMRDALAFGEEQSIPVQVVQTSEMDS--------PDYRR-NDAM 101

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            C  C   + F+ +  V  + G   +A G      + + D G  R          +    
Sbjct: 102 RCFHCKDEL-FAVMERVATEHGYSKVAYG------VNLDDQGDFRP----GQRAAKQHGV 150

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
                              M K  +R+LAR+ GL + DK  S   C   + +Y 
Sbjct: 151 VAPLLDAA-----------MTKSDIRELARQAGLRVWDKPAS--ACLSSRIEYG 191


>gi|13541276|ref|NP_110964.1| ATPase [Thermoplasma volcanium GSS1]
          Length = 309

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77
           D+ + VA+SGG DSSV   LL +  G        +    +  +  +G        +  A+
Sbjct: 48  DVTISVALSGGKDSSVTLFLLHKILGNR------KNMKIKAFTVDEGIDGYRPSGLESAK 101

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+C ++ + H    + + +         S        +PC  C   ++   +  +  +  
Sbjct: 102 RLCTSLGIDHETISFYDSYGLT----LDSIVKTNPVKIPCAYCGP-LRRKLINEMADKQD 156

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 157 ADYVALG 163


>gi|14324659|dbj|BAB59586.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 312

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77
           D+ + VA+SGG DSSV   LL +  G        +    +  +  +G        +  A+
Sbjct: 51  DVTISVALSGGKDSSVTLFLLHKILGNR------KNMKIKAFTVDEGIDGYRPSGLESAK 104

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R+C ++ + H    + + +         S        +PC  C   ++   +  +  +  
Sbjct: 105 RLCTSLGIDHETISFYDSYGLT----LDSIVKTNPVKIPCAYCGP-LRRKLINEMADKQD 159

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 160 ADYVALG 166


>gi|121602609|ref|YP_988663.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bartonella bacilliformis KC583]
 gi|226738390|sp|A1URR0|GUAA_BARBK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120614786|gb|ABM45387.1| GMP synthase [Bartonella bacilliformis KC583]
          Length = 518

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 66/199 (33%), Gaps = 44/199 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDSSV A LL    G  +  + +     RK    +                
Sbjct: 223 RVICGLSGGVDSSVTAVLLHEAIGDQLTCIFVDHGLIRKNEAEEVLKLFR---------- 272

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL---- 136
           D  N+     +  + F NA           GET     +  R       + V  +     
Sbjct: 273 DNYNIELIHVNAADMFINA---------LEGET---DPEKKRKTIGRLFIEVFEEETKKI 320

Query: 137 -GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            GA  LA        I S   +G+    +                +    ++    L  P
Sbjct: 321 GGAKFLAQGTLYPDVIESVSAIGEAITIKSHHN------------VGGLPERMNMKLVEP 368

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L RE+GL 
Sbjct: 369 LRELFKDDVRSLGRELGLP 387


>gi|312793382|ref|YP_004026305.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180522|gb|ADQ40692.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 276

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDS+     L +  YDV+G      +   A     S    +++ DA      I
Sbjct: 27  AVAYSGGVDST----FLVKVAYDVLG------DRVIAVTATSSTYPKRELNDAITFIKQI 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
              H +            +        G    P   C  C + + F  +  V +  G + 
Sbjct: 77  GAKHII------------IESEELEIEGFNKNPVDRCYYCKKEL-FEKIWKVAKAHGIEY 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +A G          D    R  M    +L                  +  PL    + KE
Sbjct: 124 VADG------SNFDDLNDFRPGMKAACELN-----------------VVSPLKVAGLTKE 160

Query: 199 SVRDLAREMGLDIADKS 215
            +R L++E+GL   DK 
Sbjct: 161 DIRKLSKELGLPTWDKP 177


>gi|256546122|ref|ZP_05473475.1| PP-loop family protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398239|gb|EEU11863.1| PP-loop family protein [Anaerococcus vaginalis ATCC 51170]
          Length = 270

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 29/142 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAAL---LKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  +V  A+SGG DS + A L   L +     ++V  + +          ++      +
Sbjct: 34  NEGDKVACAISGGKDSLLTAKLVEELHKHSNVNFEVEYICM-----DPGYDKENRDLLEK 88

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           ++         +N+        + F + V     S   +GE   PC  C   ++   L +
Sbjct: 89  NLKY-------LNIP------AKIFDSDVFE--ISEKISGE--YPCYMC-ARMRRGFLYA 130

Query: 132 VTRQLGADVLATGHYIRSRLYV 153
             ++LG + +A GH++   +  
Sbjct: 131 KAKELGCNKVALGHHMNDAIET 152


>gi|153951376|ref|YP_001398269.1| NAD+ synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|189030352|sp|A7H439|NADE_CAMJD RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|152938822|gb|ABS43563.1| NAD+ synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 246

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 43/196 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN +   VV+ +SGG+DS++VA L KR    +V    +                   ++ 
Sbjct: 19  KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFAFLM-----------PTQISNKTNLE 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   + 
Sbjct: 68  DALRLCVDLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRMSLLYDYSA 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                        ++ L +G   K   ++              + T    L     P+G 
Sbjct: 122 M------------KNSLVIGTSNKSELLL-------------GYGTIYGDLAYAFNPIGS 156

Query: 195 MKKESVRDLAREMGLD 210
           + K  +  LA+ + L 
Sbjct: 157 LYKSEIYALAKYLNLH 172


>gi|156059236|ref|XP_001595541.1| hypothetical protein SS1G_03630 [Sclerotinia sclerotiorum 1980]
 gi|154701417|gb|EDO01156.1| hypothetical protein SS1G_03630 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 42/208 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+       IG      +   A           +    R+
Sbjct: 233 EKGQVLGAVSGGVDSTVAAKLMHEA----IG------DRFHAVLVNNGVMRLNECEQVRK 282

Query: 79  -VCDTINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCN--R 122
            + + + ++  V D  E+F            +   I   F   + A    +     N  +
Sbjct: 283 TLTENLGINLIVADASEQFLDGLAGLDEPEAKRKFIGGKFIDVFEAEAKKIEDAAANSDK 342

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             K    L  T             I S  + G     +         +R         T+
Sbjct: 343 AGKIEFFLQGTL--------YPDVIESISFKGPSATIKTHHNVGGLPKR--------MTE 386

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
            Q   L  PL ++ K+ VR L RE+G+ 
Sbjct: 387 GQGLKLIEPLRELFKDEVRQLGRELGIA 414


>gi|71666942|ref|XP_820425.1| GMP synthase [Trypanosoma cruzi strain CL Brener]
 gi|70885769|gb|EAN98574.1| GMP synthase, putative [Trypanosoma cruzi]
          Length = 657

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 24/208 (11%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++  +  +V+   SGGVDS+V A LL +  G + V+ V      ++L  + +        
Sbjct: 216 ERTAQGQKVLCLASGGVDSTVCAVLLLKALGPERVVCVHIDHGFMRLRETEEVVAALREA 275

Query: 68  CAGQDVYDARR----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                V  AR         +        Y  R    V  P       G T +    C+  
Sbjct: 276 GVSVVVVHARAQFAEATTEMPARRKCAPYRTRKLCEVTDPEEKRVIIGNTFMSV--CDTV 333

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR-PMDLERDQSYFLFATTQ 182
           ++      +   +   +LA G     R  + + G     +    +    + +  +     
Sbjct: 334 IR-----DLQLDVNNLLLAQG---TLRPDLIESGSSYASLTADAIKTHHNDTALVRQLRD 385

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +  PL D  K+ VR+L   +G+ 
Sbjct: 386 A--GRIIEPLCDYHKDEVRELGVRLGIP 411


>gi|169824156|ref|YP_001691767.1| PP family ATPase [Finegoldia magna ATCC 29328]
 gi|302380842|ref|ZP_07269305.1| PP-loop family protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234889|ref|ZP_07321514.1| PP-loop family protein [Finegoldia magna BVS033A4]
 gi|167830961|dbj|BAG07877.1| ATPases of the PP superfamily [Finegoldia magna ATCC 29328]
 gi|302311337|gb|EFK93355.1| PP-loop family protein [Finegoldia magna ACS-171-V-Col3]
 gi|302494007|gb|EFL53788.1| PP-loop family protein [Finegoldia magna BVS033A4]
          Length = 275

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 19/126 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++ V MSGG DS ++A L +    +   G  +  ++    +   G       +   +   
Sbjct: 39  KIAVCMSGGKDSLLLAKLFQELQKH---G--MNNFDLEFIAMNPGYSEENTRLE--KENF 91

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N+ ++++D        V     S   +     PC  C   ++   L S  ++LG + 
Sbjct: 92  EKLNIPYHMYD------TDVFS--VSEKISSN--NPCYMC-ARMRRGALYSKAKELGCNK 140

Query: 141 LATGHY 146
           +A GH+
Sbjct: 141 MALGHH 146


>gi|118592068|ref|ZP_01549462.1| argininosuccinate synthase [Stappia aggregata IAM 12614]
 gi|118435364|gb|EAV42011.1| argininosuccinate synthase [Stappia aggregata IAM 12614]
          Length = 406

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 57/211 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQTELGCEVVTFT-------------ADLGQGEELEPARKK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + + +   Y+ D  E F    + P   +       Y  G +    +   R      L+ 
Sbjct: 54  AEMLGIKEIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKR------LIE 107

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDL 188
           + ++ GAD +A G                           DQ  F    +A        +
Sbjct: 108 IAKETGADAIAHG---------------------ATGKGNDQVRFELSAYALNPDI--KV 144

Query: 189 RFPLGDMK-KE--SVRDLAREMGLDIADKSD 216
             P  D   K    + + A +  + +     
Sbjct: 145 IAPWRDWTFKSRTDLLEFAEQHQIPVPKDKR 175


>gi|91773400|ref|YP_566092.1| hypothetical protein Mbur_1431 [Methanococcoides burtonii DSM 6242]
 gi|91712415|gb|ABE52342.1| ATPase of the PP-loop superfamily [Methanococcoides burtonii DSM
           6242]
          Length = 267

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 72/212 (33%), Gaps = 43/212 (20%)

Query: 19  KDMRVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +V+VA SGGVDSS   A      G + + VTL                   ++  A+
Sbjct: 16  KKEKVLVAFSGGVDSSTLAALAFAALGDNALAVTL-----------YSPMIPQSELEYAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R  + I + H V D+            +        P  C  C +      L  V  + G
Sbjct: 65  RTAEVIGIKHIVLDH---------DILSDERIRINDPQRCYYCKKQF-VKKLKGVASEEG 114

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            +V+  G          +   RR  +    +     S F                 D+ K
Sbjct: 115 LNVIMEG------TNASEITGRRPGLEALREAGS--SIFTPYVDF-----------DVSK 155

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
             VR +A  +GLD+A++  +   C + +  Y 
Sbjct: 156 REVRQMASYLGLDVANRPSN--SCLLSRLPYG 185


>gi|46143711|ref|ZP_00134556.2| COG0519: GMP synthase, PP-ATPase domain/subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 478

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 180 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 231

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 232 -------DKFGLNIIRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 276

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 277 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 329

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 330 RELFKDEVRKIGLALGLP 347


>gi|331702163|ref|YP_004399122.1| GMP synthase [Lactobacillus buchneri NRRL B-30929]
 gi|329129506|gb|AEB74059.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 517

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           + +   L    + +   D +V++ +SGGVDSSVV  LL +  G  +  +           
Sbjct: 205 MDDFIDLQIQHIREEVGDKKVLLGLSGGVDSSVVGVLLHKAIGKQLTSIF--------VD 256

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                      V D   +     ++    D ++RF + +                 +  N
Sbjct: 257 HGLLRKNEADQVMD--SLVGKFGLNIIKVDAQDRFLSKLKGVTDPEKKRK------IIGN 308

Query: 122 RTVK-FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
             ++ F+D    ++  G D LA G      +  G D  +     +           +   
Sbjct: 309 EFIQVFND--EASKLHGIDFLAQGTLYTDVVESGTDTAQT---IKSHHN-------VGGL 356

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +     L  PL  + K+  R +  ++G+ 
Sbjct: 357 PEDMKFKLIEPLNTLFKDEARAIGEKLGMP 386


>gi|313885656|ref|ZP_07819405.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619021|gb|EFR30461.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 518

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 29/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSVV  LL++  G  ++ +     +     K +G             
Sbjct: 224 NRKVLLGLSGGVDSSVVGVLLQKAIGDQLVCIF---VDHGLLRKNEGD--------SVMA 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +   +     D ++RF   +                 V       F D    ++  G 
Sbjct: 273 TLEQFGLHIIRVDAKDRFLGKLAGVADPERKRKIIGNEFVYV-----FDD--EASKLNGI 325

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +  G D  +     +           +    +    +L  PL  + K+
Sbjct: 326 DFLAQGTLYTDVIESGTDSAQT---IKSHHN-------VGGLPEDMQFELIEPLNTLFKD 375

Query: 199 SVRDLAREMGLD 210
            VR L   +G+ 
Sbjct: 376 EVRALGEALGMP 387


>gi|262277406|ref|ZP_06055199.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [alpha proteobacterium HIMB114]
 gi|262224509|gb|EEY74968.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [alpha proteobacterium HIMB114]
          Length = 520

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 43/200 (21%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRK-ASKRKGSCCAG 70
            K+ +++ A+SGGVDSSV+A LL +    +++ V      ++L  + +            
Sbjct: 220 KKNEKILCALSGGVDSSVLAHLLLKAVKKNLVCVYVDTGLMRLGETEEINKIFSKKFKKI 279

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVK-FS 127
               DA+++                        F         P     +  N  +K F 
Sbjct: 280 FYKIDAKKI------------------------FLKKLKNIHDPEKKRKIIGNTFIKIFE 315

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +     R+     LA G      +           + +           +    ++    
Sbjct: 316 NFTK--RKKNIKFLAQGTLYPDLIESKSFSGSPTSIIKSHHN-------VGGLPKKMKLK 366

Query: 188 LRFPLGDMKKESVRDLAREM 207
           L  P  +M K+ VR + + +
Sbjct: 367 LIEPFNEMFKDEVRKIGKSL 386


>gi|301063984|ref|ZP_07204449.1| thiamine biosynthesis protein [delta proteobacterium NaphS2]
 gi|300441895|gb|EFK06195.1| thiamine biosynthesis protein [delta proteobacterium NaphS2]
          Length = 323

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 80/250 (32%), Gaps = 55/250 (22%)

Query: 28  SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVCDTINVS 86
           SGG+DS +   L++  G DV+ +                        D AR   +++ + 
Sbjct: 8   SGGLDSMLAVELMRAQGIDVLALFF---------------ETPFFTSDRARISANSMRLP 52

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
               D  ER    V  P    +  G    PC+DC+  + F     +     A  + +G  
Sbjct: 53  FKAVDITERHLEVVKNP---KHGYGGNMNPCIDCHALM-FRIAGEMLGSEAASFVFSGEV 108

Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-------------- 192
           +  R    +         +      D+   L     + L     PL              
Sbjct: 109 MGQRPMSQN---------KKALALVDRESGLHGLLLRPLSAKCLPLTVPETEGWVARERL 159

Query: 193 ----GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-- 246
               G  +K  +  +A ++ L   D       C + +    +  +R+   +  +  ++  
Sbjct: 160 LGIQGRSRKPQM-AMAEQLNLG--DYPSPAGGCLLTE---KEFSRRLKDLLIRDSQVITP 213

Query: 247 HLNGQILGRH 256
           HL    LGRH
Sbjct: 214 HLEALKLGRH 223


>gi|284163768|ref|YP_003402047.1| NAD+ synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284013423|gb|ADB59374.1| NAD+ synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 264

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 42/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G + V G+ L                +  ++ DA RV  
Sbjct: 35  VLGLSGGIDSTLTAHLAVEALGAENVHGLVL-----------PARVSSEGNMSDAERVAQ 83

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +S+ V + E      ++     +Y   E     V  N   +   +L+       + L
Sbjct: 84  DLEISYDVIEVEP-----IVDALLEAYPEAEGDREAVG-NARARARAVLNYLVANHEERL 137

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   RS   VG                    YF         C    P+G++ K  VR
Sbjct: 138 VLGTGNRSEAAVG--------------------YFTKYGDGAVDCH---PIGNLYKAQVR 174

Query: 202 DLAREMGLD 210
            LAR +G+ 
Sbjct: 175 QLARHVGVP 183


>gi|237752293|ref|ZP_04582773.1| GMP synthase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375782|gb|EEO25873.1| GMP synthase [Helicobacter winghamensis ATCC BAA-430]
          Length = 852

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 70/198 (35%), Gaps = 39/198 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSVVA LL R  G ++I V            RKG   A + ++      
Sbjct: 554 KVLCAVSGGVDSSVVATLLYRAIGENLIPVF-----VDTGLLRKGEREAVEAMFR----- 603

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDC-----NRTVKFSDLLSV 132
           + + V   V D  E F      V  P       GET +   +      N   +   L   
Sbjct: 604 ENLKVPLIVADARELFLGRLKGVTDPEKKRKIIGETFIEVFEAEAKKHNTKGEIKFL--- 660

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                A        I S    G     +                +    +    +L  PL
Sbjct: 661 -----AQGTLYPDVIESVSVKGPSKTIKSHHN------------VGGLPEWMKFELIEPL 703

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L RE+G+ 
Sbjct: 704 RELFKDEVRALGRELGMP 721


>gi|237751009|ref|ZP_04581489.1| guanosine monophosphate synthetase GuaA [Helicobacter bilis ATCC
            43879]
 gi|229373454|gb|EEO23845.1| guanosine monophosphate synthetase GuaA [Helicobacter bilis ATCC
            43879]
          Length = 1864

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 70/198 (35%), Gaps = 39/198 (19%)

Query: 22   RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+ A+SGGVDSSVVA LL R  G ++I V            RKG   A + ++      
Sbjct: 1566 KVLCAVSGGVDSSVVATLLYRAIGENLIPVF-----VDTGLLRKGEREAVEAMFR----- 1615

Query: 81   DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDC-----NRTVKFSDLLSV 132
            + + V   V D  E F      V  P       GET +   +      N   +   L   
Sbjct: 1616 ENLKVPLIVADARELFLGRLKGVTDPEKKRKIIGETFIEVFEAEAKKHNTKGEIKFL--- 1672

Query: 133  TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                 A        I S    G     +                +    +    +L  PL
Sbjct: 1673 -----AQGTLYPDVIESVSVKGPSKTIKSHHN------------VGGLPEWMKFELIEPL 1715

Query: 193  GDMKKESVRDLAREMGLD 210
             ++ K+ VR L RE+G+ 
Sbjct: 1716 RELFKDEVRALGRELGMP 1733


>gi|20094539|ref|NP_614386.1| ATPase [Methanopyrus kandleri AV19]
 gi|19887658|gb|AAM02316.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 303

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 21/94 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY-------DVIGVTLQLYNSRKASKRKGSCCAGQD 72
             R+VVA+SGG DSS+   L+    Y       +VI +T+        S  + +C     
Sbjct: 48  GQRIVVALSGGKDSSLALRLVTE--YVEPLPEVEVIALTV----DEGISGFRDACLRA-- 99

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVP 103
              A RV D ++V H V  +EE +      V+  
Sbjct: 100 ---AERVADELDVEHEVVSFEEEYGFALEEVVED 130


>gi|332111600|gb|EGJ11582.1| GMP synthase [Rubrivivax benzoatilyticus JA2]
          Length = 534

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 66/193 (34%), Gaps = 26/193 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGEQLTCVF---VDHGLLRLNEGD-----MVMD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  E F      V  P A     G   +  V      K        +  GA
Sbjct: 275 KLHARVIRVDASELFLGELAGVSDPEAKRKIIGRLFV-DVFKAEAAKLKAGTEGHK--GA 331

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
             LA G      +  G    ++    +           +     +QL   L  PL D+ K
Sbjct: 332 TFLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLP-EQLGLKLLEPLRDLFK 383

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 384 DEVRELGVALGLP 396


>gi|293372701|ref|ZP_06619083.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f]
 gi|292632510|gb|EFF51106.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f]
          Length = 426

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D ++++A+SGG DS V    +L   GY         +   K S R        D    R+
Sbjct: 19  DDKILIALSGGADS-VALLYILHTAGYHCEAAHCNFHLRGKESDR--------DELFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + +  +  D+               + + E         R +++     + ++  A
Sbjct: 70  LCERMEIHLHTIDFNTT------QYATEKHISIE------MAARELRYQWFEKIRKKCQA 117

Query: 139 DVLATGHY 146
           DV+A  H+
Sbjct: 118 DVVAVAHH 125


>gi|170761419|ref|YP_001788611.1| GMP synthase [Clostridium botulinum A3 str. Loch Maree]
 gi|226738425|sp|B1L1J7|GUAA_CLOBM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169408408|gb|ACA56819.1| GMP synthase [Clostridium botulinum A3 str. Loch Maree]
          Length = 510

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKAIGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D   ++    + ++RF   +                 +     ++        ++LG 
Sbjct: 267 --DQFEMNLIRVNAQDRFLGKLKGVSDPERKRK------IIGEEFIRV--FEEEAKKLGD 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          + + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDIVESGTNTSATIKSHHN-------VGGLPEDMEFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|126179843|ref|YP_001047808.1| GMP synthase subunit B [Methanoculleus marisnigri JR1]
 gi|166215314|sp|A3CWS6|GUAAB_METMJ RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|125862637|gb|ABN57826.1| GMP synthase (glutamine-hydrolyzing) [Methanoculleus marisnigri
           JR1]
          Length = 305

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 45/204 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++     + +VV+A+SGGVDSSV AAL  R  G  ++ +            RKG     +
Sbjct: 14  EIRDAAGEDKVVMALSGGVDSSVCAALATRAIGDQLVPIY-----VDTGLMRKGETDRIR 68

Query: 72  DV-YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF- 126
            +  DA         +  V D  + F  A   ++ P                     KF 
Sbjct: 69  SLFADA---------NLRVVDAADEFFEALAGIVDP--EEKRKAI----------GAKFI 107

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  ++ GA +L  G     R+    +G  +                       +  
Sbjct: 108 RIFEREAKRTGATMLLQGTIYPDRIES--EGGIKSHHNVGGMPL-----------DIEFK 154

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL D+ K+ VR++A  +GL 
Sbjct: 155 GVIEPLADLYKDEVREVAGGLGLP 178


>gi|89100241|ref|ZP_01173108.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. NRRL B-14911]
 gi|89085091|gb|EAR64225.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. NRRL B-14911]
          Length = 517

 Score = 56.3 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 44/217 (20%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     + +  + +   D +V+ A+SGGVDSSVVA L+ +  G  +  +           
Sbjct: 205 MENFIEIETEKIRQAVGDKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGL 259

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL- 115
            RKG          A  V  T         + E F   VI       F +       P  
Sbjct: 260 LRKGE---------AESVMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQ 301

Query: 116 -PCVDCNRTV-KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
              +  N  +  F D     +  G + LA G        + + G       +        
Sbjct: 302 KRKIIGNEFIYVFDD--EAAKLEGIEFLAQG---TLYTDIIESGTATAQTIKSHHN---- 352

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              +    +     L  PL  + K+ VR L  E+G+ 
Sbjct: 353 ---VGGLPEDMQFKLIEPLNTLFKDEVRALGTELGIA 386


>gi|301106300|ref|XP_002902233.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans
           T30-4]
 gi|262098853|gb|EEY56905.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans
           T30-4]
          Length = 665

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 43/205 (20%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAAL---LKRDGYD--VIGVTLQLYNSRKASKRKGSCCAG 70
           K  +   + V++SGGVDS VVA L   LK    D  ++ V L   +     +    C   
Sbjct: 220 KASEYSHMAVSLSGGVDSMVVAYLMHKLKEKHGDFTIVAVHL---DYGNRPESGAEC--- 273

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDL 129
                 RR C+   +  +V                       T     +  +R +++S  
Sbjct: 274 ---DYVRRWCERFGIVFHV-------------RRIDEVKRATTRRDDYEKISREIRYSTY 317

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER----DQSYFLFATTQQQL 185
             V ++     +  GH                 M + + L        S  +        
Sbjct: 318 AEVMQKYHIPGMCFGH-----HRGDVQENVISNMMKGLSLLNLNGMQASSVVNGV----- 367

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D++K+ + + A   G+ 
Sbjct: 368 -RIWRPLLDLEKDVIFEFAHRYGVP 391


>gi|157813158|gb|ABV81324.1| putative GMP synthetase [Cydia pomonella]
          Length = 194

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 19/82 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V AALL+          VI + +     RK    K   C        
Sbjct: 46  KVLVLVSGGVDSTVCAALLRTALREDQ---VIALHIDNGFMRKNESSKVERCL------- 95

Query: 77  RRVCDTINVSHYVFDYEERFRN 98
                 + V  +V +   +FR 
Sbjct: 96  ----RELGVRLHVVNASHQFRQ 113


>gi|295104134|emb|CBL01678.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii SL3/3]
          Length = 253

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 34/136 (25%)

Query: 22  RVVVAMSGGVDSSVVA-----ALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           RV+V +SGG DS V        L K  G  Y+V+ VTL                      
Sbjct: 16  RVMVGVSGGKDS-VALTIGLSMLRKYIGFDYEVVAVTL-------------DPQFDHQPM 61

Query: 75  DARRVCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D   + +      + + V       R   I P    Y   +   PC  C   ++   L +
Sbjct: 62  DYSALAELFRQHGIPYEV-------RRTEIGPVVFEYRKEK--NPCALC-AKLRRGALHT 111

Query: 132 VTRQLGADVLATGHYI 147
             ++LG + +A GH++
Sbjct: 112 AAQELGCNKVALGHHL 127


>gi|256830263|ref|YP_003158991.1| GMP synthase, large subunit [Desulfomicrobium baculatum DSM 4028]
 gi|256579439|gb|ACU90575.1| GMP synthase, large subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 515

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 66/216 (30%), Gaps = 62/216 (28%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-------------------GYDVIGVTLQL 54
           L +   D +VV  +SGG+DS+VVA LL +                    G +VIG  L+ 
Sbjct: 212 LPEQIGDDKVVCGLSGGIDSTVVAVLLNKAIGKNLHCIFVDNGLLRAGEGDEVIG-YLRQ 270

Query: 55  YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
           +        K        +           +  Y   + E F           Y A  T 
Sbjct: 271 HFDLNLHYIKAQDKFLSRLEGLEDPEQKRKIIGYT--FIEVFEEEAKKIPGVKYLAQGTL 328

Query: 115 LPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
            P V  + + K           G   +   H+                            
Sbjct: 329 YPDVIESISFK-----------GPSAVIKSHHN--------------------------- 350

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    ++    L  PL ++ K+ VR +A+E+GL 
Sbjct: 351 --VGGLPEKMDLALVEPLRELFKDEVRKVAQELGLP 384


>gi|124024748|ref|YP_001013864.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus str. NATL1A]
 gi|226739660|sp|A2BZD9|GUAA_PROM1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123959816|gb|ABM74599.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. NATL1A]
          Length = 528

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSS +A LL +     IG  L      +   RKG        +D    
Sbjct: 224 DKKVLLALSGGVDSSTLAFLLNKA----IGPQLTCMFIDQGFMRKGEPEFLMSFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            +   ++    +  ERF +            G T     +  R +            + +
Sbjct: 276 -EKFKINVEYINARERFISQ---------LKGVT---DPEQKRKIIGREFIRVFEEESLR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESSGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + + +GL 
Sbjct: 381 RLFKDEVRKVGKSLGLP 397


>gi|330506698|ref|YP_004383126.1| GMP synthase subunit B [Methanosaeta concilii GP-6]
 gi|328927506|gb|AEB67308.1| GMP synthase, subunit B [Methanosaeta concilii GP-6]
          Length = 302

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 51/210 (24%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKR 63
           N++   K     R ++ +SGGVDSSV A L  R  G  ++ V      ++   S +  + 
Sbjct: 9   NAIAEIKRDIKGRAIIGLSGGVDSSVCAMLAHRALGDRLVPVYVDSGLMRQSESDRIEEL 68

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDC 120
                              +       + ++RF  A   V+ P       GET       
Sbjct: 69  F----------------KDLG--LVRVNAQDRFLEALKGVVDPEEKRMVVGETF------ 104

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                        R++G D L  G     R+    DG  +                    
Sbjct: 105 -----IRVFEEEARRIGGDCLIQGTIYPDRIES--DGGIKAHHNVGGLP----------- 146

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           ++ +  ++  PL D+ K+ VR +AR + L 
Sbjct: 147 SRIEFKNIVEPLRDLYKDEVRQVARALSLS 176


>gi|308184782|ref|YP_003928915.1| GMP synthase [Helicobacter pylori SJM180]
 gi|308060702|gb|ADO02598.1| GMP synthase [Helicobacter pylori SJM180]
          Length = 508

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+G+ 
Sbjct: 358 PLRELFKDEVRLLGKELGIS 377


>gi|297380221|gb|ADI35108.1| GMP synthase, C-terminal domain-containing protein [Helicobacter
           pylori v225d]
          Length = 508

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+G+ 
Sbjct: 358 PLRELFKDEVRLLGKELGIS 377


>gi|294496034|ref|YP_003542527.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
 gi|292667033|gb|ADE36882.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
          Length = 305

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 34/202 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K+ ++ VA+SGG DS V   +L     KR   +++ +T              S    + +
Sbjct: 51  KNEKIAVALSGGKDSCVALYILNKIFGKRRDLELVAIT---------VDEGISVYRERSI 101

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV- 132
             AR++   I V H +  + + +  ++    A     G     C  C    K   L++  
Sbjct: 102 EYARKLTSDIGVKHLIHSFADEYDTSLDELAAKERVHG----ACSYCGVLRK--SLVNRI 155

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-- 190
              +GA  L TGH +       D+ +   +     D+ER     +  +  ++L  L    
Sbjct: 156 ALDIGAKRLVTGHNL------DDEAQTIMMNHLGGDVER----MIRLSPPRELEGLVLRA 205

Query: 191 -PLGDMKKESVRDLAREMGLDI 211
            PL  + +  V   A+   + +
Sbjct: 206 KPLRKIPENEVELYAKVNDIPV 227


>gi|226355410|ref|YP_002785150.1| GMP synthase [Deinococcus deserti VCD115]
 gi|259647676|sp|C1D0M2|GUAA_DEIDV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226317400|gb|ACO45396.1| putative GMP synthase [Deinococcus deserti VCD115]
          Length = 511

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSS +A LL R  G  +  V +                  + V  A R  
Sbjct: 213 RVLLGISGGVDSSTLALLLARAVGERLTAVFI--------DHGLLRLGEREQVEAALRP- 263

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQ 135
             + V+    D  E F  +           G +     +  R +   + +        + 
Sbjct: 264 --LGVNLVTVDAREEFLGS---------LRGVS---DPEQKRKIIGREFIRAFERETAKL 309

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D LA G        V +               +   + +    +     L  P   +
Sbjct: 310 GDFDFLAQG---TLYPDVIESAGGHHGDKSGAANIKSH-HNVGGLPEDLKFKLVEPFRTL 365

Query: 196 KKESVRDLAREMGLD 210
            K+ VR++A+ +GL 
Sbjct: 366 FKDEVREIAQLLGLP 380


>gi|72383200|ref|YP_292555.1| GMP synthase [Prochlorococcus marinus str. NATL2A]
 gi|91206818|sp|Q46I26|GUAA_PROMT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72003050|gb|AAZ58852.1| GMP synthase (glutamine-hydrolyzing) [Prochlorococcus marinus str.
           NATL2A]
          Length = 528

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSS +A LL +     IG  L      +   RKG        +D    
Sbjct: 224 DKKVLLALSGGVDSSTLAFLLNKA----IGPQLTCMFIDQGFMRKGEPEFLMSFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            +   ++    +  ERF +            G T     +  R +            + +
Sbjct: 276 -EKFKINVEYINARERFISQ---------LKGVT---DPEQKRKIIGREFIRVFEEESLR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG  D LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFDYLAQGTLYPDVIESSGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + + +GL 
Sbjct: 381 RLFKDEVRKVGKSLGLP 397


>gi|71898759|ref|ZP_00680928.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71731524|gb|EAO33586.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 522

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 27/192 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 227 VILGLSGGVDSSVVAALLHKAIGSQLTCVF---------VDTGLLRWGEGDQVMAMF-SE 276

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADV 140
            + V+    +   R+ +A+   +             +  N  +  F +    +++  A  
Sbjct: 277 HMGVNVVRINAASRYFDALQGVYDPEAKRK------IIGNLFIQIFEE--EASKRKQAKW 328

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +Q    +  PL ++ K+ V
Sbjct: 329 LAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEQMTLGMVEPLRELFKDEV 381

Query: 201 RDLAREMGLDIA 212
           R L   MGL  A
Sbjct: 382 RRLGVAMGLPHA 393


>gi|302346698|ref|YP_003814996.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC
           25845]
 gi|302150433|gb|ADK96694.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC
           25845]
          Length = 456

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 24  VVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VA+SGG DS  VA LL  K  GY V  V    +   + S R    C          +C 
Sbjct: 22  LVALSGGADS--VALLLCIKELGYRVEAVHCNFHLRGEESLRDEQFCED--------LCQ 71

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             N+  +               F +   A    +      R +++     +   LGAD +
Sbjct: 72  RENIPLHKV------------HFDTQAYADLHKVSIEMAARELRYRYFFQLKEALGADGV 119

Query: 142 ATGHY 146
             GH+
Sbjct: 120 CVGHH 124


>gi|212710851|ref|ZP_03318979.1| hypothetical protein PROVALCAL_01919 [Providencia alcalifaciens DSM
           30120]
 gi|212686548|gb|EEB46076.1| hypothetical protein PROVALCAL_01919 [Providencia alcalifaciens DSM
           30120]
          Length = 525

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++A+SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LKEQIGDDHVLLALSGGVDSSVTALLLHRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFS 127
           + +A +V +          ++ +F   +I       F ++ A    P         V   
Sbjct: 267 LNEAEQVMEM---------FQGKFDLNIIHAKAEDRFMNALAGISDPEEKRKKIGHVFIE 317

Query: 128 DLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                + +L     LA G      +        +  + +           +    +    
Sbjct: 318 VFDEESSKLQNIKWLAQGTIYPDIIESAASATGKAHVIKSHHN-------VGGLPEDMKL 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR +  E+GL 
Sbjct: 371 GLVEPLKELFKDEVRKIGLELGLP 394


>gi|323700722|ref|ZP_08112634.1| GMP synthase, large subunit [Desulfovibrio sp. ND132]
 gi|323460654|gb|EGB16519.1| GMP synthase, large subunit [Desulfovibrio desulfuricans ND132]
          Length = 514

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +VV+ +SGG+DS+V A +L +     IG  L          R G             +
Sbjct: 217 DAKVVLGLSGGIDSTVAAVMLHKA----IGKNLHCIFVDNGLLRMGEREEVIGF-----L 267

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQ- 135
            +  +++  + D    F + +              +   +  R +   KF ++     + 
Sbjct: 268 AEHFDLNVKMVDASSEFLDNLKG------------VEDPEKKRKIIGHKFIEVFDREAKA 315

Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G + L  G  +   +   +  K    + +           +    +     L  PL +
Sbjct: 316 IKGVEFLGQG-TLYPDVIESESFKGPSAVIKSHHN-------VGGLPETMNLKLVEPLRE 367

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR  A E+GL 
Sbjct: 368 LFKDEVRRAAYELGLP 383


>gi|318043016|ref|ZP_07974972.1| GMP synthase [Synechococcus sp. CB0101]
          Length = 531

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 29/204 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      +
Sbjct: 220 DVRRQVGDKRVLLALSGGVDSSTLAFLLHKA----IGDQLTCMFIDQGFMRKGEPEFLVE 275

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
            +D        +++    +  ERF N            G T     +  R +        
Sbjct: 276 FFD-----KRFHINVEYINARERFINK---------LEGVT---DPEEKRKLIGTEFIRV 318

Query: 129 LLSVTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               +++LG  D LA G  Y       G +   +      + ++   +  +    +    
Sbjct: 319 FEEESKRLGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQF 376

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR + R +GL 
Sbjct: 377 KLVEPLRKLFKDEVRKVGRTLGLP 400


>gi|154249688|ref|YP_001410513.1| PP-loop domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153624|gb|ABS60856.1| PP-loop domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 323

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 11/78 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V+VA+S G DSS V   LK+ GY+V G+ L++     A++R             + 
Sbjct: 46  KEDKVLVAVSSGKDSSAVLYALKKLGYNVEGLFLKMGRHTNAAERV-----------VKS 94

Query: 79  VCDTINVSHYVFDYEERF 96
           + ++I V   ++D  + F
Sbjct: 95  LQESIGVPINIYDTTQHF 112


>gi|29833320|ref|NP_827954.1| argininosuccinate synthase [Streptomyces avermitilis MA-4680]
 gi|34921579|sp|Q827Z1|ASSY_STRAW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|29610442|dbj|BAC74489.1| putative argininosuccinate synthase [Streptomyces avermitilis
           MA-4680]
          Length = 404

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +  ++ P   RVV+A SGG+D+SV    + +  G +VI V                   G
Sbjct: 1   MQCEEKPVTERVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGG 48

Query: 71  QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSD 128
           +D+   R+       V   V D ++ F +   +P   + A      P V   +R      
Sbjct: 49  EDLDVIRKRALACGAVEAEVADAKDEFADEYCLPAVKANALYMDRYPLVSALSRPTIVKH 108

Query: 129 LLSVTRQLGADVLATG 144
           L++  ++ GA  +A G
Sbjct: 109 LVAAAQKHGATTVAHG 124


>gi|227823766|ref|YP_002827739.1| argininosuccinate synthase [Sinorhizobium fredii NGR234]
 gi|227342768|gb|ACP26986.1| argininosuccinate synthase [Sinorhizobium fredii NGR234]
          Length = 525

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 128 KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 174

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 175 AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 234

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 235 ADAIAHG 241


>gi|149278805|ref|ZP_01884940.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pedobacter sp. BAL39]
 gi|149230424|gb|EDM35808.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pedobacter sp. BAL39]
          Length = 509

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 66/206 (32%), Gaps = 41/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           DL +   D +VV+A+SGGVDSSV A LL +     IG  L          RK    +  +
Sbjct: 206 DLKEKLGDDKVVLALSGGVDSSVAAILLHKA----IGKNLHCIFVDNGLLRKDEYASVLE 261

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            Y        + ++    D +ERF +    V  P     A G   +              
Sbjct: 262 QY------KHLGLNIKGVDAKERFLSQLAGVTDPELKRKAIGRVFIEV-----------F 304

Query: 130 LSVTRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                Q+     LA        I S    G     +                +       
Sbjct: 305 DDEAHQVQDVKWLAQGTIYPDVIESISVKGPSATIKSHHN------------VGGLPDFM 352

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              +  PL  + K+ VR +   +GL+
Sbjct: 353 KLKVVEPLNTLFKDEVRRVGTSLGLE 378


>gi|150402069|ref|YP_001329363.1| GMP synthase subunit B [Methanococcus maripaludis C7]
 gi|166215313|sp|A6VFI6|GUAAB_METM7 RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|150033099|gb|ABR65212.1| GMP synthase, large subunit [Methanococcus maripaludis C7]
          Length = 310

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   + R ++A+SGGVDSSV A L  R  G  ++ V            RK       
Sbjct: 14  EIRKQIDNRRTIIALSGGVDSSVAAVLADRAIGDKLLAVY-----VDTGLMRKNESEEIW 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            ++      + + ++  + + ++ F      VI P       G   +             
Sbjct: 69  KIFK-----EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLFIEV----------- 112

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V  + G +VL  G      +      K    +  P  +  D               +
Sbjct: 113 FEKVAEEQGEEVLVQGTIAPDWIESEGQIKTHHNIALPGGMVLD---------------V 157

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR LA  +GL 
Sbjct: 158 VEPLRELYKDEVRLLAEALGLP 179


>gi|218888208|ref|YP_002437529.1| GMP synthase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226738437|sp|B8DNB9|GUAA_DESVM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218759162|gb|ACL10061.1| GMP synthase, large subunit [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 515

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 36/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D  VV A+SGG+DS+VVA LL +  G  +  + +                   
Sbjct: 211 EMAETVGDRHVVCALSGGIDSTVVAVLLHKAIGKRLHCIFVDN--------------GVL 256

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
            + + + V D +      FD   ++  A    F       E P       R +       
Sbjct: 257 RLNEGQEVVDYLR---EHFDLNLKYVQA-QRRFLDKLEGVEDPE----QKRKIIGYTFIE 308

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 + LG  D LA G  +   +      K    + +           +    ++   
Sbjct: 309 VFDEEAKALGHVDFLAQG-TLYPDVIESVSHKGPSAVIKSHHN-------VGGLPEKMNL 360

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR +A E+GL 
Sbjct: 361 KLIEPLRELFKDEVRKVAGELGLP 384


>gi|212224157|ref|YP_002307393.1| thiamine biosynthesis protein ThiI [Thermococcus onnurineus NA1]
 gi|212009114|gb|ACJ16496.1| Thiamine biosynthesis protein ThiI [Thermococcus onnurineus NA1]
          Length = 383

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 53/236 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V A L+ + G +VI V +                  + +   R++
Sbjct: 182 QGKVVALLSGGIDSPVAAFLMMKRGVEVIPVHI--------------YMGEKTLEKVRKI 227

Query: 80  CDTINV-------SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            + +            V   + + R  ++               CV C    KF  ++  
Sbjct: 228 WNQLRKYGYGGKGELIVV--KPKERERILQK-LKELKKEN--YTCVFC----KF-MMVRH 277

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             ++  D  A G      + +GD       + +      +  Y +   +   +     PL
Sbjct: 278 ADRIAKDFGAKG------IVMGD------SLGQVASQTLENMYIVSRASDLPIYR---PL 322

Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQ-----QGKYFDVVKRINAGIALE 242
             M KE +  +A+E+G  +++   D  +I F+      +G + +  K   A    E
Sbjct: 323 IGMDKEEIVKIAKEIGTFELSTLPD-DEIPFIPRHPVIRGSWEEFRKLYKAVFGEE 377


>gi|121712429|ref|XP_001273826.1| GMP synthase [Aspergillus clavatus NRRL 1]
 gi|119401978|gb|EAW12400.1| GMP synthase [Aspergillus clavatus NRRL 1]
          Length = 539

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 40/203 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
            V+ A+SGGVDS+V A L+K      IG      N   A      C    +    A  + 
Sbjct: 232 HVLGAVSGGVDSTVAAKLMKEA----IG------NRFHAVLVNNGCMRLNECETVAETLN 281

Query: 81  DTINVSHYVFDYEERFRN---AVIVP----------FASSYAAGETPLPCVDCNRTVKFS 127
             + ++  V D  +RF +    V  P          F   +      +     +   K  
Sbjct: 282 RHLGINLTVVDASKRFLDGLKGVTDPEKKRMFIGGTFIDVFEEEAEKIEAEAEHSGAKIK 341

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L  T             I S  + G     +         +R          + Q   
Sbjct: 342 WFLQGTL--------YPDVIESISFKGPSATIKTHHNVGALPKR--------MIEGQGMK 385

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR L RE+G+ 
Sbjct: 386 LIEPLRELFKDEVRQLGRELGIA 408


>gi|255654281|ref|ZP_05399690.1| GMP synthase [Clostridium difficile QCD-23m63]
 gi|296452570|ref|ZP_06894265.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP08]
 gi|296881018|ref|ZP_06904963.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP07]
 gi|296258593|gb|EFH05493.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP08]
 gi|296427977|gb|EFH13879.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP07]
          Length = 511

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 41/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           +L +   D + + A+SGGVDSSV A L+ +     IG  +T    +     K +G     
Sbjct: 208 ELKEKIGDKKALCALSGGVDSSVAAVLIHKA----IGDNLTCIFVDHGLLRKNEG----- 258

Query: 71  QDVYDARRVC-DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV--DCNRTV 124
               D  R+  +  +++    + E+RF +    V  P A     GE  +     + N+  
Sbjct: 259 ---NDVERIFREKFDINLIRVNAEDRFLSKLKGVSEPEAKRKIIGEEFIRVFEEESNKLG 315

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           K   L+  T  +  DV+ +GH   + +    +         P D++              
Sbjct: 316 KMDFLVQGT--IYPDVIESGHGNAATIKSHHNVGGI-----PEDVD-------------- 354

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             ++  PL ++ K+ VR +  E+G++
Sbjct: 355 FQEIVEPLRELFKDEVRKIGLELGIE 380


>gi|254973858|ref|ZP_05270330.1| GMP synthase [Clostridium difficile QCD-66c26]
 gi|255091243|ref|ZP_05320721.1| GMP synthase [Clostridium difficile CIP 107932]
 gi|255312902|ref|ZP_05354485.1| GMP synthase [Clostridium difficile QCD-76w55]
 gi|255515661|ref|ZP_05383337.1| GMP synthase [Clostridium difficile QCD-97b34]
 gi|255648755|ref|ZP_05395657.1| GMP synthase [Clostridium difficile QCD-37x79]
 gi|260681975|ref|YP_003213260.1| GMP synthase [Clostridium difficile CD196]
 gi|260685573|ref|YP_003216706.1| GMP synthase [Clostridium difficile R20291]
 gi|306518872|ref|ZP_07405219.1| GMP synthase [Clostridium difficile QCD-32g58]
 gi|260208138|emb|CBA60429.1| GMP synthase [glutamine-hydrolyzing] [Clostridium difficile CD196]
 gi|260211589|emb|CBE01801.1| GMP synthase, glutamine-hydrolyzing [Clostridium difficile R20291]
          Length = 511

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 41/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           +L +   D + + A+SGGVDSSV A L+ +     IG  +T    +     K +G     
Sbjct: 208 ELKEKIGDKKALCALSGGVDSSVAAVLIHKA----IGDNLTCIFVDHGLLRKNEG----- 258

Query: 71  QDVYDARRVC-DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV--DCNRTV 124
               D  R+  +  +++    + E+RF +    V  P A     GE  +     + N+  
Sbjct: 259 ---NDVERIFREKFDINLIRVNAEDRFLSKLKGVSEPEAKRKIIGEEFIRVFEEESNKLG 315

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           K   L+  T  +  DV+ +GH   + +    +         P D++              
Sbjct: 316 KMDFLVQGT--IYPDVIESGHGNAATIKSHHNVGGI-----PEDVD-------------- 354

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             ++  PL ++ K+ VR +  E+G++
Sbjct: 355 FQEIVEPLRELFKDEVRKIGLELGIE 380


>gi|77920359|ref|YP_358174.1| hypothetical protein Pcar_2769 [Pelobacter carbinolicus DSM 2380]
 gi|77546442|gb|ABA90004.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 325

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 46/232 (19%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGG+DS++ A  LK+ G DV G+          +   G+  A Q           I++
Sbjct: 7   LISGGLDSTLAALTLKQQGVDVTGIVF-------VTPFFGAARARQAAR-------QIDM 52

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
              V +  E   + +  P    Y  G+   PC+DC+  + F            D L +G 
Sbjct: 53  PLIVEEIGEIHLDVLKNP---RYGYGKNLNPCIDCHALM-FRLAARHIHNGEYDFLFSGE 108

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESV-RD- 202
            +  R    +    + +                    + LC    P+  M +K  V R+ 
Sbjct: 109 VLGQRPMSQNFNALQAVAKHADC---------ADIILRPLCAKLLPVTPMEEKGLVDREQ 159

Query: 203 --------------LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
                          AR+ GL   +   S   C + +  +   ++ +     
Sbjct: 160 LLDIQGRSRKRQEQYARQWGLT--EYPGSGGGCLLTEKSFTGKLRDLLDHQP 209


>gi|303241844|ref|ZP_07328339.1| GMP synthase, large subunit [Acetivibrio cellulolyticus CD2]
 gi|302590619|gb|EFL60372.1| GMP synthase, large subunit [Acetivibrio cellulolyticus CD2]
          Length = 511

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 39/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  +     +     K +G             
Sbjct: 215 DKKVLCALSGGVDSSVAAVLINKAIGKQLTCIF---VDHGLLRKYEGDQVEEVFR----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             +  +++    + E+RF +           AG T     +  R +   + + V     +
Sbjct: 267 --NQYDINLIRANVEDRFMDR---------LAGVT---DPETKRKIIGEEFIRVFEVEAK 312

Query: 135 QLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPL 192
           ++GA D L  G        V + G     + +           +          ++  PL
Sbjct: 313 KIGAVDFLVQG---TIYPDVIESGLGNAAVIKSHHN-------VGGLPDYVDFKEIIEPL 362

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+G+ 
Sbjct: 363 RNLFKDEVRRVGTELGIP 380


>gi|160947468|ref|ZP_02094635.1| hypothetical protein PEPMIC_01402 [Parvimonas micra ATCC 33270]
 gi|158446602|gb|EDP23597.1| hypothetical protein PEPMIC_01402 [Parvimonas micra ATCC 33270]
          Length = 510

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV A+LL +  G  +  V     ++    K +G         D   
Sbjct: 215 DKKVLLALSGGVDSSVCASLLSKAIGSQLTCVF---VDTGLMRKNEGDEVEEAFKND--- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                 ++    + ++RF              G T     +  R +             +
Sbjct: 269 -----ELNFVRVNAKDRFLEK---------LKGVT---DPEQKRKIIGEEFIRVFEDEAK 311

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPL 192
           ++G  D LA G        V + G     + +           +          DL  PL
Sbjct: 312 KIGQVDYLAQG---TIYPDVIESGLGDAKVIKSHHN-------VGGLPDVVDFRDLIEPL 361

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR L  E+ + 
Sbjct: 362 RDLFKDEVRRLGLELKMP 379


>gi|225374596|ref|ZP_03751817.1| hypothetical protein ROSEINA2194_00211 [Roseburia inulinivorans DSM
           16841]
 gi|225213548|gb|EEG95902.1| hypothetical protein ROSEINA2194_00211 [Roseburia inulinivorans DSM
           16841]
          Length = 538

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +   D +V++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 222 DIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKNEGDEVESV 278

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              + +      +++    + +ER+ + +                 +     ++      
Sbjct: 279 FGPNGQ-----FDLNFIRVNAQERYYSKLAGVTEPEQKRK------IIGEEFIRV--FEE 325

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLC 186
             +++GA D LA G      +  G  G+    +       +    D              
Sbjct: 326 EAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD------------FK 373

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL ++ K+ VR    E+G+ 
Sbjct: 374 EIIEPLRNLFKDEVRKAGLELGIP 397


>gi|116334330|ref|YP_795857.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus brevis ATCC 367]
 gi|116099677|gb|ABJ64826.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus brevis ATCC
           367]
          Length = 521

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 79/216 (36%), Gaps = 42/216 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           + +   L    + +   D +V++ +SGGVDSSVV  LL +     IG  L          
Sbjct: 209 MDDFIDLQIAQIRETVGDKKVLLGLSGGVDSSVVGVLLHKA----IGSQLTSIFVDHGLL 264

Query: 63  RKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGET---PL 115
           RKG          A++V D++     ++    + ++RF +           AG T     
Sbjct: 265 RKGE---------AKQVMDSLEGKFGLNIVQVNAQDRFLSK---------LAGVTEPEKK 306

Query: 116 PCVDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             +  N  ++        ++L G D LA G      +  G D  +     +         
Sbjct: 307 RKIIGNEFIQV--FNDEAQKLDGIDFLAQGTLYTDVIESGTDTAQT---IKSHHN----- 356

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +     L  PL  + K+  R+L  ++G+ 
Sbjct: 357 --VGGLPEDMHFQLIEPLRSLFKDEARELGEKLGMP 390


>gi|73990460|ref|XP_866440.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 6
           [Canis familiaris]
          Length = 690

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 37/205 (18%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 243 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 291

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +    + +        E +R             G  P    +  R +     + +  + 
Sbjct: 292 LK---KLGIQREREREAETYRQREKQAPCREPDVGLDPCEDPEEKRKIIGDTFVKIANE- 347

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSYFLFATTQQQL 185
               +     ++        G  R  +     L             + +  +    ++  
Sbjct: 348 ----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREE-- 401

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D  K+ VR L RE+GL 
Sbjct: 402 GKVIEPLKDFHKDEVRILGRELGLP 426


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040091|gb|ACT56887.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 53/206 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGV----------TL-QLYNSRKASKRKGSCC 68
           + RV+ A+SGGVDS+V A L+    Y+ IG+           + +       S  KG   
Sbjct: 222 NERVICAVSGGVDSTVAAFLI----YEAIGINLTCVLVDHGFMRKNEVENIISLFKGYP- 276

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                          N    V D  ERF      ++ P        ET    +     + 
Sbjct: 277 ---------------NFPLRVVDASERFIRKLKNIVDP--------ETKRKVIG---QLF 310

Query: 126 FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                   +++ GA  L  G      +           + +           +    +  
Sbjct: 311 IEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHN-------VGGLPEHM 363

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L +E+ L 
Sbjct: 364 DMKLVEPLKELFKDEVRLLGKELRLP 389


>gi|295705537|ref|YP_003598612.1| hypothetical protein BMD_3422 [Bacillus megaterium DSM 319]
 gi|294803196|gb|ADF40262.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 269

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 70/217 (32%), Gaps = 52/217 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           VVVA SGGVDS+    LLK      G + VI VT                    ++ +A+
Sbjct: 19  VVVAFSGGVDST---FLLKVAVETLGNENVIAVT-----------ADSETYPSSELEEAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   I V H + +  E             Y+       C  C  ++ F  L  +  +  
Sbjct: 65  VLARQIGVRHQIIETSEL--------AIPGYSE-NNKNRCYFCKSSL-FDHLKPIIEEYQ 114

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +  G          D  + R  M    +                L    F      K
Sbjct: 115 FKTIVYGAIA------DDMNEHRPGMKAAKEKG---------IRGPLLEANLF------K 153

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           + +R+L+R++ L   +K      C   +  Y + + +
Sbjct: 154 KEIRELSRQLELPTWNKPSF--ACLSSRIAYGEYITK 188


>gi|288817743|ref|YP_003432090.1| NH3-dependent NAD+ synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787142|dbj|BAI68889.1| NH3-dependent NAD+ synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751342|gb|ADO44825.1| NAD+ synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 565

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VA L     G D V+G+ +      + + ++          DA  +
Sbjct: 314 KVVLGLSGGIDSSLVACLAVDALGSDRVVGIFM----PSEFTSKESK-------EDAVSL 362

Query: 80  CDTINVSHYVFDYEERFR 97
              + +  Y F  +  F+
Sbjct: 363 AKNLGIELYQFPIDVIFK 380


>gi|288559923|ref|YP_003423409.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288542633|gb|ADC46517.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 359

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 23/125 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++ +A S G DS+++A L K    DV+ +T                     +  A+R  
Sbjct: 18  KKIALAFSAGADSTLLAYLAKESDCDVLAITYDN-----------QIFPEGFLEFAKRRA 66

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           D + + H + +            F   Y     TP  C+ C R + +  +  V  + G D
Sbjct: 67  DELGIKHEIIENS----------FLMIYDVAHNTPQRCLTC-RRLMYGSIKQVANERGYD 115

Query: 140 VLATG 144
           ++  G
Sbjct: 116 IIIDG 120


>gi|296123511|ref|YP_003631289.1| NAD+ synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015851|gb|ADG69090.1| NAD+ synthetase [Planctomyces limnophilus DSM 3776]
          Length = 554

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 17/186 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDS++VA L  R  G + V G+ L                    + DA  + +
Sbjct: 295 VLGLSGGVDSALVAYLAARALGPEHVHGLLL-----------PSRYSTDHSLEDAILLAE 343

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            + + H     +   R   ++       A + P    D N    ++ + +++ +   G  
Sbjct: 344 RLKIDHCTIPIDAVHRAYEMIAVLGEELASK-PAGLADQNLQSRIRGAIVMARSNHHGWL 402

Query: 140 VLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            LATG+     + Y    G     +    DL + + Y L     QQ      P   + K 
Sbjct: 403 ALATGNKSELAMGYCTLYGDMNGALAPLSDLYKGEVYRLCEFINQQEGKEIIPANILTKP 462

Query: 199 SVRDLA 204
              +LA
Sbjct: 463 PSAELA 468


>gi|242277963|ref|YP_002990092.1| ExsB family protein [Desulfovibrio salexigens DSM 2638]
 gi|242120857|gb|ACS78553.1| ExsB family protein [Desulfovibrio salexigens DSM 2638]
          Length = 269

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 43/192 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGGVDS+++    K            L +   A+          +  +A+   + +
Sbjct: 22  VIAFSGGVDSTLLLHTAKEA----------LGDKAIAASISTPYVPQWEQGEAKEFAEQM 71

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V H V D            F         P  C  C + + FS LL + ++   + +  
Sbjct: 72  EVKHVVVDMG----------FPEELRM-NPPEHCYTC-KNILFSKLLEIAQENDIEHVLE 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G          DD    R   + +     +S F+ A              ++ K+ +RD+
Sbjct: 120 G-------TNIDDLSDYRPGIKALRELEIRSPFVEA--------------ELTKQEIRDI 158

Query: 204 AREMGLDIADKS 215
           +R   L   +K 
Sbjct: 159 SRRFNLPTWNKP 170


>gi|297618684|ref|YP_003706789.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
 gi|297377661|gb|ADI35816.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
          Length = 250

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 50/199 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+V+ SGGVDS++VA  L ++G D + VT+      K+S           +  A +
Sbjct: 14  RGKKVIVSYSGGVDSTLVAK-LAQNGEDCVAVTIDNGFFSKSS-----------LKYAEK 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +N+ H + D  +   N  +               C +C + +    L  V  QL  
Sbjct: 62  KAKLMNLKHVIIDVNQLDENVCVE------------NRCYECKKMMA-KILNEVKDQLEF 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
           D++  G          D  + R  +                    +   +  PL      
Sbjct: 109 DIIVDG------TIYEDLSEDRPGLVA-----------------YRESGIISPLAKYKIT 145

Query: 197 KESVRDLAREMGLDIADKS 215
           K+ V + +  +GLDI  K 
Sbjct: 146 KDDVNEFSYYLGLDIPKKE 164


>gi|146303330|ref|YP_001190646.1| exsB protein [Metallosphaera sedula DSM 5348]
 gi|145701580|gb|ABP94722.1| exsB protein [Metallosphaera sedula DSM 5348]
          Length = 469

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 48/229 (20%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           V+      +L L   P+   +V+A SGG+DS+V A  + R+GY V  +    ++  +  +
Sbjct: 224 VTLNKEFRTLSLYAQPRRRALVIA-SGGLDSTVAATKMIREGYQVTLLHFNYHHKAEEKE 282

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP------- 103
           R+            R++   +N      +  + F               V          
Sbjct: 283 REA----------VRKIASYLNADLMEIN-TDLFSLIGNATLLKGGGEIVKDRKGEEGAE 331

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           FA  +               + F+  +++    G D + +G  +       D+      M
Sbjct: 332 FAHEWVPARNA---------IFFTVAMAIAEAKGYDAIVSGINLEEAGAYPDNEMEFVRM 382

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
                    Q    +A   ++  D+  P+G++ K  +  L  E+G  + 
Sbjct: 383 F--------QRLSPYAVGPEKRVDVLMPVGNLVKHEIVKLGLEIGAPLH 423


>gi|292654226|ref|YP_003534123.1| argininosuccinate synthase [Haloferax volcanii DS2]
 gi|291371754|gb|ADE03981.1| argininosuccinate synthase [Haloferax volcanii DS2]
          Length = 405

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 39/200 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V +A SGG+D++V   +L+ + GYD V+GVT+ +    +  +                
Sbjct: 2   KKVALAFSGGLDTTVCVPILEEEYGYDEVVGVTVDVGQPEEEFEEAYETAEA-------- 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + + HYV D ++ F    +    ++      PL      R V    +L +  +   
Sbjct: 54  ----LGLEHYVVDAKQEFAQLCLDSVCANADYQGYPLGTALA-RPVIAKAILELAEEQDC 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           D +A G         G+D  R   + R  DLE                 +  P+ +  M 
Sbjct: 109 DGIAHG-----CTGKGNDQLRFEAVWRASDLE-----------------VIAPVREMGMT 146

Query: 197 KESVRDLAREMGLDIADKSD 216
           +E   + A E  L +   ++
Sbjct: 147 REWEIEYAAEKDLPVQGGNE 166


>gi|326316683|ref|YP_004234355.1| GMP synthase large subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373519|gb|ADX45788.1| GMP synthase, large subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 541

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 24/193 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                     D+     V  
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---------VDHGLLRLNEGDMVMDMFVG- 279

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  E F   +             G   +  V      K +   +  ++ GA
Sbjct: 280 KLHAKVVRVDASELFLRELAGVSDPEQKRKIIGRLFV-DVFKAEAAKLTASGASKKEKGA 338

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
             LA G      +  G    ++ +  +           +     +QL   L  PL D+ K
Sbjct: 339 TFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPLRDLFK 390

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 391 DEVRELGVALGLP 403


>gi|126697769|ref|YP_001086666.1| GMP synthase [Clostridium difficile 630]
 gi|255099361|ref|ZP_05328338.1| GMP synthase [Clostridium difficile QCD-63q42]
 gi|255305194|ref|ZP_05349366.1| GMP synthase [Clostridium difficile ATCC 43255]
 gi|123067183|sp|Q18CT8|GUAA_CLOD6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115249206|emb|CAJ67019.1| Glutamine amidotransferase [Clostridium difficile]
          Length = 511

 Score = 56.3 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 41/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           +L +   D + + A+SGGVDSSV A L+ +     IG  +T    +     K +G     
Sbjct: 208 ELKEKIGDKKALCALSGGVDSSVAAVLIHKA----IGDNLTCIFVDHGLLRKNEG----- 258

Query: 71  QDVYDARRVC-DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV--DCNRTV 124
               D  R+  +  +++    + E+RF +    V  P A     GE  +     + N+  
Sbjct: 259 ---NDVERIFREKFDINLIRVNAEDRFLSKLKGVSEPEAKRKIIGEEFIRVFEEESNKLG 315

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           K   L+  T  +  DV+ +GH   + +    +         P D++              
Sbjct: 316 KMDFLVQGT--IYPDVIESGHGNAATIKSHHNVGGI-----PEDVD-------------- 354

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             ++  PL ++ K+ VR +  E+G++
Sbjct: 355 FQEIVEPLRELFKDEVRKIGLELGIE 380


>gi|306819683|ref|ZP_07453344.1| GMP synthase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552249|gb|EFM40179.1| GMP synthase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 509

 Score = 56.3 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 32/201 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSVVAA++ +  G ++  +     +     K +G      
Sbjct: 207 EVRQRVGDKKVLLALSGGVDSSVVAAVISKAIGSNLTCIF---VDHGLMRKNEGD----- 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              +         ++    + ++RF   +                 +     ++      
Sbjct: 259 ---EVEAAFKNSGMNFIRVNAQDRFLGKLAGVSEPEQKRK------IIGEEFIRV--FEE 307

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLR 189
             +++G  D LA G        V + GK    + +           +          ++ 
Sbjct: 308 EAKKIGKVDFLAQG---TIYADVVESGKGDAAVIKSHHN-------VGGLPDYVDFKEII 357

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR L  E+GL 
Sbjct: 358 EPLRDLFKDEVRRLGLELGLP 378


>gi|302388749|ref|YP_003824570.1| argininosuccinate synthase [Thermosediminibacter oceani DSM 16646]
 gi|302199377|gb|ADL06947.1| argininosuccinate synthase [Thermosediminibacter oceani DSM 16646]
          Length = 403

 Score = 56.3 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV    LK + Y  DV+ +                   G+D+   + 
Sbjct: 2   KKVVLAYSGGLDTSVAIKWLKEN-YNCDVVAL-------------CADLGEGKDLEFIKN 47

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             + +  +  YV D +E F          + A  E   P     +R +    L+ V R+ 
Sbjct: 48  KAERVGAIKCYVVDAKEEFIKNYAFFALKANALYEGVYPLSAALSRPLISKLLVDVARRE 107

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 108 GAFAVAHG 115


>gi|297587563|ref|ZP_06946207.1| PP-loop family protein [Finegoldia magna ATCC 53516]
 gi|297574252|gb|EFH92972.1| PP-loop family protein [Finegoldia magna ATCC 53516]
          Length = 275

 Score = 56.3 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 19/126 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++ V MSGG DS ++A L +    +   G  +  ++    +   G   + +++   +   
Sbjct: 39  KIAVCMSGGKDSLLLAKLFQELQKH---G--MNNFDLEFIAMNPGY--SEENIRLEKENF 91

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N+ ++++D        V     S   +     PC  C   ++   L S  ++LG + 
Sbjct: 92  EKLNIPYHMYD------TDVFS--VSEKISSN--NPCYMC-ARMRRGALYSKAKELGCNK 140

Query: 141 LATGHY 146
           +A GH+
Sbjct: 141 MALGHH 146


>gi|196230394|ref|ZP_03129256.1| ExsB family protein [Chthoniobacter flavus Ellin428]
 gi|196225324|gb|EDY19832.1| ExsB family protein [Chthoniobacter flavus Ellin428]
          Length = 265

 Score = 56.3 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 62/204 (30%), Gaps = 65/204 (31%)

Query: 24  VVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V+A SGGVDS   A LL       G  V+GV   + +S    ++  +             
Sbjct: 19  VIAYSGGVDS---AYLLAEAHKTLGSQVLGV---IADSASLPRQALADALALA------- 65

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-----TVK---FSDLLS 131
            + I V   V                     GE   P    N        K   F++L +
Sbjct: 66  -EQIGVRVEVV------------------KTGELDNPDYASNPPNRCYFCKAELFTNLDA 106

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +    G   +A G          DD K  R   +           L       L      
Sbjct: 107 LAHNRGFRAIAYGENA-------DDMKHERPGRKAATEF----AVLAPLRDAGLA----- 150

Query: 192 LGDMKKESVRDLAREMGLDIADKS 215
                K  +R+L+RE+GL  AD  
Sbjct: 151 -----KAEIRELSRELGLPTADAP 169


>gi|154317352|ref|XP_001557996.1| hypothetical protein BC1G_03578 [Botryotinia fuckeliana B05.10]
 gi|150844995|gb|EDN20188.1| hypothetical protein BC1G_03578 [Botryotinia fuckeliana B05.10]
          Length = 543

 Score = 56.3 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 42/208 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+       IG      +   A           +    R+
Sbjct: 231 EKGQVLGAVSGGVDSTVAAKLMHEA----IG------DRFHAVLVNNGVMRLNECEQVRK 280

Query: 79  -VCDTINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCN--R 122
            + + + ++  V D  E F            +   I   F   + A    +     N  +
Sbjct: 281 TLTENLGINLIVADASEDFLDGLAGLDEPEAKRKFIGGKFIDVFEAEAKKIEDAAANSDK 340

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             K    L  T             I S  + G     +         +R         T+
Sbjct: 341 AGKIEFFLQGTL--------YPDVIESISFKGPSATIKTHHNVGGLPKR--------MTE 384

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
            Q   L  PL ++ K+ VR L RE+G+ 
Sbjct: 385 GQGLKLIEPLRELFKDEVRQLGRELGIA 412


>gi|154251830|ref|YP_001412654.1| argininosuccinate synthase [Parvibaculum lavamentivorans DS-1]
 gi|171769581|sp|A7HSW4|ASSY_PARL1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|154155780|gb|ABS62997.1| Argininosuccinate synthase [Parvibaculum lavamentivorans DS-1]
          Length = 410

 Score = 56.3 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 14  LDKNPKD-MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +    KD  +VV+A SGG+D+SV+   L+   G +V+  T                  G+
Sbjct: 1   MSGATKDVKKVVLAYSGGLDTSVILKWLQETYGCEVVTFT-------------ADLGQGE 47

Query: 72  DVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRT 123
           ++  AR+  + + V   Y+ D  E F    + P   +       Y  G +    +   R 
Sbjct: 48  ELEPARKKAEMLGVKEIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLIAKRQ 107

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +       + RQ GAD +  G
Sbjct: 108 I------EIARQTGADAVCHG 122


>gi|317507383|ref|ZP_07965118.1| arginosuccinate synthase [Segniliparus rugosus ATCC BAA-974]
 gi|316254331|gb|EFV13666.1| arginosuccinate synthase [Segniliparus rugosus ATCC BAA-974]
          Length = 401

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 67/202 (33%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + +  G +V+ V                   G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGQETGLEVVAV------------AVDVGQGGEDLGVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F      P  ++ A      P V   +R +    L++V RQ G 
Sbjct: 52  LDCGAVEAVVIDARDEFAEQYCQPVVAANALYMDRYPLVSAISRPLIAKHLVAVARQHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM-- 195
            ++A G                   C       DQ  F    T          P+ D   
Sbjct: 112 TIVAHG-------------------CTGK--GNDQVRFECGITALAPELTVLAPVRDYAW 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            +E     A E  L IA    S
Sbjct: 151 TREKAIAFAEERKLPIAASKKS 172


>gi|291277585|ref|YP_003517357.1| argininosuccinate synthase [Helicobacter mustelae 12198]
 gi|290964779|emb|CBG40635.1| argininosuccinate synthase [Helicobacter mustelae 12198]
          Length = 401

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L  + G +V+  T                  G++V  AR  
Sbjct: 3   KKVVLAYSGGLDTSVILKWLGENYGCEVVTFT-------------ADIGQGEEVAPAREK 49

Query: 80  CDTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
              + +      + D  E F    + P           Y  G          R +    L
Sbjct: 50  AKKLGIKEENIFILDLREEFIRDFVFPMFRANAVYEGEYLLG------TSIARPLIAKHL 103

Query: 130 LSVTRQLGADVLATG 144
           + + + +GAD +A G
Sbjct: 104 VEIAKAVGADAIAHG 118


>gi|209694327|ref|YP_002262255.1| GMP synthase [Aliivibrio salmonicida LFI1238]
 gi|226738377|sp|B6EGZ6|GUAA_ALISL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|208008278|emb|CAQ78423.1| GMP synthase [glutamine-hydrolyzing] [Aliivibrio salmonicida
           LFI1238]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVA L  R  G  +  V +                    + +A +
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDN--------------GLLRLNEAEQ 264

Query: 79  VCDTI--NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           V +         +   E          F S+ +    P         V        +++L
Sbjct: 265 VMEMFSEGFGLKIIHVEAE------ERFLSALSGESDPEAKRKIIGHVFVDIFDEESKKL 318

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +  + +           +          L  PL ++
Sbjct: 319 SNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPLREL 371

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 372 FKDEVRKIGLELGLP 386


>gi|78044681|ref|YP_359926.1| hypothetical protein CHY_1080 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996796|gb|ABB15695.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 332

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 35/229 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R +   SGG+DS +   + +R G DV  +                  +       +  
Sbjct: 2   NNRALALFSGGLDSILAIKVSQRAGADVTALHFINPF-----------VSEVKTEYIKEK 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--- 136
              + V   +    + +   ++ P    Y  G+   PC+DC        +L   ++L   
Sbjct: 51  AKELGVPLILEPLGDDYLEIILKP---KYGYGKAMNPCIDCRAF-----MLKKAKELLPK 102

Query: 137 -GADVLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             A  L +G  +  R              +     I+ RP+  +                
Sbjct: 103 YNASFLISGEVLGQRPKSQMRHSMQQTAREAGVEDILVRPLTAKNLPPTLPERLGIIDRE 162

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
            L    G  +K  +  LARE+G+           C + Q +Y   +K +
Sbjct: 163 KLLDFSGRNRKPQM-ALARELGIQNYPSP--AGGCLLTQVEYGKKLKDL 208


>gi|20094941|ref|NP_614788.1| ATPase [Methanopyrus kandleri AV19]
 gi|19888183|gb|AAM02718.1| Predicted ATPase of the PP-loop superfamily [Methanopyrus kandleri
           AV19]
          Length = 265

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + P+DMR+ VA SGG DS+  A +L++ GY+V  VT                   +   +
Sbjct: 62  EEPRDMRITVAASGGYDSTASAIILRKLGYEVESVT---------VDPGPMFLPPKLRRN 112

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              + + +        + E   + V+    +    G    PC  CN  ++   +      
Sbjct: 113 VEILSEYLGTEPK---FVEEDLSDVVEGALNE---GR-FHPCGRCNAKIRKRVMGEA--- 162

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
              DV+A G  + +  +       R  +  P  L +
Sbjct: 163 -DTDVVAFGDGLPTGHHCVQPEDDRFKLHVPAALAK 197


>gi|255716424|ref|XP_002554493.1| KLTH0F06644p [Lachancea thermotolerans]
 gi|238935876|emb|CAR24056.1| KLTH0F06644p [Lachancea thermotolerans]
          Length = 418

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+S++ A L  +GY+V+   +                  +D   A +
Sbjct: 2   SKGKVCLAYSGGLDTSIILAWLLEEGYEVVA-FMAN------------VGQEEDFDAAEK 48

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I  + YV  D  E F   V+ P           Y  G +    V     +      
Sbjct: 49  KAMAIGATKYVCVDCREDFVKDVLFPAVQVNAVYEDVYLMGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V    G   +A G
Sbjct: 103 DVAEAEGCFAVAHG 116


>gi|254506805|ref|ZP_05118945.1| GMP synthase [Vibrio parahaemolyticus 16]
 gi|219550386|gb|EED27371.1| GMP synthase [Vibrio parahaemolyticus 16]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEERF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|301063542|ref|ZP_07204068.1| protein ExsB [delta proteobacterium NaphS2]
 gi|300442351|gb|EFK06590.1| protein ExsB [delta proteobacterium NaphS2]
          Length = 228

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV +SGG+DS+ VAA+   +GYDV  +T +                  ++  A +V  
Sbjct: 7  KAVVLLSGGLDSTTVAAIACSEGYDVFALTFRY-----------GQRHAVELKAAEKVAH 55

Query: 82 TINV-SHYVFDY 92
           + +  H + D 
Sbjct: 56 NLGLTEHLIVDL 67


>gi|291458778|ref|ZP_06598168.1| GMP synthase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418695|gb|EFE92414.1| GMP synthase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 513

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
             +V++A+SGGVDSSV A LL +  G  +  V      L+ Y   +     GS       
Sbjct: 215 GGKVLLALSGGVDSSVAATLLSKAIGRQLSCVFVDHGLLRKYEGDEVEAVFGSTG----- 269

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                     +++    +    +               E     +   R ++        
Sbjct: 270 --------KYDLNFIRVNAGPLYLEK-----LKGVEEPEQKRRIIGE-RFIRI--FEQEA 313

Query: 134 RQLGA-DVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +++GA D LA G  Y         +G   +       L ++           +   +  P
Sbjct: 314 KKIGAVDFLAQGTIYADVVESGLGNGAVIKSHHNVGGLPKN----------IEFRGIIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR +  E+GL 
Sbjct: 364 LRDLFKDEVRRVGLELGLP 382


>gi|27363886|ref|NP_759414.1| GMP synthase [Vibrio vulnificus CMCP6]
 gi|31340140|sp|Q8DF07|GUAA_VIBVU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|27360003|gb|AAO08941.1| GMP synthase (glutamine-hydrolyzing) [Vibrio vulnificus CMCP6]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|323346643|gb|EGA80928.1| Arg1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 420

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V    +                  +D   A+ 
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLDQGYEVXA-FMAN------------VGQEEDFDAAKE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I        D  E F   ++ P           Y  G +    V     +      
Sbjct: 49  KALKIGACKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 103 DVAKQEGCFAVSHG 116


>gi|315638963|ref|ZP_07894134.1| GMP synthase [Campylobacter upsaliensis JV21]
 gi|315480992|gb|EFU71625.1| GMP synthase [Campylobacter upsaliensis JV21]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 72/205 (35%), Gaps = 39/205 (19%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +K     +V+ A+SGGVDSSVVA LL R  G ++I V            RKG   A + +
Sbjct: 212 EKVSNGGKVLCAVSGGVDSSVVATLLYRAIGENLIPVF-----VDTGLLRKGEREAVEAM 266

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDC-----NRTVK 125
           +      + + V   V D +E F   +             GET +   +      N   +
Sbjct: 267 FR-----ENLKVPLIVADAKELFLGRLKGVTEPEQKRKIIGETFIEVFEAEAKKHNTKGE 321

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L        A        I S    G     +                +    +   
Sbjct: 322 IKFL--------AQGTLYPDVIESVSVKGPSKTIKSHHN------------VGGLPEWMK 361

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL ++ K+ VR L RE+G+ 
Sbjct: 362 FELIEPLRELFKDEVRALGRELGMP 386


>gi|183599368|ref|ZP_02960861.1| hypothetical protein PROSTU_02837 [Providencia stuartii ATCC 25827]
 gi|188021606|gb|EDU59646.1| hypothetical protein PROSTU_02837 [Providencia stuartii ATCC 25827]
          Length = 525

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 66/204 (32%), Gaps = 37/204 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D  V++A+SGGVDSSV A LL R  G  +  V +                    
Sbjct: 221 LKEQIGDDHVILALSGGVDSSVTALLLNRAIGKRLTCVFVDN--------------GLLR 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFS 127
           + +A +V +          +  +F   +I       F S+ A    P         V   
Sbjct: 267 LNEADQVMEM---------FAGKFDLNIIHVKAEDRFLSALAGIHDPEAKRKAIGHVFID 317

Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  +Q     LA G      +        +  + +           +    +    
Sbjct: 318 VFDEEASKQTQVKWLAQGTIYPDIIESAASATGKAHVIKSHHN-------VGGLPEDMKL 370

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR +  E+GL 
Sbjct: 371 GLVEPLKELFKDEVRKIGLELGLP 394


>gi|94987032|ref|YP_594965.1| GMP synthase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731281|emb|CAJ54644.1| GMP synthase-Glutamine amidotransferase domain [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 513

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            K   D  VV A+SGGVDS+VVA +L +     IG  L          R+G     + + 
Sbjct: 211 QKTIGDGNVVCALSGGVDSTVVALILNQA----IGKRLHCIFVDNGLLREGE--KDEVIS 264

Query: 75  DARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             R   +  +++      ++RF      +  P       G T                  
Sbjct: 265 YLR---EHFDLNLIFVQAQDRFLKQLEGIQDPEEKRKIIGHTF-----------IDVFDE 310

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             R +G  D LA G  + S +      +   ++ +           +    ++    L  
Sbjct: 311 EARAIGKVDFLAQG-TLYSDIIESIPHRGSSVVIKSHHN-------VGGLPEKMSLKLIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +A E+GL 
Sbjct: 363 PLKELFKDEVRKVAVELGLP 382


>gi|90421099|ref|ZP_01229001.1| argininosuccinate synthase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334591|gb|EAS48371.1| argininosuccinate synthase [Aurantimonas manganoxydans SI85-9A1]
          Length = 406

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTEYGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E T L      R +    L+ + R+ G
Sbjct: 55  AEMMGIKEIYIEDVREEFCRDFVFPMFRANAVYEGTYLLGTSIARPLISKRLVEIARETG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|327401180|ref|YP_004342019.1| hypothetical protein Arcve_1298 [Archaeoglobus veneficus SNP6]
 gi|327316688|gb|AEA47304.1| protein of unknown function UPF0021 [Archaeoglobus veneficus SNP6]
          Length = 307

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 30/139 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL---QLYNSRKAS-------KRKGSCC 68
              ++ +A+SGG DS              + +T    +LY  RK                
Sbjct: 46  SGDKIAIALSGGKDS--------------VALTFALDRLYGERKDVEFVAITIDEGIKGY 91

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
               V  AR +   + + H++  ++E F  A                PC  C    K+  
Sbjct: 92  RPPTVEIAREITSQLGIEHHIVSFKENFGMA-----LDEMVKLGDKKPCTYCGVFRKY-L 145

Query: 129 LLSVTRQLGADVLATGHYI 147
           L    R+LGA  LAT H +
Sbjct: 146 LNRTARELGATKLATAHNL 164


>gi|296135887|ref|YP_003643129.1| NAD+ synthetase [Thiomonas intermedia K12]
 gi|295796009|gb|ADG30799.1| NAD+ synthetase [Thiomonas intermedia K12]
          Length = 332

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 80/239 (33%), Gaps = 55/239 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDSSV AAL  R  G   V G+ +     R +S    S            V 
Sbjct: 38  VVLGLSGGVDSSVCAALAVRALGPQRVFGLLM---PERDSSDSSASLGGL--------VA 86

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--GA 138
             + + + V +                Y   +  +  V      ++   L+++  L  G 
Sbjct: 87  QQLGIEYTVENIAPALE------AIGCYRWRDEAVRAVLPGYNAQWKIKLAISGGLAGGI 140

Query: 139 DVL--------------------------ATGHYIRSR---LYVGDDGKRRRIMCRPMDL 169
           +                            AT H  R R    Y   D     ++  P  L
Sbjct: 141 NHFKIIAQAPDGQMHEARLPLREYLQIVAATNHKQRLRKTLEYFHADRLNYAVIGTPNRL 200

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD--IADKSDSQDICFVQQG 226
           E DQ +F+             P+  + K  V  LAR +GL   + + + + D   + QG
Sbjct: 201 EYDQGFFVKNGDG---SADLKPIAHLYKTQVYALARHLGLPDAVCNAAPTTDTYSLPQG 256


>gi|149190080|ref|ZP_01868357.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio shilonii AK1]
 gi|148836110|gb|EDL53070.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio shilonii AK1]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF         ++      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LTALEGQSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|331082801|ref|ZP_08331923.1| GMP synthase 2 [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400130|gb|EGG79779.1| GMP synthase 2 [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 430

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 36/202 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D +V++A+SGGVDSSVVAA+L +  G  ++ V +  +   + ++ +      +D
Sbjct: 129 IRKQVGDKKVLLALSGGVDSSVVAAMLIKAIGQQLVCVHV-NHGLMRKNESESVVKIFRD 187

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
                     ++ +    D  ERF      V  P              +     ++    
Sbjct: 188 ---------ELHANLIYVDATERFLGKLENVADP--EEKRK-------IIGGEFIRV--F 227

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R+L G D L  G        + + G +     +           +    +    +L
Sbjct: 228 EEEARKLEGIDFLGQG---TIYPDIIESGTKTAKCVKSHHN-------VGGLPEDLQFEL 277

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR    E+GL 
Sbjct: 278 VEPLKQLFKDEVRACGIELGLP 299


>gi|260655018|ref|ZP_05860506.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1]
 gi|260630333|gb|EEX48527.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1]
          Length = 281

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 31/192 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYDARR 78
           R+ V +SGG DSS++   L           ++ ++  K +             D      
Sbjct: 37  RIAVGLSGGKDSSLLLYAL---------ACMKRWSPVKFTLQALTVDMTDGNWDTRPMAA 87

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD ++V + V  +          P  S+        PC  C   ++   L    RQLG 
Sbjct: 88  LCDMLDVPYQVVTF----------PVVSAIEGRNERSPCSFC-ANIRRGILDGTARQLGC 136

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A GH++   +        R    R       Q        + Q+  +  PL  + + 
Sbjct: 137 NSVALGHHLDDTVETVLMNLFRGGRFRAYLPRLYQ-------DRSQV-WVIRPLVYLTER 188

Query: 199 SVRDLAREMGLD 210
            VR     +GL 
Sbjct: 189 QVRLENERLGLT 200


>gi|168185941|ref|ZP_02620576.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str.
           Eklund]
 gi|169296152|gb|EDS78285.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str.
           Eklund]
          Length = 239

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   KR     ++++ +TL              
Sbjct: 14  DFDLIQSGDKIAVGLSGGKDSITLLYLLNAYKRFSPQPFELLAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             AG D  +  R+C  ++V +Y+  ++ R +  V      S        PC  C   ++ 
Sbjct: 61  PGAGADFTEMIRICKELSVPYYL--FKTRIKEIVFDIRKES-------NPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L    ++LG + +A GH+    +  
Sbjct: 111 GSLNDHAKKLGCNKVALGHHKNDAIET 137


>gi|86158770|ref|YP_465555.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775281|gb|ABC82118.1| GMP synthase (glutamine-hydrolyzing) [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 518

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 24/194 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD  V+ A+SGGVDS+V A L+ R     IG  L+         R G     +DV+ A  
Sbjct: 216 KDGHVICALSGGVDSAVAALLVHRA----IGDRLRCIFVDNGVLRAGERKQVEDVFGAM- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                ++     D   RF  A          AG T     +  R +   + ++V  Q   
Sbjct: 271 ----FHLPLVTVDASRRFLGA---------LAGVT---DPERKRKIIGHEFIAVFEQEVE 314

Query: 139 DVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            + A G   R   +  +  D         P    +   + +    ++    L  PL ++ 
Sbjct: 315 RLAAHGARARFLVQGTLYPDVIESVSFRGPSATIKSH-HNVGGLPEKMNLALVEPLRELF 373

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  E+GL 
Sbjct: 374 KDEVRELGLELGLP 387


>gi|29347003|ref|NP_810506.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|61216643|sp|Q8A7D1|TILS_BACTN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29338901|gb|AAO76700.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 426

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++VA+SGG DS V     L   GY         +   + S R        D    R+
Sbjct: 19  DDKLLVALSGGADS-VALLRVLHTAGYQCEAAHCNFHLRGEESNR--------DERFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  ++ D+                 + E         R ++++    +  + GA
Sbjct: 70  LCQKYGIRLHITDFNTT------QYATEKRISIE------MAARELRYNWFEKIKEECGA 117

Query: 139 DVLATGHY 146
            V+A  H+
Sbjct: 118 HVIAVAHH 125


>gi|14520469|ref|NP_125944.1| hypothetical protein PAB0172 [Pyrococcus abyssi GE5]
 gi|5457684|emb|CAB49175.1| Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Pyrococcus abyssi GE5]
          Length = 210

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 45/223 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRV    SGG DSS+ A +L + GY+V  + +  +                +   AR   
Sbjct: 3   MRVYHLFSGGKDSSLAAWILSKLGYEVT-LVMVTF------------GVLDNWKYARETA 49

Query: 81  DTINVSHYVFDY-EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +   H V +       NAV                C++  R  +    +    ++  +
Sbjct: 50  KILGFEHEVVELPRNILENAV--------------NMCLEDGRPTR---AIQYIHEMALE 92

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A+    R  +    DG RR      +D+ + +S       +  +  +R  LG   K  
Sbjct: 93  YIAS----REDVERISDGTRRDDKVPFLDIRKARSLE----DRFNVAYIRPLLGLGYKT- 143

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
           +R+L  ++   I ++ +S+ I   ++G Y   ++ +     ++
Sbjct: 144 IRELVNKIF--IVEERESEKI---EKGDYEVELRYMLKLKGVD 181


>gi|37678960|ref|NP_933569.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio vulnificus YJ016]
 gi|320157264|ref|YP_004189643.1| GMP synthase [Vibrio vulnificus MO6-24/O]
 gi|44887991|sp|Q7MNE1|GUAA_VIBVY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|37197702|dbj|BAC93540.1| GMP synthase [Vibrio vulnificus YJ016]
 gi|319932576|gb|ADV87440.1| GMP synthase (glutamine-hydrolyzing) [Vibrio vulnificus MO6-24/O]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|14601833|ref|NP_148374.1| hypothetical protein APE_2086 [Aeropyrum pernix K1]
 gi|5105785|dbj|BAA81097.1| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 331

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 21/134 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  RV+ A+SGG DSS + A+L    +R G+ V+ + + L          G     +   
Sbjct: 47  KGDRVLAAVSGGKDSSTLLAVLSRLSRRIGFHVVALYIHL----------GIYEYSEKSR 96

Query: 75  DAR-RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +A  R+   ++V   VFD      N V+       A      PC  C   VK   + +  
Sbjct: 97  EASIRLASQLDVPLIVFDL-----NEVLGAGIPELAKASKRPPCSVCGM-VKRYVINAAA 150

Query: 134 RQLGADVLATGHYI 147
            +LG D +A GH  
Sbjct: 151 VELGVDAVALGHNA 164


>gi|308189600|ref|YP_003922531.1| NAD(+) synthase (glutamine-hydrolyzing) [Mycoplasma fermentans JER]
 gi|307624342|gb|ADN68647.1| NAD(+) synthase (glutamine-hydrolyzing) [Mycoplasma fermentans JER]
          Length = 264

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 43/189 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ +SGG+DS+VV AL K+  G +V+GV +                   D+ D + +  
Sbjct: 45  IVLGISGGIDSAVVVALAKKAFGKNVLGVVM------------PVDSMQNDLKDIKELEK 92

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++     D +  +    I     S             N   +    +        + L
Sbjct: 93  AVDLKFITIDLKNTYDT--IKQALPSIN-----NNLALSNIKPRLRMAVLYALAQENNYL 145

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG   +   ++G   K         D   D                  PL  + K  V+
Sbjct: 146 VTGTGNKCETHIGYFTKY-------GDGGSD----------------ILPLSKLLKSEVK 182

Query: 202 DLAREMGLD 210
            +A+ + + 
Sbjct: 183 IIAKHLKVP 191


>gi|148980239|ref|ZP_01815947.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrionales bacterium SWAT-3]
 gi|145961333|gb|EDK26642.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrionales bacterium SWAT-3]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L  R  G  +  V      L+L  + +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLAHRAIGDKLTCVFVDNGLLRLNEADQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +   ++    D E+RF          +      P         V        +
Sbjct: 271 -------NKFGLNIIKVDAEDRF--------LKALEGEAEPEAKRKIIGHVFVDIFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|260587030|ref|ZP_05852943.1| GMP synthase domain protein [Blautia hansenii DSM 20583]
 gi|260542520|gb|EEX23089.1| GMP synthase domain protein [Blautia hansenii DSM 20583]
          Length = 430

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 36/202 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D +V++A+SGGVDSSVVAA+L +  G  ++ V +  +   + ++ +      +D
Sbjct: 129 IRKQVGDKKVLLALSGGVDSSVVAAMLIKAIGQQLVCVHV-NHGLMRKNESESVVKIFRD 187

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
                     ++ +    D  ERF      V  P              +     ++    
Sbjct: 188 ---------ELHANLIYVDATERFLGKLENVADP--EEKRK-------IIGGEFIRV--F 227

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               R+L G D L  G        + + G +     +           +    +    +L
Sbjct: 228 EEEARKLEGIDFLGQG---TIYPDIIESGTKTAKCVKSHHN-------VGGLPEDLQFEL 277

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR    E+GL 
Sbjct: 278 VEPLKQLFKDEVRACGIELGLP 299


>gi|172036294|ref|YP_001802795.1| transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697748|gb|ACB50729.1| transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 233

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+  AA+    GY+VI ++L+                 +++  A+ +  T+
Sbjct: 8  VVLLSGGLDSATSAAIAIDQGYEVIALSLRY-----------GQRHQRELDAAKIIAQTL 56

Query: 84 NV-SHYVFD 91
          N+  HY  D
Sbjct: 57 NITQHYTID 65


>gi|224283258|ref|ZP_03646580.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287618|ref|YP_003938876.1| Argininosuccinate synthase [Bifidobacterium bifidum S17]
 gi|311064530|ref|YP_003971255.1| argininosuccinate synthase ArgG [Bifidobacterium bifidum PRL2010]
 gi|313140405|ref|ZP_07802598.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251554|gb|ADO53302.1| Argininosuccinate synthase [Bifidobacterium bifidum S17]
 gi|310866849|gb|ADP36218.1| ArgG Argininosuccinate synthase [Bifidobacterium bifidum PRL2010]
 gi|313132915|gb|EFR50532.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 412

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 37/203 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R+V+A SGG+D+SV    LK   G DV+ V+L +    ++ +   +        +A  
Sbjct: 4   NNRIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGESLETIKNRALACGAVEA-- 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                    YV D    F N   +    + A  E   P V   +R +    L+    Q G
Sbjct: 62  ---------YVVDARNEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMK 196
           AD ++ G                   C       DQ  F  + +          P+ D+ 
Sbjct: 113 ADTISHG-------------------CTGK--GNDQVRFEVSISSIDPTLRAISPIRDLS 151

Query: 197 KESVRDL--AREMGLDIADKSDS 217
                ++  A+E  L I     S
Sbjct: 152 LTRDVEIAFAKEHKLPITQTEKS 174


>gi|157415081|ref|YP_001482337.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|189030351|sp|A8FLM3|NADE_CAMJ8 RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|157386045|gb|ABV52360.1| NAD+ synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747723|gb|ADN90993.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932509|gb|EFV11446.1| NH(3)-dependent NAD(+) synthetase [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 246

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 43/196 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN +   VV+ +SGG+DS++VA L KR    +V  + +                   ++ 
Sbjct: 19  KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLM-----------PTQISNKANLE 67

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           DA R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   + 
Sbjct: 68  DALRLCADLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRMSLLYDYS- 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                       +++ L +G   K   ++              + T    L     P+G 
Sbjct: 121 -----------ALKNSLVIGTSNKSELLL-------------GYGTIYGDLACAFNPIGS 156

Query: 195 MKKESVRDLAREMGLD 210
           + K  +  LA+ + L 
Sbjct: 157 LYKSEIYTLAKYLNLH 172


>gi|307354521|ref|YP_003895572.1| GMP synthase large subunit [Methanoplanus petrolearius DSM 11571]
 gi|307157754|gb|ADN37134.1| GMP synthase, large subunit [Methanoplanus petrolearius DSM 11571]
          Length = 305

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 43/203 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +     +VV+A+SGGVDSSV A L +R  G ++I +            RKG     +
Sbjct: 14  EIREKSHGKKVVMALSGGVDSSVCAELARRAIGENLISIY-----VDTGLMRKGETERIR 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF-S 127
           +++         +++  V +  E F  A   VI P       GE            KF  
Sbjct: 69  ELFS--------DLNLQVVEAGEEFFEALKGVIDPEEKRKVIGE------------KFIR 108

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 ++  A  L  G        +  +G  +                 +    + L  
Sbjct: 109 IFEREAKKTKAAYLLQG--TIYPDIIESEGGIKSHHNVGGLP--------YDIDFEGL-- 156

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
              PL D+ K+ VRD+A  +GL 
Sbjct: 157 -IEPLIDLYKDEVRDVAGALGLP 178


>gi|291446385|ref|ZP_06585775.1| argininosuccinate synthase [Streptomyces roseosporus NRRL 15998]
 gi|291349332|gb|EFE76236.1| argininosuccinate synthase [Streptomyces roseosporus NRRL 15998]
          Length = 411

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRK 59
           +++   ++L  LD D+      VV   SGG+DSS +   L+R G  +V  V++ +     
Sbjct: 13  LLIRSFSQLEELDPDRP-----VVTLFSGGLDSSYLLLRLRRMGMREVHAVSVDIGEDES 67

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA--AGETPLPC 117
           +S +             ++V + +  + ++ D  E F    + P  ++ A   G  P+  
Sbjct: 68  SSYK-------------QQVAEELGATIHILDRREEFAERYVAPAIAAQAVYLGIHPVSS 114

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
                 +  S  + + R LGA  +   H                 + R
Sbjct: 115 TLSRPLIAHSA-VELARGLGAQAVL--HTANRSQNTLRRLNGALRLLR 159


>gi|224541157|ref|ZP_03681696.1| hypothetical protein CATMIT_00310 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525908|gb|EEF95013.1| hypothetical protein CATMIT_00310 [Catenibacterium mitsuokai DSM
           15897]
          Length = 266

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 76/207 (36%), Gaps = 62/207 (29%)

Query: 23  VVVAMSGGVDSSVVAALLK------RDGY-DVIGVTLQ--LYNSRKASKRKGSCCAGQDV 73
           V++A SGGVDS+    LLK      +  +  V  VT+Q  L+   +A +           
Sbjct: 15  VMIAFSGGVDST---LLLKMAVEASKKYHTHVYAVTIQTALHPVMEADE----------- 60

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLL 130
             A+R+ + +   H V   +E               AG    P   C  C + + F+ + 
Sbjct: 61  --AKRIAEELGAIHKVIHVDELE------------GAGIENNPVDRCYLCKKYM-FTKVK 105

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +   LG   +  G          DD K+ R   + +      S  L A           
Sbjct: 106 ELAHSLGISTILEGTNA-------DDLKQYRPGIKAIKELGLHSPLLEA----------- 147

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDS 217
              +M K+ +R+LA   GL  A+K  S
Sbjct: 148 ---NMTKKEIRELAATYGLKAANKPSS 171


>gi|217034343|ref|ZP_03439759.1| hypothetical protein HP9810_491g36 [Helicobacter pylori 98-10]
 gi|216943228|gb|EEC22695.1| hypothetical protein HP9810_491g36 [Helicobacter pylori 98-10]
          Length = 508

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 40/206 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +               
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEV-----------FE 301

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF------LFATTQQQ 184
              ++         H+++ ++     G     +   +   +  S        +    +  
Sbjct: 302 KEAKK---------HHLKGKIEFLSQGTLYPDVIESV-SVKGPSKVIKTHHNVGGLPEWM 351

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L +E+G+ 
Sbjct: 352 DFKLIEPLRELFKDEVRLLGKELGIS 377


>gi|52550452|gb|AAU84301.1| argininosuccinate synthase [uncultured archaeon GZfos9D1]
          Length = 388

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 71/191 (37%), Gaps = 34/191 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   LLK   GYD VI VT                    D+ +A+ 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLLKEHYGYDNVIAVT------------VDVGQPEDDIKEAKE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  S+   D +E F    I P   +    E  +      R +    ++ V R+  A
Sbjct: 50  RGAKLCDSYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREENA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A G         G+D  R   + R  DL+            ++L         + + 
Sbjct: 110 DAVAHG-----CTGKGNDQLRFDAVFRTTDLD-------VVAPMRELS--------LTRA 149

Query: 199 SVRDLAREMGL 209
             R  A E G+
Sbjct: 150 EERKYAAEHGI 160


>gi|260437103|ref|ZP_05790919.1| ExsB family protein [Butyrivibrio crossotus DSM 2876]
 gi|292810415|gb|EFF69620.1| ExsB family protein [Butyrivibrio crossotus DSM 2876]
          Length = 242

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 28/131 (21%)

Query: 22  RVVVAMSGGVDSS---VVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ + +SGG DS       A L+R     Y+++ +T++L                 D   
Sbjct: 25  KIAIGISGGKDSLTLLYALAGLRRFYPKKYELVAITVKL------------GLENMDFTP 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            + +CD + V +Y  D  E +   +I      + A +   PC  C +  K         +
Sbjct: 73  VKELCDKLEVPYYTVD-TEIY--QII------FEARKESNPCSLCAKMRK-GAFNEKALE 122

Query: 136 LGADVLATGHY 146
           LG +  A  H+
Sbjct: 123 LGCNKFAYAHH 133


>gi|168215907|ref|ZP_02641532.1| ExsB family protein [Clostridium perfringens NCTC 8239]
 gi|182381767|gb|EDT79246.1| ExsB family protein [Clostridium perfringens NCTC 8239]
          Length = 244

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 44/203 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS  +  +LK       + +++I +TL                 G D   
Sbjct: 26  KIAVGLSGGKDSLTLLHILKNYQRFSPEKFELIAITL--------------NPGGVDNSP 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +C  I+V  Y    +   +  V           +   PC  C   ++   L     +
Sbjct: 72  LHELCKNIDVPFYEI--QTDIKEIVFD-------IKKEKNPCSLC-ANLRRGALNDNAEK 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD---QSYFLFATTQQQLCDLRFPL 192
           LG + +A GH+        DD     ++    +   +      F+       +  + F  
Sbjct: 122 LGCNKVALGHH-------KDDALETLMLSISYEGRINCFSPKSFMHKNNLTLIRPMVF-- 172

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
             +++  +R  A E    +    
Sbjct: 173 --IEESQIRKAAAEYNFPVIKNP 193


>gi|163814067|ref|ZP_02205459.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759]
 gi|158450516|gb|EDP27511.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 82/268 (30%), Gaps = 77/268 (28%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS---SVVAALLKRDG---YDVIGVTLQLYNSRKASKRKGS 66
           D +      R+ + +SGG DS       A LK+     +++  +T+ L      +     
Sbjct: 16  DYNMISPGDRIAIGISGGKDSLTLLYAMAKLKKFYPIPFELEAITVDLGFEGFDTSELRE 75

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            C   DV     VC T  +   +FDY +                     PC  C+R  K 
Sbjct: 76  YCESLDVRY--SVCKT-QIGEIIFDYRKE------------------SNPCSLCSRMRK- 113

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                    LG + +A  H+                     D   D S+ +    + ++ 
Sbjct: 114 GAFNDCAVSLGCNKIAYAHH--------------------KDDVID-SFLMSMLYEGRI- 151

Query: 187 DLRFPLGDMKKE--------------SVRDLAREMGLDIADKS----------DSQDICF 222
               P+  ++K                +R  AR   L +              +S+DI  
Sbjct: 152 HTFSPVTHLEKTGVTLIRPLIYVLEGEIRAFARANALPVCKNPCPADGVTKRQESKDIID 211

Query: 223 ---VQQGKYFDVVKRINAGIALEGDIVH 247
              V+     D +     G  ++G + H
Sbjct: 212 ELKVRVPDVKDRIFSSIEGAGIDGWVRH 239


>gi|91225130|ref|ZP_01260352.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio alginolyticus 12G01]
 gi|91190073|gb|EAS76344.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio alginolyticus 12G01]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEERF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|312897894|ref|ZP_07757308.1| GMP synthase protein [Megasphaera micronuciformis F0359]
 gi|310620989|gb|EFQ04535.1| GMP synthase protein [Megasphaera micronuciformis F0359]
          Length = 521

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 32/192 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A+SGGVDSSV AAL+ R  G  +  +     +     K +G         +     
Sbjct: 228 KVVLALSGGVDSSVAAALISRAVGNQLTCIF---VDHGLMRKNEGD--------EVEAAF 276

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-D 139
               ++    D  +RF + +                 +               R++GA D
Sbjct: 277 KDSGMNFIRVDASDRFLSKLAGVSDPERKRKTIGEEFI--------RVFEEEGRKIGAVD 328

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            LA G        V + G     + +           +           L  PL ++ K+
Sbjct: 329 FLAQG---TIYPDVIESGAGDAAVIKSHHN-------VGGLPAVVDFKGLIEPLRNLFKD 378

Query: 199 SVRDLAREMGLD 210
            VR+L  E+GL 
Sbjct: 379 EVRELGEELGLP 390


>gi|66522082|ref|XP_393336.2| PREDICTED: GMP synthase [glutamine-hydrolyzing] [Apis mellifera]
          Length = 718

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 52/227 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + +V++ +SGGVDS+V AALL     K     VI + +          RKG     +   
Sbjct: 240 NKKVLLLVSGGVDSTVCAALLHKALNKEQ---VIALHINN-----GFMRKGETQFVE--- 288

Query: 75  DARRVCDTINVSHYVFDYEERFR--------NAV--IVPFASSYAAG-----------ET 113
             + +   + +   V +    F         + V  +    +    G            T
Sbjct: 289 --QSLA-QLGIRLRVVNAGRCFMQGTTSVPLDNVTPVANANTINNKGIYGTATSPRTRLT 345

Query: 114 PLPCVDCN----RTVKFSDLLSVTRQLGADVLATGH--YIRSRLYVGDDGKRRRIMCRPM 167
            + C   N    R +     + V  +  A++       ++       D  +    +    
Sbjct: 346 KMLCATTNPEEKRKIIGDVFVRVANEAMAEMGLKPEEVFLGQGTLRPDLIESASALASGK 405

Query: 168 -DLER---DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            D  +   + S  + A   Q    +  PL D  K+ VR L  ++GL 
Sbjct: 406 ADAIKTHHNDSELVRALRAQ--GHVVEPLKDFHKDEVRQLGCDLGLP 450


>gi|76801631|ref|YP_326639.1| GMP synthase subunit B [Natronomonas pharaonis DSM 2160]
 gi|121695540|sp|Q3IS14|GUAAB_NATPD RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|76557496|emb|CAI49076.1| GMP synthase (glutamine-hydrolyzing), subunit B [Natronomonas
           pharaonis DSM 2160]
          Length = 305

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 71/191 (37%), Gaps = 40/191 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A+SGGVDSS  AAL     Y+ IG  L          RKG     +D +D        
Sbjct: 25  VIALSGGVDSSTAAALA----YEAIGDQLTPVYVDTGLMRKGETDQIRDTFDYMD----- 75

Query: 84  NVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             S  + D  +RF +A   +  P    +A GE               +  +V R + AD 
Sbjct: 76  --SLRIIDARDRFLDALSGITDPEEKRHAIGEQF-----------IREFETVARDVDADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKES 199
           L  G     R+      K                  +    +      +  P+ D+ K+ 
Sbjct: 123 LVQGTIYPDRIESEGTIKSHHN--------------VGGLPEVVDFEGIVEPMRDLYKDE 168

Query: 200 VRDLAREMGLD 210
           VR++ARE+ L+
Sbjct: 169 VREVARELDLE 179


>gi|219667493|ref|YP_002457928.1| GMP synthase [Desulfitobacterium hafniense DCB-2]
 gi|219537753|gb|ACL19492.1| GMP synthase, large subunit [Desulfitobacterium hafniense DCB-2]
          Length = 510

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V            RK      + ++    
Sbjct: 215 DRQVLCALSGGVDSSVAAVLVHKAIGDQLTCVF-----VDHGFMRKNEPEQVKKIF---- 265

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +  ++     D  ERF      V  P       G         N  ++        R+
Sbjct: 266 -TEQFHLKLIFVDARERFMAKIGGVSDPETKRIGIG---------NEFIR--LFEDEARK 313

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  D L  G      +  G D           +  +   + +    +    +L  PL  
Sbjct: 314 LGQIDFLVQGTLYPDIVESGTDT---------AETIKSH-HNVGGLPEDMQFELIEPLDM 363

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+G+ 
Sbjct: 364 LFKDEVREVGAELGIP 379


>gi|317177792|dbj|BAJ55581.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F16]
          Length = 508

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEEIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+G+ 
Sbjct: 358 PLRELFKDEVRLLGKELGIS 377


>gi|237739593|ref|ZP_04570074.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 2_1_31]
 gi|229423201|gb|EEO38248.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 2_1_31]
          Length = 512

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 215 NKQVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     N++    + EERF +           AG T     +  R +   + + V     
Sbjct: 264 VYAKNFNMNIKCVNAEERFLSK---------LAGVT---DPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +         E            + L   
Sbjct: 312 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|163802484|ref|ZP_02196377.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio sp. AND4]
 gi|159173785|gb|EDP58600.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio sp. AND4]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 37/195 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G           
Sbjct: 222 VILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG----------- 270

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               D   ++    D EERF         ++      P         V        +++L
Sbjct: 271 ----DKFGLNIIKVDAEERF--------LNALEGKSDPEEKRKTIGHVFVDVFDEESKKL 318

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +  + +           +          L  PL ++
Sbjct: 319 ENAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPLREL 371

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 372 FKDEVRKIGLELGLP 386


>gi|87199217|ref|YP_496474.1| argininosuccinate synthase [Novosphingobium aromaticivorans DSM
           12444]
 gi|119361300|sp|Q2G933|ASSY_NOVAD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|87134898|gb|ABD25640.1| argininosuccinate synthase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 404

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV   +LK          LQ+  + +          G+++  AR   
Sbjct: 5   KKVVLAYSGGLDTSV---ILK---------WLQVTYNCEVVTFTADLGQGEELEPARAKA 52

Query: 81  DTINVS-HYVF--DYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
             + V  H+++  D  E F    + P   + A  E          R +    L+ + R+ 
Sbjct: 53  KLMGVPDHHIYIDDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLIEIARET 112

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 113 GADAVAHG 120


>gi|15895957|ref|NP_349306.1| GMP synthase [Clostridium acetobutylicum ATCC 824]
 gi|24211761|sp|Q97FM9|GUAA_CLOAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|15025732|gb|AAK80646.1|AE007767_11 GMP synthase [Clostridium acetobutylicum ATCC 824]
 gi|325510109|gb|ADZ21745.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium acetobutylicum EA 2018]
          Length = 510

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V     +     K +G             
Sbjct: 215 DKKVLCALSGGVDSSVAAVLVHKAIGKQLTCVF---VDHGLLRKDEGDQVESIFR----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + ++RF   +                 +     ++         +LG 
Sbjct: 267 --KQFDMNLIRVNAKDRFLGKLKGISDPERKRK------IIGEEFIRV--FEEEANKLGQ 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G       +           +    +    +L  PL ++ K
Sbjct: 317 IDFLVQG---TIYPDVVESGTDTSATIKSHHN-------VGGLPEDMQFELIEPLRELFK 366

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 367 DEVRAVGEELGIP 379


>gi|332041664|gb|EGI78020.1| GMP synthase [Hylemonella gracilis ATCC 19624]
          Length = 539

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +              
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMEMF------------ 277

Query: 77  RRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                 ++      D  E F      V  P       G   +              L   
Sbjct: 278 ---AGKLHAKVVRVDASELFLRELAGVNDPEQKRKIIGRLFVDVFKAEAE-----KLKAA 329

Query: 134 R--QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRF 190
           R    GA  LA G      +  G    ++ +  +           +     +QL   L  
Sbjct: 330 RPGSKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLE 381

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR+L   +GL 
Sbjct: 382 PLRDLFKDEVRELGVALGLP 401


>gi|239830925|ref|ZP_04679254.1| argininosuccinate synthase [Ochrobactrum intermedium LMG 3301]
 gi|239823192|gb|EEQ94760.1| argininosuccinate synthase [Ochrobactrum intermedium LMG 3301]
          Length = 406

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  AR+  + + +   ++ D  E F    + P   + A  E          R +    L+
Sbjct: 48  LEPARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLI 107

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 108 DIARKTGADAIAHG 121


>gi|268589343|ref|ZP_06123564.1| GMP synthase [Providencia rettgeri DSM 1131]
 gi|291315369|gb|EFE55822.1| GMP synthase [Providencia rettgeri DSM 1131]
          Length = 525

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSC 67
           L +   D  V++A+SGGVDSSV A LL R  G  +  V      L+L N         + 
Sbjct: 221 LKEQIGDDHVLLALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRL-NEADQVMEMFAG 279

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               ++  A+     +N    + D E + R  +   F   +    + LP +         
Sbjct: 280 KFDLNIIHAKAEDRFLNALAGISDPEAK-RKKIGHVFIEVFDEESSKLPNIKW------- 331

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                        LA G      +        +  + +           +          
Sbjct: 332 -------------LAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMKLG 371

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR +  E+GL 
Sbjct: 372 LVEPLKELFKDEVRKIGLELGLP 394


>gi|150401224|ref|YP_001324990.1| PP-loop domain-containing protein [Methanococcus aeolicus Nankai-3]
 gi|150013927|gb|ABR56378.1| PP-loop domain protein [Methanococcus aeolicus Nankai-3]
          Length = 311

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 26/204 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KDM ++V +SGG DS V+A +LK   Y  I  T ++         +G     + +  A  
Sbjct: 52  KDMTIIVGLSGGKDSLVMAHVLKEL-YKPIPNT-RIIGVMVDEGIEGY--RKEGITHAIE 107

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSDLLSVT 133
            C+  N+ + +      F+  V                    PC  C   ++   L  V+
Sbjct: 108 FCEEYNMEYKI----ATFKETV-GYNLDEIVKIAKEKNVNLNPCTFCG-VIRRKILNKVS 161

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD--QSYFLFATTQQQLCDLRFP 191
               AD LA GH +            +  + +   L +D   S F+             P
Sbjct: 162 LNENADYLAIGHNLDDIAQAVMMNYIKGDINKLAILGKDAGSSLFVKRMK---------P 212

Query: 192 LGDMKKESVRDLAREMGLDIADKS 215
           L D+ +  V   A  +GL+     
Sbjct: 213 LQDIPEHEVLLFADLIGLNYHKDP 236


>gi|34762616|ref|ZP_00143609.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase; Fibronectin/fibrinogen-binding
           protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887696|gb|EAA24772.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase; Fibronectin/fibrinogen-binding
           protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 312

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 41  KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV 100
           +  G +VI +               S   G     A  +   + +     D+++R    V
Sbjct: 3   QEQGIEVIAL------------NFVSHFFGGKNEKAESMAKQLGIKLEYIDFKKRHILVV 50

Query: 101 IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
             P    Y  G+   PC+DC+  + F     +  + GA  + +G  +  R    +
Sbjct: 51  EDPV---YGRGKNMNPCIDCHSLM-FKIAGELLEEYGASFVISGEVLGQRPMSQN 101


>gi|288925153|ref|ZP_06419088.1| argininosuccinate synthase [Prevotella buccae D17]
 gi|288337918|gb|EFC76269.1| argininosuccinate synthase [Prevotella buccae D17]
          Length = 402

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  +VVVA SGG+D+S     L +DG++V                     + + +    
Sbjct: 4   NKKKKVVVAFSGGLDTSYTVMKLSQDGWEVYAA-----------CANTGGFSAEQLKTNE 52

Query: 78  RVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTR 134
                +    YV  D  + +    +              P    +  + F    +    +
Sbjct: 53  ENAYKLGAKAYVTLDVTQEYYEKSLKYMIFGNVLRNNCYPISVSSERI-FQAIAIARYAK 111

Query: 135 QLGADVLATG 144
           ++GAD +A G
Sbjct: 112 EIGADAIAHG 121


>gi|269120170|ref|YP_003308347.1| GMP synthase, large subunit [Sebaldella termitidis ATCC 33386]
 gi|268614048|gb|ACZ08416.1| GMP synthase, large subunit [Sebaldella termitidis ATCC 33386]
          Length = 512

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 28/194 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD +V++ +SGGVDSSV A L+    G  +  + +     RK   +K      +      
Sbjct: 214 KDDKVILGLSGGVDSSVAAVLINNAIGKQLTCIFVDTGLLRKDEAKKVLEYYKEHFD--- 270

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                +++     D + RF   +                 +  +  +        T +L 
Sbjct: 271 -----LDIKF--VDAKNRFFEKLKGADEPEQKRK------IIGHEFI--EIFNEETYKLK 315

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G        +  D    + +  P    +   + +    +    +L  PL ++ 
Sbjct: 316 GAKFLAQG-------TIYPDVIESQSIKGPSHTIKSH-HNVGGLPEDLAFELLEPLKELF 367

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+GL 
Sbjct: 368 KDEVRKVGAELGLP 381


>gi|223041508|ref|ZP_03611711.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus minor 202]
 gi|223017766|gb|EEF16173.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus minor 202]
          Length = 523

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIVRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|51246817|ref|YP_066701.1| hypothetical protein DP2965 [Desulfotalea psychrophila LSv54]
 gi|50877854|emb|CAG37694.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 360

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K ++ +   SGG+DS + A L+   G ++I V        +      S    QDV   + 
Sbjct: 2   KSIKALSLFSGGLDSILAARLIMEQGIELIAV--------QFVTPFFSYEILQDVEAYQA 53

Query: 79  -VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR--- 134
            V     ++  V +    +   +  P    Y  G+   PC+DC        +L   +   
Sbjct: 54  EVKRKYGINVLVENISPGYMELLRKPV---YGFGKNFNPCIDCKIF-----MLKRAKELM 105

Query: 135 -QLGADVLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLE 170
            +LGA  L TG  +  R              D   + ++ RP+  +
Sbjct: 106 VELGASFLVTGEVVGQRPMSQRRDALNVISRDSDNKTVLLRPLSAK 151


>gi|163846550|ref|YP_001634594.1| GMP synthase [Chloroflexus aurantiacus J-10-fl]
 gi|222524339|ref|YP_002568810.1| GMP synthase [Chloroflexus sp. Y-400-fl]
 gi|163667839|gb|ABY34205.1| GMP synthase, large subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448218|gb|ACM52484.1| GMP synthase, large subunit [Chloroflexus sp. Y-400-fl]
          Length = 513

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDS+V A ++ R  G  +  V +     R     +      +  +      
Sbjct: 217 RVICALSGGVDSAVAALIIHRAIGDRLTCVFVDNGLLRAGEAEQVIATFSEHFH------ 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KF-SDLLSVTRQL 136
               V     D  E F  A           G T     +  R +   KF        R L
Sbjct: 271 ----VPLIAVDAREEFMTA---------LKGVT---DPEQKRKIIGEKFIRIFEREARAL 314

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G + LA G      +      + +    +           +          L  PL  +
Sbjct: 315 AGVEFLAQGTLYPDVIESTAPDRPKAAKIKTHHN-------VGGLPADMQLKLVEPLRYL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR    ++GL 
Sbjct: 368 FKDEVRAAGLQLGLP 382


>gi|291539156|emb|CBL12267.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Roseburia intestinalis XB6B4]
          Length = 539

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 223 EIREKVGNGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKNEGDEVEEV 279

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              + +      +++    + ++R+   +       +         +     ++      
Sbjct: 280 FGPNGQ-----FDLNFIRVNAQDRYYGKLAGVTEPEHKRK------IIGEEFIRV--FEE 326

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLC 186
             +++GA D LA G      +  G  G+    +       +    D              
Sbjct: 327 EAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD------------FK 374

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL ++ K+ VR    E+G+ 
Sbjct: 375 EIIEPLRNLFKDEVRKAGLELGIP 398


>gi|291286025|ref|YP_003502841.1| GMP synthase, large subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290883185|gb|ADD66885.1| GMP synthase, large subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 515

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDSSV A L+ R  G ++  V     ++    K +G     + V DA R
Sbjct: 218 DKRVLCGLSGGVDSSVAAVLIHRAIGDNLTCVF---VDNGLLRKDEG-----KQVEDAFR 269

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +   ++    + E+RF      V  P     A G         N  V+       + +
Sbjct: 270 --NQFKMNLVAVNAEDRFLSVLKGVTDPEKKRKAIG---------NMFVRI--FEEESSK 316

Query: 136 LG-ADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           LG  + LA        I S  + G     +                +    +     L  
Sbjct: 317 LGEFEFLAQGTLYPDVIESVSFKGPSATIKTHHN------------VGGLPEDMKFKLLE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+G+ 
Sbjct: 365 PLRELFKDEVRRVGLELGIP 384


>gi|172044120|sp|A6WV13|ASSY_OCHA4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 406

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  AR+  + + +   ++ D  E F    + P   + A  E          R +    L+
Sbjct: 48  LEPARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLI 107

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 108 EIARKTGADAIAHG 121


>gi|159905824|ref|YP_001549486.1| PP-loop domain-containing protein [Methanococcus maripaludis C6]
 gi|159887317|gb|ABX02254.1| PP-loop domain protein [Methanococcus maripaludis C6]
          Length = 296

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 24/141 (17%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTL-QLYNSRKASKRKGS 66
           LN+ + D N KD +++V +SGG DS+V  A+ K  G +V   V     ++   ++     
Sbjct: 28  LNNFE-DLNLKDEKIIVMLSGGKDSAVALAIAKDLGLNVHLCVHFVHKWSWDISTNE--- 83

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                    A+++ D  NV     D  E          A      +    C  C   +K 
Sbjct: 84  ---------AKKLADKFNVPIIFPDITEE--------LAKKTQDAKGKSICRICKTIMK- 125

Query: 127 SDLLSVTRQLGADVLATGHYI 147
           + ++ + ++    ++ TG   
Sbjct: 126 ARMIDIAKEENVRIIMTGETA 146


>gi|153007431|ref|YP_001368646.1| argininosuccinate synthase [Ochrobactrum anthropi ATCC 49188]
 gi|151559319|gb|ABS12817.1| Argininosuccinate synthase [Ochrobactrum anthropi ATCC 49188]
          Length = 412

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 7   MSKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEE 53

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  AR+  + + +   ++ D  E F    + P   + A  E          R +    L+
Sbjct: 54  LEPARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLI 113

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 114 EIARKTGADAIAHG 127


>gi|317496474|ref|ZP_07954824.1| GMP synthase domain-containing protein [Gemella moribillum M424]
 gi|316913405|gb|EFV34901.1| GMP synthase domain-containing protein [Gemella moribillum M424]
          Length = 514

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 24/199 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+ A+SGGVDSSVVAALL K  G  +I + +     RK           +
Sbjct: 208 EIREEVGDQKVLCALSGGVDSSVVAALLDKAIGNQLICMFIDHGLLRKGEAEAVMSTFSK 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           ++          N++    D +ERF   +                 V       F +   
Sbjct: 268 EID------GGFNMNLIKVDAKERFLGKLKGVSDPEKKRKIIGNEFVYV-----FDE--E 314

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +      LA G        V + G +     +           +    +     L  P
Sbjct: 315 CAKLHDVPFLAQG---TLYTDVIESGTKNAQTIKSHHN-------VGGLPEDMRFSLIEP 364

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L   +GL 
Sbjct: 365 LNTLFKDEVRALGEALGLP 383


>gi|283456168|ref|YP_003360732.1| argininosuccinate synthase [Bifidobacterium dentium Bd1]
 gi|283102802|gb|ADB09908.1| argG Argininosuccinate synthase [Bifidobacterium dentium Bd1]
          Length = 412

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++ +            +A    
Sbjct: 6   RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGAVEA---- 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F +   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 62  -------YVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFGAD 114

Query: 140 VLATG 144
            ++ G
Sbjct: 115 TISHG 119


>gi|269965178|ref|ZP_06179312.1| GMP synthase/glutamine amidotransferase protein [Vibrio
           alginolyticus 40B]
 gi|269830164|gb|EEZ84391.1| GMP synthase/glutamine amidotransferase protein [Vibrio
           alginolyticus 40B]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEERF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|182419676|ref|ZP_02950917.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237665920|ref|ZP_04525908.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376413|gb|EDT73994.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237658867|gb|EEP56419.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 274

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 79/248 (31%), Gaps = 58/248 (23%)

Query: 23  VVVAMSGGVDSSVVAALLK-------RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +++A SGGVDSS    LLK       +    V  VTL                  +D+  
Sbjct: 23  IMIAFSGGVDSS---LLLKIACDCSKKKSTKVYAVTLHTSLHPM-----------KDIEI 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           AR+V +    +H +   +E     +I               C  C + + F+ +     +
Sbjct: 69  ARKVANESGAAHIILKIDELKDAGIINNPV---------NRCYLCKKHL-FTKIKEKAAE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L    +  G          DD    R   + +         L   +  QL          
Sbjct: 119 LNIKNVFDG-------TNEDDMHVYRPGIKALKE-------LSVISPLQL-------TGF 157

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNG---Q 251
            K+ VR +A E  + +AD+  +   C   +  Y   +         +G D V   G    
Sbjct: 158 TKQDVRKMAEEYKISVADRPSAP--CLATRFPYGTSLNSEEMRNVEKGEDFVRKLGFYNV 215

Query: 252 ILGRHNGI 259
            L  H  I
Sbjct: 216 RLRVHKDI 223


>gi|120612021|ref|YP_971699.1| GMP synthase [Acidovorax citrulli AAC00-1]
 gi|120590485|gb|ABM33925.1| GMP synthase (glutamine-hydrolyzing) [Acidovorax citrulli AAC00-1]
          Length = 541

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 24/193 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                     D+     V  
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---------VDHGLLRLNEGDMVMDMFVG- 279

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  E F   +             G   +  V      K +   +  ++ GA
Sbjct: 280 KLHAKVVRVDASELFLRELAGVSDPEQKRKIIGRLFV-DVFKAEAAKLTASGASRKEKGA 338

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
             LA G      +  G    ++ +  +           +     +QL   L  PL D+ K
Sbjct: 339 TFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPLRDLFK 390

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 391 DEVRELGVALGLP 403


>gi|240949033|ref|ZP_04753387.1| GMP synthase [Actinobacillus minor NM305]
 gi|240296620|gb|EER47238.1| GMP synthase [Actinobacillus minor NM305]
          Length = 523

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIVRVNAEDRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|229827773|ref|ZP_04453842.1| hypothetical protein GCWU000182_03165 [Abiotrophia defectiva ATCC
           49176]
 gi|229787972|gb|EEP24086.1| hypothetical protein GCWU000182_03165 [Abiotrophia defectiva ATCC
           49176]
          Length = 514

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 26/200 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G      
Sbjct: 208 EIREKVGNGKVLCALSGGVDSSVAAVLLSKAVGKQLTCVF---VDHGLLRKNEGDEVEAV 264

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D      +  ++    + ++RF + +                 +     ++      
Sbjct: 265 FGPDG-----SYELNFIRVNAQQRFYDKLAGVTEPETKRK------IIGEEFIRV--FEE 311

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +++G  D L  G      +  G  G+   I        +               ++  
Sbjct: 312 EAKKIGTVDYLVQGTIYPDVVESGVGGESVVI--------KSHHNVGGLPDYVDFKEIIE 363

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+G+ 
Sbjct: 364 PLRNLFKDEVRKVGLELGIP 383


>gi|170760258|ref|YP_001786566.1| hypothetical protein CLK_0618 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407247|gb|ACA55658.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A3
           str. Loch Maree]
          Length = 266

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+    LL +   + +G      ++  +           ++ +A+ + + 
Sbjct: 18  VAVAFSGGVDST----LLLKAAKEALG------DNAISITVVSPYIPKWEIEEAKELANN 67

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 68  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKEKGVK 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 113 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 151

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++ +GL+  +K      C + +  Y   +K 
Sbjct: 152 IRTLSKCLGLETWNKP--AYACLLSRIPYNQEIKE 184


>gi|148378111|ref|YP_001252652.1| hypothetical protein CBO0104 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931931|ref|YP_001382511.1| hypothetical protein CLB_0140 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934535|ref|YP_001386063.1| hypothetical protein CLC_0152 [Clostridium botulinum A str. Hall]
 gi|148287595|emb|CAL81660.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927975|gb|ABS33475.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930449|gb|ABS35948.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. Hall]
          Length = 268

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 52/231 (22%)

Query: 19  KDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD++ V VA SGGVDS+    LLK    + +G      ++  +           ++ +AR
Sbjct: 15  KDLKSVAVAFSGGVDST---LLLKSAK-EALG------DNAISITIVSPYIPKWEIREAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            + D I +  Y  +           P      +     P   C  C ++V F+ +  + R
Sbjct: 65  ELVDKIGIKSYFVEV----------PMLEEIRS----NPEDRCYICKKSV-FNKIKDLAR 109

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G   +  G          DD K  R   R +                 L +       
Sbjct: 110 EKGIKYIVDGTNA-------DDTKDYRPGMRALKEL--------DVKSPLLDNSI----- 149

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             KE +R L++E+ LD  DK      C + +  Y   +K  +     + ++
Sbjct: 150 -NKEEIRVLSKELQLDTWDKP--AYACLLSRIPYNQKIKEKDLDRIEKAEV 197


>gi|297181898|gb|ADI18075.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Acidobacteriales bacterium
           HF0200_23L05]
          Length = 485

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 45/239 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           P+  RVVVA+SGG DS V+A LL        + V+G  L +         +    A +D 
Sbjct: 34  PQGGRVVVALSGGGDSVVLAHLLCEMSAIARWSVVG-FLHI-------NHQLRAVANEDA 85

Query: 74  YDARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              R++ D ++V       +     R+  I                      +++     
Sbjct: 86  DFCRQLSDELHVPFLIEAVNVRAMSRDRGIS--IEE------------AGHRLRYEIFNR 131

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--LR 189
           + R   AD +ATGH                 + R               +  +  +  + 
Sbjct: 132 ICRSHLADCVATGH-----TRDDLAETVLLRLIRGAGPR--------GLSGIRPRNGFVV 178

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
            PL D+ ++ +R+  +  GL   + + ++D   V + +    +         EG IV +
Sbjct: 179 RPLLDVTRKELREYLQVRGLPHREDATNEDTS-VARNRIRHSLIPFLKTNFSEG-IVDV 235


>gi|239942912|ref|ZP_04694849.1| argininosuccinate synthase [Streptomyces roseosporus NRRL 15998]
 gi|239989372|ref|ZP_04710036.1| argininosuccinate synthase [Streptomyces roseosporus NRRL 11379]
          Length = 402

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRK 59
           +++   ++L  LD D+      VV   SGG+DSS +   L+R G  +V  V++ +     
Sbjct: 4   LLIRSFSQLEELDPDRP-----VVTLFSGGLDSSYLLLRLRRMGMREVHAVSVDIGEDES 58

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA--AGETPLPC 117
           +S +             ++V + +  + ++ D  E F    + P  ++ A   G  P+  
Sbjct: 59  SSYK-------------QQVAEELGATIHILDRREEFAERYVAPAIAAQAVYLGIHPVSS 105

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
                 +  S  + + R LGA  +   H                 + R
Sbjct: 106 TLSRPLIAHSA-VELARGLGAQAVL--HTANRSQNTLRRLNGALRLLR 150


>gi|171742782|ref|ZP_02918589.1| hypothetical protein BIFDEN_01896 [Bifidobacterium dentium ATCC
           27678]
 gi|171278396|gb|EDT46057.1| hypothetical protein BIFDEN_01896 [Bifidobacterium dentium ATCC
           27678]
          Length = 418

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++ +            +A    
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGAVEA---- 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F +   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 68  -------YVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFGAD 120

Query: 140 VLATG 144
            ++ G
Sbjct: 121 TISHG 125


>gi|20090985|ref|NP_617060.1| argininosuccinate synthase [Methanosarcina acetivorans C2A]
 gi|22095473|sp|Q8TNY5|ASSY_METAC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|19916071|gb|AAM05540.1| argininosuccinate synthase [Methanosarcina acetivorans C2A]
          Length = 394

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V +A SGG+D+SV   +LK   GYD VI +          S   G         DA+ 
Sbjct: 3   KKVALAYSGGLDTSVCIPILKEKYGYDEVITI----------SVDVGQPEEEIKKADAK- 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I+  HY  D +E F    I P   +    E  +      R +    ++    + GA
Sbjct: 52  -AEKISNKHYTIDAKEEFVKDYIFPLIKANGDYEGYVMGTSVARPLIAKKVVEAAIKEGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G                   C       DQ  F     Q  +  +  P+ +M   
Sbjct: 111 VALAHG-------------------CTGK--GNDQLRFEAVFRQTDMD-VIAPMREMNLT 148

Query: 199 SVRDL--AREMGLDIADKS 215
              ++  A+E G+ +    
Sbjct: 149 REWEIDYAKEHGIPVEVTK 167


>gi|315180967|gb|ADT87881.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio furnissii NCTC 11218]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSV 132
                  D   ++    D EERF +A           G++           V        
Sbjct: 271 -------DKFGLNIIKVDAEERFLDA---------LKGKSDPEDKRKTIGHVFVDVFDEE 314

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +++L  A  LA G      +        +  + +           +          L  P
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEP 367

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 368 LRELFKDEVRKIGLELGLP 386


>gi|313203122|ref|YP_004041779.1| tRNA(ile)-lysidine synthetase [Paludibacter propionicigenes WB4]
 gi|312442438|gb|ADQ78794.1| tRNA(Ile)-lysidine synthetase [Paludibacter propionicigenes WB4]
          Length = 441

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 21/131 (16%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           NPK  RV+V +SGG DS V+  +L   GY+ +      +   + S R        D    
Sbjct: 16  NPKA-RVIVGVSGGTDSVVLLHILHVLGYECVVAHCNFHLRMEESDR--------DEEFV 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +  T+ +  Y  D+     + V      SY A    +      R +++     + ++L
Sbjct: 67  RALSKTMKLPFYSIDF-----DTV------SY-ADRHGISIEMAARDLRYEWFHDLLKKL 114

Query: 137 GADVLATGHYI 147
            A+ +A  H+ 
Sbjct: 115 DAEAIAVAHHA 125


>gi|306822640|ref|ZP_07456018.1| argininosuccinate synthase [Bifidobacterium dentium ATCC 27679]
 gi|309800992|ref|ZP_07695124.1| argininosuccinate synthase [Bifidobacterium dentium JCVIHMP022]
 gi|304554185|gb|EFM42094.1| argininosuccinate synthase [Bifidobacterium dentium ATCC 27679]
 gi|308222528|gb|EFO78808.1| argininosuccinate synthase [Bifidobacterium dentium JCVIHMP022]
          Length = 418

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++ +            +A    
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGAVEA---- 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F +   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 68  -------YVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFGAD 120

Query: 140 VLATG 144
            ++ G
Sbjct: 121 TISHG 125


>gi|260654958|ref|ZP_05860446.1| NAD+ synthetase [Jonquetella anthropi E3_33 E1]
 gi|260630273|gb|EEX48467.1| NAD+ synthetase [Jonquetella anthropi E3_33 E1]
          Length = 248

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 61/193 (31%), Gaps = 46/193 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+  A LL R  G D V+ V +                   D  DAR V  
Sbjct: 31  VLGLSGGLDSATSAGLLVRALGADRVLAVAM------------PCGSQPADERDARLVAQ 78

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
              +   V D  E   +        +  A          N    ++ + L ++ +  G  
Sbjct: 79  AFGLRLAVIDLTEAEES-----LHRALCAAGGVDGLARSNIKPRLRMTSLYALAQSRG-- 131

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G+   + L  G          +  D   D                  PL    K  
Sbjct: 132 YLVCGNSNAAELVTG-------YFTKFGDSGCD----------------FMPLAGFSKRE 168

Query: 200 VRDLAREMGLDIA 212
           VR LAR +G+   
Sbjct: 169 VRLLARSLGVPTP 181


>gi|242278578|ref|YP_002990707.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121472|gb|ACS79168.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 310

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 49/132 (37%), Gaps = 24/132 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+VA+SGG DS  +   L   GYDV G+ + L                +    AR V
Sbjct: 47  DDKVLVALSGGKDSLGLMYALSELGYDVTGLHIDL-------------GIYESSIKARAV 93

Query: 80  ----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C        V + E+     V +P    +     P  C  C +  K      V  +
Sbjct: 94  VEGFCKDKGYPLRVVELEKE---GVPMPLIKKHI--RRP-ICAICGKF-KRHYFNKVAIE 146

Query: 136 LGADVLATGHYI 147
            G   LATGH +
Sbjct: 147 EGYTALATGHNL 158


>gi|21231685|ref|NP_637602.1| argininosuccinate synthase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768192|ref|YP_242954.1| argininosuccinate synthase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991327|ref|YP_001903337.1| argininosuccinate synthase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|24211487|sp|Q8P8J4|ASSY_XANCP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|21113384|gb|AAM41526.1| argininosuccinate synthase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573524|gb|AAY48934.1| argininosuccinate synthase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733087|emb|CAP51285.1| Argininosuccinate synthase, probable [Xanthomonas campestris pv.
           campestris]
          Length = 397

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V+A SGG+D+S     L+  GY V  V          +   G     +D  + +R  + 
Sbjct: 6   IVLAFSGGLDTSFCIPYLQERGYAVHTVF---------ADTGGVDAEERDFIE-KRAAEL 55

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
              SH   D         + PF  +    +   P +  +R +     L    +LG  ++A
Sbjct: 56  GAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIA 115

Query: 143 TG 144
            G
Sbjct: 116 HG 117


>gi|319899244|ref|YP_004159337.1| GMP synthase [Bartonella clarridgeiae 73]
 gi|319403208|emb|CBI76767.1| GMP synthase [Bartonella clarridgeiae 73]
          Length = 518

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 70/214 (32%), Gaps = 58/214 (27%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     RV+  +SGGVDSSVVA LL    G  +I V     +     K +    A + 
Sbjct: 215 IRKKVGKSRVICGLSGGVDSSVVAVLLHEAIGDQLICVF---VDHGLMRKNE----AEEV 267

Query: 73  VYDARRVCDTINVSHYVFDYEERF------------RNAVIVPFASSYAAGETPLPCVDC 120
           +   R   D  N+     +    F            +  +I          ET       
Sbjct: 268 LKLFR---DHYNIKLVHVNAASIFINALEGEIDPEKKRKIIGRLFIEVFEEETK------ 318

Query: 121 NRTVKFSDLLSVTRQLGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
               K           GA+ LA        I S   +G+    +                
Sbjct: 319 ----KIG---------GAEFLAQGTLYPDVIESVSAIGEAVTIKSHHN------------ 353

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    ++   +L  PL ++ K+ VR L RE+GL 
Sbjct: 354 VGGLPERMKMELIEPLRELFKDDVRSLGRELGLP 387


>gi|288931110|ref|YP_003435170.1| NAD+ synthetase [Ferroglobus placidus DSM 10642]
 gi|288893358|gb|ADC64895.1| NAD+ synthetase [Ferroglobus placidus DSM 10642]
          Length = 256

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 44/181 (24%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+ VA L  R  G D V+GV +           +      +D+ DA  VC  + + H V
Sbjct: 34  DSATVAFLSARALGKDRVLGVIM----------PEKGVTPEEDIEDAAEVCRILGIDHRV 83

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
                 F N ++  F S    G       +    V+ + L     +    V  TG+    
Sbjct: 84  V-----FINEIVESFIS--KLGSDGKALANIKPRVRMTILYFFANKHNLLVAGTGNKSEL 136

Query: 150 RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
           R+     G   +     +D                      P+GD+ K  V +LA+ +G+
Sbjct: 137 RI-----GYFTKYGDGGVDF--------------------LPIGDLYKTEVWELAKYLGV 171

Query: 210 D 210
            
Sbjct: 172 P 172


>gi|257126811|ref|YP_003164925.1| GMP synthase [Leptotrichia buccalis C-1013-b]
 gi|257050750|gb|ACV39934.1| GMP synthase, large subunit [Leptotrichia buccalis C-1013-b]
          Length = 514

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D  V++A+SGGVDSSV A L+    G+ +  +     ++    K +G       
Sbjct: 208 IKKTVGDEHVLLALSGGVDSSVAAVLINNAIGHQLTCMF---VDTGLLRKDEGKKVLEYY 264

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     +N+     D ++RF N +         A       +  N  +        
Sbjct: 265 KEH-----FDLNIVF--VDAKDRFLNKLKG--IDEPEAKRK----IIGNEFI--EVFNEE 309

Query: 133 TRQL----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            R+L    GA  LA G        +  D    + +  P    +            Q   L
Sbjct: 310 IRKLKGQEGAKFLAQG-------TIYPDVIESQSIKGPSHTIKSHHNVGGLPEDLQFE-L 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 362 LEPLKELFKDEVRKVGHELGLP 383


>gi|15645037|ref|NP_207207.1| GMP synthase [Helicobacter pylori 26695]
 gi|3122166|sp|O25165|GUAA_HELPY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|2313515|gb|AAD07477.1| GMP synthase (guaA) [Helicobacter pylori 26695]
          Length = 508

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLKIPLNTIDAKEVFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|284048040|ref|YP_003398379.1| GMP synthase, large subunit [Acidaminococcus fermentans DSM 20731]
 gi|283952261|gb|ADB47064.1| GMP synthase, large subunit [Acidaminococcus fermentans DSM 20731]
          Length = 514

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 29/200 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D  V+ AMSGGVDSSV A L+ +  G  +  V     +     K +G      
Sbjct: 211 EIREKVGDKNVLCAMSGGVDSSVAAVLVHKAVGKQLTCVF---VDHGLLRKDEGDQVEQV 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D        +++    + ++RF + +                 +     ++      
Sbjct: 268 FKRD-------FDMNLIRVNAQDRFLSKLKGVSDPEKKRK------IIGEEFIRV--FEE 312

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            ++++G  D L  G      +  G  G       +           +    +     L  
Sbjct: 313 ESKKIGHVDFLVQGTIYPDVVESG--GTGTSATIKSHHN-------VGGLPKDMKLGLIE 363

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+G+ 
Sbjct: 364 PLRELFKDEVRAVGEELGIP 383


>gi|110667066|ref|YP_656877.1| NAD synthetase [Haloquadratum walsbyi DSM 16790]
 gi|109624813|emb|CAJ51221.1| NAD(+) synthase (glutamine-hydrolyzing) [Haloquadratum walsbyi DSM
           16790]
          Length = 275

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 42/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+ VA +     G + V G+ +    S        S        DA  V +
Sbjct: 45  VLGLSGGIDSTTVADMAVNALGAENVHGLVM---PSEVNDDANMS--------DAEWVAE 93

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +++ + V + +      +   F  +          V  N  V+   +L+       + +
Sbjct: 94  ELDIPYEVIEIQP-----IAESFFEAIPEAADDQMAVG-NVYVRTRAVLNYFLANHENKI 147

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   RS    G   K         D   D                  P+G++ K+ VR
Sbjct: 148 VLGTGNRSEALTGYYTKY-------GDQAVD----------------CNPIGNLYKQQVR 184

Query: 202 DLAREMGLD 210
            LA  +G+ 
Sbjct: 185 QLAASVGIP 193


>gi|46578552|ref|YP_009360.1| hypothetical protein DVU0135 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603868|ref|YP_968268.1| PP-loop domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46447963|gb|AAS94619.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564097|gb|ABM29841.1| PP-loop domain protein [Desulfovibrio vulgaris DP4]
 gi|311232477|gb|ADP85331.1| PP-loop domain protein [Desulfovibrio vulgaris RCH1]
          Length = 303

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D R++VA+SGG DS  +   L R GY+V G+ + L     +   +G            R
Sbjct: 46  HDDRILVALSGGKDSLALMLELSRQGYNVTGLHIDLAIPVSSPAARGV---------VER 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    +   V +               +     T   C  C + +K           G 
Sbjct: 97  FCALHGLPLIVKEMANE------GLAIPAVKERLTRPICSACGK-IKRYYFNKTAIDEGF 149

Query: 139 DVLATGHYI 147
            VLATGH +
Sbjct: 150 TVLATGHNL 158


>gi|260467302|ref|ZP_05813476.1| argininosuccinate synthase [Mesorhizobium opportunistum WSM2075]
 gi|259028906|gb|EEW30208.1| argininosuccinate synthase [Mesorhizobium opportunistum WSM2075]
          Length = 407

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G +
Sbjct: 1   MSKTKDVNKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGGE 47

Query: 73  VYDARRVCDTINVS-HYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +  AR+  + + +    V D  E F  + V   F ++     T L      R +    L+
Sbjct: 48  LEPARKKAEMMGIKDIRVVDVREEFVSDFVFPMFRANTVYEGTYLLGTSIARPLISKHLV 107

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 108 EIARETGADAIAHG 121


>gi|255654843|ref|ZP_05400252.1| NH3-dependent NAD(+) synthetase [Clostridium difficile QCD-23m63]
 gi|296449586|ref|ZP_06891363.1| NAD(+) synthase [Clostridium difficile NAP08]
 gi|296878091|ref|ZP_06902106.1| NAD(+) synthase [Clostridium difficile NAP07]
 gi|296261650|gb|EFH08468.1| NAD(+) synthase [Clostridium difficile NAP08]
 gi|296430844|gb|EFH16676.1| NAD(+) synthase [Clostridium difficile NAP07]
          Length = 251

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 41/192 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVA L+K+            +               QD  DA +V +  
Sbjct: 28  IVGVSGGIDSAVVANLIKKA-----------FPENSMGVIMSIKSNPQDREDALKVIEGC 76

Query: 84  NVSHYVFDYEERFR---NAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           ++ +   D  E      + V+        Y      +   +    V+ S + ++   LG 
Sbjct: 77  DIEYLDLDLIEPQSAILDMVVGNLKDKHLYREEYLKMTDANLRARVRMSTIYTIANNLGY 136

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V+ T +                   +  D   D                  P+ ++ K 
Sbjct: 137 LVVGTDNAAEIHTG---------YFTKFGDGGVD----------------ILPIANLTKG 171

Query: 199 SVRDLAREMGLD 210
            V + A+E+G+ 
Sbjct: 172 EVYEWAKELGVH 183


>gi|260771387|ref|ZP_05880312.1| GMP synthase [glutamine-hydrolyzing] [Vibrio furnissii CIP 102972]
 gi|260613513|gb|EEX38707.1| GMP synthase [glutamine-hydrolyzing] [Vibrio furnissii CIP 102972]
          Length = 517

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSV 132
                  D   ++    D EERF +A           G++           V        
Sbjct: 271 -------DKFGLNIIKVDAEERFLDA---------LKGKSDPEDKRKTIGHVFVDVFDEE 314

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +++L  A  LA G      +        +  + +           +          L  P
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEP 367

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+GL 
Sbjct: 368 LRELFKDEVRKIGLELGLP 386


>gi|148726265|emb|CAL07962.2| hypothetical protein [Ruminococcus flavefaciens]
          Length = 248

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 34/198 (17%)

Query: 20  DMRVVVAMSGGVDSSV---VAALLKRD-G--YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + R++V +SGG DS V      +L+R  G  Y VI VTL +  +                
Sbjct: 21  NDRILVGVSGGKDSLVLLDGLVMLQRFIGIDYKVIAVTLDMGFTNGTMDFSPITEH---- 76

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                 C+ + V +++   +      V             P PC  C   ++   L    
Sbjct: 77  ------CNALGVEYHIIPTQIA--EIVFD-------VRNEPSPCSLC-ARMRRGALHDAA 120

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LG + +A GH         DD     IM    +            T +++  +  PL 
Sbjct: 121 NDLGCNKVALGH-------NYDDTVETFIMNLFTEGRIGCYSPSTYLTHKKVT-VIRPLV 172

Query: 194 DMKKESVRDLAREMGLDI 211
              ++ VR  AR   L +
Sbjct: 173 LAPEKEVRRAARRNALPV 190


>gi|225626620|ref|ZP_03784659.1| argininosuccinate synthase [Brucella ceti str. Cudo]
 gi|260169657|ref|ZP_05756468.1| argininosuccinate synthase [Brucella sp. F5/99]
 gi|261759189|ref|ZP_06002898.1| argininosuccinate synthase [Brucella sp. F5/99]
 gi|225618277|gb|EEH15320.1| argininosuccinate synthase [Brucella ceti str. Cudo]
 gi|261739173|gb|EEY27169.1| argininosuccinate synthase [Brucella sp. F5/99]
          Length = 406

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  AR+  + + +   ++ D  E F    + P   + A  E          R +    L+
Sbjct: 48  LEPARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLI 107

Query: 131 SVTRQLGADVLATG 144
            + ++ GAD +A G
Sbjct: 108 DIAKKTGADAIAHG 121


>gi|209551290|ref|YP_002283207.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209537046|gb|ACI56981.1| Argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 407

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|118617287|ref|YP_905619.1| argininosuccinate synthase [Mycobacterium ulcerans Agy99]
 gi|166220996|sp|A0PP79|ASSY_MYCUA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118569397|gb|ABL04148.1| argininosuccinate synthase ArgG [Mycobacterium ulcerans Agy99]
          Length = 398

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + +  G +V+ V + L    +    +  C    D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGEETGREVVAVAIDLGQGGE--DMEVVCQRALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L+   R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTILNNALYMDRYPLVSAISRPLIVKHLVEAAREHGGG 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|86359504|ref|YP_471396.1| argininosuccinate synthase [Rhizobium etli CFN 42]
 gi|119361313|sp|Q2K3B7|ASSY_RHIEC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|86283606|gb|ABC92669.1| argininosuccinate synthase protein [Rhizobium etli CFN 42]
          Length = 407

 Score = 55.9 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|291533382|emb|CBL06495.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Megamonas hypermegale ART12/1]
          Length = 340

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V     +     K +G             
Sbjct: 109 DKKVLCALSGGVDSSVAAVLVHKAVGKQLTCVF---VDHGLLRKDEGDQVETIFR----- 160

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D ++RF   +                 +     ++     +   +LG 
Sbjct: 161 --KQFDMNLIRVDAKDRFLGKLAGVSDPERKRK------IIGEEFIRV--FEAEANKLGK 210

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        + + G +     +           +    +    DL  PL ++ K
Sbjct: 211 IDFLVQG---TIYPDIVESGTKTSATIKSHHN-------VGGLPEDIQFDLIEPLRELFK 260

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 261 DEVRAVGEELGIP 273


>gi|262066732|ref|ZP_06026344.1| GMP synthase [Fusobacterium periodonticum ATCC 33693]
 gi|291379531|gb|EFE87049.1| GMP synthase [Fusobacterium periodonticum ATCC 33693]
          Length = 512

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 215 NKQVILGLSGGVDSSVAAALINKAIGRQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF             AG T     +  R +   + + V     
Sbjct: 264 VYAKNFDMNIKCVNAEERFLTK---------LAGVT---DPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +         E            + L   
Sbjct: 312 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|240103541|ref|YP_002959850.1| hypothetical protein TGAM_1484 [Thermococcus gammatolerans EJ3]
 gi|239911095|gb|ACS33986.1| Thiamin biosynthesis protein (thiI) [Thermococcus gammatolerans
           EJ3]
          Length = 197

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 41/192 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +S G+DS V   L+ R G +V+ V  +        + K            +   
Sbjct: 1   MKAVALLSSGIDSPVAVYLMLRRGVEVVPVHFR---QDPIKEEKVRELWEVLSKYGK--- 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----RQL 136
             ++    V D+ E     V                        K+  +L        ++
Sbjct: 55  --LD-ELIVVDFAEEHV-PVFER-LKELKKER------WTCIFCKW-LMLRRACRIGHEV 102

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  + TG  +        D     I+    DL                  +  PL  M 
Sbjct: 103 GASAIITGDSLGQVASQTLD--NLMIVSSASDLP-----------------VLRPLIGMD 143

Query: 197 KESVRDLAREMG 208
           KE +  +A+E+G
Sbjct: 144 KEEIVKIAKEIG 155


>gi|126698374|ref|YP_001087271.1| NH3-dependent NAD(+) synthetase [Clostridium difficile 630]
 gi|255099909|ref|ZP_05328886.1| NH3-dependent NAD(+) synthetase [Clostridium difficile QCD-63q42]
 gi|255305798|ref|ZP_05349970.1| NH3-dependent NAD(+) synthetase [Clostridium difficile ATCC 43255]
 gi|115249811|emb|CAJ67628.1| NH3-dependent NAD(+) synthetase [Clostridium difficile]
          Length = 251

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 41/192 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VVA L+K+            +               QD  DA +V +  
Sbjct: 28  IVGVSGGIDSAVVANLIKKA-----------FPENSMGVIMSIKSNPQDREDALKVIEGC 76

Query: 84  NVSHYVFDYEERFR---NAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           ++ +   D  E      + V+        Y      +   +    V+ S + ++   LG 
Sbjct: 77  DIEYLDLDLIEPQSAILDMVVGNLKDKHLYREEYLKMTDANLRARVRMSTIYTIANNLGY 136

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V+ T +                   +  D   D                  P+ ++ K 
Sbjct: 137 LVVGTDNAAEIHTG---------YFTKFGDGGVD----------------ILPIANLTKG 171

Query: 199 SVRDLAREMGLD 210
            V + A+E+G+ 
Sbjct: 172 EVYEWAKELGVH 183


>gi|89896684|ref|YP_520171.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Desulfitobacterium hafniense Y51]
 gi|89336132|dbj|BAE85727.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 510

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 36/193 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV A L+ +  G  +  V            RK      + ++      +
Sbjct: 218 VLCALSGGVDSSVAAVLVHKAIGDQLTCVF-----VDHGFMRKNEPEQVKKIF-----TE 267

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             ++     D  ERF      V  P       G         N  ++        R+LG 
Sbjct: 268 QFHLKLIFVDARERFMAKIGGVSDPETKRIGIG---------NEFIR--LFEDEARKLGQ 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G D           +  +   + +    +    +L  PL  + K
Sbjct: 317 IDFLVQGTLYPDIVESGTDT---------AETIKSH-HNVGGLPEDMQFELIEPLDMLFK 366

Query: 198 ESVRDLAREMGLD 210
           + VR++  E+G+ 
Sbjct: 367 DEVREVGAELGIP 379


>gi|326771631|ref|ZP_08230916.1| argininosuccinate synthase [Actinomyces viscosus C505]
 gi|326637764|gb|EGE38665.1| argininosuccinate synthase [Actinomyces viscosus C505]
          Length = 410

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 15/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  +    RVV+A SGG+D+SV    +    G +V+ V                   G+D
Sbjct: 2   IPLSIHKDRVVLAYSGGLDTSVAIGWIGEATGREVVAV------------AVDVGQGGED 49

Query: 73  VYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLL 130
           +   R+       V  YV D  + F N   +P   + A  E   P V   +R V    L+
Sbjct: 50  LEVIRQRALDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLV 109

Query: 131 SVTRQLGADVLATG 144
              R+ GA  +A G
Sbjct: 110 KAAREFGAHTVAHG 123


>gi|299067487|emb|CBJ38686.1| GMP synthetase [Ralstonia solanacearum CMR15]
          Length = 547

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 233 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ--------------- 274

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G  T +   +  R +   + + V     ++
Sbjct: 275 ------MVLDMFEGRLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQAEAKK 328

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 329 LTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 381

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 382 LFKDEVRELGVALGLP 397


>gi|296109904|ref|YP_003616853.1| argininosuccinate synthase [Methanocaldococcus infernus ME]
 gi|295434718|gb|ADG13889.1| argininosuccinate synthase [Methanocaldococcus infernus ME]
          Length = 388

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+A SGG+D+S    LL+  GY+VI V     +  +  +          +       
Sbjct: 1   MKAVLAYSGGLDTSCCLKLLEDQGYEVISV---CVDVGQPEEEIKEVEEKAKL------- 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
             +   HY  D +E F    I     + A  E   P      R +    ++ V ++ GA+
Sbjct: 51  --LGAKHYTIDAKEEFVKDYIFRAIKANAQYE-GYPLSTALARPLIADKVVEVAKKEGAE 107

Query: 140 VLATG 144
           V+A G
Sbjct: 108 VIAHG 112


>gi|190893772|ref|YP_001980314.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652]
 gi|190699051|gb|ACE93136.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652]
 gi|327188860|gb|EGE56052.1| argininosuccinate synthase protein [Rhizobium etli CNPAF512]
          Length = 407

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|302344685|ref|YP_003809214.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075]
 gi|301641298|gb|ADK86620.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075]
          Length = 324

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 74/215 (34%), Gaps = 27/215 (12%)

Query: 23  VVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VA+SGG DS +   L L+  GY   GV L L     +     SC         R++  
Sbjct: 55  VLVAVSGGKDS-LALWLTLEELGYRTAGVHLCLEMGEFSEASLQSC---------RQMAA 104

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +    +     +      +     +         C  C    K   L  +  +LG D +
Sbjct: 105 RLGRPLHEASLGQLTDGLSMQEIVWATRRQF----CSVCGTF-KRHFLNRLCLELGFDTV 159

Query: 142 ATGHYI--RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ATGH++   +   +G+         + M     +S    AT          PL  ++   
Sbjct: 160 ATGHHLDDEAGRLLGNLIHNHLDYLQAMWPVL-ESGGDAATG---FARKVKPLCRLEGAE 215

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R  A+   L +A     Q  C   +G      ++
Sbjct: 216 IRAFAQVHELPVA-----QGKCAGSKGATLLYYQK 245


>gi|294783350|ref|ZP_06748674.1| GMP synthase [Fusobacterium sp. 1_1_41FAA]
 gi|294480228|gb|EFG28005.1| GMP synthase [Fusobacterium sp. 1_1_41FAA]
          Length = 512

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 215 NKQVILGLSGGVDSSVAAALINKAIGRQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF +           AG T     +  R +   + + V     
Sbjct: 264 VYAKNFDMNIKCVNAEERFLSK---------LAGVT---DPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +         E            + L   
Sbjct: 312 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|288561273|ref|YP_003424759.1| argininosuccinate synthase ArgG [Methanobrevibacter ruminantium M1]
 gi|288543983|gb|ADC47867.1| argininosuccinate synthase ArgG [Methanobrevibacter ruminantium M1]
          Length = 391

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 39/199 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D++V   LL+ +  Y+V+            +         +++  ++   
Sbjct: 3   KVVLAFSGGLDTTVCVKLLEEEYNYEVV------------TACVDVGQPQEELEKSQNSA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
           D IN   HY+ D ++ F    I     + A  E  PL        +     + V  + GA
Sbjct: 51  DNINAGKHYIIDAKDEFAEEYIARGIKANAEYEGYPLSTALARPLIAMKI-IEVAEKEGA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             +A G         G+D  R   + R M   +                +  P+ +M   
Sbjct: 110 TAIAHG-----CTGKGNDQFRFEAIIRSMSDFK----------------VIAPIREMNLT 148

Query: 197 KESVRDLAREMGLDIADKS 215
           +   +  A+E GL+++   
Sbjct: 149 RTEEQAYAKEHGLNLSYDK 167


>gi|119897872|ref|YP_933085.1| GMP synthase [Azoarcus sp. BH72]
 gi|226738380|sp|A1K5U3|GUAA_AZOSB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119670285|emb|CAL94198.1| GMP synthase (glutamine-hydrolyzing) [Azoarcus sp. BH72]
          Length = 521

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     ++      +G+               
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDNGLLRLNEGAQVMETFN-------R 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           ++ V     D  E+F   +             G   +                  +   A
Sbjct: 276 SLGVKVIHVDATEQFMGHLKGVSDPEQKRKIIGREFVEVFQA----------EAAKLPKA 325

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +        +    +           +    +     L  PL D+ K+
Sbjct: 326 RWLAQGTIYPDVIESAGAKTGKAHAIKSHHN-------VGGLPETLNLKLLEPLRDLFKD 378

Query: 199 SVRDLAREMGLD 210
            VR+L   +GL 
Sbjct: 379 EVRELGVALGLP 390


>gi|146302985|ref|YP_001190301.1| GMP synthase [Metallosphaera sedula DSM 5348]
 gi|145701235|gb|ABP94377.1| GMP synthase (glutamine-hydrolyzing) [Metallosphaera sedula DSM
           5348]
          Length = 369

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 43/206 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RVV A+SGGVDS+  AAL+    Y ++G         K +         ++  +A RV
Sbjct: 21  DNRVVAAVSGGVDSTTAAALM----YRILG--------DKVTPVMIDTGFLRE-NEANRV 67

Query: 80  CDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SV 132
            D +   +   + D  ERF         SS    E         +  KF D+       +
Sbjct: 68  KDLLKSVMPLKIVDRSERF--------ISSIEGLEDAEE-----KRKKFRDVFYSTISEI 114

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             Q  +  L  G      +      K +  +   + +  ++++               PL
Sbjct: 115 VAQENSRFLVQGTIAPDWIETQGGIKTQHNVLVQLGINTEKTWGFSLVE---------PL 165

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQ 218
            D+ K  VR+LAR +GL   + S+ Q
Sbjct: 166 ADLYKNEVRELARYLGLP-REISERQ 190


>gi|329944484|ref|ZP_08292649.1| argininosuccinate synthase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530249|gb|EGF57128.1| argininosuccinate synthase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 407

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +    RVV+A SGG+D+SV    +    G +V+ V                   G+D+  
Sbjct: 2   STHKDRVVLAYSGGLDTSVAIGWIGEATGREVVAV------------AVDVGQGGEDLEV 49

Query: 76  ARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
            R+       V  YV D  + F N   +P   + A  E   P V   +R V    L+   
Sbjct: 50  IRQRALDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAA 109

Query: 134 RQLGADVLATG 144
           R+ GA  +A G
Sbjct: 110 REFGAHTVAHG 120


>gi|291536851|emb|CBL09963.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Roseburia intestinalis M50/1]
          Length = 524

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 208 EIREKVGNGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKNEGDEVEEV 264

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              + +      +++    + ++R+   +       +         +     ++      
Sbjct: 265 FGPNGQ-----FDLNFIRVNAQDRYYGKLAGVTEPEHKRK------IIGEEFIRV--FEE 311

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLC 186
             +++GA D LA G      +  G  G+    +       +    D              
Sbjct: 312 EAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD------------FK 359

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL ++ K+ VR    E+G+ 
Sbjct: 360 EIIEPLRNLFKDEVRKAGLELGIP 383


>gi|297544156|ref|YP_003676458.1| NAD+ synthetase [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296841931|gb|ADH60447.1| NAD+ synthetase [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 543

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A  L   D  K     + VV +SGG+DS+VV A+     G + V+ V++        
Sbjct: 270 VYNALVLGVRDYCKKSGFKKAVVGLSGGIDSAVVCAIAVEALGKENVLAVSM-------- 321

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
                   +     DAR + + + +   V   E  F 
Sbjct: 322 ---PSRYSSEGSKSDARILAENLGIEFRVIPIEPVFE 355


>gi|150398257|ref|YP_001328724.1| argininosuccinate synthase [Sinorhizobium medicae WSM419]
 gi|166221022|sp|A6UE09|ASSY_SINMW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|150029772|gb|ABR61889.1| Argininosuccinate synthase [Sinorhizobium medicae WSM419]
          Length = 405

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVKDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|85375493|ref|YP_459555.1| putative LPS biosynthesis protein WbpG [Erythrobacter litoralis
           HTCC2594]
 gi|84788576|gb|ABC64758.1| putative LPS biosynthesis protein WbpG [Erythrobacter litoralis
           HTCC2594]
          Length = 369

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 39/204 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ +SGGVDSS V  + +  G   + V L   +N+  A     S              + 
Sbjct: 59  VMGVSGGVDSSYVGVMARDLGLRPLAVHLDNGWNTDTAVSNIHSLL------------EK 106

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++    +V ++ ++FR+     F SS      P      +  +K + L     + G   
Sbjct: 107 LDIDLYTHVVNW-DQFRDLQRSVFLSSL-----PNIEAVTDHAIK-ALLYQTADRFGLRY 159

Query: 141 LATGHYIRSRLYVGD----DGKRRRIMCRPMDLERDQS---------YFLFATTQQQLCD 187
           + +G    +   + +    +    RI+        D S          F    T   +  
Sbjct: 160 VLSGSNANTEAILPEAWGYNADDSRILLAAKKRFGDPSIGIDTYPHMTFFDYFTYIYVKK 219

Query: 188 LRF-PL---GDMKKESVRDLAREM 207
           +RF PL   GD  K    D+ ++ 
Sbjct: 220 IRFIPLLNYGDFNKARALDIMKQR 243


>gi|17988153|ref|NP_540787.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. 16M]
 gi|62289060|ref|YP_220853.1| argininosuccinate synthase [Brucella abortus bv. 1 str. 9-941]
 gi|82698997|ref|YP_413571.1| argininosuccinate synthase [Brucella melitensis biovar Abortus
           2308]
 gi|148559600|ref|YP_001258116.1| argininosuccinate synthase [Brucella ovis ATCC 25840]
 gi|161618062|ref|YP_001591949.1| argininosuccinate synthase [Brucella canis ATCC 23365]
 gi|163842349|ref|YP_001626753.1| argininosuccinate synthase [Brucella suis ATCC 23445]
 gi|189023333|ref|YP_001934101.1| Argininosuccinate synthase [Brucella abortus S19]
 gi|225851615|ref|YP_002731848.1| argininosuccinate synthase [Brucella melitensis ATCC 23457]
 gi|237814547|ref|ZP_04593545.1| argininosuccinate synthase [Brucella abortus str. 2308 A]
 gi|254690386|ref|ZP_05153640.1| argininosuccinate synthase [Brucella abortus bv. 6 str. 870]
 gi|254694874|ref|ZP_05156702.1| argininosuccinate synthase [Brucella abortus bv. 3 str. Tulya]
 gi|254696503|ref|ZP_05158331.1| argininosuccinate synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700888|ref|ZP_05162716.1| argininosuccinate synthase [Brucella suis bv. 5 str. 513]
 gi|254705253|ref|ZP_05167081.1| argininosuccinate synthase [Brucella suis bv. 3 str. 686]
 gi|254707225|ref|ZP_05169053.1| argininosuccinate synthase [Brucella pinnipedialis M163/99/10]
 gi|254709230|ref|ZP_05171041.1| argininosuccinate synthase [Brucella pinnipedialis B2/94]
 gi|254713347|ref|ZP_05175158.1| argininosuccinate synthase [Brucella ceti M644/93/1]
 gi|254716299|ref|ZP_05178110.1| argininosuccinate synthase [Brucella ceti M13/05/1]
 gi|254718294|ref|ZP_05180105.1| argininosuccinate synthase [Brucella sp. 83/13]
 gi|254731416|ref|ZP_05189994.1| argininosuccinate synthase [Brucella abortus bv. 4 str. 292]
 gi|256030753|ref|ZP_05444367.1| argininosuccinate synthase [Brucella pinnipedialis M292/94/1]
 gi|256045866|ref|ZP_05448740.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060218|ref|ZP_05450394.1| argininosuccinate synthase [Brucella neotomae 5K33]
 gi|256112579|ref|ZP_05453500.1| argininosuccinate synthase [Brucella melitensis bv. 3 str. Ether]
 gi|256158771|ref|ZP_05456637.1| argininosuccinate synthase [Brucella ceti M490/95/1]
 gi|256254158|ref|ZP_05459694.1| argininosuccinate synthase [Brucella ceti B1/94]
 gi|256258640|ref|ZP_05464176.1| argininosuccinate synthase [Brucella abortus bv. 9 str. C68]
 gi|256264874|ref|ZP_05467406.1| argininosuccinate synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|256368540|ref|YP_003106046.1| argininosuccinate synthase [Brucella microti CCM 4915]
 gi|260546353|ref|ZP_05822093.1| argininosuccinate synthase [Brucella abortus NCTC 8038]
 gi|260563153|ref|ZP_05833639.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. 16M]
 gi|260567280|ref|ZP_05837750.1| argininosuccinate synthase [Brucella suis bv. 4 str. 40]
 gi|260755930|ref|ZP_05868278.1| argininosuccinate synthase [Brucella abortus bv. 6 str. 870]
 gi|260759154|ref|ZP_05871502.1| argininosuccinate synthase [Brucella abortus bv. 4 str. 292]
 gi|260760878|ref|ZP_05873221.1| argininosuccinate synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884954|ref|ZP_05896568.1| argininosuccinate synthase [Brucella abortus bv. 9 str. C68]
 gi|261215205|ref|ZP_05929486.1| argininosuccinate synthase [Brucella abortus bv. 3 str. Tulya]
 gi|261218077|ref|ZP_05932358.1| argininosuccinate synthase [Brucella ceti M13/05/1]
 gi|261221304|ref|ZP_05935585.1| argininosuccinate synthase [Brucella ceti B1/94]
 gi|261314708|ref|ZP_05953905.1| argininosuccinate synthase [Brucella pinnipedialis M163/99/10]
 gi|261316733|ref|ZP_05955930.1| argininosuccinate synthase [Brucella pinnipedialis B2/94]
 gi|261321076|ref|ZP_05960273.1| argininosuccinate synthase [Brucella ceti M644/93/1]
 gi|261324191|ref|ZP_05963388.1| argininosuccinate synthase [Brucella neotomae 5K33]
 gi|261751400|ref|ZP_05995109.1| argininosuccinate synthase [Brucella suis bv. 5 str. 513]
 gi|261755963|ref|ZP_05999672.1| argininosuccinate synthase [Brucella suis bv. 3 str. 686]
 gi|265983254|ref|ZP_06095989.1| argininosuccinate synthase [Brucella sp. 83/13]
 gi|265987804|ref|ZP_06100361.1| argininosuccinate synthase [Brucella pinnipedialis M292/94/1]
 gi|265992280|ref|ZP_06104837.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994020|ref|ZP_06106577.1| argininosuccinate synthase [Brucella melitensis bv. 3 str. Ether]
 gi|265997266|ref|ZP_06109823.1| argininosuccinate synthase [Brucella ceti M490/95/1]
 gi|294851479|ref|ZP_06792152.1| argininosuccinate synthase [Brucella sp. NVSL 07-0026]
 gi|297247477|ref|ZP_06931195.1| argininosuccinate synthase [Brucella abortus bv. 5 str. B3196]
 gi|306838905|ref|ZP_07471733.1| argininosuccinate synthase [Brucella sp. NF 2653]
 gi|306842620|ref|ZP_07475269.1| argininosuccinate synthase [Brucella sp. BO2]
 gi|306846342|ref|ZP_07478893.1| argininosuccinate synthase [Brucella sp. BO1]
 gi|24211509|sp|Q8YEK8|ASSY_BRUME RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|75505369|sp|Q57FU2|ASSY_BRUAB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119361259|sp|Q2YPQ8|ASSY_BRUA2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166219948|sp|A5VN19|ASSY_BRUO2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189046382|sp|A9M6S7|ASSY_BRUC2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189046383|sp|B0CII7|ASSY_BRUSI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|229889863|sp|B2S7X3|ASSY_BRUA1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807511|sp|C0RGD6|ASSY_BRUMB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|17983911|gb|AAL53051.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. 16M]
 gi|62195192|gb|AAX73492.1| ArgG, argininosuccinate synthase [Brucella abortus bv. 1 str.
           9-941]
 gi|82615098|emb|CAJ10027.1| Argininosuccinate synthase [Brucella melitensis biovar Abortus
           2308]
 gi|148370857|gb|ABQ60836.1| argininosuccinate synthase [Brucella ovis ATCC 25840]
 gi|161334873|gb|ABX61178.1| argininosuccinate synthase [Brucella canis ATCC 23365]
 gi|163673072|gb|ABY37183.1| argininosuccinate synthase [Brucella suis ATCC 23445]
 gi|189018905|gb|ACD71627.1| Argininosuccinate synthase [Brucella abortus S19]
 gi|225639980|gb|ACN99893.1| argininosuccinate synthase [Brucella melitensis ATCC 23457]
 gi|237789384|gb|EEP63594.1| argininosuccinate synthase [Brucella abortus str. 2308 A]
 gi|255998698|gb|ACU47097.1| argininosuccinate synthase [Brucella microti CCM 4915]
 gi|260096460|gb|EEW80336.1| argininosuccinate synthase [Brucella abortus NCTC 8038]
 gi|260153169|gb|EEW88261.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. 16M]
 gi|260156798|gb|EEW91878.1| argininosuccinate synthase [Brucella suis bv. 4 str. 40]
 gi|260669472|gb|EEX56412.1| argininosuccinate synthase [Brucella abortus bv. 4 str. 292]
 gi|260671310|gb|EEX58131.1| argininosuccinate synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676038|gb|EEX62859.1| argininosuccinate synthase [Brucella abortus bv. 6 str. 870]
 gi|260874482|gb|EEX81551.1| argininosuccinate synthase [Brucella abortus bv. 9 str. C68]
 gi|260916812|gb|EEX83673.1| argininosuccinate synthase [Brucella abortus bv. 3 str. Tulya]
 gi|260919888|gb|EEX86541.1| argininosuccinate synthase [Brucella ceti B1/94]
 gi|260923166|gb|EEX89734.1| argininosuccinate synthase [Brucella ceti M13/05/1]
 gi|261293766|gb|EEX97262.1| argininosuccinate synthase [Brucella ceti M644/93/1]
 gi|261295956|gb|EEX99452.1| argininosuccinate synthase [Brucella pinnipedialis B2/94]
 gi|261300171|gb|EEY03668.1| argininosuccinate synthase [Brucella neotomae 5K33]
 gi|261303734|gb|EEY07231.1| argininosuccinate synthase [Brucella pinnipedialis M163/99/10]
 gi|261741153|gb|EEY29079.1| argininosuccinate synthase [Brucella suis bv. 5 str. 513]
 gi|261745716|gb|EEY33642.1| argininosuccinate synthase [Brucella suis bv. 3 str. 686]
 gi|262551734|gb|EEZ07724.1| argininosuccinate synthase [Brucella ceti M490/95/1]
 gi|262765001|gb|EEZ10922.1| argininosuccinate synthase [Brucella melitensis bv. 3 str. Ether]
 gi|263003346|gb|EEZ15639.1| argininosuccinate synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095329|gb|EEZ18956.1| argininosuccinate synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660001|gb|EEZ30262.1| argininosuccinate synthase [Brucella pinnipedialis M292/94/1]
 gi|264661846|gb|EEZ32107.1| argininosuccinate synthase [Brucella sp. 83/13]
 gi|294820068|gb|EFG37067.1| argininosuccinate synthase [Brucella sp. NVSL 07-0026]
 gi|297174646|gb|EFH33993.1| argininosuccinate synthase [Brucella abortus bv. 5 str. B3196]
 gi|306273185|gb|EFM55076.1| argininosuccinate synthase [Brucella sp. BO1]
 gi|306287265|gb|EFM58753.1| argininosuccinate synthase [Brucella sp. BO2]
 gi|306406021|gb|EFM62272.1| argininosuccinate synthase [Brucella sp. NF 2653]
 gi|326408087|gb|ADZ65152.1| Argininosuccinate synthase [Brucella melitensis M28]
 gi|326537803|gb|ADZ86018.1| argininosuccinate synthase [Brucella melitensis M5-90]
          Length = 406

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  AR+  + + +   ++ D  E F    + P   + A  E          R +    L+
Sbjct: 48  LEPARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLI 107

Query: 131 SVTRQLGADVLATG 144
            + ++ GAD +A G
Sbjct: 108 DIAKKTGADAIAHG 121


>gi|319901314|ref|YP_004161042.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides helcogenes P
           36-108]
 gi|319416345|gb|ADV43456.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides helcogenes P
           36-108]
          Length = 517

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL R  G ++  + +         ++        
Sbjct: 206 ELKEQVGNDRVILGLSGGVDSSVAAVLLNRAIGKNLTCIFV----DHGLLRKDEFKNVMH 261

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D       C  + ++    D   +F              G T     +  R +   D + 
Sbjct: 262 DYE-----C--LGLNVIGVDASAKFFKD---------LEGVT---DPEQKRKIIGRDFIE 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V     A  +    ++       D  +   I  + +    +    +    ++    L  P
Sbjct: 303 VFDA-EAHKITDARWLAQGTIYPDRIESLNITGKTIKSHHN----VGGLPEEMNLKLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LQWLFKDEVRRVGRELGMP 376


>gi|223039865|ref|ZP_03610149.1| ExsB protein [Campylobacter rectus RM3267]
 gi|222878874|gb|EEF13971.1| ExsB protein [Campylobacter rectus RM3267]
          Length = 223

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 27/200 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V  MSGG+DS++ A L KR GY+++ +              G     ++     ++C
Sbjct: 2   KKAVCIMSGGMDSTLCAVLAKRAGYEIVALHF----------DYGQRTMEREKLAFEQIC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAG--------ETPLPCVDCNRTVKFSDLLSV 132
           + I  +    + +  F  ++     +             +TP   V     +  S   ++
Sbjct: 52  ERIG-ALKKVNLDAHFIASIGGNALTDENLAIRKDGAKPDTPSTYVPFRNGIFISIAAAL 110

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + GA  L  G        V +DG      C    + + +S     T++     +  PL
Sbjct: 111 AEKEGAQALYIG-------IVEEDGSGYPD-CTADFIAKIESAVNAGTSKDFSLRIETPL 162

Query: 193 GDMKKESVRDLAREMGLDIA 212
            ++ K  +   + E G  + 
Sbjct: 163 VNLSKAGIVRKSLEAGSPLE 182


>gi|158338517|ref|YP_001519694.1| hypothetical protein AM1_5419 [Acaryochloris marina MBIC11017]
 gi|158308758|gb|ABW30375.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 274

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++A SGG+DS++VA +     +DV+G     Y +   +    S    +D  DA+    
Sbjct: 19  RALIAYSGGIDSTLVAKVA----FDVLG-----YKALAITANSPS-LLPEDFEDAQVQAA 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +SH V    E                      C  C   + +  L  +  + G   +
Sbjct: 69  DIGISHEVVATHEMDNPNYTTNPV---------NRCYFCKSEL-YDALKPLASEWGYAYV 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      +   D    R  +    +                    R PL +  + K  
Sbjct: 119 VDG------VNADDLQDYRPGIRAAKERG-----------------TRSPLAEVGITKLE 155

Query: 200 VRDLAREMGLDIADKS 215
           VR++++ +GL   DK 
Sbjct: 156 VREISKLLGLPWWDKP 171


>gi|325916006|ref|ZP_08178299.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537816|gb|EGD09519.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas vesicatoria ATCC
           35937]
          Length = 521

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V++ +SGGVDSSVVAALL R     IG      +              Q+      +
Sbjct: 223 DDEVILGLSGGVDSSVVAALLHRA----IG------DKLNCVFVDTGLLRWQEGDQVMAM 272

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
             + + V     +  +R+              G   +   +  R +  +  + +  +   
Sbjct: 273 FAEHMGVKVIRVNAADRYFAK---------LEG---VSDPEAKRKIIGNLFVDIFDEESG 320

Query: 137 ---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A  LA G      +        +  + +           +    +     L  PL 
Sbjct: 321 KLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEHMKLGLVEPLR 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L  E+GL 
Sbjct: 374 ELFKDEVRRLGVELGLP 390


>gi|25028088|ref|NP_738142.1| argininosuccinate synthase [Corynebacterium efficiens YS-314]
 gi|259505640|ref|ZP_05748542.1| argininosuccinate synthase [Corynebacterium efficiens YS-314]
 gi|29336736|sp|Q8FTM9|ASSY_COREF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|23493372|dbj|BAC18342.1| argininosuccinate synthetase [Corynebacterium efficiens YS-314]
 gi|259166771|gb|EEW51325.1| argininosuccinate synthase [Corynebacterium efficiens YS-314]
          Length = 401

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K  G +V+ V+L L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLSKMTGGEVVAVSLDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   +        P V   +R +    L+   ++ G 
Sbjct: 52  LDCGAVESIVIDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVQAAKEHGG 111

Query: 139 DVLATG 144
             ++ G
Sbjct: 112 THVSHG 117


>gi|23500989|ref|NP_697116.1| argininosuccinate synthase [Brucella suis 1330]
 gi|30172863|sp|Q8G376|ASSY_BRUSU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|23346849|gb|AAN29031.1| argininosuccinate synthase [Brucella suis 1330]
          Length = 406

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +  AR+  + + +   ++ D  E F    + P   + A  E          R +    L+
Sbjct: 48  LEPARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLI 107

Query: 131 SVTRQLGADVLATG 144
            + ++ GAD +A G
Sbjct: 108 DIAKKTGADAIAHG 121


>gi|13473685|ref|NP_105253.1| argininosuccinate synthase [Mesorhizobium loti MAFF303099]
 gi|24211524|sp|Q98E81|ASSY_RHILO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|14024436|dbj|BAB51039.1| argininosuccinate synthase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G +
Sbjct: 1   MSKTKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGGE 47

Query: 73  VYDARRVCDTINVS-HYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +  AR+  + + +    + D  E F  + V   F ++     T L      R +    L+
Sbjct: 48  LEPARKKAEMMGIKDIRIVDVREEFVADFVFPMFRANTVYEGTYLLGTSIARPLISKHLV 107

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 108 DIARETGADAIAHG 121


>gi|294782577|ref|ZP_06747903.1| NAD+ synthetase [Fusobacterium sp. 1_1_41FAA]
 gi|294481218|gb|EFG28993.1| NAD+ synthetase [Fusobacterium sp. 1_1_41FAA]
          Length = 258

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 50/194 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++ A LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALAAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY-AAGETPLPCVDCNRTV--KFSDLLSVTRQL 136
            + + +   V +         I     +Y    + P      N+    + S L   + + 
Sbjct: 79  VEDLGIDSKVIE---------ITDMIDAYFKNEKDPTSLRMGNKMARERMSILYDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDAACAFNPIGDLY 164

Query: 197 KESVRDLAREMGLD 210
           K +V +L+R + + 
Sbjct: 165 KTNVWELSRYLNIP 178


>gi|260439327|ref|ZP_05793143.1| GMP synthase [Butyrivibrio crossotus DSM 2876]
 gi|292808337|gb|EFF67542.1| GMP synthase [Butyrivibrio crossotus DSM 2876]
          Length = 514

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++A+SGGVDSSV A LL R  G  +  V     +     K +G         + + 
Sbjct: 215 NGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKNEGDEVEQVFGPNGQ- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +++    + +ER+ + +                 +     ++        +++GA
Sbjct: 271 ----FDLNFIRVNAQERYYSKLAGVTEPERKRK------IIGEEFIRV--FEEEAKKIGA 318

Query: 139 -DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +  G  G+          + +               ++  PL ++ K
Sbjct: 319 VDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPLRNLFK 370

Query: 198 ESVRDLAREMGLD 210
           + VR    E+G+ 
Sbjct: 371 DEVRKAGLELGIP 383


>gi|251778793|ref|ZP_04821713.1| GMP synthase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083108|gb|EES48998.1| GMP synthase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 513

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL R  G  +  V     +     K +G         + + 
Sbjct: 215 NGKVLCALSGGVDSSVAAVLLSRAVGKQLTCVF---VDHGLLRKNEGDEVEEIFGPNGQ- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + +ERF         +     E     +     ++        +++G 
Sbjct: 271 ----YDLNFIRVNAQERFYEK-----LAGIEEPEQK-RKIIGEEFIRV--FEEEAKKIGT 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G        V + G  +  + +           +          ++  PL  + 
Sbjct: 319 VDYLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDYVDFKEIIEPLRLLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+G+ 
Sbjct: 369 KDEVRKAGLELGIP 382


>gi|187932912|ref|YP_001884624.1| GMP synthase [Clostridium botulinum B str. Eklund 17B]
 gi|259647750|sp|B2TIX3|GUAA_CLOBB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187721065|gb|ACD22286.1| GMP synthase [Clostridium botulinum B str. Eklund 17B]
          Length = 513

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL R  G  +  V     +     K +G         + + 
Sbjct: 215 NGKVLCALSGGVDSSVAAVLLSRAVGKQLTCVF---VDHGLLRKNEGDEVEEIFGPNGQ- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + +ERF         +     E     +     ++        +++G 
Sbjct: 271 ----YDLNFIRVNAQERFYEK-----LAGIEEPEQK-RKIIGEEFIRV--FEEEAKKIGT 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G        V + G  +  + +           +          ++  PL  + 
Sbjct: 319 VDYLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDYVDFKEIIEPLRLLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+G+ 
Sbjct: 369 KDEVRKAGLELGIP 382


>gi|319780688|ref|YP_004140164.1| argininosuccinate synthase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166576|gb|ADV10114.1| argininosuccinate synthase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 407

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV++ SGG+D+S++   L+   G +VI  T                  G++
Sbjct: 1   MSKTKDIKKVVLSYSGGLDTSIILKWLQTEFGAEVITFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINVS-HYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +  ARR  + + +    + D  E F  + V   F ++     T L      R +    L+
Sbjct: 48  LEPARRKAEMMGIKDIRIVDVREEFVADFVFPMFRANTVYEGTYLLGTSIARPLISKHLV 107

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 108 DIARETGADAIAHG 121


>gi|218681025|ref|ZP_03528922.1| argininosuccinate synthase [Rhizobium etli CIAT 894]
          Length = 407

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|254430367|ref|ZP_05044070.1| GMP synthase [Cyanobium sp. PCC 7001]
 gi|197624820|gb|EDY37379.1| GMP synthase [Cyanobium sp. PCC 7001]
          Length = 548

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 29/204 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   + RV++A+SGGVDSS +A LL +     IG  L      +   RKG      +
Sbjct: 237 DVRRQVGEKRVLLALSGGVDSSTLAFLLHKA----IGDQLTCMFIDQGFMRKGEPEFLVE 292

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
            +D        +++    +  ERF              G T     +  R +        
Sbjct: 293 FFD-----KRFHINVEYINARERFLAR---------LEGVT---DPEEKRKLIGTEFIRV 335

Query: 129 LLSVTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               +++LG  D LA G  Y       G +   +      + ++   +  +    +    
Sbjct: 336 FEEESKRLGPFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHN--VGGLPKDLQF 393

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR + R +GL 
Sbjct: 394 KLVEPLRKLFKDEVRKVGRSLGLP 417


>gi|167747719|ref|ZP_02419846.1| hypothetical protein ANACAC_02440 [Anaerostipes caccae DSM 14662]
 gi|167653081|gb|EDR97210.1| hypothetical protein ANACAC_02440 [Anaerostipes caccae DSM 14662]
          Length = 513

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+ A+SGGVDSSV A +L +  G  +  V      L+  N     +         D+
Sbjct: 215 DGKVLCALSGGVDSSVAAVMLAKAVGKQLTCVFVDHGLLR-KNEGDEVEAVFGPEGPYDL 273

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                            + ++RF         +     E     +     ++        
Sbjct: 274 N------------FIRVNVQDRFYEK-----LAGVEEPEQK-RKIIGEEFIRV--FEEEA 313

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFP 191
           +++G  D L  G        V + G  +    +           +          ++  P
Sbjct: 314 KKIGSVDFLVQG---TIYPDVVESGVGKSATIKSHHN-------VGGLPDYVDFKEIIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR   RE+G+ 
Sbjct: 364 LRDLFKDEVRQAGRELGIP 382


>gi|153938867|ref|YP_001390531.1| hypothetical protein CLI_1265 [Clostridium botulinum F str.
           Langeland]
 gi|152934763|gb|ABS40261.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. Langeland]
 gi|295318612|gb|ADF98989.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. 230613]
          Length = 266

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+    LL +   + +G      ++  +           ++ +A+ + + 
Sbjct: 18  VAVAFSGGVDST----LLLKAAKEALG------DNAISITVVSPYIPKWEIEEAKELANN 67

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 68  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKENGVK 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 113 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 151

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++ +GL+  +K      C + +  Y   +K 
Sbjct: 152 IRTLSKCLGLETWNKP--AYACLLSRIPYNQEIKE 184


>gi|322694630|gb|EFY86455.1| GMP synthase [Metarhizium acridum CQMa 102]
          Length = 561

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 64/212 (30%), Gaps = 56/212 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ A+SGGVDSSV A L+K      IG      L ++     R   C   ++  D     
Sbjct: 215 VIGAVSGGVDSSVAAKLMKEA----IGDRFHAILVDTGLM--RLNECEQVKETLD----- 263

Query: 81  DTINVSHYVFDYEERFRNA---VIVP----------FAS---------SYAAGETPLPCV 118
             + ++  V D  + F +    V  P          F              A  TP    
Sbjct: 264 KHLGINLTVVDGSQLFLDRLAGVTEPEAKRKIIGGTFIDLFEIEALRIEKEAENTP---- 319

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
              R  K    L          L                  +          R Q+    
Sbjct: 320 ---RAGKVEWFLQ-------GTLYADIVESLSFKGAASSTIKSHHNAGGLPARMQN---- 365

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              + QL  L  PL ++ K+ VR   R++ + 
Sbjct: 366 --GEAQL-KLLEPLRELFKDEVRAFGRQLQIH 394


>gi|317473498|ref|ZP_07932790.1| GMP synthase domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899009|gb|EFV21031.1| GMP synthase domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 513

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+ A+SGGVDSSV A +L +  G  +  V      L+  N     +         D+
Sbjct: 215 DGKVLCALSGGVDSSVAAVMLAKAVGKQLTCVFVDHGLLR-KNEGDEVEAVFGPEGPYDL 273

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                            + ++RF         +     E     +     ++        
Sbjct: 274 N------------FIRVNVQDRFYEK-----LAGVEEPEQK-RKIIGEEFIRV--FEEEA 313

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFP 191
           +++G  D L  G        V + G  +    +           +          ++  P
Sbjct: 314 KKIGSVDFLVQG---TIYPDVVESGVGKSATIKSHHN-------VGGLPDYVDFKEIIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR   RE+G+ 
Sbjct: 364 LRDLFKDEVRQAGRELGIP 382


>gi|255526450|ref|ZP_05393361.1| GMP synthase, large subunit [Clostridium carboxidivorans P7]
 gi|296184824|ref|ZP_06853235.1| GMP synthase (glutamine-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|255509832|gb|EET86161.1| GMP synthase, large subunit [Clostridium carboxidivorans P7]
 gi|296050606|gb|EFG90029.1| GMP synthase (glutamine-hydrolyzing) [Clostridium carboxidivorans
           P7]
          Length = 510

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ R  G  +  +     +     K +G             
Sbjct: 215 DKKVICALSGGVDSSVAAVLVHRAIGKQLTCIF---VDHGLLRKDEGDQVETIFK----- 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +++    + ++RF   +                 +     ++         +LG 
Sbjct: 267 --KQFDMNLIRVNAKDRFLGKLAGVSDPERKRK------IIGEEFIRV--FEEEANKLGE 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             ++          V + G       +           +    +     L  PL ++ K+
Sbjct: 317 --ISFLVQGTIYPDVVESGTNTSATIKSHHN-------VGGLPEDMQFKLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 368 EVRAVGEELGIP 379


>gi|188589233|ref|YP_001919810.1| GMP synthase [Clostridium botulinum E3 str. Alaska E43]
 gi|259647751|sp|B2UZ05|GUAA_CLOBA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188499514|gb|ACD52650.1| GMP synthase [Clostridium botulinum E3 str. Alaska E43]
          Length = 513

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL R  G  +  V     +     K +G         + + 
Sbjct: 215 NGKVLCALSGGVDSSVAAVLLSRAVGKQLTCVF---VDHGLLRKNEGDEVEEIFGPNGQ- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + +ERF         +     E     +     ++        +++G 
Sbjct: 271 ----YDLNFIRVNAQERFYEK-----LAGIEEPEQK-RKIIGEEFIRV--FEEEAKKIGT 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G        V + G  +  + +           +          ++  PL  + 
Sbjct: 319 VDYLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDYVDFKEIIEPLRLLF 368

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+G+ 
Sbjct: 369 KDEVRKAGLELGIP 382


>gi|228983515|ref|ZP_04143723.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776222|gb|EEM24580.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|224418823|ref|ZP_03656829.1| argininosuccinate synthase [Helicobacter canadensis MIT 98-5491]
 gi|253828188|ref|ZP_04871073.1| argininosuccinate synthase [Helicobacter canadensis MIT 98-5491]
 gi|313142341|ref|ZP_07804534.1| argininosuccinate synthase [Helicobacter canadensis MIT 98-5491]
 gi|253511594|gb|EES90253.1| argininosuccinate synthase [Helicobacter canadensis MIT 98-5491]
 gi|313131372|gb|EFR48989.1| argininosuccinate synthase [Helicobacter canadensis MIT 98-5491]
          Length = 405

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 30/142 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++K     +VV+A SGG+D+SV+   L    G +V+  T                  G++
Sbjct: 1   MEKTKDIKKVVLAYSGGLDTSVILKWLGDTYGCEVVTFT-------------ADIGQGEE 47

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNR 122
           V  AR     + +     ++ D  E F    + P           Y  G +    +   R
Sbjct: 48  VEPARAKALKLGIKPQNIFIDDLREEFIRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR 107

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
                 L+ + R++GAD +A G
Sbjct: 108 ------LVEIAREVGADAIAHG 123


>gi|206896027|ref|YP_002246488.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738644|gb|ACI17722.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Coprothermobacter proteolyticus DSM
           5265]
          Length = 511

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 36/193 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDS+V A L  R     +G   LQ        +R       +D    R +  
Sbjct: 219 VLGALSGGVDSAVAAVLTHRA----LGCGRLQCLYIDTGLQR------AEDEAHVRNLSK 268

Query: 82  TINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
            + +   V D +ERF      VI P              +  N  ++        R LG 
Sbjct: 269 HLGLKIKVVDAKERFLKALEGVIDP---EQKRK------IIGNLFIQV--FEEEARNLGH 317

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G+    + +           +    Q     L  PL  + K
Sbjct: 318 FDFLLQG---TLYPDVIESGEGSASVIKSHHN-------VGGLPQSLGLKLLEPLRWLYK 367

Query: 198 ESVRDLAREMGLD 210
           + VR++ R +G+ 
Sbjct: 368 DEVRNMGRWLGIP 380


>gi|315923795|ref|ZP_07920025.1| GMP synthase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622915|gb|EFV02866.1| GMP synthase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 529

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 28/204 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +     RV++ +SGGVDS+V A LL R  G  +  V     +     K +G       
Sbjct: 216 LREKIGSDRVLLGLSGGVDSTVAAVLLSRAVGKQLTCVF---VDHGLMRKNEGDEVEAVF 272

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D        +++    +  +++  A   VI P        E     +       F   
Sbjct: 273 GPDG-----DFDLNFIRVNAGDQYFKALKGVIDP--------EQKRKIIGALFVEIFGAE 319

Query: 130 LSV-TRQLGADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 Q G   +A G  +       VG  G   +       L ++    +     ++  
Sbjct: 320 AKKLAAQGGFKYMAQGTIYPDVVESGVGSGGAVIKSHHNVGGLPKE---MVTDLGFEETP 376

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
               PL D+ K+ VR    E+G+ 
Sbjct: 377 --IEPLRDLFKDEVRRAGLELGIP 398


>gi|229194645|ref|ZP_04321441.1| GMP synthase, large subunit [Bacillus cereus m1293]
 gi|228588838|gb|EEK46860.1| GMP synthase, large subunit [Bacillus cereus m1293]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|240143280|ref|ZP_04741881.1| GMP synthase [Roseburia intestinalis L1-82]
 gi|257204758|gb|EEV03043.1| GMP synthase [Roseburia intestinalis L1-82]
          Length = 524

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 208 EIREKVGNGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKNEGDEVEEV 264

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              + +      +++    + ++R+   +       +         +     ++      
Sbjct: 265 FGPNGQ-----FDLNFIRVNAQDRYYGKLAGVTEPEHKRK------IIGEEFIRV--FEE 311

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLC 186
             +++GA D LA G      +  G  G+    +       +    D              
Sbjct: 312 EAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD------------FK 359

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL ++ K+ VR    E+G+ 
Sbjct: 360 EIIEPLRNLFKDEVRKAGLELGIP 383


>gi|49476755|ref|YP_034594.1| GMP synthase [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|81397417|sp|Q6HPC6|GUAA_BACHK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49328311|gb|AAT58957.1| GMP synthase [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|229028112|ref|ZP_04184258.1| GMP synthase, large subunit [Bacillus cereus AH1271]
 gi|229159423|ref|ZP_04287442.1| GMP synthase, large subunit [Bacillus cereus R309803]
 gi|228624053|gb|EEK80860.1| GMP synthase, large subunit [Bacillus cereus R309803]
 gi|228733203|gb|EEL84039.1| GMP synthase, large subunit [Bacillus cereus AH1271]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|229171103|ref|ZP_04298700.1| GMP synthase, large subunit [Bacillus cereus MM3]
 gi|228612376|gb|EEK69601.1| GMP synthase, large subunit [Bacillus cereus MM3]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|91772989|ref|YP_565681.1| hypothetical protein Mbur_0991 [Methanococcoides burtonii DSM 6242]
 gi|91712004|gb|ABE51931.1| PP-loop family protein [Methanococcoides burtonii DSM 6242]
          Length = 302

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 19/130 (14%)

Query: 23  VVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + VA+SGG DS V+  LL      R   +++ +T+             +    + +  AR
Sbjct: 52  IAVALSGGKDSVVLLYLLHKIFGVRRDIEIVALTI---------DEGIAGYREETLAKAR 102

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++   + + H V  +++ +   +    A     G     C  C    K S +  +  ++G
Sbjct: 103 KLTSELGIRHIVRSFKDEYDKTLDELTAQERKLG----ACSYCGVLRK-SLMNKIANEIG 157

Query: 138 ADVLATGHYI 147
           A+ LATGH +
Sbjct: 158 ANKLATGHNL 167


>gi|71276202|ref|ZP_00652481.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71900461|ref|ZP_00682592.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|170730694|ref|YP_001776127.1| GMP synthase [Xylella fastidiosa M12]
 gi|226739769|sp|B0U3R8|GUAA_XYLFM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71162963|gb|EAO12686.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71729767|gb|EAO31867.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|167965487|gb|ACA12497.1| glutamine amidotransferase [Xylella fastidiosa M12]
          Length = 522

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 27/192 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 227 VILGLSGGVDSSVVAALLHKAIGSQLTCVF---------VDTGLLRWGEGDQVMAMFE-E 276

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADV 140
            + V+    +   R+ +A+   +             +  N  +  F +    +++  A  
Sbjct: 277 HMGVNVVRINAASRYFDALQGVYDPEAKRK------IIGNLFIQIFEE--EASKRKQAKW 328

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +        +  + +           +    +Q    +  PL ++ K+ V
Sbjct: 329 LAQGTIYPDVIESAGSKTGKAHVIKSHHN-------VGGLPEQMTLGMVEPLRELFKDEV 381

Query: 201 RDLAREMGLDIA 212
           R L   +GL  A
Sbjct: 382 RRLGVALGLPHA 393


>gi|325269878|ref|ZP_08136488.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella multiformis DSM 16608]
 gi|324987851|gb|EGC19824.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella multiformis DSM 16608]
          Length = 456

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 26/126 (20%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVT--LQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VA+SGG DS V   L LK  GY V  V    QL         +            + +C
Sbjct: 22  LVALSGGADS-VALLLTLKELGYRVEAVHCNFQLRGEESLHDERF----------CQELC 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
              N+  +   +              SYA     +      R +++     +   LGAD 
Sbjct: 71  RRENIPLHKVHF-----------DTRSYATLH-KVSIEMAARDLRYHYFFQLKETLGADA 118

Query: 141 LATGHY 146
           +  GH+
Sbjct: 119 VCVGHH 124


>gi|289192120|ref|YP_003458061.1| Queuosine synthesis-like protein [Methanocaldococcus sp. FS406-22]
 gi|288938570|gb|ADC69325.1| Queuosine synthesis-like protein [Methanocaldococcus sp. FS406-22]
          Length = 260

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 55/208 (26%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
               + +DK P     VVA SGGVDSS    + K            ++N +  S      
Sbjct: 53  EFYKISIDKKPSA---VVAFSGGVDSSTSTIIAK-----------HIFNVKAVSCYSKYI 98

Query: 68  CAGQDVYDARRVCDTINVSHYVFD--YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              +    A+ V   I V     D   EE +   V   F           PC  C++ V 
Sbjct: 99  MTDEMKETAKNVAKKIGVDLEFIDIDLEEVYEGVVNGRFH----------PCGRCHK-VI 147

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
            + +++  + + A+ +  G  +         +D   R  +          S+F       
Sbjct: 148 ENAIINYAKSIDAEFVIFGDLLAFGYLALYKEDEIFRFNL---------PSFFA------ 192

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDI 211
                      + K+  R++ +  G+++
Sbjct: 193 -----------LTKDEEREILKNNGIEL 209


>gi|261252188|ref|ZP_05944761.1| GMP synthase [glutamine-hydrolyzing] [Vibrio orientalis CIP 102891]
 gi|260935579|gb|EEX91568.1| GMP synthase [glutamine-hydrolyzing] [Vibrio orientalis CIP 102891]
          Length = 517

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF         ++      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LTALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLENAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|229094972|ref|ZP_04225971.1| GMP synthase, large subunit [Bacillus cereus Rock3-29]
 gi|229113925|ref|ZP_04243354.1| GMP synthase, large subunit [Bacillus cereus Rock1-3]
 gi|228669525|gb|EEL24938.1| GMP synthase, large subunit [Bacillus cereus Rock1-3]
 gi|228688442|gb|EEL42321.1| GMP synthase, large subunit [Bacillus cereus Rock3-29]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|148273738|ref|YP_001223299.1| GMP synthase [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147831668|emb|CAN02637.1| GMP synthase [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 526

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 41/203 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDS+V AA++ R  G  +  V +         +        +D   A  
Sbjct: 221 DAKVICGLSGGVDSAVAAAIVHRAVGDQLTCVFV----DHGLLRHDERRQVEEDYVAAT- 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
                 V     D  ++F +            G T +   +  R +   + +        
Sbjct: 276 -----GVRLVTVDAADQFLD------------GLTGVTDPEAKRKIIGREFIRSFEGAAE 318

Query: 135 QLGADVLATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L  +  A G  IR  +        V   G       +           +    +    +
Sbjct: 319 ALVLEAKADGEPIRFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLKFE 371

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + RE+GL 
Sbjct: 372 LVEPLRTLFKDEVRAIGRELGLP 394


>gi|88603768|ref|YP_503946.1| GMP synthase subunit B [Methanospirillum hungatei JF-1]
 gi|88189230|gb|ABD42227.1| GMP synthase (glutamine-hydrolyzing) [Methanospirillum hungatei
           JF-1]
          Length = 305

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 41/201 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +     +VV+A+SGGVDSSV A L  R  G  +I +            RKG       
Sbjct: 15  IQEESNGEKVVIALSGGVDSSVCAELASRAIGERLIPIY-----VDTGLMRKGET----- 64

Query: 73  VYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDL 129
               +R+ +    +   V +  + F          +      P     +   R ++    
Sbjct: 65  ----KRISEIFGHLGLKVVNAADEF--------LDALEGESDPEKKRKIVGERFIRV--F 110

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                  GA  L  G        +  +G  +                       Q   + 
Sbjct: 111 EREATATGAQYLLQG--TIYPDCIESEGGIKSHHNVGGLPLT-----------MQFQGVI 157

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR++A  +GL 
Sbjct: 158 EPLRDLYKDEVREVAEALGLP 178


>gi|15791215|ref|NP_281039.1| argininosuccinate synthase [Halobacterium sp. NRC-1]
 gi|169236971|ref|YP_001690171.1| argininosuccinate synthase [Halobacterium salinarum R1]
 gi|30172950|sp|Q9HMQ2|ASSY_HALSA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|10581841|gb|AAG20519.1| argininosuccinate synthetase [Halobacterium sp. NRC-1]
 gi|167728037|emb|CAP14825.1| argininosuccinate synthase [Halobacterium salinarum R1]
          Length = 396

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 68/196 (34%), Gaps = 35/196 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V +A SGG+D++V   LLK + GYD VIGVT+ +              A           
Sbjct: 6   VALAFSGGLDTTVCVPLLKEEYGYDDVIGVTVDVGQPDAEFAAARETAAA---------- 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V H+V D    F         ++      PL      R V    +LSV    G   
Sbjct: 56  --LGVEHHVVDATAEFAALCFDAVRANATYQGYPLGTALA-RPVIADAILSVAEAEGCAA 112

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G         G+D  R   + R  D +           +         LG + +E  
Sbjct: 113 LAHG-----CTGKGNDQLRFEAVWRASDHD-----VCAPVRE---------LG-LTREWE 152

Query: 201 RDLAREMGLDIADKSD 216
            + A E  L +   ++
Sbjct: 153 IEYAAERDLPVEAGNE 168


>gi|47567509|ref|ZP_00238221.1| GMP synthase [Bacillus cereus G9241]
 gi|49183286|ref|YP_026538.1| GMP synthase [Bacillus anthracis str. Sterne]
 gi|52144972|ref|YP_081857.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus E33L]
 gi|65317699|ref|ZP_00390658.1| COG0519: GMP synthase, PP-ATPase domain/subunit [Bacillus anthracis
           str. A2012]
 gi|118476016|ref|YP_893167.1| GMP synthase [Bacillus thuringiensis str. Al Hakam]
 gi|167640155|ref|ZP_02398422.1| GMP synthase [Bacillus anthracis str. A0193]
 gi|170687797|ref|ZP_02879012.1| GMP synthase [Bacillus anthracis str. A0465]
 gi|170709230|ref|ZP_02899652.1| GMP synthase [Bacillus anthracis str. A0389]
 gi|177655761|ref|ZP_02937036.1| GMP synthase [Bacillus anthracis str. A0174]
 gi|190567444|ref|ZP_03020358.1| GMP synthase [Bacillus anthracis Tsiankovskii-I]
 gi|196036858|ref|ZP_03104246.1| GMP synthase [Bacillus cereus W]
 gi|196041138|ref|ZP_03108434.1| GMP synthase [Bacillus cereus NVH0597-99]
 gi|196046204|ref|ZP_03113431.1| GMP synthase [Bacillus cereus 03BB108]
 gi|225862311|ref|YP_002747689.1| GMP synthase [Bacillus cereus 03BB102]
 gi|227812935|ref|YP_002812944.1| GMP synthase [Bacillus anthracis str. CDC 684]
 gi|228912998|ref|ZP_04076640.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925514|ref|ZP_04088606.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931760|ref|ZP_04094660.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944066|ref|ZP_04106448.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089392|ref|ZP_04220665.1| GMP synthase, large subunit [Bacillus cereus Rock3-42]
 gi|229154027|ref|ZP_04282155.1| GMP synthase, large subunit [Bacillus cereus ATCC 4342]
 gi|229182657|ref|ZP_04309901.1| GMP synthase, large subunit [Bacillus cereus BGSC 6E1]
 gi|229603516|ref|YP_002864893.1| GMP synthase [Bacillus anthracis str. A0248]
 gi|81689732|sp|Q63GV4|GUAA_BACCZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738382|sp|A0R8W7|GUAA_BACAH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254799668|sp|C3PBL1|GUAA_BACAA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254799669|sp|C3L508|GUAA_BACAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800084|sp|C1EUB4|GUAA_BACC3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|47555911|gb|EAL14250.1| GMP synthase [Bacillus cereus G9241]
 gi|49177213|gb|AAT52589.1| GMP synthase [Bacillus anthracis str. Sterne]
 gi|51978441|gb|AAU19991.1| GMP synthase [Bacillus cereus E33L]
 gi|118415241|gb|ABK83660.1| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis str.
           Al Hakam]
 gi|167511966|gb|EDR87345.1| GMP synthase [Bacillus anthracis str. A0193]
 gi|170125863|gb|EDS94768.1| GMP synthase [Bacillus anthracis str. A0389]
 gi|170668324|gb|EDT19072.1| GMP synthase [Bacillus anthracis str. A0465]
 gi|172079990|gb|EDT65092.1| GMP synthase [Bacillus anthracis str. A0174]
 gi|190561571|gb|EDV15542.1| GMP synthase [Bacillus anthracis Tsiankovskii-I]
 gi|195990540|gb|EDX54520.1| GMP synthase [Bacillus cereus W]
 gi|196022949|gb|EDX61629.1| GMP synthase [Bacillus cereus 03BB108]
 gi|196028073|gb|EDX66684.1| GMP synthase [Bacillus cereus NVH0597-99]
 gi|225787406|gb|ACO27623.1| GMP synthase [Bacillus cereus 03BB102]
 gi|227006016|gb|ACP15759.1| GMP synthase [Bacillus anthracis str. CDC 684]
 gi|228600826|gb|EEK58402.1| GMP synthase, large subunit [Bacillus cereus BGSC 6E1]
 gi|228629447|gb|EEK86146.1| GMP synthase, large subunit [Bacillus cereus ATCC 4342]
 gi|228693941|gb|EEL47631.1| GMP synthase, large subunit [Bacillus cereus Rock3-42]
 gi|228815616|gb|EEM61855.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827909|gb|EEM73643.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834152|gb|EEM79697.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846652|gb|EEM91662.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229267924|gb|ACQ49561.1| GMP synthase [Bacillus anthracis str. A0248]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|327314588|ref|YP_004330025.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289]
 gi|326945281|gb|AEA21166.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289]
          Length = 456

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+SGG DS V   L LK  GY +  V    +   + S+R    C        + +C  
Sbjct: 22  LVALSGGADS-VCLLLCLKELGYRIEAVHCNFHLRGEESQRDEQYC--------QELCVR 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+  +               F +   A +  +      R++++     +   L AD + 
Sbjct: 73  ENIPLH------------KAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETLAADAVC 120

Query: 143 TGHY 146
           TGH+
Sbjct: 121 TGHH 124


>gi|325856881|ref|ZP_08172379.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A]
 gi|325483254|gb|EGC86231.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A]
          Length = 456

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+SGG DS V   L LK  GY +  V    +   + S+R    C        + +C  
Sbjct: 22  LVALSGGADS-VCLLLCLKELGYRIEAVHCNFHLRGEESQRDEQYC--------QELCVR 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+  +               F +   A +  +      R++++     +   L AD + 
Sbjct: 73  ENIPLH------------KAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETLAADAVC 120

Query: 143 TGHY 146
           TGH+
Sbjct: 121 TGHH 124


>gi|229083547|ref|ZP_04215880.1| GMP synthase, large subunit [Bacillus cereus Rock3-44]
 gi|228699764|gb|EEL52416.1| GMP synthase, large subunit [Bacillus cereus Rock3-44]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|49474995|ref|YP_033036.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bartonella henselae str. Houston-1]
 gi|81648415|sp|Q6G5J3|GUAA_BARHE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49237800|emb|CAF26994.1| GMP synthetase [Bartonella henselae str. Houston-1]
          Length = 518

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 42/198 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV+  +SGGVDSSVVA LL       IG  +T  L +     K +           A+ V
Sbjct: 223 RVICGLSGGVDSSVVAVLLHEA----IGDQLTCILVDHGLMRKNE-----------AQEV 267

Query: 80  C----DTINVSHYVFDYEERFRNAV---IVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                D  N+     +    F NA+   I P       G   +   +     K       
Sbjct: 268 LTLFRDHYNIKLIHVNAANMFLNALEGEIDPEKKRKTIGRLFIEVFEEETK-KIG----- 321

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GA+ LA G  +   +        + +  +           +    ++    L  PL
Sbjct: 322 ----GAEFLAQG-TLYPDVIESISAIGKSVTIKSHHN-------VGGLPERMNMKLVEPL 369

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR L +E+GL 
Sbjct: 370 RELFKDEVRSLGKELGLP 387


>gi|271967350|ref|YP_003341546.1| argininosuccinate synthase [Streptosporangium roseum DSM 43021]
 gi|270510525|gb|ACZ88803.1| Argininosuccinate synthase [Streptosporangium roseum DSM 43021]
          Length = 399

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 62/202 (30%), Gaps = 39/202 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RVV+A SGG+D+SV    L    G +VI V                   G+D+   R+
Sbjct: 2   NDRVVLAFSGGLDTSVAIPFLAEKTGAEVIAV------------AVDVGQGGEDMEVIRK 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  E F +   VP   + A      P V   +R +    L +  ++ 
Sbjct: 50  RAIDCGAVESVVVDAREEFASDFCVPALQANALYMDRYPLVSALSRPLIVKHLAAAAKEF 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM 195
           G   ++ G                   C       DQ  F            +  P  D 
Sbjct: 110 GGTHVSHG-------------------CTGK--GNDQVRFEAGLAALFPELKVIAPARDY 148

Query: 196 --KKESVRDLAREMGLDIADKS 215
              ++     A E  L I    
Sbjct: 149 AWTRDKAIAYAEEKNLPIETSK 170


>gi|228906038|ref|ZP_04069929.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 200]
 gi|228853608|gb|EEM98374.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 200]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|228950789|ref|ZP_04112917.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808876|gb|EEM55367.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|228963346|ref|ZP_04124509.1| GMP synthase, large subunit [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796333|gb|EEM43778.1| GMP synthase, large subunit [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 526

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 231 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 276

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 277 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 325

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 326 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 375

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 376 PLNTLFKDEVRVLGSELGIP 395


>gi|218507247|ref|ZP_03505125.1| argininosuccinate synthase [Rhizobium etli Brasil 5]
          Length = 219

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|206978313|ref|ZP_03239189.1| GMP synthase [Bacillus cereus H3081.97]
 gi|217957827|ref|YP_002336371.1| GMP synthase [Bacillus cereus AH187]
 gi|222094026|ref|YP_002528078.1| gmp synthase [Bacillus cereus Q1]
 gi|229137099|ref|ZP_04265721.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST26]
 gi|206743481|gb|EDZ54912.1| GMP synthase [Bacillus cereus H3081.97]
 gi|217066941|gb|ACJ81191.1| GMP synthase [Bacillus cereus AH187]
 gi|221238076|gb|ACM10786.1| GMP synthase [Bacillus cereus Q1]
 gi|228646359|gb|EEL02571.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST26]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|121710280|ref|XP_001272756.1| argininosuccinate synthase [Aspergillus clavatus NRRL 1]
 gi|119400906|gb|EAW11330.1| argininosuccinate synthase [Aspergillus clavatus NRRL 1]
          Length = 416

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V VA SGG+D+SV+   L  +GY+V+  T                   +D    R 
Sbjct: 2   SKGKVCVAFSGGLDTSVILKWLIDEGYEVVAFT-------------ADVGQEEDFDAIRE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               +  V   + D    F   +  P  +  A  E          R V     + V ++ 
Sbjct: 49  KALKLGAVKCEIVDLRREFIEELCFPAIACNAIYENVYLLGTSLARPVIARAQIEVAKRE 108

Query: 137 GADVLATG 144
           G   ++ G
Sbjct: 109 GCFAVSHG 116


>gi|47223564|emb|CAF99173.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 411

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  VV+A SGG+D+S +   LK  GYDVI   L      +            D   A+ 
Sbjct: 1   SEGTVVLAYSGGLDTSCILVWLKEQGYDVI-TFLANVGQDE------------DFKAAKE 47

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDL 129
             +T+     ++ D    F    I P   + A  E           PC+          L
Sbjct: 48  KAETLGAKKVFIEDVRAEFVEDFIWPALQANAVYEDRYLLGTAIARPCIA-------RKL 100

Query: 130 LSVTRQLGADVLATG 144
           + +  + GA  ++ G
Sbjct: 101 VEIAVREGAQFVSHG 115


>gi|30260444|ref|NP_842821.1| GMP synthase [Bacillus anthracis str. Ames]
 gi|47777798|ref|YP_016877.2| GMP synthase [Bacillus anthracis str. 'Ames Ancestor']
 gi|167634217|ref|ZP_02392539.1| GMP synthase [Bacillus anthracis str. A0442]
 gi|218901460|ref|YP_002449294.1| GMP synthase [Bacillus cereus AH820]
 gi|254686663|ref|ZP_05150521.1| GMP synthase [Bacillus anthracis str. CNEVA-9066]
 gi|254724731|ref|ZP_05186514.1| GMP synthase [Bacillus anthracis str. A1055]
 gi|254735439|ref|ZP_05193147.1| GMP synthase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744183|ref|ZP_05201865.1| GMP synthase [Bacillus anthracis str. Kruger B]
 gi|254756031|ref|ZP_05208062.1| GMP synthase [Bacillus anthracis str. Vollum]
 gi|254761681|ref|ZP_05213699.1| GMP synthase [Bacillus anthracis str. Australia 94]
 gi|300119510|ref|ZP_07057062.1| GMP synthase [Bacillus cereus SJ1]
 gi|301051994|ref|YP_003790205.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus anthracis CI]
 gi|44887948|sp|Q81VE0|GUAA_BACAN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738383|sp|B7JM61|GUAA_BACC0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|30253765|gb|AAP24307.1| GMP synthase [Bacillus anthracis str. Ames]
 gi|47551503|gb|AAT29352.2| GMP synthase [Bacillus anthracis str. 'Ames Ancestor']
 gi|167530531|gb|EDR93246.1| GMP synthase [Bacillus anthracis str. A0442]
 gi|218540109|gb|ACK92507.1| GMP synthase [Bacillus cereus AH820]
 gi|298723100|gb|EFI63990.1| GMP synthase [Bacillus cereus SJ1]
 gi|300374163|gb|ADK03067.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus biovar anthracis str. CI]
          Length = 512

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|75762461|ref|ZP_00742326.1| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228898997|ref|ZP_04063272.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 4222]
 gi|228937552|ref|ZP_04100193.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970439|ref|ZP_04131093.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977009|ref|ZP_04137416.1| GMP synthase, large subunit [Bacillus thuringiensis Bt407]
 gi|74490054|gb|EAO53405.1| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228782719|gb|EEM30890.1| GMP synthase, large subunit [Bacillus thuringiensis Bt407]
 gi|228789288|gb|EEM37213.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822126|gb|EEM68113.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228860640|gb|EEN05025.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 4222]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|292670953|ref|ZP_06604379.1| argininosuccinate synthase [Selenomonas noxia ATCC 43541]
 gi|292647574|gb|EFF65546.1| argininosuccinate synthase [Selenomonas noxia ATCC 43541]
          Length = 404

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 58/211 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK    G +VI V              G     + V+D + 
Sbjct: 6   KKVVLAYSGGLDTSVIIPWLKEHYDGCEVIAV----------CADIGQGEELEPVHD-KA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +    +   ++ D  + F    + P           Y  G +        R V    L+ 
Sbjct: 55  LASGAS-KVHIVDLTKEFLEEYVWPTLKAGAVYEGKYLLGTSFA------RPVIAKALVE 107

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
           + ++ GAD +A G                           DQ  F    T + L     +
Sbjct: 108 IAKREGADAIAHG---------------------ATGKGNDQVRF--ELTVKALAPNLQI 144

Query: 189 RFPLGDM----KKESVRDLAREMGLDIADKS 215
             P  +     +   +   A++ G+ +A+ +
Sbjct: 145 IAPWREWDLDSRSAEI-AYAKKHGIPVAEDN 174


>gi|229119924|ref|ZP_04249181.1| GMP synthase, large subunit [Bacillus cereus 95/8201]
 gi|228663538|gb|EEL19121.1| GMP synthase, large subunit [Bacillus cereus 95/8201]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|225569024|ref|ZP_03778049.1| hypothetical protein CLOHYLEM_05103 [Clostridium hylemonae DSM
           15053]
 gi|225161823|gb|EEG74442.1| hypothetical protein CLOHYLEM_05103 [Clostridium hylemonae DSM
           15053]
          Length = 430

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAA+L +  G  +  V +  +   + ++ +G     +       
Sbjct: 135 DRKVLLALSGGVDSSVVAAMLLKAIGQQLTCVHV-NHGLMRKNESEGVVEVFK------- 186

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + ++ +    D  ERF    + V  P              +     ++        R+
Sbjct: 187 --NQLHANLIYVDATERFLGKLDGVSDP---EQKRK------IIGGEFIRV--FEEEARK 233

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G + L  G        + + G +   M +           +    +    +L  PL  
Sbjct: 234 LDGIEFLGQG---TIYPDIIESGTKTAKMVKSHHN-------VGGLPEDLQFELVEPLKQ 283

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+GL 
Sbjct: 284 LFKDEVRACGIELGLP 299


>gi|163816407|ref|ZP_02207773.1| hypothetical protein COPEUT_02596 [Coprococcus eutactus ATCC 27759]
 gi|158448404|gb|EDP25399.1| hypothetical protein COPEUT_02596 [Coprococcus eutactus ATCC 27759]
          Length = 513

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 66/197 (33%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         D   
Sbjct: 215 DGKVLCALSGGVDSSVAAVLLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAVFGPDG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                +++    + ++RF +           AG T  P  +  R +             +
Sbjct: 270 ---PYDLNFIRVNAQDRFYSK---------LAGVT-EP--EAKRKIIGEEFIRVFEEEAK 314

Query: 135 QLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++GA D L  G      +  G D          +    D   F           L F   
Sbjct: 315 KIGAVDFLVQGTIYPDVIESGLDKSAVIKSHHNVGGLPDYVDFKEIVEPL---RLLF--- 368

Query: 194 DMKKESVRDLAREMGLD 210
              K+ VR    E+G+ 
Sbjct: 369 ---KDEVRKAGLELGIP 382


>gi|153004115|ref|YP_001378440.1| NAD synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152027688|gb|ABS25456.1| NAD+ synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 324

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 46/217 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV MSGG+DSSVVA L  R  G D V+G+ +     R +S           +   R + D
Sbjct: 36  VVGMSGGIDSSVVATLCTRALGADRVLGLLM---PERDSSS--------DALRLGRSLAD 84

Query: 82  TINVSHYVFDYEE------RFRNAV--IVPFASSYAAG---ETPLPCVDCNRTVKFSDLL 130
            + + H V D          +   +  I      Y  G   +  LP +     +  + LL
Sbjct: 85  HLGIRHLVEDVGPALAGLGCYERQLEAIRSVVPEYGEGWRCKLTLPSLLAGDRLNVT-LL 143

Query: 131 SVTRQLGADV-------------LATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQS 174
           +V   LG +               AT    R+R  +      R          R   DQ 
Sbjct: 144 TVADPLGRERSSRMSAAAYLQLVAATNFKQRARKMMEYYHADRLNFAVAGTPNRLEYDQG 203

Query: 175 YFLFATTQQQLCDLRF-PLGDMKKESVRDLAREMGLD 210
           +F+            F P+  + K  V  LA  +G+ 
Sbjct: 204 FFVKQGDGA----ADFKPIAHLYKTQVYALAEHLGVP 236


>gi|15612037|ref|NP_223689.1| GMP synthase [Helicobacter pylori J99]
 gi|12230201|sp|Q9ZKG4|GUAA_HELPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|4155553|gb|AAD06548.1| GMP SYNTHETASE [Helicobacter pylori J99]
          Length = 508

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 39/235 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEVFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDIC----FVQQGKYFDVVKRINAGIAL 241
           PL ++ K+ VR L +E+G+       SQD      F   G    ++  IN     
Sbjct: 358 PLRELFKDEVRLLGKELGV-------SQDFLMRHPFPGPGLAIRILGEINENKIK 405


>gi|313906605|ref|ZP_07839930.1| GMP synthase, large subunit [Eubacterium cellulosolvens 6]
 gi|313468566|gb|EFR63943.1| GMP synthase, large subunit [Eubacterium cellulosolvens 6]
          Length = 518

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 34/203 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D +V++A+SGGVDSSV A LL +  G ++  V     +     K +G      +
Sbjct: 213 LREKIGDGKVLLALSGGVDSSVAAGLLAKAVGKNLTCVF---VDHGLLRKDEGD-----E 264

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V          +++    + +ER+   +                 +     ++       
Sbjct: 265 VEAVFGPSGQFDLNFIRVNAQERYYKKLAGVTEPEQKRK------IIGEEFIRV--FEEE 316

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            +++GA D LA G      +  G  G+    +       +    D              +
Sbjct: 317 AKKIGAVDYLAQGTIYPDVVESGLGGESATIKSHHNVGGLPEFVD------------FKE 364

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL D+ K+ VR +   +G+ 
Sbjct: 365 IVEPLRDLFKDEVRKVGLHLGIP 387


>gi|229068012|ref|ZP_04201323.1| GMP synthase, large subunit [Bacillus cereus F65185]
 gi|229077613|ref|ZP_04210246.1| GMP synthase, large subunit [Bacillus cereus Rock4-2]
 gi|228705693|gb|EEL58046.1| GMP synthase, large subunit [Bacillus cereus Rock4-2]
 gi|228715115|gb|EEL66979.1| GMP synthase, large subunit [Bacillus cereus F65185]
          Length = 515

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 314

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|326938042|gb|AEA13938.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 512

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|257093517|ref|YP_003167158.1| GMP synthase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046041|gb|ACV35229.1| GMP synthase, large subunit [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 521

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSV AAL+ R  G  +  V +                    + +A +V  
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDN--------------GLLRLNEAEQVMQ 271

Query: 80  --CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                + V     D   RF      V  P       G   +                 +R
Sbjct: 272 TFARNLGVKVIHVDAAARFLGHLQGVSDPEQKRKIIGREFVEVFQA----------EASR 321

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              A  LA G      +       ++    +           +    +    DL  PL +
Sbjct: 322 LDNARWLAQGTIYPDVIESAGAKTKKAHTIKSHHN-------VGGLPETLNLDLLEPLRE 374

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 375 LFKDEVRELGVALGLP 390


>gi|218895379|ref|YP_002443790.1| GMP synthase [Bacillus cereus G9842]
 gi|226738384|sp|B7IUT1|GUAA_BACC2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218543592|gb|ACK95986.1| GMP synthase [Bacillus cereus G9842]
          Length = 512

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|288905251|ref|YP_003430473.1| bifunctional GMP synthase/glutamine amidotransferase [Streptococcus
           gallolyticus UCN34]
 gi|325978227|ref|YP_004287943.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|288731977|emb|CBI13542.1| putative bifunctional GMP synthase/glutamine amidotransferase
           [Streptococcus gallolyticus UCN34]
 gi|325178155|emb|CBZ48199.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 520

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 32/211 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     L   ++ K   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDLQISEIRKKVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 +  
Sbjct: 264 RKGEGDQVMN-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRK------IIG 310

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V  S       +L G D LA G      +  G D  +     +           +  
Sbjct: 311 NEFV--SVFDDEASKLKGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGG 358

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +L  PL  + K+ VR L   +G+ 
Sbjct: 359 LPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|206972695|ref|ZP_03233634.1| GMP synthase [Bacillus cereus AH1134]
 gi|206732381|gb|EDZ49564.1| GMP synthase [Bacillus cereus AH1134]
          Length = 512

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|258514039|ref|YP_003190261.1| GMP synthase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777744|gb|ACV61638.1| GMP synthase, large subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 510

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K   + +V+ A+SGGVDSSV A L+ R  G  +  V            RKG   A Q + 
Sbjct: 211 KTVGNRQVLCALSGGVDSSVAAVLVHRAIGDQLTCVF-----VDHGLLRKGE--AEQVIS 263

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLL 130
             R   D  +++    D EERF +            G T     +  R +          
Sbjct: 264 TFR---DKFHINLIAVDAEERFLSR---------LQGVT---DPERKRKIIGEEFIRVFE 308

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +LG  D L  G        V + G     + +           +    +     L 
Sbjct: 309 EEAAKLGQIDYLVQG---TLYPDVVESGTATAAVIKSHHN-------VGGLPEDMKLKLI 358

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR L  E+G+ 
Sbjct: 359 EPLRWLFKDEVRVLGEELGIP 379


>gi|239906875|ref|YP_002953616.1| GMP synthase [Desulfovibrio magneticus RS-1]
 gi|259647678|sp|C4XSN8|GUAA_DESMR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|239796741|dbj|BAH75730.1| GMP synthase [Desulfovibrio magneticus RS-1]
          Length = 516

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 30/200 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   D  VV A+SGGVDS+VVA +L +     IG  L          R G        
Sbjct: 213 LKEKVGDDEVVCALSGGVDSTVVAVMLHKA----IGKKLHCIFVDNGLLRMGEGEEV--- 265

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             A  + +  +++ +  D  + F +    V  P       G+T +   +          +
Sbjct: 266 --AAYLREHFDLNLHYVDAAKLFLDKLAGVTDPEEKRKIIGKTFIEVFE----------V 313

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +      LA G  +   +      K    + +           +    +     L  
Sbjct: 314 EAAKLPKVKYLAQG-TLYPDVIESVSFKGPSAVIKSHHN-------VGGLPEVMKLALIE 365

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +A E+G+ 
Sbjct: 366 PLRELFKDEVRKVAVELGMP 385


>gi|228475103|ref|ZP_04059830.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270867|gb|EEK12264.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 275

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 41/203 (20%)

Query: 14  LDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           LD   K+M  VV+A SGGVDSS+V   LK+   +V+G       + K    K      ++
Sbjct: 11  LDTLLKEMESVVIAFSGGVDSSLV---LKKA-INVLG-----KENVKPVVVKSELFRNEE 61

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              A  +   + +     +  E     ++     S+            ++ + +S L   
Sbjct: 62  FNKAIELGHELGIDVVETEMAELQDENIVRNTPESW----------YYSKRLMYSKLTDF 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              LG + +  G        + DD +  R   +  D  + +S         Q   L    
Sbjct: 112 KDVLGFNYVLDG-------MIMDDLEDFRPGLKARDEFKVRSVL-------QEAKLY--- 154

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
               K  VR+L+++  L + +K 
Sbjct: 155 ----KTEVRELSKKYDLPVWNKP 173


>gi|225575109|ref|ZP_03783719.1| hypothetical protein RUMHYD_03198 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037668|gb|EEG47914.1| hypothetical protein RUMHYD_03198 [Blautia hydrogenotrophica DSM
           10507]
          Length = 273

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 52/197 (26%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            +A SGGVDS   A LL           ++ +    A   K       ++ DA R+ + +
Sbjct: 36  ALAFSGGVDS---AYLLYAA--------MKNHCQLTAYFIKTPFQPQFELDDALRLAEEL 84

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
           +    V   +   R  +I              P   C  C + + F+ L S  ++ G  +
Sbjct: 85  SAPLKVLSLDILDREVIIS------------NPADRCYFCKKAL-FTALTSQAKRDGYTL 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKE 198
           +  G                         + D    + A T+ Q   +  PL    + K+
Sbjct: 132 VFDGTNAS--------------------DQTDDRPGMKALTELQ---VLSPLRECGLTKQ 168

Query: 199 SVRDLAREMGLDIADKS 215
           ++R L++E GL   DK 
Sbjct: 169 TIRQLSKEAGLFTYDKP 185


>gi|42779372|ref|NP_976619.1| GMP synthase [Bacillus cereus ATCC 10987]
 gi|50400359|sp|Q73ER7|GUAA_BACC1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|42735288|gb|AAS39227.1| GMP synthase [Bacillus cereus ATCC 10987]
          Length = 512

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|325845752|ref|ZP_08169016.1| PP-loop family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481890|gb|EGC84921.1| PP-loop family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 220

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 29/142 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAAL---LKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  +V  A+SGG DS + A L   L +     ++V  + +          ++      +
Sbjct: 33  NEGDKVACAISGGKDSLLTAKLVEELHKHSNVNFEVEYICM-----DPGYDKENRDLLEK 87

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           ++         +N+        + F + V     S   +G+   PC  C   ++   L +
Sbjct: 88  NLKY-------LNIP------AKIFDSDVFE--ISEKISGD--YPCYMC-ARMRRGFLYA 129

Query: 132 VTRQLGADVLATGHYIRSRLYV 153
             ++LG + +A GH++   +  
Sbjct: 130 KAKELGCNKVALGHHMNDAVET 151


>gi|324324271|gb|ADY19531.1| GMP synthase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 512

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 262

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +     E P     +  N  +       
Sbjct: 263 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDD 311

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +     L  
Sbjct: 312 EASKLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 362 PLNTLFKDEVRVLGSELGIP 381


>gi|317180159|dbj|BAJ57945.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F32]
          Length = 508

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|294791511|ref|ZP_06756668.1| argininosuccinate synthase [Scardovia inopinata F0304]
 gi|294457982|gb|EFG26336.1| argininosuccinate synthase [Scardovia inopinata F0304]
          Length = 432

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  R+V+A SGG+D+SV    L    G +V+ V      S    +        ++   A 
Sbjct: 28  KGGRIVLAYSGGLDTSVAIPFLTERTGKEVVAV------SVDVGQGGEDLETIRERALAC 81

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              +      YV D  E F     +    + A  +   P V   +R +    L+    + 
Sbjct: 82  GAAEA-----YVVDAREEFARDYCMLALKANALYQEQYPLVSAISRPLITKHLVEAAHRF 136

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 137 GADTIAHG 144


>gi|224061092|ref|XP_002187518.1| PREDICTED: guanine monphosphate synthetase [Taeniopygia guttata]
          Length = 693

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 65/213 (30%), Gaps = 45/213 (21%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNREQ---VIAVHIDN--------GFMRKRESQAVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            R    + +   V +    F N              TP   +             R +  
Sbjct: 287 LR---KLGIHVKVVNAAHSFYNG--TTTLPISNEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQ 183
              + +  +     +     ++        G  R  +     L    + +         +
Sbjct: 342 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAEVIKTHHNDTE 396

Query: 184 QLCDL------RFPLGDMKKESVRDLAREMGLD 210
            +  L        PL D  K+ VR L RE+GL 
Sbjct: 397 LIRKLREEGKVIEPLKDFHKDEVRVLGRELGLP 429


>gi|212695922|ref|ZP_03304050.1| hypothetical protein ANHYDRO_00455 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677045|gb|EEB36652.1| hypothetical protein ANHYDRO_00455 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 221

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 29/142 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAAL---LKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  +V  A+SGG DS + A L   L +     ++V  + +          ++      +
Sbjct: 34  NEGDKVACAISGGKDSLLTAKLVEELHKHSKVNFEVEYICM-----DPGYDKENRDLLEK 88

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           ++         +N+        + F + V     S   +G+   PC  C   ++   L +
Sbjct: 89  NLKY-------LNIP------AKIFDSDVFE--ISEKISGD--YPCYMC-ARMRRGFLYA 130

Query: 132 VTRQLGADVLATGHYIRSRLYV 153
             ++LG + +A GH++   +  
Sbjct: 131 KAKELGCNKVALGHHMNDAIET 152


>gi|170016947|ref|YP_001727866.1| GMP synthase [Leuconostoc citreum KM20]
 gi|169803804|gb|ACA82422.1| GMP synthase [Leuconostoc citreum KM20]
          Length = 515

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL +     IG         + +         +   +A +V
Sbjct: 220 DKKVLLGLSGGVDSSVVGVLLHKA----IG--------NQLTSIFVDHGLLRK-NEAEQV 266

Query: 80  ----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                D   ++    D ++RF + +                 +  N  +          +
Sbjct: 267 MTMMGDQFGLNIIKVDAQDRFLSKLAGVTDPEQKRK------IIGNEFI--EVFNDEATK 318

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L   D LA G      +  G D  +     +           +    +     L  PL  
Sbjct: 319 LKDIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFKLIEPLNT 368

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   + + 
Sbjct: 369 LFKDEVRELGEALNMP 384


>gi|229542570|ref|ZP_04431630.1| GMP synthase, large subunit [Bacillus coagulans 36D1]
 gi|229326990|gb|EEN92665.1| GMP synthase, large subunit [Bacillus coagulans 36D1]
          Length = 517

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 69/217 (31%), Gaps = 44/217 (20%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   + +V+ A+SGGVDSSVVA L+ +  G  +  +           
Sbjct: 205 MENYIEMEIEKIRQTVGNKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGL 259

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL- 115
            RKG          A  V  T         + E F   VI       F         P  
Sbjct: 260 LRKGE---------AESVMKT---------FSEGFNMNVIKVDAKERFLKKLKGVSDPEQ 301

Query: 116 -PCVDCNRTV-KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
              +  N  +  F D     +  G D LA G        V + G       +        
Sbjct: 302 KRKIIGNEFIYVFDD--EAAKLEGIDFLAQG---TLYTDVIESGTTTAQTIKSHHN---- 352

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              +    +     L  PL  + K+ VR +  E+G+ 
Sbjct: 353 ---VGGLPEDMQFTLIEPLNTLFKDEVRAVGTELGIP 386


>gi|257470331|ref|ZP_05634422.1| GMP synthase [Fusobacterium ulcerans ATCC 49185]
 gi|317064541|ref|ZP_07929026.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690217|gb|EFS27052.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 512

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSV A L+ +     IG         + +         +   +A++V
Sbjct: 215 DKKVLLGLSGGVDSSVAATLIHKA----IG--------DQLTCIFVDTGLLRK-DEAKKV 261

Query: 80  CDTINVSHYV----FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV--- 132
            +    + ++     D E+RF             AG   +   +  R +   + + V   
Sbjct: 262 MEIYGENFHMNIKCVDAEDRFLAK---------LAG---VSDPETKRKIIGKEFIEVFDE 309

Query: 133 -TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             ++L   + LA G  I   +      K   +  +           +    +     L  
Sbjct: 310 EAKKLEDVEFLAQG-TIYPDVIESMSVKGPSMTIKSHHN-------VGGLPEDMKFKLLE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR + RE+G+ 
Sbjct: 362 PLRELFKDEVRKVGRELGIP 381


>gi|308063827|gb|ADO05714.1| GMP synthase [Helicobacter pylori Sat464]
          Length = 508

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|218295987|ref|ZP_03496767.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermus
           aquaticus Y51MC23]
 gi|218243725|gb|EED10253.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermus
           aquaticus Y51MC23]
          Length = 406

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 43/192 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV  +SGG+DS V A  L R G +V+ V    +     + R+           AR + +
Sbjct: 175 KVVALLSGGIDSPVAAYRLMRRGAEVVLVHFHPFPLLSGASREK----------ARAIAE 224

Query: 82  TI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +      V  ++  + E  +  +I+    +Y         V   R +      +V ++ 
Sbjct: 225 RLARFQHRVRLHLVPFSEV-QRRIILEAPKAYR-------VVLYRRYM-LRLAEAVAKEE 275

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  L TG  +        +                    L+   Q     +  PL  + 
Sbjct: 276 GALALVTGDSLGQVASQTLEN-------------------LYVVNQAATLPVFRPLIGLD 316

Query: 197 KESVRDLAREMG 208
           K  +   A+++G
Sbjct: 317 KGEIVKEAQKIG 328


>gi|21243085|ref|NP_642667.1| argininosuccinate synthase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|24211494|sp|Q8PK26|ASSY_XANAC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|21108600|gb|AAM37203.1| argininosuccinate synthase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 412

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V+A SGG+D+S     L+  GY V  V                    ++     +    
Sbjct: 21  IVLAFSGGLDTSFCIPYLQERGYAVHTVF-----------ADTGGVDAEEREFIEKRAAE 69

Query: 83  INV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +   SH   D         + PF  +    +   P +  +R +     L    +LG  ++
Sbjct: 70  LGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRII 129

Query: 142 ATG 144
           A G
Sbjct: 130 AHG 132


>gi|103485988|ref|YP_615549.1| argininosuccinate synthase [Sphingopyxis alaskensis RB2256]
 gi|119361325|sp|Q1GVV6|ASSY_SPHAL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|98976065|gb|ABF52216.1| argininosuccinate synthase [Sphingopyxis alaskensis RB2256]
          Length = 405

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 18/129 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RVV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR  
Sbjct: 6   KRVVLAYSGGLDTSVILKWLQVTYGCEVVTFT-------------ADLGQGEELEPARAK 52

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQ 135
            + + +     Y+ D  E F    + P   + A  E          R +    L+ + R+
Sbjct: 53  AELMGIKPEHIYIDDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLVEIARE 112

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 113 TGADAVAHG 121


>gi|307354802|ref|YP_003895853.1| PP-loop domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307158035|gb|ADN37415.1| PP-loop domain-containing protein [Methanoplanus petrolearius DSM
           11571]
          Length = 277

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 51/242 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ SGGVDS+V+A   K     V+   +   L +S   S+ +        + +A  + +
Sbjct: 36  LVSYSGGVDSTVLAVAAKE----VLPARMSCALIDSPLVSRSE--------IREALELAE 83

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++++   V       ++ ++         G     C  C + +    LL     LG + +
Sbjct: 84  SLSLPCSVI------KSDILEDT-EFRENGRD--RCYICKKKMS-GLLLREAEMLGLEHV 133

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A             DG     + +       Q+          +         M KE +R
Sbjct: 134 A-------------DGSNISDLAKFRPGF--QASGEAGIIHPFIE------AGMDKEDIR 172

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNG---QILGRHN 257
            LAR  GL +++K      C   +  Y +   + I   I    D +   G     + +H 
Sbjct: 173 KLARIYGLPVSEKPSY--SCLASRIPYENRFKEEILGEIESSEDFIRSLGVGQVRVRKHG 230

Query: 258 GI 259
           GI
Sbjct: 231 GI 232


>gi|15966962|ref|NP_387315.1| argininosuccinate synthase [Sinorhizobium meliloti 1021]
 gi|307301735|ref|ZP_07581494.1| argininosuccinate synthase [Sinorhizobium meliloti BL225C]
 gi|307316240|ref|ZP_07595684.1| argininosuccinate synthase [Sinorhizobium meliloti AK83]
 gi|24211519|sp|Q92L73|ASSY_RHIME RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|15076235|emb|CAC47788.1| Probable argininosuccinate synthase [Sinorhizobium meliloti 1021]
 gi|306898080|gb|EFN28822.1| argininosuccinate synthase [Sinorhizobium meliloti AK83]
 gi|306903433|gb|EFN34022.1| argininosuccinate synthase [Sinorhizobium meliloti BL225C]
          Length = 405

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|313205278|ref|YP_004043935.1| exsb protein [Paludibacter propionicigenes WB4]
 gi|312444594|gb|ADQ80950.1| exsB protein [Paludibacter propionicigenes WB4]
          Length = 214

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 72/211 (34%), Gaps = 48/211 (22%)

Query: 21  MR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-----ASKRKGSCCAGQDVY 74
           M+ +V+  SGG+DSSV                  LY          +   GS    +++ 
Sbjct: 1   MKDIVILYSGGMDSSVA-----------------LYEHADRIRRALTFNYGSKHNLREME 43

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF------SD 128
            A R C  + + H+V +  +  +   +     S   G+ P    +    +K         
Sbjct: 44  YAARNCKRLGIEHHVIEL-DMNKMGFVSDLLQS--GGDIPNGHYEDQNMIKTVVPFRNGI 100

Query: 129 LLS----VTRQLGADVL-ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +LS    +   +G D L  + H     +Y     +  + M + + L    +Y        
Sbjct: 101 MLSIAAGIAESIGCDKLMISNHAGDHAIYPDCREEFIQTMNKAISLG---TYNHCEI--- 154

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADK 214
                  P  ++ K  +  + +E+G+   D 
Sbjct: 155 -----LAPYTNLTKREIALIGKEIGVPFEDT 180


>gi|227501015|ref|ZP_03931064.1| PP-loop superfamily ATP-binding protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227216788|gb|EEI82186.1| PP-loop superfamily ATP-binding protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 285

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 52/210 (24%)

Query: 14  LDKNPKDM---RVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           LDK  KD+   + V+A SGGVDSS++  L    ++   D++ + +   N+          
Sbjct: 11  LDKIIKDLLEDKFVLAFSGGVDSSLILKLASDFRKKRNDIVAI-MYNTNTTPDG------ 63

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               D+ +A+ + D ++V   + +         I  F + +    +   C  C   + F 
Sbjct: 64  ----DLENAQNLADEMDVELRIVN---------IDVFDNDHIKNNSIDRCYHCKSFL-FE 109

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               +  +LG   +  G  +       DD K  R   R ++                   
Sbjct: 110 QAFKLRDELGYKHVVDGSNL-------DDYKVFRPGVRALND----------------KG 146

Query: 188 LRFPLGD--MKKESVRDLAREMGLDIADKS 215
           +  PL D    K+ VR  A+E+GL++  + 
Sbjct: 147 VISPLKDAGFSKKMVRAYAKELGLEVYKRP 176


>gi|167039805|ref|YP_001662790.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300915540|ref|ZP_07132850.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307724869|ref|YP_003904620.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854045|gb|ABY92454.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|300888404|gb|EFK83556.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307581930|gb|ADN55329.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 300

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 21/133 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            KD RV+V +SGG DS +    +L ++GY+V+ + +      + S R             
Sbjct: 45  KKDDRVLVVVSGGKDS-MALWDVLVKEGYNVVAMYI-NLGIGEYSNRSQEV--------V 94

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTR 134
                  N+   V + +E F           Y   +T    PC  C   +K      V  
Sbjct: 95  ENFAKKNNLPLIVKNIKEEFG-------LDIYKLSKTLKRSPCSVCGT-IKRYLFNKVAY 146

Query: 135 QLGADVLATGHYI 147
             G  V+ATGH +
Sbjct: 147 DNGFSVIATGHNL 159


>gi|306833433|ref|ZP_07466560.1| GMP synthase [Streptococcus bovis ATCC 700338]
 gi|304424203|gb|EFM27342.1| GMP synthase [Streptococcus bovis ATCC 700338]
          Length = 520

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     L   ++ K   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIELQISEIRKKVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG-ETPL--PC 117
            K +G             +     ++    D  +RF +           AG E P     
Sbjct: 264 RKGEGDQVMN-------MLGGKFGLNIIRVDASKRFLD---------LLAGVEDPEKKRK 307

Query: 118 VDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           +  N  V  S       +L G D LA G      +  G D  +     +           
Sbjct: 308 IIGNEFV--SVFDDEASKLKGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN------- 355

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 VGGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|170758457|ref|YP_001785433.1| hypothetical protein CLK_3279 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405446|gb|ACA53857.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A3
           str. Loch Maree]
          Length = 268

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 56/233 (24%)

Query: 19  KDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD++ V VA SGGVDS+    LL +   + +G      ++  +           ++ +AR
Sbjct: 15  KDLKSVAVAFSGGVDST----LLLKAAKEALG------DNAISITIVSPYIPKWEIKEAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            + D I +  Y  +           P      +     P   C  C +++ F+ +  + R
Sbjct: 65  ELVDKIGIKSYFIEV----------PMLQEIRS----NPEDRCYICKKSI-FNKIKDLAR 109

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-- 192
           + G   +  G                       D  +D  Y       ++L  ++ PL  
Sbjct: 110 EKGIKYIVDGTNA--------------------DDTKD--YRPGMIALKELD-VKSPLLE 146

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             + K+ +R L++E+ LD  DK      C + +  Y   +K  +     + ++
Sbjct: 147 NSINKKEIRVLSKELQLDTWDKP--AYACLLSRIPYNQEIKEEDLDRIEKAEV 197


>gi|116254242|ref|YP_770080.1| argininosuccinate synthase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|119361254|sp|Q1MAN9|ASSY2_RHIL3 RecName: Full=Argininosuccinate synthase 2; AltName:
           Full=Citrulline--aspartate ligase 2
 gi|115258890|emb|CAK09999.1| putative argininosuccinate synthase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 407

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + ++ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIAKKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|71279202|ref|YP_270891.1| GMP synthase [Colwellia psychrerythraea 34H]
 gi|91206801|sp|Q47WD1|GUAA_COLP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71144942|gb|AAZ25415.1| GMP synthase [Colwellia psychrerythraea 34H]
          Length = 525

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLLHRAIGDKLTCVFVDNGLLRLDEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E+RF N +                 +  N  +        +
Sbjct: 279 -------DHFGLNIIKIEAEDRFLNRLAGESEPEAKRK------IIGNVFI--DVFEEES 323

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +L  A  LA G      +        +  + +           +          L  PL
Sbjct: 324 NKLDNAKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 RELFKDEVRKIGLELGLP 394


>gi|241206724|ref|YP_002977820.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860614|gb|ACS58281.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 407

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + ++ G
Sbjct: 55  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIAKKTG 114

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 115 ADAIAHG 121


>gi|91091728|ref|XP_967315.1| PREDICTED: similar to argininosuccinate synthetase [Tribolium
           castaneum]
 gi|270001069|gb|EEZ97516.1| hypothetical protein TcasGA2_TC011361 [Tribolium castaneum]
          Length = 409

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S +   L    Y+VI   +      +            D   ARR  +
Sbjct: 5   KVVLAYSGGLDTSCILRWLLDQNYEVI-CYMANIGQDE------------DFEAARRKAE 51

Query: 82  TINVSHYVF-DYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
            I  S  V  D  E F    + P         S Y  G +   PC+          L++ 
Sbjct: 52  QIGASQVVIEDLREIFVKEYVWPAIQAGLLYESRYLLGTSLARPCISVG-------LITA 104

Query: 133 TRQLGADVLATG 144
            ++  A  ++ G
Sbjct: 105 AKKYNALYISHG 116


>gi|325294037|ref|YP_004279901.1| Argininosuccinate synthase [Agrobacterium sp. H13-3]
 gi|325061890|gb|ADY65581.1| Argininosuccinate synthase [Agrobacterium sp. H13-3]
          Length = 446

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 46/208 (22%)

Query: 18  PKD-MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD  +VV+A SGG+D+S++   L+   G +V+  T                  G+++  
Sbjct: 43  PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEP 89

Query: 76  ARRVCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVT 133
           AR+  + + +      D  E F    + P   + A  E          R +    L+ + 
Sbjct: 90  ARKKAELLGIKEIFVEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 149

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRF 190
           ++ GAD +A G                           DQ  F    +A        +  
Sbjct: 150 KKTGADAIAHG---------------------ATGKGNDQVRFELSAYALNPDI--KIIA 186

Query: 191 PLGDMK-KE--SVRDLAREMGLDIADKS 215
           P  D   K    + + A +  + +A   
Sbjct: 187 PWRDWTFKSRTDLLEFAEKNQIPVAKDK 214


>gi|320529147|ref|ZP_08030239.1| GMP synthase protein [Selenomonas artemidis F0399]
 gi|320138777|gb|EFW30667.1| GMP synthase protein [Selenomonas artemidis F0399]
          Length = 519

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 35/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L K     R + A+SGGVDSSV A LL +  G ++  V     +     K +G      
Sbjct: 214 ELRKKIGGGRALCALSGGVDSSVAAVLLSKAIGKNLTCVF---VDQGLLRKNEGD----- 265

Query: 72  DVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +   V     T +V+    + +ERF   +                 +     ++   
Sbjct: 266 ---EVEAVFGSAGTYDVNFIRINAQERFYEKLKGVTEPEQKRK------IIGAEFIRV-- 314

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
                 ++G  D L  G        V + G  +  + +           +          
Sbjct: 315 FEEAAHEIGTVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDHVDFK 364

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+ VR   RE+G+ 
Sbjct: 365 EIVEPLRLLFKDEVRAAGRELGIP 388


>gi|295107449|emb|CBL04992.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Gordonibacter pamelaeae 7-10-1-b]
          Length = 327

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 46/199 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  +I V          +         + V D  +
Sbjct: 36  DQKVLLALSGGVDSSVVAALLIKAIGKQLICVH--------VNHGLMRKGESEQVVDVFQ 87

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
             + ++ +    D  +RF    + V  P               +  R +           
Sbjct: 88  --NQLDANLVYVDATDRFLDLLDGVAEP---------------EAKRKIIGAEFIRVFEE 130

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R++G             +     G     +    D  +            Q   L  P
Sbjct: 131 EARKVG-----------DEVSFLAQGTIYPDILES-DGVKAHHNVGGLPDDLQFE-LCEP 177

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR + RE+GL 
Sbjct: 178 VKLLYKDEVRVIGRELGLP 196


>gi|288942041|ref|YP_003444281.1| argininosuccinate synthase [Allochromatium vinosum DSM 180]
 gi|288897413|gb|ADC63249.1| argininosuccinate synthase [Allochromatium vinosum DSM 180]
          Length = 406

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR  
Sbjct: 7   KKVVLAYSGGLDTSVILKWLQEQYGCEVVTFT-------------ADIGQGEELEPARTK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                V   Y+ D  E F +  + P           Y  G +    +   R      L+ 
Sbjct: 54  AQAAGVKEIYIDDLREEFVSDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIE 107

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 108 IAAETGADAIAHG 120


>gi|228989434|ref|ZP_04149422.1| GMP synthase, large subunit [Bacillus pseudomycoides DSM 12442]
 gi|228995630|ref|ZP_04155295.1| GMP synthase, large subunit [Bacillus mycoides Rock3-17]
 gi|229003258|ref|ZP_04161091.1| GMP synthase, large subunit [Bacillus mycoides Rock1-4]
 gi|228757992|gb|EEM07204.1| GMP synthase, large subunit [Bacillus mycoides Rock1-4]
 gi|228764126|gb|EEM13008.1| GMP synthase, large subunit [Bacillus mycoides Rock3-17]
 gi|228770305|gb|EEM18881.1| GMP synthase, large subunit [Bacillus pseudomycoides DSM 12442]
          Length = 515

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 68/200 (34%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 265

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E F   VI       F +     E P     +  N  +  F D  
Sbjct: 266 VMKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDD-- 314

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +R  G D LA G        + + G       +           +    +     L  
Sbjct: 315 EASRLEGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIE 364

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 365 PLNTLFKDEVRVLGSELGIP 384


>gi|33322638|gb|AAQ07052.1|AF496367_1 tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis]
          Length = 40

 Score = 55.6 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
           ++    V  GQA   Y  +      LGGG I  + + D   +
Sbjct: 1   DEPARAVTPGQALXLYNGE----ECLGGGNIDAAFKDDKKLQ 38


>gi|313205650|ref|YP_004044827.1| gmp synthase (glutamine-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312444966|gb|ADQ81321.1| GMP synthase (glutamine-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
          Length = 509

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 40/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V++ +SGGVDSSV A L+ +  G  +  +                     
Sbjct: 205 EIRQKVGNQKVILGLSGGVDSSVAAVLIHKAIGSQLTCIF--------------VDTGLL 250

Query: 72  DVYDARRVCD------TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              +A++V +       +N+     D  ERF + +                 +  N  V 
Sbjct: 251 RKNEAQKVMENYGSHFNLNIKL--IDASERFLSKLKGVSDPEQKRK------IIGNEFV- 301

Query: 126 FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
            +     + ++ GA  LA G  I   +      K    + +           +    +  
Sbjct: 302 -AVFDEESHKIEGAKFLAQG-TIYPDVIESQSVKGPSAVIKSHHN-------VGGLPEDM 352

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL ++ K+ VR +  E+G+ 
Sbjct: 353 EFELLEPLRELFKDEVRKVGEELGIP 378


>gi|304440238|ref|ZP_07400128.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371287|gb|EFM24903.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 271

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 54/219 (24%)

Query: 22  RVVVAMSGGVDSS--VVAA--LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           R+ VA SGGVDSS  VVAA  +L   G + I + + L +S +    +           A+
Sbjct: 21  RIAVAFSGGVDSSFLVVAAKKIL---GKENI-LAINLISSMQPESEE---------NYAK 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              D  ++        + +    I  F        +   C  C  ++ FS ++ ++ + G
Sbjct: 68  EFADKYDIDLIRIP-ADEYS---IEGFVE-----NSKDRCYYCKHSI-FSKVIEISEKNG 117

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG--DM 195
             ++A G          D+G  R  M    +L                  ++ PL   ++
Sbjct: 118 FKIVADG------TNADDEGDYRPGMKALKELN-----------------VKSPLKEVEL 154

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
            K  +R L +EM ++  +K  +   C   +  Y   + +
Sbjct: 155 TKSEIRTLLKEMNVETYNKPSA--ACLASRVPYGTEITK 191


>gi|298386289|ref|ZP_06995845.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14]
 gi|298260666|gb|EFI03534.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14]
          Length = 426

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++++A+SGG DS V     L   GY         +   + S R        D    R+
Sbjct: 19  NDKLLIALSGGADS-VALLRVLHTAGYQCEAAHCNFHLRGEESNR--------DEQFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    +  +  D+                 + E         R ++++    +  + GA
Sbjct: 70  LCQKYGIRLHTIDFNTT------QYATEKRISIE------MAARELRYNWFEKIKEECGA 117

Query: 139 DVLATGHY 146
            V+A  H+
Sbjct: 118 HVIAVAHH 125


>gi|260913036|ref|ZP_05919521.1| GMP synthase [Pasteurella dagmatis ATCC 43325]
 gi|260633026|gb|EEX51192.1| GMP synthase [Pasteurella dagmatis ATCC 43325]
          Length = 523

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L  + +     G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEAEQVMDMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + E RF +A+             P         V        +
Sbjct: 277 -------DKFGLNIIHVNAENRFLDALKG--IDE------PEAKRKTIGKVFVDVFDDES 321

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 322 KKLSSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 375 RELFKDEVRKIGLALGLP 392


>gi|323345389|ref|ZP_08085612.1| GMP synthase [Prevotella oralis ATCC 33269]
 gi|323093503|gb|EFZ36081.1| GMP synthase [Prevotella oralis ATCC 33269]
          Length = 514

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL +  G ++  +                    +
Sbjct: 206 ELKEQLGNDRVILGLSGGVDSSVCATLLNKAIGSNLTCIF--------VDHGMLRKNEFR 257

Query: 72  DVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            V DA +      +  +V   D  ++F +           AG T     +  R +   D 
Sbjct: 258 KVMDAYQ-----GLGLHVIGIDASKKFFDD---------LAGVT---DPEQKRKIIGRDF 300

Query: 130 LSV----TRQL-GADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           + V     +++  A  LA G  +  R           +                +    +
Sbjct: 301 VEVFNAEAKKITDAKWLAQGTIYPDRIESLSITGMTIKSHHN------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR + RE+G+ 
Sbjct: 349 EMKLQLCEPLQWLFKDEVRRVGRELGMP 376


>gi|295105730|emb|CBL03273.1| argininosuccinate synthase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 443

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 38/205 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  + V+A SGG+D+S     L+   G DVI V   +    +  ++           D  
Sbjct: 4   QKEKAVLAYSGGLDTSCCIKWLQENKGVDVIAVVGDVGQEHEGLEKIKQKALKSGALDC- 62

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                      V D  E F    +    ++ A  E   P V   +R +    L+    + 
Sbjct: 63  ----------LVVDMRETFAKEYLAKALAANAMYENKYPLVSALSRPLISKHLVDAAHKF 112

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM 195
           GA  +A G                   C       DQ  F  + T      ++  P+ + 
Sbjct: 113 GAKYIAHG-------------------CTGK--GNDQVRFESSITMLDPDIEILAPVREW 151

Query: 196 ---KKESVRDLAREMGLDIADKSDS 217
               +    + A+  G+++     S
Sbjct: 152 ELKTRPEEMEWAQAHGIEVPTTKKS 176


>gi|237653287|ref|YP_002889601.1| GMP synthase [Thauera sp. MZ1T]
 gi|237624534|gb|ACR01224.1| GMP synthase, large subunit [Thauera sp. MZ1T]
          Length = 521

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGKLVMEMF-------AG 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           +  G T     +  R +   + + V     R+L 
Sbjct: 276 RLHAKVVHVDATEQFM---------GHLKGVT---DPEQKRKIIGREFVEVFQAEARKLP 323

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 324 NARWLAQGTIYPDVIESGGAKSKKAHTIKSHHN-------VGGLPETLGLKLLEPLRDLF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 377 KDEVRELGVALGLP 390


>gi|159905700|ref|YP_001549362.1| PP-loop domain-containing protein [Methanococcus maripaludis C6]
 gi|159887193|gb|ABX02130.1| PP-loop domain protein [Methanococcus maripaludis C6]
          Length = 311

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---LYNSRKASKRKGSC 67
           +L  D    ++RV + +SGG DS V+A +L            +             +G  
Sbjct: 37  TLGRDVLKNNIRVAMGLSGGKDSLVMAYILNE--------FYKQIPNSKIIAIIVNEGIE 88

Query: 68  CAGQDVYDAR-RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               D  DA  + C+  N+ + +  +++     +      +     T  PC  C   ++ 
Sbjct: 89  GYRTDGIDAAIKFCEEHNIEYKIVHFKDYLGTNLDEIVKLAKEKNLTMNPCSFCG-VIRR 147

Query: 127 SDLLSVTRQLGADVLATGHYI 147
             L  V+ +   D LA GH +
Sbjct: 148 KILNRVSLEEKCDFLAIGHNL 168


>gi|325684811|gb|EGD26962.1| GMP synthase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +  +L+   + +   D  V++ +SGGVDSSV A LL +  G  +  +          
Sbjct: 204 TMDDFIKLSVDSIREEVGDANVILGISGGVDSSVTATLLHKAIGSQLTAIF--------- 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                      D   A  + + + V+    D ++RF + +                 +  
Sbjct: 255 VDHGLLRKNESDEVMA-ALKEGLGVNIVRVDAKDRFMSKLAGVTDPEKKRK------IIG 307

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V+        +++  A  LA G      +  G D        +           +  
Sbjct: 308 NEFVQV--FNDEAKKIKDAKFLAQGTLYTDVIESGTDT---AHTIKSHHN-------VGG 355

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +     L  PL  + K+ VR L  ++GL 
Sbjct: 356 LPEDMQFKLIEPLRQLFKDEVRVLGEKLGLP 386


>gi|293977833|ref|YP_003543263.1| argininosuccinate synthase [Candidatus Sulcia muelleri DMIN]
 gi|292667764|gb|ADE35399.1| Argininosuccinate synthase [Candidatus Sulcia muelleri DMIN]
          Length = 579

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 27/141 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI------GVTLQLYNSRKASKRKGS 66
           +L+   K  ++++A SGG+D+S     L  +GY VI      GV                
Sbjct: 179 NLNNLNKGDKILLAYSGGLDTSYCLKYLTNEGYKVITIIINTGVF--------------- 223

Query: 67  CCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
               +D+    +    I  +SHY  + +E F    I              P    +    
Sbjct: 224 --NNKDLESIEKRALNIGAISHYSINAKEYFYYKCIKYLVYGNILKNNTYPLSVSSERF- 280

Query: 126 FSDLL--SVTRQLGADVLATG 144
           F  +L     + L    ++ G
Sbjct: 281 FQAILIAEFAKNLKVKAISHG 301


>gi|218516022|ref|ZP_03512862.1| argininosuccinate synthase [Rhizobium etli 8C-3]
          Length = 258

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 25  KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARKK 71

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   Y+ D  E F    + P   + A  E          R +    L+ + R+ G
Sbjct: 72  AEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTG 131

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 132 ADAIAHG 138


>gi|224011487|ref|XP_002295518.1| ASSY [Thalassiosira pseudonana CCMP1335]
 gi|209583549|gb|ACI64235.1| ASSY [Thalassiosira pseudonana CCMP1335]
          Length = 418

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 28/137 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P   +VV+A SGG+D+SV+   L   G+DVI                G      +   A
Sbjct: 3   TPTKPKVVLAYSGGLDTSVILKWLCEKGFDVIAF----------CADVGQHHEDFEAVKA 52

Query: 77  RRV-CDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPL-PCVDCNRTVKFS 127
           + V C  +     V D  + F +  I             Y  G +   PC+         
Sbjct: 53  KAVSCGAL--KCIVTDLRKDFVSNYIFEALKCNAIYEGRYLLGTSVARPCIA-------K 103

Query: 128 DLLSVTRQLGADVLATG 144
           +++ +  + GA  +A G
Sbjct: 104 EMVRIAAEEGASYVAHG 120


>gi|126658519|ref|ZP_01729667.1| hypothetical protein CY0110_21380 [Cyanothece sp. CCY0110]
 gi|126620261|gb|EAZ90982.1| hypothetical protein CY0110_21380 [Cyanothece sp. CCY0110]
          Length = 276

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 49/217 (22%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+  +  +L ++  +      R ++A SGG+DS++VA +     YDV+G      +   A
Sbjct: 1   MLTDKLNQLKTIFAEME----RALIAYSGGIDSTLVAKVA----YDVLG------DRALA 46

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                     +++ DA+    TI + H + +  E                      C  C
Sbjct: 47  VTAVSPSLLPEELEDAKIQAATIGIPHELVNTHEMDNPNYTSNPI---------NRCYFC 97

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              +    L  +  + G   +  G      +   D    R  +    +            
Sbjct: 98  KSEL-HDTLKPLALKRGYPYVVDG------VNADDLQDYRPGIQAAKERS---------- 140

Query: 181 TQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKS 215
                   R PL +  + K  VR L++ +GL   DK 
Sbjct: 141 -------ARSPLAEVGITKLEVRQLSQALGLSWWDKP 170


>gi|56694946|ref|YP_165291.1| argininosuccinate synthase [Ruegeria pomeroyi DSS-3]
 gi|61211384|sp|Q5LWG3|ASSY_SILPO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56676683|gb|AAV93349.1| argininosuccinate synthase [Ruegeria pomeroyi DSS-3]
          Length = 409

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 61/215 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKPENIHIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQL 185
           L+ +  + GAD +A G                           DQ  F    +A   +  
Sbjct: 105 LVEIAAEHGADAVAHG---------------------ATGKGNDQVRFELSAYALNPEI- 142

Query: 186 CDLRFP--LGDMKKESVR--DLAREMGLDIADKSD 216
             +  P  L D+     R  + A    + I+    
Sbjct: 143 -RVIAPWRLWDLT-SRTRLLEFAEAHQIPISKDKR 175


>gi|15790733|ref|NP_280557.1| GMP synthase subunit B [Halobacterium sp. NRC-1]
 gi|169236476|ref|YP_001689676.1| GMP synthase subunit B [Halobacterium salinarum R1]
 gi|13626903|sp|Q9HP33|GUAAB_HALSA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|226738370|sp|B0R6G1|GUAAB_HALS3 RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|10581275|gb|AAG20037.1| GMP synthase subunit B [Halobacterium sp. NRC-1]
 gi|167727542|emb|CAP14330.1| GMP synthase (glutamine-hydrolyzing) subunit B [Halobacterium
           salinarum R1]
          Length = 305

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D   ++A+SGGVDSS  AAL     Y+ +G      +               +
Sbjct: 14  EISEALGDETAIIALSGGVDSSTAAALA----YEAVG------DQLVPVYVDTGLMRKGE 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             + R V D ++ S  V D  +RF +    V  P    +A GE               + 
Sbjct: 64  TDEIREVFDYMD-SLRVVDASDRFFDELAGVTDPEEKRHAIGEQF-----------IREF 111

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDL 188
            +V  ++ A  L  G     R+      K                  +    ++     +
Sbjct: 112 ETVAEEVDATQLVQGTIYPDRIESEGTIKSHHN--------------VGGLPERVGFEGI 157

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             P+ D+ K+ VR++AR +GL+
Sbjct: 158 VEPMRDLYKDEVREVARHLGLE 179


>gi|116748502|ref|YP_845189.1| PP-loop domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697566|gb|ABK16754.1| PP-loop domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 276

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 70/212 (33%), Gaps = 51/212 (24%)

Query: 22  RVVVAMSGGVDSSVVAA----LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           R+ +A SGGVDSS++A      LK+       V +    S  AS        G D  +A 
Sbjct: 27  RIGIAFSGGVDSSLLAWFAHAWLKKK------VFVFFAESGFAS--------GSDRRNAA 72

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           RV + I +   +           +  F+        P  C  C + +     +    + G
Sbjct: 73  RVAEEIGLPLEIVP---------VDVFSIEALRDNHPRRCYFCKKEMLSRIRMKAA-ESG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D+L  G +    L             RP     ++S  +    +  L           K
Sbjct: 123 CDILFDGSHAGDALG-----------YRPGKQALEESGVVSPLAEAGLD----------K 161

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229
           + +R ++R   L   D+      C   +  Y 
Sbjct: 162 DDIRRISRIARLSTWDRP--TQSCLATRIPYG 191


>gi|323703202|ref|ZP_08114855.1| GMP synthase, large subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531861|gb|EGB21747.1| GMP synthase, large subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 513

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 67/208 (32%), Gaps = 46/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +   D  V+ A+SGGVDSSV A L+ R  G  +  V                     
Sbjct: 211 DIKRQVGDRHVLCALSGGVDSSVAAVLVHRAVGDKLTCVF--------------VDHGLL 256

Query: 72  DVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
              +A +V  T     N+     D  ERF              G T     +  R +   
Sbjct: 257 RKNEAAQVVHTFRNLFNIKLVHVDASERFLGK---------LKGVT---DPEEKRKIIGA 304

Query: 126 --FSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                     R+LG  D L  G        V + G     + +           +    +
Sbjct: 305 EFIRVFEEEARKLGDIDFLVQG---TLYPDVVESGTGTAAVIKSHHN-------VGGLPE 354

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL  + K+ VR L  ++GL 
Sbjct: 355 DMKFELVEPLRWLFKDEVRRLGEQLGLP 382


>gi|220928361|ref|YP_002505270.1| ExsB family protein [Clostridium cellulolyticum H10]
 gi|219998689|gb|ACL75290.1| ExsB family protein [Clostridium cellulolyticum H10]
          Length = 269

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 47/195 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDSS    LL +  YDV+G      N   A     S    +++ +A+      
Sbjct: 21  AVAFSGGVDSS----LLLKVAYDVLG------NGVVAVTAHSSTYPEREMNEAKEFTANY 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H + D  +                G +  P   C                    L  
Sbjct: 71  GIKHRIID-SDELE-----------VKGFSDNPVNRC-------------------YLCK 99

Query: 144 GHYIRSRLYVGDDGKRRRIMCRP-MDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
                    V  +   + I+     D   D      A ++     +  PL D  + K+ +
Sbjct: 100 NELYDKIQLVAKEENVKYILEGSNHDDLGDYRPGFQAVSEHG---VLSPLKDALLTKDEI 156

Query: 201 RDLAREMGLDIADKS 215
           R L++EMGL   DK 
Sbjct: 157 RFLSKEMGLKSWDKP 171


>gi|20808825|ref|NP_623996.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|254478816|ref|ZP_05092183.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20517476|gb|AAM25600.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
 gi|214035271|gb|EEB75978.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 300

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 21/133 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            KD +V+V +SGG DS +    +L ++GY+V+ + +      + S R             
Sbjct: 45  KKDDKVLVVVSGGKDS-MALWDVLVKEGYNVVAMYI-NLGIGEYSNRSQEV--------V 94

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTR 134
                  N+   V + +E F           Y   +T    PC  C   +K      V  
Sbjct: 95  ENFAKKNNLPLIVKNIKEEFG-------LDIYKLSKTLKRSPCSVCGT-IKRYLFNKVAY 146

Query: 135 QLGADVLATGHYI 147
             G  V+ATGH +
Sbjct: 147 DNGFSVIATGHNL 159


>gi|330508540|ref|YP_004384968.1| hypothetical protein MCON_2761 [Methanosaeta concilii GP-6]
 gi|328929348|gb|AEB69150.1| conserved hypothetical protein TIGR00269 [Methanosaeta concilii
           GP-6]
          Length = 308

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL------LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           K  R+ VA+SGG DS   A L      L     +++ +T              +      
Sbjct: 46  KGERIAVAVSGGKDS--TALLFALSRVLAEKEVEMVALT---------VDEGIAGYRDDT 94

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +  A+R+   + V   +  ++E +              G    PC  C    K + L   
Sbjct: 95  IVAAKRIARQMGVEQVIISFQEEY-----GWSLDEMVVGAEVAPCTYCGVFRK-NALNCA 148

Query: 133 TRQLGADVLATGH 145
            + LG   LATGH
Sbjct: 149 AKSLGVTKLATGH 161


>gi|147900590|ref|NP_001080795.1| argininosuccinate synthase [Xenopus laevis]
 gi|82209710|sp|Q7ZWM4|ASSY_XENLA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|28422224|gb|AAH46941.1| Ass-prov protein [Xenopus laevis]
          Length = 411

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  G+DVI   L                  +D  +AR+    
Sbjct: 8   VVLAYSGGLDTSCILVWLKEQGFDVIA-YLANI------------GQNEDFEEARKKAVN 54

Query: 83  INV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           +     Y+ D  ++F    I P           Y  G +   PC+   +       + + 
Sbjct: 55  LGAKKVYIEDIRQQFVEEYIWPAVQANAIYEDRYLLGTSLARPCIAKKQ-------VEIA 107

Query: 134 RQLGADVLATG 144
           ++  A+ ++ G
Sbjct: 108 KKEAAEYVSHG 118


>gi|119719832|ref|YP_920327.1| PP-loop domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524952|gb|ABL78324.1| PP-loop domain protein [Thermofilum pendens Hrk 5]
          Length = 328

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  RV VA+SGG DS     L        G +V GV         A     +      + 
Sbjct: 47  RGERVAVAVSGGKDSLTTLYLFSRFAGELGVEVFGV---------AVDEGIAGYREYKLE 97

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R +   + V   V  ++E F   +     +    G    PC  C    ++  +    R
Sbjct: 98  ALRSLAGRLGVEIIVGSFKEYFGFTLDEAVKALREKGFKVKPCSVCGVLRRY-VMNHAAR 156

Query: 135 QLGADVLATGHYIRSRLYV 153
           + GAD LATGH +   + V
Sbjct: 157 EAGADKLATGHNLDDEVQV 175


>gi|222100295|ref|YP_002534863.1| glutamine-dependent NAD(+) synthetase [Thermotoga neapolitana DSM
           4359]
 gi|221572685|gb|ACM23497.1| glutamine-dependent NAD(+) synthetase [Thermotoga neapolitana DSM
           4359]
          Length = 555

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VA +     G + V GV +                +   + DA+++
Sbjct: 296 KVVIGLSGGMDSSLVAVIATEALGKENVKGVLM-----------PSMYTSKSSLEDAQKL 344

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQL 136
            + + +  ++    + FR+   +       AG+   P +        ++ + L++++ + 
Sbjct: 345 AENLGIETFIIPITDVFRS--YLDALKEVFAGK--EPDITEENIQARIRGNYLMALSNKF 400

Query: 137 GADVLATG 144
           G  VL TG
Sbjct: 401 GWLVLTTG 408


>gi|153833546|ref|ZP_01986213.1| GMP synthase (glutamine-hydrolyzing) [Vibrio harveyi HY01]
 gi|156973390|ref|YP_001444297.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio harveyi ATCC BAA-1116]
 gi|226739764|sp|A7MU26|GUAA_VIBHB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148870197|gb|EDL69138.1| GMP synthase (glutamine-hydrolyzing) [Vibrio harveyi HY01]
 gi|156524984|gb|ABU70070.1| hypothetical protein VIBHAR_01077 [Vibrio harveyi ATCC BAA-1116]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEDRF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|119025937|ref|YP_909782.1| argininosuccinate synthase [Bifidobacterium adolescentis ATCC
           15703]
 gi|171473028|sp|A1A1W7|ASSY_BIFAA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118765521|dbj|BAF39700.1| argininosuccinate synthase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 418

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++ +            +A    
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGAVEA---- 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F N   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 68  -------YVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFGAD 120

Query: 140 VLATG 144
            ++ G
Sbjct: 121 TISHG 125


>gi|326390081|ref|ZP_08211643.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993946|gb|EGD52376.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 300

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 21/133 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            KD RV+V +SGG DS +    +L ++GY+V+ + +      + S R             
Sbjct: 45  KKDDRVLVVVSGGKDS-MALWDVLAKEGYNVVAMYI-NLGIGEYSNRSQEV--------V 94

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTR 134
                  N+   V + +E F           Y   +T    PC  C   +K      V  
Sbjct: 95  ENFAKKNNLPLIVKNIKEEFG-------LDIYKLSKTLKRSPCSVCGT-IKRYLFNKVAY 146

Query: 135 QLGADVLATGHYI 147
             G  V+ATGH +
Sbjct: 147 DNGFSVIATGHNL 159


>gi|325067193|ref|ZP_08125866.1| argininosuccinate synthase [Actinomyces oris K20]
          Length = 407

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              RVV+A SGG+D+SV    +    G +V+ V                   G+D+   R
Sbjct: 4   HKDRVVLAYSGGLDTSVAIGWIGEATGREVVAV------------AVDVGQGGEDLEVIR 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +       V  YV D  + F N   +P   + A  E   P V   +R V    L+   R+
Sbjct: 52  QRALDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAARE 111

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 112 FGAHTVAHG 120


>gi|307264980|ref|ZP_07546541.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919965|gb|EFN50178.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 300

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 21/133 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            KD RV+V +SGG DS +    +L ++GY+V+ + +      + S R             
Sbjct: 45  KKDDRVLVVVSGGKDS-MALWDVLAKEGYNVVAMYI-NLGIGEYSNRSQEV--------V 94

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTR 134
                  N+   V + +E F           Y   +T    PC  C   +K      V  
Sbjct: 95  ENFAKKNNLPLIVKNIKEEFG-------LDIYKLSKTLKRSPCSVCGT-IKRYLFNKVAY 146

Query: 135 QLGADVLATGHYI 147
             G  V+ATGH +
Sbjct: 147 DNGFSVIATGHNL 159


>gi|294500187|ref|YP_003563887.1| hypothetical protein BMQ_3431 [Bacillus megaterium QM B1551]
 gi|294350124|gb|ADE70453.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 269

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 52/217 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           VVVA SGGVDS+    LLK      G + VI VT                    ++ +A+
Sbjct: 19  VVVAFSGGVDST---FLLKVAVETLGNENVIAVT-----------ADSETYPSSELEEAK 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +   I V H + +  E             Y+       C  C  ++ F  L  +  +  
Sbjct: 65  VLARQIGVRHQIIETSEL--------AIPGYSE-NNKNRCYFCKSSL-FDHLKPIIEEYQ 114

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +  G          D  + R  M    +                L    F      K
Sbjct: 115 FKTIVYGAIA------DDMNEHRPGMKAAKEKG---------IRGPLLEANLF------K 153

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           + +R+L++++ L   +K      C   +  Y + + +
Sbjct: 154 KEIRELSQQLELPTWNKPSF--ACLSSRIAYGEYITK 188


>gi|289207540|ref|YP_003459606.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix]
 gi|288943171|gb|ADC70870.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix]
          Length = 407

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 66/200 (33%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV+   L+   G +VI  T                  G++V  AR   
Sbjct: 7   RVVLAYSGGLDTSVILKWLEDQYGCEVITFT-------------ADLGQGEEVEPARAKA 53

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V   Y+ D  E F    + P           Y  G          R +    ++ +
Sbjct: 54  EALGVKQIYIEDLRETFVRDYVFPMFRANTIYEGEYLLG------TSIARPLIARRMVEI 107

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + GAD +A G                           DQ              +RF L
Sbjct: 108 AEETGADAIAHG---------------------ATGKGNDQ--------------VRFEL 132

Query: 193 GDM-KKESVRDLA--REMGL 209
           G    K  +R +A  RE  L
Sbjct: 133 GAYALKPGIRVIAPWREWDL 152


>gi|149917117|ref|ZP_01905617.1| hypothetical protein PPSIR1_39585 [Plesiocystis pacifica SIR-1]
 gi|149822033|gb|EDM81426.1| hypothetical protein PPSIR1_39585 [Plesiocystis pacifica SIR-1]
          Length = 277

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 70/198 (35%), Gaps = 53/198 (26%)

Query: 24  VVAMSGGVDS---SVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V A SGGVDS   +VVAA +       V GV+  L  S +A               A RV
Sbjct: 28  VTAFSGGVDSTLVAVVAARVHGERALAVTGVSPSLAESERAF--------------ASRV 73

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H + D  E      I        AG+    C  C   + F  L+ + +  G  
Sbjct: 74  AAELGLRHRLVDTHE------IERAGYQANAGD---RCYHCKTEL-FERLVVLAKAEGFA 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
            + +G        + D G  R  M    +                   +R PL   ++ K
Sbjct: 124 CVVSG------DNLDDLGGHRPGMLAAEENA-----------------VRKPLIEAELGK 160

Query: 198 ESVRDLAREMGLDIADKS 215
           + +R LAR +GL    K 
Sbjct: 161 DQIRALARHLGLPNHAKP 178


>gi|83647669|ref|YP_436104.1| argininosuccinate synthase [Hahella chejuensis KCTC 2396]
 gi|119361279|sp|Q2SCE5|ASSY_HAHCH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|83635712|gb|ABC31679.1| argininosuccinate synthase [Hahella chejuensis KCTC 2396]
          Length = 404

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+ + YD   VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVKWLQEN-YDCEVVTF-----------TADIGQGEEVEPARAKAE 53

Query: 82  TINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   ++ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  KLGVKQIFIEDLREEFARDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LVEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|313123027|ref|YP_004033286.1| bifunctional gmp synthase/glutamine amidotransferase protein
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279590|gb|ADQ60309.1| Bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +  +L+   + +   D  V++ +SGGVDSSV A LL +  G  +  +          
Sbjct: 204 TMDDFIKLSVDSIREEVGDANVILGISGGVDSSVTATLLHKAIGSQLTAIF--------- 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                      D   A  + + + V+    D ++RF + +                 +  
Sbjct: 255 VDHGLLRKNESDEVMA-ALKEGLGVNIVRVDAKDRFMSKLAGVTDPEKKRK------IIG 307

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V+        +++  A  LA G      +  G D        +           +  
Sbjct: 308 NEFVQV--FNDEAKKIKDAKFLAQGTLYTDVIESGTDT---AHTIKSHHN-------VGG 355

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +     L  PL  + K+ VR L  ++GL 
Sbjct: 356 LPEDMQFKLIEPLRQLFKDEVRVLGEKLGLP 386


>gi|222152184|ref|YP_002561344.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Macrococcus caseolyticus JCSC5402]
 gi|254800105|sp|B9E8Y0|GUAA_MACCJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222121313|dbj|BAH18648.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 513

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 34/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ AMSGGVDSSVVA L+ +     IG  +T    +     K +G      D+   +
Sbjct: 218 DRKVICAMSGGVDSSVVAVLIHKA----IGDQLTCIFVDHGLLRKGEG------DMVM-K 266

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQ 135
           +  +  N++    D +ERF + +                         F  L      + 
Sbjct: 267 QFGEGFNMNIIRVDAKERFMSKLAGVSDPEQKRKIIGNE---------FVYLFDEEAAKL 317

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             AD LA G        + + G +     +           +    +    +L  P+  +
Sbjct: 318 KDADFLAQG---TLYTDIIESGTKTAQTIKSHHN-------VGGLPEDMQFELIEPVNTL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+G+ 
Sbjct: 368 FKDEVRALGIELGIP 382


>gi|254472503|ref|ZP_05085903.1| argininosuccinate synthase [Pseudovibrio sp. JE062]
 gi|211958786|gb|EEA93986.1| argininosuccinate synthase [Pseudovibrio sp. JE062]
          Length = 414

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 57/211 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  ARR 
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQAEYGCEVVTFT-------------ADLGQGEELEPARRK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + + +   Y+ D  E F    + P   +       Y  G +    +   R      L+ 
Sbjct: 54  AELLGIREIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKR------LIE 107

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDL 188
           +  + GAD +A G                           DQ  F    +A        +
Sbjct: 108 IAEETGADAVAHG---------------------ATGKGNDQVRFELACYALNPDI--KV 144

Query: 189 RFPLGDMKKE---SVRDLAREMGLDIADKSD 216
             P  D   +    + + A +  + +     
Sbjct: 145 IAPWRDWTLKSRTDLIEFAEQHQIPVPKDKR 175


>gi|322370893|ref|ZP_08045448.1| NH(3)-dependent NAD(+) synthetase [Haladaptatus paucihalophilus
           DX253]
 gi|320549570|gb|EFW91229.1| NH(3)-dependent NAD(+) synthetase [Haladaptatus paucihalophilus
           DX253]
          Length = 557

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 54/204 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSS+ AAL     G + V+GV +    +  AS+            DAR + 
Sbjct: 300 VVVGLSGGIDSSITAALAADALGPENVLGVGMPTRYTSDASEI-----------DARELA 348

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-------RTVKFSDLLSVT 133
           + + +          F +  I     ++    TP+               ++ + L+++ 
Sbjct: 349 ENLGI---------DFLDLPIENTFEAFERELTPILDETPGVTEENVQARIRATTLMAIA 399

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G  +LAT                R  +              + T    +C    P+ 
Sbjct: 400 NEQGRLLLAT--------------SNRSELAVG-----------YTTLYGDMCGALAPIA 434

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
           D  K  V DLAR +        + 
Sbjct: 435 DCPKTFVYDLARHLNEHEETIPER 458


>gi|254456598|ref|ZP_05070027.1| GMP synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083600|gb|EDZ61026.1| GMP synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 520

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSVVA LL +  G  +  +              G     +++   +   
Sbjct: 224 KVICALSGGVDSSVVAQLLNKAIGKKLFCIF----------VNTGLLRKNEEIQVVQTFK 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
             + ++    + E+ F   +                 +  N  +K        +++    
Sbjct: 274 KRLKMNLIYVNAEKEFLKKLSNVSDPEKKRK------IIGNLFIKI--FERYAKKIKNVK 325

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +        +    +           +    ++    L  PL  + K+ 
Sbjct: 326 FLAQGTLYPDLIESKSVTGSQTSKIKSHHN-------VGGLPKRMKLKLVEPLKFLFKDE 378

Query: 200 VRDLAREMGLDIA 212
           VR L  E+ L+  
Sbjct: 379 VRKLGLELNLNNE 391


>gi|118443777|ref|YP_878930.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium novyi NT]
 gi|226738427|sp|A0Q2S8|GUAA_CLONN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118134233|gb|ABK61277.1| GMP synthase [Clostridium novyi NT]
          Length = 512

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V     +     K +G             
Sbjct: 217 DKKVLCALSGGVDSSVAAVLVHKAIGKQLTCVF---VDHGLLRKDEGDQVEAIFK----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    +  ERF   +                 +     ++         +LG 
Sbjct: 269 --KQFDMNLIRVNAGERFLGKLKGVSDPETKRK------IIGEEFIRV--FEEEAGKLGQ 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G       +           +    +     L  PL ++ K
Sbjct: 319 IDFLVQG---TIYPDVVESGTNTSATIKSHHN-------VGGLPEDMQFSLIEPLRELFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 369 DEVRAVGEELGIP 381


>gi|147920090|ref|YP_686151.1| GMP synthase subunit B [uncultured methanogenic archaeon RC-I]
 gi|121690424|sp|Q0W468|GUAAB_UNCMA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|110621547|emb|CAJ36825.1| GMP synthase, glutamine-hydrolyzing [uncultured methanogenic
           archaeon RC-I]
          Length = 305

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 35/192 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + + ++A+SGGVDSSV A L  R  G  +I V            RKG     ++++    
Sbjct: 21  NGKALIALSGGVDSSVCAILAHRALGDRLIPVY-----VDTGLMRKGETDRIREIFKFMN 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                    +V D  +RF NA+                 +     ++      V + L  
Sbjct: 76  P--------HVVDASDRFFNALKGVTDPEAKRK------IVGEMFIRV--FEDVVKGLEV 119

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G     R+    +G  +                    +  +   +  PL D+ K+
Sbjct: 120 DFLIQGTIYPDRIES--EGGIKSHHNVGGLP-----------SVTEFKGIIEPLQDLYKD 166

Query: 199 SVRDLAREMGLD 210
            VR++AR + L 
Sbjct: 167 EVREVARALPLP 178


>gi|172035083|ref|YP_001801584.1| CHP268-containing protein [Cyanothece sp. ATCC 51142]
 gi|171696537|gb|ACB49518.1| CHP268-containing protein [Cyanothece sp. ATCC 51142]
          Length = 276

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 55/220 (25%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M+  +  +L ++ ++      R ++A SGG+DS++VA +     YDV+G      +   A
Sbjct: 1   MLTDKLNQLKTIFVEME----RALIAYSGGIDSTLVAKVA----YDVLG------DRSLA 46

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---C 117
                     +++ DA+    TI + H + + +E                  T  P   C
Sbjct: 47  VTAVSPSLLPEELEDAKIQAATIGIPHELVNTQE------------MNNPNYTSNPVNRC 94

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C   +    L  +  + G   +  G      +   D    R  +    +         
Sbjct: 95  YFCKSEL-HDTLKPLALKRGYPYVVDG------VNADDLRDYRPGIQAAKERG------- 140

Query: 178 FATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKS 215
                      R PL +  + K  VR L++ +GL   DK 
Sbjct: 141 ----------ARSPLAEVGITKLEVRQLSQGLGLPWWDKP 170


>gi|110798619|ref|YP_696182.1| PP-loop family protein [Clostridium perfringens ATCC 13124]
 gi|110802622|ref|YP_698796.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|168208039|ref|ZP_02634044.1| PP-loop family protein [Clostridium perfringens E str. JGS1987]
 gi|168210083|ref|ZP_02635708.1| PP-loop family protein [Clostridium perfringens B str. ATCC 3626]
 gi|168213775|ref|ZP_02639400.1| PP-loop family protein [Clostridium perfringens CPE str. F4969]
 gi|168216881|ref|ZP_02642506.1| PP-loop family protein [Clostridium perfringens NCTC 8239]
 gi|169347271|ref|ZP_02866210.1| PP-loop family protein [Clostridium perfringens C str. JGS1495]
 gi|182624682|ref|ZP_02952463.1| PP-loop family protein [Clostridium perfringens D str. JGS1721]
 gi|110673266|gb|ABG82253.1| PP-loop family protein [Clostridium perfringens ATCC 13124]
 gi|110683123|gb|ABG86493.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|169296667|gb|EDS78798.1| PP-loop family protein [Clostridium perfringens C str. JGS1495]
 gi|170660672|gb|EDT13355.1| PP-loop family protein [Clostridium perfringens E str. JGS1987]
 gi|170711838|gb|EDT24020.1| PP-loop family protein [Clostridium perfringens B str. ATCC 3626]
 gi|170714722|gb|EDT26904.1| PP-loop family protein [Clostridium perfringens CPE str. F4969]
 gi|177910079|gb|EDT72473.1| PP-loop family protein [Clostridium perfringens D str. JGS1721]
 gi|182381048|gb|EDT78527.1| PP-loop family protein [Clostridium perfringens NCTC 8239]
          Length = 345

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 29/136 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ +A+SGG DS ++A L   LK+ G   ++++ + +           +       +
Sbjct: 52  EGDKIAIAISGGKDSLIMAKLFQELKKHGQINFELVFLAM-----DPGYHPQIRELLEDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C  +++  +++D    F   V+   A  Y       PC  C   ++   L   
Sbjct: 107 -------CKYLDIPVHIYD-SGIF--QVVDKIAKDY-------PCYMC-ARMRRGSLYGK 148

Query: 133 TRQLGADVLATGHYIR 148
            ++LG + LA GH+  
Sbjct: 149 AKELGCNKLALGHHFN 164


>gi|37522184|ref|NP_925561.1| GMP synthase [Gloeobacter violaceus PCC 7421]
 gi|44887933|sp|Q7NHC2|GUAA_GLOVI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|35213184|dbj|BAC90556.1| GMP synthetase [Gloeobacter violaceus PCC 7421]
          Length = 551

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 80/255 (31%), Gaps = 59/255 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RK        ++     
Sbjct: 247 DKRVLLALSGGVDSSTLAFLLHRA----IGDNLTCMFIDQGFMRKNEPERLVKLFK---- 298

Query: 80  CDTINVSHYVFDYEERF-----------------RNAVIVPFASS--------YAAGETP 114
            +  ++     D  ERF                     I  F S         Y A  T 
Sbjct: 299 -EQFHIPVAYVDAAERFIVRLEGVSDPEQKRKIIGAEFIRVFESESQRLGPFDYLAQGTL 357

Query: 115 LPCV----DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
            P +      N   K  +   V  ++ +     G     R  + +       + R    E
Sbjct: 358 YPDIIESAGENIDPKTGE--RVAVKIKSHHNVGGLPENLRFKLVE------PLKRLFKDE 409

Query: 171 RDQSYFLFATTQQQLCDLRFP--------LGDMKKESVRDLAREMGLDIADKSDSQDICF 222
             Q        ++ +    FP        LG++ K+ V D+ RE    +  + +      
Sbjct: 410 VRQVGRALGLPEEIVQRQPFPGPGLAIRVLGELTKDKV-DILREADFILRQEVNRSG--- 465

Query: 223 VQQGKYFDVVKRINA 237
            +   Y+     +  
Sbjct: 466 -RYNDYWQSFAVLLP 479


>gi|104773463|ref|YP_618443.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116513450|ref|YP_812356.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275780|sp|Q04CA4|GUAA_LACDB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123378530|sp|Q1GBU7|GUAA_LACDA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|103422544|emb|CAI97137.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116092765|gb|ABJ57918.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125089|gb|ADY84419.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +  +L+   + +   +  V++ +SGGVDSSV A LL +  G  +  +          
Sbjct: 204 TMDDFIKLSVDSIREEVGNANVILGISGGVDSSVTATLLHKAIGSQLTAIF--------- 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                      D   A  + + + V+    D ++RF + +                 +  
Sbjct: 255 VDHGLLRKNESDEVMA-ALKEGLGVNIVRVDAKDRFMSKLAGVTDPEKKRK------IIG 307

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V+        +++  A  LA G      +  G D        +           +  
Sbjct: 308 NEFVQV--FNDEAKKIKDAKFLAQGTLYTDVIESGTDT---AHTIKSHHN-------VGG 355

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +     L  PL  + K+ VR L  ++GL 
Sbjct: 356 LPEDMQFKLIEPLRQLFKDEVRVLGEKLGLP 386


>gi|291523877|emb|CBK89464.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Eubacterium rectale DSM 17629]
          Length = 524

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV+AALL +  G  +  V     +     K +G    G        
Sbjct: 215 DGKVLLALSGGVDSSVLAALLAKAIGKQLTCVF---VDHGLLRKNEGDEVEGVFGK---- 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
              + +++    + +ER+ + +                 +     ++        +++G 
Sbjct: 268 -GGSFDINFVRVNAQERYYSKLAGVTEPERKRK------IIGEEFIRV--FEEEAKKIGK 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +  G  G+          + +               D+  PL ++ K
Sbjct: 319 VDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPEHVDFKDIVEPLRNLFK 370

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 371 DEVRKVGLELGLP 383


>gi|237756468|ref|ZP_04585003.1| glutamine-dependent NAD(+) synthetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691369|gb|EEP60442.1| glutamine-dependent NAD(+) synthetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 573

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DSS+ A +     G + V GV +                + + + DA  
Sbjct: 316 KKVVIGLSGGIDSSLTACIAVDALGKENVKGVLM-----------PSQYTSKESIEDALE 364

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           +   +++  +    +  F +  +  F      G  P    + N    ++ + L++++ + 
Sbjct: 365 LAKNLDIETFTIPIKNIF-DKYLEEF-QEIFKGLKPDT-TEENLQARIRGNILMALSNKF 421

Query: 137 GADVLATG 144
           G  V+ATG
Sbjct: 422 GWIVIATG 429


>gi|126435560|ref|YP_001071251.1| argininosuccinate synthase [Mycobacterium sp. JLS]
 gi|166220993|sp|A3Q0T3|ASSY_MYCSJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|126235360|gb|ABN98760.1| argininosuccinate synthase [Mycobacterium sp. JLS]
          Length = 400

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +            D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEDMDVVRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   S A      P V   +R +    L+   R+    
Sbjct: 61  --------VVDARDEFAENYCLPAIQSNALYMDRYPLVSALSRPLIVKHLVDAAREHKGG 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|302336528|ref|YP_003801735.1| argininosuccinate synthase [Olsenella uli DSM 7084]
 gi|301320368|gb|ADK68855.1| argininosuccinate synthase [Olsenella uli DSM 7084]
          Length = 434

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  + K+ +VV+A SGG+D+SV+   L+   G DV+ +           + +      Q 
Sbjct: 1   MASSSKE-KVVLAYSGGLDTSVMVKWLQVEKGLDVVAIC-----CNVGQESQDLGWVKQK 54

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLS 131
             D   V           D    + + ++    ++    E   P +   +R +  + ++ 
Sbjct: 55  ALDMGAVAA------ESVDMRSEYADQILTKAIAANGLYEGTYPLLSALSRPMISAYMVE 108

Query: 132 VTRQLGADVLATG 144
                GA  +A G
Sbjct: 109 AAHHHGAAYIAHG 121


>gi|51894010|ref|YP_076701.1| argininosuccinate synthase [Symbiobacterium thermophilum IAM 14863]
 gi|68566241|sp|Q67KE1|ASSY_SYMTH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|51857699|dbj|BAD41857.1| argininosuccinate synthase [Symbiobacterium thermophilum IAM 14863]
          Length = 401

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 35/202 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + V+A SGG+D+SV    +K             Y++   +         +D+   R+ 
Sbjct: 3   KKKCVLAYSGGLDTSVAIHWIKE-----------NYDADVVALAVDVGANDKDLEFIRQK 51

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
             +I  V  YV+D  + F    I+P   + A  E+        +R +    L+ +  + G
Sbjct: 52  ALSIGAVKSYVYDARKEFAYDFILPTLQANACYESKYYLSAALSRPLIAKLLVQIAEEEG 111

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
           AD +A G                    +  D  R +          Q   +  P+     
Sbjct: 112 ADFVAHG-----------------CTGKGNDQVRFEVSVAALNPNLQ---VLAPVREWGW 151

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            +E   D A++ G+ +    ++
Sbjct: 152 SREEEIDYAQKHGIPVPVGKEN 173


>gi|291528653|emb|CBK94239.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Eubacterium rectale M104/1]
          Length = 524

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV+AALL +  G  +  V     +     K +G    G        
Sbjct: 215 DGKVLLALSGGVDSSVLAALLAKAIGKQLTCVF---VDHGLLRKNEGDEVEGVFGK---- 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
              + +++    + +ER+ + +                 +     ++        +++G 
Sbjct: 268 -GGSFDINFVRVNAQERYYSKLAGVTEPERKRK------IIGEEFIRV--FEEEAKKIGK 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +  G  G+          + +               D+  PL ++ K
Sbjct: 319 VDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPEHVDFKDIVEPLRNLFK 370

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 371 DEVRKVGLELGLP 383


>gi|254425319|ref|ZP_05039037.1| asparagine synthase (glutamine-hydrolyzing) [Synechococcus sp. PCC
           7335]
 gi|196192808|gb|EDX87772.1| asparagine synthase (glutamine-hydrolyzing) [Synechococcus sp. PCC
           7335]
          Length = 496

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 22/137 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D+ V V +SGG+DSS+VAAL+K+               ++            D+  AR 
Sbjct: 218 SDVPVGVFLSGGLDSSIVAALMKQQ-------------VKELHSFSVGLSHSPDLRAARL 264

Query: 79  VCDTINVSHYVFDYEERFRNAV---IVPFASSYAAG--ETPLPCVDCNR----TVKFSDL 129
           V + +   H+ + Y E     V   ++ +  SY      + +PC   +R     VK    
Sbjct: 265 VAEHLGTVHHEYVYSEAEMQTVLSDVIYYLESYDPALVRSAIPCYMVSRLASEYVKVVLS 324

Query: 130 LSVTRQLGADVLATGHY 146
                +L A       Y
Sbjct: 325 GEGADELFAGYSYFAEY 341


>gi|153004390|ref|YP_001378715.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027963|gb|ABS25731.1| GMP synthase, large subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 518

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 24/194 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD  V+ A+SGGVDS+V A L+ R     IG  L+         R G     ++V+    
Sbjct: 216 KDGHVICALSGGVDSAVAALLVHRA----IGDRLRCIFVDNGVLRAGERAQVEEVF---- 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                ++     D   RF             AG T     +  R +   + ++V  +   
Sbjct: 268 -GGMFHLPLVTVDASARFLAR---------LAGVT---DPEQKRKIIGREFIAVFEEQVE 314

Query: 139 DVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           D+ A G   +   +  +  D         P    +   + +    +     L  PL ++ 
Sbjct: 315 DLAAHGERAQFLVQGTLYPDVIESVSFKGPSATIKSH-HNVGGLPEVMKLGLVEPLRELF 373

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 374 KDEVRRLGLELGLP 387


>gi|307942550|ref|ZP_07657898.1| argininosuccinate synthase [Roseibium sp. TrichSKD4]
 gi|307774189|gb|EFO33402.1| argininosuccinate synthase [Roseibium sp. TrichSKD4]
          Length = 406

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQTEFGCEVVTFT-------------ADLGQGEELEPARKK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + + +   Y+ D  E F    + P   +       Y  G +    +   R      L+ 
Sbjct: 54  AEMLGIKEIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKR------LIE 107

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 108 IAEETGADAIAHG 120


>gi|254577235|ref|XP_002494604.1| ZYRO0A05368p [Zygosaccharomyces rouxii]
 gi|238937493|emb|CAR25671.1| ZYRO0A05368p [Zygosaccharomyces rouxii]
          Length = 419

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+ A L   GY+V+   L                  +D   AR 
Sbjct: 2   SKGKVCLAYSGGLDTSVILAWLLEQGYEVVA-FLAN------------VGQEEDFDAARE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I        D  E F   ++ P           Y  G +    V     +      
Sbjct: 49  KALKIGASKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V    G   ++ G
Sbjct: 103 DVAEAEGCFAVSHG 116


>gi|227497662|ref|ZP_03927876.1| argininosuccinate synthase [Actinomyces urogenitalis DSM 15434]
 gi|226832892|gb|EEH65275.1| argininosuccinate synthase [Actinomyces urogenitalis DSM 15434]
          Length = 407

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +    RVV+A SGG+D+SV    +    G +VI            +        G+D+  
Sbjct: 2   SASKDRVVLAYSGGLDTSVAIGWIGEQTGREVI------------TVAVDVGQGGEDLEV 49

Query: 76  ARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
            R+       V  YV D  + F N   +P   + A  E   P V   +R V    L+   
Sbjct: 50  IRQRALDCGAVEAYVADARDEFANEYCMPALKANALYEGKYPLVSAISRPVIAKHLVKAA 109

Query: 134 RQLGADVLATG 144
           RQ GA  +A G
Sbjct: 110 RQFGASTVAHG 120


>gi|229817944|ref|ZP_04448226.1| hypothetical protein BIFANG_03231 [Bifidobacterium angulatum DSM
           20098]
 gi|229784548|gb|EEP20662.1| hypothetical protein BIFANG_03231 [Bifidobacterium angulatum DSM
           20098]
          Length = 412

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++ +            +A    
Sbjct: 6   RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKERALACGAVEA---- 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F N   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 62  -------YVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFGAD 114

Query: 140 VLATG 144
            ++ G
Sbjct: 115 TISHG 119


>gi|167574454|ref|ZP_02367328.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia oklahomensis C6786]
          Length = 539

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|312870558|ref|ZP_07730675.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311093918|gb|EFQ52245.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 40/216 (18%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            + +   L    + K   D +V++ +SGGVDSSV A L+ +             + +   
Sbjct: 204 TMDDFIDLQVEHIRKEVGDKKVILGLSGGVDSSVTAVLIHKA-----------IDDQLTC 252

Query: 62  KRKGSCCAGQDVYD--ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                    ++  D   + +   + V+    D  +RF             AG T     +
Sbjct: 253 IFVDHGLLRKNEADQVMKALNKDLGVNIVKVDAADRFLGK---------LAGVT---DPE 300

Query: 120 CNRTVKFSDLLSV----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
             R +   + + V     +++  AD LA G      +  G D  +     +         
Sbjct: 301 QKRKIIGKEFIEVFNEEAKKIPDADFLAQGTLYTDVIESGTDTAQT---IKSHHN----- 352

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    ++    L  PL  + K+  R+L  ++G+ 
Sbjct: 353 --VGGLPKKLGFKLIEPLRKLFKDETRELGEKLGIP 386


>gi|295100171|emb|CBK89260.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Eubacterium cylindroides T2-87]
          Length = 515

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         +   
Sbjct: 216 DGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVEAVFGPEG-- 270

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 ++    + +ER+ N    V+ P A     GE                     ++
Sbjct: 271 ---PYELNFIRVNAQERYYNKLAGVVEPEAKRKIIGEEF-----------IRVFEEEAKK 316

Query: 136 LGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +GA D L  G      +  G  G+          + +               ++  PL D
Sbjct: 317 IGAVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDHVDFKEIIEPLRD 368

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+G+ 
Sbjct: 369 LFKDEVRKAGLELGIP 384


>gi|289192268|ref|YP_003458209.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938718|gb|ADC69473.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
          Length = 311

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 80/238 (33%), Gaps = 46/238 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-------KRKGSCCAGQD 72
           ++++ + +SGG DS V+A +LK           +L+ +   S                + 
Sbjct: 45  NVKIGIGVSGGKDSLVMAYILK-----------KLFENIPNSKLICFFVDEGIKGFREKA 93

Query: 73  VYDARRVCDTINVSHYVFDYEER----FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
               +  C+  N+   +  +E+         +   + S    G+   PC  C    ++  
Sbjct: 94  KEYVKEFCEEHNLDLKIIKFEDEIGYTLDEIIKNNYLSKLNIGK---PCSFCGVVRRY-L 149

Query: 129 LLSVTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           L     + G D LA GH    + ++ L    +G  + I+    + E            + 
Sbjct: 150 LNKYALKEGCDYLAIGHNLDDFCQTILMNYIEGNIKNIVQFGKEFE-----------GEG 198

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
                 PL  + ++ VR  A    +    +      C      Y   +K+I   +  E
Sbjct: 199 FVKRIKPLKLIPEDEVRLYAEINNIRYQREP-----CPYSSLSYRHRMKKIIEILEKE 251


>gi|269962400|ref|ZP_06176750.1| GMP synthase/glutamine amidotransferase protein [Vibrio harveyi
           1DA3]
 gi|269832896|gb|EEZ87005.1| GMP synthase/glutamine amidotransferase protein [Vibrio harveyi
           1DA3]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E+RF          +      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEDRF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|253579524|ref|ZP_04856793.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849025|gb|EES76986.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 394

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 30/134 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS ++A L   LKR G   ++++ + +                   +
Sbjct: 143 EGDKIAVCISGGKDSMLMAKLLQELKRHGKIHFELVFLVM------------NPGYNADN 190

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   + + +   V      F + +     +         PC  C   ++   L S 
Sbjct: 191 WKIIQDNAELLGIPLTV------FESDIFD-TVAEIEN----NPCYLC-ARMRRGYLYSH 238

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A GH+
Sbjct: 239 AKELGCNKIALGHH 252


>gi|84489152|ref|YP_447384.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|84372471|gb|ABC56741.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 319

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAA----LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  +V+V +SGG DS V       +LK        +TL             S    + + 
Sbjct: 50  KGDKVLVGLSGGKDS-VALLKILNILKEKNI----ITL----EAVTIDEGISGYREEGIR 100

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A+     +++ H++  +++++   +     +     +    C  C    +      V R
Sbjct: 101 IAKETAKALDIKHHIVSFKDKYNFTIDKIMEAEAKCNDAQHACTYCGVFRR-QIFNQVAR 159

Query: 135 QLGADVLATGHYI 147
            + A  LATGH +
Sbjct: 160 DVNATKLATGHNL 172


>gi|88858305|ref|ZP_01132947.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudoalteromonas tunicata D2]
 gi|88819922|gb|EAR29735.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudoalteromonas tunicata D2]
          Length = 525

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 63/200 (31%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLLHRAIGSKLTCVFVDNGLLRLNEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                  D   ++    D E +F   +             G T    +    + K    L
Sbjct: 279 -------DHFGLNIIKVDAEAQFLADLAGLSDPEAKRKAIGHTF-IDIFDAESKK----L 326

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              + LG   +       +    G     +                +          L  
Sbjct: 327 KNAKWLGQGTIYPDVIESAASATGKAHVIKSHHN------------VGGLPDDMEMGLVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+GL 
Sbjct: 375 PLRELFKDEVRKIGLELGLP 394


>gi|320334242|ref|YP_004170953.1| GMP synthase [Deinococcus maricopensis DSM 21211]
 gi|319755531|gb|ADV67288.1| GMP synthase (glutamine-hydrolyzing) [Deinococcus maricopensis DSM
           21211]
          Length = 508

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++A+SGGVDSS +  LL R  G  +  V +                  + V  A R
Sbjct: 213 DGRVLLAISGGVDSSTLGLLLARAVGEKLTAVFI--------DHGLLRLGEREQVEAALR 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
               + V+    D  E+F  A+                 +     ++        R+ G 
Sbjct: 265 P---LGVNLVTVDAREQFLGALAGVSDPEQKRK------IIGREFIR--AFEREAREYGP 313

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +     G       +           +          L  P   + K
Sbjct: 314 FDFLAQGTLYPDVIESA--GGEGAANIKSHHN-------VGGLPDDLAFKLVEPFRTLFK 364

Query: 198 ESVRDLAREMGLD 210
           + VR++AR +GL 
Sbjct: 365 DEVREIARLLGLP 377


>gi|239929411|ref|ZP_04686364.1| GMP synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291437737|ref|ZP_06577127.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340632|gb|EFE67588.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 526

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 69/193 (35%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 224 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D  ERF             A    +   +  R +   + + V  Q  A
Sbjct: 275 VAAT-GVQLKVVDASERF------------LAALKGVSDPEEKRKIIGREFIRVFEQAQA 321

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           +++A        L  G                  +S + +    +     L  PL  + K
Sbjct: 322 EIVADEGPAVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFKLIEPLRQLFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 382 DEVRMVGQELGLP 394


>gi|315586935|gb|ADU41316.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter pylori 35A]
          Length = 508

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEEIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|183221002|ref|YP_001838998.1| GMP synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911097|ref|YP_001962652.1| GMP synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775773|gb|ABZ94074.1| GMP synthase (glutamine-hydrolyzing) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779424|gb|ABZ97722.1| GMP synthetase [glutamine-hydrolyzing] (Glutamine amidotransferase;
           GMP synthetase) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 599

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 54/212 (25%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSCC 68
           K P+   V + +SGGVDSSV   LL +  G D V G+      ++               
Sbjct: 211 KVPEGKNVFLLVSGGVDSSVAYLLLAKALGKDRVKGLLVDTGFMR--------------- 255

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +V D       +     ++D  E F  ++   F                 +     D
Sbjct: 256 -KNEVKDLMDNLHHVGFDLTIWDESEVFYKSLQNEFEPE-------------KKRRIVGD 301

Query: 129 LLSVTR-----QLGADVLATGHYIRSRLYVGDD-----GKRRRIMCRPMDLERDQSYFLF 178
           L    +      LG D     H++  +  +  D     G +     +       Q   + 
Sbjct: 302 LFLEAQGKATTSLGLDA---EHWLLGQGTIYPDTIESGGTKHSHKIKTHHNRVPQ---IE 355

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           A  ++    +  P+ D+ K+ VR+L R +GL 
Sbjct: 356 ALIRE--GKIVEPIADLYKDEVRELGRTLGLP 385


>gi|160901537|ref|YP_001567118.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Petrotoga mobilis SJ95]
 gi|226739655|sp|A9BER7|GUAA_PETMO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|160359181|gb|ABX30795.1| GMP synthase, large subunit [Petrotoga mobilis SJ95]
          Length = 507

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----LYNSRKASKRKGSCCAGQDVYD 75
           D + ++A+SGGVDSSV A L  R     IG  L+     +   + ++ +      +D   
Sbjct: 210 DKKAIIALSGGVDSSVAAVLTHRA----IGNNLKAIFVNHGFLRMNEVEEVESTFRDY-- 263

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----- 130
                  + ++    D +ERF +            G T     +  R +   + +     
Sbjct: 264 -------MGLNLTTVDAQERFLSK---------LKGVT---DPEQKRKIIGEEFIRVFEQ 304

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              ++ G + L  G      +     GK+   +    +        +    +     +  
Sbjct: 305 EAKKEEGCEYLIQGTIYSDVIESAKSGKKTFKIKSHHN--------VGGLPEDIDLKIVE 356

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +   +GL 
Sbjct: 357 PLKELFKDEVRSVGEILGLP 376


>gi|332037918|gb|EGI74367.1| GMP synthase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 525

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGAKLTCVFVDNGLLRLNEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKFSDLL 130
                  +   ++    + EE+F N           AG++          +  +      
Sbjct: 279 -------NKFGLNIVKVEAEEQFLND---------LAGKSDPEDKRKAIGHTFINV--FD 320

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L  A  LA G      +        +  + +           +          L 
Sbjct: 321 EQAKKLKNAKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMKMGLV 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 374 EPLRELFKDEVRKIGLELGLP 394


>gi|297195442|ref|ZP_06912840.1| argininosuccinate synthase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719181|gb|EDY63089.1| argininosuccinate synthase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 404

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +   + P   RVV+A SGG+D+SV    + +  G +VI V                   G
Sbjct: 1   MHRKEKPVTERVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGG 48

Query: 71  QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSD 128
           +D+   R+       V   V D ++ F     +P   + A      P V   +R      
Sbjct: 49  EDLDVIRKRALACGAVEAEVADAKDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKH 108

Query: 129 LLSVTRQLGADVLATG 144
           L++  ++ GA  +A G
Sbjct: 109 LVAAAKKHGATTVAHG 124


>gi|254166597|ref|ZP_04873451.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
 gi|289596163|ref|YP_003482859.1| GMP synthase, large subunit [Aciduliprofundum boonei T469]
 gi|197624207|gb|EDY36768.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
 gi|289533950|gb|ADD08297.1| GMP synthase, large subunit [Aciduliprofundum boonei T469]
          Length = 312

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 38/205 (18%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN    + ++A SGGVDS+V A L+ +  G  ++ + +     RK   ++          
Sbjct: 16  KNEIRGKAIIACSGGVDSTVAAVLVHKAIGDKLLAIFVDTGFMRKNEAKEIDGLFS---- 71

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLS 131
                   + +++ + D    F  A+              +   +  R +   KF ++  
Sbjct: 72  -------RMGLNYKIVDASREFIEALKG------------VEDPEKKRKIIGAKFIEVFE 112

Query: 132 V-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               + GA+ L  G      +   + G   R   +           +    ++    L  
Sbjct: 113 REAEEFGAEYLVQGTIAPDWI---ESGGGLRDTIKSHHN-------VGGLPEKMNLKLVE 162

Query: 191 PLGDMKKESVRDLAREMGLDIADKS 215
           PL ++ K+ VR++AR   L+I ++ 
Sbjct: 163 PLRELYKDEVREIARFFNLEIKERQ 187


>gi|255514114|gb|EET90377.1| thiamine biosynthesis protein [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 395

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 46/212 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R VV +SGG+DS V A    R G+DV+ + +  Y+         +  A +      ++  
Sbjct: 177 RAVVLLSGGIDSPVAAFYAMRRGFDVVYLHIHGYDDP------HTAMASKMHELVGQLAK 230

Query: 82  TINVSHYVFDYEERFRNAVI-VPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGA 138
                          +  V   PF     A     P  +     +F  LL   +  ++  
Sbjct: 231 YSG------------KTRVYYAPFHIFQMAAMGSAPRYELVLFKRFIYLLSEKMADEMNI 278

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ--LCDLRF-PLGDM 195
           D + TG  +                          S  +      Q  +  L F PL   
Sbjct: 279 DAIVTGESLGQVA----------------------SQTVSNLGSAQSGVRHLIFRPLIGF 316

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
            K  + ++AR +G         +D+C ++   
Sbjct: 317 DKNEIIEMARRIGTYDISIKPYRDVCSIKAKN 348


>gi|225176011|ref|ZP_03730003.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168599|gb|EEG77401.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 511

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 44/201 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D +VV  +SGGVDSSV A L+ +     IG  +T    +     K +           A
Sbjct: 215 EDEQVVCGLSGGVDSSVAAVLVHKA----IGDRLTCIFVDHGLLRKNE-----------A 259

Query: 77  RRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLP--CVDCNRTVKFSDL 129
            +V +T         +   F   VI       F    A    P     +  N  ++  + 
Sbjct: 260 EQVMET---------FSGDFNMKVIKADEQDNFLGKLAGVTDPEEKRKIIGNEFIRVFE- 309

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +    D L  G        V + G     + +           +    +     L 
Sbjct: 310 REAAKIAQIDYLVQG---TLYTDVIESGTETAALIKSHHN-------VGGLPEDMKFKLI 359

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR +  E+G+ 
Sbjct: 360 EPLNHLFKDEVRKVGEELGMP 380


>gi|312884312|ref|ZP_07744021.1| GMP synthase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368085|gb|EFP95628.1| GMP synthase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 517

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 37/195 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G           
Sbjct: 222 VILGLSGGVDSSVVAMLVHRAIGSKLTCVFVDNGLLRLNEGQQVMDMFG----------- 270

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               D   ++    D EERF         S+      P         V        +++L
Sbjct: 271 ----DKFGLNIIKVDAEERF--------LSALEGKSDPEDKRKTIGHVFVDVFDEESKKL 318

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             A  LA G      +        +  + +           +          L  PL ++
Sbjct: 319 KNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPLREL 371

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 372 FKDEVRKIGLELGLP 386


>gi|268610850|ref|ZP_06144577.1| PP-loop domain-containing protein [Ruminococcus flavefaciens FD-1]
          Length = 248

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 26/130 (20%)

Query: 22  RVVVAMSGGVDSSVVAA---LLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS V+     LL+R     YD+ G+TL           KG   A  D   
Sbjct: 23  RICVGVSGGKDSMVMLYGLALLRRFIGINYDIAGLTL----DPCFGGVKGDYSAISDF-- 76

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C   ++ ++V   E +    V           + P PC  C   ++   L + T++
Sbjct: 77  ----CAEHDIEYHVV--ETQIGEIVFD-------VRKEPNPCSLC-ARMRRGALHNETKK 122

Query: 136 LGADVLATGH 145
           LG + +A GH
Sbjct: 123 LGCNKIALGH 132


>gi|262381387|ref|ZP_06074525.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296564|gb|EEY84494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 438

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 24/130 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D  V+V +SGG DS  VA L  L R GY  I +    +   + S R        D   A
Sbjct: 17  EDRPVLVGLSGGADS--VALLGVLVRLGYPCIALHCNFHLRGEESDR--------DEAFA 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +++ V  +  D+        I      + + E         R ++++    +  +L
Sbjct: 67  CEFAESLEVPFHKIDF------DTISYAGEKHLSIE------MAARELRYAWFEEMRERL 114

Query: 137 GADVLATGHY 146
           G    A  H+
Sbjct: 115 GGQATAVAHH 124


>gi|255013262|ref|ZP_05285388.1| putative cell-cycle protein [Bacteroides sp. 2_1_7]
          Length = 438

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 24/130 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D  V+V +SGG DS  VA L  L R GY  I +    +   + S R        D   A
Sbjct: 17  EDRPVLVGLSGGADS--VALLGVLVRLGYPCIALHCNFHLRGEESDR--------DEAFA 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +++ V  +  D+        I      + + E         R ++++    +  +L
Sbjct: 67  CEFAESLEVPFHKIDF------DTISYAGEKHLSIE------MAARELRYAWFEEMRERL 114

Query: 137 GADVLATGHY 146
           G    A  H+
Sbjct: 115 GGQATAVAHH 124


>gi|119512578|ref|ZP_01631655.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nodularia spumigena CCY9414]
 gi|119462778|gb|EAW43738.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nodularia spumigena CCY9414]
          Length = 539

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++A+SGGVDSS +A LL K  G  +  V +      +   RK        ++    
Sbjct: 235 DKRVLLALSGGVDSSTLAFLLYKAIGEQLTCVFI-----DQGFMRKLEPERLLKLFK--- 286

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             +  ++        +RF N +                    +  ++       +++LG 
Sbjct: 287 --EQFHIPVEYVMARDRFLNMIEGITDPEEKRRR------IGHEFIQV--FEETSKRLGH 336

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +   D     +   R     +   + +    +     L  PL  + K
Sbjct: 337 FDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFK 395

Query: 198 ESVRDLAREMGLD 210
           + VR + R +GL 
Sbjct: 396 DEVRKVGRSIGLP 408


>gi|328950002|ref|YP_004367337.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450326|gb|AEB11227.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 328

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  RV+VA+SGG DS +     L R GY+  G+ +QL              + +      
Sbjct: 46  EGDRVLVAISGGKDS-LALWEVLTRLGYEATGLHIQL---------GIGEYSERAYEVTT 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R      +   V D  E +   V     ++   G   + C  C  + ++  +  V R+ G
Sbjct: 96  RFARERGLPLIVVDLAESYGLGVPELSLAT---GR--VACSGCGLSKRY-LMNEVAREEG 149

Query: 138 ADVLATGHYI 147
            +V+ATGH +
Sbjct: 150 FNVVATGHNL 159


>gi|292656012|ref|YP_003535909.1| NAD+ synthetase [Haloferax volcanii DS2]
 gi|291370157|gb|ADE02384.1| NAD+ synthetase [Haloferax volcanii DS2]
          Length = 276

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 48/192 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G + + G+ +                    + DA  V +
Sbjct: 46  VIGLSGGIDSTLTAFLAVEALGKESLHGLVM-----------PSVANDEDMMSDAEGVAE 94

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + V + +                  ET            F           A   
Sbjct: 95  MLGIEYDVVEIQPI---------------AETF-----------FDTFPEAADDRMA--- 125

Query: 142 ATGHYIRSRLYVG---DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           A   Y+R+R  +     + + R ++      E    YF     Q   C+   P+G++ K+
Sbjct: 126 AGNVYVRTRAVLNYFVANHENRIVLGTGNRAEAMTGYFTKYGDQAVDCN---PIGNLYKQ 182

Query: 199 SVRDLAREMGLD 210
            VR LA  +G+ 
Sbjct: 183 QVRQLAAHVGVP 194


>gi|254779027|ref|YP_003057132.1| NAD synthetase [Helicobacter pylori B38]
 gi|254000938|emb|CAX28876.1| NH(3)-dependent NAD(+) synthetase [Helicobacter pylori B38]
          Length = 260

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 76/217 (35%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSASMPESKTDALNLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       + +        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDKIFGSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                   + L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SNSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LAR + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELARRLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|188997459|ref|YP_001931710.1| NAD+ synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932526|gb|ACD67156.1| NAD+ synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 573

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DSS+ A +     G + V GV +                + + + DA  
Sbjct: 316 KKVVIGLSGGIDSSLTACIAVDALGKENVKGVLM-----------PSHYTSKESIEDAIE 364

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           +   +++  +    +  F +  +  F      G  P    + N    ++ + L++++ + 
Sbjct: 365 LAKNLDIETFTIPIKNIF-DKYLEEF-QEIFKGLKPDT-TEENLQARIRGNILMALSNKF 421

Query: 137 GADVLATG 144
           G  V+ATG
Sbjct: 422 GWIVIATG 429


>gi|297619697|ref|YP_003707802.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
 gi|297378674|gb|ADI36829.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
          Length = 275

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 22/141 (15%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           N L++     + + +VA SGGVDS+V A + K           +L+ +   +        
Sbjct: 44  NFLNITYEKSNSKALVAFSGGVDSTVSALIAK-----------KLFKTELITVNSPIILN 92

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFA-SSYAAGETPLPCVDCNRTVKFSD 128
            Q   +   + + + + H   ++ +   + +        Y       PC  C+  ++ + 
Sbjct: 93  AQQKQEISDLANKLQLPH---NFLDVDLSEIKENTLKKKYH------PCGKCHSLIE-NV 142

Query: 129 LLSVTRQLGADVLATGHYIRS 149
            L+   + G D +  G  + +
Sbjct: 143 ALNYALKNGYDYIIYGDMLST 163


>gi|331270424|ref|YP_004396916.1| hypothetical protein CbC4_2254 [Clostridium botulinum BKT015925]
 gi|329126974|gb|AEB76919.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 239

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 29/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   KR   + +++I +TL              
Sbjct: 14  DFDLIQAGDKIAVGLSGGKDSITLLYLLNAYKRFSPEPFNLIAITL-------------D 60

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             AG D  +   +C  +NV +Y+  ++ R +  V      S        PC  C   ++ 
Sbjct: 61  PGAGADFSEMIHICKELNVPYYL--FKTRIKEIVFDIRKES-------NPCSLC-ANLRR 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L    ++LG + +A GH+    +  
Sbjct: 111 GSLNDHAKKLGCNKIALGHHKNDAIET 137


>gi|328952126|ref|YP_004369460.1| protein of unknown function DUF814 [Desulfobacca acetoxidans DSM
           11109]
 gi|328452450|gb|AEB08279.1| protein of unknown function DUF814 [Desulfobacca acetoxidans DSM
           11109]
          Length = 328

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 54/237 (22%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
             SGG+DS + A +L++   +V G+                     D   A +    I++
Sbjct: 11  LFSGGLDSMLAALVLRQQDIEVTGLVF--------------VTPFFDAVQAEKSAAAISL 56

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----GADVL 141
              + D  +RF   +  P    +  G    PC+DC+       +L    Q+    G D L
Sbjct: 57  PLRIEDLTDRFLPLIFDP---PHGFGRWMNPCIDCHL-----LMLRAAGQIMETEGYDFL 108

Query: 142 ATGHYIRSRLYVGDDG---------KRRRIMCRPMD--------LERDQSYFLFATTQQQ 184
            TG  +  R +  + G             ++ RP+          ER+Q        +QQ
Sbjct: 109 FTGEVLGQRPFSQNKGSLNLIAKQSGYPDLLVRPLSARLLKETRPEREQ-----LLDRQQ 163

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           L ++    G  +K  + +LA   GL           C +   KY   ++ +      
Sbjct: 164 LLNIS---GRGRKRQM-ELATRFGLTSYPAP--AGGCLLADPKYAARLQDLLQHQPR 214


>gi|222099463|ref|YP_002534031.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
 gi|221571853|gb|ACM22665.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
          Length = 327

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D ++++A+SGG DS V    +LK+ GY+V  + ++       + R G     Q++    
Sbjct: 69  RDSKILIAVSGGKDS-VSLWHMLKKLGYEVDALFIR-------AGRSGMVQKAQEI--VE 118

Query: 78  RVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +  + +    ++ D  E F       I              P       V+   +     
Sbjct: 119 KNAELLGTKLHIVDATEYFEGLSTQEISIMLRR--------PVCSICGVVRRYLMNKFAY 170

Query: 135 QLGADVLATGHYIR 148
           + G DV+ TGH + 
Sbjct: 171 ENGYDVVVTGHNLN 184


>gi|195396114|ref|XP_002056677.1| GJ11071 [Drosophila virilis]
 gi|194143386|gb|EDW59789.1| GJ11071 [Drosophila virilis]
          Length = 417

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S +   L    Y+VI V                    +D   AR+   
Sbjct: 5   KVILAYSGGLDTSCILKWLLEQRYEVICV-------------LADVGQQEDFEAARQKAL 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
            I      V D +  F    I P           Y  G +   PC+          L+  
Sbjct: 52  KIGAKEVIVADIKRNFAEQYIWPAIQMGLIYEERYLLGTSLARPCISV-------ALIEA 104

Query: 133 TRQLGADVLATG 144
            R+ GA  LA G
Sbjct: 105 ARRHGAKYLAHG 116


>gi|330817413|ref|YP_004361118.1| GMP synthase, large subunit [Burkholderia gladioli BSR3]
 gi|327369806|gb|AEA61162.1| GMP synthase, large subunit [Burkholderia gladioli BSR3]
          Length = 539

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGQMVLDMFQGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQSE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLSNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|157364390|ref|YP_001471157.1| NAD+ synthetase [Thermotoga lettingae TMO]
 gi|157314994|gb|ABV34093.1| NAD+ synthetase [Thermotoga lettingae TMO]
          Length = 582

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A  L + D  K      VV+ +SGG+DS++   +     G D V GV++        
Sbjct: 302 VYHALVLGTRDYLKKNGIKNVVIGLSGGIDSALTCCIAVDALGPDHVTGVSM-------- 353

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA--AGETPLPCV 118
               G   +   + DA  +   +N+ + V    E +       F  S     G+ P    
Sbjct: 354 ---PGPYSSTHSLEDAELLAKNLNIRYLVIPINEIYET-----FLKSLKPVFGDLPFDVA 405

Query: 119 DCNRTVKFSD--LLSVTRQLGADVLATG 144
           + N   +     L++++ + G  VL TG
Sbjct: 406 EENIQARIRGVILMALSNKFGWLVLTTG 433


>gi|289522228|ref|ZP_06439082.1| GMP synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504064|gb|EFD25228.1| GMP synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 514

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 34/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   D +V+ A+SGGVDS+V A L +R  G  +  V          +         +
Sbjct: 210 QISQTVGDGKVISALSGGVDSTVAAVLTQRAVGNRLYCVF--------VNTGLLRLDEAE 261

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           +V    R    +NV +   D  E F  A   V  P     A G T +             
Sbjct: 262 NVLSVYRNELKLNVRY--VDASEEFLKALKGVTDPEEKRKAVGRTFIEV----------- 308

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 ++G A  L  G      +  G  GK   ++    +        +    ++    
Sbjct: 309 FEREAEKVGDAKWLLQGTLYPDVIESGRQGKGASVIKTHHN--------VGGLPEEMKLK 360

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL D+ K+ VR +   +G+ 
Sbjct: 361 LIEPLKDLFKDEVRAIGSILGIP 383


>gi|219850754|ref|YP_002465186.1| GMP synthase subunit B [Methanosphaerula palustris E1-9c]
 gi|254799664|sp|B8GIB2|GUAAB_METPE RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|219545013|gb|ACL15463.1| GMP synthase, large subunit [Methanosphaerula palustris E1-9c]
          Length = 305

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 35/199 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RVV+A+SGGVDSSV AAL  +  G  +  +            RKG     +
Sbjct: 14  EIRELTADARVVMALSGGVDSSVCAALAAQAIGERLEPIY-----VDTGLMRKGETDRIR 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +          +++  + D  + F +A+                 +   R ++      
Sbjct: 69  HL--------FGHLNLRIVDASDEFLDALAGVADPETKRK------IIGERFIRV--FER 112

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GA VL  G     R+   + G +       M L                  +  P
Sbjct: 113 EAEKTGATVLLQGTIYPDRIES-EGGIKSHHNVGGMPLG------------IAFTQVLEP 159

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR++A  +GL 
Sbjct: 160 LRDLYKDEVREVAGALGLP 178


>gi|325298570|ref|YP_004258487.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324318123|gb|ADY36014.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 532

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            L +   + +VV+ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 231 HLKEQLGNDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNE----FRN 283

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++D     + + ++    D  E+F             AG T  P  +  R +     + 
Sbjct: 284 VLHDY----ECLGLNVIGVDASEKFFTE---------LAGVT-EP--ERKRKIIGKGFID 327

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  +  A  +    ++       D  +   I    +    +    +    ++    L  P
Sbjct: 328 VFDE-EAHKINDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEP 382

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 383 LRLLFKDEVRRVGRELGMP 401


>gi|254360802|ref|ZP_04976949.1| GMP synthase (glutamine-hydrolyzing) [Mannheimia haemolytica
           PHL213]
 gi|153092276|gb|EDN73345.1| GMP synthase (glutamine-hydrolyzing) [Mannheimia haemolytica
           PHL213]
          Length = 523

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLS 131
                  +   ++    + E+RF  A           G    P        K        
Sbjct: 277 -------NKFGLNIVRVNAEDRFLEA---------LKGLD-EPEAKRKTIGKVFVDVFDD 319

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +++L     LA G      +        +  + +           +          L  
Sbjct: 320 ESKKLSSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVE 372

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +   +GL 
Sbjct: 373 PLRELFKDEVRKIGLALGLP 392


>gi|159185316|ref|NP_355604.2| argininosuccinate synthase [Agrobacterium tumefaciens str. C58]
 gi|24211505|sp|Q8UC31|ASSY_AGRT5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|159140573|gb|AAK88389.2| argininosuccinate synthase [Agrobacterium tumefaciens str. C58]
          Length = 407

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 18  PKD-MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD  +VV+A SGG+D+S++   L+   G +V+  T                  G+++  
Sbjct: 4   PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEP 50

Query: 76  ARRVCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVT 133
           AR+  + + +      D  E F    + P   + A  E          R +    L+ + 
Sbjct: 51  ARKKAEMLGIKEIFVEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 110

Query: 134 RQLGADVLATG 144
           ++ GAD +A G
Sbjct: 111 KKTGADAIAHG 121


>gi|15790889|ref|NP_280713.1| NAD synthetase [Halobacterium sp. NRC-1]
 gi|169236634|ref|YP_001689834.1| NAD synthetase [Halobacterium salinarum R1]
 gi|25090799|sp|Q9HNM7|NADE_HALSA RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|229485729|sp|B0R6W9|NADE_HALS3 RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|10581458|gb|AAG20193.1| NAD+ synthetase [Halobacterium sp. NRC-1]
 gi|167727700|emb|CAP14488.1| NAD( ) synthase (glutamine-hydrolyzing) [Halobacterium salinarum
           R1]
          Length = 268

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 42/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+ VA L     G D + G+ +            G+    Q++ DA RV +
Sbjct: 43  VLGLSGGIDSTTVAHLTVDELGADALHGLVM-----------PGAVSRDQNMSDAERVAE 91

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + V +  + F   +   F    AAG+        N   +   +++       D +
Sbjct: 92  DLGIEYDVVEI-DPFVTQLTDVFPD--AAGD---EVAVGNARARTRAVINYFVANHGDGV 145

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   R+    G   K         D   D                  P+G++ K  VR
Sbjct: 146 VLGTGNRAEAMTGYYTKY-------GDQAVD----------------CNPIGNLYKMQVR 182

Query: 202 DLAREMGLD 210
            LAR++G+ 
Sbjct: 183 QLARDLGVP 191


>gi|310640301|ref|YP_003945059.1| gmp synthase pp-atpase domain/subunit-like protein [Paenibacillus
           polymyxa SC2]
 gi|309245251|gb|ADO54818.1| GMP synthase PP-ATPase domain/subunit-like protein [Paenibacillus
           polymyxa SC2]
          Length = 512

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 66/204 (32%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D +V+ A+SGGVDSSVVA L+ R     IG  L          RKG       
Sbjct: 210 EIRQQVGDKKVLCALSGGVDSSVVAMLIHRA----IGDQLTCMFIDHGLLRKGE------ 259

Query: 73  VYDARRVCD----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC--VDCNRTVKF 126
              A  V +      ++     D  ERF + +                   V    + KF
Sbjct: 260 ---AESVMETFVGKFDMKVVKIDARERFLSKLAGVDDPEQKRKIIGNEFIYVFEEESAKF 316

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            D          D LA G        + + G       +           +    +    
Sbjct: 317 DDF---------DFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMKF 357

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR +  E GL 
Sbjct: 358 KLIEPLNALFKDEVRKVGEECGLP 381


>gi|261492558|ref|ZP_05989111.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495721|ref|ZP_05992165.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308633|gb|EEY09892.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311717|gb|EEY12867.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 523

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L    +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLS 131
                  +   ++    + E+RF  A           G    P        K        
Sbjct: 277 -------NKFGLNIVRVNAEDRFLEA---------LKGLD-EPEAKRKTIGKVFVDVFDD 319

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +++L     LA G      +        +  + +           +          L  
Sbjct: 320 ESKKLSSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVE 372

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +   +GL 
Sbjct: 373 PLRELFKDEVRKIGLALGLP 392


>gi|167563152|ref|ZP_02356068.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia oklahomensis EO147]
          Length = 539

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|126338491|ref|XP_001372324.1| PREDICTED: similar to guanosine 5-monophosphate synthetase
           [Monodelphis domestica]
          Length = 815

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 65/213 (30%), Gaps = 45/213 (21%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 360 KVLVLLSGGVDSTVCTALLNRALDQDQ---VIAVHIDN--------GFMRKRESQSVEEA 408

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            R    + +   V +    F N              TP   +             R +  
Sbjct: 409 LR---KLGIQVKVVNAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 463

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQ 183
              + +  +     +     +R        G  R  +     L    + +         +
Sbjct: 464 DTFVKIANE-----VIGEMNLRPEEVFLAQGTLRPDLIESASLVASGKAEVIKTHHNDTE 518

Query: 184 QLCDL------RFPLGDMKKESVRDLAREMGLD 210
            +  L        PL D  K+ VR L RE+GL 
Sbjct: 519 LIRKLREEGKVIEPLKDFHKDEVRILGRELGLP 551


>gi|296327752|ref|ZP_06870291.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155099|gb|EFG95877.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 512

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 46/209 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + +V++ +SGGVDSSV AAL+ +  G  +  +                     
Sbjct: 208 QIKERVGNKQVILGLSGGVDSSVAAALINKAIGRQLTCIF-----------VDTGLLRKD 256

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +      V     +++    + EERF             AG T     +  R +   + +
Sbjct: 257 EAKQVMEVYAKNFDMNIKCINAEERFLTK---------LAGVT---DPETKRKIIGKEFV 304

Query: 131 SV----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            V     +++ GA+ LA        I S    G     +         E           
Sbjct: 305 EVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLK 356

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + L     PL ++ K+ VR + RE+G+ 
Sbjct: 357 FELLE----PLRELFKDEVRKVGRELGIP 381


>gi|260662645|ref|ZP_05863539.1| argininosuccinate synthase [Lactobacillus fermentum 28-3-CHN]
 gi|260552726|gb|EEX25725.1| argininosuccinate synthase [Lactobacillus fermentum 28-3-CHN]
          Length = 412

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 31/181 (17%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
           A LK  GYDVI   +   +  +    +     G  V   + V         V D +E F 
Sbjct: 4   AWLKNKGYDVIACCI---DVGEGKDLEAIKEKGLKVGAVKSV---------VIDAKEEFA 51

Query: 98  NAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDD 156
           +   +P   ++A  E   P V   +R +    L+ V ++ GA  +A G            
Sbjct: 52  SEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGATAIAHG------------ 99

Query: 157 GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSD 216
                   +  D  R +          ++ D    +   ++E + D A+E G+ +     
Sbjct: 100 -----CTGKGNDQVRFEVGIHALAPDMKIEDPIREVHWAREEEI-DYAKENGIPVPINKQ 153

Query: 217 S 217
           S
Sbjct: 154 S 154


>gi|184156101|ref|YP_001844441.1| argininosuccinate synthase [Lactobacillus fermentum IFO 3956]
 gi|183227445|dbj|BAG27961.1| argininosuccinate synthase [Lactobacillus fermentum IFO 3956]
          Length = 412

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 31/181 (17%)

Query: 38  ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
           A LK  GYDVI   + +   +     K        +               V D +E F 
Sbjct: 4   AWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGAIKSV------------VIDAKEEFA 51

Query: 98  NAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDD 156
           +   +P   ++A  E   P V   +R +    L+ V ++ GA  +A G            
Sbjct: 52  SEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGATAIAHG------------ 99

Query: 157 GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSD 216
                   +  D  R +          ++ D    +   ++E + D A+E G+ +     
Sbjct: 100 -----CTGKGNDQVRFEVGIHALAPDMKIEDPIREVHWAREEEI-DYAKENGIPVPINKQ 153

Query: 217 S 217
           S
Sbjct: 154 S 154


>gi|163782973|ref|ZP_02177968.1| GMP synthase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881653|gb|EDP75162.1| GMP synthase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 510

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 30/201 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D  V+ A+SGGVDS+V + L+ R     IG  L  +       R G     + 
Sbjct: 208 EIRETVGDAHVIAALSGGVDSTVASVLVHRA----IGDRLHCFFIDHGLLRLGEREEVEK 263

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              A      + +   V D  + F   +                 +  N  +K       
Sbjct: 264 NLRA------LGLPLKVVDASDLFLERLKGVEDPEEKRK------IIGNTFIKV--FERE 309

Query: 133 TRQL-GADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            R + GA+ L  G  Y       G  G  +                +    ++    L  
Sbjct: 310 ARNVEGAEFLLQGTLYPDVVESAGIKGSAKIKTHHN----------VGGLPEKMHLKLLE 359

Query: 191 PLGDMKKESVRDLAREMGLDI 211
           P  ++ K+ VR++ + +G+  
Sbjct: 360 PFRELFKDEVREIGKLLGIPT 380


>gi|14590200|ref|NP_142265.1| hypothetical protein PH0276 [Pyrococcus horikoshii OT3]
 gi|3256665|dbj|BAA29348.1| 206aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 206

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 43/214 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V    SGG DSS+ A +L++ GY+V  VT+                   +   A+   D 
Sbjct: 5   VYHLFSGGKDSSLAAWILRKLGYEVRLVTITF-------------GVLDNWKYAKETADI 51

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +   H V        N  +                    R ++F  L     +     +A
Sbjct: 52  LGFEHEVVRLPRELLNMAVEMCIE----------DGKPGRAIQF--LHEKALE----YVA 95

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           +  Y++       DG RR      +DL + +S       +  +  +R  LG   K  +R+
Sbjct: 96  SRSYVKRIS----DGTRRDDKVPFLDLRKARSLE----DRFNVAYIRPLLGLGYKT-IRE 146

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           LA  +   + ++ +S+ +   ++G Y   ++ + 
Sbjct: 147 LANSIF--VIEERESEKL---EKGDYEAELRYML 175


>gi|19704776|ref|NP_604338.1| GMP synthase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24211750|sp|Q8RDR4|GUAA_FUSNN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|19715106|gb|AAL95637.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 512

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 46/209 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + +V++ +SGGVDSSV AAL+ +  G  +  +                     
Sbjct: 208 QIKERVGNKQVILGLSGGVDSSVAAALINKAIGRQLTCIF-----------VDTGLLRKD 256

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +      V     +++    + EERF             AG T     +  R +   + +
Sbjct: 257 EAKQVMEVYAKNFDMNIKCINAEERFLTK---------LAGVT---DPETKRKIIGKEFV 304

Query: 131 SV----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            V     +++ GA+ LA        I S    G     +         E           
Sbjct: 305 EVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLK 356

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + L     PL ++ K+ VR + RE+G+ 
Sbjct: 357 FELLE----PLRELFKDEVRKVGRELGIP 381


>gi|297571855|ref|YP_003697629.1| GMP synthase, large subunit [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932202|gb|ADH93010.1| GMP synthase, large subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 521

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 66/205 (32%), Gaps = 46/205 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   + A+SGGVDSSV AAL+ R  G  +  V            RKG   A Q + D   
Sbjct: 217 DKHAICALSGGVDSSVAAALVHRAIGDQLTCVF-----VDHGLLRKGE--AEQVIEDY-- 267

Query: 79  VCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAGETPLPCVDCNRTVK 125
             +   +     D  ERF            +  +I   F  S+ A +           +K
Sbjct: 268 -AEARGMKIVAVDESERFLTALAGVRDPEEKRKIIGREFIRSFEAAQ-----------IK 315

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L+    + G +             V   G       +           +        
Sbjct: 316 ---LMEEAPE-GVEFAFLVQGTLYPDVVESGGGDGTANIKSHHN-------VGGLPDDIE 364

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL D+ K+ VR +  E+GL 
Sbjct: 365 FSLVEPLRDLFKDEVRAIGLELGLS 389


>gi|55822848|ref|YP_141289.1| GMP synthase [Streptococcus thermophilus CNRZ1066]
 gi|81559474|sp|Q5M029|GUAA_STRT1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|55738833|gb|AAV62474.1| GMP synthase [Streptococcus thermophilus CNRZ1066]
          Length = 527

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           ++    +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 215 MANFVDMQIAQIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 270

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC--- 117
            K +G             +     ++    D  +RF +                 P    
Sbjct: 271 RKGEGDQVME-------MLGGKFGLNIIRVDASKRFLD----------LLAGVDDPDKKR 313

Query: 118 -VDCNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            +  N  V          +L G D LA G        + + G       +          
Sbjct: 314 KIIGNEFV--HVFDDEASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 362

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 363 -VGGLPEDMQFELIEPLNTLFKDEVRALGTELGMP 396


>gi|71021577|ref|XP_761019.1| hypothetical protein UM04872.1 [Ustilago maydis 521]
 gi|46100939|gb|EAK86172.1| hypothetical protein UM04872.1 [Ustilago maydis 521]
          Length = 426

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S + A L  +GYDVI   +                  +D   AR    
Sbjct: 7   KVLLAYSGGLDTSTILAWLIDEGYDVIA-FMA------------DVGQEEDFEAARSKAL 53

Query: 82  TINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                   + D    F   +I P   + A  E          R V    ++    + G  
Sbjct: 54  KCGAKDFILADLRREFIEELIFPAVQANAIYEDVYLLGTSLARPVIARGMIEAAEKTGCQ 113

Query: 140 VLATG 144
            ++ G
Sbjct: 114 FVSHG 118


>gi|229055099|ref|ZP_04195529.1| GMP synthase, large subunit [Bacillus cereus AH603]
 gi|228721247|gb|EEL72773.1| GMP synthase, large subunit [Bacillus cereus AH603]
          Length = 515

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG         + +         +   +A  V
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKA----IG--------DQLTCIFVDHGLLRK-DEAEGV 266

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLLS 131
             T         + E F   VI       F +     E P     +  N  +  F D   
Sbjct: 267 MKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDD--E 315

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +R  G D LA G        + + G       +           +    +     L  P
Sbjct: 316 ASRLKGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 365

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 366 LNTLFKDEVRVLGSELGIP 384


>gi|254519485|ref|ZP_05131541.1| PP-loop domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913234|gb|EEH98435.1| PP-loop domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 288

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 23/137 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           D +   +  ++ VA+SGG DS ++A     LK+ G       +  +     +   G    
Sbjct: 46  DYNLVEEGDKIAVAISGGKDSLLMAKCFQELKKHG------QM-NFELEFIAMDPGYHPQ 98

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +++      C+ + +  ++++  + F   V+   A  Y       PC  C   ++   L
Sbjct: 99  IKELL--IENCNHLGIPVHIYE-GKIF--EVVDKMARDY-------PCYLC-ARMRRGSL 145

Query: 130 LSVTRQLGADVLATGHY 146
            S  ++LG + LA GH+
Sbjct: 146 YSKAKELGCNKLALGHH 162


>gi|114319762|ref|YP_741445.1| argininosuccinate synthase [Alkalilimnicola ehrlichii MLHE-1]
 gi|119361257|sp|Q0AB32|ASSY_ALHEH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|114226156|gb|ABI55955.1| argininosuccinate synthase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 402

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILQWLRET-YDCEVVTF-----------TADLGQGEELEPARKKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   +   Y+ D  E F    + P           Y  G +    +   R V       +
Sbjct: 53  EAFGIKEIYIDDLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLIAKRQV------EI 106

Query: 133 TRQLGADVLATG 144
            R+ GAD ++ G
Sbjct: 107 ARETGADAVSHG 118


>gi|284006291|emb|CBA71526.1| GMP synthase [glutamine-hydrolyzing] [Arsenophonus nasoniae]
          Length = 525

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV A LL R  G  +  V +                    + +A++
Sbjct: 227 DDQVILALSGGVDSSVTALLLNRAIGKQLTCVFVDN--------------GLLRLNEAQQ 272

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLS-- 131
           V        +++      EERF N          A      P +      + F D+    
Sbjct: 273 VMAMFAGKFDLNIIHVAAEERFLN----------ALAGIDEPELKRKTIGRVFIDVFDEQ 322

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q     LA G      +        +  + +           +     +    L  P
Sbjct: 323 AAKQTQVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPAEMRMGLVEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +   +GL 
Sbjct: 376 LKELFKDEVRKVGLALGLP 394


>gi|313835919|gb|EFS73633.1| GMP synthase protein [Propionibacterium acnes HL037PA2]
 gi|314927235|gb|EFS91066.1| GMP synthase protein [Propionibacterium acnes HL044PA1]
 gi|314970629|gb|EFT14727.1| GMP synthase protein [Propionibacterium acnes HL037PA3]
 gi|328906134|gb|EGG25909.1| GMP synthase, large subunit [Propionibacterium sp. P08]
          Length = 517

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 67/199 (33%), Gaps = 36/199 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            RKG     +D      
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRKGEAEQVKDD----F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +              T +   +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDV------------LTGISDPEAKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLDI 211
             + K+ VR +  E+GL  
Sbjct: 368 RTLFKDEVRAVGLELGLPN 386


>gi|258566628|ref|XP_002584058.1| GMP synthase [Uncinocarpus reesii 1704]
 gi|237905504|gb|EEP79905.1| GMP synthase [Uncinocarpus reesii 1704]
          Length = 526

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 63/203 (31%), Gaps = 38/203 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V+ A+SGGVDS+V + L+K      IG             R   C    D      +  
Sbjct: 209 HVLGAVSGGVDSTVASKLMKEA----IGDRFHAVLVDNGCMRLNECQQVHDT-----LGK 259

Query: 82  TINVSHYVFDYEERFRN---AVIVP----------FASSYAAGETPLPCVDCNRTVKFSD 128
            + ++  V D  ++F +    V  P          F   +      +     +   K   
Sbjct: 260 HLGINLTVIDASKQFLDGLKGVTDPEKKRKFIGGKFIDVFEEEALRIEAKVEHTGAKVKW 319

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L  T             I S  + G     +         +R Q              L
Sbjct: 320 FLQGTL--------YPDVIESLSFKGPSATIKTHHNVGALPKRMQEGAG--------LKL 363

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL ++ K+ VR L RE+G+  
Sbjct: 364 IEPLRELFKDEVRQLGRELGIHN 386


>gi|78778422|ref|YP_396534.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus str. MIT 9312]
 gi|91206817|sp|Q31DE7|GUAA_PROM9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78711921|gb|ABB49098.1| GMP synthase (glutamine-hydrolyzing) [Prochlorococcus marinus str.
           MIT 9312]
          Length = 528

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D    
Sbjct: 224 NKKVLLALSGGVDSSTLAFLLNKA----IGNQLTCMFIDQGFMRKGEPEFLMNFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++     +  ERF +            G T     +  R +            + +
Sbjct: 276 -KKFHIKVEYINARERFISK---------LKGIT---DPEQKRKIIGEEFIRVFEEESNR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG    LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFQYLAQGTLYPDVIESAGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L   +GL 
Sbjct: 381 KLFKDEVRKLGAALGLP 397


>gi|329769467|ref|ZP_08260878.1| GMP synthase [Gemella sanguinis M325]
 gi|328838798|gb|EGF88394.1| GMP synthase [Gemella sanguinis M325]
          Length = 514

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSVVAALL K  G  +I + +     RK           +++     
Sbjct: 215 NQKVLCALSGGVDSSVVAALLDKAIGDQLICMFIDHGLLRKGEAEGVMNTFSKEIE---- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                N++    D +ERF   +                 V       F +     +    
Sbjct: 271 --GGFNMNLIKIDAKERFLGKLKGVSDPEKKRKIIGNEFVYV-----FDE--ECAKLHDV 321

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G        V + G +     +           +    +     L  PL  + K+
Sbjct: 322 PFLAQG---TLYTDVIESGTKNAQTIKSHHN-------VGGLPEDMRFSLIEPLNTLFKD 371

Query: 199 SVRDLAREMGLD 210
            VR L   +GL 
Sbjct: 372 EVRALGEALGLP 383


>gi|297180161|gb|ADI16383.1| argininosuccinate synthase [uncultured bacterium HF130_12L15]
          Length = 408

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T        A   +G      D
Sbjct: 1   MTKWKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT--------ADLGQGV----DD 48

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLL 130
           +  ARR  + +     YV D  E F +  + P   + A  E T L      R +    L+
Sbjct: 49  LEPARRKAEMMGAKEIYVEDVREEFVSDFVFPMFRANAVYEGTYLLGTSIARPLISKHLV 108

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 109 DIARETGADAVAHG 122


>gi|255322577|ref|ZP_05363722.1| ExsB protein [Campylobacter showae RM3277]
 gi|255300485|gb|EET79757.1| ExsB protein [Campylobacter showae RM3277]
          Length = 223

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 27/200 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V  MSGG+DS++ A L KR GY++I +              G     ++     ++ 
Sbjct: 2   KKAVCIMSGGMDSTLCAVLAKRAGYEIIALHF----------DYGQRTMKREKLAFEQIS 51

Query: 81  DTINVSHYVFDYEERF-----RNAVIVPFASSYAAG---ETPLPCVDCNRTVKFSDLLSV 132
           + I  +    + +  F      NA+     +    G   +TP   V     +  S   ++
Sbjct: 52  ERIG-ALKKVNLDASFIASIGGNALTDESLAIRKDGAKPDTPTTYVPFRNGIFISIAAAL 110

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + GA  L  G        V +DG      C    + + +S     T++     +  PL
Sbjct: 111 AEKEGAQALYIG-------IVEEDGSGYPD-CTADFIGKIESAVNAGTSKDFSLRIVTPL 162

Query: 193 GDMKKESVRDLAREMGLDIA 212
            ++ K  +   + E G  + 
Sbjct: 163 VNLSKADIVRKSIEAGSPLE 182


>gi|308234263|ref|ZP_07665000.1| GMP synthase, large subunit [Atopobium vaginae DSM 15829]
 gi|328943814|ref|ZP_08241279.1| GMP synthase [Atopobium vaginae DSM 15829]
 gi|327491783|gb|EGF23557.1| GMP synthase [Atopobium vaginae DSM 15829]
          Length = 538

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 32/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAAL+ R  G  +  V          +         + V +  R
Sbjct: 228 DKKVILALSGGVDSSVVAALVHRAIGKQLTCVF--------VNHGLLRKGEPELVEEVFR 279

Query: 79  VCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +V       EER+      V  P       G              +       ++
Sbjct: 280 --KQFDVDLVHVHAEERYAKLLEGVSEPEEKRKRIGTEF-----------WKVFFEQAQK 326

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +G    LA G      +  G          +   ++   +   F        DL  PL  
Sbjct: 327 IGDVQFLAQGTIYPDIIESGARKTGG----KASTIKSHHNLIPFPEGIHF--DLIEPLDH 380

Query: 195 MKKESVRDLAREMGLD 210
             K+ VR+L   +GL 
Sbjct: 381 FFKDEVRELGLALGLP 396


>gi|227825121|ref|ZP_03989953.1| bifunctional GMP synthase/glutamine amidotransferase
           [Acidaminococcus sp. D21]
 gi|226905620|gb|EEH91538.1| bifunctional GMP synthase/glutamine amidotransferase
           [Acidaminococcus sp. D21]
          Length = 515

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 29/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ AMSGGVDSSV A L+ +  G  +  V     +     K +G         D   
Sbjct: 219 DKNVLCAMSGGVDSSVAAVLVHKAVGKQLTCVF---VDHGLLRKNEGDQVEQVFKRD--- 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D +ERF + +                 +     ++       ++++G 
Sbjct: 273 ----FDMNLIRVDAKERFLSKLKGVSDPEKKRK------IIGEEFIRV--FEEESKKIGH 320

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +    +    DL  PL  + K
Sbjct: 321 VDYLVQGTIYPDVVESG--GTGTSATIKSHHN-------VGGLPEDMDLDLIEPLRALFK 371

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 372 DEVRAVGEELGIP 384


>gi|169835698|ref|ZP_02868886.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [candidate division TM7 single-cell isolate TM7a]
          Length = 516

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 31/196 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++A+SGGVDSSV A L+    G+ +  +     ++    K +G             
Sbjct: 216 DEHVLLALSGGVDSSVAAVLINNAIGHQLTCMF---VDTGLLRKDEGKKVLEYYKEH--- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
               +N+     D ++RF N +                 +  N  +         R+L  
Sbjct: 270 --FDLNIVF--VDAKDRFLNKLKGVDEPEAKRK------IIGNEFI--EVFNEEIRKLKG 317

Query: 137 --GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             GA  LA G        +  D    + +  P    +            Q   L  PL +
Sbjct: 318 QEGAKFLAQG-------TIYPDVIESQSIKGPSHTIKSHHNVGGLPEDLQFE-LLEPLKE 369

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 370 LFKDEVRKVGHELGLP 385


>gi|163839539|ref|YP_001623944.1| argininosuccinate synthase [Renibacterium salmoninarum ATCC 33209]
 gi|187470631|sp|A9WQ90|ASSY_RENSM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|162953015|gb|ABY22530.1| argininosuccinate synthase [Renibacterium salmoninarum ATCC 33209]
          Length = 420

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGS 66
             N    +  P   R+V+A SGG+D+SV    +    G +VI V                
Sbjct: 5   HPNINKYEGVPVTDRIVLAYSGGLDTSVAIGWIGEATGAEVIAV------------AVDV 52

Query: 67  CCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTV 124
              G+ +   R+       V  YV D  + F N   +P   + A  +   P V   +R V
Sbjct: 53  GQGGESLETVRQRALGCGAVEAYVADARDEFANEYCMPTLKANALYQGHYPLVSAISRPV 112

Query: 125 KFSDLLSVTRQLGADVLATG 144
               L+   R+ GA  +A G
Sbjct: 113 IVKHLVKAAREFGATTVAHG 132


>gi|118602883|ref|YP_904098.1| GMP synthase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|259647699|sp|A1AXH0|GUAA_RUTMC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118567822|gb|ABL02627.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 521

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +++ +SGGVDS VVA LL++  G  +  V +            G     +     + 
Sbjct: 223 NANILLGLSGGVDSLVVAVLLQQAVGKQLTCVFVDN----------GLLRFNEGNEVMQI 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
               +++     +  ++F +A+             P       R +     + V     +
Sbjct: 273 FAQNMDMKVIRANAHKKFYDAL--------LNENEPE----AKRKIIGRAFIEVFEEEAK 320

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L     LA G      +   D    +  + +           +          L  PL 
Sbjct: 321 KLDNIQFLAQGTIYPDVIESADAKYGKAKLIKSHHN-------VGGLPNDLQFKLVEPLK 373

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR ++ ++ + 
Sbjct: 374 ELFKDEVRKISVKLSIP 390


>gi|90417011|ref|ZP_01224940.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2207]
 gi|90331358|gb|EAS46602.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2207]
          Length = 405

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+ + Y+   VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVKWLQEE-YNCEVVTF-----------TADIGQGEEVEPARAKAE 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E +    + P           Y  G +    +   R      L+ + 
Sbjct: 54  ALGVKEIYIDDLREEYARDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADTISHG 118


>gi|326792395|ref|YP_004310216.1| GMP synthase, large subunit [Clostridium lentocellum DSM 5427]
 gi|326543159|gb|ADZ85018.1| GMP synthase, large subunit [Clostridium lentocellum DSM 5427]
          Length = 513

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 29/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L K   + +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G       
Sbjct: 209 LRKKVGNGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAVF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             +        +++    + +ERF   +         A       +     ++       
Sbjct: 266 GPEG-----HYDLNFIRVNAQERFYEKLKG--VEEPEAKRK----IIGEEFIRV--FEEE 312

Query: 133 TRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++G  D L  G        V + G  +  + +           +          ++  
Sbjct: 313 AKKIGTVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDYVDFKEIIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR    E+G+ 
Sbjct: 363 PLRLLFKDEVRKAGLELGIP 382


>gi|195111878|ref|XP_002000503.1| GI10264 [Drosophila mojavensis]
 gi|193917097|gb|EDW15964.1| GI10264 [Drosophila mojavensis]
          Length = 417

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S +   L    Y+VI V                    ++   AR+   
Sbjct: 5   KVILAYSGGLDTSCILKWLLEQRYEVICV-------------LADVGQQENFEAARQKAL 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
            I      V D +++F    I P           Y  G +   PC+          L+  
Sbjct: 52  KIGAKEVIVADIKQQFAEQYIWPAIQMGLIYEERYLLGTSLARPCISV-------ALIEA 104

Query: 133 TRQLGADVLATG 144
            R+ GA  LA G
Sbjct: 105 ARRHGAKYLAHG 116


>gi|325918148|ref|ZP_08180300.1| argininosuccinate synthase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535623|gb|EGD07467.1| argininosuccinate synthase [Xanthomonas vesicatoria ATCC 35937]
          Length = 397

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V+A SGG+D+S     L+  GY V  V          +   G     +D  + R     
Sbjct: 6   IVLAFSGGLDTSFCIPYLQERGYAVHTVF---------ADTGGVDAEERDFIEKR--ASE 54

Query: 83  INV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +   SH   D         + PF  +    +   P +  +R +     L    +LG  ++
Sbjct: 55  LGAASHVTVDGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRII 114

Query: 142 ATG 144
           A G
Sbjct: 115 AHG 117


>gi|300173520|ref|YP_003772686.1| GMP synthase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887899|emb|CBL91867.1| GMP synthase [glutamine-hydrolyzing] [Leuconostoc gasicomitatum LMG
           18811]
          Length = 516

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL +     IG         + +         +   +A++V
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLHKA----IG--------DQLTSIFVDHGLLRK-NEAKQV 267

Query: 80  ----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                    ++    D +ERF +       +     E     +  N  ++         +
Sbjct: 268 MEMMGKQFGLNIIKVDAQERFLSK-----LAGIKDPEQK-RKIIGNEFIQV--FNDEATK 319

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L G + LA G      +  G D  +     +           +    +     L  PL  
Sbjct: 320 LDGIEFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDLQFKLIEPLNT 369

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   + + 
Sbjct: 370 LFKDEVRELGEALNMP 385


>gi|283851424|ref|ZP_06368705.1| NAD+ synthetase [Desulfovibrio sp. FW1012B]
 gi|283573162|gb|EFC21141.1| NAD+ synthetase [Desulfovibrio sp. FW1012B]
          Length = 587

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 17/79 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARR 78
           V + +SGG+DSS+ A +     G + V+GV +  +  +                + DA  
Sbjct: 319 VAMGLSGGIDSSLTAVIAADALGPENVMGVAMPTRFSSDDS-------------LEDAEA 365

Query: 79  VCDTINVSHYVFDYEERFR 97
           + + + ++ +V   E  F+
Sbjct: 366 LAEKLGITLHVVAIENIFK 384


>gi|281356482|ref|ZP_06242974.1| asparagine synthase [Victivallis vadensis ATCC BAA-548]
 gi|281317174|gb|EFB01196.1| asparagine synthase [Victivallis vadensis ATCC BAA-548]
          Length = 272

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 79/227 (34%), Gaps = 50/227 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V +A SGGVDS+++ AL        G ++  VT                    D+ +ARR
Sbjct: 19  VCLAFSGGVDSALLLALAAEAQRSGGGEIQAVTF-----------STRLHPQSDIDNARR 67

Query: 79  VCDTINVSHYVFDYEERFRN-AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +     V  +V +  + F +  ++            P  C  C + + FS L      L 
Sbjct: 68  IAGEAGVPLHVIEI-DEFSDPEIVR---------NPPDRCYRCKKHL-FSRLKEFAGALH 116

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             V+  G          D  + R  +    +L               L +L FP     K
Sbjct: 117 LPVVMDG------TNADDLLEYRPGLQALKELG----------ISSPLAELGFP-----K 155

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
             VR+LAR +GL  A +  +   C   +  Y   ++        EG+
Sbjct: 156 REVRELARGLGLSAASRPSTP--CLATRLPYGARLEPELLRRIGEGE 200


>gi|27467291|ref|NP_763928.1| PP family ATPase [Staphylococcus epidermidis ATCC 12228]
 gi|251810028|ref|ZP_04824501.1| PP-loop superfamily ATP-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|27314834|gb|AAO03970.1|AE016745_69 ATP-utilizing enzyme of the PP-loop superfamily [Staphylococcus
           epidermidis ATCC 12228]
 gi|251806372|gb|EES59029.1| PP-loop superfamily ATP-binding protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 278

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 43/216 (19%)

Query: 3   VSEATRLNSLDL--DKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           +   T LN+ ++  D   KDM+ VV+A SGGVDSS    LLK+   D++GV     N  K
Sbjct: 1   METMTELNTKEMKLDALLKDMQSVVIAFSGGVDSS---LLLKKA-IDILGV-----NYVK 51

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               K      ++   A ++  ++ V     +  E     ++     S+           
Sbjct: 52  PVVVKSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTPESW----------Y 101

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            ++ + +S L ++  +LG + +  G        + DD    R   +  D           
Sbjct: 102 YSKRLMYSQLENIKNKLGFNYVLDG-------MIMDDLDDFRPGLKARDD-------FGV 147

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
            +  Q   L        K  VR+L+ +  L + +K 
Sbjct: 148 RSVLQEAKLY-------KSEVRELSHQHDLPVWNKP 176


>gi|134300214|ref|YP_001113710.1| GMP synthase [Desulfotomaculum reducens MI-1]
 gi|134052914|gb|ABO50885.1| GMP synthase (glutamine-hydrolyzing) [Desulfotomaculum reducens
           MI-1]
          Length = 513

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A L+ R  G ++  V     +     K +              
Sbjct: 218 NRQVLCALSGGVDSSVAAVLVHRAVGDNLTCVF---VDHGLLRKNEAEQVVKTFR----- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
             D  N+     D  ERF              G T     +  R +             R
Sbjct: 270 --DQFNIKLVHVDASERFLGK---------LQGVT---DPEQKRKIIGTEFIRVFEEEAR 315

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +LG  D L  G        V + G     + +           +    +    DL  PL 
Sbjct: 316 KLGEIDFLVQG---TLYPDVVESGTATAEVIKSHHN-------VGGLPEDMKFDLVEPLR 365

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 366 WLFKDEVRRLGEELGMP 382


>gi|293363779|ref|ZP_06610520.1| NAD+ synthetase [Mycoplasma alligatoris A21JP2]
 gi|292552645|gb|EFF41414.1| NAD+ synthetase [Mycoplasma alligatoris A21JP2]
          Length = 265

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 50/202 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DS++VAAL K+  G + IGV + + +               D+   +++   
Sbjct: 43  VVGISGGIDSTLVAALAKKALGQNFIGVIMPIND------------MSHDLEHIKKLEKN 90

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADV 140
           + ++    + +E           +   A          N    ++ + L ++ ++     
Sbjct: 91  LEMNFISVNLQET--------NLAINKAINVKNSLAIANIMPRLRMTTLYAIAQE----- 137

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                   + L +G D              +D+ +  + T          P+  + K+ V
Sbjct: 138 -------NNSLVLGTD-------------NKDEFFIGYFTKYGDGGVDILPICHLTKQEV 177

Query: 201 RDLAREMGLDIA--DKSDSQDI 220
           R LA  + +     +K  S  +
Sbjct: 178 RFLASLLNVPNEILEKKPSAGL 199


>gi|119713382|gb|ABL97445.1| GMP synthetase [uncultured marine bacterium EB80_69G07]
          Length = 520

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 27/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSVVA LL +  G  +  +              G     +++   +   
Sbjct: 224 KVICALSGGVDSSVVAQLLNKAIGKKLFCIF----------VNTGLLRKNEEIQVVKTFK 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
             + ++    + E  F   +                 +  N  +K        +++    
Sbjct: 274 KKLKINLIYVNAENEFLRKLNNVSDPEKKRK------IIGNLFIKI--FERYAKRIKNVK 325

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +        +    +           +    ++    L  PL  + K+ 
Sbjct: 326 FLAQGTLYPDLIESKSVTGSQTSKIKSHHN-------VGGLPKKMKLKLVEPLKFLFKDE 378

Query: 200 VRDLAREMGLD 210
           VR L  E+ L 
Sbjct: 379 VRKLGLELKLS 389


>gi|327398290|ref|YP_004339159.1| Argininosuccinate synthase [Hippea maritima DSM 10411]
 gi|327180919|gb|AEA33100.1| Argininosuccinate synthase [Hippea maritima DSM 10411]
          Length = 400

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 45/205 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +VI  T  L  +      K           A +V
Sbjct: 5   KKVVLAYSGGLDTSVIVKWLQDKYGCEVITYTADLGQNEDLEPIK---------EKALKV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +     YV D  E F N  ++      A  E   P      R +    ++ + ++ GA
Sbjct: 56  GAS---KAYVEDVREEFLNEYVMKAFKFGALYEGKYPLATALGRPLITKKMIEIAQKEGA 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPLGDM 195
           D +A G                           DQ  F    +   L     +  P+ D 
Sbjct: 113 DAIAHG---------------------STGKGNDQVRF--DVSAVALKPDIKVIAPVRDW 149

Query: 196 K-K---ESVRDLAREMGLDIADKSD 216
           + K   E + + A++ G+ +    D
Sbjct: 150 ELKSRDEEI-EYAKKHGIPVPVTKD 173


>gi|15920850|ref|NP_376519.1| hypothetical protein ST0630 [Sulfolobus tokodaii str. 7]
 gi|15621634|dbj|BAB65628.1| 318aa long hypothetical veg136 protein [Sulfolobus tokodaii str. 7]
          Length = 318

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 90/251 (35%), Gaps = 41/251 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            ++ VA+SGG DS+ +  L+K    + G+++IG+ + L          G   + +    A
Sbjct: 48  KKIAVAVSGGKDSTTLLHLMKKLSEKKGFEIIGINIDL------GIDMGKQYSSKSTEFA 101

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +  + + V + +   +ER+    I              P       VK   L  +  + 
Sbjct: 102 LKNFEMLGVKYRIVRIKERYGFT-IDDAKHKIKR-----PVCSTCGLVKRYTLTEIAEEE 155

Query: 137 GADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQS--YFLFATTQQQLCDLRFP 191
           GAD + TGH +      +  G      R + R +D+       Y +             P
Sbjct: 156 GADTIVTGHNLNDMAQFIMAGYFNGDVRDLAR-LDIITPPEKGYKVTKVK---------P 205

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDIC---FVQQGKYFDVVKRINAGI--ALEGDIV 246
           L  + ++ +   A   G+         D C   F   G   D ++R    +  A+ G ++
Sbjct: 206 LFLIYEKEILTYALVKGIPFLY-----DSCPHTFRVGGATQDTIRRKLEELEEAIPGYML 260

Query: 247 HLNGQILGRHN 257
            L    + +  
Sbjct: 261 MLVENFINKIQ 271


>gi|159902578|ref|YP_001549922.1| GMP synthase [Prochlorococcus marinus str. MIT 9211]
 gi|159887754|gb|ABX07968.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 548

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSS +A LLKR     IG  L      +   RKG      + +D    
Sbjct: 244 DKKVLLALSGGVDSSTLAFLLKRA----IGDQLTCMFIDQGFMRKGEPEFLMEFFD---- 295

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKFSDLLSVTRQL 136
                ++    +  ERF +            G +       V     ++       + +L
Sbjct: 296 -QKFKINVQYINARERFISK---------LQGISDPEDKRKVIGREFIRV--FEEESERL 343

Query: 137 G-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  D LA G  Y       G +   +      + ++   +  +    +     L  PL  
Sbjct: 344 GPFDYLAQGTLYPDVIESSGTNLDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLRM 401

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + R +GL 
Sbjct: 402 LFKDEVRKVGRALGLP 417


>gi|317056278|ref|YP_004104745.1| GMP synthase large subunit [Ruminococcus albus 7]
 gi|315448547|gb|ADU22111.1| GMP synthase, large subunit [Ruminococcus albus 7]
          Length = 513

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +   D +V++A+SGGVDSSV+AALL +  G  +  +     +     K +G      
Sbjct: 211 DIREKVGDGKVLLALSGGVDSSVLAALLSKAVGRQLTCIF---VDHGFMRKNEGD----- 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +        +++    + +E+F      V  P       GE                
Sbjct: 263 ---EVEAAFKDWDINFVRVNAKEQFMGKLRGVSDPETKRKTIGEEF-----------IRV 308

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
             +  +++G  D LA G        V + G     + +           +          
Sbjct: 309 FEAEAKKIGKVDFLAQG---TIYPDVIESGAGDAAVIKSHHN-------VGGLPDHVDFK 358

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+  R L +E+GL 
Sbjct: 359 EIIEPLRMLFKDETRKLGQELGLS 382


>gi|192358790|ref|YP_001983095.1| argininosuccinate synthase [Cellvibrio japonicus Ueda107]
 gi|190684955|gb|ACE82633.1| argininosuccinate synthase [Cellvibrio japonicus Ueda107]
          Length = 405

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVKWLQEN-YQCEVVTF-----------TADIGQGEEVEPARAKA 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVKQIYIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             ++GAD ++ G
Sbjct: 107 ANEVGADAISHG 118


>gi|297155876|gb|ADI05588.1| argininosuccinate synthase [Streptomyces bingchenggensis BCW-1]
          Length = 399

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   + A      P V   +R      L++  ++ GA
Sbjct: 52  LACGAVEAEVADAKDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKHLVAAAKKHGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TTVAHG 117


>gi|205372406|ref|ZP_03225220.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus coahuilensis m4-4]
          Length = 517

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 65/199 (32%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V+ A+SGGVDSSVVA L+ +     IG         + +         +   +A  V
Sbjct: 222 DKNVLCALSGGVDSSVVAVLIHKA----IG--------DQLTCIFVDHGLLRK-DEAEGV 268

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLLS 131
             T         + E F   VI       F S       P     +  N  +  F D   
Sbjct: 269 MKT---------FSEGFNMNVIKVDAKDRFLSKLEGVSDPEKKRKIIGNEFIYVFDD--E 317

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +  G D LA G        + + G       +           +    +     L  P
Sbjct: 318 AAKLEGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFQLIEP 367

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 368 LNTLFKDEVRKLGSELGIP 386


>gi|218296057|ref|ZP_03496826.1| NAD+ synthetase [Thermus aquaticus Y51MC23]
 gi|218243434|gb|EED09963.1| NAD+ synthetase [Thermus aquaticus Y51MC23]
          Length = 281

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 64/191 (33%), Gaps = 44/191 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VA+SGGVDS+   AL  R  G D V  + L     R +S              A  V
Sbjct: 39  KAIVAVSGGVDSATTLALAVRALGQDRVHALFL---PHRDSS--------PLSREHAYLV 87

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +T  V+    D         I P   +YAA     P +  +R                 
Sbjct: 88  AETFGVALEEVD---------ITPMVEAYAALT---PDLTPHRKGNV------------- 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                   R+R+ V  D  +           + +  F + T          PLGD+ K  
Sbjct: 123 ------MARTRMVVLFDKSQAYQALPLGTGNKTERLFGYYTWHGDDTPPVNPLGDLYKTQ 176

Query: 200 VRDLAREMGLD 210
           V  LA  +G+ 
Sbjct: 177 VWRLAEYLGVP 187


>gi|68171660|ref|ZP_00545023.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658530|ref|YP_506951.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ehrlichia chaffeensis str. Arkansas]
 gi|123493916|sp|Q2GHY2|GUAA_EHRCR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|67998919|gb|EAM85608.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599987|gb|ABD45456.1| GMP synthase [Ehrlichia chaffeensis str. Arkansas]
          Length = 526

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 31/201 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   D +V+ A+SGGVDSSV AAL     Y  IG  L          R       +  
Sbjct: 213 IKKQVGDKKVIAALSGGVDSSVAAALT----YRAIGDQLHCIFIDNGLLRYNEAEKVR-- 266

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              +   D   +   + D    F +    V  P       G+T +               
Sbjct: 267 ---QSFVDQFQMPVTIVDRSSVFLDKLQFVTDPEQKRKIIGKTFIEV-----------FE 312

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++G  + L  G      +  G    +  +  +           +          L 
Sbjct: 313 EEANKIGNVEFLMQGTIYPDVIESGGSVGKESVTIKSHHN-------VGGLPDIMKLQLV 365

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR L +++G+ 
Sbjct: 366 EPLKLLFKDEVRLLGKKLGIS 386


>gi|307297502|ref|ZP_07577308.1| GMP synthase, large subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916762|gb|EFN47144.1| GMP synthase, large subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 501

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV  +SGGVDS+V A L  +  G    G+              G     +D+     VC
Sbjct: 208 KVVGGLSGGVDSTVAAVLTSKAVGDAFTGIF----------VNHGLMRKNEDIE----VC 253

Query: 81  D---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +   ++ +     D  E F   +                 +     +K         +L 
Sbjct: 254 EALRSLGIKLINVDASEEFFRELKGIDNPEEKRK------IIGKTFIKV--FEREANKLN 305

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  L  G      +  G   K    +    +        +     +    L  P+ ++ K
Sbjct: 306 ASFLLQGTIYSDVIESGAASKNSAKIKSHHN--------VGGLPDKMNLKLLEPIRELFK 357

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +G++
Sbjct: 358 DEVRNLGYSLGIE 370


>gi|302335006|ref|YP_003800213.1| GMP synthase (glutamine-hydrolyzing) [Olsenella uli DSM 7084]
 gi|301318846|gb|ADK67333.1| GMP synthase (glutamine-hydrolyzing) [Olsenella uli DSM 7084]
          Length = 529

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 26/191 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGGVDSSVVAAL+ R  G  +  V          +         + V +  R  
Sbjct: 221 KVILALSGGVDSSVVAALVHRAIGDQLTCVF--------VNHGLLRKGEPEMVEEVFR-- 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
           +  NV       EER+         +  +  E     +       +       +++G  +
Sbjct: 271 EQFNVPLVHVHAEERYLR-----LLAGVSDPEQKRRLIGGEF---WKVFFEEAQKIGDVE 322

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           +LA G      +  G          +   ++   +   F   +    DL  PL    K+ 
Sbjct: 323 MLAQGTIYPDIIESGARKTGG----KASTIKSHHNLIPF--PEGVRFDLIEPLDHFFKDE 376

Query: 200 VRDLAREMGLD 210
           VR L   +GL 
Sbjct: 377 VRALGIALGLP 387


>gi|315634475|ref|ZP_07889760.1| GMP synthase [Aggregatibacter segnis ATCC 33393]
 gi|315476702|gb|EFU67449.1| GMP synthase [Aggregatibacter segnis ATCC 33393]
          Length = 519

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L    +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +   ++    D E RF            A+   P         V        +
Sbjct: 273 -------NKFGLNITRVDAESRF--------LGELASVSDPEAKRKIIGKVFVDVFDDES 317

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L     LA G      +        +  + +           +          L  PL
Sbjct: 318 KKLTKVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVEPL 370

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +   +GL 
Sbjct: 371 RELFKDEVRKIGLALGLP 388


>gi|310689987|pdb|3P52|A Chain A, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
           Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
 gi|310689988|pdb|3P52|B Chain B, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
           Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
          Length = 249

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 41/195 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KN +   VV+ +SGG+DS++VA L KR           L  +  A           ++ D
Sbjct: 22  KNSQSQGVVLGLSGGIDSALVATLCKRA----------LKENVFALLXPTQISNKANLED 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A R+C  +N+ + + + +      ++  F    +   T +   +    ++ S L   +  
Sbjct: 72  ALRLCADLNLEYKIIEIQS-----ILDAFIKQ-SENTTLVSLGNFAARIRXSLLYDYS-- 123

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      +++ L +G   K   ++              + T    L     P+G +
Sbjct: 124 ----------ALKNSLVIGTSNKSELLL-------------GYGTIYGDLACAFNPIGSL 160

Query: 196 KKESVRDLAREMGLD 210
            K  +  LA+ + L 
Sbjct: 161 YKSEIYALAKYLNLH 175


>gi|237742539|ref|ZP_04573020.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 4_1_13]
 gi|229430187|gb|EEO40399.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 4_1_13]
          Length = 512

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV AAL+ +  G  +  +                     +      
Sbjct: 215 NKQVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF             AG T     +  R +   + + V     
Sbjct: 264 VYAKNFDMNIKCINAEERFLTK---------LAGVT---DPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA+ LA        I S    G     +         E            + L   
Sbjct: 312 KKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|229015662|ref|ZP_04172648.1| GMP synthase, large subunit [Bacillus cereus AH1273]
 gi|229021854|ref|ZP_04178426.1| GMP synthase, large subunit [Bacillus cereus AH1272]
 gi|228739442|gb|EEL89866.1| GMP synthase, large subunit [Bacillus cereus AH1272]
 gi|228745634|gb|EEL95650.1| GMP synthase, large subunit [Bacillus cereus AH1273]
          Length = 515

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG         + +         +   +A  V
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKA----IG--------DQLTCIFVDHGLLRK-DEAEGV 266

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLSV 132
             T         + E F   VI       F +     E P     +  N  +        
Sbjct: 267 MKT---------FSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYV--FDDE 315

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L G D LA G        + + G       +           +    +     L  P
Sbjct: 316 ASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 365

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 366 LNTLFKDEVRVLGSELGIP 384


>gi|150402525|ref|YP_001329819.1| PP-loop domain-containing protein [Methanococcus maripaludis C7]
 gi|150033555|gb|ABR65668.1| PP-loop domain protein [Methanococcus maripaludis C7]
          Length = 311

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 94/267 (35%), Gaps = 41/267 (15%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK------RK 64
           +L  D    +++V + +SGG DS V+A +L              Y     SK       +
Sbjct: 37  TLGRDVLKNNIKVAMGLSGGKDSLVMAHILNE-----------FYKQIPKSKILAIIVNE 85

Query: 65  GSCCAGQDVYDAR-RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           G      D  DA  + C+   + + +  +++     +      +     T  PC  C   
Sbjct: 86  GIEGYRTDGIDAAVKFCEEHGIEYRIVHFKDYLGTNLDEIVKLAKEKNLTMNPCSFCG-V 144

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           ++   L  V+ +   D LA GH +       DD  +  +M       +  ++   +    
Sbjct: 145 IRRKILNRVSIEEKCDYLAIGHNL-------DDVAQAVMMNYIEGDVKKLAFLGKSLKNP 197

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKS-------DSQDICFVQQGKYFDVVKRIN 236
           +      PL  + +E V  +A  + L                ++C +      D +++ +
Sbjct: 198 KFVKRIKPLEKIPEEEVLLIADLLELKYHKSPCPYSCLSFRSEVCEI-----TDTLEKNH 252

Query: 237 AGIALEGDIVHLNGQILGRHNGIINYT 263
            G   +  IV    ++L  H  +  YT
Sbjct: 253 PGA--KYSIVRGYERLL-EHIELPGYT 276


>gi|134045267|ref|YP_001096753.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132662892|gb|ABO34538.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 311

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-------R 63
           +L  D    +++V + +SGG DS V+A LL              Y     SK        
Sbjct: 37  TLGRDVLKNNIKVAMGLSGGKDSLVMAYLLNE-----------FYKEIPNSKIIAIMVNE 85

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                    +  A + C+  ++ + +  +++     +      +     T  PC  C   
Sbjct: 86  GIEGYRLDGIEAAVKFCEKHDIEYKIVQFKDYLGTNLDEIVKLAKEKNLTMNPCSFCG-V 144

Query: 124 VKFSDLLSVTRQLGADVLATGHYI 147
           ++   L  V+ +   D LA GH +
Sbjct: 145 IRRKILNRVSIEEKCDFLAIGHNL 168


>gi|150391073|ref|YP_001321122.1| PP-loop domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950935|gb|ABR49463.1| PP-loop domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 287

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 27/133 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  ++ +A+SGG DS ++A L +            L+    A+ +          +++ +
Sbjct: 52  EGDKIAIAISGGKDSLLMAKLFQE-----------LHRHGTANFQMEFIVMDPGYHESIK 100

Query: 79  V-----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                 C  + +  ++F+    F   V    A  Y       PC  C   ++   L    
Sbjct: 101 ALLVDNCKHLEIPVHIFEAR-IF--EVAEKMAKEY-------PCFMC-AKMRRGALYQKA 149

Query: 134 RQLGADVLATGHY 146
           ++LG + LA GH+
Sbjct: 150 QELGCNKLALGHH 162


>gi|301607403|ref|XP_002933290.1| PREDICTED: LOW QUALITY PROTEIN: GMP synthase
           [glutamine-hydrolyzing]-like [Xenopus (Silurana)
           tropicalis]
          Length = 702

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNKALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP------------LPCVDCNRTV 124
            +    + +   V +    F N              TP             P  +  R +
Sbjct: 287 LK---KLGIQVKVVNAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTNP--EEKRKI 339

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATT 181
                + +  +     +     +         G  R  +     L    + +        
Sbjct: 340 IGDTFVKIANE-----VIGEMNLNPEEVFLAQGTLRPDLIESASLIASVKAEVIKTHHND 394

Query: 182 QQQLCDL------RFPLGDMKKESVRDLAREMGLD 210
            + +  L        PL D  K+ VR L RE+GL 
Sbjct: 395 TELIRKLREEGKVIEPLKDFHKDEVRVLGRELGLP 429


>gi|289741327|gb|ADD19411.1| GMP synthase [Glossina morsitans morsitans]
          Length = 683

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 47/262 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL+   +   +I V +     RK    K      + + D    
Sbjct: 230 KVLLLVSGGVDSTVCAALLRHALHPSQIIAVHVDNGFMRKDESEK----VEKSLRD---- 281

Query: 80  CDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCN----RTVKFSDLLSV 132
              I +   V      F      +  P    ++  ETP+ C   N    R +     + +
Sbjct: 282 ---IGIDLIVRKEVYTFLKGTTQIKRP--GQFSIVETPMLCQTINPEEKRKIIGDIFVKI 336

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC--- 186
           T+      +     ++    +   G  R  +            ++        + +    
Sbjct: 337 TKD-----IVEDMKLKPEEVLLAQGTLRPDLIESASNLVSPNAETIKTHHNDTELIRELR 391

Query: 187 ---DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
               +  PL D  K+ VR+L  ++G+   +  + Q   F   G    ++      I  + 
Sbjct: 392 NAGRVVEPLSDFHKDEVRELGHDLGIP-PELVERQP--FPGPGLAIRILCAEEPFIEKDY 448

Query: 244 D--------IVHLNGQILGRHN 257
                    IV    ++   H 
Sbjct: 449 SETQVIARVIVDYKNKLEKNHA 470


>gi|262306003|gb|ACY45594.1| gln amidotransferase [Achelia echinata]
          Length = 197

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+V +SGGVDS+V AALL +      VI V +     RK   ++               
Sbjct: 45  KVLVLVSGGVDSTVCAALLHKALQPEQVIAVHIDNGFMRKEESKQVEESL---------- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
              + +   V +    F N
Sbjct: 95  -RKLGLHLLVVNAAHLFYN 112


>gi|153940729|ref|YP_001389467.1| hypothetical protein CLI_0159 [Clostridium botulinum F str.
           Langeland]
 gi|152936625|gb|ABS42123.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. Langeland]
 gi|295317569|gb|ADF97946.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. 230613]
          Length = 268

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 52/231 (22%)

Query: 19  KDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD++ V VA SGGVDS+++  + K            L ++  +           ++ +AR
Sbjct: 15  KDLKSVAVAFSGGVDSTLLLKVAKEA----------LGDNAISITIVSPYIPKWEIREAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            + D I +  Y  +           P      +     P   C  C ++V F+ +  + R
Sbjct: 65  ELVDKIGIKSYFVEV----------PMLEEIRS----NPEDRCYICKKSV-FNKIKDLAR 109

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G   +  G          DD K  R   R +                 L +       
Sbjct: 110 EKGIKYIVDGTNA-------DDTKDYRPGMRALKEL--------DVKSPLLDNSI----- 149

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
             KE +R L++E+ LD  DK      C + +  Y   +K  +     + ++
Sbjct: 150 -NKEEIRVLSKELQLDTWDKP--AYACLLSRIPYNQKIKEKDLDRIEKAEV 197


>gi|134045404|ref|YP_001096890.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132663029|gb|ABO34675.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 296

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 24/141 (17%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTL-QLYNSRKASKRKGS 66
           LN+ + D   KD +++V +SGG DS+V  A+ K  G +V   V     ++   ++     
Sbjct: 28  LNNFE-DLKLKDEKIIVMLSGGKDSAVSLAVAKELGLNVHLCVHFVHKWSWDISTNE--- 83

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                    A+++ D  N+     +  E          A      +    C  C   +K 
Sbjct: 84  ---------AKKLADRFNIPIIFPNVTEE--------LAKKTQGAKGKSICRICKTIMK- 125

Query: 127 SDLLSVTRQLGADVLATGHYI 147
           + ++ + ++  A ++ TG   
Sbjct: 126 ARMIDIAKEENAKIIMTGETA 146


>gi|320531700|ref|ZP_08032639.1| argininosuccinate synthase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136080|gb|EFW28089.1| argininosuccinate synthase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 407

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              RVV+A SGG+D+SV    +    G +V+ V                   G+D+   R
Sbjct: 4   HKDRVVLAYSGGLDTSVAIGWIGEATGREVVAV------------AVDVGQGGEDLEVIR 51

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +       V  YV D  + F N   +P   + A  E   P V   +R V    L+   R+
Sbjct: 52  QRALDCGAVEAYVTDARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAARE 111

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 112 FGAHTVAHG 120


>gi|307692832|ref|ZP_07635069.1| PP-loop domain protein [Ruminococcaceae bacterium D16]
          Length = 256

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 42/142 (29%)

Query: 20  DMRVVVAMSGGVDSSV---VAALLKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + RV V +SGG DS +     A L+      ++V  +TL   +   A  R G      D 
Sbjct: 21  NDRVAVGVSGGKDSLMLLTALAKLREFYPIPFEVEAITL---DMGHADGRPGM-----DF 72

Query: 74  YDARRVCDTINVS---------HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
               R C+ + V          H +FD  +                     PC  C   +
Sbjct: 73  TPVARYCEELGVPYTLIPSEIHHIIFDVRKE------------------KNPCSMC-AKM 113

Query: 125 KFSDLLSVTRQLGADVLATGHY 146
           +   L +  ++ G   +A GH+
Sbjct: 114 RRGALHNAMKERGITKIALGHH 135


>gi|84500752|ref|ZP_00999001.1| argininosuccinate synthase [Oceanicola batsensis HTCC2597]
 gi|84391705|gb|EAQ04037.1| argininosuccinate synthase [Oceanicola batsensis HTCC2597]
          Length = 407

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
             + + +S    Y+ D  E F    + P   + A  E          R +    L+ +  
Sbjct: 51  KAELLGISPENIYIEDIREEFTRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAE 110

Query: 135 QLGADVLATG 144
           + GAD +A G
Sbjct: 111 ETGADAVAHG 120


>gi|282165327|ref|YP_003357712.1| probable thiamine biosynthesis protein ThiI [Methanocella
           paludicola SANAE]
 gi|282157641|dbj|BAI62729.1| probable thiamine biosynthesis protein ThiI [Methanocella
           paludicola SANAE]
          Length = 388

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 45/197 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSC-CAGQDVYD 75
              ++V  +SGG+DS V A L+ R G D+I V      ++ +  ++R        ++   
Sbjct: 177 SQGKMVALISGGIDSPVAAWLMMRRGCDLIPVFFNNGKFSDKDYTERAMDTIKKLKEWAP 236

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R          Y   + +  R      F      G     CV C + + +   + + ++
Sbjct: 237 GRT------FKIYEVPHGDSLRE-----FID---RGNVKYTCVFC-KHMMYRTAIEIAKK 281

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194
            GA  L TG  +        D                               + FP+   
Sbjct: 282 EGAHGLITGSSLGQVASQTSDNLMIEHY-----------------------RIDFPIYHP 318

Query: 195 ---MKKESVRDLAREMG 208
              + K  + ++AR++G
Sbjct: 319 LIGLDKNEIVEIARKIG 335


>gi|313125718|ref|YP_004035988.1| GMP synthase (glutamine-hydrolyzing) [Halogeometricum borinquense
           DSM 11551]
 gi|312292083|gb|ADQ66543.1| GMP synthase (glutamine-hydrolyzing) [Halogeometricum borinquense
           DSM 11551]
          Length = 305

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 38/203 (18%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + ++ +   D   ++A+SGGVDSSV AAL     Y  IG  L          RKG     
Sbjct: 12  TEEIQETVGDANAIIALSGGVDSSVAAALA----YRAIGDQLTPVYVDTGLMRKGETEGI 67

Query: 71  QDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           ++ +D          S  V + ++RF      VI P       GE               
Sbjct: 68  RETFDYME-------SLRVVEAQDRFLGALEGVIDPEEKRKVIGEQF-----------IR 109

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           +     +   A+ L  G     R+    + K    +    D+                  
Sbjct: 110 EFEREAKDTDANYLVQGTIYPDRIESEGNIKSHHNVGGLPDVV-------------DFEG 156

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  P+ D+ K+ VR++ARE+GL+
Sbjct: 157 IVEPVRDLYKDEVREVARELGLE 179


>gi|56420500|ref|YP_147818.1| hypothetical protein GK1965 [Geobacillus kaustophilus HTA426]
 gi|297529858|ref|YP_003671133.1| asparagine synthase [Geobacillus sp. C56-T3]
 gi|56380342|dbj|BAD76250.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|297253110|gb|ADI26556.1| asparagine synthase [Geobacillus sp. C56-T3]
          Length = 274

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 46/196 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+VA SGGVDS+ + A+ K   G  V+ VT                   ++V  A ++ +
Sbjct: 22  VLVAFSGGVDSTFLLAMAKEVLGDQVLAVT-----------AVSETFPTREVQHATKLAE 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I V H      E      +               C  C   + ++ L  + R+      
Sbjct: 71  QIGVKHIKIQINELKNEDFVKNDL---------YRCFHCKNNL-YTHLGELARKY----- 115

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKES 199
           +  + +     + D G+ R  +                   +QL  +R PL   ++ K+ 
Sbjct: 116 SETYTVVDGSNMDDLGEYRPGLQAA----------------RQLG-VRSPLQEAELYKKE 158

Query: 200 VRDLAREMGLDIADKS 215
           +R L++EMGL+  DK 
Sbjct: 159 IRILSKEMGLETWDKP 174


>gi|261403487|ref|YP_003247711.1| GMP synthase, large subunit [Methanocaldococcus vulcanius M7]
 gi|261370480|gb|ACX73229.1| GMP synthase, large subunit [Methanocaldococcus vulcanius M7]
          Length = 310

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 34/199 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D   ++A+SGGVDSSV A L  +  G  +  V +     RK  K +       
Sbjct: 14  EIKEQIGDRNAIIALSGGVDSSVAAVLTHKAIGDKLTAVFVDTGLMRKGEKEEVEKTFK- 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    + + ++  + D ++RF         ++    + P         +       
Sbjct: 73  ---------EKLEMNLIIVDAKDRF--------LNALKGVKDPEEKRKIIGKLFIDVFEE 115

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +  ++ A+VL  G      +    + K    +                     + ++  P
Sbjct: 116 IAEKIKAEVLVQGTIAPDWIETRGNIKSHHNVA---------------LPHGMVLEVVEP 160

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR LARE+GL 
Sbjct: 161 LRELYKDEVRILARELGLP 179


>gi|237736430|ref|ZP_04566911.1| argininosuccinate synthase [Fusobacterium mortiferum ATCC 9817]
 gi|229421472|gb|EEO36519.1| argininosuccinate synthase [Fusobacterium mortiferum ATCC 9817]
          Length = 399

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   LK             YN  +            D  +  +   
Sbjct: 4   KVVLAYSGGLDTSVIVPWLKE-----------NYNDVEVIAVSVDVGQKDDFMEVEKRAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            I     YV D ++   N  I P         + Y  G          R V    L+ + 
Sbjct: 53  AIGASKFYVVDKKDELVNDFIFPMLKSGAKYENEYLLG------TSIARPVIAKALVEIA 106

Query: 134 RQLGADVLATG 144
            + GA+ +A G
Sbjct: 107 LKEGANYIAHG 117


>gi|226227156|ref|YP_002761262.1| GMP synthase [Gemmatimonas aurantiaca T-27]
 gi|259647683|sp|C1A3W7|GUAA_GEMAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226090347|dbj|BAH38792.1| GMP synthase [Gemmatimonas aurantiaca T-27]
          Length = 513

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 34/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+  +SGGVDSSV AAL+ +  G  +  +      L+L+   +              
Sbjct: 214 DRQVICGLSGGVDSSVAAALVHKAIGDQLTCIFVDTGLLRLHEREQVE------------ 261

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              R +   + +       E+RF              G       +  R +     + V 
Sbjct: 262 ---RTMRAHLGIKLITVRAEDRF------------LNGLAGEGDPEKKRKIIGHTFIDVF 306

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A+      ++       D  +       P    +   + +          L  PL 
Sbjct: 307 EDASAEAGKNAEFLVQGTLYPDVIESVSAKGGPSATIKTH-HNVGGLKPDMKFKLIEPLR 365

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR++ RE+GL 
Sbjct: 366 ELFKDEVRNVGRELGLP 382


>gi|116748019|ref|YP_844706.1| NAD+ synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116697083|gb|ABK16271.1| NH(3)-dependent NAD(+) synthetase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 552

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V EA  L   D  +  +  + VV +SGGVDS++   L     G + V+GV +        
Sbjct: 271 VIEALVLGLRDYVRKNRFGKAVVGLSGGVDSALTVCLAVLALGAENVLGVGM-------- 322

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96
               G   A + + DA+ +   + ++       + F
Sbjct: 323 ---PGPFNAPESLEDAKELARRLGIAFETVPIGDLF 355


>gi|291167092|gb|EFE29138.1| GMP synthase [Filifactor alocis ATCC 35896]
          Length = 510

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 32/212 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            ++   +    ++     D +VV+A+SGGVDSSVVAAL+ +  G  +  +     +    
Sbjct: 197 TMANYAKTAIEEIRTKVGDGKVVLALSGGVDSSVVAALISKAIGSQLTCIF---VDHGLM 253

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G           +   ++  +     D E+RF + +                 +  
Sbjct: 254 RKNEGDEVE-------QAFANS-GMKFIRVDAEKRFLDKLAGVSDPEQKRK------IIG 299

Query: 121 NRTVKFSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
              ++        R++GA D LA G        V + G+    + +           +  
Sbjct: 300 EEFIRV--FEEEGRKIGAVDFLAQG---TIYPDVIESGEGDAAVIKSHHN-------VGG 347

Query: 180 TTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                    L  PL ++ K+ VR L  E+GL 
Sbjct: 348 LPAVVDFKGLIEPLRNLFKDEVRQLGLEVGLA 379


>gi|307291609|ref|ZP_07571485.1| GMP synthase protein [Enterococcus faecalis TX0411]
 gi|306497370|gb|EFM66911.1| GMP synthase protein [Enterococcus faecalis TX0411]
          Length = 520

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + ++                V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLVGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|303229933|ref|ZP_07316707.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302515299|gb|EFL57267.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 511

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV AAL+ +  G  +  +     +     K +G         +   
Sbjct: 216 DGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLMRKNEGD--------EVEA 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                 +     D E+RF +           AG   L   +  R               R
Sbjct: 265 AFKDSGMHFIRVDAEKRFLDK---------LAG---LEDPEAKRKAIGEEFIRVFEDEGR 312

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPL 192
           ++G  D LA G        V + G     + +           +           L  PL
Sbjct: 313 KIGSVDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGGLPAVVDFKGLIEPL 362

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR+L  E+GL 
Sbjct: 363 RNLFKDEVRELGSELGLA 380


>gi|289523946|ref|ZP_06440800.1| PP-loop family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502602|gb|EFD23766.1| PP-loop family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 267

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 58/237 (24%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKAS 61
           +S+ T+L    L+   K   +++ +SGG+DSS +A    + +G +V+ VT          
Sbjct: 1   MSKWTKL----LEYINKYDNILILLSGGLDSSFLAYTCSKVEG-NVLAVTF--------- 46

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC- 120
                     +V +A++V +T  + H+V      + + +     S       P  C  C 
Sbjct: 47  --SSPLIPDDEVEEAKKVAETFGLEHHVI-----YSDDL---SVSEIRQNH-PRRCYFCR 95

Query: 121 -NR-TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            NR T+    L     +        G+ +   +   D  + R  +    +          
Sbjct: 96  KNRDTLVMKWLEKFALK--------GYVVMDGVTESDTMEYRPGLEAAKEDG-------- 139

Query: 179 ATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
                    +  PL +  ++KE +R LARE  L   DK  S   C   +  Y+  + 
Sbjct: 140 ---------VHHPLKEAGLRKEDIRKLAREFDLKFWDKPPSP--CLATRFPYYTTLS 185


>gi|257438080|ref|ZP_05613835.1| ExsB family protein [Faecalibacterium prausnitzii A2-165]
 gi|257199411|gb|EEU97695.1| ExsB family protein [Faecalibacterium prausnitzii A2-165]
          Length = 266

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVV----AALLKR-DG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +++V +SGG DS V      A L+R  G  Y+V+ VTL           +       D  
Sbjct: 29  KIMVGVSGGKDS-VALTIGLAQLRRYLGFDYEVVAVTL-----DPQFDHQ-----AVDYS 77

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               +     V + V       R   I P    Y   +   PC  C   ++   L +  +
Sbjct: 78  PLAALFARYGVPYEV-------RRTEIGPIVFEYRQEK--NPCSLC-ARLRRGALHTAAQ 127

Query: 135 QLGADVLATGHYI 147
           +LG + +A GH++
Sbjct: 128 ELGCNKVALGHHL 140


>gi|256855130|ref|ZP_05560491.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis T8]
 gi|256709643|gb|EEU24690.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis T8]
 gi|315028785|gb|EFT40717.1| GMP synthase protein [Enterococcus faecalis TX4000]
          Length = 520

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + ++                V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLVGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|325982651|ref|YP_004295053.1| GMP synthase, large subunit [Nitrosomonas sp. AL212]
 gi|325532170|gb|ADZ26891.1| GMP synthase, large subunit [Nitrosomonas sp. AL212]
          Length = 520

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSV AAL+ R  G  +  V +                      +A++V  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDN--------------GLLRANEAKQVRE 270

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----- 132
                + V     D    F  +             T +   +  R +   + + V     
Sbjct: 271 TFAGNLAVKVIHIDASRDFYRS------------LTGISDPETKRKIIGREFVEVFQRES 318

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +   A  LA G      +       ++    +           +    +     L  PL
Sbjct: 319 AKINDAKWLAQGTIYPDVIESAGGKTKKAHTIKSHHN-------VGGLPETLHLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR+L   +GL 
Sbjct: 372 RELFKDEVRELGLVLGLP 389


>gi|168186048|ref|ZP_02620683.1| GMP synthase [Clostridium botulinum C str. Eklund]
 gi|169296037|gb|EDS78170.1| GMP synthase [Clostridium botulinum C str. Eklund]
          Length = 512

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G  +  V     +     K +G             
Sbjct: 217 DKKVLCALSGGVDSSVAAVLVHKAIGKQLTCVF---VDHGLLRKDEGDQVETIFK----- 268

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +++    +  ERF      V  P       GE                      +
Sbjct: 269 --KQFDMNLIRVNAGERFLGKLKGVSDPEKKRKIIGEEF-----------IRVFEEEANK 315

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  D L  G        V + G       +           +    +     L  PL +
Sbjct: 316 LGQIDFLVQG---TIYPDVVESGTNTSATIKSHHN-------VGGLPEDMQFSLIEPLRE 365

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+G+ 
Sbjct: 366 LFKDEVRAVGEELGIP 381


>gi|161524460|ref|YP_001579472.1| GMP synthase [Burkholderia multivorans ATCC 17616]
 gi|189350785|ref|YP_001946413.1| GMP synthase [Burkholderia multivorans ATCC 17616]
 gi|221198291|ref|ZP_03571337.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2M]
 gi|221208230|ref|ZP_03581234.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2]
 gi|221215487|ref|ZP_03588451.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD1]
 gi|226738401|sp|A9AIP4|GUAA_BURM1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|160341889|gb|ABX14975.1| GMP synthase, large subunit [Burkholderia multivorans ATCC 17616]
 gi|189334807|dbj|BAG43877.1| glutamine-hydrolysing GMP synthase [Burkholderia multivorans ATCC
           17616]
 gi|221164671|gb|EED97153.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD1]
 gi|221171878|gb|EEE04321.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2]
 gi|221182223|gb|EEE14624.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2M]
          Length = 539

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V            R        D+++ R    
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF-----VDHGLLRLNEGKMVLDMFEGRLHAK 279

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            +++     D  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 280 VVHI-----DASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|21227320|ref|NP_633242.1| GMP synthase subunit B [Methanosarcina mazei Go1]
 gi|44887898|sp|Q8PXK0|GUAAB_METMA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|20905674|gb|AAM30914.1| GMP synthase [Methanosarcina mazei Go1]
          Length = 305

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 118/343 (34%), Gaps = 68/343 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K  KD + ++A+SGGVDSSV A L     Y  IG  LQ         RKG     + +
Sbjct: 15  ISKEIKDGKAIIALSGGVDSSVCAELA----YRAIGDRLQPIYIDTGLMRKGETERIRHI 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +         +++  V   ++RF  A   V  P     A GET                 
Sbjct: 71  FS--------HMNLDVVYAKDRFLAALAGVTDPEEKRKAIGETF-----------IRVFE 111

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              R+L AD L  G     R+   + G +       +    D               +  
Sbjct: 112 EEARKLAADYLIQGTIYPDRIES-EGGIKSHHNVGGLPSVMD------------FKKIVE 158

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDIC----FVQQGKYFDVVKRINA---GIALEG 243
           P+ D+ K+ VR++A  + L         +IC    F   G    V+  +      +A E 
Sbjct: 159 PIEDLYKDEVREVAWALQLP-------DEICERMPFPGPGLAVRVLGEVTEEKLEVAREA 211

Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYLDKNSSRVIVGPRESLEVH 301
           + + +  ++L R      +     +G GV      +  +V +        VG R+ +   
Sbjct: 212 NFI-VEEELLERFCPWQTFAAVLGKGTGVKGDVRAYGWIVAIRA------VGSRDGMTAE 264

Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQ 342
            +   E+ W      E  +        ++    +  P P  ++
Sbjct: 265 AL---ELPWEVLKHLESRITSEIPKVARVVYDITPKP-PATIE 303


>gi|303231772|ref|ZP_07318494.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513563|gb|EFL55583.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 511

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV AAL+ +  G  +  +     +     K +G         +   
Sbjct: 216 DGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLMRKNEGD--------EVEA 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                 +     D E+RF            A  E P                   R++G 
Sbjct: 265 AFKDSGMHFIRVDAEKRF--------LDKLAGLEDPEAKRKAIGEEFIRVFEDEGRKIGS 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D LA G        V + G     + +           +           L  PL ++ 
Sbjct: 317 VDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGGLPAVVDFKGLIEPLRNLF 366

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  E+GL 
Sbjct: 367 KDEVRELGSELGLA 380


>gi|300691576|ref|YP_003752571.1| GMP synthetase [Ralstonia solanacearum PSI07]
 gi|299078636|emb|CBJ51294.1| GMP synthetase [Ralstonia solanacearum PSI07]
          Length = 547

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 233 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGQMVLDMFEGRLHARVVH-- 290

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 291 -------------VDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 325

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 326 AKKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 378

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 379 LRDLFKDEVRELGVALGLP 397


>gi|240103250|ref|YP_002959559.1| hypothetical protein TGAM_1193 [Thermococcus gammatolerans EJ3]
 gi|239910804|gb|ACS33695.1| ATPase, putative, PP-loop superfamily [Thermococcus gammatolerans
           EJ3]
          Length = 206

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 27/108 (25%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDV--IGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M+V    SGG DSS+ A +L + GY+V  + VT  L ++                  AR 
Sbjct: 4   MKVHHLYSGGKDSSLAAWILSQLGYEVELVTVTFGLLDN---------------WRYARE 48

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             + +   H V +                  AGE  +     N  ++F
Sbjct: 49  TAERLGFPHRVLELPREILE----------KAGEIAISDGHPNNAIQF 86


>gi|325090353|gb|EGC43663.1| argininosuccinate synthetase [Ajellomyces capsulatus H88]
          Length = 416

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKQKVCLAYSGGLDTSCILAWLIEQGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
           R   +I  +   V D +  F   +              Y  G +        R V    +
Sbjct: 49  RKALSIGALKLVVADLKREFVEELCYRAIQCNAIWEDRYLLGTSLA------RPVIARAM 102

Query: 130 LSVTRQLGADVLATG 144
           +   ++ G   ++ G
Sbjct: 103 MRCAKEEGCIAVSHG 117


>gi|255526695|ref|ZP_05393599.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296185613|ref|ZP_06854022.1| PP-loop family protein [Clostridium carboxidivorans P7]
 gi|255509627|gb|EET85963.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296049741|gb|EFG89166.1| PP-loop family protein [Clostridium carboxidivorans P7]
          Length = 289

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 27/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDAR 77
           +  ++ VA+SGG DS ++A L +            L+  R+ + + +          D +
Sbjct: 52  EGDKIAVAISGGKDSMLMAKLFQE-----------LHRHRQMNFQLEFIAMDPGYHKDIK 100

Query: 78  RV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++    C+ +N+   +F+    F   V    A  Y       PC  C   ++   L +  
Sbjct: 101 KLLIDNCEYLNIPVQIFE-SGIF--EVADKIAQKY-------PCYMC-ARMRRGALYTKA 149

Query: 134 RQLGADVLATGHYIR 148
           ++LG + LA GH+  
Sbjct: 150 KELGCNKLALGHHFN 164


>gi|240278736|gb|EER42242.1| argininosuccinate synthetase [Ajellomyces capsulatus H143]
          Length = 412

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKQKVCLAYSGGLDTSCILAWLIEQGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
           R   +I  +   V D +  F   +              Y  G +        R V    +
Sbjct: 49  RKALSIGALKLVVADLKREFVEELCYRAIQCNAIWEDRYLLGTSLA------RPVIARAM 102

Query: 130 LSVTRQLGADVLATG 144
           +   ++ G   ++ G
Sbjct: 103 MRCAKEEGCIAVSHG 117


>gi|229009759|ref|ZP_04166981.1| GMP synthase, large subunit [Bacillus mycoides DSM 2048]
 gi|229165241|ref|ZP_04293031.1| GMP synthase, large subunit [Bacillus cereus AH621]
 gi|228618236|gb|EEK75271.1| GMP synthase, large subunit [Bacillus cereus AH621]
 gi|228751519|gb|EEM01323.1| GMP synthase, large subunit [Bacillus mycoides DSM 2048]
          Length = 515

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG         + +         +   +A  V
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKA----IG--------DQLTCIFVDHGLLRK-DEAEGV 266

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLSV 132
             T         + E F   VI       F +     E P     +  N  +        
Sbjct: 267 MKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDDE 315

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L G D LA G        + + G       +           +    +     L  P
Sbjct: 316 ASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 365

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 366 LNTLFKDEVRVLGSELGIP 384


>gi|225560336|gb|EEH08618.1| argininosuccinate synthetase [Ajellomyces capsulatus G186AR]
          Length = 416

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKQKVCLAYSGGLDTSCILAWLIEQGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
           R   +I  +   V D +  F   +              Y  G +        R V    +
Sbjct: 49  RKALSIGALKLVVADLKREFVEELCYRAIQCNAIWEDRYLLGTSLA------RPVIARAM 102

Query: 130 LSVTRQLGADVLATG 144
           +   ++ G   ++ G
Sbjct: 103 MRCAKEEGCIAVSHG 117


>gi|20093296|ref|NP_619371.1| GMP synthase subunit B [Methanosarcina acetivorans C2A]
 gi|44887900|sp|Q8THK3|GUAAB_METAC RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|19918653|gb|AAM07851.1| GMP synthase (glutamine-hydrolyzing) [Methanosarcina acetivorans
           C2A]
          Length = 305

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 78/211 (36%), Gaps = 46/211 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +  K+ + ++A+SGGVDSSV A L     Y  IG  LQ         RKG     + +
Sbjct: 15  ISQEIKEGKAIIALSGGVDSSVCAELA----YRAIGDRLQPIYIDTGLMRKGETERIKHI 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +         +++ +V   ++RF  A   V  P     A GET                 
Sbjct: 71  FS--------HMNLHVVYAKDRFLEALAGVTDPEEKRKAVGETF-----------IRVFE 111

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +++ AD L  G     R+   + G +       +    D               +  
Sbjct: 112 DEAKRIAADYLIQGTIYPDRIES-EGGIKSHHNVGGLPSVMD------------FEKIVE 158

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           P+ D+ K+ VR++A  + L        ++IC
Sbjct: 159 PIEDLYKDEVREVAWALQLP-------EEIC 182


>gi|182418849|ref|ZP_02950113.1| ExsB family protein [Clostridium butyricum 5521]
 gi|237668843|ref|ZP_04528827.1| ExsB family protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377302|gb|EDT74864.1| ExsB family protein [Clostridium butyricum 5521]
 gi|237657191|gb|EEP54747.1| ExsB family protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 241

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 30/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS  +  LL   K+     +++I +TL                 G D   
Sbjct: 23  KIAVGLSGGKDSLTLLHLLNSYKKFSPQKFELIAITL--------------NPGGVDNTP 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             ++C  + +  +            I              PC  C   ++   L +  ++
Sbjct: 69  LHKLCKDLEIPFHEI-------QTDIQKIVFEIRKEN--NPCSLC-AKLRRGALHNNAKE 118

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 119 LGCNKVALGHH 129


>gi|89073116|ref|ZP_01159655.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photobacterium sp. SKA34]
 gi|89051069|gb|EAR56526.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photobacterium sp. SKA34]
          Length = 525

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 69/214 (32%), Gaps = 69/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYNSR------ 58
           D  V++ +SGGVDSSVVA L+ R  G  +  V               + ++  +      
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFGDKFGLNIV 286

Query: 59  --KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             +A  R  S  AG D  +A+R    I   H   D  +     +     + + A  T  P
Sbjct: 287 HVQAEDRFLSALAGIDEPEAKR--KKIG--HVFVDVFDEESKKLKN---AKWLAQGTIYP 339

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V  +   K                   H I+S   VG                      
Sbjct: 340 DVIESAASKTGK---------------AHVIKSHHNVG---------------------- 362

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                      L  PL ++ K+ VR +  E+GL 
Sbjct: 363 --GLPDDMEMGLVEPLKELFKDEVRKIGLELGLP 394


>gi|260431981|ref|ZP_05785952.1| argininosuccinate synthase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415809|gb|EEX09068.1| argininosuccinate synthase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 408

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARQ 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
             + + +     Y+ D  E F    + P   + A  E          R +    L+ + +
Sbjct: 51  KAELLGIKPENIYIEDIREEFVRDFVFPMFRANAQYEGLYLLGTSIARPLISKRLIEIAK 110

Query: 135 QLGADVLATG 144
           + GAD +A G
Sbjct: 111 ETGADAVAHG 120


>gi|229131264|ref|ZP_04260168.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST196]
 gi|228652202|gb|EEL08135.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST196]
          Length = 515

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG         + +         +   +A  V
Sbjct: 220 DKKVLCALSGGVDSSVVAVLIHKA----IG--------DQLTCIFVDHGLLRK-DEAEGV 266

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLSV 132
             T         + E F   VI       F +     E P     +  N  +        
Sbjct: 267 MKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDDE 315

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L G D LA G        + + G       +           +    +     L  P
Sbjct: 316 ASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 365

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 366 LNTLFKDEVRVLGSELGIP 384


>gi|254166659|ref|ZP_04873513.1| exsB protein [Aciduliprofundum boonei T469]
 gi|254167513|ref|ZP_04874365.1| exsB protein [Aciduliprofundum boonei T469]
 gi|289596334|ref|YP_003483030.1| exsB protein [Aciduliprofundum boonei T469]
 gi|197623776|gb|EDY36339.1| exsB protein [Aciduliprofundum boonei T469]
 gi|197624269|gb|EDY36830.1| exsB protein [Aciduliprofundum boonei T469]
 gi|289534121|gb|ADD08468.1| exsB protein [Aciduliprofundum boonei T469]
          Length = 237

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ VV +SGG+DSS V A+    GYDV  ++   ++  +   R+        +  A+++ 
Sbjct: 1  MKAVVLLSGGLDSSTVLAIALEMGYDVHALS---FDYGQRHSRE--------LESAKKIA 49

Query: 81 DTINVSHYVF 90
             NV H + 
Sbjct: 50 RYFNVPHKII 59


>gi|33601310|ref|NP_888870.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bordetella bronchiseptica RB50]
 gi|44887946|sp|Q7WK13|GUAA_BORBR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33575746|emb|CAE32823.1| GMP synthase [glutamine-hydrolyzing] [Bordetella bronchiseptica
           RB50]
          Length = 530

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G           +   +
Sbjct: 228 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLDEGKQVM-------QTFAE 277

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            + V     D   +F                T +   +  R +   + + V      +L 
Sbjct: 278 NMGVKIVHVDATSQFMGK------------LTGVADPEAKRKIIGREFVEVFQDEAGKLQ 325

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G      +        +    +           +          L  PL ++ 
Sbjct: 326 GAKWLAQGTIYPDVIESAGAKTGKATSIKSHHN-------VGGLPDTLNLQLLEPLRELF 378

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 379 KDEVRELGVALGLP 392


>gi|317484593|ref|ZP_07943497.1| PP-loop domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924133|gb|EFV45315.1| PP-loop domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 303

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + R++VA+SGG DS  +   L R GYDV G+ + L     +   +G            R
Sbjct: 47  HEDRILVALSGGKDSLSLMLELSRQGYDVTGLHIDLGIPGSSEIVRGV---------IER 97

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C        V +  +     + +P            P       +K         + G 
Sbjct: 98  FCGKHGFKLIVKEMAKE---GLAIPLVKQ----RLKRPICSACGKIKRHYFNKTALEEGF 150

Query: 139 DVLATGHYI 147
             LATGH +
Sbjct: 151 TALATGHNL 159


>gi|315222977|ref|ZP_07864856.1| GMP synthase protein [Streptococcus anginosus F0211]
 gi|315187927|gb|EFU21663.1| GMP synthase protein [Streptococcus anginosus F0211]
          Length = 519

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 207 MDNFIEMQIKRIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF--------VD 258

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                      V D   +     ++    D  +RF + +                 V   
Sbjct: 259 HGLLRKGEADQVMD--SLGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 315

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 316 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     L  PL  + K+ VR L  E+G+ 
Sbjct: 360 EDMQFKLIEPLNTLYKDEVRALGTELGMP 388


>gi|313904496|ref|ZP_07837872.1| NAD+ synthetase [Eubacterium cellulosolvens 6]
 gi|313470638|gb|EFR65964.1| NAD+ synthetase [Eubacterium cellulosolvens 6]
          Length = 263

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 15/75 (20%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          V+ +SGG DSSV AAL     G + VIGV +                   D+ D+R++ +
Sbjct: 30 VIGISGGKDSSVCAALCAEALGKERVIGVLMPN-------------GVQSDISDSRQLVE 76

Query: 82 TINVSHYVFDYEERF 96
          ++ + H   +  + F
Sbjct: 77 SLGIPHVEMNIGKAF 91


>gi|116075784|ref|ZP_01473043.1| hypothetical protein RS9916_40001 [Synechococcus sp. RS9916]
 gi|116067099|gb|EAU72854.1| hypothetical protein RS9916_40001 [Synechococcus sp. RS9916]
          Length = 290

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVVVA SGGVDS++VA + +   G     +T                 A   + +AR+  
Sbjct: 44  RVVVAYSGGVDSALVATIAQEQLGAQATAIT-----------GVSPALAPHLLQEARQQA 92

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQLG-A 138
             + + H                     A  E   P    N T + F+    + R LG  
Sbjct: 93  AWLGLRH------------------QEVATEELKDPHYSSNPTDRCFACKRELHRHLGPL 134

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
              A G  +   +   D    R  +    +                   +  PL D  + 
Sbjct: 135 AAAAEGAQVLDGVNADDLSDHRPGIQAAREAG-----------------VMSPLADLGIT 177

Query: 197 KESVRDLAREMGLDIADKS 215
           K  VR+L++ +GL   DK 
Sbjct: 178 KMQVRELSKALGLPWWDKP 196


>gi|329114013|ref|ZP_08242780.1| GMP synthase [Acetobacter pomorum DM001]
 gi|326696760|gb|EGE48434.1| GMP synthase [Acetobacter pomorum DM001]
          Length = 533

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+  +SGGVDSSV A L+       IG  +T    +       +             
Sbjct: 235 DGKVICGLSGGVDSSVAAVLIHEA----IGDQLTCIFVDHGMLRAGEADDVIKTFRG--- 287

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 N+     D  + F      V  P       G   +                   
Sbjct: 288 ----QFNIQLVHRDASDIFLKALEGVTDPEIKRKTIGRLFVEV-----------FEEEAT 332

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L GA  LA G      +          +  +           +     +    L  PL 
Sbjct: 333 KLGGAQFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPDRMNMKLVEPLR 385

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VRDL RE+ + 
Sbjct: 386 ELFKDEVRDLGRELDIP 402


>gi|299143332|ref|ZP_07036412.1| PP-loop family protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517817|gb|EFI41556.1| PP-loop family protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 282

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 33/144 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGS 66
           + +   +  R+ VA+SGG DS  +A L   LKR G   +++  + +         +++  
Sbjct: 35  EFEMISEGDRIAVAISGGKDSLTLAKLFQELKRHGKMNFELEFIAM-----DPGYRKENR 89

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFR--NAVIVPFASSYAAGETPLPCVDCNRTV 124
                +       C+ + +   + +  + F   N V               PC  C   +
Sbjct: 90  QVLEYN-------CEKMGIPVKIHN-SDVFEVANRVAQN-----------NPCYMC-ARM 129

Query: 125 KFSDLLSVTRQLGADVLATGHYIR 148
           +  +L S  ++LG + LA GH+  
Sbjct: 130 RRGNLYSKAQELGCNKLALGHHFN 153


>gi|121534534|ref|ZP_01666356.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
 gi|121306786|gb|EAX47706.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
          Length = 277

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 44/194 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+  SGG DS    A L    Y V+G          A     +     +  +A      I
Sbjct: 22  VIGFSGGTDS----AFLAAAAYRVLG------ERAVAVTCYSATLPESERMEAAITARQI 71

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H +    E   +  +   A           C  C +  +FS L +     G   +  
Sbjct: 72  GIRHVLLPQNELDSDDFVRNDADR---------CYHCKKG-RFSALAAWAAAHGYHWVLE 121

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G          DD    R   R +                +L  +R PL +  + K  +R
Sbjct: 122 GANA-------DDVGDYRPGLRALS---------------ELAVVRSPLLEVGLTKAEIR 159

Query: 202 DLAREMGLDIADKS 215
           +L+R+ GL   +K 
Sbjct: 160 ELSRQWGLPTWNKP 173


>gi|160878422|ref|YP_001557390.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium phytofermentans ISDg]
 gi|160427088|gb|ABX40651.1| GMP synthase, large subunit [Clostridium phytofermentans ISDg]
          Length = 507

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 39/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 211 DKKVLCALSGGVDSSVAAVMISKAVGKQLTCIF---VDHGLLRKNEGDEVEQIFTT---- 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                +V+    + ++RF +           AG T     +  R +             +
Sbjct: 264 ---QFDVNFVRVNAQQRFYDR---------LAGVT---DPETKRKIIGEEFIRVFEEEAK 308

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPL 192
           ++G  D LA G        V + G  +  + +           +    +     ++  PL
Sbjct: 309 KIGTVDFLAQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKEIVEPL 358

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+G+ 
Sbjct: 359 RLLFKDEVRKAGLELGIP 376


>gi|90579809|ref|ZP_01235617.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio angustum S14]
 gi|90438694|gb|EAS63877.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio angustum S14]
          Length = 525

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 69/214 (32%), Gaps = 69/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYNSR------ 58
           D  V++ +SGGVDSSVVA L+ R  G  +  V               + ++  +      
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFGDKFGLNIV 286

Query: 59  --KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             +A  R  S  AG D  +A+R    I   H   D  +     +     + + A  T  P
Sbjct: 287 HVQAEDRFLSALAGIDEPEAKR--KKIG--HVFVDVFDEESKKLKN---AKWLAQGTIYP 339

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V  +   K                   H I+S   VG                      
Sbjct: 340 DVIESAASKTGK---------------AHVIKSHHNVG---------------------- 362

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                      L  PL ++ K+ VR +  E+GL 
Sbjct: 363 --GLPDDMEMGLVEPLKELFKDEVRKIGLELGLP 394


>gi|34556649|ref|NP_906464.1| NH(3)-dependent NAD(+) synthetase [Wolinella succinogenes DSM 1740]
 gi|46396293|sp|Q7MAJ5|NADE_WOLSU RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|34482363|emb|CAE09364.1| NH(3)-DEPENDENT NAD(+) SYNTHETASE [Wolinella succinogenes]
          Length = 257

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 43/186 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VVV +SGGVDS+VVA L +   G ++  + +             S  + + V  A  +
Sbjct: 27  KKVVVGLSGGVDSAVVARLCQEAIGENLHALLM-----------PSSVSSKESVEHALLL 75

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  N+SH++                       TPL   +     +   L   + +    
Sbjct: 76  CERFNLSHHIQSIAPL------ELAFRELHPEATPLRIGNACARFRMITLYDFSFKENRL 129

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ TG                          + +    + T          P+GD+ K  
Sbjct: 130 VIGTG-------------------------NKSEILLGYGTLYGDTACALNPIGDLYKTE 164

Query: 200 VRDLAR 205
           +  LA+
Sbjct: 165 IFQLAK 170


>gi|313893961|ref|ZP_07827527.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441525|gb|EFR59951.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 511

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV AAL+ +  G  +  +     +     K +G         +   
Sbjct: 216 DGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLMRKNEGD--------EVEA 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                 +     D E+RF            A  E P                   R++G 
Sbjct: 265 AFKDSGMHFIRVDAEKRF--------LDKLAGLEDPEAKRKAIGEEFIRVFEDEGRKIGS 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D LA G        V + G     + +           +           L  PL ++ 
Sbjct: 317 VDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGGLPAVVDFKGLIEPLRNLF 366

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  E+GL 
Sbjct: 367 KDEVRELGSELGLA 380


>gi|238019870|ref|ZP_04600296.1| hypothetical protein VEIDISOL_01746 [Veillonella dispar ATCC 17748]
 gi|237863394|gb|EEP64684.1| hypothetical protein VEIDISOL_01746 [Veillonella dispar ATCC 17748]
          Length = 517

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSV AAL+ +  G  +  +     +     K +G         +   
Sbjct: 222 DGKVLLALSGGVDSSVAAALISKAVGDQLTCIF---VDHGLMRKNEGD--------EVEA 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                 +     D E+RF            A  E P                   R++G 
Sbjct: 271 AFKDSGMHFIRVDAEKRF--------LDKLAGLEDPEAKRKAIGEEFIRVFEDEGRKIGS 322

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D LA G        V + G     + +           +           L  PL ++ 
Sbjct: 323 VDFLAQG---TIYPDVIESGTGEAEVIKSHHN-------VGGLPAVVDFKGLIEPLRNLF 372

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  E+GL 
Sbjct: 373 KDEVRELGSELGLA 386


>gi|254517654|ref|ZP_05129710.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226911403|gb|EEH96604.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 517

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         + + 
Sbjct: 219 NGKVLCALSGGVDSSVAAVLLSKAVGSQLTCVF---VDHGLLRKNEGDEVEEVFGPNGQ- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + +ERF               E     +     ++        +++G 
Sbjct: 275 ----YDLNFIRVNAQERFYEK-----LKGIEEPEQK-RKIIGEEFIRV--FEEEAKKIGT 322

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G        V + G  +  + +           +          ++  PL  + 
Sbjct: 323 VDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDYVDFKEIIEPLRLLF 372

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+G+ 
Sbjct: 373 KDEVRKVGLELGIP 386


>gi|254454165|ref|ZP_05067602.1| argininosuccinate synthase [Octadecabacter antarcticus 238]
 gi|198268571|gb|EDY92841.1| argininosuccinate synthase [Octadecabacter antarcticus 238]
          Length = 410

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 63/222 (28%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSKVTAPKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNR 122
           +  AR   + + +     Y+ D  E F    + P   +       Y  G +    +   R
Sbjct: 48  LEPARVKAELMGIPPENIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR 107

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFA 179
                 L+ +  ++GAD +A G                           DQ  F    +A
Sbjct: 108 ------LVEIAAEVGADAVAHG---------------------ATGKGNDQVRFELAAYA 140

Query: 180 TTQQQLCDLRFP-----LGDMKKESVRDLAREMGLDIADKSD 216
                   +  P     L    K  + + A E  + +A    
Sbjct: 141 LNPDI--KVIAPWREWDLSSRTK--LLEFAEEHQIPVAKDKR 178


>gi|126730086|ref|ZP_01745898.1| argininosuccinate synthase [Sagittula stellata E-37]
 gi|126709466|gb|EBA08520.1| argininosuccinate synthase [Sagittula stellata E-37]
          Length = 412

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 33/147 (22%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSC 67
           +  L ++      +VV+A SGG+D+S++   L+   G +V+  T                
Sbjct: 1   MRILHMNAP---KKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADL 44

Query: 68  CAGQDVYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPC 117
             G+++  AR+  + + +     Y+ D  E F    + P   +       Y  G +    
Sbjct: 45  GQGEELEPARKKAELLGIKPENIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARP 104

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   R      L+ +  + GAD +A G
Sbjct: 105 LISKR------LVEIAEETGADAIAHG 125


>gi|300113670|ref|YP_003760245.1| argininosuccinate synthase [Nitrosococcus watsonii C-113]
 gi|299539607|gb|ADJ27924.1| argininosuccinate synthase [Nitrosococcus watsonii C-113]
          Length = 405

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G++V  AR  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQETYGCEVVTFT-------------ADIGQGEEVAPARAK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + + V   Y+ D  E F    + P           Y  G +    +   R      L  
Sbjct: 52  AEALGVKEIYIEDLREEFCRDYVFPMFRANTLYEGEYLLGTSIARPLIAKR------LAE 105

Query: 132 VTRQLGADVLATG 144
           +    GAD +A G
Sbjct: 106 IASVTGADAVAHG 118


>gi|163938259|ref|YP_001643143.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus weihenstephanensis KBAB4]
 gi|226738389|sp|A9VQG9|GUAA_BACWK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|163860456|gb|ABY41515.1| GMP synthase, large subunit [Bacillus weihenstephanensis KBAB4]
          Length = 512

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG         + +         +   +A  V
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKA----IG--------DQLTCIFVDHGLLRK-DEAEGV 263

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLSV 132
             T         + E F   VI       F +     E P     +  N  +        
Sbjct: 264 MKT---------FSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYV--FDDE 312

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L G D LA G        + + G       +           +    +     L  P
Sbjct: 313 ASKLQGMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMQFKLIEP 362

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 363 LNTLFKDEVRVLGSELGIP 381


>gi|52549269|gb|AAU83118.1| argininosuccinate synthase [uncultured archaeon GZfos26F9]
          Length = 388

 Score = 54.8 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   LLK   GYD VI VT                    D+ +A+ 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVT------------VDVGQPEDDIKEAKE 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +  S+   D +E F    I P   +  + E  +      R +    ++ V R+  A
Sbjct: 50  RGAKLCDSYREIDAKEEFVRDYIFPLIKANGSYEGYVLGTAIARPLIAKHVVEVAREEKA 109

Query: 139 DVLATG 144
           D +A G
Sbjct: 110 DAVAHG 115


>gi|319440352|ref|ZP_07989508.1| argininosuccinate synthase [Corynebacterium variabile DSM 44702]
          Length = 400

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D++V    LK+  G +V+ V++ L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTTVAIPYLKQMTGGEVVAVSIDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   + D ++ F +   +P   +        P V   +R +    L+    + G 
Sbjct: 52  LGAGAVESIIVDAKDEFADNYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAANEHGG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 THVAHG 117


>gi|313889383|ref|ZP_07823031.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122215|gb|EFR45306.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 520

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIEMEIEKIRETVGDKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D ++RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDAKDRFLDLLAGVDDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAETIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +     L  PL  + K+ VR+L   +G+ 
Sbjct: 360 PEDMQFQLIEPLNTLFKDEVRELGIALGMP 389


>gi|256845877|ref|ZP_05551335.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_36A2]
 gi|256719436|gb|EEU32991.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_36A2]
          Length = 509

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 73/209 (34%), Gaps = 46/209 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + +V++ +SGGVDSSV AAL+ +  G  +  +                     
Sbjct: 208 QIKERVGNKQVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKD 256

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +      V     +++    + EERF +           AG T     +  R +   + +
Sbjct: 257 EAKQVMEVYAKNFDMNIKCINAEERFLSK---------LAGVT---DPETKRKIIGKEFV 304

Query: 131 SV----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            V     +++ GA+ LA        I S    G     +         E           
Sbjct: 305 EVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLK 356

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + L     PL ++ K+ VR + RE+G+ 
Sbjct: 357 FELLE----PLRELFKDEVRKVGRELGIP 381


>gi|188585091|ref|YP_001916636.1| GMP synthase (glutamine-hydrolyzing) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|226739645|sp|B2A5V5|GUAA_NATTJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|179349778|gb|ACB84048.1| GMP synthase (glutamine-hydrolyzing) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 510

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +    +  + V  +SGG+DS+V A L+++  G D+  +     N     K +       
Sbjct: 208 QIKTEAQGRKAVCGLSGGIDSTVAALLVQKAIGDDLTCIF---VNHGLLRKNEQDQVREL 264

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
                       +++    D  +RF N            G T     +  R +       
Sbjct: 265 FE-------QEFDINLVYVDASDRFLNK---------LQGVT---DPEQKRKIIGEEFIR 305

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 R++G  D L  G        V + G     + +           +    ++   
Sbjct: 306 VFEEEARKIGDVDFLVQG---TLYTDVVESGTETASVIKSHHN-------VGGLPEKMDL 355

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR +ARE+GL 
Sbjct: 356 SLIEPLNSLFKDEVRQVARELGLH 379


>gi|157813156|gb|ABV81323.1| putative GMP synthetase [Antheraea paukstadtorum]
          Length = 199

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 19/80 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V AALL+          VI + +     RK    K   C        
Sbjct: 46  KVLVLVSGGVDSTVCAALLRTALREDQ---VIALHIDNGFMRKNESAKVERCL------- 95

Query: 77  RRVCDTINVSHYVFDYEERF 96
                 + V  +V +   +F
Sbjct: 96  ----RELGVRLHVVNAAHQF 111


>gi|289423511|ref|ZP_06425312.1| PP-loop family protein [Peptostreptococcus anaerobius 653-L]
 gi|289156013|gb|EFD04677.1| PP-loop family protein [Peptostreptococcus anaerobius 653-L]
          Length = 299

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A + +         ++V+ + +                   +
Sbjct: 61  EGDKIAVAISGGKDSMLMAKMFQELKRHSPVNFEVVYLAM-----DPGYHDSIRKLLEDN 115

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +++    FD  + F   V    AS Y       PC  C   ++   L   
Sbjct: 116 -------CEYLDIPLVTFD-SQIF--EVADRIASDY-------PCYMC-ARMRRGALYGK 157

Query: 133 TRQLGADVLATGHY 146
             +LG + LA GH+
Sbjct: 158 AEELGCNKLALGHH 171


>gi|183982482|ref|YP_001850773.1| argininosuccinate synthase ArgG [Mycobacterium marinum M]
 gi|229889882|sp|B2HR32|ASSY_MYCMM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|183175808|gb|ACC40918.1| argininosuccinate synthase ArgG [Mycobacterium marinum M]
          Length = 398

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L+   R+ G 
Sbjct: 52  LDCGAVEAVVVDARDEFAEGYCLPTILNNALYMDRYPLVSAISRPLIVKHLVEAAREHGG 111

Query: 139 DVLATG 144
            ++A G
Sbjct: 112 GIVAHG 117


>gi|163790890|ref|ZP_02185314.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Carnobacterium sp. AT7]
 gi|159873843|gb|EDP67923.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Carnobacterium sp. AT7]
          Length = 516

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSVV  LL++     IG  +T    +     K +        V    
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLLRKGESEQVMESLVG--- 273

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  ++    D +ERF   +                 V       F D    T+  G
Sbjct: 274 ----KFGLNIIRVDAKERFMAKLAGVSDPETKRKIIGNEFVYV-----FDD--EATKLDG 322

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + LA G      +  G D  +     +           +    +     L  PL  + K
Sbjct: 323 VNFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPENMQFKLIEPLNTLFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR+L  ++G+ 
Sbjct: 373 DEVRELGIQLGMP 385


>gi|157364458|ref|YP_001471225.1| NAD+ synthetase [Thermotoga lettingae TMO]
 gi|157315062|gb|ABV34161.1| NAD+ synthetase [Thermotoga lettingae TMO]
          Length = 281

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 53/260 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS+VVAAL  R  G + V G+   +   R +SK          V DA+ VC+
Sbjct: 25  VVGISGGLDSAVVAALCVRALGAEKVFGL---ILPERDSSKES--------VKDAKTVCE 73

Query: 82  TINVSHYV---------------FDYEERFRNAVIV-PFASSYAA-GETPLPCVDCNRTV 124
            + + + +               F     F  +V        +      P      N+  
Sbjct: 74  NLKIHYEIKPATPMLRKLGIYKLFPPAFLFPKSVQERYVLGKWQKLSNDPFIDDLLNKGN 133

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           K  + L      G     + H IR  +   +  KR       +    +++ FL     + 
Sbjct: 134 K--EFLK-----GLAYYRSKHRIRMCILYFEAEKRNY----AVVGTTNKTEFLTGLYVKW 182

Query: 185 LCDL--RFPLGDMKKESVRDLAREMGLD--IADKSDSQDICFVQQGKY-----FDVVKRI 235
             D     P+  + K  + +LAR + +   I  K  S D+      +Y     +  + RI
Sbjct: 183 GDDSVDIEPIAHLYKTQIFELARHLKIPEKILKKPPSPDLIPGITDEYAFGMSYQELDRI 242

Query: 236 NAGIALEGDIVHLNGQILGR 255
              I  +     L+G+ + +
Sbjct: 243 LQKIEQK---KDLSGEPIEK 259


>gi|108799932|ref|YP_640129.1| argininosuccinate synthase [Mycobacterium sp. MCS]
 gi|119869042|ref|YP_938994.1| argininosuccinate synthase [Mycobacterium sp. KMS]
 gi|119361294|sp|Q1B7R1|ASSY_MYCSS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166220994|sp|A1UH96|ASSY_MYCSK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|108770351|gb|ABG09073.1| Argininosuccinate synthase [Mycobacterium sp. MCS]
 gi|119695131|gb|ABL92204.1| argininosuccinate synthase [Mycobacterium sp. KMS]
          Length = 400

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +            D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEDMDVVRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   S A      P V   +R +    L+   R+    
Sbjct: 61  --------VIDARDEFAEDYCLPAIQSNALYMDRYPLVSALSRPLIVKHLVDAAREHKGG 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|121604901|ref|YP_982230.1| GMP synthase [Polaromonas naphthalenivorans CJ2]
 gi|120593870|gb|ABM37309.1| GMP synthase (glutamine-hydrolyzing) [Polaromonas naphthalenivorans
           CJ2]
          Length = 540

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 66/193 (34%), Gaps = 25/193 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                     D+     V  
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---------VDHGLLRLNEGDMVMEMFVG- 279

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  E+F      V  P A     G   +         +    L    + GA
Sbjct: 280 KLHAKVIRVDAAEQFLGHLAGVSDPEAKRKIIGREFVEVFKA-EAARLKAGLDGAYK-GA 337

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
             LA G      +  G    ++ +  +           +     +QL   L  PL ++ K
Sbjct: 338 KWLAQGTIYPDVIESGGAKSKKAVSIKSHHN-------VGGLP-EQLGLKLLEPLRELFK 389

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 390 DEVRELGVALGLP 402


>gi|222150070|ref|YP_002551027.1| argininosuccinate synthase [Agrobacterium vitis S4]
 gi|221737052|gb|ACM38015.1| argininosuccinate synthase [Agrobacterium vitis S4]
          Length = 409

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 18  PKD-MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD  +VV+A SGG+D+S++   L+   G +V+  T                  G+++  
Sbjct: 4   PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEP 50

Query: 76  ARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVT 133
           AR+  + + +   ++ D  E F    + P   + A  E          R +    L+ + 
Sbjct: 51  ARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 110

Query: 134 RQLGADVLATG 144
           ++ GAD +A G
Sbjct: 111 KKTGADAIAHG 121


>gi|296269998|ref|YP_003652630.1| argininosuccinate synthase [Thermobispora bispora DSM 43833]
 gi|296092785|gb|ADG88737.1| argininosuccinate synthase [Thermobispora bispora DSM 43833]
          Length = 399

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 61/202 (30%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L ++ G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAEKMGAEVIAV------------AVDVGQGGEDMEVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  E F      P   + A      P V   +R +    L    R+   
Sbjct: 52  LDCGAVEAVVVDAREEFARDFCFPALRANALYMDRYPLVSALSRPLIVKHLAEAARKYKG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM-- 195
             +A G                   C       DQ  F            +  P  D   
Sbjct: 112 THVAHG-------------------CTGK--GNDQVRFEAGLAALNPDLKVVAPARDFAW 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++     A E GL I     S
Sbjct: 151 TRDKAIAFAEEKGLPIDVTKKS 172


>gi|296110531|ref|YP_003620912.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832062|gb|ADG39943.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leuconostoc kimchii IMSNU 11154]
          Length = 515

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSVV  LL +     IG  +T    +     K +             
Sbjct: 220 DKKVLLGLSGGVDSSVVGVLLHKA----IGSQLTSIFVDHGLLRKNEAEQVME------- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
            +     ++    D +ERF + +                 +  N  ++         +L 
Sbjct: 269 MMGQQFGLNIIKVDAQERFLSKLAGITDPEQKRK------IIGNEFIQV--FNDEATKLD 320

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G + LA G      +  G D  +     +           +    +     L  PL  + 
Sbjct: 321 GIEFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDLQFKLIEPLNTLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   + + 
Sbjct: 371 KDEVRELGEALDMP 384


>gi|262068274|ref|ZP_06027886.1| NAD+ synthetase [Fusobacterium periodonticum ATCC 33693]
 gi|291378012|gb|EFE85530.1| NAD+ synthetase [Fusobacterium periodonticum ATCC 33693]
          Length = 258

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 50/194 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++ A LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALAAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY-AAGETPLPCVDCNRTV--KFSDLLSVTRQL 136
            + + ++  V +         I     +Y    + P      N+    + S L   + + 
Sbjct: 79  VEDLGINSKVIE---------ITDMIDAYFKNEKDPTSLRMGNKMARERMSILYDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVIGT-------------------------SNKTEIYLGYSTQFGDSACAFNPIGDLY 164

Query: 197 KESVRDLAREMGLD 210
           K +V +L+R + + 
Sbjct: 165 KTNVWELSRYLNIP 178


>gi|242399147|ref|YP_002994571.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
 gi|242265540|gb|ACS90222.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
          Length = 331

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 90/250 (36%), Gaps = 45/250 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  R+ V +SGG DS V+  +L    ++  +++I +T+                  + V
Sbjct: 55  KRGDRIAVGVSGGKDSVVLLHILHKLSQKFPFEIIAITI---------DEGIEGYRPESV 105

Query: 74  YDARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             A+R    + + H ++ ++E   F     V    S+   E    C  C    ++  L++
Sbjct: 106 EIAKRNAKKLGIEHKIYSFKEYIGFSLDETVSIMGSFEKRERVGACSYCGVWRRW--LIN 163

Query: 132 V-TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDL 188
              + L AD LA GH +       DD  +  +M   R       ++   +    + L   
Sbjct: 164 YAAQDLEADKLAVGHNL-------DDEVQMFLMNVMRGDVARLGRTGPYYEVIHEGLVPR 216

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
             PL ++ ++ +   A    +++                  D  +   A  A   +I   
Sbjct: 217 IKPLREVPEKEIVLYAILNNIEV------------------DFSECPYAVEAFRAEIRDW 258

Query: 249 NGQILGRHNG 258
             ++  +H G
Sbjct: 259 INEMEEKHPG 268


>gi|61657937|ref|NP_001013413.1| argininosuccinate synthase [Gallus gallus]
 gi|82197765|sp|Q5ZJ23|ASSY_CHICK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|53133882|emb|CAG32270.1| hypothetical protein RCJMB04_21j5 [Gallus gallus]
          Length = 416

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 30/136 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D  VV+A SGG+D+S +   LK  GY VI   L                  +D   A+
Sbjct: 4   PRDT-VVLAYSGGLDTSCILVWLKEQGYTVIA-FLANI------------GQTEDFDAAQ 49

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSD 128
           +    +     Y+ D    F    I P   + A  E           PC+          
Sbjct: 50  KKALALGAKKVYIQDVCREFVEDFIWPAVRANALYEDRYMLGSALARPCIA-------RH 102

Query: 129 LLSVTRQLGADVLATG 144
           L+ + ++ GA  +A G
Sbjct: 103 LVLIAQEEGARYIAHG 118


>gi|257064612|ref|YP_003144284.1| GMP synthase (glutamine-hydrolyzing) [Slackia heliotrinireducens
           DSM 20476]
 gi|256792265|gb|ACV22935.1| GMP synthase (glutamine-hydrolyzing) [Slackia heliotrinireducens
           DSM 20476]
          Length = 536

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 64/205 (31%), Gaps = 46/205 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLY-----NSRKASKRKGSCCAGQDV 73
           D RV++ +SGGVDSSVVAAL  R  G  +  V +  +     N  +  +   +     D 
Sbjct: 222 DSRVILGLSGGVDSSVVAALCARAIGSRLTCVFV-NHGLLRKNEPEEVEEVFTKQFDVDF 280

Query: 74  YDARRVCDTINVSHYVFDYEE-------RFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                      +   V D EE       +F N            G    P     +   +
Sbjct: 281 VHVHAEERYAGLLAGVVDPEEKRRIIGTQFWNEFFAVAQDIAEDGR---PVQFMAQGTIY 337

Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            D++    R+ G    A+       L    +G                            
Sbjct: 338 PDIIESGARKTGGK--ASTIKSHHNLIPFPEGVHF------------------------- 370

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            DL  PL    K+ VR L   +GL 
Sbjct: 371 -DLIEPLDHFFKDEVRALGTALGLP 394


>gi|168183034|ref|ZP_02617698.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
 gi|182673749|gb|EDT85710.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
          Length = 266

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 51/215 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+++  + K            L ++  +           ++ +A+ + + 
Sbjct: 18  VAVAFSGGVDSTLLLKVAKEA----------LGDNAISITVLSPYIPKWEIKEAKELANH 67

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  +           P            P   C  C + V FS +  + ++ G  
Sbjct: 68  IGIKSYFLEV----------PMLEEIR----FNPEDRCYICKKGV-FSKIKELAKEKGVK 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD K  R   R +                 L +         KE 
Sbjct: 113 YIVDGTNL-------DDTKDYRPGMRALKEL--------DVKSPLLENSI------NKEE 151

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R L++E+G +  +K      C + +  Y   +K 
Sbjct: 152 IRTLSKELGSETWNKP--AYACLLSRIPYNQEIKE 184


>gi|83859053|ref|ZP_00952574.1| argininosuccinate synthase [Oceanicaulis alexandrii HTCC2633]
 gi|83852500|gb|EAP90353.1| argininosuccinate synthase [Oceanicaulis alexandrii HTCC2633]
          Length = 413

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V+A SGG+D+SV+   L+   Y    VT                  G+++  ARR  
Sbjct: 11  KKIVLAYSGGLDTSVILKWLQDA-YQAEVVTF-----------TADLGQGEELEPARRKA 58

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 59  EKAGIKDIYIDDLREEFVRDYVYPMVRANAVYEGQYLLGTSIARPLISKR------LVEI 112

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 113 AHETGADAVAHG 124


>gi|169849981|ref|XP_001831689.1| argininosuccinate synthetase [Coprinopsis cinerea okayama7#130]
 gi|116507327|gb|EAU90222.1| argininosuccinate synthetase [Coprinopsis cinerea okayama7#130]
          Length = 425

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV++A SGG+D+S + A L   GY+V    +                  +D   AR  
Sbjct: 4   KGRVLLAYSGGLDTSCILAWLIEQGYEVYA-FMA------------DVGQEEDFEAARDK 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +     ++ D +  F   +I P   + A  E          R V    ++ V  Q G
Sbjct: 51  ALKVGAKKFFLKDLKREFVTELIYPAVQANAIYENVYLLGTSLARPVIARGMIEVADQEG 110

Query: 138 ADVLATG 144
            D ++ G
Sbjct: 111 CDFVSHG 117


>gi|46199489|ref|YP_005156.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermus thermophilus HB27]
 gi|50400348|sp|Q72IE5|GUAA_THET2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46197115|gb|AAS81529.1| GMP synthase [Thermus thermophilus HB27]
          Length = 503

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 37/203 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +     RV++A+SGGVDSS +A LL + G D + V                     +
Sbjct: 202 EVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVF-----------VDHGLLRLGE 250

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
             +       + V+  V D +ERF                  +   +  R +      + 
Sbjct: 251 REEVEGALRALGVNLLVVDAKERF------------LKALKGVEDPEEKRKIIGREFVAA 298

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              V R+ G    LA G      +     G       +           +    +    +
Sbjct: 299 FSQVARERGPFRFLAQGTLYPDVIESA--GGHGAAKIKSHHN-------VGGLPEDLEFE 349

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  P   + K+ VR+LA  +GL 
Sbjct: 350 LLEPFRLLFKDEVRELALLLGLP 372


>gi|294630984|ref|ZP_06709544.1| GMP synthase [Streptomyces sp. e14]
 gi|292834317|gb|EFF92666.1| GMP synthase [Streptomyces sp. e14]
          Length = 526

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 224 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D E+RF +A+              +   +  R +   + + V  Q  A
Sbjct: 275 VAAT-GVQLKVVDAEKRFLDALKG------------VSDPEEKRKIIGREFIRVFEQAQA 321

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           +++A        L  G                  +S + +    +     L  PL  + K
Sbjct: 322 EIIADEGPAVEFLVQGTLYPDVVESGGGTGAANIKSHHNVGGLPEDLEFKLIEPLRKLFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 382 DEVRMVGQELGLP 394


>gi|169247746|gb|ACA51686.1| argininosuccinate synthase [Streptomyces exfoliatus]
          Length = 397

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F N   +P   + A      P V   +R      L++  ++ GA
Sbjct: 52  LDCGAVEAEVADASDEFANEYCLPAIKANALYMDRYPLVSALSRPAIVKHLVAAAKKHGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TTVAHG 117


>gi|310828641|ref|YP_003960998.1| hypothetical protein ELI_3066 [Eubacterium limosum KIST612]
 gi|308740375|gb|ADO38035.1| hypothetical protein ELI_3066 [Eubacterium limosum KIST612]
          Length = 236

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRDGY------DVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           R+ V +SGG DS   A L  +KR  Y      ++ G+TL +               G D 
Sbjct: 23  RIAVGLSGGKDS--TALLVAMKRFQYFSPVPFELEGITLDM------------GFGGMDF 68

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               ++C  +++ + +       +   I P        +   PC  C   +K   L  + 
Sbjct: 69  EPLVQLCAELDIPYTI-------KKTQIGPIVFEARQEK--NPCALC-ARMKRGALHDLA 118

Query: 134 RQLGADVLATGHYI 147
            + G   +A GH+ 
Sbjct: 119 IERGCRKIALGHHA 132


>gi|257885611|ref|ZP_05665264.1| GMP synthase [Enterococcus faecium 1,231,501]
 gi|257821467|gb|EEV48597.1| GMP synthase [Enterococcus faecium 1,231,501]
          Length = 521

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 205 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 252

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    D  +RF + +                 
Sbjct: 253 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEF 311

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 312 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 356

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 390


>gi|297544017|ref|YP_003676319.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841792|gb|ADH60308.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 300

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +V+V +SGG DS +    +L ++GY+V+ + +      + S R              
Sbjct: 46  KGEKVLVVVSGGKDS-MALWDILVKEGYNVVAMYI-NLGIGEYSNRSQEV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTRQ 135
           +     N+   V D ++ F           Y   +T    PC  C   +K      V   
Sbjct: 96  KFAKENNLPLIVKDIKKEFG-------LDIYKLSKTLRRSPCSVCGS-IKRYLFNKVAYD 147

Query: 136 LGADVLATGHYI 147
            G   +ATGH +
Sbjct: 148 GGFSAVATGHNL 159


>gi|217967925|ref|YP_002353431.1| GMP synthase, large subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337024|gb|ACK42817.1| GMP synthase, large subunit [Dictyoglomus turgidum DSM 6724]
          Length = 507

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 32/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDS+ +A LL+R     IG      +   A           +  +  R 
Sbjct: 210 ENKVLLAVSGGVDSTTLAVLLQRA----IG------DKLTAIFVDHGLLRIGEKEEVSRF 259

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              + V+  V D  ERF      VI P              V  +  V         R+ 
Sbjct: 260 LKDLGVNLVVIDARERFLEKLRGVIDP--EEKRR-------VIGHEFV--GVFKEEARKR 308

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G    LA G      +             +           +    ++   +L  P   +
Sbjct: 309 GPFKFLAQGTLYPDVIESAASNTGMAAKIKTHHN-------VGGLPEELGFELIEPFRYL 361

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +A  +G+ 
Sbjct: 362 FKDEVRKIAEILGIP 376


>gi|295101039|emb|CBK98584.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii L2-6]
          Length = 263

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVV----AALLKR-DG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           RV+V +SGG DS V      A L++  G  ++V+ VTL                   D  
Sbjct: 29  RVLVGVSGGKDS-VALTIGLARLRQYLGFPFEVVAVTL----------DPQFGGKPVDYS 77

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               +    +V + V          +I P    Y   +   PC  C   ++   L +   
Sbjct: 78  ALEALFRRYDVPYEV-------CRTLIGPIVFDYRNEK--NPCSLC-AKMRRGALHTAAE 127

Query: 135 QLGADVLATGHYI 147
           +LG + +A GH++
Sbjct: 128 ELGCNKVALGHHL 140


>gi|291523374|emb|CBK81667.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Coprococcus catus GD/7]
          Length = 513

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 104/323 (32%), Gaps = 53/323 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G       
Sbjct: 209 LREKIGDGKVLCALSGGVDSSVAAVLLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAVF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D         ++    + ++R+ +    V  P A     GE                 
Sbjct: 266 GPDG-----PYELNFIRVNAQQRYYDKLKGVTEPEAKRKIIGEEF-----------IRVF 309

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCD 187
               +++G  D L  G        V + G  +  + +           +          +
Sbjct: 310 EEEAKKIGSVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDVVDFKE 359

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           +  PL  + K+ VR    E+G+              +   Y         GI + G+ V 
Sbjct: 360 IIEPLRMLFKDEVRKAGLELGIP-------------EYLVYRQPFPGPGLGIRIIGE-VT 405

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307
                + +    I      + G+   +G+  +   L  N   V V        + I LR 
Sbjct: 406 EEKVKIVQEADYIYREEIAKAGIDKGLGQ--YFAAL-TNMRSVGVMGDFRTYDYAIALRA 462

Query: 308 INWLGDGLFEDAVVDGFKCFVKI 330
           +N   D +  +A    ++   K+
Sbjct: 463 VN-TSDFMTAEAAQLPWEVLAKV 484


>gi|284043336|ref|YP_003393676.1| GMP synthase, large subunit [Conexibacter woesei DSM 14684]
 gi|283947557|gb|ADB50301.1| GMP synthase, large subunit [Conexibacter woesei DSM 14684]
          Length = 533

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+ A+SGGVDSSV A L+ R  G  +  V     +     K +G             
Sbjct: 234 GGRVICALSGGVDSSVAALLVHRAIGDQLTCVF---VDHGLMRKNEGEQVITAFR----- 285

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             D   V     D EERF N    V  P     A G+  +          F +  +   +
Sbjct: 286 --DHYKVPLVAVDAEERFLNRLRGVTEPEQKRKAIGDEFIRV--------FEEESAKLAE 335

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  L  G      +  G  G       +           +         +L  PL  +
Sbjct: 336 GGARFLVQGTLYSDVIESG--GGTGAATIKSHHN-------VGGLPDDLQFELVEPLRAL 386

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 387 FKDEVRAVGAELGLP 401


>gi|227550696|ref|ZP_03980745.1| GMP synthase (glutamine-hydrolyzing) [Enterococcus faecium TX1330]
 gi|314937585|ref|ZP_07844911.1| GMP synthase protein [Enterococcus faecium TX0133a04]
 gi|314942916|ref|ZP_07849729.1| GMP synthase protein [Enterococcus faecium TX0133C]
 gi|314950864|ref|ZP_07853933.1| GMP synthase protein [Enterococcus faecium TX0133A]
 gi|314991487|ref|ZP_07856964.1| GMP synthase protein [Enterococcus faecium TX0133B]
 gi|314994993|ref|ZP_07860113.1| GMP synthase protein [Enterococcus faecium TX0133a01]
 gi|227180157|gb|EEI61129.1| GMP synthase (glutamine-hydrolyzing) [Enterococcus faecium TX1330]
 gi|313590719|gb|EFR69564.1| GMP synthase protein [Enterococcus faecium TX0133a01]
 gi|313593967|gb|EFR72812.1| GMP synthase protein [Enterococcus faecium TX0133B]
 gi|313596873|gb|EFR75718.1| GMP synthase protein [Enterococcus faecium TX0133A]
 gi|313598388|gb|EFR77233.1| GMP synthase protein [Enterococcus faecium TX0133C]
 gi|313642962|gb|EFS07542.1| GMP synthase protein [Enterococcus faecium TX0133a04]
          Length = 515

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 199 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 246

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    D  +RF + +                 
Sbjct: 247 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEF 305

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 306 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 350

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 351 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 384


>gi|281354848|ref|ZP_06241342.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
 gi|281317728|gb|EFB01748.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
          Length = 479

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 30/201 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+       +VV+ +SGGVDSSVVAAL+ +  G  +  V                     
Sbjct: 175 DIRSQVGGQKVVLGLSGGVDSSVVAALIHKAIGKQLTCVF-----------VNHGLLRKN 223

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +    + +     +++    D  +RF + +                 V     +      
Sbjct: 224 EPEMVQEIFARNFDMNLCYVDASDRFLDKLKGVSDPEQKRK------VIGKEFI--EVFA 275

Query: 131 SVTRQLGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++ A  L  G  Y      +  DG        P  + +   + +    +     L 
Sbjct: 276 EAAAKVDAPFLGQGTIYPDILESIPLDGN-------PNGVIKSH-HNVGGLPENMKFKLV 327

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            P+  + K+ VR++ R +GL 
Sbjct: 328 EPVERLFKDEVREVGRMLGLP 348


>gi|257878703|ref|ZP_05658356.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257888045|ref|ZP_05667698.1| GMP synthase [Enterococcus faecium 1,141,733]
 gi|257893150|ref|ZP_05672803.1| GMP synthase [Enterococcus faecium 1,231,408]
 gi|257896336|ref|ZP_05675989.1| GMP synthase [Enterococcus faecium Com12]
 gi|257899311|ref|ZP_05678964.1| GMP synthase [Enterococcus faecium Com15]
 gi|261206969|ref|ZP_05921658.1| GMP synthase [Enterococcus faecium TC 6]
 gi|289565394|ref|ZP_06445844.1| GMP synthase [Enterococcus faecium D344SRF]
 gi|293379422|ref|ZP_06625566.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecium PC4.1]
 gi|293556575|ref|ZP_06675143.1| GMP synthase [Enterococcus faecium E1039]
 gi|294615416|ref|ZP_06695289.1| GMP synthase [Enterococcus faecium E1636]
 gi|294618343|ref|ZP_06697924.1| GMP synthase [Enterococcus faecium E1679]
 gi|257812931|gb|EEV41689.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257824099|gb|EEV51031.1| GMP synthase [Enterococcus faecium 1,141,733]
 gi|257829529|gb|EEV56136.1| GMP synthase [Enterococcus faecium 1,231,408]
 gi|257832901|gb|EEV59322.1| GMP synthase [Enterococcus faecium Com12]
 gi|257837223|gb|EEV62297.1| GMP synthase [Enterococcus faecium Com15]
 gi|260078597|gb|EEW66299.1| GMP synthase [Enterococcus faecium TC 6]
 gi|289162884|gb|EFD10734.1| GMP synthase [Enterococcus faecium D344SRF]
 gi|291591790|gb|EFF23426.1| GMP synthase [Enterococcus faecium E1636]
 gi|291595437|gb|EFF26749.1| GMP synthase [Enterococcus faecium E1679]
 gi|291601251|gb|EFF31535.1| GMP synthase [Enterococcus faecium E1039]
 gi|292641945|gb|EFF60111.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecium PC4.1]
          Length = 521

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 205 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 252

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    D  +RF + +                 
Sbjct: 253 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEF 311

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 312 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 356

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 390


>gi|260587706|ref|ZP_05853619.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|331084003|ref|ZP_08333110.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541971|gb|EEX22540.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|330402365|gb|EGG81935.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 238

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 20/130 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYD-A 76
           +  ++ + +SGG DS  +   L        G+ ++ Y    +               D  
Sbjct: 22  EGDKIAIGVSGGKDSLTMLYALH-------GL-MRFYPKHFQLEAITVDLGHKDFCADKI 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R+CD++ +   +           I P        +   PC  C +  K   L +  + L
Sbjct: 74  QRLCDSLEIPFTLV-------KTDIAPIIFEERKEQ--NPCSLCAKMRK-GALNNAAKDL 123

Query: 137 GADVLATGHY 146
           G + +A  H+
Sbjct: 124 GCNKVAYAHH 133


>gi|55981521|ref|YP_144818.1| GMP synthase [Thermus thermophilus HB8]
 gi|81363900|sp|Q5SI28|GUAA_THET8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|159795609|pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|159795610|pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|159795611|pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|159795612|pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|55772934|dbj|BAD71375.1| GMP synthase [Thermus thermophilus HB8]
          Length = 503

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 37/203 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +     RV++A+SGGVDSS +A LL + G D + V                     +
Sbjct: 202 EVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVF-----------VDHGLLRLGE 250

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
             +       + V+  V D +ERF                  +   +  R +      + 
Sbjct: 251 REEVEGALRALGVNLLVVDAKERF------------LKALKGVEDPEEKRKIIGREFVAA 298

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              V R+ G    LA G      +     G       +           +    +    +
Sbjct: 299 FSQVARERGPFRFLAQGTLYPDVIESA--GGHGAAKIKSHHN-------VGGLPEDLEFE 349

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  P   + K+ VR+LA  +GL 
Sbjct: 350 LLEPFRLLFKDEVRELALLLGLP 372


>gi|55380003|ref|YP_137853.1| GMP synthase subunit B [Haloarcula marismortui ATCC 43049]
 gi|57012760|sp|Q5UX56|GUAAB_HALMA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|55232728|gb|AAV48147.1| GMP synthase [Haloarcula marismortui ATCC 43049]
          Length = 305

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 42/196 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D   V+ +SGGVDSS  AAL     Y+ IG      +   A           +  + R  
Sbjct: 21  DKHAVIGLSGGVDSSTAAALA----YEAIG------DQLTAVYVDTGLMRKGETDEIRET 70

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            D ++ S  + + ++RF +            GET     +  R +       +  +V R+
Sbjct: 71  FDYMD-SLRIVEAQDRFLDE---------LEGET---DPEEKRHIIGEQFIREFETVARE 117

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGD 194
           + AD L  G     R+      K                  +    ++     +  P+ D
Sbjct: 118 VDADYLVQGTIYPDRIESEGTIKSHHN--------------VGGLPERIDFDGIVEPMRD 163

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++AR + L+
Sbjct: 164 LYKDEVREVARALDLE 179


>gi|322498973|emb|CBZ34045.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 656

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 79/256 (30%), Gaps = 26/256 (10%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNS---RKASKRK 64
           ++     +V+   SGGVDS+V A LL +  G + V+ +      ++L  S    +A    
Sbjct: 217 ERTSDGQKVLCLASGGVDSTVCAVLLLKALGPERVVCIHIDHGFMRLNESVQVVEALNAA 276

Query: 65  GSCCAGQDV-YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           G C        D  +    +        Y       V  P       G T +    C+R 
Sbjct: 277 GVCVHLVQAQEDFAQASTEMTAKGSRAAYTTNKLREVTDPEEKRNIIGNTFMTV--CDRV 334

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +K         QL  + L           +    K   +    +    + +  +      
Sbjct: 335 IK-------ELQLDVENLLLAQGTLRPDLIESGSKYASVNADSIKTHHNDTAVVRLLRDA 387

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
               +  PL D  K+ VR+L   +G+      + Q   F   G     +   +     +G
Sbjct: 388 --GRIIEPLCDYHKDEVRELGARLGIP-RHLVERQP--FPGPGLAIRTLC-TDGTPFRDG 441

Query: 244 DIVHLNGQILGRHNGI 259
           +       +     G 
Sbjct: 442 NFEDTQATVKRVCMGA 457


>gi|300812014|ref|ZP_07092467.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496997|gb|EFK32066.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 517

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 30/211 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            + +  +L+   + +   D  V++ +SGGVDSSV A LL +  G  +  +          
Sbjct: 204 TMDDFIKLSVDSIREEVGDANVILGISGGVDSSVTATLLHKAIGSQLTAIF--------- 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                      D   A  + + + V+    D ++RF + +                 +  
Sbjct: 255 VDHGLLRKNESDEVMA-ALKEGLGVNIVRVDAKDRFMSKLAGVTDPEKKRK------IIG 307

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V+         ++  A  LA G      +  G D        +           +  
Sbjct: 308 NEFVQV--FNDEAEKIKDAKFLAQGTLYTDVIESGTDT---AHTIKSHHN-------VGG 355

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +     L  PL  + K+ VR L  ++GL 
Sbjct: 356 LPEDMQFKLIEPLRQLFKDEVRVLGEKLGLP 386


>gi|293571201|ref|ZP_06682236.1| GMP synthase [Enterococcus faecium E980]
 gi|291608712|gb|EFF37999.1| GMP synthase [Enterococcus faecium E980]
          Length = 521

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 205 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 252

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    D  +RF + +                 
Sbjct: 253 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEF 311

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 312 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 356

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 390


>gi|257876105|ref|ZP_05655758.1| GMP synthase [Enterococcus casseliflavus EC20]
 gi|257810271|gb|EEV39091.1| GMP synthase [Enterococcus casseliflavus EC20]
          Length = 521

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 205 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHG 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 260 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 310

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 311 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 356

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 390


>gi|168213914|ref|ZP_02639539.1| ExsB family protein [Clostridium perfringens CPE str. F4969]
 gi|170714588|gb|EDT26770.1| ExsB family protein [Clostridium perfringens CPE str. F4969]
          Length = 244

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 44/203 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS  +  +LK       + +++I +TL                 G D   
Sbjct: 26  KIAVGLSGGKDSLTLLHILKNYQRFSPEKFELIAITL--------------NPGGVDNSP 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +C  I+V  Y    +   +  V           +   PC  C   ++   L     +
Sbjct: 72  LHELCKNIDVPFYEI--QTDIKEIVFD-------IKKEKNPCSLC-ANLRRGALNDNAEK 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD---QSYFLFATTQQQLCDLRFPL 192
           LG + +A GH+        DD     ++    +   +      F+       +  + F  
Sbjct: 122 LGCNKVALGHH-------KDDALETLMLSISYEGRINCFSPKSFMHKNNLTLIRPMVF-- 172

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
             +++  +R  A E    +    
Sbjct: 173 --IEESQIRKAATEYNFPVIKNP 193


>gi|303243667|ref|ZP_07330008.1| Queuosine synthesis-like protein [Methanothermococcus okinawensis
           IH1]
 gi|302485909|gb|EFL48832.1| Queuosine synthesis-like protein [Methanothermococcus okinawensis
           IH1]
          Length = 292

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDV 73
           + N KD ++V  +SGG DSS    + K  G DV + V                       
Sbjct: 33  ENNLKDKKIVSMLSGGKDSSTALHIAKDLGLDVCLCVHF-----------VHKWSWNLAK 81

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A+++ D +++    +D     +              +    C  C   +K   ++ + 
Sbjct: 82  EQAKKIADKLDIPIIFYDITGDLKKR--------TKGAKGGSICRICKDIMK-DKIIEIA 132

Query: 134 RQLGADVLATGHYI 147
           +  GA+++ TG   
Sbjct: 133 KDEGAEIILTGDTA 146


>gi|295395145|ref|ZP_06805353.1| GMP synthase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971907|gb|EFG47774.1| GMP synthase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 526

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDS+V AAL+ +  G  +  V +         ++       QD      
Sbjct: 221 DKQVICALSGGVDSAVAAALVHKAVGDQLTCVFV----DHGLLRKDERKQVEQDY----- 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V     D  ++F N           AG T     +  R +   + + V     A
Sbjct: 272 VAST-GVRLVTVDAADQFVNE---------LAGVT---DPETKRKIIGREFIRVFETAAA 318

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           D++A        +     G     +            +   + +    +     L  PL 
Sbjct: 319 DLVAQSRNDAEPIEFLVQGTLYPDVVESGGGSGTANIKSH-HNVGGLPEDLQFKLVEPLR 377

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR++ RE+GL 
Sbjct: 378 ALFKDEVREIGRELGLP 394


>gi|291300554|ref|YP_003511832.1| argininosuccinate synthase [Stackebrandtia nassauensis DSM 44728]
 gi|290569774|gb|ADD42739.1| argininosuccinate synthase [Stackebrandtia nassauensis DSM 44728]
          Length = 402

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L    G +VI V             +      Q   D   V 
Sbjct: 4   RVVLAFSGGLDTSVAIPYLAEQTGGEVIAV-----AIDVGQDGEDLNVIRQRALDCGAV- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  E F      P   + A      P +   +R +    L+    + GA 
Sbjct: 58  -----EAEVVDAREEFAADYCFPAIQANALYMDRYPLLSGLSRPLIVKHLVDAAIKHGAT 112

Query: 140 VLATG 144
           +++ G
Sbjct: 113 IVSHG 117


>gi|257866501|ref|ZP_05646154.1| GMP synthase [Enterococcus casseliflavus EC30]
 gi|257872983|ref|ZP_05652636.1| GMP synthase [Enterococcus casseliflavus EC10]
 gi|257800459|gb|EEV29487.1| GMP synthase [Enterococcus casseliflavus EC30]
 gi|257807147|gb|EEV35969.1| GMP synthase [Enterococcus casseliflavus EC10]
          Length = 521

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 205 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHG 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 260 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 310

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 311 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 356

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 390


>gi|126460328|ref|YP_001056606.1| GMP synthase [Pyrobaculum calidifontis JCM 11548]
 gi|126250049|gb|ABO09140.1| GMP synthase (glutamine-hydrolyzing) [Pyrobaculum calidifontis JCM
           11548]
          Length = 505

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 32/191 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ +SGGVDS+V A L+    Y  +G         KA           +      +  +
Sbjct: 213 VIIGVSGGVDSTVTAVLV----YKAVG------ERAKAVFIDHGLFREGEPERVVELLKS 262

Query: 83  INVSHYVFDYEERFRNAV--IVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           I +  Y  D  ERF + +  +          GET    V      KF           A 
Sbjct: 263 IGLEVYYVDARERFLSKLEGVSDCEEKRRIVGETFAE-VFTEALAKFP---------NAK 312

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +  G          +  D  +   + +         +L  PL +  K+ 
Sbjct: 313 YLAQGTLYPDVVESGA--------VKGADRIKSH-HNVGGLPPWFKLELIEPLREFYKDE 363

Query: 200 VRDLAREMGLD 210
           VR LA+ +GL 
Sbjct: 364 VRRLAKALGLP 374


>gi|332074768|gb|EGI85242.1| GMP synthase [Streptococcus pneumoniae GA17545]
          Length = 520

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 26/208 (12%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           +     +    + +   D RV++ +SGGVDSSVV  LL++     IGV L          
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKA----IGVQLICIFVDHGLL 263

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           RKG      D+     +     ++    D  +RF + +                 V    
Sbjct: 264 RKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV-- 316

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
              F D    ++      LA G      +  G D  +     +           +    +
Sbjct: 317 ---FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPE 361

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +L  PL  + K+ VR L  E+G+ 
Sbjct: 362 DMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8]
 gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8]
          Length = 507

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 70/230 (30%), Gaps = 39/230 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L   PKD  V+ A+SGG DS V  ALL K  G   +   L                +  D
Sbjct: 11  LRLAPKDPLVL-AVSGGGDS-VALALLVKEAGRQAVVAHL---------DHGLRPESPLD 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               R + + +            F   V      + A GE         R V+++ L  V
Sbjct: 60  QAFVRALAERLGFPF--------FTERV-EVARIAQARGENLEAVA---REVRYAFLHRV 107

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            R++GA  + T H +  +            + +                +++   +  PL
Sbjct: 108 AREVGARAILTAHTLDDQAE-----TVLLQLLQGTARATG--------IREREGIVVRPL 154

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
               +E +R   R  G    +   +QD        +  +           
Sbjct: 155 LAHTREELRAYLRARGEAWREDPTNQDPAL--DRNFLRLFVFPLLEERFP 202


>gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
 gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
          Length = 507

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 70/230 (30%), Gaps = 39/230 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L   PKD  V+ A+SGG DS V  ALL K  G   +   L                +  D
Sbjct: 11  LRLAPKDPLVL-AVSGGGDS-VALALLVKEAGRQAVVAHL---------DHGLRPESPLD 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               R + + +            F   V      + A GE         R V+++ L  V
Sbjct: 60  QAFVRALAERLGFPF--------FTERV-EVARIAQARGENLEAVA---REVRYAFLHRV 107

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            R++GA  + T H +  +            + +                +++   +  PL
Sbjct: 108 AREVGARAILTAHTLDDQAE-----TVLLQLLQGTARATG--------IREREGIVVRPL 154

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
               +E +R   R  G    +   +QD        +  +           
Sbjct: 155 LAHTREELRAYLRARGEAWREDPTNQDPAL--DRNFLRLFVFPLLEERFP 202


>gi|223042934|ref|ZP_03612982.1| conserved hypothetical protein [Staphylococcus capitis SK14]
 gi|222443788|gb|EEE49885.1| conserved hypothetical protein [Staphylococcus capitis SK14]
          Length = 275

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 41/205 (20%)

Query: 12  LDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + L+   K+M+ VV+A SGGVDSS+V   LK+   DV+G       + K    K      
Sbjct: 9   MKLNHLLKEMQSVVIAYSGGVDSSLV---LKKA-IDVLG-----VKNVKPVVVKSELFRN 59

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           ++   A  +  ++ V     +  E   + ++     S+            ++ + +  L 
Sbjct: 60  EEFNQAIELGRSLGVEVLETEMAELEDDNIVKNTPESW----------YFSKRLLYGKLN 109

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +  +   + +  G        + DD K  R   +  D            +  Q   L  
Sbjct: 110 EIKEEFNFNYILDG-------MIMDDLKDFRPGLKARDE-------FGVRSVLQEAHLY- 154

Query: 191 PLGDMKKESVRDLAREMGLDIADKS 215
                 K  +R+L+++  L + +K 
Sbjct: 155 ------KSEIRELSKQHDLPVWNKP 173


>gi|254442187|ref|ZP_05055663.1| GMP synthase, C-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198256495|gb|EDY80803.1| GMP synthase, C-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 513

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 33/213 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +++  R +   + +   + RV++ +SGGVDSSV AAL+ +  G  +  V +     R   
Sbjct: 198 MADLARESIEKIRETVGEDRVLLGLSGGVDSSVAAALIHKAIGRQLTCVFVDNGLLRLNE 257

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVD 119
           +        +      RV                        F ++      P     + 
Sbjct: 258 RELVVDLYKRHFNMDVRVARAG------------------SKFLAALKGVSEPERKRKII 299

Query: 120 CNRTVKFSDLLSVTRQLG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
               VK        +++G A  LA G  Y      +  DG        P    +   + +
Sbjct: 300 GKTFVKV--FQESLKRIGDAKFLAQGTLYPDVIESISIDGN-------PAATIKSH-HNV 349

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +     L  PL ++ K+ VR L  E+GL 
Sbjct: 350 GGLPKNMKFKLLEPLRELFKDEVRALGAELGLP 382


>gi|189218261|ref|YP_001938903.1| GMP synthase [Methylacidiphilum infernorum V4]
 gi|189185119|gb|ACD82304.1| GMP synthase [Methylacidiphilum infernorum V4]
          Length = 520

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 70/193 (36%), Gaps = 29/193 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           ++ +   + +V++ +SGGVDSSV AAL+ +     +G  +     ++    + +      
Sbjct: 215 EIRRKVGNEKVILGISGGVDSSVTAALVHKA----VGKRLYPLFVDTGLLRQNEAETIT- 269

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                 + +  ++ +  ++FD  ++F + +                 +  +  ++     
Sbjct: 270 ------KLLQQSLGLKIHLFDASQQFLDRLKNVADPERKRK------IIGSLFIRV--FE 315

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              +  G    LA G      +     G++   + +           +    ++   +L 
Sbjct: 316 KAAQSFGEVKFLAQGTLYPDIIESAQSGRKGACLIKSHHN-------VGGLPKKIPFELI 368

Query: 190 FPLGDMKKESVRD 202
            PL  + K+ VR 
Sbjct: 369 EPLRFLFKDEVRK 381


>gi|188997411|ref|YP_001931662.1| PP-loop domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932478|gb|ACD67108.1| PP-loop domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 304

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+ +++VA+SGG DS +     L + GY+V G  +        S++            A 
Sbjct: 47  KNSKILVAVSGGKDS-LSLWNALAKLGYNVDGFYI-NLGIGDYSQKSK--------ELAL 96

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  + I  + ++ + ++                 +    C  C   +K   +    ++LG
Sbjct: 97  KFAEKIGKTLHIVELKDEIA------TIPEMKTYDNRPACSICGT-IKRYFMNKKAKELG 149

Query: 138 ADVLATGHYI 147
            D++ATGH +
Sbjct: 150 YDIIATGHNL 159


>gi|154488644|ref|ZP_02029493.1| hypothetical protein BIFADO_01951 [Bifidobacterium adolescentis
           L2-32]
 gi|212715749|ref|ZP_03323877.1| hypothetical protein BIFCAT_00649 [Bifidobacterium catenulatum DSM
           16992]
 gi|225352198|ref|ZP_03743221.1| hypothetical protein BIFPSEUDO_03814 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|154082781|gb|EDN81826.1| hypothetical protein BIFADO_01951 [Bifidobacterium adolescentis
           L2-32]
 gi|212661116|gb|EEB21691.1| hypothetical protein BIFCAT_00649 [Bifidobacterium catenulatum DSM
           16992]
 gi|225157445|gb|EEG70784.1| hypothetical protein BIFPSEUDO_03814 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 418

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV  + LK   G DV+ V+L +    ++ +            +A    
Sbjct: 12  RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGAVEA---- 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F N   +    + A  E   P V   +R +    L+    Q GAD
Sbjct: 68  -------YVVDARDEFANEYCMKALKANALYEGVYPLVSAISRPLISKHLVRAAHQFGAD 120

Query: 140 VLATG 144
            ++ G
Sbjct: 121 TISHG 125


>gi|314932831|ref|ZP_07840200.1| ATP-utilizing enzyme of the PP-loop family protein [Staphylococcus
           caprae C87]
 gi|313654512|gb|EFS18265.1| ATP-utilizing enzyme of the PP-loop family protein [Staphylococcus
           caprae C87]
          Length = 275

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 41/205 (20%)

Query: 12  LDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + L+   K+M+ VV+A SGGVDSS+V   LK+   DV+GV      + K    K      
Sbjct: 9   MKLNHLLKEMQSVVIAYSGGVDSSLV---LKKA-IDVLGV-----KNVKPVVVKSELFRN 59

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           ++ Y A  +  ++ V     +  E   + ++     S+            ++ + +  L 
Sbjct: 60  EEFYQAIELVRSLGVEVLETEMAELEDDNIVKNTPESW----------YFSKRLLYGKLN 109

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +  +   + +  G        + DD +  R   +  D            +  Q   L  
Sbjct: 110 EIKEEFNFNYILDG-------MIMDDLEDFRPGLKARDE-------FGVRSVLQEAHLY- 154

Query: 191 PLGDMKKESVRDLAREMGLDIADKS 215
                 K  +R+L+++  L + +K 
Sbjct: 155 ------KSEIRELSKQHDLPVWNKP 173


>gi|325182303|emb|CCA16757.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 525

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 36/195 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+ A+SGGVDSSV A LL+R  G     V +            G     + ++  +R+ 
Sbjct: 230 HVIGAVSGGVDSSVAAVLLQRALGDRFHAVLIDN----------GLLREDEAIHVVKRLK 279

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + ++ +  +  +RF  A+           +T       N  +          +LG   
Sbjct: 280 DKMKINLHCINASDRFLTALKGVTDPE-KKRKT-----IGNLFI--EIFQEEAIRLGNIQ 331

Query: 141 L-----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      I S  Y G     +         E+                L  PL ++
Sbjct: 332 FLLQGTLYPDVIESVSYKGPSATIKTHHNVGGLPEKMH------------LKLIEPLREL 379

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L   +G+D
Sbjct: 380 FKDEVRELGVALGID 394


>gi|194289765|ref|YP_002005672.1| gmp synthase [Cupriavidus taiwanensis LMG 19424]
 gi|226738433|sp|B3R290|GUAA_CUPTR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|193223600|emb|CAQ69607.1| GMP synthetase (glutamine aminotransferase) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 539

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +     + +G       V        
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRQDEGKLVMEMFVG------- 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           + AG T     +  R +   + + V     R+L 
Sbjct: 275 RLHAKVVHVDASEQFL---------GHLAGVT---DPEQKRKIIGREFVEVFQAEARKLT 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L  E+GL 
Sbjct: 376 KDEVRELGVELGLP 389


>gi|153955725|ref|YP_001396490.1| hypothetical protein CKL_3111 [Clostridium kluyveri DSM 555]
 gi|219856094|ref|YP_002473216.1| hypothetical protein CKR_2751 [Clostridium kluyveri NBRC 12016]
 gi|146348583|gb|EDK35119.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569818|dbj|BAH07802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 299

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 21/138 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + +   +  RV VA+SGG DS ++A L +     + V       ++    +   G   + 
Sbjct: 46  EFNLVEEGDRVGVAVSGGKDSMLMAKLFQELKRHWKV------NFHIEFIAMDPGYHESN 99

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +++      C+ +N+  +VF+    F   V+   A  Y       PC  C   ++   L 
Sbjct: 100 RNLL--IENCNYLNIPLHVFE-SHIF--NVVDNIAKDY-------PCYIC-AKMRRGALY 146

Query: 131 SVTRQLGADVLATGHYIR 148
           S  +QLG   LA GH+  
Sbjct: 147 SKAQQLGCSKLALGHHFN 164


>gi|73668711|ref|YP_304726.1| GMP synthase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|121697126|sp|Q46D96|GUAAB_METBF RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|72395873|gb|AAZ70146.1| GMP synthase (glutamine-hydrolyzing) [Methanosarcina barkeri str.
           Fusaro]
          Length = 305

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 64/199 (32%), Gaps = 37/199 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K  KD R ++A+SGGVDSSV A L  R     IG  LQ         RKG        
Sbjct: 15  ISKEIKDGRAIIALSGGVDSSVCAELAHRA----IGGRLQPIYIDTGLMRKGETER---- 66

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVI--VPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                      + H    +     + V     F ++      P                 
Sbjct: 67  -----------IKHI---FSHMNLDIVYAKDRFLAALKGITDPEEKRKAIGETFIRVFEE 112

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R+L AD L  G     R+   + G +       +    D               +  P
Sbjct: 113 EARKLEADYLIQGTIYPDRIES-EGGIKSHHNVGGLPSVMD------------FKKIVEP 159

Query: 192 LGDMKKESVRDLAREMGLD 210
           + D+ K+ VR++A  + L 
Sbjct: 160 IEDLYKDEVREVAWALKLP 178


>gi|11498485|ref|NP_069713.1| hypothetical protein AF0879 [Archaeoglobus fulgidus DSM 4304]
 gi|3915121|sp|O29382|THII_ARCFU RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|2649723|gb|AAB90361.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 374

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 47/228 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           +VV  +SGG+DS V A +  + G +V+ V           +   S    + +   A ++ 
Sbjct: 167 KVVALISGGIDSPVAAFMAMKRGCEVVAVHFFN-------QTMHSPKVREKIRMLAEKLA 219

Query: 81  DTIN-VSHYVFDYEE-RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +    +  Y+  ++E +F   +I                V     ++ ++L+    + G 
Sbjct: 220 EYQGKIKLYMVPFKEVQF--EIINRVPPKLRM------VVYRRSMMRMANLI--AEKEGC 269

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +        D                  Y            +  PL  M KE
Sbjct: 270 KAVVTGDSLSQVASQTLDNINVI-------------YSASKL------AVLPPLIGMDKE 310

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            +  +A+ +        ++ +I  +        +   +     + + V
Sbjct: 311 EIVAIAKRI--------ETYEISILPYEDCCSFMVAQHPETRAKIEDV 350


>gi|321314361|ref|YP_004206648.1| GMP synthase [Bacillus subtilis BSn5]
 gi|320020635|gb|ADV95621.1| GMP synthase [Bacillus subtilis BSn5]
          Length = 513

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F         P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAQDRFLDKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGTELGIP 382


>gi|198420645|ref|XP_002127818.1| PREDICTED: similar to arginosuccinate synthetase [Ciona
           intestinalis]
          Length = 407

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   L   GY VIG                +    +D   AR     
Sbjct: 7   VVLAYSGGLDTSCILVWLIEQGYKVIGF-------------LVNVGQNEDFEVAREKGLR 53

Query: 83  INVS-HYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSVT 133
           +     Y+ D ++ F    I P   + A  E           PC+          L+ V 
Sbjct: 54  LGAEKMYIEDCKKEFVEEFIWPAVQANAKYEDRYLMGTALARPCIA-------RKLIEVA 106

Query: 134 RQLGADVLATG 144
           ++  A  ++ G
Sbjct: 107 KKENATYISHG 117


>gi|118431661|ref|NP_148287.2| NH(3)-dependent NAD(+) synthetase [Aeropyrum pernix K1]
 gi|152031642|sp|Q9YAI1|NADE_AERPE RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|116062984|dbj|BAA80968.2| NH(3)-dependent NAD(+) synthetase [Aeropyrum pernix K1]
          Length = 286

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 65/204 (31%), Gaps = 68/204 (33%)

Query: 24  VVAMSGGVDSSVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ +SGGVDSS+  AL       G  V  + +                  +DV DA R+ 
Sbjct: 41  VLGVSGGVDSSLALALAVDAVGSG-RVTALIM----------PDREVTPERDVEDALRLV 89

Query: 81  DTINVSHYVFD--------------YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            +  V H V D              +E+  ++ V               P  +    ++ 
Sbjct: 90  RSFGVEHAVIDISPIVMVYISALPIFEDEEKDRV---------------PVGNLRARIRA 134

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           + L     +LG  VL TG   RS   +G                       + T      
Sbjct: 135 NILYYYANKLGKLVLGTGD--RSEYLIG-----------------------YFTKYGDAA 169

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
               PL  + K  VR LA  +G+ 
Sbjct: 170 CDVAPLTVLYKSQVRRLAELIGVP 193


>gi|320528555|ref|ZP_08029712.1| GMP synthase protein [Solobacterium moorei F0204]
 gi|320131141|gb|EFW23714.1| GMP synthase protein [Solobacterium moorei F0204]
          Length = 513

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 33/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDSSVVAALL +     IG  L          RKG          A  V
Sbjct: 215 NDKVLLALSGGVDSSVVAALLDKA----IGKNLYCMFIDHGLLRKGE---------AEGV 261

Query: 80  ----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                  ++++    D  ERF N       +  +  E     +       F D ++   Q
Sbjct: 262 METFTRNMSLNLIKIDARERFLNK-----LAGVSDPEQKRKIIGSEFIYTFRDEVAKLLQ 316

Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                 LA G        + + G +     +           +    +     L  PL  
Sbjct: 317 GTDIKWLAQG---TLYTDIIESGTKTAQTIKSHHN-------VGGLPEDMNFKLIEPLNK 366

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 367 LFKDEVRALGTELGLP 382


>gi|319939115|ref|ZP_08013479.1| GMP synthase [Streptococcus anginosus 1_2_62CV]
 gi|319812165|gb|EFW08431.1| GMP synthase [Streptococcus anginosus 1_2_62CV]
          Length = 519

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 207 MDNFIEMQIKRIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF--------VD 258

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                      V D   +     ++    D  +RF + +                 V   
Sbjct: 259 HGLLRKGEADQVMD--SLGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 315

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 316 ----FDD--EASKLKDVRFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     L  PL  + K+ VR L  E+G+ 
Sbjct: 360 EDMQFKLIEPLNTLYKDEVRALGTELGMP 388


>gi|256840787|ref|ZP_05546295.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298376612|ref|ZP_06986567.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19]
 gi|256738059|gb|EEU51385.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298266490|gb|EFI08148.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19]
          Length = 438

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 24/130 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D  V+V +SGG DS  VA L  L R GY  I +    +   + S R        D   A
Sbjct: 17  EDRPVLVGLSGGADS--VALLGVLVRLGYPCIALHCNFHLRGEESDR--------DEAFA 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +++ V  +  D+        I      + + E         R ++++    +  +L
Sbjct: 67  CEFAESLEVPFHKIDF------DTISYAGERHLSIE------MAARELRYAWFEEMRERL 114

Query: 137 GADVLATGHY 146
           G    A  H+
Sbjct: 115 GGQATAVAHH 124


>gi|150008036|ref|YP_001302779.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503]
 gi|226695544|sp|A6LBU3|TILS_PARD8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|149936460|gb|ABR43157.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503]
          Length = 438

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 24/130 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D  V+V +SGG DS  VA L  L R GY  I +    +   + S R        D   A
Sbjct: 17  EDRPVLVGLSGGADS--VALLGVLVRLGYPCIALHCNFHLRGEESDR--------DEAFA 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +++ V  +  D+        I      + + E         R ++++    +  +L
Sbjct: 67  CEFAESLEVPFHKIDF------DTISYAGERHLSIE------MAARELRYAWFEEMRERL 114

Query: 137 GADVLATGHY 146
           G    A  H+
Sbjct: 115 GGQATAVAHH 124


>gi|146086376|ref|XP_001465531.1| GMP synthase [Leishmania infantum JPCM5]
 gi|321399442|emb|CBZ08655.1| putative GMP synthase [Leishmania infantum JPCM5]
          Length = 656

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 79/256 (30%), Gaps = 26/256 (10%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNS---RKASKRK 64
           ++     +V+   SGGVDS+V A LL +  G + V+ +      ++L  S    +A    
Sbjct: 217 ERTSDGQKVLCLASGGVDSTVCAVLLLKALGPERVVCIHIDHGFMRLNESVQVVEALNAA 276

Query: 65  GSCCAGQDV-YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           G C        D  +    +        Y       V  P       G T +    C+R 
Sbjct: 277 GVCVHLVQAQEDFAQASTEMTAKGSRAAYTTNKLREVTDPEEKRNIIGNTFMTV--CDRV 334

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           +K         QL  + L           +    K   +    +    + +  +      
Sbjct: 335 IK-------ELQLDVENLLLAQGTLRPDLIESGSKYASVNADSIKTHHNDTAVVRLLRDA 387

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
               +  PL D  K+ VR+L   +G+      + Q   F   G     +   +     +G
Sbjct: 388 --GRIIEPLCDYHKDEVRELGARLGIP-RHLVERQP--FPGPGLAIRTLC-TDGTPFRDG 441

Query: 244 DIVHLNGQILGRHNGI 259
           +       +     G 
Sbjct: 442 NFEDTQATVKRVCVGA 457


>gi|32266507|ref|NP_860539.1| NH(3)-dependent NAD(+) synthetase NadE [Helicobacter hepaticus ATCC
           51449]
 gi|46396330|sp|Q7VHF9|NADE_HELHP RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|32262558|gb|AAP77605.1| NH(3)-dependent NAD(+) synthetase NadE [Helicobacter hepaticus ATCC
           51449]
          Length = 274

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 39/221 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRV 79
            +VV+ +SGG+DS+VVA L           TL L +   +A          +   DA  +
Sbjct: 22  KKVVLGLSGGIDSAVVATL----------ATLALGSENVRALLMPSLSSNEEHFNDAFNL 71

Query: 80  CDTINVSHYVF---DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              + +   +     ++E F     +  +  Y      +  +D N+ ++  +  +  R  
Sbjct: 72  AHNLELESKIIQLAPFQENFAKQEGMDLSGKY------MEKLDMNQKMRMGNFCARIRM- 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              +L       + L +G   K   ++              + T    L     P+G + 
Sbjct: 125 --TMLYDCASADNALVLGTSNKSEILL-------------GYGTIFGDLAYAINPIGGLY 169

Query: 197 KESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
           K  +   AR + +   I  K  S D+ F  Q    D+    
Sbjct: 170 KTQIFAFARALNVPQEIIAKKPSADL-FANQSDETDLGYNY 209


>gi|150015538|ref|YP_001307792.1| PP-loop domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902003|gb|ABR32836.1| PP-loop domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 288

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS ++A L   L+R G   ++++ + +   +       K        
Sbjct: 52  EGDKIAVGISGGKDSILMAKLFQELQRHGQVKFELVFLAM---DPGYHPDIKNLLIEN-- 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+  ++++    F   V+   A  Y       PC  C   ++   L + 
Sbjct: 107 -------CEHLNIPIHMYE-SGIF--DVVDKMAKDY-------PCYLC-ARMRRGSLYAK 148

Query: 133 TRQLGADVLATGHY 146
            ++ G + LA GH+
Sbjct: 149 AKEFGCNKLALGHH 162


>gi|55379313|ref|YP_137163.1| argininosuccinate synthase [Haloarcula marismortui ATCC 43049]
 gi|68566235|sp|Q5UZ46|ASSY_HALMA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|55232038|gb|AAV47457.1| argininosuccinate synthase [Haloarcula marismortui ATCC 43049]
          Length = 420

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  V +A SGG+D++V  +LLK + GYD VIGVT+ +       +               
Sbjct: 5   NGTVALAFSGGLDTTVCVSLLKEEYGYDEVIGVTVDVGQPDYEFEEAEETAEA------- 57

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                + V  +V D  E F +  +    ++      PL      R V    +LSV    G
Sbjct: 58  -----LGVEQHVVDATEEFADLCMEAVKANADYQGYPLGTALA-RPVIAKAILSVAEDEG 111

Query: 138 ADVLATG 144
              +A G
Sbjct: 112 CSAVAHG 118


>gi|323499811|ref|ZP_08104770.1| GMP synthase [Vibrio sinaloensis DSM 21326]
 gi|323315052|gb|EGA68104.1| GMP synthase [Vibrio sinaloensis DSM 21326]
          Length = 517

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DQFGLNIIKVDAEERF--------LKALEGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++   A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKRANAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|317487335|ref|ZP_07946129.1| GMP synthase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316921434|gb|EFV42726.1| GMP synthase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 513

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 32/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  VV A+SGGVDS+VVA LL +     IG  L          R G              
Sbjct: 216 DGHVVCALSGGVDSTVVAVLLHKA----IGKNLHCIFVDNGVLRSGEGDEVVTYLR---- 267

Query: 80  CDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +  +++  + + ++RF +    V  P       G T                    R +
Sbjct: 268 -EHFDLNLKLVNAQDRFLDLLAGVEDPEKKRKIIGHTF-----------IDVFDEEARAI 315

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  + LA G  +   +      K    + +           +    ++    L  PL ++
Sbjct: 316 GNVEWLAQG-TLYPDVIESVSHKGPSAVIKSHHN-------VGGLPEKMNMKLIEPLREL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+G+ 
Sbjct: 368 FKDEVRQVGAELGMP 382


>gi|329938153|ref|ZP_08287604.1| GMP synthase [Streptomyces griseoaurantiacus M045]
 gi|329302642|gb|EGG46532.1| GMP synthase [Streptomyces griseoaurantiacus M045]
          Length = 524

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 69/193 (35%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 222 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D EERF                  +   +  R +   + + V  Q  A
Sbjct: 273 VAAT-GVQLKVVDAEERF------------LKALAGVSDPEQKRKIIGREFIRVFEQAQA 319

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           +++A        L  G                  +S + +    +     L  PL  + K
Sbjct: 320 EIIADEGPAVEFLVQGTLYPDVVESGGGTGAANIKSHHNVGGLPEDLEFQLIEPLRKLFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 380 DEVRMVGQELGLP 392


>gi|159795613|pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
 gi|159795614|pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
 gi|159795615|pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
 gi|159795616|pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
          Length = 503

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 37/203 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +     RV++A+SGGVDSS +A LL + G D + V                     +
Sbjct: 202 EVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVF-----------VDHGLLRLGE 250

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
             +       + V+  V D +ERF                  +   +  R +      + 
Sbjct: 251 REEVEGALRALGVNLLVVDAKERF------------LKALKGVEDPEEKRKIIGREFVAA 298

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              V R+ G    LA G      +     G       +           +    +    +
Sbjct: 299 FSQVARERGPFRFLAQGTLYPDVIESA--GGHGAAKIKSHHN-------VGGLPEDLEFE 349

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  P   + K+ VR+LA  +GL 
Sbjct: 350 LLEPFRLLFKDEVRELALLLGLP 372


>gi|195953926|ref|YP_002122216.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933538|gb|ACG58238.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 306

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 44/207 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRD-GYDVIGV-TLQLYNSRKASKRKGSCCAGQDV 73
           K  ++++  SGGVDS V++ L   LK   G + IG+     +    A + +  C      
Sbjct: 19  KGDKILIGFSGGVDSMVLSCLMYKLKDALGIE-IGLAHFNHHLREDADEDEAFCIDF--- 74

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSV 132
                   ++ +  YV              F      G      ++ N   K +  L   
Sbjct: 75  ------AKSLKLPIYV------------ESFDIKSLKGN-----IEENARKKRYEFLQKT 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++ G + +AT H++                 R   L +  S F          ++  PL
Sbjct: 112 SKKEGYNKIATAHHLDDLAE-----TMILWFVRGGGL-KGLSGFKAYK-----ENIIRPL 160

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQD 219
               K+ +R  A+E  L+  +   + D
Sbjct: 161 ITATKDEIRAFAKEQHLNWKEDYTNYD 187


>gi|254303976|ref|ZP_04971334.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324168|gb|EDK89418.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 512

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 46/209 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + +V++ +SGGVDSSV AAL+ +  G  +  +                     
Sbjct: 208 QIKERVGNKQVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKD 256

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +      V     +++    + EERF             AG T     +  R +   + +
Sbjct: 257 EAKQVMEVYAKNFDMNIKCVNAEERFLIK---------LAGVT---DPETKRKIIGKEFV 304

Query: 131 SV----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            V     +++ GA+ LA        I S    G     +         E           
Sbjct: 305 EVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLK 356

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + L     PL ++ K+ VR + RE+G+ 
Sbjct: 357 FELLE----PLRELFKDEVRKVGRELGIP 381


>gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
 gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
          Length = 342

 Score = 54.4 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 92/267 (34%), Gaps = 70/267 (26%)

Query: 1   MVVSEATRLNSLDLDKN---------PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
           M  +EA   +SL L +           +  R+++A+SGG DS+    LL +         
Sbjct: 1   MPAAEAAPDSSLRLSEAGLAALFAPFLRHARILLAVSGGPDST-ALMLLAQR-------- 51

Query: 52  LQLYNSRKASKRK------GSCCAGQDVYDARRV---CDTINVSHYVFDYEERFRNAVIV 102
              +   + +  +            +   +A  V      +++ H + D           
Sbjct: 52  ---WREGRDAGPELAVATVDHGLRAEARTEAEAVGALAARLSLPHAILDLS--------- 99

Query: 103 PFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159
                     +PLP     +  R  ++  LL+  R +GA  +AT H +  +         
Sbjct: 100 ----------SPLPKARLQEAARHARYEALLAHARAIGASAIATAHTLDDQAE-----TV 144

Query: 160 RRIMCRPMDLERDQSYFLFATTQQQ-LC--DLRFPLGDMKKESVRDLAREMGLDIADKSD 216
              + R   +       L     ++ L   +L  PL  + K  + +  R  G+  A+   
Sbjct: 145 LFRLMRGSGIG-----GLAGIPSERALAEVELLRPLLGLPKAHLIEECRRAGIGFAEDPS 199

Query: 217 SQDICFVQQGKYFDVVKRINAGIALEG 243
           ++D  F +       ++ +   +A EG
Sbjct: 200 NRDPRFARAR-----LRALLPALAEEG 221


>gi|319948169|ref|ZP_08022329.1| argininosuccinate synthase [Dietzia cinnamea P4]
 gi|319438153|gb|EFV93113.1| argininosuccinate synthase [Dietzia cinnamea P4]
          Length = 399

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGAEVVAVAIDL------------GQGGEDMDVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F      P   +        P V   +R +    L++  +  G 
Sbjct: 52  LDCGAVESIVVDARDEFAEEYCAPTIKANGLYMRQYPLVSAISRPLIVKHLVTAAKMHGG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 TSVAHG 117


>gi|124486171|ref|YP_001030787.1| NH(3)-dependent NAD(+) synthetase [Methanocorpusculum labreanum Z]
 gi|124363712|gb|ABN07520.1| NH(3)-dependent NAD(+) synthetase [Methanocorpusculum labreanum Z]
          Length = 251

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 62/193 (32%), Gaps = 49/193 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  +L  +      V+GV +             S    QD  DA  +C
Sbjct: 32  VVIGISGGIDSAVACSLCCKALSPERVLGVNM-----------PVSSNNPQDHLDAEELC 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V              V   F +  A   T  P +  N          +  +L    
Sbjct: 81  RGLGVELITVPL-----EDVRAAFLA--APHITDTPVLRGN----------IAARLRMTT 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPM---DLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           L      R  L  G   K   ++       D   D                  PL  + K
Sbjct: 124 LYNITAARKYLVCGTSNKTEYMIGYSTKWGDSAAD----------------IQPLLHLWK 167

Query: 198 ESVRDLAREMGLD 210
           + V  LA+E+G+ 
Sbjct: 168 KDVYLLAKELGVP 180


>gi|325679373|ref|ZP_08158958.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Ruminococcus albus 8]
 gi|324108970|gb|EGC03201.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Ruminococcus albus 8]
          Length = 513

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +   D +V++A+SGGVDSSV+AALL +  G  +  +     +     K +G      
Sbjct: 211 DIREKVGDGKVLLALSGGVDSSVLAALLSKAVGRQLTCIF---VDHGFMRKNEGD----- 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +        +++    + +E+F +    V  P       GE                
Sbjct: 263 ---EVEAAFKDWDINFVRVNAKEQFMSKLRGVSDPETKRKTIGEEF-----------IRV 308

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
             +  +++G  D LA G        V + G     + +           +          
Sbjct: 309 FEAEAKKIGHVDFLAQG---TIYPDVIESGAGDAAVIKSHHN-------VGGLPDYVDFK 358

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+  R L +E+GL 
Sbjct: 359 EIIEPLRMLFKDETRKLGQELGLS 382


>gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 455

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 39/203 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DARRV 79
            R+ VA+SGG DS  +  L+           L  + +  +         G     DA  V
Sbjct: 25  KRIAVAVSGGSDSMALLWLM-----------LNCWPNDISVIHVEHGIRGDSSKADACFV 73

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              C  +++  ++                     GE+        R ++   L S   ++
Sbjct: 74  KEHCKKLDIPCFILS----------RDVPVEAMKGES---LEQAARRIRHEALASKAEEI 120

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G+D +A GH         DD      +          +Y L     +       P+ ++ 
Sbjct: 121 GSDFVALGH-------NSDDTVETFFLNLARGSG---AYGLAGIP-EVRDRFVRPVLEVS 169

Query: 197 KESVRDLAREMGLDIADKSDSQD 219
           ++ +R+L +E+G    +   +Q+
Sbjct: 170 RDELRELLKEVGWGWVEDESNQE 192


>gi|255692690|ref|ZP_05416365.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565]
 gi|260621576|gb|EEX44447.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565]
          Length = 426

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            + +++VA+SGG DS V    +L   GY         +   + S R        D    R
Sbjct: 18  SENKILVALSGGADS-VALLCILHTAGYRCEAAHCNFHLRGEESNR--------DEQFVR 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++C+   ++ +  D+               + + E         R ++++      +   
Sbjct: 69  QLCEKYKINLHTIDF------DTTRYATEKHISIEMGA------RELRYNWFEKTRKDCQ 116

Query: 138 ADVLATGHY 146
           ADV+A  H+
Sbjct: 117 ADVIAVAHH 125


>gi|227497304|ref|ZP_03927536.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833175|gb|EEH65558.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 534

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 64/209 (30%), Gaps = 53/209 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDSSV AAL+ R  G  +  +                    + V   + 
Sbjct: 229 DAHVICGLSGGVDSSVAAALVHRAIGDQLTCIF--------VDHGLLRAGEREQVE--QD 278

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQ 135
               + +     D  ERF +A          AG T     +  R +   +        ++
Sbjct: 279 YAAGMGIRVITVDESERFLSA---------LAGVT---DPETKRKIIGREFIRSFEAAQR 326

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMC--------------RPMDLERDQSYFLFATT 181
                       R    VG+ G   + +                     +   + +    
Sbjct: 327 ------------RVIEMVGEQGGEIKFLVQGTLYPDVVESGGGTGTANIKSH-HNVGGLP 373

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 L  PL  + K+ VR + RE+G+ 
Sbjct: 374 DDLNFALIEPLRTLFKDEVRAIGRELGVP 402


>gi|85859860|ref|YP_462062.1| GMP synthase [Syntrophus aciditrophicus SB]
 gi|85722951|gb|ABC77894.1| GMP synthase (glutamine-hydrolyzing) [Syntrophus aciditrophicus SB]
          Length = 296

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 53/213 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            VA SGGVDS+ +    +   G  V  +T                   +++ +A R+ +T
Sbjct: 46  AVAFSGGVDSTFLLWAAREALGDSVTALT-----------ASAPYMPKEEICEAGRIAET 94

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I V H V +           P            P   C  C R + FS + +   Q G  
Sbjct: 95  IGVRHAVLEI----------PLNEEIR----FNPDDRCFRCKRQL-FSAMKAEADQRGIP 139

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G  +       DD +  R   + +   +  S  L                  +K+ 
Sbjct: 140 SVLDGSNL-------DDLQDYRPGMKALKELKVPSPLLEQ--------------RWRKKE 178

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           +R + RE+GL    K+   D C + +  Y   +
Sbjct: 179 IRKIGREIGLPNWQKAP--DACLLSRMPYGHEI 209


>gi|329723158|gb|EGG59690.1| TIGR00268 family protein [Staphylococcus epidermidis VCU144]
 gi|329734098|gb|EGG70417.1| TIGR00268 family protein [Staphylococcus epidermidis VCU028]
          Length = 275

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 43/212 (20%)

Query: 7   TRLNSLDL--DKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           T LN+ ++  D   KDM+ VV+A SGGVDSS    LLK+   D++GV     N  K    
Sbjct: 2   TELNTKEMKLDALLKDMQSVVIAFSGGVDSS---LLLKKA-IDILGV-----NYVKPVVV 52

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           K      ++   A ++  ++ V     +  E     ++     S+            ++ 
Sbjct: 53  KSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTPESW----------YYSKR 102

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           + +S L ++  +LG + +  G        + DD    R   +  D            +  
Sbjct: 103 LMYSQLENIKNKLGFNYVLDG-------MIMDDLDDFRPGLKARDD-------FGVRSVL 148

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           Q   L        K  VR+L+ +  L + +K 
Sbjct: 149 QEAKLY-------KSEVRELSHQHDLPVWNKP 173


>gi|311067107|ref|YP_003972030.1| GMP synthase [Bacillus atrophaeus 1942]
 gi|310867624|gb|ADP31099.1| GMP synthase [Bacillus atrophaeus 1942]
          Length = 513

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKNVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGSELGIP 382


>gi|294786811|ref|ZP_06752065.1| GMP synthase (Glutamine amidotransferase) [Parascardovia
           denticolens F0305]
 gi|315226441|ref|ZP_07868229.1| GMP synthase [Parascardovia denticolens DSM 10105]
 gi|294485644|gb|EFG33278.1| GMP synthase (Glutamine amidotransferase) [Parascardovia
           denticolens F0305]
 gi|315120573|gb|EFT83705.1| GMP synthase [Parascardovia denticolens DSM 10105]
          Length = 520

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 47/206 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDAR 77
           D +V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D   A 
Sbjct: 215 DKQVICGLSGGVDSAVAAALVHKAIGEQLTCVF-----VDHGFLRKGEVEQVKHDFVKAT 269

Query: 78  RVCDTINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTV 124
                  +     D  E F            +  +I   F  ++      +     N   
Sbjct: 270 ------GIKLVAVDASEDFLSALKGVSEPERKRKIIGEKFIRTFEKAARDIVAQAGNEGG 323

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +   L+  T             + S    G    +       +  + D S          
Sbjct: 324 EVKFLVQGTL--------YPDVVESGGGSGTANIKSHHNVGGLPADLDFS---------- 365

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL  + K+ VR +  E+GL 
Sbjct: 366 ---LIEPLRTLFKDEVRAIGTELGLP 388


>gi|282874936|ref|ZP_06283811.1| conserved hypothetical protein TIGR00268 [Staphylococcus
           epidermidis SK135]
 gi|281296264|gb|EFA88783.1| conserved hypothetical protein TIGR00268 [Staphylococcus
           epidermidis SK135]
          Length = 275

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 43/212 (20%)

Query: 7   TRLNSLDL--DKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           T LN+ ++  D   KDM+ VV+A SGGVDSS    LLK+   D++GV     N  K    
Sbjct: 2   TELNTKEMKLDALLKDMQSVVIAFSGGVDSS---LLLKKA-IDILGV-----NYVKPVVV 52

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
           K      ++   A ++  ++ V     +  E     ++     S+            ++ 
Sbjct: 53  KSELFRNEEFELALKLGQSLGVEVLETEMSELQDANIVKNTPESW----------YYSKR 102

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           + +S L ++  +LG + +  G        + DD    R   +  D            +  
Sbjct: 103 LMYSQLENIKNKLGFNYVLDG-------MIMDDLDDFRPGLKARDD-------FGVRSVL 148

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           Q   L        K  VR+L+ +  L + +K 
Sbjct: 149 QEAKLY-------KSEVRELSHQHDLPVWNKP 173


>gi|225016463|ref|ZP_03705655.1| hypothetical protein CLOSTMETH_00369 [Clostridium methylpentosum
           DSM 5476]
 gi|224950765|gb|EEG31974.1| hypothetical protein CLOSTMETH_00369 [Clostridium methylpentosum
           DSM 5476]
          Length = 510

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 42/206 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
           D+ +   + +V++A+SGGVDSSV+AALL +  G  +  V      ++    +       +
Sbjct: 208 DIREKVGNGKVLLALSGGVDSSVLAALLSKAIGSQLTCVFVDHGLMR----KNEGDEVEA 263

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
             +  D+   R             + E+RF   +                 +     ++ 
Sbjct: 264 AFSDWDLNFVR------------VNAEDRFLAKLAGVSDPETKRK------IIGEEFIRV 305

Query: 127 SDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ- 184
                  +++GA D LA G        V + G     + +           +        
Sbjct: 306 --FEEEAKKIGAVDFLAQG---TIYPDVIESGTGDAAVIKSHHN-------VGGLPDYVD 353

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             ++  PL  + K+ VR L  E+GL 
Sbjct: 354 FKEIVEPLRLLFKDEVRQLGMELGLA 379


>gi|325955278|ref|YP_004238938.1| GMP synthase (glutamine-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437896|gb|ADX68360.1| GMP synthase (glutamine-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 510

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 70/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYNSR------ 58
           D +V++ +SGGVDSSV A L+ R  G  +  +               ++ Y         
Sbjct: 213 DKKVILGLSGGVDSSVAAVLIHRAIGDQLTCIFVDTGLLRKDEGKKVMENYGKHFQMNIK 272

Query: 59  --KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
              AS+R  S   G D  +A+R   +I       D+   F         +S+ A  T  P
Sbjct: 273 MVDASERFLSNLKGIDDPEAKR--KSIG-----HDFVAVFDEESKKFGDASFLAQGTIYP 325

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V  +++VK                  G     + +                        
Sbjct: 326 DVIESQSVK------------------GPSATIKSHHN---------------------- 345

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     +    L  PL ++ K+ VR +   +G+ 
Sbjct: 346 VGGLPDEMKLTLLEPLRELFKDEVRQVGVALGIP 379


>gi|300123017|emb|CBK24024.2| unnamed protein product [Blastocystis hominis]
 gi|300175673|emb|CBK20984.2| unnamed protein product [Blastocystis hominis]
          Length = 576

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 37/200 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           ++  V+ A+SGGVDSSV A LL R     IG      L ++               + +A
Sbjct: 275 EEGHVIGAVSGGVDSSVAAVLLNRA----IGKRFHAVLVDNG-----------VLRLNEA 319

Query: 77  RRVCDTI---NVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           + V + +    +  ++ D  E F      V  P       G T                 
Sbjct: 320 KEVMERLGAAGIDLHLADASELFLAKLAGVSDPEKKRKIIGTTF-----------IDVFE 368

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +++  +V      ++  LY   D         P    +   + +    +     L  
Sbjct: 369 EEAKKIEQEVGHVDFLLQGTLY--PDVIESTSFRGPSATIKSH-HNVGGLKENMKLKLIE 425

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L  E+GL 
Sbjct: 426 PLRELFKDEVRALGAELGLP 445


>gi|294674844|ref|YP_003575460.1| argininosuccinate synthase [Prevotella ruminicola 23]
 gi|294471726|gb|ADE81115.1| argininosuccinate synthase [Prevotella ruminicola 23]
          Length = 400

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VVVA SGG+D+S     L +DG+DV                     + + +      
Sbjct: 3   NKKVVVAFSGGLDTSYTVMKLTQDGWDVYAA-----------CANTGGFSDEQLKKNEEN 51

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQL 136
              +    YV  D    +    +              P    +  + F    +    +++
Sbjct: 52  AFKLGAKAYVTLDVTHEYYEKSLKYMIFGNVLRNNCYPISVSSERI-FQAIAIARYAKEI 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADAIAHG 118


>gi|307176970|gb|EFN66276.1| Asparagine synthetase [glutamine-hydrolyzing] [Camponotus
           floridanus]
          Length = 560

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 62/188 (32%), Gaps = 41/188 (21%)

Query: 2   VVSEATRLNSLDLDKNPK-------------DMRVVVAMSGGVDSSVVAALLKRDGYDVI 48
           V      LN  D+  N +             D R+   +SGG+DSS+VAALL +   +  
Sbjct: 216 VFIPWPTLNPKDIHGNIRKLLSAAVEKRLMADRRIGCLLSGGLDSSLVAALLVKQAKE-- 273

Query: 49  GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV------ 102
                    +  S   G      D+  AR+V D I   H+   + E     VI       
Sbjct: 274 ----HNLPYKIQSFAIGM-GDSPDIVAARQVADYIGSEHHEIIFTE---KDVIDILNKVI 325

Query: 103 PFASSYA----AGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH-YIRSRLYVGDDG 157
               +Y              +   TV FS         GAD LA G+ Y R      D  
Sbjct: 326 YSLETYDITTIRASIGYIKQNTETTVIFSG-------EGADELAQGYIYFRDAPSAADAH 378

Query: 158 KRRRIMCR 165
                + +
Sbjct: 379 NESLRLLK 386


>gi|159904232|ref|YP_001551576.1| PP family ATPase [Prochlorococcus marinus str. MIT 9211]
 gi|159889408|gb|ABX09622.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. MIT 9211]
          Length = 288

 Score = 54.4 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 59/249 (23%)

Query: 5   EATRLNSLDL--DKNPKDMRVVVAMSGGVDSSVVAALLKRD-G---YDVIGVTLQLYNSR 58
            A +L  L+L  D   +  +V +A SGGVDSS++AA+ K   G     V GV        
Sbjct: 10  NAPQLQQLELLRDAIKQIGKVCIAYSGGVDSSLIAAIAKEQLGTNALAVTGV-------- 61

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PC 117
                     A     +A++    I + H             I     S    + P+  C
Sbjct: 62  ------SDSLAPHLRKEAQQQAAWIGIKH----------TECITNELESPDYNQNPVDRC 105

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C + +  + L ++        +  G      +   D G  R  +              
Sbjct: 106 FACKQEL-HTHLANIASNFKESQVIDG------VNFDDLGDHRPGIQAAR---------- 148

Query: 178 FATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
                  L  +R PL +  ++K ++RD+++ +G    DK  SQ  C   +  Y + +  +
Sbjct: 149 -------LAGVRSPLAELKIRKSTIRDISKALGFPWWDKP-SQP-CLASRFPYGESISSL 199

Query: 236 NAGIALEGD 244
                 +G+
Sbjct: 200 RLAQVAKGE 208


>gi|313157960|gb|EFR57366.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Alistipes sp. HGB5]
          Length = 519

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTL------QLYNSRKASKR-- 63
           +L +   D +VV+ +SGGVDSSV A LL +  G ++  + +      +            
Sbjct: 216 ELREKLGDDKVVLGLSGGVDSSVAAVLLHKAIGKNLYCIFVDSGLLRKNEFEDVLESYKN 275

Query: 64  -----KGSCCAGQDVYDARRVCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                KG     + + D   VCD      +     D+ E F    +      + A  T  
Sbjct: 276 MGLNVKGVKAGAKFLGDLAGVCDPETKRKI--IGRDFVEVFNEEAVQIKDVRWLAQGTIY 333

Query: 116 PCV 118
           P V
Sbjct: 334 PDV 336


>gi|332158033|ref|YP_004423312.1| hypothetical protein PNA2_0391 [Pyrococcus sp. NA2]
 gi|331033496|gb|AEC51308.1| hypothetical protein PNA2_0391 [Pyrococcus sp. NA2]
          Length = 198

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 81/233 (34%), Gaps = 47/233 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MRVV  +S G+DS V   L+   G +V  +  +  + ++                A+R+ 
Sbjct: 1   MRVVALLSSGIDSPVAIHLMASRGAEVYPLHFRQDDIKENK--------------AKRIV 46

Query: 81  DTINVSH--YVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCNRTVKFSDLLSVTRQLG 137
             +   H   V D +      V  P        G+    C+ C  T+         +++ 
Sbjct: 47  KRLQEIHGDKVRDLKIVDAFEVQGPVFEKLKEIGKVKWTCIFCKYTMYMVAE-RYAKEVN 105

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ + TG  +                        D    +   T+  +     PL  + K
Sbjct: 106 AEAILTGDSLGQV----------------ASQTLDNLLVISTATKLPVIR---PLIGLDK 146

Query: 198 ESVRDLAREMGLDIADKSDSQDIC-FVQQ--------GKYFDVVKRINAGIAL 241
           E +  +A+E+G       +S+  C FV +        G++  +++++   +  
Sbjct: 147 EEIVKIAKEIG-TFEISIESEPSCPFVPRFPVVRAGLGEFRKILEKVEPLLPK 198


>gi|308062320|gb|ADO04208.1| GMP synthase [Helicobacter pylori Cuz20]
          Length = 508

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F + +       +     GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPEWKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+G+ 
Sbjct: 358 PLRELFKDEVRLLGKELGIS 377


>gi|307213208|gb|EFN88703.1| GMP synthase [glutamine-hydrolyzing] [Harpegnathos saltator]
          Length = 718

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 52/228 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + +V++ +SGGVDS+V AALL     K     VI + +          RKG   + +   
Sbjct: 240 NKKVLLLVSGGVDSTVCAALLHKALSKEQ---VIALHINN-----GFMRKGETQSVE--- 288

Query: 75  DARRVCDTINVSHYVFDYEERFR--------NAVIVPFASSYAAGE-------------T 113
             + +   + V   V +    F         + +     ++    +             T
Sbjct: 289 --QSLA-QLGVKLKVVNAGRCFMQGTTTVPLDNIASMMNANVTNNKGMCGTASSPRTRLT 345

Query: 114 PLPCVDCN----RTVKFSDLLSVTRQLGADVLATGH--YIRSRLYVGDDGKRRRIMCRPM 167
            + C   N    R +     + V  +  A++       ++       D  +    +    
Sbjct: 346 KMLCETTNPEEKRKIIGDIFVRVANETMAEMGLKPEDVFLGQGTLRPDLIESASALVSGK 405

Query: 168 -DLER---DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
            D+ +   + S  +     Q    +  PL D  K+ VR L  ++GL  
Sbjct: 406 ADVIKTHHNDSELVRVLRAQ--GHVVEPLKDFHKDEVRQLGCDLGLPT 451


>gi|160892659|ref|ZP_02073449.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50]
 gi|156865700|gb|EDO59131.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50]
          Length = 251

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 28/131 (21%)

Query: 22  RVVVAMSGGVDS---SVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS       A L+R     +D+I +T+ L      + +            
Sbjct: 25  KIAVGISGGKDSLTLLYALAELRRFYPKKFDLIAITVNLGFDNFDTAK------------ 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             ++C  ++V +Y+ D  E + + V               PC  C +  K   L      
Sbjct: 73  IEQLCKELDVPYYIVD-TEIY-DIVFNVRKEK-------NPCSLCAKMRK-GALNQKLND 122

Query: 136 LGADVLATGHY 146
           LG + +A  H+
Sbjct: 123 LGCNKIAYAHH 133


>gi|241662973|ref|YP_002981333.1| GMP synthase [Ralstonia pickettii 12D]
 gi|240865000|gb|ACS62661.1| GMP synthase, large subunit [Ralstonia pickettii 12D]
          Length = 539

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                   G+ V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF--------VDHGLLRLDEGKMVMD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 275 RLHAKVVHVDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|51891639|ref|YP_074330.1| GMP synthase [Symbiobacterium thermophilum IAM 14863]
 gi|81389576|sp|Q67S57|GUAA_SYMTH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|51855328|dbj|BAD39486.1| GMP synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 513

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 30/191 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSV A L+ +  G  +  +            RKG           R   
Sbjct: 220 RVLCALSGGVDSSVAAVLVHKAVGDQLTCIF-----VDHGLMRKGEPEQV-----VRTFR 269

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
           D  ++     D  ERF + +                 +  N  ++        R+LG  D
Sbjct: 270 DHFHIHLVHVDASERFLSKLRGVTDPEQKRK------IIGNEFIR--LFEDEARKLGQID 321

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G        V + G     + +           +    +     L  P   + K+ 
Sbjct: 322 FLVQG---TVYPDVIESGTETARVIKSHHN-------VGGLPEDMRFQLIEPFRQLFKDE 371

Query: 200 VRDLAREMGLD 210
           VR + R +G+ 
Sbjct: 372 VRAVGRALGVP 382


>gi|167589354|ref|ZP_02381742.1| GMP synthase, large subunit [Burkholderia ubonensis Bu]
          Length = 539

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ-----MVLD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 275 RLHAKVVHVDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 KAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|226306765|ref|YP_002766725.1| argininosuccinate synthase [Rhodococcus erythropolis PR4]
 gi|259585367|sp|C1A051|ASSY_RHOE4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226185882|dbj|BAH33986.1| argininosuccinate synthase [Rhodococcus erythropolis PR4]
          Length = 399

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGAEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F +   +P  ++ A      P V   +R +    ++   R  G 
Sbjct: 52  IDCGAVESVVVDARDEFADEYCLPTIAANALYMDRYPLVSAISRPLIVKHIVEAARSHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            +++ G                    +  D  R +  F       Q   +  P+ D    
Sbjct: 112 TIVSHG-----------------CTGKGNDQVRFEVGFGALAPDLQ---VIAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENNIPINVSKKS 172


>gi|30248125|ref|NP_840195.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|44887949|sp|Q82XZ6|GUAA_NITEU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|30180010|emb|CAD84005.1| guaA; GMP synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 519

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +VV+ +SGGVDSSV AAL+ R  G  ++ V +                    + +A++
Sbjct: 221 NDKVVLGLSGGVDSSVAAALIHRAIGDQLVCVFVDN--------------GLLRLNEAKQ 266

Query: 79  V----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-- 132
           +       + V+    D   +F              G T     +  R     + + +  
Sbjct: 267 IMETFSRNLAVNVIYIDAGRQFLEQ---------LKGIT---DPEQKRRTIGREFVEIFQ 314

Query: 133 --TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++  A  LA G      +       ++  + +           +    +     L 
Sbjct: 315 QEAEKIENAKWLAQGTIYPDVIESAGSHTKKAGVIKSHHN-------VGGLPETLHLKLL 367

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR+L   +GL 
Sbjct: 368 EPLRELFKDEVRELGLALGLP 388


>gi|283783106|ref|YP_003373860.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Gardnerella vaginalis 409-05]
 gi|298253862|ref|ZP_06977449.1| GMP synthase [Gardnerella vaginalis 5-1]
 gi|283441154|gb|ADB13620.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Gardnerella vaginalis 409-05]
 gi|297532005|gb|EFH70980.1| GMP synthase [Gardnerella vaginalis 5-1]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 47/203 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGNQLTCVF-----VDHGLLRKGEVEQVKHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFS 127
               +     D E+ F            +  +I   F  ++   +               
Sbjct: 270 ---GIKLIAVDAEDDFLNALKGVSEPERKRKIIGEKFIRTFEKAQ--------------R 312

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            ++    + GA+V            V   G       +           +    +     
Sbjct: 313 QVIEEAGKTGAEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDLKFK 365

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  E+GL 
Sbjct: 366 LIEPLRTLFKDEVRAIGTELGLP 388


>gi|257870487|ref|ZP_05650140.1| GMP synthase [Enterococcus gallinarum EG2]
 gi|257804651|gb|EEV33473.1| GMP synthase [Enterococcus gallinarum EG2]
          Length = 521

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 205 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHG 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 260 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 310

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 311 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 356

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 390


>gi|255530904|ref|YP_003091276.1| GMP synthase [Pedobacter heparinus DSM 2366]
 gi|255343888|gb|ACU03214.1| GMP synthase, large subunit [Pedobacter heparinus DSM 2366]
          Length = 508

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 66/206 (32%), Gaps = 41/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           DL +   + +VV+A+SGGVDSSV A LL +     IG  L          RK    A  +
Sbjct: 205 DLKEKLGNDKVVLALSGGVDSSVAAILLHKA----IGKNLHCIFVDNGLLRKDEYAAVLE 260

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            Y        + ++    D ++RF +    V  P     A G   +              
Sbjct: 261 QY------KHLGLNIKGVDAKDRFLSQLAGVSDPELKRKAIGRVFIEV-----------F 303

Query: 130 LSVTRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                Q+     LA        I S    G     +                +       
Sbjct: 304 DDEAHQVQDVKWLAQGTIYPDIIESVSVKGPSATIKSHHN------------VGGLPDFM 351

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              +  PL  + K+ VR +   +GL+
Sbjct: 352 KLKVVEPLNTLFKDEVRRVGTSLGLE 377


>gi|269926813|ref|YP_003323436.1| ExsB family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790473|gb|ACZ42614.1| ExsB family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 278

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LL    Y+V+G      +   A+         ++  +A      
Sbjct: 20  VLVAYSGGVDST----LLAAVAYEVLG------DKAAAATAISESLLEEEFKEAEENARK 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I +       EE      +            P  C  C   + F+ L ++ +Q G  V+ 
Sbjct: 70  IGIRFIPIHTEELSDPRYV---------ANNPDRCYYCKSEL-FTKLSALAKQEGYAVVV 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G        + D    R       +L                  +R PL +  + K  +
Sbjct: 120 DG------FNLDDSHDYRPGHQAAKELG-----------------IRSPLAEAGLTKAEI 156

Query: 201 RDLAREMGLDIADKS 215
           R +++  GL   DK 
Sbjct: 157 RQISKLKGLPTWDKP 171


>gi|153808575|ref|ZP_01961243.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185]
 gi|149128897|gb|EDM20114.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185]
          Length = 426

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            D +++VA+SGG DS V     L   GY         +   + S R        D    R
Sbjct: 18  SDSKILVALSGGADS-VALLRILHTAGYHCEAAHCNFHLRGEESNR--------DESFVR 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++C   N+  +  D+            A  + + E         R ++++    +  +  
Sbjct: 69  QLCLKYNIRLHTTDFNTT------QYAAEKHISIE------MAARELRYNWFEEIKNKYR 116

Query: 138 ADVLATGHY 146
           ADV+A  H+
Sbjct: 117 ADVIAVAHH 125


>gi|294790765|ref|ZP_06755923.1| GMP synthase (Glutamine amidotransferase) [Scardovia inopinata
           F0304]
 gi|294458662|gb|EFG27015.1| GMP synthase (Glutamine amidotransferase) [Scardovia inopinata
           F0304]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 63/212 (29%), Gaps = 59/212 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDAR 77
           D RV+  +SGGVDS+V AAL+ +  G  +  V            RKG       D   A 
Sbjct: 215 DKRVICGLSGGVDSAVAAALVHKAVGDQLTCVF-----VDHGLLRKGEVEQVKHDFVQAT 269

Query: 78  RVCDTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG-ETPLPCVD-CNR 122
                  +     D  E F            +  +I   F  ++       +        
Sbjct: 270 ------GIKLVTVDASEEFLSALDGVTEPERKRKIIGEKFIRTFEKATRQIVADAHDEGG 323

Query: 123 TVKF---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
            +KF     L   V    G D  A      +   + +D                      
Sbjct: 324 EIKFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPED---------------------- 361

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    L  PL  + K+ VR +  ++GL 
Sbjct: 362 -LDFE----LIEPLRTLFKDEVRAIGTKLGLP 388


>gi|258405113|ref|YP_003197855.1| GMP synthase [Desulfohalobium retbaense DSM 5692]
 gi|257797340|gb|ACV68277.1| GMP synthase, large subunit [Desulfohalobium retbaense DSM 5692]
          Length = 515

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 56/207 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLY----NSRKASKRKGSCCAGQDVY 74
           D +VV  +SGG+DS+VVA LL +  G  +  + +       +  +   +        ++ 
Sbjct: 218 DGKVVCGLSGGIDSTVVAVLLHKAIGKQLHCIFVDNGLLRQDEGEEVVQYLRRHFDLNLK 277

Query: 75  DARRVCDTINVSHYVFD-----------YEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
             +     ++  H V D           + E F           Y A  T  P V  + +
Sbjct: 278 YVQAQDRFLSRLHGVEDPEEKRKIIGHTFIEVFEEEAKEIKDVQYLAQGTLYPDVIESVS 337

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
            K           G   +   H+                              +    ++
Sbjct: 338 FK-----------GPSAVIKSHHN-----------------------------VGGLPER 357

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
              DL  PL ++ K+ VR +A E+GL 
Sbjct: 358 MQMDLVEPLRELFKDEVRKVAVELGLP 384


>gi|222480998|ref|YP_002567235.1| GMP synthase, large subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|254799663|sp|B9LTX1|GUAAB_HALLT RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|222453900|gb|ACM58165.1| GMP synthase, large subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 305

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 118/340 (34%), Gaps = 56/340 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D   V+A+SGGVDSSV A L     Y+ +G      +               +
Sbjct: 14  EIREAIGDANAVIALSGGVDSSVAATLA----YEAVG------DQLTPVYVDTGLMRKGE 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS- 131
             + R     +  S  V + +ERF +           AG T     +  R V     +  
Sbjct: 64  TEEIRETFSFME-SLRVIEAQERFFDR---------LAGVT---DPEEKRHVIGEGFIDE 110

Query: 132 ---VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V   +GAD L  G     R+    + K    +    D+                  +
Sbjct: 111 FETVANDVGADYLVQGTIYPDRIESEGNIKSHHNVGGLPDIV-------------DFEGI 157

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVH 247
             P+ D+ K+ VR++AR +GL   ++  S+ + F   G    +V  +     A+  +  H
Sbjct: 158 VEPVRDLYKDEVREVARALGL---EEVISERMPFPGPGLAVRIVGEVTPEKAAVAREATH 214

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI-VGPRESLEVHRIYLR 306
           +  + L  ++    +     +  G        V   ++    V+ V   ES +      +
Sbjct: 215 VVEEELEEYDPWQAFAAVLGKATG--------VKGDNRVHGWVVAVRSVESRDGMTARAQ 266

Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRN 344
           E++W      +  +    +   ++    +  P P  ++  
Sbjct: 267 ELDWSTLQRIQSRITGENENVARVVYDVTHKP-PATIEYE 305


>gi|154337399|ref|XP_001564932.1| GMP synthase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061971|emb|CAM45055.1| putative glutamine amidotransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 656

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGV-----TLQLYNSRKASKRKGSC 67
           ++     +V+   SGGVDS+V A LL +  G + V+ +      ++L+ S +  +   + 
Sbjct: 217 ERTSNGQKVLCLASGGVDSTVCAMLLLKALGPERVVCIHIDHGFMRLHESAQVVEALNAA 276

Query: 68  CAGQDVYDAR---------------RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
                +  A+               R   T N      D     +  +I         G 
Sbjct: 277 GVRVHLVKAQDDFATASTVMTAKRGRAAYTTNKLCETTD--PEEKRNII---------GN 325

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           T +    C+R VK         QL  + L           +    K        +    +
Sbjct: 326 TFMSV--CDRVVK-------ELQLDVENLLLAQGTLRPDLIESGSKYASANADAIKTHHN 376

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +  +          +  PL D  K+ VRDL   +G+ 
Sbjct: 377 DTAVVRVLRDA--GRIIEPLCDYHKDEVRDLGLRLGIS 412


>gi|47204754|emb|CAF92957.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 164

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  VV+A SGG+D+S +   LK  GYDVI   L      +            D   A+ 
Sbjct: 1   SEGTVVLAYSGGLDTSCILVWLKEQGYDVI-TFLANVGQDE------------DFKAAKE 47

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDL 129
             +T+     ++ D    F    I P   + A  E           PC+          L
Sbjct: 48  KAETLGAKKVFIEDVRAEFVEDFIWPALQANAVYEDRYLLGTAIARPCIA-------RKL 100

Query: 130 LSVTRQLGADVLATG 144
           + +  + GA  ++ G
Sbjct: 101 VEIAVREGAQFVSHG 115


>gi|309782108|ref|ZP_07676838.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia sp. 5_7_47FAA]
 gi|308919174|gb|EFP64841.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia sp. 5_7_47FAA]
          Length = 539

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                   G+ V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF--------VDHGLLRLDEGKMVMD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 275 RLHAKVVHVDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|50285935|ref|XP_445396.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524700|emb|CAG58302.1| unnamed protein product [Candida glabrata]
          Length = 420

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+S++ A L   GY+V+   +                  +D   AR 
Sbjct: 2   SKGKVCLAYSGGLDTSIILAWLLEQGYEVVA-FMA------------DVGQEEDFEAARA 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
               I      + D  E+F   +I P           Y  G +    V     +      
Sbjct: 49  KALKIGATKVVISDVREQFVKDIIFPAVQVNAVYEDVYLLGTSLARPVIAKAQI------ 102

Query: 131 SVTRQLGADVLATG 144
            V  Q G   ++ G
Sbjct: 103 DVAEQEGCFAVSHG 116


>gi|89094683|ref|ZP_01167619.1| argininosuccinate synthase [Oceanospirillum sp. MED92]
 gi|89081029|gb|EAR60265.1| argininosuccinate synthase [Oceanospirillum sp. MED92]
          Length = 408

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVRWLQDE-YNAEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  EALGVKEIYIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|319898211|ref|YP_004158304.1| Argininosuccinate synthase [Bartonella clarridgeiae 73]
 gi|319402175|emb|CBI75706.1| Argininosuccinate synthase [Bartonella clarridgeiae 73]
          Length = 407

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 26/139 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +VV+A SGG+D+S+   +LK          LQ     +          G+++
Sbjct: 1   MKKWKDIKKVVLAYSGGLDTSI---ILK---------WLQNELEAEVVTFTADLGQGEEL 48

Query: 74  YDARRVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVK 125
             ARR  + + V   Y+ D  E F    + P   +       Y  G +    +   R   
Sbjct: 49  EPARRKAEMLGVKKIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKR--- 105

Query: 126 FSDLLSVTRQLGADVLATG 144
              L+ + ++  AD +A G
Sbjct: 106 ---LVEIAKETNADAIAHG 121


>gi|326783916|ref|YP_004324310.1| NAD+ synthetase [Synechococcus phage S-SSM7]
 gi|310003928|gb|ADO98323.1| NAD+ synthetase [Synechococcus phage S-SSM7]
          Length = 253

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 66/191 (34%), Gaps = 42/191 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDG---YDVIGVTL-QLYNSRKASKRKGSCCAGQDVYDARRV 79
           VV +SGG+DS+V + L  R G   Y VIG+ L Q       S       A          
Sbjct: 31  VVGVSGGIDSAVASTLAVRTGLPTY-VIGMPLNQNIEQETLSDAHMFWLAKNYP------ 83

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQLG 137
               NV H   D  E +   ++    + +    T  P    N    ++   L  V   +G
Sbjct: 84  ----NVKHLKADLSESY-AKLMSDLTNEFGLEYTGNPLAKANTKSRLRMVTLYHVAANVG 138

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             V+ TG+       V D G          D   D                  P+ D+ K
Sbjct: 139 GIVVGTGN------KVEDYGVGFYTKY--GDGGVD----------------IAPIADLYK 174

Query: 198 ESVRDLAREMG 208
             VR+L RE+G
Sbjct: 175 SEVRELGRELG 185


>gi|303244454|ref|ZP_07330789.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanothermococcus okinawensis IH1]
 gi|302485152|gb|EFL48081.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanothermococcus okinawensis IH1]
          Length = 433

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 77/206 (37%), Gaps = 40/206 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARR 78
             +V++ +S G+DS V + L+ + G + + + L++     K +++  +     D      
Sbjct: 240 QGKVLILLSDGIDSPVASYLMIKRGCNAVFLHLKISEEGLKKTEKIFNVLNDYDYTS--- 296

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLG 137
                     V DY+E  +N  I         G+    C+ C + + K ++     ++L 
Sbjct: 297 -------KLIVKDYKEELQN--IKSCLKEI--GKEKYTCIFCKKNMLKIAE--KYAKELN 343

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +  G  +                       ++ +      +   L     PL  + K
Sbjct: 344 CDAIVNGDNLGQV---------------ASQTLKNIAVISRGISYPILR----PLIGLDK 384

Query: 198 ESVRDLAREMGLDIADKSDSQDI-CF 222
             + D+++++G      S S++I CF
Sbjct: 385 NEIIDISKKIG--TYGISTSKEIKCF 408


>gi|198275231|ref|ZP_03207762.1| hypothetical protein BACPLE_01390 [Bacteroides plebeius DSM 17135]
 gi|198271814|gb|EDY96084.1| hypothetical protein BACPLE_01390 [Bacteroides plebeius DSM 17135]
          Length = 517

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +VV+ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 ELKQQLGDDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNE----FKN 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++D     + + ++    D  E+F +           AG T  P  +  R +     + 
Sbjct: 259 VLHDY----ECLGLNVIGVDASEKFFSE---------LAGVT-EP--ERKRKIIGKGFID 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  +  A  +    ++       D  +   I    +    +    +    ++    L  P
Sbjct: 303 VFDE-EAHKIQDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LRLLFKDEVRRVGRELGMP 376


>gi|257059865|ref|YP_003137753.1| exsB protein [Cyanothece sp. PCC 8802]
 gi|256590031|gb|ACV00918.1| exsB protein [Cyanothece sp. PCC 8802]
          Length = 225

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + VV +SGG+DS+  AA+    GY +I ++L+                 +++  A+ 
Sbjct: 3  HQSKAVVLLSGGLDSATSAAIALSQGYHLIALSLRY-----------GQRHEKELAAAKN 51

Query: 79 VCDTINV-SHYVFD 91
          +   +++  HY+ +
Sbjct: 52 IAKALDITEHYIVE 65


>gi|218246824|ref|YP_002372195.1| exsB protein [Cyanothece sp. PCC 8801]
 gi|218167302|gb|ACK66039.1| exsB protein [Cyanothece sp. PCC 8801]
          Length = 225

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + VV +SGG+DS+  AA+    GY +I ++L+                 +++  A+ 
Sbjct: 3  HQSKAVVLLSGGLDSATSAAIALSQGYHLIALSLRY-----------GQRHEKELAAAKN 51

Query: 79 VCDTINV-SHYVFD 91
          +   +++  HY+ +
Sbjct: 52 IAKALDITEHYIVE 65


>gi|313680118|ref|YP_004057857.1| thiamine biosynthesis/tRNA modification protein thii [Oceanithermus
           profundus DSM 14977]
 gi|313152833|gb|ADR36684.1| thiamine biosynthesis/tRNA modification protein ThiI [Oceanithermus
           profundus DSM 14977]
          Length = 388

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 59/207 (28%), Gaps = 34/207 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGG+DS V A  + + G   + V    Y        + +    + +        
Sbjct: 176 KVVVLISGGIDSPVAAWRMAKRGARPVYVHFHSYPHTSLDSLRKTVAELEVLARWHGPAR 235

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 YV    +  +  +       Y             R   +        + GA  L
Sbjct: 236 -----LYVVPLADV-QEEIFAHSPERYR--------TLLYRRFMYRIAERAAEREGAGAL 281

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG  +        +                    L A  +     +  PL  M K  V 
Sbjct: 282 VTGDALGQVASQTLEN-------------------LHAVERAVAMTVLRPLIGMDKTEVI 322

Query: 202 DLAREMGLDIADKSDSQDIC-FVQQGK 227
             A+ +G         QD C F++  +
Sbjct: 323 AEAQRIGTYEISIQPQQDCCSFLEPKR 349


>gi|299783606|gb|ADJ41604.1| GMP synthase (Glutamine-hydrolyzing) [Lactobacillus fermentum CECT
           5716]
          Length = 517

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           + +   +   ++ +   D +V++ +SGGVDSSV A L+ +     IG  +T    +    
Sbjct: 205 MDDFIDMQVDEISQTVGDKKVILGLSGGVDSSVTAVLIHKA----IGDQLTCIFVDHGLL 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +          D       + V+    D  +RF              G +  P    
Sbjct: 261 RKNEADSVMKALSAD-------LGVNIIKVDAADRFLGK---------LKGISD-PEQKR 303

Query: 121 NRTVK--FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
               K   +      +++  AD LA G      +  G D  +     +           +
Sbjct: 304 KTIGKEFVAVFDEEAKKMKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN-------V 353

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++    L  PL  + K+  R L  ++G+ 
Sbjct: 354 GGLPEKMGFKLIEPLRSLFKDETRQLGEKLGIP 386


>gi|254505605|ref|ZP_05117751.1| argininosuccinate synthase [Vibrio parahaemolyticus 16]
 gi|219551258|gb|EED28237.1| argininosuccinate synthase [Vibrio parahaemolyticus 16]
          Length = 404

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 17/171 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             ++   SGG+DSS V  LLK     V  V + L +  + S               + + 
Sbjct: 18  KHILTLFSGGLDSSYVLELLKNSHAKVTAVAVDLGDGIEESNL-------------KLIT 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           D       + D ++ F    +V    + +      P     +R +     + +   LG D
Sbjct: 65  DHYGFDLKIIDAKQEFVEHSLVSAIQAQSMYLGDYPVSSSLSRPIIVKKAVELAEILGCD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +              +G   R      D      Y   A T+++     F
Sbjct: 125 AIIHTANQSQNSLRRLNGAIER---SGFDGFYGSPYEYSALTREEKAKALF 172


>gi|227830474|ref|YP_002832254.1| argininosuccinate synthase [Sulfolobus islandicus L.S.2.15]
 gi|229579286|ref|YP_002837684.1| argininosuccinate synthase [Sulfolobus islandicus Y.G.57.14]
 gi|229581953|ref|YP_002840352.1| argininosuccinate synthase [Sulfolobus islandicus Y.N.15.51]
 gi|284997968|ref|YP_003419735.1| Argininosuccinate synthase [Sulfolobus islandicus L.D.8.5]
 gi|227456922|gb|ACP35609.1| Argininosuccinate synthase [Sulfolobus islandicus L.S.2.15]
 gi|228010000|gb|ACP45762.1| Argininosuccinate synthase [Sulfolobus islandicus Y.G.57.14]
 gi|228012669|gb|ACP48430.1| Argininosuccinate synthase [Sulfolobus islandicus Y.N.15.51]
 gi|284445863|gb|ADB87365.1| Argininosuccinate synthase [Sulfolobus islandicus L.D.8.5]
 gi|323474832|gb|ADX85438.1| Argininosuccinate synthase [Sulfolobus islandicus REY15A]
          Length = 406

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 50/232 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +M++V+A SGG+D++V    LK     +VI VT+ +       K +              
Sbjct: 15  EMKIVLAYSGGLDTTVSIRWLKETFKAEVITVTVDVGQKDDFKKIEERAYIAGASK---- 70

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                   HY  D  + F N  I          E   P      R +    ++ V ++  
Sbjct: 71  --------HYTIDAIKEFANNYISYAIKLNGLYEGVYPLSTALARPLIAEKVVEVAKKEK 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP--LGD 194
           AD +A G                           DQ  F            +  P  +  
Sbjct: 123 ADAVAHG---------------------STSKGNDQVRFDLTVKALYPDVKIIAPARIWS 161

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           M +E     A+E G+ I           V+  KY   +     G ++EGDI+
Sbjct: 162 MTREDEIKYAKEKGIPIK----------VESSKYS--IDENLWGRSIEGDII 201


>gi|121594885|ref|YP_986781.1| GMP synthase [Acidovorax sp. JS42]
 gi|120606965|gb|ABM42705.1| GMP synthase (glutamine-hydrolyzing) [Acidovorax sp. JS42]
          Length = 538

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 26/193 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGD-----MVMD--MFAG 278

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  + F   +             G   +          F       +  G 
Sbjct: 279 KLHAKVVRVDASDLFLGELAGVSEPEQKRKIIGRLFVDV--------FKAEAEKLKASGQ 330

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
                    +  +Y            + + ++   +  +     +QL   L  PL D+ K
Sbjct: 331 GHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN--VGGLP-EQLGLKLLEPLRDLFK 387

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 388 DEVRELGVALGLP 400


>gi|323477572|gb|ADX82810.1| Argininosuccinate synthase [Sulfolobus islandicus HVE10/4]
          Length = 406

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 50/232 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +M++V+A SGG+D++V    LK     +VI VT+ +       K +              
Sbjct: 15  EMKIVLAYSGGLDTTVSIRWLKETFKAEVITVTVDVGQKDDFKKIEERAYIAGASK---- 70

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                   HY  D  + F N  I          E   P      R +    ++ V ++  
Sbjct: 71  --------HYTIDVIKEFANNYISYAIKLNGLYEGVYPLSTALARPLIAEKVVEVAKKEK 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP--LGD 194
           AD +A G                           DQ  F            +  P  +  
Sbjct: 123 ADAVAHG---------------------STSKGNDQVRFDLTVKALYPDVKIIAPARIWS 161

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           M +E     A+E G+ I           V+  KY   +     G ++EGDI+
Sbjct: 162 MTREDEIKYAKEKGIPIK----------VESSKYS--IDENLWGRSIEGDII 201


>gi|313158300|gb|EFR57702.1| putative argininosuccinate synthase [Alistipes sp. HGB5]
          Length = 400

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VV+A SGG+D+S     L +  GYDV      + N+   SK + +          R
Sbjct: 2   EKKKVVLAFSGGLDTSFCVKYLSEEKGYDV---YTAIANTGGFSKEELANIEK------R 52

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFA--SSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            V   +  V H   D E+ +    I           G  P+  V   R  +   ++   +
Sbjct: 53  AVA--LGAVRHATLDIEQEYYEKSIKYMVFGDILRNGTYPIS-VSSERIFQAIAIIEYAK 109

Query: 135 QLGADVLATG 144
            +GAD +A G
Sbjct: 110 SIGADCVAHG 119


>gi|229492732|ref|ZP_04386533.1| argininosuccinate synthase [Rhodococcus erythropolis SK121]
 gi|229320391|gb|EEN86211.1| argininosuccinate synthase [Rhodococcus erythropolis SK121]
          Length = 399

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGAEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F +   +P  ++ A      P V   +R +    ++   R  G 
Sbjct: 52  IDCGAVESVVVDARDEFADEYCLPTIAANALYMDRYPLVSAISRPLIVKHIVEAARSHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            +++ G                    +  D  R +  F       Q   +  P+ D    
Sbjct: 112 TIVSHG-----------------CTGKGNDQVRFEVGFGALAPDLQ---VIAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENNIPINVSKKS 172


>gi|171779380|ref|ZP_02920344.1| hypothetical protein STRINF_01225 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281997|gb|EDT47428.1| hypothetical protein STRINF_01225 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 32/211 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     L   ++ +   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDLQINEIRQKVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 +  
Sbjct: 264 RKGEGDQVMN-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRK------IIG 310

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V  S      R+L G D LA G      +  G D  +     +           +  
Sbjct: 311 NEFV--SVFDDEARKLKGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGG 358

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +L  PL  + K+ VR L   + + 
Sbjct: 359 LPEDMQFELIEPLNTLFKDEVRALGTALDMP 389


>gi|254168882|ref|ZP_04875722.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
 gi|197622146|gb|EDY34721.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
          Length = 312

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 36/204 (17%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KN    + ++A SGGVDS+V A L+ +           + ++  A           +  +
Sbjct: 16  KNEIRGKAIIACSGGVDSTVAAVLVHKA----------INDNLLAIFVDTGFMRKNEAEE 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSV 132
              +   + +++ + D    F  A+              +   +  R +   KF ++   
Sbjct: 66  IDGLFSRMGLNYKIVDASREFIEALKG------------VEDPEKKRKIIGAKFIEVFER 113

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + GA+ L  G      +   + G   R   +           +    ++    L  P
Sbjct: 114 EAEEFGAEYLVQGTIAPDWI---ESGGGLRDTIKSHHN-------VGGLPEKMNLKLVEP 163

Query: 192 LGDMKKESVRDLAREMGLDIADKS 215
           L ++ K+ VR++AR   L+I ++ 
Sbjct: 164 LRELYKDEVREIARFFNLEIKERQ 187


>gi|149376768|ref|ZP_01894525.1| Argininosuccinate synthase [Marinobacter algicola DG893]
 gi|149358889|gb|EDM47356.1| Argininosuccinate synthase [Marinobacter algicola DG893]
          Length = 403

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVRWLQDT-YECEVVTF-----------TADIGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G          R +    L+ +
Sbjct: 53  KALGVKEIYIEDLREEFVRDYVFPMFRANTIYEGEYLLG------TSIARPLISRRLIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|268601288|ref|ZP_06135455.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
 gi|268585419|gb|EEZ50095.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
          Length = 436

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPR 64

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  R  CD + V           +  V        AA              +++ 
Sbjct: 65  ADDWADFCRNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 109 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 157

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 158 IWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|226310118|ref|YP_002770012.1| GMP synthase [Brevibacillus brevis NBRC 100599]
 gi|226093066|dbj|BAH41508.1| GMP synthase [Brevibacillus brevis NBRC 100599]
          Length = 513

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 67/199 (33%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVAAL+ +     IG  L          R+G          A  V
Sbjct: 218 NKQVLCALSGGVDSSVVAALIHKA----IGDQLTCMFVDHGLLRQGE---------AEGV 264

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLLS 131
            +T           E+F   VI       F S       P     +  N  +  F +   
Sbjct: 265 METFG---------EKFSMKVIKIDARERFMSKLKGVSDPEQKRKIIGNEFIYVFDE--E 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +    D LA G        + + G       +           +    +     L  P
Sbjct: 314 AAKLTDMDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMKFTLIEP 363

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+GL 
Sbjct: 364 LKALFKDEVRKLGTELGLP 382


>gi|222153042|ref|YP_002562219.1| GMP synthase [Streptococcus uberis 0140J]
 gi|254800119|sp|B9DUB2|GUAA_STRU0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222113855|emb|CAR41980.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus uberis 0140J]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMQIEKIRETVGDKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D ++RF   +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDAKDRFLELLAGVDDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +     L  PL  + K+ VR+L   +G+ 
Sbjct: 360 PEDMQFQLIEPLNTLFKDEVRELGIALGMP 389


>gi|154503546|ref|ZP_02040606.1| hypothetical protein RUMGNA_01370 [Ruminococcus gnavus ATCC 29149]
 gi|153795646|gb|EDN78066.1| hypothetical protein RUMGNA_01370 [Ruminococcus gnavus ATCC 29149]
          Length = 515

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         +   
Sbjct: 216 DGKVLCALSGGVDSSVAAVMLSKAIGNQLTCVF---VDHGLLRKNEGDEVEAIFGPEG-- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + ++RF   +                 +     ++        +++G 
Sbjct: 271 ---DYDLNFIRVNAQQRFYEKLAGVTEPEQKRK------IIGEEFIRV--FEEEAKKIGT 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G+          + +               ++  PL D+ K
Sbjct: 320 VDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPLRDLFK 371

Query: 198 ESVRDLAREMGLD 210
           + VR    E+GL 
Sbjct: 372 DEVRKAGLELGLP 384


>gi|20093543|ref|NP_613390.1| asparagine synthase (glutamine-hydrolyzing) [Methanopyrus kandleri
           AV19]
 gi|19886384|gb|AAM01320.1| Asparagine synthase (glutamine-hydrolyzing) [Methanopyrus kandleri
           AV19]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 100/284 (35%), Gaps = 49/284 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV V +SGGVDSS VA L     Y DV     + Y +              DV  A R+C
Sbjct: 222 RVGVVLSGGVDSSTVAKLASE--YVDV-----KCYAAGFEGS--------DDVEVAERLC 266

Query: 81  DTINVSHYVFDYEERFRNAVIV--PFASSY--AAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           D +         E+ F   V+       ++     E  +P + C   +    +  +    
Sbjct: 267 DEMGWPFVSVSLEDEFERYVVATVYAVETWNPMKVEVGIPILACAGAMSDDGIRVMLSGQ 326

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCR------PMDLERDQSYFLFA-----TTQQQL 185
           GAD L  G++   R Y   D +    + +       ++LERD    +            L
Sbjct: 327 GADELLGGYHRHLRHYGDWD-RFSWELWKDVAAIHAVNLERDDKAGMHHSVELRVPYLDL 385

Query: 186 CDLRFPLG------------DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
             +R  LG            +++K ++R +A E+GL        +     +  +Y  +  
Sbjct: 386 DVVRTGLGIDPRENVSGPEDNLRKRALRRVAAELGLPDFVVERRK-----RATQYGSLTS 440

Query: 234 RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
           ++   +  E  I     + LG  +    +     + LG     P
Sbjct: 441 KMLDKLVRELGIKRAVAKRLGYRSHKELFLRLVGKYLGFPWEAP 484


>gi|222110464|ref|YP_002552728.1| gmp synthase [Acidovorax ebreus TPSY]
 gi|221729908|gb|ACM32728.1| GMP synthase, large subunit [Acidovorax ebreus TPSY]
          Length = 538

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 26/193 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G       V D      
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGD-----MVMD--MFAG 278

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++      D  + F   +             G   +          F       +  G 
Sbjct: 279 KLHAKVVRVDASDLFLGELAGVSEPEQKRKIIGRLFVDV--------FKAEAEKLKASGQ 330

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMKK 197
                    +  +Y            + + ++   +  +     +QL   L  PL D+ K
Sbjct: 331 GHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN--VGGLP-EQLGLKLLEPLRDLFK 387

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 388 DEVRELGVALGLP 400


>gi|242020998|ref|XP_002430934.1| asparagine synthetase, putative [Pediculus humanus corporis]
 gi|212516152|gb|EEB18196.1| asparagine synthetase, putative [Pediculus humanus corporis]
          Length = 562

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 47/147 (31%), Gaps = 41/147 (27%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D R+   +SGG+DSS+VAALL +               +  S   G      D+  AR+
Sbjct: 248 SDRRIGCMLSGGLDSSLVAALLVKAAKK------HNIPYKIQSFSIGM-GNSPDILAARQ 300

Query: 79  VCDTINVSHYVFDYEERFRNAVIV--------------------PFASSYAAGETPLPCV 118
           V   I   H+   + E   + V+                        S Y   +T    +
Sbjct: 301 VAKHIGTEHHEVIFTEEDVSKVLDKVIHTLETPDITTIRASVGMYILSKYIKEKTDSTVI 360

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGH 145
                             GAD +A G+
Sbjct: 361 FSGE--------------GADEIAQGY 373


>gi|328772493|gb|EGF82531.1| hypothetical protein BATDEDRAFT_9716 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 417

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +       +V++A SGG+D+S + A L   GY+VI   +                  +D 
Sbjct: 1   MTGTASKGKVLLAYSGGLDTSCILAWLIEQGYEVIA-YIANI------------GQEEDF 47

Query: 74  YDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVK 125
             AR     I     ++ D  + F   +I P   +       Y  G +    V   + + 
Sbjct: 48  EVARLKALKIGATKVFIEDLRKEFVEDLIWPAVQANLLYEGVYLLGTSLARPVIARKQI- 106

Query: 126 FSDLLSVTRQLGADVLATG 144
                 +  + G   L+ G
Sbjct: 107 -----EIAAREGCKYLSHG 120


>gi|323489888|ref|ZP_08095111.1| GMP synthase (glutamine-hydrolyzing) [Planococcus donghaensis
           MPA1U2]
 gi|323396457|gb|EGA89280.1| GMP synthase (glutamine-hydrolyzing) [Planococcus donghaensis
           MPA1U2]
          Length = 512

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 65/199 (32%), Gaps = 42/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVA L+ +     IG  L          RKG          A  V
Sbjct: 217 DKKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHGLLRKGE---------AESV 263

Query: 80  ----CDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                D  N++    D  +RF      V  P              +  N  +        
Sbjct: 264 MKTFADGFNMNVIKIDARDRFMSKLEGVTDP---------EKKRKIIGNEFIYV--FDDE 312

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +L G D LA G        + + G       +           +          L  P
Sbjct: 313 ASKLEGMDFLAQG---TLYTDIIESGTTTAQTIKSHHN-------VGGLPDDMQFKLIEP 362

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR L  E+G+ 
Sbjct: 363 LNTLFKDEVRVLGTELGMP 381


>gi|238926157|ref|ZP_04657917.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas flueggei ATCC
           43531]
 gi|238885837|gb|EEQ49475.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas flueggei ATCC
           43531]
          Length = 529

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 29/211 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +    +    +L +     R + A+SGGVDSSV A LL +  G  +  V     +     
Sbjct: 214 MDSFVQTAIEELRQKIGRGRALCALSGGVDSSVAAVLLSKAIGSQLTCVF---VDHGLLR 270

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           K +G         D        +V+    +  +RF   +                 +   
Sbjct: 271 KNEGDEVEAVFGRDG-----VYDVNFIRINARDRFYARLKGVTEPEQKRK------IIGE 319

Query: 122 RTVKFSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
             ++         ++GA D L  G        V + G  +  + +           +   
Sbjct: 320 EFIRV--FEEAAHEIGAVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGL 367

Query: 181 TQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                  ++  PL  + K+ VR   RE+G+ 
Sbjct: 368 PDHVDFKEIVEPLRLLFKDEVRAAGRELGIP 398


>gi|161833723|ref|YP_001597919.1| putative argininosuccinate synthase (argG)/acetyltransferase
           activity of N-acetylglutamate synthase (argA)
           [Candidatus Sulcia muelleri GWSS]
 gi|152206213|gb|ABS30523.1| putative argininosuccinate synthase (argG)/acetyltransferase
           activity of N-acetylglutamate synthase (argA)
           [Candidatus Sulcia muelleri GWSS]
          Length = 580

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 27/136 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVI------GVTLQLYNSRKASKRKGSCCAGQ 71
            K  ++++A SGG+D+S     L  +GY VI      GV                    +
Sbjct: 185 NKGDKILLAYSGGLDTSYCLKYLTNEGYKVITIIINTGVF-----------------NNK 227

Query: 72  DVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           D+    +    I  +SHY  + +E F    I              P    +    F  +L
Sbjct: 228 DLESIEKRALNIGAISHYSINAKEYFYYKCIKYLVYGNILKNNTYPLSVSSERF-FQAIL 286

Query: 131 --SVTRQLGADVLATG 144
                + L    ++ G
Sbjct: 287 IAEFAKNLKVKAISHG 302


>gi|330445254|ref|ZP_08308906.1| guaA GMP synthetase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489445|dbj|GAA03403.1| guaA GMP synthetase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 527

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 71/214 (33%), Gaps = 69/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYNSR------ 58
           D  V++ +SGGVDSSVVA L+ R  G  +  V               + ++  +      
Sbjct: 229 DDEVILGLSGGVDSSVVAMLIHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFGDKFGLNIV 288

Query: 59  --KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             +A +R  S  AG D  +A+R    I    +V  + + F         + + A  T  P
Sbjct: 289 HVQAEERFLSALAGIDDPEAKR--KKIG---HV--FVDVFDEESKKLSNAKWLAQGTIYP 341

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V  +   K                   H I+S   VG                      
Sbjct: 342 DVIESAASKTGK---------------AHVIKSHHNVG---------------------- 364

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                      L  PL ++ K+ VR +  E+GL 
Sbjct: 365 --GLPDDMEMGLVEPLKELFKDEVRKIGLELGLP 396


>gi|227827764|ref|YP_002829544.1| argininosuccinate synthase [Sulfolobus islandicus M.14.25]
 gi|229585035|ref|YP_002843537.1| argininosuccinate synthase [Sulfolobus islandicus M.16.27]
 gi|238619936|ref|YP_002914762.1| argininosuccinate synthase [Sulfolobus islandicus M.16.4]
 gi|227459560|gb|ACP38246.1| Argininosuccinate synthase [Sulfolobus islandicus M.14.25]
 gi|228020085|gb|ACP55492.1| Argininosuccinate synthase [Sulfolobus islandicus M.16.27]
 gi|238381006|gb|ACR42094.1| Argininosuccinate synthase [Sulfolobus islandicus M.16.4]
          Length = 406

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 50/232 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +M++V+A SGG+D++V    LK     +VI VT+ +       K +              
Sbjct: 15  EMKIVLAYSGGLDTTVSIRWLKETFKAEVITVTVDVGQKDDFKKIEERAYIAGASK---- 70

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                   HY  D  + F N  I          E   P      R +    ++ V ++  
Sbjct: 71  --------HYTIDAIKEFANNYISYAIKLNGLYEGVYPLSTALARPLIAEKVVEVAKKEK 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP--LGD 194
           AD +A G                           DQ  F            +  P  +  
Sbjct: 123 ADAVAHG---------------------STSKGNDQVRFDLTVKALYPDVKIIAPARIWS 161

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           M +E     A+E G+ I           V+  KY   +     G ++EGDI+
Sbjct: 162 MTREDEIKYAKEKGIPIK----------VESSKYS--IDENLWGRSIEGDII 201


>gi|197302721|ref|ZP_03167775.1| hypothetical protein RUMLAC_01451 [Ruminococcus lactaris ATCC
           29176]
 gi|197298303|gb|EDY32849.1| hypothetical protein RUMLAC_01451 [Ruminococcus lactaris ATCC
           29176]
          Length = 515

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RV++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 209 EIREKVGDGRVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEAV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
                +      +++    + +ER+ N           AG T  P  +  R +       
Sbjct: 266 FGPKGQ-----FDLNFIRVNAQERYYNK---------LAGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++GA D LA G      +  G  G+          + +               
Sbjct: 309 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFK 360

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL D+ K+ VR    E+GL 
Sbjct: 361 EIIEPLRDLFKDEVRKAGLELGLP 384


>gi|323703499|ref|ZP_08115145.1| argininosuccinate synthase [Desulfotomaculum nigrificans DSM 574]
 gi|323531490|gb|EGB21383.1| argininosuccinate synthase [Desulfotomaculum nigrificans DSM 574]
          Length = 401

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 69/210 (32%), Gaps = 55/210 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++ A LK + GYDVI +T        A   +G   A  +    +   
Sbjct: 3   KVVLAYSGGLDTSIIIAWLKENYGYDVIALT--------ADLGQGEELAPLEEKAIKSGA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
             I    Y+ D  + F    I P           Y  G +        R +    L+ + 
Sbjct: 55  SKI----YIEDLRKEFVEDYIFPTLKAGAIYEGKYLLGTSFA------RPLIAKKLVEIA 104

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRF 190
            + GA  +A G                           DQ  F      + L     +  
Sbjct: 105 EKEGAVAVAHG---------------------ATGKGNDQVRF--ELGVKALAPHLKVIA 141

Query: 191 PLGDM---KKESVRDLAREMGLDIADKSDS 217
           P  +     +E   D A   G+ +     S
Sbjct: 142 PWREWDIRSREDAIDYAEARGIPVPVTKKS 171


>gi|256811396|ref|YP_003128765.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
 gi|256794596|gb|ACV25265.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
          Length = 296

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 23/132 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            KD +++VA+SGG D    A +LK+ GY++  +       +  S+          +   +
Sbjct: 46  NKDEKILVAVSGGKDGHAAAWVLKKLGYNIE-LFHINLGIKDFSEIS--------LETVK 96

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQ 135
           ++ + + V  +V +        +          G+    C    R +  KF        +
Sbjct: 97  KLAEKLEVPLHVVNL-----KDITGKTMEDVR-GKKCSICGTTKRYLMNKFGY------E 144

Query: 136 LGADVLATGHYI 147
            G DV+ TGH +
Sbjct: 145 NGFDVIVTGHNL 156


>gi|315122791|ref|YP_004063280.1| argininosuccinate synthase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496193|gb|ADR52792.1| argininosuccinate synthase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 408

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + KN K  +VV+A SGG+D+S++   L+   G +V+ V +         +   + C    
Sbjct: 1   MSKNIK--KVVLAYSGGLDTSIILKWLQVEKGLEVV-VFIA---DLGQGEELTAACDKAK 54

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV----KFSD 128
           +  A+ V        YV D    F    + P   + A  E    C      +        
Sbjct: 55  LLGAKEV--------YVKDLRREFVRDFVFPMFRANALYEG---CYLLGTAIARPLISKY 103

Query: 129 LLSVTRQLGADVLATG 144
           L+ + R+ GAD +A G
Sbjct: 104 LVDIARETGADAVAHG 119


>gi|297569716|ref|YP_003691060.1| NAD+ synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925631|gb|ADH86441.1| NAD+ synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 336

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 75/217 (34%), Gaps = 45/217 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           VVVA+SGGVDSSV AAL  R    G  V G+ L     R +S           +   ++V
Sbjct: 39  VVVALSGGVDSSVCAALAVRALGAG-KVYGLML---PERDSS--------PLSLKRGKQV 86

Query: 80  CDTINVSHYVFDYEERF--------RNAVIVPFASSYAAGETPLPCVDCNRTVKF----- 126
            D + + + V D             R+  I      Y  G      +   R   F     
Sbjct: 87  ADCLGIDYLVEDIGPTLDSLGCYLRRDEAIRRLFPEYGPGWKSKIAIAGGRDGSFNYFNL 146

Query: 127 ------SDLLSVTRQLGADVL----ATGHYIRSRLYVG---DDGKRRRIMCRPMDLERDQ 173
                  +LL   R    + L    AT    R+R  +     D     ++  P  LE DQ
Sbjct: 147 VVQTPGGELLEK-RMPPREYLQIVAATNFKQRTRKMIEYFHADRLNYAVIGTPNRLEYDQ 205

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +F+             P+  + K  V  LA  + + 
Sbjct: 206 GFFVKNGDG---AADLKPIAHLYKTQVYALASHLRIP 239


>gi|238917726|ref|YP_002931243.1| GMP synthase (glutamine-hydrolysing) [Eubacterium eligens ATCC
           27750]
 gi|259647681|sp|C4Z3X1|GUAA_EUBE2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|238873086|gb|ACR72796.1| GMP synthase (glutamine-hydrolysing) [Eubacterium eligens ATCC
           27750]
          Length = 524

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 42/199 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGGVDSSV A LL R  G  +  V     +     K +G      +V       
Sbjct: 217 KVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGD-----EVESVFGPE 268

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
              +++    + +ER+ +           AG T  P  +  R +             +++
Sbjct: 269 GQFDLNFIRVNAQERYYSK---------LAGVT-EP--EAKRKIIGEEFIRVFEEEAKKI 316

Query: 137 GA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           GA D LA G      +  G  G+    +       +    D              ++  P
Sbjct: 317 GAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD------------FKEIIEP 364

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR    E+G+ 
Sbjct: 365 LRNLFKDEVRKAGLELGIP 383


>gi|330835407|ref|YP_004410135.1| exsB protein [Metallosphaera cuprina Ar-4]
 gi|329567546|gb|AEB95651.1| exsB protein [Metallosphaera cuprina Ar-4]
          Length = 462

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 48/229 (20%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           VS      +L L   PK   +V+A SGG+DS+V A  + +DGY V  +    ++  +  +
Sbjct: 224 VSNKKEFRTLSLYDKPKRRALVIA-SGGLDSTVAATKMVKDGYQVTLLHFNYHHKAEERE 282

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR------------NAVIVP------- 103
           R+ +          R++   +NV     +  + F               V          
Sbjct: 283 REAT----------RKIASYLNVDLIEVN-TDVFTLIGESPLLKAGGEIVKERKGEEGAE 331

Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
           FA  +              ++ F+  +++    G D L +G  +       D+      M
Sbjct: 332 FAHEWVPARN---------SIFFTVAMAIAEARGYDTLVSGINLEEAGAYPDNEMEFVRM 382

Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
                    Q    +A    +  D+  P+G++ K  +  L  ++G  + 
Sbjct: 383 F--------QRLSPYAVGPNKRVDIVMPVGNLVKHEIVKLGLDIGAPLH 423


>gi|323351585|ref|ZP_08087239.1| GMP synthase [Streptococcus sanguinis VMC66]
 gi|322122071|gb|EFX93797.1| GMP synthase [Streptococcus sanguinis VMC66]
 gi|324991167|gb|EGC23101.1| GMP synthase [Streptococcus sanguinis SK353]
 gi|325687446|gb|EGD29467.1| GMP synthase [Streptococcus sanguinis SK72]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGNQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|227548147|ref|ZP_03978196.1| argininosuccinate synthase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079809|gb|EEI17772.1| argininosuccinate synthase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 400

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L    G +VI V L L    +    +       D   A  + 
Sbjct: 4   RVVLAYSGGLDTSVAIPYLGEMIGGEVIAVALDLGQGGE--DMESVRQRALDCGAAESI- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D ++ F     +P   +        P V   +R +    L+   +Q G  
Sbjct: 61  --------VIDAKDEFAEEYCLPTIKANGLYMNEYPLVSAISRPLIVKHLVEAAQQHGGT 112

Query: 140 VLATG 144
            +A G
Sbjct: 113 HVAHG 117


>gi|187928397|ref|YP_001898884.1| GMP synthase [Ralstonia pickettii 12J]
 gi|254800110|sp|B2UBD1|GUAA_RALPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187725287|gb|ACD26452.1| GMP synthase, large subunit [Ralstonia pickettii 12J]
          Length = 539

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                   G+ V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF--------VDHGLLRLDEGKMVMD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 275 RLHAKVVHVDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|223940664|ref|ZP_03632505.1| ExsB family protein [bacterium Ellin514]
 gi|223890676|gb|EEF57196.1| ExsB family protein [bacterium Ellin514]
          Length = 275

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 83/236 (35%), Gaps = 50/236 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS     L K    DV+G          A+         +++ +A  +    
Sbjct: 20  LVAYSGGVDS---VFLAKVAK-DVLG------KKSLAAIADSPSLPRRELEEALEIARRF 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +   +    + F N       SSY A      C  C   + F++L  + +     V+A 
Sbjct: 70  EIPVRIV-RTKEFDN-------SSYLANPN-NRCYFCKHEL-FTELEPLAKAEQFAVIAY 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G          D G  R       +                   +R PL +  + K  +R
Sbjct: 120 GENAS------DVGDFRPGAKAAAEF-----------------QVRAPLKEAGLTKAEIR 156

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
           +L+  +GL  ADK   Q  C   +  Y + V      +  E +++  +   LG H+
Sbjct: 157 ELSSYLGLPTADKP--QMACLSSRIPYGEAVSPQKLLMIEEAEMLLRD---LGFHD 207


>gi|332018385|gb|EGI58979.1| Asparagine synthetase [Acromyrmex echinatior]
          Length = 571

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D R+   +SGG+DSS+VAALL +   +           +  S   G      D+  AR+V
Sbjct: 247 DRRIGCLLSGGLDSSLVAALLVKQAKEC------NLKYKIQSFAIGM-GDSPDIIAARQV 299

Query: 80  CDTINVSHYVFDYEERFRNAVIV---PFASSY 108
            + I   H+   + ++    V+        +Y
Sbjct: 300 AEYIGTEHHEIIFTQQDVINVLDNVIYSLETY 331


>gi|315453397|ref|YP_004073667.1| NH(3)-dependent NAD(+) synthetase [Helicobacter felis ATCC 49179]
 gi|315132449|emb|CBY83077.1| NH(3)-dependent NAD(+) synthetase [Helicobacter felis ATCC 49179]
          Length = 248

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 53/216 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R VV MSGGVDS++V  L +R    V+            +    +        DA  +C
Sbjct: 22  KRFVVGMSGGVDSALVGVLCQR----VL---------PTHALLMPAIHPSSATEDAILLC 68

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  ++ +    +  YE  F+           + G     C      ++ + L   + ++G
Sbjct: 69  ERFSIPYTQRPIAPYEALFKEQ-----NPHVSLGRLGNFC----ARMRMNLLYDFSMEIG 119

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A            L VG   K   ++              + T    L  L  P+  + K
Sbjct: 120 A------------LVVGTSNKSEIML-------------GYGTLFGDLAWLINPIAHLFK 154

Query: 198 ESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDV 231
             V  LA+E+ +   I +K+ S D+ F  Q    D+
Sbjct: 155 SQVYSLAQELDIPKNILNKAPSADL-FSGQSDEADL 189


>gi|225872762|ref|YP_002754219.1| GMP synthase [Acidobacterium capsulatum ATCC 51196]
 gi|225792783|gb|ACO32873.1| GMP synthase [Acidobacterium capsulatum ATCC 51196]
          Length = 516

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 32/193 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + A+SGGVDSSV A L+ R  G  +  V +     R     K            + +   
Sbjct: 219 ICALSGGVDSSVAAVLVHRAIGDQLTCVFVDNGVLRLNEFEKVQ----------QNLRGK 268

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-----G 137
           + ++    D  +RF + +                 +  N  +  +       ++     G
Sbjct: 269 LGLNLVAVDASKRFLDKLAGVTDPEAKRK------IIGNEFI--AVFDDEAHRIAQQTGG 320

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G  +   +      K      +           +    +     L  PL D+ K
Sbjct: 321 VDWLVQG-TLYPDVIESSSVKGPSQTIKSHHN-------VGGLPEDMKLKLIEPLRDLFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR +  ++G+ 
Sbjct: 373 DEVRRIGADLGMP 385


>gi|260589941|ref|ZP_05855854.1| GMP synthase [Blautia hansenii DSM 20583]
 gi|260539748|gb|EEX20317.1| GMP synthase [Blautia hansenii DSM 20583]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 26/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   + +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G       
Sbjct: 215 IRKKVGNGKVLCALSGGVDSSVAAVMLSKAVGNQLTCVF---VDHGLLRKDEGDEVEAVF 271

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +      +++    + +ERF   +                 +     ++       
Sbjct: 272 GPNGQ-----YDLNFIRVNAQERFYAKLKG--VEEPEEKRK----IIGEEFIRV--FEEE 318

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +++GA D L  G      +  G  G+          + +               ++  P
Sbjct: 319 AKKIGAVDFLVQGTIYPDVVESGVGGE--------STVIKSHHNVGGLPDYVDFKEIIEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR    E+G+ 
Sbjct: 371 LRDLFKDEVRKAGLELGIP 389


>gi|149641234|ref|XP_001512299.1| PREDICTED: similar to guanosine 5-monophosphate synthetase, partial
           [Ornithorhynchus anatinus]
          Length = 631

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 65/213 (30%), Gaps = 45/213 (21%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 176 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 224

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 225 LK---KLGIRVKVVNAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 279

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQ 183
              + +  +     +     ++        G  R  +     L    + +         +
Sbjct: 280 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAEVIKTHHNDTE 334

Query: 184 QLCDL------RFPLGDMKKESVRDLAREMGLD 210
            +  L        PL D  K+ VR L RE+GL 
Sbjct: 335 LIRKLREEGKVIEPLKDFHKDEVRVLGRELGLP 367


>gi|55820926|ref|YP_139368.1| GMP synthase [Streptococcus thermophilus LMG 18311]
 gi|81560671|sp|Q5M4P4|GUAA_STRT2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|55736911|gb|AAV60553.1| GMP synthase [Streptococcus thermophilus LMG 18311]
          Length = 527

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           ++    +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 215 MANFVDMQIAQIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 270

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 V  
Sbjct: 271 RKGEGDQVME-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVHV 323

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 324 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 366

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 367 PEDMQFELIEPLNTLFKDEVRALGTELGMP 396


>gi|69247087|ref|ZP_00604219.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
 gi|257881344|ref|ZP_05660997.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257890562|ref|ZP_05670215.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260558263|ref|ZP_05830459.1| GMP synthase [Enterococcus faecium C68]
 gi|293562922|ref|ZP_06677389.1| GMP synthase [Enterococcus faecium E1162]
 gi|294623793|ref|ZP_06702621.1| GMP synthase [Enterococcus faecium U0317]
 gi|68194971|gb|EAN09438.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
 gi|257817002|gb|EEV44330.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257826922|gb|EEV53548.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260075437|gb|EEW63743.1| GMP synthase [Enterococcus faecium C68]
 gi|291596747|gb|EFF27970.1| GMP synthase [Enterococcus faecium U0317]
 gi|291605048|gb|EFF34515.1| GMP synthase [Enterococcus faecium E1162]
          Length = 521

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 205 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 252

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    +  +RF + +                 
Sbjct: 253 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVNARDRFLDKLKGVSDPEQKRKIIGNEF 311

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 312 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 356

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 390


>gi|314947948|ref|ZP_07851352.1| GMP synthase protein [Enterococcus faecium TX0082]
 gi|313645546|gb|EFS10126.1| GMP synthase protein [Enterococcus faecium TX0082]
          Length = 515

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 199 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 246

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    +  +RF + +                 
Sbjct: 247 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVNARDRFLDKLKGVSDPEQKRKIIGNEF 305

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 306 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 350

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 351 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 384


>gi|300722900|ref|YP_003712196.1| GMP synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629413|emb|CBJ90014.1| GMP synthetase (glutamine aminotransferase) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 525

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 72/214 (33%), Gaps = 69/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSR--------------- 58
           D +V++A+SGGVDSSV A LL R  G  +  V      L+L  +                
Sbjct: 227 DDQVILALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRLNEADQVMEMFEGKFDLNII 286

Query: 59  --KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             KA  R  S  AG D  +A+R   TI    +V  + + F           + A  T  P
Sbjct: 287 HVKAEDRFLSALAGIDEPEAKR--KTIG---HV--FIDVFDEEASKQTQVKWLAQGTIYP 339

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V                +  A      H I+S   VG                      
Sbjct: 340 DVI---------------ESAASATGNAHVIKSHHNVG---------------------- 362

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +     L  PL ++ K+ VR +  E+GL 
Sbjct: 363 --GLPEDMKLGLVEPLKELFKDEVRRIGLELGLP 394


>gi|290958063|ref|YP_003489245.1| GMP synthase [Streptomyces scabiei 87.22]
 gi|260647589|emb|CBG70694.1| GMP synthase [Streptomyces scabiei 87.22]
          Length = 526

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V     +     K +              
Sbjct: 224 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY---VDHGLMRKNETEQVEKDF------ 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D EERF                  +   +  R +   + + V  Q  A
Sbjct: 275 VAAT-GVQLKVVDAEERF------------LKALAGVSDPEQKRKIIGREFIRVFEQAQA 321

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           +++A      + L  G                  +S + +    +     L  PL  + K
Sbjct: 322 EIIADEGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFKLIEPLRKLFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 382 DEVRMVGQELGLP 394


>gi|291087963|ref|ZP_06348006.2| GMP synthase [Clostridium sp. M62/1]
 gi|291073391|gb|EFE10755.1| GMP synthase [Clostridium sp. M62/1]
          Length = 509

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 47/201 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           RV+ A+SGGVDSSV A ++ +  G  +  V      L+  N     +         D+  
Sbjct: 213 RVLCALSGGVDSSVAAVMMAKAVGKQLTCVFVDHGLLR-KNEGDEVEAVFGPNGPYDLN- 270

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
                          + ++RF +           AGET     +  R +           
Sbjct: 271 -----------FIRVNAQQRFYDK---------LAGET---DPEKKRKIIGEEFIRVFEE 307

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLR 189
             +++GA D L  G        V + G  +  + +           +    +     ++ 
Sbjct: 308 EAKKIGAVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKEII 357

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR    E+G+ 
Sbjct: 358 EPLRMLFKDEVRKAGLELGIP 378


>gi|189194249|ref|XP_001933463.1| GMP synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187979027|gb|EDU45653.1| GMP synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 541

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 29/196 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG             R       +   D     + 
Sbjct: 236 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAVMVDNGVLRLNEAVQVKKTLD-----EG 286

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++  V D  + F +            G T  P  +  R +  +  + V +Q    + A
Sbjct: 287 LGINLTVIDASDLFLDR---------LKGVTDDP--EKKRKIIGNTFIEVFQQQAEKIKA 335

Query: 143 TGHYIRSRLYVG--------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             H   +   +          D         P    +   + +    +     +  PL +
Sbjct: 336 EAHESANAGEIEWLLQGTLYPDVIESLSFKGPSQTIKTH-HNVGGLPKDMKLKVIEPLRE 394

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+G+ 
Sbjct: 395 LFKDEVRQLGKELGIP 410


>gi|17546150|ref|NP_519552.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ralstonia solanacearum GMI1000]
 gi|44887970|sp|Q8XZG4|GUAA_RALSO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|17428446|emb|CAD15133.1| probable gmp synthase [glutamine-hydrolyzing]
           (glutamineamidotransferase) (gmp synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 547

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 233 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ--------------- 274

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G  T +   +  R +   + + V     + 
Sbjct: 275 ------MVLDMFEGRLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQAEAKT 328

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 329 LTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 381

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 382 LFKDEVRELGVALGLP 397


>gi|331084260|ref|ZP_08333365.1| GMP synthase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401795|gb|EGG81372.1| GMP synthase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 514

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 26/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   + +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G       
Sbjct: 209 IRKKVGNGKVLCALSGGVDSSVAAVMLSKAVGNQLTCVF---VDHGLLRKDEGDEVEAVF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +      +++    + +ERF   +                 +     ++       
Sbjct: 266 GPNGQ-----YDLNFIRVNAQERFYAKLKG--VEEPEEKRK----IIGEEFIRV--FEEE 312

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            +++GA D L  G      +  G  G+          + +               ++  P
Sbjct: 313 AKKIGAVDFLVQGTIYPDVVESGVGGE--------STVIKSHHNVGGLPDYVDFKEIIEP 364

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR    E+G+ 
Sbjct: 365 LRDLFKDEVRKAGLELGIP 383


>gi|325299729|ref|YP_004259646.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170]
 gi|324319282|gb|ADY37173.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170]
          Length = 430

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 19 KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          KD ++VVA+SGG DS V     L + GY  +      +   K S R        D    +
Sbjct: 18 KDDKIVVALSGGADS-VALLRVLLQGGYTCVAAHCNFHLRGKESDR--------DAAFVQ 68

Query: 78 RVCDTINVSHYVFDY 92
           +C  + V  ++ D+
Sbjct: 69 TLCTKLQVPLHIHDF 83


>gi|227515348|ref|ZP_03945397.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus fermentum ATCC
           14931]
 gi|227086262|gb|EEI21574.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus fermentum ATCC
           14931]
          Length = 520

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           + +   +   ++ +   D +V++ +SGGVDSSV A L+ +     IG  +T    +    
Sbjct: 208 MDDFIDMQVDEIRQTVGDKKVILGLSGGVDSSVTAVLIHKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +          D       + V+    D  +RF              G +  P    
Sbjct: 264 RKNEADSVMKALSAD-------LGVNIIKVDAADRFLGK---------LKGISD-PEQKR 306

Query: 121 NRTVK--FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
               K   +      +++  AD LA G      +  G D  +     +           +
Sbjct: 307 KTIGKEFVAVFDEEAKKMKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN-------V 356

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++    L  PL  + K+  R L  ++G+ 
Sbjct: 357 GGLPEKMGFKLIEPLRSLFKDETRQLGEKLGIP 389


>gi|167392464|ref|XP_001740167.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895845|gb|EDR23434.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 250

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGS 66
           ++N  +    P D R+++  SGG DS ++  +L      V+G T     +          
Sbjct: 23  KMNEREKIVAPHD-RIIIGFSGGKDSFLLVHILS-----VLGKTSHFPLDILVVHVTNKQ 76

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                ++ D++ +C+++ +     +        V            T   C++C +  + 
Sbjct: 77  VGYQLNIEDSKALCESMGIPFITLE-----SEPVSKIDIEDADKNTTF--CLNCGKNRR- 128

Query: 127 SDLLSVTRQLGADVLATGHY 146
             LL   ++ G   +A GH+
Sbjct: 129 RALLEYAKEHGYTSIALGHH 148


>gi|67522853|ref|XP_659487.1| hypothetical protein AN1883.2 [Aspergillus nidulans FGSC A4]
 gi|40745892|gb|EAA65048.1| hypothetical protein AN1883.2 [Aspergillus nidulans FGSC A4]
          Length = 468

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++ VA SGG+D+SV+   L  +GY+V+  T                   +D    +  
Sbjct: 3   KGKICVAFSGGLDTSVILKWLIDEGYEVVAFT-------------ADVGQEEDFAAIKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +  V   V D    F   +  P  +  A  E          R V     + V ++ G
Sbjct: 50  ALKLGAVKAEVVDLRREFVEELCFPAIACNAIYENVYLLGTSLARPVIARAQIEVAKREG 109

Query: 138 ADVLATG 144
              ++ G
Sbjct: 110 CFAVSHG 116


>gi|291043882|ref|ZP_06569598.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
 gi|291012345|gb|EFE04334.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
          Length = 445

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 24  FPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPR 73

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  R  CD + V           +  V        AA              +++ 
Sbjct: 74  ADDWADFCRNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 117

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 118 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 166

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 167 IWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 223


>gi|264678545|ref|YP_003278452.1| GMP synthase, large subunit [Comamonas testosteroni CNB-2]
 gi|262209058|gb|ACY33156.1| GMP synthase, large subunit [Comamonas testosteroni CNB-2]
          Length = 541

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVY-D 75
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L                + V  D
Sbjct: 232 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMFEGKLHAKVVRVD 291

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  +   +          E+ R  +   F   + A                ++ L     
Sbjct: 292 ASAL--FLG-ELAGVSEPEQKRKIIGRLFVDVFKAE---------------AEKLKAANA 333

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL 192
              GA  LA G      +  G    ++ +  +           +     +QL   L  PL
Sbjct: 334 GSKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPL 385

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 386 RDLFKDEVRELGVALGLP 403


>gi|189460122|ref|ZP_03008907.1| hypothetical protein BACCOP_00758 [Bacteroides coprocola DSM 17136]
 gi|189433164|gb|EDV02149.1| hypothetical protein BACCOP_00758 [Bacteroides coprocola DSM 17136]
          Length = 517

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + +VV+ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 ELKQQLGNDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNE----FKN 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++D     + + ++    D  E+F +           AG T  P  +  R +     + 
Sbjct: 259 VLHDY----ECLGLNVIGVDASEKFFSE---------LAGVT-EP--ERKRKIIGKGFID 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  +  A  +    ++       D  +   I    +    +    +    ++    L  P
Sbjct: 303 VFDE-EAHKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LRLLFKDEVRRVGRELGMP 376


>gi|147920753|ref|YP_685441.1| putative thiamine biosynthesis ATP pyrophosphatase [uncultured
           methanogenic archaeon RC-I]
 gi|56295614|emb|CAH04855.1| thiamine biosynthesis protein (ATP pyrophosphatase [uncultured
           archaeon]
 gi|110620837|emb|CAJ36115.1| putative thiamine biosynthesis ATP pyrophosphatase [uncultured
           methanogenic archaeon RC-I]
          Length = 391

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 49/199 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              ++V  +SGG+DS V A L+ + G ++I + +                      DA+ 
Sbjct: 179 SQGKMVALISGGIDSPVAAWLMMKRGCEIIPLYMDN--------------TPYLGEDAK- 223

Query: 79  VCDTINV--SHYVFDYEERFRNAVI---VPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              TI++    + +      +  +     P       G     CV C + + +    ++ 
Sbjct: 224 -AKTIDIVRKLHEWAPGREMKMYIAPHGQPLREFLQKGNKKYTCVFC-KHLMYKVARAIA 281

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + GA  + TG  +        +     +M    D++                   FP+ 
Sbjct: 282 EKEGAHGIITGSSLGQVASQTSEN----MMAEAYDVD-------------------FPIY 318

Query: 194 D----MKKESVRDLAREMG 208
                + KE +  +A+++G
Sbjct: 319 HPLIGLDKEEIMTIAKKIG 337


>gi|296130388|ref|YP_003637638.1| GMP synthase, large subunit [Cellulomonas flavigena DSM 20109]
 gi|296022203|gb|ADG75439.1| GMP synthase, large subunit [Cellulomonas flavigena DSM 20109]
          Length = 533

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 65/203 (32%), Gaps = 41/203 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDSSV AAL++R  G  +  V     +       +              
Sbjct: 228 DARVICGLSGGVDSSVAAALVQRAVGDQLTCVF---VDHGLLRAGEAEQVEQDF------ 278

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T  V   V D  ERF  A          AG T     +  R +             R
Sbjct: 279 VAAT-GVQLKVVDARERFLTA---------LAGVT---DPETKRKIIGREFIRVFEDAAR 325

Query: 135 QLGADVLATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           Q+  D  A G  +   +        V   G       +           +         +
Sbjct: 326 QVVEDAGAHGEAVEFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPDDLQFE 378

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  E+G+ 
Sbjct: 379 LVEPLRTLFKDEVRAVGLELGVP 401


>gi|229525412|ref|ZP_04414817.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae bv. albensis
           VL426]
 gi|229338993|gb|EEO04010.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae bv. albensis
           VL426]
          Length = 517

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGNRLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|330930353|ref|XP_003302998.1| hypothetical protein PTT_15010 [Pyrenophora teres f. teres 0-1]
 gi|311321300|gb|EFQ88898.1| hypothetical protein PTT_15010 [Pyrenophora teres f. teres 0-1]
          Length = 541

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 29/196 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG             R       +   D     + 
Sbjct: 236 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAVMVDNGVLRLNEAVQVKKTLD-----EG 286

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++  V D  + F +            G T  P  +  R +  +  + V +Q    + A
Sbjct: 287 LGINLTVIDASDLFLDR---------LKGVTDDP--EKKRKIIGNTFIEVFQQQAEKIKA 335

Query: 143 TGHYIRSRLYVG--------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             H   +   +          D         P    +   + +    +     +  PL +
Sbjct: 336 EAHESANAGEIEWLLQGTLYPDVIESLSFKGPSQTIKTH-HNVGGLPKDMKLKVIEPLRE 394

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L +E+G+ 
Sbjct: 395 LFKDEVRQLGKELGIP 410


>gi|297243651|ref|ZP_06927582.1| GMP synthase [Gardnerella vaginalis AMD]
 gi|296888402|gb|EFH27143.1| GMP synthase [Gardnerella vaginalis AMD]
          Length = 520

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 47/203 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGNQLTCVF-----VDHGLLRKGEVEQVKHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFS 127
               +     D E+ F            +  +I   F  ++   +               
Sbjct: 270 ---GIKLIAVDAEDDFLNALKGVSEPERKRKIIGEKFIRTFEKAQ--------------R 312

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            ++    + GA+V            V   G       +           +    +     
Sbjct: 313 QVIEEAGKSGAEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDLKFK 365

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  E+GL 
Sbjct: 366 LIEPLRTLFKDEVRAIGTELGLP 388


>gi|253582187|ref|ZP_04859410.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           varium ATCC 27725]
 gi|251835726|gb|EES64264.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           varium ATCC 27725]
          Length = 512

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 42/200 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSV A L+ +     IG         + +         +   +A++V
Sbjct: 215 DKKVLLGLSGGVDSSVAATLIHKA----IG--------DQLTCIFVDTGLLRK-DEAKKV 261

Query: 80  CDTINVSHYV----FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +    + ++     D E+RF             AG   +   +  R +   + + V  +
Sbjct: 262 MEVYGENFHMNIKCIDAEDRFLTK---------LAG---VSDPETKRKIIGKEFIEVFDE 309

Query: 136 -----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                   + LA G  I   +      K   +  +           +    +     L  
Sbjct: 310 EAKKIKDVEFLAQG-TIYPDVIESMSVKGPSMTIKSHHN-------VGGLPEDMKFKLLE 361

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR + RE+G+ 
Sbjct: 362 PLRELFKDEVRKVGRELGIP 381


>gi|254448672|ref|ZP_05062130.1| argininosuccinate synthase [gamma proteobacterium HTCC5015]
 gi|198261680|gb|EDY85967.1| argininosuccinate synthase [gamma proteobacterium HTCC5015]
          Length = 403

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++A  L+   Y    VT                  G+++  AR   
Sbjct: 5   KKVVLAYSGGLDTSIIAKWLQDT-YQCEVVTF-----------TADLGQGEEIEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QAMGIQEIYIEDLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLISKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|311896498|dbj|BAJ28906.1| putative GMP synthase [Kitasatospora setae KM-6054]
          Length = 528

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   
Sbjct: 226 DKRAICGLSGGVDSAVAAALVQRAIGDRLTCVY-----VDHGLMRKGETEQVE--KD--F 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D EERF  A+              +   +  R +   + + V  Q  A
Sbjct: 277 VAAT-GVKLVVVDAEERFLTALKG------------VSDPEQKRKIIGREFIRVFEQAQA 323

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           D++A        L  G                  +S + +    +     L  PL  + K
Sbjct: 324 DIIADEGPAVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFQLVEPLRKLFK 383

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 384 DEVRMVGQELGLP 396


>gi|197124542|ref|YP_002136493.1| thiamine biosynthesis protein [Anaeromyxobacter sp. K]
 gi|220919267|ref|YP_002494571.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196174391|gb|ACG75364.1| thiamine biosynthesis protein [Anaeromyxobacter sp. K]
 gi|219957121|gb|ACL67505.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 351

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 18/210 (8%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDA 76
           K  + +  +SGG+DS++  AL++  G +V  V          ++R+  G         +A
Sbjct: 3   KQGKAIGLISGGLDSTLALALVRGQGIEVKAVNFYTGFCITETQRRKGGRPDGTVPQNEA 62

Query: 77  RRVCDTINVSHYVFDYEER-FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R    + V     D     + + ++ P    +  G    PCVDC   +       +   
Sbjct: 63  LRAAADLEVDIEYVDISGPGYFDMLVNP---RWGYGANANPCVDCRVFM-MRRAKEIMEA 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GAD + TG  +  R         RR   R   +   +S       +  L     P    
Sbjct: 119 EGADFIFTGEVLGQRPKSQ-----RRDTLR---IIERESGLDGRLLRP-LSAKLLPPTIP 169

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQ 225
           +KE + D  RE  LDI+ +  ++ +   ++
Sbjct: 170 EKEGIVD--RERLLDISGRGRTRQMALAEE 197


>gi|91216303|ref|ZP_01253270.1| argininosuccinate synthase [Psychroflexus torquis ATCC 700755]
 gi|91185441|gb|EAS71817.1| argininosuccinate synthase [Psychroflexus torquis ATCC 700755]
          Length = 394

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V+A SGG+D+S  A  L + GY+V  V         +    G         +A+ + 
Sbjct: 2   KKLVIAYSGGLDTSYCAVSLSKAGYEVHAV---------SVNTGGFTSEEIKKIEAKAL- 51

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLGA 138
             + V+ Y   D  + +   VI              P       +  +  ++   + + A
Sbjct: 52  -KMGVATYQNIDAIQSYYQKVIKYLIYGNVLKNNTYPLSVSAERIIQAIEIVQYAKSINA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 QYIAHG 116


>gi|311695258|gb|ADP98131.1| argininosuccinate synthase [marine bacterium HP15]
          Length = 408

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 10  KKVVLAYSGGLDTSVIVRWLQDT-YNCEVVTF-----------TADIGQGEEVEPARAKA 57

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 58  EALGVKEIYIEDLREEFVRDYVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIDI 111

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 112 ANETGADAISHG 123


>gi|169832363|ref|YP_001718345.1| ExsB family protein [Candidatus Desulforudis audaxviator MP104C]
 gi|169639207|gb|ACA60713.1| ExsB family protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 265

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 70/225 (31%), Gaps = 49/225 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VVVA+SGGVDS+ V  L +     V+G          A+       A  D+  AR +   
Sbjct: 18  VVVALSGGVDSATVLCLARE----VLG------ERVAAATAVAGIHARADLQRARALAAL 67

Query: 83  INVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           + V H        F    +  P   + +       C  C   + F  L  +    G   +
Sbjct: 68  LGVRHL------EFPGGQLADPLFLANSRDR----CYRCKSML-FRKLREIACSEGLASI 116

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKES 199
             G          D  + R  +    +                   +  PL    + K  
Sbjct: 117 IDG------TNASDAREYRPGLQAAAEAG-----------------VVSPLLEAGLGKPE 153

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           VR LA  +GL   ++    + C   +  Y + +          G+
Sbjct: 154 VRSLAFSLGLKFWNQPS--ESCLATRIPYGEPLTPEKLEQIQAGE 196


>gi|69247008|ref|ZP_00604209.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
 gi|68194993|gb|EAN09459.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
          Length = 537

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 221 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHV 275

Query: 61  SKRKGSCCAGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 276 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 326

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 327 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 372

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 373 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 406


>gi|242398524|ref|YP_002993948.1| predicted ATPase, PP-loop superfamily [Thermococcus sibiricus MM
           739]
 gi|242264917|gb|ACS89599.1| predicted ATPase, PP-loop superfamily [Thermococcus sibiricus MM
           739]
          Length = 203

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 22/142 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V    SGG DSS+ A +LKR GY+V  VT+                       AR   
Sbjct: 1   MEVYHLYSGGKDSSLAAYILKRLGYEVKLVTVNF-------------GVLDSWKYARETA 47

Query: 81  DTINVSHYVFDYEERFRNA-VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            ++   H V     RF +  ++            P   +   + +    L  + R    +
Sbjct: 48  QSLGFEHEV-----RFLDRKILEKATEMCIKDNHPNNAI---QFIHEMALEEIARCEDVE 99

Query: 140 VLATGHYIRSRLYVGDDGKRRR 161
            ++ G     R+ + D  K R 
Sbjct: 100 RISDGTRRDDRVPLLDQRKTRS 121


>gi|314996626|ref|ZP_07861655.1| GMP synthase protein [Enterococcus faecium TX0133a01]
 gi|313589222|gb|EFR68067.1| GMP synthase protein [Enterococcus faecium TX0133a01]
          Length = 520

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 204 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHV 258

Query: 61  SKRKGSCCAGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 259 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 309

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 310 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 355

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 356 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 389


>gi|309386087|gb|ADO66968.1| GMP synthase [Enterococcus faecium]
          Length = 521

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 205 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHV 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 260 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 310

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 311 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 356

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 390


>gi|288802304|ref|ZP_06407744.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella
           melaninogenica D18]
 gi|288335271|gb|EFC73706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella
           melaninogenica D18]
          Length = 456

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+SGG DS V   L LK  GY V  V        + S R    C          +C  
Sbjct: 22  LVALSGGADS-VALLLCLKELGYRVEAVHCNFNLRGEESLRDEQFCED--------LCQR 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+  +               F +   A    +      R +++     +   LGA+ + 
Sbjct: 73  ENIPFHKV------------HFDTQAYADLHKVSIEMAARELRYRYFFQLKEALGANGVC 120

Query: 143 TGHY 146
            GH+
Sbjct: 121 VGHH 124


>gi|225016794|ref|ZP_03705986.1| hypothetical protein CLOSTMETH_00706 [Clostridium methylpentosum
           DSM 5476]
 gi|224950462|gb|EEG31671.1| hypothetical protein CLOSTMETH_00706 [Clostridium methylpentosum
           DSM 5476]
          Length = 273

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD----G--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS V+ A L +     G  Y+++ +TL          R G      D   
Sbjct: 55  RIAVGVSGGKDSVVLLAGLAQMRRFIGIDYELVAITL--------DPRFGG--VEMDYSP 104

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             ++C+++ + + V       +   I          E   PC  C   ++   L    + 
Sbjct: 105 IEKLCESLGIEYVV-------KRTDIGQIVFDIRKEE--NPCSLC-ARMRRGALHDEAKA 154

Query: 136 LGADVLATGHY 146
            G + +A GH+
Sbjct: 155 HGCNKIALGHH 165


>gi|32491355|ref|NP_871609.1| GMP synthase [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|31340125|sp|Q8D1V0|GUAA_WIGBR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|25166562|dbj|BAC24752.1| guaA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 522

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 72/200 (36%), Gaps = 25/200 (12%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +     D +V++ +SGG+DS   A L+ +     IG  L          R       +
Sbjct: 216 LKIKNKVNDEKVILGLSGGIDSFTSAILIHKA----IGNNLFCICIDNGLLRNDEILKIK 271

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLL 130
           ++   ++V     ++    ++++RF  +           G T P         + F    
Sbjct: 272 NLI--KKVGK---INVIYINHKKRFLKS---------LNGITDPEKKRKTIGNLFFKIFQ 317

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                L A  LA G      +Y       +  + +  +  +   + +    +     +  
Sbjct: 318 EQADILKAKWLAQG-----TIYPDIIESSQNNLLKKDNFIKSH-HNVCPLPKGIKLKILE 371

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ V+ +A+++G+ 
Sbjct: 372 PLKHLFKDEVKKIAKKIGIP 391


>gi|260662339|ref|ZP_05863234.1| GMP synthase [Lactobacillus fermentum 28-3-CHN]
 gi|260553030|gb|EEX25973.1| GMP synthase [Lactobacillus fermentum 28-3-CHN]
          Length = 517

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           + +   +   ++ +   D +V++ +SGGVDSSV A L+ +     IG  +T    +    
Sbjct: 205 MDDFIDMQVDEIRQTVGDKKVILGLSGGVDSSVTAVLIHKA----IGDQLTCIFVDHGLL 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +          D       + V+    D  +RF              G +  P    
Sbjct: 261 RKNEADSVMKALSAD-------LGVNIIKVDAADRFLGK---------LKGISD-PEQKR 303

Query: 121 NRTVK--FSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
               K   +      +++  AD LA G      +  G D  +     +           +
Sbjct: 304 KTIGKEFVAVFDEEAKKMKDADFLAQGTLYTDVIESGTDTAQT---IKSHHN-------V 353

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++    L  PL  + K+  R L  ++G+ 
Sbjct: 354 GGLPEKMGFKLIEPLRSLFKDETRQLGEKLGIP 386


>gi|56962710|ref|YP_174436.1| GMP synthase [Bacillus clausii KSM-K16]
 gi|81366846|sp|Q5WJI0|GUAA_BACSK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56908948|dbj|BAD63475.1| GMP synthetase [Bacillus clausii KSM-K16]
          Length = 515

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 65/195 (33%), Gaps = 32/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V+ A+SGGVDSSVVA L+ +     IG  L          RKG          A  V
Sbjct: 218 DRHVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFIDHGLLRKGE---------AESV 264

Query: 80  CDTI--NVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +T     +  V   D  ERF   +                 +       F +  +  + 
Sbjct: 265 METFTQGFNMNVVKIDASERFLTKLKGVTDPEQKRKIIGNEFIYV-----FDEESAKLKD 319

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D LA G      +  G D  +     +           +    +    +L  PL  +
Sbjct: 320 KKMDFLAQGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMAFELIEPLNAL 369

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L  E+G+ 
Sbjct: 370 FKDEVRALGTELGIP 384


>gi|320546686|ref|ZP_08040998.1| GMP synthase [Streptococcus equinus ATCC 9812]
 gi|320448741|gb|EFW89472.1| GMP synthase [Streptococcus equinus ATCC 9812]
          Length = 520

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 32/211 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     L   ++ +   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDLQINEIRQKVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 +  
Sbjct: 264 RKGEGDQVMN-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRK------IIG 310

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V  S       +L G D LA G      +  G D  +     +           +  
Sbjct: 311 NEFV--SVFDDEASKLKGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGG 358

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +    +L  PL  + K+ VR L   +G+ 
Sbjct: 359 LPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|288800069|ref|ZP_06405528.1| GMP synthase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333317|gb|EFC71796.1| GMP synthase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 514

 Score = 54.0 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 43/206 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L K     RV++ +SGGVDS+V A LLK+  G  +  +     +     K + +     
Sbjct: 206 ELKKQVGSDRVILGLSGGVDSTVCAMLLKKAIGNQLTCIF---VDHGMLRKNEFNNVMEA 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                      + ++    D  E+F              G T     +  R +   D + 
Sbjct: 263 YSG--------LGLNVIGVDASEKFFKD---------LEGIT---DPEQKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           V     +++  A  LA G  +  R           +                +    ++ 
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMTIKSHHN------------VGGLPKEM 350

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL  + K+ VR +  E+G+ 
Sbjct: 351 HLQLCEPLQWLFKDEVRRVGYELGIP 376


>gi|327474241|gb|EGF19648.1| GMP synthase [Streptococcus sanguinis SK408]
          Length = 520

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIIKADAAKRFLDKLAGVSEPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMRFELIEPLNTLYKDEVRALGTELGMP 389


>gi|299530953|ref|ZP_07044366.1| GMP synthase [Comamonas testosteroni S44]
 gi|298720910|gb|EFI61854.1| GMP synthase [Comamonas testosteroni S44]
          Length = 538

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVY-D 75
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L                + V  D
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMFEGKLHAKVVRVD 288

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  +   +          E+ R  +   F   + A                ++ L     
Sbjct: 289 ASAL--FLG-ELAGVSEPEQKRKIIGRLFVDVFKAE---------------AEKLKAANA 330

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL 192
              GA  LA G      +  G    ++ +  +           +     +QL   L  PL
Sbjct: 331 GSKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPL 382

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 383 RDLFKDEVRELGVALGLP 400


>gi|258647528|ref|ZP_05734997.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259]
 gi|260852303|gb|EEX72172.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259]
          Length = 480

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 47/229 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD R++VA+SGG DS V     L + GY         +   +AS R           DA 
Sbjct: 29  KDKRLLVAVSGGADS-VALLRVLHQLGYACEVAHCNFHLRGEASDR-----------DAA 76

Query: 78  RV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            V   C  + V  ++ D+             +   A    +      R +++     +  
Sbjct: 77  FVSDLCRDLGVPFHLRDFA------------TEAFARSQAVSVEMAARDLRYQWFDQLLA 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT--QQQLCDLRFPL 192
           +     +A  H+        +D      +             L      + Q   +  PL
Sbjct: 125 ERNLSAVAVAHH-------KEDNVETFFLHLARGSG------LHGLVGMRYQRGKIIRPL 171

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
            D+ +  +      +G        + D+ F    K   +  RI   +  
Sbjct: 172 LDVSRREIEAWLSAIGQPFVTDETNADVRF----KRNRLRNRILPELRQ 216


>gi|241764268|ref|ZP_04762299.1| GMP synthase, large subunit [Acidovorax delafieldii 2AN]
 gi|241366391|gb|EER60913.1| GMP synthase, large subunit [Acidovorax delafieldii 2AN]
          Length = 539

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 65/207 (31%), Gaps = 54/207 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L                      
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMFEG---------- 279

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                 ++      D  E F             AG   +   +  R +     + V    
Sbjct: 280 -----KLHAKVIRVDASELFLGK---------LAG---VSDPEQKRKIIGGLFVDVFKAE 322

Query: 133 --------TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                       GA  LA G      +  G    ++ +  +           +     +Q
Sbjct: 323 AAKLKAGGAGHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQ 374

Query: 185 LC-DLRFPLGDMKKESVRDLAREMGLD 210
           L   L  PL D+ K+ VR+L   +GL 
Sbjct: 375 LGLKLLEPLRDLFKDEVRELGVALGLP 401


>gi|237785434|ref|YP_002906139.1| argininosuccinate synthase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|259585352|sp|C4LIE1|ASSY_CORK4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|237758346|gb|ACR17596.1| Argininosuccinate synthase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 398

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L K    +V+ V++ L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLSKMTDGEVVAVSIDL------------GQGGEDMESVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   +        P V   +R +    L+   ++ G 
Sbjct: 52  LACGAVEAIVVDAKDEFAEQYCLPAIKANGLYMKQYPLVSALSRPLIVKHLVETAKEHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             +A G                    +  D  R +  F           +  P  D    
Sbjct: 112 THVAHG-----------------CTGKGNDQVRFEVGFADTAPDL---KIIAPARDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E+ L I   + S
Sbjct: 152 RDKAIAFAEEIDLPIEQSASS 172


>gi|297616780|ref|YP_003701939.1| GMP synthase, large subunit [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144617|gb|ADI01374.1| GMP synthase, large subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 510

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+ A+SGGVDSSV AAL+    G ++  V              G    G+     R 
Sbjct: 215 QKKVLCALSGGVDSSVAAALVDLAVGKNLTCVF----------VDHGLLRKGEAEQVVRT 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             +   ++    D  +RF + +                 +  +  ++        R+LG 
Sbjct: 265 FREERGMNLIYVDAAQRFLDKLQGVADPELKRK------IIGHEFIRV--FEEEARKLGQ 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G        V + G       +           +    +    +L  PL  + K
Sbjct: 317 IDFLVQG---TLYPDVIESGTATAATIKTHHN-------VGGLPEDMQFELIEPLRLLFK 366

Query: 198 ESVRDLAREMGLD 210
           + VR +  ++GL 
Sbjct: 367 DEVRRIGEQLGLP 379


>gi|296414926|ref|XP_002837146.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633000|emb|CAZ81337.1| unnamed protein product [Tuber melanosporum]
          Length = 402

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +A SGG+D+S + A L   GY+V+   +                  +D   A+    
Sbjct: 5   KVCLAYSGGLDTSCILAWLIEKGYEVV-CFMA------------DIGQEEDFEAAKEKAL 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSV 132
            I   S +V D  + F   +  P     A  E           P +   +       ++V
Sbjct: 52  KIGASSVHVVDLRKEFVEKLCYPAIQCNAIYENVYLLGTSLARPVIARGQ-------IAV 104

Query: 133 TRQLGADVLATG 144
             Q G  +++ G
Sbjct: 105 AEQEGCTLVSHG 116


>gi|219851785|ref|YP_002466217.1| PP-loop domain-containing protein [Methanosphaerula palustris
           E1-9c]
 gi|219546044|gb|ACL16494.1| PP-loop domain-containing protein [Methanosphaerula palustris
           E1-9c]
          Length = 271

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 54/233 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V+ SGGVDS+++A L       V+G      ++ +             + +A+++    
Sbjct: 21  LVSYSGGVDSALLAVLATE----VLG------SNARCILLDSQVVPRAAIEEAQQIAQDY 70

Query: 84  N-----VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     +   V D +ERF+     P    Y   +     +   + +     L        
Sbjct: 71  HLSLEIIPVPVMD-DERFKKN---PAERCYWCKKNSAEVLKWQKEI-----LHFA----- 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A G      + V D G+ R  +    +                L           K 
Sbjct: 117 -CIADG------INVSDKGEHRPGLVASTEEG---------IIHPFLEASI------TKA 154

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD-IVHLNG 250
            +R++A+  GL   +K  +   C   +  Y D +      +  E +  +HLNG
Sbjct: 155 DIREIAQSFGLQFWNKPSA--ACLSSRIPYGDEITPHKLSMIEEAEAFLHLNG 205


>gi|212638074|ref|YP_002314594.1| GMP synthase [Anoxybacillus flavithermus WK1]
 gi|212559554|gb|ACJ32609.1| GMP synthetase [Anoxybacillus flavithermus WK1]
          Length = 511

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 216 DKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------ADS 261

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E F   VI       F +       P     +  N  +  F D  
Sbjct: 262 VMKT---------FREGFHMNVIKVDAKERFLNKLKGVSDPEQKRKIIGNEFIYVFDD-- 310

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +     L  
Sbjct: 311 EAAKLDGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFKLIE 360

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 361 PLNTLFKDEVRALGTELGIP 380


>gi|166362950|ref|YP_001655223.1| argininosuccinate synthase [Microcystis aeruginosa NIES-843]
 gi|229889881|sp|B0JM14|ASSY_MICAN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166085323|dbj|BAG00031.1| argininosuccinate synthetase [Microcystis aeruginosa NIES-843]
          Length = 401

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RVV+A SGGVD+SV    LK++           +   +          G ++   + 
Sbjct: 3   RAKRVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELGPIQE 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  +   V + +E F      P   + A  E   P      R +    L+    + 
Sbjct: 52  KALRCGAIESLVVNAQEEFVKEYAFPSIQANALYENRYPLSTALARPLIAKLLVEAAEKY 111

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 112 GADAVSHG 119


>gi|326387235|ref|ZP_08208845.1| argininosuccinate synthase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208416|gb|EGD59223.1| argininosuccinate synthase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 404

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 16/128 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVV+A SGG+D+SV   +LK          LQ+  + +          G+++  AR   
Sbjct: 5   KRVVLAYSGGLDTSV---ILK---------WLQVTYNCEVVTFTADLGQGEELEPARAKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
           + + +     Y+ D  E F    + P   + A  E          R +    L+ + ++ 
Sbjct: 53  ELLGIKPEHIYIDDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLIEIAKET 112

Query: 137 GADVLATG 144
           GAD ++ G
Sbjct: 113 GADAVSHG 120


>gi|296134482|ref|YP_003641729.1| Queuosine synthesis-like protein [Thermincola sp. JR]
 gi|296033060|gb|ADG83828.1| Queuosine synthesis-like protein [Thermincola potens JR]
          Length = 276

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 47/215 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGG DS+    LL +  +DV+G      +   A           ++ +A+++ D++
Sbjct: 21  VIAFSGGCDST----LLAKVAHDVLG------SKALAVTAVSPTYTQAEIEEAKKLADSL 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++H +    E      +            P  C  C + +  S L  + R    +++  
Sbjct: 71  GLNHMIIYTNELENPDFVS---------NPPERCYYCKKEL-MSQLRELARSKNIEIILD 120

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G     R       K  + +                        +R PL +  + K  +R
Sbjct: 121 GANADDRHDFRPGQKASKELG-----------------------VRSPLQEVGLTKAEIR 157

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
            L+RE+ L   +K      C   +  Y   + R N
Sbjct: 158 SLSRELNLPTWNKPSL--ACLASRIPYGTKITREN 190


>gi|294621454|ref|ZP_06700624.1| GMP synthase [Enterococcus faecium U0317]
 gi|291598979|gb|EFF30026.1| GMP synthase [Enterococcus faecium U0317]
          Length = 510

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 194 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHV 248

Query: 61  SKRKGSCCAGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 249 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 299

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 300 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 345

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 346 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 379


>gi|110833586|ref|YP_692445.1| argininosuccinate synthase [Alcanivorax borkumensis SK2]
 gi|119361256|sp|Q0VRM5|ASSY_ALCBS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|110646697|emb|CAL16173.1| argininosuccinate synthase [Alcanivorax borkumensis SK2]
          Length = 407

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVKWLQDT-YDCEVVTF-----------TADIGQGEEVEPARAKAE 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 EETGADAISHG 118


>gi|320528889|ref|ZP_08029981.1| argininosuccinate synthase [Selenomonas artemidis F0399]
 gi|320138519|gb|EFW30409.1| argininosuccinate synthase [Selenomonas artemidis F0399]
          Length = 404

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK    G +VI V              G       V+D + 
Sbjct: 6   KKVVLAYSGGLDTSVIIPWLKEHYNGCEVIAV----------CADIGQGEELAPVHD-KA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +    +   ++ D    F    + P           Y  G +        R V    L+ 
Sbjct: 55  LASGAS-KVHIVDLTREFLEEYVWPTLKAGAVYEGKYLLGTSFA------RPVIAKALVE 107

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +A G
Sbjct: 108 IAKKEGADAIAHG 120


>gi|167837010|ref|ZP_02463893.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia thailandensis MSMB43]
          Length = 539

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPERKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|164687029|ref|ZP_02211057.1| hypothetical protein CLOBAR_00655 [Clostridium bartlettii DSM
           16795]
 gi|164603914|gb|EDQ97379.1| hypothetical protein CLOBAR_00655 [Clostridium bartlettii DSM
           16795]
          Length = 511

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 37/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L     D +V+ A+SGGVDSSV A L+ +  G ++  V     +     K +G      
Sbjct: 208 ELKATIGDKKVLCALSGGVDSSVAAVLVHKAIGDNLTCVF---VDHGLLRKNEGD----- 259

Query: 72  DVYDARRVC-DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              D  R+  +T +++    + E+RF      V  P A     GE               
Sbjct: 260 ---DVERIFRNTFDMNLIRVNAEDRFLGKLKGVTEPEAKRKIIGEEF-----------IR 305

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                + +LG  D L  G      +  G  G+      +           +    +    
Sbjct: 306 VFEEESNKLGKMDFLVQGTIYPDIVESGLGGE--SATIKSHHN-------VGGLPEDVDF 356

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL ++ K+ VR +  E+G++
Sbjct: 357 QIVEPLKELFKDEVRKIGLELGIE 380


>gi|89893534|ref|YP_517021.1| NAD synthase [Desulfitobacterium hafniense Y51]
 gi|219666862|ref|YP_002457297.1| NAD+ synthetase [Desulfitobacterium hafniense DCB-2]
 gi|89332982|dbj|BAE82577.1| NAD synthase [Desulfitobacterium hafniense Y51]
 gi|219537122|gb|ACL18861.1| NAD+ synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 255

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 41/191 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ +SGGVDS+VVA L KR   ++ IGV L             +     D  DA    + 
Sbjct: 31  VIGVSGGVDSAVVAGLCKRAFPHNSIGVIL------------PAGSNPMDREDAWLATEA 78

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQLGAD 139
           +++     D  +  +  +     +  A   T    +        ++ S L +V   L   
Sbjct: 79  LSLKAVEIDLTQAHQGILASVKKALTAQEYTFEEQLSQGNLKARLRMSTLYTVANSL--- 135

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                    + L VG D                ++Y  + T          P+  + K  
Sbjct: 136 ---------NYLVVGTDNAP-------------EAYTGYFTKYGDGGVDILPIASLTKAE 173

Query: 200 VRDLAREMGLD 210
           VR  A ++GL 
Sbjct: 174 VRAWAAQLGLP 184


>gi|315127473|ref|YP_004069476.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudoalteromonas sp. SM9913]
 gi|315015987|gb|ADT69325.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudoalteromonas sp. SM9913]
          Length = 525

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGERLTCVFVDNGLLRLNEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKFSDLL 130
                  +   ++    D E++F N           AG++          +  +      
Sbjct: 279 -------NKFGLNIVKVDAEDQFLND---------LAGKSDPEDKRKAIGHTFINV--FD 320

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L  A  L  G      +        +  + +           +          L 
Sbjct: 321 EQAKKLKNAKWLGQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMQMGLV 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 374 EPLRELFKDEVRKIGLELGLP 394


>gi|258615235|ref|ZP_05713005.1| GMP synthase [Enterococcus faecium DO]
          Length = 463

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 33/214 (15%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +     +    + +   D +V++ +SGGVDSSVV  LL++     IG         + +
Sbjct: 147 TMDNFIDMQVEKIREQVGDKKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLT 194

Query: 62  KRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                    +    A +V +++     ++    +  +RF + +                 
Sbjct: 195 SIFVDHGLLRKGE-AEQVMESLGGKFGLNIIKVNARDRFLDKLKGVSDPEQKRKIIGNEF 253

Query: 118 VDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           V       F D    +  + G   LA G        V + G       +           
Sbjct: 254 VYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------- 298

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR+L  ++G+ 
Sbjct: 299 VGGLPEDMQFELIEPLNTLFKDEVRELGTQLGMP 332


>gi|167581513|ref|ZP_02374387.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia thailandensis TXDOH]
          Length = 539

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEHKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|154151660|ref|YP_001405278.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000212|gb|ABS56635.1| PP-loop domain protein [Methanoregula boonei 6A8]
          Length = 315

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 20/131 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GY-DV--IGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           R+ V +SGG DS+ +  +L R   G  +V  + +T              +      +  A
Sbjct: 59  RIAVGLSGGKDSTALLVILSRLLPGLPEVKIVAIT---------VDEGIAGYRSDTIKSA 109

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +   + V H +  + +      I     +   G     C  C    K   L+   R  
Sbjct: 110 EALTRRLGVEHRMVSFRDL-----IGSDLDTLLLGRGKQACTICGILRK-KALMDAARDS 163

Query: 137 GADVLATGHYI 147
           GA V+ATGH +
Sbjct: 164 GATVIATGHNL 174


>gi|94265042|ref|ZP_01288810.1| Thiamine biosynthesis protein [delta proteobacterium MLMS-1]
 gi|93454475|gb|EAT04763.1| Thiamine biosynthesis protein [delta proteobacterium MLMS-1]
          Length = 338

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +   SGG+DS++   ++   G  V+ V          S   G+          ++V    
Sbjct: 5   LALFSGGLDSTLACRVMMEQGVKVVAVKF-------VSPFFGAELLAAPEAYRQKVRRQY 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +   + D  + +   +  P   ++  G+   PCVDC   +     L++  + GA  L +
Sbjct: 58  GIEVVLRDVSKPYLRMLAAP---AHGYGKNFNPCVDCKIML-MGKALAMLPEFGASFLVS 113

Query: 144 GHYIRSRLYVG 154
           G  +  R    
Sbjct: 114 GEVLGQRPMSQ 124


>gi|45357789|ref|NP_987346.1| ExsB family transcriptional regulator [Methanococcus maripaludis
           S2]
 gi|74555941|sp|Q6M0P3|QUEC_METMP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|45047349|emb|CAF29782.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 233

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 73/204 (35%), Gaps = 37/204 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+V +   K           + Y+    +   G     Q++  A+++ 
Sbjct: 1   MKAICVLSGGLDSAVTSMFAKS----------KNYDISTVTFNYGQMALNQEIKSAKKIS 50

Query: 81  DTINVSHYVFD--YEERFRN------AVIVP---FASSYAAGETPLPCVD--CNRTVKFS 127
           D +N  H+V D  + + F         +  P       +   E  +  V       + FS
Sbjct: 51  DILNADHHVIDINFVKEFSKSGLNTGNIPEPENEDLDDFEKSEKTMKAVWVPARNMIMFS 110

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   +GA+ + +G      +   D+      + R          F  +     L  
Sbjct: 111 IASGFAEGIGAEKIFSGLNKEEGVTFPDNTPE--FIER----------FNKSLEYGTLNK 158

Query: 188 LRF--PLGDMKKESVRDLAREMGL 209
           ++   PL ++ K  +  L +E+ L
Sbjct: 159 VKMVAPLYELNKPEIAKLGKELEL 182


>gi|313895595|ref|ZP_07829151.1| argininosuccinate synthase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975721|gb|EFR41180.1| argininosuccinate synthase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 404

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK    G +VI V              G       V+D + 
Sbjct: 6   KKVVLAYSGGLDTSVIIPWLKEHYNGCEVIAV----------CADIGQGEELAPVHD-KA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +    +   ++ D    F    + P           Y  G +        R V    L+ 
Sbjct: 55  LASGAS-KVHIVDLTREFLEEYVWPTLKAGAVYEGKYLLGTSFA------RPVIAKALVE 107

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +A G
Sbjct: 108 IAKKEGADAIAHG 120


>gi|257880522|ref|ZP_05660175.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257883529|ref|ZP_05663182.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257891928|ref|ZP_05671581.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260558205|ref|ZP_05830402.1| GMP synthase [Enterococcus faecium C68]
 gi|261206582|ref|ZP_05921281.1| GMP synthase [Enterococcus faecium TC 6]
 gi|257814750|gb|EEV43508.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257819187|gb|EEV46515.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257828288|gb|EEV54914.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260075787|gb|EEW64092.1| GMP synthase [Enterococcus faecium C68]
 gi|260079199|gb|EEW66891.1| GMP synthase [Enterococcus faecium TC 6]
          Length = 482

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 166 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHV 220

Query: 61  SKRKGSCCAGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 221 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 271

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 272 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 317

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 318 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 351


>gi|229917939|ref|YP_002886585.1| GMP synthase, large subunit [Exiguobacterium sp. AT1b]
 gi|229469368|gb|ACQ71140.1| GMP synthase, large subunit [Exiguobacterium sp. AT1b]
          Length = 513

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDSSVVAAL+ R     IG  L          RKG   +       +  
Sbjct: 218 DKQVLCALSGGVDSSVVAALVHRA----IGDQLTCMFVDHGLLRKGEADSVM-----KTF 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
            D  N+     D +ERF   +                 +  N  +          +L   
Sbjct: 269 ADGFNMKVIKIDAQERFLTKLAGVSDPEQKRK------IIGNEFIYV--FDEEASKLVDM 320

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +  G D  +     +           +    +     L  PL  + K+
Sbjct: 321 DFLAQGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMNFTLIEPLNTLFKD 370

Query: 199 SVRDLAREMGLD 210
            VR L  E+GL 
Sbjct: 371 EVRALGTELGLP 382


>gi|94984705|ref|YP_604069.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Deinococcus geothermalis DSM 11300]
 gi|226738436|sp|Q1J0T4|GUAA_DEIGD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94554986|gb|ABF44900.1| GMP synthase [Deinococcus geothermalis DSM 11300]
          Length = 505

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 30/191 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A+SGGVDSS +  LL R  G  +  V +                  + V  A R  
Sbjct: 212 RVLLAISGGVDSSTLGLLLARAIGDRLTAVFI--------DHGLLRLGEREQVEAALRP- 262

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
             + V+    D  E F  A+                 +     ++        R+ G  D
Sbjct: 263 --LGVNLVTVDASEEFLGALAGVSDPEQKRK------IIGREFIR--AFEREARKYGPFD 312

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G      +     G       +           +    +     L  P   + K+ 
Sbjct: 313 FLAQGTLYPDVIESA--GGEGAANIKSHHN-------VGGLPEDLAFKLVEPFRTLFKDE 363

Query: 200 VRDLAREMGLD 210
           VR++AR +GL 
Sbjct: 364 VREIARLLGLP 374


>gi|308183148|ref|YP_003927275.1| GMP synthase [Helicobacter pylori PeCan4]
 gi|308065333|gb|ADO07225.1| GMP synthase [Helicobacter pylori PeCan4]
          Length = 508

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L +E+G+ 
Sbjct: 358 PLRELFKDEVRLLGKELGIS 377


>gi|296446290|ref|ZP_06888236.1| GMP synthase, large subunit [Methylosinus trichosporium OB3b]
 gi|296256191|gb|EFH03272.1| GMP synthase, large subunit [Methylosinus trichosporium OB3b]
          Length = 531

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC- 80
           RV+  +SGGVDS+V A L+       IG          A              +A  V  
Sbjct: 230 RVLCGLSGGVDSAVAAVLIHEA----IG---------DALTCVFVDHGLLRAGEAEEVVS 276

Query: 81  ---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              D  N+     + +E F         S+ +  E P         +         +++ 
Sbjct: 277 LFRDHYNIPLVHVEAQEMF--------LSALSGVEDPEVKRKTIGRLFIETFEEEAKRIA 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD      ++       D  +       P    +   + +    ++    L  PL ++ K
Sbjct: 329 ADGRGAPQFLAQGTLYPDVIESVSFSGGPSVTIKSH-HNVGGLPERMNMQLVEPLRELFK 387

Query: 198 ESVRDLAREMGLD 210
           + VR L RE+GL 
Sbjct: 388 DEVRALGRELGLP 400


>gi|152980120|ref|YP_001353722.1| GMP synthase [Janthinobacterium sp. Marseille]
 gi|226739634|sp|A6SZM5|GUAA_JANMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|151280197|gb|ABR88607.1| GMP synthase (glutamine-hydrolysing) [Janthinobacterium sp.
           Marseille]
          Length = 539

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 46/199 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +   +              
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMF------------ 273

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----- 131
               +++ V+    D  ++F           + AG +     +  R +   + +      
Sbjct: 274 ---AESLGVNVIHIDAVDQFM---------GHLAGVS---DPEAKRKIIGREFVEVFQVE 318

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             ++  A  LA G      +     GK+   +    +        +    +     L  P
Sbjct: 319 AGKRKNAKWLAQGTIYPDVIESAGKGKKGHTIKSHHN--------VGGLPETLNLQLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L   +GL 
Sbjct: 371 LRELFKDEVRKLGVALGLP 389


>gi|88606869|ref|YP_505429.1| putative glutamine-dependent NAD(+) synthetase [Anaplasma
           phagocytophilum HZ]
 gi|88597932|gb|ABD43402.1| putative glutamine-dependent NAD(+) synthetase [Anaplasma
           phagocytophilum HZ]
          Length = 600

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGG+DS++VAA+     G + +   +                +   V DA+R  +
Sbjct: 352 VLLGLSGGIDSALVAAIASDALGAEHVHTFM----------LTTRHTSQSSVTDAQRCAE 401

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
            +   H V   EE F   +      +Y    TP 
Sbjct: 402 LLGTHHEVVSIEEAFCTCI--ESLKTYIDTPTPN 433


>gi|85375614|ref|YP_459676.1| exsB protein [Erythrobacter litoralis HTCC2594]
 gi|122543216|sp|Q2N612|QUEC_ERYLH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|84788697|gb|ABC64879.1| exsB protein [Erythrobacter litoralis HTCC2594]
          Length = 239

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 24/196 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            + +SGG+DS V AA+ +  GY V  +T+                   ++  AR +   I
Sbjct: 10  AILLSGGLDSMVTAAIAQEQGYAVHALTIDY-----------GQRHKVELQSARLIAAKI 58

Query: 84  NVSHYV---FDYEERFRNAVIVP-FASSYAAGET-PLPCVDCNRTVKFSDLLSVTRQLGA 138
               +V    D      +A+           G   P+  V     V  S   +     GA
Sbjct: 59  GAERHVEIEADLRALGGSALTDDIDVPKCGVGNDIPVTYVPARNLVFLSLTTAFAEASGA 118

Query: 139 DVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             +  G          D                 +          +     +  PL  M 
Sbjct: 119 RDIFIGVNALDYSGYPDCRPEFIESFAVTANLATK------AGVEESAPFKIHAPLQHMT 172

Query: 197 KESVRDLAREMGLDIA 212
           K  +      +GL+ A
Sbjct: 173 KADIARECARLGLESA 188


>gi|281420944|ref|ZP_06251943.1| argininosuccinate synthase [Prevotella copri DSM 18205]
 gi|281404862|gb|EFB35542.1| argininosuccinate synthase [Prevotella copri DSM 18205]
          Length = 400

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VVVA SGG+D+S     L +DG+DV        N+   S  +               
Sbjct: 3   NKKVVVAFSGGLDTSYTVMKLTQDGWDV---YAACANTGGFSSEQLKTNEEN-------- 51

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQL 136
              +    YV  D    +    +              P    +  + F    +    +++
Sbjct: 52  AYKLGAKAYVTLDVTHEYYEKSLKYMIFGNVLRNNCYPISVSSERI-FQAIAIARYAKEI 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADAIAHG 118


>gi|81299000|ref|YP_399208.1| GMP synthase [Synechococcus elongatus PCC 7942]
 gi|81167881|gb|ABB56221.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus elongatus PCC
           7942]
          Length = 575

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG      +V++    
Sbjct: 271 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLMEVFN---- 322

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +   +        +RF   +                    +  ++       +R+LG  
Sbjct: 323 -EKFKIHVEYIQARDRFLQRLEGITDPEEKRKR------IGHEFIRV--FEEESRRLGPF 373

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +            Q   L  PL  + K+
Sbjct: 374 DYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSHHNVGGLPKDLQF-KLVEPLRRLFKD 432

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 433 EVRQVGRSLGLP 444


>gi|75909219|ref|YP_323515.1| hypothetical protein Ava_3010 [Anabaena variabilis ATCC 29413]
 gi|75702944|gb|ABA22620.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 276

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS++VA +     YDV+G      +   A          +++ DA+    TI
Sbjct: 21  LIAYSGGVDSTLVAKIA----YDVLG------DRALAVTAVSPSLLPEELEDAKIQAATI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H V    E                      C  C   +    L  +  ++    +  
Sbjct: 71  GIPHKVVQTHEMDNPNYTSNPV---------NRCYFCKSEL-HDTLKPLAVEMDYPYVVD 120

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G      +   D    R  +    +                    R PL +  + K  VR
Sbjct: 121 G------VNADDLHDYRPGIQAAKERG-----------------ARSPLAEVGVTKLEVR 157

Query: 202 DLAREMGLDIADKS 215
            L++++GL   +K 
Sbjct: 158 QLSQQLGLPWWEKP 171


>gi|291483073|dbj|BAI84148.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. natto BEST195]
          Length = 516

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 221 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 266

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 267 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 315

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 316 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 365

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 366 PLNTLFKDEVRALGTELGIP 385


>gi|284162129|ref|YP_003400752.1| GMP synthase, large subunit [Archaeoglobus profundus DSM 5631]
 gi|284012126|gb|ADB58079.1| GMP synthase, large subunit [Archaeoglobus profundus DSM 5631]
          Length = 304

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 55/251 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D + ++A+SGGVDSSV A L     Y  IG      +               +
Sbjct: 14  EIREKVGDGKAIIALSGGVDSSVCAVLA----YKAIG------DRLIPVFVDTGLMREGE 63

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSD 128
               + +   + +     D +E F  A           G T     +  R +        
Sbjct: 64  PERIKEIFGHMGLVF--VDAKEEFFKA---------LKGVT---DPEEKRKIIGELFVRI 109

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V  +  AD L               G     +   M   +         T+ +   +
Sbjct: 110 FERVAEEHKADYLI-------------QGTIYPDIIESMGGIKSHHNVGGFPTKYKFKGV 156

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDIC----FVQQGKYFDVVKRINAGIALEGD 244
             PL ++ K+ VR++AR +GL        ++IC    F   G    +V  +        +
Sbjct: 157 IEPLRELYKDEVREVARYLGLP-------KEICERMPFPGPGLAVRIVGEVTPEKV---E 206

Query: 245 IVHLNGQILGR 255
           IV    +I+  
Sbjct: 207 IVRKANKIVEE 217


>gi|52548479|gb|AAU82328.1| PP-ATPase subunit of GMP synthase [uncultured archaeon GZfos14B8]
          Length = 310

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + V+A+SGGVDS+V A L  R  G  ++ V +          R+G      + + AR 
Sbjct: 21  DGKAVIAVSGGVDSTVCAVLTHRAVGDRLVAVFI-----DDGLMREGEAEQVMNFFKAR- 74

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                N++    D    F +A   ++ P                 N    +S L  V R+
Sbjct: 75  -----NMNARQVDAANEFFDALKGIVDP--EEKRKA-------FRNTF--YSVLARVVRE 118

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQQQLCDLRFPLG 193
             A+ L  G             K +  +     +D     SY L             PL 
Sbjct: 119 ENANCLVQGTIAADVAETVKGIKTQHNILEQIGIDPG---SYGLTIVE---------PLR 166

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K  VR++AR  G+ 
Sbjct: 167 EIYKPEVREVARSFGVP 183


>gi|302672133|ref|YP_003832093.1| GMP synthase GuaA [Butyrivibrio proteoclasticus B316]
 gi|302396606|gb|ADL35511.1| GMP synthase GuaA [Butyrivibrio proteoclasticus B316]
          Length = 516

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 26/200 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV+AALL +  G  +  V     +     K +G      
Sbjct: 210 EIREKVGDGKVLLALSGGVDSSVLAALLAKAIGKQLTCVF---VDHGLLRKNEGDEVESV 266

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              +        +++    +  ER+   +                 +     ++      
Sbjct: 267 FGPNG-----NFDINFIRVNAAERYYAKLKG--VEEPERKRK----IIGEEFIRV--FEE 313

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +++G  D LA G      +  G  G+   I        +               ++  
Sbjct: 314 EAKKIGKVDFLAQGTIYPDVVESGLGGESVVI--------KSHHNVGGLPDYVDFKEIIE 365

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR    E+GL 
Sbjct: 366 PLRLLFKDEVRKAGLELGLP 385


>gi|297617738|ref|YP_003702897.1| NAD+ synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145575|gb|ADI02332.1| NAD+ synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 549

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASK 62
           EA  L + D  K     + V+ +SGG+DS+V   +     G + V+G+++          
Sbjct: 277 EALVLGTRDYLKKCGFKKAVIGLSGGIDSAVTCCIAVEALGRENVLGISM---------- 326

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDC 120
                 +   V D++++   + +   V    + F +   +   F             +  
Sbjct: 327 -PSPYSSAGSVTDSQKLASNLGIQFLVIPITQVFESYLTIFDGFLEGRRL------DIAE 379

Query: 121 NR---TVKFSDLLSVTRQLGADVLATG 144
                 ++ + L++   + G  VL+TG
Sbjct: 380 ENLQARIRGNILMAFANRFGYLVLSTG 406


>gi|225631266|ref|ZP_03787949.1| bifunctional GMP synthase/glutamine [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591040|gb|EEH12239.1| bifunctional GMP synthase/glutamine [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 520

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 45/207 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AAL  +     IG  L          RK            + +
Sbjct: 220 EKKVIAAVSGGVDSSVAAALTHKA----IGKQLNCIFIDTGLLRKN-----------QTI 264

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
                +     D    F + +             G T +                  +++
Sbjct: 265 AMLKEIPINYVDKSNLFLSRLKGITDPEEKRKIIGNTFVEV-----------FEEEAKKI 313

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D L  G      +  G        +    +        +    ++    L  PL  +
Sbjct: 314 GDVDFLMQGTIYSDVVESGHASNNTSTIKSHHN--------VGGLPEKMNLKLVEPLRYL 365

Query: 196 KKESVRDLAREMGLDIADKSDSQDICF 222
            K+ VR L +E+GL       S +I F
Sbjct: 366 FKDEVRLLGKEIGL-------SDEIIF 385


>gi|84488999|ref|YP_447231.1| hypothetical protein Msp_0170 [Methanosphaera stadtmanae DSM 3091]
 gi|84372318|gb|ABC56588.1| NadE [Methanosphaera stadtmanae DSM 3091]
          Length = 265

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 50/196 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS VVA L  R  G   V G  L                + QD+YDA+ + 
Sbjct: 32  VVIGLSGGIDSCVVACLAVRALGPLRVRGYIL-----------PTITTSDQDLYDAKLIK 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-----TVKFSDLLSVTRQ 135
           D +++          +       F SS      P   ++  R      ++ S L      
Sbjct: 81  DELDIESEYISIGSIY-----DEFISSCEIKNLPQDNINLARGNLKPRIRMSILYYYATI 135

Query: 136 LGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             + V+ TG+    ++ Y    G     +                           P+GD
Sbjct: 136 YNSLVIGTGNKTELQVGYFTKHGDGGVDLL--------------------------PIGD 169

Query: 195 MKKESVRDLAREMGLD 210
           + K  V+ +A+E+G+ 
Sbjct: 170 LYKMDVKKVAQELGVP 185


>gi|197099468|ref|NP_001124563.1| GMP synthase [glutamine-hydrolyzing] [Pongo abelii]
 gi|75041859|sp|Q5RA96|GUAA_PONAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|55729155|emb|CAH91314.1| hypothetical protein [Pongo abelii]
          Length = 693

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQEQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 429


>gi|221312794|ref|ZP_03594599.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221317718|ref|ZP_03599012.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2239288|gb|AAB62311.1| GMP synthetase [Bacillus subtilis]
          Length = 513

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 219 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 264

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 265 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 313

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 314 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 363

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 364 PLNTLFKDEVRALGTELGIP 383


>gi|315231707|ref|YP_004072143.1| tRNA(U54)-2-thioribothymidine synthetase [Thermococcus barophilus
           MP]
 gi|315184735|gb|ADT84920.1| tRNA(U54)-2-thioribothymidine synthetase [Thermococcus barophilus
           MP]
          Length = 307

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 37/245 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +D R++V +SGG DS+VV+ +LK+ GY++  + +      + S +            A+
Sbjct: 45  KRDERILVVVSGGKDSAVVSYVLKKLGYNIECLYI-NLGIGEYSAKSE--------EYAK 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQL 136
           + C+ IN   ++    E     +           +T  P C  C  T ++          
Sbjct: 96  KQCEMINAKLHIVRVRELLGAGI--------GELKTSRPTCSYCGITKRY-IFNKFAYDN 146

Query: 137 GADVLATGHYI--RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLG 193
           G DV+ TGH +   +    G+                           + +      PL 
Sbjct: 147 GFDVIVTGHNLDDEASFIFGNIMNWNTQYLAKQGPL---------LPGEGKFVKKVKPLY 197

Query: 194 DMKKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           ++ +  V   A  +G+D  + +   ++    +   +  + ++    G      I  + G 
Sbjct: 198 EVTEREVVAYALAVGIDYMVEECPHARGATTLSYKEILNDMEEKRPGT----KINFVKGY 253

Query: 252 ILGRH 256
           +  RH
Sbjct: 254 LRKRH 258


>gi|91772138|ref|YP_564830.1| GMP synthase subunit B [Methanococcoides burtonii DSM 6242]
 gi|121689431|sp|Q12ZP6|GUAAB_METBU RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|91711153|gb|ABE51080.1| GMP synthase (glutamine-hydrolyzing) subunit B [Methanococcoides
           burtonii DSM 6242]
          Length = 304

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 48/225 (21%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           MV  E    N++D  K     + ++A+SGGVDSSV A L  +    D+I + +       
Sbjct: 1   MVKVEKFIPNAIDRIKEQAKGKTIIALSGGVDSSVCAVLAYQAIKDDLIPIYI-----DT 55

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLP 116
              RKG     +++          +++    D ++RF +A++            GET   
Sbjct: 56  GLMRKGETERIKEI--------FADMNLQTIDAKDRFLDALVGIKDPEEKRKVVGETF-- 105

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
                            R++ A  L  G     R+    DG  +         E      
Sbjct: 106 ---------IRVFEEEAREINAQYLIQGTIYPDRIES--DGGIKSHHNVGGLPE------ 148

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
                      +  P+ D+ K+ VR++A  + L        ++IC
Sbjct: 149 -----HIDFKGIIEPIDDLYKDEVREVAWALDLP-------EEIC 181


>gi|73666707|ref|YP_302723.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ehrlichia canis str. Jake]
 gi|91206807|sp|Q3YT30|GUAA_EHRCJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72393848|gb|AAZ68125.1| GMP synthase (glutamine-hydrolyzing) [Ehrlichia canis str. Jake]
          Length = 526

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 29/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K   D +V+ A+SGGVDSSV AAL     Y  IG  L          R         +
Sbjct: 213 IKKQVGDKKVIAAISGGVDSSVAAALT----YRAIGDQLHCIFIDNGLLRYNEAEKISQL 268

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
                + +   +   + D    F N +             G+T +   +           
Sbjct: 269 -----LVNQFQMPITIVDKSSVFLNKLKSITDPEQKRKIIGKTFIEVFEG---------- 313

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G      +  G    +  +  +           +          L  
Sbjct: 314 EANKIGGVEFLMQGTIYPDVIESGGAVGKESVTIKSHHN-------VGGLPDVMRLQLVE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L +E+G+ 
Sbjct: 367 PLKLLFKDEVRLLGKELGIS 386


>gi|120555499|ref|YP_959850.1| argininosuccinate synthase [Marinobacter aquaeolei VT8]
 gi|166220988|sp|A1U3U4|ASSY_MARAV RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|120325348|gb|ABM19663.1| argininosuccinate synthase [Marinobacter aquaeolei VT8]
          Length = 403

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVRWLQDT-YNCEVVTF-----------TADIGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  EALGVKEIYIEDLREEFVRDYVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIDI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|297182319|gb|ADI18487.1| ATP-utilizing enzymes of the PP-loop superfamily [uncultured
           Verrucomicrobiales bacterium HF4000_13K17]
          Length = 273

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 82/233 (35%), Gaps = 57/233 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VA SGGVDS     LL +   D +G  +   + +S    +R+        + +A+ +  
Sbjct: 22  LVAYSGGVDS----VLLAKVARDELGGKMLAAIADSPSLPRRE--------LEEAKNIAA 69

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGA 138
                  +      F N              T  P   C  C   + F+ L  +  + G 
Sbjct: 70  EFGFPLEIL-RTAEFTNE--DY---------TSNPVNRCYYCKHEL-FTHLEPLASERGM 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
            V+A G          D G  R       + E                 +R PL +  + 
Sbjct: 117 RVIAYGENAS------DIGDWRPGSVAAAEFE-----------------VRAPLKESGLC 153

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           K+ +R+++  +GL  ADK   Q  C   +  Y + V R   G+  E + V  +
Sbjct: 154 KDDIREISAHLGLPTADKP--QMPCLSSRIPYGEEVTRQKVGMIEEAEGVLRD 204


>gi|295134637|ref|YP_003585313.1| argininosuccinate synthase [Zunongwangia profunda SM-A87]
 gi|294982652|gb|ADF53117.1| argininosuccinate synthase [Zunongwangia profunda SM-A87]
          Length = 393

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 19/129 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
            +VV+A SGG+D+S  A  L  +G++V  V                   G    + +++ 
Sbjct: 2   KKVVIAYSGGLDTSYCAKSLSNEGFEVHAV--------------SVNTGGFSKEEVQKIG 47

Query: 80  --CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQ 135
                I  + Y   D    F   V+              P  V   R V+  ++++  ++
Sbjct: 48  DNAKKIGATTYKNIDAVSSFYTKVVKYLIFGNVLKNNTYPLSVSAERIVQAIEIINYAKE 107

Query: 136 LGADVLATG 144
           +GA  +A G
Sbjct: 108 IGAKYIAHG 116


>gi|225849058|ref|YP_002729222.1| glutamine-dependent NAD(+) synthetase (NAD(+)
           synthase[glutamine-hydrolyzing]) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644679|gb|ACN99729.1| glutamine-dependent NAD(+) synthetase (NAD(+)
           synthase[glutamine-hydrolyzing]) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 574

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGGVDSS+VA +     G + V GV +                + + + DA  
Sbjct: 317 KKVVIGLSGGVDSSLVATIAVDALGNENVKGVLM-----------PSPYTSKESIEDALE 365

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   +N+  ++      F+   +  F   +   +      +    ++ + L++++ + G 
Sbjct: 366 LAKNLNIETFIIPITNIFQT-YLDEFKEIFKGLKPDTTEENLQARIRGNILMALSNKFGW 424

Query: 139 DVLATG 144
            VLATG
Sbjct: 425 IVLATG 430


>gi|307150182|ref|YP_003885566.1| exsB protein [Cyanothece sp. PCC 7822]
 gi|306980410|gb|ADN12291.1| exsB protein [Cyanothece sp. PCC 7822]
          Length = 227

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+  AA+   DGY+VI ++L                  +++  A++V   +
Sbjct: 7   VVLLSGGLDSATSAAIALADGYEVIALSL-----------SYGQRHQRELQAAKKVVAAL 55

Query: 84  NVS-HYVFDYEERFR------NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           ++  HY+ D            + +I            P   V    TV  +  LS+    
Sbjct: 56  DIKSHYIMDVNLSQWGGSSLTDELIDMPTDGVKPNLIPNTYVPGRNTVFIAIALSLAEAK 115

Query: 137 GADVLATG 144
           GA+ +  G
Sbjct: 116 GAEAIYLG 123


>gi|256810256|ref|YP_003127625.1| GMP synthase, large subunit [Methanocaldococcus fervens AG86]
 gi|256793456|gb|ACV24125.1| GMP synthase, large subunit [Methanocaldococcus fervens AG86]
          Length = 321

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + ++A+SGGVDSSV A L  +  G  +  V            RKG     +
Sbjct: 25  EIKQQIGDRKAIIALSGGVDSSVAAVLTHKAIGNKLTAVF-----VDTGLMRKGEREEVE 79

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +      D + ++  V D ++RF  A   V  P               +  R +    
Sbjct: 80  KTFR-----DNLGLNLIVVDAKDRFLEALKGVKDP---------------EEKRKIIGKL 119

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + V              +  +  +  D    +   +             A     + ++
Sbjct: 120 FIDV---FEEIAEEIKAEVLVQGTIAPDWIETQGKIKSHHNV--------ALPHGMVLEV 168

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR LA+E+GL 
Sbjct: 169 VEPLRELYKDEVRLLAKELGLP 190


>gi|156741720|ref|YP_001431849.1| GMP synthase [Roseiflexus castenholzii DSM 13941]
 gi|156233048|gb|ABU57831.1| GMP synthase, large subunit [Roseiflexus castenholzii DSM 13941]
          Length = 512

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDS+V A ++    G  +  V +     R+    +      +  +    
Sbjct: 214 DGRVICALSGGVDSAVAALIVHHAIGDRLTCVFVDNGLLRQGEAEQVVATFREHFH---- 269

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTR 134
                 +     D  + F  A   V  P       GE            KF        R
Sbjct: 270 ------IPLIAVDAADEFLEALAGVADPEQKRTIIGE------------KFVRIFEREAR 311

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS----YFLFATTQQQLCDLR 189
           ++ GA  LA G      +             R  D ++  +    + +          L 
Sbjct: 312 RIEGARFLAQGTLYPDVIES-----------RAPDRQKGVTIKTHHNVGGLPADMQLTLV 360

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR     +GL 
Sbjct: 361 EPLRYLFKDEVRAAGHALGLP 381


>gi|15679679|ref|NP_276796.1| hypothetical protein MTH1685 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3915120|sp|O27720|THII_METTH RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|2622815|gb|AAB86157.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 389

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 28/136 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V   L+ + G  V+ V +           +             ++
Sbjct: 177 QGKVVALLSGGIDSPVATYLMMKRGCQVVAVHMDNAPFTGEEAEEK----------VEKI 226

Query: 80  CDTINVSHYVFDYEE--RFRNAVIVP--FASSYAAGE-TPLPCVDCNRTVKFS--DLLS- 131
              +       +Y     F+        +  S   G    + CV C    KF    L   
Sbjct: 227 AAKL------AEYSAGVEFKLRTFSYGRYLESCRRGAPEKMTCVLC----KFGMYHLAEM 276

Query: 132 VTRQLGADVLATGHYI 147
           V  + GA  +  G  +
Sbjct: 277 VAEEEGALAIVDGSSL 292


>gi|282162868|ref|YP_003355253.1| argininosuccinate synthase [Methanocella paludicola SANAE]
 gi|282155182|dbj|BAI60270.1| argininosuccinate synthase [Methanocella paludicola SANAE]
          Length = 393

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   +LK + G+D VI VT            + +         A+ 
Sbjct: 2   KKVVLAYSGGLDTSVCIPILKENYGFDKVITVT--------VDVGQPAGEIETASKKAKL 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + D     HY  D ++ F    I P   + A  E  +      R +     + V  +  A
Sbjct: 54  IADK----HYTMDAKDEFVRDYIFPAIKANAMYEGYVIGTSLARPLIAKKCVDVALKEKA 109

Query: 139 DVLATG 144
           D LA G
Sbjct: 110 DALAHG 115


>gi|259487237|tpe|CBF85751.1| TPA: arginosuccinate synthetase (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 416

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++ VA SGG+D+SV+   L  +GY+V+  T                   +D    +  
Sbjct: 3   KGKICVAFSGGLDTSVILKWLIDEGYEVVAFT-------------ADVGQEEDFAAIKEK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +  V   V D    F   +  P  +  A  E          R V     + V ++ G
Sbjct: 50  ALKLGAVKAEVVDLRREFVEELCFPAIACNAIYENVYLLGTSLARPVIARAQIEVAKREG 109

Query: 138 ADVLATG 144
              ++ G
Sbjct: 110 CFAVSHG 116


>gi|187777304|ref|ZP_02993777.1| hypothetical protein CLOSPO_00856 [Clostridium sporogenes ATCC
           15579]
 gi|187774232|gb|EDU38034.1| hypothetical protein CLOSPO_00856 [Clostridium sporogenes ATCC
           15579]
          Length = 279

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 52/220 (23%)

Query: 19  KDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD++ V VA SGGVDS+    LL +   + +G      ++  +           ++ +A+
Sbjct: 26  KDLKSVAVAFSGGVDST----LLLKAAKEALG------DNAISITIVSPYIPKWEIKEAK 75

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTR 134
            + + I +  Y  +           P            P   C  C ++V F+ +  + +
Sbjct: 76  ELVNKIGIKSYFIEV----------PMLEEIR----FNPEDRCYICKKSV-FNKIKCLAK 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G   +  G          DD K  R   R +                 L +       
Sbjct: 121 EKGIKYIVDGTNA-------DDTKDYRPGMRALKEL--------EVKSPLLENAI----- 160

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             KE +R L++E+ LD  DK      C + +  Y   +K+
Sbjct: 161 -NKEEIRILSKELQLDTWDKP--AYACLLSRIPYNQEIKK 197


>gi|258616836|ref|ZP_05714606.1| GMP synthase [Enterococcus faecium DO]
          Length = 451

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 135 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHV 189

Query: 61  SKRKGSCCAGQDVYDARRVCDTIN----VSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 190 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 240

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +  + G   LA G        V + G       +          
Sbjct: 241 FVYV-----FDDEATKLAGEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 286

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 287 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 320


>gi|213514834|ref|NP_001134536.1| Argininosuccinate synthase [Salmo salar]
 gi|209734100|gb|ACI67919.1| Argininosuccinate synthase [Salmo salar]
          Length = 412

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK +GYDVI   L      +                A++  ++
Sbjct: 6   VVLAYSGGLDTSCILVWLKEEGYDVI-TYLANIGQEEDFDA------------AKKKAES 52

Query: 83  INV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           +     ++ D    F    I P           Y  G +   PC+   +       + + 
Sbjct: 53  LGAKKVFIEDLRAEFVEEFIWPSVQASAIYEDRYLLGTSVARPCIARRQ-------IQIA 105

Query: 134 RQLGADVLATG 144
           RQ GA  ++ G
Sbjct: 106 RQEGAQYVSHG 116


>gi|152990743|ref|YP_001356465.1| argininosuccinate synthase [Nitratiruptor sp. SB155-2]
 gi|166220999|sp|A6Q3P9|ASSY_NITSB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|151422604|dbj|BAF70108.1| argininosuccinate synthase [Nitratiruptor sp. SB155-2]
          Length = 405

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 7   KVVLAYSGGLDTSVILKWLQET-YNCEVVTF-----------TADIGQGEEVEPAREKAL 54

Query: 82  TINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + +     ++ D +E F    + P           Y  G +    +   R +       
Sbjct: 55  KLGIKPENIFIEDLKEEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQI------E 108

Query: 132 VTRQLGADVLATG 144
           + RQ+GAD +A G
Sbjct: 109 IARQVGADAVAHG 121


>gi|17228781|ref|NP_485329.1| hypothetical protein alr1286 [Nostoc sp. PCC 7120]
 gi|17130633|dbj|BAB73243.1| alr1286 [Nostoc sp. PCC 7120]
          Length = 275

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 57/200 (28%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS++VA +     YD +G      +   A          +++ DA+    TI
Sbjct: 20  LIAYSGGVDSTLVAKIA----YDALG------DRALAVTAVSPSLLPEELEDAKIQAATI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGE---TPLP---CVDCNRTVKFSDLLSVTRQLG 137
            +SH +                 +Y       T  P   C  C   +    L  +  ++G
Sbjct: 70  GISHKIV---------------QTYEMDNPNYTSNPVNRCYFCKSEL-HDTLKPLALEMG 113

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
              +  G      +   D    R  +    +                    R PL +  +
Sbjct: 114 YPYVVDG------VNADDLHDYRPGIQAAKERG-----------------ARSPLAEFGI 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  VR L++++GL   +K 
Sbjct: 151 TKLEVRQLSQQLGLPWWEKP 170


>gi|254804970|ref|YP_003083191.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14]
 gi|254668512|emb|CBA05883.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14]
          Length = 436

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GSFI----PDALHIHHGLSPRADDW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|119480067|ref|XP_001260062.1| argininosuccinate synthase [Neosartorya fischeri NRRL 181]
 gi|119408216|gb|EAW18165.1| argininosuccinate synthase [Neosartorya fischeri NRRL 181]
          Length = 416

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V VA SGG+D+SV+   L  +GY+V+  T                   +D    R 
Sbjct: 2   SKGKVCVAFSGGLDTSVILKWLIDEGYEVVAFT-------------ADVGQEEDFDAIRE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               +  V   + D    F   +  P  +  A  E          R V     + V ++ 
Sbjct: 49  KALKLGAVKCEIADLRREFIEQLCFPAIACNAIYENVYLLGTSLARPVIARAQIEVAKRE 108

Query: 137 GADVLATG 144
           G   ++ G
Sbjct: 109 GCFAVSHG 116


>gi|77359602|ref|YP_339177.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudoalteromonas haloplanktis TAC125]
 gi|91206821|sp|Q3IHJ1|GUAA_PSEHT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|76874513|emb|CAI85734.1| GMP synthetase (glutamine aminotransferase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 525

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGEKLTCVFVDNGLLRLNEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKFSDLL 130
                  +   ++    + EE+F N           AG++          +  +      
Sbjct: 279 -------NKFGLNIVKVEAEEQFLND---------LAGKSDPEDKRKAIGHTFINV--FD 320

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L  A  LA G      +        +  + +           +          L 
Sbjct: 321 EQAKKLKNAKWLAQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPADMKMGLV 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 374 EPLRELFKDEVRKIGLELGLP 394


>gi|116670063|ref|YP_830996.1| argininosuccinate synthase [Arthrobacter sp. FB24]
 gi|166219944|sp|A0JV26|ASSY_ARTS2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116610172|gb|ABK02896.1| argininosuccinate synthase [Arthrobacter sp. FB24]
          Length = 401

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 64/202 (31%), Gaps = 43/202 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    +    G +VI V             +G          A    
Sbjct: 4   RIVLAYSGGLDTSVAIGWIGEATGAEVIAV--------AVDVGQGGESLETIRQRA---- 51

Query: 81  DTIN---VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             +    V  YV D  + F N   +P   + A  +   P V   +R V    L+   R+ 
Sbjct: 52  --LGCGAVEAYVADASDEFANEYCMPTLKANALYQGHYPLVSAISRPVIVKHLVKAAREF 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD- 194
           GA  +A G                   C       DQ  F               P+ D 
Sbjct: 110 GATTVAHG-------------------CTGK--GNDQVRFEVGIQTLGPDLKCIAPVRDL 148

Query: 195 -MKKESVRDLAREMGLDIADKS 215
            + ++     A E GL I    
Sbjct: 149 ALTRDKAIAFAEEKGLPIETTK 170


>gi|313668289|ref|YP_004048573.1| hypothetical protein NLA_9780 [Neisseria lactamica ST-640]
 gi|313005751|emb|CBN87205.1| hypothetical protein NLA_9780 [Neisseria lactamica 020-06]
          Length = 445

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCA 69
             +   + +  VA+SGG+DS V+  LL R     G+    V +            G    
Sbjct: 24  FPQGLNEKKTAVALSGGLDSVVLLHLLVRAGKKGGFIPEAVHIH----------HGLSPR 73

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 74  ADDWADFCQNYCDMLGVRLETV------KVCVEKNGLGIEAAARQK----------RYAA 117

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 118 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 166

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 167 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 223


>gi|224110162|ref|XP_002315434.1| predicted protein [Populus trichocarpa]
 gi|222864474|gb|EEF01605.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +  G     +    A   C
Sbjct: 12  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGVGELEGLEQKAKASGAC 65

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 66  Q-----LVVKDLQEEFVRDFIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDVA 114

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL- 192
           +++GAD +A G   +         +      R            FA   +   ++  P  
Sbjct: 115 KEVGADAVAHGCTGKGNDQACLTNRSNLTNTRAFPSSVRFELTFFALNPE--LNVVAPWR 172

Query: 193 -GDMK-KESVRDLAREMGLDIADKSDS 217
             D+  +E   + A++  + +     S
Sbjct: 173 EWDITGREDAIEYAKKHNVPVPVTKKS 199


>gi|148244956|ref|YP_001219650.1| GMP synthase [Candidatus Vesicomyosocius okutanii HA]
 gi|259647753|sp|A5CVV4|GUAA_VESOH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|146326783|dbj|BAF61926.1| GMP synthase (glutamine-hydrolysing) [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 521

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVA LL++  G  +  V +     R     K            +    
Sbjct: 226 VLLGLSGGVDSSVVAILLQQAVGKQLTCVFVDNGLLRLNEGNKIM----------QTFAQ 275

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140
            ++V     + +E+F NA+                 +  +  +         R+L     
Sbjct: 276 NMSVKVIRVNAQEKFYNALSNEDKPEAKRK------IIGHAFI--EVFEEEARKLNNIQF 327

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT-QQQLCDLRFPLGDMKKES 199
           LA G      +        +  + +           +       QL  L  P+ ++ K+ 
Sbjct: 328 LAQGTIYPDVIESAGTKSNKTKVIKSHHN-------VGGLPNSLQLT-LVEPIKELFKDE 379

Query: 200 VRDLAREMGLDIA 212
           VR +   +GL   
Sbjct: 380 VRKIGVILGLPTH 392


>gi|325567405|ref|ZP_08144072.1| GMP synthase [Enterococcus casseliflavus ATCC 12755]
 gi|325158838|gb|EGC70984.1| GMP synthase [Enterococcus casseliflavus ATCC 12755]
          Length = 521

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 35/215 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +          
Sbjct: 205 TMDNFIDMEIAKIREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHG 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
             RKG          A +V +++     ++    D +ERF + +                
Sbjct: 260 LLRKGE---------AEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNE 310

Query: 117 CVDCNRTVKFSDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            V       F D    +    G   LA G        V + G       +          
Sbjct: 311 FVYV-----FDDEATKLAGDEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN------ 356

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +     L  PL  + K+ VR+L  ++G+ 
Sbjct: 357 -VGGLPEDMQFKLIEPLNTLFKDEVRELGTQLGMP 390


>gi|302392166|ref|YP_003827986.1| preQ(0) biosynthesis protein QueC [Acetohalobium arabaticum DSM
          5501]
 gi|302204243|gb|ADL12921.1| preQ(0) biosynthesis protein QueC [Acetohalobium arabaticum DSM
          5501]
          Length = 223

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV  SGG+DS+    L K  GY V  ++ +                 +++  A+R+ 
Sbjct: 2  KKAVVLFSGGLDSTTALYLAKSKGYQVYALSFKY-----------GQSHSRELEAAKRIA 50

Query: 81 DTINVSHYVF 90
          D + V+ +V 
Sbjct: 51 DQVGVAEHVV 60


>gi|237750144|ref|ZP_04580624.1| argininosuccinate synthase [Helicobacter bilis ATCC 43879]
 gi|229374331|gb|EEO24722.1| argininosuccinate synthase [Helicobacter bilis ATCC 43879]
          Length = 401

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   +LK  G  Y+   VT                  G++V  AR 
Sbjct: 4   KKVVLAYSGGLDTSV---ILKWLGDNYNCEVVTF-----------TADIGQGEEVEPARA 49

Query: 79  VCDTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
               + +      + D  E F    + P           Y  G +    +   R      
Sbjct: 50  KALKLGIKSENIFIEDLREEFIKDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------ 103

Query: 129 LLSVTRQLGADVLATG 144
           L+ + + +GAD +A G
Sbjct: 104 LVEIAKAVGADAVAHG 119


>gi|224437009|ref|ZP_03657990.1| argininosuccinate synthase [Helicobacter cinaedi CCUG 18818]
 gi|313143482|ref|ZP_07805675.1| argininosuccinate synthase [Helicobacter cinaedi CCUG 18818]
 gi|313128513|gb|EFR46130.1| argininosuccinate synthase [Helicobacter cinaedi CCUG 18818]
          Length = 401

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   +LK  G  Y+   VT                  G++V  AR 
Sbjct: 4   KKVVLAYSGGLDTSV---ILKWLGDNYNCEVVTF-----------TADIGQGEEVEPARA 49

Query: 79  VCDTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
               + +      + D  E F    + P           Y  G +    +   R      
Sbjct: 50  KALKLGIKSENIFIEDLREEFIKDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------ 103

Query: 129 LLSVTRQLGADVLATG 144
           L+ + + +GAD +A G
Sbjct: 104 LVEIAKAVGADAVAHG 119


>gi|254479264|ref|ZP_05092607.1| NAD synthase family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034802|gb|EEB75533.1| NAD synthase family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 543

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 44/189 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V+ +SGG+DS+VVA +     G + V+ +++                +   V DA  
Sbjct: 288 KKAVLGLSGGIDSAVVAVIASEALGKENVLAISM-----------PSRYSSEGSVKDAEI 336

Query: 79  VCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +   + +   V   E  F++  +V        A G+     V     ++ + L+    + 
Sbjct: 337 LAKNLGIDFRVIPIEPVFKSYLSVFNK--DGNALGDVAEENVQA--RIRGNYLMFFANRE 392

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G  VL TG                          + +    + T    +      +GD+ 
Sbjct: 393 GYVVLTTG-------------------------NKSELAMGYCTLYGDMSGSLAVIGDLY 427

Query: 197 KESVRDLAR 205
           K  V +LAR
Sbjct: 428 KTQVYELAR 436


>gi|210620566|ref|ZP_03292114.1| hypothetical protein CLOHIR_00057 [Clostridium hiranonis DSM 13275]
 gi|210155280|gb|EEA86286.1| hypothetical protein CLOHIR_00057 [Clostridium hiranonis DSM 13275]
          Length = 512

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D + +  +SGGVDSSV A L+ R  G ++  V     +     K +G      
Sbjct: 208 EIKEKVGDRKALCGLSGGVDSSVAAVLMHRAIGDNLTCVF---VDHGLLRKDEGD----- 259

Query: 72  DVYDARRVC-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              D  R+  D  +++    + E+RF + +                 +     ++     
Sbjct: 260 ---DVERIFRDKFDMNLIRVNAEDRFLSKLKGVTEPERKRK------IIGEEFIRV--FE 308

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDL 188
             + +LG  D L  G  I + +     G     +    +        +    +     ++
Sbjct: 309 EESEKLGKMDFLVQG-TIYADVIESGHGNGAATIKSHHN--------VGGLPEDVDFQEI 359

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+G+D
Sbjct: 360 IEPLRELFKDEVRRIGLELGID 381


>gi|255767161|ref|NP_388517.2| GMP synthase [Bacillus subtilis subsp. subtilis str. 168]
 gi|239938892|sp|P29727|GUAA_BACSU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225184788|emb|CAB12455.2| GMP synthetase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 513

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGTELGIP 382


>gi|82581174|emb|CAI12844.1| argininosuccinate synthetase [Agaricus bisporus]
 gi|82581176|emb|CAI12846.1| argininosuccinate synthetase [Agaricus bisporus]
          Length = 425

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 16/130 (12%)

Query: 18  PKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           P++  RV++A SGG+D+S + A L  +GY+V    +                  +D   A
Sbjct: 2   PENKGRVLLAYSGGLDTSCILAWLIEEGYEVYA-FMA------------DVGQEEDYAAA 48

Query: 77  RRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
            +    +     ++ D +  F   +I P   +    E          R V    ++ V  
Sbjct: 49  EQKALKVGAKKFFLADLKREFVTELIYPAVQANCIYENVYLLGTSLARPVIARGMIEVAD 108

Query: 135 QLGADVLATG 144
           + G D ++ G
Sbjct: 109 KEGCDYVSHG 118


>gi|51244755|ref|YP_064639.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Desulfotalea psychrophila LSv54]
 gi|81642722|sp|Q6APU2|GUAA_DESPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50875792|emb|CAG35632.1| probable GMP synthase [glutamine-hydrolyzing] [Desulfotalea
           psychrophila LSv54]
          Length = 516

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 42/210 (20%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKR 63
           N   + +   D  V+ A+SGGVDSSVVAA++ +  G  +  V      +++  S    K 
Sbjct: 209 NVAAIKEKVGDAHVICALSGGVDSSVVAAMIHKAIGSQLTCVYVNNGLMRIGESEGIIKF 268

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                    +                 D            F      G T       +  
Sbjct: 269 FKENTDLHLID---------------VDAS--------DYFLGK-LEGVTDPEVKRQHIG 304

Query: 124 VKF-SDLLSVTRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           + F         ++  D   LA G      +             R     +   + +   
Sbjct: 305 LGFIKIFEEEAHKIDGDVKFLAQGTLYPDVVESVS--------FRGAAPIKSH-HNVGCL 355

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                  L  PL ++ K+ VR+L  E+GL 
Sbjct: 356 PDIMKLSLIEPLRELFKDEVRELGVELGLP 385


>gi|157363094|ref|YP_001469861.1| GMP synthase [Thermotoga lettingae TMO]
 gi|157313698|gb|ABV32797.1| GMP synthase, large subunit [Thermotoga lettingae TMO]
          Length = 504

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 31/201 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +L ++    +VV A+SGGVDSSV   L+ R     IG  L          RK        
Sbjct: 201 ELREHLSGKKVVAALSGGVDSSVACVLVHRA----IGENLLNVFVDHGLLRKNEEEEVPR 256

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           +   R+V   + ++    D  + F      ++ P       GE                 
Sbjct: 257 I--FRQV---LGLNLLKIDARKVFLEKLRGIVDPEKKRKIIGEQF-----------IRVF 300

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               ++ GA  L  G      +     GK+   +    +        +    Q+   ++ 
Sbjct: 301 EKEAKRYGATHLIQGTIYSDVIESAKSGKKTAAIKSHHN--------VGGLPQRMDLEIV 352

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +   +G+ 
Sbjct: 353 EPLKNLFKDEVRIVGEMLGIP 373


>gi|88810769|ref|ZP_01126026.1| putative LPS biosynthesis protein WbpG [Nitrococcus mobilis Nb-231]
 gi|88792399|gb|EAR23509.1| putative LPS biosynthesis protein WbpG [Nitrococcus mobilis Nb-231]
          Length = 360

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ +SGGVDS+ VA L K+ G   + V     ++S               V +  +  D 
Sbjct: 59  VIGVSGGVDSTYVAYLTKQLGLRPLAVHFDNGWDSE------------FAVANIEKTLDR 106

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++    YV D+EE            S+    TP   V  +  +  + L  +  + G   
Sbjct: 107 LSIDLYTYVVDWEE------FKDLQLSFLKASTPDGEVPTDHAI-VALLYRMAAKYGVKH 159

Query: 141 LATG 144
           +  G
Sbjct: 160 ILLG 163


>gi|312128629|ref|YP_003993503.1| exsb protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778648|gb|ADQ08134.1| exsB protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 38/224 (16%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L   +  + MR VV +SGG+DS+ +   +K  GY+V  ++  LY               +
Sbjct: 5   LQRSEKLEKMRAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LY----------GQKHSK 53

Query: 72  DVYDARRVCDTINVSHYVFD---YEERFRNAVIVPFAS---SYAAGETPLPCVDCNRTVK 125
           ++  A++ C  +++ H + D   + E   +A+  P       Y    T    V  NR + 
Sbjct: 54  ELEFAKKTCSLLSIPHKIVDISFFAELAPSALTTPDWDVPEGYYTDSTMKQTVVPNRNM- 112

Query: 126 FSDLL----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              LL    +    LGA  L  G +        D  K    + +        + +L    
Sbjct: 113 --VLLSISAAYAISLGAKKLFYGAHAGDHPIYPDCRKEFVEVMK-------NALYLADYI 163

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG----LDIADKSDSQDIC 221
             +L     P  DMKKE +     E+G    L  +     Q  C
Sbjct: 164 GLELEA---PYVDMKKEDILRRGLELGVNYSLTWSCYKGGQKAC 204


>gi|284164051|ref|YP_003402330.1| GMP synthase, large subunit [Haloterrigena turkmenica DSM 5511]
 gi|284013706|gb|ADB59657.1| GMP synthase, large subunit [Haloterrigena turkmenica DSM 5511]
          Length = 305

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 69/190 (36%), Gaps = 38/190 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A+SGGVDSSV AAL     Y+ IG  L          RKG     ++ +D        
Sbjct: 25  VIALSGGVDSSVAAALA----YEAIGDRLTPVYVDTGLMRKGETDQIRETFDYME----- 75

Query: 84  NVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             S  + D ++RF  A   V  P       GE               +     +   AD 
Sbjct: 76  --SLRIVDAKDRFLEALAGVTDPEEKREIIGEQF-----------IREFEREAKDADADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G     R+   + G +       +    D               +  P+ D+ K+ V
Sbjct: 123 LVQGTIYPDRIES-EGGIKSHHNVGGLPEVVD------------FEGIVEPVRDLYKDEV 169

Query: 201 RDLAREMGLD 210
           R++AR +GLD
Sbjct: 170 REVARHLGLD 179


>gi|288931808|ref|YP_003435868.1| exsB protein [Ferroglobus placidus DSM 10642]
 gi|288894056|gb|ADC65593.1| exsB protein [Ferroglobus placidus DSM 10642]
          Length = 243

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 35/213 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR V+ +SGG+DSS +   L + GY+V  +T                   + V +A++V 
Sbjct: 1   MRGVLILSGGIDSSTLLYYLLKKGYEVHALTFYYGQRHSKEIEYS----KRIVEEAKKVG 56

Query: 81  DTINVSHYVFDYEERFR----------NAVIVPFASSYAAGETPLPCVDCNRTVK-FSDL 129
               V H V D                  V   F +      T +P    NR +   S  
Sbjct: 57  K---VEHKVVDISSIHELIAKGALTSDEDVPKAFYTEEVQRRTIVP----NRNMILLSIA 109

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                ++GA   A   Y   +         R+   + +D      Y     T  +L    
Sbjct: 110 AGYAVKIGA---AEVFYAAHKSDYSVYPDCRKEFVKALDTAL---YLGNLWTPVELRA-- 161

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
            P  DM K  +     ++GL++    +    C+
Sbjct: 162 -PFVDMTKAEIV----KLGLELKVPYEHTWSCY 189


>gi|255019822|ref|ZP_05291898.1| Argininosuccinate synthase [Acidithiobacillus caldus ATCC 51756]
 gi|254970751|gb|EET28237.1| Argininosuccinate synthase [Acidithiobacillus caldus ATCC 51756]
          Length = 399

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVV+A SGG+D+SV+   L+   Y    VT                  G+++  ARR  
Sbjct: 3   KRVVLAYSGGLDTSVILKWLQDQ-YQCEVVTF-----------TADIGQGEELEPARRKA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +     ++ D  + F    + P           Y  G +    +   R V       +
Sbjct: 51  EQLGAREVFIDDLRQEFVRDYVFPMFRANTVYEGEYLLGTSIARPLIAKRMV------EI 104

Query: 133 TRQLGADVLATG 144
             ++GAD +A G
Sbjct: 105 AAEVGADAVAHG 116


>gi|20807133|ref|NP_622304.1| NAD synthase [Thermoanaerobacter tengcongensis MB4]
 gi|20515628|gb|AAM23908.1| NAD synthase [Thermoanaerobacter tengcongensis MB4]
          Length = 543

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 44/189 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V+ +SGG+DS+VVA +     G + V+ +++                +   V DA  
Sbjct: 288 KKAVLGLSGGIDSAVVAVIASEALGKENVLAISM-----------PSRYSSEGSVKDAEI 336

Query: 79  VCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +   + +   V   E  F++  +V        A G+     V     ++ + L+    + 
Sbjct: 337 LAKNLGIDFRVIPIEPVFKSYLSVFNK--DGNALGDVAEENVQA--RIRGNYLMFFANRE 392

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G  VL TG                          + +    + T    +      +GD+ 
Sbjct: 393 GYVVLTTG-------------------------NKSELAMGYCTLYGDMSGSLAVIGDLY 427

Query: 197 KESVRDLAR 205
           K  V +LAR
Sbjct: 428 KTQVYELAR 436


>gi|56751331|ref|YP_172032.1| GMP synthase [Synechococcus elongatus PCC 6301]
 gi|81595982|sp|Q5N2F8|GUAA_SYNP6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56686290|dbj|BAD79512.1| GMP synthetase [Synechococcus elongatus PCC 6301]
          Length = 534

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL R     IG  L      +   RKG      +V++    
Sbjct: 230 DKRVLLALSGGVDSSTLAFLLHRA----IGDQLTCMFIDQGFMRKGEPERLMEVFN---- 281

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +   +        +RF   +                    +  ++       +R+LG  
Sbjct: 282 -EKFKIHVEYIQARDRFLQRLEGITDPEEKRKR------IGHEFIRV--FEEESRRLGPF 332

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D     +   R     +            Q   L  PL  + K+
Sbjct: 333 DYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSHHNVGGLPKDLQF-KLVEPLRRLFKD 391

Query: 199 SVRDLAREMGLD 210
            VR + R +GL 
Sbjct: 392 EVRQVGRSLGLP 403


>gi|15602158|ref|NP_245230.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|24211768|sp|Q9CNX8|GUAA_PASMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|12720526|gb|AAK02377.1| GuaA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 523

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 41/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSV A LL R  G ++  V      L+L  + +  +  G        
Sbjct: 225 DDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEAEQVMEMFG-------- 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLS 131
                  D   ++      E+RF +A+               P        K        
Sbjct: 277 -------DKFGLNIIHVKAEDRFLDALKG--IDE--------PEAKRKMIGKVFVDVFDD 319

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +++L     LA G      +        +  + +           +          L  
Sbjct: 320 ESKKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDYMKLGLVE 372

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +   +GL 
Sbjct: 373 PLRELFKDEVRKIGLALGLP 392


>gi|327332315|gb|EGE74051.1| GMP synthase [Propionibacterium acnes HL097PA1]
          Length = 517

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAGQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|325109160|ref|YP_004270228.1| hypothetical protein Plabr_2606 [Planctomyces brasiliensis DSM
           5305]
 gi|324969428|gb|ADY60206.1| Conserved hypothetical protein CHP00268 [Planctomyces brasiliensis
           DSM 5305]
          Length = 277

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 60/199 (30%), Gaps = 41/199 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV VA S GVDS+V    L +         +   +   A        A   + +A  
Sbjct: 18  RSGRVAVAFSAGVDSTV----LCQA------ARMACGDDAIAVIADSPSLATGVLEEAEE 67

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   I +  +V    E F           Y A      C  C        L +   QL A
Sbjct: 68  LAKQIRIPLHVV-RTEEFAR-------PEYQA-NAGNRCFYCK-----DTLYTAVEQLHA 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D+      I +     D G  R  M                   Q L    F    + K 
Sbjct: 114 DLKFD--VIVNGANTDDLGDYRPGMQAAA-------------NHQVLSP--FVECGIGKA 156

Query: 199 SVRDLAREMGLDIADKSDS 217
            +R LA+   L + DK  S
Sbjct: 157 EIRQLAKSWDLPVWDKPAS 175


>gi|194476897|ref|YP_002049076.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paulinella chromatophora]
 gi|171191904|gb|ACB42866.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paulinella chromatophora]
          Length = 527

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 27/195 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDA 76
            RV++A+SGGVDSS +A LL +        T++         +   RKG      D +D 
Sbjct: 224 KRVLLALSGGVDSSTLAFLLHK--------TIRNQLTCMFIDQGFMRKGEPEFLMDFFD- 274

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                  N+     +  ERF   +   F             +     ++       ++ L
Sbjct: 275 ----RKFNLKVQYINARERFIEKLRGIFDPEEKRR------IIGTEFIRV--FEEESKLL 322

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D LA G      +         +   R     +            Q   L  PL  +
Sbjct: 323 GPFDYLAQGTLYPDVIESAGTNLDPKTGERVAVKIKSHHNVGGLPKDLQF-KLVEPLRRL 381

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + R +GL 
Sbjct: 382 FKDEVRRVGRSLGLP 396


>gi|295106574|emb|CBL04117.1| NAD+ synthetase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 272

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 43/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DSS+VA +     G D V GV L            G   +   V DAR +  
Sbjct: 27  VIGLSGGMDSSIVAVMCVDAFGADHVHGVLL-----------PGPYSSEHSVEDARELAG 75

Query: 82  TINVSHYVFDYEERFR--NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +   V    E +     V+        AG       +     +   L++++   G  
Sbjct: 76  NLGIEAQVVSVCEPYEAFERVLARACGGELAGLAAE---NTQARCRMVCLMALSNAYGWM 132

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TG                          + ++   ++T          PLG + K  
Sbjct: 133 LVNTG-------------------------NKSEAMMGYSTLYGDTAGAFAPLGGLYKTD 167

Query: 200 VRDLAREMG 208
           V  +AR   
Sbjct: 168 VYAVARWRN 176


>gi|296130694|ref|YP_003637944.1| NAD+ synthetase [Cellulomonas flavigena DSM 20109]
 gi|296022509|gb|ADG75745.1| NAD+ synthetase [Cellulomonas flavigena DSM 20109]
          Length = 621

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++ A +     G D V GV +            G   +G  V DAR + 
Sbjct: 325 VVLGLSGGIDSALAATIAVDALGPDAVWGVGM-----------PGPYSSGGSVDDARALA 373

Query: 81  DTINVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD--LLSVTRQL 136
           D + +   V    + +  R+ V+    +    G T  P    N   +     L+++    
Sbjct: 374 DNLGIRFDVVPITDAYLERHRVLAGLLTD-RTGATGQPVAWENLQARLRGTTLMTLANAT 432

Query: 137 GA 138
           GA
Sbjct: 433 GA 434


>gi|123965271|ref|YP_001010352.1| GMP synthase [Prochlorococcus marinus str. MIT 9515]
 gi|226739663|sp|A2BTY4|GUAA_PROM5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123199637|gb|ABM71245.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 528

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 35/200 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++A+SGGVDSS +A LL +     IG  L      +   RKG      + +     
Sbjct: 224 DKKVLLALSGGVDSSTLAFLLNKA----IGKQLTCMFIDQGFMRKGEPEFLMEFF----- 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQ 135
               ++     +  ERF +            G T     +  R +   + +      + +
Sbjct: 275 AKKFHIKVEYINARERFLHK---------LNGVT---DPEEKRKIIGGEFIRVFEEESHR 322

Query: 136 LG-ADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           LG  + LA        I S     D     RI  +           +    +     L  
Sbjct: 323 LGPFEYLAQGTLYPDVIESAGTNLDPKTGERIAVKIKSHHN-----VGGLPKDLQFKLVE 377

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L   +GL 
Sbjct: 378 PLRKLFKDEVRKLGNALGLP 397


>gi|255994856|ref|ZP_05427991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Eubacterium saphenum ATCC 49989]
 gi|255993569|gb|EEU03658.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Eubacterium saphenum ATCC 49989]
          Length = 351

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +VVV +SGG DS  VA L  L   GYD I V +              C +  D   AR
Sbjct: 21 QDKVVVGLSGGPDS--VALLHCLNELGYDCIAVHI--------DHSLRGCESDGDAEFAR 70

Query: 78 RVCDTINVSHYVFDY 92
            C   ++   +F +
Sbjct: 71 TFCHDRDIPFKMFKF 85


>gi|167746732|ref|ZP_02418859.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662]
 gi|167653692|gb|EDR97821.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662]
          Length = 244

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 22/131 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYD 75
           +  ++ V +SGG DS  +   L           L+++   K      +        D+  
Sbjct: 22  EGDKIAVGISGGKDSLTMLYAL---------AHLRIFYPNKFEIHGITVDLGFGNFDITQ 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             ++C+ + V + V   +    + V           ET  PC  C +  K   L    ++
Sbjct: 73  VEKLCEELKVPYTVV--KTEIADVVFE------RRKET-NPCSLCAKMRK-GALNEKIKE 122

Query: 136 LGADVLATGHY 146
           LG + +A  H+
Sbjct: 123 LGCNKVAYAHH 133


>gi|123967573|ref|YP_001008431.1| GMP synthase [Prochlorococcus marinus str. AS9601]
 gi|226739665|sp|A2BNG3|GUAA_PROMS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123197683|gb|ABM69324.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. AS9601]
          Length = 528

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D    
Sbjct: 224 NKKVLLALSGGVDSSTLAFLLNKA----IGNQLTCMFIDQGFMRKGEPEFLMNFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++     +  ERF              G T     +  R +            + +
Sbjct: 276 -KKFHIKVEYINARERFIAK---------LKGIT---DPEQKRKIIGEEFIRVFEEESNR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG    LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFQYLAQGTLYPDVIESAGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR +   +GL 
Sbjct: 381 KLFKDEVRKVGAALGLP 397


>gi|313204026|ref|YP_004042683.1| gmp synthase (glutamine-hydrolyzing) [Paludibacter propionicigenes
           WB4]
 gi|312443342|gb|ADQ79698.1| GMP synthase (glutamine-hydrolyzing) [Paludibacter propionicigenes
           WB4]
          Length = 505

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L K   D +VV+A+SGGVDSSV A LL +  G ++  V                     
Sbjct: 204 ELKKQLGDDKVVLALSGGVDSSVAAVLLNKAIGKNLTCVF-----------VDHGLLRKN 252

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
           +  +  R  + + ++    + +ERF  A
Sbjct: 253 EFENVMRDYEHLGLNVIGVNVKERFYKA 280


>gi|302388936|ref|YP_003824757.1| GMP synthase (glutamine-hydrolyzing) [Thermosediminibacter oceani
           DSM 16646]
 gi|302199564|gb|ADL07134.1| GMP synthase (glutamine-hydrolyzing) [Thermosediminibacter oceani
           DSM 16646]
          Length = 511

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 46/201 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R + A+SGGVDSSV A +  R  G ++  +                        +AR+
Sbjct: 216 NGRALCALSGGVDSSVAAVITHRALGDNLTCIF--------------VDHGLLRKDEARK 261

Query: 79  VC----DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLL 130
           V     D  +++    D  +RF              G T     +  R +          
Sbjct: 262 VIETFKDKFHINLIAVDASDRFLKR---------LEGVT---DPEAKRRIIGEEFIRVFE 309

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++LG  D L  G        V + G +   + +           +    Q    +L 
Sbjct: 310 DEAKKLGKIDFLVQG---TLYPDVIESGTQTAAVIKTHHN-------VGGLPQDLNFELI 359

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR +  ++GL 
Sbjct: 360 EPLRDLFKDEVRKVGLQLGLP 380


>gi|294784941|ref|ZP_06750229.1| GMP synthase [Fusobacterium sp. 3_1_27]
 gi|294486655|gb|EFG34017.1| GMP synthase [Fusobacterium sp. 3_1_27]
          Length = 512

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 68/202 (33%), Gaps = 46/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A L+ +  G  +  +                     +      
Sbjct: 215 NKKVILGLSGGVDSSVAATLINKAIGKQLTCIF-----------VDTGLLRKDEAKQVME 263

Query: 79  V-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----T 133
           V     +++    + EERF             AG T     +  R +   + + V     
Sbjct: 264 VYAKNFDMNIKCINAEERFLTK---------LAGIT---DPETKRKIIGKEFVEVFNEEA 311

Query: 134 RQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +++ GA  LA        I S    G     +         E            + L   
Sbjct: 312 KRIEGAKFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLKFELLE-- 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 362 --PLRELFKDEVRKVGRELGIP 381


>gi|239940020|ref|ZP_04691957.1| argininosuccinate synthase [Streptomyces roseosporus NRRL 15998]
 gi|239986503|ref|ZP_04707167.1| argininosuccinate synthase [Streptomyces roseosporus NRRL 11379]
 gi|291443447|ref|ZP_06582837.1| argininosuccinate synthase ArgG [Streptomyces roseosporus NRRL
           15998]
 gi|291346394|gb|EFE73298.1| argininosuccinate synthase ArgG [Streptomyces roseosporus NRRL
           15998]
          Length = 398

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   + A      P V   +R      L++   +  A
Sbjct: 52  LACGAVEAEVADAKDEFAEEYCLPAIKANALYMDRYPLVSALSRPTIVKHLVAAAHKHNA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM-- 195
            ++A G                   C       DQ  F    +          P+ D   
Sbjct: 112 GIVAHG-------------------CTGK--GNDQVRFEAGISALGPDLKCIAPVRDYAM 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++       E  L IA    S
Sbjct: 151 TRDKAIAFCEEKNLPIATTKKS 172


>gi|56418789|ref|YP_146107.1| GMP synthase [Geobacillus kaustophilus HTA426]
 gi|261418575|ref|YP_003252257.1| GMP synthase [Geobacillus sp. Y412MC61]
 gi|319765390|ref|YP_004130891.1| GMP synthase, large subunit [Geobacillus sp. Y412MC52]
 gi|81348285|sp|Q5L3E1|GUAA_GEOKA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56378631|dbj|BAD74539.1| GMP synthetase (glutamine amidotransferase) [Geobacillus
           kaustophilus HTA426]
 gi|261375032|gb|ACX77775.1| GMP synthase, large subunit [Geobacillus sp. Y412MC61]
 gi|317110256|gb|ADU92748.1| GMP synthase, large subunit [Geobacillus sp. Y412MC52]
          Length = 510

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 215 GKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------AES 260

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E+F+  VI       F +       P     +  N  +  F D  
Sbjct: 261 VMKT---------FREQFQMNVIKVDAKDRFLAKLKGVTDPEQKRKIIGNEFIYVFDD-- 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +    +L  
Sbjct: 310 EAAKLEGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFELIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  ++G+ 
Sbjct: 360 PLNTLFKDEVRALGTQLGIP 379


>gi|315427301|dbj|BAJ48912.1| transcription regulator ExsB related protein [Candidatus
           Caldiarchaeum subterraneum]
 gi|315428195|dbj|BAJ49779.1| transcription regulator ExsB related protein [Candidatus
           Caldiarchaeum subterraneum]
          Length = 216

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 28/200 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL----QLYNSRKASKR--KGSCCAGQDVY 74
           M++V  +SGG+DS+V+   L+ +G+ ++ +TL    +     +A+K+  K +      VY
Sbjct: 1   MKIVALVSGGIDSTVMLWKLRSEGHSILPLTLLTFRRNPREIEAAKKISKAASGREPIVY 60

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   + +  +   ++       +  V   F S       P   +     + +S    V  
Sbjct: 61  DVSFLRELYDYPQHI-------KERVFQQFPSL------PNIVIPYRNIIFYSVAAYVAC 107

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              A+ +A GH       + D G+         DLE+     L  +T      +  P+  
Sbjct: 108 HEAAEAIAGGHTREDMERIPDVGEEFF-----ADLEK----ILNKSTPFHRVKILTPVAG 158

Query: 195 MKKESVRDLAREMGLDIADK 214
           + K  +  L  E+G  I + 
Sbjct: 159 LWKPEIMRLGVELGAPIGET 178


>gi|258646844|ref|ZP_05734313.1| argininosuccinate synthase [Dialister invisus DSM 15470]
 gi|260404282|gb|EEW97829.1| argininosuccinate synthase [Dialister invisus DSM 15470]
          Length = 414

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK + Y  +VI  T+ L                + +     
Sbjct: 5   KKVVLAYSGGLDTSVIIPWLKEN-YNCEVIACTINLGQPEDFDAI-----HEKALKSGAS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIV---PFASSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
           V +T++V      + E +   V+     +   Y  G +   P +          L+ + +
Sbjct: 59  VAETLDVRRE---FIEEYAYKVLQAGGRYEGRYLLGTSFARPLIG-------KCLVDMAK 108

Query: 135 QLGADVLATG 144
           + GAD +  G
Sbjct: 109 KYGADAICHG 118


>gi|255994274|ref|ZP_05427409.1| GMP synthase domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993942|gb|EEU04031.1| GMP synthase domain protein [Eubacterium saphenum ATCC 49989]
          Length = 326

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
          RV++A+SGGVDSSVVAALL +  G  +IGV 
Sbjct: 38 RVLLALSGGVDSSVVAALLIKAVGDQLIGVH 68


>gi|322381177|ref|ZP_08055180.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154753|gb|EFX47024.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 479

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 30/154 (19%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLK-------RDGYDVIGVTLQ 53
           MV+ +  + N  + +       VVVA+SGG DS    ALL          G+ VI   + 
Sbjct: 1   MVLLDKIKQNIHEQNLFQGGDTVVVAVSGGPDS---IALLHMLYRLSDEQGWKVIAAHV- 56

Query: 54  LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
            +  RK           ++          + +   V          VI     +Y    +
Sbjct: 57  NHQFRKEES-------AEEAKYVMSFASGLGIPCEV---------GVID--VPAYIRETS 98

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
             P V   R  ++  L  +     AD +A  H+ 
Sbjct: 99  LNPQVAA-REKRYEFLHKIANVYNADKIALAHHA 131


>gi|326774070|ref|ZP_08233352.1| GMP synthase (Glutamine amidotransferase) [Actinomyces viscosus
           C505]
 gi|326636209|gb|EGE37113.1| GMP synthase (Glutamine amidotransferase) [Actinomyces viscosus
           C505]
          Length = 528

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 43/204 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D  V+  +SGGVDSSV AAL+ R     IG  +T    +       +             
Sbjct: 223 DAHVICGLSGGVDSSVAAALVHRA----IGDQLTCIFVDHGLLRAGEREQVEHDY----- 273

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTR 134
              + + +     D  ERF NA          AG T  P  +  R +   +        +
Sbjct: 274 --AEGMGIRVITVDETERFLNA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQ 319

Query: 135 QLGADVL-ATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +   + + A G  IR  +        V   G       +           +    +    
Sbjct: 320 RRVIEAVGAEGGEIRFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLDF 372

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  PL ++ K+ VR + RE+G+ 
Sbjct: 373 ELIEPLRELFKDEVRAIGRELGVP 396


>gi|251772322|gb|EES52890.1| Argininosuccinate synthase [Leptospirillum ferrodiazotrophum]
          Length = 411

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 26/133 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV+A SGG+D+SV    LK+  G +VI                  C       D   
Sbjct: 13  PKRVVLAYSGGLDTSVAIVWLKKTYGCEVIC----------------YCADLGQGEDLDA 56

Query: 79  VCDTINVS----HYVFDYEERFRNAVIVPFASS---YAAGETPLPCVDCNRTVKFSDLLS 131
           V      S      V D  E F    I P  +S   Y  G      +   R +     + 
Sbjct: 57  VAKKARASGASDVVVVDLRESFVREFIFPMIASGAVYEDGYLLGTSIA--RPLIARAQME 114

Query: 132 VTRQLGADVLATG 144
           + R+ GAD +A G
Sbjct: 115 IARERGADAVAHG 127


>gi|305667734|ref|YP_003864021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Maribacter sp. HTCC2170]
 gi|88707571|gb|EAQ99813.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Maribacter sp. HTCC2170]
          Length = 510

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 64/203 (31%), Gaps = 34/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +L K   D +V++ +SGGVDS+V A LL +     IG  L          RK        
Sbjct: 206 ELKKKIGDDKVILGLSGGVDSTVAAILLHKA----IGKHLHCIFVNNGLLRKNE------ 255

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D     + + ++    D   RF +A          AGE+     +  R +     + V
Sbjct: 256 FQDVLDQYEHMGLNVKGVDASARFLDA---------LAGES---DPEKKRKIIGKVFIDV 303

Query: 133 TRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                     A  LA G      +             +           +          
Sbjct: 304 FDDESHMVEDAKWLAQGTIYPDVIESVSATGGPSATIKSHHN-------VGGLPDFMKLK 356

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL  + K+ VR +   M +D
Sbjct: 357 VVEPLKMLFKDEVRRVGASMNID 379


>gi|296330093|ref|ZP_06872575.1| GMP synthase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673338|ref|YP_003865010.1| GMP synthase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152682|gb|EFG93549.1| GMP synthase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411582|gb|ADM36701.1| GMP synthase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 513

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGTELGIP 382


>gi|294674357|ref|YP_003574973.1| GMP synthase (glutamine-hydrolyzing) [Prevotella ruminicola 23]
 gi|294473645|gb|ADE83034.1| GMP synthase (glutamine-hydrolyzing) [Prevotella ruminicola 23]
          Length = 534

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 41/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++ +SGGVDSSV A LL +  G  +  +     +     K + +      V D  +
Sbjct: 211 DDRVILGLSGGVDSSVAAVLLNKAIGNRLTCIF---VDHGMLRKNEFN-----QVMDDYK 262

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
           V   + ++    D   +F             AG T     +  R +   D + V     +
Sbjct: 263 V---LGLNVIGVDASAKFFAD---------LAGVT---DPEQKRKIIGRDFVEVFNAEAK 307

Query: 135 QL-GADVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++  A  LA G     R+   +  GK  +               +    ++    L  PL
Sbjct: 308 KITDAKWLAQGTIYPDRIESLNITGKVIKSHHN-----------VGGLPKEMHLQLCEPL 356

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR + R++G+ 
Sbjct: 357 QWLFKDEVRRVGRQLGMP 374


>gi|254500493|ref|ZP_05112644.1| argininosuccinate synthase [Labrenzia alexandrii DFL-11]
 gi|222436564|gb|EEE43243.1| argininosuccinate synthase [Labrenzia alexandrii DFL-11]
          Length = 406

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQTELGCEVVTFT-------------ADLGQGEELEPARKK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + + +   YV D  E F    + P   +       Y  G +    +   R      L+ 
Sbjct: 54  AEMMGIKEIYVDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKR------LIE 107

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 108 IAEETGADAVAHG 120


>gi|118465513|ref|YP_882296.1| argininosuccinate synthase [Mycobacterium avium 104]
 gi|254775563|ref|ZP_05217079.1| argininosuccinate synthase [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166220990|sp|A0QHA8|ASSY_MYCA1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118166800|gb|ABK67697.1| argininosuccinate synthase [Mycobacterium avium 104]
          Length = 398

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +  +         D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEDMEVIRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L++  R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTIRNNALYMDRYPLVSAISRPLIVKHLVAAAREHGGS 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|328756383|gb|EGF69999.1| GMP synthase protein [Propionibacterium acnes HL020PA1]
          Length = 517

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|167465338|ref|ZP_02330427.1| tRNA(Ile)-lysidine synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 424

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 30/154 (19%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLK-------RDGYDVIGVTLQ 53
           MV+ +  + N  + +       VVVA+SGG DS    ALL          G+ VI   + 
Sbjct: 1   MVLLDKIKQNIHEQNLFQGGDTVVVAVSGGPDS---IALLHMLYRLSDEQGWKVIAAHV- 56

Query: 54  LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
            +  RK           ++          + +   V          VI     +Y    +
Sbjct: 57  NHQFRKEES-------AEEAKYVMSFASGLGIPCEV---------GVID--VPAYIRETS 98

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
             P V   R  ++  L  +     AD +A  H+ 
Sbjct: 99  LNPQVAA-REKRYEFLHKIANVYNADKIALAHHA 131


>gi|322368202|ref|ZP_08042771.1| argininosuccinate synthase [Haladaptatus paucihalophilus DX253]
 gi|320552218|gb|EFW93863.1| argininosuccinate synthase [Haladaptatus paucihalophilus DX253]
          Length = 389

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 20/150 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             V +A SGG+D++V   LL+ + GYD VIGVT+ +    +                   
Sbjct: 2   KTVALAFSGGLDTTVCVPLLEEEYGYDDVIGVTVDVGQPEEEFAEAEETAEA-------- 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +++ HYV D ++ F    +    ++      PL      R V    +L V ++   
Sbjct: 54  ----LDLDHYVVDAKDAFAEQCLDAVKANATYQSYPLGTALA-RPVIAEAILDVAKENDC 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168
           D +A G         G+D  R   + R  D
Sbjct: 109 DAVAHG-----CTGKGNDQLRFEAVWRASD 133


>gi|317012818|gb|ADU83426.1| GMP synthase [Helicobacter pylori Lithuania75]
          Length = 508

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F + +       +     GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPEWKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|312793609|ref|YP_004026532.1| gmp synthase, large subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180749|gb|ADQ40919.1| GMP synthase, large subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 511

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 37/196 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV A+SGGVDSSV A L+ +     IG  L          RKG       ++      
Sbjct: 216 QKVVCALSGGVDSSVAAVLVHKA----IGKNLYCIFVDHGLLRKGEADEVMSIFK----- 266

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           D  +++    D ++RF  A           G T     +  R +              +L
Sbjct: 267 DQFDMNVIKVDAKDRFLEA---------LRGVT---DPEEKRKIIGREFIRVFEEEAEKL 314

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLGD 194
           G    L  G        V + G  +    +           +    Q+ +   +  PL +
Sbjct: 315 GDIKFLVQG---TIYPDVVESGVGKAATIKSHHN-------VGGLPQKIKFEKIIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+G+ 
Sbjct: 365 LFKDEVRRVGIELGIP 380


>gi|302553630|ref|ZP_07305972.1| GMP synthase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471248|gb|EFL34341.1| GMP synthase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 526

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 69/193 (35%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 224 DRRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D EERF                  +   +  R +   + + V  Q  A
Sbjct: 275 VAAT-GVQLKVVDAEERF------------LKALAGVSDPEEKRKIIGREFIRVFEQAQA 321

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           +++A        L  G                  +S + +    +     L  PL  + K
Sbjct: 322 EIIADQGPAVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFKLIEPLRKLFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 382 DEVRMVGQELGLP 394


>gi|254474771|ref|ZP_05088157.1| argininosuccinate synthase [Ruegeria sp. R11]
 gi|214029014|gb|EEB69849.1| argininosuccinate synthase [Ruegeria sp. R11]
          Length = 408

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELDPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
             + + +     Y+ D  E F    + P           Y  G +    +   R      
Sbjct: 51  KAEMLGIKPENIYIEDVREEFVRDFVFPMFRGNALYEGEYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  + GAD +A G
Sbjct: 105 LVEIAAETGADAVAHG 120


>gi|170746885|ref|YP_001753145.1| GMP synthase [Methylobacterium radiotolerans JCM 2831]
 gi|170653407|gb|ACB22462.1| GMP synthase, large subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 518

 Score = 53.6 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 60/197 (30%), Gaps = 39/197 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V A L+    G  +  V                      + +A +V 
Sbjct: 222 KVICGLSGGVDSAVAAVLIHEAIGDQLTCVF--------------VDHGLLRLGEAEQVV 267

Query: 81  ----DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               D  N+     +    F      V  P       G      V    + K        
Sbjct: 268 ALFRDHYNIPLVHVEASGMFLAALEGVSDPEIKRKTIGRLF-IDVFEAESKKIG------ 320

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              GA  LA G      +          +  +           +    ++    L  PL 
Sbjct: 321 ---GAKFLAQGTLYPDVIESVSFTGGPSVTIKSHHN-------VGGLPERMNMKLVEPLR 370

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L +E+GL 
Sbjct: 371 ELFKDEVRVLGKELGLP 387


>gi|313773174|gb|EFS39140.1| GMP synthase protein [Propionibacterium acnes HL074PA1]
 gi|313810468|gb|EFS48182.1| GMP synthase protein [Propionibacterium acnes HL083PA1]
 gi|313812197|gb|EFS49911.1| GMP synthase protein [Propionibacterium acnes HL025PA1]
 gi|313817918|gb|EFS55632.1| GMP synthase protein [Propionibacterium acnes HL046PA2]
 gi|313819831|gb|EFS57545.1| GMP synthase protein [Propionibacterium acnes HL036PA1]
 gi|313823321|gb|EFS61035.1| GMP synthase protein [Propionibacterium acnes HL036PA2]
 gi|313824795|gb|EFS62509.1| GMP synthase protein [Propionibacterium acnes HL063PA1]
 gi|313830153|gb|EFS67867.1| GMP synthase protein [Propionibacterium acnes HL007PA1]
 gi|313833132|gb|EFS70846.1| GMP synthase protein [Propionibacterium acnes HL056PA1]
 gi|314925824|gb|EFS89655.1| GMP synthase protein [Propionibacterium acnes HL036PA3]
 gi|314960768|gb|EFT04869.1| GMP synthase protein [Propionibacterium acnes HL002PA2]
 gi|314972998|gb|EFT17094.1| GMP synthase protein [Propionibacterium acnes HL053PA1]
 gi|314975612|gb|EFT19707.1| GMP synthase protein [Propionibacterium acnes HL045PA1]
 gi|314979811|gb|EFT23905.1| GMP synthase protein [Propionibacterium acnes HL072PA2]
 gi|314984804|gb|EFT28896.1| GMP synthase protein [Propionibacterium acnes HL005PA1]
 gi|314986155|gb|EFT30247.1| GMP synthase protein [Propionibacterium acnes HL005PA2]
 gi|314988768|gb|EFT32859.1| GMP synthase protein [Propionibacterium acnes HL005PA3]
 gi|315079971|gb|EFT51947.1| GMP synthase protein [Propionibacterium acnes HL078PA1]
 gi|315083298|gb|EFT55274.1| GMP synthase protein [Propionibacterium acnes HL027PA2]
 gi|315086929|gb|EFT58905.1| GMP synthase protein [Propionibacterium acnes HL002PA3]
 gi|315090020|gb|EFT61996.1| GMP synthase protein [Propionibacterium acnes HL072PA1]
 gi|315096658|gb|EFT68634.1| GMP synthase protein [Propionibacterium acnes HL038PA1]
 gi|327325073|gb|EGE66879.1| GMP synthase [Propionibacterium acnes HL096PA3]
 gi|327325300|gb|EGE67105.1| GMP synthase [Propionibacterium acnes HL096PA2]
 gi|327444103|gb|EGE90757.1| GMP synthase protein [Propionibacterium acnes HL043PA1]
 gi|327447533|gb|EGE94187.1| GMP synthase protein [Propionibacterium acnes HL043PA2]
 gi|327449272|gb|EGE95926.1| GMP synthase protein [Propionibacterium acnes HL013PA2]
 gi|328761283|gb|EGF74810.1| GMP synthase [Propionibacterium acnes HL099PA1]
          Length = 517

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|303327373|ref|ZP_07357814.1| argininosuccinate synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302862313|gb|EFL85246.1| argininosuccinate synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 401

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 72/233 (30%), Gaps = 56/233 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L    + +VI  T  L      S  +               
Sbjct: 5   KKVVLAYSGGLDTSVILKWLIETYHCEVITCTADLGQPEDLSGVEEKALKTGASKA---- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
                   YV D  E      + P     A  E          R      L+ + R+ GA
Sbjct: 61  --------YVVDLREEMARDFVFPMMRGAARYENRYMLGTSIARPCITKALIDIARKEGA 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D +A G                           DQ  F F+           P       
Sbjct: 113 DAIAHG---------------------ATGKGNDQVRFEFS------AKALAP------- 138

Query: 199 SVRDLA--REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
            +R +A  RE  L     S +    F +  K+   + +     +++ +++H +
Sbjct: 139 EIRVIAPWREWDL----MSRTALTAFAE--KHGIFISKEAKRYSMDANMLHTS 185


>gi|297625877|ref|YP_003687640.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921642|emb|CBL56199.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 517

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDS+V AAL++R  G  +    +          RKG     +  +D  +
Sbjct: 217 DKRVLCALSGGVDSAVAAALVQRAIGDQLTCCFI-----DHGLLRKGEAEQVK--HDFVQ 269

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +     V   V D  ERF +A   V  P A     G                    V RQ
Sbjct: 270 IT---GVDLVVADESERFLSALAGVSEPEAKRKIIGREF-----------IRSFEDVARQ 315

Query: 136 L----GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +    G D L  G      +  G  G       +           +          L  P
Sbjct: 316 IAGDKGIDFLVQGTLYPDVVESG--GGDGAANIKSHHN-------VGGLPDDLQFTLIEP 366

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR +  E+GL 
Sbjct: 367 LRALFKDEVRAVGAELGLP 385


>gi|260886986|ref|ZP_05898249.1| PP-loop family protein [Selenomonas sputigena ATCC 35185]
 gi|330839229|ref|YP_004413809.1| Conserved hypothetical protein CHP00268 [Selenomonas sputigena ATCC
           35185]
 gi|260863048|gb|EEX77548.1| PP-loop family protein [Selenomonas sputigena ATCC 35185]
 gi|329746993|gb|AEC00350.1| Conserved hypothetical protein CHP00268 [Selenomonas sputigena ATCC
           35185]
          Length = 278

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 52/217 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            VA+SGGVDS+V   LL       G               A        A  ++ DA+R 
Sbjct: 27  AVALSGGVDSAV---LLMAAVRTLG----------AAHVAAVTAASELLAEGELEDAKRC 73

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                V   +   ++     V                C  C +  +F  L++  ++ G  
Sbjct: 74  ASLAGVPLTILPADDLASPDVARNDERR---------CYYCKKR-RFEMLIAWAKEHGFR 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKK 197
            +  G          DD    R     ++     + F+ +           PL +    K
Sbjct: 124 RVLDGTNA-------DDAGDYRPGLAAIEEL---APFVAS-----------PLKEARWTK 162

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             +R+ A+  G+ +  K  +   C   + +Y   + R
Sbjct: 163 CDIREAAKAWGVPVWSKPSA--ACLASRVEYGVELTR 197


>gi|254429426|ref|ZP_05043133.1| argininosuccinate synthase [Alcanivorax sp. DG881]
 gi|196195595|gb|EDX90554.1| argininosuccinate synthase [Alcanivorax sp. DG881]
          Length = 407

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVKWLQDT-YDCEVVTF-----------TADIGQGEEVEPARAKAE 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 EETGADAISHG 118


>gi|148653456|ref|YP_001280549.1| argininosuccinate synthase [Psychrobacter sp. PRwf-1]
 gi|172048538|sp|A5WG08|ASSY_PSYWF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|148572540|gb|ABQ94599.1| argininosuccinate synthase [Psychrobacter sp. PRwf-1]
          Length = 411

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+S++A  L+   YD   +T                  G++V  AR   +
Sbjct: 11  KIVLAYSGGLDTSIIAKWLQDT-YDAEVITF-----------TADIGQGEEVEPARAKAE 58

Query: 82  TINVSH-YVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + + H ++ D    F    + P           Y  G +    +   R      L+ + 
Sbjct: 59  AMGIKHIHIEDLRAEFARDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 112

Query: 134 RQLGADVLATG 144
           ++  AD ++ G
Sbjct: 113 KEHNADAISHG 123


>gi|330995299|ref|ZP_08319209.1| GMP synthase domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329575794|gb|EGG57318.1| GMP synthase domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 525

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 43/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++ +SGGVDSSV A LL +  G ++  +     +     K +        ++D   
Sbjct: 231 DDRVILGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNE----FKNVLHDY-- 281

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             + + ++    D   +F              G T     +  R +   D + V     R
Sbjct: 282 --ECLGLNVIGVDASAKFFKD---------LEGVT---DPEQKRKIIGRDFVEVFDAEAR 327

Query: 135 QL-GADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           ++  A  LA G  +  R           +                +    ++    L  P
Sbjct: 328 KITDAKWLAQGTIYPDRIESLNITGKTIKSHHN------------VGGLPEEMNLQLCEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + R+MG+ 
Sbjct: 376 LKWLFKDEVRRVGRQMGMP 394


>gi|34498920|ref|NP_903135.1| GMP synthase [Chromobacterium violaceum ATCC 12472]
 gi|44887934|sp|Q7NSG1|GUAA_CHRVO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34104769|gb|AAQ61126.1| GMP synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 525

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 223 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGKMVMEMF-------AQ 272

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG--- 137
            + V       E  F             AGET     +  R +  ++ +    R+ G   
Sbjct: 273 NLGVKVVHVQAEADFMAK---------LAGET---DPEKKRKIIGAEFIEVFDRESGKLT 320

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +       ++    +           +    +     L  PL ++ 
Sbjct: 321 NAKWLAQGTIYPDVIESAGAKTKKAHTIKSHHN-------VGGLPEDMNLKLLEPLRELF 373

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 374 KDEVRQLGVALGLP 387


>gi|325962881|ref|YP_004240787.1| argininosuccinate synthase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468968|gb|ADX72653.1| argininosuccinate synthase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 401

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 63/202 (31%), Gaps = 43/202 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    +    G +VI V             +G          A    
Sbjct: 4   RIVLAYSGGLDTSVAIGWIGEATGAEVIAV--------AVDVGQGGESLETIRQRA---- 51

Query: 81  DTIN---VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             +    V  YV D  + F N   +P   +    +   P V   +R V    L+   R+ 
Sbjct: 52  --LGCGAVEAYVADASDEFANEYCMPTLKANGLYQGHYPLVSAISRPVIVKHLVKAAREF 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD- 194
           GA  +A G                   C       DQ  F               P+ D 
Sbjct: 110 GATTVAHG-------------------CTGK--GNDQVRFEVGIQTLGPDLKCIAPVRDL 148

Query: 195 -MKKESVRDLAREMGLDIADKS 215
            + ++     A E GL I    
Sbjct: 149 ALTRDKAIAFAEEKGLPIETTK 170


>gi|312875894|ref|ZP_07735884.1| GMP synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797375|gb|EFR13714.1| GMP synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 511

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 37/196 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV A+SGGVDSSV A L+ +     IG  L          RKG       ++      
Sbjct: 216 QKVVCALSGGVDSSVAAVLVHKA----IGKNLYCIFVDHGLLRKGEADEVMSIFK----- 266

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           D  +++    D ++RF  A           G T     +  R +              +L
Sbjct: 267 DQFDMNVIKVDAKDRFLEA---------LRGVT---DPEEKRKIIGREFIRVFEEEAEKL 314

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLGD 194
           G    L  G        V + G  +    +           +    Q+ +   +  PL +
Sbjct: 315 GDIKFLVQG---TIYPDVVESGVGKAATIKSHHN-------VGGLPQKIKFEKIIEPLRE 364

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+G+ 
Sbjct: 365 LFKDEVRRVGIELGIP 380


>gi|297185882|gb|ADI24231.1| argininosuccinate synthase [Glomus intraradices]
          Length = 412

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV++A SGG+D+S +   L   GY+VI   +                  +D   AR 
Sbjct: 2   SQGRVLLAYSGGLDTSCILVWLIEQGYEVIA-YMANI------------GQEEDFEAARE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDL 129
               I     Y+ D  + + + +I P   + A  E           P +  ++       
Sbjct: 49  KALKIGAKKVYIEDLRQIYVDELIFPAIQANAIYENVYLLGTSLARPVIARSQ------- 101

Query: 130 LSVTRQLGADVLATG 144
           + +  +     ++ G
Sbjct: 102 IEIATKENCQFVSHG 116


>gi|254820435|ref|ZP_05225436.1| argininosuccinate synthase [Mycobacterium intracellulare ATCC
           13950]
          Length = 405

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +  +         D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEDMEVIRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   S A      P V   +R +    L++  R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTILSNALYMDRYPLVSAISRPLIVKHLVAAAREHGGS 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|314924249|gb|EFS88080.1| GMP synthase protein [Propionibacterium acnes HL001PA1]
 gi|314982160|gb|EFT26253.1| GMP synthase protein [Propionibacterium acnes HL110PA3]
 gi|315090391|gb|EFT62367.1| GMP synthase protein [Propionibacterium acnes HL110PA4]
 gi|315093777|gb|EFT65753.1| GMP synthase protein [Propionibacterium acnes HL060PA1]
 gi|315103896|gb|EFT75872.1| GMP synthase protein [Propionibacterium acnes HL050PA2]
          Length = 517

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|291557133|emb|CBL34250.1| GMP synthase (glutamine-hydrolyzing) [Eubacterium siraeum V10Sc8a]
          Length = 519

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   D +V++A+SGGVDSSV  ALL +  G  +  V     +     K +G      
Sbjct: 217 QIREKVGDGKVLLALSGGVDSSVACALLSKAVGNQLTCVF---VDHGFMRKNEGD----- 268

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +  +     +V+    +  +RF      V  P       GE                
Sbjct: 269 ---EVEQAFKDWDVNFIRVNAADRFIGKLEGVSDPETKRKTIGEEF-----------IRV 314

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
                +++G  D L  G        V + G     + +           +          
Sbjct: 315 FEEEAKKIGKVDFLVQG---TIYPDVIESGTGDAAVIKSHHN-------VGGLPDYVDFK 364

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+ VR L  E+GL 
Sbjct: 365 EIIEPLRLLFKDEVRKLGTELGLS 388


>gi|289427690|ref|ZP_06429402.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J165]
 gi|295131290|ref|YP_003581953.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289159181|gb|EFD07373.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J165]
 gi|291375776|gb|ADD99630.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK137]
          Length = 524

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 224 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 275 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 321

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 322 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 375 RTLFKDEVRAVGLELGLP 392


>gi|159906142|ref|YP_001549804.1| GMP synthase subunit B [Methanococcus maripaludis C6]
 gi|159887635|gb|ABX02572.1| GMP synthase, large subunit [Methanococcus maripaludis C6]
          Length = 310

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   + + ++A+SGGVDS+V A L  K  G  ++ V            RK       
Sbjct: 14  EIRKQINNRKTIIALSGGVDSAVAAVLADKAIGDKLLAVY-----VDTGLMRKNESEEIW 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            ++      + + ++  + + ++ F      VI P       G   +             
Sbjct: 69  KIFK-----EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLFIEV----------- 112

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V  + G +VL  G      +      K    +  P  +  D               +
Sbjct: 113 FEKVAEEQGEEVLVQGTIAPDWIESEGQIKTHHNIALPGGMVLD---------------V 157

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR LA  +GL 
Sbjct: 158 VEPLRELYKDEVRLLAVALGLP 179


>gi|115376200|ref|ZP_01463442.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821768|ref|YP_003954126.1| hypothetical protein STAUR_4519 [Stigmatella aurantiaca DW4/3-1]
 gi|115366773|gb|EAU65766.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394840|gb|ADO72299.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 67/215 (31%), Gaps = 51/215 (23%)

Query: 24  VVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VA SGGVDS+    V    L      V  +               +  A ++  +AR +
Sbjct: 32  LVAFSGGVDSTFVLKVAVEELGERALAVTAL--------------SASVAPEEEQEAREL 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                  H V    E             YAA  T   C  C   +   DL    RQ    
Sbjct: 78  AARFGARHEVLTSNEL--------ANPQYAANPT-NRCYFCKTEL--YDLCEARRQ---- 122

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             A G+ +    +  DD K  R   +     R QS          L         + KE 
Sbjct: 123 --ALGYAVVLDGFNADDFKDHRPGHKAAQEHRVQSP---------LAQA-----GLTKEE 166

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +R  +  +GL   DK   Q  C   +  Y   V R
Sbjct: 167 IRAWSHHLGLPTWDKP--QMACLASRIPYGTSVTR 199


>gi|33241304|ref|NP_876246.1| PP-loop superfamily ATPase [Prochlorococcus marinus subsp.
          marinus str. CCMP1375]
 gi|81663872|sp|Q7V9H8|QUEC_PROMA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|33238834|gb|AAQ00899.1| Predicted PP-loop superfamily ATPase [Prochlorococcus marinus
          subsp. marinus str. CCMP1375]
          Length = 227

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 15/81 (18%)

Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
          + L++ PK    +  +SGG+DS+   A+    G++VIG++   ++  +  KR+       
Sbjct: 1  MSLEERPKT---IALLSGGLDSATATAIAIEQGHNVIGLS---FDYGQRHKRE------- 47

Query: 72 DVYDARRVCDTIN-VSHYVFD 91
           +  A+ + + +  + H++ D
Sbjct: 48 -LEAAKLLANHLKLIEHHIID 67


>gi|315640189|ref|ZP_07895309.1| GMP synthase [Enterococcus italicus DSM 15952]
 gi|315484071|gb|EFU74547.1| GMP synthase [Enterococcus italicus DSM 15952]
          Length = 515

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL++     IG  L          RKG       V DA  +
Sbjct: 217 DKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTSIFVDHGLLRKGE---ADQVMDA--L 267

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-----VTR 134
                ++    D ++RF + +                         F  L       +  
Sbjct: 268 GGKFGLNIIKVDAKDRFLSKLAGVSDPEQKRKIIGNE---------FVYLFDDEATKLAG 318

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G   LA G        V + G       +           +    +    +L  PL  
Sbjct: 319 EEGISFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLNT 368

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+G+ 
Sbjct: 369 LFKDEVRALGTELGMP 384


>gi|291286256|ref|YP_003503072.1| argininosuccinate synthase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883416|gb|ADD67116.1| argininosuccinate synthase [Denitrovibrio acetiphilus DSM 12809]
          Length = 403

 Score = 53.2 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+SV+   L+  GYDV+                       DV   R  
Sbjct: 3   KDKVVLAYSGGLDTSVILKWLQLKGYDVVA-------------YVADLGQLPDVEAIREK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
                 V  Y  D +E F    + P     A  E          R +    ++ V  + G
Sbjct: 50  AMQSGAVDFYALDLQEEFVKDFVYPAVKFNALYEGRYYLGTSLARPIITKGMVEVAHKTG 109

Query: 138 ADVLATG 144
           A  LA G
Sbjct: 110 AKFLAHG 116


>gi|302392812|ref|YP_003828632.1| GMP synthase (glutamine-hydrolyzing) [Acetohalobium arabaticum DSM
           5501]
 gi|302204889|gb|ADL13567.1| GMP synthase (glutamine-hydrolyzing) [Acetohalobium arabaticum DSM
           5501]
          Length = 516

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 35/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDSSV AAL+    G  +  + +     RK    +     G        
Sbjct: 220 DSHVICGLSGGVDSSVAAALVHEAIGDQLTCIFVDHGLLRKNEAEEVKQTFG-------- 271

Query: 79  VCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +++    D ++RF      V  P              +  N  +          +
Sbjct: 272 --QEFDMNLISVDAQQRFFAKLEGVDDP--EEKRK-------IIGNEFI--EVFDEEAGK 318

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG  + L  G      +  G  G       +           +    +     L  PL +
Sbjct: 319 LGDIEYLVQGTIYSDVIESG--GTDDSATIKSHHN-------VGGLPEDMNLKLIEPLRN 369

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+G+ 
Sbjct: 370 IFKDEVREVGEELGIP 385


>gi|282855107|ref|ZP_06264439.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J139]
 gi|282581695|gb|EFB87080.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J139]
          Length = 524

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 224 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 275 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 321

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 322 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 375 RTLFKDEVRAVGLELGLP 392


>gi|183601501|ref|ZP_02962871.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683957|ref|YP_002470340.1| GMP synthase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190999|ref|YP_002968393.1| GMP synthase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196405|ref|YP_002969960.1| GMP synthase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219107|gb|EDT89748.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621607|gb|ACL29764.1| GMP synthase glutamine amidotransferase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249391|gb|ACS46331.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250959|gb|ACS47898.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178740|gb|ADC85986.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793988|gb|ADG33523.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 520

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 47/206 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL+ R  G  +  V            RKG     +  +D   
Sbjct: 215 DARVICGLSGGVDSAVAAALVHRAIGDQLTCVF-----VDHGLLRKGEAEQVK--HD--F 265

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  +     D  + F +A         +  ET    +      KF       ++   
Sbjct: 266 VAAT-GIKLIAVDASKDFLDA-----LKGVSDPETKRKIIGE----KFIRTFEKAQR--- 312

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM--------------DLERDQSYFLFATTQQQ 184
                    +     G  GK  + + +                   +   + +       
Sbjct: 313 ---------QVIEEAGAQGKEVKFLVQGTLYPDVVESGGGDGASNIKSH-HNVGGLPDDI 362

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL  + K+ VR +  E+GL 
Sbjct: 363 KFELIEPLRSLFKDEVRAIGTELGLP 388


>gi|303233648|ref|ZP_07320302.1| NAD+ synthase [Finegoldia magna BVS033A4]
 gi|302495082|gb|EFL54834.1| NAD+ synthase [Finegoldia magna BVS033A4]
          Length = 241

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 43/189 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV  +SGG+DS+V+A L K+  G + +G+ +                  +D  DAR +  
Sbjct: 26  VVFGISGGIDSAVLACLCKKAFGDNALGLIM------------PIKSNPKDEEDARILAK 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +I +     D  E + +A+I  F       +  +     N   +              ++
Sbjct: 74  SIGLRFTKVDLNESY-DALIGTF------EKNSVEMAASNIKPRLR------------MI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              +Y ++  Y+   G  R         +   S                PL ++ K  + 
Sbjct: 115 TLYYYAQNNGYMVLSGSNRSEFMTGYFTKYGDSGAD-----------LMPLLNLYKTDIF 163

Query: 202 DLAREMGLD 210
           ++A+ +G+ 
Sbjct: 164 EMAKVLGIP 172


>gi|253577510|ref|ZP_04854824.1| GMP synthase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843129|gb|EES71163.1| GMP synthase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 512

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 40/205 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     D +V+ A+SGGVDSSVVA L+ +     IG  L          RKG       
Sbjct: 210 DIRTQVGDGKVLCALSGGVDSSVVAMLIHKA----IGDQLTCMFIDHGLLRKGE------ 259

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFS 127
              A  V +T         +  +F   V+       F S  A  + P       R +  +
Sbjct: 260 ---AESVMET---------FVGKFDMKVVKIDARERFLSKLAGVDDPE----QKRKIIGN 303

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           + + V  +  A      +  +  LY    + G       +           +    +   
Sbjct: 304 EFIYVFDEESAKFDDFTYLAQGTLYTDIVESGTATAQTIKSHHN-------VGGLPEDMK 356

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL  + K+ VR +  E+GL 
Sbjct: 357 FKLIEPLKTLFKDEVRKVGEELGLP 381


>gi|87201149|ref|YP_498406.1| ExsB [Novosphingobium aromaticivorans DSM 12444]
 gi|110816238|sp|Q2G3K1|QUEC_NOVAD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|87136830|gb|ABD27572.1| preQ(0) biosynthesis protein QueC [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 233

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS V A L +  G+ V+ +T+        ++R        ++  AR +   +
Sbjct: 14 VVLLSGGLDSMVCAGLAQEQGFRVLALTI------DYNQR-----HRVELDAARAIAARL 62

Query: 84 NVSHYVF 90
           V  +V 
Sbjct: 63 GVERHVI 69


>gi|331006070|ref|ZP_08329406.1| Argininosuccinate synthase [gamma proteobacterium IMCC1989]
 gi|330420107|gb|EGG94437.1| Argininosuccinate synthase [gamma proteobacterium IMCC1989]
          Length = 406

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y    VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVKWLQET-YQCEVVTF-----------TADLGQGEEVEPARAKAE 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R +       + 
Sbjct: 54  ALGVKEIYIDDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRMI------EIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|326799645|ref|YP_004317464.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326550409|gb|ADZ78794.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 516

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 46/212 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +L    ++  V++A+SGGVDSSV A LL +     IG  L          RK       D
Sbjct: 206 ELKDKLQNDHVILALSGGVDSSVAAVLLHQA----IGKNLHCIFVDNGLLRKDEFEQVLD 261

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            Y        + ++    D +  F +            G T     +  R +     + V
Sbjct: 262 SY------KHMGLNIKGIDAKALFYDK---------LKGVT---DPERKRKIIGGAFIDV 303

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD--------LERDQSYF------LF 178
                                  +G   + + +             +  S        + 
Sbjct: 304 ----------FDSAAHEVQQELPEGVEVKWLGQGTIYPDVIESVSVKGPSATIKSHHNVG 353

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                    +  PL  + K+ VR +   +G+D
Sbjct: 354 GLPDFMKLKVVEPLNTLFKDEVRRVGAALGID 385


>gi|196251089|ref|ZP_03149769.1| GMP synthase, large subunit [Geobacillus sp. G11MC16]
 gi|196209383|gb|EDY04162.1| GMP synthase, large subunit [Geobacillus sp. G11MC16]
          Length = 590

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 295 GKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------AES 340

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E+F+  VI       F +       P     +  N  +  F D  
Sbjct: 341 VMKT---------FREQFQMNVIKVDAKERFLAKLKGVSDPEQKRKIIGNEFIYVFDD-- 389

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +    +L  
Sbjct: 390 EAAKLEGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFELIE 439

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  ++G+ 
Sbjct: 440 PLNTLFKDEVRALGTQLGIP 459


>gi|149199461|ref|ZP_01876496.1| hypothetical protein LNTAR_01367 [Lentisphaera araneosa HTCC2155]
 gi|149137396|gb|EDM25814.1| hypothetical protein LNTAR_01367 [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 48/194 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVI---GVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +A SGGVDSS++AAL     Y+ I    V L + +S    + +        + +A+ + 
Sbjct: 23  AIAYSGGVDSSLLAALA----YEFISPEKVELIIADSPSIPRSE--------LKEAKALA 70

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +  N     +D    + + +  P     +       C  C   + FS++ +  ++     
Sbjct: 71  EERN-----WDLTIIYTHEIDNPNYQENSGDR----CYYCKSEL-FSEMSAYAKEKDIRT 120

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G  +       DD    R   +                      +  PL  + KE +
Sbjct: 121 LAYGAIL-------DDLSDHRPGAKAAAEH----------------AVIAPLQILSKEEI 157

Query: 201 RDLAREMGLDIADK 214
           R+L+RE  L  A +
Sbjct: 158 RELSRERDLPTASR 171


>gi|149194409|ref|ZP_01871506.1| hypothetical protein CMTB2_07406 [Caminibacter mediatlanticus TB-2]
 gi|149135584|gb|EDM24063.1| hypothetical protein CMTB2_07406 [Caminibacter mediatlanticus TB-2]
          Length = 262

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAG 70
           + +   ++ +V++A+SGG DS V+  +LKR         +QL    K            G
Sbjct: 27  EFELIKENDKVLIALSGGKDSFVLLHVLKR---------MQLIAPFKFDLAAITIDAGTG 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D    ++ CD+  + +        ++  ++         G +  PC  C   ++   L 
Sbjct: 78  IDYSPLKKWCDSFGIEYI------LYKTPILEIMNEKKRPGSS--PCGFC-ARMRRGALY 128

Query: 131 SVTRQLGADVLATGHY 146
           S  ++LG + LA GH+
Sbjct: 129 SKAKELGFNKLALGHH 144


>gi|172056522|ref|YP_001812982.1| argininosuccinate synthase [Exiguobacterium sibiricum 255-15]
 gi|229889874|sp|B1YJ35|ASSY_EXIS2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|171989043|gb|ACB59965.1| Argininosuccinate synthase [Exiguobacterium sibiricum 255-15]
          Length = 401

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++++A SGG+D+SV    L +D YDV+ + + +   +  S  K           A  V
Sbjct: 3   KQKLILAYSGGLDTSVAIKWLSKD-YDVVALCMDVGEGKDLSVIK---------EKALLV 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                +   V D ++ F N  ++P     A  E   P +   +R +    L+ V    GA
Sbjct: 53  GA---IESIVLDVKDEFANDFVLPALQYGAHYEGAYPLISALSRPLIAEKLVEVAHAQGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 TAVAHG 115


>gi|327325596|gb|EGE67395.1| GMP synthase [Propionibacterium acnes HL103PA1]
          Length = 517

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|298290916|ref|YP_003692855.1| NAD+ synthetase [Starkeya novella DSM 506]
 gi|296927427|gb|ADH88236.1| NAD+ synthetase [Starkeya novella DSM 506]
          Length = 557

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 31/206 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++VAA+     G + V  V L                + + + DA  V 
Sbjct: 292 VVLGLSGGVDSALVAAMAVDALGAERVHCVML-----------PYRYTSNESLSDAAAVA 340

Query: 81  DTINVSHYVFDYEE--RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + V + +    E       V+ P         T          V+ + L+S++ + G+
Sbjct: 341 EALGVRYDIVPIAESVEALEKVLAPMFDGRPRDVTEENLQS---RVRGTLLMSISNKFGS 397

Query: 139 DVLATGHYIRS----RLYVGDDGKRRRIMCRPMDLERDQSYFLFAT-TQQQLCDLRFPLG 193
            V+ TG+            GD       +    DL + Q + L     + +      P G
Sbjct: 398 MVVTTGNKSEMSTGYATLYGDMNGGYNPLK---DLYKTQVFRLCHLRNRWKPAYALGPSG 454

Query: 194 DMKKESVRDLAREMGLDIADKSDSQD 219
            +  E+V  + +      A+  ++Q 
Sbjct: 455 AVMPENV--IVKP---PTAELRENQK 475


>gi|167751537|ref|ZP_02423664.1| hypothetical protein EUBSIR_02538 [Eubacterium siraeum DSM 15702]
 gi|167655345|gb|EDR99474.1| hypothetical protein EUBSIR_02538 [Eubacterium siraeum DSM 15702]
          Length = 519

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   D +V++A+SGGVDSSV  ALL +  G  +  V     +     K +G      
Sbjct: 217 QIREKVGDGKVLLALSGGVDSSVACALLSKAVGNQLTCVF---VDHGFMRKNEGD----- 268

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +  +     +V+    +  +RF      V  P       GE                
Sbjct: 269 ---EVEQAFKDWDVNFIRVNAADRFIGKLEGVSDPETKRKTIGEEF-----------IRV 314

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
                +++G  D L  G        V + G     + +           +          
Sbjct: 315 FEEEAKKIGKVDFLVQG---TIYPDVIESGTGDAAVIKSHHN-------VGGLPDYVDFK 364

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+ VR L  E+GL 
Sbjct: 365 EIIEPLRLLFKDEVRKLGTELGLS 388


>gi|317471540|ref|ZP_07930890.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900988|gb|EFV22952.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 244

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS  +   L +      + +++ G+T+ L                 D
Sbjct: 22  EGDKIAVGISGGKDSLTMLYALAQLRIFYPNKFEIHGITVDL------------GFGNFD 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +    ++C+ + V + +   +    + V           ET  PC  C +  K   L   
Sbjct: 70  ISQVEKLCEELKVPYTIV--KTEIADVVFE------RRKET-NPCSLCAKMRK-GALNEK 119

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A  H+
Sbjct: 120 IKELGCNKVAYAHH 133


>gi|327266954|ref|XP_003218268.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Anolis
           carolinensis]
          Length = 707

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 67/222 (30%), Gaps = 45/222 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSC 67
           D+ +     +V+V +SGGVDS+V  ALL     +     VI V +               
Sbjct: 243 DIKEKVGSSKVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRK 291

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC------- 120
              Q V +A +    + +   V +    F N              TP   +         
Sbjct: 292 RESQSVEEALK---KLGIQVKVVNAAHWFYNG--TTTLPISEEDRTPRKRISKTLNMTTS 346

Query: 121 ---NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQS 174
               R +     + +  +     +     ++        G  R  +          + + 
Sbjct: 347 PEEKRKIIGDTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASVVASGKAEV 401

Query: 175 YFLFATTQQQLCDL------RFPLGDMKKESVRDLAREMGLD 210
                   + +  L        PL D  K+ VR L RE+GL 
Sbjct: 402 IKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRVLGRELGLP 443


>gi|323491641|ref|ZP_08096820.1| GMP synthase [Vibrio brasiliensis LMG 20546]
 gi|323314217|gb|EGA67302.1| GMP synthase [Vibrio brasiliensis LMG 20546]
          Length = 517

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++  +  G           
Sbjct: 222 VILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMEMFG----------- 270

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQ 135
               D   ++    D E+RF  A           G++           V        +++
Sbjct: 271 ----DKFGLNIIKVDAEDRFLKA---------LEGKSDPEDKRKTIGHVFVDVFDEESKK 317

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +        +  + +           +          L  PL +
Sbjct: 318 LKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPLRE 370

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 371 LFKDEVRKIGLELGLP 386


>gi|283850323|ref|ZP_06367612.1| GMP synthase, large subunit [Desulfovibrio sp. FW1012B]
 gi|283574349|gb|EFC22320.1| GMP synthase, large subunit [Desulfovibrio sp. FW1012B]
          Length = 516

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 34/202 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   D  VV A+SGGVDS+VVA +L +     IG  L          R G        
Sbjct: 213 LKEKVGDDEVVCALSGGVDSTVVAVMLHKA----IGKKLHCIFVDNGLLRLGEGEEV--- 265

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---- 129
             A  + +  +++ +  +  + F +           AG T     +  R +  +      
Sbjct: 266 --AAYLREHFDLNLHYINASKLFLDR---------LAGVT---DPEQKRKIIGTSFIEVF 311

Query: 130 -LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +   +      LA G  +   +      K    + +           +         +L
Sbjct: 312 EVEAAKLPKVKYLAQG-TLYPDVIESVSFKGPSAVIKSHHN-------VGGLPDVMKLEL 363

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +A E+G+ 
Sbjct: 364 IEPLRELFKDEVRKVAVELGMP 385


>gi|221321995|ref|ZP_03603289.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 471

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 219 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 264

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 265 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 313

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 314 EADKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 363

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 364 PLNTLFKDEVRALGTELGIP 383


>gi|218777977|ref|YP_002429295.1| GMP synthase [Desulfatibacillum alkenivorans AK-01]
 gi|218759361|gb|ACL01827.1| GMP synthase, large subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 509

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 33/203 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D +V++ +SGGVDSSV A L+ +     IG  L          RKG     ++
Sbjct: 204 EIKEAAGDDKVILGLSGGVDSSVAAVLIHKA----IGKNLYPIFVDNGLLRKGEADRLKE 259

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V+        +N+         +F             +G   +   +  R +     + V
Sbjct: 260 VF-----TQNLNMKVRYAKASRKF------------LSGLKGVTDPEKKRKIIGKVFMDV 302

Query: 133 ----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                +++ GA  LA G      +           + +           +    ++    
Sbjct: 303 FEEEAKKIKGAKFLAQGTLYPDIIESVSAFGGPSAVIKSHHN-------VGGLPKKMKLK 355

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR L  E+GL 
Sbjct: 356 LIEPLKYLFKDEVRLLGEELGLP 378


>gi|313125263|ref|YP_004035527.1| nh(3)-dependent NAD(+) synthetase [Halogeometricum borinquense DSM
           11551]
 gi|312291628|gb|ADQ66088.1| NH(3)-dependent NAD(+) synthetase [Halogeometricum borinquense DSM
           11551]
          Length = 277

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 48/192 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+  A L     G + + G+ +                + +++ DA RV  
Sbjct: 47  VLGLSGGIDSTATAYLAAEALGKENLHGLVM-----------PSVVNSDENMSDAERVAQ 95

Query: 82  TINVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + + + V + +   E F +          AAG         N  V+   +L+       
Sbjct: 96  ELEIEYDVVEIQPIAETFFDTFPEAANDRMAAG---------NVYVRVRGVLNYFVANHE 146

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +  G   RS    G                    YF     Q   C+   P+G++ K+
Sbjct: 147 NKIVLGTGNRSEALTG--------------------YFTKYGDQAVDCN---PIGNLYKQ 183

Query: 199 SVRDLAREMGLD 210
            VR LA  +G+ 
Sbjct: 184 QVRQLAAHVGVP 195


>gi|78485956|ref|YP_391881.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thiomicrospira crunogena XCL-2]
 gi|91206836|sp|Q31F66|GUAA_THICR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78364242|gb|ABB42207.1| GMP synthase (glutamine-hydrolyzing) [Thiomicrospira crunogena
           XCL-2]
          Length = 526

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     +      ++G               +
Sbjct: 231 VLLGLSGGVDSSVVAALLHKAIGDQLTCVF---VDHGLLRHQEGDQVMSMF-------AE 280

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TRQL 136
            + +     D E+ F NA          AGE      +  R +     + +      +  
Sbjct: 281 NMGIKVIRVDAEDYFMNA---------LAGE---ADPEKKRKIIGHAFIEMFDQESAKLT 328

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   LA G      +        +  + +           +    +    +L  PL ++ 
Sbjct: 329 GVKWLAQGTIYPDVIESAGSKTGKAKVIKSHHN-------VGGLPEDMKLELLEPLRELF 381

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 382 KDEVRRLGVALGLP 395


>gi|41407465|ref|NP_960301.1| argininosuccinate synthase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|47605393|sp|P61525|ASSY_MYCPA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|41395817|gb|AAS03684.1| ArgG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 398

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +  +         D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEDMEVIRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L++  R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTIRNNALYMDRYPLVSAISRPLIVKHLVAAAREHGGS 112

Query: 140 VLATG 144
            +A G
Sbjct: 113 TVAHG 117


>gi|197121929|ref|YP_002133880.1| GMP synthase [Anaeromyxobacter sp. K]
 gi|196171778|gb|ACG72751.1| GMP synthase, large subunit [Anaeromyxobacter sp. K]
          Length = 518

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 28/196 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD  V+ A+SGGVDS+V A L+ R     IG  L+         R G     +DV+ A  
Sbjct: 216 KDGHVICALSGGVDSAVAALLVHRA----IGDRLRCIFVDNGVLRAGERQQVEDVFGAM- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                ++     D   RF  A          AG T     +  R +   + ++V  +   
Sbjct: 271 ----FHLPLVTVDASRRFLGA---------LAGVT---DPERKRKIIGHEFIAV-FEQEV 313

Query: 139 DVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + LA  H  R++  V      D         P    +   + +    ++    L  PL +
Sbjct: 314 ERLA-AHGARAKFLVQGTLYPDVIESVSFRGPSATIKSH-HNVGGLPEKMNLSLVEPLRE 371

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 372 LFKDEVRQLGLELGLP 387


>gi|57234409|ref|YP_181563.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Dehalococcoides ethenogenes 195]
 gi|91206804|sp|Q3Z886|GUAA_DEHE1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57224857|gb|AAW39914.1| GMP synthase [Dehalococcoides ethenogenes 195]
          Length = 533

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDS+VVA+L+ +  G  +  + +     R+    +              
Sbjct: 235 DGQVICALSGGVDSAVVASLIHKAIGDQLTCIYVNNGLLRREEADRTLHVFK-------- 286

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             + + +     D  +RF +++                 V  +  +K         +LG 
Sbjct: 287 --NHMGMKIIYVDAVDRFLDSLSGVTDPEQKRK------VIGSEFIKV--FEDEACKLGK 336

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G      +       +     +           +          L  PL  + K
Sbjct: 337 IDFLAQGTLYPDVIESVSSVSKASAKIKSHHN-------VGGLPAHMKLKLIEPLRYLFK 389

Query: 198 ESVRDLAREMGLD 210
           + VR L +E+GL 
Sbjct: 390 DEVRLLGKELGLP 402


>gi|33860597|ref|NP_892158.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|44887936|sp|Q7V3N7|GUAA_PROMP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33633539|emb|CAE18496.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 528

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 35/200 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D    
Sbjct: 224 DKRVLLALSGGVDSSTLAFLLNKA----IGKKLTCMFIDQGFMRKGEPEFLMEFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++     +  ERF +            G T     +  R +            + +
Sbjct: 276 -KKFHIKVEYINARERFIDK---------LNGIT---DPEEKRKIIGREFIRVFEEESNR 322

Query: 136 LG-ADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           LG    LA        I S     D     RI  +           +    +     L  
Sbjct: 323 LGPFQYLAQGTLYPDVIESAGTNLDPKTGERIAVKIKSHHN-----VGGLPKDLQFKLVE 377

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +   +GL 
Sbjct: 378 PLRKLFKDEVRKVGGALGLP 397


>gi|88800780|ref|ZP_01116337.1| NAD synthase [Reinekea sp. MED297]
 gi|88776486|gb|EAR07704.1| NAD synthase [Reinekea sp. MED297]
          Length = 538

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRK 59
            + EA +    D     +   VV+ MSGG+DS++ AA+     G D V+GV +       
Sbjct: 261 ALYEALKTGLADYVNRNRFPGVVLGMSGGIDSALSAAIAVDALGPDRVMGVMM------- 313

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
                    A   + DA      + + + V    E F 
Sbjct: 314 ----PYHYTAKISLEDAEDEARRLGIRYEVLPIGEAFE 347


>gi|313808738|gb|EFS47192.1| GMP synthase protein [Propionibacterium acnes HL087PA2]
          Length = 517

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 70/200 (35%), Gaps = 40/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRF 190
           +L AD       ++  LY   V   G       +           +       Q   L  
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGGGAANIKSHHN-------VGGLPDDLQFS-LVE 365

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +  E+GL 
Sbjct: 366 PLRTLFKDEVRAVGLELGLP 385


>gi|251770857|gb|EES51444.1| NAD+ synthetase [Leptospirillum ferrodiazotrophum]
          Length = 593

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKA 60
           V EA  +   D     +   V+V +SGGVDS++VAA+     G   V GV +        
Sbjct: 312 VYEALTMGVRDYVAKNRLTDVLVGISGGVDSALVAAIACDALGPARVHGVFM-------- 363

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
                   + +   DA  +   +         +E 
Sbjct: 364 ---PSVYTSAESREDATALSAALGFRLETIPIKEL 395


>gi|257386834|ref|YP_003176607.1| argininosuccinate synthase [Halomicrobium mukohataei DSM 12286]
 gi|257169141|gb|ACV46900.1| argininosuccinate synthase [Halomicrobium mukohataei DSM 12286]
          Length = 424

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 93/271 (34%), Gaps = 64/271 (23%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
           +        V +A SGG+D++V  +LLK + GYD V+GVT+ +       +         
Sbjct: 1   MTPETASGTVALAFSGGLDTTVCVSLLKEEYGYDEVVGVTVDVGQPDYEFEEAEETAEA- 59

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                      + V  YV D +E F +  +    ++      PL      R V    +L 
Sbjct: 60  -----------LGVEQYVVDAKEDFADLCLKAVKANADYQGYPLGTALA-RPVIAKAILE 107

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  Q G   +A G                   C       DQ  F       +L  +  P
Sbjct: 108 VAEQEGCSAVAHG-------------------CTGK--GNDQLRFESVWRDSELD-VIAP 145

Query: 192 LGD--MKKESVRDLAREMGLDIA------------------DKSDSQDICFVQQGKYFDV 231
           + +  + +E   + A+E GL +                   + S+ +D   + +   +  
Sbjct: 146 VRELGLTREWENEYAQEKGLPVEGGDGGRYSIDTNLWSRSIEGSELEDPSTIPEDDIYKW 205

Query: 232 VKRINAGIA-------LEGDIVHLNGQILGR 255
            +  +   A        +G+ V ++G  LG+
Sbjct: 206 TENPSGKEAELVEITFEQGEAVAVDGDDLGK 236


>gi|99036011|ref|ZP_01315051.1| hypothetical protein Wendoof_01000105 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 387

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AAL  +     IG  L          RK            + +
Sbjct: 87  EKKVIAAVSGGVDSSVAAALTHKA----IGKQLNCIFIDTGLLRKN-----------QTI 131

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
                +     D    F + +                 +  N  +         +++G  
Sbjct: 132 AMLKEIPINYVDKSNLFLSRLKGITDPEEKRK------IIGNTFI--EVFEEEAKKIGDV 183

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G        +    +        +    ++    L  PL  + K+
Sbjct: 184 DFLMQGTIYSDVVESGHASDNTSTIKSHHN--------VGGLPEKMNLKLVEPLRYLFKD 235

Query: 199 SVRDLAREMGLDIADKSDSQDICF 222
            VR L +E+GL       S +I F
Sbjct: 236 EVRLLGKEIGL-------SDEIIF 252


>gi|42520092|ref|NP_966007.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|225630020|ref|YP_002726811.1| GMP synthase [Wolbachia sp. wRi]
 gi|50400362|sp|Q73IH1|GUAA_WOLPM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800126|sp|C0R5H8|GUAA_WOLWR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|42409829|gb|AAS13941.1| GMP synthase [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|225592001|gb|ACN95020.1| GMP synthase [Wolbachia sp. wRi]
          Length = 520

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AAL  +     IG  L          RK            + +
Sbjct: 220 EKKVIAAVSGGVDSSVAAALTHKA----IGKQLNCIFIDTGLLRKN-----------QTI 264

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
                +     D    F + +                 +  N  +         +++G  
Sbjct: 265 AMLKEIPINYVDKSNLFLSRLKGITDPEEKRK------IIGNTFI--EVFEEEAKKIGDV 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G        +    +        +    ++    L  PL  + K+
Sbjct: 317 DFLMQGTIYSDVVESGHASDNTSTIKSHHN--------VGGLPEKMNLKLVEPLRYLFKD 368

Query: 199 SVRDLAREMGLDIADKSDSQDICF 222
            VR L +E+GL       S +I F
Sbjct: 369 EVRLLGKEIGL-------SDEIIF 385


>gi|34556586|ref|NP_906401.1| ATP-utilizing protein of the PP-loop superfamily [Wolinella
           succinogenes DSM 1740]
 gi|34482300|emb|CAE09301.1| ATP-UTILIZING ENZYME OF THE PP-LOOP SUPERFAMILY [Wolinella
           succinogenes]
          Length = 271

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 43/192 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDSS    LL +  +D +G                   A +++ +A      I
Sbjct: 19  IVAFSGGVDSS----LLLKAAHDALG------EKALGITVTTPYMAEREIKEAIAFAKEI 68

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
              H V  +          P+  +     T   C  C   + FS L  +  Q G   +A 
Sbjct: 69  GARHEVLSF----------PWIPTLKENPT-NRCYLCKHAL-FSSLKKLAYQRGFAHIAE 116

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +                    D  +++     A  +  +      LG + K  +R +
Sbjct: 117 GSNL--------------------DDTKEERPGRIALQELGIATPLLSLG-LSKNEIRQI 155

Query: 204 AREMGLDIADKS 215
           ++E+ L   ++ 
Sbjct: 156 SKELSLKSWNRP 167


>gi|58696743|ref|ZP_00372285.1| GMP synthase [Wolbachia endosymbiont of Drosophila simulans]
 gi|58537069|gb|EAL60195.1| GMP synthase [Wolbachia endosymbiont of Drosophila simulans]
          Length = 455

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AAL  +     IG  L          RK            + +
Sbjct: 197 EKKVIAAVSGGVDSSVAAALTHKA----IGKQLNCIFIDTGLLRKN-----------QTI 241

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
                +     D    F + +                 +  N  +         +++G  
Sbjct: 242 AMLKEIPINYVDKSNLFLSRLKGITDPEEKRK------IIGNTFI--EVFEEEAKKIGDV 293

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G        +    +        +    ++    L  PL  + K+
Sbjct: 294 DFLMQGTIYSDVVESGHASDNTSTIKSHHN--------VGGLPEKMNLKLVEPLRYLFKD 345

Query: 199 SVRDLAREMGLDIADKSDSQDICF 222
            VR L +E+GL       S +I F
Sbjct: 346 EVRLLGKEIGL-------SDEIIF 362


>gi|58698280|ref|ZP_00373198.1| GMP synthase [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535204|gb|EAL59285.1| GMP synthase [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 497

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV AAL  +     IG  L          RK            + +
Sbjct: 197 EKKVIAAVSGGVDSSVAAALTHKA----IGKQLNCIFIDTGLLRKN-----------QTI 241

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
                +     D    F + +                 +  N  +         +++G  
Sbjct: 242 AMLKEIPINYVDKSNLFLSRLKGITDPEEKRK------IIGNTFI--EVFEEEAKKIGDV 293

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G        +    +        +    ++    L  PL  + K+
Sbjct: 294 DFLMQGTIYSDVVESGHASDNTSTIKSHHN--------VGGLPEKMNLKLVEPLRYLFKD 345

Query: 199 SVRDLAREMGLDIADKSDSQDICF 222
            VR L +E+GL       S +I F
Sbjct: 346 EVRLLGKEIGL-------SDEIIF 362


>gi|291530320|emb|CBK95905.1| GMP synthase (glutamine-hydrolyzing) [Eubacterium siraeum 70/3]
          Length = 519

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   D +V++A+SGGVDSSV  ALL +  G  +  V     +     K +G      
Sbjct: 217 QIREKVGDGKVLLALSGGVDSSVACALLSKAVGNQLTCVF---VDHGFMRKNEGD----- 268

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +  +     +V+    +  +RF      V  P       GE                
Sbjct: 269 ---EVEQAFKDWDVNFIRVNAADRFIGKLEGVSDPETKRKTIGEEF-----------IRV 314

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LC 186
                +++G  D L  G        V + G     + +           +          
Sbjct: 315 FEEEAKKIGKVDFLVQG---TIYPDVIESGTGDAAVIKSHHN-------VGGLPDYVDFK 364

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL  + K+ VR L  E+GL 
Sbjct: 365 EIIEPLRLLFKDEVRKLGTELGLS 388


>gi|212702277|ref|ZP_03310405.1| hypothetical protein DESPIG_00288 [Desulfovibrio piger ATCC 29098]
 gi|212674270|gb|EEB34753.1| hypothetical protein DESPIG_00288 [Desulfovibrio piger ATCC 29098]
          Length = 402

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 20/135 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++K+ K  +VV+A SGG+D+SV+   L    Y  +VI VT                   +
Sbjct: 1   MNKDIK--KVVLAYSGGLDTSVILKWLIET-YKCEVITVT-------------ADLGQPE 44

Query: 72  DVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDL 129
           D+               YV D  E      + P     A  E          R +    L
Sbjct: 45  DLSGVEAKAYKTGASKAYVVDLREEMARDFVFPMMRGAARYENRYMLGTSIARPIITKAL 104

Query: 130 LSVTRQLGADVLATG 144
           + + R+ GAD +A G
Sbjct: 105 VDIARKEGADAIAHG 119


>gi|220916722|ref|YP_002492026.1| GMP synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954576|gb|ACL64960.1| GMP synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 518

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 28/196 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD  V+ A+SGGVDS+V A L+ R     IG  L+         R G     +DV+ A  
Sbjct: 216 KDGHVICALSGGVDSAVAALLVHRA----IGDRLRCIFVDNGVLRAGERQQVEDVFGAM- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                ++     D   RF  A          AG T     +  R +   + ++V  +   
Sbjct: 271 ----FHLPLVTVDASRRFLGA---------LAGVT---DPERKRKIIGHEFIAV-FEQEV 313

Query: 139 DVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + LA  H  R++  V      D         P    +   + +    ++    L  PL +
Sbjct: 314 ERLA-AHGARAKFLVQGTLYPDVIESVSFRGPSATIKSH-HNVGGLPEKMNLSLVEPLRE 371

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+GL 
Sbjct: 372 LFKDEVRQLGLELGLP 387


>gi|28211997|ref|NP_782941.1| GMP synthase [Clostridium tetani E88]
 gi|44887955|sp|Q891G7|GUAA_CLOTE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28204440|gb|AAO36878.1| GMP synthase (glutamine-hydrolyzing) [Clostridium tetani E88]
          Length = 510

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSV A ++ +     IG  +T    +     K +G            
Sbjct: 215 DKKVICALSGGVDSSVAAVIVHKA----IGDQLTCIFVDHGLLRKDEGDQVESIFK---- 266

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +   ++    + ++RF   +                 +     ++         +LG
Sbjct: 267 ---EKFQMNLIRVNAQDRFLGKLKGVTEPERKRK------IIGEEFIRV--FEEEANKLG 315

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D L  G        V + G       +           +    +    +L  PL ++ 
Sbjct: 316 KIDYLVQG---TIYPDVVESGTDTSATIKSHHN-------VGGLPEDIEFELIEPLRELF 365

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+G+ 
Sbjct: 366 KDEVRRVGEELGIP 379


>gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 400

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 34/205 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRVC 80
           +V++A+SGG DS V   LL     + +      + +   S          D + +A +V 
Sbjct: 84  KVLLAVSGGPDS-VALMLLAAQWAEAV------WKAPPLSVASVDHGLRPDSLAEAEQVA 136

Query: 81  D---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +    + + H++  +E         P                     ++  L++    +G
Sbjct: 137 EWAARLGLPHHILRWEGE------KPKTRLQERARDA----------RYGLLIAHAETIG 180

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD L T H+   +            + R     R          + +L   R PL  M K
Sbjct: 181 ADYLVTAHHADDQAE-----TILFRLLRGSGP-RGLKGMESLFQRGELLHAR-PLLGMTK 233

Query: 198 ESVRDLAREMGLDIADKSDSQDICF 222
             +  +             + D+ F
Sbjct: 234 AELLAICDTCRHPFFTDPSNLDVRF 258


>gi|239627909|ref|ZP_04670940.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518055|gb|EEQ57921.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 513

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 29/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G       
Sbjct: 209 LREKIGDGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAVF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +      +++    + +ERF   +         A       +     ++       
Sbjct: 266 GPEGQ-----YDLNFIRVNAQERFYARLKG--VEEPEAKRK----IIGEEFIRV--FEEE 312

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++GA D L  G        V + G  +  + +           +    +     +L  
Sbjct: 313 AKKIGAVDYLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKELVE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR    E+G+ 
Sbjct: 363 PLRLLFKDEVRKAGLELGIP 382


>gi|209549819|ref|YP_002281736.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535575|gb|ACI55510.1| Argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 404

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+S++   L+   G +V+  T                  G+++  AR   
Sbjct: 7   KIVLAYSGGLDTSIILKWLQETYGCEVVTFT-------------ADLGQGEELEPARAKA 53

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V    + D  E F    + P           Y  G          R +    L+++
Sbjct: 54  AMLGVKDIRIVDLREEFVRDFVFPMLRANTLYEGQYLLG------SSIARPLIAKHLVAI 107

Query: 133 TRQLGADVLATG 144
            RQ+GAD +A G
Sbjct: 108 ARQIGADAVAHG 119


>gi|168333531|ref|ZP_02691800.1| NAD+ synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 241

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 23 VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          VV+ +SGG DS+V  AL  +  G D V+GV++                   DV  A+ V 
Sbjct: 24 VVIGISGGKDSAVTTALCVKALGADKVLGVSM------------PCSSNPADVEHAKMVA 71

Query: 81 DTINVSHYVFDYEERFRNA 99
          +   V  +V + ++ +   
Sbjct: 72 EAFGVELFVVELKDSYEQM 90


>gi|32266720|ref|NP_860752.1| argininosuccinate synthase [Helicobacter hepaticus ATCC 51449]
 gi|44887709|sp|Q7VGU9|ASSY_HELHP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|32262771|gb|AAP77818.1| argininosuccinate synthase [Helicobacter hepaticus ATCC 51449]
          Length = 404

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   +LK  G  Y    VT                  G++V  AR 
Sbjct: 5   KKVVLAYSGGLDTSV---ILKWLGDNYHCEVVTF-----------TADIGQGEEVEPARE 50

Query: 79  VCDTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
               + +      + D  E F    + P           Y  G +    +   R      
Sbjct: 51  KALKLGIKSENIFIEDLREEFIKDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ + + +GAD +A G
Sbjct: 105 LVEIAKSVGADAIAHG 120


>gi|153217375|ref|ZP_01951126.1| GMP synthase [Vibrio cholerae 1587]
 gi|153800595|ref|ZP_01955181.1| GMP synthase [Vibrio cholerae MZO-3]
 gi|153824618|ref|ZP_01977285.1| GMP synthase [Vibrio cholerae MZO-2]
 gi|153828256|ref|ZP_01980923.1| GMP synthase [Vibrio cholerae 623-39]
 gi|229523410|ref|ZP_04412817.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae TM 11079-80]
 gi|229530102|ref|ZP_04419492.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae 12129(1)]
 gi|254225031|ref|ZP_04918645.1| GMP synthase [Vibrio cholerae V51]
 gi|254285486|ref|ZP_04960450.1| GMP synthase [Vibrio cholerae AM-19226]
 gi|262192491|ref|ZP_06050642.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae CT 5369-93]
 gi|124113606|gb|EAY32426.1| GMP synthase [Vibrio cholerae 1587]
 gi|124123884|gb|EAY42627.1| GMP synthase [Vibrio cholerae MZO-3]
 gi|125622418|gb|EAZ50738.1| GMP synthase [Vibrio cholerae V51]
 gi|148876210|gb|EDL74345.1| GMP synthase [Vibrio cholerae 623-39]
 gi|149741836|gb|EDM55865.1| GMP synthase [Vibrio cholerae MZO-2]
 gi|150424348|gb|EDN16285.1| GMP synthase [Vibrio cholerae AM-19226]
 gi|229333876|gb|EEN99362.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae 12129(1)]
 gi|229339773|gb|EEO04788.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae TM 11079-80]
 gi|262031650|gb|EEY50237.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae CT 5369-93]
 gi|327483551|gb|AEA77958.1| GMP synthase (glutamine-hydrolyzing) [Vibrio cholerae LMA3894-4]
          Length = 517

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGSKLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|229513093|ref|ZP_04402559.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae TMA 21]
 gi|229349986|gb|EEO14940.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae TMA 21]
          Length = 517

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGSKLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|150024624|ref|YP_001295450.1| asparagine synthetase B [Flavobacterium psychrophilum JIP02/86]
 gi|149771165|emb|CAL42632.1| Probable asparagine synthetase [glutamine-hydrolyzing]
           [Flavobacterium psychrophilum JIP02/86]
          Length = 538

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 28/197 (14%)

Query: 19  KDMRVVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D+ + V +SGG+DSS    + + LLK  G                S   G      D  
Sbjct: 218 SDVPIGVLLSGGLDSSLTSSIASRLLKEKG------------KTLHSFSIGLDENAPDAK 265

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA-------AGETPL---PCVDCNRTV 124
            AR+V + +   H+   +       ++                  TP+        +  +
Sbjct: 266 AARKVAEFLGTKHHEVHFTIEQGIEILDKLIWHLETYDVTSVRASTPMYFLSKAITDMGI 325

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           K         ++    L   +   +  +  +  +R + +     L  D+S        + 
Sbjct: 326 KVVLSGEGADEIFGGYLYFRNAPTTEDFQKETIERVQKLFTADLLRADKSTMAHGLEARV 385

Query: 185 --LCDLRFPLGDMKKES 199
             L      +  + K  
Sbjct: 386 PFLDKAFLDVAMLVKPE 402


>gi|88811454|ref|ZP_01126709.1| argininosuccinate synthase [Nitrococcus mobilis Nb-231]
 gi|88791343|gb|EAR22455.1| argininosuccinate synthase [Nitrococcus mobilis Nb-231]
          Length = 404

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L    G +V+  T                  G+++  AR  
Sbjct: 5   KKVVLAYSGGLDTSVILHWLVETYGCEVVTFT-------------ADLGQGEELEPARSK 51

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                V   Y+ D  E F    + P           Y  G +    +   R V       
Sbjct: 52  AKAFGVKQIYIEDLREEFVRDFVFPMFRANALYEGEYLLGTSIARPLIAKRQV------Q 105

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 106 IAHESGADAVAHG 118


>gi|240173151|ref|ZP_04751809.1| argininosuccinate synthase [Mycobacterium kansasii ATCC 12478]
          Length = 398

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L++  R+ G 
Sbjct: 52  LDCGAVEAVVVDARDEFAEGYCLPTILNNALYMDRYPLVSAISRPLIVKHLVAAAREHGG 111

Query: 139 DVLATG 144
            ++A G
Sbjct: 112 GIVAHG 117


>gi|297619989|ref|YP_003708094.1| exsB protein [Methanococcus voltae A3]
 gi|297378966|gb|ADI37121.1| exsB protein [Methanococcus voltae A3]
          Length = 234

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ +  +SGG+DS+V + + K+ GYD+  +T             G      ++  ++++ 
Sbjct: 1  MKAICVLSGGLDSTVASLIAKQKGYDITCLTF----------NYGQQALKNEISASKKIA 50

Query: 81 DTINVSHYVFDY 92
          + +   H + D 
Sbjct: 51 EILGAEHKIIDL 62


>gi|153853932|ref|ZP_01995265.1| hypothetical protein DORLON_01256 [Dorea longicatena DSM 13814]
 gi|149753314|gb|EDM63245.1| hypothetical protein DORLON_01256 [Dorea longicatena DSM 13814]
          Length = 471

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RV++A+SGGVDSSV A LL R  G  +  V     +     K +G    G 
Sbjct: 165 EIREKVGDGRVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEGV 221

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + ++R+ +           AG T  P  +  R +       
Sbjct: 222 FGPNGQ-----FDLNFIRVNAQQRYYDK---------LAGVT-EP--EAKRKIIGEEFIR 264

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++GA D LA G      +  G  G+          + +               
Sbjct: 265 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGE--------SGVIKSHHNVGGLPEHVDFK 316

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           D+  PL D+ K+ VR    E+G+ 
Sbjct: 317 DIIEPLRDLFKDEVRKAGLELGIP 340


>gi|116334419|ref|YP_795946.1| PP family ATPase [Lactobacillus brevis ATCC 367]
 gi|116099766|gb|ABJ64915.1| ATP-utilizing enzyme of the PP-loop superfamily [Lactobacillus
           brevis ATCC 367]
          Length = 278

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 48/200 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV  SGG+DS+VV   LK    DV+G      ++  A           +   A ++  
Sbjct: 20  RVVVGFSGGIDSTVV---LKEA-LDVLG-----RDNVLAVVANSELFLDAEYEMAGQLAK 70

Query: 82  TINVSHYVFDYEERFRNAV----IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +                V    +   A+      TP       +   +  +  V  Q  
Sbjct: 71  GMG-------------AQVTGIQLDYLANDQIKHNTPESWYAMKQMF-YQAMTQVATQFN 116

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +  G        + DD    R   R  D          A +  Q         D+ K
Sbjct: 117 ADAVLDG-------MIMDDNADFRPGLRARDE-------AGAVSVLQTA-------DLYK 155

Query: 198 ESVRDLAREMGLDIADKSDS 217
             VR+LA+ +GL   +K  S
Sbjct: 156 REVRELAQSLGLTNWNKVAS 175


>gi|319650597|ref|ZP_08004737.1| hypothetical protein HMPREF1013_01342 [Bacillus sp. 2_A_57_CT2]
 gi|317397778|gb|EFV78476.1| hypothetical protein HMPREF1013_01342 [Bacillus sp. 2_A_57_CT2]
          Length = 274

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 59/218 (27%)

Query: 10  NSLDLDKNPKDM-----RVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRK 59
           NSL  ++  K++     R+++A SGGVDS+    LLK      G + V+ +T        
Sbjct: 5   NSLVKEQKLKEILSEMERIIIAFSGGVDST---YLLKVALDTLGKENVLAIT-------- 53

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                       ++ +  R+ +TI+  H +    E             Y+       C  
Sbjct: 54  ---ADSESFPPSELEETIRIANTIDAPHQIIKMSEL--------SIPGYSE-NDSNRCYY 101

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           C + + F +L  +  + G   L  G      L   D G+ R  +   ++           
Sbjct: 102 CKKGL-FENLYPIMIEKGYHNLTFG------LIKDDLGEHRPGVKAAIE----------- 143

Query: 180 TTQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKS 215
                  ++R PL   D+ KE +R  ++E+GLD  DK 
Sbjct: 144 ------KNVRGPLAEADITKEDIRIRSKELGLDTWDKP 175


>gi|261867873|ref|YP_003255795.1| GMP synthase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413205|gb|ACX82576.1| gmp synthase (glutamine-hydrolyzing) [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 519

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L    +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLNEGVQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D E RF +           AG   +   +  R +     + V 
Sbjct: 273 -------DKFGLNITRVDAESRFLSE---------LAG---VSDPEAKRKIIGKVFVDVF 313

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 314 DDESKKLTNVKWLAQGTIYPDVIESAAGKTGKAHVIKSHHN-------VGGLPDYMKLGL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 367 VEPLRELFKDEVRKIGLALGLP 388


>gi|188997246|ref|YP_001931497.1| Argininosuccinate synthase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932313|gb|ACD66943.1| Argininosuccinate synthase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 399

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+A SGG+D+SV+   L   G++VI  T  +    + S+ +      +    A  V
Sbjct: 2   KKRVVLAYSGGLDTSVIVRWLTDRGFEVITYTADVGQGEELSEIE------EKAKRAGAV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
              I+      D  E F     +P   + A  E   P +   +R +    L+ V  +  A
Sbjct: 56  KAIID------DINEEFARDYCMPLMRAGALYEGKYPLISSLSRPLIAKKLVEVAHKENA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 HYVAHG 115


>gi|76800682|ref|YP_325690.1| NAD(+) synthase (glutamine-hydrolyzing) 2 [Natronomonas pharaonis
           DSM 2160]
 gi|76556547|emb|CAI48118.1| NAD(+) synthase (glutamine-hydrolyzing) 2 [Natronomonas pharaonis
           DSM 2160]
          Length = 270

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 56/184 (30%), Gaps = 39/184 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DS+  A L     G + V G+ L             S    +   DA  V 
Sbjct: 38  VVVGLSGGLDSTTTATLAVEALGSERVYGLVL-----------PSSKLGSKSAQDAETVA 86

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + H     +     A              P P       V   +L++  R     +
Sbjct: 87  DVLGIDHETIHLQPLL--ACFGDMV--------PGPVDLHGDPVVRGNLVARLRMSMLYL 136

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            A       RL VG   +   ++              + T          PL  + K  V
Sbjct: 137 TAN---AMERLVVGTTNRSEHLL-------------GYFTKHGDGAADVLPLAHLYKTEV 180

Query: 201 RDLA 204
             LA
Sbjct: 181 ERLA 184


>gi|15640787|ref|NP_230417.1| GMP synthase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585763|ref|ZP_01675558.1| GMP synthase [Vibrio cholerae 2740-80]
 gi|121726010|ref|ZP_01679309.1| GMP synthase [Vibrio cholerae V52]
 gi|147675501|ref|YP_001216253.1| GMP synthase [Vibrio cholerae O395]
 gi|153817288|ref|ZP_01969955.1| GMP synthase [Vibrio cholerae NCTC 8457]
 gi|153821377|ref|ZP_01974044.1| GMP synthase [Vibrio cholerae B33]
 gi|227080947|ref|YP_002809498.1| GMP synthase [Vibrio cholerae M66-2]
 gi|229505618|ref|ZP_04395128.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae BX 330286]
 gi|229510710|ref|ZP_04400189.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae B33]
 gi|229517832|ref|ZP_04407276.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae RC9]
 gi|229608636|ref|YP_002879284.1| GMP synthase [Vibrio cholerae MJ-1236]
 gi|254847905|ref|ZP_05237255.1| GMP synthase [Vibrio cholerae MO10]
 gi|255744574|ref|ZP_05418525.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholera CIRS 101]
 gi|262161291|ref|ZP_06030402.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae INDRE 91/1]
 gi|262168784|ref|ZP_06036479.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae RC27]
 gi|13627138|sp|Q9KTW2|GUAA_VIBCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739762|sp|A5F3F1|GUAA_VIBC3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800124|sp|C3LT21|GUAA_VIBCM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|9655215|gb|AAF93933.1| GMP synthase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550126|gb|EAX60142.1| GMP synthase [Vibrio cholerae 2740-80]
 gi|121631492|gb|EAX63862.1| GMP synthase [Vibrio cholerae V52]
 gi|126512204|gb|EAZ74798.1| GMP synthase [Vibrio cholerae NCTC 8457]
 gi|126521087|gb|EAZ78310.1| GMP synthase [Vibrio cholerae B33]
 gi|146317384|gb|ABQ21923.1| GMP synthase [Vibrio cholerae O395]
 gi|227008835|gb|ACP05047.1| GMP synthase [Vibrio cholerae M66-2]
 gi|227012592|gb|ACP08802.1| GMP synthase [Vibrio cholerae O395]
 gi|229344547|gb|EEO09521.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae RC9]
 gi|229350675|gb|EEO15616.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae B33]
 gi|229357841|gb|EEO22758.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae BX 330286]
 gi|229371291|gb|ACQ61714.1| GMP synthase (glutamine-hydrolyzing) [Vibrio cholerae MJ-1236]
 gi|254843610|gb|EET22024.1| GMP synthase [Vibrio cholerae MO10]
 gi|255737605|gb|EET92999.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholera CIRS 101]
 gi|262022902|gb|EEY41608.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae RC27]
 gi|262029041|gb|EEY47694.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae INDRE 91/1]
          Length = 517

 Score = 53.2 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGSKLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|237740329|ref|ZP_04570810.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 2_1_31]
 gi|229422346|gb|EEO37393.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 2_1_31]
          Length = 258

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 50/194 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++ +SGG+DS++ A LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAILGLSGGIDSALAAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++  V +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLGINSKVIE---------ITDMIDAYFKNEKDSTSLRMGNKMARERMSILYDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVIGT-------------------------SNKTEIYLGYSTQFGDSACAFNPIGDLY 164

Query: 197 KESVRDLAREMGLD 210
           K +V +L+R + + 
Sbjct: 165 KTNVWELSRYLNIP 178


>gi|315230928|ref|YP_004071364.1| thiamine biosynthesis ThiI-like protein [Thermococcus barophilus
           MP]
 gi|315183956|gb|ADT84141.1| thiamine biosynthesis ThiI-like protein [Thermococcus barophilus
           MP]
          Length = 198

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 40/223 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V  +S G+DS V   L+ + G +VI +  +  +  K  K +      +++Y      +
Sbjct: 3   KAVALLSSGIDSPVAIYLMLKKGLEVIPIHFKQ-DEGKYKKVQKIWKQLKELYP-----E 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +     V D    ++  V                CV C  T+ +     + R+ GA  +
Sbjct: 57  RLK-ELVVVD-VYEYQAPVFEKIMEMKKH---KWICVFCKFTM-YRKATEIARENGALAI 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG  +        D      +    DL                  +  PL  + KE V 
Sbjct: 111 ITGDSLGQVASQTLDNLFIISL--ATDLP-----------------ILRPLIGLDKEEVI 151

Query: 202 DLAREMG-LDIADKSDSQDIC-FVQ-----QGKYFDVVKRINA 237
            +A+++G  DI+ + +  + C FV      +G   +  +    
Sbjct: 152 KIAKKIGTFDISIEPE--EGCPFVPKHPIIRGSLGEFRRIYKE 192


>gi|187935562|ref|YP_001886423.1| ExsB family protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723715|gb|ACD24936.1| ExsB family protein [Clostridium botulinum B str. Eklund 17B]
          Length = 239

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   K+     +++I +TL              
Sbjct: 14  DFDMIQDGDKIAVGLSGGKDSLTLLHLLNTYKKFSPQNFELIAITL-------------- 59

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D     ++C+ + V  Y    +   +  V           +   PC  C   ++ 
Sbjct: 60  NPGGVDNSPLYKLCENLEVPFYEI--QTDIKKIVFD-------LRKEKNPCSLC-ANLRR 109

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L     +LG + +A GH+
Sbjct: 110 GALHHNAEKLGCNKVALGHH 129


>gi|270308142|ref|YP_003330200.1| GMP synthase (glutamine-hydrolysing) [Dehalococcoides sp. VS]
 gi|270154034|gb|ACZ61872.1| GMP synthase (glutamine-hydrolysing) [Dehalococcoides sp. VS]
          Length = 560

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 27/190 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDS+VVA+L+ +  G  +  + +     R+    +                +
Sbjct: 265 VICALSGGVDSAVVASLIHKAIGEQLTCIYVNNGLLRREEADRTLHVFK----------N 314

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-ADV 140
            + +     D  +RF   +                 V  +  +K         +LG  D 
Sbjct: 315 HMGMKIIYVDAVDRFLEGLGGVTDPEQKRK------VIGSEFIKV--FEDEACKLGTIDF 366

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +       +     +           +          L  PL  + K+ V
Sbjct: 367 LAQGTLYPDVIESVSSVSKASAKIKSHHN-------VGGLPAHMKLKLIEPLRYLFKDEV 419

Query: 201 RDLAREMGLD 210
           R L +E+GL 
Sbjct: 420 RLLGKELGLP 429


>gi|78044956|ref|YP_359914.1| GMP synthase [Carboxydothermus hydrogenoformans Z-2901]
 gi|91206799|sp|Q3AD70|GUAA_CARHZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77997071|gb|ABB15970.1| GMP synthase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 509

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 40/196 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV A+SGGVDSSV A L+ +  G ++  +            RKG          A  V 
Sbjct: 216 KVVCALSGGVDSSVAAVLVHKAIGDNLTCIF-----VDHGLLRKGE---------AEEVV 261

Query: 81  DTINVSHYVFDYEERFR-NAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            T         ++E+F+ N V V     + A    +   +  R +              +
Sbjct: 262 RT---------FKEQFQMNLVFVDAKEQFLAKLKGVRDPEQKRKIIGHEFIRVFEEEAAK 312

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG    L  G        V + G       +           +    +     L  PL  
Sbjct: 313 LGDIRFLVQG---TLYPDVVESGTATAATIKSHHN-------VGGLPEDMKFQLIEPLKW 362

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L  E+GL 
Sbjct: 363 LFKDEVRELGLELGLP 378


>gi|313887829|ref|ZP_07821509.1| PP-loop family protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846172|gb|EFR33553.1| PP-loop family protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 272

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 24/141 (17%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+ ++       ++ VA+SGG DS  +A LL+          L+ +N         +  
Sbjct: 30  INNYEMISP--GDKIAVAISGGKDSLTLAKLLQE---------LKKHNKVPFELEFIAMD 78

Query: 69  AGQDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            G    +  R+   C+ + +   V D      + V        + G T   C  C   ++
Sbjct: 79  PGYLPENRERLEYNCEKLGIPVKVHD------SDVFSVAEKLSSGGST---CYMC-ARMR 128

Query: 126 FSDLLSVTRQLGADVLATGHY 146
             +L +  ++LG + LA GH+
Sbjct: 129 RGNLYNRAQELGCNKLALGHH 149


>gi|296284927|ref|ZP_06862925.1| exsB protein [Citromicrobium bathyomarinum JL354]
          Length = 231

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
             +SGG+DS V AAL +  G++V  +T+                  +++  AR++   +
Sbjct: 11 AALLSGGLDSMVAAALARERGHEVHALTIDY-----------GQRHVREIEAARKIAKAL 59

Query: 84 NVSHY---VFDYEE 94
           ++ +     D  +
Sbjct: 60 GLASHREITLDLRK 73


>gi|262306081|gb|ACY45633.1| gln amidotransferase [Neogonodactylus oerstedii]
          Length = 197

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI V +     RK    +               
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALSEDQVIAVHIDNGFMRKNESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRNAV 100
              + +   V +   +F + V
Sbjct: 95  -RKLGLKLRVINARHQFYDGV 114


>gi|221632485|ref|YP_002521706.1| glutamine-dependent NAD(+) synthetase [Thermomicrobium roseum DSM
           5159]
 gi|221157196|gb|ACM06323.1| glutamine-dependent NAD(+) synthetase [Thermomicrobium roseum DSM
           5159]
          Length = 586

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 21/127 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DSS+ A +     G + V G+++                +   + DA  +  
Sbjct: 332 VIGLSGGIDSSLTACIAADALGPENVTGLSM-----------PSRYSSRHSIEDAEELAR 380

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNR---TVKFSDLLSVTRQLG 137
            + +   +   E   R  V     +    G  P  P V        ++ + L++ + + G
Sbjct: 381 NLGIRFLIVPIEPVHR--VFREVLA--PLGNQPEEPDVADENLQARIRGTILMTYSNRFG 436

Query: 138 ADVLATG 144
             VL TG
Sbjct: 437 PIVLTTG 443


>gi|239616502|ref|YP_002939824.1| argininosuccinate synthase [Kosmotoga olearia TBF 19.5.1]
 gi|239505333|gb|ACR78820.1| argininosuccinate synthase [Kosmotoga olearia TBF 19.5.1]
          Length = 428

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 25/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++A SGG+D+SV+   L   G++VI     +         K           A++
Sbjct: 2   KKEKVILAYSGGLDTSVILKWLSEKGFEVIAFVANVGQRDDFDAIKEKALKTG----AKK 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLS 131
           V        YV D  + F    I P           Y  G +    +   + V       
Sbjct: 58  V--------YVEDLRKEFVTDFIFPALMGNAIYEGRYLLGTSLARPLIAKKQV------E 103

Query: 132 VTRQLGADVLATG 144
           +  + GA  +A G
Sbjct: 104 IAEKEGAQYVAHG 116


>gi|209528333|ref|ZP_03276789.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209491236|gb|EDZ91635.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 275

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 61/239 (25%)

Query: 1   MVVSEATRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           MV+ +  +L SL  ++++       ++A SGG+DS++VA +     YD++G      +  
Sbjct: 1   MVIEKLQQLQSLFAEMEQA------LIAYSGGIDSTLVAKIA----YDILG------DRA 44

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-- 116
            A          +D+ DAR     I +SH     EE +   +  P         T  P  
Sbjct: 45  LAVTAVSPSLLPEDLEDARIQAAMIGISH-----EEIYTQEMANP-------NYTANPVN 92

Query: 117 -CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            C  C   +    L  + RQ G   +  G      +   D    R  +    +       
Sbjct: 93  RCYFCKSEL-HDQLKPLARQRGYLYIVDG------VNADDLQDYRPGVQAAKERG----- 140

Query: 176 FLFATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
                       +R PL +  + K  VR++++ +GL   DK  SQ  C   +  Y + +
Sbjct: 141 ------------VRSPLAEVGVTKAEVREISKYLGLSCWDKP-SQP-CLSSRFPYGEEI 185


>gi|119025704|ref|YP_909549.1| GMP synthase [Bifidobacterium adolescentis ATCC 15703]
 gi|154487478|ref|ZP_02028885.1| hypothetical protein BIFADO_01331 [Bifidobacterium adolescentis
           L2-32]
 gi|118765288|dbj|BAF39467.1| GMP synthase [Bifidobacterium adolescentis ATCC 15703]
 gi|154083996|gb|EDN83041.1| hypothetical protein BIFADO_01331 [Bifidobacterium adolescentis
           L2-32]
          Length = 520

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 53/206 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGEQLTCVF-----VDHGLLRKGEAEQVKHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG--ETPLPCVDCNRTVK 125
               +     D  E F            +  +I   F  ++     +         + VK
Sbjct: 270 ---GIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGASGKEVK 326

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDG-KRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F             ++    Y       G DG    +       L +D         + Q
Sbjct: 327 F-------------LVQGTLYPDVVESGGGDGAANIKSHHNVGGLPKD--------IKFQ 365

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
           L     PL  + K+ VR +  E+GL 
Sbjct: 366 L---IEPLRTLFKDEVRAIGTELGLP 388


>gi|297618698|ref|YP_003706803.1| ATPase of the PP-loop superfamily protein implicated in cell cycle
           control-like protein [Methanococcus voltae A3]
 gi|297377675|gb|ADI35830.1| ATPase of the PP-loop superfamily protein implicated in cell cycle
           control-like protein [Methanococcus voltae A3]
          Length = 367

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 47/211 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTL-QLYNSRKASKRKGSCCAGQDVYDAR 77
           + + ++ +SGG DS+   AL K    +V+  +     ++   +               A 
Sbjct: 59  NKKALLMLSGGKDSATALALCKELNINVVLCIHYVHNWSWDISKNE------------AD 106

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +    +V     D  E+    +           +    C  C   +K    +   ++ G
Sbjct: 107 NLAKKYDVPIIFPDITEKLSKKI--------KGAKGKSICRICKDIMKLRA-VEYAKENG 157

Query: 138 ADVLATGHYI------------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            D++ TG               R +    +D      M       R  +YF         
Sbjct: 158 FDIIITGDTALEKISGPILDDLREKNPKLEDKDFYHKMELSKIPRRYDTYF--------- 208

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSD 216
                PL  + +  V  +    G+++    +
Sbjct: 209 ---LRPLLRLSQNDVMAIHEHYGINVQRVHE 236


>gi|322373059|ref|ZP_08047595.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus sp. C150]
 gi|321278101|gb|EFX55170.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus sp. C150]
          Length = 520

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           ++    +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MANFVDMQIAQIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 V  
Sbjct: 264 RKGEGDQVME-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  EMG+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGTEMGMP 389


>gi|315106189|gb|EFT78165.1| GMP synthase protein [Propionibacterium acnes HL030PA1]
          Length = 517

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDFQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|315022618|gb|EFT35644.1| GMP synthase [Riemerella anatipestifer RA-YM]
 gi|325336907|gb|ADZ13181.1| GMP synthase, PP-ATPase domain/subunit [Riemerella anatipestifer
           RA-GD]
          Length = 509

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 48/210 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V++ +SGGVDSSV A L+ +  G  +  +                     
Sbjct: 205 EIRQKVGNQKVILGLSGGVDSSVAAVLIHKAIGSQLTCIF--------------VDTGLL 250

Query: 72  DVYDARRVCD------TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              +A++V +       +N+     D  ERF +            G   +   +  R + 
Sbjct: 251 RKNEAQKVMENYGSHFNLNIKL--IDASERFLSK---------LKG---VSDPEQKRKII 296

Query: 126 FSDLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            S+ ++V  +      GA  LA G  I   +      K    + +           +   
Sbjct: 297 GSEFVAVFDEESHKIEGAKFLAQG-TIYPDVIESQSVKGPSAVIKSHHN-------VGGL 348

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL ++ K+ VR +  E+G+ 
Sbjct: 349 PEDMEFELLEPLRELFKDEVRKVGEELGIP 378


>gi|302686048|ref|XP_003032704.1| argininosuccinate synthetase [Schizophyllum commune H4-8]
 gi|300106398|gb|EFI97801.1| argininosuccinate synthetase [Schizophyllum commune H4-8]
          Length = 426

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            PK  RV++A SGG+D+S + A L   GY+V    +                  +D   A
Sbjct: 3   APKG-RVLIAYSGGLDTSCILAWLIEQGYEVYA-FMA------------DVGQEEDFAAA 48

Query: 77  RRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
            +    +     ++ D +  F   +I P   +    E          R V    ++SV  
Sbjct: 49  EKKALKVGAKKFFLEDLKREFVEELIYPAVQANCIYENVYLLGTSLARPVIARGMMSVAD 108

Query: 135 QLGADVLATG 144
           + G D ++ G
Sbjct: 109 REGCDYVSHG 118


>gi|292670966|ref|ZP_06604392.1| GMP synthase [Selenomonas noxia ATCC 43541]
 gi|292647587|gb|EFF65559.1| GMP synthase [Selenomonas noxia ATCC 43541]
          Length = 518

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 71/208 (34%), Gaps = 43/208 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +     R + A+SGGVDSSV A LL +  G  +  V     +     K +G      
Sbjct: 213 ELREKIGSGRALCALSGGVDSSVAAVLLSKAIGSQLTCVF---VDHGLLRKNEGD----- 264

Query: 72  DVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--- 125
              +   V       +V+    + ++RF              G T  P  +  R +    
Sbjct: 265 ---EVEAVFGSSGVYDVNFIRINAQDRFYEK---------LRGIT-EP--EQKRKIIGEE 309

Query: 126 -FSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
                    R++GA D L  G        V + G  +  + +           +      
Sbjct: 310 FIRVFEEAAREIGAVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDH 359

Query: 184 Q-LCDLRFPLGDMKKESVRDLAREMGLD 210
               ++  PL  + K+ VR   RE+G+ 
Sbjct: 360 VDFKEIVEPLRLLFKDEVRAAGRELGIP 387


>gi|170076909|ref|YP_001733547.1| exsB protein [Synechococcus sp. PCC 7002]
 gi|169884578|gb|ACA98291.1| exsB protein [Synechococcus sp. PCC 7002]
          Length = 225

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R VV +SGG+DS+  AA    DGY+V  ++ +                 +++  A+++ 
Sbjct: 2  KRAVVLLSGGLDSATSAAQAIADGYEVFALSFRY-----------GQKHSRELVAAQKIA 50

Query: 81 DTINV-SHYVFD 91
          + + +  H++ D
Sbjct: 51 EHLGITEHFIMD 62


>gi|326434852|gb|EGD80422.1| argininosuccinate synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 427

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +  VV+A SGG+D+S +   L   GYDV+   L +Y      +          V  A+ V
Sbjct: 14  NKTVVLAYSGGLDTSCILVWLIEQGYDVVA-YLAVY-IEDLKEEFIRDFIYPTVQAAKAV 71

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGE-TPLPCVDCNRTVKFSDLLS 131
                   Y+ D +E F    I P           Y  G     PC+   +       + 
Sbjct: 72  --------YIEDLKEEFIRDFIYPTVQANAIYEDRYLMGTAIARPCIARRQ-------IE 116

Query: 132 VTRQLGADVLATG 144
           + ++  A  ++ G
Sbjct: 117 IAKKENAGFVSHG 129


>gi|324992915|gb|EGC24835.1| GMP synthase [Streptococcus sanguinis SK405]
          Length = 520

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|311894905|dbj|BAJ27313.1| putative argininosuccinate synthase [Kitasatospora setae KM-6054]
          Length = 401

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 8   RVVLAYSGGLDTSVCIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRQRA 55

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F N   +P   + A  +   P V   +R V    L++  ++ GA
Sbjct: 56  LDCGAVEAEVADARDEFANEYCLPALKANALYQGQYPLVSALSRPVIVKHLVAAAQKHGA 115

Query: 139 DVLATG 144
             +A G
Sbjct: 116 TTVAHG 121


>gi|239943680|ref|ZP_04695617.1| GMP synthase [Streptomyces roseosporus NRRL 15998]
 gi|239990132|ref|ZP_04710796.1| GMP synthase [Streptomyces roseosporus NRRL 11379]
 gi|291447144|ref|ZP_06586534.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces roseosporus NRRL 15998]
 gi|291350091|gb|EFE76995.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces roseosporus NRRL 15998]
          Length = 528

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 28/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 226 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T      V D E+RF +A+             G   +   +  +       L + ++
Sbjct: 277 VAAT-GAKLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQ-------LEILQE 328

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G +V            V   G       +           +          L  PL  +
Sbjct: 329 EGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPDDIEFQLVEPLRQL 381

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + +E+GL 
Sbjct: 382 FKDEVRMVGQELGLP 396


>gi|256821769|ref|YP_003145732.1| argininosuccinate synthase [Kangiella koreensis DSM 16069]
 gi|256795308|gb|ACV25964.1| argininosuccinate synthase [Kangiella koreensis DSM 16069]
          Length = 403

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VV+A SGG+D+S     L   GY+V  +                  + +  +   +
Sbjct: 2   SQKKVVLAFSGGLDTSFCVPYLMEKGYEVHTLF-----------VNTGGVSREKCHQIEK 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               +    H+  D ++     +I P     +  +   P +  +R +   + + + +QL 
Sbjct: 51  RALGLGAKQHWQVDAQQMLWEEIITPLVWGNSKYQGQYPLLCADRYLIVKESIKLCQQLN 110

Query: 138 ADVLATG 144
            +++A G
Sbjct: 111 TNIVAHG 117


>gi|254490943|ref|ZP_05104125.1| NAD synthase family [Methylophaga thiooxidans DMS010]
 gi|224463852|gb|EEF80119.1| NAD synthase family [Methylophaga thiooxydans DMS010]
          Length = 546

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++  AL     G + V  V +                A   + DA+ + 
Sbjct: 287 VVIGLSGGIDSALTLALAVDAIGAEKVHAVMM-----------PTRYTAQISLDDAKAMA 335

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD----LLSVTRQL 136
           D + V + V   E      V   F ++ +   T LP       ++       L++++ + 
Sbjct: 336 DGLGVHYSVMSIEP-----VFESFLTTLSDQFTGLPVDTTEENIQARCRGIILMALSNKT 390

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           G+ VLATG                  M       +D    ++ T   QL  
Sbjct: 391 GSMVLATG---NKSEMAVGYSTLYGDMAGGYSPLKD----VYKTMVYQLSH 434


>gi|149182589|ref|ZP_01861060.1| argininosuccinate synthase [Bacillus sp. SG-1]
 gi|148849725|gb|EDL63904.1| argininosuccinate synthase [Bacillus sp. SG-1]
          Length = 413

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 40/205 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-A 76
           +  ++V+A SGG+D+SV    ++   GY+VI + L +          G       + D A
Sbjct: 2   EKEKIVLAYSGGLDTSVSIKWIQEKYGYEVIALGLDV----------GEGKNLDFIKDKA 51

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
            +V     V  Y+ D +E      I+P   +    E   P     +R +    L+ V  +
Sbjct: 52  LQVGA---VKAYMVDAKEMLAQDYIIPALKANCLYEGKYPLSSALSRPLIAKLLVDVAEK 108

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL-- 192
            GA  +A G                   C       DQ  F  +         +  P+  
Sbjct: 109 EGAVAVAHG-------------------CTGK--GNDQVRFEVSINALAPDMKVVAPVRE 147

Query: 193 GDMKKESVRDLAREMGLDIADKSDS 217
             M ++     A+E G+ I    D+
Sbjct: 148 WGMTRDEEIHYAQEKGIPIPVDLDN 172


>gi|110639453|ref|YP_679662.1| argininosuccinate synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282134|gb|ABG60320.1| argininosuccinate synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 398

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D++  A  L  D GY+   +   + N+   SK +        + D  +
Sbjct: 2   KKKVVLAFSGGLDTTYCAKYLSEDLGYE---LHTAIVNTGGFSKEE--------LADIEK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQ 135
               + V SH   D  E++    +              P       V F  +      ++
Sbjct: 51  KAYELGVTSHTTLDIIEKYYAECVKYMVYGNILRNNTYPLSVSAERV-FQAMAIAEHAKK 109

Query: 136 LGADVLATG 144
           +GA  +A G
Sbjct: 110 VGATAVAHG 118


>gi|300710635|ref|YP_003736449.1| GMP synthase subunit B [Halalkalicoccus jeotgali B3]
 gi|299124318|gb|ADJ14657.1| GMP synthase subunit B [Halalkalicoccus jeotgali B3]
          Length = 305

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 38/190 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A+SGGVDSSV AAL     Y+ +G  L          RKG      + +         
Sbjct: 25  VIALSGGVDSSVAAALA----YEAVGDQLTPVYVDTGLMRKGETEQVSETFSYME----- 75

Query: 84  NVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             S  V D EERF +    V  P A     GE               +     ++  AD 
Sbjct: 76  --SLRVVDAEERFLDLLSGVTDPEAKREVIGEGF-----------IREFEREAKEADADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G     R+   + G +       +    D               +  P+ D+ K+ V
Sbjct: 123 LVQGTIYPDRIES-EGGIKSHHNVGGLPDVID------------FEGIVEPVRDLYKDEV 169

Query: 201 RDLAREMGLD 210
           R++ARE+GL+
Sbjct: 170 REVARELGLE 179


>gi|284045062|ref|YP_003395402.1| argininosuccinate synthase [Conexibacter woesei DSM 14684]
 gi|283949283|gb|ADB52027.1| argininosuccinate synthase [Conexibacter woesei DSM 14684]
          Length = 431

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79
           RV++  SGG+D+SV+   ++ +   +V+ +T+ L    +             + D ARR+
Sbjct: 31  RVLLLYSGGLDTSVMLKWIQDEYRAEVVCLTVNLGQPGEDYD---------VIKDKARRI 81

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                +  +V D  E F +  I P   + A      P      R +     +   R+ G 
Sbjct: 82  GA---IDTHVVDAREVFAHEFIKPAIKANALYGGGYPLFTALGRPLIAKLAVEYARRTGC 138

Query: 139 DVLATG 144
           D +A G
Sbjct: 139 DTIAHG 144


>gi|268679972|ref|YP_003304403.1| NAD+ synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618003|gb|ACZ12368.1| NAD+ synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 267

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 41/188 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+V +SGGVDS+VVA L ++   +     L L           S  +   +  A  +C+ 
Sbjct: 39  VIVGISGGVDSAVVAVLAQKAFKEN---FLALM-------LPSSTSSKASLEHATELCEK 88

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +               I   A SY            ++ ++  +  +  R      + 
Sbjct: 89  FAIRVERIP---------IGALAESYFHN-----DPHASK-LRIGNFCARMRM----AVL 129

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                R    V     +  I+              + T    L     P+G++ K  +  
Sbjct: 130 YDIAAREHALVLGTSNKSEILL------------GYGTIFGDLACALNPIGELLKTEIFA 177

Query: 203 LAREMGLD 210
            A  +G+ 
Sbjct: 178 FAEHLGVP 185


>gi|328946326|gb|EGG40470.1| GMP synthase [Streptococcus sanguinis SK1087]
          Length = 520

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|324994448|gb|EGC26361.1| GMP synthase [Streptococcus sanguinis SK678]
          Length = 520

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|225848405|ref|YP_002728568.1| argininosuccinate synthase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643412|gb|ACN98462.1| argininosuccinate synthase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 399

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 42/204 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+A SGG+D+SV+   L   G++VI      Y +      + S    + +  A  V
Sbjct: 2   KKRVVLAYSGGLDTSVIVRWLTDRGFEVI-----TYTADVGQGEELSEIEEKALK-AGAV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
              I+      D +E F     +P   + A  E     +   +R +    L+ V  + GA
Sbjct: 56  KAIID------DIKEEFARDYCMPLMRATALYEGKYTLLSSLSRPLIAKKLVEVAHREGA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGDM 195
             +A G                           DQ  F   ++A        +  P+ + 
Sbjct: 110 HYVAHG---------------------STGKGNDQVRFEASVWALDPDIE--VLAPVREW 146

Query: 196 K---KESVRDLAREMGLDIADKSD 216
           +   +E   D A + G+ +    +
Sbjct: 147 EFKSREEEIDYAMKHGIPVKATKE 170


>gi|190892296|ref|YP_001978838.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652]
 gi|190697575|gb|ACE91660.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652]
          Length = 404

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+S++   L+   G +V+  T                  G+++  AR   
Sbjct: 7   KIVLAYSGGLDTSIILKWLQETYGCEVVTFT-------------ADLGQGEELEPARAKA 53

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             + +    + D  E F    + P   + A  E          R +    L++V R++GA
Sbjct: 54  AMLGIKDIRIADLREEFVGEFVFPMLRANALYEGQYLLGSSIARPLIAKHLVAVAREVGA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|172040791|ref|YP_001800505.1| argininosuccinate synthase [Corynebacterium urealyticum DSM 7109]
 gi|229889873|sp|B1VH30|ASSY_CORU7 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|171852095|emb|CAQ05071.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 399

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 37/203 (18%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV+A SGG+D++V    + K    +VI V++ L               G+D+   R+
Sbjct: 2   KDRVVLAYSGGLDTTVAISWIAKERNAEVIAVSIDL------------GQGGEDMETVRQ 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  + F N   +P   +        P V   +R +    +    ++ 
Sbjct: 50  RALGAGAVESIVVDARDEFANDYCLPTIKANGLYMKEYPLVSAISRPLIVKHMAEAAKEH 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195
               +A G                    +  D  R +  F     + ++     P  D  
Sbjct: 110 NGTAVAHG-----------------CTGKGNDQVRFEVGFANTAPELEI---IAPARDYA 149

Query: 196 -KKESVRDLAREMGLDIADKSDS 217
             ++     A E  + I     S
Sbjct: 150 WTRDKAIAFAEENNIPIEQSKSS 172


>gi|126700013|ref|YP_001088910.1| hypothetical protein CD2398 [Clostridium difficile 630]
 gi|255101555|ref|ZP_05330532.1| hypothetical protein CdifQCD-6_12149 [Clostridium difficile
           QCD-63q42]
 gi|255656373|ref|ZP_05401782.1| hypothetical protein CdifQCD-2_11914 [Clostridium difficile
           QCD-23m63]
 gi|296450178|ref|ZP_06891939.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296878559|ref|ZP_06902564.1| PP-loop family protein [Clostridium difficile NAP07]
 gi|115251450|emb|CAJ69283.1| putative 2-thiocytidine tRNA biosynthesis protein TtcA [Clostridium
           difficile]
 gi|296260941|gb|EFH07775.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296430366|gb|EFH16208.1| PP-loop family protein [Clostridium difficile NAP07]
          Length = 286

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A +   LK+ G   +DV  + +                   +
Sbjct: 52  EGDKIAVAISGGKDSILMAKMFQELKKHGQVNFDVEFIAM-----DPGYHANIRQLLIDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+  ++FD    F   +    A  Y       PC  C   ++   L S 
Sbjct: 107 -------CEYLNIPIHLFD-SRIF--EIADEIAKDY-------PCYMC-ARMRRGALYSK 148

Query: 133 TRQLGADVLATGHY 146
             +LG + LA GH+
Sbjct: 149 AEELGCNKLALGHH 162


>gi|254975987|ref|ZP_05272459.1| hypothetical protein CdifQC_11769 [Clostridium difficile QCD-66c26]
 gi|255093375|ref|ZP_05322853.1| hypothetical protein CdifC_12054 [Clostridium difficile CIP 107932]
 gi|255315120|ref|ZP_05356703.1| hypothetical protein CdifQCD-7_12247 [Clostridium difficile
           QCD-76w55]
 gi|255517790|ref|ZP_05385466.1| hypothetical protein CdifQCD-_11811 [Clostridium difficile
           QCD-97b34]
 gi|255650905|ref|ZP_05397807.1| hypothetical protein CdifQCD_12011 [Clostridium difficile
           QCD-37x79]
 gi|260683976|ref|YP_003215261.1| hypothetical protein CD196_2241 [Clostridium difficile CD196]
 gi|260687636|ref|YP_003218770.1| hypothetical protein CDR20291_2288 [Clostridium difficile R20291]
 gi|306520791|ref|ZP_07407138.1| hypothetical protein CdifQ_13896 [Clostridium difficile QCD-32g58]
 gi|260210139|emb|CBA64296.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213653|emb|CBE05492.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 286

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A +   LK+ G   +DV  + +                   +
Sbjct: 52  EGDKIAVAISGGKDSILMAKMFQELKKHGQVNFDVEFIAM-----DPGYHANIRQLLIDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+  ++FD    F   +    A  Y       PC  C   ++   L S 
Sbjct: 107 -------CEYLNIPIHLFD-SRIF--EIADEIAKDY-------PCYMC-ARMRRGALYSK 148

Query: 133 TRQLGADVLATGHY 146
             +LG + LA GH+
Sbjct: 149 AEELGCNKLALGHH 162


>gi|15806874|ref|NP_295597.1| GMP synthase [Deinococcus radiodurans R1]
 gi|13627172|sp|Q9RT91|GUAA_DEIRA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|6459656|gb|AAF11428.1|AE002027_1 GMP synthase [Deinococcus radiodurans R1]
          Length = 506

 Score = 53.2 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 28/190 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGGVDSS +A LL +  G  +  V +                   +        
Sbjct: 213 RVLLGISGGVDSSTLALLLAKAVGERLTAVFI-----------DHGLLRLGEREQVEAAL 261

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V+    D ++ F   +                     R    +      +    + 
Sbjct: 262 TPLGVNLVTVDAKDEFLGQLAGVSDPEQKR-------KIIGREFIRAFERETAKLGDFEF 314

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G      +     G       +           +          L  P   + K+ V
Sbjct: 315 LAQGTLYPDVIESA--GGEGAANIKSHHN-------VGGLPDDVQFKLVEPFRTLFKDEV 365

Query: 201 RDLAREMGLD 210
           R++AR +GL 
Sbjct: 366 REIARLLGLP 375


>gi|323706021|ref|ZP_08117591.1| GMP synthase, large subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534635|gb|EGB24416.1| GMP synthase, large subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 512

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 44/207 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +VV A+SGGVDSSV A L+ R  +D +I + +                   
Sbjct: 210 EIRQKVGNDKVVCALSGGVDSSVAAVLVNRAIHDQLICIFVDN--------------GLL 255

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLP--CVDCNRTV 124
              +A +V DT         ++  F   +I       F       + P     +  N  +
Sbjct: 256 RKNEAEKVVDT---------FKNNFDMEIIKVDAKDRFLERLKGVKDPEEKRKIIGNEFI 306

Query: 125 KFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
                    +++G    L  G        V + G       +           +    Q 
Sbjct: 307 --EVFKEEAKKIGDVKYLVQG---TLYPDVIESGSPVASTIKSHHN-------VGGLPQD 354

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
              +L  PL  + K+ VR + RE+G+ 
Sbjct: 355 VGFELIEPLRMLFKDEVRQVGRELGMP 381


>gi|319776752|ref|YP_004136403.1| nh(3)-dependent nad(+) synthetase [Mycoplasma fermentans M64]
 gi|318037827|gb|ADV34026.1| NH(3)-dependent NAD(+) synthetase [Mycoplasma fermentans M64]
          Length = 264

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 47/191 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ +SGG+DS+VV AL K+  G +V+GV +                   D+ D + +  
Sbjct: 45  IVLGISGGIDSAVVVALAKKAFGKNVLGVIM------------PVDSMQNDLKDIKELEK 92

Query: 82  TINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++     D +  + + +    P  +S  A          N   +    +        +
Sbjct: 93  AVDLKFITIDLKNTY-DTIKQALPLINSNLA--------LSNIKPRLRMAVIYALAQENN 143

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   +   ++G   K         D   D                  PL  + K  
Sbjct: 144 YLVAGTGNKCETHIGYFTKY-------GDGGSD----------------ILPLSKLLKSE 180

Query: 200 VRDLAREMGLD 210
           V+ +A+ + + 
Sbjct: 181 VKIIAKHLKVP 191


>gi|326791319|ref|YP_004309140.1| PP-loop domain protein [Clostridium lentocellum DSM 5427]
 gi|326542083|gb|ADZ83942.1| PP-loop domain protein [Clostridium lentocellum DSM 5427]
          Length = 242

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 38/210 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSV-VAAL--LKR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D +   +  R+ + +SGG DS +   AL  LKR     ++++G+T+ L            
Sbjct: 16  DYNMIAEGDRIAIGISGGKDSLILALALSHLKRFYPKSFEIMGITVSLGFDN-------- 67

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                D+ +     DT+ V  YV + +       I              PC  C++  K 
Sbjct: 68  ----FDLSEVGSFFDTLQVPFYVCNTQ-------IAQIIFEERKES--NPCSLCSKMRK- 113

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L    +++G   +A GH          D     ++       R  +     T   Q+ 
Sbjct: 114 GALYEEAKEMGCTKIALGH--------NKDDINETLLMSLFYEGRIHT-MAPVTYMDQVD 164

Query: 187 -DLRFPLGDMKKESVRDLAREMGLDIADKS 215
             +  PL    ++ +R   ++ G  +    
Sbjct: 165 LHIIRPLIYAPEKDIRGFVKKEGFPVVKSP 194


>gi|294495611|ref|YP_003542104.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666610|gb|ADE36459.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
          Length = 255

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQLYN 56
           +V +  R +  D +    +  + VA+SGG DSSV+  +L +     +G  +  +T     
Sbjct: 32  MVEKKVRAHIEDQNLILNNEHIAVALSGGKDSSVLLYILAKILPEFEGVKLTAIT----- 86

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96
                         + +  A+ +   +N+ H +  + E F
Sbjct: 87  ----VDEGIPNYREETLTYAQELATFLNIEHRIVSFRENF 122


>gi|238810142|dbj|BAH69932.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 270

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 47/191 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+ +SGG+DS+VV AL K+  G +V+GV +                   D+ D + +  
Sbjct: 51  IVLGISGGIDSAVVVALAKKAFGKNVLGVIM------------PVDSMQNDLKDIKELEK 98

Query: 82  TINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++     D +  + + +    P  +S  A          N   +    +        +
Sbjct: 99  AVDLKFITIDLKNTY-DTIKQALPLINSNLA--------LSNIKPRLRMAVIYALAQENN 149

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   +   ++G   K         D   D                  PL  + K  
Sbjct: 150 YLVAGTGNKCETHIGYFTKY-------GDGGSD----------------ILPLSKLLKSE 186

Query: 200 VRDLAREMGLD 210
           V+ +A+ + + 
Sbjct: 187 VKIIAKHLKVP 197


>gi|237808916|ref|YP_002893356.1| GMP synthase [Tolumonas auensis DSM 9187]
 gi|259647691|sp|C4L8C4|GUAA_TOLAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|237501177|gb|ACQ93770.1| GMP synthase, large subunit [Tolumonas auensis DSM 9187]
          Length = 525

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++  +  G           
Sbjct: 230 VILGLSGGVDSSVVAMLIHRAVGKQLTCVFVDNGLLRLNEGQQVMEMFG----------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               D   ++    D EERF +A   +  P     A G   +                 +
Sbjct: 279 ----DHFGLNIIKVDAEERFLSALKGIADPELKRKAIGRVFVEV-----------FDDES 323

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 324 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 376

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 377 RELFKDEVRRVGLELGLP 394


>gi|170780979|ref|YP_001709311.1| GMP synthase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155547|emb|CAQ00659.1| GMP synthase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 526

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 41/203 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AA++ R  G  +  V +         ++       +D   A  
Sbjct: 221 DARVICGLSGGVDSAVAAAIVHRAVGDQLTCVFV----DHGLLRQDERRQVEEDYVAAT- 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
                 V     D  ++F +           AG T     +  R +   + +        
Sbjct: 276 -----GVRLVTVDAADQFLDG---------LAGVT---DPEAKRKIIGREFIRSFEGAAE 318

Query: 135 QLGADVLATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L  +  A G  IR  +        V   G       +           +    +    +
Sbjct: 319 ALVLEAKADGEPIRFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLKFE 371

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + RE+GL 
Sbjct: 372 LVEPLRTLFKDEVRAIGRELGLP 394


>gi|163856396|ref|YP_001630694.1| GMP synthase [Bordetella petrii DSM 12804]
 gi|226738391|sp|A9IKK0|GUAA_BORPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|163260124|emb|CAP42425.1| GMP synthase [Bordetella petrii]
          Length = 531

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ +  G  +  V     +       +G           +   +
Sbjct: 229 VILGLSGGVDSSVAAALIHKAIGDQLTCVF---VDHGLLRLDEGKQVM-------QTFAE 278

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + V     D  E+F   +             G   +           +  L   + L  
Sbjct: 279 NMGVKIIHVDATEQFMGKLAGQADPEAKRKIIGREFVEVFQA-----EAGKLKSAKWLAQ 333

Query: 139 DVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             +         ++       K    +    D    Q              L  PL ++ 
Sbjct: 334 GTIYPDVIESAGAKTGKATSIKSHHNVGGLPDTLNLQ--------------LLEPLRELF 379

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 380 KDEVRELGVALGLP 393


>gi|138893907|ref|YP_001124360.1| GMP synthase [Geobacillus thermodenitrificans NG80-2]
 gi|134265420|gb|ABO65615.1| GMP synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 513

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 218 GKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------AES 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E+F+  VI       F +       P     +  N  +  F D  
Sbjct: 264 VMKT---------FREQFQMNVIKVDAKERFLAKLKGVSDPEQKRKIIGNEFIYVFDD-- 312

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +    +L  
Sbjct: 313 EAAKLEGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  ++G+ 
Sbjct: 363 PLNTLFKDEVRALGTQLGIP 382


>gi|94986688|ref|YP_594621.1| NH(3)-dependent NAD(+) synthetase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730937|emb|CAJ54300.1| NH(3)-dependent NAD(+) synthetase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 525

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 43/190 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSS+VAAL     G + V G+ +                +   + DA  + 
Sbjct: 285 VVLGLSGGIDSSIVAALAVEALGEHRVHGILM-----------PSPWSSEGSITDAELLA 333

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGA 138
           + ++V  Y+        +       S    G  P    + N    ++   L++++ + G 
Sbjct: 334 NNLDVKTYLLPIHTLIDS--FTHSLSELFIGYPPD-VTEENIQSRIRGVLLMAISNKFGW 390

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            VL+TG+     +           +                           P+GD+ K 
Sbjct: 391 MVLSTGNKSERAV-------GYCTLYGDTCGG------------------LAPIGDLYKT 425

Query: 199 SVRDLAREMG 208
            V  LA+   
Sbjct: 426 EVYHLAQWYN 435


>gi|86159210|ref|YP_465995.1| NAD synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775721|gb|ABC82558.1| NH(3)-dependent NAD(+) synthetase [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 323

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 13/70 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          VV MSGG+DSSV AAL  R  G D V G+ +     R +S        G  +   R + +
Sbjct: 36 VVGMSGGIDSSVTAALCVRALGKDRVFGLMM---PERDSS--------GDALRLGRMLAE 84

Query: 82 TINVSHYVFD 91
           + +   V D
Sbjct: 85 HLGIRFAVED 94


>gi|170288548|ref|YP_001738786.1| PP-loop domain-containing protein [Thermotoga sp. RQ2]
 gi|170176051|gb|ACB09103.1| PP-loop domain protein [Thermotoga sp. RQ2]
          Length = 304

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 22/134 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ ++++A+SGG DS V    +LK+ GY+V  + ++       + + G     Q++    
Sbjct: 46  RNSKILIAVSGGKDS-VSLWHMLKKLGYEVDALFIR-------AGKSGMVQKAQEI--VE 95

Query: 78  RVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +  + +N   ++ D  E F       I              P       V+   +     
Sbjct: 96  KNAELLNTKLHIVDATEYFEGLSTQEISIMLRR--------PVCSICGVVRRYLMNKFAY 147

Query: 135 QLGADVLATGHYIR 148
           + G DV+ TGH + 
Sbjct: 148 ENGYDVVVTGHNLN 161


>gi|156361200|ref|XP_001625407.1| predicted protein [Nematostella vectensis]
 gi|156212239|gb|EDO33307.1| predicted protein [Nematostella vectensis]
          Length = 401

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 29/130 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGG+D+S +   L+  GYDVI                      +D   AR     +
Sbjct: 11  VLAYSGGLDTSCILVWLQEQGYDVIA-------------YLADIGQTEDFEAAREKAKKL 57

Query: 84  NV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSVTR 134
                Y+ D +E F    I P   + A  E           PC+   +       + +  
Sbjct: 58  GAKKVYIEDLKEEFVTDFIFPSLQANAIYEDRYLLGTAIARPCIAKRQ-------IEIAL 110

Query: 135 QLGADVLATG 144
           + GA  +  G
Sbjct: 111 KEGAQFVTHG 120


>gi|37521616|ref|NP_924993.1| hypothetical protein gll2047 [Gloeobacter violaceus PCC 7421]
 gi|35212614|dbj|BAC89988.1| gll2047 [Gloeobacter violaceus PCC 7421]
          Length = 278

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 51/199 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+VA SGGVDS++VA +     +D +G      +   A          +D+ +A R   
Sbjct: 18  RVLVAYSGGVDSTLVAKVA----FDALG------DRALAVTAASPSLMAEDLEEAVRQAA 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGA 138
            I ++H + +  E                  T  P   C  C   +    L+ +    G 
Sbjct: 68  QIGIAHEIIETTELDDPNY------------TSNPANRCYFCKSEL-HGRLVPLATARGI 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           +V+  G        + D G  R       +                   +R PL +  + 
Sbjct: 115 EVVVDG------ANLDDLGDYRPGFQAAREKG-----------------IRSPLIEVGLT 151

Query: 197 KESVRDLAREMGLDIADKS 215
           K  VR+L+R +GL   DK 
Sbjct: 152 KLEVRELSRGLGLSTWDKP 170


>gi|261839778|gb|ACX99543.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori 52]
          Length = 508

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL    + VI       ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLL----HRVIK------DNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+  R L +E+G+ 
Sbjct: 358 PLRELFKDEARLLGKELGIS 377


>gi|254414877|ref|ZP_05028641.1| exsB protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178366|gb|EDX73366.1| exsB protein [Microcoleus chthonoplastes PCC 7420]
          Length = 232

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 32/206 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV +SGG+DSS V    K +GY+   +                    +++  A  +  
Sbjct: 8   KAVVLLSGGLDSSTVLYQAKAEGYECYAI-----------SFDYQQRHQRELESAIAIAK 56

Query: 82  TINVSHYVF---DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
              V ++     D  +   +A+                +   P+  V    T+  S  LS
Sbjct: 57  GAGVKYHQVVRFDLSQWGGSALTDDTLDLPQTRSLQQMSQSIPITYVPARNTIFLSFGLS 116

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
               +GA  L  G          D        CRP  ++  Q  F   T Q +      +
Sbjct: 117 YAEAIGATALYLGVNALDYSGYPD--------CRPDYIQAMQEVFRLGTKQGREGEPIQI 168

Query: 189 RFPLGDMKKESVRDLAREMGLDIADK 214
             PL  +KK  + +L  ++G+   + 
Sbjct: 169 ITPLIQLKKTEIIELGNKLGVPWHET 194


>gi|145594437|ref|YP_001158734.1| argininosuccinate synthase [Salinispora tropica CNB-440]
 gi|145303774|gb|ABP54356.1| argininosuccinate synthase [Salinispora tropica CNB-440]
          Length = 402

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L    G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAEQTGAEVIAV------------AVDVGQGGEDLEAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   + D  E F     +P   + +      P V   +R +    L++  R+ G 
Sbjct: 52  LDCGAVESELVDAREEFAAEYCLPAVRANSLYMDRYPLVSALSRPLIVKHLVAAARKHGG 111

Query: 139 DVLATG 144
            +++ G
Sbjct: 112 TIVSHG 117


>gi|147920252|ref|YP_685981.1| argininosuccinate synthase [uncultured methanogenic archaeon RC-I]
 gi|110621377|emb|CAJ36655.1| argininosuccinate synthase [uncultured methanogenic archaeon RC-I]
          Length = 395

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 88/265 (33%), Gaps = 65/265 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   LLK + G+D VI VT                    ++  A +
Sbjct: 3   KKVVLAYSGGLDTSVCIPLLKENYGFDKVITVT------------VDVGQPPGEIETATK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I+  HY  D ++ F    I P   + A  E  +      R +     + + ++  A
Sbjct: 51  KAKLISDKHYTIDAKDEFVRDYIFPMIKANAMYEGYVIGTSMARPLIAKKCVEIAKKEKA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
           D  A GH    +                     DQ  F     Q  L  +  P+ +M   
Sbjct: 111 D--AFGHGCTGK-------------------GNDQLRFEAVFRQTDLP-VVAPMREMNLT 148

Query: 197 KESVRDLAREMGLDIA------------------DKSDSQDICFVQQGKYFDVVKRINAG 238
           +E   + A++  + +                   +    +D  F+     ++  +     
Sbjct: 149 REWEIEYAKKHKIPVVATKAKPWSVDENIWSRSIEGGKLEDPGFIPPEDIYEWTQDPLKA 208

Query: 239 IALE---------GDIVHLNGQILG 254
                        G  V LNG+ +G
Sbjct: 209 PEKPEIVSIGFAKGVPVSLNGKKMG 233


>gi|308389283|gb|ADO31603.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis alpha710]
          Length = 436

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|302869863|ref|YP_003838500.1| GMP synthase large subunit [Micromonospora aurantiaca ATCC 27029]
 gi|302572722|gb|ADL48924.1| GMP synthase, large subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 518

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDS+V AAL+ R  G  +  V     +       +              
Sbjct: 218 DKEVICGLSGGVDSAVAAALVHRAVGDQLTCVF---VDHGLLRAGEAEQVEKDY------ 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  +   V D  ERF  A          AG T     +  R +   + + V      
Sbjct: 269 VAAT-GIKLKVVDARERFLGA---------LAGVT---DPEQKRKIIGREFIRVFEAAAR 315

Query: 139 DVLATG---HYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++ A G   + ++  LY   V   G       +           +    +     L  PL
Sbjct: 316 EIAAHGDVEYLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLKFALVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 369 RTLFKDEVRTIGLELGLP 386


>gi|225681916|gb|EEH20200.1| argininosuccinate synthase [Paracoccidioides brasiliensis Pb03]
          Length = 266

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKEKVCLAYSGGLDTSCILAWLIEQGYDVVCF-------------LADVGQAEDFEEAE 48

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R    I      V D +  F   +        A  E     +   R V    ++   ++ 
Sbjct: 49  RKALLIGAQKLVVADLKREFVEDLCYRAIQCNAIWEDRY--LLGARPVIARAMMRCAKEE 106

Query: 137 GADVLATG 144
           G   ++ G
Sbjct: 107 GCVAVSHG 114


>gi|154323444|ref|XP_001561036.1| hypothetical protein BC1G_00121 [Botryotinia fuckeliana B05.10]
 gi|150842350|gb|EDN17543.1| hypothetical protein BC1G_00121 [Botryotinia fuckeliana B05.10]
          Length = 405

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V +A SGG+D+S + A L   GYDV+   +                  +D   A+  
Sbjct: 3   KDKVCLAYSGGLDTSCILAWLIEKGYDVV-CFMA------------DVGQEEDFEAAKAK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
              I  V+ YV D +  F + +  P     A  E     V     +      +V ++ G 
Sbjct: 50  AMKIGAVACYVEDLKREFVDELCFPAVQCNAIYENVYLLVIARAQI------TVAQKEGC 103

Query: 139 DVLATG 144
             ++ G
Sbjct: 104 IAVSHG 109


>gi|83749991|ref|ZP_00946936.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia solanacearum UW551]
 gi|83723341|gb|EAP70574.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia solanacearum UW551]
          Length = 593

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 279 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ-MVLDMFE------G 328

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      +  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 329 RLHAKVVHANASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLT 376

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 377 NAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 429

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 430 KDEVRELGVALGLP 443


>gi|327438518|dbj|BAK14883.1| GMP synthase, PP-ATPase domain/subunit [Solibacillus silvestris
           StLB046]
          Length = 544

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +          D  
Sbjct: 249 DKQVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFVDHNLNRKGEVEQVMKTFTED-- 302

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                 ++     D  ERF N +                 +       F +    ++   
Sbjct: 303 -----FDMKLIKIDARERFMNKLAGVSDPEQKRKIIGNEFIYV-----FDE--ESSKLKD 350

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G       +           +    +    +L  PL  + K
Sbjct: 351 MDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFELIEPLNTLFK 400

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+GL 
Sbjct: 401 DEVRALGLELGLP 413


>gi|254493722|ref|ZP_05106893.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291]
 gi|268598934|ref|ZP_06133101.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11]
 gi|268603613|ref|ZP_06137780.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|268682089|ref|ZP_06148951.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332]
 gi|268684299|ref|ZP_06151161.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|268686557|ref|ZP_06153419.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399092|ref|ZP_06643257.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62]
 gi|226512762|gb|EEH62107.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291]
 gi|268583065|gb|EEZ47741.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11]
 gi|268587744|gb|EEZ52420.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|268622373|gb|EEZ54773.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332]
 gi|268624583|gb|EEZ56983.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|268626841|gb|EEZ59241.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610506|gb|EFF39616.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62]
          Length = 436

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPR 64

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  R  CD + V           +  V        AA              ++++
Sbjct: 65  ADDWADFCRNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAE 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 109 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 157

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 158 IWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|153852855|ref|ZP_01994292.1| hypothetical protein DORLON_00274 [Dorea longicatena DSM 13814]
 gi|149754497|gb|EDM64428.1| hypothetical protein DORLON_00274 [Dorea longicatena DSM 13814]
          Length = 384

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 30/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS ++A L +         ++++ + +                   +   
Sbjct: 144 KIAVCISGGKDSMLMAKLFQELLKHGKANFELVFLVM------------NPGYNEDNWKI 191

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +     + +   V      F   +    A          PC  C   ++   L S  ++
Sbjct: 192 IQDNAKVLGIPLTV------FETQIFDTVAD-----IDKNPCYLC-ARMRRGYLYSHAKE 239

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 240 LGCNKIALGHH 250


>gi|39973869|ref|XP_368325.1| hypothetical protein MGG_00919 [Magnaporthe oryzae 70-15]
 gi|145018133|gb|EDK02412.1| hypothetical protein MGG_00919 [Magnaporthe oryzae 70-15]
          Length = 543

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG         +   R   C   +     + + D 
Sbjct: 235 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAVLVDQGVMRHNECAEVK-----KALQDH 285

Query: 83  INVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-----R 134
           + ++  V D  ERF      V  P       G T    +     +K       T      
Sbjct: 286 LGINLTVADASERFLSGLKGVEDPEQKRKFIGNTF-IDIFEEEAIKIEKAAENTPNAGKV 344

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +           I S  + G     +         +R          + Q   L  PL +
Sbjct: 345 EWFLQGTLYPDVIESISFKGPSATIKTHHNVGGLPKR--------MMEGQGLRLIEPLRE 396

Query: 195 MKKESVRDLAREM 207
           + K+ VR + RE+
Sbjct: 397 LFKDEVRAMGREL 409


>gi|254393198|ref|ZP_05008353.1| argininosuccinate synthase [Streptomyces clavuligerus ATCC 27064]
 gi|326440184|ref|ZP_08214918.1| argininosuccinate synthase [Streptomyces clavuligerus ATCC 27064]
 gi|1703452|sp|P50986|ASSY_STRCL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|886906|emb|CAA88926.1| argininosuccinate synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197706840|gb|EDY52652.1| argininosuccinate synthase [Streptomyces clavuligerus ATCC 27064]
 gi|1586511|prf||2204224A argininosuccinate synthetase
          Length = 397

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   + A      P V   +R      L++  ++  A
Sbjct: 52  LACGAVEAEVADAKDEFAEEYCLPAIKANARYMDRYPLVSALSRPAIVKHLVAAAKKHDA 111

Query: 139 DVLATG 144
            ++A G
Sbjct: 112 SIVAHG 117


>gi|118581273|ref|YP_902523.1| NAD synthetase [Pelobacter propionicus DSM 2379]
 gi|118503983|gb|ABL00466.1| NH(3)-dependent NAD(+) synthetase [Pelobacter propionicus DSM 2379]
          Length = 332

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 78/240 (32%), Gaps = 46/240 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DSSV AAL  +  G D V+G+ +                +G  ++  + V  
Sbjct: 41  VVGLSGGIDSSVTAALAVKALGQDRVLGLLM-----------PERNSSGDSLHLGKMVAG 89

Query: 82  TINVS---------HYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--------CNRTV 124
            + +            V  + +++ +AV       Y  G      +          +  +
Sbjct: 90  YLGIETVTEEITNILEVVGFYQKYDSAVCR-VIPEYGRGWKSKIVISNALKQHSYASFYI 148

Query: 125 ----KFSDLLSVTRQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQS 174
               K   ++     L      V AT    R R  +      R          R   DQ 
Sbjct: 149 VAQPKEGAVIKKRLSLEPYLEIVAATNFKQRIRKMLEYYHADRLNYAVAGTPNRLEYDQG 208

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVV 232
           +F+             P+  + K  V  LA   G+   I  +  + D   ++QG+     
Sbjct: 209 FFV-KLGDGAAD--IKPIAHLYKSQVYQLAEYFGIPEEIRQRKPTTDTYSLEQGQDEFFF 265


>gi|312862892|ref|ZP_07723132.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus vestibularis F0396]
 gi|322516905|ref|ZP_08069802.1| GMP synthase [Streptococcus vestibularis ATCC 49124]
 gi|311101752|gb|EFQ59955.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus vestibularis F0396]
 gi|322124528|gb|EFX96010.1| GMP synthase [Streptococcus vestibularis ATCC 49124]
          Length = 520

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           ++    +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MANFVDMQIAQIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 V  
Sbjct: 264 RKGEGDQVME-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  EMG+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGTEMGMP 389


>gi|307721058|ref|YP_003892198.1| preQ(0) biosynthesis protein QueC [Sulfurimonas autotrophica DSM
          16294]
 gi|306979151|gb|ADN09186.1| preQ(0) biosynthesis protein QueC [Sulfurimonas autotrophica DSM
          16294]
          Length = 227

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 11/78 (14%)

Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
          +N  + + V  MSGG+DS++ A +++ +GY++I V    Y+ R  +K          +  
Sbjct: 4  ENKTNKKAVCIMSGGMDSTLSAYMMQNEGYEIIAVHF-NYDQRTQTKE---------LEC 53

Query: 76 ARRVCDTINVSH-YVFDY 92
             +C +++V   Y+ D 
Sbjct: 54 FENICASLHVKQKYILDL 71


>gi|298735957|ref|YP_003728482.1| GMP synthase [Helicobacter pylori B8]
 gi|298355146|emb|CBI66018.1| GMP synthase (glutamine-hydrolysing) [Helicobacter pylori B8]
          Length = 508

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|228476736|ref|ZP_04061402.1| GMP synthase [Streptococcus salivarius SK126]
 gi|228251607|gb|EEK10708.1| GMP synthase [Streptococcus salivarius SK126]
          Length = 520

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           ++    +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MANFVDMQIAQIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 V  
Sbjct: 264 RKGEGDQVME-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  EMG+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGTEMGMP 389


>gi|118104747|ref|XP_422953.2| PREDICTED: hypothetical protein, partial [Gallus gallus]
          Length = 122

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 30/136 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+D  VV+A SGG+D+S +   LK  GY VI    ++  +                  A+
Sbjct: 4   PRDT-VVLAYSGGLDTSCILVWLKEQGYTVIAFLAKIGQTEDFDA-------------AQ 49

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSD 128
           +    +     Y+ D    F    I P   + A  E           PC+          
Sbjct: 50  KKALALGAKKVYIQDVCREFVEDFIWPAVHANALYEDRYMLGSALARPCIA-------RH 102

Query: 129 LLSVTRQLGADVLATG 144
           L+ + ++ GA  +A G
Sbjct: 103 LVLIAQEEGARYIAHG 118


>gi|57529561|ref|NP_001006556.1| GMP synthase [Gallus gallus]
 gi|53136506|emb|CAG32582.1| hypothetical protein RCJMB04_30a22 [Gallus gallus]
          Length = 693

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 39/210 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+V +SGGVDS+V  ALL R      VI V +                  Q V +A + 
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNRDQVIAVHIDN--------GFMRKRESQSVEEALK- 288

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKFSDL 129
              + +   V +    F N              TP   +             R +     
Sbjct: 289 --KLGIQVKVVNAAHSFYNG--NTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTF 344

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQQLC 186
           + +  +     +     ++        G  R  +     L    + +         + + 
Sbjct: 345 VKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAEVIKTHHNDTELIR 399

Query: 187 DL------RFPLGDMKKESVRDLAREMGLD 210
            L        PL D  K+ VR L RE+GL 
Sbjct: 400 KLREEGKVIEPLKDFHKDEVRVLGRELGLP 429


>gi|85711960|ref|ZP_01043014.1| Predicted PP-loop superfamily ATPase [Idiomarina baltica OS145]
 gi|85694146|gb|EAQ32090.1| Predicted PP-loop superfamily ATPase [Idiomarina baltica OS145]
          Length = 219

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V       G++V  ++   Y  R            +++  A +VC
Sbjct: 3  QKVVVIYSGGMDSFTVLNRALEQGHEVSALSF-NYGQR----------HVRELDVAAKVC 51

Query: 81 DTINVSHYVFD 91
          + +N+ H + D
Sbjct: 52 EALNIPHKIVD 62


>gi|316985031|gb|EFV63984.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis H44/76]
          Length = 436

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|297528666|ref|YP_003669941.1| GMP synthase, large subunit [Geobacillus sp. C56-T3]
 gi|297251918|gb|ADI25364.1| GMP synthase, large subunit [Geobacillus sp. C56-T3]
          Length = 510

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +V+ A+SGGVDSSV A L+ R  G  +  +            RKG          A  
Sbjct: 215 GKKVLCALSGGVDSSVAAVLVHRAIGDQLTCIF-----VDHGLLRKGE---------AES 260

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-KFSDLL 130
           V  T         + E+F+  VI       F +       P     +  N  +  F D  
Sbjct: 261 VMKT---------FREQFQMNVIKVDAKDRFLAKLKGVTDPEQKRKIIGNEFIYVFDD-- 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +  G + L  G        + + G       +           +    +    +L  
Sbjct: 310 EAAKFEGIEFLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMKFELIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  ++G+ 
Sbjct: 360 PLNTLFKDEVRALGTQLGIP 379


>gi|221066857|ref|ZP_03542962.1| GMP synthase, large subunit [Comamonas testosteroni KF-1]
 gi|220711880|gb|EED67248.1| GMP synthase, large subunit [Comamonas testosteroni KF-1]
          Length = 538

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 36/198 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L                      
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMFEG---------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                 ++      D  + F   +             G   +  V      K     +  
Sbjct: 279 -----KLHAKVVRVDASDLFLGELAGVSEPEQKRKIIGRLFV-DVFKAEAEKLKA--ANA 330

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL 192
              GA  LA G      +  G    ++ +  +           +     +QL   L  PL
Sbjct: 331 GSKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPL 382

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 383 RDLFKDEVRELGVALGLP 400


>gi|315501325|ref|YP_004080212.1| gmp synthase, large subunit [Micromonospora sp. L5]
 gi|315407944|gb|ADU06061.1| GMP synthase, large subunit [Micromonospora sp. L5]
          Length = 518

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDS+V AAL+ R  G  +  V     +       +              
Sbjct: 218 DKEVICGLSGGVDSAVAAALVHRAVGDQLTCVF---VDHGLLRAGEAEQVEKDY------ 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  +   V D  ERF  A          AG T     +  R +   + + V      
Sbjct: 269 VAAT-GIKLKVVDARERFLGA---------LAGVT---DPEQKRKIIGREFIRVFEAAAR 315

Query: 139 DVLATG---HYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++ A G   + ++  LY   V   G       +           +    +     L  PL
Sbjct: 316 EIAAHGDVEYLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLKFALVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 369 RTLFKDEVRTIGLELGLP 386


>gi|268594781|ref|ZP_06128948.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae 35/02]
 gi|268596895|ref|ZP_06131062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae FA19]
 gi|268548170|gb|EEZ43588.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae 35/02]
 gi|268550683|gb|EEZ45702.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae FA19]
          Length = 435

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 14  FPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPR 63

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  R  CD + V           +  V        AA              ++++
Sbjct: 64  ADDWADFCRNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAE 107

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 108 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 156

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 157 IWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 213


>gi|254786948|ref|YP_003074377.1| argininosuccinate synthase [Teredinibacter turnerae T7901]
 gi|237684351|gb|ACR11615.1| argininosuccinate synthase [Teredinibacter turnerae T7901]
          Length = 411

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 26/138 (18%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +N    +VV+A SGG+D+SV+   L+   Y    VT              +   G++V 
Sbjct: 3   AENSSIKKVVLAYSGGLDTSVIVKWLQET-YQCEVVTF-----------TANIGQGEEVE 50

Query: 75  DARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKF 126
            AR     + V   Y+ D  E F    + P           Y  G +    +   R +  
Sbjct: 51  PARAKAQAMGVKEIYIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRMI-- 108

Query: 127 SDLLSVTRQLGADVLATG 144
                +  + GAD ++ G
Sbjct: 109 ----EIANETGADAISHG 122


>gi|224542853|ref|ZP_03683392.1| hypothetical protein CATMIT_02045 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524228|gb|EEF93333.1| hypothetical protein CATMIT_02045 [Catenibacterium mitsuokai DSM
           15897]
          Length = 289

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 71/237 (29%), Gaps = 56/237 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-RRV- 79
           ++ V +SGG DS ++A LL+            L    K        C       A R++ 
Sbjct: 48  KIAVCISGGKDSMLLAKLLQE-----------LQRHGKFHFDLEFICMDPGYNPANRKLI 96

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               + + +          + + +          G    PC  C   ++   L +  ++L
Sbjct: 97  EENAEKLGIPIQF------YESDIFN-----VVHGIEKNPCYLC-ARMRRGFLYNRAQEL 144

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC--DLRFPLGD 194
           G + +A GH+    +           +   M         +     +     +L  P+  
Sbjct: 145 GCNKIALGHHYSDVIET---------ILMGMMYGAQIQTMMPKLHSKNFKGMELIRPMYL 195

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           + +E +   A +  L                 K+     R        G+I H + +
Sbjct: 196 IHEEDIIAWAEKFNL-----------------KFLQCACRFTEESEARGEIEHTSKR 235


>gi|298711646|emb|CBJ32701.1| GMP synthase (glutamine-hydrolyzing) [Ectocarpus siliculosus]
          Length = 434

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 46/197 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ A+SGGVDSSV A LL++     IG      L ++       G     + V    R+ 
Sbjct: 140 VIGAVSGGVDSSVAAVLLQKA----IGDRFHAVLVDN-------GLLRKNEAVEVVSRLK 188

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           + + ++ +  D ++RF          +   G T     +  R +              ++
Sbjct: 189 EKLGINLHCVDAKDRFL---------TLLDGCT---DPESKRKIIGKTFIHVFQEEAERI 236

Query: 137 G-ADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           G  D L         I S  Y G     +                +          L  P
Sbjct: 237 GKVDFLLQGTLYPDVIESISYKGPSATIKSHHN------------VGGLPDTMHLKLIEP 284

Query: 192 LGDMKKESVRDLAREMG 208
           L ++ K+ VR L   +G
Sbjct: 285 LRELFKDEVRSLGMALG 301


>gi|150398925|ref|YP_001322692.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150399417|ref|YP_001323184.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150011628|gb|ABR54080.1| PP-loop domain protein [Methanococcus vannielii SB]
 gi|150012120|gb|ABR54572.1| PP-loop domain protein [Methanococcus vannielii SB]
          Length = 308

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK----ASKRKGS 66
           +L  +    ++++ + +SGG DS V+A LL            +   + K           
Sbjct: 37  TLGRNIIKNNVKIGIGLSGGKDSLVMAHLLSE--------FFKPIPNAKLIGLMVDEGID 88

Query: 67  CCAGQDVYDARRVCDTINVSHYVF---DYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                 + +A   C+  ++ + V    DY E   + ++           T  PC  C   
Sbjct: 89  GFRTDGINNAIDFCNEYDIEYKVVHFKDYIETDLDTIVKLAKE---KNLTMNPCSFCG-V 144

Query: 124 VKFSDLLSVTRQLGADVLATGHYI 147
           ++   L  +      D LA GH +
Sbjct: 145 IRRKILNKIAIIEKCDYLAIGHNL 168


>gi|50843224|ref|YP_056451.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Propionibacterium acnes KPA171202]
 gi|81611253|sp|Q6A6X1|GUAA_PROAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50840826|gb|AAT83493.1| GMP synthase [glutamine-hydrolyzing] [Propionibacterium acnes
           KPA171202]
          Length = 530

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 230 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 280

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 281 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 327

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 328 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDFQFS-LVEPL 380

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 381 RTLFKDEVRAVGLELGLP 398


>gi|14520709|ref|NP_126184.1| hypothetical protein PAB2029 [Pyrococcus abyssi GE5]
 gi|5457925|emb|CAB49415.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5]
          Length = 323

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 29/203 (14%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            K  R+ VA+SGG DS V+  LL    KR  ++++ +T+                  + V
Sbjct: 45  KKGERIGVAVSGGKDSVVLLHLLAKLRKRFPFEIVAITI---------DEGIKGYRDKSV 95

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSD 128
             A+R  + + V H+++ +        I            A GE    C  C    ++  
Sbjct: 96  EVAKRNAELLGVEHHIYRF-----KDYIGFTLDETVEIMGARGERLGACSYCGVWRRW-L 149

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L     +L  D LA G  +   + V         + R       ++   +    + L   
Sbjct: 150 LNKAAEELKVDKLALGLNLDDEVQV-----FLMNLMRGDVARLGRTGPYYEVIHEGLVPR 204

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL ++ ++ +   A    +++
Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEV 227


>gi|326391022|ref|ZP_08212571.1| NAD+ synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992967|gb|EGD51410.1| NAD+ synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 543

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VV +SGG+DS+VV A+     G + V+ V++                +     DAR 
Sbjct: 288 KKAVVGLSGGIDSAVVCAIAVEALGKENVLAVSM-----------PSRYSSEGSKTDARI 336

Query: 79  VCDTINVSHYVFDYEERFR---------NAVIVPFASSYAAGE 112
           + + + V   V   E  F+         N+VI   A       
Sbjct: 337 LAENLGVEFRVIPIEPVFKSYLSVFNGDNSVIGDLAEENIQAR 379


>gi|325140361|gb|EGC62883.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis CU385]
          Length = 445

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 24  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 77

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 78  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 122 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 171 LLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 223


>gi|317178655|dbj|BAJ56443.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F30]
          Length = 508

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|307265807|ref|ZP_07547358.1| NAD+ synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919202|gb|EFN49425.1| NAD+ synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 543

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + VV +SGG+DS+VV A+     G + V+ V++                +     DAR 
Sbjct: 288 KKAVVGLSGGIDSAVVCAIAVEALGKENVLAVSM-----------PSRYSSEGSKTDARI 336

Query: 79  VCDTINVSHYVFDYEERFR---------NAVIVPFASSYAAGE 112
           + + + V   V   E  F+         N+VI   A       
Sbjct: 337 LAENLGVEFRVIPIEPVFKSYLSVFNGDNSVIGDLAEENIQAR 379


>gi|294084987|ref|YP_003551747.1| argininosuccinate synthase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664562|gb|ADE39663.1| Argininosuccinate synthase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 411

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             + + +          G+D+  AR   
Sbjct: 11  KKVVLAYSGGLDTSVILRWLQD------------HYNAEVVTFTADIGQGEDIEPARAKA 58

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + +   Y+ D  E F    + P           Y  G +    +   R +       +
Sbjct: 59  ELMGIKQIYIEDLREEFVRDYVFPMFRANPLYEGCYLLGTSIARPLIAKRQI------EI 112

Query: 133 TRQLGADVLATG 144
            R++GA+ ++ G
Sbjct: 113 AREVGAEAVSHG 124


>gi|329570895|gb|EGG52605.1| GMP synthase domain protein [Enterococcus faecalis TX1467]
          Length = 523

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|313679560|ref|YP_004057299.1| pp-loop domain protein [Oceanithermus profundus DSM 14977]
 gi|313152275|gb|ADR36126.1| PP-loop domain protein [Oceanithermus profundus DSM 14977]
          Length = 329

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 22  RVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R++VA+SGG DS V     A L   G+   G  +QL              + + +   R 
Sbjct: 49  RILVAVSGGKDSLVLWDTLARL---GHAATGFHIQL---------GIGDYSQRALEATRA 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +   V D  + F            A       C  C  + ++  +  V  + G 
Sbjct: 97  FAAARGLELIVVDVRQSF-----GLTIPQLAQATGRAACSGCGLSKRY-LMNRVAEEEGF 150

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +V+ATGH +               +    D    Q   L    ++ L     PL    + 
Sbjct: 151 NVVATGHNLDDEAATLLGNVSHWQL----DALVRQGPMLE--GREGLARRIKPLYTFTER 204

Query: 199 SVRDLAREMGLD 210
            V   A   G+ 
Sbjct: 205 EVAAYAFLAGIA 216


>gi|294340108|emb|CAZ88479.1| putative NH(3)-dependent NAD(+) synthetase [Thiomonas sp. 3As]
          Length = 332

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 75/237 (31%), Gaps = 51/237 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDSSV AAL  R  G   V G+ +     R +S    +           +V 
Sbjct: 38  VVLGLSGGVDSSVCAALAVRALGPQRVFGLLM---PERDSSDNSATLGG--------QVA 86

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   V +            +         P      N   K    +S     G + 
Sbjct: 87  QQLGIESTVENIAPALEAIGCYHWRDEAVRAVLP----GYNAQWKIKLAISGGLAGGINH 142

Query: 141 L--------------------------ATGHYIRSR---LYVGDDGKRRRIMCRPMDLER 171
                                      AT H  R R    Y   D     ++  P  LE 
Sbjct: 143 FKIIAQAPDGQMHEARLPLREYLQIVAATNHKQRLRKTLEYFHADRLNYAVIGTPNRLEY 202

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD--IADKSDSQDICFVQQG 226
           DQ +F+             P+  + K  V  LAR +GL   + + + + D   + QG
Sbjct: 203 DQGFFVKNGDG---SADLKPIAHLYKTQVYALARHLGLPDAVCNAAPTTDTYSLPQG 256


>gi|294811631|ref|ZP_06770274.1| Argininosuccinate synthase [Streptomyces clavuligerus ATCC 27064]
 gi|294324230|gb|EFG05873.1| Argininosuccinate synthase [Streptomyces clavuligerus ATCC 27064]
          Length = 404

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + +  G +VI V                   G+D+   R+  
Sbjct: 11  RVVLAYSGGLDTSVAIGWIAEETGAEVIAV------------AVDVGQGGEDLDVIRKRA 58

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F     +P   + A      P V   +R      L++  ++  A
Sbjct: 59  LACGAVEAEVADAKDEFAEEYCLPAIKANARYMDRYPLVSALSRPAIVKHLVAAAKKHDA 118

Query: 139 DVLATG 144
            ++A G
Sbjct: 119 SIVAHG 124


>gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
 gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
          Length = 408

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 46/222 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+VA+SGGVDS V+   L + G+DV GV    +  R+AS  +              V 
Sbjct: 2   KKVLVAVSGGVDSIVLLDRLVKQGWDV-GVAHVHHGLREASDEE--------YTFVAHVA 52

Query: 81  DTINVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            +  V+ +     ++E           + Y                 +     V  + G 
Sbjct: 53  ASYQVAFHGTRLHFQE-------GASQAHYRKAR-------------YHFFEDVMNEHGY 92

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFPLGDM 195
           D LAT H+    L           + R +   +          ++++     L  PL   
Sbjct: 93  DTLATAHHADDVLE-----TVLIQLHRNVIEVK-------GIPERRVFGRGTLIRPLLKE 140

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
            K  + + AR+  L   + + +Q++ +++     +++ R+  
Sbjct: 141 TKAQLIEYARKNELAWREDATNQEVTYLRNRIRHEIIPRLKQ 182


>gi|164659440|ref|XP_001730844.1| hypothetical protein MGL_1843 [Malassezia globosa CBS 7966]
 gi|159104742|gb|EDP43630.1| hypothetical protein MGL_1843 [Malassezia globosa CBS 7966]
          Length = 427

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + RV++A SGG+D+S + A L  +GY+VI   +                  +D    R 
Sbjct: 5   SNGRVLLAYSGGLDTSTILAWLIDEGYEVIA-YMAN------------VGQEEDFDSVRE 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                    ++  D    F   +I P   + A  E          R V    ++    ++
Sbjct: 52  KALKCGAKEFILDDVRREFVEELIFPAVQANAIYEDVYLLGTSLARPVIARGMIETAEKM 111

Query: 137 GADVLATG 144
             + ++ G
Sbjct: 112 KCEYVSHG 119


>gi|110669078|ref|YP_658889.1| GMP synthase subunit B [Haloquadratum walsbyi DSM 16790]
 gi|109626825|emb|CAJ53293.1| GMP synthase, subunit B (glutamine-hydrolyzing) [Haloquadratum
           walsbyi DSM 16790]
 gi|148508177|gb|ABQ75968.1| GMP synthase, subunit B (glutamine-hydrolyzing) [uncultured
           haloarchaeon]
          Length = 305

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 44/204 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++D    +   V+A+SGGVDSSV AAL     Y  IG  L          RKG     +D
Sbjct: 14  EIDAAIGEDNAVIALSGGVDSSVSAALA----YKAIGDQLTPVYVDTGLMRKGETKQVKD 69

Query: 73  ---VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF 126
                D          S  V D ++RF  +   V  P    +  GE              
Sbjct: 70  TFAYMD----------SLRVVDAQDRFFESLAGVTDPEEKRHVIGEQF-----------I 108

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            +         AD L  G     R+    + K    +    D+                 
Sbjct: 109 REFEEEAHAANADYLVQGTIYPDRIESEGNIKSHHNVGGLPDVV-------------DFE 155

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  P+ ++ K+ VR++ARE+ LD
Sbjct: 156 GIVEPVRELYKDEVREVARELDLD 179


>gi|317009655|gb|ADU80235.1| GMP synthase [Helicobacter pylori India7]
          Length = 508

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|289424975|ref|ZP_06426754.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK187]
 gi|289154674|gb|EFD03360.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK187]
          Length = 524

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 224 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +           AG T     +  R +           V +
Sbjct: 275 VAAT-GADLVVADESQRFLD---------VLAGVT---DPETKRKIIGREFIRTFEDVAK 321

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 322 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 374

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 375 RTLFKDEVRAVGLELGLP 392


>gi|327398195|ref|YP_004339064.1| GMP synthase [Hippea maritima DSM 10411]
 gi|327180824|gb|AEA33005.1| GMP synthase (glutamine-hydrolyzing) [Hippea maritima DSM 10411]
          Length = 506

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 68/206 (33%), Gaps = 43/206 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +  KD RV+ A+SGGVDSSVVA L+ +  G   +GV                     +
Sbjct: 204 IKQTVKDKRVIGAVSGGVDSSVVAVLMNKAIGDRFVGVF-----------VNTGLLRKNE 252

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
                 +   +NV+    D  E F      +  P       G T                
Sbjct: 253 PEYVLNLFKKLNVNIRYEDASELFLERLKGIEDPEKKRKIIGHTF-----------IDVF 301

Query: 130 LSVTRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
             + ++   A+ LA        I S    G     +                +    +  
Sbjct: 302 AKIAKEYNNAEFLAQGTLYPDIIESVSVKGPSATIKSHHN------------VGGLPKDL 349

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR L R++G+D
Sbjct: 350 NFKLIEPLRELFKDEVRQLGRQLGID 375


>gi|325144442|gb|EGC66742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240013]
          Length = 445

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 24  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 77

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 78  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 122 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 171 LLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 223


>gi|306831323|ref|ZP_07464483.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426559|gb|EFM29671.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 520

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 32/204 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     L   ++ K   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDLQISEIRKKVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 +  
Sbjct: 264 RKGEGDQVMN-------MLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRK------IIG 310

Query: 121 NRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           N  V  S       +L G D LA G      +  G D  +     +           +  
Sbjct: 311 NEFV--SVFDDEASKLKGVDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGG 358

Query: 180 TTQQQLCDLRFPLGDMKKESVRDL 203
             +    +L  PL  + K+ VR L
Sbjct: 359 LPEDMQFELIEPLNTLFKDEVRAL 382


>gi|163757385|ref|ZP_02164474.1| argininosuccinate synthase [Hoeflea phototrophica DFL-43]
 gi|162284887|gb|EDQ35169.1| argininosuccinate synthase [Hoeflea phototrophica DFL-43]
          Length = 409

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G ++  AR+ 
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGDELGPARKK 54

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
            + + +     Y+ D  E F    + P   +       Y  G +    +   R      L
Sbjct: 55  AELMGIPDKNIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKR------L 108

Query: 130 LSVTRQLGADVLATG 144
           + +  + GAD +A G
Sbjct: 109 VEIAEETGADAIAHG 123


>gi|71892299|ref|YP_278033.1| GMP synthase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|91206795|sp|Q492E5|GUAA_BLOPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71796405|gb|AAZ41156.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 525

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 33/204 (16%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL--YNSRKASKRKGSCC 68
           +D      + +VV+  SGG+DS V A LL+R  G+  I + +     ++ +  + K  C 
Sbjct: 219 MDTRVKVGNDKVVLGFSGGIDSLVTALLLRRAIGHQFICIYIDNGLLSNYEFDRIKNFC- 277

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                         +N +  +    +         F ++      P       R +    
Sbjct: 278 -------------ALNCNLDIIYLSQE------QRFFNALIGVNDPE----KKRKIIGRV 314

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ--SYFLFATTQQQLC 186
              V  +   +++A     +  +Y  D  +    +    ++ +           T  QL 
Sbjct: 315 FTEVFEEQIRNLVAVKWLAQGTIYS-DVIESGVSLSSFKNVIKSHHNVGGFCGITDIQL- 372

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
               P+ ++ K+ VR +  ++G+ 
Sbjct: 373 --LEPIRNLFKDEVRSIGLDLGIP 394


>gi|303244453|ref|ZP_07330788.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
 gi|302485151|gb|EFL48080.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
          Length = 306

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 21/171 (12%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           +L  +   ++M + + +SGG DS V+A +L    Y  I       N       +G     
Sbjct: 38  TLGKNIIKQNMTIGMGLSGGKDSLVMAYILNEF-YKPIP----NSNIIALIVDEGIEGFR 92

Query: 71  QD-VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTV 124
           +D V  A + C+  ++++ +  ++E      I                T  PC  C   +
Sbjct: 93  KDGVNMAIKFCEEYDIAYKIATFKE-----YIGYDLDELVKIAKDKNLTMNPCSFCG-VI 146

Query: 125 KFSDLLSVTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLER 171
           +   L  +      + LA GH      ++ +    +G  +++     D   
Sbjct: 147 RRKILNKMALNEKCNYLAIGHNLDDMAQAIMMNYIEGDVKKLAILGHDANN 197


>gi|196049679|pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
 gi|196049680|pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
          Length = 697

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 242 KVLVLLSGGVDSTVCTALLNRALNQEQ---VIAVHIDN--------GFMRKRESQSVEEA 290

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 291 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 345

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 346 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 400

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 401 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 433


>gi|194378708|dbj|BAG63519.1| unnamed protein product [Homo sapiens]
          Length = 594

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 139 KVLVLLSGGVDSTVCTALLNRALDQEQ---VIAVHIDN--------GFMRKRESQSVEEA 187

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 188 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 242

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 243 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 297

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 298 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 330


>gi|194374669|dbj|BAG62449.1| unnamed protein product [Homo sapiens]
          Length = 642

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 187 KVLVLLSGGVDSTVCTALLNRALNQEQ---VIAVHIDN--------GFMRKRESQSVEEA 235

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 236 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 290

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 291 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 345

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 346 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 378


>gi|194098553|ref|YP_002001615.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945]
 gi|193933843|gb|ACF29667.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945]
 gi|317164226|gb|ADV07767.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 445

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 24  FPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPR 73

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  R  CD + V           +  V        AA              ++++
Sbjct: 74  ADDWADFCRNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAE 117

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 118 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 166

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 167 IWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 223


>gi|62898359|dbj|BAD97119.1| guanine monophosphate synthetase variant [Homo sapiens]
          Length = 693

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQEQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 429


>gi|59801231|ref|YP_207943.1| hypothetical protein NGO0820 [Neisseria gonorrhoeae FA 1090]
 gi|75432494|sp|Q5F8F6|TILS_NEIG1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|59718126|gb|AAW89531.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 426

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPR 54

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  R  CD + V           +  V        AA              ++++
Sbjct: 55  ADDWADFCRNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAE 98

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             + A        +
Sbjct: 99  FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGI 147

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 148 IWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|42523405|ref|NP_968785.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100]
 gi|61216531|sp|Q6MLS8|TILS_BDEBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39575611|emb|CAE79778.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100]
          Length = 316

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 75/204 (36%), Gaps = 42/204 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR- 77
           +D +++VA+SGG DS    ALL+     +  V  +           G     +   +A+ 
Sbjct: 24  QDKKILVALSGGTDS---VALLRS----LTKVHKKNLL-GACYFHHGEDSNQEYRKEAQE 75

Query: 78  ---RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              ++C  + +  Y     +  ++       + Y             R +++  L  + +
Sbjct: 76  FCEKLCKKLEIEFYPLRASQLAKSE------AEY-------------RELRYEALDRLKK 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G +++ATGH+    L       R   + R       Q +      +  L     PL +
Sbjct: 117 EQGFELVATGHHRDDLLE-----TRLIRLIRGTGA---QGFAAMHVLRDGLFR---PLLE 165

Query: 195 MKKESVRDLAREMGLDIADKSDSQ 218
           + K+ ++   RE  L   +   ++
Sbjct: 166 ISKKELKKYLREERLRSFEDPTNK 189


>gi|4504035|ref|NP_003866.1| GMP synthase [glutamine-hydrolyzing] [Homo sapiens]
 gi|1708072|sp|P49915|GUAA_HUMAN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|595410|gb|AAA60331.1| guanosine 5'-monophosphate synthetase [Homo sapiens]
 gi|15082535|gb|AAH12178.1| Guanine monphosphate synthetase [Homo sapiens]
 gi|119599147|gb|EAW78741.1| guanine monphosphate synthetase, isoform CRA_b [Homo sapiens]
 gi|124000223|gb|ABM87620.1| guanine monphosphate synthetase [synthetic construct]
 gi|157929256|gb|ABW03913.1| guanine monphosphate synthetase [synthetic construct]
 gi|158256440|dbj|BAF84193.1| unnamed protein product [Homo sapiens]
 gi|164691081|dbj|BAF98723.1| unnamed protein product [Homo sapiens]
          Length = 693

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQEQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 429


>gi|300710242|ref|YP_003736056.1| NAD synthetase [Halalkalicoccus jeotgali B3]
 gi|299123925|gb|ADJ14264.1| NAD synthetase [Halalkalicoccus jeotgali B3]
          Length = 262

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 42/187 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G + + G+ L            G   +  ++ DA RV  
Sbjct: 35  VLGLSGGIDSTLTAYLAVEALGKENLRGLVL-----------PGEVSSEANMSDAERVAR 83

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + + V +      N ++  F S+    E     V  N   +   +L+       + +
Sbjct: 84  DLEIEYDVIEI-----NPIVESFVSAVPEVEGDQVAVG-NSRARVRAVLNYLLANHENRI 137

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   R+   VG   K         D   D                  P+G++ K+ VR
Sbjct: 138 VLGTGNRAEAAVGYYTKY-------GDGAVD----------------CLPIGNLYKQQVR 174

Query: 202 DLAREMG 208
            LA  +G
Sbjct: 175 QLAHHVG 181


>gi|229550585|ref|ZP_04439310.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis ATCC 29200]
 gi|229304304|gb|EEN70300.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis ATCC 29200]
          Length = 520

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|225571441|ref|ZP_03780437.1| hypothetical protein CLOHYLEM_07539 [Clostridium hylemonae DSM
           15053]
 gi|225159917|gb|EEG72536.1| hypothetical protein CLOHYLEM_07539 [Clostridium hylemonae DSM
           15053]
          Length = 515

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         +     
Sbjct: 218 KVLCALSGGVDSSVAAVMLSKAIGSQLTCVF---VDHGLLRKNEGDEVEAVFGPEG---- 270

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +++    + +ERF      V  P       GE                     R++G
Sbjct: 271 -HYDLNFIRVNAQERFYERLAGVSEPEDKRKIIGEEF-----------IRVFEEEARKIG 318

Query: 138 A-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           A D L  G      +  G  G+          + +               ++  PL D+ 
Sbjct: 319 AVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR    EMG+ 
Sbjct: 371 KDEVRKAGLEMGIP 384


>gi|217966619|ref|YP_002352125.1| NAD+ synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217335718|gb|ACK41511.1| NAD+ synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 526

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           + +   L   D  K     + V+ +SGG+DS++VA + +   G + V+GV+L        
Sbjct: 254 LYDGLVLGVRDFIKKSGFQKAVIGLSGGIDSALVACIAREALGEENVLGVSL-------- 305

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96
                   + + + DA ++   + +   +    + F
Sbjct: 306 ---PSIYTSRESIEDAEKLSKNLGIEFRIIPISDIF 338


>gi|146329098|ref|YP_001209124.1| NAD+ synthetase [Dichelobacter nodosus VCS1703A]
 gi|146232568|gb|ABQ13546.1| NAD+ synthetase [Dichelobacter nodosus VCS1703A]
          Length = 248

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 48/192 (25%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + +SGG+DS+V   LL + G  V  + L                   D  DA  V    N
Sbjct: 29  LGVSGGIDSAVCLHLLAKTGKPVQALVL------------PINANANDCEDAELVLKNAN 76

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN---RTVKFSDLLSVTRQLGADVL 141
           +S  +   ++ +            AA  T  P ++ +     V   +L++  R +    +
Sbjct: 77  ISGNIIALDDVYT-----------AAQNTLAPVLNRDYERMPVLNGNLMARLRMVMLYTV 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           A  H     + VG D      +    +  D   D                  PL  + K 
Sbjct: 126 AQSH---RSVVVGTDNAVEYYLGYFTKFGDGACD----------------ILPLAKLTKS 166

Query: 199 SVRDLAREMGLD 210
            V  LA+ +G+ 
Sbjct: 167 EVGQLAKALGVP 178


>gi|121634879|ref|YP_975124.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18]
 gi|120866585|emb|CAM10336.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18]
          Length = 445

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 24  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVPEALHIH----------HGLSPR 73

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 74  ADDWADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 117

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G D+LA  H+        DD     ++             + A        +
Sbjct: 118 FAEK----GFDILALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGI 166

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 167 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 223


>gi|159037510|ref|YP_001536763.1| argininosuccinate synthase [Salinispora arenicola CNS-205]
 gi|189046401|sp|A8LYQ9|ASSY_SALAI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157916345|gb|ABV97772.1| Argininosuccinate synthase [Salinispora arenicola CNS-205]
          Length = 403

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L    G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAEQTGAEVIAV------------AVDVGQGGEDLDAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + +      P V   +R +    L++  R  G 
Sbjct: 52  LDCGAVESEVVDARDEFAAEYCLPAVRANSLYMDRYPLVSALSRPLIVKHLVAAARTHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM-- 195
            +++ G                   C       DQ  F            +  P  D   
Sbjct: 112 TIVSHG-------------------CTGK--GNDQVRFEAGLGALAPDLRIVAPARDFAW 150

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++     A E GL I   + S
Sbjct: 151 TRDKAIAFAEEKGLPIDVTAKS 172


>gi|325198322|gb|ADY93778.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis G2136]
          Length = 426

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVPEALHIH----------HGLSPR 54

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 55  ADDWADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 98

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G D+LA  H+        DD     ++             + A        +
Sbjct: 99  FAEK----GFDILALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGI 147

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 148 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|325132247|gb|EGC54941.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M6190]
          Length = 436

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVPEALHIH----------HGLSPR 64

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 65  ADDWADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G D+LA  H+        DD     ++             + A        +
Sbjct: 109 FAEK----GFDILALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGI 157

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 158 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|315230856|ref|YP_004071292.1| ATPase [Thermococcus barophilus MP]
 gi|315183884|gb|ADT84069.1| ATPase [Thermococcus barophilus MP]
          Length = 201

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 43/216 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V    SGG DSS+ A +L++ GY+V  VT+                   +   A+   
Sbjct: 1   MEVYHLYSGGKDSSLAAWILQKLGYEVKLVTISF-------------GLLDNWKYAKETA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D +  +H V          ++   A        P   +   + +    L  +  +   + 
Sbjct: 48  DRLGFNHEVV----VLGREILEEAAEMCIRDGHPSNAI---QFIHEKALEEIASRKDVER 100

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           ++ G   R       D +R R +    D    Q Y                LG      +
Sbjct: 101 ISDGTR-RDDRVPFLDLRRTRSL---EDRFNVQ-YI----------RPLLGLGYKT---I 142

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
           R+LA +  L I +  +S+ +   ++  Y   ++ + 
Sbjct: 143 RELAEK--LFIIEIRESEKL---EKSDYEVELRHLL 173


>gi|113208240|dbj|BAF03524.1| argininosuccinate synthetase [Porphyra yezoensis]
 gi|115345228|dbj|BAF33293.1| argininosuccinate synthetase [Porphyra yezoensis]
          Length = 438

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +VV+A SGG+D+SV+   L+  GY+VI                       D   AR 
Sbjct: 2   SKGKVVLAYSGGLDTSVILKWLQDQGYEVICF-------------IADVGQTDDFEAARV 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVD 119
              ++     YV +  + F    I P         S Y  G +   PC+ 
Sbjct: 49  KALSLGATKVYVENLRKEFVTDFIFPAVKVNAIYESRYLLGTSLARPCIA 98


>gi|332157910|ref|YP_004423189.1| hypothetical protein PNA2_0268 [Pyrococcus sp. NA2]
 gi|331033373|gb|AEC51185.1| hypothetical protein PNA2_0268 [Pyrococcus sp. NA2]
          Length = 323

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 29/202 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS V+  LL    K+  ++++ +T+                  + V 
Sbjct: 46  KGERIGVAVSGGKDSVVLLHLLAKLRKKFPFEIVAITI---------DEGIKGYRDKSVE 96

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSDL 129
            A+R  + + V H+++ +        I              GE    C  C    ++  L
Sbjct: 97  VAKRNAELLGVEHHIYRF-----KDYIGFTLDETVQIMGERGERLGACSYCGVWRRW-LL 150

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +L  D LA G  +   + V         + R       ++   +    + L    
Sbjct: 151 NKAAEELKVDKLALGLNLDDEVQV-----FLMNLMRGDVARLGRTGPYYEVIHEGLVPRI 205

Query: 190 FPLGDMKKESVRDLAREMGLDI 211
            PL ++ ++ +   A    +++
Sbjct: 206 KPLREVPEKEIVLYAVLNNIEV 227


>gi|288560676|ref|YP_003424162.1| GMP synthase subunit B GuaAb [Methanobrevibacter ruminantium M1]
 gi|288543386|gb|ADC47270.1| GMP synthase subunit B GuaAb [Methanobrevibacter ruminantium M1]
          Length = 308

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 36/192 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + ++A+SGGVDSSV + L +   G ++  V +  +   +  + +  C   +       
Sbjct: 21  DEKTIIALSGGVDSSVCSVLTQEAIGDNLTAVFV-NHGLLREGEAEQVCSVFE------- 72

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + +N  +   D  + F         S  A  E P         V         + + A
Sbjct: 73  --ERLNFKY--IDASDEF--------LSELAGVEDPEEKRKIIGRVFIEVFEREAQAVDA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L  G      +    + K    M                     +  +  P+ D+ K+
Sbjct: 121 KYLVQGTIAPDWIETEGEIKTHHNMA---------------LPSGMVLKVVEPVRDLYKD 165

Query: 199 SVRDLAREMGLD 210
            VR +  E+GL 
Sbjct: 166 EVRLVGTELGLP 177


>gi|297526060|ref|YP_003668084.1| GMP synthase, large subunit [Staphylothermus hellenicus DSM 12710]
 gi|297254976|gb|ADI31185.1| GMP synthase, large subunit [Staphylothermus hellenicus DSM 12710]
          Length = 529

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 28/190 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+VA+SGGVDS+V A L+K+  G  ++ V                     +V +     
Sbjct: 236 KVLVAVSGGVDSTVTALLVKKAVGKRLVPVF-----------VNHGLMREGEVEEVLENL 284

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ ++    D   RF               E     +       FSD++   R      
Sbjct: 285 RSLGINPIYIDASNRFLER-----LKGIRDCEEKRRIIGEEFARIFSDIVR--RDKDIKW 337

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           LA G    +   V + G          D  +   + +          +  PL ++ K+ V
Sbjct: 338 LAQG---TTYPDVIESGSTP-----GSDRIKSH-HNVAGLPDWLGLKVLEPLRELYKDEV 388

Query: 201 RDLAREMGLD 210
           R LA  +G+ 
Sbjct: 389 RRLALHLGVP 398


>gi|262306063|gb|ACY45624.1| gln amidotransferase [Libinia emarginata]
          Length = 194

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI V +     RK    +               
Sbjct: 41  KVLMLVSGGVDSTVCAALLHKALAEEQVIAVHIDNGFMRKNESLQVEQSL---------- 90

Query: 80  CDTINVSHYVFDYEERFRNAV 100
              + +   V +   +F + V
Sbjct: 91  -RRLGLKLTVVNARLQFYDGV 110


>gi|224097614|ref|XP_002311011.1| predicted protein [Populus trichocarpa]
 gi|222850831|gb|EEE88378.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +  G     +    A   C
Sbjct: 74  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGVGELEGLEQKAKASGAC 127

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 128 Q-----LVVKDLQEEFVRDFIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDVA 176

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 177 KEVGADAVAHG 187


>gi|77358707|ref|YP_338292.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|77358709|ref|YP_338291.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|218768194|ref|YP_002342706.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491]
 gi|61216742|sp|Q9JUE9|TILS_NEIMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|73919876|sp|Q4W568|TILS_NEIMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|66731914|gb|AAY52148.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|66731931|gb|AAY52164.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|121052202|emb|CAM08525.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491]
 gi|325134335|gb|EGC56981.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M13399]
 gi|325200183|gb|ADY95638.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis H44/76]
 gi|325206037|gb|ADZ01490.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M04-240196]
          Length = 426

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|217032288|ref|ZP_03437785.1| hypothetical protein HPB128_142g36 [Helicobacter pylori B128]
 gi|216946054|gb|EEC24667.1| hypothetical protein HPB128_142g36 [Helicobacter pylori B128]
          Length = 433

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 156 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 205

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F +    V  P       GET +   +  +  K    L
Sbjct: 206 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 262

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 263 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 310

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 311 PLRELFKDEVRLLGKELG 328


>gi|164686251|ref|ZP_02210281.1| hypothetical protein CLOBAR_02689 [Clostridium bartlettii DSM
           16795]
 gi|164601853|gb|EDQ95318.1| hypothetical protein CLOBAR_02689 [Clostridium bartlettii DSM
           16795]
          Length = 287

 Score = 52.9 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A +   L++ G   +D++ + +          +       ++
Sbjct: 52  EGDKIAVAISGGKDSLLMAKMFQELQKHGQVKFDLVFLAM-----DPGYHKNIRQLLEEN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+   +FD    F   V    A  Y       PC  C   ++   L + 
Sbjct: 107 -------CEYLNIPLTIFD-TNIF--DVAGEIAEDY-------PCYMC-ARMRRGALYNK 148

Query: 133 TRQLGADVLATGHY 146
             +LG + LA GH+
Sbjct: 149 AEELGCNKLALGHH 162


>gi|325142381|gb|EGC64790.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis 961-5945]
          Length = 426

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVPEALHIH----------HGLSPR 54

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 55  ADDWADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 98

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G D+LA  H+        DD     ++             + A        +
Sbjct: 99  FAEK----GFDILALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGI 147

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 148 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|221124512|ref|XP_002166691.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260221446|emb|CBA30017.1| GMP synthase [glutamine-hydrolyzing] [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 548

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 40/200 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                     D+     V  
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---------VDHGLLRLNEGDMVMDMFVG- 278

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR---- 134
            ++      D  ++F      V  P A     G   +          F       R    
Sbjct: 279 KLHAKVIRVDASDQFLGHLSGVSDPEAKRKIIGREFVEV--------FKA--EAARLTAA 328

Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRF 190
              + GA  LA G      +  G    ++ +  +           +     +QL   L  
Sbjct: 329 GESKNGAKWLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLE 380

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L   +GL 
Sbjct: 381 PLRELFKDEVRELGVALGLP 400


>gi|146306426|ref|YP_001186891.1| argininosuccinate synthase [Pseudomonas mendocina ymp]
 gi|166221009|sp|A4XS43|ASSY_PSEMY RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145574627|gb|ABP84159.1| argininosuccinate synthase [Pseudomonas mendocina ymp]
          Length = 405

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVKEIYIDDLREEFVRDFVYPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|82702172|ref|YP_411738.1| argininosuccinate synthase [Nitrosospira multiformis ATCC 25196]
 gi|119361297|sp|Q2YA75|ASSY_NITMU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|82410237|gb|ABB74346.1| argininosuccinate synthase [Nitrosospira multiformis ATCC 25196]
          Length = 407

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 64/209 (30%), Gaps = 55/209 (26%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G++V  AR   
Sbjct: 7   KKVVLAFSGGLDTSVILKWLQDT-YRCEVVTF-----------TADIGQGEEVEPARAKA 54

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   ++ D  E F    + P           Y  G +    +   R +       +
Sbjct: 55  KQLGVREIFIDDLREEFVRDFVFPMFRANTLYEGEYLLGTSIARPLIAKRQI------EI 108

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLR 189
            R+ GAD ++ G                           DQ  F        L     + 
Sbjct: 109 ARETGADAVSHG---------------------ATGKGNDQVRF--ELGYYALQPDIRVI 145

Query: 190 FPL--GDMKKES-VRDLAREMGLDIADKS 215
            P    D+     +   A + G+ +  K 
Sbjct: 146 APWREWDLTSREKLLKYAEQHGIPVEMKK 174


>gi|15679265|ref|NP_276382.1| argininosuccinate synthase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|5915701|sp|O27322|ASSY_METTH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|2622367|gb|AAB85743.1| argininosuccinate synthase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 399

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV   LL+             YN    +          ++     V  
Sbjct: 8   KVVLAFSGGLDTSVCIKLLEEK-----------YNMEVITACVDVGQPRDEIERPAMVAK 56

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            +    HY  D    F    I P   + A  E   P      R +    ++ V  + GA 
Sbjct: 57  ELGNYRHYTVDARREFAEDYIFPAIKANAVYE-GYPLSTALARPLIAKKIVEVAEKEGAS 115

Query: 140 VLATG 144
            +A G
Sbjct: 116 AIAHG 120


>gi|254252086|ref|ZP_04945404.1| GMP synthase PP-ATPase subunit [Burkholderia dolosa AUO158]
 gi|124894695|gb|EAY68575.1| GMP synthase PP-ATPase subunit [Burkholderia dolosa AUO158]
          Length = 539

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGK--------------- 266

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G    +   +  R +   + + V     ++
Sbjct: 267 ------MVLDMFEGRLHAKVVHVDASEQFLGRLAGVADPEAKRKIIGREFVEVFQAEAKK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 321 LSKAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 374 LFKDEVRELGVALGLP 389


>gi|325138171|gb|EGC60742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ES14902]
          Length = 426

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVPEALHIH----------HGLSPR 54

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 55  ADDWADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 98

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G D+LA  H+        DD     ++             + A        +
Sbjct: 99  FAEK----GFDILALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGI 147

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 148 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|319947042|ref|ZP_08021276.1| GMP synthase [Streptococcus australis ATCC 700641]
 gi|319747090|gb|EFV99349.1| GMP synthase [Streptococcus australis ATCC 700641]
          Length = 521

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 208 TMDNFIEMQIKQIREKVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHG 262

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG      D+     +     ++    D  +RF + +                 V  
Sbjct: 263 LLRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV 317

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 318 -----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 360

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 PEDMQFELIEPLNTLYKDEVRALGTELGMP 390


>gi|238922390|ref|YP_002935904.1| hypothetical protein EUBELI_20626 [Eubacterium eligens ATCC 27750]
 gi|238874062|gb|ACR73770.1| Hypothetical protein EUBELI_20626 [Eubacterium eligens ATCC 27750]
          Length = 242

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 28/139 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN---SRKASKRKGSCCA 69
           D +   +  ++ V +SGG DS    ALL           +++ N    +K      +C  
Sbjct: 16  DYNMIEEGDKIAVGVSGGKDS---LALLHA---------MKILNRFYPKKFELYAITCNV 63

Query: 70  GQDVYD---ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           G +  D    R+ C++INV +   D        V               PC  C +  K 
Sbjct: 64  GFEGMDFTGVRKFCESINVPYEQVD--TEIAKIVFEDNKDER-------PCSLCAKLRK- 113

Query: 127 SDLLSVTRQLGADVLATGH 145
             +     +LG + +A  H
Sbjct: 114 GAMYKRLGELGINKIAYAH 132


>gi|226325767|ref|ZP_03801285.1| hypothetical protein COPCOM_03580 [Coprococcus comes ATCC 27758]
 gi|225205891|gb|EEG88245.1| hypothetical protein COPCOM_03580 [Coprococcus comes ATCC 27758]
          Length = 515

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RV++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 209 EIREKVGDGRVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKNEGDEVEAV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + +ER+ N           AG T  P  +  R +       
Sbjct: 266 FGPNGQ-----FDLNFIRVNAQERYYNK---------LAGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++GA + LA G      +  G  G    ++    ++     Y  F        
Sbjct: 309 IFEEEAKKIGAVEFLAQGTIYPDVVESGL-GGESAVIKSHHNVGGLPEYVDF-------K 360

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL D+ K+ VR    E+GL 
Sbjct: 361 EIIEPLRDLFKDEVRKAGLELGLP 384


>gi|315231443|ref|YP_004071879.1| NAD synthetase [Thermococcus barophilus MP]
 gi|315184471|gb|ADT84656.1| NAD synthetase [Thermococcus barophilus MP]
          Length = 254

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 49/183 (26%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+  A L  +  G D V+G+ +  Y +             QDV DA+ VC+T+ +++ +
Sbjct: 38  DSATTAFLAVKALGKDKVLGLIMPYYEN-------------QDVKDAKLVCETLGINYKI 84

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPC--VDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
            +         I P   ++       P      N  V+    L        ++L  G   
Sbjct: 85  IN---------IKPIVDAFEKSLDFEPDKITKGNVMVRTRMTLLYAHANQYNLLVLGTSN 135

Query: 148 RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           +S L  G             D   D +                PL ++ K  V ++A+ +
Sbjct: 136 KSELLTG------YYTKWG-DGASDYA----------------PLINLYKTEVWEIAKRL 172

Query: 208 GLD 210
           G+ 
Sbjct: 173 GVP 175


>gi|262306053|gb|ACY45619.1| gln amidotransferase [Heterometrus spinifer]
          Length = 196

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + RV++ +SGGVDS+V AALL +   +  VI + +     RK   R+             
Sbjct: 43  NNRVLMLVSGGVDSTVCAALLHKALKEDQVIAIHIDNGFMRKNESRQVEQSL-------- 94

Query: 78  RVCDTINVSHYVFDYEERFRN 98
                + +   V +    F N
Sbjct: 95  ---RKLGLKLQVVNASHHFYN 112


>gi|220912271|ref|YP_002487580.1| argininosuccinate synthase [Arthrobacter chlorophenolicus A6]
 gi|254807503|sp|B8HGC9|ASSY_ARTCA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|219859149|gb|ACL39491.1| Argininosuccinate synthase [Arthrobacter chlorophenolicus A6]
          Length = 401

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 64/202 (31%), Gaps = 43/202 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    +    G +VI V             +G          A    
Sbjct: 4   RIVLAYSGGLDTSVAIGWIGEATGAEVIAV--------AVDVGQGGESLETIRQRA---- 51

Query: 81  DTIN---VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             +    V  YV D  + F N   +P   + A  +   P V   +R V    L+   R+ 
Sbjct: 52  --LGCGAVEAYVADARDEFANEYAMPTLKANALYQGHYPLVSAISRPVIVKHLVKAAREF 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD- 194
           GA  +A G                   C       DQ  F               P+ D 
Sbjct: 110 GATTVAHG-------------------CTGK--GNDQVRFEVGIQTLGPDLKCIAPVRDL 148

Query: 195 -MKKESVRDLAREMGLDIADKS 215
            + ++     A E GL I    
Sbjct: 149 ALTRDKAIAFAEEKGLPIETTK 170


>gi|15678737|ref|NP_275853.1| GMP synthase subunit B [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|2621797|gb|AAB85215.1| GMP synthetase, subunit B [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 311

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 44/196 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + ++A+SGGVDSSV + L  R     IG      ++  A           +    R+ 
Sbjct: 24  NEKAIIALSGGVDSSVASVLAGRA----IG------DNLTAVFVDHGLLREGEAEYVRKT 73

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
             + +N  +   D  E F              G T     +  R +     +     V  
Sbjct: 74  FSERLNFRY--IDASEEFLKE---------LEGVT---DPEEKRKIIGRVFIEVFERVAE 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++GA  L  G      +      K    +                     + ++  P+ +
Sbjct: 120 EIGARYLVQGTIAPDWIESEGQIKSHHNVA---------------LPHGLVLEIVEPIRE 164

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+GL 
Sbjct: 165 LYKDEVREIGLELGLP 180


>gi|256960703|ref|ZP_05564874.1| GMP synthase [Enterococcus faecalis Merz96]
 gi|293384761|ref|ZP_06630613.1| GMP synthase [Enterococcus faecalis R712]
 gi|293388022|ref|ZP_06632552.1| GMP synthase [Enterococcus faecalis S613]
 gi|312908689|ref|ZP_07767630.1| GMP synthase protein [Enterococcus faecalis DAPTO 512]
 gi|312909163|ref|ZP_07768021.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
 gi|256951199|gb|EEU67831.1| GMP synthase [Enterococcus faecalis Merz96]
 gi|291077938|gb|EFE15302.1| GMP synthase [Enterococcus faecalis R712]
 gi|291082580|gb|EFE19543.1| GMP synthase [Enterococcus faecalis S613]
 gi|310625370|gb|EFQ08653.1| GMP synthase protein [Enterococcus faecalis DAPTO 512]
 gi|311290505|gb|EFQ69061.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|254457915|ref|ZP_05071342.1| exsB protein [Campylobacterales bacterium GD 1]
 gi|207085308|gb|EDZ62593.1| exsB protein [Campylobacterales bacterium GD 1]
          Length = 224

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          N ++ + +  MSGG+DS++ A ++K  GY++I +    YN R   K++  C         
Sbjct: 2  NEQNKKALCVMSGGMDSTLSAYMMKNSGYEIIALHF-NYNQR-TQKKELECFH------- 52

Query: 77 RRVCDTINVSH-YVFDY 92
           ++C+ ++V   Y+ D 
Sbjct: 53 -KICEDLDVKEKYILDL 68


>gi|148992672|ref|ZP_01822340.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP9-BS68]
 gi|168483941|ref|ZP_02708893.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1873-00]
 gi|182684403|ref|YP_001836150.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae CGSP14]
 gi|303254394|ref|ZP_07340501.1| GMP synthase [Streptococcus pneumoniae BS455]
 gi|303259041|ref|ZP_07345020.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303261721|ref|ZP_07347668.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264394|ref|ZP_07350314.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS397]
 gi|303267538|ref|ZP_07353386.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS457]
 gi|303269320|ref|ZP_07355093.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS458]
 gi|226739754|sp|B2IQR1|GUAA_STRPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|147928689|gb|EDK79703.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP9-BS68]
 gi|172042797|gb|EDT50843.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1873-00]
 gi|182629737|gb|ACB90685.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae CGSP14]
 gi|301802175|emb|CBW34920.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae
           INV200]
 gi|302598641|gb|EFL65680.1| GMP synthase [Streptococcus pneumoniae BS455]
 gi|302637301|gb|EFL67789.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302639984|gb|EFL70440.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302641150|gb|EFL71524.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS458]
 gi|302642939|gb|EFL73238.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS457]
 gi|302646206|gb|EFL76433.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS397]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + K   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRKTVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|89891099|ref|ZP_01202607.1| argininosuccinate synthase [Flavobacteria bacterium BBFL7]
 gi|89516743|gb|EAS19402.1| argininosuccinate synthase [Flavobacteria bacterium BBFL7]
          Length = 398

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             + ++V+A SGG+D+S  A  L +  GY+V  V                    +D+   
Sbjct: 2   NNNKKLVIAYSGGLDTSYCAVYLSQDLGYEVHAV-----------CVNTGGFTQEDLKTI 50

Query: 77  RRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
                 + VS     D    F + V+              P  V   R V+  +++   +
Sbjct: 51  ESNAYKMGVSTFKAIDAVSTFYDKVVKYLIYGNVLKNNTYPLSVSAERIVQAIEIIEYAK 110

Query: 135 QLGADVLATG 144
            + A  +A G
Sbjct: 111 TIDAQFIAHG 120


>gi|330502363|ref|YP_004379232.1| argininosuccinate synthase [Pseudomonas mendocina NK-01]
 gi|328916649|gb|AEB57480.1| argininosuccinate synthase [Pseudomonas mendocina NK-01]
          Length = 405

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVKEIYIDDLREEFVRDFVYPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|315171357|gb|EFU15374.1| GMP synthase protein [Enterococcus faecalis TX1342]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKALGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|260892778|ref|YP_003238875.1| GMP synthase, large subunit [Ammonifex degensii KC4]
 gi|260864919|gb|ACX52025.1| GMP synthase, large subunit [Ammonifex degensii KC4]
          Length = 510

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 56/204 (27%), Gaps = 57/204 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R + A+SGGVDS+V A L+ R  G  +  V                     +    R   
Sbjct: 218 RALAALSGGVDSTVAAVLVHRAIGNRLTCVF-----------VNHGLLRKGEAESVRAAV 266

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + V     D   RF      V+ P       G                      R+LG
Sbjct: 267 QALGVPLVYVDASARFLAQLEGVVDPEEKRRRVGHEF-----------IRVFEEEARKLG 315

Query: 138 A-----------DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                       DV+ +G  +  R+    +                           +  
Sbjct: 316 KVRFLVQGTLYPDVIESGTALSHRIKSHHNVGGLPE--------------EMELELLEPL 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
              F      K+ VR+L +E+GL 
Sbjct: 362 RYLF------KDEVRELGKELGLP 379


>gi|169351304|ref|ZP_02868242.1| hypothetical protein CLOSPI_02084 [Clostridium spiroforme DSM 1552]
 gi|169292366|gb|EDS74499.1| hypothetical protein CLOSPI_02084 [Clostridium spiroforme DSM 1552]
          Length = 515

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         +   
Sbjct: 216 NGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVEEVFGPNG-- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                 ++    + ++R+ + +         A       +     ++        +++G 
Sbjct: 271 ---HYELNFIRVNAQQRYYDKLKG--IEEPEAKRK----IIGEEFIRV--FEEEAKKIGT 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
            D L  G      +  G  G+    + +           +          ++  PL D+ 
Sbjct: 320 VDFLVQGTIYPDVVESGLGGE--SAVIKSHHN-------VGGLPDAVDFKEIIEPLRDLF 370

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+G+ 
Sbjct: 371 KDEVRKVGLELGIP 384


>gi|325662746|ref|ZP_08151340.1| GMP synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086471|ref|ZP_08335550.1| GMP synthase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470983|gb|EGC74211.1| GMP synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330410529|gb|EGG89957.1| GMP synthase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 514

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         +   
Sbjct: 215 NGKVLCALSGGVDSSVAAVMLSKAVGEQLTCVF---VDHGLLRKNEGDEVEAVFGPEG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +++    + +ERF   +         +       +     ++        +++GA
Sbjct: 270 ---NYDLNFIRVNAQERFYEKLKG--VEEPESKRK----IIGEEFIRV--FEEEAKKIGA 318

Query: 139 -DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G    ++    ++     Y  F        ++  PL D+ K
Sbjct: 319 VDFLVQGTIYPDVVESGL-GGESAVIKSHHNVGGLPEYVDF-------KEIIEPLRDLFK 370

Query: 198 ESVRDLAREMGLD 210
           + VR    E+G+ 
Sbjct: 371 DEVRKAGLELGIP 383


>gi|195952783|ref|YP_002121073.1| thiamine biosynthesis protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932395|gb|ACG57095.1| thiamine biosynthesis protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 345

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDV--Y 74
              + +V  SGG+DS + A  + K  G +V  +     +   +  +R G       +   
Sbjct: 3   HKPKALVLFSGGLDSQLAAVNISKIQGIEVKLIHFYTGFCITEHKRRLGIPNKDGKIPQN 62

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A +    + +   + D  + + N ++ P    +  G+   PC+DC   +    L  +  
Sbjct: 63  PALKAAADLELPIEIIDISQEYINVILNP---KFGYGKNINPCLDCRIFMLLK-LKEIME 118

Query: 135 QLGADVLATGHYIRSRLYVGD 155
           +   D +ATG  +  R     
Sbjct: 119 KENYDFIATGEVLGQRPMSQT 139


>gi|317488697|ref|ZP_07947236.1| arginosuccinate synthase [Eggerthella sp. 1_3_56FAA]
 gi|316912213|gb|EFV33783.1| arginosuccinate synthase [Eggerthella sp. 1_3_56FAA]
          Length = 464

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V+A SGG+D+SV    L+ +   DVI V           + +G       +   ++
Sbjct: 12  KDKAVLAYSGGLDTSVCIKWLQEEKNLDVIAVV-----GDVGQEHEG-------LEKIKQ 59

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  + F    +    ++ A  E   P V   +R +    L+    + 
Sbjct: 60  KALKTGAVECLVVDMRDVFAQDFLSKALAANALYENKYPLVSALSRPLISKHLVDAAHKF 119

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 120 GAKYIAHG 127


>gi|225872337|ref|YP_002753792.1| NAD+ synthetase [Acidobacterium capsulatum ATCC 51196]
 gi|225793431|gb|ACO33521.1| NAD+ synthetase [Acidobacterium capsulatum ATCC 51196]
          Length = 552

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRK 59
            + +A  L + D  +     RVVV +SGG+DS++VAA+  R  G + V G  +       
Sbjct: 276 ALLDALTLGTRDYVRKCGFSRVVVGLSGGIDSALVAAIAVRALGAENVHGYGM-----PS 330

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98
           A   +GS      + D+R++   + +   V      +  
Sbjct: 331 AFSSQGS------IDDSRQLAAHLGIGFDVLPIHGLYEK 363


>gi|222149440|ref|YP_002550397.1| argininosuccinate synthase [Agrobacterium vitis S4]
 gi|221736423|gb|ACM37386.1| argininosuccinate synthase [Agrobacterium vitis S4]
          Length = 409

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+SVV   L+   G ++I  T                  G+++  AR+ 
Sbjct: 6   KKLVLAYSGGLDTSVVLKWLQETYGCEIITFT-------------ADLGQGEELEPARQN 52

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
              + +      D  E F    + P   + A  E          R +    L+S+ + +G
Sbjct: 53  AQRLGIEDIRIDDLREEFVRDFVFPMMRANALYEGQYLLGSSIARPLIAKHLISIAQDVG 112

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 113 ADAIAHG 119


>gi|159905464|ref|YP_001549126.1| ExsB family protein [Methanococcus maripaludis C6]
 gi|159886957|gb|ABX01894.1| ExsB family protein [Methanococcus maripaludis C6]
          Length = 261

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 23/169 (13%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L S  L +N K  + VVA SGGVDS   A+++            +++     + R     
Sbjct: 52  LKSDTLTQNLKKEKAVVAFSGGVDS--TASIIVGK---------KIFEICAVTVRSKYIM 100

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +   +   +   +NVSH   D         + P      +G+   PC  C+ TV+   
Sbjct: 101 DAETEENVSELVRRLNVSHEFIDVN-------LDPIFEDTKSGKY-HPCGRCHSTVETEI 152

Query: 129 LLSVTRQLGADVLATGHYIRSRLYV---GDDGKRRRIMCRPMDLERDQS 174
           L +   + G + +  G  +          D G  R  +   + + +D+S
Sbjct: 153 L-NYAEKNGINYIIYGDMLSIGHLSIKKTDKGLIRLNILSFLSMAKDES 200


>gi|126459407|ref|YP_001055685.1| NAD synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|126249128|gb|ABO08219.1| NH(3)-dependent NAD(+) synthetase [Pyrobaculum calidifontis JCM
           11548]
          Length = 276

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 61/210 (29%), Gaps = 68/210 (32%)

Query: 23  VVVAMSGGVDS------------SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           VVV +SGG+DS            S            V+G+ +                  
Sbjct: 45  VVVGLSGGIDSTVAAALAVKALGS----------ERVLGLIM-----------PSVFTPV 83

Query: 71  QDVYDARRVCDTINVSHYVFD---YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           +DV DA  V + + +     D     E F+ ++        A+G            ++ +
Sbjct: 84  EDVRDAEEVAERLGIRMRKVDITPIVESFKRSIPDYVEDRLASGNLL-------PRIRMT 136

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L     +    VL TG               R  +      +    Y            
Sbjct: 137 ILYYYANRDNLLVLGTG--------------DRSELLLGYFTK----YGDGGVD------ 172

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDS 217
              P+G + K  VR++AR +G        S
Sbjct: 173 -LLPIGGLYKLQVREMARRLGFSKIAAKPS 201


>gi|119964149|ref|YP_947403.1| argininosuccinate synthase [Arthrobacter aurescens TC1]
 gi|166219943|sp|A1R591|ASSY_ARTAT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119951008|gb|ABM09919.1| argininosuccinate synthase [Arthrobacter aurescens TC1]
          Length = 401

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 64/202 (31%), Gaps = 43/202 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    +    G +VI V             +G          A    
Sbjct: 4   RIVLAYSGGLDTSVAIGWIGEATGAEVIAV--------AVDVGQGGESLETIRQRA---- 51

Query: 81  DTIN---VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             +    V  YV D  + F N   +P   + A  +   P V   +R V    L+   R+ 
Sbjct: 52  --LGCGAVEAYVADARDEFANEYAMPTLKANALYQGHYPLVSAISRPVIVKHLVKAAREF 109

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD- 194
           GA  +A G                   C       DQ  F               P+ D 
Sbjct: 110 GATTVAHG-------------------CTGK--GNDQVRFEVGIQTLGPDLKCIAPVRDL 148

Query: 195 -MKKESVRDLAREMGLDIADKS 215
            + ++     A E GL I    
Sbjct: 149 ALTRDKAIAFAEEKGLPIETTK 170


>gi|226289087|gb|EEH44599.1| argininosuccinate synthase [Paracoccidioides brasiliensis Pb18]
          Length = 413

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKEKVCLAYSGGLDTSCILAWLIEQGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R    I      V D +  F   +        A  E     +   R V    ++   ++ 
Sbjct: 49  RKALLIGAQKLVVADLKREFVEDLCYRAIQCNAIWEDRY--LLGARPVIARAMMRCAKEE 106

Query: 137 GADVLATG 144
           G   ++ G
Sbjct: 107 GCVAVSHG 114


>gi|295660644|ref|XP_002790878.1| argininosuccinate synthase [Paracoccidioides brasiliensis Pb01]
 gi|226281130|gb|EEH36696.1| argininosuccinate synthase [Paracoccidioides brasiliensis Pb01]
          Length = 413

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKEKVCLAYSGGLDTSCILAWLIEQGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R    I      V D +  F   +        A  E     +   R V    ++   ++ 
Sbjct: 49  RKALLIGAQKLVVADLKREFVEDLCYRAIQCNAIWEDRY--LLGARPVIARAMMRCAKEE 106

Query: 137 GADVLATG 144
           G   ++ G
Sbjct: 107 GCVAVSHG 114


>gi|67923165|ref|ZP_00516654.1| Conserved hypothetical protein 268 [Crocosphaera watsonii WH 8501]
 gi|67855007|gb|EAM50277.1| Conserved hypothetical protein 268 [Crocosphaera watsonii WH 8501]
          Length = 276

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 51/218 (23%)

Query: 1   MVVSEATRLNSLDLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           M+  + T+L ++      K M R ++A SGG+DS++VA +     YDV+G      +   
Sbjct: 1   MLTDKLTQLQTIF-----KQMERALIAYSGGIDSTLVAKVA----YDVLG------DRAL 45

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                      +++ DA+    TI +SH + +  E                      C  
Sbjct: 46  GVTAVSPSLLPEELEDAKIQAATIGISHELVNTHEMDNPNYTSNPV---------NRCYF 96

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           C   +    L  +  + G   +  G      L   D    R  +    +           
Sbjct: 97  CKSEL-HDTLKPLALKRGYPYVVDG------LNADDLQDYRPGIQAAKERG--------- 140

Query: 180 TTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKS 215
                    R PL +  + K  VR L++ +GL   DK 
Sbjct: 141 --------ARSPLVEVGITKLEVRQLSQGLGLPWWDKP 170


>gi|320531457|ref|ZP_08032418.1| GMP synthase protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136337|gb|EFW28324.1| GMP synthase protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 528

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 70/204 (34%), Gaps = 43/204 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D  V+  +SGGVDSSV AAL+ R     IG  +T    +       +             
Sbjct: 223 DAHVICGLSGGVDSSVAAALVHRA----IGDQLTCIFVDHGLLRAGEREQVEHDY----- 273

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTR 134
              + + +     D  ERF +A          AG T  P  +  R +   +        +
Sbjct: 274 --AEGMGIRVITVDETERFLSA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQ 319

Query: 135 QLGADVL-ATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +   + + A G  IR  +        V   G       +           +    +    
Sbjct: 320 RRVIEAVGAEGGEIRFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLDF 372

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  PL ++ K+ VR + RE+G+ 
Sbjct: 373 ELIEPLRELFKDEVRAIGRELGVP 396


>gi|307701980|ref|ZP_07638988.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis NCTC
           12261]
 gi|307616625|gb|EFN95814.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis NCTC
           12261]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGNQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|257792080|ref|YP_003182686.1| argininosuccinate synthase [Eggerthella lenta DSM 2243]
 gi|325831706|ref|ZP_08164923.1| argininosuccinate synthase [Eggerthella sp. HGA1]
 gi|257475977|gb|ACV56297.1| argininosuccinate synthase [Eggerthella lenta DSM 2243]
 gi|325486577|gb|EGC89026.1| argininosuccinate synthase [Eggerthella sp. HGA1]
          Length = 464

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V+A SGG+D+SV    L+ +   DVI V           + +G       +   ++
Sbjct: 12  KDKAVLAYSGGLDTSVCIKWLQEEKNLDVIAVV-----GDVGQEHEG-------LEKIKQ 59

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  + F    +    ++ A  E   P V   +R +    L+    + 
Sbjct: 60  KALKTGAVECLVVDMRDVFAQDFLSKALAANALYENKYPLVSALSRPLISKHLVDAAHKF 119

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 120 GAKYIAHG 127


>gi|220905069|ref|YP_002480381.1| GMP synthase, large subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869368|gb|ACL49703.1| GMP synthase, large subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 511

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 64/201 (31%), Gaps = 30/201 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D  VV A+SGG+DS+VVA LL R     IG  L          R G       
Sbjct: 207 EMAEQVGDKHVVCALSGGIDSTVVAVLLHRA----IGKRLHCIFVDNGLLRLGEGDEVVS 262

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLL 130
                            FD    F  A    F S     E P     +  +  +      
Sbjct: 263 YLR------------EHFDLNLNFVQA-QERFLSKLKGVEDPEKKRKIIGHTFI--EIFD 307

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +L   D LA G  +   +      K    + +           +          L 
Sbjct: 308 EEANKLDQVDFLAQG-TLYPDVIESISHKGPSAVIKSHHN-------VGGLPDTMKLKLI 359

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +A E+G+ 
Sbjct: 360 EPLRELFKDEVRKVAAELGMP 380


>gi|29374817|ref|NP_813969.1| GMP synthase [Enterococcus faecalis V583]
 gi|227519958|ref|ZP_03950007.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX0104]
 gi|227555820|ref|ZP_03985867.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis HH22]
 gi|229547002|ref|ZP_04435727.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX1322]
 gi|255971671|ref|ZP_05422257.1| GMP synthase [Enterococcus faecalis T1]
 gi|255974676|ref|ZP_05425262.1| GMP synthase [Enterococcus faecalis T2]
 gi|256618415|ref|ZP_05475261.1| GMP synthase [Enterococcus faecalis ATCC 4200]
 gi|256761969|ref|ZP_05502549.1| GMP synthase [Enterococcus faecalis T3]
 gi|256956895|ref|ZP_05561066.1| GMP synthase [Enterococcus faecalis DS5]
 gi|256964099|ref|ZP_05568270.1| GMP synthase [Enterococcus faecalis HIP11704]
 gi|257078566|ref|ZP_05572927.1| GMP synthase [Enterococcus faecalis JH1]
 gi|257081462|ref|ZP_05575823.1| GMP synthase [Enterococcus faecalis E1Sol]
 gi|257084112|ref|ZP_05578473.1| GMP synthase [Enterococcus faecalis Fly1]
 gi|257087939|ref|ZP_05582300.1| GMP synthase [Enterococcus faecalis D6]
 gi|257088617|ref|ZP_05582978.1| GMP synthase [Enterococcus faecalis CH188]
 gi|257417542|ref|ZP_05594536.1| GMP synthase [Enterococcus faecalis AR01/DG]
 gi|257418732|ref|ZP_05595726.1| GMP synthase [Enterococcus faecalis T11]
 gi|294781523|ref|ZP_06746861.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|307269051|ref|ZP_07550413.1| GMP synthase protein [Enterococcus faecalis TX4248]
 gi|307274136|ref|ZP_07555344.1| GMP synthase protein [Enterococcus faecalis TX0855]
 gi|307276360|ref|ZP_07557485.1| GMP synthase protein [Enterococcus faecalis TX2134]
 gi|307278570|ref|ZP_07559641.1| GMP synthase protein [Enterococcus faecalis TX0860]
 gi|307287053|ref|ZP_07567126.1| GMP synthase protein [Enterococcus faecalis TX0109]
 gi|312901158|ref|ZP_07760445.1| GMP synthase protein [Enterococcus faecalis TX0470]
 gi|312903895|ref|ZP_07763066.1| GMP synthase protein [Enterococcus faecalis TX0635]
 gi|312952567|ref|ZP_07771432.1| GMP synthase protein [Enterococcus faecalis TX0102]
 gi|44887950|sp|Q839J8|GUAA_ENTFA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29342275|gb|AAO80041.1| GMP synthase [Enterococcus faecalis V583]
 gi|227072506|gb|EEI10469.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX0104]
 gi|227174987|gb|EEI55959.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis HH22]
 gi|229307930|gb|EEN73917.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX1322]
 gi|237512927|gb|AAL27449.2| GuaA [Enterococcus faecalis]
 gi|255962689|gb|EET95165.1| GMP synthase [Enterococcus faecalis T1]
 gi|255967548|gb|EET98170.1| GMP synthase [Enterococcus faecalis T2]
 gi|256597942|gb|EEU17118.1| GMP synthase [Enterococcus faecalis ATCC 4200]
 gi|256683220|gb|EEU22915.1| GMP synthase [Enterococcus faecalis T3]
 gi|256947391|gb|EEU64023.1| GMP synthase [Enterococcus faecalis DS5]
 gi|256954595|gb|EEU71227.1| GMP synthase [Enterococcus faecalis HIP11704]
 gi|256986596|gb|EEU73898.1| GMP synthase [Enterococcus faecalis JH1]
 gi|256989492|gb|EEU76794.1| GMP synthase [Enterococcus faecalis E1Sol]
 gi|256992142|gb|EEU79444.1| GMP synthase [Enterococcus faecalis Fly1]
 gi|256995969|gb|EEU83271.1| GMP synthase [Enterococcus faecalis D6]
 gi|256997429|gb|EEU83949.1| GMP synthase [Enterococcus faecalis CH188]
 gi|257159370|gb|EEU89330.1| GMP synthase [Enterococcus faecalis ARO1/DG]
 gi|257160560|gb|EEU90520.1| GMP synthase [Enterococcus faecalis T11]
 gi|294451380|gb|EFG19844.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|306501832|gb|EFM71122.1| GMP synthase protein [Enterococcus faecalis TX0109]
 gi|306504736|gb|EFM73935.1| GMP synthase protein [Enterococcus faecalis TX0860]
 gi|306506965|gb|EFM76110.1| GMP synthase protein [Enterococcus faecalis TX2134]
 gi|306509098|gb|EFM78160.1| GMP synthase protein [Enterococcus faecalis TX0855]
 gi|306514621|gb|EFM83174.1| GMP synthase protein [Enterococcus faecalis TX4248]
 gi|310629468|gb|EFQ12751.1| GMP synthase protein [Enterococcus faecalis TX0102]
 gi|310632729|gb|EFQ16012.1| GMP synthase protein [Enterococcus faecalis TX0635]
 gi|311291747|gb|EFQ70303.1| GMP synthase protein [Enterococcus faecalis TX0470]
 gi|315026770|gb|EFT38702.1| GMP synthase protein [Enterococcus faecalis TX2137]
 gi|315031190|gb|EFT43122.1| GMP synthase protein [Enterococcus faecalis TX0017]
 gi|315035975|gb|EFT47907.1| GMP synthase protein [Enterococcus faecalis TX0027]
 gi|315143272|gb|EFT87288.1| GMP synthase protein [Enterococcus faecalis TX2141]
 gi|315147095|gb|EFT91111.1| GMP synthase protein [Enterococcus faecalis TX4244]
 gi|315151188|gb|EFT95204.1| GMP synthase protein [Enterococcus faecalis TX0012]
 gi|315153422|gb|EFT97438.1| GMP synthase protein [Enterococcus faecalis TX0031]
 gi|315156291|gb|EFU00308.1| GMP synthase protein [Enterococcus faecalis TX0043]
 gi|315158571|gb|EFU02588.1| GMP synthase protein [Enterococcus faecalis TX0312]
 gi|315160860|gb|EFU04877.1| GMP synthase protein [Enterococcus faecalis TX0645]
 gi|315165827|gb|EFU09844.1| GMP synthase protein [Enterococcus faecalis TX1302]
 gi|315168180|gb|EFU12197.1| GMP synthase protein [Enterococcus faecalis TX1341]
 gi|315172592|gb|EFU16609.1| GMP synthase protein [Enterococcus faecalis TX1346]
 gi|315573619|gb|EFU85810.1| GMP synthase protein [Enterococcus faecalis TX0309B]
 gi|315579392|gb|EFU91583.1| GMP synthase protein [Enterococcus faecalis TX0630]
 gi|315582033|gb|EFU94224.1| GMP synthase protein [Enterococcus faecalis TX0309A]
 gi|323479384|gb|ADX78823.1| Glutamineamidotransferase [Enterococcus faecalis 62]
 gi|327533968|gb|AEA92802.1| GMP synthase (glutamine-hydrolyzing) [Enterococcus faecalis OG1RF]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|255008100|ref|ZP_05280226.1| putative cell-cycle protein [Bacteroides fragilis 3_1_12]
 gi|313145817|ref|ZP_07808010.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12]
 gi|313134584|gb|EFR51944.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12]
          Length = 431

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+VA+SGG DS V    LL   GY         +   K S R        D    R+
Sbjct: 19  NDKVLVALSGGADS-VALLRLLLSMGYTCEATHCNFHLRDKESDR--------DEAFVRQ 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    V  +   +        I   A  + + E         R +++    ++ +Q GA
Sbjct: 70  LCHEAEVPLHTVHF------DTIQYAADKHISIE------MAARELRYEWFETLRKQRGA 117

Query: 139 DVLATGHY 146
            V+A  H+
Sbjct: 118 AVIAVAHH 125


>gi|311114462|ref|YP_003985683.1| GMP synthase (glutamine-hydrolyzing) [Gardnerella vaginalis ATCC
           14019]
 gi|310945956|gb|ADP38660.1| GMP synthase (glutamine-hydrolyzing) [Gardnerella vaginalis ATCC
           14019]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 47/203 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVKHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFS 127
               +     D E+ F            +  +I   F  ++   +               
Sbjct: 270 ---GIKLIAVDAEDDFLDALKGVSEPERKRKIIGEKFIRTFEKAQ--------------R 312

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            ++    + GA+V            V   G       +           +    +     
Sbjct: 313 QVIEEAGKSGAEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDLKFK 365

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  E+GL 
Sbjct: 366 LIEPLRTLFKDEVRAIGTELGLP 388


>gi|313897338|ref|ZP_07830881.1| PP-loop family protein [Clostridium sp. HGF2]
 gi|312957708|gb|EFR39333.1| PP-loop family protein [Clostridium sp. HGF2]
          Length = 317

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 38/138 (27%)

Query: 22  RVVVAMSGGVDSSV---VAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS V      +        ++V+G+ ++L                 D  +
Sbjct: 25  RIAVGVSGGKDSMVLLTALHMYSKFADRNFEVVGIHIKL------------GFPNMDFSE 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV----KFSD--L 129
               C    ++ Y +D      + V               P  + N       KF    +
Sbjct: 73  VVAFCRQQGITFYQYD------SQVYEILKR--------NPDKEGNIKCSLCSKFKKATV 118

Query: 130 LSVTRQLGADVLATGHYI 147
           +   ++L    +A GH+ 
Sbjct: 119 IDAAKKLNCTKVAFGHHS 136


>gi|291561231|emb|CBL40030.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SS3/4]
          Length = 412

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 49/271 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCA 69
           D +   +  ++ V +SGG DS ++A LL+          LQL+   K             
Sbjct: 165 DYELIKEGDKIAVCISGGKDSMLMAKLLQE---------LQLHGKVKFDLVFLVMNPGYN 215

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             +          + +              V      +  A     PC  C   ++   L
Sbjct: 216 EDNWNIILNNAKLLGIPI-----------NVFESDIFNIVADVDKSPCYLC-ARMRRGYL 263

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF--LFATTQQQLCD 187
            S  ++LG + +A GH+    +     G    ++       + ++    L +   + +  
Sbjct: 264 YSHAKELGCNKIALGHHFDDVIETTLMG----MLYSG----KVETMMPKLHSKNFEGME- 314

Query: 188 LRFPLGDMKKESVRDLAREMGLDI----ADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
           L  P+  +++  ++       L         ++    C  ++G   D +K + A +    
Sbjct: 315 LIRPMYMVREADIKAWRDYNHLHFIQCACRFTERCATCGGEKGSKRDEMKELIAELRKRC 374

Query: 244 DIVHLN----------GQILGRHNGIINYTI 264
           D + +N            ++G H G  +Y  
Sbjct: 375 DTIDMNIFNSVHNINLKTVIGYHKGDWSYNF 405


>gi|288870927|ref|ZP_06115784.2| GMP synthase [Clostridium hathewayi DSM 13479]
 gi|288865377|gb|EFC97675.1| GMP synthase [Clostridium hathewayi DSM 13479]
          Length = 521

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 49/202 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V+ A+SGGVDSSV A +L +  G  +  V      L+  +     +         D+  
Sbjct: 225 KVLCALSGGVDSSVAAVMLAKAVGKQLTCVFVDHGLLR-KDEGDEVEAVFGPNGPYDLN- 282

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
                          + +ERF   +           E P       R +           
Sbjct: 283 -----------FIRVNAQERFYEKL--------KGAEEPE----QKRKIIGEEFIRVFED 319

Query: 132 VTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDL 188
             +++G    A  ++++  +Y    + G  +  + +           +    +     ++
Sbjct: 320 EAKKIG----AVDYFVQGTIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKEI 368

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR    E+G+ 
Sbjct: 369 IEPLRLLFKDEVRKAGLELGIP 390


>gi|300861889|ref|ZP_07107969.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848414|gb|EFK76171.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
          Length = 520

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 268 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 322

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 323 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 373 TLFKDEVRALGTELGMP 389


>gi|126540977|emb|CAM46971.1| asparagine synthetase [Danio rerio]
          Length = 560

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+   +SGG+DSS+VAALL +    + +   +Q ++               DV  AR+V 
Sbjct: 251 RIGCLLSGGLDSSLVAALLVKLAKEEKLPYPIQTFSIGAEDSP--------DVAAARKVA 302

Query: 81  DTINVSHYVFDYEERF----RNAVIVPFASSY 108
           D I   H+V ++           VIV    SY
Sbjct: 303 DYIGSEHHVVNFTPEEGISALEDVIVH-LESY 333


>gi|46195775|ref|NP_957457.2| asparagine synthetase [Danio rerio]
 gi|45501119|gb|AAH67140.1| Asparagine synthetase [Danio rerio]
          Length = 560

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+   +SGG+DSS+VAALL +    + +   +Q ++               DV  AR+V 
Sbjct: 251 RIGCLLSGGLDSSLVAALLVKLAKEEKLPYPIQTFSIGAEDSP--------DVAAARKVA 302

Query: 81  DTINVSHYVFDYEERF----RNAVIVPFASSY 108
           D I   H+V ++           VIV    SY
Sbjct: 303 DYIGSEHHVVNFTPEEGISALEDVIVH-LESY 333


>gi|30353831|gb|AAH52127.1| Asparagine synthetase [Danio rerio]
          Length = 560

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+   +SGG+DSS+VAALL +    + +   +Q ++               DV  AR+V 
Sbjct: 251 RIGCLLSGGLDSSLVAALLVKLAKEEKLPYPIQTFSIGAEDSP--------DVAAARKVA 302

Query: 81  DTINVSHYVFDYEERF----RNAVIVPFASSY 108
           D I   H+V ++           VIV    SY
Sbjct: 303 DYIGSEHHVVNFTPEEGISALEDVIVH-LESY 333


>gi|303327985|ref|ZP_07358424.1| GMP synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302861811|gb|EFL84746.1| GMP synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 514

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D  VV A+SGG+DS+VVA LL R  G  +  + +                   
Sbjct: 210 EMAEQVGDRHVVCALSGGIDSTVVAVLLHRAIGKRLHCIFVDN--------------GLL 255

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDL 129
            + +   V + +      FD    F  A    F S     E P     +  +  +     
Sbjct: 256 RLNEGEEVVNYLR---EHFDLNLDFVQA-QELFLSRLKGVEDPEKKRKIIGHTFI--EIF 309

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++L   D LA G  +   +      K    + +           +          L
Sbjct: 310 DEEAKKLPQVDFLAQG-TLYPDVIESVSHKGPSAVIKSHHN-------VGGLPDTMKLKL 361

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +A E+G+ 
Sbjct: 362 IEPLRELFKDEVRKVAAELGMP 383


>gi|218295197|ref|ZP_03496033.1| GMP synthase, large subunit [Thermus aquaticus Y51MC23]
 gi|218244400|gb|EED10925.1| GMP synthase, large subunit [Thermus aquaticus Y51MC23]
          Length = 503

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 63/194 (32%), Gaps = 37/194 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++A+SGGVDSS +A LL R G D + V                     +  +      
Sbjct: 211 RVLLAVSGGVDSSTLALLLARAGVDHLAVF-----------VDHGLLRLGEREEVEGALR 259

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTRQLG 137
            + V+  V + +          F  +    E P       R V     +     V R+ G
Sbjct: 260 ALGVNLLVVEAK--------DHFLKALKGVEDPE----AKRQVIGRAFVEVFSQVARERG 307

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               LA G      +     G       +           +    +    +L  P   + 
Sbjct: 308 PFHFLAQGTLYPDVIESA--GGHGAAKIKSHHN-------VGGLPEDLAFELLEPFRLLF 358

Query: 197 KESVRDLAREMGLD 210
           K+ VR+LA  +GL 
Sbjct: 359 KDEVRELALLLGLP 372


>gi|13626768|sp|O26806|GUAAB_METTH RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
          Length = 308

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 44/196 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + ++A+SGGVDSSV + L  R     IG      ++  A           +    R+ 
Sbjct: 21  NEKAIIALSGGVDSSVASVLAGRA----IG------DNLTAVFVDHGLLREGEAEYVRKT 70

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
             + +N  +   D  E F              G T     +  R +     +     V  
Sbjct: 71  FSERLNFRY--IDASEEFLKE---------LEGVT---DPEEKRKIIGRVFIEVFERVAE 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++GA  L  G      +      K    +                     + ++  P+ +
Sbjct: 117 EIGARYLVQGTIAPDWIESEGQIKSHHNVA---------------LPHGLVLEIVEPIRE 161

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+GL 
Sbjct: 162 LYKDEVREIGLELGLP 177


>gi|289450432|ref|YP_003475365.1| GMP synthase family protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184979|gb|ADC91404.1| GMP synthase (glutamine-hydrolyzing) family protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 330

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 34/193 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G +++ V          +         + V +  R
Sbjct: 39  DNKVLLALSGGVDSSVVAALLIKAIGRNLVAVH--------VNHGLLRQGEPEQVIEVFR 90

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             + +  +    D  +RF + +                 +  +  +         R+L  
Sbjct: 91  --NQMQANLIYVDATDRFLDKLAGVADPETKRK------IIGSEFI--DVFAEEARKLSD 140

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G        + +  +  +       L  D          + +     P+  + K
Sbjct: 141 IRFLAQG---TIWPDILESEEGIKSHHNAGGLPSD-------LKFELVE----PVRILFK 186

Query: 198 ESVRDLAREMGLD 210
           + VR + + +GL 
Sbjct: 187 DEVRVVGKALGLP 199


>gi|187478068|ref|YP_786092.1| GMP synthase [Bordetella avium 197N]
 gi|123515157|sp|Q2L1U0|GUAA_BORA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115422654|emb|CAJ49180.1| GMP synthase [glutamine-hydrolyzing] [Bordetella avium 197N]
          Length = 530

 Score = 52.9 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V++ +SGGVDSSV AAL+ R  G  +  V              G     + +   + 
Sbjct: 225 NDEVILGLSGGVDSSVAAALIHRAIGDQLTCVF----------VDHGLLRLNEGLQVMQT 274

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             + + V     D  E+F      V  P A     G   +                  + 
Sbjct: 275 FSENMGVKIIHVDATEQFMGKLAGVADPEAKRKIIGREFVEVFQT----------EAGKL 324

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  LA G      +        +    +           +    +     L  PL ++
Sbjct: 325 QGAKWLAQGTIYPDVIESAGAKTGKAAAIKSHHN-------VGGLPETLNLQLLEPLREL 377

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L   +GL 
Sbjct: 378 FKDEVRELGVALGLP 392


>gi|312865121|ref|ZP_07725349.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus downei F0415]
 gi|311099232|gb|EFQ57448.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus downei F0415]
          Length = 517

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +  + + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 205 MDNFIEMEIVKIRQTVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  ERF   +                 V  
Sbjct: 261 RKNEGDQVMN-------MLGGNFGLNIIRVDASERFLKLLAGVDDPEKKRKIIGNEFVYV 313

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 314 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 356

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +     L  PL  + K+ VR L   +G+ 
Sbjct: 357 PEDMQFQLIEPLDTLFKDEVRALGTALGMP 386


>gi|309799578|ref|ZP_07693805.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus infantis
           SK1302]
 gi|308116798|gb|EFO54247.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus infantis
           SK1302]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 207 TMDNFIEMQIKQIREKVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHG 261

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG      D+     +     ++    D  +RF + +                 V  
Sbjct: 262 LLRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 317 -----FDD--EASKLTDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 360 PEDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|154496654|ref|ZP_02035350.1| hypothetical protein BACCAP_00946 [Bacteroides capillosus ATCC
          29799]
 gi|150273906|gb|EDN01006.1| hypothetical protein BACCAP_00946 [Bacteroides capillosus ATCC
          29799]
          Length = 168

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
          D+     D +V++A+SGGVDSSVVAALL +  G  ++ V 
Sbjct: 29 DIQAQVGDKKVLLALSGGVDSSVVAALLIKAIGKQLVCVH 68


>gi|253996330|ref|YP_003048394.1| GMP synthase large subunit [Methylotenera mobilis JLW8]
 gi|253983009|gb|ACT47867.1| GMP synthase, large subunit [Methylotenera mobilis JLW8]
          Length = 535

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGDLVMDMF-------AG 275

Query: 82  TINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
            ++V+    D   +F    N V  P A     G   +          F    +  +    
Sbjct: 276 RLHVNVIRVDATNQFMGHLNGVSDPEAKRKIIGREFVEV--------FKTEAAKLKAGTG 327

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL 192
              GA  LA G      +  G    ++ +  +           +     +QL   L  PL
Sbjct: 328 GHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPL 379

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 380 RDLFKDEVRELGVALGLP 397


>gi|256810712|ref|YP_003128081.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocaldococcus fervens AG86]
 gi|256793912|gb|ACV24581.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocaldococcus fervens AG86]
          Length = 373

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 47/197 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              RV+  +S G+DS V A ++ R G  DV+ + L++                  +  AR
Sbjct: 179 SQGRVLCLVSDGIDSPVAAFMMIRRGCRDVL-LHLKMSEEG--------------LNKAR 223

Query: 78  RVCDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLS 131
           R+ + +      +   V+DY    ++ V      S         C+ C R + K ++   
Sbjct: 224 RIAEVLSDYDTELEFVVYDYTNDIKDIVEK--LKSIKKEN--YTCIFCKRRMLKVAE--K 277

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + L  D + TG  +                       ++            L     P
Sbjct: 278 YAKYLDCDAIVTGDNLGQV---------------ASQTLKNLRVISEGINYPILR----P 318

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K  + ++A+E+G
Sbjct: 319 LIGLDKNDIVEIAKEIG 335


>gi|239907746|ref|YP_002954487.1| probable glutamine-dependent NAD(+) synthetase [Desulfovibrio
           magneticus RS-1]
 gi|239797612|dbj|BAH76601.1| probable glutamine-dependent NAD(+) synthetase [Desulfovibrio
           magneticus RS-1]
          Length = 583

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 17/79 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARR 78
           V + +SGG+DSS+ A +     G + V+GV +  +  +                + DA+ 
Sbjct: 319 VALGLSGGIDSSLTAIIAADALGPENVLGVAMPTRFSSDDS-------------LEDAQA 365

Query: 79  VCDTINVSHYVFDYEERFR 97
           + + + +       E  F+
Sbjct: 366 LAERLGIELKTVVIEPIFQ 384


>gi|269925445|ref|YP_003322068.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789105|gb|ACZ41246.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
          Length = 403

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+ A +K + G +VI  T                  G++V +A+
Sbjct: 3   KIKKVVLAYSGGLDTSVILAWIKENYGAEVIAFT-------------ADVGQGEEVEEAK 49

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSVTRQ 135
           +          Y  D  E F    + P   + A  E          R +   +L+ + R+
Sbjct: 50  QKALATGASKAYALDLREEFVRDFVFPVIRAAAVYENQYLMGTSIARPLIARELVRIARE 109

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 110 EGADAIAHG 118


>gi|210620722|ref|ZP_03292208.1| hypothetical protein CLOHIR_00151 [Clostridium hiranonis DSM 13275]
 gi|210155223|gb|EEA86229.1| hypothetical protein CLOHIR_00151 [Clostridium hiranonis DSM 13275]
          Length = 281

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 23/128 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---LYNSRKASKRKGSCCAGQDVYDARR 78
           R+ VA+SGG DS ++A + +          L+     +                      
Sbjct: 46  RIAVAISGGKDSLLMAKMFQE---------LKKYSNIDFELVFLAMDPGYRDDIRVKLEE 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C  +N+   +      F + +               PC  C   ++   L +   +LG 
Sbjct: 97  LCKYLNIPVEI------FESGIFRITDEIAR----DNPCYMC-ARMRRGALYNKAEELGC 145

Query: 139 DVLATGHY 146
           + LA GH+
Sbjct: 146 NKLALGHH 153


>gi|154174066|ref|YP_001407913.1| ExsB protein [Campylobacter curvus 525.92]
 gi|189038901|sp|A7GXH1|QUEC_CAMC5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|112803412|gb|EAU00756.1| ExsB protein [Campylobacter curvus 525.92]
          Length = 223

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 34/226 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V  MSGG+DS++ A + KR+GY++I +             +      + +    ++C
Sbjct: 2   KKAVCIMSGGMDSTLCAVMAKREGYEIIALHF---------DYEQRTMRREKMA-FEQIC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAG--------ETPLPCVDCNRTVKFSDLLSV 132
           D + +     + +  F   +     +             E P   V     +  S   ++
Sbjct: 52  DYLGIK-KRLNLDVSFIADIGGNALTDKNLAVSKSGLGDEIPNTYVPFRNGIFISIAAAL 110

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             + GA  +  G        V +D       C+   +ER  +     T  +    +  PL
Sbjct: 111 AEKEGAQAIYIG-------VVEEDSSGYPD-CKGEFIERMNAAINVGTAPETKIKIVTPL 162

Query: 193 GDMKKESVRDLAREMGLDI-------ADKSDSQDICFVQQGKYFDV 231
            ++ K  +   + E G  +         + ++  +C   + +    
Sbjct: 163 VNLSKADIVAKSLEFGSPLELTWSCYEREDEACGLCDSCRLRLRGF 208


>gi|325285141|ref|YP_004260931.1| GMP synthase (glutamine-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324320595|gb|ADY28060.1| GMP synthase (glutamine-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 511

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           L +   D +VV+ +SGGVDSSV A LL + 
Sbjct: 208 LQQKIGDDKVVLGLSGGVDSSVAAMLLHKA 237


>gi|291561227|emb|CBL40026.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [butyrate-producing
           bacterium SS3/4]
          Length = 541

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 41/204 (20%)

Query: 23  VVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V+ A+SGG DS V   LL        G  V    +  +  R A          +D     
Sbjct: 36  VLAAVSGGADS-VCLLLLLHEMAAELGIKVFAFHM-NHGIRGAEAD-------RDERFVM 86

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C+ +N+   V          V    A    +GE      +  R +++  L     +  
Sbjct: 87  ELCERLNIPLTVA------HEKVEEYAAERGLSGE------EAGRILRYHHLGETAEKYQ 134

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT--QQQLCDLRFPLGDM 195
              +A  H         D       + R           L   +  +    ++  PL  +
Sbjct: 135 CAKIAVAH-----HEDDDAETVLLNLFRGSG--------LAGLSGIRPVRENIIRPLLCV 181

Query: 196 KKESVRDLAREMGLDIADKSDSQD 219
            ++ + +   E  L   + S +++
Sbjct: 182 SRKEIEEYLNEQELSWCEDSTNKE 205


>gi|270006656|gb|EFA03104.1| hypothetical protein TcasGA2_TC013014 [Tribolium castaneum]
          Length = 795

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
           + R+   +SGG+DSS++A+LL R   +V              K +  C    D  D   A
Sbjct: 225 NRRIGCFLSGGLDSSLIASLLVRAAKEV----------DLPYKIQTFCIGMGDSPDVIAA 274

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
           + V D I   H+V  + E     V+     +    ETP
Sbjct: 275 KEVADFIGTEHHVITFSEEDVARVLDDVIYTL---ETP 309


>gi|242310240|ref|ZP_04809395.1| argininosuccinate synthase [Helicobacter pullorum MIT 98-5489]
 gi|239523537|gb|EEQ63403.1| argininosuccinate synthase [Helicobacter pullorum MIT 98-5489]
          Length = 407

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 31/142 (21%)

Query: 15  DKNPKD-MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            +N K+  +VV+A SGG+D+SV+   L    G +V+  T                  G++
Sbjct: 3   QENAKNIKKVVLAYSGGLDTSVILKWLGDTYGCEVVTFT-------------ADIGQGEE 49

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNR 122
           V  AR     + +     ++ D  E F    + P           Y  G +    +   R
Sbjct: 50  VEPAREKALKLGIKPQNIFIEDLREEFIRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR 109

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
                 L+ + +++GAD +A G
Sbjct: 110 ------LVEIAKEVGADAIAHG 125


>gi|189237981|ref|XP_001812412.1| PREDICTED: similar to asparagine synthetase [Tribolium castaneum]
          Length = 538

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
           + R+   +SGG+DSS++A+LL R   +V              K +  C    D  D   A
Sbjct: 225 NRRIGCFLSGGLDSSLIASLLVRAAKEV----------DLPYKIQTFCIGMGDSPDVIAA 274

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
           + V D I   H+V  + E     V+     +    ETP
Sbjct: 275 KEVADFIGTEHHVITFSEEDVARVLDDVIYTL---ETP 309


>gi|18309972|ref|NP_561906.1| hypothetical protein CPE0990 [Clostridium perfringens str. 13]
 gi|110801239|ref|YP_695693.1| ExsB family protein [Clostridium perfringens ATCC 13124]
 gi|110801904|ref|YP_698381.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|168208060|ref|ZP_02634065.1| ExsB family protein [Clostridium perfringens E str. JGS1987]
 gi|168211804|ref|ZP_02637429.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626]
 gi|169341156|ref|ZP_02863249.1| ExsB family protein [Clostridium perfringens C str. JGS1495]
 gi|18144650|dbj|BAB80696.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675886|gb|ABG84873.1| ExsB family protein [Clostridium perfringens ATCC 13124]
 gi|110682405|gb|ABG85775.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|169299763|gb|EDS81815.1| ExsB family protein [Clostridium perfringens C str. JGS1495]
 gi|170660645|gb|EDT13328.1| ExsB family protein [Clostridium perfringens E str. JGS1987]
 gi|170710238|gb|EDT22420.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626]
          Length = 244

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 44/203 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS  +  +LK       + +++I +TL                 G D   
Sbjct: 26  KIAVGLSGGKDSLTLLHILKNYQRFSPEKFELIAITL--------------NPGGVDNSP 71

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +C  I+V  Y    +   +  V           +   PC  C   ++   L     +
Sbjct: 72  LHELCKNIDVPFYEI--QTDIKEIVFD-------IKKEKNPCSLC-ANLRRGALNDNAEK 121

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD---QSYFLFATTQQQLCDLRFPL 192
           LG + +A GH+        DD     ++    +   +      F+       +  + F  
Sbjct: 122 LGCNKVALGHH-------KDDALETLMLSISYEGRINCFSPKSFMHKNNLTLIRPMVF-- 172

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
             +++  +R    E    +    
Sbjct: 173 --IEESQIRKAVAEYNFPVIKNP 193


>gi|225026615|ref|ZP_03715807.1| hypothetical protein EUBHAL_00866 [Eubacterium hallii DSM 3353]
 gi|224956065|gb|EEG37274.1| hypothetical protein EUBHAL_00866 [Eubacterium hallii DSM 3353]
          Length = 274

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 81/240 (33%), Gaps = 56/240 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77
           V VA  GGVDS+    LLK      G   I VT +            SC   + ++ +A+
Sbjct: 23  VAVAFFGGVDST---FLLKVAHDTLGEKCIAVTAK------------SCSFPERELKEAK 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C+   + H V + EE      I  F            C  C + + F  +  + ++  
Sbjct: 68  AFCEKEGIRHLVVESEELD----IEGF-----RHNPKNRCYLCKKEL-FEKIWKIAKEEH 117

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +A G          D+G  R  +             +     +           + K
Sbjct: 118 VVAIAEG------SNFDDNGDYRPGLQ-----------AVAELGIKSPLRA----SKLNK 156

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             +R L++++GL   +K      C   +  Y + +      +  + + + L+   +G H 
Sbjct: 157 ADIRVLSKDLGLPTWNKQSF--ACLSSRFVYGETISEEKLIMVDKAEQLLLD---MGFHQ 211


>gi|166030998|ref|ZP_02233827.1| hypothetical protein DORFOR_00679 [Dorea formicigenerans ATCC
           27755]
 gi|166029265|gb|EDR48022.1| hypothetical protein DORFOR_00679 [Dorea formicigenerans ATCC
           27755]
          Length = 390

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 30/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS ++A L +         ++++ + +                   +   
Sbjct: 144 KIAVCISGGKDSMLMAKLFQELRKHGKANFELVFLVM------------NPGYNADNWKI 191

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +     + +   V      F + +    A          PC  C   ++   L S  ++
Sbjct: 192 IQDNAKVLGIPLTV------FESNIFDTVAD-----IDKNPCYLC-ARMRRGYLYSHAKE 239

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 240 LGCNKIALGHH 250


>gi|118474467|ref|YP_892648.1| PP-loop family protein [Campylobacter fetus subsp. fetus 82-40]
 gi|261886379|ref|ZP_06010418.1| PP-loop family protein [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|118413693|gb|ABK82113.1| PP-loop family protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 250

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76
           K+ ++++ +SGG DS  +A +LK           Q     K        S   G+D    
Sbjct: 24  KNDKILLGLSGGKDSLALAHILK---------HFQNVTPDKFEFEAVTLSYGMGEDYAYL 74

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              C+   + H V D        +            +   C   +R ++   L +   + 
Sbjct: 75  TAHCEKHGIKHSVIDSS------IFEISKDKIRKNSSF--CSFFSR-MRRGYLYTYALEH 125

Query: 137 GADVLATGHYI 147
           G + LA  H++
Sbjct: 126 GFNKLAIAHHL 136


>gi|108805552|ref|YP_645489.1| NH(3)-dependent NAD(+) synthetase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766795|gb|ABG05677.1| NH(3)-dependent NAD(+) synthetase [Rubrobacter xylanophilus DSM
           9941]
          Length = 577

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 25/185 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R V+ +SGG+DSS+ AA+  R  G + V GV +                +     DAR V
Sbjct: 314 RAVLGLSGGIDSSLTAAVAARALGPENVTGVLM-----------PSRYTSEASNADARAV 362

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLG 137
              + +   V      F         +    G  P    + N    ++ + +++++ + G
Sbjct: 363 AKNLGIDVRVIPIGRAF--DAYREMLAEVFRGL-PEDVTEENIQARIRGNIVMALSNKFG 419

Query: 138 ADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              L+TG+     +      GD      ++    D+ +   Y +     +       P  
Sbjct: 420 WIALSTGNKSEMSVGYSTLYGDMAGGFSVLK---DVPKTLVYRVARYVNEAEGREVIPES 476

Query: 194 DMKKE 198
            + KE
Sbjct: 477 VLTKE 481


>gi|254373218|ref|ZP_04988707.1| NAD synthase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570945|gb|EDN36599.1| NAD synthase [Francisella novicida GA99-3549]
          Length = 249

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G  +  + L                  QD+ DA  + + +
Sbjct: 33  VIGLSGGIDSAVAASLAVKTGLPITALIL-----------PSDNNQHQDMQDALDLIEML 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +    S           +  N    ++   L +  +Q      
Sbjct: 82  NIEHYTISIQPAY-EAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY----- 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 136 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 176 ELGKYLDVP 184


>gi|320589915|gb|EFX02371.1| argininosuccinate synthase [Grosmannia clavigera kw1407]
          Length = 414

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+S +   L   GY+V+   L                  +D    + 
Sbjct: 2   SKGKVCLAYSGGLDTSCILKWLLEQGYEVV-CFLAN------------VGQEEDWDAVKA 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               +      + D  + F   +  P           Y  G +    V     ++     
Sbjct: 49  KSAKLGASKMIIVDLCKEFVEQLCFPAIQCNAQYEGRYLLGTSLARPVIARAQMR----- 103

Query: 131 SVTRQLGADVLATG 144
            V +Q G D ++ G
Sbjct: 104 -VAKQEGCDYVSHG 116


>gi|314969849|gb|EFT13947.1| GMP synthase protein [Propionibacterium acnes HL037PA1]
          Length = 517

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          +G T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LSGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|148269863|ref|YP_001244323.1| PP-loop domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147735407|gb|ABQ46747.1| PP-loop domain protein [Thermotoga petrophila RKU-1]
          Length = 304

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 22/134 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ ++++A+SGG DS V    +LK+ GY+V  + ++       + + G     Q++    
Sbjct: 46  RNSKILIAVSGGKDS-VSLWHMLKKLGYEVDALFIR-------AGKSGMVQKAQEI--VE 95

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +  + +N   ++ D  E F       I              P       V+   +     
Sbjct: 96  KNAELLNTKLHIVDATEYFGGLSTQEISIMLRR--------PVCSICGVVRRYLMNKFAY 147

Query: 135 QLGADVLATGHYIR 148
           + G DV+ TGH + 
Sbjct: 148 ENGYDVVVTGHNLN 161


>gi|15642970|ref|NP_228012.1| hypothetical protein TM0197 [Thermotoga maritima MSB8]
 gi|4980693|gb|AAD35289.1|AE001704_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 304

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 22/134 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ ++++A+SGG DS V    +LK+ GY+V  + ++       + + G     Q++    
Sbjct: 46  RNSKILIAVSGGKDS-VSLWHMLKKLGYEVDALFIR-------AGKSGMVQKAQEI--VE 95

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +  + +N   ++ D  E F       I              P       V+   +     
Sbjct: 96  KNAELLNTKLHIVDATEYFGGLSTQEISIMLRR--------PVCSICGVVRRYLMNKFAY 147

Query: 135 QLGADVLATGHYIR 148
           + G DV+ TGH + 
Sbjct: 148 ENGYDVVVTGHNLN 161


>gi|325068144|ref|ZP_08126817.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces oris K20]
          Length = 528

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 70/204 (34%), Gaps = 43/204 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D  V+  +SGGVDSSV AAL+ R     IG  +T    +       +             
Sbjct: 223 DAHVICGLSGGVDSSVAAALVHRA----IGDQLTCIFVDHGLLRAGEREQVEHDY----- 273

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTR 134
              + + +     D  ERF +A          AG T  P  +  R +   +        +
Sbjct: 274 --AEGMGIRVITVDETERFLSA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQ 319

Query: 135 QLGADVL-ATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           +   + + A G  IR  +        V   G       +           +    +    
Sbjct: 320 RRVIEAVGAEGGEIRFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLDF 372

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  PL ++ K+ VR + RE+G+ 
Sbjct: 373 ELIEPLRELFKDEVRAIGRELGVP 396


>gi|325970674|ref|YP_004246865.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025912|gb|ADY12671.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 517

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDS+V A L+ +  G  ++ V +     RK            +      
Sbjct: 219 DKQVLCGLSGGVDSAVAAVLIHKAIGDQLVCVFVNNGLLRKGEAEMVLKLFRDNYK---- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDLLSVTRQL 136
                 +     + EE F +          A      P        K       S  R+ 
Sbjct: 275 ------IRLQYANAEEAFLS----------ALAGVSEPEAKRKIIGKVFIDTFYSEARKA 318

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G    LA G      +             +           +    +    DL  PL ++
Sbjct: 319 GEISFLAQGTLYPDVIESKSPSGGPSATIKSHHN-------VGGLPEDLKWDLLEPLREL 371

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L RE+GL 
Sbjct: 372 FKDEVRALGRELGLP 386


>gi|294673442|ref|YP_003574058.1| PP-loop family protein [Prevotella ruminicola 23]
 gi|294471700|gb|ADE81089.1| PP-loop family protein [Prevotella ruminicola 23]
          Length = 259

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 38/232 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           D R++V +SGG DS ++  +L +        + V  + +++ N    +            
Sbjct: 34  DDRILVGLSGGKDSLLLLEMLAKRSRIQHPRFTVEALHVRMANIHYETDTS--------- 84

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVP----FASSYAAGETPLPCVDCNRTVKFSDL 129
              ++ CD + V  +V      F            A+     +TP      NR      +
Sbjct: 85  -YLQQFCDNLGVKLHV--LTTSFEVDATADSEPTDAARRRKQKTPCFLCSWNRR---KQM 138

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            ++ ++LG + +A GH+        DD     +M        D    L    +  L  + 
Sbjct: 139 FNLAQELGCNKIALGHH-------QDDLLHTALMNLTFQGRFDTMPALLRMRKMPLA-II 190

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
            PL  ++++ ++  A   G         Q +C  +   +   +K I   I  
Sbjct: 191 RPLCMIEEKDIKQYAELQG-----YQKQQKLCPYETHSHRADIKHIYDAIEQ 237


>gi|195953020|ref|YP_002121310.1| GMP synthase, large subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932632|gb|ACG57332.1| GMP synthase, large subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 507

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 37/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V+ A+SGGVDS+V A L  +     IG  +T    +     K +             
Sbjct: 213 NKKVICAISGGVDSAVAAVLTHKA----IGDKLTCIFVDHGLLRKNESKEVISNLT---- 264

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQ 135
                + ++    D    F               E P     +  N  +         ++
Sbjct: 265 ----KLGLNIVALDRSNLF--------LEKLKNVEDPEQKRKIIGNTFI--EIFEEEAKK 310

Query: 136 LGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             A+ L  G  Y       G  G  +    +           +    ++    L  PL +
Sbjct: 311 YNAEFLLQGTLYPDLVESAGIHGSAK---IKSHHN-------VGGLPEKMNLKLLEPLRE 360

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L  E+ L 
Sbjct: 361 LFKDEVRALGLELDLP 376


>gi|84685759|ref|ZP_01013655.1| argininosuccinate synthase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665852|gb|EAQ12326.1| argininosuccinate synthase [Rhodobacterales bacterium HTCC2654]
          Length = 408

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 61/215 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARE 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
               + +     Y+ D  E F    + P           Y  G +    +   R      
Sbjct: 51  KAIMLGIKPENIYIEDLREAFVRDYVNPMFRANTVYEGQYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQL 185
           L+ +  + GAD +A G                           DQ  F    +A      
Sbjct: 105 LVEIAEETGADAVAHG---------------------ATGKGNDQVRFELACYALNPNI- 142

Query: 186 CDLRFP--LGDMKKESVR--DLAREMGLDIADKSD 216
             +  P  L D+     R  + A +  + +A    
Sbjct: 143 -KVIAPWRLWDLT-SRTRLLEFAEQNQIPVAKDKR 175


>gi|166032156|ref|ZP_02234985.1| hypothetical protein DORFOR_01859 [Dorea formicigenerans ATCC
           27755]
 gi|166027879|gb|EDR46636.1| hypothetical protein DORFOR_01859 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV A LL R  G  +  V     +     K +G    G 
Sbjct: 209 EIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEGV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + ++R+ +           AG T  P  +  R +       
Sbjct: 266 FGPNGQ-----FDLNFIRVNAQQRYYDK---------LAGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++GA D LA G      +  G  G+          + +               
Sbjct: 309 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFK 360

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL D+ K+ VR    E+G+ 
Sbjct: 361 EIIEPLRDLFKDEVRKAGLELGIP 384


>gi|313763136|gb|EFS34500.1| GMP synthase protein [Propionibacterium acnes HL013PA1]
 gi|313816475|gb|EFS54189.1| GMP synthase protein [Propionibacterium acnes HL059PA1]
 gi|313828309|gb|EFS66023.1| GMP synthase protein [Propionibacterium acnes HL063PA2]
 gi|314914434|gb|EFS78265.1| GMP synthase protein [Propionibacterium acnes HL005PA4]
 gi|314917757|gb|EFS81588.1| GMP synthase protein [Propionibacterium acnes HL050PA1]
 gi|314919516|gb|EFS83347.1| GMP synthase protein [Propionibacterium acnes HL050PA3]
 gi|314930107|gb|EFS93938.1| GMP synthase protein [Propionibacterium acnes HL067PA1]
 gi|314957092|gb|EFT01197.1| GMP synthase protein [Propionibacterium acnes HL027PA1]
 gi|314957682|gb|EFT01785.1| GMP synthase protein [Propionibacterium acnes HL002PA1]
 gi|315097885|gb|EFT69861.1| GMP synthase protein [Propionibacterium acnes HL059PA2]
 gi|315100650|gb|EFT72626.1| GMP synthase protein [Propionibacterium acnes HL046PA1]
 gi|315109277|gb|EFT81253.1| GMP synthase protein [Propionibacterium acnes HL030PA2]
 gi|327451308|gb|EGE97962.1| GMP synthase protein [Propionibacterium acnes HL087PA3]
 gi|327451786|gb|EGE98440.1| GMP synthase protein [Propionibacterium acnes HL083PA2]
 gi|328752271|gb|EGF65887.1| GMP synthase protein [Propionibacterium acnes HL087PA1]
 gi|328755345|gb|EGF68961.1| GMP synthase protein [Propionibacterium acnes HL025PA2]
          Length = 517

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          +G T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LSGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 368 RTLFKDEVRAVGLELGLP 385


>gi|302387288|ref|YP_003823110.1| GMP synthase, large subunit [Clostridium saccharolyticum WM1]
 gi|302197916|gb|ADL05487.1| GMP synthase, large subunit [Clostridium saccharolyticum WM1]
          Length = 513

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G      +V     
Sbjct: 215 DGKVLCALSGGVDSSVAAVMLAKAVGKQLTCVF---VDHGLLRKNEGD-----EVEAVFG 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                +++    + ++RF             AG   +   +  R +             +
Sbjct: 267 PAGPYDLNFIRVNAQDRFYGK---------LAG---VEDPETKRKIIGEEFIRVFEDEAK 314

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPL 192
           ++G  D    G        V + G  +  + +           +    +     ++  PL
Sbjct: 315 KIGKVDFFVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKEIIEPL 364

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+G+ 
Sbjct: 365 RLLFKDEVRKAGLELGIP 382


>gi|317052478|ref|YP_004113594.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5]
 gi|316947562|gb|ADU67038.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5]
          Length = 442

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 33/184 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV---C 80
           VVA+SGGVDS V+  LL +   +     L+L  +   +  +      +   DAR V   C
Sbjct: 26  VVAVSGGVDSMVLLHLLAKIQPE-----LKL--NLVVAHLEHGLRGEESRADARLVIQTC 78

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + + +  Y    +E F       F     A             ++++      RQ+G D 
Sbjct: 79  ERLGIPCYARFVDEHFWQRQAGNFQDKARA-------------LRYTFF----RQVGTDF 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            +   +  +     DD   +  M    D+ R +S  L + + QQ      PL  + KE++
Sbjct: 122 FSGRAFAIATAMTQDDCLEKIFM----DILRGRS-LLGSLSHQQPD-TLRPLRTISKEAL 175

Query: 201 RDLA 204
              A
Sbjct: 176 IAYA 179


>gi|261880940|ref|ZP_06007367.1| argininosuccinate synthase [Prevotella bergensis DSM 17361]
 gi|270332327|gb|EFA43113.1| argininosuccinate synthase [Prevotella bergensis DSM 17361]
          Length = 412

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 15  DKNPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +KN +DM+  VVVA SGG+D+S     L  DG+DV                     + + 
Sbjct: 8   EKNSRDMKKKVVVAFSGGLDTSYTVMKLAHDGWDVYAA-----------CANTGGFSAEQ 56

Query: 73  VYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DL 129
           +         +    +   D  + +    +              P    +  + F    +
Sbjct: 57  LKTNEENAYKLGATKYATLDVTQEYYEKSLKYMIFGNVLRNNCYPISVSSERI-FQAIAI 115

Query: 130 LSVTRQLGADVLATG 144
                ++GAD +A G
Sbjct: 116 ARYANEIGADAIAHG 130


>gi|207723384|ref|YP_002253783.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum MolK2]
 gi|206588583|emb|CAQ35546.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum MolK2]
          Length = 547

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 233 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ-MVLDMFE------G 282

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      +  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 283 RLHAKVVHANASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLT 330

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 331 NAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 383

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 384 KDEVRELGVALGLP 397


>gi|170720303|ref|YP_001747991.1| argininosuccinate synthase [Pseudomonas putida W619]
 gi|229889895|sp|B1J4I4|ASSY_PSEPW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|169758306|gb|ACA71622.1| Argininosuccinate synthase [Pseudomonas putida W619]
          Length = 405

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YDCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QAMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|254510416|ref|ZP_05122483.1| argininosuccinate synthase [Rhodobacteraceae bacterium KLH11]
 gi|221534127|gb|EEE37115.1| argininosuccinate synthase [Rhodobacteraceae bacterium KLH11]
          Length = 407

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     Y+ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKPENIYIEDIREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD +A G
Sbjct: 105 LVEIAEATGADAVAHG 120


>gi|154282387|ref|XP_001541989.1| GMP synthase subunit B [Ajellomyces capsulatus NAm1]
 gi|150410169|gb|EDN05557.1| GMP synthase subunit B [Ajellomyces capsulatus NAm1]
          Length = 543

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 33/202 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L++      IG      L ++      + +          
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMQEA----IGNRFHAVLVDNGVLRLNEAATVKET----- 284

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVKFSDLLSV 132
             +   + ++  V D  ERF              G T  P     V  N  +        
Sbjct: 285 --LTKHLGINLTVVDASERFLGK---------LKGITDDPEKKRKVIGNTFI--EVFQEE 331

Query: 133 TRQLGADVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + + A      +    +  +      D         P    +             L  L
Sbjct: 332 AKNIAAAAKGFSNEGEIKWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLEGMHL-KL 390

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR+L +++G+ 
Sbjct: 391 IEPLRELFKDEVRELGKQLGIP 412


>gi|219848571|ref|YP_002463004.1| GMP synthase [Chloroflexus aggregans DSM 9485]
 gi|219542830|gb|ACL24568.1| GMP synthase, large subunit [Chloroflexus aggregans DSM 9485]
          Length = 513

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 58/195 (29%), Gaps = 35/195 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDS+V A ++    G  +  V +     R     +      +  +      
Sbjct: 217 RVICALSGGVDSAVAALIIHHAIGDRLTCVFVDNGLLRAGEAEQVINTFREHFH------ 270

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQL 136
               V     D  E F      V+ P       GE            KF        R L
Sbjct: 271 ----VPLIAVDAREEFLAALEGVVDPEQKRKIIGE------------KFIRIFEREARSL 314

Query: 137 -GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              + LA G      +      + +    +           +          L  PL  +
Sbjct: 315 ADVEFLAQGTLYPDVIESTAPDRPKAAKIKTHHN-------VGGLPADMQLKLVEPLRYL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR    ++GL 
Sbjct: 368 FKDEVRAAGLQLGLP 382


>gi|326926259|ref|XP_003209320.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Meleagris
           gallopavo]
          Length = 710

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 39/210 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+V +SGGVDS+V  ALL R      VI V +                  Q V +A + 
Sbjct: 255 KVLVLLSGGVDSTVCTALLNRALNRDQVIAVHIDN--------GFMRKRESQSVEEALK- 305

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKFSDL 129
              + +   V +    F N              TP   +             R +     
Sbjct: 306 --KLGIQVKVVNAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTF 361

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQQLC 186
           + +  +     +     ++        G  R  +     L    + +         + + 
Sbjct: 362 VKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAEVIKTHHNDTELIR 416

Query: 187 DL------RFPLGDMKKESVRDLAREMGLD 210
            L        PL D  K+ VR L RE+GL 
Sbjct: 417 KLREEGKVIEPLKDFHKDEVRVLGRELGLP 446


>gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
 gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
          Length = 529

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 62/207 (29%), Gaps = 66/207 (31%)

Query: 23  VVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+VA+SGG DS  VA LL     G  V+  T            +    + QDV   + VC
Sbjct: 19  VLVAVSGGADS--VALLLGAHEAGARVVAATF---------DHQLRADSAQDVAFVQDVC 67

Query: 81  DTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + V   V   D        V        A G +        RT++++ L    +    
Sbjct: 68  ARLGVPCEVGGADVA-----RVAR------ARGWS---VEAAARTLRYAFLTRAAKARRV 113

Query: 139 DVLATGHYIRSRLYV----------------GDDGKRRRIMCRP---------------- 166
           DV+ T H  R                       +G  RR   R                 
Sbjct: 114 DVILTAHTARDDAETYLMEALRGEAHPTGIPEANGHVRRPWLRAARADVEAYLQARAQAW 173

Query: 167 -MDLERDQSYFLFATTQQQLCDLRFPL 192
             D     +YF    T+  +     P+
Sbjct: 174 REDPSNADTYF----TRNWVRHAVMPV 196


>gi|207743214|ref|YP_002259606.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum
           IPO1609]
 gi|206594611|emb|CAQ61538.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum
           IPO1609]
          Length = 547

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 233 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ-MVLDMFE------G 282

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      +  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 283 RLHAKVVHANASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLT 330

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 331 NAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 383

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 384 KDEVRELGVALGLP 397


>gi|134278032|ref|ZP_01764747.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           305]
 gi|167911465|ref|ZP_02498556.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 112]
 gi|134251682|gb|EBA51761.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           305]
          Length = 539

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F + +       +     G   +               +  
Sbjct: 283 -------------VDASEQFLSHLAGVADPEHKRKIIGREFVEV-----------FQAEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 319 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|262306037|gb|ACY45611.1| gln amidotransferase [Eumesocampa frigilis]
          Length = 196

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++ +V++ +SGGVDS+V AAL    LK D   VI V +     RK    K          
Sbjct: 42  QNNKVLLLVSGGVDSTVCAALLNKALKED--QVIAVHIDNGFMRKNESIKVEQSL----- 94

Query: 75  DARRVCDTINVSHYVFDYEERFRN 98
                   + +   V +   +F N
Sbjct: 95  ------RKLGLRLRVVNASHQFYN 112


>gi|327310811|ref|YP_004337708.1| NAD+ synthetase [Thermoproteus uzoniensis 768-20]
 gi|326947290|gb|AEA12396.1| NAD+ synthetase [Thermoproteus uzoniensis 768-20]
          Length = 275

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 47/140 (33%), Gaps = 29/140 (20%)

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           QDV DA  V     V HYV           I  F + YAA    LP  + N  V   +L+
Sbjct: 75  QDVEDAVAVAKAFGVKHYVVS---------IDQFLAPYAA----LPFYEENDVVARGNLM 121

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  R       A  H +                 +  D   D                  
Sbjct: 122 ARIRMSILYYYANRHNLLVVGTGDKSELMLGYFTKYGDGGVD----------------IL 165

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+GD+ K  VR++AR +GL 
Sbjct: 166 PIGDLYKTQVREMARFLGLP 185


>gi|57641218|ref|YP_183696.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159542|dbj|BAD85472.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
          KOD1]
          Length = 215

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 13/75 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+V    SGG DSS+ A +L + GY+V  VT+                   +   A    
Sbjct: 2  MKVYHLYSGGKDSSLAAWILAKLGYEVRLVTVTF-------------GTLDNWKYAEETA 48

Query: 81 DTINVSHYVFDYEER 95
            +   H +      
Sbjct: 49 RRLGFEHEILKLSGE 63


>gi|322694984|gb|EFY86800.1| argininosuccinate synthase [Metarhizium acridum CQMa 102]
          Length = 394

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV +A SGG+D+SV+ A L   GY V+G                     +D    +   
Sbjct: 4   KRVCLAYSGGLDTSVILAWLIEKGYTVVG-------------------QNEDYDAVKAKA 44

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
           + I     +  D ++     ++ P     A  E          R V    ++ V +Q   
Sbjct: 45  EKIGAERMIIQDLQQELVEELVWPAVQCNAIYEDAYLLGTSLARPVIARAMMKVAKQYNC 104

Query: 139 DVLATG 144
           + L+ G
Sbjct: 105 EFLSHG 110


>gi|288800193|ref|ZP_06405652.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
          (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
          oral taxon 299 str. F0039]
 gi|288333441|gb|EFC71920.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
          (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
          oral taxon 299 str. F0039]
          Length = 444

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 24 VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          +VA+SGG DS V   L LKR GY+V       +   + S R    C        + +C  
Sbjct: 23 LVALSGGADS-VALLLVLKRLGYNVEAAHCNFHLRGEESDRDEDFC--------KDLCRE 73

Query: 83 INVSHYVFDY 92
          +++  ++  +
Sbjct: 74 LDIKLHLAHF 83


>gi|115375177|ref|ZP_01462444.1| argininosuccinate synthase [Stigmatella aurantiaca DW4/3-1]
 gi|115367828|gb|EAU66796.1| argininosuccinate synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 412

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +  TR N   + K P    VV+A SGG+D+S     L+  G+ V  VT            
Sbjct: 7   TPDTRRNRHPMSKKP----VVLAFSGGLDTSFCVVYLREQGHAVTTVT------VDTGGF 56

Query: 64  KGSCCAGQDVYDAR--RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDC 120
                       AR   V       H+  D      N  +    +         P  V  
Sbjct: 57  SADALKRMPEQSARLGAVA------HHTVDGRALLFNDYLRYLLAGNVLRGQAYPLSVSA 110

Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144
            R  + ++++ + R++GA  LA G
Sbjct: 111 ERVCQATEVVRMAREVGAQALAHG 134


>gi|42523689|ref|NP_969069.1| succinoglycan biosynthesis regulator [Bdellovibrio bacteriovorus
          HD100]
 gi|81617090|sp|Q6MKZ5|QUEC_BDEBA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|39575896|emb|CAE80062.1| succinoglycan biosynthesis regulator [Bdellovibrio bacteriovorus
          HD100]
          Length = 231

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K+ +VVV +S G+DS+V A    +  ++ V+ +T             G   A +++  +
Sbjct: 2  KKNKKVVVLLSAGLDSTVNAYEAIKHHHEIVLALTF----------NYGQRAAKKELEAS 51

Query: 77 RRVCDTINVSHYVFDY 92
            +   + + H V + 
Sbjct: 52 ANIAKHLGIPHKVVEL 67


>gi|116627714|ref|YP_820333.1| GMP synthase [Streptococcus thermophilus LMD-9]
 gi|116100991|gb|ABJ66137.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus thermophilus
           LMD-9]
 gi|312278262|gb|ADQ62919.1| Bifunctional GMP synthase/glutamineamidotransferase protein
           [Streptococcus thermophilus ND03]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 38/214 (17%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYN 56
           ++    +    + +   D +V++ +SGGVDSSVV  LL++  G  +  +      L+   
Sbjct: 208 MANFVDMQIAQIRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIFVDHGLLRKGE 267

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           S +  +  G                   ++    D  +RF + +                
Sbjct: 268 SDQVMEMLGG---------------KFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNE 312

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V       F D    ++  G D LA G        + + G       +           
Sbjct: 313 FVHV-----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------- 355

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 356 VGGLPEDMQFELIEPLNTLFKDEVRALGTELGMP 389


>gi|284037745|ref|YP_003387675.1| GMP synthase, large subunit [Spirosoma linguale DSM 74]
 gi|283817038|gb|ADB38876.1| GMP synthase, large subunit [Spirosoma linguale DSM 74]
          Length = 510

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 31/201 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            L +   D +VV+ +SGGVDSSV A L+ +     IG  L          RK       D
Sbjct: 207 QLKQKLGDDKVVLGLSGGVDSSVAAMLIHQA----IGKNLYCIFVDNGLLRKDEFLGVLD 262

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDL 129
            Y       T+ ++    D +++F  A+             G+T    V  +     + L
Sbjct: 263 SY------KTLGLNVKGVDAKDQFYTALAGLTDPEAKRKAIGKTF-IDVFDHE----AHL 311

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +     LG   +     I S    G     +                +          + 
Sbjct: 312 IEGVSWLGQGTI-YPDVIESVSVKGPSATIKSHHN------------VGGLPDFMKLKVV 358

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR + R +GL 
Sbjct: 359 EPLNTLFKDEVRAVGRTLGLP 379


>gi|255658227|ref|ZP_05403636.1| argininosuccinate synthase [Mitsuokella multacida DSM 20544]
 gi|260849537|gb|EEX69544.1| argininosuccinate synthase [Mitsuokella multacida DSM 20544]
          Length = 403

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 39/141 (27%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD- 75
           K  +VV+A SGG+D+SV+   LK    G +VI V              G       V+D 
Sbjct: 3   KIKKVVLAYSGGLDTSVIIPWLKEHYDGCEVIAV----------CADVGQGDELNAVHDK 52

Query: 76  -----ARRVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRT 123
                A +V        Y+ D +E F    + P           Y  G +        R 
Sbjct: 53  ALKSGASKV--------YIEDLKEEFLKEYVWPTLKAGAVYEDKYLLGTSFA------RP 98

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +    L+ + ++ GAD +A G
Sbjct: 99  IIAKKLVEIAKKEGADAIAHG 119


>gi|225026163|ref|ZP_03715355.1| hypothetical protein EUBHAL_00404 [Eubacterium hallii DSM 3353]
 gi|224956414|gb|EEG37623.1| hypothetical protein EUBHAL_00404 [Eubacterium hallii DSM 3353]
          Length = 515

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RV++A+SGGVDSSV A LL R  G  +  V     +     K +G      
Sbjct: 209 EIREKVGDGRVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGD----- 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
           +V          +++    + ++R+ +           AG T  P  +  R +       
Sbjct: 261 EVESVFGPEGQFDLNFIRVNAQQRYYDK---------LAGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++GA D LA G      +  G  G+          + +               
Sbjct: 309 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFK 360

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL D+ K+ VR    E+G+ 
Sbjct: 361 EIIEPLRDLFKDEVRKAGLELGIP 384


>gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase [Herbaspirillum seropedicae SmR1]
 gi|300076643|gb|ADJ66042.1| NH(3)-dependent NAD(+) synthetase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 565

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 25/191 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VVV  SGG+DS+V  AL     G  +V+ VT+            GS      V D+  +
Sbjct: 299 KVVVGSSGGIDSAVTIALAAEALGAQNVVAVTM-----PSVFSSAGS------VSDSETL 347

Query: 80  CDTINV---SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           C  + V    H + D    F +     FA+++ A    LP  +    V+ + L+  +   
Sbjct: 348 CQALGVTLFRHPIADLVREFEDG----FATAFGAPLRGLPLENLQARVRGAILMEYSNGY 403

Query: 137 GADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            A +L TG+     +       D      +    DL + + Y L      Q      P  
Sbjct: 404 DALLLTTGNKSEISVGYCTLYGDTNGGLGLI--GDLYKTEVYALARHLNAQAGREIIPAA 461

Query: 194 DMKKESVRDLA 204
            + K    +LA
Sbjct: 462 IIDKAPSAELA 472


>gi|291514930|emb|CBK64140.1| argininosuccinate synthase [Alistipes shahii WAL 8301]
          Length = 401

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S     L +  GYDV      + N+   SK +        +    +
Sbjct: 4   KKKVVLAFSGGLDTSFCVKYLSEEKGYDV---YTAIANTGGFSKPE--------LEKIEK 52

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQ 135
               +   +H   D E+ +    I              P    +  + F    ++   +Q
Sbjct: 53  RAMELGATAHATLDIEQEYYEKSIRYMVFGNILRNGTYPISVSSERI-FQAIAIIEYAKQ 111

Query: 136 LGADVLATG 144
           +GAD +A G
Sbjct: 112 IGADAVAHG 120


>gi|269929369|ref|YP_003321690.1| NAD+ synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269788726|gb|ACZ40868.1| NAD+ synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 247

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 41/187 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L  R           L   R  +    +    QDV  A+      
Sbjct: 24  VVGLSGGIDSAVVAGLATRA----------LGPERVTAAILPAHSNPQDVEHAKLAAAAF 73

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +   V D    +                + +   +    ++   L  +     A V+ T
Sbjct: 74  GLEPLVIDLSRAY------DVLRETLPPGSEMADANIKPRLRMIALYHLANTRNALVIGT 127

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G+  +S   VG   K         D   D                  P+G + K  V  L
Sbjct: 128 GN--KSEEMVGYFTKY-------GDGGVD----------------ILPIGGLYKHQVVAL 162

Query: 204 AREMGLD 210
           ARE+G+ 
Sbjct: 163 AREIGVP 169


>gi|225010099|ref|ZP_03700571.1| Argininosuccinate synthase [Flavobacteria bacterium MS024-3C]
 gi|225005578|gb|EEG43528.1| Argininosuccinate synthase [Flavobacteria bacterium MS024-3C]
          Length = 395

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S  A  L    G++V  VT                    D+++    
Sbjct: 2   KKLVLAYSGGLDTSYCAKYLSAEMGFEVHAVT-----------VNTGGFDPVDLHEMEEK 50

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +        D  E F   V+              P  V   R V+  +L+S  +++G
Sbjct: 51  AIALGAHAFKAIDGVEIFYQKVVKYLIFGNILKNNTYPLSVSAERIVQALELISYAKEVG 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 ASHIAHG 117


>gi|212550705|ref|YP_002309022.1| argininosuccinate synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548943|dbj|BAG83611.1| argininosuccinate synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 400

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S  V  L +  GY+V      L N+   ++         D+    +
Sbjct: 2   KRKVVLAYSGGLDTSFCVMYLSQELGYEV---YTALANTGGFTEE--------DLKKVEK 50

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFS--DLLSVTR 134
               +    +V  D  + F    I      +   G T  P    +  + F    +++ T+
Sbjct: 51  RAYKLGAKKHVNLDITKEFYEKGIKYMIFGNVLRGAT-YPISVSSERI-FQAIAIINYTK 108

Query: 135 QLGADVLATG 144
           ++ AD +A G
Sbjct: 109 KIKADYVAHG 118


>gi|300704204|ref|YP_003745807.1| gmp synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071868|emb|CBJ43197.1| GMP synthetase [Ralstonia solanacearum CFBP2957]
          Length = 539

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGQ-MVLDMFE------G 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      +  E+F           + AG T     +  R +   + + V     ++L 
Sbjct: 275 RLHAKVVHANASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAEAKKLT 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|289450239|ref|YP_003475271.1| hypothetical protein HMPREF0868_0965 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184786|gb|ADC91211.1| TIGR00268 family protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 417

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 61/226 (26%)

Query: 1   MVVSEATRLNSLDLDKN-PKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYN 56
           + +S   R + L L    PKD ++ VA SGGVDSS    LL    Y    V+G       
Sbjct: 139 LFLSGEARTDYLALAAALPKDGKLAVAFSGGVDSS---LLL----YVADRVLG------- 184

Query: 57  SRKASKRKGSCCAG--QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
            + A+   G       +++  A  +  +  ++     + +     +             P
Sbjct: 185 GQNATGILGISPFTPRREIQAALSMSKSYGLALSTASFSDTEMRTLY------------P 232

Query: 115 LP---CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
            P   C  C + + FS+ +    + G   LA G  +       DD    R   + +    
Sbjct: 233 NPEDRCYHCKKML-FSNFIDFAVKHGFPYLAEGSNL-------DDMGDYRPGLKAIAEL- 283

Query: 172 DQSYFLFATTQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKS 215
                           +  PL      K+ +R L+  +GL   +  
Sbjct: 284 ---------------HVLSPLRVAQFDKKKIRSLSAALGLPTKNMP 314


>gi|322421067|ref|YP_004200290.1| GMP synthase large subunit [Geobacter sp. M18]
 gi|320127454|gb|ADW15014.1| GMP synthase, large subunit [Geobacter sp. M18]
          Length = 516

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 28/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDS+VVA L+ +  G  +  V +     RK    K      +         
Sbjct: 221 KVLCALSGGVDSAVVAVLIHKAIGDQLHCVFVNNGLLRKGEADKVVNLFTKHFK------ 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
               ++    D  +RF            +  E     +  N  +         ++LG  D
Sbjct: 275 ----INLTHVDAADRFLG-----MLEGISDPEQK-RKIIGNEFI--YLFEEEAKKLGQVD 322

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G  +   +      K    + +           +    ++    L  P+ ++ K+ 
Sbjct: 323 YLAQG-TLYPDVIESVSTKGPSAVIKSHHN-------VGGLPEKMNLKLLEPVRELFKDE 374

Query: 200 VRDLAREMGLD 210
           VR L +E+G+ 
Sbjct: 375 VRLLGKELGMP 385


>gi|124485953|ref|YP_001030569.1| GMP synthase [Methanocorpusculum labreanum Z]
 gi|124363494|gb|ABN07302.1| GMP synthase (glutamine-hydrolyzing) [Methanocorpusculum labreanum
           Z]
          Length = 508

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 37/205 (18%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAG 70
           L L +   D +V+ A+SGGVDSSV A L+ +  G  +  +     +     K +G+    
Sbjct: 204 LQLREKIGDKKVLCALSGGVDSSVAAVLINKAVGKQLTCIF---VDHGLLRKNEGNEVEE 260

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----F 126
                     +  +++    + E++F             AG   +   +  R +      
Sbjct: 261 IFR-------NQFDINLIRVNVEDQFLGK---------LAG---VSDPEKKRKIIGEEFI 301

Query: 127 SDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
               +  +++G  D L  G      +  G            +    D   F         
Sbjct: 302 RVFEAEAKKIGTVDFLVQGTIYPDVIESGPGAAAVIKSHHNVGGLPDNVDF--------- 352

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            ++  PL  + K+ VR    E+G+ 
Sbjct: 353 KEIIEPLRILFKDEVRRAGLELGIP 377


>gi|119511109|ref|ZP_01630227.1| hypothetical protein N9414_16856 [Nodularia spumigena CCY9414]
 gi|119464204|gb|EAW45123.1| hypothetical protein N9414_16856 [Nodularia spumigena CCY9414]
          Length = 234

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +M+ V+ +SGG+DSS V    K DGY+   +                    ++++ A  V
Sbjct: 9   EMKAVILLSGGLDSSTVLYQAKADGYECHPI-----------SFDYQQRHRRELHSAFLV 57

Query: 80  CDTIN-VSHYVFDYEERFR------NAVI----VPFASSYAAGETPLPCVDCNRTVKFSD 128
             T+  V H V +++ R        +  I            +   P+  V    T+  S 
Sbjct: 58  AQTLGVVKHQVVNFDLRLWGGSALTDETINLPQERSLDE-MSQNIPVTYVPARNTIFLSF 116

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-- 186
            L     + A  +  G          D        CRP  ++  Q  F   T Q +    
Sbjct: 117 ALGYAEAIAAQRVYIGVNALDYSGYPD--------CRPDYIQAMQKVFQLGTKQGREGNP 168

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D+KK  +  L  ++G+ 
Sbjct: 169 IKIVAPLIDLKKTEIIQLGNQLGVP 193


>gi|253699425|ref|YP_003020614.1| GMP synthase [Geobacter sp. M21]
 gi|251774275|gb|ACT16856.1| GMP synthase, large subunit [Geobacter sp. M21]
          Length = 516

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 28/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDS+VVA L+ +  G  +  V +     RK    K      +         
Sbjct: 221 KVLCALSGGVDSAVVAVLIHKAIGDQLHCVFVNNGLLRKGEADKVVNLFTKHFK------ 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
               ++    D  +RF            +  E     +  N  +         ++LG  D
Sbjct: 275 ----INLTHVDAADRFLG-----MLEGISDPEQK-RKIIGNEFI--YLFEEEAKKLGQVD 322

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G  +   +      K    + +           +    ++    L  P+ ++ K+ 
Sbjct: 323 YLAQG-TLYPDVIESVSTKGPSAVIKSHHN-------VGGLPEKMNLKLLEPVRELFKDE 374

Query: 200 VRDLAREMGLD 210
           VR L +E+G+ 
Sbjct: 375 VRLLGKELGMP 385


>gi|289582131|ref|YP_003480597.1| NAD+ synthetase [Natrialba magadii ATCC 43099]
 gi|289531684|gb|ADD06035.1| NAD+ synthetase [Natrialba magadii ATCC 43099]
          Length = 284

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 45/191 (23%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +A+SGG+DS+ +A L     G D V  +TL             +     ++ DA RV + 
Sbjct: 49  IALSGGIDSTTMAYLAVEALGADNVHAITL-----------PKAVNEDTNMSDAERVAEE 97

Query: 83  INVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           + + + V +         I P          A  +         R V   +  +  R   
Sbjct: 98  LGIEYDVIE---------IDPIMDEILELADAENQNKSEDRWEGRYV--GNTSARVRMTI 146

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             ++A      +R+ +G     R  +      +    Y               PLG++ K
Sbjct: 147 TYLIANRE---NRIVLGT--GNRAELATGYVTK----YGDGGVD-------CNPLGNLYK 190

Query: 198 ESVRDLAREMG 208
           + VR +A  +G
Sbjct: 191 QQVRQVAAHLG 201


>gi|164663255|ref|XP_001732749.1| hypothetical protein MGL_0524 [Malassezia globosa CBS 7966]
 gi|159106652|gb|EDP45535.1| hypothetical protein MGL_0524 [Malassezia globosa CBS 7966]
          Length = 545

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 68/213 (31%), Gaps = 50/213 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           RV+ A+SGGVDSSV A ++       IG                       + +A++V  
Sbjct: 228 RVIGAISGGVDSSVAAKIMHEA----IG---------DRFHAIMVDNGVLRMNEAKQVYE 274

Query: 80  --CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              + + V   V D  + F      V  P       G T +                   
Sbjct: 275 MLSEHLGVQLTVVDASDLFLGRLQDVEDPERKRKIIGNTFIEV-----------FEREAE 323

Query: 135 QLGADVLATGHYIRSRLYVGDDGK---RRRIMCRPMD--------LERDQSYF------L 177
           +L  D  A     ++  + G  GK   +   + +             +  S        +
Sbjct: 324 RLEKD--AEAQEAQALSHGGAPGKIAGKYEFLLQGTLYPDVIESISFKGPSATIKTHHNV 381

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +     L  PL ++ K+ VR+L + MG+ 
Sbjct: 382 GGLLEDMKLKLIEPLRELFKDEVRELGKLMGIP 414


>gi|145612487|ref|XP_001412111.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145019644|gb|EDK03872.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 415

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L   GY V+   L                  +D  + + 
Sbjct: 2   SKGRVCLAYSGGLDTSTILVWLIEQGYTVV-CFLAN------------VGQEEDWDEVKA 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               +      + D ++ F   ++       A  E          R +     + V  Q 
Sbjct: 49  KAKKLGAEEMVILDLQKEFVEQIVFRAIQCNAIYEDRYLLGTSLARPIIARAQVRVAEQY 108

Query: 137 GADVLATG 144
               ++ G
Sbjct: 109 NCQYVSHG 116


>gi|145612495|ref|XP_367244.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145019648|gb|EDK03876.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 415

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L   GY V+   L                  +D  + + 
Sbjct: 2   SKGRVCLAYSGGLDTSTILVWLIEQGYTVV-CFLAN------------VGQEEDWDEVKA 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               +      + D ++ F   ++       A  E          R +     + V  Q 
Sbjct: 49  KAKKLGAEEMVILDLQKEFVEQIVFRAIQCNAIYEDRYLLGTSLARPIIARAQVRVAEQY 108

Query: 137 GADVLATG 144
               ++ G
Sbjct: 109 NCQYVSHG 116


>gi|34785183|gb|AAH56730.1| Guanine monphosphate synthetase [Danio rerio]
 gi|220672807|emb|CAX14206.1| guanine monphosphate synthetase [Danio rerio]
          Length = 359

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 19/91 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSC 67
           ++ +     +V+V +SGGVDS+V  ALL     +     VI V +               
Sbjct: 228 EIREKVDKSKVLVLLSGGVDSTVCTALLNKALNQEQ---VIAVHIDNGF----------- 273

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRN 98
              ++          + +   V +    F N
Sbjct: 274 MRKRESQSVEEALTKLGIKLKVVNAAHTFYN 304


>gi|295134753|ref|YP_003585429.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Zunongwangia profunda SM-A87]
 gi|294982768|gb|ADF53233.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Zunongwangia profunda SM-A87]
          Length = 509

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 43/211 (20%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC 67
           L   +L +   D +VV+ +SGGVDS+V A LL +  G ++  + +     RK        
Sbjct: 202 LTVAELKEKIGDDKVVLGLSGGVDSTVAAMLLHKAIGKNLYCIFVNNGLLRKNEFED--- 258

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTV 124
                  D       + ++    D   RF +A   +  P     A G T +         
Sbjct: 259 -VLHQYKD-------MGLNVKGVDSSARFLDALAGISDPELKRKAIGNTFIEV------- 303

Query: 125 KFSDLLSVTRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
                     ++     LA        I S    G     +                +  
Sbjct: 304 ----FDDEAHEIKDVTYLAQGTIYPDVIESISVNGPSVTIKSHHN------------VGG 347

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                   +  PL  + K+ VR +  E+G+ 
Sbjct: 348 LPDFMKLKVVEPLRMLFKDEVRRVGAELGIA 378


>gi|293567955|ref|ZP_06679296.1| GMP synthase [Enterococcus faecium E1071]
 gi|291589540|gb|EFF21347.1| GMP synthase [Enterococcus faecium E1071]
          Length = 303

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 33/195 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ +SGGVDSSVV  LL++     IG         + +         +    A +V 
Sbjct: 6   KKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLTSIFVDHGLLRKGE-AEQVM 52

Query: 81  DTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQ 135
           +++     ++    D  +RF + +                 V       F D    +  +
Sbjct: 53  ESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEFVYV-----FDDEATKLAGE 107

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G   LA G        V + G       +           +    +    +L  PL  +
Sbjct: 108 EGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLNTL 157

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L  ++G+ 
Sbjct: 158 FKDEVRELGTQLGMP 172


>gi|284050313|ref|ZP_06380523.1| hypothetical protein AplaP_02442 [Arthrospira platensis str.
           Paraca]
 gi|291570204|dbj|BAI92476.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 275

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 89/239 (37%), Gaps = 61/239 (25%)

Query: 1   MVVSEATRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           MV  +  +L SL   +++       ++A SGG+DS++VA +     YD++G      +  
Sbjct: 1   MVSEKLQQLQSLFTGMEQA------LIAYSGGIDSTLVAKIA----YDILG------DRA 44

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-- 116
            A          +D+ DAR     I +SH     EE +   +  P         T  P  
Sbjct: 45  LAVTAVSPSLLPEDLEDARIQAAMIGISH-----EEIYTQEMANP-------NYTDNPVN 92

Query: 117 -CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            C  C   +    L  + RQ G   +  G          DD +  R   +          
Sbjct: 93  RCYFCKSEL-HDQLKPLARQRGYLYIVDG-------VNADDLRDYRPGVKA--------- 135

Query: 176 FLFATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
                   +   +R PL +  + K  VR++++ +GL   DK  SQ  C   +  Y + +
Sbjct: 136 -------AKERGVRSPLAEVGVTKAEVREISKYLGLSCWDKP-SQP-CLSSRFPYGEEI 185


>gi|269926075|ref|YP_003322698.1| GMP synthase, large subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789735|gb|ACZ41876.1| GMP synthase, large subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 531

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 33/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSV A L+ +  G  ++ + +     R     +                
Sbjct: 235 KVICALSGGVDSSVAATLIHKAIGDRLVCIFVNNGLLRLNEAEEVLGVLRDQ-------- 286

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             +N+ +   D  +RF +A   V+ P       GE                      +LG
Sbjct: 287 QHLNIRY--VDATDRFLSALHGVMDPEEKRKRIGECF-----------IRVFEEEASKLG 333

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             + LA G      +       +     +           +          L  PL  + 
Sbjct: 334 EIEFLAQGTLYPDVIESATADTKAAAKIKTHHN-------VGGLPPDLKFKLLEPLKYLF 386

Query: 197 KESVRDLAREMGLD 210
           K+ VR++ + +GL 
Sbjct: 387 KDEVREVGKNLGLP 400


>gi|213864988|ref|ZP_03387107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 42

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+   
Sbjct: 1   DLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLG 42


>gi|199594476|gb|ACH90702.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas
           nitritireducens]
          Length = 184

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL R  G  +  V     ++     ++G           + + D
Sbjct: 38  VILGLSGGVDSSVVAALLHRAIGAQLTCVF---VDTGLLRFQEGDQVM-------QMMAD 87

Query: 82  TINVSHYVFDYEERFRNA 99
            + V     +  +R+  A
Sbjct: 88  NMGVKVVRVNAADRYFKA 105


>gi|312900465|ref|ZP_07759770.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX0470]
 gi|311292416|gb|EFQ70972.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX0470]
          Length = 278

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLSLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQAKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|315230077|ref|YP_004070513.1| TilS-like tRNA(Ile)-lysidine synthetase [Thermococcus barophilus
           MP]
 gi|315183105|gb|ADT83290.1| TilS-like tRNA(Ile)-lysidine synthetase [Thermococcus barophilus
           MP]
          Length = 269

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 48/234 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              ++++  SGG DSS+   ++K+ G DV  +T                   + +    R
Sbjct: 19  HKKKILLMFSGGKDSSLALYIMKKAGLDVSAITF-----------FHKWSWRETLLWGMR 67

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + V HY+ D  E      I         G+    C+ C + +   +     +  G 
Sbjct: 68  FTEKLRVEHYLIDITEGLLKNSI---------GKKGPICIHCKKVM-MRNAYWFAKINGF 117

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL---RF-PLGD 194
            VLA G     ++                    DQ  +       ++  +    F PL  
Sbjct: 118 KVLAKGDNANDKII---------------GALLDQ--WKGDIRLSEIPRIGIPVFRPLIK 160

Query: 195 MKKESVRDLAREMGLDIADKSDS------QDICFVQQGKYFDVVKRINAGIALE 242
              E V  LA+E G+      +       ++ C +Q    F+++K+    +A E
Sbjct: 161 YTAEEVEKLAKEAGIKPYRMYEYGRRRQWREGCPLQYIDKFEIIKQEYFNLAYE 214


>gi|307637706|gb|ADN80156.1| GMP synthase [Helicobacter pylori 908]
 gi|325996309|gb|ADZ51714.1| GMP synthase [Helicobacter pylori 2018]
 gi|325997898|gb|ADZ50106.1| GMP synthase [Helicobacter pylori 2017]
          Length = 508

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLKIPLDTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+  R L +E+G
Sbjct: 358 PLRELFKDEARLLGKELG 375


>gi|149011672|ref|ZP_01832868.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764103|gb|EDK71035.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP19-BS75]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           ++   +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EEMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|52079121|ref|YP_077912.1| GMP synthase [Bacillus licheniformis ATCC 14580]
 gi|52784488|ref|YP_090317.1| GMP synthase [Bacillus licheniformis ATCC 14580]
 gi|319647105|ref|ZP_08001331.1| GMP synthase [Bacillus sp. BT1B_CT2]
 gi|81386308|sp|Q65MU0|GUAA_BACLD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52002332|gb|AAU22274.1| GMP synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346990|gb|AAU39624.1| GuaA [Bacillus licheniformis ATCC 14580]
 gi|317390929|gb|EFV71730.1| GMP synthase [Bacillus sp. BT1B_CT2]
          Length = 513

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EAEKLKGIDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGTELGIP 382


>gi|308270746|emb|CBX27356.1| hypothetical protein N47_H21780 [uncultured Desulfobacterium sp.]
          Length = 275

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 43/193 (22%)

Query: 24  VVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
            +A SGGVDSS + AL  +  G  VI +T                   ++   A+     
Sbjct: 25  AIAFSGGVDSSFLLALAHQVLGKKVIAIT-----------AVSPVHPARETEFAKSFAKK 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+ H +    +     +            T   C  C + + F  LL    + G   LA
Sbjct: 74  RNIKHKII---KSDEMDIAEFT------ANTRNRCYICKKNL-FPRLLECAVKSGIKDLA 123

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G    + +   DD +   +        +                         K+ +R+
Sbjct: 124 HG----ANMDDLDDFRPGFM---AASELK----IAAPLIDA----------GFSKQQIRE 162

Query: 203 LAREMGLDIADKS 215
           L++ M L+  +K 
Sbjct: 163 LSKNMNLETWNKP 175


>gi|218674235|ref|ZP_03523904.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli GR56]
          Length = 486

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 30/201 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R++VA+SGG DS+ +  LL      V     L++              +  +      +C
Sbjct: 24  RILVAISGGSDSTGLLLLLDEA---VKAAPHLKISLCAATVDHGLRAGSADEARQVAALC 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-CNRTVKFSDLLSVTRQLGAD 139
            ++ + H +                 +   GE P   +    R  ++  L     +LGA 
Sbjct: 81  ASLGIPHII-----------------AAWQGEKPKTGIMAAAREARYDLLAESAERLGAK 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TGH +        D +R  ++ R M  E+  S    A    +   +  PL    + +
Sbjct: 124 LIVTGHTL--------DDQRETLLMRGMRTEQRSSGIADAVLFDRRFWILRPLLFSSRAN 175

Query: 200 VRDLAREMGLDIADKSDSQDI 220
           +R   RE  +   D   ++D+
Sbjct: 176 IRAFLRERDVAWIDDPSNEDV 196


>gi|125717986|ref|YP_001035119.1| GMP synthase [Streptococcus sanguinis SK36]
 gi|125497903|gb|ABN44569.1| GMP synthase [glutamine-hydrolyzing], putative [Streptococcus
           sanguinis SK36]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|45358795|ref|NP_988352.1| PP-loop domain-containing protein [Methanococcus maripaludis S2]
 gi|45047661|emb|CAF30788.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 296

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 24/141 (17%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTL-QLYNSRKASKRKGS 66
           LN+ + + N KD +++V +SGG DS+V  A+ K  G +V   V     ++   ++     
Sbjct: 28  LNNFE-ELNLKDEKIIVMLSGGKDSAVSLAIAKDLGLNVHLCVHFVHKWSWDISTNE--- 83

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                    A+++ D  NV     D  E          A      +    C  C   +K 
Sbjct: 84  ---------AKKLADRFNVPIIFPDITEE--------LAKKTQGAKGKSICRICKTIMK- 125

Query: 127 SDLLSVTRQLGADVLATGHYI 147
           + ++ + +   A ++ TG   
Sbjct: 126 ARMMDIAKVENAKIIMTGETA 146


>gi|297623979|ref|YP_003705413.1| argininosuccinate synthase [Truepera radiovictrix DSM 17093]
 gi|297165159|gb|ADI14870.1| argininosuccinate synthase [Truepera radiovictrix DSM 17093]
          Length = 430

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 57/214 (26%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            K  +VV+A SGG+D+SV+ A L+   G +V+  T                  G++V +A
Sbjct: 19  KKAQKVVLAYSGGLDTSVILAWLREVYGAEVVAFT-------------ADIGQGEEVAEA 65

Query: 77  RRVCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
           +        V  Y  D +  F    + P   S       Y  G +        R +    
Sbjct: 66  KEKALRTGAVQAYAVDLQREFVQDFVFPVLRSGALYEGYYLLGTSFA------RPLIAKK 119

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQL 185
           ++ +    GAD +A G                           DQ  F    +A      
Sbjct: 120 MVEIAEAEGADAVAHG---------------------ATGKGNDQVRFELSAYALKPDI- 157

Query: 186 CDLRFPLGDMK---KESVRDLAREMGLDIADKSD 216
             +  P  +     +E     ARE G+ +    +
Sbjct: 158 -TVIAPWREWTLRGREDCVRYARERGIPVGVTKE 190


>gi|225351906|ref|ZP_03742929.1| hypothetical protein BIFPSEUDO_03510 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157153|gb|EEG70492.1| hypothetical protein BIFPSEUDO_03510 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 64/209 (30%), Gaps = 59/209 (28%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEAEQVKHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG--ETPLPCVDCNRTVK 125
               +     D  E F            +  +I   F  ++     +         + VK
Sbjct: 270 ---GIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGASGKEVK 326

Query: 126 F---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           F     L   V    G D  A      +   + DD K +                     
Sbjct: 327 FLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDIKFQ--------------------- 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 L  PL  + K+ VR +  E+GL 
Sbjct: 366 ------LVEPLRTLFKDEVRAIGTELGLP 388


>gi|117618614|ref|YP_856521.1| GMP synthase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|226738375|sp|A0KJS0|GUAA_AERHH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|117560021|gb|ABK36969.1| GMP synthase (glutamine-hydrolyzing) [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 529

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 27/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVA L+ R  G  +  V +                    + + ++
Sbjct: 231 DDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDN--------------GLLRLNEGQQ 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           V +     H+  +  +         F S+ A  + P         V         ++L  
Sbjct: 277 VMEMFG-DHFGLNIVKVDAE---ERFLSALAGEDEPEAKRKIIGRVFVEVFDDEAKKLKN 332

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +        +  + +           +    ++    L  PL ++ K
Sbjct: 333 ARWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEEMKMGLVEPLRELFK 385

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+GL 
Sbjct: 386 DEVRRVGLELGLP 398


>gi|327489576|gb|EGF21368.1| GMP synthase [Streptococcus sanguinis SK1058]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|300871832|ref|YP_003786705.1| bifunctional GMP synthase glutamine amidotransferase protein
           [Brachyspira pilosicoli 95/1000]
 gi|300689533|gb|ADK32204.1| bifunctional GMP synthase glutamine amidotransferase protein
           [Brachyspira pilosicoli 95/1000]
          Length = 514

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V++ +SGGVDSSV A L+++     IG  L+         RK       +V+     
Sbjct: 217 DKNVILGLSGGVDSSVAAVLIEKA----IGKQLKCIFVNNGLLRKDEDKKVVEVFR---- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            D  N+     D  +RF +           AG T     +  R +      S      ++
Sbjct: 269 -DNFNIDLIYVDASKRFLDK---------LAGVT---DPEQKRKIIGHEFVSVFNDEAKK 315

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +     LA G        +  D      +     + +   + +    +    +L  P  +
Sbjct: 316 IENVGFLAQG-------TLYPDVIESVSLRGSSAVIKSH-HNVGGLPKDMKFELLEPFRE 367

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+ L 
Sbjct: 368 LFKDEVREIGLELKLP 383


>gi|209966151|ref|YP_002299066.1| argininosuccinate synthase [Rhodospirillum centenum SW]
 gi|226697528|sp|B6IVD0|ASSY_RHOCS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|209959617|gb|ACJ00254.1| argininosuccinate synthase [Rhodospirillum centenum SW]
          Length = 406

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 61/195 (31%), Gaps = 64/195 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 6   KKVVLAYSGGLDTSVILKWLQET-YRCEVVTF-----------TADLGQGEELEPARAKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P          +Y  G +    +   R +      
Sbjct: 54  QMLGIRPENIFIDDLREEFVRDFVFPMFRANTLYEGTYLLGTSIARPLISKRQI------ 107

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +   +GAD +A G                           DQ              +RF
Sbjct: 108 EIANLVGADAVAHG---------------------ATGKGNDQ--------------VRF 132

Query: 191 PLGDM-KKESVRDLA 204
            LG    K  VR +A
Sbjct: 133 ELGYYALKPDVRVIA 147


>gi|146281587|ref|YP_001171740.1| argininosuccinate synthase [Pseudomonas stutzeri A1501]
 gi|166221011|sp|A4VIU7|ASSY_PSEU5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145569792|gb|ABP78898.1| argininosuccinate synthase [Pseudomonas stutzeri A1501]
 gi|327479765|gb|AEA83075.1| argininosuccinate synthase [Pseudomonas stutzeri DSM 4166]
          Length = 405

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|114569533|ref|YP_756213.1| NH(3)-dependent NAD(+) synthetase [Maricaulis maris MCS10]
 gi|114339995|gb|ABI65275.1| NH(3)-dependent NAD(+) synthetase [Maricaulis maris MCS10]
          Length = 552

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 13/73 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ MSGG+DS++ AA+     G D V  V +                + +   DA+   
Sbjct: 289 VVLGMSGGIDSAISAAIAVDALGADKVWAVMM-----------PSKYTSQESFEDAKACA 337

Query: 81  DTINVSHYVFDYE 93
           + + + + + D E
Sbjct: 338 EALGIRYDIIDVE 350


>gi|147669399|ref|YP_001214217.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Dehalococcoides sp. BAV1]
 gi|289432665|ref|YP_003462538.1| GMP synthase, large subunit [Dehalococcoides sp. GT]
 gi|146270347|gb|ABQ17339.1| GMP synthase (glutamine-hydrolyzing) [Dehalococcoides sp. BAV1]
 gi|288946385|gb|ADC74082.1| GMP synthase, large subunit [Dehalococcoides sp. GT]
          Length = 560

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDS+VVA+L+ +  G  +  + +     R+    +              
Sbjct: 262 DGQVICALSGGVDSAVVASLIHKAIGDQLTCIYVNNGLLRREEADRTLHVFK-------- 313

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
             + + +     D         I  F  S      P     V  +  +K         +L
Sbjct: 314 --NHMGMKIIYVDA--------IDRFLESLGGITDPEQKRKVIGSEFIKV--FEDEACKL 361

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D LA G      +       +     +           +          L  PL  +
Sbjct: 362 GQIDFLAQGTLYPDVIESVSSVSKASAKIKSHHN-------VGGLPAHMKLKLIEPLRYL 414

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L +E+GL 
Sbjct: 415 FKDEVRLLGKELGLP 429


>gi|319936822|ref|ZP_08011234.1| argininosuccinate synthase [Coprobacillus sp. 29_1]
 gi|319808090|gb|EFW04662.1| argininosuccinate synthase [Coprobacillus sp. 29_1]
          Length = 406

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 18/133 (13%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +  +VV+A SGG+D+S++ + LK + G +VI V              G      ++ 
Sbjct: 2   EKKQYKKVVLAYSGGLDTSIIISWLKENYGCEVIAV-------------AGDVGQADELE 48

Query: 75  --DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLS 131
             +A+ +    +  +YV D +E F N  I P   + A  E          R +    L+ 
Sbjct: 49  GLEAKALATGAS-KYYVADCKEEFVNDFIFPAVKANAMYEGKYLLGTSLARPIIAKKLVD 107

Query: 132 VTRQLGADVLATG 144
           + +  GAD +  G
Sbjct: 108 IAKAEGADAICHG 120


>gi|212716079|ref|ZP_03324207.1| hypothetical protein BIFCAT_00992 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661446|gb|EEB22021.1| hypothetical protein BIFCAT_00992 [Bifidobacterium catenulatum DSM
           16992]
          Length = 520

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 64/209 (30%), Gaps = 59/209 (28%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEAEQVKHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG--ETPLPCVDCNRTVK 125
               +     D  E F            +  +I   F  ++     +         + VK
Sbjct: 270 ---GIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGASGKEVK 326

Query: 126 F---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           F     L   V    G D  A      +   + DD K +                     
Sbjct: 327 FLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDIKFQ--------------------- 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 L  PL  + K+ VR +  E+GL 
Sbjct: 366 ------LVEPLRTLFKDEVRAIGTELGLP 388


>gi|241206181|ref|YP_002977277.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860071|gb|ACS57738.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 491

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 32/201 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R++VA+SGG DS+ +  LL      V     L++              +  +  +   +C
Sbjct: 24  RILVAISGGSDSTGLLLLLDEA---VKAAPHLKISLYAATVDHALRAGSADEAREVAALC 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-CNRTVKFSDLLSVTRQLGAD 139
            ++ ++H +                     G+ P   +    R  ++  L +  ++  AD
Sbjct: 81  ASLGIAHTIM-----------------IWQGDKPKTGIMAAAREARYGLLATAAKEFKAD 123

Query: 140 VLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ++ TGH +   R  +   G R   +   +         LF  +   L  L F      + 
Sbjct: 124 LIVTGHTFDDQRETLQMRGMRTEQVSTGIADA-----VLFDRSFWILRPLLF----STRA 174

Query: 199 SVRDLAREMGLDIADKSDSQD 219
            +R   +E G+   D   ++D
Sbjct: 175 DIRAFLKERGVPWIDDPSNED 195


>gi|88604066|ref|YP_504244.1| ExsB [Methanospirillum hungatei JF-1]
 gi|110816233|sp|Q2FS65|QUEC_METHJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|88189528|gb|ABD42525.1| preQ(0) biosynthesis protein QueC [Methanospirillum hungatei JF-1]
          Length = 220

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 22/134 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +SGG+DSS +A L K DGYD++ +    ++  + ++ K   C       A+R+ 
Sbjct: 1   MKAVCLLSGGMDSSTLACLAKHDGYDILALH---FSYGQRTEEKEREC-------AKRIA 50

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD---CNRTVKFS--DLL---- 130
             +N +     D    +  AV     + YA              +  V F   +LL    
Sbjct: 51  RHLNALEFLEVDLT--YLKAVGASSLTDYAMQVKAHEDAGDGIPDTYVPFRNANLLSVAT 108

Query: 131 SVTRQLGADVLATG 144
           S     GAD +  G
Sbjct: 109 SFAEARGADAIYIG 122


>gi|320009022|gb|ADW03872.1| GMP synthase, large subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 528

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 226 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T      V D E+RF +A+             G   +   +  +       L + ++
Sbjct: 277 VAAT-GAKLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQ-------LEILQE 328

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G +V            V   G       +           +         +L  PL  +
Sbjct: 329 EGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPDDIEFELVEPLRQL 381

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + +E+GL 
Sbjct: 382 FKDEVRMVGQELGLP 396


>gi|257421462|ref|ZP_05598452.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis X98]
 gi|257163286|gb|EEU93246.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis X98]
          Length = 455

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 157 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------AEQ 202

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVT 133
           V +++     ++    D +ERF + +                 V       F D    + 
Sbjct: 203 VMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYV-----FDDEATKLA 257

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            + G   LA G        V + G       +           +    +    +L  PL 
Sbjct: 258 GEEGVSFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGLPEDMQFELIEPLN 307

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 308 TLFKDEVRALGTELGMP 324


>gi|254526370|ref|ZP_05138422.1| GMP synthase [Prochlorococcus marinus str. MIT 9202]
 gi|221537794|gb|EEE40247.1| GMP synthase [Prochlorococcus marinus str. MIT 9202]
          Length = 528

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D    
Sbjct: 224 NKKVLLALSGGVDSSTLAFLLNKA----IGNQLTCMFIDQGFMRKGEPEFLMNFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++     +  +RF              G T     +  R +            + +
Sbjct: 276 -KKFHIKVEYINARKRFIAK---------LKGIT---DPEQKRKIIGEEFIRVFEEESNR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG    LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFQYLAQGTLYPDVIESAGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR +   +GL 
Sbjct: 381 KLFKDEVRQVGAALGLP 397


>gi|149372519|ref|ZP_01891631.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49]
 gi|149354562|gb|EDM43126.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49]
          Length = 436

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            N KD +++VA SGG+DS+V+  LLK+ G+ +           +AS          D   
Sbjct: 14  PNLKDKKIIVACSGGLDSTVLTRLLKQLGFTICIAHCNFSLRGEASDG--------DAAF 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVP--FASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              +   +++  Y           V     FA+ +             R +++     + 
Sbjct: 66  VENLATELDIPFY---------KTVFDTKAFANDHKLSTQ-----MAARELRYQWFKELR 111

Query: 134 RQLGADVLATGHYI 147
            Q+  D++AT H+ 
Sbjct: 112 TQIKFDLIATAHHA 125


>gi|312880435|ref|ZP_07740235.1| GMP synthase (glutamine-hydrolyzing) [Aminomonas paucivorans DSM
           12260]
 gi|310783726|gb|EFQ24124.1| GMP synthase (glutamine-hydrolyzing) [Aminomonas paucivorans DSM
           12260]
          Length = 513

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 70/193 (36%), Gaps = 33/193 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+  +SGGVDS+V A L  R     +G  LQ         RK        V D  RV  
Sbjct: 219 RVLCGLSGGVDSTVAAVLTARA----LGDQLQCLFVDNGLLRKDE---ADQVMDTYRV-- 269

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
            +++S +  D   RF  A   V  P A   A G T +                V   L G
Sbjct: 270 -LDLSVHRVDAGGRFLGALAGVTDPEAKRKAIGWTFVEV-----------FEDVAGGLGG 317

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  L  G      +  G  GK   ++    +        +    +     +  PL D+ K
Sbjct: 318 AAWLLQGTLYPDVIESGHQGKGASVIKSHHN--------VGGLPEIMKMKVLEPLRDLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR + R +G+ 
Sbjct: 370 DEVRQIGRLLGIP 382


>gi|167534664|ref|XP_001749007.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772431|gb|EDQ86082.1| predicted protein [Monosiga brevicollis MX1]
          Length = 783

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 29/138 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +      VV+A SGG+D+S +       GY+VI   +                  +D   
Sbjct: 370 EPGSKGTVVLAYSGGLDTSCILCWFIEQGYEVIA-YMA------------DIGQAEDFEA 416

Query: 76  ARRVCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGE-TPLPCVDCNRTVKF 126
           AR     +     ++ D ++ F    I P           Y  G     PC+   +    
Sbjct: 417 ARAKATKLGAKKVFIEDLKKEFVTEFIWPTVQANSIYEDRYLMGTAIARPCIARRQ---- 472

Query: 127 SDLLSVTRQLGADVLATG 144
              + +  Q GA  ++ G
Sbjct: 473 ---IEIAIQEGAQFVSHG 487


>gi|146296983|ref|YP_001180754.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|259647688|sp|A4XKX8|GUAA_CALS8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145410559|gb|ABP67563.1| GMP synthase (glutamine-hydrolyzing) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 511

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ K   + +VV A+SGGVDSSV A L+ +     IG  L          RKG   A + 
Sbjct: 208 EIRKIVGNQKVVCALSGGVDSSVAAVLVHKA----IGKNLFCIFVDHGLLRKGE--AEEV 261

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           +   +      +++    D +ERF  A   VI P       GE                 
Sbjct: 262 IKTFKG---QFDMNVIKVDAKERFLKALCGVIDPERKRKIIGEEF-----------IRVF 307

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCD 187
                +LG    L  G        V + G  +    +           +    +  +   
Sbjct: 308 EEEASKLGDVKFLVQG---TIYPDVVESGVGKAATIKSHHN-------VGGLPEHIKFER 357

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL ++ K+ VR +  E+G+ 
Sbjct: 358 IIEPLRELFKDEVRRVGVELGIP 380


>gi|57640301|ref|YP_182779.1| hypothetical protein TK0366 [Thermococcus kodakarensis KOD1]
 gi|57158625|dbj|BAD84555.1| ThiI-related protein [Thermococcus kodakarensis KOD1]
          Length = 191

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 34/197 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +S G+DS V   L+ R G ++  +  +    + + K + +    + +    ++ 
Sbjct: 1   MKAVALLSSGIDSPVAIYLMLRRGVEITPIHFR----QDSIKEEKASEIVEILKRYGKLS 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D I     + ++ E      +  F      G+    CV C + +       +  ++GA  
Sbjct: 57  DPI-----IVNFSEEH----VPAFEKLRELGKIKYTCVLC-KWLMLRKACRIGHEIGASA 106

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +        D                               +  PL  + KE +
Sbjct: 107 IITGDSLGQVASQTLDNLMV-------------VSTASDLP------ILRPLIGLDKEEI 147

Query: 201 RDLAREMG-LDIADKSD 216
             +A+E+G  +I+ + +
Sbjct: 148 VRIAKEIGTFEISSRKE 164


>gi|283465236|gb|ADB23101.1| GMP synthase [Rhodopirellula sp. CS109]
          Length = 240

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 141 IPKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 172


>gi|160936182|ref|ZP_02083555.1| hypothetical protein CLOBOL_01078 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440992|gb|EDP18716.1| hypothetical protein CLOBOL_01078 [Clostridium bolteae ATCC
           BAA-613]
          Length = 513

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 29/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   + +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G       
Sbjct: 209 LREKIGNGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAVF 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             +        +++    + +ERF   +         A       +     ++       
Sbjct: 266 GPEGA-----YDLNFIRVNAQERFYARLKG--VEEPEAKRK----IIGEEFIRV--FEEE 312

Query: 133 TRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRF 190
            +++GA D L  G        V + G  +  + +           +    +     +L  
Sbjct: 313 AKKIGAVDYLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKELVE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR    E+G+ 
Sbjct: 363 PLRLLFKDEVRKAGLELGIP 382


>gi|160934354|ref|ZP_02081741.1| hypothetical protein CLOLEP_03225 [Clostridium leptum DSM 753]
 gi|156867027|gb|EDO60399.1| hypothetical protein CLOLEP_03225 [Clostridium leptum DSM 753]
          Length = 515

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 37/215 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
           V+S   +     L +   D +V+ A+SGGVDSSV A L+ +  G  +  +     +    
Sbjct: 201 VMSSFVKDTIQSLKEKIGDKKVLCALSGGVDSSVAALLVHKAVGKQLTCIF---VDHGLL 257

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPC 117
            K +G                  +++    + ++RF +    V  P       GE     
Sbjct: 258 RKDEGDQVETVFR-------KQFDMNLIRVNAKDRFLSKLAGVSEPEKKRKIIGEEF--- 307

Query: 118 VDCNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
                          +++LG  + L  G        V + G     + +           
Sbjct: 308 --------IRVFEEESQKLGKIEFLCQG---TIYPDVVESGVGEAAVIKSHHN------- 349

Query: 177 LFATTQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +      +  PL D+ K+ VR    E+G+ 
Sbjct: 350 VGGLPEDVGFEGIIEPLRDLFKDEVRQAGLELGIP 384


>gi|303235677|ref|ZP_07322284.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN]
 gi|302484124|gb|EFL47112.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN]
          Length = 461

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 32/134 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D + +V +SGG DS V   L LK  GY++           + S R    C        +
Sbjct: 17  EDGKYIVGLSGGADS-VALLLVLKHLGYNIEAAHCNFNLRGEESNRDEEYC--------K 67

Query: 78  RVCDTINVSHYVFDY-----EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++C+ +NV  ++  +      E  +        S   A  T          +++    ++
Sbjct: 68  KLCEKLNVPFHLIHFDTILYAELHK-------VSIEMAART----------LRYGYFENL 110

Query: 133 TRQLGADVLATGHY 146
            R + AD +   H+
Sbjct: 111 RRDIQADAICIAHH 124


>gi|147676842|ref|YP_001211057.1| argininosuccinate synthase [Pelotomaculum thermopropionicum SI]
 gi|189046396|sp|A5D510|ASSY_PELTS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|146272939|dbj|BAF58688.1| argininosuccinate synthase [Pelotomaculum thermopropionicum SI]
          Length = 401

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV    LK + GY+VI       ++      + +    + +       
Sbjct: 3   KVVLAYSGGLDTSVAIPWLKENYGYEVIA-----MSADLGQGEELAPLREKAIKSGAS-- 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D    F    I P           Y  G +        R +    L+ + 
Sbjct: 56  -----KIYIEDVRREFVEDYIFPTLKAGAVYEGKYLLGTSMA------RPLIAKKLVEIA 104

Query: 134 RQLGADVLATG 144
           R+ GA+ +A G
Sbjct: 105 RKEGAEAVAHG 115


>gi|293375997|ref|ZP_06622255.1| PP-loop family protein [Turicibacter sanguinis PC909]
 gi|325842257|ref|ZP_08167649.1| PP-loop family protein [Turicibacter sp. HGF1]
 gi|292645374|gb|EFF63426.1| PP-loop family protein [Turicibacter sanguinis PC909]
 gi|325489663|gb|EGC92023.1| PP-loop family protein [Turicibacter sp. HGF1]
          Length = 244

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 26/141 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS---SVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGS 66
           D     +  RV V +SGG DS        L ++     ++++G+TL+L            
Sbjct: 14  DFSLIQEGDRVAVGVSGGKDSMALLYALHLYQKFAPVKFELVGITLKL------------ 61

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
              G D       C    + +++ D        V        A     +PC  C++  K 
Sbjct: 62  GFPGMDFNPVVEFCKEHGIEYHLVD------TQVYE-ILQLNADENGKIPCSLCSKFKK- 113

Query: 127 SDLLSVTRQLGADVLATGHYI 147
           + L+    +LG + ++  H+ 
Sbjct: 114 AILIKKGVELGCNKISMAHHA 134


>gi|116253706|ref|YP_769544.1| tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258354|emb|CAK09456.1| putative tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 485

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 33/221 (14%)

Query: 4   SEATRLNSLDLDKNPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKAS 61
           + + +L  L    + +   R++ A+SGG DS+ +  LL      V     L++       
Sbjct: 5   AASPQLTILQFLTSLQSPARILAAISGGSDSTGLLLLLDEA---VKAAPHLKISLCAATV 61

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-C 120
                  +  +  D   +C ++ + H    +E                 G+ P   +   
Sbjct: 62  DHALRAGSADEARDVAALCASLGIPHTTMIWE-----------------GDKPKTGIMAA 104

Query: 121 NRTVKFSDLLSVTRQLGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            R  ++  L +      AD++ TGH +   R  +   G R   +   +         LF 
Sbjct: 105 AREARYGLLETAAESFEADLIVTGHTFDDQRETLQMRGMRTEQISTGIADA-----VLFN 159

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDI 220
                L  L F      +  +R   +E G+   D   ++DI
Sbjct: 160 RRFWILRPLLF----SSRADIRAFLKERGVPWIDDPSNEDI 196


>gi|325696489|gb|EGD38379.1| GMP synthase [Streptococcus sanguinis SK160]
 gi|327462221|gb|EGF08548.1| GMP synthase [Streptococcus sanguinis SK1]
          Length = 520

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +I +            RKG      D+     
Sbjct: 225 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGLLRKGEADQVMDM----- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     ++    D  +RF + +                 V       F D    ++    
Sbjct: 275 LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKDV 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +  G D  +     +           +    +    +L  PL  + K+
Sbjct: 328 KFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFELIEPLNTLYKD 377

Query: 199 SVRDLAREMGLD 210
            VR L  E+G+ 
Sbjct: 378 EVRALGTELGMP 389


>gi|301162199|emb|CBW21744.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 249

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  +V+V +SGG DS  +  LL +  +       V+ V   ++                 
Sbjct: 30  EGDKVLVGLSGGKDSLALVELLGKRSHIFKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    R   +   V   V++           P   +  +     PC     NR      
Sbjct: 78  SDWDYLREHAEKNGVPLVVYETS-------FDPSTDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEQGCNKIALGHH 140


>gi|265762633|ref|ZP_06091201.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_16]
 gi|263255241|gb|EEZ26587.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_16]
          Length = 249

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  +V+V +SGG DS  +  LL +  +       V+ V   ++                 
Sbjct: 30  EGDKVLVGLSGGKDSLALVELLGKRSHIFKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    R   +   V   V++           P   +  +     PC     NR      
Sbjct: 78  SDWDYLREHAEKNGVPLVVYETS-------FDPSTDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEQGCNKIALGHH 140


>gi|256832349|ref|YP_003161076.1| argininosuccinate synthase [Jonesia denitrificans DSM 20603]
 gi|256685880|gb|ACV08773.1| argininosuccinate synthase [Jonesia denitrificans DSM 20603]
          Length = 413

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 63/200 (31%), Gaps = 39/200 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    +    G +VI V                   G+D+   R+  
Sbjct: 4   RIVLAYSGGLDTSVAIGWIAEATGAEVIAV------------AVDVGQGGEDLEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V  Y+ D  + F     +P   + A      P V   +R      L+   RQ  A
Sbjct: 52  LDCGAVEAYIADARDEFAGEYCMPALQANALYLDRYPLVSALSRPTIVKHLVRAARQFDA 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
             +A G                   C       DQ  F    T          P+ D  +
Sbjct: 112 TTVAHG-------------------CTGK--GNDQVRFEVGITSLAPDLKCLAPVRDLAL 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            ++     A +  L IA   
Sbjct: 151 TRDKAIAYAEKNSLPIATTK 170


>gi|163788006|ref|ZP_02182452.1| GMP synthetase (glutamine-hydrolyzing) [Flavobacteriales bacterium
           ALC-1]
 gi|159876326|gb|EDP70384.1| GMP synthetase (glutamine-hydrolyzing) [Flavobacteriales bacterium
           ALC-1]
          Length = 511

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           DL     + +VV+ +SGGVDSSV A LL + 
Sbjct: 207 DLKTQLGNDKVVLGLSGGVDSSVAAMLLHKA 237


>gi|53712471|ref|YP_098463.1| hypothetical protein BF1179 [Bacteroides fragilis YCH46]
 gi|60680672|ref|YP_210816.1| hypothetical protein BF1146 [Bacteroides fragilis NCTC 9343]
 gi|253563497|ref|ZP_04840954.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52215336|dbj|BAD47929.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60492106|emb|CAH06869.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251947273|gb|EES87555.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 249

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  +V+V +SGG DS  +  LL +  +       V+ V   ++                 
Sbjct: 30  EGDKVLVGLSGGKDSLALVELLGKRSHIFKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    R   +   V   V++           P   +  +     PC     NR      
Sbjct: 78  SDWDYLREHAEKNGVPLVVYETS-------FDPSTDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEQGCNKIALGHH 140


>gi|327460370|gb|EGF06707.1| GMP synthase [Streptococcus sanguinis SK1057]
          Length = 520

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +I +            RKG      D+     
Sbjct: 225 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGLLRKGEADQVMDM----- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     ++    D  +RF + +                 V       F D    ++    
Sbjct: 275 LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKDV 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +  G D  +     +           +    +    +L  PL  + K+
Sbjct: 328 KFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFELIEPLNTLYKD 377

Query: 199 SVRDLAREMGLD 210
            VR L  E+G+ 
Sbjct: 378 EVRALGTELGMP 389


>gi|307705158|ref|ZP_07642033.1| GMP synthase [Streptococcus mitis SK597]
 gi|307621297|gb|EFO00359.1| GMP synthase [Streptococcus mitis SK597]
          Length = 513

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 201 MDNFIDMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 255

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 256 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 309

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++    + LA G      +  G D  +     +           +    
Sbjct: 310 ----FDD--EASKLKDVNFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 353

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 354 EDMQFELIEPLNTLYKDEVRALGTELGMP 382


>gi|225011777|ref|ZP_03702215.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A]
 gi|225004280|gb|EEG42252.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A]
          Length = 434

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 36/191 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             ++++A SGG+DSSV+A LL +    + V     QL      S          D    +
Sbjct: 18  GKQILLAHSGGLDSSVMADLLVKAQVPFSVAHCNFQLRGEESNS----------DAGLVK 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C   ++  +  ++               Y         +   R +++S    +     
Sbjct: 68  AWCFDNSIPFFSVEFATL-----------EYKKYHKKSTQLAA-RDLRYSWFDEIMDGYA 115

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L T H++  +L        R             +        Q+   L  PL  + K
Sbjct: 116 FDFLVTAHHLNDQLETFLINTTRG------------TGVSGLLGIQEREHLLRPLRSIPK 163

Query: 198 ESVRDLAREMG 208
           + +   A+E G
Sbjct: 164 KELIQYAKEHG 174


>gi|87311239|ref|ZP_01093361.1| hypothetical protein DSM3645_26971 [Blastopirellula marina DSM
           3645]
 gi|87285979|gb|EAQ77891.1| hypothetical protein DSM3645_26971 [Blastopirellula marina DSM
           3645]
          Length = 329

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++++    R V  +SG +D +V AAL++  G  V G+      S  A             
Sbjct: 1   MNESRVMTRSVALLSGDLDGAVAAALIQTQGVQVFGLAFATQFSPVADA----------- 49

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             ARR  D + +   V          +I      Y  G    PC DC R    +  +   
Sbjct: 50  --ARRSADQLQIPLRVVQPSPTEYLQLIARPRFGYGKG--ANPCGDC-RLAMLAAAVEYL 104

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIM 163
            +L A  + TG  +  ++     G++R  +
Sbjct: 105 TELEAQFVVTGEVLGQKMM----GQKRSHL 130


>gi|83950756|ref|ZP_00959489.1| argininosuccinate synthase [Roseovarius nubinhibens ISM]
 gi|83838655|gb|EAP77951.1| argininosuccinate synthase [Roseovarius nubinhibens ISM]
          Length = 408

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELDPARK 50

Query: 79  VCDTINV---SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
             + + +   + Y+ D  E F    + P           Y  G +    +   R      
Sbjct: 51  KAELLGINPDNIYIEDIREEFVRDFVFPMFRANALYEGQYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  + GAD +A G
Sbjct: 105 LVEIAAETGADAVAHG 120


>gi|326403273|ref|YP_004283354.1| argininosuccinate synthase [Acidiphilium multivorum AIU301]
 gi|325050134|dbj|BAJ80472.1| argininosuccinate synthase [Acidiphilium multivorum AIU301]
          Length = 409

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  ARR 
Sbjct: 7   KKVVLAYSGGLDTSVILRWLQTERGAEVVTFT-------------ADLGQGEELEPARRK 53

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   V      D  E F    + P           Y  G +    +   R +       
Sbjct: 54  AEMFGVKEIFVEDLRETFVKDFVFPMFRANALYEGQYLLGTSIARPLIAQRQI------E 107

Query: 132 VTRQLGADVLATG 144
           +   +GAD +A G
Sbjct: 108 IAEAVGADAVAHG 120


>gi|213966334|ref|ZP_03394516.1| argininosuccinate synthase [Corynebacterium amycolatum SK46]
 gi|213951040|gb|EEB62440.1| argininosuccinate synthase [Corynebacterium amycolatum SK46]
          Length = 399

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV++A SGG+D++V    LK   DG +V+ V     +       +      Q   DA  V
Sbjct: 4   RVILAYSGGLDTTVAIPYLKEMTDG-EVVAV-----SIDVGQGGEDMESVRQRALDAGAV 57

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D ++ F     +P   +        P V   +R +    +     + G 
Sbjct: 58  ------EAVVVDAKDEFAEEYCLPTIKANGLYMKQYPLVSALSRPLIVKHMAKAAEEFGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
             +A G                    +  D  R +  F           +  P  D    
Sbjct: 112 THVAHG-----------------CTGKGNDQVRFEVGFANTAPDL---KIIAPARDFAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++     A E GL I     S
Sbjct: 152 RDKAIAFAEEKGLPIEQSKSS 172


>gi|148259759|ref|YP_001233886.1| argininosuccinate synthase [Acidiphilium cryptum JF-5]
 gi|172047764|sp|A5FWI5|ASSY_ACICJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|146401440|gb|ABQ29967.1| argininosuccinate synthase [Acidiphilium cryptum JF-5]
          Length = 409

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  ARR 
Sbjct: 7   KKVVLAYSGGLDTSVILRWLQTERGAEVVTFT-------------ADLGQGEELEPARRK 53

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   V      D  E F    + P           Y  G +    +   R +       
Sbjct: 54  AEMFGVKEIFVEDLRETFVKDFVFPMFRANALYEGQYLLGTSIARPLIAQRQI------E 107

Query: 132 VTRQLGADVLATG 144
           +   +GAD +A G
Sbjct: 108 IAEAVGADAVAHG 120


>gi|319936217|ref|ZP_08010637.1| GMP synthase [Coprobacillus sp. 29_1]
 gi|319808791|gb|EFW05324.1| GMP synthase [Coprobacillus sp. 29_1]
          Length = 514

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 34/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         +   
Sbjct: 215 NGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVEAIFGPNG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    + ++R+               ET    +     ++        +++G 
Sbjct: 270 ---NYDLNFIRVNAQQRYYEK-----LKGIEDPETK-RKIIGEEFIRV--FEEEAQKIGT 318

Query: 138 ADVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            D L  G      +  G  G+    +       +    D              ++  PL 
Sbjct: 319 VDFLVQGTIYPDVVESGLGGESAVIKSHHNVGGLPDCVD------------FKEIIEPLR 366

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR +  E+G+ 
Sbjct: 367 DLFKDEVRKVGLELGIP 383


>gi|150401423|ref|YP_001325189.1| ExsB family protein [Methanococcus aeolicus Nankai-3]
 gi|150014126|gb|ABR56577.1| ExsB family protein [Methanococcus aeolicus Nankai-3]
          Length = 203

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+  V  SGG DSS+ A +LK  GYDV  VT+                       A+   
Sbjct: 1  MKACVLFSGGKDSSLCAIILKNLGYDVELVTINF-------------GVLDSYKYAQETA 47

Query: 81 DTINVSHYVFDYEE 94
            +N+ H V   ++
Sbjct: 48 KILNLPHKVICLKD 61


>gi|126297761|ref|XP_001364691.1| PREDICTED: similar to Prmd14 [Monodelphis domestica]
          Length = 412

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + R
Sbjct: 60  -----FIEDISKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARKQ-------VEIAR 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|269860665|ref|XP_002650052.1| translation initiation inhibitor [Enterocytozoon bieneusi H348]
 gi|220066539|gb|EED44017.1| translation initiation inhibitor [Enterocytozoon bieneusi H348]
          Length = 241

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++   +SGG DS      +K  GY+ V GV +  Y   + S        GQ++   + +
Sbjct: 1   MKIAALISGGKDSIYTLCKMKDQGYEIVCGVYM--YGENENSDSFMYQTIGQNII--KLI 56

Query: 80  CDTINVSH-------YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
             ++ +            +   ++           Y A +T      CN
Sbjct: 57  EQSLEIPFIYKKTRCITLNTNLKYSETKYDEVEDLYDALKTAQKKYQCN 105


>gi|110816273|sp|Q55468|QUEC_SYNY3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
          Length = 232

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+ VAA+ KR+GY VI ++   Y  R            +++  A  +   +
Sbjct: 6  VVLLSGGLDSATVAAIAKREGYRVIALSF-NYGQR----------HDRELRAAADIVQAL 54

Query: 84 NVSHY 88
           +  +
Sbjct: 55 GIPEH 59


>gi|109111754|ref|XP_001095864.1| PREDICTED: argininosuccinate synthase-like isoform 4 [Macaca
           mulatta]
          Length = 412

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASS-------YAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P   S       Y  G +   PC+ C +       + + +
Sbjct: 60  -----FIEDVSREFVQEFICPAIQSSALYEDGYLLGTSLARPCIACKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|33593602|ref|NP_881246.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bordetella pertussis Tohama I]
 gi|44887942|sp|Q7VVM4|GUAA_BORPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33572958|emb|CAE42900.1| GMP synthase [glutamine-hydrolyzing] [Bordetella pertussis Tohama
           I]
          Length = 530

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G               +
Sbjct: 228 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLDEGKQVMQTFT-------E 277

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            + V     D   +F                T +   +  R +   + + V      +L 
Sbjct: 278 NMGVKIVHVDATSQFMGK------------LTGVADPEAKRKIIGREFVEVFQDEAGKLQ 325

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G      +        +    +           +          L  PL ++ 
Sbjct: 326 GAKWLAQGTIYPDVIESAGAKTGKATSIKSHHN-------VGGLPDTLNLQLLEPLRELF 378

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 379 KDEVRELGVALGLP 392


>gi|186682257|ref|YP_001865453.1| asparagine synthase [Nostoc punctiforme PCC 73102]
 gi|186464709|gb|ACC80510.1| asparagine synthase [Nostoc punctiforme PCC 73102]
          Length = 612

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD  V V +SGG+DSSVVAALL + G  V   TL   +               +   + +
Sbjct: 243 KDEPVGVFLSGGLDSSVVAALLVQAGVKVRAYTLDFGD-----------VGIPEYPYSEQ 291

Query: 79  VCDTINVSHYVF 90
           V   + +     
Sbjct: 292 VAQFLKIPLIKV 303


>gi|83719399|ref|YP_442582.1| GMP synthase [Burkholderia thailandensis E264]
 gi|83653224|gb|ABC37287.1| GMP synthase [Burkholderia thailandensis E264]
          Length = 599

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 285 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 342

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 343 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 378

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 379 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 431

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 432 RDLFKDEVRELGVALGLP 449


>gi|16332015|ref|NP_442743.1| ExsB protein [Synechocystis sp. PCC 6803]
 gi|1001327|dbj|BAA10814.1| ExsB protein [Synechocystis sp. PCC 6803]
          Length = 271

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+ VAA+ KR+GY VI ++   Y  R            +++  A  +   +
Sbjct: 45 VVLLSGGLDSATVAAIAKREGYRVIALSF-NYGQR----------HDRELRAAADIVQAL 93

Query: 84 NVSHY 88
           +  +
Sbjct: 94 GIPEH 98


>gi|67538792|ref|XP_663170.1| hypothetical protein AN5566.2 [Aspergillus nidulans FGSC A4]
 gi|74595047|sp|Q5B1L4|GUAA_EMENI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|40743081|gb|EAA62271.1| hypothetical protein AN5566.2 [Aspergillus nidulans FGSC A4]
 gi|259484974|tpe|CBF81652.1| TPA: GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)(Glutamine
           amidotransferase)(GMP synthetase)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B1L4] [Aspergillus
           nidulans FGSC A4]
          Length = 533

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 53/210 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V+ A+SGGVDS+V A L+       IG      +   A      C    +    + V
Sbjct: 227 DGQVLGAVSGGVDSTVAAKLMTEA----IG------DRFHAVLVDNGCMRLNECEKVQEV 276

Query: 80  C-DTINVSHYVFDYEERFRN-----------------AVIVPFASSYAAGETPLPCVDCN 121
             + + ++  V D  E+F                     I  F             ++  
Sbjct: 277 LQEQLGINLTVVDAGEQFLAGLKGVHDPEQKRKFIGGKFIDVFEDEARK-------IEAK 329

Query: 122 RTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              K    L  T      + ++     ++     + G     + R   L           
Sbjct: 330 SNGKVEWFLQGTLYPDVIESISFKGPSQTIKTHHNVGGIAERLMRGHGL----------- 378

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                  L  PL ++ K+ VR+L R++G+ 
Sbjct: 379 ------KLIEPLRELFKDEVRELGRQLGIS 402


>gi|304383964|ref|ZP_07366420.1| GMP synthase [Prevotella marshii DSM 16973]
 gi|304334856|gb|EFM01130.1| GMP synthase [Prevotella marshii DSM 16973]
          Length = 514

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL R  G ++  +                     
Sbjct: 206 ELKQQIGNDRVILGLSGGVDSSVCATLLNRAIGKNLTCIF--------VDHGMLRKNEYA 257

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V +A R    + ++    D  ++F              G T     +  R +   D + 
Sbjct: 258 KVMEAYR---GLGLNVVGIDASKKFFTD---------LRGVT---DPEEKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR + +E+G+ 
Sbjct: 349 EMKLRLCEPLQWLFKDEVRRVGQELGMP 376


>gi|289615705|emb|CBI57446.1| unnamed protein product [Sordaria macrospora]
          Length = 417

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L   GY V+   L      +                 R 
Sbjct: 4   SKGRVCLAYSGGLDTSTILCWLIEQGYTVV-CFLANVGQEENWDE------------VRA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               +      + D ++ F + ++       A  E          R +     + V  + 
Sbjct: 51  KAKKLGAEEMVILDLQQEFVDQIVFRAIQCNAIYEDRYLLGTSLARPIIARAQVRVAEEY 110

Query: 137 GADVLATG 144
             + ++ G
Sbjct: 111 NCEFVSHG 118


>gi|269796118|ref|YP_003315573.1| GMP synthase [Sanguibacter keddieii DSM 10542]
 gi|269098303|gb|ACZ22739.1| GMP synthase (glutamine-hydrolyzing) [Sanguibacter keddieii DSM
           10542]
          Length = 526

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDSSV AAL+++  G  +  V     +     + +        V     
Sbjct: 221 DARVICGLSGGVDSSVAAALVQKAVGSQLTCVF---VDHGLLREGEAEQVEVDFV----- 272

Query: 79  VCDTINVSHYVFDYEERF 96
             ++  V   V D  ERF
Sbjct: 273 --ESTGVKLKVVDARERF 288


>gi|302871771|ref|YP_003840407.1| GMP synthase, large subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302574630|gb|ADL42421.1| GMP synthase, large subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 511

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 47/202 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV A+SGGVDSSV A L+ +     IG  L          RKG         +   V
Sbjct: 215 NQKVVCALSGGVDSSVAAVLVHKA----IGKNLYCIFVDHGLLRKGE------AEEVMSV 264

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVK----FSDLL 130
                       + ++F   VI       F S+      P       R +          
Sbjct: 265 ------------FRDKFDMNVIKVDAKDRFLSALRGVIDPEE----KRKIIGREFIRVFE 308

Query: 131 SVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDL 188
               +LG    L  G        V + G  +    +           +    ++ +   +
Sbjct: 309 EEAEKLGDIKFLVQG---TIYPDVVESGVGKAATIKSHHN-------VGGLPEKIKFEKI 358

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+G+ 
Sbjct: 359 IEPLRELFKDEVRRVGIELGIP 380


>gi|114571455|ref|YP_758135.1| argininosuccinate synthase [Maricaulis maris MCS10]
 gi|119361286|sp|Q0AKJ6|ASSY_MARMM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|114341917|gb|ABI67197.1| argininosuccinate synthase [Maricaulis maris MCS10]
          Length = 410

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 68/206 (33%), Gaps = 47/206 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G+++  ARR  
Sbjct: 8   KKVVLAYSGGLDTSVILKWLQDA-YDAEVVTF-----------TADLGQGEELEPARRKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
           +   V   ++ D  E F    + P   + A  E          R +    L+ +    GA
Sbjct: 56  EAAGVSEIFIEDLREEFVRDFVYPMVRANAVYEGLYLLGTSIARPLIAKRLVEIAHATGA 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFP---- 191
           D +A G                           DQ  F   ++A        +  P    
Sbjct: 116 DAVAHG---------------------ATGKGNDQVRFELGVYALDPD--LRVIAPWREW 152

Query: 192 -LGDMKKESVRDLAREMGLDIADKSD 216
            L    K  +   A E G+++A    
Sbjct: 153 DLNSRTK--LIAYAEENGIEVAKDKR 176


>gi|222529421|ref|YP_002573303.1| GMP synthase [Caldicellulosiruptor bescii DSM 6725]
 gi|259647755|sp|B9MS76|GUAA_ANATD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222456268|gb|ACM60530.1| GMP synthase, large subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 511

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 37/197 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV A+SGGVDSSV A L+ +     IG  L          RKG       V+     
Sbjct: 215 NQKVVCALSGGVDSSVAAVLVHKA----IGKNLYCIFVDHGLLRKGEAEEVVSVFK---- 266

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            D  +++    D ++RF  A           G T     +  R +              +
Sbjct: 267 -DKFDMNVIKVDAKDRFLEA---------LKGVT---DPEEKRKIIGREFIRVFEEEAEK 313

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLG 193
           LG    L  G        V + G  +    +           +    ++ +   +  PL 
Sbjct: 314 LGDIKFLVQG---TIYPDVVESGVGKAATIKSHHN-------VGGLPEKIKFKQIIEPLR 363

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR +  E+G+ 
Sbjct: 364 DLFKDEVRRVGIELGIP 380


>gi|182419326|ref|ZP_02950578.1| GMP synthase [Clostridium butyricum 5521]
 gi|237666785|ref|ZP_04526770.1| GMP synthase (glutamine-hydrolyzing) [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376657|gb|EDT74229.1| GMP synthase [Clostridium butyricum 5521]
 gi|237657984|gb|EEP55539.1| GMP synthase (glutamine-hydrolyzing) [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 513

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + + + A+SGGVDSSV A LL +  G  +  V     +     K +G         +   
Sbjct: 215 NGKALCALSGGVDSSVAAVLLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAIFGPNG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                +++    + +ERF             AG   +   +  R +             +
Sbjct: 270 ---NYDLNFIRVNAQERFYEK---------LAG---VEDPETKRKIIGEEFIRVFEEEAK 314

Query: 135 QLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPL 192
           ++GA D L  G        V + G  +  + +           +          ++  PL
Sbjct: 315 KIGAVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPDYVDFKEIIEPL 364

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR    E+G+ 
Sbjct: 365 RLLFKDEVRKAGLELGIP 382


>gi|322374426|ref|ZP_08048940.1| GMP synthase [Streptococcus sp. C300]
 gi|321279926|gb|EFX56965.1| GMP synthase [Streptococcus sp. C300]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADASKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|254490060|ref|ZP_05103253.1| ExsB family [Methylophaga thiooxidans DMS010]
 gi|224464724|gb|EEF80980.1| ExsB family [Methylophaga thiooxydans DMS010]
          Length = 525

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++     ++G               +
Sbjct: 230 VILGLSGGVDSSVVAALLHKAIGEQLTCVF---VDNGLLRYKEGDQVMATF-------AE 279

Query: 82  TINVSHYVFDYEERFRNA 99
            + V     D E+RF +A
Sbjct: 280 HMGVKVIRIDAEQRFLDA 297


>gi|134046496|ref|YP_001097981.1| exsB protein [Methanococcus maripaludis C5]
 gi|167016435|sp|A4FZY3|QUEC_METM5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|132664121|gb|ABO35767.1| exsB protein [Methanococcus maripaludis C5]
          Length = 233

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 37/204 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+V + + K + YD+  VT             G     Q++  A ++ 
Sbjct: 1   MKAICVLSGGLDSAVTSLVAKSENYDITTVTF----------NYGQMALNQEIKSAEKIS 50

Query: 81  DTINVSHYVFD--YEERFRN------AVIVP---FASSYAAGETPLPCVD--CNRTVKFS 127
           + +N  H+V D  + + F         +  P       +   E  +  V       + FS
Sbjct: 51  EILNADHHVIDINFVKEFSKSGLNTGNIPEPEKEDLDDFEKSEKTMKAVWVPARNMIMFS 110

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   + A+ + +G   R       D     I             F  +     L  
Sbjct: 111 IASGFAEGIDAEKIFSG-LNREEGVTFPDNTPEFI-----------ERFNKSLEYGTLNK 158

Query: 188 LRF--PLGDMKKESVRDLAREMGL 209
           ++   PL ++ K  +  L +E+ L
Sbjct: 159 VKMVAPLYELNKPEIAKLGKELEL 182


>gi|86136778|ref|ZP_01055356.1| argininosuccinate synthase [Roseobacter sp. MED193]
 gi|85826102|gb|EAQ46299.1| argininosuccinate synthase [Roseobacter sp. MED193]
          Length = 408

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     Y+ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKPENIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD +A G
Sbjct: 105 LVEIAEATGADAVAHG 120


>gi|225868533|ref|YP_002744481.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           zooepidemicus]
 gi|259647689|sp|C0MFC7|GUAA_STRS7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225701809|emb|CAW99237.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           zooepidemicus]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + K   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRKTVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF +           AG   +   + 
Sbjct: 264 RKNEGDQVME-------MLGGRFGLNIIRVDASKRFLD---------LLAG---VEDPEK 304

Query: 121 NRTVKFSDLL----SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +  ++ +        +L G D LA G        + + G       +          
Sbjct: 305 KRKIIGNEFVYVFDDEASKLEGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 355

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 -VGGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|94990542|ref|YP_598642.1| GMP synthase [Streptococcus pyogenes MGAS10270]
 gi|226739750|sp|Q1JGP6|GUAA_STRPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94544050|gb|ABF34098.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS10270]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEITKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|91200981|emb|CAJ74038.1| similar to NAD synthase [Candidatus Kuenenia stuttgartiensis]
          Length = 547

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGG+DS+V AAL     G + V+G+ +           +GS      V DA ++
Sbjct: 291 KVIIGLSGGIDSAVTAALAVEALGSENVMGIIM-----PSQFSSQGS------VDDAVQL 339

Query: 80  CDTINVSHYVFDYEERF 96
              + + + +F  ++ F
Sbjct: 340 SKNLAIDYRIFPIKDLF 356


>gi|229821518|ref|YP_002883044.1| GMP synthase, large subunit [Beutenbergia cavernae DSM 12333]
 gi|229567431|gb|ACQ81282.1| GMP synthase, large subunit [Beutenbergia cavernae DSM 12333]
          Length = 515

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 25/195 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V     +       +      +D  DA  
Sbjct: 210 DARAICGLSGGVDSAVAAALVQRAIGDQLTCVF---VDHGLLRAGEAE-QVERDFVDAT- 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
                 V   V D  ERF  A+             G   +   +        DL++   +
Sbjct: 265 -----GVHLMVVDARERFLTALAGISDPEQKRKIIGREFIRVFEAAA----RDLVAQAGE 315

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GADV            V   G       +           +    +    +L  PL  +
Sbjct: 316 DGADVRFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLEFELVEPLRTL 368

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+G+ 
Sbjct: 369 FKDEVRAVGLELGVP 383


>gi|262202734|ref|YP_003273942.1| argininosuccinate synthase [Gordonia bronchialis DSM 43247]
 gi|262086081|gb|ACY22049.1| argininosuccinate synthase [Gordonia bronchialis DSM 43247]
          Length = 399

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V L L    +            D      V 
Sbjct: 4   RVVLAYSGGLDTSVAISWIQKETGKEVVAVALDLGQGGEDMDVVRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F +   +   +S A      P V   +R +    L++  R  G  
Sbjct: 61  --------VVDARDEFADDYCLGAITSNALYMDRYPLVSALSRPLIAKHLVTAARDHGGT 112

Query: 140 VLATG 144
           V+A G
Sbjct: 113 VVAHG 117


>gi|281355414|ref|ZP_06241908.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
 gi|281318294|gb|EFB02314.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
          Length = 513

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 67/193 (34%), Gaps = 33/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV--- 79
           V++ +SGGVDSSV AAL+ +     IG  L          RK          +A RV   
Sbjct: 218 VILGLSGGVDSSVAAALIHKA----IGKQLNCIFVNNGLLRK---------NEAERVRNL 264

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQLG 137
                ++     D  ERF   +                 +  N  V+ F D  +  +   
Sbjct: 265 FGRAFDMKLIYVDATERFLARLAG--VEEPEKKRK----IIGNEFVQVFDD--ASAQIEQ 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ LA G      +           M +           +    ++    L  PL  + K
Sbjct: 317 AEFLAQGTTYPDVIESVPIDGNPAAMIKSHHN-------VGGLPKEMKFQLLEPLSRLFK 369

Query: 198 ESVRDLAREMGLD 210
           + VR++ R++GL 
Sbjct: 370 DEVREVGRQLGLP 382


>gi|44887927|sp|P60502|GUAA_SPIKU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34849446|gb|AAP58945.1| GMP synthase [Spiroplasma kunkelii CR2-3x]
          Length = 512

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 50/201 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A+SGGVDSSV A LL +  G  +  +              G         D ++  +
Sbjct: 218 VVLALSGGVDSSVCAVLLHKAIGKQLTCIF----------VDTGLLRQNSGWNDLQKFQE 267

Query: 82  TINVSHYVFDYEERF------------RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              ++    + +ERF            +  +I                    + VK+   
Sbjct: 268 KFKLNIIKINAQERFLTALKGVTNPEEKRKIIGNLFIEI-----FNEEAIKIQNVKW--- 319

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                 LG   +     I S    G     +                +    +     L 
Sbjct: 320 ------LGQGTI-YPDVIESVSVKGPSATIKSHHN------------VGGLPKDLPFQLI 360

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR     +G+D
Sbjct: 361 EPLRELFKDEVRRTGEALGID 381


>gi|306822887|ref|ZP_07456263.1| GMP synthase [Bifidobacterium dentium ATCC 27679]
 gi|309801283|ref|ZP_07695412.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553519|gb|EFM41430.1| GMP synthase [Bifidobacterium dentium ATCC 27679]
 gi|308222172|gb|EFO78455.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 64/209 (30%), Gaps = 59/209 (28%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEAEQVRHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG--ETPLPCVDCNRTVK 125
               +     D  E F            +  +I   F  ++     +         + VK
Sbjct: 270 ---GIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGASGKEVK 326

Query: 126 F---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           F     L   V    G D  A      +   + DD K +                     
Sbjct: 327 FLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDIKFQ--------------------- 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 L  PL  + K+ VR +  E+GL 
Sbjct: 366 ------LVEPLRTLFKDEVRAIGTELGLP 388


>gi|251780998|ref|ZP_04823918.1| PP-loop domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085313|gb|EES51203.1| PP-loop domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 288

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A L   L++ G   ++V  + +                   +
Sbjct: 52  EGDKIGVAISGGKDSLLMAKLFQELQKHGQMNFEVEFIAM-----DPGYHPHIRQLLLDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+   +++    F   V+   A  Y       PC  C   ++   L + 
Sbjct: 107 -------CEYLNIPITIYE-SGIF--DVVDKMAKDY-------PCYLC-ARMRRGSLYNK 148

Query: 133 TRQLGADVLATGHY 146
            ++LG + LA GH+
Sbjct: 149 AQELGCNKLALGHH 162


>gi|188588612|ref|YP_001920117.1| PP-loop family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498893|gb|ACD52029.1| PP-loop family protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 288

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A L   L++ G   ++V  + +                   +
Sbjct: 52  EGDKIGVAISGGKDSLLMAKLFQELQKHGQMNFEVEFIAM-----DPGYHPHIRQLLLDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+   +++    F   V+   A  Y       PC  C   ++   L + 
Sbjct: 107 -------CEYLNIPITIYE-SGIF--DVVDKMAKDY-------PCYLC-ARMRRGSLYNK 148

Query: 133 TRQLGADVLATGHY 146
            ++LG + LA GH+
Sbjct: 149 AQELGCNKLALGHH 162


>gi|171743082|ref|ZP_02918889.1| hypothetical protein BIFDEN_02208 [Bifidobacterium dentium ATCC
           27678]
 gi|283455908|ref|YP_003360472.1| GMP synthase glutamine amidotransferase [Bifidobacterium dentium
           Bd1]
 gi|171278696|gb|EDT46357.1| hypothetical protein BIFDEN_02208 [Bifidobacterium dentium ATCC
           27678]
 gi|283102542|gb|ADB09648.1| GMP synthase glutamine amidotransferase [Bifidobacterium dentium
           Bd1]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 64/209 (30%), Gaps = 59/209 (28%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D  +A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEAEQVRHDFVEAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG--ETPLPCVDCNRTVK 125
               +     D  E F            +  +I   F  ++     +         + VK
Sbjct: 270 ---GIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGASGKEVK 326

Query: 126 F---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           F     L   V    G D  A      +   + DD K +                     
Sbjct: 327 FLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDIKFQ--------------------- 365

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 L  PL  + K+ VR +  E+GL 
Sbjct: 366 ------LVEPLRTLFKDEVRAIGTELGLP 388


>gi|148656258|ref|YP_001276463.1| GMP synthase [Roseiflexus sp. RS-1]
 gi|148568368|gb|ABQ90513.1| GMP synthase (glutamine-hydrolyzing) [Roseiflexus sp. RS-1]
          Length = 512

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 35/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV+ A+SGGVDS+V A ++ R  G  +  V +     R+    +      +  +    
Sbjct: 214 NGRVICALSGGVDSAVAALIVHRAIGDRLTCVFVDNGLLRQGEAEQVVATFREHFH---- 269

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTR 134
                 +     D  + F +A   V  P       GE            KF        R
Sbjct: 270 ------IPLIAVDAADEFLDALAGVADPEQKRKIIGE------------KFVRIFEREAR 311

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ GA  LA G      +      +++ +  +           +          L  PL 
Sbjct: 312 RIEGARFLAQGTLYPDVIESKAPDRQKGVTIKTHHN-------VGGLPADMQLTLVEPLR 364

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR     +GL 
Sbjct: 365 YLFKDEVRAAGLALGLP 381


>gi|21910381|ref|NP_664649.1| GMP synthase [Streptococcus pyogenes MGAS315]
 gi|28895957|ref|NP_802307.1| GMP synthase [Streptococcus pyogenes SSI-1]
 gi|25452983|sp|Q8K7E6|GUAA_STRP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21904578|gb|AAM79452.1| putative GMP synthase [Streptococcus pyogenes MGAS315]
 gi|28811207|dbj|BAC64140.1| putative GMP synthase [Streptococcus pyogenes SSI-1]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEITKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|312139868|ref|YP_004007204.1| argininosuccinate synthase argg [Rhodococcus equi 103S]
 gi|311889207|emb|CBH48521.1| argininosuccinate synthase ArgG [Rhodococcus equi 103S]
          Length = 399

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGKEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F +   +P   + A      P V   +R +    ++   R  G 
Sbjct: 52  LDCGAVESVVVDARDEFADEYCLPTIQANALYMDRYPLVSAISRPLIVKHIVEAARAHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            V++ G                    +  D  R +  F       +   +  P+ D    
Sbjct: 112 TVVSHG-----------------CTGKGNDQVRFEVGFGALAPDLE---VIAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENNIPINVTKRS 172


>gi|291561395|emb|CBL40194.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [butyrate-producing bacterium SS3/4]
          Length = 514

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           + +V+ A+SGGVDSSV A +L +  G  +  V      L+  N     +         D+
Sbjct: 215 NGKVLCALSGGVDSSVAAVMLAKAVGDQLTCVFVDHGLLR-KNEGDEVEEVFGPNGPYDL 273

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +                + ++RF + +                 +     ++        
Sbjct: 274 H------------FIRVNAQQRFYDKLAG--VEEPERKRK----IIGEEFIRV--FEEEA 313

Query: 134 RQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++GA D L  G      +  G  G+          + +               ++  PL
Sbjct: 314 KKIGAVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPL 365

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR    E+G+ 
Sbjct: 366 RDLFKDEVRKAGLELGIP 383


>gi|296127335|ref|YP_003634587.1| GMP synthase, large subunit [Brachyspira murdochii DSM 12563]
 gi|296019151|gb|ADG72388.1| GMP synthase, large subunit [Brachyspira murdochii DSM 12563]
          Length = 514

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V++ +SGGVDSSV A L+++     IG  L+         RK       +V+     
Sbjct: 217 DKNVILGLSGGVDSSVAAVLIEKA----IGKQLKCIFVNNGLLRKDEDKKVVEVFR---- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
            D  N+     D  +RF +           AG T     +  R +      S      ++
Sbjct: 269 -DNFNIDLIYVDASKRFLDK---------LAGVT---DPEQKRKIIGHEFVSVFNDEAKK 315

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +     LA G        +  D      +     + +   + +    +    +L  P  +
Sbjct: 316 IENVGFLAQG-------TLYPDVIESVSLRGSSAVIKSH-HNVGGLPKDMKFELLEPFRE 367

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+ L 
Sbjct: 368 LFKDEVREIGLELKLP 383


>gi|119468953|ref|ZP_01611978.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Alteromonadales bacterium TW-7]
 gi|119447605|gb|EAW28872.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Alteromonadales bacterium TW-7]
          Length = 525

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 227 DDEVILGLSGGVDSSVVAMLIHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 278

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKFSDLL 130
                  +   ++    D EE+F             AG++          +  +      
Sbjct: 279 -------NKFGLNIVKVDAEEQFLAD---------LAGKSDPEDKRKAIGHTFINV--FD 320

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L  A  L  G      +        +  + +           +          L 
Sbjct: 321 EQAKKLKNAKWLGQGTIYPDVIESAASATGKAHVIKSHHN-------VGGLPDDMKMGLV 373

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 374 EPLRELFKDEVRKIGLELGLP 394


>gi|15669670|ref|NP_248483.1| hypothetical protein MJ_1478 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501588|sp|Q58873|Y1478_METJA RecName: Full=CTU1/ATPBD3 family protein MJ1478
 gi|1592117|gb|AAB99482.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 303

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD +++VA+SGG D    A +LK+ GY++  +          S+          +   + 
Sbjct: 50  KDEKILVAVSGGKDGHAAAWVLKKLGYNIE-LFHINLGIEGFSEES--------LKAVKE 100

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQL 136
           + + + V  +V +        +          G+    C    R +  KF        + 
Sbjct: 101 LAEKLEVPLHVVNL-----KDITGKTMEDIR-GKKCSICGTTKRYLMNKFGY------EN 148

Query: 137 GADVLATGHYI 147
           G DV+ TGH +
Sbjct: 149 GFDVIVTGHNL 159


>gi|304386260|ref|ZP_07368593.1| GMP synthase [Pediococcus acidilactici DSM 20284]
 gi|304327617|gb|EFL94844.1| GMP synthase [Pediococcus acidilactici DSM 20284]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL +  G  ++ +            RKG          A++
Sbjct: 225 DRKVLLGLSGGVDSSVVGVLLNKAIGDQLVCIF-----VDHGLLRKGE---------AKQ 270

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V D++     ++    D ++RF + +                 +  N  +         +
Sbjct: 271 VMDSLEGKFGLNIIKVDAQDRFLSKLAGVTDPEQKRK------IIGNEFI--EVFNDEAQ 322

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G      +  G D  +     +           +    +    +L  PL 
Sbjct: 323 KLKGIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMHFELIEPLR 372

Query: 194 DMKKESVRDLAREMGLD 210
            + K+  RDL  ++G+ 
Sbjct: 373 TLFKDEARDLGEKLGMP 389


>gi|290580496|ref|YP_003484888.1| putative GMP synthase [Streptococcus mutans NN2025]
 gi|254997395|dbj|BAH87996.1| putative GMP synthase [Streptococcus mutans NN2025]
          Length = 533

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   + +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 221 MDSFIDMEIEKIREQVGNRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 276

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 V  
Sbjct: 277 RKGEGDQVME-------MLGGRFGLNIIRVDASKRFLDLLAGIDDPEKKRKIIGNEFVYV 329

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++Q G D LA G        V + G       +           +   
Sbjct: 330 -----FDD--EASKQKGVDFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGL 372

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 373 PEDMQFELIEPLNTLFKDEVRTLGTALGMP 402


>gi|154483751|ref|ZP_02026199.1| hypothetical protein EUBVEN_01455 [Eubacterium ventriosum ATCC
           27560]
 gi|149735242|gb|EDM51128.1| hypothetical protein EUBVEN_01455 [Eubacterium ventriosum ATCC
           27560]
          Length = 471

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 40/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         D   
Sbjct: 172 DGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVF---VDHGLLRKNEGDEVEAVFGPDG-- 226

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +++    + +ER+ +    V  P       GE                     ++
Sbjct: 227 ---PYDLNFIRVNAQERYYSKLAGVKEPEQKRKIIGEEF-----------IRVFEEEAKK 272

Query: 136 LGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +GA D L  G      +  G  G+    +       +    D              ++  
Sbjct: 273 IGAVDFLVQGTIYPDVVESGLGGESAVIKSHHNVGGLPDCVD------------FKEIIE 320

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL D+ K+ VR    EMG+ 
Sbjct: 321 PLRDLFKDEVRKAGLEMGIP 340


>gi|134045741|ref|YP_001097227.1| GMP synthase subunit B [Methanococcus maripaludis C5]
 gi|132663366|gb|ABO35012.1| GMP synthase (glutamine-hydrolyzing) [Methanococcus maripaludis C5]
          Length = 310

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   + + ++A+SGGVDS+V A L  K  G  ++ V            RK       
Sbjct: 14  EIRKQINNRKTIIALSGGVDSAVAAVLTDKAIGDKLLAVY-----VDTGLMRKNESEEIW 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            ++      + + ++  + + ++ F      VI P       G   +             
Sbjct: 69  KIFK-----EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLFIEV----------- 112

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V  + G +VL  G      +      K    +  P  +  D               +
Sbjct: 113 FEKVAEEQGEEVLVQGTIAPDWIESEGQIKTHHNIALPGGMVLD---------------V 157

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR LA  +GL 
Sbjct: 158 VEPLRELYKDEVRLLAVALGLP 179


>gi|167946028|ref|ZP_02533102.1| argininosuccinate synthase [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589130|gb|ABG77074.1| argininosuccinate synthase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 166

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G++V  AR   
Sbjct: 7   KKVVLAYSGGLDTSIIVKWLQDE-YQCEVVTF-----------TADIGQGEEVEPARAKA 54

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 55  EAAGIKEIYIEDLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEI 108

Query: 133 TRQLGADVLATG 144
            R+ GAD ++ G
Sbjct: 109 ARETGADAISHG 120


>gi|270290741|ref|ZP_06196965.1| GMP synthase [Pediococcus acidilactici 7_4]
 gi|270280801|gb|EFA26635.1| GMP synthase [Pediococcus acidilactici 7_4]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL +  G  ++ +            RKG          A++
Sbjct: 222 DRKVLLGLSGGVDSSVVGVLLNKAIGDQLVCIF-----VDHGLLRKGE---------AKQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V D++     ++    D ++RF + +                 +  N  +         +
Sbjct: 268 VMDSLEGKFGLNIIKVDAQDRFLSKLAGVTDPEQKRK------IIGNEFI--EVFNDEAQ 319

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G      +  G D  +     +           +    +    +L  PL 
Sbjct: 320 KLKGIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMHFELIEPLR 369

Query: 194 DMKKESVRDLAREMGLD 210
            + K+  RDL  ++G+ 
Sbjct: 370 TLFKDEARDLGEKLGMP 386


>gi|262306045|gb|ACY45615.1| gln amidotransferase [Euperipatoides rowelli]
          Length = 197

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           KD +V++ +SGGVDS+V AALL +   +  VI V +     RK    +            
Sbjct: 42  KDNKVLMLVSGGVDSTVCAALLHKALKEDQVIAVHIDNGFMRKKESEQ-----------V 90

Query: 77  RRVCDTINVSHYVFDYEERFRNA 99
            +  + I +   V +    F NA
Sbjct: 91  EKSLNKIGLKLKVVNGAHSFYNA 113


>gi|254671868|emb|CBA04090.1| cell cycle protein [Neisseria meningitidis alpha275]
          Length = 436

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|251782367|ref|YP_002996669.1| GMP synthase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390996|dbj|BAH81455.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   + +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIEMEIAKIRETVGNRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +              +   + 
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLAD------------VEDPEK 304

Query: 121 NRTVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +  ++ +       ++  G D LA G        + + G       +          
Sbjct: 305 KRKIIGNEFVYVFDDEASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 355

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 -VGGLPEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|323127250|gb|ADX24547.1| GMP synthase [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   + +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIEMEIAKIRETVGNRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +              +   + 
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLAD------------VEDPEK 304

Query: 121 NRTVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +  ++ +       ++  G D LA G        + + G       +          
Sbjct: 305 KRKIIGNEFVYVFDDEASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 355

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 -VGGLPEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|300778731|ref|ZP_07088589.1| GMP synthase (glutamine-hydrolyzing) [Chryseobacterium gleum ATCC
           35910]
 gi|300504241|gb|EFK35381.1| GMP synthase (glutamine-hydrolyzing) [Chryseobacterium gleum ATCC
           35910]
          Length = 509

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 38/205 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           ++ +     +V++ +SGGVDSSV A L+ +     IG  +T    ++    K +G     
Sbjct: 205 EIREKVGGNKVILGLSGGVDSSVAAVLIHKA----IGDQLTCIFVDTGLLRKDEG----- 255

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                 ++V D     H+  + +          F S  A  + P       R +  ++ +
Sbjct: 256 ------KKVMDQYG-EHFHMNIKMVDAK---ERFLSKLAGVDDPE----AKRKIIGNEFI 301

Query: 131 SVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            V  +      GA  LA G  I   +           + +           +    +   
Sbjct: 302 HVFDEESHKIEGAKFLAQG-TIYPDVIESQSVNGPSAVIKSHHN-------VGGLPEDME 353

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL ++ K+ VR +  E+G+ 
Sbjct: 354 FELLEPLRELFKDEVRKVGEELGIP 378


>gi|253702073|ref|YP_003023262.1| NAD synthetase [Geobacter sp. M21]
 gi|251776923|gb|ACT19504.1| NAD+ synthetase [Geobacter sp. M21]
          Length = 273

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++VA +     G + V    +                  +    AR V +
Sbjct: 32  VLGLSGGIDSALVAYIAAEALGPENVYAYCM-----------PYRTSNPESEAHARLVAE 80

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           ++ +++ V           I     +Y       P     R         + R+     +
Sbjct: 81  SLGINYKVIG---------ITGMVDAYF---DLYPEASNMRRGN-----KMARERM--TI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
              H       V     +  ++              + T    +     P+GD+ K  V 
Sbjct: 122 LYDHSADVAGLVLGTSNKTELLL------------GYGTLHGDMASALNPIGDIYKSQVW 169

Query: 202 DLAREMGLD--IADKSDSQDI 220
           +L+  MG+   + +K  S D+
Sbjct: 170 ELSEAMGVPHEVIEKKPSADL 190


>gi|167753427|ref|ZP_02425554.1| hypothetical protein ALIPUT_01701 [Alistipes putredinis DSM 17216]
 gi|167658052|gb|EDS02182.1| hypothetical protein ALIPUT_01701 [Alistipes putredinis DSM 17216]
          Length = 511

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +L +   D RVV+ +SGGVDSSV A LL R 
Sbjct: 206 ELREKLGDDRVVLGLSGGVDSSVAAVLLHRA 236


>gi|296157213|ref|ZP_06840049.1| argininosuccinate synthase [Burkholderia sp. Ch1-1]
 gi|295892549|gb|EFG72331.1| argininosuccinate synthase [Burkholderia sp. Ch1-1]
          Length = 408

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             Y++   +        G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQD-----------NYDAEVVT-FTADIGQGEELEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     Y+ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQLGIKPENIYIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GA  ++ G
Sbjct: 107 EIARATGAQAVSHG 120


>gi|255038169|ref|YP_003088790.1| Argininosuccinate synthase [Dyadobacter fermentans DSM 18053]
 gi|254950925|gb|ACT95625.1| Argininosuccinate synthase [Dyadobacter fermentans DSM 18053]
          Length = 400

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              +VV+A SGG+D+S     L +  GY+V  V   L ++   S  +             
Sbjct: 2   SQPKVVLAFSGGLDTSFCVKYLAEDRGYEVYSV---LVDTGGFSDEELKTIEAN------ 52

Query: 78  RVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTR 134
                + V  H      + + N  I              P       + F    +    +
Sbjct: 53  --AYALGVKQHATISKTKEYYNDCIKYLIFGNILKNNTYPLSVSAERI-FQAVAVAEYAK 109

Query: 135 QLGADVLATG 144
           ++GA  +A G
Sbjct: 110 EIGASAIAHG 119


>gi|255281218|ref|ZP_05345773.1| GMP synthase [Bryantella formatexigens DSM 14469]
 gi|255268175|gb|EET61380.1| GMP synthase [Bryantella formatexigens DSM 14469]
          Length = 514

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSV A LL +  G  +  V     +     K +G               
Sbjct: 217 RVLCALSGGVDSSVAAVLLSKAVGEQLTCVF---VDHGLLRKNEGDEVEAVFGPKG---- 269

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              N++    + ++RF +    V  P       GE                     +++G
Sbjct: 270 -PYNLNFIRVNAQQRFYDKLSGVTEPEKKRKIIGEEF-----------IRVFEEEAKKIG 317

Query: 138 A-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           A D L  G      +  G  G+          + +               ++  PL D+ 
Sbjct: 318 AVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPLRDLF 369

Query: 197 KESVRDLAREMGLD 210
           K+ VR    E+G+ 
Sbjct: 370 KDEVRKAGLELGIP 383


>gi|213692591|ref|YP_002323177.1| GMP synthase, large subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524052|gb|ACJ52799.1| GMP synthase, large subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458743|dbj|BAJ69364.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIKLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|182436538|ref|YP_001824257.1| GMP synthase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326777161|ref|ZP_08236426.1| GMP synthase (glutamine-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465054|dbj|BAG19574.1| putative GMP synthase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326657494|gb|EGE42340.1| GMP synthase (glutamine-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 528

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 226 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T      V D E+RF +A+             G   +   +  +       L + ++
Sbjct: 277 VAAT-GAKLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQ-------LEILQE 328

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G +V            V   G       +           +         +L  PL  +
Sbjct: 329 EGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPDDIEFELVEPLRQL 381

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + +E+GL 
Sbjct: 382 FKDEVRMVGQELGLP 396


>gi|325136324|gb|EGC58932.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M0579]
          Length = 436

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|322411707|gb|EFY02615.1| GMP synthase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   + +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIEMEIAKIRETVGNRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +              +   + 
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLAD------------VEDPEK 304

Query: 121 NRTVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +  ++ +       ++  G D LA G        + + G       +          
Sbjct: 305 KRKIIGNEFVYVFDDEASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 355

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 -VGGLPEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|213864987|ref|ZP_03387106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 41

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            LGAD +ATGHY+R       D   +  + R +D  +DQSYFL+  
Sbjct: 1   DLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTL 41


>gi|289577704|ref|YP_003476331.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527417|gb|ADD01769.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 300

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 21/132 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +V+  +SGG DS +    +L ++GY+V+ + +      + S R              
Sbjct: 46  KGEKVLAVVSGGKDS-MALWDILVKEGYNVVAMYI-NLGIGEYSNRSQEV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTRQ 135
           +     N+   V D ++ F           Y   +T    PC  C   +K      V   
Sbjct: 96  KFAKENNLPLIVKDIKKEFG-------LDIYKLSKTLRRSPCSVCGS-IKRYLFNKVAYD 147

Query: 136 LGADVLATGHYI 147
            G   +ATGH +
Sbjct: 148 GGFSAVATGHNL 159


>gi|257063226|ref|YP_003142898.1| conserved hypothetical protein TIGR00268 [Slackia
           heliotrinireducens DSM 20476]
 gi|256790879|gb|ACV21549.1| conserved hypothetical protein TIGR00268 [Slackia
           heliotrinireducens DSM 20476]
          Length = 272

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA SGGVDS+    LL +  +DV+G      ++  A          +++ +A+  C  
Sbjct: 23  VAVAFSGGVDST----LLTKVAHDVLG------DAAVAVTAHPCVMPDRELDEAKAFCAG 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +   V          V   FA    A   P  C  C + + F+ ++      GA  + 
Sbjct: 73  EGIRQVVV------ETDV---FAIEGFAQNPPDRCYLCKKAL-FNQIMDAAAAAGAVHVV 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G          DD    R   R ++    +S                PL   ++ K  +
Sbjct: 123 EG-------SNMDDLGDYRPGMRALEEMGVES----------------PLRTAELTKAEI 159

Query: 201 RDLAREMGLDIADKS 215
           R+L+RE+GL    K 
Sbjct: 160 RELSRELGLPTWSKP 174


>gi|291456539|ref|ZP_06595929.1| GMP synthase [Bifidobacterium breve DSM 20213]
 gi|291381816|gb|EFE89334.1| GMP synthase [Bifidobacterium breve DSM 20213]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIKLITVDAADDFLKALKGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|239815742|ref|YP_002944652.1| GMP synthase [Variovorax paradoxus S110]
 gi|239802319|gb|ACS19386.1| GMP synthase, large subunit [Variovorax paradoxus S110]
          Length = 539

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 54/207 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +              
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMEMFEG---------- 279

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----S 131
                 ++      D  E F             AG   +   +  R +   + +      
Sbjct: 280 -----KLHAKVIRVDASELFLGK---------LAG---VSDPEAKRKIIGGEFVTVFKQE 322

Query: 132 VTR-------QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
             +         GA  LA G      +  G    ++ +  +           +     +Q
Sbjct: 323 AAKLKAGDGGHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQ 374

Query: 185 LC-DLRFPLGDMKKESVRDLAREMGLD 210
           L   L  PL D+ K+ VR+L   +GL 
Sbjct: 375 LGLKLLEPLRDLFKDEVRELGVALGLP 401


>gi|212224921|ref|YP_002308157.1| NAD synthetase [Thermococcus onnurineus NA1]
 gi|212009878|gb|ACJ17260.1| NH3-dependent NAD+ synthetase [Thermococcus onnurineus NA1]
          Length = 253

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 52/185 (28%)

Query: 31  VDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY 88
           +DS+  A L  +  G + V+G+ +  Y +              DV DA+ VC+ + + + 
Sbjct: 37  IDSATTAYLAVKALGREKVLGLIMPYYENG-------------DVEDAKLVCENLGIEYK 83

Query: 89  VFDYE---ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
           + +     + F  AV      S             N   +   +L        + L  G 
Sbjct: 84  LINIRPIVDEFEKAVGELDVKS-----------KGNIMARTRMILLYAHANSRNYLVLGT 132

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
             RS L  G             D   D +                PL ++ K  V +LA+
Sbjct: 133 SNRSELLTG------YFTKWG-DGASDYA----------------PLINIYKTEVWELAK 169

Query: 206 EMGLD 210
            +G+ 
Sbjct: 170 SLGVP 174


>gi|167037749|ref|YP_001665327.1| PP-loop domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116163|ref|YP_004186322.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856583|gb|ABY94991.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929254|gb|ADV79939.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 235

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 32/132 (24%)

Query: 23  VVVAMSGGVDSSVV----AALLKR---DGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVY 74
           + V +SGG DS V       LLK    + ++V+G+ L L Y++   +  +  C       
Sbjct: 24  IAVGVSGGKDS-VTLLYGLHLLKNFYPEKFEVMGLMLTLGYDNFDPTPVENFCQEK---- 78

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                     +  ++       +   I      Y   E   PC  C   ++   L +  +
Sbjct: 79  ---------GIPFFI-------KETDIKKIVFDYRKEE--NPCSLC-ANLRRGALNNFAK 119

Query: 135 QLGADVLATGHY 146
           + G + +A  H+
Sbjct: 120 EKGCNKVALAHH 131


>gi|215411307|ref|ZP_03420115.1| argininosuccinate synthase [Mycobacterium tuberculosis 94_M4241A]
 gi|298525157|ref|ZP_07012566.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           94_M4241A]
 gi|298494951|gb|EFI30245.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           94_M4241A]
          Length = 398

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +            D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEHMDVIRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L++  R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTVLNNALYMDRYPLVSAISRPLIVKHLVAAAREHGGG 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|299137866|ref|ZP_07031047.1| NAD+ synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298600507|gb|EFI56664.1| NAD+ synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 562

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 21/183 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + ++ +SGG+DS++VAA+     G + V G+ +            GS      V DA +
Sbjct: 305 KKALLGLSGGIDSALVAAIAVEALGAENVQGIGM-----PSEFSSTGS------VSDAEK 353

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           +   + ++  V    E +           + AG T     + N    ++ S L++++ + 
Sbjct: 354 LAQNLGIAFSVVPVREIYTQ--FSDSLQPFFAG-TSFGLAEENLQPRIRGSLLMALSNKT 410

Query: 137 GADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GA VL TG+       Y    G     +    D+ + + Y L             P   +
Sbjct: 411 GALVLTTGNKSEMATGYCTLYGDMVGALAVIGDVYKTEVYALSH--YANREREIIPEDTL 468

Query: 196 KKE 198
            K 
Sbjct: 469 TKP 471


>gi|288957052|ref|YP_003447393.1| argininosuccinate synthase [Azospirillum sp. B510]
 gi|288909360|dbj|BAI70849.1| argininosuccinate synthase [Azospirillum sp. B510]
          Length = 411

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 10  KKVVLAYSGGLDTSVILKWLQET-YSCEVVTF-----------TADLGQGEELEPARKKA 57

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
           + + +     ++ D  E F    + P          +Y  G +    +   R +      
Sbjct: 58  ELLGIKPENIFIDDLREEFVRDFVFPMFRANTLYEGTYLLGTSIARPLIAKRQI------ 111

Query: 131 SVTRQLGADVLATG 144
            +   +GAD +A G
Sbjct: 112 EIANMVGADAVAHG 125


>gi|150402523|ref|YP_001329817.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           maripaludis C7]
 gi|150033553|gb|ABR65666.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           maripaludis C7]
          Length = 383

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 46/209 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V +S G+DS V A ++ + G  ++ + ++  +      +K +        +A+ V
Sbjct: 181 QGRVLVLISDGIDSPVSAYMMAKRGCKLLLLHMKTSDEGLEKTQKLAEVLSDFDPEAKFV 240

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-----PLPCVDCNRTVKFSDLLSVTR 134
                      D++E           +   A  T        C+ C +      +L +  
Sbjct: 241 ---------YVDFKEE---------LAKIKAELTEINRDKYTCIYCKKY-----MLKLAE 277

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +      A  H   + +   + G+            ++            L     PL  
Sbjct: 278 KH-----AKWHKCDAIINGDNMGQV------ASQTLKNLRVISEGIDYPILR----PLIG 322

Query: 195 MKKESVRDLAREMGLDIADKSDSQDI-CF 222
           + K  + D+AR++G    + S S+++ CF
Sbjct: 323 LDKVEIMDIARKIG--TFEISTSKEVSCF 349


>gi|81427749|ref|YP_394748.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus sakei subsp. sakei 23K]
 gi|91206809|sp|Q38ZE1|GUAA_LACSS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78609390|emb|CAI54436.1| Guanosine monophosphate synthase (Glutamine amidotransferase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL R  G  ++ +            RKG            +
Sbjct: 222 DKKVLLGLSGGVDSSVVGVLLHRAIGDQLVSIF-----VDHGLLRKGE---------VEQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +++     ++    D +ERF + +                 +  N  ++         
Sbjct: 268 VMESLGGKFGLNIIQVDAKERFMSKLAGVSDPEKKRK------IIGNEFIQV--FDEEAT 319

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G        + + G       +           +    +     L  PL 
Sbjct: 320 KLNGIDFLAQG---TLYTDIIESGTSTATTIKSHHN-------VGGLPEDMQFSLIEPLN 369

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VRDL  ++G+ 
Sbjct: 370 TLFKDEVRDLGEKLGMP 386


>gi|15608796|ref|NP_216174.1| argininosuccinate synthase [Mycobacterium tuberculosis H37Rv]
 gi|15841114|ref|NP_336151.1| argininosuccinate synthase [Mycobacterium tuberculosis CDC1551]
 gi|31792845|ref|NP_855338.1| argininosuccinate synthase [Mycobacterium bovis AF2122/97]
 gi|121637566|ref|YP_977789.1| argininosuccinate synthase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661454|ref|YP_001282977.1| argininosuccinate synthase [Mycobacterium tuberculosis H37Ra]
 gi|148822867|ref|YP_001287621.1| argininosuccinate synthase [Mycobacterium tuberculosis F11]
 gi|215404037|ref|ZP_03416218.1| argininosuccinate synthase [Mycobacterium tuberculosis 02_1987]
 gi|215426980|ref|ZP_03424899.1| argininosuccinate synthase [Mycobacterium tuberculosis T92]
 gi|215430552|ref|ZP_03428471.1| argininosuccinate synthase [Mycobacterium tuberculosis EAS054]
 gi|215445843|ref|ZP_03432595.1| argininosuccinate synthase [Mycobacterium tuberculosis T85]
 gi|218753365|ref|ZP_03532161.1| argininosuccinate synthase [Mycobacterium tuberculosis GM 1503]
 gi|224990041|ref|YP_002644728.1| argininosuccinate synthase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799302|ref|YP_003032303.1| argininosuccinate synthase argG [Mycobacterium tuberculosis KZN
           1435]
 gi|254231857|ref|ZP_04925184.1| argininosuccinate synthase argG [Mycobacterium tuberculosis C]
 gi|254550666|ref|ZP_05141113.1| argininosuccinate synthase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260186608|ref|ZP_05764082.1| argininosuccinate synthase [Mycobacterium tuberculosis CPHL_A]
 gi|260200722|ref|ZP_05768213.1| argininosuccinate synthase [Mycobacterium tuberculosis T46]
 gi|260204928|ref|ZP_05772419.1| argininosuccinate synthase [Mycobacterium tuberculosis K85]
 gi|289443113|ref|ZP_06432857.1| argininosuccinate synthase [Mycobacterium tuberculosis T46]
 gi|289447270|ref|ZP_06437014.1| argininosuccinate synthase argG [Mycobacterium tuberculosis CPHL_A]
 gi|289554567|ref|ZP_06443777.1| argininosuccinate synthase argG [Mycobacterium tuberculosis KZN
           605]
 gi|289574327|ref|ZP_06454554.1| argininosuccinate synthase argG [Mycobacterium tuberculosis K85]
 gi|289745904|ref|ZP_06505282.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           02_1987]
 gi|289750208|ref|ZP_06509586.1| argininosuccinate synthase argG [Mycobacterium tuberculosis T92]
 gi|289753747|ref|ZP_06513125.1| argininosuccinate synthase [Mycobacterium tuberculosis EAS054]
 gi|289757764|ref|ZP_06517142.1| argininosuccinate synthase [Mycobacterium tuberculosis T85]
 gi|289761808|ref|ZP_06521186.1| argininosuccinate synthase argG [Mycobacterium tuberculosis GM
           1503]
 gi|294996608|ref|ZP_06802299.1| argininosuccinate synthase [Mycobacterium tuberculosis 210]
 gi|297634211|ref|ZP_06951991.1| argininosuccinate synthase [Mycobacterium tuberculosis KZN 4207]
 gi|297731198|ref|ZP_06960316.1| argininosuccinate synthase [Mycobacterium tuberculosis KZN R506]
 gi|306775845|ref|ZP_07414182.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu001]
 gi|306784391|ref|ZP_07422713.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu003]
 gi|306788759|ref|ZP_07427081.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu004]
 gi|306793093|ref|ZP_07431395.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu005]
 gi|306797475|ref|ZP_07435777.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu006]
 gi|306803356|ref|ZP_07440024.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu008]
 gi|306807937|ref|ZP_07444605.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu007]
 gi|306967754|ref|ZP_07480415.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu009]
 gi|306971952|ref|ZP_07484613.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu010]
 gi|307079667|ref|ZP_07488837.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu011]
 gi|307084239|ref|ZP_07493352.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu012]
 gi|313658530|ref|ZP_07815410.1| argininosuccinate synthase [Mycobacterium tuberculosis KZN V2475]
 gi|54036772|sp|P63643|ASSY_MYCBO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|54040841|sp|P63642|ASSY_MYCTU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166220991|sp|A1KJ75|ASSY_MYCBP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166220995|sp|A5U315|ASSY_MYCTA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807528|sp|C1ANT1|ASSY_MYCBT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|1839010|emb|CAB06629.1| Probable Argininosuccinate synthase argG [Mycobacterium
           tuberculosis H37Rv]
 gi|13881330|gb|AAK45965.1| argininosuccinate synthase [Mycobacterium tuberculosis CDC1551]
 gi|31618435|emb|CAD96353.1| Probable Argininosuccinate synthase argG [Mycobacterium bovis
           AF2122/97]
 gi|121493213|emb|CAL71684.1| Probable Argininosuccinate synthase argG [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600916|gb|EAY59926.1| argininosuccinate synthase argG [Mycobacterium tuberculosis C]
 gi|148505606|gb|ABQ73415.1| argininosuccinate synthase [Mycobacterium tuberculosis H37Ra]
 gi|148721394|gb|ABR06019.1| argininosuccinate synthase argG [Mycobacterium tuberculosis F11]
 gi|224773154|dbj|BAH25960.1| argininosuccinate synthase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320805|gb|ACT25408.1| argininosuccinate synthase argG [Mycobacterium tuberculosis KZN
           1435]
 gi|289416032|gb|EFD13272.1| argininosuccinate synthase [Mycobacterium tuberculosis T46]
 gi|289420228|gb|EFD17429.1| argininosuccinate synthase argG [Mycobacterium tuberculosis CPHL_A]
 gi|289439199|gb|EFD21692.1| argininosuccinate synthase argG [Mycobacterium tuberculosis KZN
           605]
 gi|289538758|gb|EFD43336.1| argininosuccinate synthase argG [Mycobacterium tuberculosis K85]
 gi|289686432|gb|EFD53920.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           02_1987]
 gi|289690795|gb|EFD58224.1| argininosuccinate synthase argG [Mycobacterium tuberculosis T92]
 gi|289694334|gb|EFD61763.1| argininosuccinate synthase [Mycobacterium tuberculosis EAS054]
 gi|289709314|gb|EFD73330.1| argininosuccinate synthase argG [Mycobacterium tuberculosis GM
           1503]
 gi|289713328|gb|EFD77340.1| argininosuccinate synthase [Mycobacterium tuberculosis T85]
 gi|308215598|gb|EFO74997.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu001]
 gi|308330859|gb|EFP19710.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu003]
 gi|308334678|gb|EFP23529.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu004]
 gi|308338471|gb|EFP27322.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu005]
 gi|308342175|gb|EFP31026.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu006]
 gi|308345667|gb|EFP34518.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu007]
 gi|308349968|gb|EFP38819.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu008]
 gi|308354604|gb|EFP43455.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu009]
 gi|308358476|gb|EFP47327.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu010]
 gi|308362413|gb|EFP51264.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu011]
 gi|308366144|gb|EFP54995.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           SUMu012]
 gi|323719749|gb|EGB28863.1| argininosuccinate synthase argG [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903272|gb|EGE50205.1| argininosuccinate synthase argG [Mycobacterium tuberculosis W-148]
 gi|328459053|gb|AEB04476.1| argininosuccinate synthase argG [Mycobacterium tuberculosis KZN
           4207]
          Length = 398

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +            D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEHMDVIRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L++  R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTVLNNALYMDRYPLVSAISRPLIVKHLVAAAREHGGG 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|327470051|gb|EGF15515.1| GMP synthase [Streptococcus sanguinis SK330]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVSDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      ++     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMNM-----LGGKFGLNIIKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|319410441|emb|CBY90801.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase;
           tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria
           meningitidis WUE 2594]
          Length = 436

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|304436679|ref|ZP_07396648.1| GMP synthase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370375|gb|EFM24031.1| GMP synthase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 518

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 29/211 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +    +    +L +     R + A+SGGVDSSV A LL +  G  +  V     +     
Sbjct: 203 MDSFVQKTIEELRQQIGGGRALCALSGGVDSSVAAVLLSKAIGSQLTCVF---VDHGLLR 259

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           K +G                T +V+    +  +RF   +                 +   
Sbjct: 260 KNEGDEVEAVFGR-----GGTYDVNFVRINARDRFYARLKGVTEPEQKRK------IIGE 308

Query: 122 RTVKFSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
             ++        R++GA D L  G        V + G  +  + +           +   
Sbjct: 309 EFIRV--FEEAAREIGAVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGL 356

Query: 181 TQQQ-LCDLRFPLGDMKKESVRDLAREMGLD 210
                  ++  PL  + K+ VR   RE+G+ 
Sbjct: 357 PDHVDFKEIVEPLRLLFKDEVRAAGRELGIP 387


>gi|237753451|ref|ZP_04583931.1| argininosuccinate synthase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375718|gb|EEO25809.1| argininosuccinate synthase [Helicobacter winghamensis ATCC BAA-430]
          Length = 403

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 32/142 (22%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + KN K  +VV+A SGG+D+SV+   L    G +V+  T                  G++
Sbjct: 1   MQKNFK--KVVLAYSGGLDTSVILKWLGDTYGCEVVTFT-------------ADIGQGEE 45

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNR 122
           V  AR     + +     ++ D  E F    + P           Y  G +    +   R
Sbjct: 46  VEPARAKAQKLGIKPENIFIEDLREEFIRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR 105

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
                 L+ + +Q+GAD ++ G
Sbjct: 106 ------LVEIAKQVGADAISHG 121


>gi|74204229|dbj|BAE39875.1| unnamed protein product [Mus musculus]
          Length = 692

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 40/210 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGGVDS+V  ALL R             +   A          ++         
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRA---------LNQDQDIAVHIDNGFMRKRESQSVEEALK 288

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKFSDLLS 131
            + +   V +    F N              TP   +             R +     + 
Sbjct: 289 KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVK 346

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSYFLFAT 180
           +  ++       G     R  V   G  R  +     L             + +  +   
Sbjct: 347 IANEV------IGEMSLKREEVLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKL 400

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            ++    +  PL D  K+ VR L RE+ L 
Sbjct: 401 REE--GKVIEPLKDFHKDEVRILGRELDLP 428


>gi|73748640|ref|YP_307879.1| GMP synthase [Dehalococcoides sp. CBDB1]
 gi|91206805|sp|Q3ZXH7|GUAA_DEHSC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|73660356|emb|CAI82963.1| GMP synthase [Dehalococcoides sp. CBDB1]
          Length = 533

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDS+VVA+L+ +  G  +  + +     R+    +              
Sbjct: 235 DGQVICALSGGVDSAVVASLIHKAIGDQLTCIYVNNGLLRREEADRTLHVFK-------- 286

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
             + + +     D         I  F  S      P     V  +  +K         +L
Sbjct: 287 --NHMGMKIIYVDA--------IDRFLESLGGITDPEQKRKVIGSEFIKV--FEDEACKL 334

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D LA G      +       +     +           +          L  PL  +
Sbjct: 335 GQIDFLAQGTLYPDVIESVSSVSKASAKIKSHHN-------VGGLPAHMKLKLIEPLRYL 387

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L +E+GL 
Sbjct: 388 FKDEVRLLGKELGLP 402


>gi|325674254|ref|ZP_08153943.1| argininosuccinate synthase [Rhodococcus equi ATCC 33707]
 gi|325554934|gb|EGD24607.1| argininosuccinate synthase [Rhodococcus equi ATCC 33707]
          Length = 399

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAISWIGKETGKEVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F +   +P   + A      P V   +R +    ++   R  G 
Sbjct: 52  LDCGAVESVVVDARDEFADEYCLPTIQANALYMDRYPLVSAISRPLIVKHIVEAARAHGG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            V++ G                    +  D  R +  F       +   +  P+ D    
Sbjct: 112 TVVSHG-----------------CTGKGNDQVRFEVGFGALAPDLE---VIAPVRDYAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 152 REKAIAFAEENDIPINVTKRS 172


>gi|282881884|ref|ZP_06290535.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Peptoniphilus
           lacrimalis 315-B]
 gi|281298293|gb|EFA90738.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Peptoniphilus
           lacrimalis 315-B]
          Length = 277

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 22/130 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           ++ VA+SGG DS  +A L++          L+ +     S    +   G    ++  +  
Sbjct: 45  KIAVAISGGKDSLTLAKLMQE---------LKRHRQVDFSLEFIAMDPGYIKENSDNLLY 95

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  + +        + +++ +    A     G++  PC  C   ++  +L S  ++LG 
Sbjct: 96  NCKKLGIP------VKLYKSDIFE-VAEKLTNGDS--PCYMC-ARMRRGNLYSKAKELGC 145

Query: 139 DVLATGHYIR 148
           + LA GH+  
Sbjct: 146 NKLALGHHFN 155


>gi|270292845|ref|ZP_06199056.1| GMP synthase [Streptococcus sp. M143]
 gi|270278824|gb|EFA24670.1| GMP synthase [Streptococcus sp. M143]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADASKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|262402847|ref|ZP_06079408.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC586]
 gi|262351629|gb|EEZ00762.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC586]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|325204175|gb|ADY99628.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240355]
          Length = 426

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KICVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|291514449|emb|CBK63659.1| GMP synthase (glutamine-hydrolyzing) [Alistipes shahii WAL 8301]
          Length = 508

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +L +   D +VV+A+SGGVDSSV A LL + 
Sbjct: 205 ELREKLGDDKVVLALSGGVDSSVAAVLLHKA 235


>gi|261212132|ref|ZP_05926418.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC341]
 gi|260838740|gb|EEX65391.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC341]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|258627197|ref|ZP_05721985.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM603]
 gi|258580499|gb|EEW05460.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM603]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|254421737|ref|ZP_05035455.1| glutamine amidotransferase, SNO family [Synechococcus sp. PCC 7335]
 gi|196189226|gb|EDX84190.1| glutamine amidotransferase, SNO family [Synechococcus sp. PCC 7335]
          Length = 542

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RK       ++++    
Sbjct: 238 DQRVLLALSGGVDSSTLAFLLHKA----IGEQLTCMFIDQGFMRKREPERLIEIFN---- 289

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            +  +++    D  +RF   +                 +  +  ++       + +LG  
Sbjct: 290 -NRFHINVEYIDARDRFLAKIKGVTDPEEKRK------IIGHEFIQV--FEEESTRLGPF 340

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   D         R     +   + +    +     L  PL  + K+
Sbjct: 341 DYLAQGTLYPDVIESADTNVDPSTGERVAVKIKSH-HNVGGLPEDLRFKLIEPLRKLFKD 399

Query: 199 SVRDLAREMGLD 210
            VR +   + L 
Sbjct: 400 EVRKVGTAVNLP 411


>gi|157813134|gb|ABV81312.1| putative GMP synthetase [Lithobius forticatus]
          Length = 197

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +   +  VI V +     RK   ++             
Sbjct: 43  NHKVLMLVSGGVDSTVCAALLHKALKEDQVIAVHIDNGFMRKNESKQVEQSL-------- 94

Query: 78  RVCDTINVSHYVFDYEERFRNAV 100
              + I +   V +    F N V
Sbjct: 95  ---NKIGLKLKVVNACHAFYNGV 114


>gi|160946337|ref|ZP_02093546.1| hypothetical protein PEPMIC_00297 [Parvimonas micra ATCC 33270]
 gi|158447453|gb|EDP24448.1| hypothetical protein PEPMIC_00297 [Parvimonas micra ATCC 33270]
          Length = 235

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 41/183 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V  +SGGVDS+V+AAL K             ++    +         +D  DA+ V D 
Sbjct: 24  IVYGLSGGVDSAVIAALSKLA-----------FDDESLAIMMPINSCEEDEKDAKLVIDK 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             ++    D  + +       F  S   G+  +   +    ++ + L    +        
Sbjct: 73  FKLNAIKVDLSKTYS-----VFTDSVEKGDNSMAYANIKPRLRMTTLYYYAQ-------- 119

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
              Y+        +           D   D                  PL D  K  + +
Sbjct: 120 LKRYLVVGTSNKSEFTVGYFTKYG-DSGSD----------------LMPLVDFTKREIFE 162

Query: 203 LAR 205
           LA+
Sbjct: 163 LAK 165


>gi|28210080|ref|NP_781024.1| PP family ATPase [Clostridium tetani E88]
 gi|28202516|gb|AAO34961.1| ATPase of the pp-loop superfamily [Clostridium tetani E88]
          Length = 236

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 33/139 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDV--------IGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + + +SGG DS  +  LL +  Y V        I +T+                   D  
Sbjct: 24  IAIGLSGGKDSLALLYLLSK--YRVFSPERFNIIAITI-------------DPGTNMDFS 68

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             + +C  ++V  ++ D     +  V               PC  C   ++   L    +
Sbjct: 69  PLKNLCQELDVPLHIIDSNI--KEIVFD--IRKEK-----NPCSLC-ANLRRGILNDNAK 118

Query: 135 QLGADVLATGHYIRSRLYV 153
           +LG + +A GH+    +  
Sbjct: 119 KLGCNKVALGHHKNDAIET 137


>gi|20094854|ref|NP_614701.1| NAD synthase [Methanopyrus kandleri AV19]
 gi|25090760|sp|Q8TVH1|NADE_METKA RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|19888078|gb|AAM02631.1| NAD synthase [Methanopyrus kandleri AV19]
          Length = 284

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 62/195 (31%), Gaps = 52/195 (26%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGGVDSS    L     G + V+ + L                  +DV DA    +
Sbjct: 39  VVGLSGGVDSSTTLGLAVEALGRENVVALIL-----------PERDTPEEDVEDAVEAAE 87

Query: 82  TINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGA 138
              V ++V D  E     V+  F   SY          D N    V+   L     +L  
Sbjct: 88  RFGVEYHVHDITE-----VLRAFGTGSYVPCHPFSRKSDANLKPRVRMCVLYYFANELDG 142

Query: 139 DVLATG---HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            VL TG    ++     +  DG          D+                     P+  +
Sbjct: 143 LVLGTGNRTEWLTGYFTLHGDG--------ACDVA--------------------PIRHL 174

Query: 196 KKESVRDLAREMGLD 210
            K  V  +A  +G+ 
Sbjct: 175 YKTQVYVIAEHLGVP 189


>gi|329955642|ref|ZP_08296550.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056]
 gi|328526045|gb|EGF53069.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056]
          Length = 423

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 22 RVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          +++VA+SGG DS V    LL+  GY+        +   + S R        D    R++C
Sbjct: 21 KILVALSGGADS-VALLCLLQTLGYECEAAHCNFHLRGEESDR--------DETFVRQLC 71

Query: 81 DTINVSHYVFDY 92
              V  ++  +
Sbjct: 72 AKRQVPLHIVHF 83


>gi|325208130|gb|ADZ03582.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis NZ-05/33]
          Length = 426

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|258619965|ref|ZP_05715005.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM573]
 gi|258587698|gb|EEW12407.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM573]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 368

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 369 RELFKDEVRKIGLELGLP 386


>gi|197117160|ref|YP_002137587.1| GMP synthase [Geobacter bemidjiensis Bem]
 gi|197086520|gb|ACH37791.1| guanosine monophosphate synthase [Geobacter bemidjiensis Bem]
          Length = 516

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 28/191 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDS+VVA L+ +  G  +  V +     RK    K      +         
Sbjct: 221 KVLCALSGGVDSAVVAVLIHKAIGDQLHCVFVNNGLLRKGEADKVVNLFTKHFK------ 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
               ++    D  +RF            +  E     +  N  +         ++LG  D
Sbjct: 275 ----INLAHVDAADRFLG-----MLEGVSDPEQK-RKIIGNEFI--YLFEEEAKKLGQVD 322

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            LA G  +   +      K    + +           +    ++    L  P+ ++ K+ 
Sbjct: 323 YLAQG-TLYPDVIESVSTKGPSAVIKSHHN-------VGGLPEKMNLKLLEPVRELFKDE 374

Query: 200 VRDLAREMGLD 210
           VR L +E+G+ 
Sbjct: 375 VRLLGKELGMP 385


>gi|157124722|ref|XP_001654171.1| gmp synthase [Aedes aegypti]
 gi|108882800|gb|EAT47025.1| gmp synthase [Aedes aegypti]
          Length = 684

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 42/212 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + +V++ +SGGVDS+V AALL+          VI V +     RK               
Sbjct: 230 NSKVLLLVSGGVDSTVCAALLRTALKPEQ---VIAVHIDNGFMRKNESAT---------- 276

Query: 75  DARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCN----RTVKFS 127
              +    + V   + D   +F      + VP   S    +TP+ C   +    R +   
Sbjct: 277 -VEKSLRELGVDLMMKDALYQFTRGTTTIKVP--GSLYNQDTPMLCQTTSPEDKRKIIGD 333

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQ- 183
             + V+ +     +     + +       G  R  +          +  +        + 
Sbjct: 334 VFVKVSNE-----IIKDLNLNADEVFLAQGTLRPDLIESASTLVSTKADTIKTHHNDTEL 388

Query: 184 --QLC---DLRFPLGDMKKESVRDLAREMGLD 210
             QL     +  PL D  K+ VR L  E+GL 
Sbjct: 389 IRQLRETGRVIEPLQDFHKDEVRQLGYELGLP 420


>gi|24379503|ref|NP_721458.1| GMP synthase [Streptococcus mutans UA159]
 gi|44887999|sp|Q8DU81|GUAA_STRMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24377443|gb|AAN58764.1|AE014945_1 putative GMP synthase [Streptococcus mutans UA159]
          Length = 517

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   + +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 205 MDSFIDMEIEKIREQVGNRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF + +                 V  
Sbjct: 261 RKGEGDQVME-------MLGGRFGLNIIRVDASKRFLDLLAGIDDPEKKRKIIGNEFVYV 313

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++Q G D LA G        V + G       +           +   
Sbjct: 314 -----FDD--EASKQKGVDFLAQG---TLYTDVIESGTETAQTIKSHHN-------VGGL 356

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 357 PEDMQFELIEPLNTLFKDEVRTLGTALGMP 386


>gi|167966586|ref|ZP_02548863.1| argininosuccinate synthase [Mycobacterium tuberculosis H37Ra]
          Length = 269

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L    +            D      V 
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEHMDVIRQ--RALDCGAVEAV- 60

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L++  R+ G  
Sbjct: 61  --------VVDARDEFAEGYCLPTVLNNALYMDRYPLVSAISRPLIVKHLVAAAREHGGG 112

Query: 140 VLATG 144
           ++A G
Sbjct: 113 IVAHG 117


>gi|152991389|ref|YP_001357111.1| hypothetical protein NIS_1648 [Nitratiruptor sp. SB155-2]
 gi|151423250|dbj|BAF70754.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 571

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 53/154 (34%), Gaps = 29/154 (18%)

Query: 23  VVVAMSGGVDSS-VVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V   +SGGVDSS V AA  K   GY      L  Y+     KR        ++  AR V 
Sbjct: 224 VASLLSGGVDSSFVSAA-AKEMQGY------LATYSIGYEEKRY------SELRYARMVA 270

Query: 81  DTINVSH-YVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             I   H  V   +E F      V+  F           P V  + +V    L+   ++ 
Sbjct: 271 SHIGSEHTEVVMTKEDFFETLYKVVEHFDE---------P-VGDSASVPLYFLMKRIKKD 320

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           G  ++ +G                  + R  DL+
Sbjct: 321 GFRIVLSGEGGDEIFLGYRQYFEMFDLYRAKDLK 354


>gi|149197526|ref|ZP_01874577.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lentisphaera araneosa HTCC2155]
 gi|149139544|gb|EDM27946.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lentisphaera araneosa HTCC2155]
          Length = 598

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 31/197 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             +V + +SGGVDS+V  ALL +  G + V G+ +         ++  S    +++  A 
Sbjct: 210 GKKVFLLVSGGVDSNVAFALLNKALGDENVYGLHV----DNGLMRKDESAWVKEELKQA- 264

Query: 78  RVCDTINVS-HYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   S  +V D  + F      V  P A     G+T L  V C   V+ SDL+  +
Sbjct: 265 ------GFSNFHVVDAGDTFLKNLAGVSEPQAKRVIIGDTFL-DVKC-EAVEESDLVDDS 316

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             LG   +           +   G     + +      D+        Q     +  PL 
Sbjct: 317 WLLGQGTIYPD-------TIESGGTENSHLIKTHHNRVDR--IQELINQ---GKVIEPLA 364

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR+L   +GL 
Sbjct: 365 ELYKDEVRELGELLGLP 381


>gi|312622345|ref|YP_004023958.1| gmp synthase, large subunit [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202812|gb|ADQ46139.1| GMP synthase, large subunit [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 511

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 41/199 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV A+SGGVDSSV A L+ +     IG  L          RKG         +   V
Sbjct: 215 NQKVVCALSGGVDSSVAAVLVHKA----IGKNLYCIFVDHGLLRKGE------AEEVMSV 264

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
             D  +++    D ++RF  A           G T     +  R +              
Sbjct: 265 FKDQFDMNVIKVDAKDRFLEA---------LRGVT---DPEEKRKIIGREFIRVFEEEAE 312

Query: 135 QLG-ADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +LG    L  G  +       VG     +         E+           +Q+     P
Sbjct: 313 KLGDIKFLVQGTIYPDVVESGVGKAATIKSHHNVGGLPEK--------IKFEQI---IEP 361

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +  E+G+ 
Sbjct: 362 LRELFKDEVRRVGIELGIP 380


>gi|289616997|emb|CBI56280.1| unnamed protein product [Sordaria macrospora]
          Length = 520

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG   + +     +         Q   D +     
Sbjct: 227 VLGAVSGGVDSTVAAKLMKEA----IGD--RFWAVLVNNGVMRLDECEQVERDLK---QH 277

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++  V D  + F   +                 +D  +  K    L  T         
Sbjct: 278 LGINLTVIDASKDFLEGLKGLHDPEQKRKFIGGKFIDSGKGTKIGFFLQGTL-------- 329

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
               I S  + G     +         ER         T  Q   L  PL  + K+ VR+
Sbjct: 330 YPDVIESLSFKGPSATIKTHHNVGGLPER--------MTNGQGLQLIEPLRSLYKDEVRE 381

Query: 203 LAREMGLD 210
           L R +G+ 
Sbjct: 382 LGRTLGIH 389


>gi|321475439|gb|EFX86402.1| hypothetical protein DAPPUDRAFT_187509 [Daphnia pulex]
          Length = 410

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ RV++A SGG+D+S +   L ++GYDVI   L      +               +A+ 
Sbjct: 3   KNERVILAYSGGLDTSCILVWLIQEGYDVI-CYLANIGQNED----------FGAAEAKA 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDL 129
           +C  +     +  D  E F +  + P           Y  G +   PC+          L
Sbjct: 52  MC--LGAKKIIIEDLRENFIDDYVWPSIRAGLIYEDRYLLGTSLARPCIASG-------L 102

Query: 130 LSVTRQLGADVLATG 144
           +    +  A+ ++ G
Sbjct: 103 VRAAIRENANFISHG 117


>gi|317182294|dbj|BAJ60078.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F57]
          Length = 508

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+  R L +E+G
Sbjct: 358 PLRELFKDEARLLGKELG 375


>gi|260881783|ref|ZP_05405216.2| GMP synthase [Mitsuokella multacida DSM 20544]
 gi|260847878|gb|EEX67885.1| GMP synthase [Mitsuokella multacida DSM 20544]
          Length = 511

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 68/213 (31%), Gaps = 33/213 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +    +    +L       + + A+SGGVDSSV A LL +  G  +  V     +     
Sbjct: 197 MDSFVKTTIAELKAKIGTGKALCALSGGVDSSVAAVLLSKAIGKQLTCVF---VDHGLLR 253

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV 118
           K +G         +        +++    + ++RF      V  P       GE      
Sbjct: 254 KDEGDQVEAVFGPEG-----PYDLNFIRVNAKDRFYEKLKGVTEPEKKRKIIGEEF---- 304

Query: 119 DCNRTVKFSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
                          +++GA D L  G        V + G  +  + +          F+
Sbjct: 305 -------IRVFEEEAKKIGAVDYLVQG---TIYPDVIESGLGKSAVIKSHHNVGGLPDFV 354

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                 +   L F      K+ VR   RE+GL 
Sbjct: 355 DFKEIVEPLRLLF------KDEVRAAGRELGLP 381


>gi|167760717|ref|ZP_02432844.1| hypothetical protein CLOSCI_03102 [Clostridium scindens ATCC 35704]
 gi|167661604|gb|EDS05734.1| hypothetical protein CLOSCI_03102 [Clostridium scindens ATCC 35704]
          Length = 515

 Score = 52.1 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 34/204 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +     +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G      
Sbjct: 209 QIREKVGKGKVLCALSGGVDSSVAAVLLSKAVGDQLTCVF---VDHGLLRKNEGD----- 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +V  A       +++    + ++RF   +                 +     ++      
Sbjct: 261 EVEAAFGPEGAYDLNFIRVNAQQRFYEKLAGVSEPEAKRK------IIGEEFIRV--FEE 312

Query: 132 VTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLC 186
             +++GA D L  G      +  G  G+    +       +    D              
Sbjct: 313 EAKKIGAVDFLVQGTIYPDVVESGLGGESAVIKSHHNVGGLPDCVD------------FK 360

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL D+ K+ VR    E+G+ 
Sbjct: 361 EIIEPLRDLFKDEVRKAGLELGIP 384


>gi|325128268|gb|EGC51153.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis N1568]
          Length = 426

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|313678798|ref|YP_004056538.1| NAD+ synthetase [Mycoplasma bovis PG45]
 gi|312950537|gb|ADR25132.1| NAD+ synthetase [Mycoplasma bovis PG45]
          Length = 270

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 46/198 (23%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDVY 74
           KN K    +V +SGG+DS++V +L  +   +  IG+ +                   D+ 
Sbjct: 38  KNAKAKGCIVGISGGIDSALVVSLCAKAFPNNTIGIVM------------PIDSMMHDLD 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSV 132
           D +++   IN+       E+ F               E        N    ++ + L + 
Sbjct: 86  DIKKLESAINLKFKTISLEKSFEE------IKKSLNNEVDNLLAISNIKPRLRMTALYAY 139

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +Q             + L +G D +    +       +   Y               P+
Sbjct: 140 AQQ------------NNYLVMGTDNQDEYFI---GYFTK---YGDGGVD-------LLPI 174

Query: 193 GDMKKESVRDLAREMGLD 210
             + K  VR++A+ + + 
Sbjct: 175 SKLLKSEVREIAKYLNVP 192


>gi|302342587|ref|YP_003807116.1| NAD+ synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639200|gb|ADK84522.1| NAD+ synthetase [Desulfarculus baarsii DSM 2075]
          Length = 565

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++ AA+     G  +V+GVT+                +G+ + DA+ +
Sbjct: 302 KVTLGLSGGIDSALTAAVAVSALGAQNVVGVTM-----------PSQYTSGETLSDAQLL 350

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--CVDCN--RTVKFSDLLSVTRQ 135
              + V              V   F         P P      N    ++ + L++++ +
Sbjct: 351 AANLGVELLTVPL-----KGVYDVFIDQMRPALGPGPLGVEAENLQARIRGAILMTLSNR 405

Query: 136 LGADVLATGHYIRSRL 151
            G  VL TG+   + +
Sbjct: 406 FGWLVLTTGNKSETAV 421


>gi|295086827|emb|CBK68350.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides xylanisolvens
           XB1A]
          Length = 507

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 35/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +VV+ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 ELKEQLGDDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNEFKNVMKD 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    + + ++    D  E+F      V  P               +  R +    
Sbjct: 263 Y--------ECLGLNVIGVDASEKFFTELAGVAEP---------------EAKRKIIGKG 299

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + V   + A  +    ++       D  +   I    +    +    +    ++    L
Sbjct: 300 FIDV-FDVEAHKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKL 354

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR + RE+G+ 
Sbjct: 355 CEPLRLLFKDEVRRVGRELGMP 376


>gi|237715568|ref|ZP_04546049.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. D1]
 gi|262408577|ref|ZP_06085123.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|294647045|ref|ZP_06724658.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809879|ref|ZP_06768555.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298481412|ref|ZP_06999604.1| GMP synthase [Bacteroides sp. D22]
 gi|229444277|gb|EEO50068.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. D1]
 gi|262353442|gb|EEZ02536.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|292637622|gb|EFF56027.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442908|gb|EFG11699.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298272276|gb|EFI13845.1| GMP synthase [Bacteroides sp. D22]
          Length = 507

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 35/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +VV+ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 ELKEQLGDDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNEFKNVMKD 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    + + ++    D  E+F      V  P               +  R +    
Sbjct: 263 Y--------ECLGLNVIGVDASEKFFTELAGVAEP---------------EAKRKIIGKG 299

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + V   + A  +    ++       D  +   I    +    +    +    ++    L
Sbjct: 300 FIDV-FDVEAHKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKL 354

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR + RE+G+ 
Sbjct: 355 CEPLRLLFKDEVRRVGRELGMP 376


>gi|143012|gb|AAA22497.1| GMP synthetase [Bacillus subtilis]
          Length = 513

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 66/193 (34%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDSSVVA L+ +  G  +  +            RKG           + 
Sbjct: 219 DKQVLCGLSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGEREGVM-----KT 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
             +  N++    D ++RF N +                 +  N  +          +L G
Sbjct: 269 FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRK------IIGNEFIYV--FDDEADKLKG 320

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D LA G        + + G       +           +    +    +L  PL  + K
Sbjct: 321 IDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIEPLNTLFK 370

Query: 198 ESVRDLAREMGLD 210
           + VR L  E+G+ 
Sbjct: 371 DEVRALGTELGIP 383


>gi|320538125|ref|ZP_08038020.1| GMP synthase protein [Treponema phagedenis F0421]
 gi|320144942|gb|EFW36663.1| GMP synthase protein [Treponema phagedenis F0421]
          Length = 529

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K     +V++A+SGGVDSSV+AALL +  G ++  + +   +     K +G      
Sbjct: 227 DVQKTVGSGKVLLALSGGVDSSVLAALLNKAVGENLTCIFI---DHGLMRKNEG------ 277

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
           D  +A      +N      + + RF      V  P       GE                
Sbjct: 278 DEVEAAFANSEMN--FIRINAQSRFLGKLKGVSEPEKKRKIIGEEF-----------IRV 324

Query: 129 LLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                +++G  D LA G      +  G +G         +        F           
Sbjct: 325 FEEEAKKIGIVDFLAQGTIYADVVESGANGSAVIKSHHNVGGLPKNISFKSLIEPF---R 381

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
             F      K+ +R L  E+GL 
Sbjct: 382 TLF------KDEIRRLGLELGLP 398


>gi|315054853|ref|XP_003176801.1| argininosuccinate synthase [Arthroderma gypseum CBS 118893]
 gi|311338647|gb|EFQ97849.1| argininosuccinate synthase [Arthroderma gypseum CBS 118893]
          Length = 415

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 16/127 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ +V++A SGG+D+S + A L   G++V+                      +D  +A R
Sbjct: 3   QNEKVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAER 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               +      V D ++ F   +        A  E     +   R V    ++ V +Q G
Sbjct: 50  KALAVGAKKLVVEDLKKEFVEDLCFKAIQCNAIWEDRY--LLGARPVIARAMMRVAQQEG 107

Query: 138 ADVLATG 144
              ++ G
Sbjct: 108 CTAVSHG 114


>gi|289168181|ref|YP_003446450.1| GMP-synthase [Streptococcus mitis B6]
 gi|288907748|emb|CBJ22585.1| GMP-synthase [Streptococcus mitis B6]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|262165079|ref|ZP_06032816.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus VM223]
 gi|262024795|gb|EEY43463.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus VM223]
          Length = 491

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 193 NDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 244

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +    + P         V        +
Sbjct: 245 -------DKFGLNIIKVDAEERF--------LKALEGIDEPEAKRKTIGRVFVEVFDEES 289

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 290 KKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLVEPL 342

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 343 RELFKDEVRKIGLELGLP 360


>gi|123966991|ref|YP_001012072.1| PP family ATPase [Prochlorococcus marinus str. MIT 9515]
 gi|123201357|gb|ABM72965.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. MIT 9515]
          Length = 252

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V VA SGGVDS++VA+L     G   I VT                 A   + +A+    
Sbjct: 7   VCVAYSGGVDSTLVASLAFEQLGSKAIAVT-----------GVSPALAKTLLDEAKSQAK 55

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADV 140
            I ++H   +  E  +        SSY+       C  C + + K +  L  +++L   +
Sbjct: 56  WIGINHLEIETSELDQ--------SSYSK-NPKNRCFACKKELHKHTTYL--SKKLNYKI 104

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G      + + D G  R  +    D            +   L    F      K+ +
Sbjct: 105 VCDG------VNLDDLGDYRPGIKAAKDAG--------VVSP--LAKFNF-----TKKDI 143

Query: 201 RDLAREMGLDIADKS 215
           RD++R +G    DK 
Sbjct: 144 RDISRALGFPWWDKP 158


>gi|225850164|ref|YP_002730398.1| glutamine-dependent NAD+ synthetase [Persephonella marina EX-H1]
 gi|225645778|gb|ACO03964.1| glutamine-dependent NAD+ synthetase [Persephonella marina EX-H1]
          Length = 574

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 48/215 (22%)

Query: 22  RVVVAMSGGVDSSVVA-----ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +VV+ +SGG+DSS+ A     AL K    +V GV +                + + V DA
Sbjct: 318 KVVIGLSGGIDSSLTATIATDALGKD---NVKGVLM-----------PSQFTSKESVEDA 363

Query: 77  RRVCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLS 131
             + + + +      + D  E++++ +   F     AG  P    + N    ++ + L++
Sbjct: 364 LELAENLGIETFTLPITDIFEKYKDELKDIF-----AGLKPD-ATEENLQARIRGNLLMA 417

Query: 132 VTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA-------- 179
           ++ + G  VLATG+     +      GD      ++    D+ + + Y L          
Sbjct: 418 LSNKFGWIVLATGNKSEMSVGYATLYGDMVGGFAVLK---DVLKTKVYELAQYRNSISPV 474

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADK 214
             Q+ L     P     K   RD    +   I D+
Sbjct: 475 IPQRVLEK---PPSAELKPDQRDEDELLPYPILDE 506


>gi|53719738|ref|YP_108724.1| GMP synthase [Burkholderia pseudomallei K96243]
 gi|76810657|ref|YP_333938.1| GMP synthase [Burkholderia pseudomallei 1710b]
 gi|81379520|sp|Q63T42|GUAA_BURPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206797|sp|Q3JR65|GUAA_BURP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52210152|emb|CAH36130.1| GMP synthase [glutamine-hydrolyzing] [Burkholderia pseudomallei
           K96243]
 gi|76580110|gb|ABA49585.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1710b]
          Length = 547

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 233 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 290

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 291 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 326

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 327 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 379

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 380 RDLFKDEVRELGVALGLP 397


>gi|237812771|ref|YP_002897222.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia pseudomallei MSHR346]
 gi|237505145|gb|ACQ97463.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia pseudomallei MSHR346]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 283 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 319 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|227486136|ref|ZP_03916452.1| PP-loop family ATPase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235900|gb|EEI85915.1| PP-loop family ATPase [Anaerococcus lactolyticus ATCC 51172]
          Length = 270

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 28/136 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  RV VA+SGG DS ++A L   L + G   +DV  +++           +      ++
Sbjct: 35  EGDRVGVAISGGKDSLILAKLIEELHKHGPVDFDVEYLSM-----DPGYDEENLELLKKN 89

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +         + +   ++D      + V     S   A +   PC  C   ++   L + 
Sbjct: 90  LAY-------LQIPGKIYD------SRVFD--ISETLA-DGGNPCYLC-ARMRRGFLYAK 132

Query: 133 TRQLGADVLATGHYIR 148
            ++LG + LA GH++ 
Sbjct: 133 AKELGCNKLALGHHLN 148


>gi|254492519|ref|ZP_05105691.1| argininosuccinate synthase [Methylophaga thiooxidans DMS010]
 gi|224462411|gb|EEF78688.1| argininosuccinate synthase [Methylophaga thiooxydans DMS010]
          Length = 403

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+             Y+S   +        G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDK-----------YDSEVVT-FTADLGQGEEVEPARAKAK 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++ +   ++ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  SLGIKEIFIEDLREEFARDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 107

Query: 134 RQLGADVLATG 144
           R+ GA+ ++ G
Sbjct: 108 RETGAEAVSHG 118


>gi|325285735|ref|YP_004261525.1| Argininosuccinate synthase [Cellulophaga lytica DSM 7489]
 gi|324321189|gb|ADY28654.1| Argininosuccinate synthase [Cellulophaga lytica DSM 7489]
          Length = 394

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+S  A  L K  G++V  V                    Q++ + ++  
Sbjct: 3   KLVLAYSGGLDTSYCAKYLSKDKGFEVHAV-----------SVNTGGFTKQEISNIKKKA 51

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
             +  S Y   D  + F   V+              P  V   R V+  ++++  +++GA
Sbjct: 52  IELGASSYTSIDAVQTFYTKVVKYLIFGNVLKNNTYPLSVSAERIVQAIEIVNHAKKIGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 KYIAHG 117


>gi|257792558|ref|YP_003183164.1| NAD+ synthetase [Eggerthella lenta DSM 2243]
 gi|317488850|ref|ZP_07947380.1| NAD synthase [Eggerthella sp. 1_3_56FAA]
 gi|325832788|ref|ZP_08165551.1| NAD+ synthase [Eggerthella sp. HGA1]
 gi|257476455|gb|ACV56775.1| NAD+ synthetase [Eggerthella lenta DSM 2243]
 gi|316911924|gb|EFV33503.1| NAD synthase [Eggerthella sp. 1_3_56FAA]
 gi|325485927|gb|EGC88388.1| NAD+ synthase [Eggerthella sp. HGA1]
          Length = 280

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 41/189 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSS+VA +     G D V GV +            G       V DA  + 
Sbjct: 34  VVIGLSGGMDSSLVAVMCADALGADRVHGVLM-----------PGPYSTDHSVDDALDLA 82

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             + +        E +R        +    G+ + L   +     +   L++++   G  
Sbjct: 83  RNLGIRTRTVSIAEPYRA--FEAALAEACGGKLSGLAAENTQARCRMVCLMALSNAYGWM 140

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++ TG                          + ++   ++T          P+G + K  
Sbjct: 141 LVNTG-------------------------NKSEAMMGYSTLYGDTAGAFAPIGGLYKTD 175

Query: 200 VRDLAREMG 208
           V  +AR   
Sbjct: 176 VFAVARWRN 184


>gi|139473722|ref|YP_001128438.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pyogenes str. Manfredo]
 gi|226739752|sp|A2RED2|GUAA_STRPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|134271969|emb|CAM30207.1| GMP synthase [Streptococcus pyogenes str. Manfredo]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|50914254|ref|YP_060226.1| GMP synthase [Streptococcus pyogenes MGAS10394]
 gi|73919721|sp|Q5XC20|GUAA_STRP6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50903328|gb|AAT87043.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pyogenes
           MGAS10394]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|15827742|ref|NP_302005.1| argininosuccinate synthase [Mycobacterium leprae TN]
 gi|221230219|ref|YP_002503635.1| argininosuccinate synthase [Mycobacterium leprae Br4923]
 gi|21263437|sp|Q9CC10|ASSY_MYCLE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|13093294|emb|CAC30363.1| arginosuccinate synthase [Mycobacterium leprae]
 gi|219933326|emb|CAR71507.1| arginosuccinate synthase [Mycobacterium leprae Br4923]
          Length = 399

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+++A SGG+D+SV    + K   ++V+ V + L               G+D+   R+  
Sbjct: 5   RIILAYSGGLDTSVAINWIGKETSHEVVAVVIDL------------GQGGEDMEVVRQRA 52

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L++  R  G 
Sbjct: 53  LDCGAVEAIVVDARDEFAEGYCLPTVLNNALYMDRYPLVSAISRPLIVKHLVAAARAHGG 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--K 196
            ++A G                    +  D  R +  F       ++     P+ D    
Sbjct: 113 SIVAHG-----------------CTGKGNDQVRFEVGFASLAPDLEI---LAPVRDYAWT 152

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  + I     S
Sbjct: 153 REKAIAFAEENAIPINVTKRS 173


>gi|317404195|gb|EFV84633.1| GMP synthase [Achromobacter xylosoxidans C54]
          Length = 530

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ +  G  +  V     +       +G           +   +
Sbjct: 228 VILGLSGGVDSSVAAALIHKAIGDQLTCVF---VDHGLLRLDEGKQVM-------QTFAE 277

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137
            + V     D   +F      V  P A     G   +                   +Q  
Sbjct: 278 NMGVKIIHVDATAQFMGKLSGVADPEAKRKIIGREFVEV-----------FQEQAGKQKS 326

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +        +    +           +          L  PL ++ K
Sbjct: 327 AKWLAQGTIYPDVIESAGAKTGKATSIKSHHN-------VGGLPDTLNLQLLEPLRELFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 380 DEVRELGVALGLP 392


>gi|313157073|gb|EFR56503.1| NAD+ synthase [Alistipes sp. HGB5]
          Length = 526

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           +V +A R    D        +  + +SGG+DS+VVA L      D +G       + +A 
Sbjct: 250 MVYQAARCGLRDFFLKNGYKKACIGLSGGIDSAVVACLAA----DALGA-----GNVRAL 300

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV 100
                  +   V DA+++ + + + + V    E + + V
Sbjct: 301 LLPSQFSSDHSVEDAKKLAENLGIEYNVIPITEIYTSVV 339


>gi|255534705|ref|YP_003095076.1| GMP synthase [Flavobacteriaceae bacterium 3519-10]
 gi|255340901|gb|ACU07014.1| GMP synthase (glutamine-hydrolyzing) [Flavobacteriaceae bacterium
           3519-10]
          Length = 509

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 72/222 (32%), Gaps = 72/222 (32%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYNS 57
           ++ +     +V++ +SGGVDSSV A L+ R  G  +  +               ++ Y  
Sbjct: 205 EIKEKVGQHKVILGLSGGVDSSVAAVLIHRAIGDQLQCIFVDTGLLRKEEAEKVMKNYGE 264

Query: 58  R--------KASKRKGSCCAG-QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108
                     A  R  S   G  D  + R++   I     V   EE  +        + +
Sbjct: 265 HFKLKIKLIDAKDRFLSKLKGISDPEEKRKI---IGNEFVVVFDEESHKIE-----GAKF 316

Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168
            A  T  P V  +++VK           G   +   H+    L    D +          
Sbjct: 317 LAQGTIYPDVIESQSVK-----------GPSAVIKSHHNVGGLPAEMDFE---------- 355

Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                              L  PL ++ K+ VR +  E+G+ 
Sbjct: 356 -------------------LLEPLRELFKDEVRKVGEELGIP 378


>gi|198471025|ref|XP_002133639.1| GA22702 [Drosophila pseudoobscura pseudoobscura]
 gi|198145731|gb|EDY72266.1| GA22702 [Drosophila pseudoobscura pseudoobscura]
          Length = 129

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 18/77 (23%)

Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALE-----------------GDIVHLN-GQIL 253
           A K +S  ICFV +  +   ++     I+                   G  V ++ G I+
Sbjct: 28  AHKRESTCICFVGKRDFKSFIREAIPYISSPLPVLKPSLSLHYIASRSGQFVDIDSGAIV 87

Query: 254 GRHNGIINYTIGQRRGL 270
           G H  I  +T+GQR  L
Sbjct: 88  GTHEVIHQWTVGQRCRL 104


>gi|126465307|ref|YP_001040416.1| PP-loop domain-containing protein [Staphylothermus marinus F1]
 gi|126014130|gb|ABN69508.1| PP-loop domain protein [Staphylothermus marinus F1]
          Length = 310

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 28/203 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV++ +SGG DS V+A +L +   + IG  L L +              + V   R+
Sbjct: 33  RGDRVLLGLSGGKDSVVLAYILSKL-RETIGFKLYLTHLNLGIGEYS----KKTVEIVRK 87

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + + IN    + D  E     +      +      P PC  C   VK   L ++  +L A
Sbjct: 88  ISEKINAPLIILDLREILSIGIPELALKT----RRP-PCSVCG-VVKRYLLNALAVELKA 141

Query: 139 DVLATGHYIR------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           D +ATGH +        R ++  + ++   +   ++   D            L     PL
Sbjct: 142 DSIATGHNLDDMVTFILREFLVQNLEQIPKLAPRIEGAEDY-----------LATKIKPL 190

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
            +  +E ++  A    +D  ++ 
Sbjct: 191 YETYEEDIKKYAELNNIDYVEEK 213


>gi|167816341|ref|ZP_02448021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 91]
 gi|254189258|ref|ZP_04895769.1| GMP synthase [Burkholderia pseudomallei Pasteur 52237]
 gi|254259268|ref|ZP_04950322.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1710a]
 gi|157936937|gb|EDO92607.1| GMP synthase [Burkholderia pseudomallei Pasteur 52237]
 gi|254217957|gb|EET07341.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1710a]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 283 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 319 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|325294837|ref|YP_004281351.1| PP-loop domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065285|gb|ADY73292.1| PP-loop domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 312

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 30/192 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSS---VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           + +   KD +V++A+SGG DS         L   GY   G  + L         +G   +
Sbjct: 45  EFNMFSKDEKVLIAVSGGKDSLSLWYALHRL---GYKTYGFHISL-------GIEGWEYS 94

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSD 128
            + +   ++  + I     +FD ++ F            A G      C  C    ++  
Sbjct: 95  KKSLDICKKFSERIERPLIIFDIKDEF-----GYSIEEIAKGSGRKDVCSVCGTFKRY-L 148

Query: 129 LLSVTRQLGADVLATGHYI----------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
           +  + ++ G  V+ATGH +            R  +G  G++  ++       R    F+F
Sbjct: 149 MNKICKEQGFKVVATGHNLDDESALLLSNTIRWEIGYLGRQHPVLPEKNGFARKVKPFVF 208

Query: 179 ATTQQQLCDLRF 190
            T ++ +     
Sbjct: 209 FTEKEIVSYAIL 220


>gi|306819006|ref|ZP_07452723.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35239]
 gi|307700340|ref|ZP_07637380.1| argininosuccinate synthase [Mobiluncus mulieris FB024-16]
 gi|304648199|gb|EFM45507.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35239]
 gi|307614551|gb|EFN93780.1| argininosuccinate synthase [Mobiluncus mulieris FB024-16]
          Length = 411

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 17/129 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDAR 77
             R+V+A SGG+D+SV    +K     +VI V                C   G+D+   R
Sbjct: 3   KKRIVLAYSGGLDTSVAIGWMKEKLDVEVIAV-------------SVDCGQGGEDLQVIR 49

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +       V  YV D ++ F N   +P   +    E   P V   +R +    L+   +Q
Sbjct: 50  QRALDCGAVEAYVADAKDEFANDYCMPALRTNGLYEGKYPLVSALSRPLISKHLVMAAKQ 109

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 110 FGATTMAHG 118


>gi|255307424|ref|ZP_05351595.1| hypothetical protein CdifA_12587 [Clostridium difficile ATCC 43255]
          Length = 286

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 23/131 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  ++ VA+SGG DS ++A +   LK+ G  V       ++    +   G     + +  
Sbjct: 52  EGDKIAVAISGGKDSILMAKMFQELKKHG-QV------NFDIEFIAMDPGYHANIRQLL- 103

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+ +N+  ++FD    F   +    A  Y       PC  C   ++   L S   +
Sbjct: 104 -IDNCEYLNIPIHLFD-SRIF--EIADEIAKDY-------PCYMC-ARMRRGALYSKAEE 151

Query: 136 LGADVLATGHY 146
           LG + LA GH+
Sbjct: 152 LGCNKLALGHH 162


>gi|225621479|ref|YP_002722738.1| bifunctional GMP synthase/glutamine amidotransferase [Brachyspira
           hyodysenteriae WA1]
 gi|254800088|sp|C0QYF1|GUAA_BRAHW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225216300|gb|ACN85034.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Brachyspira hyodysenteriae WA1]
          Length = 514

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 26/192 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V++ +SGGVDSSV A L+++     IG  L+         RK       +V+     
Sbjct: 217 DKNVILGLSGGVDSSVAAVLIEKA----IGKQLKCIFVNNGLLRKDEDKKVVEVFR---- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
            D  N+     D  +RF + +                 V  +  V  S      +++   
Sbjct: 269 -DNFNIDLIYVDASKRFLDKLAGVTDPEQKRK------VIGHEFV--SVFNDEAKKIENV 319

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G        +  D      +     + +   + +    +    +L  P  ++ K+
Sbjct: 320 GFLAQG-------TLYPDVIESVSLRGSSAVIKSH-HNVGGLPKDMKFELLEPFRELFKD 371

Query: 199 SVRDLAREMGLD 210
            VR++  E+ L 
Sbjct: 372 EVREIGLELKLP 383


>gi|94988651|ref|YP_596752.1| GMP synthase [Streptococcus pyogenes MGAS9429]
 gi|94992475|ref|YP_600574.1| GMP synthase [Streptococcus pyogenes MGAS2096]
 gi|226739748|sp|Q1JBM8|GUAA_STRPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739749|sp|Q1JLL1|GUAA_STRPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94542159|gb|ABF32208.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS9429]
 gi|94545983|gb|ABF36030.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS2096]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|45358457|ref|NP_988014.1| GMP synthase subunit B [Methanococcus maripaludis S2]
 gi|50400320|sp|Q6LYU3|GUAAB_METMP RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|44921215|emb|CAF30450.1| GMP synthase (glutamine-hydrolyzing) [Methanococcus maripaludis S2]
          Length = 310

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   + + ++A+SGGVDS+V A L  R  G  ++ V            RK       
Sbjct: 14  EIRKQINNRKTIIALSGGVDSAVAAVLTDRAVGDKLLAVY-----VDTGLMRKNESEEIW 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            ++      + + ++  + + ++ F      VI P       G   +             
Sbjct: 69  KIFK-----EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLFIEV----------- 112

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V  + G +VL  G      +      K    +  P  +  D               +
Sbjct: 113 FEKVAEEQGEEVLVQGTIAPDWIESEGQIKTHHNIALPGGMVLD---------------V 157

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR LA  +GL 
Sbjct: 158 VEPLRELYKDEVRLLAVALGLP 179


>gi|15675169|ref|NP_269343.1| GMP synthase [Streptococcus pyogenes M1 GAS]
 gi|19746136|ref|NP_607272.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pyogenes MGAS8232]
 gi|56808413|ref|ZP_00366163.1| COG0519: GMP synthase, PP-ATPase domain/subunit [Streptococcus
           pyogenes M49 591]
 gi|71903556|ref|YP_280359.1| GMP synthase [Streptococcus pyogenes MGAS6180]
 gi|71910732|ref|YP_282282.1| GMP synthase [Streptococcus pyogenes MGAS5005]
 gi|94994464|ref|YP_602562.1| GMP synthase [Streptococcus pyogenes MGAS10750]
 gi|209559474|ref|YP_002285946.1| GMP synthase [Streptococcus pyogenes NZ131]
 gi|54037233|sp|P64300|GUAA_STRP8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041337|sp|P64299|GUAA_STRP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206834|sp|Q48TF6|GUAA_STRPM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739751|sp|Q1J6G5|GUAA_STRPF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739755|sp|B5XLN9|GUAA_STRPZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13622332|gb|AAK34064.1| putative GMP synthase [Streptococcus pyogenes M1 GAS]
 gi|19748312|gb|AAL97771.1| putative GMP synthase [Streptococcus pyogenes MGAS8232]
 gi|71802651|gb|AAX72004.1| glutamine-hydrolyzing GMP synthase [Streptococcus pyogenes
           MGAS6180]
 gi|71853514|gb|AAZ51537.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS5005]
 gi|94547972|gb|ABF38018.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS10750]
 gi|209540675|gb|ACI61251.1| GMP synthase - glutamine-hydrolyzing [Streptococcus pyogenes NZ131]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|306827317|ref|ZP_07460604.1| GMP synthase [Streptococcus pyogenes ATCC 10782]
 gi|304430464|gb|EFM33486.1| GMP synthase [Streptococcus pyogenes ATCC 10782]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D  +RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|227875730|ref|ZP_03993858.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35243]
 gi|269976721|ref|ZP_06183697.1| argininosuccinate synthase [Mobiluncus mulieris 28-1]
 gi|227843672|gb|EEJ53853.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35243]
 gi|269935086|gb|EEZ91644.1| argininosuccinate synthase [Mobiluncus mulieris 28-1]
          Length = 411

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 17/129 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDAR 77
             R+V+A SGG+D+SV    +K     +VI V                C   G+D+   R
Sbjct: 3   KKRIVLAYSGGLDTSVAIGWMKEKLDVEVIAV-------------SVDCGQGGEDLQVIR 49

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +       V  YV D ++ F N   +P   +    E   P V   +R +    L+   +Q
Sbjct: 50  QRALDCGAVEAYVADAKDEFANDYCMPALRTNGLYEGKYPLVSALSRPLISKHLVMAAKQ 109

Query: 136 LGADVLATG 144
            GA  +A G
Sbjct: 110 FGATTMAHG 118


>gi|167619625|ref|ZP_02388256.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia thailandensis Bt4]
 gi|257138790|ref|ZP_05587052.1| GMP synthase [Burkholderia thailandensis E264]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 283 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 319 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|222823734|ref|YP_002575308.1| ExsB family transcriptional regulator [Campylobacter lari RM2100]
 gi|222538956|gb|ACM64057.1| transcriptional regulator, ExsB family [Campylobacter lari RM2100]
          Length = 221

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 28/195 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + +  K   C         ++C
Sbjct: 2   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYNQRTMLKERECFN-------KIC 51

Query: 81  DTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----NRTVKF--SDLLSVT 133
           + +N+   Y+ D    F   +     +     E P   +      N  V F     LS+ 
Sbjct: 52  EKLNIKTKYILDVS--FIANIGGNSLTD-LNLEIPKEKLHEKEVPNTYVPFRNGIFLSIA 108

Query: 134 RQLGADVLATGHYIRSRL--YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
                  +A      S     V +D       C    +++   +    TT+     ++ P
Sbjct: 109 -----GAIAEKEKCESIFIGVVQEDSSGYPD-CSANFIQKASEFINEGTTKTCNVAIKTP 162

Query: 192 LGDMKKESVRDLARE 206
           L  + K  + +LA +
Sbjct: 163 LVHLSKGQIVELALK 177


>gi|296164555|ref|ZP_06847126.1| argininosuccinate synthase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900155|gb|EFG79590.1| argininosuccinate synthase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 399

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++A SGG+D+SV    + K  G +V+ V + L               G+D+   R+  
Sbjct: 4   RVILAYSGGLDTSVAISWIGKETGREVVAVAIDL------------GQGGEDMEVVRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   S A      P V   +R +    L++  R+ G 
Sbjct: 52  LDCGAVEAVVVDARDEFAEGYCLPTILSNALYMDRYPLVSAISRPLIAKHLVAAAREHGG 111

Query: 139 DVLATG 144
            ++A G
Sbjct: 112 SIVAHG 117


>gi|156057843|ref|XP_001594845.1| argininosuccinate synthetase [Sclerotinia sclerotiorum 1980]
 gi|154702438|gb|EDO02177.1| argininosuccinate synthetase [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 412

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V +A SGG+D+S + A L   GYDV+   +                  +D   A+  
Sbjct: 3   KDKVCLAYSGGLDTSCILAWLIEKGYDVV-CFMA------------DVGQEEDFEAAKAK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              I  V+ YV D +  F + +  P     A  E          R V     + V ++ G
Sbjct: 50  ALKIGAVACYVEDLKREFVDELCFPAVQCNAIYENVYLLGTSLARPVIARAQIDVAQKEG 109

Query: 138 ADVLATG 144
              ++ G
Sbjct: 110 CIAVSHG 116


>gi|53723708|ref|YP_103163.1| GMP synthase [Burkholderia mallei ATCC 23344]
 gi|67641679|ref|ZP_00440448.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia mallei GB8 horse
           4]
 gi|121601427|ref|YP_993337.1| GMP synthase [Burkholderia mallei SAVP1]
 gi|124385687|ref|YP_001029226.1| GMP synthase [Burkholderia mallei NCTC 10229]
 gi|126439536|ref|YP_001059434.1| GMP synthase [Burkholderia pseudomallei 668]
 gi|126448173|ref|YP_001080843.1| GMP synthase [Burkholderia mallei NCTC 10247]
 gi|126455031|ref|YP_001066714.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 1106a]
 gi|167000587|ref|ZP_02266398.1| GMP synthase [Burkholderia mallei PRL-20]
 gi|167720125|ref|ZP_02403361.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei DM98]
 gi|167830039|ref|ZP_02461510.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 9]
 gi|167846262|ref|ZP_02471770.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei B7210]
 gi|167894841|ref|ZP_02482243.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 7894]
 gi|167903231|ref|ZP_02490436.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167919478|ref|ZP_02506569.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei BCC215]
 gi|226200092|ref|ZP_03795638.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315579|ref|ZP_04814595.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1106b]
 gi|254178353|ref|ZP_04885008.1| GMP synthase [Burkholderia mallei ATCC 10399]
 gi|254200114|ref|ZP_04906480.1| GMP synthase [Burkholderia mallei FMH]
 gi|254206452|ref|ZP_04912804.1| GMP synthase [Burkholderia mallei JHU]
 gi|81604845|sp|Q62JF6|GUAA_BURMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738402|sp|A3MKQ7|GUAA_BURM7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738403|sp|A2SBA7|GUAA_BURM9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738404|sp|A1V534|GUAA_BURMS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738405|sp|A3NWJ3|GUAA_BURP0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738406|sp|A3NAR3|GUAA_BURP6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52427131|gb|AAU47724.1| GMP synthase [Burkholderia mallei ATCC 23344]
 gi|121230237|gb|ABM52755.1| GMP synthase [Burkholderia mallei SAVP1]
 gi|124293707|gb|ABN02976.1| GMP synthase [Burkholderia mallei NCTC 10229]
 gi|126219029|gb|ABN82535.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           668]
 gi|126228673|gb|ABN92213.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1106a]
 gi|126241043|gb|ABO04136.1| GMP synthase [Burkholderia mallei NCTC 10247]
 gi|147749710|gb|EDK56784.1| GMP synthase [Burkholderia mallei FMH]
 gi|147753895|gb|EDK60960.1| GMP synthase [Burkholderia mallei JHU]
 gi|160699392|gb|EDP89362.1| GMP synthase [Burkholderia mallei ATCC 10399]
 gi|225927776|gb|EEH23817.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522636|gb|EEP86079.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia mallei GB8 horse
           4]
 gi|242138818|gb|EES25220.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1106b]
 gi|243063515|gb|EES45701.1| GMP synthase [Burkholderia mallei PRL-20]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 283 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 319 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|325202116|gb|ADY97570.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240149]
          Length = 426

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KICVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|306829399|ref|ZP_07462589.1| GMP synthase [Streptococcus mitis ATCC 6249]
 gi|304428485|gb|EFM31575.1| GMP synthase [Streptococcus mitis ATCC 6249]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIEMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGISDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|153807599|ref|ZP_01960267.1| hypothetical protein BACCAC_01881 [Bacteroides caccae ATCC 43185]
 gi|149129961|gb|EDM21173.1| hypothetical protein BACCAC_01881 [Bacteroides caccae ATCC 43185]
          Length = 507

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 29/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +VV+ +SGGVDSSV A LL R  G ++  +     +     K +              
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF---VDHGMLRKNEFKNVMNDY------ 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + ++    D  E+F             AG T  P  +  R +     + V   + A
Sbjct: 264 --ECLGLNVIGVDASEQFFAE---------LAGVT-EP--EGKRKIIGKGFIDV-FDVEA 308

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +    ++       D  +   I    +    +    +    ++    L  PL  + K+
Sbjct: 309 HKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEPLRLLFKD 364

Query: 199 SVRDLAREMGLD 210
            VR + RE+G+ 
Sbjct: 365 EVRRVGRELGMP 376


>gi|34497449|ref|NP_901664.1| argininosuccinate synthase [Chromobacterium violaceum ATCC 12472]
 gi|44887696|sp|Q7NWJ5|ASSY_CHRVO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|34103304|gb|AAQ59666.1| argininosuccinate synthase [Chromobacterium violaceum ATCC 12472]
          Length = 408

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 66/202 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G++V  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDE-YQCEVVTF-----------TADIGQGEEVEPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  VSLGIKPENIFIEDLREEFVRDFVYPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +  Q+GAD ++ G                           DQ              +RF
Sbjct: 107 EIANQVGADAVSHG---------------------ATGKGNDQ--------------VRF 131

Query: 191 PLGDM-KKESVRDLA--REMGL 209
            LG    K  V+ +A  RE  L
Sbjct: 132 ELGYYALKPDVKVIAPWREWDL 153


>gi|330340409|ref|NP_001193365.1| GMP synthase [Bos taurus]
 gi|296491166|gb|DAA33239.1| guanine monphosphate synthetase [Bos taurus]
          Length = 699

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 244 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 292

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            R    + +   V +    F N              TP   +             R +  
Sbjct: 293 LR---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 347

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 348 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 402

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 403 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 435


>gi|296109387|ref|YP_003616336.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus
           infernus ME]
 gi|295434201|gb|ADG13372.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus
           infernus ME]
          Length = 241

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 55/225 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V++A SGGVDS ++A LL R    V  V ++                     DA+ 
Sbjct: 18  KGKKVILAFSGGVDSLILAILLSRV-AKVKCVFIK-----------TPYIHKYKEEDAKA 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +    N      D E  + + ++           + L C  C +   FS L  +  +L  
Sbjct: 66  LAKKFN-----LDLEILYVDKIVE---------NSKLRCYHCKKMF-FSILNKMKEELSY 110

Query: 139 DVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           D++  G HY        DD    R   + ++     S F                  ++K
Sbjct: 111 DLVVDGTHY--------DDLFEDRPGLKALEELNISSPFAEFK--------------VRK 148

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
             +  LA+++ ++I      ++ C + +       K +    ALE
Sbjct: 149 GDILKLAKDLNINIP-----KETCLLTRFDRDVDEKELRKVEALE 188


>gi|268317933|ref|YP_003291652.1| asparagine synthase (glutamine-hydrolyzing) [Rhodothermus marinus
           DSM 4252]
 gi|262335467|gb|ACY49264.1| asparagine synthase (glutamine-hydrolyzing) [Rhodothermus marinus
           DSM 4252]
          Length = 554

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV V +SGGVDS+++A  L   G +V G                      DV   +R+
Sbjct: 248 QRRVAVLLSGGVDSTLLAKALVDRGLEVTG-------------YCVGQPEASDVQLVKRL 294

Query: 80  CDTINVSHYVFDYEER 95
             T+ +S +V +    
Sbjct: 295 ARTLGLSVHVTELTPE 310


>gi|256810699|ref|YP_003128068.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
 gi|256793899|gb|ACV24568.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
          Length = 303

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-----SKRKGSCCAGQDVY 74
           D+++ + +SGG DS  +A +LK+         L  +                    +   
Sbjct: 45  DVKIGIGISGGKDSLAMAYILKK---------LFNHIPNAELICFFVDEGIEGFREKAKE 95

Query: 75  DARRVCDTINVSHYVFDYEER----FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             +  C    +   V  + +         V   + +    G+   PC  C    ++  L 
Sbjct: 96  YIKDFCKEQGLELKVIKFRDEIGHTLDEIVKNNYLTKLNIGK---PCSFCGVVRRY-LLN 151

Query: 131 SVTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               + G D LA GH    + ++ L    +G  + I+    + E            +   
Sbjct: 152 KYALKEGCDYLAIGHNLDDFCQTILMNYVEGNIKNIIQFGKEFE-----------GEGFV 200

Query: 187 DLRFPLGDMKKESVRDLA 204
               PL  + ++ VR  A
Sbjct: 201 KRIKPLKLIPEDEVRLYA 218


>gi|220918056|ref|YP_002493360.1| NAD+ synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955910|gb|ACL66294.1| NAD+ synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 323

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 72/216 (33%), Gaps = 44/216 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV MSGG+DSSVVA+L  R  G D V+G+ +     R +S        G  +   R +  
Sbjct: 36  VVGMSGGIDSSVVASLCVRALGADRVVGLLM---PERDSS--------GDALRLGRMLAA 84

Query: 82  TINVSHYVFDYEERFRN--------AVIVPFASSYAAG---ETPLPCVDCNRTVKFSDL- 129
            + + H V D                 I      Y  G   +  LP +     +  + L 
Sbjct: 85  HLGIRHVVEDIAPALEGLGCYARQLEAIRMAVPEYGDGWRCKLTLPSLLEGERLNITSLT 144

Query: 130 -------LSVTRQLGADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSY 175
                      R   A  L    AT    R+R  +      R          R   DQ +
Sbjct: 145 VSDPRGTQRTVRMPPAAYLQMVAATNFKQRTRKMMEYYHADRLNYAVAGTPNRLEYDQGF 204

Query: 176 FLFATTQQQLCDLRF-PLGDMKKESVRDLAREMGLD 210
           F+            F P+  + K  V  LA  +G+ 
Sbjct: 205 FVKQGDGA----ADFKPIAHLYKTQVYALAEHLGVP 236


>gi|164688047|ref|ZP_02212075.1| hypothetical protein CLOBAR_01692 [Clostridium bartlettii DSM
           16795]
 gi|164602460|gb|EDQ95925.1| hypothetical protein CLOBAR_01692 [Clostridium bartlettii DSM
           16795]
          Length = 265

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 60/240 (25%)

Query: 14  LDKNPKDM-RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQ--LYNSRKASKRKGS 66
           L    +DM +VV+A SGGVDS+    LLK      G + I VT+   +++ R+  +    
Sbjct: 10  LKSKLRDMGKVVIAYSGGVDSN---FLLKVASDELGQNAIAVTIHAMMHSDREMDE---- 62

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                    A+       V H V           +  F        +   C  C   V F
Sbjct: 63  ---------AKEYTKQFGVKHEVIK---------VDNFDEKGFIENSKKRCYYCKCAV-F 103

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           + +     +     +  G        + D G  R  +    +L                 
Sbjct: 104 NMIKDYAAKNDVKYVLDG------TNLSDLGDYRPGLKALEELN---------------- 141

Query: 187 DLRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            +  PL D  + KE +R L+  + L   +K      C   +  Y D + +    +  E +
Sbjct: 142 -VVSPLKDSGLTKEEIRILSHRLNLKTYNKPSF--ACLASRIPYGDKITKEKLKLVEEAE 198


>gi|164427028|ref|XP_959751.2| GMP synthase [Neurospora crassa OR74A]
 gi|157071575|gb|EAA30515.2| GMP synthase [Neurospora crassa OR74A]
          Length = 537

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 64/203 (31%), Gaps = 40/203 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG   + +     +         Q   D +     
Sbjct: 229 VLGAVSGGVDSTVAAKLMKEA----IGD--RFWAVLVNNGVMRLDECEQVERDLK---QH 279

Query: 83  INVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLP--CVDCNRTVKFS 127
           + ++  V D  + F            +   I   F   + A    +        +  K  
Sbjct: 280 LGINLTVIDASKDFLEGLKGLHDPEQKRKFIGGKFIDVFEAEAQKIEEAAAKSGKGTKIG 339

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             L  T             I S  + G     +         ER         T  Q   
Sbjct: 340 FFLQGTL--------YPDVIESLSFKGPSATIKTHHNVGGLPER--------MTNGQGLQ 383

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR+L R +G+ 
Sbjct: 384 LIEPLRSLYKDEVRELGRTLGIH 406


>gi|83405734|gb|AAI11274.1| GMPS protein [Bos taurus]
          Length = 704

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 249 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 297

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            R    + +   V +    F N              TP   +             R +  
Sbjct: 298 LR---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 352

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 353 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 407

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 408 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 440


>gi|301318278|gb|ADK67054.1| GMP synthase [Pseudoxanthomonas dokdonensis]
          Length = 184

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFR---NAVIVP 103
             + + V     D  +R+      V  P
Sbjct: 86  -AEHMGVKVIRVDAADRYFSALEGVADP 112


>gi|255011863|ref|ZP_05283989.1| hypothetical protein Bfra3_22183 [Bacteroides fragilis 3_1_12]
 gi|313149698|ref|ZP_07811891.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138465|gb|EFR55825.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 249

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  +V+V +SGG DS  +  LL +        + V+ V   ++                 
Sbjct: 30  EGDKVLVGLSGGKDSLALVELLGKRSRIFKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D+   R   ++  V   V++           P   +  +     PC     NR      
Sbjct: 78  SDLDYLRAHAESYGVPLVVYETS-------FDPSTDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEQGCNKIALGHH 140


>gi|206900131|ref|YP_002251717.1| NH(3)-dependent NAD(+) synthetase [Dictyoglomus thermophilum
           H-6-12]
 gi|206739234|gb|ACI18292.1| NH(3)-dependent NAD(+) synthetase [Dictyoglomus thermophilum
           H-6-12]
          Length = 527

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           +  +  +   D  K     + V+ +SGG+DS++VA +     G D V+GV+L        
Sbjct: 255 LYNSLVMGLRDFIKKSGFRKAVIGLSGGIDSALVACIATEALGKDNVLGVSL-------- 306

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                   + + + DA+ +   + +   +    E F +     +       E P+  V  
Sbjct: 307 ---PSIYTSKESIEDAKILSQNLGIEFRIIPISEIFYS-----YLKELNPSEKPVMDVAE 358

Query: 121 NR---TVKFSDLLSVTRQLGADVLATGHYIRS 149
                 ++ + L+ ++ + G  +LATG+   +
Sbjct: 359 ENLQSRIRGNVLMFISNREGYLLLATGNRSEA 390


>gi|149185387|ref|ZP_01863703.1| exsB protein [Erythrobacter sp. SD-21]
 gi|148830607|gb|EDL49042.1| exsB protein [Erythrobacter sp. SD-21]
          Length = 238

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 14/73 (19%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS V AAL +  G+ +  +T+                  +++  A+ + + +
Sbjct: 13 VVLLSGGLDSMVTAALARERGHALHALTIDY-----------GQRHMRELQSAKSIAEKL 61

Query: 84 NVSHYV---FDYE 93
           V  +V    D  
Sbjct: 62 GVERHVELPLDLR 74


>gi|302338413|ref|YP_003803619.1| thiamine biosynthesis/tRNA modification protein ThiI [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635598|gb|ADK81025.1| thiamine biosynthesis/tRNA modification protein ThiI [Spirochaeta
           smaragdinae DSM 11293]
          Length = 404

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 51/207 (24%)

Query: 14  LDKNPKDMRV------VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           ++K P  + V      VV +SGG+DS V A L+ + G  +  V    Y            
Sbjct: 165 MEKGPGGLPVGCAGKGVVLLSGGIDSPVAAFLMAKRGLKLDAVYFHAYP----------Y 214

Query: 68  CAGQDVYDARRVCDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
            + + +   +++ + +      +  +V  + E     + +        G +    +  + 
Sbjct: 215 TSNEALDKVKKLAEILAPYTGGIRLHVIPFTE---AQIFMK-----QRGRS--EELTLHM 264

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
               + ++ +   + AD  A        L  G+           +     Q+      T 
Sbjct: 265 R---AAMVEIADMVAADTGA------KALVTGE----------ALSQVASQTIESITLTG 305

Query: 183 QQLCDLRF-PLGDMKKESVRDLAREMG 208
                  F P+  + KE +  +AR +G
Sbjct: 306 SFAQRPIFRPVIGLDKEEIITIARRIG 332


>gi|300865976|ref|ZP_07110712.1| Asparagine synthase [Oscillatoria sp. PCC 6506]
 gi|300336042|emb|CBN55870.1| Asparagine synthase [Oscillatoria sp. PCC 6506]
          Length = 593

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P D  V V +SGG+DSS+V ALL   G  V   +L                   ++  A+
Sbjct: 220 PIDEPVGVLLSGGIDSSLVTALLVEAGLQVRAYSLDF-----------GVEGYSELPYAQ 268

Query: 78  RVCDTINVSHYVF 90
           +V D + +     
Sbjct: 269 QVADFLQIPLVRV 281


>gi|237747034|ref|ZP_04577514.1| argininosuccinate synthase [Oxalobacter formigenes HOxBLS]
 gi|229378385|gb|EEO28476.1| argininosuccinate synthase [Oxalobacter formigenes HOxBLS]
          Length = 408

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     ++ D  E F    + P           Y  G +    +   R      L+
Sbjct: 53  LKFGIKPENIFIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LI 106

Query: 131 SVTRQLGADVLATG 144
            + RQ GAD +A G
Sbjct: 107 EIARQTGADAIAHG 120


>gi|124004150|ref|ZP_01688996.1| GMP synthase, C-terminal domain [Microscilla marina ATCC 23134]
 gi|123990220|gb|EAY29719.1| GMP synthase, C-terminal domain [Microscilla marina ATCC 23134]
          Length = 518

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +L     + +VV+ +SGGVDSSV A LL + 
Sbjct: 215 ELKAQIGNDKVVLGLSGGVDSSVAAVLLHQA 245


>gi|89891429|ref|ZP_01202935.1| GMP synthase [Flavobacteria bacterium BBFL7]
 gi|89516460|gb|EAS19121.1| GMP synthase [Flavobacteria bacterium BBFL7]
          Length = 511

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           L +   + +VV+ +SGGVDSSV A LL + 
Sbjct: 208 LQEKVGNDKVVLGLSGGVDSSVAAMLLHKA 237


>gi|262306013|gb|ACY45599.1| gln amidotransferase [Artemia salina]
          Length = 200

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
          ++ K   +M+V+V +SGGVDS+V AALL R 
Sbjct: 36 EIRKAVGNMKVLVLLSGGVDSTVCAALLTRA 66


>gi|220908689|ref|YP_002484000.1| hypothetical protein Cyan7425_3314 [Cyanothece sp. PCC 7425]
 gi|219865300|gb|ACL45639.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 275

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 55/220 (25%)

Query: 1   MVVSEATRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58
           MVV +  +L +L   +++       ++A SGG+DS++VA +     +DV+G      +  
Sbjct: 1   MVVDKLNQLKALFAQMERG------LIAYSGGIDSTLVAKIA----WDVLG------DRA 44

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPC 117
            A          +D+ DAR     I ++H +    E             Y +   P   C
Sbjct: 45  LAVTAVSPSLLPEDLEDARIQAAEIGIAHELVYTREMDNPN--------YRS--NPVNRC 94

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
             C   +    L  +  + G   +  G          DD +  R                
Sbjct: 95  YFCKSEL-HDTLKPLALERGYPYVVDG-------VNADDLQDYRP--------------- 131

Query: 178 FATTQQQLCDLRFPLGD--MKKESVRDLAREMGLDIADKS 215
                 Q    R PL +  + K  VR +A+ + L   DK 
Sbjct: 132 -GIQAAQERGARSPLAEVGVTKLEVRQMAKFLDLPWWDKP 170


>gi|171321379|ref|ZP_02910333.1| GMP synthase, large subunit [Burkholderia ambifaria MEX-5]
 gi|171093337|gb|EDT38531.1| GMP synthase, large subunit [Burkholderia ambifaria MEX-5]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGK--------------- 266

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G  T +   +  R +   + + V     ++
Sbjct: 267 ------MVLDMFEGRLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQAEAKK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 321 LSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 374 LFKDEVRELGVALGLP 389


>gi|172060937|ref|YP_001808589.1| GMP synthase [Burkholderia ambifaria MC40-6]
 gi|226738397|sp|B1YS44|GUAA_BURA4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171993454|gb|ACB64373.1| GMP synthase, large subunit [Burkholderia ambifaria MC40-6]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGK--------------- 266

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G  T +   +  R +   + + V     ++
Sbjct: 267 ------MVLDMFEGRLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQAEAKK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 321 LSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 374 LFKDEVRELGVALGLP 389


>gi|326470757|gb|EGD94766.1| argininosuccinate synthase [Trichophyton tonsurans CBS 112818]
          Length = 412

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 23/129 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V++A SGG+D+S + A L   G++V+                      +D  +A R
Sbjct: 3   QKEKVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAER 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQ 135
               +      V D ++ F   +                    +  R V    ++ V +Q
Sbjct: 50  KALAVGAKKLVVEDLKKEFVEDLCFKAIQC-------NTDTSSDDARPVIARAMMRVAQQ 102

Query: 136 LGADVLATG 144
            G   ++ G
Sbjct: 103 EGCTAVSHG 111


>gi|294056440|ref|YP_003550098.1| NAD+ synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615773|gb|ADE55928.1| NAD+ synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 547

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++ +SGG+DS+VV AL     G + VIG+               +  +     DA  +
Sbjct: 292 KALIGLSGGIDSAVVCALAAEAFGPENVIGI-----------ALPSAISSQHSRDDAAGL 340

Query: 80  CDTINVSHYVF 90
              + + ++  
Sbjct: 341 AQNLGIEYHEV 351


>gi|258515348|ref|YP_003191570.1| ExsB family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779053|gb|ACV62947.1| ExsB family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 268

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 83/239 (34%), Gaps = 47/239 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGG DS+    LL +   D +GV     +   A           ++ +A+ +   +
Sbjct: 23  MVAFSGGTDST----LLLKMVADTLGV-----DKVLAVTTVSPLLPAAELIEAKNLAKNM 73

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V+H      E      I         G +   C  C + +++S LL      G DV+  
Sbjct: 74  GVAHLTLSTGELNNRDFI---------GNSRERCYLC-KQIRYSKLLETAEIRGYDVILD 123

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G          +D    R   R +D        L   T  +          + K  +R L
Sbjct: 124 GTNA-------EDELDFRPGIRALDE-------LGVKTPLREA-------GLSKAEIRML 162

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR----HNG 258
           A+  GL+   K  +   C   +  Y   +   N  I  + +   L G  LG+    H+G
Sbjct: 163 AKTFGLNNWQKPSA--ACLASRIPYGITITEENLLIIEKAE-AFLKGLGLGQLRVRHHG 218


>gi|256831345|ref|YP_003160072.1| ExsB family protein [Jonesia denitrificans DSM 20603]
 gi|256684876|gb|ACV07769.1| ExsB family protein [Jonesia denitrificans DSM 20603]
          Length = 241

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          +V + +SGG DS  +   L   G++V+ +T     +   ++R            A  +  
Sbjct: 5  KVALLLSGGPDSVTLLYDLLAQGHEVVALTYNFGEAEAQNERDA----------ATAIAA 54

Query: 82 TINVSHYVFDYEERFRN 98
           + V H+ FD+    + 
Sbjct: 55 ELEVEHHFFDFSGPLKE 71


>gi|187940192|gb|ACD39320.1| hypothetical protein PACL_0661 [Pseudomonas aeruginosa]
          Length = 222

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 40/202 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVI--GVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +  ++VV  SGG+DS+V   L    G++V+  GV               +     ++  
Sbjct: 13  KEKRKIVVLHSGGLDSTVCLLLAHSRGHEVVSLGV-------------SYNQHHHVELDY 59

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVI--VPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
           A   C    +   +          VI      +    G +       N        L   
Sbjct: 60  AAAQCARYGIERKIVSVAWSKPARVIPKNRSMAEIKKGVSSAFLPGRN-----GIFLMLA 114

Query: 131 -SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC--D 187
            +    +GAD + TG           D       CRP  +      F    +        
Sbjct: 115 SAEAAGIGADEVWTG-------INSVDFSGYPD-CRPEFI----ESFRKMLSYAIPKGPK 162

Query: 188 LRFPLGDMKKESVRDLAREMGL 209
           L  PL    K  +  LA  +GL
Sbjct: 163 LSAPLQKKSKPQIAKLAHRLGL 184


>gi|167040443|ref|YP_001663428.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|256752475|ref|ZP_05493333.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914494|ref|ZP_07131810.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307724270|ref|YP_003904021.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854683|gb|ABY93092.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|256748677|gb|EEU61723.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889429|gb|EFK84575.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307581331|gb|ADN54730.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 235

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 32/132 (24%)

Query: 23  VVVAMSGGVDSSVV----AALLKR---DGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVY 74
           + V +SGG DS V       LLK    + ++V+G+ L L Y++   +  +  C       
Sbjct: 24  IAVGVSGGKDS-VTLLYGLHLLKNFYPEKFEVMGLMLTLGYDNFDPTPVENFCREK---- 78

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                     +  ++       +   I      Y   E   PC  C   ++   L +  +
Sbjct: 79  ---------GIPFFI-------KETDIKKIVFDYRKEE--NPCSLC-ANLRRGALNNFAK 119

Query: 135 QLGADVLATGHY 146
           + G + +A  H+
Sbjct: 120 EKGCNKVALAHH 131


>gi|113868007|ref|YP_726496.1| GMP synthase [Ralstonia eutropha H16]
 gi|122946825|sp|Q0KA43|GUAA_RALEH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113526783|emb|CAJ93128.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia eutropha H16]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +     + +G       V        
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRQDEGKLVMEMFVG------- 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F           + AG T     +  R +   + + V     R+L 
Sbjct: 275 RLHAKVVHIDASEQFL---------GHLAGVT---DPEQKRKIIGREFVEVFQAEARKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|18314221|ref|NP_560888.1| hypothetical protein PAE3646 [Pyrobaculum aerophilum str. IM2]
 gi|18161815|gb|AAL65070.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 298

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 83/243 (34%), Gaps = 45/243 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY--------DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + VA+SGG DS    ALLK   Y        +V  + + L          G   + +   
Sbjct: 38  IYVAVSGGKDSCAALALLKE--YVDSAKIDAEVKALHINL----------GFKTSDRVEE 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             + + + + VS +V   +               AA  T  P       VK   L  V R
Sbjct: 86  AVKTLANRLGVSLHVVHAK--------DYLDIEAAARATGRPICSVCGAVKRYLLNKVPR 137

Query: 135 QLGADVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERD-QSYFLFATTQQQLCDLRFP 191
           +LGA  +ATGH+       Y  +   R       +    D Q   L             P
Sbjct: 138 ELGATKVATGHHAHDFLAYYFKNLAGRHFEWNFKILPRLDGQGLILTRIRPLIFAR---P 194

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV---KRINAGIALE--GDIV 246
                 E   +L R +GL  ++      +C     + ++++   +R +    L+  G IV
Sbjct: 195 ------EENEELCRSLGLPFSEVCCEYGLCGAAHAEVYEMIYAARRRDPDFDLKLLGGIV 248

Query: 247 HLN 249
             N
Sbjct: 249 DFN 251


>gi|23465533|ref|NP_696136.1| GMP synthase [Bifidobacterium longum NCC2705]
 gi|44887966|sp|Q8G5P4|GUAA_BIFLO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|23326195|gb|AAN24772.1| GMP synthase glutamine amidotransferase [Bifidobacterium longum
           NCC2705]
          Length = 535

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 233 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 283

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 284 T-GIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 328

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 329 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 381

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 382 IEPLRTLFKDEVRAIGTELGLP 403


>gi|254197639|ref|ZP_04904061.1| GMP synthase [Burkholderia pseudomallei S13]
 gi|169654380|gb|EDS87073.1| GMP synthase [Burkholderia pseudomallei S13]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F   +       +     G   +               +  
Sbjct: 283 -------------VDASEQFLGHLAGVADPEHKRKIIGREFVEV-----------FQAEA 318

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +  G    ++    +           +    +     L  PL
Sbjct: 319 KKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEPL 371

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR+L   +GL 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|315169506|gb|EFU13523.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX1342]
          Length = 283

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQAKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|307594745|ref|YP_003901062.1| GMP synthase (glutamine-hydrolyzing) [Vulcanisaeta distributa DSM
           14429]
 gi|307549946|gb|ADN50011.1| GMP synthase (glutamine-hydrolyzing) [Vulcanisaeta distributa DSM
           14429]
          Length = 374

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 48/197 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V A+SGGVDS+  A L++R  G  +  V      ++L N     K          + D  
Sbjct: 22  VAAISGGVDSTTAAVLVRRAIGDRLRAVFIDTGFMRL-NEPAHVKEL--------LRDV- 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D  +RF   ++    +               R V +  L  V R+ G
Sbjct: 72  -------LPIEVIDARDRFYREMLGLSDAEEKRIRF--------REVFYEVLSGVAREYG 116

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC----DLRFPLG 193
            D L  G      +                   + Q   L       +      L  PL 
Sbjct: 117 CDWLVQGTIAPDWIET-------------RGGIKTQHNVLEQIGIDTVSKYGFKLIEPLR 163

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR+LA+ +G+ 
Sbjct: 164 ELYKDQVRELAKALGVP 180


>gi|302336809|ref|YP_003802015.1| NAD+ synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301633994|gb|ADK79421.1| NAD+ synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 552

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV + +SGG+DS++VA L     G + + V                  +   + DAR++ 
Sbjct: 290 RVHLGLSGGIDSALVATLAVEALGREQVRVF----------AMPSRYSSEGSLSDARKLA 339

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGA 138
           D + +S      E  F +++     + + AG  P    + N   +   LL  + + + G+
Sbjct: 340 DNLGISLETIPIEPMFVSSL--DSLTPHFAGRQPD-VAEENVQARIRGLLMMAYSNKWGS 396

Query: 139 DVLATG 144
            +L TG
Sbjct: 397 LLLTTG 402


>gi|262172162|ref|ZP_06039840.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus MB-451]
 gi|261893238|gb|EEY39224.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus MB-451]
          Length = 517

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++    D EERF    + +  P A     G   +               
Sbjct: 271 -------DKFGLNIIKVDAEERFLKALDGIDEPEAKRKTIGRVFVEV-----------FD 312

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             +++L  A  LA G      +        +  + +           +          L 
Sbjct: 313 EESKKLSNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMKMGLV 365

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 366 EPLRELFKDEVRKIGLELGLP 386


>gi|257082299|ref|ZP_05576660.1| hypothetical protein EFJG_00743 [Enterococcus faecalis E1Sol]
 gi|307287988|ref|ZP_07568021.1| hypothetical protein TIGR00268 [Enterococcus faecalis TX0109]
 gi|256990329|gb|EEU77631.1| hypothetical protein EFJG_00743 [Enterococcus faecalis E1Sol]
 gi|306501133|gb|EFM70440.1| hypothetical protein TIGR00268 [Enterococcus faecalis TX0109]
 gi|315027986|gb|EFT39918.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX2137]
 gi|315163772|gb|EFU07789.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX1302]
          Length = 278

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQAKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|256751315|ref|ZP_05492195.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749870|gb|EEU62894.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 380

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V A ++ + G +V  V          S    S  A   V D  +V
Sbjct: 172 NGKATVLLSGGIDSPVAAWMMMKRGVEVEAVYFH-------SPPYTSERAKDKVVDLCKV 224

Query: 80  CDTIN--VSHYVFDYEER 95
                  +  +V  + + 
Sbjct: 225 LSQYGQRIKLHVVHFTDL 242


>gi|255972478|ref|ZP_05423064.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256762813|ref|ZP_05503393.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|255963496|gb|EET95972.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256684064|gb|EEU23759.1| conserved hypothetical protein [Enterococcus faecalis T3]
          Length = 275

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 14  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 59

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 60  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 109

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 110 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQAKL-------- 150

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 151 --YKIEIRQLAKDAGISNWSKVAS 172


>gi|304317216|ref|YP_003852361.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778718|gb|ADL69277.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 383

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 43/194 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R VV +SGG+DS V A ++ + G ++  V          S       A   V D   +
Sbjct: 171 NGRAVVLLSGGIDSPVAAWMMMKRGVEIEAVYFH-------SPPYTQERAKDKVID---L 220

Query: 80  CDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           C  +     ++  +V ++ + F+ A+             P       R +      ++  
Sbjct: 221 CKKLSEYGQDIYLHVVNFTD-FQLAIYDKC--------PPKMTTIIMRRMMMRVAENIAN 271

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GA  L TG  +        +                  Y     T   +     PL  
Sbjct: 272 KYGAKALITGESLGQVASQTIESL----------------YCTNEVTHMPVFR---PLIG 312

Query: 195 MKKESVRDLAREMG 208
           M K  + ++++++G
Sbjct: 313 MDKSEIVEISKKIG 326


>gi|315147528|gb|EFT91544.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX4244]
 gi|327535393|gb|AEA94227.1| PP-loop family protein [Enterococcus faecalis OG1RF]
          Length = 278

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQAKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|254383092|ref|ZP_04998446.1| GMP synthase [Streptomyces sp. Mg1]
 gi|194341991|gb|EDX22957.1| GMP synthase [Streptomyces sp. Mg1]
          Length = 545

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 28/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 226 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 276

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T  V   V D +ERF NA   V  P       G   +   +  +       L + ++
Sbjct: 277 VAAT-GVQLKVVDAQERFLNALAGVSDPETKRKIIGREFIRVFEQAQ-------LEILQE 328

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G   +A          V + G             +   + +         +L  PL  +
Sbjct: 329 DGP-AVAFLVQGTLYPDVVESGGG-----TGTANIKSH-HNVGGLPDDIEFELVEPLRQL 381

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + +E+GL 
Sbjct: 382 FKDEVRMVGQELGLP 396


>gi|163785862|ref|ZP_02180328.1| hypothetical protein HG1285_18986 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878868|gb|EDP72906.1| hypothetical protein HG1285_18986 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 229

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 37/141 (26%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +PKD R+++A+SGG DS    AL   L + GY+  G  + L     +   K         
Sbjct: 57  SPKD-RILIAVSGGKDS---LALWNALVKLGYEADGFYIDLGIDEYSQDSK--------- 103

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-------TVKF 126
             A +  + I    ++   +E      I P          P      NR       TVK 
Sbjct: 104 RLALQFAEKIERPLHIVSLKEE-----IAPI---------PQIDQITNRPACSACGTVKR 149

Query: 127 SDLLSVTRQLGADVLATGHYI 147
             +    ++LG +++ATGH +
Sbjct: 150 YYMNKYAKELGYNIIATGHNL 170


>gi|220929786|ref|YP_002506695.1| hypothetical protein Ccel_2382 [Clostridium cellulolyticum H10]
 gi|220000114|gb|ACL76715.1| hypothetical protein Ccel_2382 [Clostridium cellulolyticum H10]
          Length = 368

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---LYNSRKASKRKGSCCAGQDVYDARRV 79
           V+V +SGGVDSSV    +           L+    +N         +        + R++
Sbjct: 65  VLVPLSGGVDSSVALINIVEK------FKLRPLVFHNDHGYEDETAT-------DNVRKL 111

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  +NV   ++  +  F   +   F      G     C  C   +  + L  +       
Sbjct: 112 CRELNVDMILWQNDFTFMKKLWKYFNECNIQGL--NACYVCGNILYLNAL-ELASNFDIP 168

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCR 165
           ++  G+       +GD  K  + + +
Sbjct: 169 LIINGYSKGQAALIGDQEKGSKQLEK 194


>gi|47210539|emb|CAF90658.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 720

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 68/234 (29%), Gaps = 54/234 (23%)

Query: 13  DLDKNPKDMRVVV-----AMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASK 62
           ++ +     +V+V      +SGGVDS+V  ALL     +     VI V +          
Sbjct: 226 EIREKVGKSKVLVSGAEVLLSGGVDSTVCTALLNKALNQEQ---VIAVHIDNGF------ 276

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-------- 114
                   ++          + +   V +    F N              TP        
Sbjct: 277 -----MRKRESQSVEEALTKLGIKLKVVNAAHTFYNG--TTTLPISEEDRTPRKRISKTL 329

Query: 115 ----LPC----VDCNRTVKFSDLLSVTRQLGADVL------ATGHYIRSRLYVGDDGKRR 160
                P     +  +  VK         + G          A G    S     D  +  
Sbjct: 330 NMTTNPEEKRKIIGDTFVKVGAGRRRRTRRGQRGDRRDEPEAGGGVPGSGHLRPDLIESA 389

Query: 161 RIMCRPM-DLER---DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             +     D+ +   + +  +     +    +  PL D  K+ VR L RE+GL 
Sbjct: 390 SHLASGKADVIKTHHNDTELIRKLRDE--GKVIEPLKDFHKDEVRALGRELGLP 441


>gi|146318527|ref|YP_001198239.1| GMP synthase [Streptococcus suis 05ZYH33]
 gi|146320723|ref|YP_001200434.1| GMP synthase [Streptococcus suis 98HAH33]
 gi|223932136|ref|ZP_03624140.1| GMP synthase, large subunit [Streptococcus suis 89/1591]
 gi|253751654|ref|YP_003024795.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis SC84]
 gi|253753556|ref|YP_003026697.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis P1/7]
 gi|253755631|ref|YP_003028771.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis BM407]
 gi|302023758|ref|ZP_07248969.1| GMP synthase [Streptococcus suis 05HAS68]
 gi|145689333|gb|ABP89839.1| GMP synthase, PP-ATPase domain/subunit [Streptococcus suis 05ZYH33]
 gi|145691529|gb|ABP92034.1| GMP synthase, PP-ATPase domain/subunit [Streptococcus suis 98HAH33]
 gi|223899117|gb|EEF65474.1| GMP synthase, large subunit [Streptococcus suis 89/1591]
 gi|251815943|emb|CAZ51557.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis SC84]
 gi|251818095|emb|CAZ55889.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis BM407]
 gi|251819802|emb|CAR45737.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis P1/7]
 gi|292558297|gb|ADE31298.1| GMP synthase [Streptococcus suis GZ1]
 gi|319758080|gb|ADV70022.1| GMP synthase [Streptococcus suis JS14]
          Length = 516

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSVV  LL+R     IG  +T    +     K +G            
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLLRKNEGDQVME------- 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +     ++    D  +RF + +                 V       F D    ++   
Sbjct: 270 MLGGKFGLNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYV-----FDD--EASKLTD 322

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + LA G      +  G D           +  +   + +    +     L  PL  + K
Sbjct: 323 VEFLAQGTLYTDIIESGTDT---------AETIKSH-HNVGGLPEDMQFKLIEPLNTLFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR L   +G+ 
Sbjct: 373 DEVRALGTALGMP 385


>gi|293605939|ref|ZP_06688309.1| GMP synthase [Achromobacter piechaudii ATCC 43553]
 gi|292815726|gb|EFF74837.1| GMP synthase [Achromobacter piechaudii ATCC 43553]
          Length = 530

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ +  G  +  V     +       +G           +   +
Sbjct: 228 VILGLSGGVDSSVAAALIHKAIGDQLTCVF---VDHGLLRLDEGKQVM-------QTFAE 277

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137
            + V     D   +F      V  P A     G   +                   +Q  
Sbjct: 278 NMGVKIIHVDATAQFMGKLSGVADPEAKRKIIGREFVEV-----------FQEQAGKQQS 326

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  LA G      +        +    +           +          L  PL ++ K
Sbjct: 327 AKWLAQGTIYPDVIESAGAKTGKATSIKSHHN-------VGGLPDTLNLQLLEPLRELFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 380 DEVRELGVALGLP 392


>gi|153811188|ref|ZP_01963856.1| hypothetical protein RUMOBE_01580 [Ruminococcus obeum ATCC 29174]
 gi|149832686|gb|EDM87770.1| hypothetical protein RUMOBE_01580 [Ruminococcus obeum ATCC 29174]
          Length = 481

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 42/208 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV A LL R  G  +  V     +     K +G    G 
Sbjct: 165 EIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEGV 221

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + ++R+ +           AG T  P  +  R +       
Sbjct: 222 FGPNGQ-----FDLNFIRVNAQQRYYDK---------LAGVT-EP--EAKRKIIGEEFIR 264

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQ 182
                 +++GA D LA G      +  G  G+    +       +    D          
Sbjct: 265 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD---------- 314

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++  PL D+ K+ VR    E+G+ 
Sbjct: 315 --FKEIIEPLRDLFKDEVRKAGLELGIP 340


>gi|15679197|ref|NP_276314.1| hypothetical protein MTH1186 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622294|gb|AAB85675.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 278

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 35/192 (18%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            + VA+SGG DS +    L        +++  +T                   + V  AR
Sbjct: 29  HIAVALSGGKDSVLTLHALSDLRSDLDFELTAIT---------VDEGIGGYRSEGVMVAR 79

Query: 78  RVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              + + V      + + F    ++V   F+S         PC+ C    ++  L    R
Sbjct: 80  ENAELLGVELIERSFRDEFNFELDSVTDRFSS---------PCIPCGVFRRW-ILNRTAR 129

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL--RFPL 192
           ++GA  +ATGH         DD  +  IM       R  S F     +     +    PL
Sbjct: 130 EIGASKIATGH-------NMDDEIQSFIMSLARGDVRKFSKFGPELQRIHPAMVPRIKPL 182

Query: 193 GDMKKESVRDLA 204
               +  VR  A
Sbjct: 183 WSTPESEVRLWA 194


>gi|85813930|emb|CAF31559.1| putative fortimicin production protein; unknown ATP/GTP-binding
           protein [Micromonospora olivasterospora]
          Length = 233

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 25/206 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             +  + VV +SGG+DS+ V A+   +GY+   ++ +                  ++  A
Sbjct: 2   PTEKRKAVVLLSGGLDSATVLAMAVHEGYEAHALSFRY-----------GQRHTVELKAA 50

Query: 77  RRVCDTINVSHYVF---DYE-------ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            RV   +  + +V    D              AV    ++    G+ P+  V    T+  
Sbjct: 51  ARVAKALGATRHVVADIDLRVFGGSALTDDSLAVPHHASADELGGDIPVTYVPARNTIFL 110

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           S  L+    L A  +  G          D           M               +Q  
Sbjct: 111 SFALAWAETLDASDIFIGVSALDYSGYPDCRPEYIAAYEAM----ANLATKAGVEGRQRL 166

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
            +  PL  + K        E+G+D A
Sbjct: 167 RIHTPLIQLTKAETIRRGLELGVDYA 192


>gi|282855790|ref|ZP_06265096.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282586422|gb|EFB91684.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 269

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 55/200 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDAR 77
           V VA SGGVDS+    LLK      G  V+ +T Q  +  R+        C  + +    
Sbjct: 21  VAVAFSGGVDST---FLLKAAREALGDRVLAITAQSCFFPRRELDEADEFCERERIRHEI 77

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            VCD ++V     +                         C  C R + F  ++++    G
Sbjct: 78  CVCDELSVPGIRENPR---------------------NRCYLCKRAL-FEKMIALAASRG 115

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
              +A G        + D G  R  +    +L                  ++ PL D  +
Sbjct: 116 FRRVAEG------SNMDDMGDYRPGLQAVAELG-----------------VKSPLRDAGL 152

Query: 196 KKESVRDLAREMGLDIADKS 215
           +K+ +R L++E+GL   +K 
Sbjct: 153 RKDEIRALSKELGLPTWNKP 172


>gi|167040647|ref|YP_001663632.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter sp. X514]
 gi|300914688|ref|ZP_07132004.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter sp. X561]
 gi|307724078|ref|YP_003903829.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter sp. X513]
 gi|238687596|sp|B0K3I5|THII_THEPX RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|166854887|gb|ABY93296.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter sp. X514]
 gi|300889623|gb|EFK84769.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter sp. X561]
 gi|307581139|gb|ADN54538.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter sp. X513]
          Length = 380

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V A ++ + G +V  V          S    S  A   V D  +V
Sbjct: 172 NGKATVLLSGGIDSPVAAWMMMKRGVEVEAVYFH-------SPPYTSERAKDKVVDLCKV 224

Query: 80  CDTIN--VSHYVFDYEER 95
                  +  +V  + + 
Sbjct: 225 LSQYGQRIKLHVVHFTDL 242


>gi|330832790|ref|YP_004401615.1| GMP synthase [Streptococcus suis ST3]
 gi|329307013|gb|AEB81429.1| GMP synthase [Streptococcus suis ST3]
          Length = 516

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSVV  LL+R     IG  +T    +     K +G            
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLLRKNEGDQVME------- 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +     ++    D  +RF + +                 V       F D    ++   
Sbjct: 270 MLGGKFGLNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYV-----FDD--EASKLTD 322

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + LA G      +  G D           +  +   + +    +     L  PL  + K
Sbjct: 323 VEFLAQGTLYTDIIESGTDT---------AETIKSH-HNVGGLPEDMQFKLIEPLNTLFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR L   +G+ 
Sbjct: 373 DEVRALGTALGMP 385


>gi|167627632|ref|YP_001678132.1| NAD(+) synthase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241668200|ref|ZP_04755778.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876735|ref|ZP_05249445.1| NH(3)-dependent NAD(+) synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597633|gb|ABZ87631.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254842756|gb|EET21170.1| NH(3)-dependent NAD(+) synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 249

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 39/182 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ D   +   +
Sbjct: 33  VIGISGGIDSAVAASLAVKTGLPTTALIL-----------PSKNNQDQDMKDGLELIKNL 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           ++ H++   +  + +  I    +   +       +  N    ++   L +  +Q      
Sbjct: 82  DIEHHIVPIQPAY-DTFIESTLNFTNSQNDRQHVIKGNAQARLRMMYLYAYAQQ------ 134

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 135 ------NNRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DL 203
           ++
Sbjct: 176 EM 177


>gi|150399298|ref|YP_001323065.1| thiamine biosynthesis protein [Methanococcus vannielii SB]
 gi|150012001|gb|ABR54453.1| thiamine biosynthesis protein [Methanococcus vannielii SB]
          Length = 299

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 23/130 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVI-GV-TLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + ++VV +SGG DS+V  A+ K  G +V   V  L  ++   ++              A+
Sbjct: 38  NEKIVVMLSGGKDSAVSLAIAKSLGLNVHLCVHFLHDWSWNISTDE------------AK 85

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++ D  NV     D  E                 +    C  C   +K + ++ + ++  
Sbjct: 86  KLADRFNVKIIFPDITEE--------LLKKTQGAKGKSICRICKTIMK-ARMVEIAKEEN 136

Query: 138 ADVLATGHYI 147
           A ++ TG   
Sbjct: 137 AKIIMTGETA 146


>gi|109947532|ref|YP_664760.1| NAD synthetase [Helicobacter acinonychis str. Sheeba]
 gi|122973294|sp|Q17X65|NADE_HELAH RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|109714753|emb|CAJ99761.1| NH(3)-dependent NAD+ synthetase [Helicobacter acinonychis str.
           Sheeba]
          Length = 260

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 52/221 (23%)

Query: 21  MRVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +VV  +SGG+DS+VV  L     K + +    + +                  +   DA
Sbjct: 26  KKVVYGLSGGLDSAVVGVLSQKVFKENAH---ALLM-----------PSLVSMPESKSDA 71

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +C+T ++ +  +     +       F  + +       C      ++ + L   + + 
Sbjct: 72  LDLCETFSIPYTEYSIAP-YDAIFCSYFKDA-SLTRKGNFC----SRLRMAFLYDYSLK- 124

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                       + L +G   K  R++              + T    L     P+G++ 
Sbjct: 125 -----------SNSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELF 160

Query: 197 KESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
           K  V +LA+ + +   I DK  S D+ FV Q    D+    
Sbjct: 161 KTEVYELAQHLNIPKKILDKPPSADL-FVGQSDEKDLGYPY 200


>gi|84490240|ref|YP_448472.1| argininosuccinate synthase [Methanosphaera stadtmanae DSM 3091]
 gi|119361292|sp|Q2NEC4|ASSY_METST RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|84373559|gb|ABC57829.1| ArgG [Methanosphaera stadtmanae DSM 3091]
          Length = 392

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 37/198 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV   LL+             YN    +          ++        
Sbjct: 3   KVVLAFSGGLDTSVCVKLLQEK-----------YNMEVITACVDVGQPEDEIKKPEAAAQ 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            I    HY  D ++ F          + +  E   P      R +    ++ + ++  A 
Sbjct: 52  KIGSDKHYTIDAKDEFAKEYAFRCIKTNSLYE-GYPLSTAYARPLIAKKIVEIAKKENAS 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KK 197
            +A G                   C       DQ  F      +   D+  P+ D    +
Sbjct: 111 TIAHG-------------------CTGK--GNDQFRFEATIRSESDLDIVAPVRDYNLTR 149

Query: 198 ESVRDLAREMGLDIADKS 215
              +D ARE G+ +  + 
Sbjct: 150 TEEQDYAREHGIPLPSEK 167


>gi|332073782|gb|EGI84260.1| GMP synthase [Streptococcus pneumoniae GA41301]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|329116978|ref|ZP_08245695.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326907383|gb|EGE54297.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +   ++ K   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMQIDNIRKQVGDKKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G    G        +     ++    D + RF + +                 V  
Sbjct: 264 RKDEGDQVMG-------MLGGKFGLNIIRVDAKNRFLDLLAGVDDPEKKRKIIGNEFVYV 316

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++  G D LA G        + + G       +           +   
Sbjct: 317 -----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------VGGL 359

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 360 PEDMQFELIEPLNTLFKDEVRALGIALGMP 389


>gi|322801315|gb|EFZ22002.1| hypothetical protein SINV_15099 [Solenopsis invicta]
          Length = 585

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 51/166 (30%), Gaps = 42/166 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D R+   +SGG+DSS+VAALL +   +           +  S   G      D+  AR+V
Sbjct: 275 DRRIGCLLSGGLDSSLVAALLMKQSKE------HNLPYKIQSFAIGM-GDSPDIVAARQV 327

Query: 80  CDTINVSHYVFDYEERFRNAVIV--------------------PFASSYAAGETPLPCVD 119
              I   H+   + ++    V+                        S Y    T    + 
Sbjct: 328 AKYIGTEHHEIIFTQQDVINVLDKVIYTLETFDITTIRASIGMYLISRYIKQNTETTVIF 387

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH-YIRSRLYVGDDGKRRRIMC 164
                            GAD LA G+ Y R      D       + 
Sbjct: 388 SGE--------------GADELAQGYIYFREAPNATDAHNESLRLL 419


>gi|322376887|ref|ZP_08051380.1| GMP synthase [Streptococcus sp. M334]
 gi|321282694|gb|EFX59701.1| GMP synthase [Streptococcus sp. M334]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|301318276|gb|ADK67053.1| GMP synthase [Stenotrophomonas terrae]
          Length = 184

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++     ++G           + + D
Sbjct: 38  VILGLSGGVDSSVVAALLHKAIGEQLTCVF---VDTGLLRFQEGDQVM-------QMMAD 87

Query: 82  TINVSHYVFDYEERFRNA 99
            + V     +  +R+  A
Sbjct: 88  NMGVKVVRVNAADRYFKA 105


>gi|218132480|ref|ZP_03461284.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992590|gb|EEC58592.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC
           43243]
          Length = 247

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV---TLQLYNSRKASKRKGSCCA 69
           D        ++ V +SGG DS     LL    Y + G+       +     +   G    
Sbjct: 16  DYSMINSGDKIAVGISGGKDSLT---LL----YALHGLRRFYPNNFEIEAVTVNAG--IE 66

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           G D     R+CD ++V++ V D  + + + V       Y       PC  C +  K    
Sbjct: 67  GMDFSPISRLCDELDVNYTVID-TDIY-DIV-------YNIRRESNPCALCAKLRK-GAF 116

Query: 130 LSVTRQLGADVLATGHY 146
                +LG + +A  H+
Sbjct: 117 NKKAAELGCNKIAYAHH 133


>gi|168333408|ref|ZP_02691688.1| GMP synthase, large subunit [Epulopiscium sp. 'N.t. morphotype B']
          Length = 513

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + ++A+SGGVDSSV A +L +  G    G+T    +     K +G               
Sbjct: 217 KALLALSGGVDSSVAAMILSKAIG---KGLTCVFVDHGLLRKNEGDEVEAIFADK----- 268

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           + ++++    D  +RF             AG T     +  R +             +++
Sbjct: 269 NKLDLNFIRVDASKRFYAK---------LAGVT---DPEAKRKIIGEEFIRVFEEEAKKI 316

Query: 137 GA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGD 194
           GA D    G        + + G  +  + +           +          ++  PL  
Sbjct: 317 GAVDFFVQG---TIYPDIIESGLNKSAVIKSHHN-------VGGLPDYVDFKEIIEPLRL 366

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GLD
Sbjct: 367 LFKDEVRKVGIELGLD 382


>gi|94310405|ref|YP_583615.1| GMP synthase [Cupriavidus metallidurans CH34]
 gi|123383866|sp|Q1LND0|GUAA_RALME RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|93354257|gb|ABF08346.1| GMP synthetase (glutamine aminotransferase) [Cupriavidus
           metallidurans CH34]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V                   G+ V D      
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF--------VDHGLLRLDEGKMVMD--MFAG 274

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D  E+F                T +   +  R +   + + V     ++L 
Sbjct: 275 RLHAKVVHIDASEQFLGH------------LTGVTDPEQKRKIIGREFVEVFQAEAKKLS 322

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G      +  G    ++    +           +    +     L  PL D+ 
Sbjct: 323 NAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRDLF 375

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 376 KDEVRELGVALGLP 389


>gi|329945850|ref|ZP_08293537.1| GMP synthase domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328528298|gb|EGF55276.1| GMP synthase domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 528

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 53/209 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDSSV AAL+ R  G  +  +            R G     +  Y    
Sbjct: 223 DAHVICGLSGGVDSSVAAALVHRAVGDQLTCIF-----VDHGLLRAGEREQVEHDY---- 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQ 135
             + + +     D  ERF +A          AG T  P  +  R +   +        ++
Sbjct: 274 -AEGMGIRVITVDETERFLSA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQR 320

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPM--------------DLERDQSYFLFATT 181
                       R    VG +G   R + +                   +   + +    
Sbjct: 321 ------------RVVEAVGAEGGEIRFLVQGTLYPDVVESGGGEGAANIKSH-HNVGGLP 367

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     L  PL ++ K+ VR + RE+G+ 
Sbjct: 368 EDLDFQLIEPLRELFKDEVRTIGRELGVP 396


>gi|320352192|ref|YP_004193531.1| GMP synthase [Desulfobulbus propionicus DSM 2032]
 gi|320120694|gb|ADW16240.1| GMP synthase (glutamine-hydrolyzing) [Desulfobulbus propionicus DSM
           2032]
          Length = 516

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 68/197 (34%), Gaps = 41/197 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           RV+ A+SGGVDSSVVAAL+ R  G  +  +      ++   S  +  R         V D
Sbjct: 222 RVICALSGGVDSSVVAALVHRAIGDQLTCIHVNNGLMRTGESE-SVLRFFREKTSLTVID 280

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVP-FASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                  +N    V D     +   I   F   + A                       +
Sbjct: 281 VDATEFFLNALDGVAD--PEEKRKRIGYGFIEIFEAE---------------------AK 317

Query: 135 QLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +LG    LA G      +          ++ R     +          + QL  L  PL 
Sbjct: 318 KLGKVRYLAQGTLYPDVIES--------VVFRGKAPIKSHHNVGGLPERMQLD-LIEPLR 368

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR+L  E+GL 
Sbjct: 369 ELFKDEVRELGLELGLP 385


>gi|199594522|gb|ACH90725.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594524|gb|ACH90726.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +  +R+ NA
Sbjct: 86  -AEHMGVKVVRVNAADRYFNA 105


>gi|156502091|ref|YP_001428156.1| NAD+ synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954539|ref|ZP_06559160.1| NAD+ synthetase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312055|ref|ZP_06802870.1| NAD+ synthetase [Francisella tularensis subsp. holarctica URFT1]
 gi|156252694|gb|ABU61200.1| NAD+ synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 249

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 33  VIGLSGGIDSAVAASLAVKTGLPTTALIL-----------PSDNNQHQDMQDALELIEML 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +    S           +  N    ++   L +  +Q      
Sbjct: 82  NIEHYTISIQPAY-EAFLASTQSFTNLQNNRQLVIKGNAQTRLRMMYLYAYAQQY----- 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 136 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 176 ELGKYLDVP 184


>gi|149372156|ref|ZP_01891426.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [unidentified eubacterium SCB49]
 gi|149354923|gb|EDM43485.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [unidentified eubacterium SCB49]
          Length = 509

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L K   D +VV+ +SGGVDS+V A LL +  G ++  + +     RK            
Sbjct: 206 ELQKKIGDDKVVLGLSGGVDSTVAAILLHKAIGKNLYCIFVNNGLLRKNEFTD----VLH 261

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              D       + ++    D  +RF +A          AG T     +  R    +  + 
Sbjct: 262 QYKD-------MGLNVKGVDASKRFLDA---------LAGLT---DPEAKRKAIGNAFIE 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V     A  +    Y+       D  +   +    + ++   +  +          +  P
Sbjct: 303 VFDD-EATSIEDVVYLAQGTIYPDVIESVSVNGPSVTIKSHHN--VGGLPDFMKLKIVEP 359

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR +  EMG+D
Sbjct: 360 LRMLFKDEVRRVGAEMGID 378


>gi|297180756|gb|ADI16963.1| predicted ATPase of the PP-loop superfamily implicated in cell
          cycle control [uncultured Sphingobacteriales bacterium
          HF0010_19H17]
          Length = 441

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 19 KDMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          KD +++VA+SGG+DS V    L+   G+ V           + S          D    +
Sbjct: 16 KDDKILVALSGGLDS-VALLYLMHMSGFYVEAAHCNFNLRGEESDG--------DAQFVK 66

Query: 78 RVCDTINVSHYVFDY 92
           +C  + +  +V ++
Sbjct: 67 ELCAALGLPVHVKNF 81


>gi|303244455|ref|ZP_07330790.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
 gi|302485153|gb|EFL48082.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
          Length = 330

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           NPKD +++V +SGG DS  +  LL    +R G ++  +T+ L      +  +      ++
Sbjct: 73  NPKD-KIIVGLSGGKDSLALLHLLEPYRRRYGIEIYAITIDL----NINGIRPWSSDNKN 127

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +   ++ C+ +N+ H +      F   V+      S    G    PC  C+   ++  L 
Sbjct: 128 MASIKKHCENLNIPHKII----GFDKDVVEMSKILSENTKGIEYSPCFSCSVVRRY-ILT 182

Query: 131 SVTRQL 136
           +   +L
Sbjct: 183 NFAMKL 188


>gi|167765182|ref|ZP_02437295.1| hypothetical protein BACSTE_03568 [Bacteroides stercoris ATCC
           43183]
 gi|167696810|gb|EDS13389.1| hypothetical protein BACSTE_03568 [Bacteroides stercoris ATCC
           43183]
          Length = 517

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            L +   D +VV+ +SGGVDSSV A LL R  G ++  +     +     K +       
Sbjct: 206 QLKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF---VDHGMLRKDE----FKN 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++D     + + ++    D   +F             AG T  P  +  R +     + 
Sbjct: 259 VLHDY----ECLGLNVIGVDASAKFFAE---------LAGVT-EP--EKKRKIIGKGFID 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  +  A  +    ++       D  +   I    +    +    +    ++    L  P
Sbjct: 303 VFDE-EAHKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LRLLFKDEVRRVGRELGMP 376


>gi|116671415|ref|YP_832348.1| GMP synthase [Arthrobacter sp. FB24]
 gi|116611524|gb|ABK04248.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter sp. FB24]
          Length = 529

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D RV+  +SGGVDS+V AAL++R  G  +  V     +     + +        
Sbjct: 218 IRKQIGDARVICGLSGGVDSAVAAALVQRAVGDQLTCVF---VDHGLLREGEAEQVERDF 274

Query: 73  VYDARRVCDTINVSHYVFDYEERFR 97
                 V  T  V  YV + +ERF+
Sbjct: 275 ------VAAT-GVKLYVANEQERFQ 292


>gi|307709035|ref|ZP_07645495.1| GMP synthase [Streptococcus mitis SK564]
 gi|307620371|gb|EFN99487.1| GMP synthase [Streptococcus mitis SK564]
          Length = 513

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 201 MDNFIDMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 255

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 256 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 309

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 310 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 353

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 354 EDMQFELIEPLNTLYKDEVRALGTELGMP 382


>gi|291519766|emb|CBK74987.1| preQ(0) biosynthesis protein QueC [Butyrivibrio fibrisolvens 16/4]
          Length = 228

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 43/225 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M+ +V +SGGVDS+    +  K  G + V+G+++                  +++  A  
Sbjct: 1   MKALVLVSGGVDSTTCLGMAVKEYGSENVVGLSIFYGQRHD-----------KEIKAADA 49

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD----------CNRTVKF-- 126
           VC+  NV H   D    F           ++ GE P                +  V F  
Sbjct: 50  VCEHYNVEHITLDLSTMF--QFSDCTLLQHSDGEIPEESYAEQLAKTDGKPVSTYVPFRN 107

Query: 127 SDLL----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
              L    ++    G   +  G +        DD                 +  ++  + 
Sbjct: 108 GLFLSSASAIALSKGCSKIYYGAHS-------DDAAGNAYPDCSEAFNNAMNTAIYEGSG 160

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           +QL  +  P  ++ K  V     + GL+I    +    C+    K
Sbjct: 161 KQLQ-IEAPFINLTKAQVV----KKGLEIGVPYELTWSCYEGHEK 200


>gi|194016061|ref|ZP_03054676.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Bacillus pumilus ATCC 7061]
 gi|194012416|gb|EDW21983.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Bacillus pumilus ATCC 7061]
          Length = 513

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            + +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 ESDKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGSELGIP 382


>gi|154493620|ref|ZP_02032940.1| hypothetical protein PARMER_02960 [Parabacteroides merdae ATCC
           43184]
 gi|154086830|gb|EDN85875.1| hypothetical protein PARMER_02960 [Parabacteroides merdae ATCC
           43184]
          Length = 506

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 205 ELKEQLGDDKVILALSGGVDSSVTAVLLHKAIGKNLTCIF---VDHGLLRKNE----FEN 257

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
            + D     + + ++    D +E+F   
Sbjct: 258 VLKDY----EHLGLNVIGVDAKEKFYKE 281


>gi|50365338|ref|YP_053763.1| NH3-dependent NAD+ synthetase [Mesoplasma florum L1]
 gi|81695657|sp|Q6F0U4|NADE_MESFL RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|50363894|gb|AAT75879.1| NH3-dependent NAD+ synthetase [Mesoplasma florum L1]
          Length = 244

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 52/196 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS+VVA L K+    D   V +        S  +   C  + +       D
Sbjct: 26  VVIGISGGIDSAVVACLAKKAFPNDYTAVWM-----PIESSDEDYKCKQELI-------D 73

Query: 82  TINVSHYVFDYEER---FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
              +     + +E    F+ A+       +          +    ++ + L +V +    
Sbjct: 74  QCGIKAIDVELKETFLSFKKAIKDSTTPEHKLAI-----ANAKARLRMTTLYTVAQ---- 124

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                     S L +G D      +    +  D   D                  PL  +
Sbjct: 125 --------TNSYLVLGTDNLDEWHIGYFTKFGDGGVD----------------MVPLVHL 160

Query: 196 KKESVRDLAREMGLDI 211
            K  VR+ AR +G+  
Sbjct: 161 LKREVREAARILGVPT 176


>gi|328910625|gb|AEB62221.1| GMP synthetase [Bacillus amyloliquefaciens LL3]
          Length = 516

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 221 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 266

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 267 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 315

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 316 EAVKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 365

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 366 PLNTLFKDEVRALGTELGIP 385


>gi|328541853|ref|YP_004301962.1| Argininosuccinate synthase 2 [Polymorphum gilvum SL003B-26A1]
 gi|326411603|gb|ADZ68666.1| Argininosuccinate synthase 2 [Polymorphum gilvum SL003B-26A1]
          Length = 406

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  ARR 
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQTELGAEVVTFT-------------ADLGQGEELEPARRK 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
            + + +   ++ D  E F    + P   + A  E          R +    L+ +  + G
Sbjct: 54  AEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIAAKTG 113

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 114 ADAIAHG 120


>gi|306825339|ref|ZP_07458680.1| GMP synthase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432471|gb|EFM35446.1| GMP synthase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|255088800|ref|XP_002506322.1| predicted protein [Micromonas sp. RCC299]
 gi|226521594|gb|ACO67580.1| predicted protein [Micromonas sp. RCC299]
          Length = 459

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 66/201 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +VI  T                  G+++  AR  
Sbjct: 59  KKVVLAYSGGLDTSIILKWLQDTYGCEVITFT-------------ADLGQGEELEPARAK 105

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + + V   Y+ D  E F    + P          +Y  G +    +   R +       
Sbjct: 106 AEQMGVKQIYIDDLREEFVRDYVFPMFRANAIYEGTYLLGTSIARPLISKRQI------E 159

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + +++GAD +  G                           DQ              +RF 
Sbjct: 160 IAKEVGADAVCHG---------------------ATGKGNDQ--------------VRFE 184

Query: 192 LGDM-KKESVRDLA--REMGL 209
           LG    K  ++ +A  RE  L
Sbjct: 185 LGYYGLKPDIKVIAPWREWDL 205


>gi|221232174|ref|YP_002511327.1| GMP synthase [Streptococcus pneumoniae ATCC 700669]
 gi|225854888|ref|YP_002736400.1| GMP synthase [Streptococcus pneumoniae JJA]
 gi|254800118|sp|B8ZKZ5|GUAA_STRPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800120|sp|C1CF29|GUAA_STRZJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|220674635|emb|CAR69203.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae ATCC
           700669]
 gi|225723988|gb|ACO19841.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae JJA]
          Length = 520

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|218262620|ref|ZP_03477008.1| hypothetical protein PRABACTJOHN_02687 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223269|gb|EEC95919.1| hypothetical protein PRABACTJOHN_02687 [Parabacteroides johnsonii
           DSM 18315]
          Length = 506

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 205 ELKEQLGDDKVILALSGGVDSSVTAVLLHKAIGKNLTCIF---VDHGLLRKNE----FEN 257

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
            + D     + + ++    D +E+F   
Sbjct: 258 VLKDY----EHLGLNVIGVDAKEKFYKE 281


>gi|45358917|ref|NP_988474.1| thiamine biosynthesis protein [Methanococcus maripaludis S2]
 gi|45047783|emb|CAF30910.1| Thiamine biosynthesis protein:THUMP domain [Methanococcus
           maripaludis S2]
          Length = 383

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 46/209 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +S G+DS V A ++ + G  ++ + ++  +      +K          +A+ V
Sbjct: 181 QGKVIVLLSDGIDSPVSAYMMAKRGCKLLLLHMKTSDEGLEKTQKLVDVLSDFDPEAKFV 240

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-----PLPCVDCNRTVKFSDLLSVTR 134
                      D+ E           +   A  T        C+ C +      +L +  
Sbjct: 241 ---------YVDFNEE---------LAKIKAELTEINRDKYTCLYCKKY-----MLKLAE 277

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +      A  H   + +   + G+            ++            L     PL  
Sbjct: 278 KH-----AKWHKCDAIVNGDNMGQV------ASQTLKNLRVISEGIDYPILR----PLIG 322

Query: 195 MKKESVRDLAREMGLDIADKSDSQDI-CF 222
           + K  + D+AR++G    D S S+++ CF
Sbjct: 323 LDKVEIMDIARKIG--TFDISTSKEVSCF 349


>gi|157813136|gb|ABV81313.1| putative GMP synthetase [Limulus polyphemus]
          Length = 196

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
           + K   D +V++ +SGGVDS+V AAL+ R  G + VI + +     RK    +       
Sbjct: 37  IKKTVGDKKVLMLVSGGVDSTVCAALVHRALGEERVIAIHVNNGFMRKNESLQVEHSL-- 94

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRN 98
                      + +   V D   +F N
Sbjct: 95  ---------RQLGLKLRVVDASHQFYN 112


>gi|317012170|gb|ADU82778.1| NAD synthetase [Helicobacter pylori Lithuania75]
          Length = 260

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    ++  DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSVSMPENKTDALILC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +  ++ +  +       + +        +       C      ++ + L   + +     
Sbjct: 76  EKFSIPYTEYSIAP--YDKIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELAYYLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|302536332|ref|ZP_07288674.1| GMP synthase [Streptomyces sp. C]
 gi|302445227|gb|EFL17043.1| GMP synthase [Streptomyces sp. C]
          Length = 530

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 28/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 228 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 278

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T  V   V D +ERF  A   V  P       G   +   +  +       L + ++
Sbjct: 279 VAAT-GVQLKVVDAQERFLTALAGVSDPETKRKIIGREFIRVFEQAQ-------LEILQE 330

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G   +A          V + G             +   + +         +L  PL  +
Sbjct: 331 DGP-AVAFLVQGTLYPDVVESGGG-----TGTANIKSH-HNVGGLPDDIEFELVEPLRQL 383

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + +E+GL 
Sbjct: 384 FKDEVRMVGQELGLP 398


>gi|253579384|ref|ZP_04856654.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849482|gb|EES77442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 525

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 42/208 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV A LL R  G  +  V     +     K +G    G 
Sbjct: 209 EIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEGV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + ++R+ +           AG T  P  +  R +       
Sbjct: 266 FGPNGQ-----FDLNFIRVNAQQRYYDK---------LAGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQ 182
                 +++GA D LA G      +  G  G+    +       +    D          
Sbjct: 309 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD---------- 358

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++  PL D+ K+ VR    E+G+ 
Sbjct: 359 --FKEIIEPLRDLFKDEVRKAGLELGIP 384


>gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM
          17136]
 gi|189431712|gb|EDV00697.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM
          17136]
          Length = 426

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 19 KDMRVVVAMSGGVDSSVVAA--LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          +  +++VA+SGG DS V     LL   GY+ +      +   + S R        D    
Sbjct: 18 RSDKILVALSGGADS-VALLRVLLLE-GYNCVAAHCNFHLRGEESDR--------DEEFV 67

Query: 77 RRVCDTINVSHYVFDY 92
          + +C  ++V   V  +
Sbjct: 68 QNLCRGLDVPLQVIHF 83


>gi|157691340|ref|YP_001485802.1| GMP synthase [Bacillus pumilus SAFR-032]
 gi|226738387|sp|A8FAH5|GUAA_BACP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157680098|gb|ABV61242.1| GMP synthase (glutamine-hydrolyzing) [Bacillus pumilus SAFR-032]
          Length = 513

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            + +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 ESDKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGSELGIP 382


>gi|91788306|ref|YP_549258.1| GMP synthase [Polaromonas sp. JS666]
 gi|91697531|gb|ABE44360.1| GMP synthase (glutamine-hydrolyzing) [Polaromonas sp. JS666]
          Length = 539

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 46/203 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L                + V   
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMFVGKLHARVVR-- 287

Query: 77  RRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                         D  E+F      V  P A     G   +          F    +  
Sbjct: 288 -------------VDASEQFLGHLAGVSEPEAKRKIIGREFVEV--------FKAEAARL 326

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-D 187
           +       GA  LA G      +  G    ++ +  +           +     +QL   
Sbjct: 327 KAGDGGHKGAKWLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLK 378

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR+L   +GL 
Sbjct: 379 LLEPLRELFKDEVRELGVALGLP 401


>gi|73661485|ref|YP_300266.1| PP family ATPase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494000|dbj|BAE17321.1| ATP-utilizing enzyme of the PP-loop superfamily [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 274

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 41/203 (20%)

Query: 14  LDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L+   KDM  V+VA SGGVDSS+V   LK+   DV+G     ++  KA   K      ++
Sbjct: 12  LETILKDMNSVIVAFSGGVDSSLV---LKKA-IDVLG-----HDHVKAVIVKSELTRNEE 62

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              A  +   +N      + E      ++     S+            ++ + +S L ++
Sbjct: 63  FDQAIALAHQLNAQVIETEIEALKDPHIVENTPDSW----------YYSKRLLYSKLEAL 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             QL  + +A G        + DD    R   +                           
Sbjct: 113 RAQLNFNYVADG-------MIMDDINDFRPGLKARTEFN--------------VRSILQE 151

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
            ++ K  VR +++   L + +K 
Sbjct: 152 AELFKSDVRAMSKSNHLPVWNKP 174


>gi|33595928|ref|NP_883571.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bordetella parapertussis 12822]
 gi|44887944|sp|Q7WAV6|GUAA_BORPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33566007|emb|CAE36561.1| GMP synthase [glutamine-hydrolyzing] [Bordetella parapertussis]
          Length = 530

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDS V AAL+ R  G  +  V     +       +G           +   +
Sbjct: 228 VILGLSGGVDSLVAAALIHRAIGDQLTCVF---VDHGLLRLDEGKQVM-------QTFAE 277

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            + V     D   +F                T +   +  R +   + + V      +L 
Sbjct: 278 NMGVKIVHVDATSQFMGK------------LTGVADPEAKRKIIGREFVEVFQDEAGKLQ 325

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G      +        +    +           +          L  PL ++ 
Sbjct: 326 GAKWLAQGTIYPDVIESAGAKTGKATSIKSHHN-------VGGLPDTLNLQLLEPLRELF 378

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 379 KDEVRELGVALGLP 392


>gi|167037213|ref|YP_001664791.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115632|ref|YP_004185791.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|238687687|sp|B0K8J2|THII_THEP3 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|166856047|gb|ABY94455.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928723|gb|ADV79408.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 380

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V A ++ + G +V  V          S    S  A   V D  +V
Sbjct: 172 NGKATVLLSGGIDSPVAAWMMMKRGVEVEAVYFH-------SPPYTSERAKDKVVDLCKV 224

Query: 80  CDTIN--VSHYVFDYEER 95
                  +  +V  + + 
Sbjct: 225 LSQYGQRIKLHVVHFTDL 242


>gi|34762609|ref|ZP_00143603.1| GMP synthase [glutamine-hydrolyzing] [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887733|gb|EAA24808.1| GMP synthase [glutamine-hydrolyzing] [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 512

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 72/209 (34%), Gaps = 46/209 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            + +   + +V++ +SGGVDSSV AAL+ +  G  +  +                     
Sbjct: 208 QIKERVGNKQVILGLSGGVDSSVAAALINKAIGKQLTCIF-----------VDTGLLRKD 256

Query: 72  DVYDARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +      V     +++    + EERF +           AG T     +  R +   + +
Sbjct: 257 EAKQVMEVYAKNFDMNIKCINAEERFLSK---------LAGVT---DPETKRKIIGKEFV 304

Query: 131 SV----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            V     +++ GA+ LA        I S    G     +         E           
Sbjct: 305 EVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE--------DLK 356

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + L     PL ++ K+ VR + RE+ + 
Sbjct: 357 FELLE----PLRELFKDEVRKVGRELSIP 381


>gi|289596443|ref|YP_003483139.1| PP-loop domain protein [Aciduliprofundum boonei T469]
 gi|289534230|gb|ADD08577.1| PP-loop domain protein [Aciduliprofundum boonei T469]
          Length = 288

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K   + ++ +A+SGG DS V+        YD+ G  + L          G       +
Sbjct: 36  LKKYKPEGKIAIALSGGKDSMVLLHYFAERDYDIFGYFINL----------GIGEHSDKM 85

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               R  C    V   V +  E +       F       +   PC  C   VK   +  V
Sbjct: 86  EKLVRNACKEYGVELIVTNLREEYG------FGIENVRRK---PCSACGT-VKRYLMNKV 135

Query: 133 TRQLGADVLATGH 145
            R+ GA V+ TGH
Sbjct: 136 PRENGASVVTTGH 148


>gi|254166581|ref|ZP_04873435.1| hypothetical protein ABOONEI_1673 [Aciduliprofundum boonei T469]
 gi|197624191|gb|EDY36752.1| hypothetical protein ABOONEI_1673 [Aciduliprofundum boonei T469]
          Length = 272

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K   + ++ +A+SGG DS V+        YD+ G  + L          G       +
Sbjct: 20  LKKYKPEGKIAIALSGGKDSMVLLHYFAERDYDIFGYFINL----------GIGEHSDKM 69

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               R  C    V   V +  E +       F       +   PC  C   VK   +  V
Sbjct: 70  EKLVRNACKEYGVELIVTNLREEYG------FGIENVRRK---PCSACGT-VKRYLMNKV 119

Query: 133 TRQLGADVLATGH 145
            R+ GA V+ TGH
Sbjct: 120 PRENGASVVTTGH 132


>gi|331266499|ref|YP_004326129.1| bifunctional GMP synthase/glutamine amidotransferase protein,
           GMP-synthase [Streptococcus oralis Uo5]
 gi|326683171|emb|CBZ00789.1| bifunctional GMP synthase/glutamine amidotransferase protein,
           GMP-synthase [Streptococcus oralis Uo5]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|311064162|ref|YP_003970887.1| GMP synthase [Bifidobacterium bifidum PRL2010]
 gi|310866481|gb|ADP35850.1| GuaA GMP synthase (glutamine-hydrolyzing) [Bifidobacterium bifidum
           PRL2010]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|296453920|ref|YP_003661063.1| GMP synthase large subunit [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183351|gb|ADH00233.1| GMP synthase, large subunit [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|170104908|ref|XP_001883667.1| argininosuccinate synthase [Laccaria bicolor S238N-H82]
 gi|164641302|gb|EDR05563.1| argininosuccinate synthase [Laccaria bicolor S238N-H82]
          Length = 417

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++A SGG+D+S + A L   GY+V    +                  +D   A +   
Sbjct: 7   RVLLAYSGGLDTSCILAWLIEQGYEVYA-FMA------------DVGQEEDFAAAEKKAL 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
            +     ++ D +  F   +I P   + A  E          R V    ++++  Q G D
Sbjct: 54  AVGAKKFFLADLKREFVTELIYPAVQANAIYENVYLLGTSLARPVIARGMIAIADQEGCD 113

Query: 140 VLATG 144
            ++ G
Sbjct: 114 FVSHG 118


>gi|297619559|ref|YP_003707664.1| PP-loop domain protein [Methanococcus voltae A3]
 gi|297378536|gb|ADI36691.1| PP-loop domain protein [Methanococcus voltae A3]
          Length = 318

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 53/252 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVYDARRV 79
           + V +SGG DS V+A +L            Q+ NS                  +    + 
Sbjct: 59  IAVGISGGKDSLVMAYVLNE-------FFKQIPNSKIIGIMVNEGIEGFRNDGIEKGIKF 111

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           C+   + +++  + E      + ++           T  PC  C   ++   L  V  + 
Sbjct: 112 CEKFGIEYHIATFSEYIGANLDEIVNIAKEKNM---TMNPCSFCG-VIRRKILNRVAIEK 167

Query: 137 GADVLATGH------YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             D LA GH            Y+  D K+  I+ +  + ++    F+             
Sbjct: 168 KCDYLAIGHNLDDISQAVMMNYIEGDIKKLAILGKSSNSDK----FVKRIK--------- 214

Query: 191 PLGDMKKESVRDLAREMGLDIADKS----------DSQDICFVQQGKYFDVV-------K 233
           PL  + +  V+  A  + +D               +  DI  + + K+   +       +
Sbjct: 215 PLSKIPENEVKLFADILKMDYHKAPCPYSCLSYRSEVSDIIDMLEEKHAGTMYSIVAGYE 274

Query: 234 RINAGIALEGDI 245
           R+   + + GDI
Sbjct: 275 RLLEHLEVPGDI 286


>gi|58616792|ref|YP_195991.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ehrlichia ruminantium str. Gardel]
 gi|75356565|sp|Q5FF75|GUAA_EHRRG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58416404|emb|CAI27517.1| GMP synthase [glutamine-hydrolyzing] [Ehrlichia ruminantium str.
           Gardel]
          Length = 528

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   + +V+ A+SGGVDSSV AAL  K  G  +  V +                   +
Sbjct: 213 IKKQIGNKKVIAALSGGVDSSVAAALTYKAIGDQLHCVFIDN-----------GLLRYNE 261

Query: 73  VYDARRVC-DTINVSHYVFDYEERFRNA 99
           V   +++  + + +   + D    F N 
Sbjct: 262 VEKVKQLFINELKIPVTIVDKSAVFLNR 289


>gi|57238805|ref|YP_179941.1| GMP synthase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578732|ref|YP_196944.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ehrlichia ruminantium str. Welgevonden]
 gi|81353082|sp|Q5HCA2|GUAA_EHRRW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57160884|emb|CAH57786.1| GMP synthase [glutamine-hydrolyzing] [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417358|emb|CAI26562.1| GMP synthase [glutamine-hydrolyzing] [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 528

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   + +V+ A+SGGVDSSV AAL  K  G  +  V +                   +
Sbjct: 213 IKKQIGNKKVIAALSGGVDSSVAAALTYKAIGDQLHCVFIDN-----------GLLRYNE 261

Query: 73  VYDARRVC-DTINVSHYVFDYEERFRNA 99
           V   +++  + + +   + D    F N 
Sbjct: 262 VEKVKQLFINELKIPVTIVDKSAVFLNR 289


>gi|27806925|ref|NP_776317.1| argininosuccinate synthase [Bos taurus]
 gi|114285|sp|P14568|ASSY_BOVIN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|162697|gb|AAA30388.1| argininosuccinate synthetase [Bos taurus]
 gi|74268328|gb|AAI02475.1| Argininosuccinate synthetase 1 [Bos taurus]
 gi|296482159|gb|DAA24274.1| argininosuccinate synthase [Bos taurus]
          Length = 412

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDISKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|15901295|ref|NP_345899.1| GMP synthase [Streptococcus pneumoniae TIGR4]
 gi|15903343|ref|NP_358893.1| GMP synthase [Streptococcus pneumoniae R6]
 gi|111657364|ref|ZP_01408121.1| hypothetical protein SpneT_02001417 [Streptococcus pneumoniae
           TIGR4]
 gi|116516474|ref|YP_816740.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae D39]
 gi|148984786|ref|ZP_01818039.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP3-BS71]
 gi|148990253|ref|ZP_01821464.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP6-BS73]
 gi|148997498|ref|ZP_01825103.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP11-BS70]
 gi|149002837|ref|ZP_01827763.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007285|ref|ZP_01830943.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP18-BS74]
 gi|149019388|ref|ZP_01834750.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP23-BS72]
 gi|168489607|ref|ZP_02713806.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae SP195]
 gi|168491344|ref|ZP_02715487.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC0288-04]
 gi|168575904|ref|ZP_02721819.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae MLV-016]
 gi|169833631|ref|YP_001694864.1| GMP synthase [Streptococcus pneumoniae Hungary19A-6]
 gi|194397166|ref|YP_002038080.1| GMP synthase [Streptococcus pneumoniae G54]
 gi|225859208|ref|YP_002740718.1| GMP synthase [Streptococcus pneumoniae 70585]
 gi|225860783|ref|YP_002742292.1| GMP synthase [Streptococcus pneumoniae Taiwan19F-14]
 gi|237651096|ref|ZP_04525348.1| GMP synthase [Streptococcus pneumoniae CCRI 1974]
 gi|237821029|ref|ZP_04596874.1| GMP synthase [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229110|ref|ZP_06962791.1| GMP synthase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254966|ref|ZP_06978552.1| GMP synthase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502600|ref|YP_003724540.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|307068096|ref|YP_003877062.1| GMP synthase [Streptococcus pneumoniae AP200]
 gi|307126986|ref|YP_003879017.1| GMP synthase [Streptococcus pneumoniae 670-6B]
 gi|54037232|sp|P64298|GUAA_STRR6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041336|sp|P64297|GUAA_STRPN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122278374|sp|Q04JQ8|GUAA_STRP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739747|sp|B5E5U0|GUAA_STRP4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739753|sp|B1ICM9|GUAA_STRPI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800117|sp|C1C842|GUAA_STRP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800122|sp|C1CQS0|GUAA_STRZT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|14972933|gb|AAK75539.1| GMP synthase [Streptococcus pneumoniae TIGR4]
 gi|15458943|gb|AAL00104.1| Glutamine amidotransferase [Streptococcus pneumoniae R6]
 gi|116077050|gb|ABJ54770.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae D39]
 gi|147756553|gb|EDK63594.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP11-BS70]
 gi|147759131|gb|EDK66125.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP14-BS69]
 gi|147761089|gb|EDK68057.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP18-BS74]
 gi|147922808|gb|EDK73924.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP3-BS71]
 gi|147924392|gb|EDK75482.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP6-BS73]
 gi|147931258|gb|EDK82237.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996133|gb|ACA36745.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae Hungary19A-6]
 gi|183571993|gb|EDT92521.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae SP195]
 gi|183574391|gb|EDT94919.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC0288-04]
 gi|183578306|gb|EDT98834.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae MLV-016]
 gi|194356833|gb|ACF55281.1| GMP synthase [Streptococcus pneumoniae G54]
 gi|225720527|gb|ACO16381.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae 70585]
 gi|225727150|gb|ACO23001.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238195|gb|ADI69326.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|301794473|emb|CBW36911.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae
           INV104]
 gi|301800299|emb|CBW32924.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae
           OXC141]
 gi|306409633|gb|ADM85060.1| GMP synthase, PP-ATPase domain/subunit [Streptococcus pneumoniae
           AP200]
 gi|306484048|gb|ADM90917.1| GMP synthase [Streptococcus pneumoniae 670-6B]
 gi|327389631|gb|EGE87976.1| GMP synthase [Streptococcus pneumoniae GA04375]
 gi|332073751|gb|EGI84230.1| GMP synthase [Streptococcus pneumoniae GA17570]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|293400608|ref|ZP_06644753.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305634|gb|EFE46878.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 315

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 30/134 (22%)

Query: 22  RVVVAMSGGVDSSV---VAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS V      +        ++V+G+ ++L       +             
Sbjct: 25  RIGVGVSGGKDSMVLLTALHMYAKFCDRRFEVVGIHIKLGFPNMEFQE------------ 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVT 133
             + C+ + +  +  D  + +                     + C+   KF         
Sbjct: 73  VTQFCEHLGIEFHQID-SKVY---------EILKRNLDKNGRIRCSLCSKFKKATVNQAA 122

Query: 134 RQLGADVLATGHYI 147
           + L  + +A GH+ 
Sbjct: 123 KDLHCNKVAFGHHS 136


>gi|182679806|ref|YP_001833952.1| GMP synthase, large subunit [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635689|gb|ACB96463.1| GMP synthase, large subunit [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 533

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDS+V A L+    G  +  V            R G       ++      
Sbjct: 232 RVLCGLSGGVDSAVAALLIHEAIGDRLTCVF-----VDHGLLRHGEAEEIVSLFRG---- 282

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL 136
              N+       ++ F +A          AG   +   +  R +     +       + +
Sbjct: 283 -HYNIPLIHAQAQDLFLDA---------LAG---VSDPEEKRRIIGRLFIETFEAEAKTI 329

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            +D      ++       D  +       P    +   + +    ++    L  PL ++ 
Sbjct: 330 ASDGKGVPEFLGQGTLYPDVIESVSFTGGPSVTIKSH-HNVGGLPERMNMKLVEPLRELF 388

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L RE+GL 
Sbjct: 389 KDEVRELGRELGLP 402


>gi|168493347|ref|ZP_02717490.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC3059-06]
 gi|183576575|gb|EDT97103.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC3059-06]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++ +SGGVDSSVV  LL++  G  +I +            RKG      D+     
Sbjct: 225 DKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGLLRKGEADQVMDM----- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     ++    D  +RF + +                 V       F D    ++    
Sbjct: 275 LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKDV 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +  G D  +     +           +    +    +L  PL  + K+
Sbjct: 328 KFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFELIEPLNTLYKD 377

Query: 199 SVRDLAREMGLD 210
            VR L  E+G+ 
Sbjct: 378 EVRALGTELGMP 389


>gi|161870026|ref|YP_001599195.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442]
 gi|161595579|gb|ABX73239.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442]
          Length = 436

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 43/237 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     +  VA+SGG+DS V+  LL    KR G+    + +            G    
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVPEALHIH----------HGLSPR 64

Query: 70  GQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D  D  +  CD + V           +  V        AA              +++ 
Sbjct: 65  ADDWADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAA 108

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                   G DVLA  H+        DD     ++             +          +
Sbjct: 109 FAEK----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGI 157

Query: 189 RF-PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
            + PL    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 158 IWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|150025936|ref|YP_001296762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Flavobacterium psychrophilum JIP02/86]
 gi|226738457|sp|A6H0T6|GUAA_FLAPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149772477|emb|CAL43960.1| GMP synthase [glutamine-hydrolyzing] [Flavobacterium psychrophilum
           JIP02/86]
          Length = 509

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +L +  +D +VV+ +SGGVDS+V A LL + 
Sbjct: 206 ELKEKLQDDKVVLGLSGGVDSTVAAVLLHQA 236


>gi|260893667|ref|YP_003239764.1| argininosuccinate synthase [Ammonifex degensii KC4]
 gi|260865808|gb|ACX52914.1| argininosuccinate synthase [Ammonifex degensii KC4]
          Length = 399

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   LK + GY+VI +T+ L      +  +           A+  
Sbjct: 3   KKVVLAYSGGLDTSIIIPWLKENYGYEVIALTVDLGQGEDLAAIREKALRSGA---AKA- 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   YV D  E F    + P           Y  G          R +    L+ V
Sbjct: 59  --------YVVDAREEFVREYVFPVLKAGAIYEGKYLLGTAMA------RPLIAKKLVEV 104

Query: 133 TRQLGADVLATG 144
            RQ GA+ +A G
Sbjct: 105 ARQEGAEAVAHG 116


>gi|126695374|ref|YP_001090260.1| GMP synthase [Prochlorococcus marinus str. MIT 9301]
 gi|226739659|sp|A3PA84|GUAA_PROM0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126542417|gb|ABO16659.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 528

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D    
Sbjct: 224 NKKVLLALSGGVDSSTLAFLLNKA----IGNQLTCMFIDQGFMRKGEPEFLMNFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               ++     +  ERF              G T     +  R +            + +
Sbjct: 276 -KKFHIKVEYINARERFIAK---------LKGIT---DPEQKRKIIGEEFIRVFEEESNR 322

Query: 136 LG-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           LG    LA G  Y       G +   +      + ++   +  +    +     L  PL 
Sbjct: 323 LGPFQYLAQGTLYPDVIESAGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLR 380

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR +   +GL 
Sbjct: 381 KLFKDEVRKVGGALGLP 397


>gi|15669347|ref|NP_248152.1| hypothetical protein MJ_1157 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501587|sp|Q58558|Y1157_METJA RecName: Full=CTU1/ATPBD3 family protein MJ1157
 gi|1592323|gb|AAB99161.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 341

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 41/201 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-------SKRKGSCCAGQD 72
           ++++ + +SGG DS V+A +LK            L+                        
Sbjct: 82  NVKIGIGISGGKDSLVMAYILKE-----------LFKHIPNAKLICFFVDEGIKGFRNIA 130

Query: 73  VYDARRVCDTINVSHYVFDYEER----FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
               +  C   N+   +  +E+         V   + S    G+   PC  C    ++  
Sbjct: 131 EKYVKEFCKEYNLDLKIIKFEDEIGYTLDEIVKNDYLSKLNIGK---PCSFCGVVRRY-L 186

Query: 129 LLSVTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           L     + G D LA GH    + ++ L    +G  + I+    + E     F+       
Sbjct: 187 LNKHALKEGCDYLAIGHNLDDFCQTILMNYVEGNIKNIIQFGKEFEGG--GFVKRIK--- 241

Query: 185 LCDLRFPLGDMKKESVRDLAR 205
                 PL  + +E V+  A 
Sbjct: 242 ------PLKLIPEEEVKLYAE 256


>gi|325694516|gb|EGD36425.1| GMP synthase [Streptococcus sanguinis SK150]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +I +            RKG      D+     
Sbjct: 225 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGLLRKGEADQVMDM----- 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     ++    D  +RF + +                 V       F D    ++    
Sbjct: 275 LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV-----FDD--EASKLKDV 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +  G D  +     +           +    +    +L  PL  + K+
Sbjct: 328 KFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMQFELIEPLNTLYKD 377

Query: 199 SVRDLAREMGLD 210
            VR L  E+G+ 
Sbjct: 378 EVRALGTELGMP 389


>gi|317482305|ref|ZP_07941326.1| GMP synthase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916321|gb|EFV37722.1| GMP synthase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|311106916|ref|YP_003979769.1| GMP synthase (glutamine-hydrolyzing) [Achromobacter xylosoxidans
           A8]
 gi|310761605|gb|ADP17054.1| GMP synthase (glutamine-hydrolyzing) [Achromobacter xylosoxidans
           A8]
          Length = 530

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 25/189 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ +  G  +  V     +       +G           +   +
Sbjct: 228 VILGLSGGVDSSVAAALIHKAIGDQLTCVF---VDHGLLRLDEGKQVM-------QTFAE 277

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V     D   +F             AG   +   +  R +   + + V ++      
Sbjct: 278 NMGVKIIHVDATAQFMGK---------LAG---VADPEAKRKIIGREFVEVFQEQAGKQQ 325

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +     +  +Y            +   ++   +  +          L  PL ++ K+ VR
Sbjct: 326 SAKWLAQGTIYPDVIESAGAKTGKATSIKSHHN--VGGLPDTLNLQLLEPLRELFKDEVR 383

Query: 202 DLAREMGLD 210
           +L   +GL 
Sbjct: 384 ELGVALGLP 392


>gi|224282873|ref|ZP_03646195.1| GMP synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287318|ref|YP_003938576.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium bifidum S17]
 gi|313140034|ref|ZP_07802227.1| GMP synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251254|gb|ADO53002.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium bifidum S17]
 gi|313132544|gb|EFR50161.1| GMP synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPKDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|150399415|ref|YP_001323182.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           vannielii SB]
 gi|150012118|gb|ABR54570.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           vannielii SB]
          Length = 385

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 36/204 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +S G+DS V A ++ + G  ++ + L+         +K          +A+  
Sbjct: 184 QGKVLVLLSDGIDSPVAAYMMAKRGCKLVLLHLKTSEEGLEKTKKLYDVLSDFDPEAK-- 241

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                      D+ E      I    +     +    C+ C +T     +L    +    
Sbjct: 242 -------FIHIDFTEELLR--IKNDLTKIEREK--YTCLFCKKT-----MLRTAER---- 281

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                 Y +    +  D   +          ++       T    L     PL  + K  
Sbjct: 282 ---HASYQKCDAIINGDNMGQV----ASQTLKNLRVVSEGTKYPILR----PLIGLDKVE 330

Query: 200 VRDLAREMGLDIADKSDSQDI-CF 222
           + ++AR++G    D S S++I CF
Sbjct: 331 IMNIARKIG--TFDISISKEISCF 352


>gi|254284393|ref|ZP_04959361.1| argininosuccinate synthase [gamma proteobacterium NOR51-B]
 gi|219680596|gb|EED36945.1| argininosuccinate synthase [gamma proteobacterium NOR51-B]
          Length = 406

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+   G +V+  T                  G++V  AR   
Sbjct: 6   KVVLAYSGGLDTSVIVRWLQDTYGCEVVTFT-------------ADIGQGEEVEPAREKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G          R +    L+ +
Sbjct: 53  RALGVKEIYIDDLREEFVRDYVYPMFRANTVYEGEYLLG------TSIARPLIARRLIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|254302954|ref|ZP_04970312.1| NAD(+) synthase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323146|gb|EDK88396.1| NAD(+) synthase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 258

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLGINSKTIE---------ITDMIDAYFKNEKEATSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|73541543|ref|YP_296063.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ralstonia eutropha JMP134]
 gi|91206824|sp|Q470G4|GUAA_RALEJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72118956|gb|AAZ61219.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia eutropha JMP134]
          Length = 539

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 35/203 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D  V++ +SGGVDSSV AAL+ R  G  +  V                   G+ 
Sbjct: 216 IRKQVGDEEVILGLSGGVDSSVAAALIHRAIGDQLTCVF--------VDHGLLRLDEGKM 267

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V D       ++      D  E+F           + AG T     +  R +   + + V
Sbjct: 268 VMD--MFAGRLHAKVVHIDASEQFL---------GHLAGVT---DPEQKRKIIGREFVEV 313

Query: 133 ----TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                ++L  A  LA G      +  G    ++    +           +    +     
Sbjct: 314 FQAEAKKLSNAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLK 366

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL D+ K+ VR L   +GL 
Sbjct: 367 LLEPLRDLFKDEVRQLGVALGLP 389


>gi|293365279|ref|ZP_06611996.1| GMP synthase [Streptococcus oralis ATCC 35037]
 gi|291316729|gb|EFE57165.1| GMP synthase [Streptococcus oralis ATCC 35037]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|225857075|ref|YP_002738586.1| GMP synthase [Streptococcus pneumoniae P1031]
 gi|254800121|sp|C1CLE8|GUAA_STRZP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225725470|gb|ACO21322.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae P1031]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|168486141|ref|ZP_02710649.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1087-00]
 gi|183570763|gb|EDT91291.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1087-00]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|170289348|ref|YP_001739586.1| NAD+ synthetase [Thermotoga sp. RQ2]
 gi|281412952|ref|YP_003347031.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
 gi|170176851|gb|ACB09903.1| NAD+ synthetase [Thermotoga sp. RQ2]
 gi|281374055|gb|ADA67617.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
          Length = 576

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VA +     G + V GV +                + + + DA+ +
Sbjct: 317 KVVIGLSGGMDSSLVAVIATEALGKENVKGVLM-----------PSMYTSKESIEDAQTL 365

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQL 136
              + +  ++    + F +   +       AG    P +        ++ + L++++ + 
Sbjct: 366 AKNLGIETFIIPITDVFHS--YLETLKGVFAGR--EPDITEENLQARIRGNYLMALSNKF 421

Query: 137 GADVLATG 144
           G  VL TG
Sbjct: 422 GWLVLTTG 429


>gi|88603431|ref|YP_503609.1| hypothetical protein Mhun_2185 [Methanospirillum hungatei JF-1]
 gi|88188893|gb|ABD41890.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 270

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 59/247 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++A SGGVDS+++A L +      IG   +            G     + V  A    + 
Sbjct: 21  LIAYSGGVDSTLLAVLTRET----IGAEHMH------CVLVDGPEVPRRAVTAAINQSEY 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQLGAD 139
           + +   V       R  V  PF+          P   C R  K      L  +    G  
Sbjct: 71  LKIPLTV-------REGV--PFSRDLQK---TNPHDRC-RHCKLGTYTILKQIADDTGCT 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A G          D G+ R  +         +++              F +  + K+ 
Sbjct: 118 YIADGANAS------DLGEHRPGI---------EAFSSCGVIHP------FIMAGITKQD 156

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG----- 254
           +RD+A+ M L   DK  S   C   +  Y + +      +  +G+ +  +   +G     
Sbjct: 157 IRDIAKSMDLPFWDKPSS--ACLYSRIPYGEEITDEKLRMIEKGEELLSD---IGIRQAR 211

Query: 255 -RHNGII 260
            RH+G+I
Sbjct: 212 VRHHGLI 218


>gi|15644009|ref|NP_229058.1| NAD synthetase [Thermotoga maritima MSB8]
 gi|8928238|sp|Q9X0Y0|NADE2_THEMA RecName: Full=Probable glutamine-dependent NAD(+) synthetase;
           AltName: Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|4981808|gb|AAD36328.1|AE001780_12 NH(3)-dependent NAD(+) synthetase [Thermotoga maritima MSB8]
          Length = 576

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VA +     G + V GV +                + + + DA+ +
Sbjct: 317 KVVIGLSGGMDSSLVAVIATEALGKENVKGVLM-----------PSMYTSKESIEDAQTL 365

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQL 136
              + +  ++    + F +   +       AG    P +        ++ + L++++ + 
Sbjct: 366 AKNLGIETFIIPITDVFHS--YLETLKGVFAGR--EPDITEENLQARIRGNYLMALSNKF 421

Query: 137 GADVLATG 144
           G  VL TG
Sbjct: 422 GWLVLTTG 429


>gi|315613049|ref|ZP_07887960.1| GMP synthase [Streptococcus sanguinis ATCC 49296]
 gi|315315159|gb|EFU63200.1| GMP synthase [Streptococcus sanguinis ATCC 49296]
          Length = 520

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|210610918|ref|ZP_03288643.1| hypothetical protein CLONEX_00833 [Clostridium nexile DSM 1787]
 gi|210152218|gb|EEA83225.1| hypothetical protein CLONEX_00833 [Clostridium nexile DSM 1787]
          Length = 514

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 34/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G         +   
Sbjct: 215 DGKVLCALSGGVDSSVAAVMLSKAVGSQLTCVF---VDHGLLRKNEGDEVEAIFGPEG-- 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                 ++    + +ERF   +              +   +  R +             +
Sbjct: 270 ---NYELNFIRVNAQERFYAKLKG------------VEDPEAKRKIIGEEFIRVFEEEAK 314

Query: 135 QLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++GA D L  G      +  G  G+          + +               ++  PL 
Sbjct: 315 KIGAVDFLVQGTIYPDIVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPLR 366

Query: 194 DMKKESVRDLAREMGLD 210
           D+ K+ VR    E+G+ 
Sbjct: 367 DLFKDEVRKAGLELGIP 383


>gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
 gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
          Length = 462

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 30/135 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL--KRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V+V +SGG DS  +  LL  KR   G +   +        + S             
Sbjct: 18  EGKKVLVGVSGGPDSLALLHLLWKKRKVWGAEPAAIHFDHMFRGEES-----------YQ 66

Query: 75  DARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +AR V   C+  N+   +       R  V      S  + +T        R  ++     
Sbjct: 67  EARFVQSFCEERNIPFEMR------REDVSAYMKESGKSSQTAA------RECRYRFFEE 114

Query: 132 VTRQLGADVLATGHY 146
             +  GA  LA GH+
Sbjct: 115 AMKASGASYLALGHH 129


>gi|329896217|ref|ZP_08271395.1| Argininosuccinate synthase [gamma proteobacterium IMCC3088]
 gi|328921888|gb|EGG29255.1| Argininosuccinate synthase [gamma proteobacterium IMCC3088]
          Length = 406

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVRWLQDT-YNCEVVTF-----------TADIGQGEEVEPARAKAE 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  ALGVKEIYIEDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LVEIA 107

Query: 134 RQLGADVLATG 144
            +  AD ++ G
Sbjct: 108 NETNADAISHG 118


>gi|294814542|ref|ZP_06773185.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
 gi|294327141|gb|EFG08784.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
          Length = 551

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 29/196 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   V
Sbjct: 247 KRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 297

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T  V   V D EERF             A    +   +  R +   + + V  Q  A+
Sbjct: 298 AAT-GVQLKVVDAEERF------------LAALAGVSDPEEKRKIIGREFIRVFEQAQAE 344

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++A G      +     G     +            +   + +    +     L  PL  
Sbjct: 345 IVAEGSADGEEVAFLVQGTLYPDVVESGGGTGTANIKSH-HNVGGLPEDLEFQLVEPLRQ 403

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + +E+GL 
Sbjct: 404 LFKDEVRMVGQELGLP 419


>gi|262306075|gb|ACY45630.1| gln amidotransferase [Hexagenia limbata]
          Length = 197

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI V +     RK   +K               
Sbjct: 45  KVLLLVSGGVDSTVCAALLHKALREDQVIAVHIDNGFMRKGESQKVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERF 96
            + + +   V +  ++F
Sbjct: 95  -EKLGLHLKVVNAAQQF 110


>gi|228995353|ref|ZP_04155038.1| hypothetical protein bpmyx0001_59560 [Bacillus pseudomycoides DSM
           12442]
 gi|228764395|gb|EEM13258.1| hypothetical protein bpmyx0001_59560 [Bacillus pseudomycoides DSM
           12442]
          Length = 221

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 29/196 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + + +V  SGG DS+       +   +V  VT   YN R   K +  C        A  
Sbjct: 3   SNDKAIVVFSGGQDSTTCLFWAMQQFAEVEAVTF-NYNQR--HKLEIDC--------AAE 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS------V 132
           + + + + H V D      N +     +      T   C   +  V   +LL       +
Sbjct: 52  IANELGIKHTVLDMSLL--NQLAPNALTRTDMEITHEECELPSTFVDGRNLLFLSFAAVL 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +Q+GA  + TG           D       CR + ++        +     +     PL
Sbjct: 110 AKQVGAHHIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLSMDYPFVIHT--PL 159

Query: 193 GDMKKESVRDLAREMG 208
             + K     +A E+G
Sbjct: 160 MWIDKAETWKIADELG 175


>gi|254284409|ref|ZP_04959377.1| NAD+ synthetase [gamma proteobacterium NOR51-B]
 gi|219680612|gb|EED36961.1| NAD+ synthetase [gamma proteobacterium NOR51-B]
          Length = 537

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  AL     G D V  V +                A   + DA    
Sbjct: 284 VVLGLSGGIDSAVTLALAVDALGADRVHAVMM-----------PFRYTASISIEDAEAEA 332

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
            T+ V +     E  +     +   S   AG  P 
Sbjct: 333 LTLGVDYRSISIEPIYEA--FMASLSEEFAGLLPN 365


>gi|197123267|ref|YP_002135218.1| NAD synthetase [Anaeromyxobacter sp. K]
 gi|196173116|gb|ACG74089.1| NAD+ synthetase [Anaeromyxobacter sp. K]
          Length = 323

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 72/216 (33%), Gaps = 44/216 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV MSGG+DSSVVA+L  R  G D V+G+ +     R +S        G  +   R +  
Sbjct: 36  VVGMSGGIDSSVVASLCVRALGPDRVVGLLM---PERDSS--------GDALRLGRMLAA 84

Query: 82  TINVSHYVFDYEERFRN--------AVIVPFASSYAAG---ETPLPCVDCNRTVKFSDL- 129
            + + H V D                 I      Y  G   +  LP +     +  + L 
Sbjct: 85  HLGIRHVVEDIAPALEGLGCYARQLEAIRMAVPEYGDGWRCKLTLPSLLEGERLNITSLT 144

Query: 130 -------LSVTRQLGADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSY 175
                      R   A  L    AT    R+R  +      R          R   DQ +
Sbjct: 145 VSDPRGSQRTVRMPPAAYLQMVAATNFKQRTRKMMEYYHADRLNYAVAGTPNRLEYDQGF 204

Query: 176 FLFATTQQQLCDLRF-PLGDMKKESVRDLAREMGLD 210
           F+            F P+  + K  V  LA  +G+ 
Sbjct: 205 FVKQGDGA----ADFKPIAHLYKTQVYALAEHLGVP 236


>gi|149925238|ref|ZP_01913525.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Plesiocystis pacifica SIR-1]
 gi|149813888|gb|EDM73547.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Plesiocystis pacifica SIR-1]
          Length = 520

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 63/196 (32%), Gaps = 40/196 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGGVDSSV AAL+++     IG  L          RK      + +++     + 
Sbjct: 231 VICGLSGGVDSSVAAALVEKA----IGDRLHCIFVDNGLLRKNERQQVEAMFN-----ER 281

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
           ++    V D   +F      +  P       G T                    + L GA
Sbjct: 282 LHNPLVVADAGAQFLEQLAGITDPEVKRKRIGATF-----------IDVFDDKAKGLGGA 330

Query: 139 DVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           D L         I S    G     +         E+     +     +       PL +
Sbjct: 331 DFLVQGTLYPDVIESVSARGPSATIKTHHNVGGLPEK-----MNMLVVE-------PLRE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L   +GL 
Sbjct: 379 LFKDEVRRLGLHLGLP 394


>gi|150403146|ref|YP_001330440.1| exsB protein [Methanococcus maripaludis C7]
 gi|167016436|sp|A6VIL3|QUEC_METM7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|150034176|gb|ABR66289.1| exsB protein [Methanococcus maripaludis C7]
          Length = 233

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 55/223 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR +  +SGG+DS+V +   K + YD+  VT             G     Q++  A+++ 
Sbjct: 1   MRAICVLSGGLDSAVTSLAAKFENYDITTVTF----------NYGQMALNQEIKSAKKIS 50

Query: 81  DTINVSHYVFD--YEERFRNAVIVPFASSYAAGETPLPC------------------VDC 120
           + +N  H+V D  + + F         S    GE P P                   V  
Sbjct: 51  EILNADHHVIDINFVKEFSK-------SGLNTGEIPEPEKEDLDDFEKSEKTMKAVWVPA 103

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              + FS        +GA+ + +G      +   D+      + R          F  + 
Sbjct: 104 RNMIMFSIASGFAEGIGAEKIFSGLNKEEGVTFPDNTPE--FIER----------FNKSL 151

Query: 181 TQQQLCDLRF--PLGDMKKESVRDLARE----MGLDIADKSDS 217
               L  ++   PL ++ K  +  L +E    + L++   S S
Sbjct: 152 EYGTLNKVKMVAPLYELNKPEIAKLGKELEVKLDLEVLKYSYS 194


>gi|317124173|ref|YP_004098285.1| GMP synthase (glutamine-hydrolyzing) [Intrasporangium calvum DSM
           43043]
 gi|315588261|gb|ADU47558.1| GMP synthase (glutamine-hydrolyzing) [Intrasporangium calvum DSM
           43043]
          Length = 527

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 66/196 (33%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDAR 77
           + RV+ A+SGGVDSSV AAL++R  G  +  V            R+G      +D  +A 
Sbjct: 222 EDRVLCALSGGVDSSVAAALVQRAVGDQLTCVF-----VDHGLLREGEAEQVEKDFVEAT 276

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                  V   V D +ERF  A   V  P A     GE  +   +               
Sbjct: 277 ------GVDLVVVDAQERFLTALAGVTEPEAKRKIIGEQFIRVFEQAARDVVGSHAD--E 328

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +     L  G      +  G  G       +           +          L  PL  
Sbjct: 329 EHPVKWLVQGTLYPDVVESG--GGEGAANIKSHHN-------VGGLPDDLQFKLIEPLRT 379

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+G+ 
Sbjct: 380 LFKDEVRQVGLELGVP 395


>gi|213419706|ref|ZP_03352772.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 323

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +V++ +SGGVDSSV A LL R  G ++  V 
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVF 259


>gi|254392021|ref|ZP_05007212.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
 gi|326442932|ref|ZP_08217666.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
 gi|197705699|gb|EDY51511.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
          Length = 528

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 29/196 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   V
Sbjct: 224 KRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T  V   V D EERF             A    +   +  R +   + + V  Q  A+
Sbjct: 275 AAT-GVQLKVVDAEERF------------LAALAGVSDPEEKRKIIGREFIRVFEQAQAE 321

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++A G      +     G     +            +   + +    +     L  PL  
Sbjct: 322 IVAEGSADGEEVAFLVQGTLYPDVVESGGGTGTANIKSH-HNVGGLPEDLEFQLVEPLRQ 380

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + +E+GL 
Sbjct: 381 LFKDEVRMVGQELGLP 396


>gi|297618762|ref|YP_003706867.1| N-acetyl sugar amidotransferase [Methanococcus voltae A3]
 gi|297377739|gb|ADI35894.1| N-acetyl sugar amidotransferase [Methanococcus voltae A3]
          Length = 381

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 29/158 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGG DS+ VA L+K+ G   + V +   +NS  + K   +              + 
Sbjct: 73  IIGVSGGADSTYVAYLVKKLGLRPLAVHVDNGWNSDLSVKNIENTL------------NK 120

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +    +V D+ + FR+        SY    TP   V  +  + ++ +  +  +     
Sbjct: 121 LGIELYTHVLDW-DEFRD-----LQLSYIKSSTPDLEVPTDHAI-YAVMFKIASKNNIKY 173

Query: 141 LATGHYIRSRLYV-------GDDGKRRRIMCRPMDLER 171
           + +G+  ++   +       G D K    + +     +
Sbjct: 174 ILSGYNYKTESILPPTWSNGGHDWKYISYIQKTFGTRK 211


>gi|94968820|ref|YP_590868.1| GMP synthase [Candidatus Koribacter versatilis Ellin345]
 gi|94550870|gb|ABF40794.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 515

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 52/213 (24%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D  V+  +SGGVDSSV A L+ R  G  +  + +     R              
Sbjct: 208 IRKQVGDGHVICGLSGGVDSSVAATLVHRAIGKQLTCIFVNNGVLRMNEFESVQTNLR-- 265

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLS 131
                   D + ++    D  +RF             AG T P                 
Sbjct: 266 --------DKLGLNIVGVDATDRFLGK---------LAGVTEPE---------------K 293

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRP---MDLERDQSYF-----------L 177
             + +G + +A   +      +  +  +   + +     D+   QS             +
Sbjct: 294 KRKIIGNEFIAV--FEEEAHRIEQESGKVDWLVQGTLYPDVIESQSVRGPSQVIKSHHNV 351

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++    L  PL D+ K+ VR + R++G+ 
Sbjct: 352 GGLPEKMKLKLIEPLRDLFKDEVRRIGRDLGMP 384


>gi|91772881|ref|YP_565573.1| argininosuccinate synthase [Methanococcoides burtonii DSM 6242]
 gi|119361289|sp|Q12XK3|ASSY_METBU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|91711896|gb|ABE51823.1| Argininosuccinate synthase [Methanococcoides burtonii DSM 6242]
          Length = 394

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V +A SGG+D+S+   LLK + GYD VI            +         +DV  A  
Sbjct: 3   KKVALAYSGGLDTSICIPLLKEEYGYDEVI------------TVAVDVGQPKEDVAQAEE 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               I+  H+  D  E F N  I P   +    E  +      R +    ++ +  Q GA
Sbjct: 51  KAKKISDKHFTLDVREEFVNDYIFPLIRANGDYEGYVMGTSIARPLIAKKVVEIAEQEGA 110

Query: 139 DVLATG 144
             LA G
Sbjct: 111 VALAHG 116


>gi|57234088|ref|YP_181837.1| glutamine-dependent NAD(+) synthetase [Dehalococcoides ethenogenes
           195]
 gi|57224536|gb|AAW39593.1| glutamine-dependent NAD(+) synthetase [Dehalococcoides ethenogenes
           195]
          Length = 566

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V +A  L + D        +VV+ +SGG+DSS+VAA+     G D V+GV +        
Sbjct: 288 VYQALLLGTKDYINKNGFKKVVIGLSGGIDSSLVAAIATDALGADNVVGVIM-------- 339

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
                   +   + D+ R+ + + +       +  F++   +   S   AG
Sbjct: 340 ---PSRYSSAGSISDSLRLAENLGIKTLQIPIDPIFKS--FLSTLSEVFAG 385


>gi|167739138|ref|ZP_02411912.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 14]
 gi|217421659|ref|ZP_03453163.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           576]
 gi|254297240|ref|ZP_04964693.1| GMP synthase [Burkholderia pseudomallei 406e]
 gi|157807404|gb|EDO84574.1| GMP synthase [Burkholderia pseudomallei 406e]
 gi|217395401|gb|EEC35419.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           576]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F   +       +             R +   + + V    
Sbjct: 283 -------------VDASEQFLGHLAGVADPEHK------------RKIIGREFVEVFQTE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLTNAKWLAQGTIYPDVIESGGAKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|332158432|ref|YP_004423711.1| hypothetical protein PNA2_0791 [Pyrococcus sp. NA2]
 gi|331033895|gb|AEC51707.1| hypothetical protein PNA2_0791 [Pyrococcus sp. NA2]
          Length = 217

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V    SGG DSS+ A LL + GY+V  VT+                   +   AR     
Sbjct: 23  VYHLFSGGKDSSLAAWLLNKIGYEVRLVTITF-------------GTLDNWKYARETARI 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           +   H V +  +   +  +         G 
Sbjct: 70  LGFEHEVIELPKSILDRAVEMCIQDGKPGR 99


>gi|306820973|ref|ZP_07454593.1| PP-loop family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551087|gb|EFM39058.1| PP-loop family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 285

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 31/138 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  R+ VA+SGG DS ++A L   LK  G +V       +++       G         
Sbjct: 50  NEGDRIAVAISGGKDSMLMAKLFQELKEHG-NV------NFDAEFVVMDPGY------HK 96

Query: 75  DARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           D R++    C  + +   +FD        V     +   AG+   PC  C   ++   L 
Sbjct: 97  DIRKLLEENCKYLEIPIKIFD------TDVFA--IADKIAGD--YPCYMC-AKMRRGALY 145

Query: 131 SVTRQLGADVLATGHYIR 148
           ++  QL  + LA GH+  
Sbjct: 146 NIAEQLKCNKLALGHHFN 163


>gi|254516593|ref|ZP_05128652.1| argininosuccinate synthase [gamma proteobacterium NOR5-3]
 gi|219675016|gb|EED31383.1| argininosuccinate synthase [gamma proteobacterium NOR5-3]
          Length = 406

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVIVRWLQDN-YACEVVTF-----------TADIGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  KALGVKEIYIEDLREEFVRDYVYPMFRANTIYEGEYLLGTSIARPLIAKR------LVDI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ATETGADAISHG 118


>gi|325958250|ref|YP_004289716.1| hypothetical protein Metbo_0492 [Methanobacterium sp. AL-21]
 gi|325329682|gb|ADZ08744.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21]
          Length = 311

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 25/138 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-----LKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           K  +V++ +SGG DS  V  L     LK  G  D++ VT+                  + 
Sbjct: 48  KGDKVLLGLSGGKDS--VMLLDILSTLKNRGIIDLVAVTI---------DEGIEGYREEG 96

Query: 73  VYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           V  A +  +   V H V  +++ F    + +I   +           C  C    ++   
Sbjct: 97  VELAIKNAEKYGVEHRVVSFKQYFGTTLDKIIQNNSLDVRR----NACTYCGVFRRW-IF 151

Query: 130 LSVTRQLGADVLATGHYI 147
             V++++GA  +ATGH +
Sbjct: 152 NRVSKEVGATKIATGHNL 169


>gi|325290764|ref|YP_004266945.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966165|gb|ADY56944.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 510

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +     +V+ A+SGGVDSSV A L+ +  G  +  + +     RK    +      +
Sbjct: 208 EIRQRVGGKKVLCALSGGVDSSVAAVLVHKAIGDQLTCIYVDHGFMRKDESVQVKKTFTE 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             +        +N+     D  ERF   V                 +  N  ++      
Sbjct: 268 QFH--------LNLDFVEAD--ERFMAKVSGVSEPEEKRK------LIGNEFIR--LFED 309

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             R+LG  D L  G      +  G +                    +    +    +L  
Sbjct: 310 EARKLGQVDFLVQGTLYPDIVESGTETAETIKTHHN----------VGGLPEDMKFELIE 359

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +  E+GL 
Sbjct: 360 PLRMLFKDEVRKVGIELGLP 379


>gi|308172519|ref|YP_003919224.1| GMP synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307605383|emb|CBI41754.1| GMP synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 513

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D LA G        + + G       +           +    +    +L  
Sbjct: 313 EAVKLKGIDYLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGTELGIP 382


>gi|297516315|ref|ZP_06934701.1| GMP synthase [Escherichia coli OP50]
          Length = 267

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +V++ +SGGVDSSV A LL R  G ++  V 
Sbjct: 227 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVF 259


>gi|283465293|gb|ADB23129.1| GMP synthase [Rhodopirellula baltica]
          Length = 235

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   + RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 141 IRKQVGNKRVICGLSGGVDSSVVAALL----YKAIG 172


>gi|134045269|ref|YP_001096755.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           maripaludis C5]
 gi|132662894|gb|ABO34540.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           maripaludis C5]
          Length = 383

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 40/206 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V +S G+DS V A ++ + G  ++ + ++  +      +K +        +A+ V
Sbjct: 181 QGRVLVLLSDGIDSPVSAYMMAKRGCKLLLLHMKTSDEGLEKTQKLADVLSDFDPEAKFV 240

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGA 138
                      D++E      I   A           C+ C + + K ++     +    
Sbjct: 241 ---------YMDFKEELEK--IK--AELTEINRDKYTCLYCKKYMLKMAE--KYAKWHKC 285

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-LRFPLGDMKK 197
           D +            GD+  +             Q+        + +   +  PL  + K
Sbjct: 286 DAI----------INGDNMGQVAS----------QTLKNLRVISEGIDYPILRPLIGLDK 325

Query: 198 ESVRDLAREMGLDIADKSDSQDI-CF 222
             + D+AR++G      S S+++ CF
Sbjct: 326 IEIMDIARKIG--TFGISTSKEVSCF 349


>gi|50365158|ref|YP_053583.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mesoplasma florum L1]
 gi|81391861|sp|Q6F1C4|GUAA_MESFL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50363714|gb|AAT75699.1| GMP synthase (glutamine hydrolyzing) [Mesoplasma florum L1]
          Length = 513

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +  KD +V++ +SGGVDSSV AA++ K  G  +  +              G     +
Sbjct: 209 EIKETVKDKQVILGLSGGVDSSVAAAIIGKAIGKQLTCIF----------VDTGLLRKNE 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--FSDL 129
            +   +      +++  + +  + F +            G    P        K      
Sbjct: 259 TIEVMKAYETNFDINIKLVEASDLFFSE---------LKGI-KEPEAKRKIIGKCFIDVF 308

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               RQ   AD LA G      +     G   + +    +        +    +     L
Sbjct: 309 TDAARQHKDADFLAQGTIYPDVIESSSHGASSKTIKSHHN--------VGGLPEDLKFRL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  ++GL 
Sbjct: 361 IEPLRNLFKDEVRQVGFKLGLP 382


>gi|14591444|ref|NP_143524.1| hypothetical protein PH1680 [Pyrococcus horikoshii OT3]
 gi|3258109|dbj|BAA30792.1| 320aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 320

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 33/205 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            K  R+ VA+SGG DS V+  LL    K+  ++++ +T+                  + +
Sbjct: 45  KKGERIGVAVSGGKDSVVLLHLLAKLRKKFPFEIVAITI---------DEGIKGYRDKSI 95

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSD 128
             A++  + + V H+++ +        I            A GE    C  C    ++  
Sbjct: 96  KVAKKNAELLGVEHHIYRF-----KDYIGFTLDETVEIMGARGERLGACSYCGVWRRW-L 149

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR--IMCRPMDLERDQSYFLFATTQQQLC 186
           L     +L  D LA G          DD  +     + R       ++   +    + L 
Sbjct: 150 LNKAAEELKVDKLALG-------LNLDDEVQMFLMNLMRGDVARLGRTGPYYEVIHEGLV 202

Query: 187 DLRFPLGDMKKESVRDLAREMGLDI 211
               PL ++ ++ +   A    +++
Sbjct: 203 PRIKPLREVPEKEIVLYAVLNNIEV 227


>gi|332043257|gb|EGI79454.1| GMP synthase, large subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 517

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           L     + +VV+ +SGGVDSSV A LL + 
Sbjct: 214 LQAKIGNDKVVLGLSGGVDSSVAAMLLHKA 243


>gi|319793529|ref|YP_004155169.1| gmp synthase, large subunit [Variovorax paradoxus EPS]
 gi|315595992|gb|ADU37058.1| GMP synthase, large subunit [Variovorax paradoxus EPS]
          Length = 538

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 54/207 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +              
Sbjct: 230 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMEMFEG---------- 279

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----S 131
                 ++      D  + F             AG   +   +  R +   + +      
Sbjct: 280 -----KLHAKVIRVDASDLFLGK---------LAG---VSDPEAKRKIIGGEFVTVFKQE 322

Query: 132 VTR-------QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
             +         GA  LA G      +  G    ++ +  +           +     +Q
Sbjct: 323 AAKLKAGDGGHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQ 374

Query: 185 LC-DLRFPLGDMKKESVRDLAREMGLD 210
           L   L  PL D+ K+ VR+L   +GL 
Sbjct: 375 LGLKLLEPLRDLFKDEVRELGVALGLP 401


>gi|307266518|ref|ZP_07548051.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918437|gb|EFN48678.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 380

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 49/197 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V A ++ + G +V  V          S    S  A   V D   V
Sbjct: 172 NGKATVLLSGGIDSPVAAWMMMKRGVEVEAVYFH-------SPPYTSERAKDKVVDLCEV 224

Query: 80  CDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SV 132
                  +  +V  + +             Y        C     T+    ++      +
Sbjct: 225 LSQYGQKIKLHVVHFTDL--------QLEIYEK------CPPRFTTIIMRRMMMKIAEKI 270

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
            ++ G+  L TG  +                         Q+      T   +    F P
Sbjct: 271 AQKNGSMALITGESLGQVAS--------------------QTIESLYVTNASVSMPIFRP 310

Query: 192 LGDMKKESVRDLAREMG 208
           L  M K  + DLA+++G
Sbjct: 311 LIGMDKTEIIDLAQKIG 327


>gi|288554931|ref|YP_003426866.1| GMP synthase [Bacillus pseudofirmus OF4]
 gi|288546091|gb|ADC49974.1| GMP synthase [Bacillus pseudofirmus OF4]
          Length = 513

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 66/198 (33%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVA L+ +     IG  L          RK           A  V
Sbjct: 218 NKKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFIDHGLLRKDE---------AEGV 264

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLSV 132
             T         + E F   VI       F S       P     +  N  + +      
Sbjct: 265 MKT---------FSEGFNMNVIKIDAQERFLSKLKGVSDPEQKRKIIGNEFI-YVFEEET 314

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++    D LA G      +  G D  +     +           +    +     L  PL
Sbjct: 315 SQLTDMDFLAQGTLYTDIIESGTDTAQT---IKSHHN-------VGGLPEDMKFTLIEPL 364

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR+L  E+G+ 
Sbjct: 365 NTLFKDEVRELGSELGIP 382


>gi|237749187|ref|ZP_04579667.1| argininosuccinate synthase [Oxalobacter formigenes OXCC13]
 gi|229380549|gb|EEO30640.1| argininosuccinate synthase [Oxalobacter formigenes OXCC13]
          Length = 407

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELDPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     ++ D  E F    + P           Y  G +    +   R      L+
Sbjct: 53  LKFGIKPENIFIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LI 106

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD +A G
Sbjct: 107 EIARETGADAIAHG 120


>gi|288574621|ref|ZP_06392978.1| GMP synthase, large subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570362|gb|EFC91919.1| GMP synthase, large subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 510

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 31/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+  +SGGVDSSV AAL+ +     IG  LQ         R        + Y+A   
Sbjct: 214 DDRVICGLSGGVDSSVAAALVSKA----IGDRLQCIFVDTGMLRDREAEEVLESYEAM-- 267

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              +NV H   D  ERF      V  P       GE  +   +              +  
Sbjct: 268 --DLNVVH--VDASERFLTALEGVTDPERKRKIIGELFVRVFEA----------ESAKIS 313

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  L  G      +  G  GK   ++    +        +    +     +  PL D+ 
Sbjct: 314 DAKWLLQGTLYPDVIESGHQGKNAAVIKSHHN--------VGGLPEDMDLKVLEPLRDLF 365

Query: 197 KESVRDLAREMGLD 210
           K+ VR + R + + 
Sbjct: 366 KDEVRAIGRILDVP 379


>gi|254482585|ref|ZP_05095824.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2148]
 gi|214037276|gb|EEB77944.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2148]
          Length = 406

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   +
Sbjct: 6   KVVLAYSGGLDTSVIVRWLQDT-YNCEVVTF-----------TADIGQGEEVEPARAKAE 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGIKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GA  ++ G
Sbjct: 108 NETGASAISHG 118


>gi|163867327|ref|YP_001608521.1| argininosuccinate synthase [Bartonella tribocorum CIP 105476]
 gi|189046381|sp|A9IL50|ASSY_BART1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|161016968|emb|CAK00526.1| Argininosuccinate synthase [Bartonella tribocorum CIP 105476]
          Length = 411

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 26/139 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +VV+A SGG+D+S++   L+         TL      +          G+++
Sbjct: 1   MKKWQNIRKVVLAYSGGLDTSIILKWLQS--------TL----DAEVVTFTADLGQGEEL 48

Query: 74  YDARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVK 125
             ARR  + + V   Y+ D  E F    + P          +Y  G +    +   R   
Sbjct: 49  ELARRKAEMLGVKEIYIEDLREEFVRDFVFPMFRANTVYEGAYLLGTSIARPLISKR--- 105

Query: 126 FSDLLSVTRQLGADVLATG 144
              L+ + ++ GAD +A G
Sbjct: 106 ---LIEIAKETGADAIAHG 121


>gi|148270642|ref|YP_001245102.1| NAD synthetase [Thermotoga petrophila RKU-1]
 gi|147736186|gb|ABQ47526.1| NH(3)-dependent NAD(+) synthetase [Thermotoga petrophila RKU-1]
          Length = 576

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VA +     G + V GV +                + + + DA+ +
Sbjct: 317 KVVIGLSGGMDSSLVAVIATEALGKENVKGVLM-----------PSMYTSKESIEDAQTL 365

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQL 136
              + +  ++    + F +   +       AG    P +        ++ + L++++ + 
Sbjct: 366 AKNLGIETFIIPITDVFHS--YLGALEDVFAGR--EPDITEENLQARIRGNYLMALSNKF 421

Query: 137 GADVLATG 144
           G  VL TG
Sbjct: 422 GWLVLTTG 429


>gi|283465263|gb|ADB23114.1| GMP synthase [Rhodopirellula baltica]
 gi|283465267|gb|ADB23116.1| GMP synthase [Rhodopirellula baltica]
 gi|283465273|gb|ADB23119.1| GMP synthase [Rhodopirellula baltica]
 gi|283465275|gb|ADB23120.1| GMP synthase [Rhodopirellula baltica]
 gi|283465277|gb|ADB23121.1| GMP synthase [Rhodopirellula baltica]
 gi|283465279|gb|ADB23122.1| GMP synthase [Rhodopirellula baltica]
 gi|283465289|gb|ADB23127.1| GMP synthase [Rhodopirellula baltica]
 gi|283465295|gb|ADB23130.1| GMP synthase [Rhodopirellula baltica WH47]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   + RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGNKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|195055254|ref|XP_001994534.1| GH17302 [Drosophila grimshawi]
 gi|193892297|gb|EDV91163.1| GH17302 [Drosophila grimshawi]
          Length = 420

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S +   L    Y+VI V                    ++   AR+   
Sbjct: 5   KVILAYSGGLDTSCILKWLLEQRYEVICV-------------LADVGQQENFEAARQKAL 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
            I      V D ++ F    I P           Y  G +   PC+          L+  
Sbjct: 52  KIGAKEVIVADIKQNFVEQYIWPAIQMGLIYEERYLLGTSLARPCISV-------ALIEA 104

Query: 133 TRQLGADVLATG 144
            R+  A  LA G
Sbjct: 105 ARRYDAKYLAHG 116


>gi|85706906|ref|ZP_01037996.1| argininosuccinate synthase [Roseovarius sp. 217]
 gi|85668517|gb|EAQ23388.1| argininosuccinate synthase [Roseovarius sp. 217]
          Length = 408

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 47/208 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELDPARQ 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
             + + +     Y+ D  E F    + P   + A  E          R +    L+ +  
Sbjct: 51  KAEMLGIKPENIYIEDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAA 110

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFP 191
             GAD +A G                           DQ  F    +A        +  P
Sbjct: 111 MTGADAVAHG---------------------ATGKGNDQVRFELAAYALNPDI--KVIAP 147

Query: 192 --LGDMK-KESVRDLAREMGLDIADKSD 216
             L D+  +  +   A E  + IA    
Sbjct: 148 WRLWDLTSRTKLIAFAEENQIPIAKNKR 175


>gi|283465271|gb|ADB23118.1| GMP synthase [Rhodopirellula baltica]
          Length = 235

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   + RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 151 IRKQVGNKRVICGLSGGVDSSVVAALL----YKAIG 182


>gi|283465259|gb|ADB23112.1| GMP synthase [Rhodopirellula sp. K249]
 gi|283465261|gb|ADB23113.1| GMP synthase [Rhodopirellula sp. K833]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|258544521|ref|ZP_05704755.1| NH(3)-dependent NAD(+) synthetase [Cardiobacterium hominis ATCC
           15826]
 gi|258520256|gb|EEV89115.1| NH(3)-dependent NAD(+) synthetase [Cardiobacterium hominis ATCC
           15826]
          Length = 248

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 35/188 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + +SGGVDS+V A L+ R G  V  + L             +  +  D+ DA  V  +  
Sbjct: 29  LGVSGGVDSAVCAHLVARTGRPVHALML-----------PAAVSSEADLQDAEAVLQSAG 77

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           ++  +      +         +         P  +    ++  +L++  R +     A  
Sbjct: 78  LTGNIISIAPLY-------DLAMQQLAPVLNPEPERLNVLR-GNLMARLRMVLLYTTAQS 129

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H                   +  D   D                  PL  ++KE V ++A
Sbjct: 130 HRAVVLGTDNAAEVHTGYFTKYGDGAAD----------------VLPLAALRKEQVYEMA 173

Query: 205 REMGLDIA 212
           R +G+  A
Sbjct: 174 RLLGVPQA 181


>gi|188589311|ref|YP_001921417.1| ExsB family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499592|gb|ACD52728.1| ExsB family protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 239

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 48/214 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   K+     +++I +TL   N          
Sbjct: 14  DFDMIQDGDKIAVGLSGGKDSLTLLHLLNTYKKFSPQKFELIAITL---NPGGVDNSPLY 70

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                       +C+ + V  Y    +   +  V           +   PC  C   ++ 
Sbjct: 71  T-----------LCENLEVPFYEI--QTDIKKIVFD-------LRKEKNPCSLC-ANLRR 109

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L      LG + +A GH+        DD     ++    +        +   + + L 
Sbjct: 110 GALHHSAENLGCNKVALGHH-------KDDALETLMLSMSYEGR------INCFSPKTLM 156

Query: 187 D-----LRFPLGDMKKESVRDLAREMGLDIADKS 215
                 L  P+  +++ ++R + ++  L +    
Sbjct: 157 HKNTITLIRPMVYIEEHNIRSVVKKYNLPVIKNP 190


>gi|149204363|ref|ZP_01881330.1| argininosuccinate synthase [Roseovarius sp. TM1035]
 gi|149142248|gb|EDM30295.1| argininosuccinate synthase [Roseovarius sp. TM1035]
          Length = 408

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 47/208 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELDPARQ 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
             + + +     Y+ D  E F    + P   + A  E          R +    L+ +  
Sbjct: 51  KAEILGIKPENIYIEDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAA 110

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFP 191
             GAD +A G                           DQ  F    +A        +  P
Sbjct: 111 MTGADAVAHG---------------------ATGKGNDQVRFELAAYALNPDI--KVIAP 147

Query: 192 --LGDMK-KESVRDLAREMGLDIADKSD 216
             L D+  +  +   A E  + IA    
Sbjct: 148 WRLWDLTSRTKLIAFAEENQIPIAKNKR 175


>gi|149193858|ref|ZP_01870956.1| argininosuccinate synthase [Caminibacter mediatlanticus TB-2]
 gi|149135811|gb|EDM24289.1| argininosuccinate synthase [Caminibacter mediatlanticus TB-2]
          Length = 400

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VV+A SGG+D+SV+   L+   Y+   VT                  G++V +AR   
Sbjct: 1   MKVVLAYSGGLDTSVILKWLQDK-YNAEVVTF-----------TADIGQGEEVEEAREKA 48

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + V     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 49  LKLGVKPENIFIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQI------ 102

Query: 131 SVTRQLGADVLATG 144
            + +Q+GA+ +A G
Sbjct: 103 EIAKQVGAEAVAHG 116


>gi|20093584|ref|NP_613431.1| ATPase [Methanopyrus kandleri AV19]
 gi|19886440|gb|AAM01361.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 263

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 87/252 (34%), Gaps = 39/252 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           R++VAMSGG DS  VA  LKR     G++V G          A    G   +  DV + +
Sbjct: 46  RILVAMSGGKDSFAVAFGLKRLRGGYGWEVEGAH-------VAPTVDGKKISAWDVVEEQ 98

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                + +  Y+        + V+               C  C RT++  +L  +  + G
Sbjct: 99  --AKILEIHAYLL----EPESDVLE--LKEEMNAR--KVCYAC-RTLRRIELGQLAEEKG 147

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +A GH +               +    +  +   Y            L  PL    +
Sbjct: 148 FDYIALGHTL-----DDAAATVILSLLTGAERLKLLWYTGTWRGG---PRLIRPLVRCPE 199

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
              + LA E+ +D     D   +C    G   D V+     +  E  I H+ G ++G   
Sbjct: 200 AVTKALAEELKVDTVMTED---VCPYAGG-LRDEVEEFLDRLERE-WIPHVKGNVVGT-- 252

Query: 258 GIINYTIGQRRG 269
                T+  R+ 
Sbjct: 253 --ALRTLRGRQC 262


>gi|325130238|gb|EGC53008.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis OX99.30304]
          Length = 426

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KICVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|325263183|ref|ZP_08129918.1| GMP synthase [Clostridium sp. D5]
 gi|324031576|gb|EGB92856.1| GMP synthase [Clostridium sp. D5]
          Length = 515

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 26/191 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSV A +L    G  +  V     +     K +G         +     
Sbjct: 218 KVLCALSGGVDSSVAAVMLSEAIGSQLTCVF---VDHGLLRKDEGDEVEAVFGPEG---- 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-D 139
              +++    + +ERF + +                 +     ++        +++GA D
Sbjct: 271 -HYDLNFIRVNAQERFYSKLAGAVEPEEKRK------IIGEEFIRV--FEEEAQKIGAVD 321

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G      +  G  G+          + +               ++  PL D+ K+ 
Sbjct: 322 FLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPLRDLFKDE 373

Query: 200 VRDLAREMGLD 210
           VR    E+G+ 
Sbjct: 374 VRKAGLELGIP 384


>gi|312128888|ref|YP_003996228.1| asparagine synthase [Leadbetterella byssophila DSM 17132]
 gi|311905434|gb|ADQ15875.1| asparagine synthase [Leadbetterella byssophila DSM 17132]
          Length = 590

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG+DSSVV  LL+     V+                    + +D+  AR V D +++ 
Sbjct: 200 LSGGLDSSVVTTLLR----HVV------SEDISCYYYDSGDTSHRDLDYARLVADNLDLP 249

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
            +V +        +       +    T  P V    +    +L    R+ G   + TG
Sbjct: 250 LHVVNTSGE---NIFTH--QRWLCERTGFPEVFILPSTTHIELSEELREKGISRMFTG 302


>gi|283465265|gb|ADB23115.1| GMP synthase [Rhodopirellula baltica]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   + RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGNKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|261404771|ref|YP_003241012.1| GMP synthase large subunit [Paenibacillus sp. Y412MC10]
 gi|261281234|gb|ACX63205.1| GMP synthase, large subunit [Paenibacillus sp. Y412MC10]
          Length = 512

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 67/206 (32%), Gaps = 56/206 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVA L+ +     IG  L          RKG          A  V
Sbjct: 217 EKKVLCALSGGVDSSVVAMLIHKA----IGDQLTCMFIDHGLLRKGE---------AESV 263

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-------- 124
            +T         +  +F   V+       F S     + P     +  N  +        
Sbjct: 264 MET---------FVGKFDMKVVKIDAQERFMSKLKGVDDPEKKRKIIGNEFIYVFDEESS 314

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF D            LA G      +  G D        +           +    +  
Sbjct: 315 KFDDFA---------FLAQGTLYTDIVESGTDT---AHTIKSHHN-------VGGLPEDM 355

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL  + K+ VR +  E+GL 
Sbjct: 356 KFELIEPLKALFKDEVRKVGEELGLP 381


>gi|157813154|gb|ABV81322.1| putative GMP synthetase [Tanystylum orbiculare]
          Length = 197

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 15/80 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLK---RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V+V +SGGVDS+V AALL         VI V +     RK   ++              
Sbjct: 45  KVLVLVSGGVDSTVCAALLHKALEQN-QVIAVHIDNGFMRKQESKQVEESL--------- 94

Query: 79  VCDTINVSHYVFDYEERFRN 98
               + +   V +    F N
Sbjct: 95  --RKLGLQLTVINAAHLFYN 112


>gi|160903300|ref|YP_001568881.1| NAD+ synthetase [Petrotoga mobilis SJ95]
 gi|160360944|gb|ABX32558.1| NAD+ synthetase [Petrotoga mobilis SJ95]
          Length = 575

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DSS+ AA+     G + V+G+ +                +   + D+  
Sbjct: 316 QKVVLGLSGGIDSSLTAAIAADAIGPENVVGLLM-----------PSQYSSKGSIDDSIE 364

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +++ +    + +    I     S+   +      +    ++ + +++ + + G 
Sbjct: 365 LSKNLGINYKIIPINDIY-EKYIENLKESFKNTDEDKTEENIQARIRGNLVMAFSNKFGY 423

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
             LA G+   +             M       +D
Sbjct: 424 LALACGNKSEAATGYA---TLYGDMAGGFSPIKD 454


>gi|18978317|ref|NP_579674.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus
          furiosus DSM 3638]
 gi|18894145|gb|AAL82069.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
          3638]
          Length = 204

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 21 MRVV-VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          M+VV    SGG DSS+ A +LK+ GY+V  +T+                   +   AR  
Sbjct: 7  MKVVYHLFSGGKDSSLAAWILKKLGYEVKLITITF-------------GVLDNWKFARET 53

Query: 80 CDTINVSHYVFDY 92
           + +   H V + 
Sbjct: 54 AEILGFDHEVIEM 66


>gi|302871600|ref|YP_003840236.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574459|gb|ADL42250.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 268

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 43/210 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LLK   +DV+G      +   A          ++  DA ++   
Sbjct: 24  VLVAFSGGVDST---FLLKVS-FDVLG------DKVIAVFSSSVLSPQREKEDAEKIAKD 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I     V +  + F N     F          L C  C       DL+   + L  ++  
Sbjct: 74  IGAKLIVIE-RDVFSN---GDFMK-----NDRLRCYYCK-----KDLVKRLKVLKEEL-- 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                   L    +G     +       +       A  ++ +    F  G + KE +R 
Sbjct: 118 -------NLNEIVEGSNIDDLQDFRPGRK-------ALEEEGIKSPLFEAG-LTKEEIRY 162

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           L++E GL    K  S   C V +  Y D +
Sbjct: 163 LSKEFGLSTYQKHSS--ACLVTRIPYGDEI 190


>gi|302345658|ref|YP_003814011.1| GMP synthase (glutamine-hydrolyzing) [Prevotella melaninogenica
           ATCC 25845]
 gi|302149063|gb|ADK95325.1| GMP synthase (glutamine-hydrolyzing) [Prevotella melaninogenica
           ATCC 25845]
          Length = 514

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 47/201 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL +  G ++  +     +     K + +      V DA +
Sbjct: 213 NDRVILGLSGGVDSSVCAVLLNKAIGKNLTCIF---VDHGMLRKNEFT-----KVMDAYK 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
               + ++    D  E+F              G T     +  R +   D + V     +
Sbjct: 265 ---GLGLNVIGVDASEQFFKD---------LEGVT---DPEQKRKIIGRDFVEVFNAEAK 309

Query: 135 QL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ++  A  LA        I S    G   K                  +    ++    L 
Sbjct: 310 KITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPEEMHLQLC 355

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR +  E+G+ 
Sbjct: 356 EPLRWLFKDEVRRVGYELGMP 376


>gi|62258565|gb|AAX77805.1| unknown protein [synthetic construct]
          Length = 284

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 59  VIGLSGGIDSAVAASLAVKTGLPTTALIL-----------PSDNNQHQDMQDALELIEML 107

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +    S           +  N    ++   L +  +Q      
Sbjct: 108 NIEHYTISIQPAY-EAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY----- 161

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 162 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 201

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 202 ELGKYLDVP 210


>gi|56708321|ref|YP_170217.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256074|ref|YP_513436.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670792|ref|YP_667349.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314550|ref|YP_763273.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
           subsp. holarctica OSU18]
 gi|167009801|ref|ZP_02274732.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
           subsp. holarctica FSC200]
 gi|187931797|ref|YP_001891782.1| NAD+ synthetase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224457441|ref|ZP_03665914.1| NAD+ synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254367407|ref|ZP_04983433.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369082|ref|ZP_04985094.1| hypothetical protein FTAG_00010 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254370804|ref|ZP_04986809.1| NAD synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875141|ref|ZP_05247851.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|224510802|pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|224510803|pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|224510804|pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|224510805|pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
 gi|56604813|emb|CAG45892.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143905|emb|CAJ79124.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321125|emb|CAL09275.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129449|gb|ABI82636.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253223|gb|EBA52317.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           holarctica 257]
 gi|151569047|gb|EDN34701.1| NAD synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|157122032|gb|EDO66172.1| hypothetical protein FTAG_00010 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712706|gb|ACD31003.1| NAD+ synthetase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254841140|gb|EET19576.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159552|gb|ADA78943.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 249

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 33  VIGLSGGIDSAVAASLAVKTGLPTTALIL-----------PSDNNQHQDMQDALELIEML 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +    S           +  N    ++   L +  +Q      
Sbjct: 82  NIEHYTISIQPAY-EAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY----- 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 136 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 176 ELGKYLDVP 184


>gi|302039012|ref|YP_003799334.1| hypothetical protein NIDE3731 [Candidatus Nitrospira defluvii]
 gi|300607076|emb|CBK43409.1| conserved protein of unknown function, PP-loop superfamily
           [Candidatus Nitrospira defluvii]
          Length = 273

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 66/198 (33%), Gaps = 51/198 (25%)

Query: 23  VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-RRVC 80
           V+VA SGG+DSS+V  L     G   +GVT              S        DA + + 
Sbjct: 24  VIVAFSGGIDSSLVLKLAHDELGEQAVGVT------------AVSPTLPAAELDATQTIA 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139
             I   H + + ++      +   A+     +T    +          LL   R +  A 
Sbjct: 72  AEIGARHRIVETDQLDIPEFVRNDATRCYHCKT---DLYS--------LLETLRTEYAAG 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
            +  G        + D G  R  +    +                   +R PL      K
Sbjct: 121 YIVDG------TNMDDLGDDRPGLKAARERG-----------------VRSPLLEAGFSK 157

Query: 198 ESVRDLAREMGLDIADKS 215
             +RD+ARE+GL   DK 
Sbjct: 158 ADIRDVARELGLSNWDKP 175


>gi|299141020|ref|ZP_07034158.1| GMP synthase [Prevotella oris C735]
 gi|298577986|gb|EFI49854.1| GMP synthase [Prevotella oris C735]
          Length = 514

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           DL K   + RV++ +SGGVDSSV A LL +  G ++  +     +     K + +     
Sbjct: 206 DLKKQLGNDRVILGLSGGVDSSVCATLLNKAIGNNLTCIF---VDHGMLRKNEFTKVMEA 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                      + ++    D  E+F              G T     +  R +   D + 
Sbjct: 263 Y--------QGLGLNVVGVDASEKFFKD---------LDGVT---DPEQKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  E+G+ 
Sbjct: 349 EMKLKLCEPLQWLFKDEVRRVGYELGMP 376


>gi|282858096|ref|ZP_06267291.1| PP-loop domain protein [Pyramidobacter piscolens W5455]
 gi|282584018|gb|EFB89391.1| PP-loop domain protein [Pyramidobacter piscolens W5455]
          Length = 275

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 23/136 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVYDARR 78
           R+ V +SGG DS ++  +LK          ++ Y+       +          D    + 
Sbjct: 38  RIAVGVSGGKDSLLLLHILK---------FIKTYSPVKYDLQAFSVDMTNGAWDPAPLQN 88

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD + V  +V  Y       V               PC  C   ++   L +  ++ G 
Sbjct: 89  LCDALEVPLHVIPYAIEHILDVK----------REESPCSLC-ANLRRGILNAAAQKAGC 137

Query: 139 DVLATGHYIRSRLYVG 154
           + LA GH +   +  G
Sbjct: 138 NKLALGHNLDDVVETG 153


>gi|281424232|ref|ZP_06255145.1| GMP synthase [Prevotella oris F0302]
 gi|281401501|gb|EFB32332.1| GMP synthase [Prevotella oris F0302]
          Length = 514

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           DL K   + RV++ +SGGVDSSV A LL +  G ++  +     +     K + +     
Sbjct: 206 DLKKQLGNDRVILGLSGGVDSSVCATLLNKAIGNNLTCIF---VDHGMLRKNEFTKVMEA 262

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                      + ++    D  E+F              G T     +  R +   D + 
Sbjct: 263 Y--------QGLGLNVVGVDASEKFFKD---------LDGVT---DPEQKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  E+G+ 
Sbjct: 349 EMKLKLCEPLQWLFKDEVRRVGYELGMP 376


>gi|229544085|ref|ZP_04433144.1| argininosuccinate synthase [Bacillus coagulans 36D1]
 gi|229325224|gb|EEN90900.1| argininosuccinate synthase [Bacillus coagulans 36D1]
          Length = 404

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    ++   GYDVI +                   G+D+   R+  
Sbjct: 5   KIVLAYSGGLDTSVSIKWIQEKYGYDVIAL-------------GIDVGEGKDLNAIRQKA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  +   + D +E      I+P   + A  E   P     +R +    L+ V  Q GA
Sbjct: 52  LNVGAIKAVIIDGKEMLAKDYILPALKANALYEGKYPLSSAISRPLISKLLVDVAEQEGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 VAVAHG 117


>gi|154249452|ref|YP_001410277.1| NAD+ synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153388|gb|ABS60620.1| NAD+ synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 583

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A  L + D  +     + V+ +SGG+DS++VA +     G + V+GV++        
Sbjct: 302 VYNALVLATRDYIRKNGMKKAVIGLSGGMDSTLVACIAVDALGAENVVGVSM-------- 353

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96
               G   +     DA+ + + + +        E +
Sbjct: 354 ---PGPFSSEHSKEDAKILAENLGIKFLTIPIMEAY 386


>gi|313892419|ref|ZP_07826010.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313119180|gb|EFR42381.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 512

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 44/207 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGS 66
           ++ +     +V+ A+SGGVDSSV A L+ R  G  +  V      ++L  +++  +    
Sbjct: 209 EIREKVGKNKVICALSGGVDSSVAAVLVHRAIGEQLTCVFVDHGFMRLGEAKQVVETFK- 267

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                         +  N+     D  + F              G T  P  +  R +  
Sbjct: 268 --------------NKFNMKLVHIDASKHFM---------ELLEGVT-EP--EKKRKIIG 301

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           ++ ++   Q  AD +    ++       D    G       +           +    + 
Sbjct: 302 AEFINT-FQREADKIKDVKFLVQGTLYPDVVESGTATAATIKSHHN-------VGGLPKD 353

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR+L R++G+ 
Sbjct: 354 MKFKLIEPLRELFKDEVRELGRQLGMP 380


>gi|307703820|ref|ZP_07640761.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus oralis ATCC
           35037]
 gi|307622655|gb|EFO01651.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus oralis ATCC
           35037]
          Length = 513

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 201 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 255

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 256 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 309

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 310 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 353

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 354 EDMQFELIEPLNTLYKDEVRALGTELGMP 382


>gi|307353508|ref|YP_003894559.1| NAD+ synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156741|gb|ADN36121.1| NAD+ synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 550

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+V++SGG+DS+VV  L     G + V+  T+            G   +   V D++ +
Sbjct: 293 KVIVSLSGGIDSAVVCCLAVEALGPESVVAATM-----------PGPYSSAGSVGDSKAL 341

Query: 80  CDTINVSHYVFDYEERF 96
            + + +        + +
Sbjct: 342 AENLGIRLLEIPVTKIY 358


>gi|300709572|ref|YP_003735386.1| argininosuccinate synthase [Halalkalicoccus jeotgali B3]
 gi|299123255|gb|ADJ13594.1| argininosuccinate synthase [Halalkalicoccus jeotgali B3]
          Length = 411

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +A SGG+D++V   LL+ + GYD VIGVT+ +    +  +                 
Sbjct: 3   RVALAFSGGLDTTVCVPLLEEEYGYDEVIGVTVDVGQPEEEFEEAEETAEA--------- 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + +++ D +  F         ++      PL      R V    +L V  +    
Sbjct: 54  ---LGLENHIVDAKSEFAETCFDGVKANATYQGYPLGTALA-RPVIAQAILEVAEEQDCS 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMD 168
            LA G         G+D  R   + R  D
Sbjct: 110 ALAHG-----CTGKGNDQLRFEAVWRGSD 133


>gi|283465224|gb|ADB23096.1| GMP synthase [Rhodopirellula sp. 3SC]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|199594478|gb|ACH90703.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas
           acidaminiphila]
          Length = 184

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++     ++G           + + +
Sbjct: 38  VILGLSGGVDSSVVAALLHKAIGPQLTCVF---VDTGLLRFQEGDQVM-------KMMAE 87

Query: 82  TINVSHYVFDYEERFRNA 99
            + V     +  +R+  A
Sbjct: 88  NMGVKVVRVNAADRYFKA 105


>gi|78066768|ref|YP_369537.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia sp. 383]
 gi|91206798|sp|Q39F73|GUAA_BURS3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77967513|gb|ABB08893.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia sp. 383]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AQKLSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|329121915|ref|ZP_08250529.1| GMP synthase [Dialister micraerophilus DSM 19965]
 gi|327467712|gb|EGF13208.1| GMP synthase [Dialister micraerophilus DSM 19965]
          Length = 512

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 44/207 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGV-----TLQLYNSRKASKRKGS 66
           ++ +     +V+ A+SGGVDSSV A L+ R  G  +  V      ++L  +++  +    
Sbjct: 209 EIREKVGKNKVICALSGGVDSSVAAVLVHRAIGEQLTCVFVDHGFMRLGEAKQVVETFK- 267

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                         +  N+     D  + F              G T  P  +  R +  
Sbjct: 268 --------------NKFNMKLVHIDASKHFM---------ELLEGVT-EP--EKKRKIIG 301

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           ++ ++   Q  AD +    ++       D    G       +           +    + 
Sbjct: 302 AEFINT-FQREADKIKDVKFLVQGTLYPDVVESGTATAATIKSHHN-------VGGLPKD 353

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ VR+L R++G+ 
Sbjct: 354 MKFKLIEPLRELFKDEVRELGRQLGMP 380


>gi|257064368|ref|YP_003144040.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792021|gb|ACV22691.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 327

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 34/193 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVVAALL +  G  ++ V +  +   +  + +      Q+  DA  
Sbjct: 38  DGKVLLALSGGVDSSVVAALLIKAIGKQLVCVHV-NHGLMRKGESEQVIEVFQNQMDA-- 94

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQLG 137
                  +    D  +RF + +                 +     +K F +     +  G
Sbjct: 95  -------NLIYVDATDRFLDLLAGQADPETKRH------IIGEEFIKVFDE--EAAKLDG 139

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G      L      K                  +    ++   +L  P+  + K
Sbjct: 140 IGFLGQGTIYPDILESEAGVKAHHN--------------VGGLPEELNWELVEPVKLLFK 185

Query: 198 ESVRDLAREMGLD 210
           + VR + +++GL 
Sbjct: 186 DEVRVVGKQLGLP 198


>gi|227494865|ref|ZP_03925181.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831317|gb|EEH63700.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 523

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 64/208 (30%), Gaps = 55/208 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+ A+SGGVDSSV AAL+ +  G  +  +     +       +                
Sbjct: 220 HVICALSGGVDSSVAAALVHKAVGDQLTCIF---VDHGLLRAGEREQVEEDY-------A 269

Query: 81  DTINVSHYVFDYEERF------------RNAVIVP-FASSYAAG--ETPLPCVDCNRTVK 125
             + +     D  ERF            +  +I   F  S+ A               +K
Sbjct: 270 KGMGIRVITVDESERFLTALAGVSEPEEKRKIIGREFIRSFEAAQRRVIEEVGATGAEIK 329

Query: 126 F---SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           F     L         DV+ +G    +                P DL+ D          
Sbjct: 330 FLVQGTLY-------PDVVESGGGEGAANIKSHHNVGGL----PEDLKFD---------- 368

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL  + K+ VR + RE+G+ 
Sbjct: 369 -----LVEPLRTLFKDEVRAIGRELGVP 391


>gi|15613170|ref|NP_241473.1| GMP synthase [Bacillus halodurans C-125]
 gi|13627137|sp|Q9KF78|GUAA_BACHD RecName: Full=Putative GMP synthase [glutamine-hydrolyzing];
           AltName: Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|10173221|dbj|BAB04326.1| GMP synthetase [Bacillus halodurans C-125]
          Length = 513

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 71/210 (33%), Gaps = 45/210 (21%)

Query: 12  LDLDKNPK---DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L+++K  +   D +V+ A+SGGVDSSVVA L+ +     IG  L          RKG   
Sbjct: 207 LEMEKIREQVGDKQVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFIDHGLLRKGE-- 260

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCN 121
                  A  V  T         + E F   VI       F S       P     +  N
Sbjct: 261 -------ADSVMKT---------FSEGFNMNVIKIDAKDRFLSKLEGVSDPEQKRKIIGN 304

Query: 122 RTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
             +          +L   D LA G        + + G       +           +   
Sbjct: 305 EFIYV--FEEEASKLKDMDFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGL 352

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 353 PEDMRFELIEPLNTLFKDEVRKLGTELGIP 382


>gi|302391516|ref|YP_003827336.1| tRNA methyl transferase [Acetohalobium arabaticum DSM 5501]
 gi|302203593|gb|ADL12271.1| tRNA methyl transferase [Acetohalobium arabaticum DSM 5501]
          Length = 36

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/21 (76%), Positives = 19/21 (90%)

Query: 20 DMRVVVAMSGGVDSSVVAALL 40
          D +V+VAMSGGVDSS+ AALL
Sbjct: 3  DKKVMVAMSGGVDSSLTAALL 23


>gi|240849703|ref|YP_002971091.1| argininosuccinate synthase [Bartonella grahamii as4aup]
 gi|240266826|gb|ACS50414.1| argininosuccinate synthase [Bartonella grahamii as4aup]
          Length = 415

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MKKWQNIRKVVLAYSGGLDTSIILKWLQSTLGVEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +  ARR  + + V   Y+ D  E F R+ V   F ++     T L      R +    L+
Sbjct: 48  LEFARRKAEMLGVKEIYIEDLREEFVRDFVFPMFRANTVYEGTYLLGTSIARPLISKRLI 107

Query: 131 SVTRQLGADVLATG 144
            + ++  AD +A G
Sbjct: 108 EIAKETEADAIAHG 121


>gi|317500678|ref|ZP_07958896.1| GMP synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897872|gb|EFV19925.1| GMP synthase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 545

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+ A+SGGVDSSV A +L +  G  +  V      L+  +     +         D+
Sbjct: 246 DGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVFVDHGLLR-KDEGDEVEAVFGPEGPYDL 304

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                            + +ERF   +                 +     ++        
Sbjct: 305 N------------FIRVNAQERFYAKLKG--VEEPEEKRK----IIGEEFIRV--FEEEA 344

Query: 134 RQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++GA D L  G      +  G  G+          + +               ++  PL
Sbjct: 345 KKIGAVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPL 396

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR    E+G+ 
Sbjct: 397 RDLFKDEVRKAGLELGIP 414


>gi|199594450|gb|ACH90689.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +  +R+  A
Sbjct: 86  -AEHMGVKVVRVNAADRYFKA 105


>gi|330829938|ref|YP_004392890.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Aeromonas veronii B565]
 gi|328805074|gb|AEB50273.1| Bifunctional GMP synthase/glutamine amidotransferase protein
           [Aeromonas veronii B565]
          Length = 529

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 43/201 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++A+SGGVDSSVVA L++R  G  +  V      L+L    +  +  G        
Sbjct: 231 DDEVILALSGGVDSSVVAMLVQRAIGDRLTCVFVDNGLLRLNEGEQVMEMFG-------- 282

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  D   ++    + EERF +A   V  P A     G   +               
Sbjct: 283 -------DHFGLNIIKVEAEERFLSALAGVDEPEAKRKIIGRVFVEV-----------FD 324

Query: 131 SVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
              ++L  A  LA G      +        +  + +           +    ++    L 
Sbjct: 325 DEAKKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPEEMKMGLV 377

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K+ VR +  E+GL 
Sbjct: 378 EPLRELFKDEVRRVGLELGLP 398


>gi|302380335|ref|ZP_07268805.1| NAD+ synthase [Finegoldia magna ACS-171-V-Col3]
 gi|302311825|gb|EFK93836.1| NAD+ synthase [Finegoldia magna ACS-171-V-Col3]
          Length = 241

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 43/186 (23%)

Query: 26  AMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
            +SGG+DS+V+A L K+  G + +G+ +                  +D  DAR +  +I 
Sbjct: 29  GISGGIDSAVLACLCKKAFGDNALGLIM------------PIKSNPKDEEDARILAKSIG 76

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +     D  E + +A+I  F       +  +     N   +              ++   
Sbjct: 77  LRFTKVDLNESY-DALIGTF------EKNSVEMAASNIKPRLR------------MITLY 117

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           +Y ++  Y+   G  R         +   S                PL ++ K  + ++A
Sbjct: 118 YYAQNNGYMVLSGSNRSEFMTGYFTKYGDSGAD-----------LMPLLNLYKTDIFEMA 166

Query: 205 REMGLD 210
           + +G+ 
Sbjct: 167 KVLGIP 172


>gi|210630940|ref|ZP_03296685.1| hypothetical protein COLSTE_00570 [Collinsella stercoris DSM 13279]
 gi|210160255|gb|EEA91226.1| hypothetical protein COLSTE_00570 [Collinsella stercoris DSM 13279]
          Length = 327

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 70/207 (33%), Gaps = 47/207 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + ++A+SGGVDSSVVAALL +  G  +I V          +         + V D  R
Sbjct: 36  DKKALLALSGGVDSSVVAALLIKAIGKQLICVH--------VNHGLMRKGESEQVVDVFR 87

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
             + ++ +    D  +RF    + V  P               +  R +           
Sbjct: 88  --NQLDANLVYVDATDRFLSLLDGVAEP---------------EAKRKIIGAEFIRVFEE 130

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R++G             +     G     +    D  +            Q   L  P
Sbjct: 131 EARKVG-----------DEVSFLAQGTIYPDILES-DGVKAHHNVGGLPDDLQFE-LCEP 177

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQ 218
           +  + K+ VR + RE+GL   +  + Q
Sbjct: 178 VRLLYKDEVRVVGRELGLP-ENMVERQ 203


>gi|303235866|ref|ZP_07322469.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella disiens FB035-09AN]
 gi|302483739|gb|EFL46731.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella disiens FB035-09AN]
          Length = 513

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL R  G ++  +     +     K +       
Sbjct: 205 ELKEQLGNDRVILGLSGGVDSSVCATLLNRAIGKNLTCIF---VDHGMLRKNE------- 254

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    + + ++    D  E+F             AG T     +  R +   D + 
Sbjct: 255 -FAKVMEAYEGLGLNVIGVDASEKFFAD---------LAGVT---DPEQKRKIIGRDFVE 301

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 302 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 347

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  E+G+ 
Sbjct: 348 EMNLKLCEPLQWLFKDEVRRVGYELGMP 375


>gi|289547809|ref|YP_003472797.1| PP-loop domain protein [Thermocrinis albus DSM 14484]
 gi|289181426|gb|ADC88670.1| PP-loop domain protein [Thermocrinis albus DSM 14484]
          Length = 311

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  RV+VA+SGG DS +     L R GY+  G+ + L     ++K K  C         +
Sbjct: 47  KRDRVLVAVSGGKDS-LSLWQVLHRLGYEADGLYIDLGIGDYSAKSKELC---------K 96

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  + I    ++ D  +                 ++   C  C   +K   +    ++LG
Sbjct: 97  KFSERIGRKLHIVDLSQELS------TIPQIKQLDSRPACSFCGS-IKRYYMNLYAKKLG 149

Query: 138 ADVLATGHYI 147
             V+ATGH +
Sbjct: 150 YTVVATGHNL 159


>gi|283465227|gb|ADB23097.1| GMP synthase [Rhodopirellula sp. 4SC]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|206890087|ref|YP_002249585.1| hypothetical protein THEYE_A1794 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742025|gb|ACI21082.1| conserved protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 320

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 103/302 (34%), Gaps = 70/302 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +   SGG+DS +   ++K    DVI +        K      S     D   A+    
Sbjct: 3   KALALYSGGLDSLLSVLIVKEQKVDVIAL--------KFLTGFVSPLKEDDFNYAK---- 50

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----G 137
             +      D  E+F   +  P    +  G+   PC+DC        +L   ++L     
Sbjct: 51  QFDFEIREIDISEKFIEILKKP---KHGYGKNLNPCIDCKI-----LMLKEAKELMSAYK 102

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL----- 192
           A  + TG  I  R         ++ +   ++  ++ S  L     + L    FP      
Sbjct: 103 ASFIITGEVISQRPMSQ-----KKELLTVIE--KESS--LQGMILRPLSAKLFPPTKSEI 153

Query: 193 -------------GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
                        G  +K  +  LA++ G++   +      C +    +   VK + A  
Sbjct: 154 EGVINRNLLYDISGRTRKPQI-ALAKKYGIEKVPQP--AGGCLLTDPSFCKKVKDLMAHN 210

Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299
            L    V L    +GRH     + I ++            +V  D+  +++I+   + L 
Sbjct: 211 ELTLKNVEL--LKVGRH-----FRISEKCKA---------IVGRDEKENKLILSKYKGLF 254

Query: 300 VH 301
           ++
Sbjct: 255 LY 256


>gi|326390537|ref|ZP_08212093.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993362|gb|EGD51798.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 380

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 49/197 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V A ++ + G +V  V          S    S  A   V D   V
Sbjct: 172 NGKATVLLSGGIDSPVAAWMMMKRGVEVEAVYFH-------SPPYTSERAKDKVVDLCEV 224

Query: 80  CDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SV 132
                  +  +V  + +             Y        C     T+    ++      +
Sbjct: 225 LSQYGQKIKLHVVHFTDL--------QLEIYEK------CPPRFTTIIMRRMMMKIAEKI 270

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
            ++ G+  L TG  +                         Q+      T   +    F P
Sbjct: 271 AQKNGSMALITGESLGQVAS--------------------QTIESLYVTNASVSMPIFRP 310

Query: 192 LGDMKKESVRDLAREMG 208
           L  M K  + DLA+++G
Sbjct: 311 LIGMDKTEIIDLAQKIG 327


>gi|255693367|ref|ZP_05417042.1| GMP synthase [Bacteroides finegoldii DSM 17565]
 gi|260620844|gb|EEX43715.1| GMP synthase [Bacteroides finegoldii DSM 17565]
          Length = 507

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 29/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +VV+ +SGGVDSSV A LL +  G ++  +     +     K +              
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF---VDHGMLRKNEFKNVMKDY------ 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + ++    D  E+F +           AG T  P  +  R +     + V   + A
Sbjct: 264 --ECLGLNVIGVDASEKFFSE---------LAGVT-EP--EGKRKIIGKGFIDV-FDVEA 308

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +    ++       D  +   I    +    +    +    ++    L  PL  + K+
Sbjct: 309 HKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEPLRLLFKD 364

Query: 199 SVRDLAREMGLD 210
            VR + RE+G+ 
Sbjct: 365 EVRRVGRELGMP 376


>gi|291528152|emb|CBK93738.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale M104/1]
          Length = 377

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 36/146 (24%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVTLQLYNSRKASK 62
           +N+ +L K     ++ V +SGG DS ++A L +   +      DV  + +          
Sbjct: 128 INTYELVKP--GDKIAVCISGGKDSMLMAKLFQELKHHNKFDFDVKFLVM-----DPGYN 180

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDC 120
                   ++       C  + +          F + +                 PC  C
Sbjct: 181 EANRHVIEEN-------CRNLGIP------ATIFESDIFDAVYDIEK-------SPCYLC 220

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHY 146
              ++   L +  ++LG + +A GH+
Sbjct: 221 -ARMRRGHLYAFAKELGCNKIALGHH 245


>gi|283465257|gb|ADB23111.1| GMP synthase [Rhodopirellula sp. K1070]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|317014429|gb|ADU81865.1| GMP synthase [Helicobacter pylori Gambia94/24]
          Length = 508

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEQIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 EKVQAMFKDLQIPLNTIDAKEVFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+  R L +E+G
Sbjct: 358 PLRELFKDEARLLGKELG 375


>gi|261419197|ref|YP_003252879.1| exsB protein [Geobacillus sp. Y412MC61]
 gi|261375654|gb|ACX78397.1| exsB protein [Geobacillus sp. Y412MC61]
          Length = 224

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 26/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K  ++  VVV  SGG DS+      K    +V  VT   ++  +  +R+        +
Sbjct: 1   MMKMNEEKAVVV-FSGGQDSTTCLFWAKEQFGEVEAVT---FDYGQRHRRE--------I 48

Query: 74  YDARRVCDTINVSHYVFDYEERFR---NAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDL 129
             A+ + D + V H V D     +   NA+     +     GE P   VD    +  S  
Sbjct: 49  DVAQAIADELGVRHTVLDLSLLGQLAPNALTRRDIAIEQKEGELPTTFVDGRNLLFLSFA 108

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +Q GA  + TG           D       CR + ++        A   + +    
Sbjct: 109 AVFAKQRGARHIVTG-------VCETDFSGYPD-CRDVFIKSLNVTLNLAMDYEFVIHT- 159

Query: 190 FPLGDMKKESVRDLAREMG 208
            PL  + K     LA E+G
Sbjct: 160 -PLMWLTKAETWKLADELG 177


>gi|163755924|ref|ZP_02163041.1| GMP synthetase (glutamine-hydrolyzing) [Kordia algicida OT-1]
 gi|161324095|gb|EDP95427.1| GMP synthetase (glutamine-hydrolyzing) [Kordia algicida OT-1]
          Length = 511

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +VV+ +SGGVDSSV A LL + 
Sbjct: 214 NDKVVLGLSGGVDSSVAAMLLHKA 237


>gi|297618568|ref|YP_003706673.1| GMP synthase, large subunit [Methanococcus voltae A3]
 gi|297618628|ref|YP_003706733.1| GMP synthase, large subunit [Methanococcus voltae A3]
 gi|297377545|gb|ADI35700.1| GMP synthase, large subunit [Methanococcus voltae A3]
 gi|297377605|gb|ADI35760.1| GMP synthase, large subunit [Methanococcus voltae A3]
          Length = 310

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 42/203 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++       + ++A+SGGVDSSV + L+ +  G +++ V            RK      +
Sbjct: 14  EIKTAINGRKTIIALSGGVDSSVASVLVSKAVGENLLAVF-----VDTGLMRKNETEEIK 68

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL- 130
            ++      + + V+  V   ++ F             AG T     +  R +     + 
Sbjct: 69  KIFQ-----EEMGVNLKVVYAKDMFLKE---------LAGIT---DPEEKRKIIGRLFIE 111

Query: 131 ---SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               V ++ G +VL  G      +    + K    +  P  +  D               
Sbjct: 112 IFEDVAKENGEEVLIQGTIAPDWIESEGEIKTHHNIALPSGMVLD--------------- 156

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  P+ ++ K+ VR +A E+GL 
Sbjct: 157 VVEPIRELYKDEVRQVAVELGLP 179


>gi|153003186|ref|YP_001377511.1| NAD+ synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152026759|gb|ABS24527.1| NAD+ synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 567

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +SGG+DS++ A L     G  +V+GV +                +G    DA  + D
Sbjct: 312 IVGLSGGIDSALTACLAADALGAANVLGVAM-----------PSRYSSGHSREDAAALAD 360

Query: 82  TINVSHYVFDYEERF 96
            + +       E   
Sbjct: 361 HLGIPFKEISIEPMH 375


>gi|113474718|ref|YP_720779.1| GMP synthase [Trichodesmium erythraeum IMS101]
 gi|110165766|gb|ABG50306.1| GMP synthase (glutamine-hydrolyzing) [Trichodesmium erythraeum
           IMS101]
          Length = 575

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 19/192 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV++A+SGGVDSS +A LL +     IG  L      +   RK        ++     
Sbjct: 271 DKRVLLALSGGVDSSTLAFLLHQA----IGDKLTCMFIDQGFMRKYEPENLVKIFH---- 322

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
            ++ ++S    +  +RF + +                 +  +  ++       +++LG  
Sbjct: 323 -ESFHISVKYVNARDRFLSILKGVSDPEEKRK------LIGHEFIQV--FEEESKRLGPF 373

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +   +     +   R     +   + +    +     L  PL  + K+
Sbjct: 374 DYLAQGTLYPDVIESANTNVDPKTGERVAVKIKSH-HNVGGLPKDLRFKLVEPLRKLFKD 432

Query: 199 SVRDLAREMGLD 210
            VR++ R +GL 
Sbjct: 433 EVRNVGRSIGLP 444


>gi|283465249|gb|ADB23107.1| GMP synthase [Rhodopirellula sp. CS71]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|283465222|gb|ADB23095.1| GMP synthase [Rhodopirellula sp. 3S]
 gi|283465230|gb|ADB23098.1| GMP synthase [Rhodopirellula sp. 6C]
 gi|283465238|gb|ADB23102.1| GMP synthase [Rhodopirellula sp. CS11]
 gi|283465240|gb|ADB23103.1| GMP synthase [Rhodopirellula sp. CS115]
 gi|283465242|gb|ADB23104.1| GMP synthase [Rhodopirellula sp. CS68]
 gi|283465245|gb|ADB23105.1| GMP synthase [Rhodopirellula sp. CS7]
 gi|283465251|gb|ADB23108.1| GMP synthase [Rhodopirellula sp. CS8]
 gi|283465255|gb|ADB23110.1| GMP synthase [Rhodopirellula sp. J183]
 gi|283465285|gb|ADB23125.1| GMP synthase [Rhodopirellula sp. SM37]
 gi|283465287|gb|ADB23126.1| GMP synthase [Rhodopirellula sp. SM38]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|283465218|gb|ADB23093.1| GMP synthase [Rhodopirellula sp. 1SC]
          Length = 240

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|262039585|ref|ZP_06012880.1| GMP synthase (glutamine-hydrolyzing) [Leptotrichia goodfellowii
           F0264]
 gi|261746394|gb|EEY33938.1| GMP synthase (glutamine-hydrolyzing) [Leptotrichia goodfellowii
           F0264]
          Length = 514

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 29/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  V++A+SGGVDSSV A L+       IG  +T    ++    K +G            
Sbjct: 214 NEHVLLALSGGVDSSVAAVLINNA----IGKQLTCMFVDTGLLRKDEGKKVLEYYKEH-- 267

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTR-Q 135
                +N+     D ++RF N +                 +  N  ++ F++ +   + +
Sbjct: 268 ---FDLNIVF--VDAKDRFLNKLKGVDEPEAKRK------IIGNEFIQVFNEEIRKLKGK 316

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  LA G        +  D    + +  P    +            Q   L  PL ++
Sbjct: 317 EGAKFLAQG-------TIYPDVIESQSIKGPSHTIKSHHNVGGLPEDLQFE-LLEPLKEL 368

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 369 FKDEVRKVGHELGLP 383


>gi|238923740|ref|YP_002937256.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Eubacterium rectale ATCC 33656]
 gi|238875415|gb|ACR75122.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale ATCC 33656]
 gi|291525722|emb|CBK91309.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale DSM 17629]
          Length = 377

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 36/146 (24%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVTLQLYNSRKASK 62
           +N+ +L K     ++ V +SGG DS ++A L +   +      DV  + +          
Sbjct: 128 INTYELVKP--GDKIAVCISGGKDSMLMAKLFQELKHHNKFDFDVKFLVM-----DPGYN 180

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDC 120
                   ++       C  + +          F + +                 PC  C
Sbjct: 181 EANRHVIEEN-------CRNLGIP------ATIFESDIFDAVYDIEK-------SPCYLC 220

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHY 146
              ++   L +  ++LG + +A GH+
Sbjct: 221 -ARMRRGHLYAFAKELGCNKIALGHH 245


>gi|213582446|ref|ZP_03364272.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 108

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +V++ +SGGVDSSV A LL R  G ++  V 
Sbjct: 74  DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVF 106


>gi|199594466|gb|ACH90697.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +  +R+  A
Sbjct: 86  -AEHMGVKVVRVNAADRYFKA 105


>gi|167044658|gb|ABZ09329.1| putative arginosuccinate synthase [uncultured marine microorganism
           HF4000_APKG7H23]
          Length = 153

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    L      +V+ +T+ L                  + DAR   
Sbjct: 4   KIVLAYSGGLDTSVAIRWLMDQYSAEVVTLTVDL--------------GAVQLQDARERA 49

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             I  V   V D  + F N  + P   + +  E   P      R +    ++ V  + GA
Sbjct: 50  LQIGAVKAVVLDARQEFVNDFVWPALQAGSVYEHAYPLATALGRPLIAKLMVQVALEEGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 FAVAHG 115


>gi|15598721|ref|NP_252215.1| argininosuccinate synthase [Pseudomonas aeruginosa PAO1]
 gi|107103037|ref|ZP_01366955.1| hypothetical protein PaerPA_01004106 [Pseudomonas aeruginosa PACS2]
 gi|116051524|ref|YP_789640.1| argininosuccinate synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890248|ref|YP_002439112.1| argininosuccinate synthase [Pseudomonas aeruginosa LESB58]
 gi|254236450|ref|ZP_04929773.1| argininosuccinate synthase [Pseudomonas aeruginosa C3719]
 gi|254242185|ref|ZP_04935507.1| argininosuccinate synthase [Pseudomonas aeruginosa 2192]
 gi|296387972|ref|ZP_06877447.1| argininosuccinate synthase [Pseudomonas aeruginosa PAb1]
 gi|313108870|ref|ZP_07794853.1| argininosuccinate synthase [Pseudomonas aeruginosa 39016]
 gi|24211531|sp|Q9HY84|ASSY_PSEAE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|122260664|sp|Q02QZ6|ASSY_PSEAB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226729198|sp|B7UVV5|ASSY_PSEA8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|9949674|gb|AAG06913.1|AE004773_2 argininosuccinate synthase [Pseudomonas aeruginosa PAO1]
 gi|115586745|gb|ABJ12760.1| argininosuccinate synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168381|gb|EAZ53892.1| argininosuccinate synthase [Pseudomonas aeruginosa C3719]
 gi|126195563|gb|EAZ59626.1| argininosuccinate synthase [Pseudomonas aeruginosa 2192]
 gi|218770471|emb|CAW26236.1| argininosuccinate synthase [Pseudomonas aeruginosa LESB58]
 gi|310881355|gb|EFQ39949.1| argininosuccinate synthase [Pseudomonas aeruginosa 39016]
          Length = 405

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  RAMGVKEIYIDDLREEFVRDFVYPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|268316244|ref|YP_003289963.1| GMP synthase, large subunit [Rhodothermus marinus DSM 4252]
 gi|262333778|gb|ACY47575.1| GMP synthase, large subunit [Rhodothermus marinus DSM 4252]
          Length = 522

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 63/199 (31%), Gaps = 45/199 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSV A LL R  G  +  +            RKG          A+ 
Sbjct: 220 DEHVILGLSGGVDSSVAAVLLHRALGDRLTCIF-----VDNGLLRKGEA--------AQV 266

Query: 79  VC---DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V    D  ++     D    F      V+ P       G T +   +            +
Sbjct: 267 VATFRDHFHIRLKAVDAGALFLSRLEGVVDPEQKRKIIGATFIEVFEQATE-------EL 319

Query: 133 TRQLG------ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           TR+LG      A        I S  + G     +         E+           + + 
Sbjct: 320 TRELGRRPRFLAQGTLYPDVIESVSFRGPSATIKTHHNVGGLPEK--------LNFEIIE 371

Query: 187 DLRFPLGDMKKESVRDLAR 205
               P  ++ K+ VR + R
Sbjct: 372 ----PFRELFKDEVRAIGR 386


>gi|152989325|ref|YP_001347006.1| argininosuccinate synthase [Pseudomonas aeruginosa PA7]
 gi|166221007|sp|A6V1S1|ASSY_PSEA7 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|150964483|gb|ABR86508.1| argininosuccinate synthase [Pseudomonas aeruginosa PA7]
          Length = 405

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  RAMGVREIYIDDLREEFVRDFVYPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|115352073|ref|YP_773912.1| GMP synthase [Burkholderia ambifaria AMMD]
 gi|122322865|sp|Q0BE45|GUAA_BURCM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115282061|gb|ABI87578.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia ambifaria AMMD]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGK--------------- 266

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G  T +   +  R +   + + V     ++
Sbjct: 267 ------MVLDMFEGRLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQAEAQK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 321 LSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 374 LFKDEVRELGVALGLP 389


>gi|22537128|ref|NP_687979.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus agalactiae 2603V/R]
 gi|25011007|ref|NP_735402.1| GMP synthase [Streptococcus agalactiae NEM316]
 gi|76788259|ref|YP_329683.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus agalactiae A909]
 gi|76797788|ref|ZP_00780054.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus agalactiae 18RS21]
 gi|77405704|ref|ZP_00782791.1| GMP synthase [Streptococcus agalactiae H36B]
 gi|77412429|ref|ZP_00788735.1| GMP synthase [Streptococcus agalactiae CJB111]
 gi|44887960|sp|Q8E5M8|GUAA_STRA3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|44888000|sp|Q8DZX7|GUAA_STRA5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206833|sp|Q3K1C0|GUAA_STRA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|22533990|gb|AAM99851.1|AE014236_5 GMP synthase [Streptococcus agalactiae 2603V/R]
 gi|23095407|emb|CAD46612.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563316|gb|ABA45900.1| GMP synthase [Streptococcus agalactiae A909]
 gi|76586864|gb|EAO63356.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus agalactiae 18RS21]
 gi|77161520|gb|EAO72525.1| GMP synthase [Streptococcus agalactiae CJB111]
 gi|77175700|gb|EAO78482.1| GMP synthase [Streptococcus agalactiae H36B]
          Length = 520

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPC 117
            K +G       V D   +     ++    D  +RF +    V  P              
Sbjct: 264 RKNEGD-----QVMD--MLGGKFGLNIIRVDASKRFLDLLSGVEDP---ERKRKIIGNEF 313

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V       F D    ++  G D LA G        + + G       +           +
Sbjct: 314 VYV-----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------V 356

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    +L  PL  + K+ VR L   +G+ 
Sbjct: 357 GGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|242279024|ref|YP_002991153.1| GMP synthase [Desulfovibrio salexigens DSM 2638]
 gi|259647677|sp|C6BSD8|GUAA_DESAD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|242121918|gb|ACS79614.1| GMP synthase, large subunit [Desulfovibrio salexigens DSM 2638]
          Length = 515

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 40/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +VV+ +SGG+DS+VVA LL +  G  +  + +     R   + +      +
Sbjct: 211 EMREKIGDNQVVLGLSGGIDSTVVAVLLHKAIGKRLHCIFVDNGLLRMHEREEVIGFLEE 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGET----PLPCVDCNRTV 124
                      +NV     D  E F +    V  P       G T            + V
Sbjct: 271 HFE--------LNVKC--VDSAELFLDKLKGVEDPEKKRKLIGYTFIDVFNEEASALKDV 320

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF              LA G  +   +   +  K    + +           +    +  
Sbjct: 321 KF--------------LAQG-TLYPDVIESESFKGPSAVIKSHHN-------VGGLPEDM 358

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             DL  PL ++ K+ VR +A E+GL 
Sbjct: 359 DLDLVEPLRELFKDEVRKVAYELGLP 384


>gi|254247913|ref|ZP_04941234.1| GMP synthase [Burkholderia cenocepacia PC184]
 gi|124872689|gb|EAY64405.1| GMP synthase [Burkholderia cenocepacia PC184]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  ++F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASDQFL---------GHLAGVT---DPEAKRKIIGREFVEVLQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|325528227|gb|EGD05401.1| GMP synthase [Burkholderia sp. TJI49]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFQGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEQKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLTNAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|302866860|ref|YP_003835497.1| argininosuccinate synthase [Micromonospora aurantiaca ATCC 27029]
 gi|302569719|gb|ADL45921.1| argininosuccinate synthase [Micromonospora aurantiaca ATCC 27029]
          Length = 401

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L +R G +VI V             +      Q   D   V 
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAERTGAEVIAV-----AVDVGQGGEDMTVIRQRALDCGAV- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                   V D  + F     +P   + A      P V   +R +    L++  R  G  
Sbjct: 58  -----ESEVVDARDEFAADYCLPAIRANALYMDRYPLVSALSRPLIVKHLVAAARAYGGT 112

Query: 140 VLATG 144
           +++ G
Sbjct: 113 IVSHG 117


>gi|227546020|ref|ZP_03976069.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213654|gb|EEI81503.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 520

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPEDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|295838491|ref|ZP_06825424.1| GMP synthase [Streptomyces sp. SPB74]
 gi|197699566|gb|EDY46499.1| GMP synthase [Streptomyces sp. SPB74]
          Length = 527

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   V
Sbjct: 223 KRAICGLSGGVDSAVAAALVQRAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
             T  V   V D  ERF +A+             G   +   +  +    ++  +     
Sbjct: 274 AAT-GVQLKVVDAAERFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAE--NAADGA 330

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               L  G      +  G  G       +           +    +    +L  PL  + 
Sbjct: 331 DVAFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPEDLEFELIEPLRKLF 381

Query: 197 KESVRDLAREMGLD 210
           K+ VR + +E+GL 
Sbjct: 382 KDEVRAVGQELGLP 395


>gi|146322787|ref|XP_749563.2| argininosuccinate synthase [Aspergillus fumigatus Af293]
 gi|129556802|gb|EAL87525.2| argininosuccinate synthase [Aspergillus fumigatus Af293]
 gi|159128973|gb|EDP54087.1| argininosuccinate synthase [Aspergillus fumigatus A1163]
          Length = 416

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V +A SGG+D+SV+   L  +GY+V+  T              +    +D    R 
Sbjct: 2   SKGKVCLAFSGGLDTSVILKWLIDEGYEVVAFT-------------ANVGQEEDFDAIRE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               +  V   + D    F   +  P  +  A  E          R V     + V ++ 
Sbjct: 49  KALKLGAVKCEIADLRREFIEQLCFPAIACNAIYENVYLLGTSLARPVIARAQIDVAKRE 108

Query: 137 GADVLATG 144
           G   ++ G
Sbjct: 109 GCFAVSHG 116


>gi|46190409|ref|ZP_00121545.2| COG0519: GMP synthase, PP-ATPase domain/subunit [Bifidobacterium
           longum DJO10A]
 gi|189439565|ref|YP_001954646.1| GMP synthase [Bifidobacterium longum DJO10A]
 gi|312132974|ref|YP_004000313.1| guaa1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688874|ref|YP_004208608.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322690849|ref|YP_004220419.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|189428000|gb|ACD98148.1| GMP synthase [Bifidobacterium longum DJO10A]
 gi|291517080|emb|CBK70696.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp.
           longum F8]
 gi|311773957|gb|ADQ03445.1| GuaA1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455705|dbj|BAJ66327.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320460210|dbj|BAJ70830.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 520

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPEDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|288803674|ref|ZP_06409104.1| GMP synthase [Prevotella melaninogenica D18]
 gi|288333914|gb|EFC72359.1| GMP synthase [Prevotella melaninogenica D18]
          Length = 514

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 47/201 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL +  G ++  +     +     K + +      V DA +
Sbjct: 213 NDRVILGLSGGVDSSVCAVLLNKAIGKNLTCIF---VDHGMLRKNEFT-----KVMDAYK 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
               + ++    D  E+F              G T     +  R +   D + V     +
Sbjct: 265 ---GLGLNVIGVDASEQFFKD---------LEGVT---DPEQKRKIIGRDFVEVFNAEAK 309

Query: 135 QL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ++  A  LA        I S    G   K                  +    ++    L 
Sbjct: 310 KITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPEEMHLQLC 355

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR +  E+G+ 
Sbjct: 356 EPLRWLFKDEVRRVGYELGMP 376


>gi|218282969|ref|ZP_03489071.1| hypothetical protein EUBIFOR_01657 [Eubacterium biforme DSM 3989]
 gi|218216163|gb|EEC89701.1| hypothetical protein EUBIFOR_01657 [Eubacterium biforme DSM 3989]
          Length = 515

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A LL +  G  +  V     +     K +G         +   
Sbjct: 216 DGKVLCALSGGVDSSVAAVLLSKAIGNQLTCVF---VDHGLLRKNEGDEVEAVFGPEG-- 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                 ++    + ++R+   +         A       +     ++        +++G 
Sbjct: 271 ---PYELNFIRVNAQQRYYEKLKG--VEEPEAKRK----IIGEEFIRV--FEEEAKKIGK 319

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G+          + +               ++  PL D+ K
Sbjct: 320 VDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDHVDFKEIIEPLRDLFK 371

Query: 198 ESVRDLAREMGLD 210
           + VR    E+G+ 
Sbjct: 372 DEVRKAGLELGIP 384


>gi|78358650|ref|YP_390099.1| hypothetical protein Dde_3611 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221055|gb|ABB40404.1| Protein of unknown function UPF0021 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 302

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+VA+SGG DS  +  +L + GY+V G+ + L          GS    + V    R 
Sbjct: 47  EDRVLVALSGGKDSLALMLVLSKLGYNVTGLHIDL-------AIPGSSPVARGV--VERF 97

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C        V +  E     + +P            P       +K           G  
Sbjct: 98  CHKHGFKLIVKEMAEE---GLAIPLV----KARLNRPVCSACGKIKRYFFNKTALDEGYT 150

Query: 140 VLATGHYI 147
           VLATGH +
Sbjct: 151 VLATGHNL 158


>gi|307594357|ref|YP_003900674.1| argininosuccinate synthase [Vulcanisaeta distributa DSM 14429]
 gi|307549558|gb|ADN49623.1| argininosuccinate synthase [Vulcanisaeta distributa DSM 14429]
          Length = 410

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 38/200 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  ++ +A SGG+D++V    L+     +VI VT                    D  D  
Sbjct: 16  KPSKIALAYSGGLDTTVAIHWLREKFNAEVITVT-------------VDVGQDDDFRDIE 62

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQ 135
                   + HY  D +  F    +     + A  E   P      R +    ++ V ++
Sbjct: 63  ERAYKAGAIKHYTIDAKRDFAEGPVAMAIMANALYEDRYPLGTALARPLIAEKVVEVAKR 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--LG 193
            G D +A G                    +  D  R     +       +     P  + 
Sbjct: 123 EGCDAIAHGSTS-----------------KGNDQVRFNEALMALAPDLMI---IEPAKIW 162

Query: 194 DMKKESVRDLAREMGLDIAD 213
            M +    + AR+ G+ I  
Sbjct: 163 GMNRAEEVEYARKHGIPIPS 182


>gi|261749408|ref|YP_003257093.1| argininosuccinate synthase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497500|gb|ACX83950.1| argininosuccinate synthase(argG)/acetyltransferase activity of
           N-acetylglutamate synthase (argA) [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 588

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+S     L ++GY++  V                    +++   +    
Sbjct: 195 KIVLAYSGGLDTSYCLKYLLQEGYEIHTV-----------IINTGGFKEEELKKIQERAL 243

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD--LLSVTRQLGA 138
            I  +SH   D  E +    I              P    +  + F    +      + A
Sbjct: 244 NIGAISHRTIDAIEEYYQNCIKYLIFGNILKNNTYPLSVSSERI-FQAIKIAQYATNIKA 302

Query: 139 DVLATG 144
             +A G
Sbjct: 303 KAIAHG 308


>gi|170704055|ref|ZP_02894692.1| GMP synthase, large subunit [Burkholderia ambifaria IOP40-10]
 gi|170131034|gb|EDS99724.1| GMP synthase, large subunit [Burkholderia ambifaria IOP40-10]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGK--------------- 266

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSV----TRQ 135
                  V D +E R    V+   AS    G  T +   +  R +   + + V     ++
Sbjct: 267 ------MVLDMFEGRLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQAEAQK 320

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           L  A  LA G      +  G    ++    +           +    +     L  PL D
Sbjct: 321 LSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEPLRD 373

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L   +GL 
Sbjct: 374 LFKDEVRELGVALGLP 389


>gi|157412374|ref|YP_001483240.1| GMP synthase [Prochlorococcus marinus str. MIT 9215]
 gi|226739661|sp|A8G223|GUAA_PROM2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157386949|gb|ABV49654.1| GMP synthase, PP-ATPase domain/subunit [Prochlorococcus marinus
           str. MIT 9215]
          Length = 528

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 21/193 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++A+SGGVDSS +A LL +     IG  L      +   RKG      + +D    
Sbjct: 224 NKKVLLALSGGVDSSTLAFLLNKA----IGNQLTCMFIDQGFMRKGEPEFLMNFFD---- 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
               ++     +  +RF + +                 +     ++       + +LG  
Sbjct: 276 -KKFHIKVEYINARKRFISKLKGITEPEQKRK------IIGEEFIRV--FEEESNRLGPF 326

Query: 139 DVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             LA G  Y       G +   +      + ++   +  +    +     L  PL  + K
Sbjct: 327 QYLAQGTLYPDVIESAGTNIDPKTGERIAVKIKSHHN--VGGLPKDLQFKLVEPLRKLFK 384

Query: 198 ESVRDLAREMGLD 210
           + VR +   +GL 
Sbjct: 385 DEVRQVGAALGLP 397


>gi|55379147|ref|YP_136997.1| NAD synthetase [Haloarcula marismortui ATCC 43049]
 gi|55231872|gb|AAV47291.1| NH(3)-dependent NAD(+) synthetase [Haloarcula marismortui ATCC
           43049]
          Length = 277

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++V+ L     G D V G+ +                   ++ DA RV 
Sbjct: 46  VVMGLSGGIDSTLVSHLAVEALGRDAVHGLVM-----------PSEVNRADNMSDAERVA 94

Query: 81  -DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            D + + + V +         +  F  +Y   E     V  N  V+   +L+        
Sbjct: 95  NDLLGIEYDVIEINPL-----VDTFLDAYPDAEGDQLAVG-NLRVRCRAVLNYLVGNHEQ 148

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G   RS   VG                    Y+         C    P+  + K+ 
Sbjct: 149 ALVLGTGNRSEALVG--------------------YYTKYGDGAVDCH---PIAALYKQQ 185

Query: 200 VRDLAREMGLD 210
           VR LA+ +G+ 
Sbjct: 186 VRQLAKHVGVP 196


>gi|33863984|ref|NP_895544.1| hypothetical protein PMT1717 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635568|emb|CAE21892.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 288

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 57/202 (28%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-G---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV VA SGGVDS++VAA+ +   G   + V GV+  L              A + + +AR
Sbjct: 37  RVCVAYSGGVDSALVAAIAREQLGPQAFAVTGVSPAL--------------APELLDEAR 82

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQL 136
           +    + + H                        E   P    N T + F+    + R L
Sbjct: 83  QQAAWLEIRH------------------QECMTQELDDPAYSSNPTDRCFACKRELHRHL 124

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G     A G  +   +   D G+ R  +                        +R PL ++
Sbjct: 125 GSIAQSAGGAQVVDGVNHDDLGEHRPGIEAGRQAG-----------------VRSPLAEL 167

Query: 196 K--KESVRDLAREMGLDIADKS 215
           +  K  VR ++R +G    DK 
Sbjct: 168 EIGKAGVRQMSRALGFPWWDKP 189


>gi|13475627|ref|NP_107194.1| NAD synthetase [Mesorhizobium loti MAFF303099]
 gi|25090786|sp|Q988H0|NADE_RHILO RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|14026383|dbj|BAB52980.1| NH(3)-dependent NAD(+) synthetase [Mesorhizobium loti MAFF303099]
          Length = 319

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 13/66 (19%)

Query: 23 VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          VVV +SGG+DSSVVA L  R  G D V+G+ +     R +S        G  +   RRV 
Sbjct: 30 VVVGLSGGIDSSVVATLCTRAFGKDKVLGLFM---PERDSS--------GDSLRLGRRVA 78

Query: 81 DTINVS 86
            + + 
Sbjct: 79 AQLGIE 84


>gi|77408612|ref|ZP_00785347.1| GMP synthase [Streptococcus agalactiae COH1]
 gi|77172805|gb|EAO75939.1| GMP synthase [Streptococcus agalactiae COH1]
          Length = 520

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPC 117
            K +G       V D   +     ++    D  +RF +    V  P              
Sbjct: 264 RKNEGD-----QVMD--MLGGKFGLNIIRVDASKRFLDLLSGVEDP---ERKRKIIGNEF 313

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V       F D    ++  G D LA G        + + G       +           +
Sbjct: 314 VYV-----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------V 356

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    +L  PL  + K+ VR L   +G+ 
Sbjct: 357 GGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|107028831|ref|YP_625926.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia cenocepacia AU 1054]
 gi|116690010|ref|YP_835633.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia cenocepacia HI2424]
 gi|170733345|ref|YP_001765292.1| GMP synthase [Burkholderia cenocepacia MC0-3]
 gi|123070961|sp|Q1BHF2|GUAA_BURCA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738398|sp|B1JUC0|GUAA_BURCC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738399|sp|A0K8B3|GUAA_BURCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|105897995|gb|ABF80953.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia cenocepacia AU
           1054]
 gi|116648099|gb|ABK08740.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia cenocepacia
           HI2424]
 gi|169816587|gb|ACA91170.1| GMP synthase, large subunit [Burkholderia cenocepacia MC0-3]
          Length = 539

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  ++F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASDQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|67474924|ref|XP_653193.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56470124|gb|EAL47807.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 250

 Score = 51.3 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 21/143 (14%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDV---IGVTLQL-YNSRKASKR 63
           ++N  +    P D ++++  SGG DS     LL      V   +G T     +       
Sbjct: 23  KMNEREKIVAPHD-KIIIGFSGGKDS----FLLV----HVLSTLGKTSHFPLDILVVHVT 73

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                   ++ D++ +C+++ +     +        V            T   C++C + 
Sbjct: 74  NEQVGYQLNIEDSKALCESLGIPFITLE-----SEPVSRFDIEDADKNTTF--CLNCGKN 126

Query: 124 VKFSDLLSVTRQLGADVLATGHY 146
            +   LL   ++ G   +A GH+
Sbjct: 127 RR-RALLEYAKEHGYTSIALGHH 148


>gi|322388227|ref|ZP_08061831.1| GMP synthase [Streptococcus infantis ATCC 700779]
 gi|321140899|gb|EFX36400.1| GMP synthase [Streptococcus infantis ATCC 700779]
          Length = 414

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 222 TMDNFIEMQIKQIREKVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHG 276

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG      ++     +     ++    D  +RF + +                 V  
Sbjct: 277 LLRKGEADQVMEM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV 331

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 332 -----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 374

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 375 PEDMQFELIEPLNTLYKDEVRALGTELGMP 404


>gi|283465220|gb|ADB23094.1| GMP synthase [Rhodopirellula sp. 2S]
          Length = 240

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|239621924|ref|ZP_04664955.1| GMP synthase [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515115|gb|EEQ54982.1| GMP synthase [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 520

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  + F            +  +I   F  ++   +                
Sbjct: 269 T-GIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           +L      G +V            V   G       +           +    +     L
Sbjct: 314 VLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHN-------VGGLPEDIKFQL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|154483514|ref|ZP_02025962.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC
           27560]
 gi|149735424|gb|EDM51310.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 28/140 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL---LKR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS  +      LKR     +DV+ +T+ L            
Sbjct: 16  DYNMINDGDKIAVGISGGKDSLTLLYALNGLKRFYPKKFDVVAITVDL------------ 63

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               QD     + C+ +++ +YV       +  +     +         PC  C +  K 
Sbjct: 64  DFGIQDFSKIEKYCNDMDIEYYVV------KTEIANVVFNERQES---NPCSLCAKMRK- 113

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L    + +G + +A  H+
Sbjct: 114 GALNDFAKSIGCNKIAYAHH 133


>gi|18978130|ref|NP_579487.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18893931|gb|AAL81882.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 319

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 31/232 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  +V VA+SGG DS V+  +L    K+  ++++ +T+                  + V
Sbjct: 45  KRGEKVGVAVSGGKDSVVLMHILAKLRKKFPFELVAITI---------DEGIKGYRDKSV 95

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-----CVDCNRTVKFSD 128
             AR+  + + V H+++ +        I            P       C  C    ++  
Sbjct: 96  EVARKNAELLGVEHHIYRF-----KDFIGFTLDETVEIMGPREERVGACSYCGVWRRW-L 149

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L     +LG D LA G  +   + V         + R       ++   +    + L   
Sbjct: 150 LNKAAEELGVDKLALGLNLDDEVQV-----FLMNLMRGDVARLGRTGPYYEVIHEGLVPR 204

Query: 189 RFPLGDMKKESVRDLAREMGLDI--ADKSDSQDICFVQQGKYFDVVKRINAG 238
             PL ++ ++ +   A    +++  ++   + +    +   + + ++  + G
Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYATEAFRAEIRDWLNEMEEKHPG 256


>gi|220931051|ref|YP_002507959.1| GMP synthase (glutamine-hydrolyzing) [Halothermothrix orenii H 168]
 gi|254800102|sp|B8D0Z5|GUAA_HALOH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|219992361|gb|ACL68964.1| GMP synthase (glutamine-hydrolyzing) [Halothermothrix orenii H 168]
          Length = 510

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 61/193 (31%), Gaps = 36/193 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V + ++ R  G  +  +            RKG     +     R   D
Sbjct: 218 VISGLSGGVDSAVASTMVHRAIGDQLTCIF-----VDHGLLRKGEAEQVK-----RTFVD 267

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             N+     D  ERF N    V  P       GE                     R+LG 
Sbjct: 268 EFNIPLVYVDARERFLNRLNGVKDPETKRKIIGEEF-----------IRVFEEEARKLGD 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  L  G      +  G +          +    D   F           L  PL ++ K
Sbjct: 317 ARYLVQGTLYSDVIESGSETAETIKSHHNVGGLPDNMDF----------KLIEPLRNLFK 366

Query: 198 ESVRDLAREMGLD 210
           + VR +   +GL 
Sbjct: 367 DEVRKIGEVLGLP 379


>gi|331089846|ref|ZP_08338739.1| GMP synthase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330403543|gb|EGG83101.1| GMP synthase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 515

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+ A+SGGVDSSV A +L +  G  +  V      L+  +     +         D+
Sbjct: 216 DGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVFVDHGLLR-KDEGDEVEAVFGPEGPYDL 274

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                            + +ERF   +                 +     ++        
Sbjct: 275 N------------FIRVNAQERFYAKLKG--VEEPEEKRK----IIGEEFIRV--FEEEA 314

Query: 134 RQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++GA D L  G      +  G  G+          + +               ++  PL
Sbjct: 315 KKIGAVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPL 366

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR    E+G+ 
Sbjct: 367 RDLFKDEVRKAGLELGIP 384


>gi|283465269|gb|ADB23117.1| GMP synthase [Rhodopirellula baltica]
          Length = 250

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 182


>gi|282896354|ref|ZP_06304376.1| Asparagine synthase (Glutamine-hydrolyzing) [Raphidiopsis brookii
           D9]
 gi|281198850|gb|EFA73729.1| Asparagine synthase (Glutamine-hydrolyzing) [Raphidiopsis brookii
           D9]
          Length = 611

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           DL+  P    V V +SGG+DSS+VAALL   G  V    L                   +
Sbjct: 226 DLNHEP----VGVFLSGGLDSSIVAALLVESGVKVRAYALDFGEFG-----------TSE 270

Query: 73  VYDARRVCDTINVSHYVFDYE 93
              A++V + +N+     D  
Sbjct: 271 YPYAQKVAEFLNIPLVKVDVS 291


>gi|269128442|ref|YP_003301812.1| GMP synthase large subunit [Thermomonospora curvata DSM 43183]
 gi|268313400|gb|ACY99774.1| GMP synthase, large subunit [Thermomonospora curvata DSM 43183]
          Length = 527

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 71/197 (36%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   
Sbjct: 222 GKRAICGLSGGVDSAVAAALVQRAIGSRLTCVF-----VDHGLLRKGEAEQVE--KD--F 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V  +V D +ERF +A          AG T     +  R +   + + V  Q   
Sbjct: 273 VAAT-GVQLHVVDAQERFLSA---------LAGVT---DPETKRKIIGREFIRVFEQAAR 319

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +++A        +     G     +            +   + +    +     L  PL 
Sbjct: 320 EIVAAHSGEDDDVEFLVQGTLYPDVVESGGGTGAANIKSH-HNVGGLPEDLKFKLVEPLR 378

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  ++GL 
Sbjct: 379 TLFKDEVRALGEQLGLP 395


>gi|153815912|ref|ZP_01968580.1| hypothetical protein RUMTOR_02157 [Ruminococcus torques ATCC 27756]
 gi|145846731|gb|EDK23649.1| hypothetical protein RUMTOR_02157 [Ruminococcus torques ATCC 27756]
          Length = 471

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D +V+ A+SGGVDSSV A +L +  G  +  V      L+  +     +         D+
Sbjct: 172 DGKVLCALSGGVDSSVAAVMLSKAIGKQLTCVFVDHGLLR-KDEGDEVEAVFGPEGPYDL 230

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                            + +ERF   +                 +     ++        
Sbjct: 231 N------------FIRVNAQERFYAKLKG--VEEPEEKRK----IIGEEFIRV--FEEEA 270

Query: 134 RQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +++GA D L  G      +  G  G+          + +               ++  PL
Sbjct: 271 KKIGAVDFLVQGTIYPDVVESGLGGE--------SAVIKSHHNVGGLPDYVDFKEIIEPL 322

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR    E+G+ 
Sbjct: 323 RDLFKDEVRKAGLELGIP 340


>gi|303238932|ref|ZP_07325463.1| Queuosine synthesis-like protein [Acetivibrio cellulolyticus CD2]
 gi|302593565|gb|EFL63282.1| Queuosine synthesis-like protein [Acetivibrio cellulolyticus CD2]
          Length = 267

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VVA SGGVDSS    LLK   +DV+G      N+  A   K +    ++  +A    +  
Sbjct: 21  VVAFSGGVDSS---FLLKVA-FDVLG------NNVLAVTAKSATFPEREYNEAVEFINKY 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H     EE               A  +   C  C   + FS +  + ++     +  
Sbjct: 71  GIRHLTIASEELELEGF---------AQNSTNRCYICKHEL-FSKINDIAKKENLKYVF- 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESVR 201
                       +G     +          S F       +   +  PL   ++ K+ +R
Sbjct: 120 ------------EGSNHDDL----------SDFRPGLKAVEELLVVSPLREAELTKDDIR 157

Query: 202 DLAREMGLDIADKS 215
            L++EMGL   DK 
Sbjct: 158 FLSKEMGLSTWDKP 171


>gi|283465247|gb|ADB23106.1| GMP synthase [Rhodopirellula sp. CS70]
          Length = 240

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 144 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 175


>gi|283465232|gb|ADB23099.1| GMP synthase [Rhodopirellula sp. 7C]
          Length = 279

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 146 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 177


>gi|225870537|ref|YP_002746484.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           equi 4047]
 gi|254800116|sp|C0MAM2|GUAA_STRE4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225699941|emb|CAW93884.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           equi 4047]
          Length = 520

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 208 MDNFIDMQIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF +           AG   +   + 
Sbjct: 264 RKNEGDQVME-------MLGGRFGLNIIRVDASKRFLD---------LLAG---VEDPEK 304

Query: 121 NRTVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +  ++ +       ++  G D LA G        + + G       +          
Sbjct: 305 KRKIIGNEFVYVFDDEASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 355

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 356 -VGGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|78777049|ref|YP_393364.1| NAD(+) synthase [Sulfurimonas denitrificans DSM 1251]
 gi|78497589|gb|ABB44129.1| NH(3)-dependent NAD(+) synthetase [Sulfurimonas denitrificans DSM
           1251]
          Length = 257

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 41/195 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             VV+ +SGG+DS+VVA L  R    V G      ++    K      +   + DA    
Sbjct: 25  KNVVLGLSGGIDSAVVALLASR----VFG------DNLLCVKMPSHYSSQSSLDDADEFS 74

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
              N+               I P   +Y       P +D  R     +L +  R      
Sbjct: 75  LAFNLRSITSS---------IEPMLKAYEE---VNPDMDNLRR---GNLSARLRMSTLFD 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L+  H   + L +G   K   ++              + T    L     P+GD+ K  V
Sbjct: 120 LSAKH---NALVLGTSNKSELML-------------GYGTLYGDLACALNPIGDLYKSEV 163

Query: 201 RDLAREMGLDIADKS 215
            +LA  + +  +   
Sbjct: 164 YELAEYLNVTNSIMK 178


>gi|78214105|ref|YP_382884.1| ExsB [Synechococcus sp. CC9605]
 gi|110816272|sp|Q3AGF3|QUEC_SYNSC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|78198564|gb|ABB36329.1| ExsB [Synechococcus sp. CC9605]
          Length = 226

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 67/201 (33%), Gaps = 29/201 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+  AAL    G  VIG+          S   G     +++  A  V   +
Sbjct: 7   IALLSGGLDSATAAALALEQGDRVIGL----------SFDYGQ-RHLRELDAAAAVAQQL 55

Query: 84  NV-SHYV--FDYE----ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +  H+    +          +A I         G  P   V    TV  S  LS+    
Sbjct: 56  GLAEHHCISVNLASWGGSALTDASISIPTDGVEEGRIPPTYVPGRNTVFISVGLSLAEAR 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD---LRFPLG 193
           GA+ L  G          D        CRP  L   Q+    A+   +      L  PL 
Sbjct: 116 GAERLVLGVNAVDYSGYPD--------CRPDYLNAFQTLADLASKAGREGHGAQLWAPLV 167

Query: 194 DMKKESVRDLAREMGLDIADK 214
              K  + + A  +G+ I   
Sbjct: 168 QWSKVRIVEEALRLGVPIETT 188


>gi|73967742|ref|XP_849895.1| PREDICTED: similar to Argininosuccinate synthase
           (Citrulline--aspartate ligase) isoform 3 [Canis
           familiaris]
 gi|73967748|ref|XP_860201.1| PREDICTED: similar to Argininosuccinate synthase
           (Citrulline--aspartate ligase) isoform 5 [Canis
           familiaris]
          Length = 412

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|73540502|ref|YP_295022.1| ExsB [Ralstonia eutropha JMP134]
 gi|110816249|sp|Q474K5|QUEC_RALEJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|72117915|gb|AAZ60178.1| ExsB [Ralstonia eutropha JMP134]
          Length = 226

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +V +SGG+DS+ V A+ K  G++   ++++                  ++  A++V 
Sbjct: 3  KRAIVLLSGGLDSATVLAMAKAQGFETYALSMRY-----------GQRHSSELDAAKQVA 51

Query: 81 DTIN-VSHYVFDY 92
            +  V H + D 
Sbjct: 52 SALGAVRHEIVDL 64


>gi|304314038|ref|YP_003849185.1| thiamine biosynthesis protein [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587497|gb|ADL57872.1| predicted thiamine biosynthesis protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 380

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 39/193 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V   LL + G  V+ V          +       A + +    ++
Sbjct: 168 QGKVVALLSGGIDSPVATYLLMKRGCQVVAVH---------TDNSPFT-APESLDKVEKI 217

Query: 80  CDTINVSHYVFDYEERFRNAVIVP--FASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQL 136
              +      +     F+  +     +             CV C   + +     V  + 
Sbjct: 218 ASKL----EEYSAGVEFKLRIFRYGSYLEKCRREAPENMTCVLCKAGM-YRLAEMVAEEE 272

Query: 137 GADVLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           GA  +  G  + +       +    R+  R                      +  PL  M
Sbjct: 273 GALAIVDGSSLGQVASQTLPNILATRMAVRMP--------------------VLSPLIGM 312

Query: 196 KKESVRDLAREMG 208
            K  +  LA+ +G
Sbjct: 313 DKVEIEALAKRIG 325


>gi|315503275|ref|YP_004082162.1| argininosuccinate synthase [Micromonospora sp. L5]
 gi|315409894|gb|ADU08011.1| argininosuccinate synthase [Micromonospora sp. L5]
          Length = 401

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L +R G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAERTGAEVIAV------------AVDVGQGGEDMAVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L++  R  G 
Sbjct: 52  LDCGAVESEVVDARDEFAADYCLPAIRANALYMDRYPLVSALSRPLIVKHLVAAARAHGG 111

Query: 139 DVLATG 144
            +++ G
Sbjct: 112 TIVSHG 117


>gi|114627208|ref|XP_001165570.1| PREDICTED: hypothetical protein [Pan troglodytes]
          Length = 452

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 47  VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 99

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 100 -----FIEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 147

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 148 REGAKYVSHG 157


>gi|316971965|gb|EFV55675.1| GMP synthase [Trichinella spiralis]
          Length = 465

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 29/207 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + +  SGGVDS+V A LL++  G   VI V +     RK    +         +D +   
Sbjct: 4   IAILCSGGVDSTVCAVLLRKALGKSKVIPVFIDNGFLRKNEATEVVEMLKSLDFDVK--- 60

Query: 81  DTINVSHYVFDYEERF--RNAVIVPFASSY----AAGETPLPCVDCNRTVKFSDLLSVTR 134
                S+ ++     F      I      +     A E  + C  CN  +K   +     
Sbjct: 61  ----CSYCLYSCVCPFNKSREFIHSTLPIHDKLLGAFEDAMLCRTCNPEMKRRIIGDTFM 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRP--------MDLER---DQSYFLFATTQQ 183
           ++    +A    +  +      G  R  +            D  +   + +  + A   +
Sbjct: 117 RM-IKYIARQLKLNMKEVYLAQGTLRPDLIESASQLVSSHADTIKTHHNDTSLVRAL--R 173

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               +  PL D  K+ VR LAR++ L 
Sbjct: 174 ACGRIIEPLKDFHKDEVRALARDLNLP 200


>gi|291535866|emb|CBL08978.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Roseburia intestinalis M50/1]
          Length = 412

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 28/139 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC---- 68
           D +      ++ V +SGG DS ++A L +            LY   K +      C    
Sbjct: 165 DYEMIKDGDKIAVCISGGKDSMLLAKLFQE-----------LYRHGKRNFGLVFLCMNPG 213

Query: 69  -AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              ++    +     +++          F   +         A     PC  C   ++  
Sbjct: 214 YNEENWRIIQENAKLLDIPLTT------FETQIFDSV-----AEVDKNPCYLC-ARMRRG 261

Query: 128 DLLSVTRQLGADVLATGHY 146
            L S  ++LG + +A GH+
Sbjct: 262 YLYSKAKELGCNKIALGHH 280


>gi|240145943|ref|ZP_04744544.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257201930|gb|EEV00215.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 415

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 28/139 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC---- 68
           D +      ++ V +SGG DS ++A L +            LY   K +      C    
Sbjct: 168 DYEMIKDGDKIAVCISGGKDSMLLAKLFQE-----------LYRHGKRNFGLVFLCMNPG 216

Query: 69  -AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              ++    +     +++          F   +         A     PC  C   ++  
Sbjct: 217 YNEENWRIIQENAKLLDIPLTT------FETQIFDSV-----AEVDKNPCYLC-ARMRRG 264

Query: 128 DLLSVTRQLGADVLATGHY 146
            L S  ++LG + +A GH+
Sbjct: 265 YLYSKAKELGCNKIALGHH 283


>gi|282860894|ref|ZP_06269960.1| GMP synthase, large subunit [Streptomyces sp. ACTE]
 gi|282564630|gb|EFB70166.1| GMP synthase, large subunit [Streptomyces sp. ACTE]
          Length = 530

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   V
Sbjct: 227 KRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 277

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T  V   V D E+RF +A+                 +      +   +          
Sbjct: 278 AAT-GVQLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAEAAEGEDVA 336

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G      +  G  G       +           +    +     L  PL  + K+ 
Sbjct: 337 FLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPEDIEFQLVEPLRQLFKDE 387

Query: 200 VRDLAREMGLD 210
           VR + +E+GL 
Sbjct: 388 VRMVGQELGLP 398


>gi|213026466|ref|ZP_03340913.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 342

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +V++ +SGGVDSSV A LL R  G ++  V 
Sbjct: 201 DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVF 233


>gi|73967744|ref|XP_537813.2| PREDICTED: similar to argininosuccinate synthetase isoform 1 [Canis
           familiaris]
          Length = 393

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|61657492|emb|CAI44404.1| hypothetical protein [Thermotoga sp. KOL6]
          Length = 304

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 30/139 (21%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            KD ++++A+SGG DS V    +LK+ GYDV  + ++                   V  A
Sbjct: 45  KKDSKILIAVSGGKDS-VSLWHILKKLGYDVDALFIR-------------AGKSAMVQKA 90

Query: 77  RRV----CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           + +     + +N   +V D  + F       I              P       V+   +
Sbjct: 91  QEIVEKNAEILNTKLHVVDATQYFDGLSTQEISIILRR--------PVCSICGVVRRYLM 142

Query: 130 LSVTRQLGADVLATGHYIR 148
                + G DV+ TGH + 
Sbjct: 143 NKFAYENGYDVVVTGHNLN 161


>gi|21223164|ref|NP_628943.1| GMP synthase [Streptomyces coelicolor A3(2)]
 gi|256785738|ref|ZP_05524169.1| GMP synthase [Streptomyces lividans TK24]
 gi|289769630|ref|ZP_06529008.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           lividans TK24]
 gi|13627139|sp|Q9L0H2|GUAA_STRCO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7320904|emb|CAB82024.1| GMP synthase [Streptomyces coelicolor A3(2)]
 gi|289699829|gb|EFD67258.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           lividans TK24]
          Length = 526

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 28/195 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   
Sbjct: 224 DRRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--F 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T  V   V D  ERF  A+             G   +   +  +       L + R+
Sbjct: 275 VAAT-GVQLKVVDASERFLGALAGVSDPEQKRKIIGREFIRVFEQAQ-------LEIMRE 326

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G +V            V   G       +           +         +L  PL  +
Sbjct: 327 DGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPDDIEFELVEPLRQL 379

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + +E+GL 
Sbjct: 380 FKDEVRMVGQELGLP 394


>gi|29349673|ref|NP_813176.1| GMP synthase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569956|ref|ZP_04847365.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 1_1_6]
 gi|44887957|sp|Q89ZV6|GUAA1_BACTN RecName: Full=GMP synthase [glutamine-hydrolyzing] 1; AltName:
           Full=GMP synthetase 1; AltName: Full=Glutamine
           amidotransferase 1
 gi|29341583|gb|AAO79370.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840337|gb|EES68419.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 1_1_6]
          Length = 507

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 29/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +VV+ +SGGVDSSV A LL R  G ++  +     +     K +              
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF---VDHGMLRKNEFKNVMNDY------ 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + ++    D  E+F             AG T  P  +  R +     + V   + A
Sbjct: 264 --ECLGLNVIGVDASEKFFAE---------LAGVT-EP--ERKRKIIGKGFIDV-FDVEA 308

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +    ++       D  +   I    +    +    +    ++    L  PL  + K+
Sbjct: 309 HKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMHLKLCEPLRLLFKD 364

Query: 199 SVRDLAREMGLD 210
            VR + RE+G+ 
Sbjct: 365 EVRRVGRELGMP 376


>gi|298383937|ref|ZP_06993498.1| GMP synthase [Bacteroides sp. 1_1_14]
 gi|298263541|gb|EFI06404.1| GMP synthase [Bacteroides sp. 1_1_14]
          Length = 507

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 29/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +VV+ +SGGVDSSV A LL R  G ++  +     +     K +              
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF---VDHGMLRKNEFKNVMNDY------ 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + ++    D  E+F             AG T  P  +  R +     + V   + A
Sbjct: 264 --ECLGLNVIGVDASEKFFAE---------LAGVT-EP--ERKRKIIGKGFIDV-FDVEA 308

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +    ++       D  +   I    +    +    +    ++    L  PL  + K+
Sbjct: 309 HKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMHLKLCEPLRLLFKD 364

Query: 199 SVRDLAREMGLD 210
            VR + RE+G+ 
Sbjct: 365 EVRRVGRELGMP 376


>gi|225028631|ref|ZP_03717823.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353]
 gi|224954041|gb|EEG35250.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353]
          Length = 241

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 22/132 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VY 74
            ++ ++ V +SGG DS  +   L           L+ +   K      +   G D   + 
Sbjct: 21  KENDKIAVGISGGKDSLTLLYALS---------YLRNFYPHKFDIVAVTVDLGFDNLNLE 71

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           + R  C  + V + +       +  +               PC  C +  K   L    +
Sbjct: 72  EIREFCKKLGVEYQII------KTQIAEVVFQVRKES---NPCSLCAKMRK-GALNDAMK 121

Query: 135 QLGADVLATGHY 146
           +LG + +A  H+
Sbjct: 122 ELGCNKVAYAHH 133


>gi|73967746|ref|XP_860166.1| PREDICTED: similar to argininosuccinate synthetase isoform 4 [Canis
           familiaris]
          Length = 390

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|313112922|ref|ZP_07798568.1| PP-loop family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624827|gb|EFQ08136.1| PP-loop family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 259

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVV----AALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +V+V +SGG DS V      A L++  G+D  V  VTL      +   R       Q+++
Sbjct: 29  KVMVGVSGGKDS-VALTIGLAELRKYIGFDFTVQAVTL----DPQFGGRPMDYTVLQELF 83

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                    ++ + +       R   I P    Y   +   PC  C   ++   L +  +
Sbjct: 84  ------AQYDIPYEI-------RRTEIGPVVFDYRKEK--NPCALC-AKLRRGALHTAAQ 127

Query: 135 QLGADVLATGHYI 147
           +LG + +A GH++
Sbjct: 128 ELGCNKVALGHHL 140


>gi|290968939|ref|ZP_06560474.1| argininosuccinate synthase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780895|gb|EFD93488.1| argininosuccinate synthase [Megasphaera genomosp. type_1 str. 28L]
          Length = 409

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            K  ++V+A SGG+D+SV+   LK    G +VI V   +      +  +    A      
Sbjct: 2   KKIKKIVLAYSGGLDTSVIIPWLKENYAGAEVIAVCADVGQPDDFAAIEKKAYASG---- 57

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
           A +V        YV D ++ F  A + P           Y  G +        R +    
Sbjct: 58  ADKV--------YVADIKKEFMEAYVWPTIQAGAVYEGKYLLGTSFA------RPLISKK 103

Query: 129 LLSVTRQLGADVLATG 144
           L+ + +  GAD +A G
Sbjct: 104 LVEIAQAEGADAIAHG 119


>gi|260062415|ref|YP_003195495.1| GMP synthase [Robiginitalea biformata HTCC2501]
 gi|88783978|gb|EAR15149.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Robiginitalea biformata HTCC2501]
          Length = 509

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 32/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDS+V A LL R  G  +  + +     RK    +          D     
Sbjct: 214 KVILGLSGGVDSTVAAMLLHRAIGKHLHCIFVNNGLLRKNEFEE----VLHQYKD----- 264

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + ++    D   RF +A+             G   +   D         L+   + LG
Sbjct: 265 --MGLNIKGVDASARFLDALEGESDPEKKRKIIGRVFIEVFDDEAH-----LVEDAKWLG 317

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +            G     +                +          +  PL  + K
Sbjct: 318 QGTIYPDVIESVSATGGPSATIKSHHN------------VGGLPDFMKLKVVEPLKMLFK 365

Query: 198 ESVRDLAREMGLD 210
           + VR +   + + 
Sbjct: 366 DEVRRVGASLDIP 378


>gi|304373295|ref|YP_003856504.1| NH(3)-dependent NAD(+) synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309486|gb|ADM21966.1| NH(3)-dependent NAD(+) synthetase [Mycoplasma hyorhinis HUB-1]
 gi|330723831|gb|AEC46201.1| NH(3)-dependent NAD(+) synthetase [Mycoplasma hyorhinis MCLD]
          Length = 243

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 73/185 (39%), Gaps = 28/185 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+V +SGG+DS++VA L K+    D +G+ +++ +              +D+ D  ++  
Sbjct: 27  VIVGISGGIDSALVAVLAKKAFPNDSLGLVMKIKD------------MSKDLQDISKLVK 74

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++     +    +       F  +    E  +   +    ++ S L ++ ++    VL
Sbjct: 75  KFDIQTREINLSNIY-----ENFVDTLKL-EDKMSLANLQPRLRMSTLYAIAQEKNYLVL 128

Query: 142 ATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLF---ATTQQQLCDLRFP---LGD 194
            T + +   + Y    G     +   ++L + Q Y L       ++ L     P   L +
Sbjct: 129 GTDNLVEMYIGYFTKYGDGGVDLLPIVNLSKTQVYNLAKELGINEEILNKA--PSAGLWE 186

Query: 195 MKKES 199
            +K+ 
Sbjct: 187 NQKDE 191


>gi|283465283|gb|ADB23124.1| GMP synthase [Rhodopirellula baltica]
          Length = 303

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 150 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 181


>gi|283465234|gb|ADB23100.1| GMP synthase [Rhodopirellula sp. 8C]
          Length = 277

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 147 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 178


>gi|283465216|gb|ADB23092.1| GMP synthase [Rhodopirellula sp. 1S]
          Length = 306

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 182


>gi|317058226|ref|ZP_07922711.1| GMP synthase [Fusobacterium sp. 3_1_5R]
 gi|313683902|gb|EFS20737.1| GMP synthase [Fusobacterium sp. 3_1_5R]
          Length = 369

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 30/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSV A L+ R     IG  +T    ++    K +          +  
Sbjct: 72  DKKVILGLSGGVDSSVAATLIHRA----IGDQLTCIFVDTGLLRKNEAKTVMEVYSEN-- 125

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                +N+     D EERF + +                 +     +         ++  
Sbjct: 126 ---FHMNIKC--VDAEERFLSKLKGVSDPEQKRK------IIGKEFI--EVFNEEAKKFE 172

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A+ LA G  I   +      K   +  +           +    +     L  PL ++ 
Sbjct: 173 DAEFLAQG-TIYPDVIESVSVKGPSVTIKSHHN-------VGGLPEDMKFQLLEPLRELF 224

Query: 197 KESVRDLAREMGLD 210
           K+ VR++ R++G+ 
Sbjct: 225 KDEVREVGRQLGIP 238


>gi|301780780|ref|XP_002925806.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Ailuropoda
           melanoleuca]
          Length = 699

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 244 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 292

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 293 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 347

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 348 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 402

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 403 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 435


>gi|281343173|gb|EFB18757.1| hypothetical protein PANDA_015366 [Ailuropoda melanoleuca]
          Length = 784

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 329 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 377

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 378 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 432

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 433 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 487

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 488 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 520


>gi|303317558|ref|XP_003068781.1| argininosuccinate synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108462|gb|EER26636.1| argininosuccinate synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320038769|gb|EFW20704.1| argininosuccinate synthase [Coccidioides posadasii str. Silveira]
          Length = 421

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 27/131 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S + A L   G++V+                      +D  +A R   
Sbjct: 6   KVLLAYSGGLDTSCILAWLIEQGHEVVCF-------------LADVGQAEDFKEAERKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            I      V D +  F   +              Y  G +        R V    ++ V 
Sbjct: 53  AIGAKKLVVEDLKREFVEDLCFRAIQCNAIWEDRYLLGTSLA------RPVIARAMMRVA 106

Query: 134 RQLGADVLATG 144
           +Q G   ++ G
Sbjct: 107 KQEGCTAVSHG 117


>gi|206560424|ref|YP_002231188.1| GMP synthase [Burkholderia cenocepacia J2315]
 gi|226738400|sp|B4EC68|GUAA_BURCJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|198036465|emb|CAR52361.1| GMP synthase [glutamine-hydrolyzing] [Burkholderia cenocepacia
           J2315]
          Length = 539

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  ++F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASDQFL---------GHLAGVT---DPEAKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AKKLSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|194221748|ref|XP_001488278.2| PREDICTED: similar to GMPS protein [Equus caballus]
          Length = 1032

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 577 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 625

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 626 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 680

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 681 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 735

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 736 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 768


>gi|119962972|ref|YP_948566.1| GMP synthase [Arthrobacter aurescens TC1]
 gi|119949831|gb|ABM08742.1| GMP synthase (Glutamine amidotransferase) [Arthrobacter aurescens
           TC1]
          Length = 529

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 41/203 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+  +SGGVDS+V AAL++R  G  +  V     +     + +              
Sbjct: 224 DSKVICGLSGGVDSAVAAALVQRAVGDQLTCVF---VDHGLLREGEAEQVERDF------ 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T  V+ YV + +ERF++A          AG   +   +  R +             R
Sbjct: 275 VAAT-GVNLYVANEQERFQSA---------LAG---VSDPETKRKIIGREFIRAFEEAER 321

Query: 135 QLGADVLATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            + A   A G  I+  +        V   G       +           +    +    +
Sbjct: 322 AIIAQAAAEGEKIKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLQFE 374

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  ++GL 
Sbjct: 375 LVEPLRALFKDEVRAVGAQLGLP 397


>gi|113953741|ref|YP_729683.1| PP-loop family protein [Synechococcus sp. CC9311]
 gi|113881092|gb|ABI46050.1| PP-loop family protein [Synechococcus sp. CC9311]
          Length = 275

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 72/223 (32%), Gaps = 57/223 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              +V VA SGGVDSS+VAA+     G   + +T                 A   + +AR
Sbjct: 25  SQQQVCVAYSGGVDSSLVAAIAHEQLGEQALAIT-----------GVSPSLAPHLLLEAR 73

Query: 78  RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVT 133
           +    + + H  V   E    +              T  P   C  C R +    L  + 
Sbjct: 74  QQAAWLGMRHQEVLTLELEDPDY-------------TSNPQDRCYACKREL-HRHLAPIA 119

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +      A G  +   +   D G  R  +    +                   +R PL 
Sbjct: 120 AE------ANGALVLDGVNQDDLGDHRPGIAAAKEAG-----------------VRSPLA 156

Query: 194 D--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           +  + K +VR L+  +G    DK      C   +  Y D + R
Sbjct: 157 ELGITKATVRRLSWALGFPWWDKP--AQPCLASRFPYGDSISR 197


>gi|109048628|ref|XP_001105046.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 1 [Macaca
           mulatta]
 gi|297286583|ref|XP_002803006.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 2 [Macaca
           mulatta]
          Length = 693

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 429


>gi|73990462|ref|XP_866454.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 7
           [Canis familiaris]
          Length = 700

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 245 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 293

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 294 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 348

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 349 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 403

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 404 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 436


>gi|73990454|ref|XP_866405.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 3
           [Canis familiaris]
          Length = 727

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 245 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 293

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 294 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 348

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 349 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 403

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 404 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 436


>gi|73990456|ref|XP_866417.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 4
           [Canis familiaris]
          Length = 724

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 243 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 291

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 292 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 346

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 347 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 401

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 402 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 434


>gi|57103704|ref|XP_534316.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 1
           [Canis familiaris]
 gi|73990451|ref|XP_852817.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 2
           [Canis familiaris]
          Length = 698

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 243 KVLVLLSGGVDSTVCTALLNRALSQDQ---VIAVHIDN--------GFMRKRESQSVEEA 291

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 292 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 346

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 347 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 401

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+GL 
Sbjct: 402 LIRKLREE--GKVIEPLKDFHKDEVRILGRELGLP 434


>gi|89898235|ref|YP_515345.1| GMP synthase [Chlamydophila felis Fe/C-56]
 gi|123735915|sp|Q254T8|GUAA_CHLFF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|89331607|dbj|BAE81200.1| GMP synthase [Chlamydophila felis Fe/C-56]
          Length = 512

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 52/205 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV++ +SGGVDSSV+A LL             L +               +V + ++
Sbjct: 216 EKERVLLGLSGGVDSSVLAVLLHNA----------LGDRLSCVFVDTGLLRKNEVEEVKQ 265

Query: 79  VCDTINVSHYVFDYEERF------------RNAVIVPFASSYAAGETPL-PCVDCNRTVK 125
              ++ +   V D  E F            +  +I           +         +   
Sbjct: 266 QFLSLGLEIIVEDASETFFYELSGIQDPEQKRKIIGSTFIEVFDKVSKNLEVQWLAQGTI 325

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +SD++   +   A  +   H+                              +    ++  
Sbjct: 326 YSDVIESAKSCDATQVIKSHHN-----------------------------VGGLPEKLN 356

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL  + K+ VR L + +GL 
Sbjct: 357 LKLLEPLRFLFKDEVRALGKVLGLP 381


>gi|88855466|ref|ZP_01130130.1| argininosuccinate synthase [marine actinobacterium PHSC20C1]
 gi|88815373|gb|EAR25231.1| argininosuccinate synthase [marine actinobacterium PHSC20C1]
          Length = 399

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    LK   G +V+ +                   G+++ D R+  
Sbjct: 4   RVVLAYSGGLDTSVGIGWLKDATGKEVVAL------------AIDVGQGGENMDDIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F +  ++P   + A  +   P V   +R V    L    + LGA
Sbjct: 52  LDCGAVESIVIDAKDEFADDFLMPALKANALYQKRYPLVSALSRPVISRHLALTAKALGA 111

Query: 139 DVLATG 144
           D +A G
Sbjct: 112 DSVAHG 117


>gi|283465291|gb|ADB23128.1| GMP synthase [Rhodopirellula sp. SWK21]
          Length = 294

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 182


>gi|283465281|gb|ADB23123.1| GMP synthase [Rhodopirellula baltica]
          Length = 288

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           + K   D RV+  +SGGVDSSVVAALL    Y  IG
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALL----YKAIG 182


>gi|259047787|ref|ZP_05738188.1| GMP synthase [Granulicatella adiacens ATCC 49175]
 gi|259035464|gb|EEW36719.1| GMP synthase [Granulicatella adiacens ATCC 49175]
          Length = 517

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 30/210 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKA 60
           +     +    + +     +V++ +SGGVDSSVV  LL++   D  +I +     +    
Sbjct: 205 MDSFIEMEIAKIREKVGHKKVLLGLSGGVDSSVVGVLLQKA-IDDQLICIF---VDHGLL 260

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    + +ERF + +                 V  
Sbjct: 261 RKGEGDQVMES-------LSGKFGLNIIRVNAQERFLSKLKGVSDPEQKRKIIGNEFVYV 313

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D     +    D LA G        + + G +     +           +   
Sbjct: 314 -----FDD--EAAKLTDVDFLAQG---TLYTDIIESGTKTAQTIKSHHN-------VGGL 356

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L   +G+ 
Sbjct: 357 PEDMQFELIEPLNTLFKDEVRALGTALGMP 386


>gi|315149756|gb|EFT93772.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX0012]
          Length = 278

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ +   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAI---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQAKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|300814739|ref|ZP_07094987.1| PP-loop family protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511126|gb|EFK38378.1| PP-loop family protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 276

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 22/130 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           ++ VA+SGG DS  +A L++          L+ +     S    +   G    ++  +  
Sbjct: 44  KIAVAISGGKDSLTLAKLMQE---------LKKHRQVDFSLEFIAMDPGYIKENSDNLLY 94

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  + +        + +++ +    A     G++  PC  C   ++  +L S  ++LG 
Sbjct: 95  NCKKLGIP------VKLYKSDIFE-VAEKLTNGDS--PCYMC-ARMRRGNLYSKAKELGC 144

Query: 139 DVLATGHYIR 148
           + LA GH+  
Sbjct: 145 NKLALGHHFN 154


>gi|77386124|gb|ABA77541.1| putative transcriptional regulatory protein [Campylobacter jejuni]
          Length = 224

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 78/203 (38%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++    ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEPRTQEKERECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKF-----SDLLSV- 132
             + V   Y+ D    F   +     +  +        C+     + +        LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCISDTPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVYIK 162

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL  + K  + +LA +  + + 
Sbjct: 163 TPLVRLNKAKIVELALKENVPLE 185


>gi|311246646|ref|XP_003122283.1| PREDICTED: argininosuccinate synthase-like [Sus scrofa]
          Length = 412

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P   S A  E           PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|257387449|ref|YP_003177222.1| GMP synthase subunit B [Halomicrobium mukohataei DSM 12286]
 gi|257169756|gb|ACV47515.1| GMP synthase, large subunit [Halomicrobium mukohataei DSM 12286]
          Length = 305

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 42/192 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A+SGGVDSS  AAL     Y+ IG  L          RKG     ++ +D        
Sbjct: 25  VIALSGGVDSSTAAALA----YEAIGDQLTPVYVDTGLMRKGETDEIRETFDYMD----- 75

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQLGAD 139
             S  + D  +RF +A           GET     +  R +       +  +V + + AD
Sbjct: 76  --SLRIVDATDRFLDA---------LEGET---DPEEKRHIIGEQFIREFETVAKDVDAD 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            L  G     R+      K                  +    +      +  P+ D+ K+
Sbjct: 122 YLVQGTIYPDRIESEGTIKSHHN--------------VGGLPEVVDFEGIVEPMRDLYKD 167

Query: 199 SVRDLAREMGLD 210
            VR++AR + L+
Sbjct: 168 EVREVARALDLE 179


>gi|167950640|ref|ZP_02537714.1| exsB protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 213

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R VV +SGG+DS+ V A+ ++ G++   +++ LY  R             ++  AR+V 
Sbjct: 5  KRAVVLLSGGLDSATVLAMARQQGFECHALSM-LYGQR----------HAAELDAARQVA 53

Query: 81 DTIN-VSHYVFD 91
            +  V H + +
Sbjct: 54 QALGAVDHKLIN 65


>gi|116754741|ref|YP_843859.1| argininosuccinate synthase [Methanosaeta thermophila PT]
 gi|116666192|gb|ABK15219.1| argininosuccinate synthase [Methanosaeta thermophila PT]
          Length = 394

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 34/195 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +A SGG+D+SV   LL+       G  ++    R  +         +D+    R  + 
Sbjct: 7   VALAYSGGLDTSVCIPLLRERY----G--MK----RVVTVLVDVGQPPEDIERGNRRAEK 56

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           ++  HY+ D ++ F    I P   +  + E  +      R +    ++ V R+LG + LA
Sbjct: 57  LSDEHYIIDAKDEFVRDYIFPLIKANGSYEGYVLGTAIARPLIARKVVDVARKLGINALA 116

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G   R     G+D  R   + R   +                  +  P+ D+      +
Sbjct: 117 HGCTGR-----GNDQLRFEAVFRATGM-----------------RVIAPMRDLDLSREWE 154

Query: 203 L--AREMGLDIADKS 215
           +  ARE G+D+    
Sbjct: 155 IDYAREHGIDVQVSK 169


>gi|326479673|gb|EGE03683.1| argininosuccinate synthase [Trichophyton equinum CBS 127.97]
          Length = 415

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V++A SGG+D+S + A L   G++V+                      +D  +A R
Sbjct: 3   QKEKVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAER 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               +      V D ++ F   +        A  E     +   R V    ++ V +Q G
Sbjct: 50  KALAVGAKKLVVEDLKKEFVEDLCFKAIQCNAIWEDRY--LLGARPVIARAMMRVAQQEG 107

Query: 138 ADVLATG 144
              ++ G
Sbjct: 108 CTAVSHG 114


>gi|327308140|ref|XP_003238761.1| argininosuccinate synthetase [Trichophyton rubrum CBS 118892]
 gi|326459017|gb|EGD84470.1| argininosuccinate synthetase [Trichophyton rubrum CBS 118892]
          Length = 415

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V++A SGG+D+S + A L   G++V+                      +D  +A R
Sbjct: 3   QKEKVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAER 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               +      V D ++ F   +        A  E     +   R V    ++ V +Q G
Sbjct: 50  KALAVGAKKLVVEDLKKEFVEDLCFKAIQCNAIWEDRY--LLGARPVIARAMMRVAQQEG 107

Query: 138 ADVLATG 144
              ++ G
Sbjct: 108 CTAVSHG 114


>gi|303244362|ref|ZP_07330698.1| Queuosine synthesis-like protein [Methanothermococcus okinawensis
           IH1]
 gi|302485257|gb|EFL48185.1| Queuosine synthesis-like protein [Methanothermococcus okinawensis
           IH1]
          Length = 256

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 24/141 (17%)

Query: 12  LDLDKN--PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           LD+ KN   K  + +VA SGGVDS V ++++ +          ++++    +        
Sbjct: 48  LDISKNDKLKKPKALVAFSGGVDS-VASSIIAK----------KIFDITAITAYSPIIMR 96

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFSD 128
             +  +   +   +N+ H   D      N V     +  Y       PC  C++ +    
Sbjct: 97  PDNKKNISELAKKLNIKHEFVDI---DLNEVQKDTLNGKYH------PCGRCHK-IIEKA 146

Query: 129 LLSVTRQLGADVLATGHYIRS 149
           +LS  ++     +  G  +  
Sbjct: 147 VLSYAKENDIKYIIYGDMLSV 167


>gi|295111270|emb|CBL28020.1| conserved hypothetical protein TIGR00268 [Synergistetes bacterium
           SGP1]
          Length = 299

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 68/211 (32%), Gaps = 48/211 (22%)

Query: 23  VVVAMSGGVDS-SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V V +SGGVDS  + A   +  G   + VT+           +    +  +  DA R+  
Sbjct: 27  VAVMLSGGVDSALLAALAHEALGRHAVAVTI-----------ESPLLSADERADAGRLAA 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            + + H V             P      AG    P   C+  + ++   ++    + G  
Sbjct: 76  QVGIRHKVL------------PMDELEDAGFVANPRDRCHLCKRMRLEAVVRWAAERGIP 123

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G          D G  R  M   M+    +S  L A               M K  
Sbjct: 124 WVLDG------ANADDRGDYRPGMKALMEFGSVRSPLLEA--------------GMTKAE 163

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
           VR  AR MGL   +K      C   +  Y +
Sbjct: 164 VRAAARAMGLFTWNKPAR--ACLASRIPYGE 192


>gi|14602074|ref|NP_148620.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Aeropyrum pernix K1]
 gi|13627227|sp|Q9Y933|GUAA_AERPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|5106156|dbj|BAA81467.1| GMP synthase [glutamine-hydrolyzing] [Aeropyrum pernix K1]
          Length = 512

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 63/190 (33%), Gaps = 33/190 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V A+SGGVDS+V A + K+     IG   +LY                +V    ++   +
Sbjct: 222 VAAVSGGVDSTVAALIAKKA----IGS--RLYP----VFIDHGLHPEGEVERVVKLLSRL 271

Query: 84  NVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            +   + D  E F      V  P       G                 L    R +GA+ 
Sbjct: 272 GLEPVMVDAGEEFLAALEGVGDPEEKRRVVGRVYAEV-----------LERAARDIGAEY 320

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G        V + G R        D  +   + +    +     L  PL    K+ V
Sbjct: 321 LVQG---TIYPDVIESGARP-----GADTIKTH-HNVGGLPKDMRLKLVEPLRYFYKDEV 371

Query: 201 RDLAREMGLD 210
           R LA ++G+ 
Sbjct: 372 RLLAEKLGVP 381


>gi|325281423|ref|YP_004253965.1| Argininosuccinate synthase [Odoribacter splanchnicus DSM 20712]
 gi|324313232|gb|ADY33785.1| Argininosuccinate synthase [Odoribacter splanchnicus DSM 20712]
          Length = 395

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S     L  + G +V      L N+   ++ +        +    +  
Sbjct: 4   KVVLAYSGGLDTSYCVKYLSEELGLEV---YTALANTGGFTEAE--------LKTVEKKA 52

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQLG 137
             +    +V  D  E +    I              P    +    F  L  ++  +++G
Sbjct: 53  YALGAKEHVNLDVTEDYYEKCIRYMVFGNVLRNKTYPVSVSSERT-FQALAIVNYAKKVG 111

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 112 AQYIAHG 118


>gi|325964061|ref|YP_004241967.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470148|gb|ADX73833.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 516

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K   D RV+  +SGGVDS+V AAL++R  G  +  V     +     + +        
Sbjct: 205 IRKQIGDARVICGLSGGVDSAVAAALVQRAVGDQLTCVF---VDHGLLREGEAEQVERDF 261

Query: 73  VYDARRVCDTINVSHYVFDYEERF 96
                 V  T  V  YV + +ERF
Sbjct: 262 ------VAAT-GVKLYVANEQERF 278


>gi|228470511|ref|ZP_04055378.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3]
 gi|228307807|gb|EEK16763.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3]
          Length = 494

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 23/127 (18%)

Query: 23  VVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++A+SGG DS   A L  L   GY  +      +     S R        D      +C
Sbjct: 34  VIIALSGGADS--TALLWGLSLLGYRCVAAHCNFHLRDDESDR--------DEAFVTELC 83

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + V      +               Y A    +      R +++     +  +  A  
Sbjct: 84  AQLGVPLERASF-----------DTYGYVATHQGVSVEMAARELRYHFFDELYERYDAQC 132

Query: 141 LATGHYI 147
           +A GH++
Sbjct: 133 IALGHHL 139


>gi|303288041|ref|XP_003063309.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455141|gb|EEH52445.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 405

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 78/221 (35%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR   +
Sbjct: 4   VVLAYSGGLDTSIILKWLQDTYGCEVVTFT-------------ADLGQGEELEPARAKAE 50

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R +       + 
Sbjct: 51  QMGVKEIYIDDLREEFVRDYVFPMFRANAVYEGEYLLGTSIARPLIAKRQI------EIA 104

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R++GAD +  G                           DQ+             +RF LG
Sbjct: 105 REVGADAVCHG---------------------ATGKGNDQA-----------RSVRFELG 132

Query: 194 DM-KKESVR-----------------DLAREMGLDIADKSD 216
               K  V+                   A E G+ +A    
Sbjct: 133 YYGLKPDVKVIAPWREWDLNSRTKLIAYAEEAGIPVAQSKR 173


>gi|20095126|ref|NP_614973.1| ATPase [Methanopyrus kandleri AV19]
 gi|19888424|gb|AAM02903.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 294

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 66/224 (29%), Gaps = 50/224 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGG+DS     L  R   +V+ +T                 A + +  ARR+  
Sbjct: 53  KVLVAVSGGLDSLAALGLALRICDEVVALT--------VDTGALHPEAWRRIILARRMS- 103

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +   +   ++ F                   PC  C+R +         R+LG D +
Sbjct: 104 --GIEWEIIGDQKPFLK------LFEERLTRAESPCGPCSRMI-TRRYERRARELGVDAI 154

Query: 142 ATGHYI--RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            TGH +   +   V  D    R MC                              M +  
Sbjct: 155 VTGHELPHGTSPVVPKDPPVIRAMC-----------------------------GMTENE 185

Query: 200 VRDLA-REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            R++   E GL +   S     C V          +        
Sbjct: 186 RREIVEEEFGLTVDKISGYTSNCIVLPFALKLFYMKYGYSFEAP 229


>gi|262306039|gb|ACY45612.1| gln amidotransferase [Eremocosta gigasella]
          Length = 196

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQ 71
           + +   + +V++ +SGGVDS+V AALL +   D  VI   +     RK   ++       
Sbjct: 37  IRRTIGNNKVLMLISGGVDSTVCAALLHKALKDDQVIAFHIDNGFMRKDESKQVEVSLS- 95

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRN 98
                      + +   V +   +F N
Sbjct: 96  ----------KLGLKLKVINASHQFYN 112


>gi|26987824|ref|NP_743249.1| argininosuccinate synthase [Pseudomonas putida KT2440]
 gi|104780418|ref|YP_606916.1| argininosuccinate synthase [Pseudomonas entomophila L48]
 gi|148546372|ref|YP_001266474.1| argininosuccinate synthase [Pseudomonas putida F1]
 gi|30172776|sp|P59604|ASSY_PSEPK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166221008|sp|Q1IE03|ASSY_PSEE4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166221010|sp|A5VZI0|ASSY_PSEP1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|24982523|gb|AAN66713.1|AE016299_9 argininosuccinate synthase [Pseudomonas putida KT2440]
 gi|95109405|emb|CAK14105.1| putative argininosuccinate synthase [Pseudomonas entomophila L48]
 gi|148510430|gb|ABQ77290.1| argininosuccinate synthase [Pseudomonas putida F1]
 gi|313497454|gb|ADR58820.1| ArgG [Pseudomonas putida BIRD-1]
          Length = 405

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QAMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|229817822|ref|ZP_04448104.1| hypothetical protein BIFANG_03102 [Bifidobacterium angulatum DSM
           20098]
 gi|229785611|gb|EEP21725.1| hypothetical protein BIFANG_03102 [Bifidobacterium angulatum DSM
           20098]
          Length = 520

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 64/206 (31%), Gaps = 53/206 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVC 80
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG       D   A    
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEAEQVKHDFVKAT--- 269

Query: 81  DTINVSHYVFDYEERF------------RNAVI-VPFASSYAAG--ETPLPCVDCNRTVK 125
               +     D  E F            +  +I   F  ++     +         + VK
Sbjct: 270 ---GIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGASGKEVK 326

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDG-KRRRIMCRPMDLERDQSYFLFATTQQQ 184
           F             ++    Y       G DG    +       L +D         + Q
Sbjct: 327 F-------------LVQGTLYPDVVESGGGDGAANIKSHHNVGGLPKD--------IKFQ 365

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
           L     PL  + K+ VR +  E+GL 
Sbjct: 366 L---IEPLRTLFKDEVRAIGTELGLP 388


>gi|160872414|ref|ZP_02062546.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) (gmps) [Rickettsiella grylli]
 gi|159121213|gb|EDP46551.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) (gmps) [Rickettsiella grylli]
          Length = 523

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 41/207 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGS 66
           ++  N    +V++A+SGGVDS+V+AALL +  G  ++ V      L++ +          
Sbjct: 218 EIRTNVGKEKVLLALSGGVDSTVLAALLHKAIGKQLLCVFVNTGLLRITDKDST------ 271

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRT 123
                     + + D + +S    D   RF N +             G   +   +    
Sbjct: 272 ---------IQALADDMQISVVKIDASLRFINTLKGITDPEEKRKAIGNLFVEIFES--- 319

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
                    ++      LA G      +       ++    +           +      
Sbjct: 320 -------EASKHKDIAWLAQGTIYSDVIESAGTITQKAHAIKSHHN-------VGGLPDT 365

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
               L  PL ++ K+ V +L  E+GL 
Sbjct: 366 LKLKLLEPLRELFKDEVCELGIELGLP 392


>gi|325275197|ref|ZP_08141164.1| argininosuccinate synthase [Pseudomonas sp. TJI-51]
 gi|324099684|gb|EGB97563.1| argininosuccinate synthase [Pseudomonas sp. TJI-51]
          Length = 405

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QAMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|303247671|ref|ZP_07333941.1| N-acetyl sugar amidotransferase [Desulfovibrio fructosovorans JJ]
 gi|302490943|gb|EFL50840.1| N-acetyl sugar amidotransferase [Desulfovibrio fructosovorans JJ]
          Length = 389

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 22/139 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGGVDS+         G   + V     ++S  A           ++ +A R    
Sbjct: 70  VVGVSGGVDSTYTLFKAVSLGLRPLAVHFDNGWDSEIAV---------HNIENATR---R 117

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + V    +V D+ + FR   I    +S +  E P      +  +  + LL    + G   
Sbjct: 118 LGVELYTHVVDW-DDFRRLQISFLKASTSDAEIP-----TDMAIS-AVLLQSAARDGLRY 170

Query: 141 LATGHYIRSRLYVGDDGKR 159
           + +GH  R+   V  D   
Sbjct: 171 VLSGHSFRTEGIVPRDWTY 189


>gi|293390362|ref|ZP_06634696.1| GMP synthase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950896|gb|EFE01015.1| GMP synthase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 519

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA LL R  G ++  V      L+L    +  +  G        
Sbjct: 221 DDEVILGLSGGVDSSVVALLLHRAIGKNLHCVFVDNGLLRLNEGVQVMEMFG-------- 272

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +  +++    D E RF +           AG   +   +  R +     + V 
Sbjct: 273 -------NKFDLNITRVDAESRFLSE---------LAG---VSDPEAKRKIIGKVFVDVF 313

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                       LA G      +        +  + +           +          L
Sbjct: 314 DDESKKLTNVKWLAQGTIYPDVIESAAGKTGKAHVIKSHHN-------VGGLPDYMKLGL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +   +GL 
Sbjct: 367 VEPLRELFKDEVRKIGLALGLP 388


>gi|58584700|ref|YP_198273.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75497846|sp|Q5GSJ3|GUAA_WOLTR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58419016|gb|AAW71031.1| GMP synthase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 520

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV  AL     Y  +G  L          RK            + +
Sbjct: 220 EKKVIAAVSGGVDSSVAVALT----YKAVGKQLNCIFIDTGLLRKN-----------QTI 264

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
                +     D    F + +                 +  N  +         +++G A
Sbjct: 265 ALLEEIPVNYVDKSNLFLSRLKGITDPEEKRK------IIGNTFI--EVFEEEAKKIGNA 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G        +    +        +    ++    L  PL  + K+
Sbjct: 317 DFLMQGTIYSDVVESGHASGNASTIKSHHN--------VGGLPEKMNLKLVEPLRYLFKD 368

Query: 199 SVRDLAREMGLDIA 212
            VR L +E+GL   
Sbjct: 369 EVRLLGKEIGLSNE 382


>gi|302392283|ref|YP_003828103.1| argininosuccinate synthase [Acetohalobium arabaticum DSM 5501]
 gi|302204360|gb|ADL13038.1| argininosuccinate synthase [Acetohalobium arabaticum DSM 5501]
          Length = 402

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L+   YD            +           +D+   +    
Sbjct: 8   KIVLAYSGGLDTSVAVKWLQDK-YD-----------AEVVAFAADVGQNEDLEPVKEKAL 55

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               +  YV D +E F          + A  E   P     +R +    ++ V +Q GAD
Sbjct: 56  ETGAIKAYVEDLKEEFLTDYAFKGLKAGAKYEAKYPLATAYSRPLIAKKMIEVAKQEGAD 115

Query: 140 VLATG 144
            +A G
Sbjct: 116 AVAHG 120


>gi|301318270|gb|ADK67050.1| GMP synthase [Stenotrophomonas rhizophila]
 gi|301318304|gb|ADK67067.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +  +R+ + 
Sbjct: 86  -AEHMGVKVIRVNAADRYFSK 105


>gi|195978133|ref|YP_002123377.1| GMP synthase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974838|gb|ACG62364.1| GMP synthase [glutamine-hydrolyzing] GuaA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 515

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 40/215 (18%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL++     IG  +T    +    
Sbjct: 203 MDNFIDMQIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQKA----IGDQLTCIFVDHGLL 258

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            K +G             +     ++    D  +RF +           AG   +   + 
Sbjct: 259 RKNEGDQVME-------MLGGRFGLNIIRVDASKRFLD---------LLAG---VEDPEK 299

Query: 121 NRTVKFSDLL-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
            R +  ++ +       ++  G D LA G        + + G       +          
Sbjct: 300 KRKIIGNEFVYVFDDEASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN------ 350

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +    +L  PL  + K+ VR L   +G+ 
Sbjct: 351 -VGGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 384


>gi|163745096|ref|ZP_02152456.1| argininosuccinate synthase [Oceanibulbus indolifex HEL-45]
 gi|161381914|gb|EDQ06323.1| argininosuccinate synthase [Oceanibulbus indolifex HEL-45]
          Length = 408

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINV---SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +   + Y+ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAEMMGIAPENIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  + GAD +A G
Sbjct: 105 LVEIAEETGADAVAHG 120


>gi|160915475|ref|ZP_02077686.1| hypothetical protein EUBDOL_01483 [Eubacterium dolichum DSM 3991]
 gi|158432595|gb|EDP10884.1| hypothetical protein EUBDOL_01483 [Eubacterium dolichum DSM 3991]
          Length = 563

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 52/217 (23%)

Query: 3   VSEATRLNSLDLDKNPKDMRV--VVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSR 58
           + +A  L   + DK   + ++  ++ +SGG+DSSV  ALL    G   V G  +    +R
Sbjct: 243 LLDALTLGIREFDKQIFNAKMPWIIGLSGGLDSSVSCALLAYALGAKRVHGFNMATKYNR 302

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHY------VFDYEERFRNAVIVPFASSYA-AG 111
             +           + +A++    + + ++      + D            F   Y    
Sbjct: 303 DTT-----------ISNAQKEAAALGIHYHDGSIQMLVDASR-------DTFLKEYGFDA 344

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
           +     V  N            R  G   L  G        + ++G +   M        
Sbjct: 345 QKDSTLVMENIQ---------ARARG--YLLGGFAGILGGVIANNGNKVEYML-GYCTLY 392

Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208
             S    +            +GD+ K  +  LA E+ 
Sbjct: 393 GDSVGALSL-----------IGDLTKVQLFALAEELN 418


>gi|116492215|ref|YP_803950.1| GMP synthase [Pediococcus pentosaceus ATCC 25745]
 gi|122266321|sp|Q03H14|GUAA_PEDPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116102365|gb|ABJ67508.1| GMP synthase (glutamine-hydrolyzing) [Pediococcus pentosaceus ATCC
           25745]
          Length = 517

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL +  G  ++ +            RKG          A++
Sbjct: 222 DRKVLLGLSGGVDSSVVGVLLNKAIGDQLVCIF-----VDHGLLRKGE---------AKQ 267

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V D++     ++    D ++RF + +                 +  N  ++        +
Sbjct: 268 VMDSLEGKFGLNIIKVDAQDRFLSKLAGVSEPEQKRK------IIGNEFIQV--FNDEAQ 319

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G D LA G      +  G D  +     +           +    +    +L  PL 
Sbjct: 320 KLKGIDFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMHFELIEPLR 369

Query: 194 DMKKESVRDLAREMGLD 210
            + K+  RDL  ++G+ 
Sbjct: 370 TLFKDEARDLGEKLGMP 386


>gi|83814385|ref|YP_446181.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salinibacter ruber DSM 13855]
 gi|294508107|ref|YP_003572165.1| GMP synthase [glutamine-hydrolyzing] [Salinibacter ruber M8]
 gi|123528343|sp|Q2S0V0|GUAA_SALRD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83755779|gb|ABC43892.1| glutamine-hydrolyzing GMP synthase [Salinibacter ruber DSM 13855]
 gi|294344435|emb|CBH25213.1| GMP synthase [glutamine-hydrolyzing] [Salinibacter ruber M8]
          Length = 526

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           D  V++ +SGGVDSSV AALL+R 
Sbjct: 224 DRHVILGLSGGVDSSVAAALLQRA 247


>gi|150388741|ref|YP_001318790.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Alkaliphilus metalliredigens QYMF]
 gi|259647754|sp|A6TLR3|GUAA_ALKMQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149948603|gb|ABR47131.1| GMP synthase, large subunit [Alkaliphilus metalliredigens QYMF]
          Length = 510

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+ +  G ++  V     +     K +G       V D  R
Sbjct: 215 DRKVLCALSGGVDSSVAAVLVHQAIGDNLTCVF---VDHGLLRKDEGDW-----VEDIFR 266

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +   ++    + EERF      V  P     A GE                     ++
Sbjct: 267 --NQFEMNFIRVNAEERFLGKLKGVTDPELKRKAIGELF-----------IRVFEEEAQK 313

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +G  D L  G        + + G     + +           +    +     L  P   
Sbjct: 314 IGDFDFLVQG---TLYPDIIESGTETAAVIKSHHN-------VGGLPEDMKFQLIEPFKF 363

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+G+ 
Sbjct: 364 LFKDEVRIAGLELGVP 379


>gi|229496306|ref|ZP_04390026.1| GMP synthase [Porphyromonas endodontalis ATCC 35406]
 gi|229316884|gb|EEN82797.1| GMP synthase [Porphyromonas endodontalis ATCC 35406]
          Length = 506

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 51/238 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +  ++ +V++A+SGGVDSSVVA LL +  G ++  + +         ++  +    Q
Sbjct: 205 ELREQLQNDKVLLALSGGVDSSVVAVLLNKAIGRNLTCIFV----DHGLLRKDEATQVMQ 260

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCV 118
           D       C  + ++    D  E+F NA   V  P          F   + A    +  V
Sbjct: 261 DYR-----C--LGLNVIGVDAHEQFYNALAGVTDPEQKRKIIGKGFIDVFEAEAAKIKDV 313

Query: 119 DC-NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL----ERDQ 173
               +   + D++            TG  I+S   VG  G   R+  + ++      +D+
Sbjct: 314 KWLGQGTIYPDVIESIN-------ITGMVIKSHHNVG--GLPERMKLKLVEPIRALFKDE 364

Query: 174 SYFLFA---TTQQQLCDLRFP--------LGDMKKESVRDLAREMGLDIADKSDSQDI 220
              +          L    FP        LG++  E VR + +E      ++   Q +
Sbjct: 365 VRRVGRALGMQDHLLERHPFPGPGLGIRILGEITPEKVR-ILQEADAIYMNEMRRQGL 421


>gi|228470931|ref|ZP_04055776.1| GMP synthase [Porphyromonas uenonis 60-3]
 gi|228307328|gb|EEK16342.1| GMP synthase [Porphyromonas uenonis 60-3]
          Length = 506

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 66/202 (32%), Gaps = 49/202 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++A+SGGVDSSV A LL R  G  +  +      ++L  +             Q + D 
Sbjct: 215 VIMALSGGVDSSVAAVLLHRAIGDQLTCIFVDHGLMRLGEAE------------QILADY 262

Query: 77  RRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +     + +     D   +F +    V  P A     G   +   +       +  L   
Sbjct: 263 KA----LGLGCIKVDASAKFLDDLAGVRDPEAKRKVIGRDFIEVFEA-----EAKKLPQA 313

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           R LG   +     I S    G   K                  +    ++    L  PL 
Sbjct: 314 RWLGQGTI-YPDIIESINITGKVIKSHHN--------------VGGLPERMHLKLVEPLK 358

Query: 194 DMKKESVRDLAREMGLDIADKS 215
            + K+ VR +    GL +A   
Sbjct: 359 HLFKDEVRRV----GLALAMPR 376


>gi|218961203|ref|YP_001740978.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729860|emb|CAO80772.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 511

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 68/214 (31%), Gaps = 50/214 (23%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           N   + K   + +V++ +SGGVDSSV A LL    Y  IG                    
Sbjct: 204 NIEKIRKQVGNQKVLLGLSGGVDSSVTAVLL----YKTIG---------NQLLPIFVDTG 250

Query: 70  GQDVYDARRVCDT------INVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDC 120
                +A RV  T      +N+ +   D  + F + +             G T +   + 
Sbjct: 251 LMRYKEAERVKQTFSAYPDLNIRY--VDASKTFISKLKGITDPETKRKIIGNTFIEVFE- 307

Query: 121 NRTVKFSDLLSVTRQLGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
               K +             LA        I S  + G   K +         E+     
Sbjct: 308 ----KIAGEYEE-----VHFLAQGTLYPDVIESATFTGMTAKIKSHHNVGGLPEKMN--- 355

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                   L  L  PL ++ K+ VR++   +GL 
Sbjct: 356 --------LA-LIEPLRELFKDEVREVGTLLGLP 380


>gi|45358224|ref|NP_987781.1| putative ATP binding-like protein [Methanococcus maripaludis S2]
 gi|44920981|emb|CAF30217.1| Putative ATP binding related protein [Methanococcus maripaludis S2]
          Length = 291

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 39/176 (22%)

Query: 9   LNSLDLDKNPKDMR--V----------------VVAMSGGVDSSVVAALL-KRDGYDVIG 49
           LN+L   +N ++M+  V                ++  SGG DS V   LL K      + 
Sbjct: 37  LNALKFPRNFEEMKNEVMDYLDELRIRNNKYNCILGFSGGKDSVVALYLLVKELRIRPLC 96

Query: 50  VTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA 109
           VT+                A + + + + V     V   V +            F  + +
Sbjct: 97  VTVDN-----------GYLAEEALTNCKNVAKYFGVDWLVIN------KDFTKFFKETIS 139

Query: 110 AGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
            GE+  PC  C+  +   +L    RQ   D + TGH +          K+   M R
Sbjct: 140 KGES--PCRVCS-DMNMHELWQFARQTNIDTIVTGHELPFGTTAIRGMKKGINMLR 192


>gi|262306051|gb|ACY45618.1| gln amidotransferase [Hadrurus arizonensis]
          Length = 196

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + RV++ +SGGVDS+V AALL +   +  VI + +     RK    +             
Sbjct: 43  NNRVLMLVSGGVDSTVCAALLHKALKEDQVIAIHIDNGFMRKNESVQVEQSL-------- 94

Query: 78  RVCDTINVSHYVFDYEERFRN 98
                + +   V +    F +
Sbjct: 95  ---RKLGLKLQVINASHHFYD 112


>gi|227872194|ref|ZP_03990561.1| GMP synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841977|gb|EEJ52240.1| GMP synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
          Length = 513

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 37/196 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGGVDSSV A LL R  G  +  V     +     K +G            +V 
Sbjct: 217 KVLLALSGGVDSSVAAGLLSRAIGKQLYCVF---VDHGLLRKNEGD-----------QVE 262

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           +         D+E  F   V V     Y      +   +  R +              ++
Sbjct: 263 EIFG---EKGDFELNF---VRVNAGEEYFEKLAGVEDPEKKRKIIGEQFIRIFEREANKI 316

Query: 137 G-ADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  D LA G  Y          G   +       L ++ S+           ++  PL  
Sbjct: 317 GTVDFLAQGTIYADVVESGLGKGAVIKSHHNVGGLPKNISF----------KEIVEPLRL 366

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 367 LFKDEVRKVGLELGLP 382


>gi|222528233|ref|YP_002572115.1| exsB protein [Caldicellulosiruptor bescii DSM 6725]
 gi|254764298|sp|B9MMB0|QUEC_ANATD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|222455080|gb|ACM59342.1| exsB protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 221

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 38/215 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR VV +SGG+DS+ +   +K  GY+V  ++  LY               +++  A++ C
Sbjct: 1   MRAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LY----------GQKHSKELEFAKKTC 49

Query: 81  DTINVSHYVFD---YEERFRNAVIVPFA---SSYAAGETPLPCVDCNRTVKFSDLL---- 130
             +++ + + D   + E   +A+  P       Y    T    V  NR +    LL    
Sbjct: 50  SLLSIPYKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNM---VLLSISA 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +    LGA  L  G +        D  K        ++  ++  Y       +       
Sbjct: 107 AYAISLGAKKLFYGAHAGDHPIYPDCRKEF------VEAMKNALYLADYIGLELEA---- 156

Query: 191 PLGDMKKESVRDLAREMG----LDIADKSDSQDIC 221
           P  DMKKE +     E+G    L  +     Q  C
Sbjct: 157 PYVDMKKEDILRRGLELGVNYSLTWSCYKGGQKAC 191


>gi|291400046|ref|XP_002716320.1| PREDICTED: guanine monophosphate synthetase [Oryctolagus cuniculus]
          Length = 713

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 45/213 (21%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 258 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 306

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 307 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 361

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC---------RPMDLERDQSYFL 177
              + +  +     +     ++        G  R  +          +   ++   +   
Sbjct: 362 DTFVKIANE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLIASGKAELIKTHHNDTE 416

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                ++   +  PL D  K+ VR L RE+GL 
Sbjct: 417 LIRKLREEGKVIEPLKDFHKDEVRILGRELGLP 449


>gi|262306111|gb|ACY45648.1| gln amidotransferase [Tomocerus sp. 'Tom2']
          Length = 196

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
          + +N ++ +V++ +SGGVDS+V AALLK+ 
Sbjct: 37 IRENVRNQKVLMLLSGGVDSTVCAALLKKA 66


>gi|262306035|gb|ACY45610.1| gln amidotransferase [Eurytemora affinis]
          Length = 191

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRD 43
          + +V++ +SGGVDSSV AALLK+ 
Sbjct: 43 NKKVILLISGGVDSSVCAALLKKA 66


>gi|218129687|ref|ZP_03458491.1| hypothetical protein BACEGG_01266 [Bacteroides eggerthii DSM 20697]
 gi|317475981|ref|ZP_07935236.1| GMP synthase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988099|gb|EEC54423.1| hypothetical protein BACEGG_01266 [Bacteroides eggerthii DSM 20697]
 gi|316907913|gb|EFV29612.1| GMP synthase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 517

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            L +   D +VV+ +SGGVDSSV A LL R  G ++  +     +     K +       
Sbjct: 206 QLKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF---VDHGMLRKNE----FKN 258

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            ++D     + + ++    D   +F             AG T  P  +  R +     + 
Sbjct: 259 VLHDY----ECLGLNVVGVDASAKFFAE---------LAGVT-EP--ERKRKIIGKGFID 302

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V  +  A  +    ++       D  +   I    +    +    +    ++    L  P
Sbjct: 303 VFDE-EAHKIKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMHLKLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+G+ 
Sbjct: 358 LRLLFKDEVRRVGRELGMP 376


>gi|329765326|ref|ZP_08256906.1| NAD+ synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138232|gb|EGG42488.1| NAD+ synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 264

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 54/204 (26%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
            ++K+  +  V++ +SGG+DS+V+A     +LK         TL +              
Sbjct: 28  QIEKSKSNG-VILGLSGGIDSAVLAYICKRILKEK-------TLAIIMPD------TQIT 73

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKF 126
              +  DA ++     + + + D         I P  + Y+    P      N    V+ 
Sbjct: 74  PRSETEDAMKMIALTGLEYKLID---------IKPIVNEYSNYLEPNERAKGNLRARVRT 124

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           + L         + L  G   +S   +G          +  D   D              
Sbjct: 125 NILYYYANVK--NYLVLGSSDKSEYLIG-------YFTKFGDGASD-------------- 161

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
               P+  + K  VR++AR +G+ 
Sbjct: 162 --IVPIISLYKLQVREIARVLGIP 183


>gi|222475561|ref|YP_002563978.1| GMP synthase (glutamine-hydrolyzing) (guaA) [Anaplasma marginale
           str. Florida]
 gi|254799667|sp|B9KH18|GUAA_ANAMF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222419699|gb|ACM49722.1| GMP synthase (glutamine-hydrolyzing) (guaA) [Anaplasma marginale
           str. Florida]
          Length = 529

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 68/200 (34%), Gaps = 39/200 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV A+SGGVDSSV + L+ +  G  ++ V            RKG     +D++    
Sbjct: 224 GGRVVAAISGGVDSSVASVLVHKAIGERLVCVF-----VDTGLLRKGEASVVRDLF---- 274

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +N+   V D    F      V  P       GET +                  + 
Sbjct: 275 -VGKLNMHVNVLDKSALFMQRLAGVQDPEVKRKIIGETFIEV-----------FEQEAKS 322

Query: 136 LGADVLA---TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           LG        T +       VG+ G + +               +    +     L  PL
Sbjct: 323 LGDIKFLMQGTIYPDVIESGVGESGTKIKSHHN-----------VGGLPEIMNLSLVEPL 371

Query: 193 GDMKKESVRDLAREMGLDIA 212
             + K+ VR L +E+GL  A
Sbjct: 372 RHLFKDEVRLLGKELGLPSA 391


>gi|199594484|gb|ACH90706.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|199594424|gb|ACH90676.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594468|gb|ACH90698.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|301318296|gb|ADK67063.1| GMP synthase [Stenotrophomonas maltophilia]
 gi|301318302|gb|ADK67066.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|199594414|gb|ACH90671.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594434|gb|ACH90681.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|15897551|ref|NP_342156.1| argininosuccinate synthase [Sulfolobus solfataricus P2]
 gi|284174872|ref|ZP_06388841.1| argininosuccinate synthase [Sulfolobus solfataricus 98/2]
 gi|6015836|emb|CAB57663.1| argininosuccinate synthase [Sulfolobus solfataricus P2]
 gi|13813806|gb|AAK40946.1| Argininosuccinate synthetase (argG) [Sulfolobus solfataricus P2]
 gi|261602314|gb|ACX91917.1| argininosuccinate synthase [Sulfolobus solfataricus 98/2]
          Length = 406

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 56/235 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +M++V+A SGG+D++V    LK         T +       ++            D +++
Sbjct: 15  EMKIVLAYSGGLDTTVSIRWLKE--------TFK-------AEIITVTVDVGQKDDFKKI 59

Query: 80  CDTINV----SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
            +   +     HY  D   +F N  I          E   P      R +    ++ V +
Sbjct: 60  EERAYIAGASKHYTIDAVRQFANNYIAYAIKLNGLYEGVYPLSTALARPLIAEKVVEVAK 119

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP-- 191
           + GA+ +A G                           DQ  F  A         +  P  
Sbjct: 120 KEGAEAVAHG---------------------STSKGNDQVRFDLAVKALYPDVKIIAPAR 158

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           + +M +E     A+E G+ I           V+  KY   +     G ++EGDI+
Sbjct: 159 IWNMTREDEIKYAKEKGIPIK----------VESDKYS--IDENLWGRSIEGDII 201


>gi|261392546|emb|CAX50101.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase;
           tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria
           meningitidis 8013]
          Length = 426

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 5   FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PNALHIHHGLSPRADDW 58

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 59  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 103 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 151

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 152 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 204


>gi|62719475|gb|AAX93338.1| GMP synthetase [Lactobacillus sanfranciscensis]
          Length = 236

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +V++ +SGGVDSSVVA LL R  G  +I V 
Sbjct: 157 DKKVLLGLSGGVDSSVVAVLLHRAIGDQLISVF 189


>gi|77413629|ref|ZP_00789815.1| GMP synthase [Streptococcus agalactiae 515]
 gi|77160338|gb|EAO71463.1| GMP synthase [Streptococcus agalactiae 515]
          Length = 520

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDMXIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPC 117
            K +G       V D   +     ++    D  +RF +    V  P              
Sbjct: 264 RKNEGD-----QVMD--MLGGKFGLNIIRVDASKRFLDLLSGVEDP---ERKRKIIGNEF 313

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V       F D    ++  G D LA G        + + G       +           +
Sbjct: 314 VYV-----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------V 356

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    +L  PL  + K+ VR L   +G+ 
Sbjct: 357 GGLPEDMQFELIEPLNTLFKDEVRALGTALGMP 389


>gi|325279322|ref|YP_004251864.1| GMP synthase (glutamine-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311131|gb|ADY31684.1| GMP synthase (glutamine-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 509

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           +L +   D RV++ +SGGVDS+V A LL R  G ++  + 
Sbjct: 206 ELKQKLGDDRVILGLSGGVDSTVAAMLLHRAVGKNLTCIF 245


>gi|302036712|ref|YP_003797034.1| NAD(+) synthase (glutamine-hydrolyzing) [Candidatus Nitrospira
           defluvii]
 gi|300604776|emb|CBK41108.1| NAD(+) synthase (glutamine-hydrolyzing) [Candidatus Nitrospira
           defluvii]
          Length = 589

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RVV+ +SGGVDS++ A +     G + V+GV +                +     D   
Sbjct: 332 KRVVIGLSGGVDSAITAVIAVDALGAENVLGVFM-----------PSPYTSRASREDVAD 380

Query: 79  VCDTINVSHYVFDYEERFR 97
           +   +++          F+
Sbjct: 381 MARRLHIQVDTLSITATFK 399


>gi|289706606|ref|ZP_06502956.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Micrococcus luteus SK58]
 gi|289556741|gb|EFD50082.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Micrococcus luteus SK58]
          Length = 539

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 44/206 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V +     R+    +     G+    AR 
Sbjct: 231 DKRAICGLSGGVDSAVAAALVQRAIGDRLTCVYVDHGLMREGESAEIEQAFGEAHGGARL 290

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         + D  E F +A          AG T     +  R +     +    +  A
Sbjct: 291 V---------MVDAREDFLSA---------LAGVT---DPEAKRKIIGERFIRTFEKAQA 329

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM--------------DLERDQSYFLFATTQQQ 184
           D++              D    R + +                   +   + +       
Sbjct: 330 DIVL-------ESEHDPDATEVRFLVQGTLYPDVVESGGGDGAANIKSH-HNVGGLPDDI 381

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL ++ K+ VR +  E+GL 
Sbjct: 382 EFELCEPLRELFKDEVRAVGAELGLP 407


>gi|262306071|gb|ACY45628.1| gln amidotransferase [Loxothylacus texanus]
          Length = 197

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 25/108 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AALL +  G D VI + +     RK   ++            +
Sbjct: 43  DHKVLLLVSGGVDSTVCAALLHKALGSDRVITLHIDNGFMRKDESKQ-----------VQ 91

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                I ++  V D   RF              G T +P    N+T++
Sbjct: 92  ESLSKIGLNLKVVDAXHRFS------------HGTTTIPEPGTNKTMR 127


>gi|25453414|ref|NP_037289.1| argininosuccinate synthase [Rattus norvegicus]
 gi|114291|sp|P09034|ASSY_RAT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|55767|emb|CAA30999.1| unnamed protein product [Rattus norvegicus]
 gi|203016|gb|AAA40771.1| argininosuccinate synthetase [Rattus norvegicus]
 gi|38648840|gb|AAH63146.1| Argininosuccinate synthetase 1 [Rattus norvegicus]
 gi|149039053|gb|EDL93273.1| argininosuccinate synthetase [Rattus norvegicus]
          Length = 412

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|239918131|ref|YP_002957689.1| GMP synthase (glutamine-hydrolyzing) [Micrococcus luteus NCTC 2665]
 gi|259647685|sp|C5CBZ4|GUAA_MICLC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|239839338|gb|ACS31135.1| GMP synthase (glutamine-hydrolyzing) [Micrococcus luteus NCTC 2665]
          Length = 539

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 44/206 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V +     R+    +     G+    AR 
Sbjct: 231 DKRAICGLSGGVDSAVAAALVQRAIGDRLTCVYVDHGLMREGESAEIEQAFGEAHGGARL 290

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         + D  E F +A          AG T     +  R +     +    +  A
Sbjct: 291 V---------MVDAREDFLSA---------LAGVT---DPEAKRKIIGERFIRTFEKAQA 329

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM--------------DLERDQSYFLFATTQQQ 184
           D++              D    R + +                   +   + +       
Sbjct: 330 DIVL-------ESEHDPDATEVRFLVQGTLYPDVVESGGGDGAANIKSH-HNVGGLPDDI 381

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL ++ K+ VR +  E+GL 
Sbjct: 382 EFELCEPLRELFKDEVRAVGAELGLP 407


>gi|224437186|ref|ZP_03658167.1| NH(3)-dependent NAD(+) synthetase NadE [Helicobacter cinaedi CCUG
           18818]
 gi|313143652|ref|ZP_07805845.1| NH(3)-dependent NAD synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313128683|gb|EFR46300.1| NH(3)-dependent NAD synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 281

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 49/197 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDT 82
           V+ +SGG+DS+VVAAL         GV L L +         S   +     DA  +   
Sbjct: 25  VLGLSGGIDSAVVAAL---------GV-LALGSENLKVLLMPSLSSSPIHFNDALNLAKI 74

Query: 83  INVSHYVFDYEER---------FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +N++  V   E           F N ++               C      ++ + L    
Sbjct: 75  LNLTPQVIKLESFQSHFASHLGFENDLLKSDLDDRQKLRMGNFC----SRLRMALLYDYA 130

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                          + L +G   K   ++              + T    L     P+G
Sbjct: 131 ------------SAENALVLGTSNKSELVL-------------GYGTIFGDLAYAINPIG 165

Query: 194 DMKKESVRDLAREMGLD 210
            + K  +  LA+ + L 
Sbjct: 166 SLYKTQIFALAKHLNLP 182


>gi|212224254|ref|YP_002307490.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
 gi|212009211|gb|ACJ16593.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 199

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+V    SGG DSS+ A +L R GY+V  VT+                   +   AR   
Sbjct: 1  MKVYHLYSGGKDSSLAAWILTRLGYEVRLVTVSF-------------GLLDNWRYAREAA 47

Query: 81 DTINVSHYVF 90
           T+   H V 
Sbjct: 48 QTLGFEHEVL 57


>gi|199594494|gb|ACH90711.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|194290404|ref|YP_002006311.1| queuosine biosynthesis protein quec homolog [Cupriavidus
          taiwanensis LMG 19424]
 gi|254764327|sp|B3R5T4|QUEC_CUPTR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|193224239|emb|CAQ70248.1| queuosine biosynthesis protein QueC putative homolog [Cupriavidus
          taiwanensis LMG 19424]
          Length = 227

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +V +SGG+DS+ V A+ +  G++   ++++                  ++  A+RV 
Sbjct: 3  QRAIVLLSGGLDSATVLAMARAQGFETYALSMRY-----------GQRHSSELEAAKRVA 51

Query: 81 DTIN-VSHYVFDY 92
            +  V H + D 
Sbjct: 52 AALGAVRHEIVDL 64


>gi|167757165|ref|ZP_02429292.1| hypothetical protein CLORAM_02715 [Clostridium ramosum DSM 1402]
 gi|237735747|ref|ZP_04566228.1| succinoglycan biosynthesis regulator [Mollicutes bacterium D7]
 gi|167703340|gb|EDS17919.1| hypothetical protein CLORAM_02715 [Clostridium ramosum DSM 1402]
 gi|229381492|gb|EEO31583.1| succinoglycan biosynthesis regulator [Coprobacillus sp. D7]
          Length = 227

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M+V+V  SGGVDS+   AL  +  G D V+ +                    +++  A +
Sbjct: 1   MKVLVLFSGGVDSTTALALAIQEHGKDNVVAL-----------SISYGQKHTKEIEVANK 49

Query: 79  VCDTINVSHYVFDYEERF-----------RNAVIVPFASSYAAGETPLPCVDCNRTVKF- 126
           +     V H   D  + F            N +     +         P    +  V F 
Sbjct: 50  IAQFYQVEHLYLDLAKIFTYSNCSLLQHSDNEIPHESYNEQLNKTDGNPV---STYVPFR 106

Query: 127 -SDLL----SVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
               L    S+    G +++  G H   +      D  +            +Q+  ++  
Sbjct: 107 NGLFLSSAASIALSKGCNIIYYGAHSDDAAGSAYPDCSKVFNNAM------NQA--IYEG 158

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +  QL  ++ P  +M K  +  +   +G+ 
Sbjct: 159 SGHQLE-IKAPFVEMTKADIVKIGLSLGVP 187


>gi|315656315|ref|ZP_07909206.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493317|gb|EFU82917.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 528

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 67/218 (30%), Gaps = 57/218 (26%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+  +SGGVDSSV AAL+ +  G  +  +                    +
Sbjct: 216 EIRQRVGDAQVICGLSGGVDSSVAAALVHKAIGDQLTCIF--------VDHGLLRAGERE 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAG--ETPLP 116
            V   R     + +     D   RF            +  +I   F  S+ A   E    
Sbjct: 268 QVE--RDYAANMGIRVKYVDESARFLGALAGVSEPEKKRKIIGREFIRSFEAAQREVVAE 325

Query: 117 CVDCNRTVKF---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
                  VKF     L   V    G    A      +   + +D K              
Sbjct: 326 VGASGGEVKFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLKFE------------ 373

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                          L  PL  + K+ VR+L R++GL 
Sbjct: 374 ---------------LIEPLRKLFKDEVRELGRQLGLP 396


>gi|303249410|ref|ZP_07335633.1| asparagine synthase [Desulfovibrio fructosovorans JJ]
 gi|302489188|gb|EFL49157.1| asparagine synthase [Desulfovibrio fructosovorans JJ]
          Length = 273

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 68/209 (32%), Gaps = 58/209 (27%)

Query: 24  VVAMSGGVDSSVV--AAL--LK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VA SGGVDS +V  AAL  L       V  VTL+                  DV  A R
Sbjct: 21  LVAFSGGVDSLLVLRAALDALSPEA---VPAVTLR-----------TPYTPPHDVAAATR 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               +   H + D           PF         P  C  C R + F  L+      G 
Sbjct: 67  AARNMGARHEILDI----------PF-PEALRDNPPERCYTCKRLL-FGRLVDSAAASGL 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
             +  G          DD    R   R +               ++L  +  PL    + 
Sbjct: 115 GNVFDGTNA-------DDLDDHRPGMRAV---------------KELG-IVSPLLAAGLA 151

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQ 225
           K  +R L+RE+GL   D+      C + +
Sbjct: 152 KADIRRLSRELGLPGWDRP--AGACLLTR 178


>gi|199594458|gb|ACH90693.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|199594392|gb|ACH90660.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594394|gb|ACH90661.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594398|gb|ACH90663.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594402|gb|ACH90665.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594482|gb|ACH90705.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|189345786|ref|YP_001942315.1| GMP synthase [Chlorobium limicola DSM 245]
 gi|226738416|sp|B3EEV3|GUAA_CHLL2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|189339933|gb|ACD89336.1| GMP synthase, large subunit [Chlorobium limicola DSM 245]
          Length = 513

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 36/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D  V+  +SGGVDSSV A L+ R  G ++  V +     RK    K       
Sbjct: 213 EIRRTAGDETVICGISGGVDSSVAAVLVSRAIGKNLHCVFVDNGLLRKNEADK------- 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                 +    + +   + D  E F      V  P       G T +          F +
Sbjct: 266 ----VMQFLKHLGLRLTLADASELFLKRLKNVASPEKKRKIIGRTFIQV--------FEE 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L    +           I S    G     +                +    ++    L
Sbjct: 314 QLDK-EKFLVQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKLKL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 361 IEPLRELFKDEVRAVGRELGIA 382


>gi|199594516|gb|ACH90722.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|301318298|gb|ADK67064.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +  +R+ + 
Sbjct: 86  -AEHMGVKVIRVNAADRYFSK 105


>gi|199594470|gb|ACH90699.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594508|gb|ACH90718.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594518|gb|ACH90723.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|301318306|gb|ADK67068.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +  +R+ + 
Sbjct: 86  -AEHMGVKVIRVNAADRYFSK 105


>gi|11497869|ref|NP_069091.1| GMP synthase subunit B [Archaeoglobus fulgidus DSM 4304]
 gi|13626770|sp|O29986|GUAAB_ARCFU RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|2650384|gb|AAB90977.1| GMP synthase (guaA-1) [Archaeoglobus fulgidus DSM 4304]
          Length = 303

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 43/245 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +  KD + ++A+SGGVDSSV   L  +  G  +I V            R+G     +
Sbjct: 13  EIRERVKDGKAIIALSGGVDSSVCTVLAHKALGDRLIPVF-----VDTGLMREGEPEKIK 67

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLL 130
           ++          N+     D +E F  A           G T P         +      
Sbjct: 68  EI--------FGNMGLVFIDAKEEFFKA---------LKGVTDPEEKRKVIGELFVRIFE 110

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V  +  A+ L               G     +       +         T  +  D+  
Sbjct: 111 RVAEEHNAEYLI-------------QGTIYPDIIESQGGIKSHHNVGGFPTSYKFKDVIE 157

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           PL ++ K+ VR++AR +GL    K  S+ + F   G    +V  +        +IV    
Sbjct: 158 PLRELYKDEVREVARYLGLP---KEISERMPFPGPGLAVRIVGEVTPEKV---EIVRKAN 211

Query: 251 QILGR 255
           +I+  
Sbjct: 212 KIVEE 216


>gi|86134145|ref|ZP_01052727.1| GMP synthase [Polaribacter sp. MED152]
 gi|85821008|gb|EAQ42155.1| GMP synthase [Polaribacter sp. MED152]
          Length = 511

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +VV+ +SGGVDSSV A LL + 
Sbjct: 214 NDKVVLGLSGGVDSSVAAVLLHKA 237


>gi|167044698|gb|ABZ09369.1| putative arginosuccinate synthase [uncultured marine microorganism
           HF4000_APKG7H23]
          Length = 401

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    L      +V+ +T+ L                  + DAR   
Sbjct: 4   KIVLAYSGGLDTSVAIRWLMDQYSAEVVTLTVDL--------------GAVQLQDARERA 49

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             I  V   V D  + F N  + P   + +  E   P      R +    ++ V  + GA
Sbjct: 50  LQIGAVKAVVLDARQEFVNDFVWPALQAGSVYEHAYPLATALGRPLIAKLMVQVALEEGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 FAVAHG 115


>gi|188527135|ref|YP_001909822.1| NAD synthetase [Helicobacter pylori Shi470]
 gi|238691900|sp|B2USG0|NADE_HELPS RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|188143375|gb|ACD47792.1| NH(3)-dependent NAD+ synthetase (nadE) [Helicobacter pylori Shi470]
          Length = 260

 Score = 50.9 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 50/220 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V  +  +   A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VFKKNAH---ALLMPSSVSMPESKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---SVTRQLG 137
           +T ++ +                  + Y            N   K + L    +   +L 
Sbjct: 76  ETFSIPY-------------TEYSIAPY--------DAIFNSHFKDASLTRKGNFCARLR 114

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L         L +G   K  R++              + T    L     P+G++ K
Sbjct: 115 MAFLYDYSLKSDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFK 161

Query: 198 ESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
             V +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 162 TEVYELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|237722675|ref|ZP_04553156.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448485|gb|EEO54276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 248

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R  +       V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGRRAHIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+   V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCEAYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|199594490|gb|ACH90709.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|148554324|ref|YP_001261906.1| exsB protein [Sphingomonas wittichii RW1]
 gi|189029534|sp|A5V652|QUEC_SPHWW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|148499514|gb|ABQ67768.1| exsB protein [Sphingomonas wittichii RW1]
          Length = 230

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 23/202 (11%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + N +  R +V +SGG+DS V   + +  G+ +  +T+        ++R        ++ 
Sbjct: 4   NANREGRRAIVLLSGGLDSMVSGGIAREQGFALAALTI------DYNQR-----HRVELE 52

Query: 75  DARRVCDTINVSHYV---FDYEERFRNAVIVPFASSYAAGET---PLPCVDCNRTVKFSD 128
            A+RV   + V  +V    +    F  + +         G     P   V    T+  S 
Sbjct: 53  AAKRVAAALGVDRHVTLPLNLRA-FGGSSLTDDIDVPKDGVMPGIPSTYVPARNTIFLSL 111

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L      GA  +  G          D    R           D +  +    Q      
Sbjct: 112 ALGFAEATGARDIFLGVNALDYSGYPDC---RPEFIAAFQHLADLATKMGVEGQGFTIHA 168

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  M K  +   A  +GLD
Sbjct: 169 --PLQHMTKADIAQEAARLGLD 188


>gi|15679119|ref|NP_276236.1| hypothetical protein MTH1108 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|41018374|sp|O27180|QUEC_METTH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|2622210|gb|AAB85597.1| conserved protein [Methanothermobacter thermautotrophicus str.
          Delta H]
 gi|3023053|gb|AAC12720.1| ORF2R [Methanothermobacter thermautotrophicus]
          Length = 222

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR +  +SGG+DS+V  AL+  + Y++  +T             G   A  ++  ARR+ 
Sbjct: 1  MRAISILSGGMDSAVATALMMDE-YEIHAITF----------DYGQRSARMELEYARRLS 49

Query: 81 DTINVSHYVFDYE 93
          + + + H   D +
Sbjct: 50 EHLGIEHTTLDLQ 62


>gi|323357244|ref|YP_004223640.1| GMP synthase, PP-ATPase domain/subunit [Microbacterium testaceum
           StLB037]
 gi|323273615|dbj|BAJ73760.1| GMP synthase, PP-ATPase domain/subunit [Microbacterium testaceum
           StLB037]
          Length = 526

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 66/190 (34%), Gaps = 19/190 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDS+V  AL+    G  +I V            R+G     ++ Y    V 
Sbjct: 223 RVISALSGGVDSAVSTALVHEAVGDQLIAVF-----VDHGLLRQGEREQVENDY----VA 273

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T  V     D  E F NA+                 +     V+ +DL++  +  G  V
Sbjct: 274 ST-GVKLITVDARETFLNALAGVSDPEQKRKIIGREFIRAFEKVQ-ADLVAEAKAEGEQV 331

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                       V   G       +           +    +    +L  PL  + K+ V
Sbjct: 332 RFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLQFELVEPLRTLFKDEV 384

Query: 201 RDLAREMGLD 210
           R + RE+GL 
Sbjct: 385 RAIGRELGLP 394


>gi|302390349|ref|YP_003826170.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200977|gb|ADL08547.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 316

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA--LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD RV+V +SGG DS +     LLK  GYDV  + +        S+R            
Sbjct: 46  PKD-RVLVVVSGGKDS-MALWHILLKE-GYDVTAMYI-NLGIGDYSERSQEV-------- 93

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             R  +       V + E+ +   +  P+ +      T   C  C   +K      V   
Sbjct: 94  VERFSEEHEAPLIVKNIEKEYGLNI--PWLAREIRRST---CSLCGT-IKRYLFNKVALD 147

Query: 136 LGADVLATGHYI 147
            G DV+ATGH +
Sbjct: 148 EGFDVVATGHNL 159


>gi|298675753|ref|YP_003727503.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanohalobium evestigatum Z-7303]
 gi|298288741|gb|ADI74707.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanohalobium evestigatum Z-7303]
          Length = 362

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 67/205 (32%), Gaps = 45/205 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V  MSGG+DS V A ++ + G  +I +     +       KG          A +V D +
Sbjct: 171 VALMSGGIDSPVAAYMMMKRGCSIIPIY---VDIDPYLGEKGK-------ERAFKVVDAL 220

Query: 84  -----NVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 +   V   DY   +    I      Y +      C+ C R      L  +   L
Sbjct: 221 KQYQPGIELEVIGDDY--LYTAKKI---LKHYNS--DKYTCLICKRR-----LYRIAEDL 268

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                A G      +  GD       + +      D  Y L   T   +     PL    
Sbjct: 269 ANKYKALG------IVTGD------SLGQVASQTLDNLYVLDEATNLPVYR---PLIGFD 313

Query: 197 KESVRDLAREMGLDIADKSDSQDIC 221
           KE V D+AR +G   +  + S   C
Sbjct: 314 KEEVIDIARRIG-TYSLSTISTGGC 337


>gi|199594454|gb|ACH90691.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594488|gb|ACH90708.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|199594452|gb|ACH90690.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|199594396|gb|ACH90662.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594400|gb|ACH90664.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594404|gb|ACH90666.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594406|gb|ACH90667.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594408|gb|ACH90668.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594410|gb|ACH90669.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594416|gb|ACH90672.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594418|gb|ACH90673.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594420|gb|ACH90674.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594422|gb|ACH90675.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594428|gb|ACH90678.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594430|gb|ACH90679.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594432|gb|ACH90680.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594436|gb|ACH90682.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594438|gb|ACH90683.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594440|gb|ACH90684.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594442|gb|ACH90685.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594444|gb|ACH90686.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594446|gb|ACH90687.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594448|gb|ACH90688.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594456|gb|ACH90692.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594460|gb|ACH90694.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594462|gb|ACH90695.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594464|gb|ACH90696.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594472|gb|ACH90700.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594474|gb|ACH90701.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594480|gb|ACH90704.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594486|gb|ACH90707.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594492|gb|ACH90710.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594496|gb|ACH90712.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594498|gb|ACH90713.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594500|gb|ACH90714.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594504|gb|ACH90716.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594510|gb|ACH90719.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594520|gb|ACH90724.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594526|gb|ACH90727.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594528|gb|ACH90728.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594530|gb|ACH90729.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|301318280|gb|ADK67055.1| GMP synthase [Stenotrophomonas maltophilia]
 gi|301318282|gb|ADK67056.1| GMP synthase [Stenotrophomonas maltophilia]
 gi|301318284|gb|ADK67057.1| GMP synthase [Stenotrophomonas maltophilia]
 gi|301318286|gb|ADK67058.1| GMP synthase [Stenotrophomonas maltophilia]
 gi|301318288|gb|ADK67059.1| GMP synthase [Stenotrophomonas maltophilia]
 gi|301318300|gb|ADK67065.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|84497925|ref|ZP_00996722.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Janibacter sp. HTCC2649]
 gi|84381425|gb|EAP97308.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Janibacter sp. HTCC2649]
          Length = 529

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDSSV AAL++R  G  +  V            R G     +       
Sbjct: 224 DKRVLCALSGGVDSSVAAALVQRAVGDQLTCVF-----VDHGLLRSGEAEQVRQ----EF 274

Query: 79  VCDTINVSHYVFDYEERF 96
           V  T  V     D +++F
Sbjct: 275 VAAT-GVDLVTVDAKDQF 291


>gi|145595855|ref|YP_001160152.1| NAD+ synthetase [Salinispora tropica CNB-440]
 gi|145305192|gb|ABP55774.1| NH(3)-dependent NAD(+) synthetase [Salinispora tropica CNB-440]
          Length = 598

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSSVVAAL     G D V+GV+L                +     DA  + 
Sbjct: 330 VVLGLSGGIDSSVVAALAVDALGADRVVGVSL-----------PSQHSSEHSREDAAELA 378

Query: 81  DTINVSHYV 89
               + + +
Sbjct: 379 KRTGLDYRI 387


>gi|16082141|ref|NP_394578.1| hypothetical protein Ta1119 [Thermoplasma acidophilum DSM 1728]
 gi|10640432|emb|CAC12246.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 314

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRK 64
           N +DL K    +R+ VA+SGG DSSV   LL     KR   ++   T             
Sbjct: 40  NQVDLKKPM--VRISVAISGGKDSSVTLYLLHKILSKRRNVELTAFT---------VDEG 88

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
            S      +  A ++   + V H +  +++ F         S   A  + +PC  C   +
Sbjct: 89  ISGYRPAGLESAIKLTKMLGVDHSIIRFQDSFGMT----LDSIVGADASRIPCSYCGP-L 143

Query: 125 KFSDLLSVTRQLGADVLATG----HYIRSRLYVGDDGKRRRIMC-RPMDLERD 172
           +   +  +  +  AD +A G     Y +S L     G   R++   P    +D
Sbjct: 144 RRKLINEMAERQNADYVALGLNLDDYSQSILMNVAKGDYDRLLRMSPQKEAKD 196


>gi|317498604|ref|ZP_07956897.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894091|gb|EFV16280.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 515

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 77/208 (37%), Gaps = 42/208 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV A LL R  G  +  V     +     K +G    G 
Sbjct: 209 EIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEGV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + ++R+ +            G T  P  +  R +       
Sbjct: 266 FGENGQ-----FDLNFIRVNAQQRYYDK---------LKGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQ 182
                 +++GA D LA G      +  G  G+    +       +    D          
Sbjct: 309 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD---------- 358

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++  PL D+ K+ VR    ++G+ 
Sbjct: 359 --FKEIIEPLRDLFKDEVRQAGLQLGIP 384


>gi|312877455|ref|ZP_07737418.1| PP family ATPase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795776|gb|EFR12142.1| PP family ATPase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 268

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 82/239 (34%), Gaps = 46/239 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LLK   +DV+G                     ++  DA ++   
Sbjct: 24  VLVAFSGGVDST---FLLKVS-FDVLG------EKAIGVFSSSVLSPQREKEDAAKLAKD 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I     V +  + F N     F          L C  C       DL+   + L  ++  
Sbjct: 74  IGARLIVIE-RDVFSN---EDFMK-----NDRLRCYYCK-----KDLIKRLKVLKEEL-- 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                   L    +G     +       +       A  ++ +    F  G + KE +R 
Sbjct: 118 -------NLNEIVEGSNIDDLQDFRPGRK-------ALEEEGIKSPLFEAG-LTKEEIRY 162

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNG--QILGRHNG 258
           L++E GL    K  S   C V +  Y D +       I    D +   G  Q+  RH+G
Sbjct: 163 LSKEFGLSTYQKHSS--ACLVTRIPYGDEITLEKLQMIEKAEDFLVQKGFSQVRVRHHG 219


>gi|239617986|ref|YP_002941308.1| NAD+ synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506817|gb|ACR80304.1| NAD+ synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 578

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASK 62
            A  L   D  K      V + +SGG+DSS+ A +     G + V+GV +          
Sbjct: 295 NALVLGLRDYVKKNGFSTVTLGLSGGMDSSLAACIAVEALGRENVVGVLM---------- 344

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                 +   + DA+ +   + +          + +  +   + ++   E  +   +   
Sbjct: 345 -PSEYTSNTSIEDAKMLAKNLGIKTLTVPITAIYHS-YLGTLSDAFKGREQDVTEENIQA 402

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
            ++ + L++++ + G  VLATG
Sbjct: 403 RIRGNILMALSNKFGWLVLATG 424


>gi|301318294|gb|ADK67062.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|257451665|ref|ZP_05616964.1| GMP synthase [Fusobacterium sp. 3_1_5R]
          Length = 315

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 30/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSV A L+ R     IG  +T    ++    K +          +  
Sbjct: 18  DKKVILGLSGGVDSSVAATLIHRA----IGDQLTCIFVDTGLLRKNEAKTVMEVYSEN-- 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                +N+     D EERF + +                 +     +         ++  
Sbjct: 72  ---FHMNIKC--VDAEERFLSKLKGVSDPEQKRK------IIGKEFI--EVFNEEAKKFE 118

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A+ LA G  I   +      K   +  +           +    +     L  PL ++ 
Sbjct: 119 DAEFLAQG-TIYPDVIESVSVKGPSVTIKSHHN-------VGGLPEDMKFQLLEPLRELF 170

Query: 197 KESVRDLAREMGLD 210
           K+ VR++ R++G+ 
Sbjct: 171 KDEVREVGRQLGIP 184


>gi|199594502|gb|ACH90715.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594512|gb|ACH90720.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|199594426|gb|ACH90677.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|53712261|ref|YP_098253.1| GMP synthase [Bacteroides fragilis YCH46]
 gi|60680438|ref|YP_210582.1| GMP synthase [Bacteroides fragilis NCTC 9343]
 gi|253563703|ref|ZP_04841160.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 3_2_5]
 gi|265762449|ref|ZP_06091017.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_16]
 gi|81316492|sp|Q5LGV6|GUAA_BACFN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81383393|sp|Q64XQ7|GUAA_BACFR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52215126|dbj|BAD47719.1| glutaminne-hydrolyzing GMP synthase [Bacteroides fragilis YCH46]
 gi|60491872|emb|CAH06630.1| putative GMP synthase [glutamine-hydrolyzing] [Bacteroides fragilis
           NCTC 9343]
 gi|251947479|gb|EES87761.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 3_2_5]
 gi|263255057|gb|EEZ26403.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_16]
 gi|301161971|emb|CBW21515.1| putative GMP synthase [glutamine-hydrolyzing] [Bacteroides fragilis
           638R]
          Length = 507

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 29/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +VV+ +SGGVDSSV A LL R  G ++  +     +     K +        ++D   
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF---VDHGMLRKNE----FKNVMHDY-- 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + ++    D  E+F +            G T  P  +  R +     + V  +  A
Sbjct: 264 --ECLGLNVIGVDASEKFFSE---------LEGVT-EP--ERKRKIIGKGFIDVFDE-EA 308

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L    ++       D  +   I    +    +    +    ++    L  PL  + K+
Sbjct: 309 HKLKDVKWLAQGTIYPDCIESLSITGTVIKSHHN----VGGLPEKMNLKLCEPLRLLFKD 364

Query: 199 SVRDLAREMGLD 210
            VR + RE+G+ 
Sbjct: 365 EVRRVGRELGMP 376


>gi|237755420|ref|ZP_04584046.1| PP-loop domain protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692420|gb|EEP61402.1| PP-loop domain protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 304

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+ +++VA+SGG DS +     L + GY+V G  + L                  +  A+
Sbjct: 47  KNSKILVAVSGGKDS-LSLWNALAKLGYNVDGFYINL-----GIGDYSQKSKELALKFAK 100

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++  T+N+           ++ +           +    C  C   +K   +    ++LG
Sbjct: 101 KIGKTLNI--------VELKDEIA--TIPEMKTYDNRPACSICGT-IKRYFMNKKAKELG 149

Query: 138 ADVLATGHYI 147
            +++ATGH +
Sbjct: 150 YNIIATGHNL 159


>gi|256827581|ref|YP_003151540.1| NAD+ synthetase [Cryptobacterium curtum DSM 15641]
 gi|256583724|gb|ACU94858.1| NAD+ synthetase [Cryptobacterium curtum DSM 15641]
          Length = 276

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 16/124 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A L     G   V GV L            G   +   V DA     
Sbjct: 27  VIGLSGGIDSALCAVLCVDAFGASSVHGVLL-----------PGPYSSAHSVEDAEDEAR 75

Query: 82  TINVSHYVFDYEERFRNAVIVPFASS-YAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           T+ + + V    E ++        +         LP  +     +   L++++   G  +
Sbjct: 76  TLGIDYQVLSIVEPYQA--FAELLAEPCGKAWDNLPSQNTQARCRMVCLMALSNAHGWML 133

Query: 141 LATG 144
           + TG
Sbjct: 134 VNTG 137


>gi|218508534|ref|ZP_03506412.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli Brasil 5]
          Length = 347

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           ++ K   D RV+ A+SGGVDSSV A L+   
Sbjct: 215 EIRKQVGDKRVICALSGGVDSSVAALLIHEA 245


>gi|189467907|ref|ZP_03016692.1| hypothetical protein BACINT_04299 [Bacteroides intestinalis DSM
           17393]
 gi|189436171|gb|EDV05156.1| hypothetical protein BACINT_04299 [Bacteroides intestinalis DSM
           17393]
          Length = 517

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           +L +   D +VV+ +SGGVDSSV A LL R  G ++  + 
Sbjct: 206 ELKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF 245


>gi|160898454|ref|YP_001564036.1| GMP synthase [Delftia acidovorans SPH-1]
 gi|160364038|gb|ABX35651.1| GMP synthase, large subunit [Delftia acidovorans SPH-1]
          Length = 540

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 66/207 (31%), Gaps = 54/207 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L       +              
Sbjct: 231 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMEMFEG---------- 280

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                 ++      D  + F                   P  +  R +     + V    
Sbjct: 281 -----KLHAKVIRVDASDLFLG----------KLAGVSEP--EAKRKIIGGLFVDVFKAE 323

Query: 133 TRQL--------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
             +L        GA  LA G      +  G    ++ +  +           +     +Q
Sbjct: 324 AAKLKAGDGGHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQ 375

Query: 185 LC-DLRFPLGDMKKESVRDLAREMGLD 210
           L   L  PL D+ K+ VR+L   +GL 
Sbjct: 376 LGLKLLEPLRDLFKDEVRELGVALGLP 402


>gi|157149979|ref|YP_001450409.1| GMP synthase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074773|gb|ABV09456.1| GMP synthase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 518

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 206 MDNFIDMQIKQIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 260

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      ++     +     ++    D  +RF + +                 V   
Sbjct: 261 LRKGEADQVMEM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 314

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 315 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 358

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 359 EDMQFELIEPLNTLYKDEVRALGTELGMP 387


>gi|116327008|ref|YP_796728.1| argininosuccinate synthase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332326|ref|YP_802044.1| argininosuccinate synthase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122279947|sp|Q04P84|ASSY_LEPBJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|122285144|sp|Q056F0|ASSY_LEPBL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116119752|gb|ABJ77795.1| Argininosuccinate synthase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116126015|gb|ABJ77286.1| Argininosuccinate synthase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 403

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 44/216 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + ++    ++V+A SGG+D+SV+   LK   G +VI  T     +    K + S    + 
Sbjct: 1   MAQSKPVKKIVLAYSGGLDTSVILTWLKETYGCEVIAFT-----ADVGQKEELSGLEEKG 55

Query: 73  VYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +   A +V        Y+ D    F    I P     A  E          R +    ++
Sbjct: 56  IKTGASKV--------YIQDLRLEFARDFIFPAIQGNALYEMRYLLGTSLARPLIAKAMV 107

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V  + GAD  A G                           DQ  F              
Sbjct: 108 EVAEKEGADAFAHG---------------------ATGKGNDQVRFELGVKSLAPEKTII 146

Query: 191 PLGDMK----KESVRDLAREMGLDIADKSD---SQD 219
               +     +  + + A+  G+ ++   +   S D
Sbjct: 147 APWRIWNFGGRSDLIEYAKSKGIPVSITVEKPYSMD 182


>gi|332177230|gb|AEE12920.1| GMP synthase (glutamine-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 506

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 58/187 (31%), Gaps = 41/187 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++A+SGGVDSSV A LL R  G  +  +      ++L  + +      +   G    DA
Sbjct: 215 VIMALSGGVDSSVAAVLLHRAIGNQLTCIFVDHGLMRLGEAEQILADYKALGLGCIKVDA 274

Query: 77  RRVCDTINVSHYVFDYEERFRNAVI-VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 +     V D     +  VI   F   + A    LP                   
Sbjct: 275 S--AKFLGDLAGVRD--PEAKRKVIGRDFIEVFEAEAKKLPQARW--------------- 315

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG   +     I S    G   K                  +    ++    L  PL  +
Sbjct: 316 LGQGTI-YPDIIESINITGKVIKSHHN--------------VGGLPERMHLKLVEPLKHL 360

Query: 196 KKESVRD 202
            K+ VR 
Sbjct: 361 FKDEVRR 367


>gi|289192655|ref|YP_003458596.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocaldococcus sp. FS406-22]
 gi|288939105|gb|ADC69860.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocaldococcus sp. FS406-22]
          Length = 373

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 47/197 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+  +S G+DS V A ++ R G   + + L++                + +   R+
Sbjct: 179 SQGKVLCLISDGIDSPVAAFMMIRRGCRAVLLHLKM--------------NEEALNKVRK 224

Query: 79  VCDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSV 132
           + + +      +   V+DY +  ++ V      S         C+ C R + K ++    
Sbjct: 225 IVEILSDYDTELEFVVYDYSKDIKDIVEK--LKSIKKEN--YTCIFCKRKMLKVAE--KY 278

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-LRFP 191
            + L  D + TG  +                         Q+        + +   +  P
Sbjct: 279 AKYLDCDAIVTGDNLGQVAS--------------------QTLKNLRVISENISYPILRP 318

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K  + ++A+++G
Sbjct: 319 LIGLDKNDIVEIAKDIG 335


>gi|224538422|ref|ZP_03678961.1| hypothetical protein BACCELL_03316 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519957|gb|EEF89062.1| hypothetical protein BACCELL_03316 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 517

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           +L +   D +VV+ +SGGVDSSV A LL R  G ++  + 
Sbjct: 206 ELKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGKNLTCIF 245


>gi|170054644|ref|XP_001863223.1| argininosuccinate synthase [Culex quinquefasciatus]
 gi|167874910|gb|EDS38293.1| argininosuccinate synthase [Culex quinquefasciatus]
          Length = 411

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              R+++A SGG+D+S +   L   G++VI   +                  +D   AR 
Sbjct: 2   SQERILLAYSGGLDTSCILKWLLEKGHEVI-CFMA------------DVGQEEDFGAARE 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDL 129
               I      V D +++F    + P           Y  G +   PC+          L
Sbjct: 49  KALRIGATDVIVKDMKQQFVERFVWPALQMGLIYEDRYLLGTSLARPCISIG-------L 101

Query: 130 LSVTRQLGADVLATG 144
           +    Q G  +++ G
Sbjct: 102 VEAAAQRGCTIISHG 116


>gi|167767535|ref|ZP_02439588.1| hypothetical protein CLOSS21_02054 [Clostridium sp. SS2/1]
 gi|167710827|gb|EDS21406.1| hypothetical protein CLOSS21_02054 [Clostridium sp. SS2/1]
          Length = 515

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 77/208 (37%), Gaps = 42/208 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V++A+SGGVDSSV A LL R  G  +  V     +     K +G    G 
Sbjct: 209 EIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGKQLTCVF---VDHGLLRKDEGDEVEGV 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FS 127
              + +      +++    + ++R+ +            G T  P  +  R +       
Sbjct: 266 FGENGQ-----FDLNFIRVNAQQRYYDK---------LKGVT-EP--EAKRKIIGEEFIR 308

Query: 128 DLLSVTRQLGA-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQ 182
                 +++GA D LA G      +  G  G+    +       +    D          
Sbjct: 309 IFEEEAKKIGAVDFLAQGTIYPDVVESGLGGESAVIKSHHNVGGLPDFVD---------- 358

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
               ++  PL D+ K+ VR    ++G+ 
Sbjct: 359 --FKEIIEPLRDLFKDEVRQAGLQLGIP 384


>gi|150388488|ref|YP_001318537.1| argininosuccinate synthase [Alkaliphilus metalliredigens QYMF]
 gi|172052473|sp|A6TL10|ASSY_ALKMQ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|149948350|gb|ABR46878.1| Argininosuccinate synthase [Alkaliphilus metalliredigens QYMF]
          Length = 414

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 34/141 (24%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +     +VV+A SGG+D+SV+   L+   GY+VI                  C       
Sbjct: 2   ETKNKKKVVLAYSGGLDTSVILKWLEETYGYEVIAA----------------CVNVGQTE 45

Query: 75  DARRV---CDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRT 123
           D   +            Y+ D  E F    I P           Y  G +        R 
Sbjct: 46  DFAAIKKKALATGASKAYIVDVTEEFITDYIFPTLKAGAVYEDDYLLGTSFA------RP 99

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +    L+ +  + GA  +A G
Sbjct: 100 LISKKLVEIAEKEGAVAIAHG 120


>gi|328952407|ref|YP_004369741.1| NAD+ synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328452731|gb|AEB08560.1| NAD+ synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 546

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + VV +SGG+DS+V   L ++  G + V+GV +                +   + D+ R+
Sbjct: 291 KAVVGLSGGIDSAVTCYLARQALGLENVLGVIM-----------PSLYSSPGSIADSERL 339

Query: 80  CDTINVSHYVFDYEERFR 97
            D + V          ++
Sbjct: 340 ADNLGVKTCTVPITPIYQ 357


>gi|317131154|ref|YP_004090468.1| argininosuccinate synthase [Ethanoligenens harbinense YUAN-3]
 gi|315469133|gb|ADU25737.1| argininosuccinate synthase [Ethanoligenens harbinense YUAN-3]
          Length = 404

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 27/132 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
            +VV+A SGG+D+S++   LK + G +VI            S   G       + + A++
Sbjct: 6   KKVVLAYSGGLDTSIIIPWLKENYGCEVIA----------MSADVGQGEELSGLEEKAKK 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
              +     Y+ D  + F    I P          Y  G +        R +    L+ +
Sbjct: 56  TGAS---KLYIEDLRKEFVEDCIWPTLKAGAKYEKYLLGTSFA------RPIIAKRLVEI 106

Query: 133 TRQLGADVLATG 144
            R+ GAD +A G
Sbjct: 107 ARKEGADAIAHG 118


>gi|302519571|ref|ZP_07271913.1| GMP synthase domain-containing protein [Streptomyces sp. SPB78]
 gi|302428466|gb|EFL00282.1| GMP synthase domain-containing protein [Streptomyces sp. SPB78]
          Length = 527

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   V
Sbjct: 223 KRAICGLSGGVDSAVAAALVQRAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
             T  V   V D  +RF +A+             G   +   +  +    ++  +     
Sbjct: 274 AAT-GVQLKVVDAADRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAE--NAADGA 330

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               L  G      +  G  G       +           +    +    +L  PL  + 
Sbjct: 331 DVAFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPEDLEFELIEPLRKLF 381

Query: 197 KESVRDLAREMGLD 210
           K+ VR + +E+GL 
Sbjct: 382 KDEVRAVGQELGLP 395


>gi|284162667|ref|YP_003401290.1| argininosuccinate synthase [Archaeoglobus profundus DSM 5631]
 gi|284012664|gb|ADB58617.1| argininosuccinate synthase [Archaeoglobus profundus DSM 5631]
          Length = 394

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 39/199 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV++ SGG+D++V   LLK   G+D VI VT+ +                +D+  A   
Sbjct: 3   KVVLSYSGGLDTTVAIFLLKEKYGFDEVITVTVDI------------GQPEEDIRKAEER 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                  HY  D ++ F  A++     +    E  +      R +    ++ V ++ GAD
Sbjct: 51  GKKYADKHYTVDAKKEFVEALMQ-LIKANGEYEGYVLGTALARPIIAEKVVEVAKKEGAD 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKK 197
            +A G                   C       DQ  F     Q     +  P+ +  + +
Sbjct: 110 AIAHG-------------------CTGK--GNDQLRFENVFYQYGF-RVIAPMRELNLTR 147

Query: 198 ESVRDLAREMGLDIADKSD 216
           E   + A+E G+++    +
Sbjct: 148 EWEIEYAKEKGIEVPATKE 166


>gi|239607252|gb|EEQ84239.1| argininosuccinate synthase [Ajellomyces dermatitidis ER-3]
          Length = 416

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RV +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKDRVCLAYSGGLDTSCILAWLIERGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
           R   +I  +   V D +  F   +              Y  G +        R V    +
Sbjct: 49  RKALSIGALKLVVSDLKREFVEDLCYRAIQCNAIWEDRYLLGTSLA------RPVIARAM 102

Query: 130 LSVTRQLGADVLATG 144
           +   ++ G   ++ G
Sbjct: 103 MRCAKEEGCIAVSHG 117


>gi|313158186|gb|EFR57591.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5]
          Length = 447

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 20/147 (13%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + EA R    D D    D R+++ +SGGVDS V+ +L  R GY V GV    +  R A
Sbjct: 1   MALLEAFRKYIADNDLATHDDRILLTVSGGVDSMVMLSLFTRSGYRV-GVAHCNFQLRGA 59

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              +      ++            V  Y     +RF  A             T       
Sbjct: 60  ESDEDEVLVEEE-------ARKYGVEFY----NKRFETA--------AEMERTGESMEMA 100

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYI 147
            R ++++   +++R+ G  V+A  H+ 
Sbjct: 101 ARRLRYAWFDALSREHGYTVVAIAHHA 127


>gi|312623408|ref|YP_004025021.1| exsb protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203875|gb|ADQ47202.1| exsB protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ VV +SGG+DS+ +   +K  GY+V  ++  LY               +++  A++ C
Sbjct: 1  MKAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LY----------GQKHSKELEFAKKTC 49

Query: 81 DTINVSHYVFDYE 93
            +++ H + D  
Sbjct: 50 SLLSIPHKIVDIS 62


>gi|300726241|ref|ZP_07059694.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Prevotella bryantii B14]
 gi|299776438|gb|EFI72995.1| argininosuccinate synthase (Citrulline--aspartateligase)
           [Prevotella bryantii B14]
          Length = 400

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 15/128 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VVVA SGG+D+S     L +DG+DV                       + +      
Sbjct: 3   KKKVVVAFSGGLDTSYTVMKLTQDGWDVYAA-----------CANTGGFNEEQLKVNEEN 51

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQL 136
              +  V +   D  + +    +              P    +  + F    +     ++
Sbjct: 52  AYKLGAVKYVTLDVTQEYYEKSLKYMIYGNVMRNNCYPISVSSERI-FQAIAIARYANEI 110

Query: 137 GADVLATG 144
            AD +A G
Sbjct: 111 QADAIAHG 118


>gi|301318274|gb|ADK67052.1| GMP synthase [Stenotrophomonas humi]
          Length = 184

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V     ++     ++G           + + D
Sbjct: 38  VILGLSGGVDSSVVAALLHKAIGDQLTCVF---VDTGLLRFQEGDQVM-------KMMAD 87

Query: 82  TINVSHYVFDYEERFRNA 99
            + V     +  +R+  A
Sbjct: 88  NMGVKVVRVNAADRYFKA 105


>gi|298491152|ref|YP_003721329.1| queuosine synthesis-like protein ['Nostoc azollae' 0708]
 gi|298233070|gb|ADI64206.1| Queuosine synthesis-like protein ['Nostoc azollae' 0708]
          Length = 273

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS++VA +     YD++G      +   A          +++ DA     TI
Sbjct: 21  LIAYSGGVDSTLVAKIA----YDLLG------DRALAVTAVSPSLLPEELADATAQAATI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            ++H +                       T  P   C  C   +    L  +  +LG   
Sbjct: 71  GIAHKIV------------QSHEMENLNYTSNPINRCYFCKSEL-HDTLNPLVLELGYSY 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KKE 198
           +  G      +   D    R  +    +                    R PL ++   K 
Sbjct: 118 VVDG------VNADDLHDYRPGIQAAKERG-----------------ARSPLAEIGVTKA 154

Query: 199 SVRDLAREMGLDIADKS 215
            VR L++++GL   DK 
Sbjct: 155 EVRQLSQQLGLPWWDKP 171


>gi|324517150|gb|ADY46738.1| Cytoplasmic tRNA 2-thiolation protein 1 [Ascaris suum]
          Length = 348

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 81/265 (30%), Gaps = 39/265 (14%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +  +V +  SGG DS+V+A LL      YD  GV L L +  +  +          +  
Sbjct: 46  KRGEKVAIGASGGKDSTVLAYLLNTLNKRYD-YGVELLLLSIDEGIQGY----RDDSLKA 100

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R      +      Y++ +             A   T   C  C    +   L     
Sbjct: 101 VERNRLQYGLPLTTLSYKDLYGWT-----MDEIVAKIGTKNNCTFCGVFRR-QALDRGAL 154

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+ L TGH                 + R       +   +   +   L   + PL  
Sbjct: 155 MLGANKLVTGHNADDMAE-----TVLMNLLRGDIARLQRCATIVTGSDDCLPRAK-PLKY 208

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQ------GKYFDVVKRINA----GIALEGD 244
             ++ +   A    LD      S +  +           +   ++RI       +   G+
Sbjct: 209 TLEKDIVMYAHFKKLDYF----STECIYAPNAYRGYARNFVKELERIRPRAILDLIRSGE 264

Query: 245 IVHLNGQILGRHNGIINYTIGQRRG 269
            + + G+I      +   T  +R G
Sbjct: 265 DLAIRGEI-----ALPTLTKCERCG 284


>gi|317503468|ref|ZP_07961505.1| GMP synthase [Prevotella salivae DSM 15606]
 gi|315665419|gb|EFV05049.1| GMP synthase [Prevotella salivae DSM 15606]
          Length = 514

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 41/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++ +SGGVDSSV A LL +     IG  L          RK        V +A   
Sbjct: 213 NDRVILGLSGGVDSSVCATLLNKA----IGDHLTCIFVDHGMLRKNE---FSKVMEAY-- 263

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQ 135
            + + +     D  E+F              G T     +  R +   D + V     ++
Sbjct: 264 -EGLGLHVIGVDASEKFFKD---------LEGVT---DPEQKRKIIGRDFVEVFNAEAKK 310

Query: 136 L-GADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +  A  LA G  +  R           +                +    ++    L  PL
Sbjct: 311 ITDAKWLAQGTIYPDRIESLSITGMTIKSHHN------------VGGLPEEMKLKLCEPL 358

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+G+ 
Sbjct: 359 QWLFKDEVRRVGYELGMP 376


>gi|326446717|ref|ZP_08221451.1| asparagine synthase, glutamine-hydrolyzing [Streptomyces
           clavuligerus ATCC 27064]
          Length = 655

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---ARRVCD 81
           V +SGG+DSSVVAAL +              +  +      +     D  +   AR V  
Sbjct: 264 VLLSGGLDSSVVAALAQE------------LSPGRPVPTFSAGFEDTDFDETPHARAVAR 311

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            +   H+V         AV+      YA  + PL  
Sbjct: 312 HLGTEHHVVRIGGAELAAVVE---QEYAHADEPLAD 344


>gi|300767720|ref|ZP_07077630.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494705|gb|EFK29863.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 521

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL +     IG  L          RKG      D   A  +
Sbjct: 226 DKKVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKG----EADQVMA-SL 276

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
                ++    D ++RF + +                 +  N  ++         +L G 
Sbjct: 277 EGKFGLNIIKVDAKDRFLSKLAGVSDPERKRK------IIGNEFIQV--FDEEATKLNGM 328

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LA G        V + G       +           +    +     L  PL  + K+
Sbjct: 329 EFLAQG---TLYTDVIESGTSTAQTIKSHHN-------VGGLPEDMQFKLIEPLRTLFKD 378

Query: 199 SVRDLAREMGLD 210
             R+L  ++G+ 
Sbjct: 379 EARELGEKLGMP 390


>gi|118497863|ref|YP_898913.1| NAD synthase [Francisella tularensis subsp. novicida U112]
 gi|194323836|ref|ZP_03057612.1| NAD+ synthetase [Francisella tularensis subsp. novicida FTE]
 gi|254374673|ref|ZP_04990154.1| hypothetical protein FTDG_00848 [Francisella novicida GA99-3548]
 gi|118423769|gb|ABK90159.1| NAD synthase [Francisella novicida U112]
 gi|151572392|gb|EDN38046.1| hypothetical protein FTDG_00848 [Francisella novicida GA99-3548]
 gi|194322200|gb|EDX19682.1| NAD+ synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 249

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 33  VIGLSGGIDSAVAASLAVKTGLPTTALIL-----------PSDNNQHQDMQDALDLIEML 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +                +  N    ++   L +  +Q      
Sbjct: 82  NIEHYTISIQPAY-EAFLASTQRFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY----- 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 136 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 176 ELGKYLDVP 184


>gi|113478065|ref|YP_724126.1| hypothetical protein Tery_4689 [Trichodesmium erythraeum IMS101]
 gi|110169113|gb|ABG53653.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 281

 Score = 50.5 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 70/213 (32%), Gaps = 47/213 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + ++A SGG+DS++VA +     YD++G      +   A          +D+ DAR    
Sbjct: 18  KALIAYSGGIDSTLVAKVA----YDILG------DKALAITAVSPSLLPEDLEDARIQAA 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I +SH      E                      C  C   +    L  +  + G   +
Sbjct: 68  VIGISHEEVKTNEMENKNYTSNPI---------NRCYFCKSEL-HDTLKPLALKRGYFYV 117

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      +   D    R  +    +                    R PL +  + K  
Sbjct: 118 LDG------VNADDLRDYRPGIQAAKERG-----------------ARSPLAEVGISKFE 154

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232
           VR LA+++ L   DK  SQ  C   +  Y + +
Sbjct: 155 VRQLAKDLDLPWWDKP-SQP-CLSSRFPYGEEI 185


>gi|308061680|gb|ADO03568.1| NAD synthetase [Helicobacter pylori Cuz20]
          Length = 260

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSVSMPESKTDALNLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       +A+        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|294817815|ref|ZP_06776457.1| Moenomycin biosynthesis protein MoeF5 [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322630|gb|EFG04765.1| Moenomycin biosynthesis protein MoeF5 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 637

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---ARRVCD 81
           V +SGG+DSSVVAAL +              +  +      +     D  +   AR V  
Sbjct: 264 VLLSGGLDSSVVAALAQE------------LSPGRPVPTFSAGFEDTDFDETPHARAVAR 311

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            +   H+V         AV+      YA  + PL  
Sbjct: 312 HLGTEHHVVRIGGAELAAVVE---QEYAHADEPLAD 344


>gi|169840107|ref|ZP_02873295.1| hypothetical protein cdivTM_23734 [candidate division TM7
          single-cell isolate TM7a]
          Length = 69

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 15/72 (20%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          K+ + VV +SGG DSSVVAAL     G  +VIGV +           KG      D+  +
Sbjct: 10 KNCKAVVGISGGTDSSVVAALCVAALGRKNVIGVLM----------PKGM---QHDIDYS 56

Query: 77 RRVCDTINVSHY 88
          +++ D + + HY
Sbjct: 57 KKLVDFLKIKHY 68


>gi|197117472|ref|YP_002137899.1| NAD synthetase [Geobacter bemidjiensis Bem]
 gi|197086832|gb|ACH38103.1| NAD+ synthetase [Geobacter bemidjiensis Bem]
          Length = 328

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 64/216 (29%), Gaps = 44/216 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVA+SGG+DSSV AAL  R  G + VIG+ +            G            ++  
Sbjct: 40  VVALSGGIDSSVTAALAVRAIGKERVIGLEM------PERHSSGESQKLSG-----KLAA 88

Query: 82  TINVS---------HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLS 131
            + +                  ++  AV       Y  G      +  N     F+    
Sbjct: 89  ALGIETVLEEISAALEAVGCYRKYDEAV-RMVVPGYGEGWKSKIVISNNMEHPGFTSFYL 147

Query: 132 VTRQ--LGADVL------------ATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQS 174
           V +    G   +            AT    R R  +      R          R   DQ 
Sbjct: 148 VAQDGAQGTTRVRLPFKPYLQIVAATNFKQRIRKMLEYYHADRLNFAVAGTPNRLEYDQG 207

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +F+             P+  + K  V  LA  +G+ 
Sbjct: 208 FFV-KLGDGAAD--IKPIAHLYKSQVYQLAEYLGVP 240


>gi|87300929|ref|ZP_01083771.1| hypothetical protein WH5701_05755 [Synechococcus sp. WH 5701]
 gi|87284800|gb|EAQ76752.1| hypothetical protein WH5701_05755 [Synechococcus sp. WH 5701]
          Length = 302

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 77/210 (36%), Gaps = 56/210 (26%)

Query: 13  DLDKNPKDM-RVVVAMSGGVDSSVVAALLKRD---GYD-VIGVTLQLYNSRKASKRKGSC 67
            L +N ++M  V+VA SGGVDS++VAA+       G + V GV+  L             
Sbjct: 23  QLRQNFREMGAVLVAYSGGVDSALVAAIASEQLGAGAEAVTGVSPAL------------- 69

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            A   +++AR     + + H      E        P   +Y++  T   C  C R +   
Sbjct: 70  -APHLLWEARSQAAWMGIRHREVATRELE-----DP---AYSSNPTD-RCYACKREL-HG 118

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L   +   G   +  G      +   D G  R  +    +                   
Sbjct: 119 LL--ASLTGGVSQVLDG------VNRDDLGDHRPGIRAAREQG----------------- 153

Query: 188 LRFPLGD--MKKESVRDLAREMGLDIADKS 215
           +R PL +  + K +VR ++R +G    DK 
Sbjct: 154 VRSPLAEQGLDKSAVRQISRALGFPWWDKP 183


>gi|315167394|gb|EFU11411.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX1341]
          Length = 278

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQVKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|308179905|ref|YP_003924033.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045396|gb|ADN97939.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 518

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL +     IG  L          RKG      D   A  +
Sbjct: 223 DKKVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKG----EADQVMA-SL 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
                ++    D ++RF + +                 +  N  ++         +L G 
Sbjct: 274 EGKFGLNIIKVDAKDRFLSKLAGVSDPERKRK------IIGNEFIQV--FDEEATKLNGM 325

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LA G        V + G       +           +    +     L  PL  + K+
Sbjct: 326 EFLAQG---TLYTDVIESGTSTAQTIKSHHN-------VGGLPEDMQFKLIEPLRTLFKD 375

Query: 199 SVRDLAREMGLD 210
             R+L  ++G+ 
Sbjct: 376 EARELGEKLGMP 387


>gi|257419554|ref|ZP_05596548.1| hypothetical protein EFMG_00667 [Enterococcus faecalis T11]
 gi|257161382|gb|EEU91342.1| hypothetical protein EFMG_00667 [Enterococcus faecalis T11]
          Length = 278

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 50/204 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  ++ VA SGG+DSS    LLK+     G + V+ V   + NS   S  +         
Sbjct: 17  KMDKLAVAYSGGIDSS---YLLKKALDTLGAENVLAV---VVNSELFSDDE--------F 62

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A  + + +  +    +  E   + ++            P      ++ + +  + S  
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIV---------ANNPNS-WFYSKKLLYKTIRSAI 112

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++ G DVLA G        + DD    R   R     RDQ   +    Q +L        
Sbjct: 113 QKEGFDVLADG-------MIMDDNTDFRPGLRA----RDQEGVISPLQQVKL-------- 153

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              K  +R LA++ G+    K  S
Sbjct: 154 --YKIEIRQLAKDAGISNWSKVAS 175


>gi|296822020|ref|XP_002850217.1| argininosuccinate synthetase [Arthroderma otae CBS 113480]
 gi|238837771|gb|EEQ27433.1| argininosuccinate synthetase [Arthroderma otae CBS 113480]
          Length = 412

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 16/124 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S + A L   G++V+                      +D  +A R   
Sbjct: 6   KVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAERKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            +      V D ++ F   +        A  E     +   R V    ++ V +Q G   
Sbjct: 53  AVGAKKLVVEDLKKEFVEDLCFKAIQCNAIWEDRY--LLGARPVIARAMMRVAQQEGCTA 110

Query: 141 LATG 144
           ++ G
Sbjct: 111 VSHG 114


>gi|281415680|ref|ZP_06247422.1| GMP synthase (glutamine-hydrolyzing) [Micrococcus luteus NCTC 2665]
          Length = 539

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 42/205 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V +     R+    +     G+    AR 
Sbjct: 231 DKRAICGLSGGVDSAVAAALVQRAIGDRLTCVYVDHGLMREGESAEIEQAFGEAHGGARL 290

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         + D  E F +A          AG T     +  R +     +    +  A
Sbjct: 291 V---------MVDAREDFLSA---------LAGVT---DPEAKRKIIGERFIRTFEKAQA 329

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM-----------DLERD--QSYFLFATTQQQL 185
           D++              D    R + +             D   +  +   +        
Sbjct: 330 DIVL-------ESEHDPDATEVRFLVQGTLYPDVVESGGGDGAANIKRHGNVGGLPDDIE 382

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
            +L  PL ++ K+ VR +  E+GL 
Sbjct: 383 FELCEPLRELFKDEVRAVGAELGLP 407


>gi|257466980|ref|ZP_05631291.1| GMP synthase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918119|ref|ZP_07914359.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691994|gb|EFS28829.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 512

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 38/198 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDSSV A L+ R     IG  +T    ++    K +          +  
Sbjct: 215 DKKVILGLSGGVDSSVAATLIHRA----IGDQLTCIFVDTGLLRKNEAKTVMEVYSEN-- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
                +N+     D EERF + +                 +     +         ++  
Sbjct: 269 ---FHMNIKC--VDAEERFLSKLKGVSDPEQKRK------IIGKEFI--EVFNEEAKKFE 315

Query: 137 GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            A+ LA        I S    G     +                +    +     L  PL
Sbjct: 316 DAEFLAQGTIYPDVIESVSVKGPSVTIKSHHN------------VGGLPEDMKFQLLEPL 363

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR++ R++G+ 
Sbjct: 364 RELFKDEVREVGRQLGIP 381


>gi|255560303|ref|XP_002521168.1| argininosuccinate synthase, putative [Ricinus communis]
 gi|223539615|gb|EEF41199.1| argininosuccinate synthase, putative [Ricinus communis]
          Length = 492

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        ++   A   C
Sbjct: 96  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGLKELEGLEEKAKASGAC 149

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 150 Q-----LVVKDLQEEFVRDYIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDVA 198

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 199 KEVGADAVAHG 209


>gi|251794871|ref|YP_003009602.1| GMP synthase, large subunit [Paenibacillus sp. JDR-2]
 gi|247542497|gb|ACS99515.1| GMP synthase, large subunit [Paenibacillus sp. JDR-2]
          Length = 511

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+  +SGGVDSSVVA L+ +     IG  +T    +     K +        V    
Sbjct: 216 DRKVLCGLSGGVDSSVVAMLIHKA----IGDQLTCMFIDHGMLRKDEAESVMETFVG--- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                 ++     D  ERF   +                 +  N  +        + +LG
Sbjct: 269 ----KFDMKVVKIDASERFLGKLKGVTDPEQKRK------IIGNEFIYV--FDEESAKLG 316

Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             D LA G        + + G       +           +    +    +L  PL  + 
Sbjct: 317 EFDFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMKFELVEPLKTLF 366

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E GL 
Sbjct: 367 KDEVRKVGAECGLP 380


>gi|16330497|ref|NP_441225.1| hypothetical protein slr1717 [Synechocystis sp. PCC 6803]
 gi|2829609|sp|P73846|Y1717_SYNY3 RecName: Full=Uncharacterized protein slr1717
 gi|1652988|dbj|BAA17905.1| slr1717 [Synechocystis sp. PCC 6803]
          Length = 268

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 51/199 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++A SGGVDS++VA +     YDV+G       +  A          +++ DA+    
Sbjct: 18  RALIAYSGGVDSTLVAKVA----YDVLG------QNAVAITAVSPSLLPEELEDAQAQAQ 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGA 138
            I ++H +                       T  P   C  C   +    L  +   LG 
Sbjct: 68  WIGIAHELV------------QTNEMANPNYTANPENRCYFCKSEL-HDTLQPLALALGY 114

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
           + +  G         GDD +  R   +       +S                PL +  + 
Sbjct: 115 NYVIDG-------VNGDDLRDYRPGIQAAKERGGRS----------------PLAELQIS 151

Query: 197 KESVRDLAREMGLDIADKS 215
           K  VR +++ +GL   DK 
Sbjct: 152 KLEVRQISQLLGLPWWDKP 170


>gi|301091051|ref|XP_002895718.1| GMP synthase [glutamine-hydrolyzing], putative [Phytophthora
           infestans T30-4]
 gi|262097036|gb|EEY55088.1| GMP synthase [glutamine-hydrolyzing], putative [Phytophthora
           infestans T30-4]
          Length = 528

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 64/199 (32%), Gaps = 39/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V+ A+SGGVDSSV A LL+R  G     V +            G     +      R
Sbjct: 230 EGHVIGAVSGGVDSSVAAVLLQRALGDRFHAVLIDN----------GLLRKDEATEVVDR 279

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLSVTRQLG 137
           +   + ++    D  +RF  A           G T P         +          ++G
Sbjct: 280 LQSKLGINLKCIDASDRFLAA---------LKGVTEPESKRKTIGNLFIELFQEEAERIG 330

Query: 138 --ADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              D L         I S  Y G     +         E+                L  P
Sbjct: 331 HPVDFLLQGTLYPDVIESISYKGPSATIKTHHNVGGLPEKMH------------LKLIEP 378

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR+L   +G+D
Sbjct: 379 LRELFKDEVRELGMALGID 397


>gi|56417196|ref|YP_154270.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Anaplasma marginale str. St. Maries]
 gi|254995365|ref|ZP_05277555.1| GMP synthase [Anaplasma marginale str. Mississippi]
 gi|255003551|ref|ZP_05278515.1| GMP synthase [Anaplasma marginale str. Puerto Rico]
 gi|81358841|sp|Q5P9L5|GUAA_ANAMM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56388428|gb|AAV87015.1| GMP synthase (glutamine-hydrolyzing) [Anaplasma marginale str. St.
           Maries]
          Length = 529

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 68/200 (34%), Gaps = 39/200 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV A+SGGVDSSV + L+ +  G  ++ V            RKG     +D++    
Sbjct: 224 GGRVVAAISGGVDSSVASVLVHKAIGERLVCVF-----VDTGLLRKGEAGVVRDLF---- 274

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +N+   V D    F      V  P       GET +                  + 
Sbjct: 275 -VGKLNMHVNVLDKSALFMQRLAGVQDPEVKRKIIGETFIEV-----------FEQEAKS 322

Query: 136 LGADVLA---TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           LG        T +       VG+ G + +               +    +     L  PL
Sbjct: 323 LGDIKFLMQGTIYPDVIESGVGESGTKIKSHHN-----------VGGLPEIMNLSLVEPL 371

Query: 193 GDMKKESVRDLAREMGLDIA 212
             + K+ VR L +E+GL  A
Sbjct: 372 RHLFKDEVRLLGKELGLPSA 391


>gi|318058801|ref|ZP_07977524.1| GMP synthase [Streptomyces sp. SA3_actG]
          Length = 527

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   V
Sbjct: 223 KRAICGLSGGVDSAVAAALVQRAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
             T  V   V D  +RF +A+             G   +   +  +    ++  +     
Sbjct: 274 AAT-GVQLKVVDAADRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAE--NAADGA 330

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               L  G      +  G  G       +           +    +    +L  PL  + 
Sbjct: 331 DVAFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPEDLEFELIEPLRKLF 381

Query: 197 KESVRDLAREMGLD 210
           K+ VR + +E+GL 
Sbjct: 382 KDEVRAVGQELGLP 395


>gi|289548105|ref|YP_003473093.1| GMP synthase, large subunit [Thermocrinis albus DSM 14484]
 gi|289181722|gb|ADC88966.1| GMP synthase, large subunit [Thermocrinis albus DSM 14484]
          Length = 508

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V+ A+SGGVDS+V A L  R     +G      +  +            ++     
Sbjct: 213 KGRKVISALSGGVDSTVAAVLTHRA----VG------DLLECVFVDHGLLRKGELEQVTE 262

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +N+   V    + F      V  P       G T +                   +
Sbjct: 263 AFRKMNLPFRVVSAGKLFLERLRGVEDPEEKRRIIGHTFIEV-----------FEKEAEK 311

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA +L  G        V   G     + +           +    ++   +L  PL DM
Sbjct: 312 IGAQLLLQGTLY--PDVVESAGIAGSQVIKSHHN-------VGGLPEKMNLELLEPLRDM 362

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L + +G+ 
Sbjct: 363 FKDEVRQLGKLLGIP 377


>gi|318075485|ref|ZP_07982817.1| GMP synthase [Streptomyces sp. SA3_actF]
          Length = 529

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   V
Sbjct: 225 KRAICGLSGGVDSAVAAALVQRAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 275

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
             T  V   V D  +RF +A+             G   +   +  +    ++  +     
Sbjct: 276 AAT-GVQLKVVDAADRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAE--NAADGA 332

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               L  G      +  G  G       +           +    +    +L  PL  + 
Sbjct: 333 DVAFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPEDLEFELIEPLRKLF 383

Query: 197 KESVRDLAREMGLD 210
           K+ VR + +E+GL 
Sbjct: 384 KDEVRAVGQELGLP 397


>gi|294792727|ref|ZP_06757874.1| argininosuccinate synthase [Veillonella sp. 6_1_27]
 gi|294456626|gb|EFG24989.1| argininosuccinate synthase [Veillonella sp. 6_1_27]
          Length = 403

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +VI V + L         +             
Sbjct: 3   KANKVVLAYSGGLDTSVIIPWLKENYGAEVIAVCVDLGQPEDYDAVEKKAIKSGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D +E F    + P           Y  G +   P +          L
Sbjct: 61  ----------YIVDAKEEFVKDYVWPTVKAGAIYEGKYLLGTSFARPLIG-------KIL 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++ GAD +A G
Sbjct: 104 VDIAKKEGADAIAHG 118


>gi|282849809|ref|ZP_06259193.1| argininosuccinate synthase [Veillonella parvula ATCC 17745]
 gi|282580746|gb|EFB86145.1| argininosuccinate synthase [Veillonella parvula ATCC 17745]
          Length = 403

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +VI V + L         +             
Sbjct: 3   KANKVVLAYSGGLDTSVIIPWLKENYGAEVIAVCVDLGQPEDYDAVEKKAIKSGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D +E F    + P           Y  G +   P +          L
Sbjct: 61  ----------YIVDAKEEFVKDYVWPTVKAGAIYEGKYLLGTSFARPLIG-------KIL 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++ GAD +A G
Sbjct: 104 VDIAKKEGADAIAHG 118


>gi|251781032|ref|ZP_04823952.1| ExsB family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085347|gb|EES51237.1| ExsB family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 239

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL---KR---DGYDVIGVTLQLYNSRKASKRKGS 66
           D D      ++ V +SGG DS  +  LL   K+     +++I +TL   N          
Sbjct: 14  DFDMIQDGDKIAVGLSGGKDSLTLLHLLNTYKKFSPQKFELIAITL---NPGGVDNSPLY 70

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                       +C+ + V  Y    +   +  V           +   PC  C   ++ 
Sbjct: 71  T-----------LCENLEVPFYEI--QTDIKKIVFD-------LRKEKNPCSLC-ANLRR 109

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L      LG + +A GH+
Sbjct: 110 GALHHSAENLGCNKVALGHH 129


>gi|255575811|ref|XP_002528804.1| argininosuccinate synthase, putative [Ricinus communis]
 gi|223531757|gb|EEF33577.1| argininosuccinate synthase, putative [Ricinus communis]
          Length = 490

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        ++   A   C
Sbjct: 94  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGLKELEGLEEKAKASGAC 147

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 148 Q-----LVVKDLQEEFVRDYIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDVA 196

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 197 KEVGADAVAHG 207


>gi|28377744|ref|NP_784636.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus plantarum WCFS1]
 gi|254555928|ref|YP_003062345.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus plantarum JDM1]
 gi|38257526|sp|Q88Y74|GUAA_LACPL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28270577|emb|CAD63481.1| GMP synthase (glutamine-hydrolysing) [Lactobacillus plantarum
           WCFS1]
 gi|254044855|gb|ACT61648.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus plantarum JDM1]
          Length = 518

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D +V++ +SGGVDSSVV  LL +     IG  L          RKG      D   A  +
Sbjct: 223 DKKVLLGLSGGVDSSVVGVLLHKA----IGTQLTSIFVDHGLLRKG----EADQVMA-SL 273

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
                ++    D ++RF + +                 +  N  ++         +L G 
Sbjct: 274 EGKFGLNIIKVDAKDRFLSKLAGVSDPERKRK------IIGNEFIQV--FDEEATKLNGM 325

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + LA G        V + G       +           +    +     L  PL  + K+
Sbjct: 326 EFLAQG---TLYTDVIESGTSTAQTIKSHHN-------VGGLPEDMQFKLIEPLRTLFKD 375

Query: 199 SVRDLAREMGLD 210
             R+L  ++G+ 
Sbjct: 376 EARELGEKLGMP 387


>gi|262306101|gb|ACY45643.1| gln amidotransferase [Scutigera coleoptrata]
          Length = 197

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   D  VI V +     RK   R+               
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALKDDQVIAVHIDNGFMRKNESRQVEQSLS--------- 95

Query: 80  CDTINVSHYVFDYEERF 96
              I +   V +    F
Sbjct: 96  --KIGLKLKVVNASHAF 110


>gi|298529721|ref|ZP_07017124.1| GMP synthase, large subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511157|gb|EFI35060.1| GMP synthase, large subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 516

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYD 75
           P D +VV  +SGG+DS+VVA LL +     IG  +   L ++       G     + +  
Sbjct: 217 PDDEQVVCGLSGGIDSTVVAVLLHKA----IGKRLHCILVDN-------GVLRHNEALEV 265

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              +    +++    + ++ F +    V  P       G T +                 
Sbjct: 266 VESLTKHFDLNLKHVEAQDLFLSRLHGVKDPEEKRKIIGHTFIEV-----------FEKE 314

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            + +     LA G  +   +      K    + +           +    ++    L  P
Sbjct: 315 AKSIPDVKWLAQG-TLYPDVIESVSFKGPSAVIKSHHN-------VGGLPEKMDLKLVEP 366

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR +A E+G+ 
Sbjct: 367 LRELFKDEVRKVAVELGIP 385


>gi|199594514|gb|ACH90721.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVIRVNAADRY 102


>gi|157414337|ref|YP_001481593.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|166218758|sp|A8FJH9|QUEC_CAMJ8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|157385301|gb|ABV51616.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315931290|gb|EFV10259.1| 7-cyano-7-deazaguanine synthase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 224

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 79/203 (38%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEQRTQEKERECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKF-----SDLLSV- 132
             + V   Y+ D    F   +     +  +        C+     + +        LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCISDTPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVYIK 162

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL  + K  + +LA +  + + 
Sbjct: 163 TPLVRLNKAKIVELALKENVPLE 185


>gi|56419510|ref|YP_146828.1| aluminum resistance protein [Geobacillus kaustophilus HTA426]
 gi|56379352|dbj|BAD75260.1| aluminum resistance protein [Geobacillus kaustophilus HTA426]
          Length = 224

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 26/199 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K  ++  VVV  SGG DS+      K+   +V  VT   ++  +  +R+        +
Sbjct: 1   MMKMNEEKAVVV-FSGGQDSTTCLFWAKKQFGEVEAVT---FDYGQRHRRE--------I 48

Query: 74  YDARRVCDTINVSHYVFDYEERFR---NAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDL 129
             A+ + D + V H V D     +   NA+     +     GE P   VD    +  S  
Sbjct: 49  DVAQAIADELGVRHTVLDLSLLGQLAPNALTRRDIAIEQKKGELPTTFVDGRNLLFLSFA 108

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               +Q GA  + TG           D       CR + ++        A   + +    
Sbjct: 109 AVFAKQRGARHIVTG-------VCETDFSGYPD-CRDVFIKSLNVTLNLAMDYEFVIHT- 159

Query: 190 FPLGDMKKESVRDLAREMG 208
            PL  + K     LA E+G
Sbjct: 160 -PLMWLTKAETWKLADELG 177


>gi|262306001|gb|ACY45593.1| gln amidotransferase [Aphonopelma chalcodes]
          Length = 197

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + K   + +V++ +SGGVDS+V AALL R      VI + +     RK    +       
Sbjct: 37  IKKIIGNSKVLMLVSGGVDSTVCAALLHRALQADQVIAIHIDNGFMRKNESFQVETSL-- 94

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRN 98
                      + +   V +  + F N
Sbjct: 95  ---------KKLGLQLKVLNACQSFYN 112


>gi|193215470|ref|YP_001996669.1| NAD synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|193088947|gb|ACF14222.1| NAD+ synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 273

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 48/197 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RVV+ +SGG+DS+V  +L  K  G + V+ V +                    +  A  
Sbjct: 27  KRVVLGLSGGIDSAVSCSLATKALGKENVLAVMM-----------PYKTSNPDSLNHATL 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +   V +         I PF  +Y      +P     R     ++++  R +  
Sbjct: 76  LVKQLGIGSEVAE---------ITPFVDAYFKQ---VPDASNLRK---GNIMARARMM-- 118

Query: 139 DVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                    R + L VG   K   ++              + T    +     P+GD+ K
Sbjct: 119 --TLYDISARDAALVVGTSNKTELLL-------------GYGTLFGDMASAINPIGDLYK 163

Query: 198 ESVRDLAREMGLDIADK 214
             +  LAR   L++ + 
Sbjct: 164 THIWALAR--HLEVPEP 178


>gi|20807962|ref|NP_623133.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20516534|gb|AAM24737.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 235

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 75/239 (31%), Gaps = 47/239 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS---SVVAALLKRDG---YDVIGVTLQLYNSRKASKRKGS 66
           D +   +   + V +SGG DS        LLKR     ++V+G+ L L            
Sbjct: 14  DFEMIQEGDAIAVGVSGGKDSITLLYGLHLLKRFYPIKFEVMGLMLSLGFEN-------- 65

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                D    +  C+   +  +V       +  V               PC  C   ++ 
Sbjct: 66  ----FDPTPIKNFCEEKGIPFFVK--HTEIKKIVFDYRKEK-------NPCSLC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHY---IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
             L    ++ G + +A  H+   +     +      R     P+    D+S         
Sbjct: 112 GALNDFAKEKGCNKVALAHHYDDLIVTFMMNLFYNGRLHTFEPVTFL-DRSKIT------ 164

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
               L  PL  ++++ VR   ++  L + +       C +        ++ +   +  E
Sbjct: 165 ----LIRPLIYVREKEVRSAVKKNNLPVVENP-----CPMAGNTTRHSIENLIRNLEKE 214


>gi|301318308|gb|ADK67069.1| GMP synthase [Stenotrophomonas chelatiphaga]
          Length = 184

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSVVAALL +  G  +  V                     D   A    +
Sbjct: 38  VILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF-AE 87

Query: 82  TINVSHYVFDYEERF 96
            + V     +  +R+
Sbjct: 88  HMGVKVIRVNAADRY 102


>gi|258651487|ref|YP_003200643.1| GMP synthase large subunit [Nakamurella multipartita DSM 44233]
 gi|258554712|gb|ACV77654.1| GMP synthase, large subunit [Nakamurella multipartita DSM 44233]
          Length = 523

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 62/205 (30%), Gaps = 41/205 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDS+V AAL+ +  G  +  V     +       +              V 
Sbjct: 224 KVICALSGGVDSAVAAALVHQAVGDQLTCVF---VDHGLLRAGEREQVERDY------VA 274

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-------- 132
            T  +     D E+RF  A            ET        R +   + + V        
Sbjct: 275 AT-GIHLVTVDAEQRFLAA-----LDGITEPETK-------RKIIGREFIRVFETAAAEI 321

Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
              + G   L  G      +  G  G       +           +          L  P
Sbjct: 322 NAAEGGVKFLVQGTLYPDVVESG--GGTGTATIKSHHN-------VGGLPDDLQFQLVEP 372

Query: 192 LGDMKKESVRDLAREMGLDIADKSD 216
           L  + K+ VR L  E+GL  A    
Sbjct: 373 LRALFKDEVRALGAELGLPAAMVKR 397


>gi|116195190|ref|XP_001223407.1| hypothetical protein CHGG_04193 [Chaetomium globosum CBS 148.51]
 gi|88180106|gb|EAQ87574.1| hypothetical protein CHGG_04193 [Chaetomium globosum CBS 148.51]
          Length = 438

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 24/111 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+K      IG   + +     +         Q   D   
Sbjct: 222 EKGQVLAAISGGVDSTVAAKLMKEA----IGS--RFWAVLVNNGVMRLNECEQVKKD--- 272

Query: 79  VCDTINVSHYVFDYEERFRN--------AVIVP------FASSYAAGETPL 115
           + + + ++  V +  +RF +         V  P      F    AA   P 
Sbjct: 273 LTEALGINLTVVEASDRFLDGLKGIDDPEVFRPPPHYYVFIEE-AAANDPA 322


>gi|325958352|ref|YP_004289818.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methanobacterium sp. AL-21]
 gi|325329784|gb|ADZ08846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methanobacterium sp. AL-21]
          Length = 363

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 28/136 (20%)

Query: 19  KDMRVVVAMSGGVDSS---VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           KD + +VA+SGGVDSS   +VA LL   G++ + VT                       +
Sbjct: 164 KDHKAIVALSGGVDSSFSLIVAKLL---GFNPVAVT---------VDPGSIILPSYFKKN 211

Query: 76  ARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              +   +NV H     +  E     VI              PC  C++T++   LL   
Sbjct: 212 INGLTSKLNVPHEYLPVNMGE-----VIENSLEGKIH-----PCGKCSKTIE-DSLLEYA 260

Query: 134 RQLGADVLATGHYIRS 149
            +     +  G ++ +
Sbjct: 261 EKSEIPFIIFGDFLAT 276


>gi|319779509|ref|YP_004130422.1| Argininosuccinate synthase [Taylorella equigenitalis MCE9]
 gi|317109533|gb|ADU92279.1| Argininosuccinate synthase [Taylorella equigenitalis MCE9]
          Length = 406

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 28/136 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGG+D+SV+   L+   Y+   +T                  G+++  AR 
Sbjct: 3   EYKKVVLAYSGGLDTSVILKWLQDT-YNCEVITF-----------TADIGQGEELEPARA 50

Query: 79  VCDTINV-SHYVF--DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
                 +   ++F  D +E F    + P           Y  G +    +   R +    
Sbjct: 51  KALKFGIKPEHIFIDDLKEEFVKDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI---- 106

Query: 129 LLSVTRQLGADVLATG 144
              + +Q+GAD ++ G
Sbjct: 107 --EIAKQVGADAVSHG 120


>gi|313201356|ref|YP_004040014.1| argininosuccinate synthase [Methylovorus sp. MP688]
 gi|312440672|gb|ADQ84778.1| argininosuccinate synthase [Methylovorus sp. MP688]
          Length = 407

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPAREKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  KKFGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIDI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|312622161|ref|YP_004023774.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202628|gb|ADQ45955.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 267

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 85/246 (34%), Gaps = 56/246 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDV-----IGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V+VA SGGVDS+    LLK   +DV     IGV                    ++  DA 
Sbjct: 23  VLVAFSGGVDST---FLLKVS-FDVLGKKAIGVF-----------SSSVLSPQREKEDAA 67

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++   I     V +  + F N     F          L C  C       DL+   + L 
Sbjct: 68  KLAKDIGARLIVIE-RDVFSNK---DFMK-----NDRLRCYYCK-----KDLIKRLKVLK 113

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            ++          L    +G     +       +       A  ++ +    F   ++ K
Sbjct: 114 EEL---------NLNEIVEGSNIDDLQDFRPGRK-------ALEEEGIKSPLF-EAELTK 156

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNG--QILG 254
           E +R L++E+GL    K  S   C V +  Y D +       I    D +   G  Q+  
Sbjct: 157 EEIRYLSKELGLSTYKKHSS--ACLVTRIPYGDEITLEKLQMIEKAEDFLVQKGFSQVRV 214

Query: 255 RHNGII 260
           RH+G I
Sbjct: 215 RHHGAI 220


>gi|304383098|ref|ZP_07365573.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Prevotella marshii DSM 16973]
 gi|304335784|gb|EFM02039.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Prevotella marshii DSM 16973]
          Length = 444

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 14/77 (18%)

Query: 19 KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVT--LQLYNSRKASKRKGSCCAGQDVYD 75
          K+ + +VA+SGG DS V    LL R  Y +  V    +L    +A + +  C        
Sbjct: 18 KEGKYLVALSGGADS-VALLFLLNRLHYHLEAVHCNFKL-RGEEADRDEAFC-------- 67

Query: 76 ARRVCDTINVSHYVFDY 92
           +++C ++N+  +   +
Sbjct: 68 -QKLCRSLNIPFHTVHF 83


>gi|262306109|gb|ACY45647.1| gln amidotransferase [Stenochrus portoricensis]
          Length = 196

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI + +     RK    +               
Sbjct: 45  KVLMLLSGGVDSTVCAALLHKALKEDQVIAIHINNGFMRKNESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
              + +   V D    F N
Sbjct: 95  -KRLGLKLKVIDSSHTFYN 112


>gi|182416846|ref|ZP_02948232.1| ExsB protein [Clostridium butyricum 5521]
 gi|237669043|ref|ZP_04529027.1| ExsB protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379308|gb|EDT76807.1| ExsB protein [Clostridium butyricum 5521]
 gi|237657391|gb|EEP54947.1| ExsB protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 218

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 30/196 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + VV  SGG DS+           +VI VT   +N  +  K +  C        A+ +
Sbjct: 2   NKKAVVVFSGGQDSTTCLFWALEQFDEVIAVT---FNYNQKHKLEIEC--------AKSI 50

Query: 80  CDTINVSHYVFD--YEERFRNAVIVPFASSYAAGETPLP----CVDCNR-TVKFSDLLSV 132
              + V H++ D     +     +         GE   P        N   + F+ +L  
Sbjct: 51  AKELGVEHHILDMGLLNQLAPNALTRDDIEIKMGENGEPPSTFVEGRNMLFLTFAGVL-- 108

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +  GA  + TG           D       CR + ++        A   + +     PL
Sbjct: 109 AKVKGAKHIVTG-------VCETDFSGYPD-CRDVFVKSLNVTMNLAMDYEFVVHT--PL 158

Query: 193 GDMKKESVRDLAREMG 208
             + K     +A + G
Sbjct: 159 MWIDKAETWKMADDFG 174


>gi|262341240|ref|YP_003284095.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272577|gb|ACY40485.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 511

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 32/191 (16%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +  SGGVDS V A ++ +     IG      +S             ++      +C  +N
Sbjct: 217 LGFSGGVDSFVTAYIIHKA----IG------SSLNCIFVDTGLLLKKERERISLLCKKMN 266

Query: 85  VSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +   + D + RF +    VI P       GE  +          F       +    + L
Sbjct: 267 LPIQIIDAKNRFLSRLTGVIDPEMKRKIIGEEFISV--------FQKESEKIQD--VEFL 316

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL--CDLRFPLGDMKKES 199
           A G      +    +  +     +           +            L  PL ++ K+ 
Sbjct: 317 AQGTIYSDIIESSSNKNQLSDSIKSHHN-------VGGLPHPTFMKLKLIEPLKELFKDE 369

Query: 200 VRDLAREMGLD 210
           VR + +++GL 
Sbjct: 370 VRKIGKKLGLP 380


>gi|254779599|ref|YP_003057705.1| GMP synthase [Helicobacter pylori B38]
 gi|254001511|emb|CAX29529.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Helicobacter pylori B38]
          Length = 508

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+ VR L +E+G
Sbjct: 358 PLRELFKDEVRLLGKELG 375


>gi|269798624|ref|YP_003312524.1| argininosuccinate synthase [Veillonella parvula DSM 2008]
 gi|294794479|ref|ZP_06759615.1| argininosuccinate synthase [Veillonella sp. 3_1_44]
 gi|269095253|gb|ACZ25244.1| argininosuccinate synthase [Veillonella parvula DSM 2008]
 gi|294454809|gb|EFG23182.1| argininosuccinate synthase [Veillonella sp. 3_1_44]
          Length = 403

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +VI V + L         +             
Sbjct: 3   KANKVVLAYSGGLDTSVIIPWLKENYGAEVIAVCVDLGQPEDYDAVEKKAIKSGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D +E F    + P           Y  G +   P +          L
Sbjct: 61  ----------YIVDAKEEFVKDYVWPTVKAGAIYEGKYLLGTSFARPLIG-------KIL 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++ GAD +A G
Sbjct: 104 VDIAKKEGADAIAHG 118


>gi|312888854|ref|ZP_07748417.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311298729|gb|EFQ75835.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 445

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 34/135 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ R++VA+SGG DS V+A LLK+ G++  G+                C     + +A+ 
Sbjct: 19  QNDRLLVAVSGGRDSVVLAHLLKQAGFN-FGI--------------AHCNFQLRIDEAQA 63

Query: 79  -------VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                  + D + V  +   +              +YA  +  +      R ++++    
Sbjct: 64  EQAFTSQLADALTVPFHTISF-----------DTQTYAR-QNGISTQMAARDLRYTWFEQ 111

Query: 132 VTRQLGADVLATGHY 146
           +  + G   +A  H+
Sbjct: 112 IRNEHGYSYIAVAHH 126


>gi|294673632|ref|YP_003574248.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23]
 gi|294473514|gb|ADE82903.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23]
          Length = 433

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V +SGG DS V   L LK  GY +           + S R        D    R +C  
Sbjct: 22  LVGLSGGADS-VALLLILKDLGYRIEAAHCNFRLRGEESDR--------DEQFVRNLCKQ 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            ++  +V  +               YAA    +      R +++     + + +GA  + 
Sbjct: 73  HDIPLHVIHF-----------DTKEYAALH-KVSIEMAARDLRYGYFRQLCQDIGATDVC 120

Query: 143 TGHY 146
             H+
Sbjct: 121 IAHH 124


>gi|218462430|ref|ZP_03502521.1| argininosuccinate synthase protein [Rhizobium etli Kim 5]
          Length = 337

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+S++   L+   G +V+  T                   +++  AR   
Sbjct: 7   KIVLAYSGGLDTSIILKWLQETYGCEVVTFT-------------ADLGQREELETARAKA 53

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGET-PLPCVDCNRTVKFSDLLS 131
             + V    + D  E F    + P           Y  G +   P +  +       L++
Sbjct: 54  KMLGVRDIRIVDLREEFVGDFVFPMLRANTVYEGQYLLGSSIARPLIAEH-------LVA 106

Query: 132 VTRQLGADVLATG 144
           + R++GAD +A G
Sbjct: 107 IAREVGADAVAHG 119


>gi|289582370|ref|YP_003480836.1| GMP synthase, large subunit [Natrialba magadii ATCC 43099]
 gi|289531923|gb|ADD06274.1| GMP synthase, large subunit [Natrialba magadii ATCC 43099]
          Length = 305

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 69/190 (36%), Gaps = 38/190 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A+SGGVDSSV AAL     Y+ IG  L          RKG     ++ +D        
Sbjct: 25  VIALSGGVDSSVAAALA----YESIGDQLTPVYVDTGLMRKGETDQIRETFDYMD----- 75

Query: 84  NVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             S  + D ++RF +A   VI P       GE               +      +  AD 
Sbjct: 76  --SLQIVDAKDRFLDALEGVIDPEEKRKIIGEQF-----------IREFEREATEADADY 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G     R+      K    +    D+                  +  P+ D+ K+ V
Sbjct: 123 LVQGTIYPDRIESEGGIKSHHNVGGLPDVV-------------DFDGIVEPVRDLYKDEV 169

Query: 201 RDLAREMGLD 210
           R++AR + LD
Sbjct: 170 REVARHLDLD 179


>gi|186683955|ref|YP_001867151.1| ExsB family protein [Nostoc punctiforme PCC 73102]
 gi|186466407|gb|ACC82208.1| ExsB family protein [Nostoc punctiforme PCC 73102]
          Length = 275

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS++VA +     YD +G      +   A          +++ DA+    TI
Sbjct: 20  LIAYSGGVDSTLVAKIA----YDALG------DRALAVTAVSPSLLPEELEDAKIQAATI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            ++H +                       T  P   C  C   +    L  +  QLG   
Sbjct: 70  GIAHKIV------------QTHEMENPNYTSNPVNRCYFCKSEL-HDTLKPLALQLGYPY 116

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKE 198
           +  G      +   D    R  +    +                    R PL +  + K 
Sbjct: 117 VVDG------VNADDLHDYRPGIQAAKERG-----------------ARSPLAEVGVTKV 153

Query: 199 SVRDLAREMGLDIADKS 215
            VR L++++GL   DK 
Sbjct: 154 EVRQLSQQLGLPWWDKP 170


>gi|159904616|ref|YP_001548278.1| putative ATP binding related protein [Methanococcus maripaludis C6]
 gi|159886109|gb|ABX01046.1| putative ATP binding related protein [Methanococcus maripaludis C6]
          Length = 291

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 39/176 (22%)

Query: 9   LNSLDLDKNPKDMR--V----------------VVAMSGGVDSSVVAALL-KRDGYDVIG 49
           LN+L   +N ++MR  V                ++  SGG DS V   LL K      + 
Sbjct: 37  LNALKFPRNFEEMRNEVMEYLDELRIRNNKYNCILGFSGGKDSVVALYLLVKELRIRPLC 96

Query: 50  VTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA 109
           VT+                A + + + + V     V   V +            F  + +
Sbjct: 97  VTVDN-----------GYLAEEALTNCKNVAKHFGVDWLVIN------KDFTKFFKETIS 139

Query: 110 AGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
            GE+  PC  C+  +   ++    RQ   D + TGH +        + K+   M R
Sbjct: 140 KGES--PCRVCS-DMNMHEIWQFARQTNIDTIVTGHELPFGTTAIREMKKGINMLR 192


>gi|150403600|ref|YP_001330894.1| putative ATP binding-like protein [Methanococcus maripaludis C7]
 gi|150034630|gb|ABR66743.1| putative ATP binding related protein [Methanococcus maripaludis C7]
          Length = 291

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 39/176 (22%)

Query: 9   LNSLDLDKNPKDMR--V----------------VVAMSGGVDSSVVAALL-KRDGYDVIG 49
           LN+L   +N ++MR  V                ++  SGG DS V   LL K      + 
Sbjct: 37  LNALKFPRNFEEMRNEVMEYLDELRIRNNKYNCILGFSGGKDSVVALYLLVKELRIRPLC 96

Query: 50  VTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA 109
           VT+                A + + + + V     V   V +            F  + +
Sbjct: 97  VTVDN-----------GYLAEEALTNCKNVAKHFGVDWLVIN------KDFTKFFKETIS 139

Query: 110 AGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
            GE+  PC  C+  +   ++    RQ   D + TGH +        + K+   M R
Sbjct: 140 KGES--PCRVCS-DMNMHEIWQFARQTNIDTIVTGHELPFGTTAIREMKKGINMLR 192


>gi|119478303|ref|ZP_01618334.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2143]
 gi|119448643|gb|EAW29888.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2143]
          Length = 406

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G++V  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVIVRWLQDT-YQCEVVTF-----------TADIGQGEEVEPARKKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V   Y+ D +E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  EALGVKEIYIDDLKEEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
           T + GAD ++ G
Sbjct: 107 TNETGADAISHG 118


>gi|330508996|ref|YP_004385424.1| argininosuccinate synthase [Methanosaeta concilii GP-6]
 gi|328929804|gb|AEB69606.1| argininosuccinate synthase [Methanosaeta concilii GP-6]
          Length = 391

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 36/197 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A SGG+D+SV   LL+   G+D I            +          D+        
Sbjct: 4   VVLAYSGGLDTSVCIPLLRERYGFDKI-----------VTVLVDVGQPRSDIERGNLRAK 52

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +   HY  D  E F    + P   +  + E  +      R +  S    +  +LG   L
Sbjct: 53  QLADEHYTIDAREEFVEKCLFPLIKANGSYEGYVLGTAIARPLIASKSAEIADKLGIKNL 112

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A G   R     G+D  R   + R  D                 C +  P+ ++      
Sbjct: 113 AHGCTGR-----GNDQLRFEAIFRATD-----------------CRVIAPMRELDLAREW 150

Query: 202 DL--AREMGLDIADKSD 216
           ++  ARE G+D+    D
Sbjct: 151 EIDYAREHGIDVPVTKD 167


>gi|320451000|ref|YP_004203096.1| GMP synthase (glutamine-hydrolyzing) [Thermus scotoductus SA-01]
 gi|320151169|gb|ADW22547.1| GMP synthase (glutamine-hydrolyzing) [Thermus scotoductus SA-01]
          Length = 503

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 68/201 (33%), Gaps = 47/201 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV++A+SGGVDSS +A LL +    V         +  A           +  +    
Sbjct: 209 EDRVLLAVSGGVDSSTLALLLAKA--RV---------NHLAVFVDHGLLRLGEREEVEGA 257

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTRQ 135
              + V+  V D  ERF  A+              +   +  R +   + +     V R+
Sbjct: 258 LKALGVNLRVVDARERFLTALKG------------VEDPEEKRRIIGREFVEVFSQVARE 305

Query: 136 LG-ADVLATGH-YIRSRLYVGDDG--KRRRIMCRPMDLERDQSYFLFATTQQQLC--DLR 189
            G    LA G  Y       G+ G  K +         E            + L    L 
Sbjct: 306 AGPFRFLAQGTLYPDVIESAGEPGAAKIKSHHNVGGLPE--------DLKFELLEPFRLL 357

Query: 190 FPLGDMKKESVRDLAREMGLD 210
           F      K+ VR+LA  +GL 
Sbjct: 358 F------KDEVRELALLLGLP 372


>gi|312127518|ref|YP_003992392.1| gmp synthase, large subunit [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777537|gb|ADQ07023.1| GMP synthase, large subunit [Caldicellulosiruptor hydrothermalis
           108]
          Length = 511

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 33/195 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV A+SGGVDSSV A L+ +     IG  L          RKG         +   V
Sbjct: 215 NQKVVCALSGGVDSSVAAVLVHKA----IGKNLYCIFVDHGLLRKGE------AEEVMSV 264

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             D  +++    D ++RF +A+                 +     ++         +LG 
Sbjct: 265 FKDQFDMNVIKVDAKDRFLDALKGVTEPEEKRK------IIGREFIRV--FEEEAEKLGD 316

Query: 138 ADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              L  G  +       VG     +         E+           +Q+     PL ++
Sbjct: 317 IKFLVQGTIYPDVVESGVGKAATIKSHHNVGGLPEK--------IKFEQI---IEPLREL 365

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+G+ 
Sbjct: 366 FKDEVRRVGIELGIP 380


>gi|58038730|ref|YP_190694.1| argininosuccinate synthase [Gluconobacter oxydans 621H]
 gi|81672747|sp|Q5FUA8|ASSY_GLUOX RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|58001144|gb|AAW60038.1| Argininosuccinate synthase [Gluconobacter oxydans 621H]
          Length = 410

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 64/201 (31%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L++  Y+   VT                  G+++  AR+  
Sbjct: 8   KKVVLAYSGGLDTSVILRWLQKT-YNCEVVTF-----------TADLGQGEELEPARKKA 55

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   V      D  E F    + P           Y  G +    +   R +       +
Sbjct: 56  EMFGVKEIFVEDLRETFVKDFVFPMFRANTLYEGQYLLGTSIARPLIAQRQI------EI 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
              +GAD +A G                           DQ              +RF L
Sbjct: 110 AEAVGADAVAHG---------------------ATGKGNDQ--------------VRFEL 134

Query: 193 GDMK-KESVRDLA--REMGLD 210
           G    K  V+ +A  RE  L 
Sbjct: 135 GYYSLKPDVKVIAPWREWDLT 155


>gi|253999267|ref|YP_003051330.1| argininosuccinate synthase [Methylovorus sp. SIP3-4]
 gi|253985946|gb|ACT50803.1| argininosuccinate synthase [Methylovorus sp. SIP3-4]
          Length = 407

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPAREKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  KKFGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIDI 106

Query: 133 TRQLGADVLATG 144
             + GAD ++ G
Sbjct: 107 ANETGADAISHG 118


>gi|168062392|ref|XP_001783164.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665306|gb|EDQ51995.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 479

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +  G     +    A    
Sbjct: 82  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGIGETLGLEAKAKASGAS 135

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  ++ D  E F    I P           Y  G +        R +    ++ V 
Sbjct: 136 Q-----LFIVDLREEFVKDYIFPCLRAGAVYERKYLLGTSMA------RPIIAKAMVDVA 184

Query: 134 RQLGADVLATG 144
           + +GAD ++ G
Sbjct: 185 KHVGADAVSHG 195


>gi|119469470|ref|ZP_01612374.1| putative regulator protein [Alteromonadales bacterium TW-7]
 gi|119447005|gb|EAW28275.1| putative regulator protein [Alteromonadales bacterium TW-7]
          Length = 218

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V     + G+DV  +          S   G     +++  A +VC
Sbjct: 3  QKVVVIYSGGMDSFTVLNKALQQGHDVYAL----------SFDYGQ-RHVKELKVAAQVC 51

Query: 81 DTINVSHYVFDYE 93
          + +NV H + D  
Sbjct: 52 EKLNVPHKIVDIS 64


>gi|21358151|ref|NP_649674.1| CG1315 [Drosophila melanogaster]
 gi|6685243|sp|O97069|ASSY_DROME RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|4389446|gb|AAD19816.1| argininosuccinate synthase-like [Drosophila melanogaster]
 gi|23170640|gb|AAF54103.2| CG1315 [Drosophila melanogaster]
 gi|223718736|gb|ACN22205.1| MIP05494p [Drosophila melanogaster]
          Length = 419

 Score = 50.5 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 30/136 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK+  V++A SGG+D+S V   L    Y+VI V                    +D   A 
Sbjct: 2   PKET-VILAYSGGLDTSCVLKWLLDKQYEVICV-------------LADVGQKEDFTAAE 47

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSD 128
           +    I      V D ++ F    I P           Y  G +   PC+          
Sbjct: 48  KKALKIGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISV-------A 100

Query: 129 LLSVTRQLGADVLATG 144
           L+ V R+ GA  LA G
Sbjct: 101 LMEVAREYGAKYLAHG 116


>gi|229828236|ref|ZP_04454305.1| hypothetical protein GCWU000342_00293 [Shuttleworthia satelles DSM
           14600]
 gi|229792830|gb|EEP28944.1| hypothetical protein GCWU000342_00293 [Shuttleworthia satelles DSM
           14600]
          Length = 514

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           L +   D +V+  +SGGVDSSV A LL +  G  +  V 
Sbjct: 209 LRRKIGDGKVLCGLSGGVDSSVAAVLLSKAIGRQLTCVF 247


>gi|190570912|ref|YP_001975270.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019428|ref|ZP_03335234.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|226739765|sp|B3CPU7|GUAA_WOLPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190357184|emb|CAQ54600.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212994850|gb|EEB55492.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 63/204 (30%), Gaps = 39/204 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSV A L  +     IG  L          RK    A          
Sbjct: 220 EKKVIAAVSGGVDSSVAAVLTHKA----IGKQLNCIFIDTGLLRKSQTTAMLK------- 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
                +     D    F + +                 +  N  +         +++G  
Sbjct: 269 ----EIPINYVDKSNLFLSRLKGITDPEEKRK------IIGNTFI--EVFEEEAKKIGDV 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G        +    +        +    ++    L  PL  + K+
Sbjct: 317 DFLMQGTIYSDVVESGHASGNTSTIKSHHN--------VGGLPEKMNLKLVEPLRYLFKD 368

Query: 199 SVRDLAREMGLDIADKSDSQDICF 222
            VR L +E+GL       S +I F
Sbjct: 369 EVRLLGKEIGL-------SDEIIF 385


>gi|149532439|ref|XP_001516069.1| PREDICTED: similar to Argininosuccinate synthase
           (Citrulline--aspartate ligase), partial [Ornithorhynchus
           anatinus]
          Length = 123

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 31/133 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTL-------QLYNSRKASKRKGSCCAGQDVYD 75
           VV+A SGG+D+S +   LK  GYD+I   L       +     +A+   G       + D
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDIIA-YLREEGQRAKNPEEEEAAHPLGLLPTQVFIED 65

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASS--YAAGETPL-PCVDCNRTVKFSDLLS 131
             +            ++ E F   AV         Y  G +   PC+   +       + 
Sbjct: 66  VSK------------EFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARKQ-------VE 106

Query: 132 VTRQLGADVLATG 144
           + ++ GA  ++ G
Sbjct: 107 IAKREGAKYVSHG 119


>gi|257466551|ref|ZP_05630862.1| cell cycle protein MesJ [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917706|ref|ZP_07913946.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691581|gb|EFS28416.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 444

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 19  KDMRVVVAMSGGVDS--SVVAAL-LKRD-GYDVIGVTL-QLYNSRKASKRKGSCCAGQDV 73
           +  R++VA SGG DS   V   L L+    + ++ + L  +     A +    C      
Sbjct: 19  EGDRILVAFSGGPDSVFLVEMLLQLQEQLSFQMLLLHLHHMIRQEDADRDYQFCLEYARK 78

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +   +   ++V  Y  +  +                           R +++     + 
Sbjct: 79  KNLEIIAKKLDVPSYAKENRQSLEE---------------------AGRNLRYKFFQEIR 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++     +AT H++   L           + R   +E      L   +++Q   +R PL 
Sbjct: 118 KEKSYHKIATAHHLDDHLE-----TFFFRLLRGSSME-----GLAGISRKQGDRIR-PLR 166

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDI 220
           D +K+ +     E  +       ++++
Sbjct: 167 DFEKKEILFYLEEHQIPYCHDKTNEEV 193


>gi|257452690|ref|ZP_05617989.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_5R]
 gi|317059230|ref|ZP_07923715.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_5R]
 gi|313684906|gb|EFS21741.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_5R]
          Length = 444

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 19  KDMRVVVAMSGGVDS--SVVAAL-LKRD-GYDVIGVTL-QLYNSRKASKRKGSCCAGQDV 73
           +  R++VA SGG DS   V   L L+    + ++ + L  +     A +    C      
Sbjct: 19  EGDRILVAFSGGPDSVFLVEMLLQLQEQLSFQMLLLHLHHMIRQEDADRDYQFCLEYARK 78

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +   +   ++V  Y  +  +                           R +++     + 
Sbjct: 79  KNLEIIAKKLDVPSYAKENRQSLEE---------------------AGRNLRYKFFQEIR 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++     +AT H++   L           + R   +E      L   +++Q   +R PL 
Sbjct: 118 KEKSYHKIATAHHLDDHLE-----TFFFRLLRGSSME-----GLAGISRKQGDRIR-PLR 166

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDI 220
           D +K+ +     E  +       ++++
Sbjct: 167 DFEKKEILFYLEEHQIPYCHDKTNEEV 193


>gi|242083256|ref|XP_002442053.1| hypothetical protein SORBIDRAFT_08g008320 [Sorghum bicolor]
 gi|241942746|gb|EES15891.1| hypothetical protein SORBIDRAFT_08g008320 [Sorghum bicolor]
          Length = 484

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        +    A   C
Sbjct: 88  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGAIELEGLEKKAKASGAC 141

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D  E F +  I P           Y  G +        R V    ++ V 
Sbjct: 142 Q-----LVVKDLREEFVSEYIYPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDVA 190

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 191 KEVGADAVAHG 201


>gi|238018537|ref|ZP_04598963.1| hypothetical protein VEIDISOL_00364 [Veillonella dispar ATCC 17748]
 gi|303229857|ref|ZP_07316634.1| argininosuccinate synthase [Veillonella atypica ACS-134-V-Col7a]
 gi|237865008|gb|EEP66298.1| hypothetical protein VEIDISOL_00364 [Veillonella dispar ATCC 17748]
 gi|302515487|gb|EFL57452.1| argininosuccinate synthase [Veillonella atypica ACS-134-V-Col7a]
          Length = 403

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +VI V + L         +             
Sbjct: 3   KANKVVLAYSGGLDTSVIIPWLKENYGAEVIAVCVDLGQPEDYDAVEKKAIKSGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D +E F    + P           Y  G +   P +          L
Sbjct: 61  ----------YIVDAKEEFVKDYVWPTVKAGAVYEGKYLLGTSFARPLIG-------KIL 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++ GAD +A G
Sbjct: 104 VDIAKKEGADAIAHG 118


>gi|190893272|ref|YP_001979814.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CIAT 652]
 gi|190698551|gb|ACE92636.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CIAT 652]
          Length = 458

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 36/227 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R++VA+SGG DS+ +  LL      V     L++              +  +      +C
Sbjct: 24  RILVAISGGSDSTGLLLLLDEA---VKAAPHLKISLCAATVDHGLRAGSADEAQQVAALC 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-CNRTVKFSDLLSVTRQLGAD 139
            ++ + H +                 +   GE P   +    R  ++  L     + GA+
Sbjct: 81  ASLGIPHII-----------------AAWQGEKPKTGIMAAAREARYELLAESAERFGAN 123

Query: 140 VLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ++ TGH Y   R  +   G R   +   +         LF      L  L F      + 
Sbjct: 124 LIVTGHTYDDQRETLAMRGVRTEQLSSGIADA-----VLFDRRFWILRPLLF----SSRA 174

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245
            +R   RE  +   D   ++D+    + +   V ++++   A E DI
Sbjct: 175 DIRSFLRERRVAWIDDPSNEDV----KYERVRVRRQLSPDPATETDI 217


>gi|312135230|ref|YP_004002568.1| gmp synthase, large subunit [Caldicellulosiruptor owensensis OL]
 gi|311775281|gb|ADQ04768.1| GMP synthase, large subunit [Caldicellulosiruptor owensensis OL]
          Length = 511

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 37/197 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +VV A+SGGVDSSV A L+ +     IG   +                 ++V +  +V
Sbjct: 215 NHKVVCALSGGVDSSVAAVLVHKA----IG---KNLYCIFVDHGLLRKGEAEEVMNVFKV 267

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
               +++    D ++RF NA           G T     +  R +              +
Sbjct: 268 --QFDMNVIKVDAKDRFLNA---------LRGVT---DPEEKRKIIGREFIRVFEEEAEK 313

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLCDLRFPLG 193
           LG    L  G        V + G  +    +           +    +  +   +  PL 
Sbjct: 314 LGDIKFLVQG---TIYPDVVESGVGKAATIKSHHN-------VGGLPENIKFNQIIEPLR 363

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR +  E+G+ 
Sbjct: 364 ELFKDEVRRVGIELGIP 380


>gi|301114519|ref|XP_002999029.1| argininosuccinate synthase [Phytophthora infestans T30-4]
 gi|262111123|gb|EEY69175.1| argininosuccinate synthase [Phytophthora infestans T30-4]
          Length = 459

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 26/137 (18%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K     +VV+A SGG+D+S++   L   G++VI                     G+D   
Sbjct: 42  KAQAGDKVVLAYSGGLDTSIILKWLTNKGFEVIC------------YCANVGQHGEDYEK 89

Query: 76  ARRVCDTINV-SHYVFDYEERF-----RNAVIVPFASS--YAAGETPLPCVDCNRTVKFS 127
            R    ++     Y+ D  E F       AV         Y  G +    V   + V   
Sbjct: 90  VRAKAMSLGAKKVYIEDLREEFVKHYIFEAVKSNAIYESRYLLGTSLARPVIAKKQV--- 146

Query: 128 DLLSVTRQLGADVLATG 144
               + +  GA  +A G
Sbjct: 147 ---EIAQAEGAKYVAHG 160


>gi|255534090|ref|YP_003094462.1| argininosuccinate synthase [Pedobacter heparinus DSM 2366]
 gi|255347074|gb|ACU06400.1| argininosuccinate synthase [Pedobacter heparinus DSM 2366]
          Length = 397

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 14/128 (10%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S     L +  G +V  V   + N+   S  +        + +  +
Sbjct: 2   KKKVVLAFSGGLDTSFCCIYLAQDRGLEVHSV---IVNTGGFSDEE--------LKEIEK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQL 136
               + V SH V D  E + N+ I              P       V + + + +  +++
Sbjct: 51  RAYALGVASHAVVDETENYYNSCIRYLVFGNVLKNATYPLSVSAERVSQATAIANYVKKI 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADYVAHG 118


>gi|134295998|ref|YP_001119733.1| GMP synthase [Burkholderia vietnamiensis G4]
 gi|226738409|sp|A4JF45|GUAA_BURVG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|134139155|gb|ABO54898.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia vietnamiensis
           G4]
          Length = 539

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L   +            + V+  
Sbjct: 225 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVLDMFEGRLHAKVVH-- 282

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV---- 132
                         D  E+F           + AG T     +  R +   + + V    
Sbjct: 283 -------------VDASEQFL---------GHLAGVT---DPEQKRKIIGREFVEVFQAE 317

Query: 133 TRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            ++L  A  LA G      +  G    ++    +           +    +     L  P
Sbjct: 318 AQKLSKAKWLAQGTIYPDVVESGGTKTKKATTIKSHHN-------VGGLPETLGLKLLEP 370

Query: 192 LGDMKKESVRDLAREMGLD 210
           L D+ K+ VR+L   +GL 
Sbjct: 371 LRDLFKDEVRELGVALGLP 389


>gi|303231180|ref|ZP_07317918.1| argininosuccinate synthase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514087|gb|EFL56091.1| argininosuccinate synthase [Veillonella atypica ACS-049-V-Sch6]
          Length = 403

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +VI V + L         +             
Sbjct: 3   KANKVVLAYSGGLDTSVIIPWLKENYGAEVIAVCVDLGQPEDYDAVEKKAIKSGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D +E F    + P           Y  G +   P +          L
Sbjct: 61  ----------YIVDAKEEFVKDYVWPTVKAGAVYEGKYLLGTSFARPLIG-------KIL 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++ GAD +A G
Sbjct: 104 VDIAKKEGADAIAHG 118


>gi|300692234|ref|YP_003753229.1| queuosine biosynthesis protein [Ralstonia solanacearum PSI07]
 gi|299079294|emb|CBJ51966.1| queuosine biosynthesis protein [Ralstonia solanacearum PSI07]
          Length = 224

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+    G++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANAQGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|291514607|emb|CBK63817.1| NAD+ synthetase [Alistipes shahii WAL 8301]
          Length = 526

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRK 59
           +V EA R    D  +     +  + +SGG+DS+VVA++     G + V  + +       
Sbjct: 250 LVYEAARCGLRDFFRKNGYRKASIGLSGGIDSAVVASIAADALGAENVRALLM------- 302

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV 100
                    + + V DA+ +   + + + V    E + + V
Sbjct: 303 ----PSPFSSLESVEDAKELARNLGIEYNVIPISEIYTSVV 339


>gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
 gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
          Length = 427

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 30/202 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ R++VA+SGGVDSSV+  LL R   Y    +     +     + K      ++V    
Sbjct: 20  ENDRILVAVSGGVDSSVLLNLLARVQEYFKFSIFCATVDHGIRKESK------EEVKFVY 73

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +  ++NV      + + F           YA  E  L   +  R +++  L  + +++ 
Sbjct: 74  NMAQSLNVEC----FIKEF-------DVPLYAK-ENKLSIEEAARKLRYKFLNEIAKKIN 121

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +AT H +               + R         + ++    +   ++  PL   ++
Sbjct: 122 ANKVATAHNLNDLAE-----TVLFRLARGTGP-----FGIYGMKPRN-GNIIRPLLFFER 170

Query: 198 ESVRDLAREMGLDIADKSDSQD 219
           + +   A E  +       + D
Sbjct: 171 KEIEQFATENKIPFVVDKTNFD 192


>gi|197097364|ref|NP_001126812.1| argininosuccinate synthase [Pongo abelii]
 gi|55732726|emb|CAH93061.1| hypothetical protein [Pongo abelii]
          Length = 276

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           Q GA  ++ G
Sbjct: 108 QEGAKYVSHG 117


>gi|262306025|gb|ACY45605.1| gln amidotransferase [Cryptocellus centralis]
          Length = 196

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI V +     RK    +               
Sbjct: 45  KVLMLLSGGVDSTVCAALLHKALKEDQVIAVHIDNGFMRKNESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
              + V   V +   +F N
Sbjct: 95  -RRLGVKMRVINASHQFYN 112


>gi|253998936|ref|YP_003050999.1| GMP synthase large subunit [Methylovorus sp. SIP3-4]
 gi|253985615|gb|ACT50472.1| GMP synthase, large subunit [Methylovorus sp. SIP3-4]
          Length = 540

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 66/202 (32%), Gaps = 44/202 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 231 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGKMVMEMF-------AG 280

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TRQL- 136
            ++      D   +F             AG   +   +  R +     + V      +L 
Sbjct: 281 QLHARVIHVDATAQFMGQ---------LAG---VSDPEAKRKIIGRAFVEVFKAEAAKLK 328

Query: 137 -------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DL 188
                  GA  LA G      +  G    ++ +  +           +     +QL   L
Sbjct: 329 AGTGGHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKL 380

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D+ K+ VR L   +GL 
Sbjct: 381 LEPLRDLFKDEVRQLGVALGLP 402


>gi|218438056|ref|YP_002376385.1| ExsB family protein [Cyanothece sp. PCC 7424]
 gi|218170784|gb|ACK69517.1| ExsB family protein [Cyanothece sp. PCC 7424]
          Length = 272

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 46/200 (23%)

Query: 19  KDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K M R ++A SGGVDS++VA +     YD++G      +   A          +++ DA+
Sbjct: 14  KQMDRALIAYSGGVDSTLVAKIA----YDILG------DRALAVTAVSPSLLPEELEDAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               TI ++H +    E                      C  C   +    L  +  Q G
Sbjct: 64  IQAATIGITHELIQTHEMDNPNYTSNPV---------NRCYFCKSEL-HDTLKPLAMQRG 113

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
              +  G      +   D    R  +    +                   +R PL +  +
Sbjct: 114 YPYIIDG------VNADDLQDYRPGIQAAKERG-----------------VRSPLAETGI 150

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  VR L++ +GL   DK 
Sbjct: 151 TKAQVRQLSQYLGLPWWDKP 170


>gi|163787436|ref|ZP_02181883.1| argininosuccinate synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877324|gb|EDP71381.1| argininosuccinate synthetase [Flavobacteriales bacterium ALC-1]
          Length = 394

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V+A SGG+D+S  A  L + GYD+  V                    +++       
Sbjct: 2   KKLVIAYSGGLDTSYCAVSLSKAGYDIHAV-----------SVNTGGFTQEEIKTIESNA 50

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLGA 138
             + VS Y   D    + + VI              P       +  +  ++   + + A
Sbjct: 51  YKMGVSTYKNIDAIASYYDKVIKYLIFGNVLKNNTYPLSVSAERIIQAIEIIQYAKSINA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 KYIAHG 116


>gi|304387557|ref|ZP_07369746.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091]
 gi|304338444|gb|EFM04565.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091]
          Length = 445

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +            G      D 
Sbjct: 24  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PDALHIHHGLSPRADDW 77

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 78  ADFCQNYCDMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             +          + + P
Sbjct: 122 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWRP 170

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 171 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHCILPELSAQIPHFGR 223


>gi|269103266|ref|ZP_06155963.1| GMP synthase [glutamine-hydrolyzing] [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163164|gb|EEZ41660.1| GMP synthase [glutamine-hydrolyzing] [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 504

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 63/202 (31%), Gaps = 45/202 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +     G        
Sbjct: 206 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGEQVMDMFG-------- 257

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++      E RF            A      P  +  R +     + V 
Sbjct: 258 -------DHFGLNIVHVKAENRFLE----------ALAGVDEP--EAKRKIIGRVFVEVF 298

Query: 134 RQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            +       A  LA G      +        +  + +           +          L
Sbjct: 299 DEESKKLQNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMQMGL 351

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR +  E+GL 
Sbjct: 352 VEPLKELFKDEVRKIGLELGLP 373


>gi|309389860|gb|ADO77740.1| GMP synthase (glutamine-hydrolyzing) [Halanaerobium praevalens DSM
           2228]
          Length = 512

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +V+  +SGGVDS+V +A++ +  G  +  +            RKG     + 
Sbjct: 210 IRKQVGQGKVICGLSGGVDSAVASAIVHKAIGDQLTCIF-----VDHGLLRKGEAEQVK- 263

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLS 131
               R   +  N+     D ++RF + +                 +  +  ++ F +   
Sbjct: 264 ----RTFGEEFNIPLIYVDAKKRFLDRLAGVTEPEAKRK------IIGDEFIQVFDEEAE 313

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + +G   L  G      +  G  G  +    +           +    ++   +L  P
Sbjct: 314 KIKDVG--YLVQGTIYSDVIESG--GTDKAATIKSHHN-------VGGLPEEMNLELVEP 362

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR +   +GL 
Sbjct: 363 LRFLFKDEVRKIGEVLGLP 381


>gi|308063191|gb|ADO05078.1| NAD synthetase [Helicobacter pylori Sat464]
          Length = 260

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSVSMPESKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       +A+        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|291550741|emb|CBL27003.1| conserved hypothetical protein TIGR00268 [Ruminococcus torques
           L2-14]
          Length = 273

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 47/214 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +A S GVDS+    LLK   ++++G      ++  A   + S    +++ +A   C  
Sbjct: 22  VAIAFSSGVDST---FLLKVA-HEILG------DNVMAITVQSSSFPKRELNEAIAFCKK 71

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            ++ H V           +        +   P  C  C   + F  + ++  +     +A
Sbjct: 72  EDIRHKV---------CQVDEMKIEGFSQNPPNRCYLCKHAL-FEKIGAIAEKNEIAYVA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G        + D G  R  +    +L                  ++ PL    + K  +
Sbjct: 122 EG------SNMDDLGDYRPGLQAVAELG-----------------VKSPLREAGLTKAEI 158

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           R+L++EMGL   +K      C   +  Y +++ +
Sbjct: 159 RELSKEMGLSTWEKPSF--ACLASRFVYGEIISK 190


>gi|261837769|gb|ACX97535.1| NH(3)-dependent NAD+ synthetase [Helicobacter pylori 51]
          Length = 260

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSVSMPESKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       +A+        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|134301725|ref|YP_001121693.1| NAD+ synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049502|gb|ABO46573.1| NAD+ synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 249

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 33  VIGLSGGIDSAVAASLAVKTGLPTTALIL-----------PSDNNQHQDMQDALELIEML 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +    S           +  N    ++   L +  +Q      
Sbjct: 82  NIEHYTISIQLAY-EAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY----- 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 136 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 176 ELGKYLDVP 184


>gi|300868121|ref|ZP_07112756.1| Argininosuccinate synthase [Oscillatoria sp. PCC 6506]
 gi|300333895|emb|CBN57936.1| Argininosuccinate synthase [Oscillatoria sp. PCC 6506]
          Length = 400

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +   +          G ++   R+
Sbjct: 3   RATKVVLAYSGGVDTSVCIPYLKNE-----------WGVEEVITLAADLGQGDELEPIRK 51

Query: 79  VCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
                   +S  V D  E F      P   + A  E   P      R +    L+    +
Sbjct: 52  KALASGASISL-VIDGTESFVKDCAFPAIQANALYENRYPLSTALARPLIAKMLVDAAEK 110

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 111 YGADAIAHG 119


>gi|283956194|ref|ZP_06373679.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792348|gb|EFC31132.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 224

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 82/213 (38%), Gaps = 34/213 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEQRTQEKERECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKF-----SDLLSV- 132
             + V   Y+ D    F   +     +  +        C+     + +        LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCISDTPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVCIK 162

Query: 190 FPLGDMKKESVRDLAREMGLD---IADKSDSQD 219
            PL  + K  + +LA +  +         +S+D
Sbjct: 163 TPLVRLNKAKIVELALKENVPLELTWSCYESKD 195


>gi|152982955|ref|YP_001353959.1| LPS biosynthesis protein WbpG [Janthinobacterium sp. Marseille]
 gi|151283032|gb|ABR91442.1| LPS biosynthesis protein WbpG [Janthinobacterium sp. Marseille]
          Length = 382

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 13  DLDKNPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCA 69
           D+ K     +   ++ +SGG DSS +   +   G  ++ V     +NS+ A++   +   
Sbjct: 59  DMKKAGVGKKYDAIIGVSGGCDSSYLVHTMHAAGLRLLAVHFDNTWNSKVATENIHNLL- 117

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS-D 128
                      + + +  +      +  + +   F     AG   +  +D    +  +  
Sbjct: 118 -----------EKLGIDLFTIVVNNKEYDDIYRSFL---KAG---VRDIDSPTDIGLATT 160

Query: 129 LLSVTRQLGADVLATGHYIRSRLY-----VGDDGKRRRIMCRPMDLERDQSY-------F 176
           L     + G   +  GH  R+        V  DGK    + +     + +++       F
Sbjct: 161 LYRAAEKFGVKYMIEGHSFRTEGVAPLGWVYMDGKYIESVQKKFGTYKIKTFPNLWLKDF 220

Query: 177 LFATTQQQLCDLRFPLG--DMKKESVRD-LAREMG 208
           L      Q+  +R PL   D  KE+ +  LA E G
Sbjct: 221 LRWMIFGQIKKVR-PLYYMDYDKEAAKKLLAEEYG 254


>gi|313681859|ref|YP_004059597.1| argininosuccinate synthase [Sulfuricurvum kujiense DSM 16994]
 gi|313154719|gb|ADR33397.1| argininosuccinate synthase [Sulfuricurvum kujiense DSM 16994]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y+   VT                  G++V  AR   
Sbjct: 6   KKVVLAYSGGLDTSVILKWLQDE-YNCEVVTF-----------TADIGQGEEVEPARAKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +     Y+ D  E F    + P           Y  G +    +   R        
Sbjct: 54  ISLGIKPENIYIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQ------A 107

Query: 131 SVTRQLGADVLATG 144
            + R  GAD ++ G
Sbjct: 108 EIARITGADAVSHG 121


>gi|218887418|ref|YP_002436739.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758372|gb|ACL09271.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 311

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 69/224 (30%), Gaps = 27/224 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D R++VA+SGG DS  +   L R GYDV G+ + L     +   +G            R
Sbjct: 46  HDDRILVALSGGKDSLSLMLELSRLGYDVTGLHIDLAIPGSSPAARGV---------VER 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+   ++  V +                  A      C  C + +K             
Sbjct: 97  FCEKHGLNLIVKEMGAE------GLAIPDVKARLNRPVCSACGK-IKRYFFNKTALDENF 149

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            VLATGH +   +        R  +    D   D                  PL  + + 
Sbjct: 150 TVLATGHNLDDEIARLFSNTLRWDVAYLSDQGPD------LAADGGFARKVKPLWRLSEF 203

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
              + A  MG++          C    G  F   K++   +  E
Sbjct: 204 ETANYAFLMGIEHHYAP-----CPYSGGASFTFYKKLLTDLEEE 242


>gi|207728192|ref|YP_002256586.1| hypothetical protein RSMK04567 [Ralstonia solanacearum MolK2]
 gi|206591437|emb|CAQ57049.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 224

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+    G++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANAQGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|121533524|ref|ZP_01665352.1| PP-loop domain protein [Thermosinus carboxydivorans Nor1]
 gi|121308083|gb|EAX48997.1| PP-loop domain protein [Thermosinus carboxydivorans Nor1]
          Length = 266

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 32/143 (22%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSS---VVAALLKR---DGYDVIGVTLQLYNSRKASKRKG 65
           ++ D      R+++ +SGG DSS      ALL+      +++  +TL             
Sbjct: 18  IEFDLISDGDRILIGLSGGKDSSFLTYALALLRDHSPRKFELAAITL------------- 64

Query: 66  SCCAGQDVYDA--RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                 D   A     C  + +  +       F+  +    A + A  +   PC  C   
Sbjct: 65  DPMFSTDFATAGLAAFCADLGIPFHT------FKIDI----AGAIARNDGKDPCYSC-AF 113

Query: 124 VKFSDLLSVTRQLGADVLATGHY 146
            +   +    ++ G + +A  H+
Sbjct: 114 FRRGAINRFAKENGFNKIAYAHH 136


>gi|317485079|ref|ZP_07943961.1| hypothetical protein HMPREF0179_01314 [Bilophila wadsworthia 3_1_6]
 gi|316923614|gb|EFV44818.1| hypothetical protein HMPREF0179_01314 [Bilophila wadsworthia 3_1_6]
          Length = 365

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ MSGG DS+ +A LLK       G  ++L           +    +   +A+ +   +
Sbjct: 68  LIMMSGGKDSAYLADLLKETY----G--MRLL----GFIIDINYEYPETFENAKTIARKL 117

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP---LPCVDCNRTVKFSDLLSVTRQLGADV 140
           ++ + VF  E          F  +  A   P     C  C R +  S   +  R++G  +
Sbjct: 118 DLPYVVFRQEPEAMRRYYR-FLFTEKALLQPDGGQVCTFCGRFLIHSA-CAFARRMGIPL 175

Query: 141 LATGHYIRSRLYVGD 155
           + +GH       +G+
Sbjct: 176 VFSGHNPDQIFLMGE 190


>gi|325680741|ref|ZP_08160279.1| NAD+ synthase [Ruminococcus albus 8]
 gi|324107521|gb|EGC01799.1| NAD+ synthase [Ruminococcus albus 8]
          Length = 385

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + + V+ +SGG DSSV AAL     G D VIGV +      +  +    C         +
Sbjct: 165 ETKAVIGISGGKDSSVAAALCVEALGKDRVIGVLM-----PQGEQFDIDCS--------K 211

Query: 78  RVCDTINVSHYVFD 91
           ++ + + +  Y  +
Sbjct: 212 QLVNHLGIKSYEIN 225


>gi|261200809|ref|XP_002626805.1| argininosuccinate synthase [Ajellomyces dermatitidis SLH14081]
 gi|239593877|gb|EEQ76458.1| argininosuccinate synthase [Ajellomyces dermatitidis SLH14081]
 gi|327357917|gb|EGE86774.1| argininosuccinate synthase [Ajellomyces dermatitidis ATCC 18188]
          Length = 416

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   RV +A SGG+D+S + A L   GYDV+                      +D  +A 
Sbjct: 2   PAKERVCLAYSGGLDTSCILAWLIERGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
           R   +I  +   V D +  F   +              Y  G +        R V    +
Sbjct: 49  RKALSIGALKLVVSDLKREFVEDLCYRAIQCNAIWEDRYLLGTSLA------RPVIARAM 102

Query: 130 LSVTRQLGADVLATG 144
           +   ++ G   ++ G
Sbjct: 103 MRCAKEEGCIAVSHG 117


>gi|315645200|ref|ZP_07898326.1| GMP synthase, large subunit [Paenibacillus vortex V453]
 gi|315279621|gb|EFU42926.1| GMP synthase, large subunit [Paenibacillus vortex V453]
          Length = 512

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 56/206 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V+ A+SGGVDSSVVA L+ R     IG  L          RKG          A  V
Sbjct: 217 EQKVLCALSGGVDSSVVAMLIHRA----IGDQLTCMFIDHGLLRKGE---------AESV 263

Query: 80  CDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTV-------- 124
            +T         +  +F   V+       F S     + P     +  N  +        
Sbjct: 264 MET---------FVGKFDMKVVKIDAQERFMSKLKGVDDPEKKRKIIGNEFIYVFDEESS 314

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           KF D            LA G        + + G       +           +    +  
Sbjct: 315 KFDDFA---------FLAQG---TLYTDIVESGTETAHTIKSHHN-------VGGLPEDM 355

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL  + K+ VR +  E+GL 
Sbjct: 356 KFTLIEPLKALFKDEVRKVGEELGLP 381


>gi|283769112|ref|ZP_06342017.1| thiamine biosynthesis/tRNA modification protein ThiI [Bulleidia
           extructa W1219]
 gi|283104298|gb|EFC05676.1| thiamine biosynthesis/tRNA modification protein ThiI [Bulleidia
           extructa W1219]
          Length = 472

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 33/189 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ +SGG+DS V    L + G  V  V          + +         + D +  
Sbjct: 175 NGKVMMLLSGGIDSPVATYQLIKRGLKVEAVHFAAPPYTSEAAKNKVLKLASMISDYQG- 233

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                +  +V  + E             Y   + P   +   R + F     +       
Sbjct: 234 ----GMKVHVVPFTEL--------QLDIYRVAKDPY-AITLMRRMMFRIAEKLAINNRCL 280

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TG  +         G+        M    D    +          +  PL  M K  
Sbjct: 281 AIGTGESL---------GQVASQTLESMVTIND----VVHIP------VLRPLVSMDKVE 321

Query: 200 VRDLAREMG 208
           +  LARE+G
Sbjct: 322 IIQLAREIG 330


>gi|258404559|ref|YP_003197301.1| NAD+ synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796786|gb|ACV67723.1| NAD+ synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 548

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 22/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++ +SGGVDS++ AA+     G + V+GV +                +   + DA+ +
Sbjct: 294 KALLGLSGGVDSALCAAVAVEALGAENVLGVLM-----------PSPYTSAASIEDAQAL 342

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNR---TVKFSDLLSVTRQ 135
            DT+ ++  V   E      V+  F  +     T   P V        ++ + L++++ +
Sbjct: 343 ADTLGIAQQVLPIEP-----VMNAFEETLRPAFTGYTPDVTEENIQSRIRGNLLMALSNK 397

Query: 136 LGADVLATG 144
            G+ +L TG
Sbjct: 398 YGSLLLTTG 406


>gi|208779928|ref|ZP_03247272.1| NAD+ synthetase [Francisella novicida FTG]
 gi|208744383|gb|EDZ90683.1| NAD+ synthetase [Francisella novicida FTG]
          Length = 249

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A+L  + G     + L                  QD+ DA  + + +
Sbjct: 33  VIGLSGGIDSAVAASLAVKTGLPTTALIL-----------PSDNNQHQDMQDALELIEML 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVL 141
           N+ HY    +  +  A +    S           +  N    ++   L +  +Q      
Sbjct: 82  NIEHYSISIQPTY-EAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQY----- 135

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  +R+ +G D                  Y  + T          PL ++KK  V 
Sbjct: 136 -------NRIVIGTDNACEW-------------YMGYFTKFGDGAADILPLVNLKKSQVF 175

Query: 202 DLAREMGLD 210
           +L + + + 
Sbjct: 176 ELGKYLDVP 184


>gi|299067716|emb|CBJ38925.1| queuosine biosynthesis protein [Ralstonia solanacearum CMR15]
          Length = 224

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+    G++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANAQGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|322417975|ref|YP_004197198.1| PP-loop domain-containing protein [Geobacter sp. M18]
 gi|320124362|gb|ADW11922.1| PP-loop domain protein [Geobacter sp. M18]
          Length = 268

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 54/200 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRVC 80
           ++VA SGGVDS+    LLK          +    S +  A           ++ +A+R+ 
Sbjct: 21  ILVAFSGGVDST---FLLKAA--------MDTLGSERVLAVTATSPTYPESELSEAKRLA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLG 137
            TI  +  + +  E                G +  P   C  C   + F       R+LG
Sbjct: 70  ATIGATQLLVESNELE------------IPGFSHNPKDRCYHCKSEL-FRICGDKARELG 116

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
              +A G          D G  R       +L                  +R PL   ++
Sbjct: 117 FACVADG------SNTDDLGDYRPGRVAACEL-----------------KVRSPLLEAEL 153

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  +R+L+R +GL   DK 
Sbjct: 154 SKGEIRELSRGLGLPTWDKQ 173


>gi|45659143|ref|YP_003229.1| argininosuccinate synthase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|47605392|sp|P61524|ASSY_LEPIC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|45602389|gb|AAS71866.1| argininosuccinate synthase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 403

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 44/216 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +N    ++V+A SGG+D+SV+   LK   G +VI  T     +    K + S    + 
Sbjct: 1   MAQNKPVKKIVLAYSGGLDTSVILTWLKDTYGCEVIAFT-----ADIGQKEELSGLEEKG 55

Query: 73  VYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +   A +V        Y+ D    F    I P     A  E          R +    ++
Sbjct: 56  IKTGASKV--------YIQDLRLEFARDFIFPAIQGNAIYEMRYLLGTSLARPLIAKAMV 107

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V  + GAD  A G                           DQ  F              
Sbjct: 108 EVAEKEGADAFAHG---------------------ATGKGNDQVRFELGVKSLAPEKTII 146

Query: 191 PLGDMK----KESVRDLAREMGLDIADKSD---SQD 219
               +     +  + + A+  G+ +   ++   S D
Sbjct: 147 APWRIWSFGGRSDLIEYAKSKGIPVPVTAEKPYSMD 182


>gi|17545457|ref|NP_518859.1| putative signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|81506162|sp|Q8Y1F2|QUEC_RALSO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|17427749|emb|CAD14268.1| hypothetical signal peptide protein [Ralstonia solanacearum
          GMI1000]
          Length = 224

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+    G++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANAQGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|322706302|gb|EFY97883.1| GMP synthase [Metarhizium anisopliae ARSEF 23]
          Length = 528

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 66/211 (31%), Gaps = 56/211 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VCD 81
           V+  +SGGVDS+V A L++      IG      +   A      C    +  + ++ + D
Sbjct: 220 VIGGVSGGVDSTVGATLMREA----IG------DRFIAIGINNGCMRLNEFEEVKKNLRD 269

Query: 82  TINVSHYVFDYEERF---RNAVIVP----------FAS---------SYAAGETPLPCVD 119
            + ++  V D  E F      V  P          F              A  TP     
Sbjct: 270 HLGINLTVVDAGELFLSRLEGVTDPEKKRKIIGSTFIDVFEKEAIRIEKEAENTPN---- 325

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
              + K    L  T             I S  + G     +         ER        
Sbjct: 326 ---SGKVEWFLQGTL--------YPDVIESLSWRGPSATIKTHHNTGGLPER-------M 367

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              Q L  L  PL  + K+ VR + R++G+ 
Sbjct: 368 MNGQGL-RLIEPLRLLFKDEVRAIGRQLGIH 397


>gi|319766013|ref|YP_004131514.1| exsB protein [Geobacillus sp. Y412MC52]
 gi|317110879|gb|ADU93371.1| exsB protein [Geobacillus sp. Y412MC52]
          Length = 223

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 26/197 (13%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  ++  VVV  SGG DS+      K    +V  VT   ++  +  +R+        +  
Sbjct: 2   KMNEEKAVVV-FSGGQDSTTCLFWAKEQFGEVEAVT---FDYGQRHRRE--------IDV 49

Query: 76  ARRVCDTINVSHYVFDYEERFR---NAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLS 131
           A+ + D + V H V D     +   NA+     +     GE P   VD    +  S    
Sbjct: 50  AQAIADELGVRHTVLDLSLLGQLAPNALTRRDIAIEQKEGELPTTFVDGRNLLFLSFAAV 109

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q GA  + TG           D       CR + ++        A   + +     P
Sbjct: 110 FAKQRGARHIVTG-------VCETDFSGYPD-CRDVFIKSLNVTLNLAMDYEFVIHT--P 159

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K     LA E+G
Sbjct: 160 LMWLTKAETWKLADELG 176


>gi|322389543|ref|ZP_08063093.1| GMP synthase [Streptococcus parasanguinis ATCC 903]
 gi|321143737|gb|EFX39165.1| GMP synthase [Streptococcus parasanguinis ATCC 903]
          Length = 519

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 208 TMDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHG 262

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG      D+     +     ++    D  +RF + +                 V  
Sbjct: 263 LLRKGEANQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYV 317

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 318 -----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 360

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 PEDMQFELIEPLNTLYKDEVRALGTELGMP 390


>gi|38233202|ref|NP_938969.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|44887924|sp|P60499|GUAA_CORDI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|38199461|emb|CAE49112.1| GMP synthase [glutamine-hydrolysing] [Corynebacterium diphtheriae]
          Length = 525

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 221 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVQTDF------ 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F N +                 +          L         
Sbjct: 272 VAAT-GAKLVTVDEREAFLNKLAGVTEPEAKRKAIGAEFIRSFERAVAGILDDAPEGSTV 330

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 331 DFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFQLVEPLRLLFKD 381

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 382 EVRAVGRELGLP 393


>gi|24216865|ref|NP_714346.1| argininosuccinate synthase [Leptospira interrogans serovar Lai str.
           56601]
 gi|30172845|sp|Q8EYP7|ASSY_LEPIN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|24198242|gb|AAN51364.1|AE011570_7 argininosuccinate synthase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 403

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 44/216 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +N    ++V+A SGG+D+SV+   LK   G +VI  T     +    K + S    + 
Sbjct: 1   MAQNKPVKKIVLAYSGGLDTSVILTWLKDTYGCEVIAFT-----ADIGQKEELSGLEEKG 55

Query: 73  VYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
           +   A +V        Y+ D    F    I P     A  E          R +    ++
Sbjct: 56  IKTGASKV--------YIQDLRLEFARDFIFPAIQGNAIYEMRYLLGTSLARPLIAKAMV 107

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V  + GAD  A G                           DQ  F              
Sbjct: 108 EVAEKEGADAFAHG---------------------ATGKGNDQVRFELGVKSLAPEKTII 146

Query: 191 PLGDMK----KESVRDLAREMGLDIADKSD---SQD 219
               +     +  + + A+  G+ +   ++   S D
Sbjct: 147 APWRIWSFGGRSDLIEYAKSKGIPVPVTAEKPYSMD 182


>gi|329766675|ref|ZP_08258218.1| NAD synthase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329136930|gb|EGG41223.1| NAD synthase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 265

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 23 VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          VV+ +SGG+DSS+VAAL  +  G + V+G+ +      K S  +           A+++ 
Sbjct: 37 VVIGLSGGIDSSLVAALCVKAIGSEKVLGLIM----PEKESDPESQIT-------AKKIA 85

Query: 81 DTINVSHYVFD 91
          D  ++   + D
Sbjct: 86 DDYDIKTEIID 96


>gi|300710572|ref|YP_003736386.1| NAD+ synthetase [Halalkalicoccus jeotgali B3]
 gi|299124255|gb|ADJ14594.1| NAD+ synthetase [Halalkalicoccus jeotgali B3]
          Length = 303

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 58/205 (28%), Gaps = 69/205 (33%)

Query: 23  VVVAMSGGVDSSVV--------------AALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           VVV MSGG+DS+V               A  L                            
Sbjct: 57  VVVPMSGGIDSTVTAAIAAEALGADRVLALRL-----------------------PCHKT 93

Query: 69  AGQDVYDARRVCDTINVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              D  DAR + + + + H         +RF   V  P       G T       N    
Sbjct: 94  EYLDATDARTIAEGLGIEHREVQLRGLLDRFETQV-APTI-----GPTDERDALGN---- 143

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                 V  +L          +RS L +G     R  +           +  +      L
Sbjct: 144 ------VVARLRMTCAYYAANVRSSLVLGT--ANRSELLLGY-------FTKYGDGGADL 188

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
                PLGD+ K  VR LA  +G+ 
Sbjct: 189 H----PLGDLYKTEVRALATRVGVP 209


>gi|300704847|ref|YP_003746450.1| queuosine biosynthesis protein [Ralstonia solanacearum CFBP2957]
 gi|299072511|emb|CBJ43861.1| queuosine biosynthesis protein [Ralstonia solanacearum CFBP2957]
          Length = 224

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+    G++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANAQGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|289624958|ref|ZP_06457912.1| argininosuccinate synthase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330867248|gb|EGH01957.1| argininosuccinate synthase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|261337316|ref|ZP_05965200.1| GMP synthase [Bifidobacterium gallicum DSM 20093]
 gi|270277687|gb|EFA23541.1| GMP synthase [Bifidobacterium gallicum DSM 20093]
          Length = 520

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ +  G  +  V            RKG     +  +D   V  
Sbjct: 218 VICGLSGGVDSAVAAALVHKAIGDQLTCVF-----VDHGLLRKGEVEQVK--HD--FVAA 268

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFASSYAAGETPLPCVDCNRTVKFSD 128
           T  +     D  E F            +  +I   F  ++   +                
Sbjct: 269 T-GIKLIAVDASEEFLSALKGVSEPEKKRKIIGEKFIRTFEQAQ--------------RQ 313

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           ++      G +V            V   G       +           +         +L
Sbjct: 314 VIEEAGAQGKEVKFLVQGTLYPDVVESGGGDGASNIKSHHN-------VGGLPDDLKFEL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+GL 
Sbjct: 367 IEPLRTLFKDEVRAIGTELGLP 388


>gi|254448980|ref|ZP_05062434.1| glutamine-dependent NAD+ synthetase signal peptide protein [gamma
           proteobacterium HTCC5015]
 gi|198261374|gb|EDY85665.1| glutamine-dependent NAD+ synthetase signal peptide protein [gamma
           proteobacterium HTCC5015]
          Length = 543

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++V AL     G D V  V +                +   + DA ++ 
Sbjct: 289 VVLGLSGGIDSALVLALAVDALGADRVEAVMM-----------PSRYTSQMSLDDAAQIA 337

Query: 81  DTINVSHYVFDYEERF 96
           +   V+++    E  F
Sbjct: 338 ENFGVAYHTVSIEPSF 353


>gi|12483930|gb|AAG53900.1| MLL/GMPS fusion protein [Homo sapiens]
          Length = 551

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 371 KVLVLLSGGVDSTVCTALLNRALNQEQ---VIAVHIDN--------GFMRKRESQSVEEA 419

Query: 77  RRVCDTINVSHYVFDYEERFRN 98
            +    + +   V +    F N
Sbjct: 420 LK---KLGIQVKVINAAHSFYN 438


>gi|86142174|ref|ZP_01060684.1| argininosuccinate synthase [Leeuwenhoekiella blandensis MED217]
 gi|85830926|gb|EAQ49383.1| argininosuccinate synthase [Leeuwenhoekiella blandensis MED217]
          Length = 395

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S  A  L +  G++V  V                    +++ +    
Sbjct: 2   KKLVLAYSGGLDTSYCAKYLSEEKGFEVHAV-----------SINTGGFTQEEIDEIESK 50

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              I    Y      +RF + V+              P  V   R ++  ++++  + +G
Sbjct: 51  ALKIGAKTYKNVQAVDRFYDKVVKYLIFGNVLKNNTYPLSVSAERIIQAVEIINYAKSIG 110

Query: 138 ADVLATG 144
           A+ +A G
Sbjct: 111 AEYVAHG 117


>gi|328950829|ref|YP_004368164.1| tRNA sulfurtransferase [Marinithermus hydrothermalis DSM 14884]
 gi|328451153|gb|AEB12054.1| tRNA sulfurtransferase [Marinithermus hydrothermalis DSM 14884]
          Length = 404

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 43/217 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV +SGG+DS V A  + + G   + V    Y          S    + + D +    
Sbjct: 174 KVVVLLSGGIDSPVAAWRMMKRGARAVFVHFHSYPHTDYYSAVKSKKTVEVLADWQGESK 233

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 Y+    +  +  +       Y                  + L        A+ +
Sbjct: 234 -----LYLVPLAKV-QEEIFARCPERYR-----------------TLLYRRFMLRIAEAI 270

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY-FLFATTQQQLCDLRFPLGDMKKESV 200
           A     ++ L  GD           +     Q+   + A  +     +  PL  M K  V
Sbjct: 271 AEQEDAKA-LVTGD----------ALGQVASQTLENMHAVGRAVRMLVLRPLVGMDKTEV 319

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
            + A+ +G        + +I  + Q      ++    
Sbjct: 320 IEAAKRIG--------TYEISILPQQDCCSFLEPKRP 348


>gi|322392267|ref|ZP_08065728.1| GMP synthase [Streptococcus peroris ATCC 700780]
 gi|321144802|gb|EFX40202.1| GMP synthase [Streptococcus peroris ATCC 700780]
          Length = 520

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++    D  +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|304312856|ref|YP_003812454.1| Argininosuccinate synthase [gamma proteobacterium HdN1]
 gi|301798589|emb|CBL46819.1| Argininosuccinate synthase [gamma proteobacterium HdN1]
          Length = 404

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSIILKWLQEN-YQCEVVTF-----------TADLGQGEELEPARQKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + +   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  AGLGIKEIYIEDLREEFARDFVFPMFRANTLYEGEYLLGTSIARPLIAKR------LVEI 106

Query: 133 TRQLGADVLATG 144
             +  AD ++ G
Sbjct: 107 ANETQADAISHG 118


>gi|294102771|ref|YP_003554629.1| Queuosine synthesis-like protein [Aminobacterium colombiense DSM
           12261]
 gi|293617751|gb|ADE57905.1| Queuosine synthesis-like protein [Aminobacterium colombiense DSM
           12261]
          Length = 282

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 46/206 (22%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + K  +  R VV+ SGG+DS+VV A++       DV     + +        +G      
Sbjct: 15  IKKLKQSRRCVVSFSGGIDSAVVVAIMASLMAPEDVHAAMFRSFLHFPEEMERGGLF--- 71

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                   C ++ V+ +     E   + V+   +           C  C +  +  +LL 
Sbjct: 72  --------CHSLGVTLHPLPGPELDVDEVMNNSSER---------CRFC-KKARGRELLE 113

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             + + AD++  G                       D  +D +       ++ +  +  P
Sbjct: 114 FAKGIEADLVLEGSNA--------------------DDLKDATRLGTKVLKE-MPQIYSP 152

Query: 192 L--GDMKKESVRDLAREMGLDIADKS 215
           L  G + K+ VR LA+E+ +   D+ 
Sbjct: 153 LAEGGLSKDKVRTLAKELDISWWDEQ 178


>gi|229892363|gb|ACQ89825.1| MIP06849p [Drosophila melanogaster]
          Length = 283

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVT 51
           + +V++ +SGGVDSSV AALL+R    + +I V 
Sbjct: 228 NNKVLLLVSGGVDSSVCAALLRRALYPHQIIAVH 261


>gi|330957746|gb|EGH58006.1| argininosuccinate synthase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|154149217|ref|YP_001406584.1| NAD+ synthetase [Campylobacter hominis ATCC BAA-381]
 gi|189030328|sp|A7I243|NADE_CAMHC RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|153805226|gb|ABS52233.1| NAD+ synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 247

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 44/189 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V +SGG+DS+VV+AL  +       G+ L                  +++ DA   C+ 
Sbjct: 27  IVGISGGLDSAVVSALCAKAKPKNTFGLIL-----------PAKSSDKKNLNDAISHCEK 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             + + +           I PF  ++               ++  +  +  R      L 
Sbjct: 76  WGIKYEIIS---------IEPFLQAFRDSRNDEI-----SRIRLGNFAARVRM----SLL 117

Query: 143 TGHYIRSR-LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                +   + VG      R++              + T    L     P+G++ K  + 
Sbjct: 118 YDFSAKISGVVVGTSNLSERML-------------GYGTIYGDLACAFNPIGELFKTEIF 164

Query: 202 DLAREMGLD 210
           + A+ + +D
Sbjct: 165 EFAKFLNID 173


>gi|307637024|gb|ADN79474.1| NAD synthetase [Helicobacter pylori 908]
 gi|325995617|gb|ADZ51022.1| NAD synthetase [Helicobacter pylori 2018]
 gi|325997213|gb|ADZ49421.1| NAD synthetase [Helicobacter pylori 2017]
          Length = 260

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSVSMPESKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       + +        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDKIFGSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                   + L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SNSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I DK  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILDKPPSADL-FVGQSDEKDLGYPY 200


>gi|282879609|ref|ZP_06288340.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella timonensis CRIS 5C-B1]
 gi|281306557|gb|EFA98586.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella timonensis CRIS 5C-B1]
          Length = 514

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL +  G ++  +     +               
Sbjct: 206 ELKQQLGNDRVILGLSGGVDSSVCATLLNKAIGKNLTCIF---VDHGM--------LRKD 254

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +     +  + + ++    D  ++F              G T     +  R +   D + 
Sbjct: 255 EFKRVMKAYEGLGLNVIGVDASKKFFQD---------LKGVT---DPEEKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR + +++ + 
Sbjct: 349 EMKLKLCEPLQWLFKDEVRRVGQQLEMP 376


>gi|262306007|gb|ACY45596.1| gln amidotransferase [Abacion magnum]
          Length = 197

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 17/81 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AALL +   D  VI + +     RK+  +             +
Sbjct: 43  DNKVLMLLSGGVDSTVCAALLHKALKDDQVIALHIDNGFMRKSESQ-------------Q 89

Query: 78  RVC--DTINVSHYVFDYEERF 96
            V   + I +   V + +  F
Sbjct: 90  VVASLNKIGLKVEVINCKHTF 110


>gi|189029594|sp|Q0I671|QUEC_SYNS3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 226

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 23/198 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+  AAL  + G+ VIG+          S   G     +++  A  +   +
Sbjct: 7   IALLSGGLDSATAAALAIKSGFRVIGL----------SFDYGQ-RHRRELDAAVEIAKAL 55

Query: 84  NV-SHYVFDYEERFR--NAVIVPF----ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           N+  H+  + +      +++         S       P   V    TV  +  LS+    
Sbjct: 56  NLAEHHTINVDLAMWGGSSLTDHAQTLPTSGVETSIIPNTYVPGRNTVFIAIGLSLAEAR 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD L  G  + +  Y G    R   +    DL  D S             L  PL +  
Sbjct: 116 GADRLVLG--VNAVDYSGYPDCRPDYLEAFQDLA-DLSSRAGREGHG--PKLWAPLVEWS 170

Query: 197 KESVRDLAREMGLDIADK 214
           K+ + + A  +G+ I   
Sbjct: 171 KQQIAEEALHLGIPIERT 188


>gi|113953927|ref|YP_732051.1| exsB protein [Synechococcus sp. CC9311]
 gi|113881278|gb|ABI46236.1| exsB protein [Synechococcus sp. CC9311]
          Length = 237

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 23/198 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+  AAL  + G+ VIG+          S   G     +++  A  +   +
Sbjct: 18  IALLSGGLDSATAAALAIKSGFRVIGL----------SFDYGQ-RHRRELDAAVEIAKAL 66

Query: 84  NV-SHYVFDYEERFR--NAVIVPF----ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           N+  H+  + +      +++         S       P   V    TV  +  LS+    
Sbjct: 67  NLAEHHTINVDLAMWGGSSLTDHAQTLPTSGVETSIIPNTYVPGRNTVFIAIGLSLAEAR 126

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GAD L  G  + +  Y G    R   +    DL  D S             L  PL +  
Sbjct: 127 GADRLVLG--VNAVDYSGYPDCRPDYLEAFQDLA-DLSSRAGREGHG--PKLWAPLVEWS 181

Query: 197 KESVRDLAREMGLDIADK 214
           K+ + + A  +G+ I   
Sbjct: 182 KQQIAEEALHLGIPIERT 199


>gi|113868782|ref|YP_727271.1| PP-loop superfamily ATPase [Ralstonia eutropha H16]
 gi|123032775|sp|Q0K7W8|QUEC_RALEH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|113527558|emb|CAJ93903.1| Predicted PP-loop superfamily ATPase [Ralstonia eutropha H16]
          Length = 227

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +V +SGG+DS+ V A+ +  G++   ++++                  ++  ARRV 
Sbjct: 3  KRAIVLLSGGLDSATVLAMARAQGFETYALSMRY-----------GQRHSSELEAARRVA 51

Query: 81 DTIN-VSHYVFDY 92
            +    H + D 
Sbjct: 52 AALGATRHEIIDL 64


>gi|332036526|gb|EGI72994.1| queuosine biosynthesis QueC ATPase [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 218

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V     + G+DV  +          S   G     +++  A  VC
Sbjct: 3  QKVVVIYSGGMDSFTVLNKALQQGHDVYAL----------SFDYGQ-RHVKELKVAASVC 51

Query: 81 DTINVSHYVFDYE 93
          + +NV H + D  
Sbjct: 52 EKLNVPHKIVDIS 64


>gi|330892534|gb|EGH25195.1| argininosuccinate synthase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 402

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 3   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 50

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 51  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 104

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 105 NETGADAISHG 115


>gi|315651082|ref|ZP_07904116.1| GMP synthase [Eubacterium saburreum DSM 3986]
 gi|315486672|gb|EFU77020.1| GMP synthase [Eubacterium saburreum DSM 3986]
          Length = 517

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 32/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A +L +  G ++  V     +     K +G         +   
Sbjct: 218 NGKVLCALSGGVDSSVAAVMLSKAVGENLTCVF---VDHGLLRKNEGDEVEAVFGPNG-- 272

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 ++    +  ERF +    V  P       GE                     ++
Sbjct: 273 ---NYKLNFIRVNAAERFYSKLAGVSEPEKKRKIIGEEF-----------IRVFEEEAKK 318

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +G  D L  G      +  G  G+   I        +               ++  PL D
Sbjct: 319 IGKIDFLVQGTIYPDVVESGLGGESVVI--------KSHHNVGGLPDYVDFKEIIEPLRD 370

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+G+ 
Sbjct: 371 LFKDEVRKAGLELGIP 386


>gi|262306087|gb|ACY45636.1| gln amidotransferase [Periplaneta americana]
          Length = 197

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI V +     RK   ++               
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALREDQVIAVHIDNGFMRKNESQRVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERF 96
            + + +   V +   +F
Sbjct: 95  -EKLGLRLKVINASHQF 110


>gi|325981798|ref|YP_004294200.1| argininosuccinate synthase [Nitrosomonas sp. AL212]
 gi|325531317|gb|ADZ26038.1| argininosuccinate synthase [Nitrosomonas sp. AL212]
          Length = 404

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V+A SGG+D+SV+   L+   Y    VT                  G++V  AR    
Sbjct: 6   KAVLAFSGGLDTSVILKWLQDT-YQCEVVTF-----------TADIGQGEEVEPARAKAK 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R +       + 
Sbjct: 54  QLGVKEIYIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------EIA 107

Query: 134 RQLGADVLATG 144
           ++ GAD ++ G
Sbjct: 108 KETGADAVSHG 118


>gi|261368759|ref|ZP_05981642.1| argininosuccinate synthase [Subdoligranulum variabile DSM 15176]
 gi|282569181|gb|EFB74716.1| argininosuccinate synthase [Subdoligranulum variabile DSM 15176]
          Length = 412

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 27/140 (19%)

Query: 14  LDKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + KN +D  +VV+A SGG+D+S++   LK             YN+ +     G    G +
Sbjct: 1   MKKNKEDIKKVVLAYSGGLDTSIIIPWLKE-----------NYNNCEVIAVSGDVGQGTE 49

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPL-PCVDCNRTV 124
           +               YV D ++ +    I P          Y  G +   PC+      
Sbjct: 50  LDGLEEKAIKTGASKLYVLDLKKDYIENYIWPCLKADAKYEDYLLGTSHARPCIA----- 104

Query: 125 KFSDLLSVTRQLGADVLATG 144
               L  + ++ GAD +  G
Sbjct: 105 --KALADIAKKEGADAICHG 122


>gi|295397034|ref|ZP_06807148.1| GMP synthase [Aerococcus viridans ATCC 11563]
 gi|294974725|gb|EFG50438.1| GMP synthase [Aerococcus viridans ATCC 11563]
          Length = 528

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 36/196 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V++ +SGGVDSSVV  LL++     IG         + +         +   +A  V
Sbjct: 233 EGKVLLGLSGGVDSSVVGVLLQKA----IG--------DQLTCIFVDHGLLRK-NEAEEV 279

Query: 80  CDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +T+     ++    D E+RF + +                 V               ++
Sbjct: 280 METLGGKFGLNIIKVDAEDRFLSKLAGVSDPERKRKIIGNEFVY--------VFDDEAQK 331

Query: 136 L-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +   D LA G      +  G D  +     +           +    +     L  PL  
Sbjct: 332 IKDVDYLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLPEDMTFSLIEPLNT 381

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+G+ 
Sbjct: 382 LFKDEVRAVGTELGMP 397


>gi|262306103|gb|ACY45644.1| gln amidotransferase [Scutigerella sp. 'Scu3']
          Length = 197

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +   +  VI + +          RKG     +      
Sbjct: 43  ENKVLMLVSGGVDSTVCAALLHKALKEDQVIALHINN-----GFMRKGETQQVETSL--- 94

Query: 78  RVCDTINVSHYVFDYEERF 96
                I +   V +   RF
Sbjct: 95  ---RKIGLKLKVVNASHRF 110


>gi|169824591|ref|YP_001692202.1| NH(3)-dependent NAD synthetase [Finegoldia magna ATCC 29328]
 gi|238687755|sp|B0S1S2|NADE_FINM2 RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|167831396|dbj|BAG08312.1| NH(3)-dependent NAD synthetase [Finegoldia magna ATCC 29328]
          Length = 241

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 43/186 (23%)

Query: 26  AMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
            +SGG+DS+V+A L K+  G + +G+ +                  +D  DAR +  +I 
Sbjct: 29  GISGGIDSAVLACLCKKAFGDNALGLIM------------PIKSNPKDEEDARILAKSIG 76

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +     D  E + +A+I  F       +  +     N   +              ++   
Sbjct: 77  LRFTKVDLNESY-DALIGTF------EKNSVEMAASNIKPRLR------------MITLY 117

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           +Y ++  Y+   G  R         +   S                PL ++ K  + ++A
Sbjct: 118 YYAQNNGYMVLSGSNRSEFMTGYFTKYGDSGAD-----------LMPLLNLYKTDIFEMA 166

Query: 205 REMGLD 210
           + +G+ 
Sbjct: 167 KVLGVP 172


>gi|55958408|emb|CAI16158.1| argininosuccinate synthetase 1 [Homo sapiens]
          Length = 198

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|83595080|ref|YP_428832.1| argininosuccinate synthase [Rhodospirillum rubrum ATCC 11170]
 gi|83577994|gb|ABC24545.1| argininosuccinate synthase [Rhodospirillum rubrum ATCC 11170]
          Length = 419

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + YD   VT                  G+++  AR+  
Sbjct: 22  KKVVLAYSGGLDTSIILRWLQDE-YDCEVVTF-----------TADIGQGEELEPARQKA 69

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-----DCNRTVKFSDLLSVTR 134
           + + +   Y+ D  E F    + P         T    V        R +    L+ +  
Sbjct: 70  EMMGIKEIYIEDLREEFVRDYVFPMF----RANTLYEGVYLLGTSIARPLIGKRLVEIAE 125

Query: 135 QLGADVLATG 144
             GAD ++ G
Sbjct: 126 ATGADAVSHG 135


>gi|325187233|emb|CCA21772.1| tRNA(Ile)lysidine synthase putative [Albugo laibachii Nc14]
          Length = 660

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 37/199 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            D  V V++SGGVDS V+A LL +       Y ++ + +   +     +    C   +  
Sbjct: 220 SDTPVAVSLSGGVDSMVLAYLLHKVRLSSHYYGIVAIHI---DYGNRPESAAECSYVKYW 276

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSV 132
                 CD +++  Y                      GET         R +++S   S+
Sbjct: 277 ------CDRLDIQFY-------------ARRIDEVTRGETKRDEYEKIARDIRYSTYRSI 317

Query: 133 TRQLGADVLATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +     +  GH+    +  V  +  +   +     +   ++         +      P
Sbjct: 318 LEKHSIPGICFGHHRGDVQENVVSNMMKGLSLLSLNGMS--ETSTANGVVIWR------P 369

Query: 192 LGDMKKESVRDLAREMGLD 210
           + +  K ++ D A   G+ 
Sbjct: 370 MLEFDKSTIFDFAHRYGIP 388


>gi|309388744|gb|ADO76624.1| argininosuccinate synthase [Halanaerobium praevalens DSM 2228]
          Length = 403

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++++A SGG+D+SV    L  D Y+   +T         +   G      D  +A+ + 
Sbjct: 7   KKILLAYSGGLDTSVAIKWL-EDKYEAEIIT--------YTAHLGQ-PQAWDAVEAKALA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
            T     Y+ D  E F    I P     A  +   P      R +    ++ + ++ G D
Sbjct: 57  -TGATKAYIDDIREEFITDYIYPALKVNAMYQEKYPLATALARPLIAKRMVEIAKKEGVD 115

Query: 140 VLATG 144
            LA G
Sbjct: 116 ALAHG 120


>gi|307243871|ref|ZP_07525996.1| PP-loop family protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492693|gb|EFM64721.1| PP-loop family protein [Peptostreptococcus stomatis DSM 17678]
          Length = 296

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A + +         ++V+ + +                    
Sbjct: 54  EGDKIAVAISGGKDSILMAKMFQELKRHSPVNFEVVYIGM--------DPGYHETIRDIL 105

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + +AR     + +   VFD  + F   V    AS Y       PC  C   ++   L   
Sbjct: 106 LDNAR----YLEIPIQVFD-SQIF--EVADRIASDY-------PCYMC-ARMRRGALYGK 150

Query: 133 TRQLGADVLATGHY 146
              LG + LA GH+
Sbjct: 151 AEALGCNKLALGHH 164


>gi|253996052|ref|YP_003048116.1| NAD+ synthetase [Methylotenera mobilis JLW8]
 gi|253982731|gb|ACT47589.1| NAD+ synthetase [Methylotenera mobilis JLW8]
          Length = 539

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 36/180 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++  AL     G D V  V +                A   V DAR + 
Sbjct: 278 VVIGLSGGVDSALTLALAVDAIGADKVHAVMM-----------PSEFTADISVNDAREMA 326

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA------GETPLPCVDCNRTVKFSDLLSVTR 134
           D + V          +    I P   SY +      G+ P    + N   +   +L +  
Sbjct: 327 DIVGVK---------YEEIAIKPLFDSYLSALSPQFGDMPFDATEENLQARIRGMLLMAI 377

Query: 135 QLGADVLATGHYIRSRLYVG-----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                 +      +S + VG      D      + +  D+ +   Y L A  + QL  + 
Sbjct: 378 SNKFGSIVVTTGNKSEMAVGYCTLYGDMAGGFALLK--DVPKTLVYRLCA-YRNQLSRVI 434


>gi|229588695|ref|YP_002870814.1| argininosuccinate synthase [Pseudomonas fluorescens SBW25]
 gi|259585366|sp|C3KBZ2|ASSY_PSEFS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|229360561|emb|CAY47418.1| argininosuccinate synthase [Pseudomonas fluorescens SBW25]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|224024379|ref|ZP_03642745.1| hypothetical protein BACCOPRO_01103 [Bacteroides coprophilus DSM
           18228]
 gi|224017601|gb|EEF75613.1| hypothetical protein BACCOPRO_01103 [Bacteroides coprophilus DSM
           18228]
          Length = 246

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD 46
           + +VV+ +SGGVDSSV A LL   GY 
Sbjct: 213 NDKVVLGLSGGVDSSVAAVLL-NKGYR 238


>gi|158259689|dbj|BAF85803.1| unnamed protein product [Homo sapiens]
          Length = 412

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|167754461|ref|ZP_02426588.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
 gi|167659086|gb|EDS03216.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
          Length = 448

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 20/125 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +++ +SGGVDS V+ +L  R GY V GV    +  R     +       D    RR  + 
Sbjct: 23  ILLTVSGGVDSMVMLSLFVRSGYRV-GVAHCNFQLRGVESEE-------DEELVRREAEK 74

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V  Y               F +      T        R ++++    ++R+ G  V+A
Sbjct: 75  YGVPWYN------------KRFDTKGEMERTGESMEMAARRLRYAWFDELSREHGYTVVA 122

Query: 143 TGHYI 147
             H+I
Sbjct: 123 IAHHI 127


>gi|48477224|ref|YP_022930.1| ATPase of the PP-loop superamily [Picrophilus torridus DSM 9790]
 gi|48429872|gb|AAT42737.1| ATPases of the PP-loop superamily [Picrophilus torridus DSM 9790]
          Length = 312

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 25/130 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-------SKRKGSCCAGQDVYD 75
           + VA+SGG DS V   +L            ++ + R+             S      +  
Sbjct: 51  ISVAISGGKDSLVTLYVLN-----------KILSDRRNLKIKAFTVDEGISGYRPSGIEK 99

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCNRTVKFSDLLSVTR 134
           A R+C ++ + H +  ++  F             +   T + C  C   ++ S +  ++ 
Sbjct: 100 AARLCKSLGIDHEIISFKHEF-----GYTLDEIMSIDNTRISCSHCGP-MRRSLMNKISM 153

Query: 135 QLGADVLATG 144
              AD LA G
Sbjct: 154 YNKADYLALG 163


>gi|328947848|ref|YP_004365185.1| argininosuccinate synthase [Treponema succinifaciens DSM 2489]
 gi|328448172|gb|AEB13888.1| Argininosuccinate synthase [Treponema succinifaciens DSM 2489]
          Length = 454

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D++V+   LK +  YDVI V + +         K      + +    
Sbjct: 35  KKDKVVLAYSGGLDTTVIIPWLKENYDYDVIAVCIDVGQGDDWKAIKS-----RALKTGA 89

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGE-TPLPCVDCNRTVKFSDL 129
             C       YV D  + +    + P           Y  G  T  P +          L
Sbjct: 90  SAC-------YVVDARQEYIEEYVWPALKSNAIYEDEYLLGTSTARPLIG-------KIL 135

Query: 130 LSVTRQLGADVLATG 144
           +   RQ  A  +  G
Sbjct: 136 VEYARQEKAVAICHG 150


>gi|323486022|ref|ZP_08091353.1| GMP synthase [Clostridium symbiosum WAL-14163]
 gi|323400589|gb|EGA92956.1| GMP synthase [Clostridium symbiosum WAL-14163]
          Length = 513

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R + A+SGGVDSSV A ++ +  G  +  V     +     K +G         + +   
Sbjct: 217 RALCALSGGVDSSVAAVMMAKAIGKQLTCVF---VDHGLLRKNEGDEVEAIFGPEGQ--- 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
              +++    + +ERF   +     +           +     ++        +++G  D
Sbjct: 271 --YDLNFVRVNAQERFYEKLAGVSDTEQKRK------IIGEEFIRV--FEEEAKKIGKVD 320

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            L  G        V + G  +  + +           +    +     ++  PL  + K+
Sbjct: 321 FLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKEIIEPLRMLFKD 370

Query: 199 SVRDLAREMGLD 210
            VR    E+G+ 
Sbjct: 371 EVRKAGLELGIP 382


>gi|312959246|ref|ZP_07773764.1| Argininosuccinate synthase [Pseudomonas fluorescens WH6]
 gi|311286506|gb|EFQ65069.1| Argininosuccinate synthase [Pseudomonas fluorescens WH6]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|312136595|ref|YP_004003932.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311224314|gb|ADP77170.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 306

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 30/139 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAA----LLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQ 71
           K  RV+  +SGG DS V       +L   G    +V+ V                    +
Sbjct: 47  KGDRVLAGVSGGKDS-VAMLDILNILHERGIIELEVLTV-----------DEGIKNYREK 94

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            +  A+     + + H++  +++ F    + ++    S+   G    PC  C    ++  
Sbjct: 95  TLEIAKYHTKRLGIPHHIVKFKDCFGITLDEIVS---SNVERG----PCTYCGVFRRW-I 146

Query: 129 LLSVTRQLGADVLATGHYI 147
              + ++L AD +A  H +
Sbjct: 147 FNKIGKKLEADKIAIAHNL 165


>gi|302876712|ref|YP_003845345.1| PP-loop domain-containing protein [Clostridium cellulovorans 743B]
 gi|307687388|ref|ZP_07629834.1| PP-loop domain-containing protein [Clostridium cellulovorans 743B]
 gi|302579569|gb|ADL53581.1| PP-loop domain protein [Clostridium cellulovorans 743B]
          Length = 290

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A L +         ++V  + +                   +
Sbjct: 52  EGDKIAVAISGGKDSLLMAKLFQELLKHKKMNFEVEFIAM-----DPGYHESIRTLLEDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +         + +  ++F+  + F   V    A  Y       PC  C   ++   L S 
Sbjct: 107 LKY-------LEIDAHIFN-ADIF--EVAEKIAQDY-------PCYMC-AKMRRGVLYSK 148

Query: 133 TRQLGADVLATGHY 146
            ++LG + LA GH+
Sbjct: 149 AQELGCNKLALGHH 162


>gi|227874307|ref|ZP_03992494.1| argininosuccinate synthase [Oribacterium sinus F0268]
 gi|227839858|gb|EEJ50301.1| argininosuccinate synthase [Oribacterium sinus F0268]
          Length = 414

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKG 65
           + S+  + N K  ++++A SGG+D    A +  LK + GY V+ V + +    + S    
Sbjct: 1   MGSMIPEGNTKGEKIILAYSGGLD--TTAIIPWLKENFGYKVVCVCVDVGQEEELSDLPE 58

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                          + + + H     ++ F    ++P   + A  E             
Sbjct: 59  RAKLSG--------AEKLYIEHI----QDEFCEEYVLPCIQANACYENKYLLGTSMARPA 106

Query: 126 FSD-LLSVTRQLGADVLATG 144
            +  L+ + ++ GA  +  G
Sbjct: 107 IAKRLVEIAKKEGASAICHG 126


>gi|186513287|ref|NP_001119047.1| arginosuccinate synthase family [Arabidopsis thaliana]
          Length = 450

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 27/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +V+  T        A   +G          A+
Sbjct: 95  KLKKVVLAYSGGLDTSVIVPWLKENYGCEVVCFT--------ADVGQGIKELEGLEQKAK 146

Query: 78  RV-CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
                 +     V D  E F    I P           Y  G +        R V    +
Sbjct: 147 ASGASQL----VVKDLTEEFVKDFIFPCLRAGAIYERKYLLGTSMA------RPVIAKAM 196

Query: 130 LSVTRQLGADVLATG 144
           + V  ++GAD +A G
Sbjct: 197 VDVAAEVGADAVAHG 211


>gi|192065|gb|AAB60706.1| argininosuccinate synthetase [Mus musculus]
          Length = 199

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARRQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|71736983|ref|YP_276023.1| argininosuccinate synthase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|237798776|ref|ZP_04587237.1| argininosuccinate synthase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|257486626|ref|ZP_05640667.1| argininosuccinate synthase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289650465|ref|ZP_06481808.1| argininosuccinate synthase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289676757|ref|ZP_06497647.1| argininosuccinate synthase [Pseudomonas syringae pv. syringae FF5]
 gi|302184718|ref|ZP_07261391.1| argininosuccinate synthase [Pseudomonas syringae pv. syringae 642]
 gi|119361306|sp|Q48F14|ASSY_PSE14 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|71557536|gb|AAZ36747.1| argininosuccinate synthase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320327086|gb|EFW83100.1| argininosuccinate synthase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330879062|gb|EGH13211.1| argininosuccinate synthase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330937556|gb|EGH41497.1| argininosuccinate synthase [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330981563|gb|EGH79666.1| argininosuccinate synthase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
 gi|330989531|gb|EGH87634.1| argininosuccinate synthase [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010108|gb|EGH90164.1| argininosuccinate synthase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331021629|gb|EGI01686.1| argininosuccinate synthase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|77460738|ref|YP_350245.1| argininosuccinate synthase [Pseudomonas fluorescens Pf0-1]
 gi|119361310|sp|Q3K7K0|ASSY_PSEPF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|77384741|gb|ABA76254.1| argininosuccinate synthase [Pseudomonas fluorescens Pf0-1]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|22328910|ref|NP_194214.2| arginosuccinate synthase family [Arabidopsis thaliana]
 gi|78099761|sp|Q9SZX3|ASSY_ARATH RecName: Full=Argininosuccinate synthase, chloroplastic; AltName:
           Full=Citrulline--aspartate ligase; Flags: Precursor
 gi|17529036|gb|AAL38728.1| putative argininosuccinate synthase [Arabidopsis thaliana]
 gi|20259085|gb|AAM14258.1| putative argininosuccinate synthase [Arabidopsis thaliana]
          Length = 494

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 27/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +V+  T        A   +G          A+
Sbjct: 95  KLKKVVLAYSGGLDTSVIVPWLKENYGCEVVCFT--------ADVGQGIKELEGLEQKAK 146

Query: 78  RV-CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
                 +     V D  E F    I P           Y  G +        R V    +
Sbjct: 147 ASGASQL----VVKDLTEEFVKDFIFPCLRAGAIYERKYLLGTSMA------RPVIAKAM 196

Query: 130 LSVTRQLGADVLATG 144
           + V  ++GAD +A G
Sbjct: 197 VDVAAEVGADAVAHG 211


>gi|330966672|gb|EGH66932.1| argininosuccinate synthase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 405

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|327404903|ref|YP_004345741.1| GMP synthase [Fluviicola taffensis DSM 16823]
 gi|327320411|gb|AEA44903.1| GMP synthase (glutamine-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 515

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 40/206 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +L     + +V++ +SGGVDSSV A +L R     IG  L          RK        
Sbjct: 211 ELKAKLGNDKVILGLSGGVDSSVAAMILHRA----IGSNLHCIFVDNGLLRKNE--FDSV 264

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF------ 126
           +   +     + ++    +  E F  A          +G T  P +      K       
Sbjct: 265 LESYKG----LGLNVKGVNASEDFYKA---------LSGLTD-PELKRKAIGKVFVDVFD 310

Query: 127 --SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
             S L++  + LG   +         +  G     +                +       
Sbjct: 311 AESKLVTDAKWLGQGTIYPDVIESVSVNGGPSQTIKSHHN------------VGGLPDYM 358

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              +  PL  + K+ VR + R + L 
Sbjct: 359 KLQVVEPLRLLFKDEVRRVGRSLELP 384


>gi|315126984|ref|YP_004068987.1| regulator protein [Pseudoalteromonas sp. SM9913]
 gi|315015498|gb|ADT68836.1| regulator protein [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V     + G+DV  +          S   G     +++  A  VC
Sbjct: 3  QKVVVIYSGGMDSFTVLNKALQQGHDVYAL----------SFDYGQ-RHVKELKVAASVC 51

Query: 81 DTINVSHYVFDYE 93
          + +NV H + D  
Sbjct: 52 EKLNVPHKIVDIS 64


>gi|296227744|ref|XP_002759511.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] [Callithrix
           jacchus]
          Length = 693

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 65/213 (30%), Gaps = 45/213 (21%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL---ERDQSYFLFATTQQ 183
              + +  +     +     ++        G  R  +     L    + +         +
Sbjct: 342 DTFVKIASE-----VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 184 QLCDL------RFPLGDMKKESVRDLAREMGLD 210
            +  L        PL D  K+ VR L RE+GL 
Sbjct: 397 LIRKLREEGRVIEPLKDFHKDEVRILGRELGLP 429


>gi|159041767|ref|YP_001541019.1| GMP synthase domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920602|gb|ABW02029.1| GMP synthase domain protein [Caldivirga maquilingensis IC-167]
          Length = 377

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 44/197 (22%)

Query: 24  VVAMSGGVD---SSVVAALLKRDGYDVIGV-----TLQLYNSRKASKRKGSCCAGQDVYD 75
           V A+SGGVD   S+VVA L    G  +I V      ++L  + +                
Sbjct: 24  VAAVSGGVDSTTSAVVARLAL--GDRLIPVLFDTGFMRLNETSEIIN------------- 68

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              + + + +     D ++ F  A+I    +      T        R V ++ L  V + 
Sbjct: 69  --SLTELLPIRL--IDVKDEFYRAMINLSDAEEKR-LTF-------RNVFYNALSRVVKD 116

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              D +  G      +      K +  +   + +E D+ Y            L  PL D+
Sbjct: 117 NDCDWVVQGTIAPDWIETTGGIKTQHNVLAQLGIETDKVYGF---------KLLEPLKDL 167

Query: 196 KKESVRDLAREMGLDIA 212
            K+ VR LAR + +  A
Sbjct: 168 YKDQVRALARYLKIPSA 184


>gi|16950633|ref|NP_446464.1| argininosuccinate synthase [Homo sapiens]
 gi|53759107|ref|NP_000041.2| argininosuccinate synthase [Homo sapiens]
 gi|20141195|sp|P00966|ASSY_HUMAN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|14328059|gb|AAH09243.1| Argininosuccinate synthetase 1 [Homo sapiens]
 gi|18203822|gb|AAH21676.1| Argininosuccinate synthetase 1 [Homo sapiens]
 gi|19482138|gb|AAK67487.1| argininosuccinate synthetase [Homo sapiens]
 gi|55958410|emb|CAI16160.1| argininosuccinate synthetase 1 [Homo sapiens]
 gi|119608338|gb|EAW87932.1| argininosuccinate synthetase, isoform CRA_a [Homo sapiens]
 gi|119608341|gb|EAW87935.1| argininosuccinate synthetase, isoform CRA_a [Homo sapiens]
 gi|189054708|dbj|BAG37558.1| unnamed protein product [Homo sapiens]
 gi|190690279|gb|ACE86914.1| argininosuccinate synthetase 1 protein [synthetic construct]
 gi|190691653|gb|ACE87601.1| argininosuccinate synthetase 1 protein [synthetic construct]
 gi|261858400|dbj|BAI45722.1| argininosuccinate synthetase 1 [synthetic construct]
          Length = 412

 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|330811341|ref|YP_004355803.1| Argininosuccinate synthase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379449|gb|AEA70799.1| Argininosuccinate synthase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|320325630|gb|EFW81692.1| argininosuccinate synthase [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|296191017|ref|XP_002743443.1| PREDICTED: argininosuccinate synthase isoform 1 [Callithrix
           jacchus]
 gi|296191019|ref|XP_002743444.1| PREDICTED: argininosuccinate synthase isoform 2 [Callithrix
           jacchus]
          Length = 412

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|222445462|ref|ZP_03607977.1| hypothetical protein METSMIALI_01101 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349976|ref|ZP_05975393.1| NAD+ synthetase [Methanobrevibacter smithii DSM 2374]
 gi|222435027|gb|EEE42192.1| hypothetical protein METSMIALI_01101 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860759|gb|EFC93057.1| NAD+ synthetase [Methanobrevibacter smithii DSM 2374]
          Length = 266

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 47/192 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A L     G + V G+ +             +    +D      +  
Sbjct: 33  VVGLSGGIDSTLTAYLATEAVGKENVFGIVM-----------PSTTTPTEDKIHGTDIAK 81

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQLGA 138
            +++     DY+E   ++V+  F       +T    +        ++ S +       G 
Sbjct: 82  ILDI-----DYKEMAIDSVLNEFLY-VTQYKTENEQLAIGNLKARIRMSIIYYYANSKG- 134

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L +G   +S + +G   K         D+E                    P+GD+ K 
Sbjct: 135 -YLVSGTGNKSEILIGYFTKHGDG---ACDIE--------------------PIGDLYKT 170

Query: 199 SVRDLAREMGLD 210
            V +LA+ MG+ 
Sbjct: 171 DVFELAKYMGVP 182


>gi|66047119|ref|YP_236960.1| argininosuccinate synthase [Pseudomonas syringae pv. syringae
           B728a]
 gi|75500941|sp|Q4ZPK0|ASSY_PSEU2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|63257826|gb|AAY38922.1| Argininosuccinate synthase [Pseudomonas syringae pv. syringae
           B728a]
 gi|330949997|gb|EGH50257.1| argininosuccinate synthase [Pseudomonas syringae Cit 7]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|326802565|ref|YP_004320384.1| NAD+ synthetase [Sphingobacterium sp. 21]
 gi|326553329|gb|ADZ81714.1| NAD+ synthetase [Sphingobacterium sp. 21]
          Length = 547

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + ++ +SGG+DS+VVAAL     G  +V+GV +                 G  V DA  
Sbjct: 291 KKAILGLSGGIDSAVVAALACEALGSTNVMGVLM-----------PSIYSTGHSVDDAMD 339

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           +   +   H V   +E           +    G+
Sbjct: 340 LVGNLGCLHEVIPIKEA--TEAFDNMMAKAFKGK 371


>gi|164687571|ref|ZP_02211599.1| hypothetical protein CLOBAR_01212 [Clostridium bartlettii DSM
           16795]
 gi|164603345|gb|EDQ96810.1| hypothetical protein CLOBAR_01212 [Clostridium bartlettii DSM
           16795]
          Length = 250

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 41/192 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DS+VV  L+K+   +  IGV + +                +D  DA +V + 
Sbjct: 27  VVGVSGGIDSAVVCYLIKKAFPENSIGVIMSI------------NSNPKDREDALKVING 74

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             + +   D  +  +  ++    S+                +K  DL S +        A
Sbjct: 75  CGIDYIDLDLTKP-QEMILNSVTSA----------------LKEKDLYSES-----GFRA 112

Query: 143 TGHYIRSRL---YVGDDGKRRRIMCRPMDLERD-QSYFLFATTQQQLCDLRFPLGDMKKE 198
               +R+R+    V         +    D   +  + +        +     P+ ++ K 
Sbjct: 113 ADSNLRARVRMCSVYTVANNLGYLVVGTDNAAEIHTGYFTKYGDGGVD--LVPIANLTKA 170

Query: 199 SVRDLAREMGLD 210
            V D AR +G+ 
Sbjct: 171 EVYDWARALGVH 182


>gi|148700170|gb|EDL32117.1| mCG15755 [Mus musculus]
          Length = 412

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARRQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|147678963|ref|YP_001213178.1| PP family ATPase [Pelotomaculum thermopropionicum SI]
 gi|146275060|dbj|BAF60809.1| ATP-utilizing enzymes of the PP-loop superfamily [Pelotomaculum
           thermopropionicum SI]
          Length = 359

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 47/214 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGG DS+    LL +   DV+G      +   A           +  +A  +   
Sbjct: 108 VLVAFSGGADST----LLLKVARDVLG------DKVLAVTAASEIYPPGEAAEAGELARA 157

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I   H VF  +            S+      P  C  C + + +++LL + R+ G   +A
Sbjct: 158 IGAEHIVFTAKGL---------KSAAFRNNPPDRCYHCKKEI-YTELLKLARERGIKCVA 207

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G      +   D    R  +   ++L                  ++ PL +  + K+ +
Sbjct: 208 DG------VNADDAADYRPGIRAGIELG-----------------VKAPLKEAGLTKQEI 244

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             L+R++GL  A K  +   C   +  Y   + R
Sbjct: 245 HALSRQLGLPTAGKPANP--CLASRFPYGTEITR 276


>gi|126465357|ref|YP_001040466.1| thiamine biosynthesis protein [Staphylothermus marinus F1]
 gi|126014180|gb|ABN69558.1| thiamine biosynthesis protein [Staphylothermus marinus F1]
          Length = 375

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 34/192 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGGVDSS+ A    + G  +I V + L        R             RR  + +
Sbjct: 168 VVLLSGGVDSSLAAWYAMKRGARIIPVFIDLGKYWSEQAR-------------RRFYEAL 214

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-ADVLA 142
           ++ +          + +                    N   +   LL        A ++A
Sbjct: 215 SLVYEWVP-----WDKIKTYIVRGAEK-----ILESTNIPARLRCLLCKANMYRIASIIA 264

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                   +     G+      R         Y L + + + +     P+  M K  + +
Sbjct: 265 DKEECLGIVTGEAVGQVASQTLR-------NLYILSSISPKPIYR---PVAFMDKLEIIE 314

Query: 203 LAREMGLDIADK 214
            AR++G  I  +
Sbjct: 315 QARKLGFHILSR 326


>gi|119608339|gb|EAW87933.1| argininosuccinate synthetase, isoform CRA_b [Homo sapiens]
          Length = 450

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 45  VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 97

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 98  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 145

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 146 REGAKYVSHG 155


>gi|119608340|gb|EAW87934.1| argininosuccinate synthetase, isoform CRA_c [Homo sapiens]
          Length = 393

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|70732178|ref|YP_261934.1| argininosuccinate synthase [Pseudomonas fluorescens Pf-5]
 gi|119361308|sp|Q4K749|ASSY_PSEF5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|68346477|gb|AAY94083.1| argininosuccinate synthase [Pseudomonas fluorescens Pf-5]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|74146278|dbj|BAE28914.1| unnamed protein product [Mus musculus]
          Length = 412

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARRQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|28872|emb|CAA25771.1| unnamed protein product [Homo sapiens]
 gi|179057|gb|AAA51783.1| argininosuccinate synthetase [Homo sapiens]
          Length = 412

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|6996911|ref|NP_031520.1| argininosuccinate synthase [Mus musculus]
 gi|114290|sp|P16460|ASSY_MOUSE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|309111|gb|AAA37266.1| argininosuccinate synthetase (EC 6.3.4.5) [Mus musculus]
 gi|12805227|gb|AAH02074.1| Argininosuccinate synthetase 1 [Mus musculus]
 gi|56270570|gb|AAH87556.1| Argininosuccinate synthetase 1 [Mus musculus]
 gi|74144675|dbj|BAE27321.1| unnamed protein product [Mus musculus]
 gi|123228123|emb|CAM24505.1| argininosuccinate synthetase 1 [Mus musculus]
 gi|148676562|gb|EDL08509.1| mCG19004 [Mus musculus]
          Length = 412

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D  + F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARRQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|307198757|gb|EFN79560.1| Asparagine synthetase [glutamine-hydrolyzing] [Harpegnathos
           saltator]
          Length = 567

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 30/162 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D R+   +SGG+DSS+VAALL    K                +  S   G    G D+ 
Sbjct: 246 SDRRIGCLLSGGLDSSLVAALLTKLAKE----------HNLPYKIQSFAIGM-GDGPDII 294

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR+V + I   H+   + ++    V+     S    +           +    L    +
Sbjct: 295 AARQVAEYIGTEHHEIIFTQQDVMDVLDKVIYSLETYDITTIRASIGMYI----LSRYIK 350

Query: 135 QL----------GADVLATGH-YIRSRLYVGDDGKRRRIMCR 165
           Q           GAD +A G+ Y R      D       + +
Sbjct: 351 QNTETTVIFSGEGADEVAQGYIYFRDAPNAADAHNESLRLLK 392


>gi|212224155|ref|YP_002307391.1| hypothetical protein TON_1006 [Thermococcus onnurineus NA1]
 gi|212009112|gb|ACJ16494.1| ThiI-related protein [Thermococcus onnurineus NA1]
          Length = 196

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 49/233 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +S G+DS V   L+ R G ++  V  +  + +K SK    C             
Sbjct: 1   MKAVALLSSGIDSPVAIYLMLRKGMEITPVHFKQ-SDKKESKVLELCEILSKYG------ 53

Query: 81  DTINVSHYVFDYEERFRNA--VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR---Q 135
             +N    V    + +     V         A  T   C+ C    K++ L    R   +
Sbjct: 54  -KLNEPVIV----DAYEEQAPVFSKLVEIGKAKWT---CLFC----KYTMLRKACRVGHE 101

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA  + TG  +        D     I+ +  DL                  +  PL   
Sbjct: 102 IGAKAIVTGDSLGQVASQTLD--NLLIISQASDLP-----------------ILRPLIGR 142

Query: 196 KKESVRDLAREMGLDIADKSDSQDIC-FVQQ----GKYFDVVKRINAGIALEG 243
            KE +  +A+E+G       + ++ C FV +           ++I   +  EG
Sbjct: 143 DKEEIVKIAKEIG-TFEISIEPEEPCPFVPKYPVVRGSLGEFEKIREKLVKEG 194


>gi|163795297|ref|ZP_02189264.1| Argininosuccinate synthase [alpha proteobacterium BAL199]
 gi|159179283|gb|EDP63814.1| Argininosuccinate synthase [alpha proteobacterium BAL199]
          Length = 404

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 28/139 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  +PK  +VV+A SGG+D+S++   L+   Y+   VT                  G+D+
Sbjct: 1   MADSPK--KVVLAYSGGLDTSIILRWLQDT-YNCEVVTF-----------TADLGQGEDL 46

Query: 74  YDARRVCDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVK 125
             AR     + V      D  E F    + P           Y  G +    +   R + 
Sbjct: 47  EPARAKAKMMGVKEIFVEDLREEFVRDFVFPMFRANTLYEGCYLLGTSIARPLISKRQI- 105

Query: 126 FSDLLSVTRQLGADVLATG 144
                 + +  GAD +A G
Sbjct: 106 -----EIAQMTGADAVAHG 119


>gi|330973096|gb|EGH73162.1| argininosuccinate synthase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|322385509|ref|ZP_08059153.1| GMP synthase [Streptococcus cristatus ATCC 51100]
 gi|321270247|gb|EFX53163.1| GMP synthase [Streptococcus cristatus ATCC 51100]
          Length = 519

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 207 MDNFIDMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 261

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      ++     +     ++    D  +RF + +                 V   
Sbjct: 262 LRKGEADQVMEM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 315

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 316 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 359

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 360 EDMQFELIEPLNTLYKDEVRALGTELGMP 388


>gi|298293305|ref|YP_003695244.1| argininosuccinate synthase [Starkeya novella DSM 506]
 gi|296929816|gb|ADH90625.1| argininosuccinate synthase [Starkeya novella DSM 506]
          Length = 408

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  ARR 
Sbjct: 6   KKVVLAYSGGLDTSVILKWLQTTYGCEVVTFT-------------ADLGQGEELEPARRK 52

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
            + + +     ++ D  E F +  + P   +       Y  G +    +   + +     
Sbjct: 53  AELLGIKPENIFIEDVREEFVSEYVFPMFRANALYEGLYLLGTSIARPLISKKQI----- 107

Query: 130 LSVTRQLGADVLATG 144
             + RQ+GAD +A G
Sbjct: 108 -EIARQVGADAVAHG 121


>gi|225026806|ref|ZP_03715998.1| hypothetical protein EUBHAL_01058 [Eubacterium hallii DSM 3353]
 gi|224955813|gb|EEG37022.1| hypothetical protein EUBHAL_01058 [Eubacterium hallii DSM 3353]
          Length = 390

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 26/128 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV--- 79
           + V +SGG DS ++A L +          L+L+N     + K          + R+V   
Sbjct: 153 IAVCISGGKDSMLMAKLFQE---------LKLHNKFPF-EVKFVVMDPGYSPENRKVIEE 202

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +  ++      F + +     S Y   ++  PC  C   ++   L +  ++LG 
Sbjct: 203 NARKLKIPIHI------FESDIFE---SVYHIEKS--PCYLC-ARMRRGYLYNFAKELGC 250

Query: 139 DVLATGHY 146
           + +A GH+
Sbjct: 251 NKIALGHH 258


>gi|257059463|ref|YP_003137351.1| PP-loop domain protein [Cyanothece sp. PCC 8802]
 gi|256589629|gb|ACV00516.1| PP-loop domain protein [Cyanothece sp. PCC 8802]
          Length = 274

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGG+DS++VA +     YDV+G      +   A          +++ +A+    TI
Sbjct: 20  LIAYSGGIDSTLVAKIA----YDVLG------DRALAITAVSPSLLPEELEEAKIQAATI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H + +  E                      C  C   +    L  +  + G   +  
Sbjct: 70  GIKHELIETHEMDNPNYTSNPV---------NRCYFCKSEL-HDTLKPLALKRGYAYIVD 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G      +   D    R  +    +                    R PL +  + K  +R
Sbjct: 120 G------VNADDLQDYRPGIQAAKERG-----------------ARSPLAEVGLTKTEIR 156

Query: 202 DLAREMGLDIADKS 215
            L++++GL   DK 
Sbjct: 157 QLSQQLGLPWWDKP 170


>gi|184201195|ref|YP_001855402.1| argininosuccinate synthase [Kocuria rhizophila DC2201]
 gi|229889886|sp|B2GKD7|ASSY_KOCRD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|183581425|dbj|BAG29896.1| argininosuccinate synthase [Kocuria rhizophila DC2201]
          Length = 401

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+A SGG+D+SV    +        G       +   +        G+D+   R+   
Sbjct: 4   RVVLAYSGGLDTSVAIGWIGEA----TG-------AEVVAVAVDVGQGGEDLETIRQRAL 52

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D  + F +   +P   +        P V   +R V    L++  ++ GA 
Sbjct: 53  DCGAVEAYVADARDEFASEYCMPALQANGLYMDSYPLVSAVSRPVIVKHLVAAAKKFGAT 112

Query: 140 VLATG 144
            +A G
Sbjct: 113 TVAHG 117


>gi|168988983|pdb|2NZ2|A Chain A, Crystal Structure Of Human Argininosuccinate Synthase In
           Complex With Aspartate And Citrulline
          Length = 404

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 4   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 56

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 57  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 104

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 105 REGAKYVSHG 114


>gi|297582401|ref|YP_003698181.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10]
 gi|297140858|gb|ADH97615.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10]
          Length = 475

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 31/200 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV---C 80
           +VA+SGGVDS V+  LL          T +L  +  A              DA  V   C
Sbjct: 22  LVAVSGGVDSMVLLHLLHERR------T-RLSITLSAVHAHHHLRRESADRDAELVASFC 74

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  ++          +      + A            R +++     V  + GA+ 
Sbjct: 75  RELAIPFHLVHLSVEEERKLRNGSVQAVA------------RDLRYEAFRHVMTETGANR 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L T H+       GDD     ++    +  +  S         +   L  PL D +K S+
Sbjct: 123 LVTAHH-------GDDQIETVLLQLLRNTAQGGSGMRA-LRPIEGGTLIRPLLDTEKASL 174

Query: 201 RDLAREMGLDIADKSDSQDI 220
              A++ G+   +  +S D 
Sbjct: 175 YRYAKDSGIPFRED-ESNDS 193


>gi|313672706|ref|YP_004050817.1| argininosuccinate synthase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939462|gb|ADR18654.1| argininosuccinate synthase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 410

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 34/200 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   GYDV+     L         +      +      +   
Sbjct: 5   KVVLAYSGGLDTSVILKWLDLKGYDVVAYVADLGQRDDFKAIE-----EKAYKSGAK--- 56

Query: 82  TINVSHYVFDYEERF-RNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 YV D ++ F R+ V     F + Y  G   +      R V    ++ + R+ GA
Sbjct: 57  ----EFYVVDLKDYFVRDFVFTAIKFNAMYE-GRYLMGTSLA-RPVIAKGMVDIARKTGA 110

Query: 139 DVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
             +A G   +    V  +          + +   RD  +F     +              
Sbjct: 111 KYIAHGATGKGNDQVRFELSAAALYPELKAIVPWRDPEFFNVIKGR-------------- 156

Query: 197 KESVRDLAREMGLDIADKSD 216
            +   D ARE G+ +   +D
Sbjct: 157 -KEAMDFAREHGIPVKATAD 175


>gi|218134226|ref|ZP_03463030.1| hypothetical protein BACPEC_02116 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991601|gb|EEC57607.1| hypothetical protein BACPEC_02116 [Bacteroides pectinophilus ATCC
           43243]
          Length = 376

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 26/133 (19%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  R+ V +SGG DS ++A L +          L+++N      +      G    + R
Sbjct: 134 KKGDRIAVCISGGKDSMLMAKLFQE---------LKIHNKFPFEVKFIVMDPGYSPEN-R 183

Query: 78  RV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +V       +N+   +      F + +     S Y   ++  PC  C   ++   L S  
Sbjct: 184 KVIEDNARNLNIPITI------FESDIFE---SVYHIEKS--PCYLC-ARMRRGHLYSYA 231

Query: 134 RQLGADVLATGHY 146
           ++LG + +A GH+
Sbjct: 232 KELGCNKIALGHH 244


>gi|330898577|gb|EGH29996.1| argininosuccinate synthase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 267

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|330889568|gb|EGH22229.1| argininosuccinate synthase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|312888753|ref|ZP_07748317.1| GMP synthase, large subunit [Mucilaginibacter paludis DSM 18603]
 gi|311298753|gb|EFQ75858.1| GMP synthase, large subunit [Mucilaginibacter paludis DSM 18603]
          Length = 509

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           L +   D +VV+ +SGGVDSSV A LL    +  IG
Sbjct: 207 LKEKLGDDKVVLGLSGGVDSSVAAVLL----HHAIG 238


>gi|304314860|ref|YP_003850007.1| GMP synthase, subunit B [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588319|gb|ADL58694.1| GMP synthase, subunit B [Methanothermobacter marburgensis str.
           Marburg]
          Length = 308

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 44/196 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D + ++A+SGGVDSSV + L  +     IG      ++  A           +    ++ 
Sbjct: 21  DEKAIIALSGGVDSSVASVLAGKA----IG------DNLTAVFVDHGLLREGEAEYVKKT 70

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----VTR 134
             D +N  +   D  + F              G T     +  R +     +     V  
Sbjct: 71  FSDRLNFRY--IDASDEFLGE---------LEGVT---DPEEKRKIIGRVFIEVFERVAE 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++GA  L  G      +      K    +                     + ++  P+ +
Sbjct: 117 EIGARYLVQGTIAPDWIESEGKIKSHHNVA---------------LPHGLVLEIVEPIRE 161

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++  E+GL 
Sbjct: 162 LYKDEVREIGLELGLP 177


>gi|294785222|ref|ZP_06750510.1| NAD+ synthetase [Fusobacterium sp. 3_1_27]
 gi|294486936|gb|EFG34298.1| NAD+ synthetase [Fusobacterium sp. 3_1_27]
          Length = 258

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLKINAKTIE---------ITNMIDAYFKNEKDASSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|256845472|ref|ZP_05550930.1| NAD+ synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719031|gb|EEU32586.1| NAD+ synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 258

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLKINAKTIE---------ITNMIDAYFKNEKDASSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|225851469|ref|YP_002731703.1| argininosuccinate synthase [Persephonella marina EX-H1]
 gi|225645666|gb|ACO03852.1| argininosuccinate synthase [Persephonella marina EX-H1]
          Length = 399

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 42/204 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+A SGG+D+SV+   L   G++VI            +   G      ++ +  + 
Sbjct: 2   KKRVVLAYSGGLDTSVIVRWLTDKGFEVI----------TYTADVGQGEELDEIEEKAKA 51

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   + D +E F     +P   S A  E     +   +R +    L+ +  +  A
Sbjct: 52  SGA--VEAIIDDIKEEFAREYCMPLMRSGALYEGRYTLLSALSRPLISKKLVELAHRYDA 109

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFPLGDM 195
             +A G                           DQ  F   ++A        +  P+ D 
Sbjct: 110 HYVAHG---------------------STGKGNDQVRFESSVWALDPDIE--VLAPVRDW 146

Query: 196 K---KESVRDLAREMGLDIADKSD 216
           +   +E   + A + G+ +    +
Sbjct: 147 EFKSREEEIEYALKHGIPVKATKE 170


>gi|55958409|emb|CAI16159.1| argininosuccinate synthetase 1 [Homo sapiens]
          Length = 179

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|149064654|gb|EDM14805.1| guanine monphosphate synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 529

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 429


>gi|74144707|dbj|BAE27334.1| unnamed protein product [Mus musculus]
          Length = 693

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 429


>gi|51873878|gb|AAH80685.1| Gmps protein [Mus musculus]
          Length = 477

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 22  KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 70

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 71  LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 125

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 126 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 180

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 181 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 213


>gi|85861218|ref|NP_001028472.2| GMP synthase [glutamine-hydrolyzing] [Mus musculus]
 gi|145558920|sp|Q3THK7|GUAA_MOUSE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|74139380|dbj|BAE40832.1| unnamed protein product [Mus musculus]
 gi|74146610|dbj|BAE41314.1| unnamed protein product [Mus musculus]
 gi|74226222|dbj|BAE25299.1| unnamed protein product [Mus musculus]
 gi|148703454|gb|EDL35401.1| mCG6377, isoform CRA_a [Mus musculus]
 gi|187952891|gb|AAI38412.1| Guanine monphosphate synthetase [Mus musculus]
 gi|187953909|gb|AAI38413.1| Guanine monphosphate synthetase [Mus musculus]
          Length = 693

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 429


>gi|67078508|ref|NP_001019925.1| GMP synthase [glutamine-hydrolyzing] [Rattus norvegicus]
 gi|81908630|sp|Q4V7C6|GUAA_RAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|66910916|gb|AAH98016.1| Guanine monphosphate synthetase [Rattus norvegicus]
          Length = 693

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 429


>gi|76363504|sp|Q9UX31|ASSY_SULSO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 391

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 56/234 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+A SGG+D++V    LK         T +       ++            D +++ 
Sbjct: 1   MKIVLAYSGGLDTTVSIRWLKE--------TFK-------AEIITVTVDVGQKDDFKKIE 45

Query: 81  DTINV----SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           +   +     HY  D   +F N  I          E   P      R +    ++ V ++
Sbjct: 46  ERAYIAGASKHYTIDAVRQFANNYIAYAIKLNGLYEGVYPLSTALARPLIAEKVVEVAKK 105

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP--L 192
            GA+ +A G                           DQ  F  A         +  P  +
Sbjct: 106 EGAEAVAHG---------------------STSKGNDQVRFDLAVKALYPDVKIIAPARI 144

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
            +M +E     A+E G+ I           V+  KY   +     G ++EGDI+
Sbjct: 145 WNMTREDEIKYAKEKGIPIK----------VESDKYS--IDENLWGRSIEGDII 186


>gi|74193453|dbj|BAE20667.1| unnamed protein product [Mus musculus]
          Length = 682

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 227 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 275

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 276 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 330

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 331 DTFVKIANE-----VIGEMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 385

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 386 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 418


>gi|28871297|ref|NP_793916.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970868|ref|ZP_03398991.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato T1]
 gi|301384497|ref|ZP_07232915.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato Max13]
 gi|302059912|ref|ZP_07251453.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato K40]
 gi|302130511|ref|ZP_07256501.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|31562913|sp|Q87XM3|ASSY_PSESM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|28854547|gb|AAO57611.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924391|gb|EEB57963.1| argininosuccinate synthase [Pseudomonas syringae pv. tomato T1]
 gi|330877333|gb|EGH11482.1| argininosuccinate synthase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331015673|gb|EGH95729.1| argininosuccinate synthase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 405

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|237737754|ref|ZP_04568235.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium mortiferum ATCC
           9817]
 gi|229419634|gb|EEO34681.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium mortiferum ATCC
           9817]
          Length = 273

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 48/205 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DS++VA L  +  G + V+G+ +                + + V  A+ 
Sbjct: 29  KKVVLGLSGGIDSALVAFLAAKAFGPENVLGIMM-----------PYKTSSKESVEHAKL 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V +   +   + +         I P   +Y A     P +   R         + R+  +
Sbjct: 78  VIEKTGIRSKLVE---------ITPMVDAYFA---MNPDMSSLRKGN-----KMARERMS 120

Query: 139 DVLATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             +   H    + L +G   K   ++          S                 +GD+ K
Sbjct: 121 --ILFDHSAAENALVLGTSNKTELLLGYGTQFGDSAS-------------AINAIGDLYK 165

Query: 198 ESVRDLAREMGLDIA--DKSDSQDI 220
             V DL+R MG+     DK  S D+
Sbjct: 166 THVWDLSRHMGVPNELIDKKPSADL 190


>gi|220913321|ref|YP_002488630.1| GMP synthase [Arthrobacter chlorophenolicus A6]
 gi|219860199|gb|ACL40541.1| GMP synthase, large subunit [Arthrobacter chlorophenolicus A6]
          Length = 529

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V     +     + +              
Sbjct: 224 DARVICGLSGGVDSAVAAALVQRAVGDQLTCVF---VDHGLLREGEAEQVERDF------ 274

Query: 79  VCDTINVSHYVFDYEERF 96
           V  T  V  Y+ + +ERF
Sbjct: 275 VAAT-GVKLYIANEQERF 291


>gi|149738218|ref|XP_001499390.1| PREDICTED: similar to Argininosuccinate synthase
           (Citrulline--aspartate ligase) [Equus caballus]
          Length = 412

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTR 134
                ++ D    F    I P           Y  G +   PC+   +       + + +
Sbjct: 60  -----FIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQ 107

Query: 135 QLGADVLATG 144
           + GA  ++ G
Sbjct: 108 REGAKYVSHG 117


>gi|86143063|ref|ZP_01061485.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85830508|gb|EAQ48967.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 515

 Score = 50.2 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 32/195 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDSSV A LL +  G ++  + +                   +  D  +  
Sbjct: 220 KVILGLSGGVDSSVAAMLLHKAIGKNLHCIFVNN-----------GLLRKNEFEDVLKQY 268

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLG 137
           + + ++    D   RF +A+             G   +   D         ++   + L 
Sbjct: 269 EGMGLNVKGVDASARFLDALAGKSDPEEKRKTIGRVFIEVFDDEAH-----MVEDAKWLA 323

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              +            G     +                +          +  PL  + K
Sbjct: 324 QGTIYPDVIESVSATGGPSATIKSHHN------------VGGLPDFMKLKVVEPLRMLFK 371

Query: 198 ESVRDLAREMGLDIA 212
           + VR +   M +  A
Sbjct: 372 DEVRRVGASMDMSPA 386


>gi|313793359|gb|EFS41417.1| GMP synthase protein [Propionibacterium acnes HL110PA1]
 gi|313800999|gb|EFS42267.1| GMP synthase protein [Propionibacterium acnes HL110PA2]
 gi|313838049|gb|EFS75763.1| GMP synthase protein [Propionibacterium acnes HL086PA1]
 gi|314963442|gb|EFT07542.1| GMP synthase protein [Propionibacterium acnes HL082PA1]
 gi|315077290|gb|EFT49352.1| GMP synthase protein [Propionibacterium acnes HL053PA2]
 gi|327451714|gb|EGE98368.1| GMP synthase protein [Propionibacterium acnes HL092PA1]
          Length = 517

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+  R +  E+GL 
Sbjct: 368 RTLFKDEARAVGLELGLP 385


>gi|313201039|ref|YP_004039697.1| gmp synthase large subunit [Methylovorus sp. MP688]
 gi|312440355|gb|ADQ84461.1| GMP synthase, large subunit [Methylovorus sp. MP688]
          Length = 535

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V++ +SGGVDSSV AAL+ R  G  +  V     +       +G                
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVF---VDHGLLRLNEGKMVMEMF-------AG 275

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
            ++      D   +F      V  P A     G   +          F    +  +    
Sbjct: 276 QLHARVIHVDATAQFMGQLAGVSDPEAKRKIIGREFVEV--------FKAEAAKLKAGTG 327

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL 192
              GA  LA G      +  G    ++ +  +           +     +QL   L  PL
Sbjct: 328 GHKGASFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQLGLKLLEPL 379

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR L   +GL 
Sbjct: 380 RDLFKDEVRQLGVALGLP 397


>gi|312214114|emb|CBX94116.1| similar to GMP synthase [Leptosphaeria maculans]
          Length = 541

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 29/196 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG             R       +   D     + 
Sbjct: 236 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAVMVDNGVLRLNEAVQVKKTLD-----EG 286

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++  V D  + F +           AG T  P  +  R V  +  + V ++    + A
Sbjct: 287 LGINLTVIDASDLFLDR---------LAGITDNP--EQKRKVIGNTFIEVFQEQAKKIAA 335

Query: 143 TGHYIRSRLYVG--------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                     +          D         P    +   + +          L  PL +
Sbjct: 336 AAASSSKAGEIEWLLQGTLYPDVIESLSFKGPSQTIKTH-HNVGGLPANMNLKLIEPLRE 394

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR+L  E+G+ 
Sbjct: 395 LFKDEVRELGVELGIP 410


>gi|238926975|ref|ZP_04658735.1| argininosuccinate synthase [Selenomonas flueggei ATCC 43531]
 gi|238885209|gb|EEQ48847.1| argininosuccinate synthase [Selenomonas flueggei ATCC 43531]
          Length = 403

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK    G +VI           A    G       V+D + 
Sbjct: 6   KKVVLAYSGGLDTSVIIPWLKEHYDGCEVIA----------ACADVGQGDELSVVHD-KA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +    +   ++ D  + F    + P           Y  G +        R V    L+ 
Sbjct: 55  LASGAS-KVFIVDLTKEFLEEYVWPTLKAGAVYEGKYLLGTSFA------RPVIAKALVD 107

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +A G
Sbjct: 108 IAKREGADAIAHG 120


>gi|148238786|ref|YP_001224173.1| PP family ATPase [Synechococcus sp. WH 7803]
 gi|147847325|emb|CAK22876.1| ATP-utilizing enzyme of the PP-loop superfamily [Synechococcus sp.
           WH 7803]
          Length = 283

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 41/194 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV VA SGGVDS++VAA+              L +   A        A   + +AR    
Sbjct: 32  RVCVAYSGGVDSTLVAAIACEQ----------LDDHAFAVTGVSPSLAPHLLEEARLQAR 81

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + + H   +  E             Y++  T   C  C R +    L  + R       
Sbjct: 82  WLAIRHLEVETREL--------DDPDYSSNPTD-RCFACKREL-HHHLKDIARA------ 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A G  +   + + D G  R  +         Q+       + Q+           K ++R
Sbjct: 126 ADGALVVDGVNLDDLGDHRPGIEAAR-----QAGVRSPLAELQID----------KATIR 170

Query: 202 DLAREMGLDIADKS 215
            L++ +G    DK 
Sbjct: 171 RLSKALGFPWWDKP 184


>gi|114567299|ref|YP_754453.1| GMP synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317748|sp|Q0AW22|GUAA_SYNWW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114338234|gb|ABI69082.1| GMP synthase (glutamine-hydrolyzing) [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 510

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV+ A+SGGVDSSV A L+ +  G  ++ V            RKG      D +    
Sbjct: 215 KKRVLCALSGGVDSSVAATLVHQAVGEQLVCVF-----VDNGLLRKGEASQVIDTF---- 265

Query: 79  VCDTINVSHYVFDYEERF 96
               + ++    D  ERF
Sbjct: 266 -AKEMKMNLVFVDARERF 282


>gi|312792431|ref|YP_004025354.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179571|gb|ADQ39741.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 303

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+ +V+V +SGG DS +    +L  +GY+V G+ +      + S +              
Sbjct: 46  KEDKVLVVISGGKDS-MALWHILASEGYNVTGMYI-NLGIGQYSDKSQQV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D ++ +   +     S      T   C  C   +K      V    G
Sbjct: 96  SFAQKNGLELIVKDIKKEYGLDI--YKLSKLLKRST---CSVCGS-IKRYLFNKVAYDGG 149

Query: 138 ADVLATGHYI 147
              +ATGH +
Sbjct: 150 FSAVATGHNL 159


>gi|188994499|ref|YP_001928751.1| GMP synthase [Porphyromonas gingivalis ATCC 33277]
 gi|226739658|sp|B2RIF9|GUAA_PORG3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188594179|dbj|BAG33154.1| glutamine-hydrolyzing GMP synthase [Porphyromonas gingivalis ATCC
           33277]
          Length = 506

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSVVA LL +  G ++  +            RKG     +
Sbjct: 205 ELRERLGDDKVILALSGGVDSSVVAVLLNKAIGRNLTCIF-----VDHGLLRKGE--FER 257

Query: 72  DVYDARRVCDTINVSHYVFDYEERF 96
            + D     + + ++    + +E+F
Sbjct: 258 VLQDY----EHLGLNVIGVNAKEKF 278


>gi|119361314|sp|Q2RMV0|ASSY_RHORT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 404

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + YD   VT                  G+++  AR+  
Sbjct: 7   KKVVLAYSGGLDTSIILRWLQDE-YDCEVVTF-----------TADIGQGEELEPARQKA 54

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLGA 138
           + + +   Y+ D  E F    + P   +    E                 L+ +    GA
Sbjct: 55  EMMGIKEIYIEDLREEFVRDYVFPMFRANTLYEGVYLLGTSIARPLIGKRLVEIAEATGA 114

Query: 139 DVLATG 144
           D ++ G
Sbjct: 115 DAVSHG 120


>gi|74212049|dbj|BAE40189.1| unnamed protein product [Mus musculus]
          Length = 693

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 49/215 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 238 KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 286

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKF 126
            +    + +   V +    F N              TP   +             R +  
Sbjct: 287 LK---KLGIQVKVINAAHSFYNG--TTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 341

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-----------DQSY 175
              + +  +     +     ++        G  R  +     L             + + 
Sbjct: 342 DTFVKIANE-----VIGEMGLKHEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTE 396

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    ++    +  PL D  K+ VR L RE+ L 
Sbjct: 397 LIRKLREE--GKVIEPLKDFHKDEVRILGRELDLP 429


>gi|329766926|ref|ZP_08258454.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           haemolysans M341]
 gi|328837651|gb|EGF87276.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           haemolysans M341]
          Length = 416

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RVC 80
           + ++ +SGG+DS V A  L+  G +V  +  Q       S    S  A Q ++D   ++ 
Sbjct: 180 KALLLLSGGIDSPVAAHTLQVKGVEVEMIHFQ-------SPPFTSAEALQKIFDLTIKLS 232

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + +  +  +V ++ +  +  ++    S+Y    T        R         V ++ G  
Sbjct: 233 EVVGKIKLHVVNFTKL-QTEIVKRVPSNYTMTST--------RRFMLRIAEEVAKKEGCL 283

Query: 140 VLATGHYI 147
            +ATG  +
Sbjct: 284 AIATGESL 291


>gi|314964923|gb|EFT09022.1| GMP synthase protein [Propionibacterium acnes HL082PA2]
          Length = 517

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DRRVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLRQGEAEQVK--ND--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T      V D  +RF +A          AG T     +  R +           V +
Sbjct: 268 VAAT-GADLVVADESQRFLDA---------LAGVT---DPETKRKIIGREFIRTFEDVAK 314

Query: 135 QLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +L AD       ++  LY    + G             +            Q   L  PL
Sbjct: 315 RLNADQ-PIDFLVQGTLYPDVVESGGGE-----GAANIKSHHNVGGLPDDLQFS-LVEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+  R +  E+GL 
Sbjct: 368 RTLFKDEARAVGLELGLP 385


>gi|301318292|gb|ADK67061.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVRVIRVNAADRY 102


>gi|260579165|ref|ZP_05847056.1| GMP synthase [Corynebacterium jeikeium ATCC 43734]
 gi|258602711|gb|EEW15997.1| GMP synthase [Corynebacterium jeikeium ATCC 43734]
          Length = 513

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R + A+SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 209 EGRAICALSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 259

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F   +                 +          L         
Sbjct: 260 VAAT-GAKLVTVDEREAFLQKLAGVTEPEAKRKAIGAGFIRSFERAVAGVLADAPEGSSV 318

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 319 DFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPDDVEFKLVEPLRLLFKD 369

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 370 EVRAVGRELGLP 381


>gi|148643231|ref|YP_001273744.1| ammonia-dependent NAD+ synthetase, NadE [Methanobrevibacter smithii
           ATCC 35061]
 gi|148552248|gb|ABQ87376.1| ammonia-dependent NAD+ synthetase, NadE [Methanobrevibacter smithii
           ATCC 35061]
          Length = 266

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 47/192 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A L     G + V G+ +             +    +D      +  
Sbjct: 33  VVGLSGGIDSTLTAYLATEAVGKENVFGIVM-----------PSTTTPTEDKIHGTDIAK 81

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTRQLGA 138
            +++     DY+E   ++V+  F       +T    +        ++ S +       G 
Sbjct: 82  ILDI-----DYKEMAIDSVLNEFLY-ITQYKTENEQLAIGNLKARIRMSIIYYYANSKG- 134

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L +G   +S + +G   K         D+E                    P+GD+ K 
Sbjct: 135 -YLVSGTGNKSEILIGYFTKHGDG---ACDIE--------------------PIGDLYKT 170

Query: 199 SVRDLAREMGLD 210
            V +LA+ MG+ 
Sbjct: 171 DVFELAKYMGVP 182


>gi|119944857|ref|YP_942537.1| exsB protein [Psychromonas ingrahamii 37]
 gi|189038943|sp|A1STX3|QUEC_PSYIN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|119863461|gb|ABM02938.1| exsB protein [Psychromonas ingrahamii 37]
          Length = 221

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 19/143 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVV  SGG+DS  V     + G     +T                   +++  AR VC
Sbjct: 3   KKVVVIYSGGMDSFTVLHKAMQQGLTPYALTFDY-----------GQRHIKEIEVAREVC 51

Query: 81  DTINVSHYVFDYEER--------FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + V H V D              ++ I      Y         V     +  S  +  
Sbjct: 52  EELGVHHKVIDISAINQLIGGSSLTDSSIDVAQGHYQQESMKSTVVPNRNMILLSLAIGY 111

Query: 133 TRQLGADVLATGHYIRSRLYVGD 155
              LGA+ +  G +        D
Sbjct: 112 AVSLGAEQVYYGAHSGDHEIYPD 134


>gi|34540397|ref|NP_904876.1| GMP synthase [Porphyromonas gingivalis W83]
 gi|44887930|sp|Q7MWL9|GUAA_PORGI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34396710|gb|AAQ65775.1| GMP synthase [Porphyromonas gingivalis W83]
          Length = 506

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSVVA LL +  G ++  +            RKG     +
Sbjct: 205 ELRERLGDDKVILALSGGVDSSVVAVLLNKAIGRNLTCIF-----VDHGLLRKGE--FER 257

Query: 72  DVYDARRVCDTINVSHYVFDYEERF 96
            + D     + + ++    + +E+F
Sbjct: 258 VLQDY----EHLGLNVIGVNAKEKF 278


>gi|307706804|ref|ZP_07643609.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis SK321]
 gi|307617889|gb|EFN97051.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis SK321]
          Length = 513

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 200 TMDNFIDMQIQKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHG 254

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG      ++     +     ++    D  +RF + +                 V  
Sbjct: 255 LLRKGEADQVMEM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV 309

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 310 -----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 352

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 353 PEDMQFELIEPLNTLYKDEVRALGTELGMP 382


>gi|298504665|gb|ADI83388.1| adenosine nucleotide alpha-hydrolase superfamily protein [Geobacter
           sulfurreducens KN400]
          Length = 269

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 72/217 (33%), Gaps = 52/217 (23%)

Query: 5   EATRLNSLDLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           E T L    L    ++M  V+VA SGGVDS+    LL+   +D++G      +   A   
Sbjct: 2   EQTHLKYEQLKAILREMGSVLVAFSGGVDST---FLLRVA-HDLLG------DKAVAFTA 51

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDC 120
                   +  +A  +  ++                V+V        G    P   C  C
Sbjct: 52  TSPTYPESEFREAVGLARSMG------------ARQVVVESNELEIPGFAFNPRNRCYHC 99

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            + + F        +LG   +A G          D    R       +L           
Sbjct: 100 KKEL-FGLCGRTAAELGLAWVADG------SNCDDLDDYRPGRAAAGELG---------- 142

Query: 181 TQQQLCDLRFPL--GDMKKESVRDLAREMGLDIADKS 215
                  +R PL    + K  +R+L+RE+GL   DK 
Sbjct: 143 -------VRSPLVEAGLTKADIRELSRELGLPTWDKQ 172


>gi|261881270|ref|ZP_06007697.1| GMP synthase [Prevotella bergensis DSM 17361]
 gi|270331979|gb|EFA42765.1| GMP synthase [Prevotella bergensis DSM 17361]
          Length = 514

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           +L K   + RV++ +SGGVDSSV A LL R  G ++  + 
Sbjct: 206 ELKKQLGNDRVILGLSGGVDSSVCAVLLNRAIGKNLTCIF 245


>gi|221119588|ref|XP_002163988.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 553

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 18/97 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR----KGSCCAGQDVY 74
            + R+   +SGG+DSS+VAAL       V+    +L+     S              D+ 
Sbjct: 242 SERRIGCLLSGGLDSSLVAAL-------VV----KLFREEGLSYPLQTFSIGLPNSPDLI 290

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIV---PFASSY 108
            AR+V   +   H+   +       VI        SY
Sbjct: 291 AARKVATMLGTEHHEVLFTPEEAFHVIEKVNYTLESY 327


>gi|312134203|ref|YP_004001541.1| phosphoadenosine phosphosulfate reductase [Caldicellulosiruptor
           owensensis OL]
 gi|311774254|gb|ADQ03741.1| phosphoadenosine phosphosulfate reductase [Caldicellulosiruptor
           owensensis OL]
          Length = 303

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +++V +SGG DS +    +L ++GY+V G+ +      + S +              
Sbjct: 46  KKDKILVVISGGKDS-MALWHILAKEGYNVTGMYI-NLGIGQYSDKSQQV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D ++ +   +     S      T   C  C   +K      +    G
Sbjct: 96  SFAQKNGLELIVKDIKKEYGLDI--YKLSKLLKRST---CSVCGS-IKRYLFNKIAYDGG 149

Query: 138 ADVLATGHYI 147
              +ATGH +
Sbjct: 150 FSAVATGHNL 159


>gi|262306069|gb|ACY45627.1| gln amidotransferase [Leiobunum verrucosum]
          Length = 196

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AALL +   +  VI + +     RK    +             
Sbjct: 43  DNKVLMLVSGGVDSTVCAALLHKALKEDQVIALHIDNGFMRKNESLQVEQSL-------- 94

Query: 78  RVCDTINVSHYVFDYEERFRN 98
                I +   V +   +F N
Sbjct: 95  ---KRIGLKLKVVNASHQFYN 112


>gi|255321990|ref|ZP_05363140.1| PP-loop family protein [Campylobacter showae RM3277]
 gi|255301094|gb|EET80361.1| PP-loop family protein [Campylobacter showae RM3277]
          Length = 255

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           ++++ +SGG DS  +A +LK          +Q     K   +    S   G+D     R 
Sbjct: 27  KILLGLSGGKDSLALAHVLK---------HMQNVTPEKFEFKAVTLSYGMGEDYAYLTRH 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H V D        +            +   C   +R ++   L +   + G +
Sbjct: 78  CAEHGIEHDVIDSS------IFEISKDKIRKNSSF--CSFFSR-MRRGYLYTYALEHGFN 128

Query: 140 VLATGHYI 147
            LA  H++
Sbjct: 129 KLAIAHHL 136


>gi|223038750|ref|ZP_03609043.1| PP-loop family protein [Campylobacter rectus RM3267]
 gi|222880152|gb|EEF15240.1| PP-loop family protein [Campylobacter rectus RM3267]
          Length = 255

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           ++++ +SGG DS  +A +LK          +Q     K   +    S   G+D     R 
Sbjct: 27  KILLGLSGGKDSLALAHVLK---------HMQNVTPEKFEFKAVTLSYGMGEDYAYLTRH 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H V D        +            +   C   +R ++   L +   + G +
Sbjct: 78  CAEHGIEHDVIDSS------IFEISKDKIRKNSSF--CSFFSR-MRRGYLYTYALEHGFN 128

Query: 140 VLATGHYI 147
            LA  H++
Sbjct: 129 KLAIAHHL 136


>gi|220930618|ref|YP_002507527.1| hypothetical protein Ccel_3258 [Clostridium cellulolyticum H10]
 gi|220000946|gb|ACL77547.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
          Length = 355

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 84/245 (34%), Gaps = 45/245 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V +SGG DS  VA +L +  Y  +++G+T+      +++                 +  
Sbjct: 69  LVMLSGGKDSIYVAYILSKV-YKLNIVGLTIDNGFEYQSTFDNSY-----------DIAK 116

Query: 82  TINVSHYVFDYEERFRNAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +SH+++               +       +    C  C R +K +  + V + L   
Sbjct: 117 KLGISHFIYRLPFEDMREYYNFLLTEDTLKLQDCSQLCFFCGRLLK-TISIKVAKMLNVT 175

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + +GH +     +GD+              +D+S   F   ++ + +  + + + KK  
Sbjct: 176 AVFSGHTLEQIRALGDEE------------GKDKS---FDIRRRYIQN--YSVQNYKKA- 217

Query: 200 VRDLAREMGLDIADKSDSQDICF---VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256
                  + L      +S    F   ++   +   +  +        +IV L  + LG  
Sbjct: 218 -------LDLLKEKSKESISYLFDDNLETLNFDRFIYPLQYFEYKPIEIVELLSKELGWV 270

Query: 257 NGIIN 261
                
Sbjct: 271 ADTHF 275


>gi|19704537|ref|NP_604099.1| NAD synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328416|ref|ZP_06870942.1| NAD(+) synthase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|25090755|sp|Q8REA7|NADE_FUSNN RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|19714821|gb|AAL95398.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154490|gb|EFG95282.1| NAD(+) synthase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 258

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLKINSKTIE---------ITDMIDAYFKNEKEATSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDAACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|313898301|ref|ZP_07831838.1| NAD+ synthase [Clostridium sp. HGF2]
 gi|312956683|gb|EFR38314.1| NAD+ synthase [Clostridium sp. HGF2]
          Length = 549

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V MSGG+DSSV AALL    G        ++Y    A++   +      + +A      
Sbjct: 251 IVGMSGGLDSSVTAALLVAALGPK------RVYGYNIATRHNSTTT----ISNAAAEAKA 300

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           + +++   + E   + +V   F   Y      +P
Sbjct: 301 LGIAYQEGNMETLVQASV-ELFHKEYGYAVEAMP 333


>gi|309775465|ref|ZP_07670467.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916761|gb|EFP62499.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 317

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 22  RVVVAMSGGVDSSV---VAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS V      +        ++V+G+ ++L                 D   
Sbjct: 25  RIAVGVSGGKDSMVLLTALHMYSKFADRNFEVVGIHIKL------------GFPNMDFSK 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C    ++ + FD  + +      P       G     C  C++  K + ++   ++
Sbjct: 73  VEAFCKEQGITFHQFD-SKVYEILKRNPD----KEGRIK--CSLCSKFKK-ATVIDAAKK 124

Query: 136 LGADVLATGHYI 147
           L    +A GH+ 
Sbjct: 125 LSCTKVAFGHHS 136


>gi|284998645|ref|YP_003420413.1| GMP synthase (glutamine-hydrolyzing) [Sulfolobus islandicus
           L.D.8.5]
 gi|284446541|gb|ADB88043.1| GMP synthase (glutamine-hydrolyzing) [Sulfolobus islandicus
           L.D.8.5]
          Length = 367

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 48/216 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
            L +   + RV+ A+SGGVDS+  A L   L   G  VI V +     RK    K     
Sbjct: 14  QLKQKVGNERVLAAVSGGVDSTTAAVLAYNLL--GNKVIPVLIDTGFLRKNEAEKIKAYL 71

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              + +             V D  E F + +         A           +  KF +L
Sbjct: 72  SNVLPN-----------LIVVDERETFTSEIEG--MEEAEA-----------KRKKFREL 107

Query: 130 L-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQ 182
                 S+ R+  A  L  G      +      K +  +     +D E++  +       
Sbjct: 108 FYSSISSLMRKFNAKYLMQGTIAADWVETQGGIKTQHNVLVQIGIDTEKEWGFT------ 161

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
                L  PL D+ K  VR+LAR + L   + S+ Q
Sbjct: 162 -----LIEPLADLYKNEVRELARYLKLP-KEISERQ 191


>gi|227831147|ref|YP_002832927.1| GMP synthase domain protein [Sulfolobus islandicus L.S.2.15]
 gi|259647669|sp|C3MJX9|GUAAB_SULIL RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|227457595|gb|ACP36282.1| GMP synthase domain protein [Sulfolobus islandicus L.S.2.15]
          Length = 367

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 48/216 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
            L +   + RV+ A+SGGVDS+  A L   L   G  VI V +     RK    K     
Sbjct: 14  QLKQKVGNERVLAAVSGGVDSTTAAVLAYNLL--GNKVIPVLIDTGFLRKNEAEKIKAYL 71

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              + +             V D  E F + +         A           +  KF +L
Sbjct: 72  SNVLPN-----------LIVVDERETFTSEIEG--MEEAEA-----------KRKKFREL 107

Query: 130 L-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQ 182
                 S+ R+  A  L  G      +      K +  +     +D E++  +       
Sbjct: 108 FYSSISSLMRKFNAKYLMQGTIAADWVETQGGIKTQHNVLVQIGIDTEKEWGFT------ 161

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
                L  PL D+ K  VR+LAR + L   + S+ Q
Sbjct: 162 -----LIEPLADLYKNEVRELARYLKLP-KEISERQ 191


>gi|212536961|ref|XP_002148636.1| argininosuccinate synthase [Penicillium marneffei ATCC 18224]
 gi|210068378|gb|EEA22469.1| argininosuccinate synthase [Penicillium marneffei ATCC 18224]
          Length = 416

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V +A SGG+D+SV+   L   GYDV+   +                  +D   A + 
Sbjct: 3   KPKVCLAYSGGLDTSVILKWLIEQGYDVVA-FMA------------DVGQAEDFAAAEKK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVI-------VPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
              I  V   V D ++ F   +          F   Y  G +    V     ++      
Sbjct: 50  ALAIGAVKFVVEDLKQEFVEELCFRAIQCNAIFEDQYLLGTSLARPVIARAQMR------ 103

Query: 132 VTRQLGADVLATG 144
           V +Q     ++ G
Sbjct: 104 VAQQNDCVAVSHG 116


>gi|227828391|ref|YP_002830171.1| GMP synthase domain protein [Sulfolobus islandicus M.14.25]
 gi|229580032|ref|YP_002838432.1| GMP synthase domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581307|ref|YP_002839706.1| GMP synthase domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|229585620|ref|YP_002844122.1| GMP synthase domain protein [Sulfolobus islandicus M.16.27]
 gi|238620583|ref|YP_002915409.1| GMP synthase domain protein [Sulfolobus islandicus M.16.4]
 gi|259647667|sp|C3N0R9|GUAAB_SULIA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647668|sp|C4KJU6|GUAAB_SULIK RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647670|sp|C3MRT0|GUAAB_SULIM RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647671|sp|C3NMG4|GUAAB_SULIN RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647672|sp|C3N905|GUAAB_SULIY RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|227460187|gb|ACP38873.1| GMP synthase domain protein [Sulfolobus islandicus M.14.25]
 gi|228010748|gb|ACP46510.1| GMP synthase domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012023|gb|ACP47784.1| GMP synthase domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228020670|gb|ACP56077.1| GMP synthase domain protein [Sulfolobus islandicus M.16.27]
 gi|238381653|gb|ACR42741.1| GMP synthase domain protein [Sulfolobus islandicus M.16.4]
 gi|323475464|gb|ADX86070.1| GMP synthase domain protein [Sulfolobus islandicus REY15A]
 gi|323478186|gb|ADX83424.1| GMP synthase domain protein [Sulfolobus islandicus HVE10/4]
          Length = 367

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 48/216 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
            L +   + RV+ A+SGGVDS+  A L   L   G  VI V +     RK    K     
Sbjct: 14  QLKQKVGNERVLAAVSGGVDSTTAAVLAYNLL--GNKVIPVLIDTGFLRKNEAEKIKAYL 71

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              + +             V D  E F + +         A           +  KF +L
Sbjct: 72  SNVLPN-----------LIVVDERETFTSEIEG--MEEAEA-----------KRKKFREL 107

Query: 130 L-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQ 182
                 S+ R+  A  L  G      +      K +  +     +D E++  +       
Sbjct: 108 FYSSISSLMRKFNAKYLMQGTIAADWVETQGGIKTQHNVLVQIGIDTEKEWGFT------ 161

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
                L  PL D+ K  VR+LAR + L   + S+ Q
Sbjct: 162 -----LIEPLADLYKNEVRELARYLKLP-KEISERQ 191


>gi|14521338|ref|NP_126814.1| asparagine synthetase, putative [Pyrococcus abyssi GE5]
 gi|5458556|emb|CAB50044.1| Asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4)
           [Pyrococcus abyssi GE5]
          Length = 479

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 33/170 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V V  SGGVDSS++A +  R  Y DVI     LY S     +        DV  ARRV
Sbjct: 238 KKVGVLFSGGVDSSLIALIASR--YSDVI-----LYTSGTEDSK--------DVEWARRV 282

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLG 137
            + + +      +        I     +      P P    N  +           R+ G
Sbjct: 283 AEELGLKLRESLFSREDIENEIERIMFAIEE---PNP---MNLAIAIPLYFSTKRAREDG 336

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
             VL +G            G   + +  P  + +D    +    ++ L  
Sbjct: 337 VKVLLSGQGADELF-----GGYAKYLQNPGLMLKD----VEELGERNLAR 377


>gi|304436517|ref|ZP_07396491.1| argininosuccinate synthase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370563|gb|EFM24214.1| argininosuccinate synthase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 403

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK    G +VI           A    G       V+D + 
Sbjct: 6   KKVVLAYSGGLDTSVIIPWLKEHYDGCEVIA----------ACADVGQGDELSVVHD-KA 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +    +   ++ D  + F    + P           Y  G +        R V    L+ 
Sbjct: 55  LASGAS-KVFIVDLTKEFLEEYVWPTLKAGAVYEGKYLLGTSFA------RPVIAKALVD 107

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +A G
Sbjct: 108 IAKREGADAIAHG 120


>gi|262306107|gb|ACY45646.1| gln amidotransferase [Scolopendra polymorpha]
          Length = 197

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL++   +  VI V +     RK    +               
Sbjct: 45  KVLMLVSGGVDSTVCAALLRKALPEEQVIAVHIDNGFMRKNESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
            + I +   V +    F N
Sbjct: 95  -NKIGLKLKVVNVSHTFYN 112


>gi|296108939|ref|YP_003615888.1| PP-loop domain protein [Methanocaldococcus infernus ME]
 gi|295433753|gb|ADG12924.1| PP-loop domain protein [Methanocaldococcus infernus ME]
          Length = 290

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 23/129 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD +++V +SGG DS   A +LK+ GYD+    + L           S  +   +   + 
Sbjct: 47  KDEKILVPISGGKDSHAAAYILKKLGYDIELFHINL---------GISNFSEISLEKVKE 97

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQL 136
           + + IN   ++ + +E     +          G+    C    R +  KF        + 
Sbjct: 98  LSNFINAKLHIVNLKE-----ITGKTIEDVK-GKKCSICGITKRYLMNKFGY------EH 145

Query: 137 GADVLATGH 145
           G D + TGH
Sbjct: 146 GFDTIVTGH 154


>gi|189425287|ref|YP_001952464.1| NAD synthetase [Geobacter lovleyi SZ]
 gi|238692115|sp|B3E4K8|NADE_GEOLS RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|189421546|gb|ACD95944.1| NAD+ synthetase [Geobacter lovleyi SZ]
          Length = 273

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 46/204 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V+ +SGG+DS++V  L     G + V  + +                  +    AR 
Sbjct: 29  KKAVLGLSGGIDSALVCHLAAEALGPENVHAICM-----------PYRTSNPESEAHARL 77

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V +   V   V           I P   +Y                 F            
Sbjct: 78  VAEASGVQFSVVG---------ITPMVDAY-----------------FDQFPDANNMRRG 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A     R R+ V  D              + +    + T    +     P+GD+ K 
Sbjct: 112 NKMA-----RERMTVLFDHSALYGGLVLGTSNKTELLLGYGTLYGDMASALNPIGDLYKT 166

Query: 199 SVRDLAREMGL--DIADKSDSQDI 220
            V  L+ E+G+   + +K  S D+
Sbjct: 167 QVWQLSEEVGVPKPVIEKKPSADL 190


>gi|120436453|ref|YP_862139.1| argininosuccinate synthase [Gramella forsetii KT0803]
 gi|117578603|emb|CAL67072.1| argininosuccinate synthase [Gramella forsetii KT0803]
          Length = 395

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S  A  L + + ++V  V          +             +A+++
Sbjct: 2   KKVVIAYSGGLDTSYCAKYLSEEEKFEVHAV-------SVNTGGFSEEEIKNIGENAKKI 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLGA 138
             T   S+   D    F   V+              P       +  +  +++  +++GA
Sbjct: 55  GAT---SYKNIDAVTSFYQKVVKYLIFGNVLKNDTYPLSVSAERIIQAIEIVNYAKKIGA 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 GYIAHG 117


>gi|169611454|ref|XP_001799145.1| hypothetical protein SNOG_08840 [Phaeosphaeria nodorum SN15]
 gi|121920215|sp|Q0UHC4|GUAA_PHANO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|111062888|gb|EAT84008.1| hypothetical protein SNOG_08840 [Phaeosphaeria nodorum SN15]
          Length = 541

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 33/202 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+K      IG                       + +A++
Sbjct: 232 EKGQVIGAVSGGVDSTVAAKLMKEA----IG---------DRFHAVMVDNGVLRLNEAKQ 278

Query: 79  VCDT----INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTV-KFSDL 129
           V +T    + ++  V D  + F +            G T  P     V  N  +  F + 
Sbjct: 279 VKETLEKGLGINLTVIDASDMFLDR---------LKGITDNPEQKRKVIGNTFIEIFQEK 329

Query: 130 LSVTRQLGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                    +    G      +  +  D         P    +   + +          L
Sbjct: 330 AKEIAAAAKNSSNAGEIEWLLQGTLYPDVIESLSFKGPSQTIKTH-HNVGGLPANMNLKL 388

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L  E+G+ 
Sbjct: 389 IEPLRELFKDEVRALGVELGIP 410


>gi|88607947|ref|YP_505762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Anaplasma phagocytophilum HZ]
 gi|88599010|gb|ABD44480.1| GMP synthase [Anaplasma phagocytophilum HZ]
          Length = 529

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 33/192 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV A+SGGVDSSV + LL R     IG  L+         RKG     ++ +      D 
Sbjct: 227 VVAAISGGVDSSVASVLLHRA----IGDQLKCVFVDTGLLRKGEVETVREFF-----VDK 277

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-A 138
           + +S  +      F      V+ P       G T +                  ++LG A
Sbjct: 278 LKMSVSIVSAAFLFIERLRGVVDPEEKRKIIGNTFIEV-----------FEQEAKKLGDA 326

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L  G      +  G  G   +I  +           +    +     L  PL  + K+
Sbjct: 327 QFLMQGTIYPDVIESGASGLGVKI--KSHHN-------VGGLPENMNLSLVEPLRCLFKD 377

Query: 199 SVRDLAREMGLD 210
            VR L  E+GL 
Sbjct: 378 EVRALGSELGLP 389


>gi|34764278|ref|ZP_00145121.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27885949|gb|EAA23282.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 258

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLKINAKTIE---------ITDMIDAYFKNEKDASSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|326803273|ref|YP_004321091.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651304|gb|AEA01487.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 516

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 40/198 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSVV  LL++  G  +  +            RKG          A +
Sbjct: 221 DKKVLLGLSGGVDSSVVGVLLQKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 266

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVK----FSDLLSVT 133
           V +T+           +F   +I   A     G+   +   +  R +      +      
Sbjct: 267 VMETLG---------GKFGLNIIKADAQERFLGKLAGVSDPESKRKIIGHEFVAVFDDEA 317

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            +L G D LA G      +  G +           +  +   + +    +    +L  PL
Sbjct: 318 TKLDGMDFLAQGTLYTDVIESGTET---------AETIKSH-HNVGGLPEDMQFELIEPL 367

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+G+ 
Sbjct: 368 NTLFKDEVRAVGTELGMP 385


>gi|310658627|ref|YP_003936348.1| nh(3)-dependent nad(+) synthetase [Clostridium sticklandii DSM 519]
 gi|308825405|emb|CBH21443.1| NH(3)-dependent NAD(+) synthetase [Clostridium sticklandii]
          Length = 249

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 55/201 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+K+            +               QDV  A  + +  
Sbjct: 28  VVGISGGIDSAVVAYLIKKA-----------FPENSLGVILPIKSNPQDVEHANLLVNKC 76

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR------------TVKFSDLLS 131
            +     +  +                  T       N              ++ S L +
Sbjct: 77  RIESMNINLTKTHE-------LLFNEIKNTMSSDQLWNPTYQKISDANLRARLRMSTLYT 129

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +   LG             + VG D              + + Y  + T          P
Sbjct: 130 IANNLGY------------MVVGTD-------------NKAEVYTGYFTKYGDGGVDLLP 164

Query: 192 LGDMKKESVRDLAREMGLDIA 212
           + ++ K  V + A+ +G+   
Sbjct: 165 IANLLKREVYEWAKVLGVPNE 185


>gi|328852300|gb|EGG01447.1| hypothetical protein MELLADRAFT_45152 [Melampsora larici-populina
           98AG31]
          Length = 436

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V++A SGG+D+S + A L   GY+V+   +                  +D   AR 
Sbjct: 4   SKGKVLLAYSGGLDTSCILAWLIEQGYEVVA-FMA------------DVGQEEDFEAARL 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFAS 106
               I      + D +  F   +I P   
Sbjct: 51  KALKIGATKFVLQDLKREFVTELITPAIQ 79


>gi|297181122|gb|ADI17320.1| argininosuccinate synthase [uncultured actinobacterium
           HF0070_17F14]
 gi|297181213|gb|ADI17408.1| argininosuccinate synthase [uncultured Verrucomicrobiales bacterium
           HF0070_30L02]
          Length = 402

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+VV+A SGG+D+S++   L+     +VI  T                  G++V  AR  
Sbjct: 1   MKVVLAYSGGLDTSIILRWLQETFNAEVITFT-------------ADLGQGEEVEPARAK 47

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
              + V     ++ D  E F    + P           Y  G +    +   R      L
Sbjct: 48  ALEMGVPAENIHIEDVREEFVRDFVYPMFRANTIYEGEYLLGTSIARPLIAKR------L 101

Query: 130 LSVTRQLGADVLATG 144
           + +  + GAD ++ G
Sbjct: 102 VEIAAEHGADAISHG 116


>gi|291280006|ref|YP_003496841.1| argininosuccinate synthase [Deferribacter desulfuricans SSM1]
 gi|290754708|dbj|BAI81085.1| argininosuccinate synthase [Deferribacter desulfuricans SSM1]
          Length = 403

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   GYDV+      Y +    +        +      +   
Sbjct: 5   KVVLAYSGGLDTSVILKWLDLQGYDVVA-----YVADLGQRDDLEALEEKAYKSGAK--- 56

Query: 82  TINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 Y+ D ++ F    +             Y  G +        R V    ++ + R
Sbjct: 57  ----EFYIVDLKDEFVKNYVYTSIKFNAVYEGRYLLGTSLA------RPVIAKGMVDIAR 106

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 107 KTGAKYVAHG 116


>gi|260587727|ref|ZP_05853640.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|260541992|gb|EEX22561.1| PP-loop family protein [Blautia hansenii DSM 20583]
          Length = 386

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 30/135 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  ++ V +SGG DS ++A L +    +     DVI + +                  +
Sbjct: 135 KEGDKIAVCISGGKDSMLMAKLFQELQKHRKVNFDVIFLVM-----DPGYNETNRKVIEE 189

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +          +N+   +      F   +               PC  C   ++   L S
Sbjct: 190 N-------ARLLNIPITI------FETNIFE-TVYEIEK----SPCYLC-ARMRRGYLYS 230

Query: 132 VTRQLGADVLATGHY 146
             ++LG + +A GH+
Sbjct: 231 KAKELGCNKIALGHH 245


>gi|164661037|ref|XP_001731641.1| hypothetical protein MGL_0909 [Malassezia globosa CBS 7966]
 gi|226711427|sp|A8PVM6|CTU1_MALGO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|159105542|gb|EDP44427.1| hypothetical protein MGL_0909 [Malassezia globosa CBS 7966]
          Length = 373

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  RV +  SGG DS+V+A ++K   + YD  G+ L L +  +      +      +   
Sbjct: 49  RGDRVAIGASGGKDSTVLAYVMKTLNERYD-YGLNLFLLSIDEG----ITGYRDDSLETV 103

Query: 77  RRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R  +   +   V  Y+E +  +  +    +S         C  C    +   L      
Sbjct: 104 KRNQEQYGIPLKVLGYKELYGWS--MDDIVASIGR---KNNCTFCGVFRR-QALDRGAAS 157

Query: 136 LGADVLATGHYI 147
           LG D + TGH  
Sbjct: 158 LGVDHIVTGHNA 169


>gi|167035317|ref|YP_001670548.1| argininosuccinate synthase [Pseudomonas putida GB-1]
 gi|189046399|sp|B0KUE7|ASSY_PSEPG RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166861805|gb|ABZ00213.1| Argininosuccinate synthase [Pseudomonas putida GB-1]
          Length = 405

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QAMGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
               GAD ++ G
Sbjct: 107 ANATGADAISHG 118


>gi|68536810|ref|YP_251515.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium jeikeium K411]
 gi|91206802|sp|Q4JTG0|GUAA_CORJK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68264409|emb|CAI37897.1| GMP synthase [Corynebacterium jeikeium K411]
          Length = 529

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 225 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F   +                 +          L         
Sbjct: 276 VAAT-GAKLVTVDEREAFLQKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLADAPEGSSV 334

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +         +L  PL  + K+
Sbjct: 335 DFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFKD 385

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 386 EVRAVGRELGLP 397


>gi|323692955|ref|ZP_08107176.1| GMP synthase [Clostridium symbiosum WAL-14673]
 gi|323502956|gb|EGB18797.1| GMP synthase [Clostridium symbiosum WAL-14673]
          Length = 513

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R + A+SGGVDSSV A ++ +  G  +  V     +     K +G         + +   
Sbjct: 217 RALCALSGGVDSSVAAVMMAKAIGKQLTCVF---VDHGLLRKNEGDEVEAIFGPEGQ--- 270

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
              +++    + +ERF   +                 +     ++        +++G  D
Sbjct: 271 --YDLNFVRVNAQERFYEKLAGVSDPEQKRK------IIGEEFIRV--FEEEAKKIGKVD 320

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            L  G        V + G  +  + +           +    +     ++  PL  + K+
Sbjct: 321 FLVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHVDFKEIIEPLRMLFKD 370

Query: 199 SVRDLAREMGLD 210
            VR    E+G+ 
Sbjct: 371 EVRKAGLELGIP 382


>gi|323452846|gb|EGB08719.1| hypothetical protein AURANDRAFT_26092 [Aureococcus anophagefferens]
          Length = 465

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 15  DKNPKDMRVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +P   ++V+A SGG+D+S  +A L    GY+V            A   +        +
Sbjct: 36  EPDPSKPKIVLAYSGGLDTSTQLAYLAHEKGYEVCAY--------IADLGQDDVVDAGAI 87

Query: 74  YDARRVCDTINV-SHYVFDYEERF-----RNAVIVPFASS--YAAGETPL-PCVDCNRTV 124
            + +   +     +    D    F        +         Y  G     PC+   +  
Sbjct: 88  EEIKAKAEASGAYAFECVDLRREFIRDYVYECIKANCLYEGRYLLGTAMARPCIAKKQ-- 145

Query: 125 KFSDLLSVTRQLGADVLATG 144
                + +  + GA+ ++ G
Sbjct: 146 -----VELAWREGAEYVSHG 160


>gi|315497058|ref|YP_004085862.1| argininosuccinate synthase [Asticcacaulis excentricus CB 48]
 gi|315415070|gb|ADU11711.1| argininosuccinate synthase [Asticcacaulis excentricus CB 48]
          Length = 411

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+     +V+  T                  G+++  AR+ 
Sbjct: 10  KKVVLAYSGGLDTSIILKWLQTEYNAEVVTFT-------------ADLGQGEELEPARKK 56

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
            + + +     Y+ D  E F    + P           Y  G +    +   + +     
Sbjct: 57  AELLGIKPENIYIEDLREEFVRDFVFPMFRANTVYEGQYLLGTSIARPLIAKKQI----- 111

Query: 130 LSVTRQLGADVLATG 144
             + R++GAD +  G
Sbjct: 112 -EIARKVGADAVCHG 125


>gi|229825008|ref|ZP_04451077.1| hypothetical protein GCWU000182_00357 [Abiotrophia defectiva ATCC
           49176]
 gi|229790755|gb|EEP26869.1| hypothetical protein GCWU000182_00357 [Abiotrophia defectiva ATCC
           49176]
          Length = 401

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +  +SGG+DS V A ++ R G  V  V         A          + V  AR    
Sbjct: 185 KAMCLLSGGIDSPVAAYMMARRGVKVEAVYFH------APPYTSERAKQKVVDLARLTAR 238

Query: 82  TIN-VSHYVFDYEE 94
               +  YV ++ +
Sbjct: 239 YAGNIKLYVVNFTD 252


>gi|319954143|ref|YP_004165410.1| gmp synthase (glutamine-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319422803|gb|ADV49912.1| GMP synthase (glutamine-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 510

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           DL       +V++ +SGGVDSSV A LL +  G ++  + 
Sbjct: 206 DLKAKIGTDKVILGLSGGVDSSVAAMLLHKAIGKNLHCIF 245


>gi|298345340|ref|YP_003718027.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|298235401|gb|ADI66533.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 528

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 45/212 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+  +SGGVDSSV AAL+ +  G  +  +                    +
Sbjct: 216 EIRQRVGDAQVICGLSGGVDSSVAAALVHKAIGDQLTCIF--------VDHGLLRAGERE 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAGETPLPCV 118
            V   R     + +     D   RF            +  +I   F  S+ A +      
Sbjct: 268 QVE--RDYAANMGIRVKSVDESARFLGALAGVSEPEQKRKIIGREFIRSFEAAQ------ 319

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
                    +L++     G +V            V   G       +           + 
Sbjct: 320 --------RELVAEIGASGGEVKFLVQGTLYPDVVESGGGSGTANIKSHHN-------VG 364

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              +    +L  PL  + K+ VR L RE+GL 
Sbjct: 365 GLPEDLKFELIEPLRKLFKDEVRALGRELGLP 396


>gi|154504409|ref|ZP_02041147.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149]
 gi|153795338|gb|EDN77758.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149]
          Length = 245

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 49/226 (21%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   + V +SGG DS         LKR     +++  +T+ L                 D
Sbjct: 22  EGDHIAVGISGGKDSLTLLYALHGLKRFYPKKFELSAITVDLGFED------------FD 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   + +C  +N+  Y  +  + +                   PC  C +  K   L   
Sbjct: 70  LSPIQALCQELNIP-YRIESSDIYE------ILFHVRKES--NPCSLCAKMRK-GALNQA 119

Query: 133 TRQLGADVLATGHY---------------IRSRLYVGDDGKRRRIMC--RPMDLERDQSY 175
            +++G + +A  H+                R   +       R  +   RPM    D+  
Sbjct: 120 IKEMGCNKIAYAHHKDDIIETMLLSLIFEGRFYSFSPKTYLDRTDLTVIRPMMFV-DEKD 178

Query: 176 FLFATTQQQLC--DLRFPLGDMKKES-VRDLAREMGLDIADKSDSQ 218
            +    + QL     + P+    K   V++L R++  +     +  
Sbjct: 179 VIGFKNKYQLPVVKSKCPVDGYTKRQYVKELLRQLNHENPGVRERM 224


>gi|290559553|gb|EFD92882.1| hypothetical protein BJBARM5_0389 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 333

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           N K   ++  +SGG DSS +   LK+ G+  +  T  +                 +   A
Sbjct: 51  NGKKYDIMAGISGGKDSSAMLYTLKKMGFKPLAFTFDI-----------GYYPMHEFSRA 99

Query: 77  RRVCDTINVSHYVFDYEE 94
           R V  T+ V + V D  +
Sbjct: 100 RAVAKTLGVDYEVIDIRK 117


>gi|224824999|ref|ZP_03698105.1| Argininosuccinate synthase [Lutiella nitroferrum 2002]
 gi|224602670|gb|EEG08847.1| Argininosuccinate synthase [Lutiella nitroferrum 2002]
          Length = 406

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 64/202 (31%), Gaps = 66/202 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G++V  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADIGQGEEVEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  VALGIKQENIFIDDLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +  Q GAD ++ G                           DQ              +RF
Sbjct: 107 EIANQTGADAVSHG---------------------ATGKGNDQ--------------VRF 131

Query: 191 PLGDM-KKESVRDLA--REMGL 209
            LG    K  V+ +A  RE  L
Sbjct: 132 ELGYYALKPDVKVIAPWREWDL 153


>gi|115437102|ref|XP_001217726.1| GMP synthase [Aspergillus terreus NIH2624]
 gi|114188541|gb|EAU30241.1| GMP synthase [Aspergillus terreus NIH2624]
          Length = 542

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 56/211 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VCD 81
           V+ A+SGGVDS+V AAL+K      IG      +  KA      C    +    ++ + +
Sbjct: 234 VLGAVSGGVDSTVGAALMKAA----IG------DRFKAILIDNGCMRLNECEQVKQTLGE 283

Query: 82  TINVSHYVFDYEERF------------RNAVI-VPFAS---------SYAAGETPLPCVD 119
            + ++  V D  + F            +  +I   F              A  TP     
Sbjct: 284 HLGINLTVVDAGDLFLGRLAGVSDPEKKRKIIGSTFIDLFEQEAIRIEKEAENTPN---- 339

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
              + K    L  T             I S  + G     +         ER        
Sbjct: 340 ---SGKVEWFLQGTL--------YPDVIESLSFRGPSATIKTHHNVGGLPER-------M 381

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              Q L  L  PL  + K+ VR + R++G+ 
Sbjct: 382 MNGQGL-RLIEPLRLLFKDEVRAIGRQLGIH 411


>gi|147921058|ref|YP_685132.1| NH(3)-dependent NAD(+) synthetase [uncultured methanogenic archaeon
           RC-I]
 gi|110620528|emb|CAJ35806.1| NH(3)-dependent NAD(+) synthetase [uncultured methanogenic archaeon
           RC-I]
          Length = 269

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 38/188 (20%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +A+SGG+DS++VA L  R    V+ V   L     ++         +D+ DA  +   + 
Sbjct: 36  IALSGGIDSALVATLASR----VVDVYGLLLPDSAST-------TPEDMRDAELLAKELG 84

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   V +  +    AV             P  C      VK         ++  +  A  
Sbjct: 85  IDCEVIEIGDL-VQAVYDR-----RPRIGPAECRLAYANVKPR------MRMIVNYFAAN 132

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
              R  L  G+    +  +      +    Y               P+GD+ K  VR +A
Sbjct: 133 LDGRVVLGTGN----KTELLMGYFTK----YGDGGVD-------ILPIGDLYKTQVRQMA 177

Query: 205 REMGLDIA 212
           + + +  A
Sbjct: 178 KHLEVPAA 185


>gi|297544802|ref|YP_003677104.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842577|gb|ADH61093.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 235

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 30/131 (22%)

Query: 23  VVVAMSGGVDSSVV----AALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + V +SGG DS V       LLK      ++V+G+ L L                 D   
Sbjct: 24  IAVGVSGGKDS-VTLLYGLHLLKNFYPKKFEVMGLMLTL------------GYDNFDPKP 70

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C    +  ++   E   +  V               PC  C   ++   L +  ++
Sbjct: 71  VENFCREKEIPFFIK--ETEIKKIVFDYRKEE-------NPCSLC-ANLRRGALNNFAKE 120

Query: 136 LGADVLATGHY 146
            G + +A  H+
Sbjct: 121 KGCNKVALAHH 131


>gi|284929537|ref|YP_003422059.1| NH(3)-dependent NAD(+) synthetase [cyanobacterium UCYN-A]
 gi|284809981|gb|ADB95678.1| NH(3)-dependent NAD(+) synthetase [cyanobacterium UCYN-A]
          Length = 561

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VA++     G  +V+G+ +                +   + DA+ +
Sbjct: 305 KVVLGLSGGIDSSLVASIAVEALGAKNVLGILM-----------PSPYSSQHSITDAKHL 353

Query: 80  CDTINVSHYVFD-----YEERFRNAVIVPFASSYAAGETPLPCVDCNRTV----KFSDLL 130
            D + ++ Y+           +   V+        A E     +  N  +    KF  LL
Sbjct: 354 ADNLGINSYMIPIDNIMLAYTYSLDVLFKTVDIGIAEENLQSRIRGNILMAIANKFGHLL 413


>gi|260911659|ref|ZP_05918239.1| GMP synthase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634207|gb|EEX52317.1| GMP synthase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 514

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 63/200 (31%), Gaps = 45/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D RV++ +SGGVDSSV AALL R     IG  +T    +     K +             
Sbjct: 213 DDRVILGLSGGVDSSVCAALLNRA----IGDKLTCIFVDHGMLRKNEFQKVMEAY----- 263

Query: 78  RVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                + ++    D  ++F      V  P       G   +     N   K        +
Sbjct: 264 ---KGLGLNVIGVDASDKFFADLEGVSDPEEKRKIIGRDFVEVF--NAEAK--------K 310

Query: 135 QLGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              A  LA        I S    G   K                  +    ++    L  
Sbjct: 311 ITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPKEMHLKLCE 356

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +  EMG+ 
Sbjct: 357 PLQWLFKDEVRRVGLEMGMP 376


>gi|199594506|gb|ACH90717.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGDKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERF 96
             + + V     +  +R+
Sbjct: 86  -AEHMGVKVVRVNAADRY 102


>gi|172040081|ref|YP_001799795.1| GMP synthase [Corynebacterium urealyticum DSM 7109]
 gi|171851385|emb|CAQ04361.1| GMP synthase [Corynebacterium urealyticum DSM 7109]
          Length = 523

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 20/193 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D R +  +SGGVDS+V AA+++R  G  +  V     +       +             
Sbjct: 218 EDGRAICGLSGGVDSAVAAAIVQRAVGDRLTCVF---VDHGLLRAGEREQVENDF----- 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D  E F   +                 +          L        
Sbjct: 270 -VAAT-GAKLVTVDEREAFLKRLDGVTDPEAKRKAIGAEFIRSFERAVAGVLADSPEGST 327

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +          L  PL  + K
Sbjct: 328 VDFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFKLVEPLRQLFK 378

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 379 DEVRAVGRELGLP 391


>gi|317495293|ref|ZP_07953663.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           moribillum M424]
 gi|316914715|gb|EFV36191.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           moribillum M424]
          Length = 416

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RVC 80
           + ++ +SGG+DS V A +L+  G +V  V  Q       S    S  A Q ++D   ++ 
Sbjct: 180 KALLLLSGGIDSPVAAHMLQVKGVEVEMVHFQ-------SPPFTSADALQKIFDLTIKLS 232

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + +  +  +V ++ +  +  ++    S+Y    T        R         V ++ G  
Sbjct: 233 EVVGKIKLHVVNFTKL-QTEIVKCVPSNYTMTST--------RRFMLRIAEEVAKREGCL 283

Query: 140 VLATGHYI 147
            LATG  +
Sbjct: 284 ALATGESL 291


>gi|194744309|ref|XP_001954637.1| GF16645 [Drosophila ananassae]
 gi|190627674|gb|EDV43198.1| GF16645 [Drosophila ananassae]
          Length = 443

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 50/153 (32%), Gaps = 30/153 (19%)

Query: 2   VVSEATRLN-SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
             S    LN +  ++       V++A SGG+D+S +   L    Y+VI V          
Sbjct: 8   AFSVLAPLNGASQVNGRMTGETVILAYSGGLDTSCILKWLLDQKYEVICV---------- 57

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVF-DYEERFRNAVIVPFA-------SSYAAGE 112
                     +D   A +    I     +  D +  F    I P           Y  G 
Sbjct: 58  ---LADVGQKEDFVAAEKKALKIGAKKVIVSDVKRSFVEDYIWPAVQMGLVYEERYLLGT 114

Query: 113 TPL-PCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   PC+          L+   RQ GA  LA G
Sbjct: 115 SLARPCISV-------ALMEAARQCGAKYLAHG 140


>gi|74057362|gb|AAZ97802.1| argininosuccinate synthase [Thiobacillus denitrificans ATCC 25259]
          Length = 456

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 67/217 (30%), Gaps = 70/217 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 52  KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPARQKA 99

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     Y+ D  E F    + P           Y  G +    +   R      L+
Sbjct: 100 LQFGIKPEQIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LI 153

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +    GAD +  G                           DQ              +RF
Sbjct: 154 EIVNATGADAICHG---------------------ATGKGNDQ--------------VRF 178

Query: 191 PLGDM-KKESVRDLA--REMGL----DIADKSDSQDI 220
            LG    K  V+ +A  RE  L     +   ++S  I
Sbjct: 179 ELGAYALKPDVKVIAPWREWDLLSREKLLAYAESHGI 215


>gi|262306065|gb|ACY45625.1| gln amidotransferase [Limnadia lenticularis]
          Length = 193

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 17/88 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD---GYD---VIGVTLQLYNSRKASKRKGSCCAGQD 72
           +D  +++ +SGGVDS+V AALL +    G D   V  V +     RK    +        
Sbjct: 43  RDKTILMLVSGGVDSAVCAALLHKALSDGEDNSRVQAVHIDNGFLRKNESEQVVESL--- 99

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAV 100
                    ++ ++  V +    F ++V
Sbjct: 100 --------RSLGLNLKVVNATLTFLDSV 119


>gi|169831045|ref|YP_001717027.1| PP-loop domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637889|gb|ACA59395.1| PP-loop domain protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 307

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 23/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARR 78
           RV   +SGG DS+ +  +L           L+ Y+  +               D    R 
Sbjct: 39  RVAAGVSGGKDSTALLYIL---------AYLRDYSHLRFELEAVMLDLGWGEVDFEPHRE 89

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  + V  ++           + P A      E   PC  C + ++   L      LGA
Sbjct: 90  FCRRLGVPLHIH----------VRPVAGIIRDKEGMNPCKLCGK-LRAGILNQAALSLGA 138

Query: 139 DVLATGHYI 147
           + +A GH++
Sbjct: 139 NRVALGHHL 147


>gi|325263925|ref|ZP_08130658.1| ExsB family protein [Clostridium sp. D5]
 gi|324030963|gb|EGB92245.1| ExsB family protein [Clostridium sp. D5]
          Length = 244

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +   + V +SGG DS         LKR          + +     +   G      D+  
Sbjct: 22  EGDHIAVGISGGKDSLTLLYALHGLKR-------FYPKHFELSAITVNLGF--ENFDLSP 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            + +C  + V + + D  E +                   PC  C +  K   L    ++
Sbjct: 73  IQALCKELEVPYRIVD-SEIY------HILFDVRKET--NPCSLCAKMRK-GALNDAIKE 122

Query: 136 LGADVLATGHY 146
           +G + +A  H+
Sbjct: 123 MGCNKVAYAHH 133


>gi|237742199|ref|ZP_04572680.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 4_1_13]
 gi|229429847|gb|EEO40059.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 4_1_13]
          Length = 258

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDGLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLKINAKTIE---------ITDMIDAYFKNEKDASSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|282859363|ref|ZP_06268471.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella bivia JCVIHMP010]
 gi|282587848|gb|EFB93045.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella bivia JCVIHMP010]
          Length = 514

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 59/214 (27%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT----L--QLYNSRKASKRKG 65
           DL K   + RV++ +SGGVDSSV A LL +  G ++  +     +  +    +     KG
Sbjct: 206 DLKKQLGNDRVILGLSGGVDSSVCATLLNKAIGKNLTCIFVDHGMLRKNEFEKVMEAYKG 265

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                            + ++    D  E+F              G T     +  R + 
Sbjct: 266 -----------------LGLNVIGVDASEKFFKD---------LEGVT---DPEQKRKII 296

Query: 126 FSDLLSV----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
             D + V     +++  A  LA        I S    G   K                  
Sbjct: 297 GRDFVEVFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN-------------- 342

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    ++    L  PL  + K+ VR +   MG+ 
Sbjct: 343 VGGLPEEMHLQLCEPLQWLFKDEVRRVGYSMGMP 376


>gi|297562935|ref|YP_003681909.1| GMP synthase, large subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847383|gb|ADH69403.1| GMP synthase, large subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 526

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 65/196 (33%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDS+V  AL++R  G  +  V            RKG     +   D   
Sbjct: 221 DKRVICALSGGVDSAVAGALVQRAVGDQLTCVF-----VDHGLLRKGEAEQVE--KDFVA 273

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +         V D EERF             +    +   +  R +   + + V  Q   
Sbjct: 274 IT---GAKLKVVDAEERF------------LSALAGVSDPEEKRKIIGREFIRVFEQAAR 318

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMC-RPMDLERDQSYFLFATT--QQQLCDLRF-PLGD 194
           +V+A      + +     G     +                        L      PL +
Sbjct: 319 EVVAESGETGAEVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPDDLQFTLVEPLRE 378

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +  E+GL 
Sbjct: 379 LFKDEVRKVGEELGLP 394


>gi|149912904|ref|ZP_01901438.1| argininosuccinate synthase [Roseobacter sp. AzwK-3b]
 gi|149813310|gb|EDM73136.1| argininosuccinate synthase [Roseobacter sp. AzwK-3b]
          Length = 408

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELDPARQ 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P           Y  G +    +   R      
Sbjct: 51  KAEMLGIKPENIFIEDVREEFVRDFVFPMFRANAVYEGQYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  + GAD +A G
Sbjct: 105 LVEIAEETGADAVAHG 120


>gi|146304735|ref|YP_001192051.1| argininosuccinate synthase [Metallosphaera sedula DSM 5348]
 gi|172046953|sp|A4YI75|ASSY_METS5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145702985|gb|ABP96127.1| argininosuccinate synthase [Metallosphaera sedula DSM 5348]
          Length = 391

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 48/230 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++V+A SGG+D++V    L    + +VI V+    +  +    K           A+  
Sbjct: 1   MKIVLAYSGGLDTTVAIKWLSETFHAEVISVS---VDVGQKDDFKKIEERAYKAGSAK-- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                  HY+ D +  F     +         E   P      R +    +  V ++ G 
Sbjct: 56  -------HYLVDAKREFAENFALKDIKMNGLYEEVYPLATALARPLIAEKVAEVAKKEGT 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--LGDMK 196
           + +A G   +    V  D      +   +D  +                +  P  +  M 
Sbjct: 109 EYVAHGSTSKGNDQVRFD----LALKTALDNVK----------------IIAPARIWKMT 148

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           +E     ARE G+ I            +  KY   +     G ++EGDI+
Sbjct: 149 REDEIAYARERGIPIKT----------ESSKYS--IDENLWGRSIEGDII 186


>gi|145298852|ref|YP_001141693.1| GMP synthase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|226738376|sp|A4SM23|GUAA_AERS4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|142851624|gb|ABO89945.1| GMP synthase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 526

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 228 DDEVILGLSGGVDSSVVAMLVHRAIGDRLTCVFVDNGLLRLNEGEQVMEMFG-------- 279

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    + EERF         S+ A  + P         V         
Sbjct: 280 -------DHFGLNIIKVEAEERF--------LSALAGEDEPEAKRKIIGRVFVEVFDDEA 324

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +     +    L  PL
Sbjct: 325 KKLKNARWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGMPAEMKMGLVEPL 377

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR +  E+GL 
Sbjct: 378 RELFKDEVRRVGLELGLP 395


>gi|46205154|ref|ZP_00048944.2| COG0518: GMP synthase - Glutamine amidotransferase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 304

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 21/81 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           +V+  +SGGVDSSV A L+    G  +  V      ++L    +                
Sbjct: 225 KVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDHGLMRLGEGDEV--------------- 269

Query: 76  ARRVCDTINVSHYVFDYEERF 96
            R   D  N+     + ++ F
Sbjct: 270 VRLFRDHYNIPLVHVEAQDLF 290


>gi|297170477|gb|ADI21507.1| ATP-utilizing enzymes of the PP-loop superfamily [uncultured
           verrucomicrobium HF0070_15G23]
          Length = 274

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 49/229 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS+++A +              L +   A          +++ +A+ +    
Sbjct: 23  LVAYSGGVDSALLAVVAHEQ----------LGDRMLAVIADSPSLPRRELSEAKLLAVEH 72

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            +  ++    E           S Y +   P   C  C   + FS L  +       V+A
Sbjct: 73  AIPLHILHTSE------FDN--SEYQS--NPVNRCFYCKHEL-FSHLKPLAIDRKMSVIA 121

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G        V D G  R         E                 +R PL   D+ K+++
Sbjct: 122 YGE------NVSDLGDWRPGAEAASKFE-----------------VRAPLKEADLTKDNI 158

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249
           R+++  + L  ADK   Q  C   +  Y   V     G+  E ++   +
Sbjct: 159 REISSYLRLPTADKP--QTPCLSSRIPYGQKVTPEKVGMIEEAELFLRD 205


>gi|313886379|ref|ZP_07820102.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924155|gb|EFR34941.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 506

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 58/187 (31%), Gaps = 41/187 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++A+SGGVDSSV A LL R  G  +  +      ++L  + +      +   G    DA
Sbjct: 215 VIMALSGGVDSSVAAVLLHRAIGDQLTCIFVDHGLMRLGEAEQILADYKALGLGCIKVDA 274

Query: 77  RRVCDTINVSHYVFDYEERFRNAVI-VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 +     V D     +  VI   F   + A    LP                   
Sbjct: 275 S--AKFLGDLAGVRD--PEAKRKVIGRDFIEVFEAEAKKLPQARW--------------- 315

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG   +     I S    G   K                  +    ++    L  PL  +
Sbjct: 316 LGQGTI-YPDIIESINITGKVIKSHHN--------------VGGLPERMHLKLVEPLKHL 360

Query: 196 KKESVRD 202
            K+ VR 
Sbjct: 361 FKDEVRR 367


>gi|225378331|ref|ZP_03755552.1| hypothetical protein ROSEINA2194_03992 [Roseburia inulinivorans DSM
           16841]
 gi|225209768|gb|EEG92122.1| hypothetical protein ROSEINA2194_03992 [Roseburia inulinivorans DSM
           16841]
          Length = 414

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 28/142 (19%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N  +L K     R+ V +SGG DS ++A L +          L+++N      +     
Sbjct: 163 INQYELVKP--GDRIAVCISGGKDSMLMAKLFQE---------LKIHNKFDFEVKFLVMD 211

Query: 69  AGQDVYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
            G    + R+V       +N+   +      F + +     S Y   ++  PC  C   +
Sbjct: 212 PGYSPAN-RKVIEENARKLNIPITI------FESDIFD---SVYNIEKS--PCYLC-ARM 258

Query: 125 KFSDLLSVTRQLGADVLATGHY 146
           +   L    ++LG + +A GH+
Sbjct: 259 RRGHLYHFAQELGCNKIALGHH 280


>gi|14521917|ref|NP_127394.1| hypothetical protein PAB1127 [Pyrococcus abyssi GE5]
 gi|5459137|emb|CAB50623.1| Hypothetical protein [Pyrococcus abyssi GE5]
          Length = 242

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          RL   + +++  ++++ VA SGG DSS    +L+  G+DV+ +T +L
Sbjct: 43 RLTGKEFERDKINVKIAVAYSGGSDSSATVKILRWAGFDVVPITARL 89


>gi|253701774|ref|YP_003022963.1| NAD synthetase [Geobacter sp. M21]
 gi|251776624|gb|ACT19205.1| NAD+ synthetase [Geobacter sp. M21]
          Length = 328

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 67/216 (31%), Gaps = 44/216 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VVA+SGG+DSSV AAL  R  G + VIG+ +            G            ++  
Sbjct: 40  VVALSGGIDSSVTAALAVRAIGKERVIGLEM------PERHSSGESQKLSG-----KLAA 88

Query: 82  TINVS---------HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLL- 130
           ++ +                   +  AV       Y  G      +  N     F+    
Sbjct: 89  SLGIETVLEEISAALEAVGCYRNYDEAV-RMVVPGYGEGWKSKIVISNNMEHPGFTSFYL 147

Query: 131 ---SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC-------------RPMDLERDQS 174
                 + +    L    Y++         + R+++               P  LE DQ 
Sbjct: 148 VVQDGAQGITRVRLPFKPYLQIVAATNFKQRIRKMLEYYHADRLNFAVAGTPNRLEYDQG 207

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +F+             P+  + K  V  LA  +G+ 
Sbjct: 208 FFV-KLGDGAAD--IKPIAHLYKSQVYQLAEYLGVP 240


>gi|124023980|ref|YP_001018287.1| ATP-utilizing enzymes of the PP-loop superfamily protein
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964266|gb|ABM79022.1| ATP-utilizing enzymes of the PP-loop superfamily protein
           [Prochlorococcus marinus str. MIT 9303]
          Length = 279

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 57/202 (28%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-G---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV VA SGGVDS++VAA+ +   G   + V GV+  L              A + + +AR
Sbjct: 28  RVCVAYSGGVDSALVAAIAREQLGPQAFAVTGVSPAL--------------APELLDEAR 73

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQL 136
           +    + + H                        E   P    N T + F+    + R L
Sbjct: 74  QQAAWLEIRH------------------QECMTKELDDPAYSSNPTDRCFACKRELHRHL 115

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G     A G  +   +   D G+ R  +                        +R PL ++
Sbjct: 116 GPIAKSAGGAQVVDGVNHDDLGEHRPGIEAGRQAG-----------------VRSPLAEL 158

Query: 196 K--KESVRDLAREMGLDIADKS 215
           +  K  VR ++R +G    DK 
Sbjct: 159 EIGKAGVRQMSRALGFPWWDKP 180


>gi|115397919|ref|XP_001214551.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192742|gb|EAU34442.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 687

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 25/130 (19%)

Query: 27  MSGGVDSSVVA----ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD------- 75
           +SGG+DSS VA     L+K +G        +L N       +  C   Q   D       
Sbjct: 239 LSGGIDSSAVAGMVVHLVKEEGA-------RLGNDDSQILSRIKCFTVQFDKDSGVDESD 291

Query: 76  -ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A+R  + + V  +         NA++  F       E PLP ++    +    +    +
Sbjct: 292 IAQRTAEWLGVDFHPV---PIDENAMVARFEDLVWHSEIPLPDINGIGRL---AMAETAK 345

Query: 135 QLGADVLATG 144
             G  V+ TG
Sbjct: 346 AHGIKVILTG 355


>gi|89052558|ref|YP_508009.1| argininosuccinate synthase [Jannaschia sp. CCS1]
 gi|119361282|sp|Q28WC8|ASSY_JANSC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|88862107|gb|ABD52984.1| argininosuccinate synthase [Jannaschia sp. CCS1]
          Length = 407

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 49/208 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
             + +  +  YV D  E F    + P   + A  E          R +    L+ +  + 
Sbjct: 51  KAEMMGAAGIYVEDLREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAEET 110

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFP-- 191
           GAD ++ G                           DQ  F    ++   +    +  P  
Sbjct: 111 GADAVSHG---------------------ATGKGNDQVRFELCAYSLNPEIE--VIAPWR 147

Query: 192 ---LGDMKKESVRDLAREMGLDIADKSD 216
              LG   K  + + A +  + IA    
Sbjct: 148 KWELGSRTK--LIEFAEKHQIPIAKDKR 173


>gi|77360059|ref|YP_339634.1| regulator protein [Pseudoalteromonas haloplanktis TAC125]
 gi|110816244|sp|Q3IKE8|QUEC_PSEHT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|76874970|emb|CAI86191.1| putative regulator protein [Pseudoalteromonas haloplanktis
          TAC125]
          Length = 218

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V     + G+DV  +          S   G     +++  A +VC
Sbjct: 3  QKVVVIYSGGMDSFTVLNKALQQGHDVYAL----------SFDYGQ-RHVKELKVAAQVC 51

Query: 81 DTINVSHYVFDYE 93
            +NV H + D  
Sbjct: 52 KQLNVPHKIVDIS 64


>gi|312877002|ref|ZP_07736976.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796233|gb|EFR12588.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 303

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +V+V +SGG DS +    +L  +GY+V G+ +      + S +              
Sbjct: 46  KKDKVLVVISGGKDS-MALWHILASEGYNVTGMYI-NLGIGQYSDKSQQV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D ++ +   +     S      T   C  C   +K      V    G
Sbjct: 96  SFAQKNGLELIVKDIKKEYGLDI--YKLSKLLKRST---CSVCGS-IKRYLFNKVAYDGG 149

Query: 138 ADVLATGHYI 147
              +ATGH +
Sbjct: 150 FSAVATGHNL 159


>gi|298675437|ref|YP_003727187.1| GMP synthase large subunit [Methanohalobium evestigatum Z-7303]
 gi|298288425|gb|ADI74391.1| GMP synthase, large subunit [Methanohalobium evestigatum Z-7303]
          Length = 304

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 41/214 (19%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           MV  +     S +  K   D + ++A+SGGVDSSV   L     G +++ + +       
Sbjct: 1   MVKVDKFIQKSTEKIKEQIDGKAIIALSGGVDSSVCTVLAHNAIGDNLVPIYI-----ET 55

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLP 116
              RKG     ++           +++  V + + RF NA   V  P     A GET   
Sbjct: 56  GLMRKGETERIKET--------FADMNLRVVNMKNRFLNALEGVEDPEEKRRAVGETF-- 105

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
                          + ++  A+ L  G     R+   D G +       +    D    
Sbjct: 106 ---------IRVFEEIAKEEQAEYLIQGTIYPDRIES-DGGIKSHHNVGGLPDVVD---- 151

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                     D+  P+ D+ K+ VR++A+ + L 
Sbjct: 152 --------FKDIVEPISDLYKDEVREVAKALDLP 177


>gi|292492798|ref|YP_003528237.1| argininosuccinate synthase [Nitrosococcus halophilus Nc4]
 gi|291581393|gb|ADE15850.1| argininosuccinate synthase [Nitrosococcus halophilus Nc4]
          Length = 405

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G++V  AR  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLRETYGCEVVTFT-------------ADIGQGEEVAPARAK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + + V   YV +  E F    + P           Y  G +    +   R      L  
Sbjct: 52  AEALGVKEIYVEELCEEFARDYVFPMFRANTLYEGEYLLGTSIARPLIAKR------LAE 105

Query: 132 VTRQLGADVLATG 144
           +  +  AD +A G
Sbjct: 106 IASETSADAIAHG 118


>gi|296109161|ref|YP_003616110.1| Queuosine synthesis-like protein [Methanocaldococcus infernus ME]
 gi|295433975|gb|ADG13146.1| Queuosine synthesis-like protein [Methanocaldococcus infernus ME]
          Length = 246

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 39/143 (27%)

Query: 8   RLNSLDLDKNPKDMR---VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKR 63
           RL +LD  K     +    V+A SGGVDSS  A         VIG   + L+  +     
Sbjct: 35  RLETLDFYKKVSAKKKYEAVLAFSGGVDSSASA---------VIG---RELFKIKAVFCY 82

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                    +   + +   + +   +   D +  ++ +VI      Y       PC  C+
Sbjct: 83  SPYLHKESYLDYIKELTKKLKIKLEIVEVDLDRIYKESVIEN---RYH------PCGRCH 133

Query: 122 R------------TVKFSDLLSV 132
           +             V F DLL+ 
Sbjct: 134 KIIEESIYERAKDFVIFGDLLAF 156


>gi|196019728|ref|XP_002119029.1| hypothetical protein TRIADDRAFT_35073 [Trichoplax adhaerens]
 gi|190577245|gb|EDV18485.1| hypothetical protein TRIADDRAFT_35073 [Trichoplax adhaerens]
          Length = 345

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 30/195 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+ +SGGVDS+VVA LL +  G  +  + +     R     +      + + D    
Sbjct: 47  KKVVLGLSGGVDSTVVATLLNKAIGKQLYCIFVDNGLLRSNEVEE----VEKSLKD---- 98

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GA 138
               ++   + D  E F         S       P         V         +++   
Sbjct: 99  --NFDLQIRIIDASESF--------LSELKNVTDPEEKRKIIGRVFIETFQKAIKEIDDV 148

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ--LCDLRFPLGDMK 196
           + LA G      +        +++  +           +    +    L  L  PL  + 
Sbjct: 149 EYLAQGTIYPDVIESAATSTGKKVTIKSHHN-------VGGLPEDMGNL-KLIEPLKLLF 200

Query: 197 KESVRDLAREMGLDI 211
           K+ VR L +E+G+  
Sbjct: 201 KDEVRRLGKELGVPN 215


>gi|163816638|ref|ZP_02208001.1| hypothetical protein COPEUT_02828 [Coprococcus eutactus ATCC 27759]
 gi|158447895|gb|EDP24890.1| hypothetical protein COPEUT_02828 [Coprococcus eutactus ATCC 27759]
 gi|295093008|emb|CBK82099.1| argininosuccinate synthase [Coprococcus sp. ART55/1]
          Length = 412

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK   GYDVI   +   +  + S+ +G     +       
Sbjct: 5   KVVLAYSGGLD--TTAIIPWLKETYGYDVICACI---DVGQESELEGLDERAKYSG---- 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
             + +    Y+ D  +   +  I+P           Y  G +        R +    L+ 
Sbjct: 56  -AEKL----YIIDVVDELCDEYIMPTVQADAVYENKYLLGTSFA------RPIIAKKLVE 104

Query: 132 VTRQLGADVLATG 144
           V R+ GA  +  G
Sbjct: 105 VARKEGAVAICHG 117


>gi|237737357|ref|ZP_04567838.1| succinoglycan biosynthesis regulator [Fusobacterium mortiferum
          ATCC 9817]
 gi|229421219|gb|EEO36266.1| succinoglycan biosynthesis regulator [Fusobacterium mortiferum
          ATCC 9817]
          Length = 232

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          MRV+V +SGGVDSS   A+     G D V+ +          S   G     +++  AR+
Sbjct: 1  MRVLVLLSGGVDSSTCLAMAVDRYGKDNVVAL----------SASYGQ-KHTKELESARK 49

Query: 79 VCDTINVSHYVFDYEERFR 97
          +     +     +  + F 
Sbjct: 50 IASYYQIELIEINLGKIFS 68


>gi|28393249|gb|AAO42053.1| putative GMP synthase [Arabidopsis thaliana]
          Length = 534

 Score = 49.8 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 35/203 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D  V+ A+SGGVDS+V A L+ +     IG  L          R        D ++   
Sbjct: 226 SDEHVICALSGGVDSTVAATLVHKA----IGDRLHCIFVDNGLLRYKEQERVMDTFE--- 278

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  ERF +    V+ P        ET    +       F        +
Sbjct: 279 --RDLHLPVTCVDASERFLSELKGVVDP--------ETKRKIIGGEFINIFDQFAQELEK 328

Query: 136 LGADVLA-------TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 A           I S    G D      +    +        +    +     L
Sbjct: 329 KHGKKPAFLVQGTLYPDVIESCPPPGTDRTHSHTIKSHHN--------VGGLPKDMKLKL 380

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL  + K+ VR+L R + + +
Sbjct: 381 IEPLKLLFKDEVRELGRILNVPV 403


>gi|108763299|ref|YP_632241.1| hypothetical protein MXAN_4063 [Myxococcus xanthus DK 1622]
 gi|108467179|gb|ABF92364.1| conserved hypothetical protein TIGR00268 [Myxococcus xanthus DK
           1622]
          Length = 298

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 70/213 (32%), Gaps = 47/213 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS+ V  +   +          L +   A     +  A ++  +AR +   +
Sbjct: 32  LVAFSGGVDSTFVLKVAVEE----------LGDRALALTALSASVAPEEADEARELATRL 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
              H V    E             YAA  T   C  C   + +    +  + LG  V+  
Sbjct: 82  GARHVVLGSNEL--------ANPQYAANPT-NRCYFCKTEL-YDICEAQRKSLGLAVVLD 131

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESVR 201
           G          DD K  R   +                  Q   +  PL    + KE +R
Sbjct: 132 GFNA-------DDFKDHRPGHKA----------------AQEHQVVSPLAQAGLTKEEIR 168

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             ++ +GL   DK   Q  C   +  Y   V R
Sbjct: 169 AWSQSLGLPTWDKP--QMACLASRIPYGTAVTR 199


>gi|46446494|ref|YP_007859.1| hypothetical protein pc0860 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400135|emb|CAF23584.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 246

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 32/131 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKR---DGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG DS  +  LLK     G+   ++  +             + SC AG +   
Sbjct: 36  KIAVALSGGKDSLTLLYLLKAISGRGFPNLEIHAIH---------VSGEFSCGAGVNEDY 86

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R +C  I V        ++                   L C  C+R  +   L    + 
Sbjct: 87  LRAICQEIGVQLTTRISTQKLEK----------------LECYSCSRERR-RLLFEAAKS 129

Query: 136 LGADVLATGHY 146
           LG   +A GH+
Sbjct: 130 LGITTIAFGHH 140


>gi|325960077|ref|YP_004291543.1| GMP synthase, large subunit [Methanobacterium sp. AL-21]
 gi|325331509|gb|ADZ10571.1| GMP synthase, large subunit [Methanobacterium sp. AL-21]
          Length = 308

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 42/202 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ K   D + ++A+SGGVDSSV + L     G +++ V     +     + +       
Sbjct: 14  DIKKTIGDGKAIIALSGGVDSSVASVLTSTAIGENLVAVF---VDHGLLREGESDYVNNT 70

Query: 72  DVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    D +N      D  E F    + V  P       GE                
Sbjct: 71  FK-------DRLN--LRTVDASEEFLSRLDGVYDPEEKRKIIGEVF-----------IRV 110

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              V  ++GA+ L  G      +      K    +                     + ++
Sbjct: 111 FERVAEEVGAEFLVQGTIAPDWIESEGQIKSHHNIA---------------LPHGLVLNI 155

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             P+ ++ K+ VR +  E+GL 
Sbjct: 156 VEPIRELYKDEVRVVGTELGLP 177


>gi|315655759|ref|ZP_07908657.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
 gi|315489823|gb|EFU79450.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
          Length = 528

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 66/218 (30%), Gaps = 57/218 (26%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+  +SGGVDSSV AAL+ +  G  +  +                    +
Sbjct: 216 EIRQRVGDAQVICGLSGGVDSSVAAALVHKAIGDQLTCIF--------VDHGLLRAGERE 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAG--ETPLP 116
            V   R     + +     D   RF            +  +I   F  S+ A   E    
Sbjct: 268 QVE--RDYAANMGIRVKSVDESARFLGALAGVSEPEQKRKIIGREFIRSFEAAQREVVAE 325

Query: 117 CVDCNRTVKF---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
                  VKF     L   V    G    A      +   + +D K              
Sbjct: 326 IGASGGEVKFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLKFE------------ 373

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                          L  PL  + K+ VR L RE+GL 
Sbjct: 374 ---------------LIEPLRKLFKDEVRALGRELGLP 396


>gi|289578527|ref|YP_003477154.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528240|gb|ADD02592.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 235

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 30/131 (22%)

Query: 23  VVVAMSGGVDSSVV----AALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + V +SGG DS V       LLK      ++V+G+ L L                 D   
Sbjct: 24  IAVGVSGGKDS-VTLLYGLHLLKNFYPKKFEVMGLMLTL------------GYDNFDPKP 70

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C    +  ++   E   +  V               PC  C   ++   L +  ++
Sbjct: 71  VENFCREKEIPFFIK--ETEIKKIVFDYRKEE-------NPCSLC-ANLRRGALNNFAKE 120

Query: 136 LGADVLATGHY 146
            G + +A  H+
Sbjct: 121 KGCNKVALAHH 131


>gi|296109149|ref|YP_003616098.1| exsB protein [Methanocaldococcus infernus ME]
 gi|295433963|gb|ADG13134.1| exsB protein [Methanocaldococcus infernus ME]
          Length = 232

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 12/78 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V  +SGG+DS+V     K  GYD++ +T             G   A +++  A+++ 
Sbjct: 1  MKAVSILSGGLDSTVATMYAKALGYDLLAIT----------YNYGQRAAKREIEAAKKIS 50

Query: 81 DTINVSHYVF--DYEERF 96
          + + + H V   ++ + F
Sbjct: 51 EILKIEHKVVELNFVKEF 68


>gi|225174317|ref|ZP_03728316.1| NAD+ synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225170102|gb|EEG78897.1| NAD+ synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 270

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + V+ +SGG DSSV AAL        +V GV +                  +D+  A  +
Sbjct: 30 KAVIGISGGKDSSVTAALCVEALGNKNVYGVLM-------------PDGIQKDIGYAYEI 76

Query: 80 CDTINVSHYVF 90
          C  +++ H V 
Sbjct: 77 CTHLDIPHAVM 87


>gi|313113047|ref|ZP_07798684.1| argininosuccinate synthase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624639|gb|EFQ07957.1| argininosuccinate synthase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 470

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +     G    G ++       
Sbjct: 67  KKVVLAYSGGLDTSIIIPWLKE-----------NYNNCEVVAVSGDVGQGTELDGLEEKA 115

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
                   YV D ++ F    I P          Y  G +   PC+          L  +
Sbjct: 116 KATGASKLYVLDLKKDFVENYIFPTLKFGAKYEDYLLGTSFARPCIA-------KALADI 168

Query: 133 TRQLGADVLATG 144
             + GAD +  G
Sbjct: 169 AIKEGADAICHG 180


>gi|295104520|emb|CBL02064.1| argininosuccinate synthase [Faecalibacterium prausnitzii SL3/3]
          Length = 410

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +     G    G ++       
Sbjct: 7   KKVVLAYSGGLDTSIIIPWLKE-----------NYNNCEVVAVSGDVGQGTELDGLEEKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
                   YV D ++ F    I P          Y  G +   PC+          L  +
Sbjct: 56  KATGASKLYVLDLKKDFVENYIFPTLKFGAKYEDYLLGTSFARPCIA-------KALADI 108

Query: 133 TRQLGADVLATG 144
             + GAD +  G
Sbjct: 109 AIKEGADAICHG 120


>gi|257437652|ref|ZP_05613407.1| argininosuccinate synthase [Faecalibacterium prausnitzii A2-165]
 gi|257199959|gb|EEU98243.1| argininosuccinate synthase [Faecalibacterium prausnitzii A2-165]
          Length = 411

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +     G    G ++       
Sbjct: 7   KKVVLAYSGGLDTSIIIPWLKE-----------NYNNCEVVAVSGDVGQGTELDGLEEKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
                   YV D ++ F    I P          Y  G +   PC+          L  +
Sbjct: 56  KATGASKLYVLDLKKDFVENYIFPTLKFGAKYEDYLLGTSFARPCIA-------KALADI 108

Query: 133 TRQLGADVLATG 144
             + GAD +  G
Sbjct: 109 AIKEGADAICHG 120


>gi|241762674|ref|ZP_04760743.1| GMP synthase, small subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372724|gb|EER62451.1| GMP synthase, small subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 341

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D RV+  +SGGVDSSV A L+    G  +  V            R+G      
Sbjct: 221 EIRKQVGDGRVICGLSGGVDSSVTAVLVHEAIGDQLTCVF-----VDHGLMRQGEAEQVV 275

Query: 72  DVYDARRVCDTINVSHYVFDYEERF 96
            ++      +   +     + E+RF
Sbjct: 276 SLFR-----EHYGIKLVHVNAEDRF 295


>gi|160944990|ref|ZP_02092216.1| hypothetical protein FAEPRAM212_02505 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442721|gb|EDP19726.1| hypothetical protein FAEPRAM212_02505 [Faecalibacterium prausnitzii
           M21/2]
          Length = 410

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +     G    G ++       
Sbjct: 7   KKVVLAYSGGLDTSIIIPWLKE-----------NYNNCEVVAVSGDVGQGTELDGLEEKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
                   YV D ++ F    I P          Y  G +   PC+          L  +
Sbjct: 56  KATGASKLYVLDLKKDFVENYIFPTLKFGAKYEDYLLGTSFARPCIA-------KALADI 108

Query: 133 TRQLGADVLATG 144
             + GAD +  G
Sbjct: 109 AIKEGADAICHG 120


>gi|126665050|ref|ZP_01736033.1| argininosuccinate synthase [Marinobacter sp. ELB17]
 gi|126630420|gb|EBA01035.1| argininosuccinate synthase [Marinobacter sp. ELB17]
          Length = 403

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+   G +V+  T                  G++V  AR   
Sbjct: 6   KVVLAYSGGLDTSVIVRWLQDTYGCEVVTFT-------------ADIGQGEEVEPARVKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V   Y+ D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  KALGVKEIYIEDLREEFVRDYVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
               GAD ++ G
Sbjct: 107 ANSTGADAISHG 118


>gi|120436574|ref|YP_862260.1| GMP synthase [Gramella forsetii KT0803]
 gi|226739625|sp|A0M3J8|GUAA_GRAFK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|117578724|emb|CAL67193.1| GMP synthase [Gramella forsetii KT0803]
          Length = 509

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           L   +L +   D +VV+ +SGGVDS+V A LL + 
Sbjct: 202 LTVSELKEKVGDDKVVLGLSGGVDSTVAAVLLHKA 236


>gi|16081948|ref|NP_394358.1| NAD synthetase [Thermoplasma acidophilum DSM 1728]
 gi|25090797|sp|Q9HJR8|NADE_THEAC RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|10640176|emb|CAC12028.1| NAD(+) synthase related protein [Thermoplasma acidophilum]
          Length = 241

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 28/103 (27%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKG 65
           S  L K  +    V+ +SGG+DSSV  ALL     K     +I V +             
Sbjct: 12  SEFLRKVLQGKNAVIGISGGIDSSVTLALLTRSIPKER---IIPVFM-----------PD 57

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108
                 D  D +++   + +          +R   I P   S+
Sbjct: 58  RNTQQADYDDVQKLTQKLGL---------TYREVRIDPMVDSF 91


>gi|271962728|ref|YP_003336924.1| GMP synthase C terminal domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270505903|gb|ACZ84181.1| GMP synthase C terminal domain protein [Streptosporangium roseum
           DSM 43021]
          Length = 523

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R + A+SGGVDS+V AA+++R  G  +  V            RKG     +   D   
Sbjct: 223 EGRAICALSGGVDSAVAAAMVQRAIGDRLTCVF-----VDHGLLRKGEAEQVE--RDFVA 275

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V     V   V D +ERF  A           G T     +  R +   + + V      
Sbjct: 276 VT---GVKLRVVDAQERFLKA---------LDGVT---DPEEKRKIIGREFIRVFEDEQR 320

Query: 139 DVLATG---HYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            ++A G     ++  LY    + G             +            Q   L  PL 
Sbjct: 321 AIIADGPVDFLVQGTLYPDVVESGGG-----TGTANIKSHHNVGGLPDDLQFS-LVEPLR 374

Query: 194 DMKKESVRDLAREMGLDIA 212
            + K+ VR    E+GL  A
Sbjct: 375 ALFKDEVRRAGEELGLPAA 393


>gi|229917716|ref|YP_002886362.1| exsB protein [Exiguobacterium sp. AT1b]
 gi|259551529|sp|C4L0V4|QUEC_EXISA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|229469145|gb|ACQ70917.1| exsB protein [Exiguobacterium sp. AT1b]
          Length = 214

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +V  SGG DS+      K+    V  VT        A            +  A+ +  
Sbjct: 5   KALVVFSGGQDSTTCLFWAKQQFSHVEAVTFAYGQRHDAE-----------IEVAKEIAA 53

Query: 82  TINVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++V H++ D     +   NA+           + P   VD    +  S    + +QLG 
Sbjct: 54  ELDVPHHILDLSLLGQLTSNALTRHDLD-IDNADVPNTFVDGRNHLFLSFAAVMAKQLGM 112

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR   ++        A     + D   PL  + K+
Sbjct: 113 HHIVTG-------VCETDFSGYPD-CRDQFIKSLNVTLNLAMDYPFVIDT--PLMWLDKK 162

Query: 199 SVRDLAREMG 208
               LA E+G
Sbjct: 163 ETWALADELG 172


>gi|212692103|ref|ZP_03300231.1| hypothetical protein BACDOR_01598 [Bacteroides dorei DSM 17855]
 gi|237709042|ref|ZP_04539523.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 9_1_42FAA]
 gi|237724623|ref|ZP_04555104.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. D4]
 gi|265755531|ref|ZP_06090152.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_33FAA]
 gi|212665495|gb|EEB26067.1| hypothetical protein BACDOR_01598 [Bacteroides dorei DSM 17855]
 gi|229436818|gb|EEO46895.1| glutaminne-hydrolyzing GMP synthase [Bacteroides dorei 5_1_36/D4]
 gi|229457104|gb|EEO62825.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 9_1_42FAA]
 gi|263234137|gb|EEZ19730.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_33FAA]
          Length = 517

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + +VV+ +SGGVDSSV A LL +  G ++  + 
Sbjct: 213 NDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF 245


>gi|116071887|ref|ZP_01469155.1| ExsB [Synechococcus sp. BL107]
 gi|116065510|gb|EAU71268.1| ExsB [Synechococcus sp. BL107]
          Length = 226

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          +  +SGG+DS+  AAL +  G  VIG+          S   G     +++  A +V   +
Sbjct: 7  IALLSGGLDSATAAALAQESGDRVIGL----------SFDYGQ-RHRRELKAAAKVAAHL 55

Query: 84 NV-SHYVFD 91
          N+  H+  D
Sbjct: 56 NLAEHHQVD 64


>gi|330813890|ref|YP_004358129.1| Glutamine-hydrolyzing GMP synthase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486985|gb|AEA81390.1| Glutamine-hydrolyzing GMP synthase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 281

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
            ++ K     +V+ A+SGGVDSSV+A +LK+ 
Sbjct: 213 FEIKKTVGKKKVLCALSGGVDSSVLAHILKKA 244


>gi|312127332|ref|YP_003992206.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777351|gb|ADQ06837.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 289

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 85/241 (35%), Gaps = 46/241 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LLK   +DV+G          A          ++  DA ++   
Sbjct: 45  VLVAFSGGVDST---FLLKVS-FDVLG------EKAIAVFSSSVLSPQREKEDAAKLAKD 94

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I     V +  + F N     F          L C  C + +    L  +  +L  + + 
Sbjct: 95  IGARLIVIE-RDVFSN---EDFMK-----NDRLRCYYCKKDL-IKRLKVLKEELNLNEIV 144

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          DD +  R   +  + E  +S  +                 + KE +R 
Sbjct: 145 EG-------SNIDDLQDFRPGRKAFEEEGIKSPLVET--------------GLTKEEIRY 183

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNG--QILGRHNGI 259
           L++E GL    K  S   C V +  Y D +       I    D +   G  Q+  RH+G 
Sbjct: 184 LSKEFGLSTYQKHSS--ACLVTRIPYGDEITLEKLQMIEKAEDFLVQKGFSQVRVRHHGA 241

Query: 260 I 260
           I
Sbjct: 242 I 242


>gi|309775951|ref|ZP_07670943.1| putative NAD synthase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916233|gb|EFP61981.1| putative NAD synthase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 549

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 3   VSEATRLNSLDLDKNPKDMRV--VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRK 59
           + +A  +   D D      RV  +V MSGG+DSSV AALL    G +      ++Y    
Sbjct: 228 LLDALLMGIRDFDSQVFGGRVPWIVGMSGGLDSSVTAALLCAALGKE------RVYGYNI 281

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHY 88
           A++   S      + +A +    + + HY
Sbjct: 282 ATQHNSSTT----ISNAAKEAQALGI-HY 305


>gi|319762648|ref|YP_004126585.1| gmp synthase, large subunit [Alicycliphilus denitrificans BC]
 gi|330824738|ref|YP_004388041.1| GMP synthase, large subunit [Alicycliphilus denitrificans K601]
 gi|317117209|gb|ADU99697.1| GMP synthase, large subunit [Alicycliphilus denitrificans BC]
 gi|329310110|gb|AEB84525.1| GMP synthase, large subunit [Alicycliphilus denitrificans K601]
          Length = 538

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 66/207 (31%), Gaps = 54/207 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L                      
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMFEG---------- 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 ++      D  E F +       +  +  E         R +     + V +  
Sbjct: 279 -----KLHAKVIRVDASELFLSK-----LAGVSEPEQK-------RKIIGGLFVDVFKAE 321

Query: 137 ------------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                       GA  LA G      +  G    ++ +  +           +     +Q
Sbjct: 322 AAKLKAAGGGHKGATFLAQGTIYPDVIESGGAKSKKAVTIKSHHN-------VGGLP-EQ 373

Query: 185 LC-DLRFPLGDMKKESVRDLAREMGLD 210
           L   L  PL D+ K+ VR+L   +GL 
Sbjct: 374 LGLKLLEPLRDLFKDEVRELGVALGLP 400


>gi|237713442|ref|ZP_04543923.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407229|ref|ZP_06083777.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_22]
 gi|294647335|ref|ZP_06724928.1| PP-loop family protein [Bacteroides ovatus SD CC 2a]
 gi|294809044|ref|ZP_06767766.1| PP-loop family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446424|gb|EEO52215.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354037|gb|EEZ03129.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_22]
 gi|292637294|gb|EFF55719.1| PP-loop family protein [Bacteroides ovatus SD CC 2a]
 gi|294443769|gb|EFG12514.1| PP-loop family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 248

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRD-----GYDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL KR       + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGKRARIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+   V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCEAYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|150006078|ref|YP_001300822.1| GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254883446|ref|ZP_05256156.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 4_3_47FAA]
 gi|294775257|ref|ZP_06740780.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|319641767|ref|ZP_07996448.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_40A]
 gi|226738388|sp|A6L686|GUAA_BACV8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149934502|gb|ABR41200.1| glutaminne-hydrolyzing GMP synthase [Bacteroides vulgatus ATCC
           8482]
 gi|254836239|gb|EET16548.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 4_3_47FAA]
 gi|294450834|gb|EFG19311.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|317386601|gb|EFV67499.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_40A]
          Length = 517

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + +VV+ +SGGVDSSV A LL +  G ++  + 
Sbjct: 213 NDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF 245


>gi|315281840|ref|ZP_07870382.1| GMP synthase (glutamine-hydrolyzing) [Listeria marthii FSL S4-120]
 gi|313614515|gb|EFR88117.1| GMP synthase (glutamine-hydrolyzing) [Listeria marthii FSL S4-120]
          Length = 394

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|304390896|ref|ZP_07372848.1| exopolyphosphatase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304325779|gb|EFL93025.1| exopolyphosphatase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 528

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 66/218 (30%), Gaps = 57/218 (26%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+  +SGGVDSSV AAL+ +  G  +  +                    +
Sbjct: 216 EIRQRVGDAQVICGLSGGVDSSVAAALVHKAIGDQLTCIF--------VDHGLLRAGERE 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERF------------RNAVIVP-FASSYAAG--ETPLP 116
            V   R     + +     D   RF            +  +I   F  S+ A   E    
Sbjct: 268 QVE--RDYAANMGIRVKSVDESARFLGALAGVSEPEQKRKIIGREFIRSFEAAQREVVAE 325

Query: 117 CVDCNRTVKF---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
                  VKF     L   V    G    A      +   + +D K              
Sbjct: 326 IGASGGEVKFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLKFE------------ 373

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                          L  PL  + K+ VR L RE+GL 
Sbjct: 374 ---------------LIEPLRKLFKDEVRALGRELGLP 396


>gi|300728215|ref|ZP_07061583.1| GMP synthase [Prevotella bryantii B14]
 gi|299774450|gb|EFI71074.1| GMP synthase [Prevotella bryantii B14]
          Length = 514

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            L +   + RV++ +SGGVDSSV A LL +  G ++  +     +               
Sbjct: 206 QLKEQVGNDRVILGLSGGVDSSVCATLLNKAIGKNLTCIF---VDHGM--------LRKD 254

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +        + + ++    D  E+F              G T     +  R +   D + 
Sbjct: 255 EFKKVMEAYNGLGLNVIGVDASEKFFKD---------LEGVT---DPEQKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  E+G+ 
Sbjct: 349 EMHLQLCEPLKWLFKDEVRRVGYELGMP 376


>gi|296445479|ref|ZP_06887436.1| argininosuccinate synthase [Methylosinus trichosporium OB3b]
 gi|296257045|gb|EFH04115.1| argininosuccinate synthase [Methylosinus trichosporium OB3b]
          Length = 414

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 31/143 (21%)

Query: 14  LDKNPKD-MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + +  KD  RVV+A SGG+D+S++   L+   G +V+  T                  G+
Sbjct: 1   MSRQKKDIKRVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGE 47

Query: 72  DVYDARRVCDTINV-SHYVF--DYEERFRNAVIVPFASS-------YAAGETPLPCVDCN 121
           ++  AR   + + V   ++F  D  E F    + P   +       Y  G +    +   
Sbjct: 48  ELEPARAKAELLGVKPEHIFIEDLREEFVRDFVFPMFRANAQYEGLYLLGTSIARPLIAK 107

Query: 122 RTVKFSDLLSVTRQLGADVLATG 144
           + +       + R+LGAD +  G
Sbjct: 108 KQI------EIARKLGADAVCHG 124


>gi|225012685|ref|ZP_03703120.1| GMP synthase, large subunit [Flavobacteria bacterium MS024-2A]
 gi|225003218|gb|EEG41193.1| GMP synthase, large subunit [Flavobacteria bacterium MS024-2A]
          Length = 509

 Score = 49.8 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD 43
           +V++ +SGGVDSSV A LL + 
Sbjct: 215 KVILGLSGGVDSSVAAMLLHKA 236


>gi|281412254|ref|YP_003346333.1| PP-loop domain protein [Thermotoga naphthophila RKU-10]
 gi|281373357|gb|ADA66919.1| PP-loop domain protein [Thermotoga naphthophila RKU-10]
          Length = 304

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 22/134 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ ++++A+SGG DS V    +LK+ G++V  + ++       + + G     Q++    
Sbjct: 46  RNSKILIAVSGGKDS-VSLWHMLKKLGHEVDALFIR-------AGKSGMVQKAQEI--VE 95

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +  + +N   ++ D  E F       I              P       V+   +     
Sbjct: 96  KNAELLNTKLHIVDATEYFGGLSTQEIAIMLRR--------PVCSICGVVRRYLMNKFAY 147

Query: 135 QLGADVLATGHYIR 148
           + G +V+ TGH + 
Sbjct: 148 ENGYNVVVTGHNLN 161


>gi|255038959|ref|YP_003089580.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053]
 gi|254951715|gb|ACT96415.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053]
          Length = 444

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 61/199 (30%), Gaps = 45/199 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA--RRVCD 81
           ++A+SGG+DS V+  L    G            +  A    G      +  +A  R +  
Sbjct: 22  LLAVSGGIDSVVMVHLFHEQG----------LPAGIAHCNFGLRGEESNADEAFVRALAA 71

Query: 82  TINVSHYVFD-YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             N   +V D   + F         S+  A           R +++     + R  G   
Sbjct: 72  RCNFPVFVSDPDVKTFSK---SHSISTQMAA----------RELRYEWFEEIRRSSGYGW 118

Query: 141 LATGHYIRSRLYV----GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           +AT H+    L         G     MC  +   RD               L  PL    
Sbjct: 119 IATAHHSNDSLETLLLNLARGTGLPGMC-GIAPVRD--------------HLIRPLILSN 163

Query: 197 KESVRDLAREMGLDIADKS 215
           +  VR  A E G+   +  
Sbjct: 164 RAEVRRYAEENGITWREDR 182


>gi|33862127|ref|NP_893688.1| hypothetical protein PMM1571 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634345|emb|CAE20030.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 274

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 49/197 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V VA SGGVDS++VA+L     G   I +T                 A   + +A+    
Sbjct: 29  VCVAYSGGVDSTLVASLAFEQLGSKAIAIT-----------GVSPALAKTLLEEAKTQAR 77

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADV 140
            I + H   +  E  +        SSY+       C  C + + K +  L  +++L   +
Sbjct: 78  WIGIQHLEIETSELDQ--------SSYSK-NPKNRCFACKKELHKHTTFL--SKKLNYKI 126

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG--DMKKE 198
           +  G      + + D    R  +    +                   +  PL      K+
Sbjct: 127 VCDG------VNLDDLDDYRPGIKAAKEAG-----------------VLSPLALFKFTKK 163

Query: 199 SVRDLAREMGLDIADKS 215
            +RD++R +G    DK 
Sbjct: 164 DIRDISRALGFPWWDKP 180


>gi|262306027|gb|ACY45606.1| gln amidotransferase [Craterostigmus tasmanianus]
          Length = 197

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AALL +      VI + +          RK      ++     
Sbjct: 43  DNKVLMLVSGGVDSTVCAALLHKALKKDQVIALHIDN-----GFMRKSETLQVKESL--- 94

Query: 78  RVCDTINVSHYVFDYEERFRNAV 100
              + + +   +      F NAV
Sbjct: 95  ---EKLGLKLKIVRASHTFFNAV 114


>gi|103486841|ref|YP_616402.1| ExsB [Sphingopyxis alaskensis RB2256]
 gi|98976918|gb|ABF53069.1| ExsB [Sphingopyxis alaskensis RB2256]
          Length = 227

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               V+V +SGG+DS V A L +  G  ++ +T+        ++R        ++  A R
Sbjct: 5   SGKTVIVLLSGGLDSMVCAGLAREAGARIVALTI------DYNQR-----HRVELESAAR 53

Query: 79  VCDTINVSHYVF---DYEERFRNAVIVPFASSYAAG-ETPLPC-VDCNRTVKFSDL---L 130
           +   +  + ++    D   RF  + +         G  T +P      R + F  L   L
Sbjct: 54  IAAHVGAAEHIVLPLDLR-RFGGSALTADIDVPKDGVGTDIPVTYVPARNLIFLSLTLGL 112

Query: 131 SVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +  RQ     +G + L    Y   R       ++   +        DQ            
Sbjct: 113 AEARQAADIVIGVNALDYSGYPDCRPAFIQGFEKLAALATRDG---DQGVRF-------- 161

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIA 212
             +  PL  M K  +   A  +G+D A
Sbjct: 162 -HIHAPLQHMTKADIAAEAARLGMDAA 187


>gi|117926371|ref|YP_866988.1| ExsB family protein [Magnetococcus sp. MC-1]
 gi|117610127|gb|ABK45582.1| ExsB family protein [Magnetococcus sp. MC-1]
          Length = 382

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGGVDSS VA    R G   + V L   +NS  +            V +  ++   
Sbjct: 72  IMGLSGGVDSSYVAWQAHRLGLRPLAVHLDNGWNSELS------------VQNIEQIVTR 119

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N+  Y         NA       +Y         V  +  + F+ L  +  + G   + 
Sbjct: 120 LNMDLYT---HVLDWNA-FRDLQRAYLKASVIDIEVITDHAI-FALLYRIAGKKGIKHIL 174

Query: 143 TG 144
           +G
Sbjct: 175 SG 176


>gi|327313700|ref|YP_004329137.1| GMP synthase [Prevotella denticola F0289]
 gi|326945198|gb|AEA21083.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella denticola F0289]
          Length = 537

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L     + RV++ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 229 ELRGQVGNDRVILGLSGGVDSSVCAVLLNKAIGKNLTCIF---VDHGMLRKNE------- 278

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                 +    + ++    D  E+F              G T     +  R +   D + 
Sbjct: 279 -FAKVMKAYKGLGLNVTGVDASEKFFKD---------LEGVT---DPEQKRKIIGRDFVE 325

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     R++  A  LA        I S    G   K                  +     
Sbjct: 326 VFNAEARKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPD 371

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  ++ + 
Sbjct: 372 EMRLRLCEPLRWLFKDEVRRVGHQLEMP 399


>gi|291458888|ref|ZP_06598278.1| argininosuccinate synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418142|gb|EFE91861.1| argininosuccinate synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 417

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 14  LDKNP-KDMRVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCA 69
           + KN  +  +VV+A SGG+D    A +  LK + GY+VI V     +  +  +  G    
Sbjct: 5   MPKNKTQGEKVVLAYSGGLD--TTAIIPWLKENFGYEVICV---CVDVGQGEELDGLSER 59

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD- 128
            +    A+          Y+ D  + F    ++P   + A  E              +  
Sbjct: 60  AKLSGAAK---------LYIEDISDDFCENYVLPCIRANACYENKYLLGTAMARPAIAKR 110

Query: 129 LLSVTRQLGADVLATG 144
           L+ + R+ GA  +  G
Sbjct: 111 LVEIARKEGAKAICHG 126


>gi|227500613|ref|ZP_03930662.1| PP-loop family ATPase [Anaerococcus tetradius ATCC 35098]
 gi|227217200|gb|EEI82544.1| PP-loop family ATPase [Anaerococcus tetradius ATCC 35098]
          Length = 269

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 28/147 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGS 66
           +     +  +V VA+SGG DS ++A L++         +DV  +++          ++  
Sbjct: 28  EFSLINEGDKVAVAISGGKDSLILAKLIEELHKHSKVKFDVAYISM-----DPGYDKENR 82

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               +++         +N+   ++D      + V    A +   G    PC  C   ++ 
Sbjct: 83  ELLEENIKY-------LNIDATIYD------SEVFE-VAETITKG--AYPCYMC-ARMRR 125

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             L +  ++LG + LA GH++   +  
Sbjct: 126 GFLYNKAKELGCNKLALGHHMNDAIET 152


>gi|281358067|ref|ZP_06244551.1| argininosuccinate synthase [Victivallis vadensis ATCC BAA-548]
 gi|281315440|gb|EFA99469.1| argininosuccinate synthase [Victivallis vadensis ATCC BAA-548]
          Length = 398

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+V+VA SGG+D+SV+   +K     +VIG       +    + + +    + +      
Sbjct: 1   MKVIVAYSGGLDTSVIVKWVKEKYNAEVIGFC-----ADVGQEEELNGVEAKAIRTGATK 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLG 137
           C       YV D  E F    I P   + A  E     +  +  R +    L+ + R  G
Sbjct: 56  C-------YVEDLNEEFARDFIFPMMQANAIYE-GNYLLGTSIARPLIGKRLIEIARAEG 107

Query: 138 ADVLATG 144
           AD +  G
Sbjct: 108 ADAICHG 114


>gi|320335722|ref|YP_004172433.1| exsB protein [Deinococcus maricopensis DSM 21211]
 gi|319757011|gb|ADV68768.1| exsB protein [Deinococcus maricopensis DSM 21211]
          Length = 230

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV +SGG+DSS   A+ ++DGY V  ++ +                  ++  A  +  
Sbjct: 3  KAVVLLSGGLDSSTTLAIAQQDGYAVTALSFRY-----------GQRHTVELERAAHIAA 51

Query: 82 TINVSHYVFD 91
               H V D
Sbjct: 52 HFGADHRVID 61


>gi|291294752|ref|YP_003506150.1| asparagine synthase (glutamine-hydrolyzing) [Meiothermus ruber DSM
           1279]
 gi|290469711|gb|ADD27130.1| asparagine synthase (glutamine-hydrolyzing) [Meiothermus ruber DSM
           1279]
          Length = 611

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            V++SGG+DSS+VAAL  +    V+G     Y   +A + +G          AR +    
Sbjct: 272 AVSLSGGLDSSLVAALAAQQHERVVGF---CYGHPQAPRSEGPL--------ARELAQKA 320

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
            +  +   + E  +  ++  F  + AA + P P
Sbjct: 321 GIDVHFV-WPELSKEHLVQAFEKTLAAQDAPFP 352


>gi|118781795|ref|XP_311863.3| AGAP003015-PA [Anopheles gambiae str. PEST]
 gi|189030949|sp|Q7PR38|ASSY_ANOGA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116129261|gb|EAA07894.4| AGAP003015-PA [Anopheles gambiae str. PEST]
          Length = 424

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S +   L    Y+VI   +                  +D   AR    
Sbjct: 5   KVLLAYSGGLDTSCILKWLLEQDYEVI-CFMA------------DVGQTEDFAAAREKAL 51

Query: 82  TINVSHYVF-DYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
            I  +  V  D ++ F    + P           Y  G +   PC+          L+ V
Sbjct: 52  KIGAADVVVKDMKDFFVEKFVWPAVQMGLIYEDRYLLGTSLARPCIS-------KGLMDV 104

Query: 133 TRQLGADVLATG 144
             Q G   ++ G
Sbjct: 105 AVQRGCSYISHG 116


>gi|308182502|ref|YP_003926629.1| NAD synthetase [Helicobacter pylori PeCan4]
 gi|308064687|gb|ADO06579.1| NAD synthetase [Helicobacter pylori PeCan4]
          Length = 260

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 46/218 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DARRV 79
            +VV  +SGG+DS+VV  L +           +++     +    S  +  +   DA  +
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQ-----------KVFKENAHALLMPSLVSMPESKTDALNL 74

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+T ++ +  +       +A+        +       C      ++ + L   + +    
Sbjct: 75  CETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK---- 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                      L +G   K  R++              + T    L     P+G++ K  
Sbjct: 125 --------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTE 163

Query: 200 VRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
           V +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 164 VYELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|282890463|ref|ZP_06298986.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499460|gb|EFB41756.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 247

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 42/136 (30%)

Query: 22  RVVVAMSGGVDSSVVAALLKR---DGY--------DVIGVTLQLYNSRKASKRKGSCCAG 70
           ++ +A+SGG DS  +  LLK     G+         V G                SC AG
Sbjct: 37  KIAIALSGGKDSLALLFLLKAISGRGFPPFELFAVHVHGAF--------------SCGAG 82

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            ++   R +C  + +   + +  +   +                L C  C+R  +   L 
Sbjct: 83  VNLDYLRAICTRLEIPFLMRESTQTLES----------------LECYGCSRERR-RLLF 125

Query: 131 SVTRQLGADVLATGHY 146
              + +GA  +A GH+
Sbjct: 126 EAAKSVGATTIAFGHH 141


>gi|260436436|ref|ZP_05790406.1| ExsB protein [Synechococcus sp. WH 8109]
 gi|260414310|gb|EEX07606.1| ExsB protein [Synechococcus sp. WH 8109]
          Length = 226

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          +  +SGG+DS+  AAL    G  VIG+          S   G     +++  A  + + +
Sbjct: 7  IALLSGGLDSATAAALALEQGDRVIGL----------SFDYGQ-RHRRELDAAAAIAEQL 55

Query: 84 NV-SHYVF 90
           +  H+  
Sbjct: 56 GLAEHHCI 63


>gi|257462948|ref|ZP_05627353.1| GMP synthase [Fusobacterium sp. D12]
 gi|317060567|ref|ZP_07925052.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D12]
 gi|313686243|gb|EFS23078.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D12]
          Length = 512

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 70/214 (32%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT--------------LQLYNSRKASKRK 64
           D +V++ +SGGVDSSV A L+ +  G  +  +               +++Y+       K
Sbjct: 215 DKKVILGLSGGVDSSVAATLIHKAIGDQLTCIFVDTGLLRKNEAKTVMEVYSEHFHMNIK 274

Query: 65  GSCCAGQDVYDARRVCD------TINVSH-YVFDYE-ERFRNAVIVPFASSYAAGETPLP 116
                 + +   + V D       I      VF+ E ++F +       + + A  T  P
Sbjct: 275 CVNAEERFLSKLKGVSDPEQKRKIIGKEFIEVFNEEAKKFED-------AEFLAQGTIYP 327

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
            V  + +VK                  G  +  + +                        
Sbjct: 328 DVIESVSVK------------------GPSVTIKSHHN---------------------- 347

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +     L  PL ++ K+ VR++ R++G+ 
Sbjct: 348 VGGLPEDMKFQLLEPLRELFKDEVREVGRQLGIP 381


>gi|255932933|ref|XP_002557937.1| Pc12g11190 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582556|emb|CAP80746.1| Pc12g11190 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V +A SGG+D+S +   L  +GY+V+   +                  +D   AR  
Sbjct: 3   QGKVCLAYSGGLDTSCILKYLIEEGYEVV-CFMA------------DVGQEEDFEAAREK 49

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              I  +   + D    F   +  P  +  A  E          R V     + V ++ G
Sbjct: 50  ALKIGALKCEIIDIRREFIEELCFPAIACNAVYEDVYLLGTSLARPVIARAQIDVAKREG 109

Query: 138 ADVLATG 144
              ++ G
Sbjct: 110 CFAVSHG 116


>gi|332025647|gb|EGI65809.1| GMP synthase [Acromyrmex echinatior]
          Length = 716

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 8/40 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQL 54
           D +V++ +SGGVDS+V AALL     K     VI + +  
Sbjct: 238 DKKVLLLVSGGVDSTVCAALLQKALSKEQ---VIALHINN 274


>gi|328854886|gb|EGG04016.1| hypothetical protein MELLADRAFT_117187 [Melampsora larici-populina
           98AG31]
          Length = 553

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 44/208 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V+ A+SGGVDSSV A L+    G+    + +     R     +      +D      
Sbjct: 241 EDHVIGAVSGGVDSSVAAKLMNEAIGHRFHAIMVDNGLLRMNEADQVHKMLNED------ 294

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
               + V+  V D  + F          +    E P     +  N  +      +   ++
Sbjct: 295 ----LGVNLTVVDATDTF--------LDALKGIEDPEAKRKIIGNTFINV--FEAKAEEI 340

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMD--------LERDQSYF------LFATTQ 182
             +       ++ +    D   R + + +             +  S        +     
Sbjct: 341 DVE-------LQKQAGSQDSQNRIKYLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLD 393

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL ++ K+ VR L R + + 
Sbjct: 394 DMKLKLIEPLRELFKDEVRALGRLLNIP 421


>gi|307189324|gb|EFN73755.1| GMP synthase [glutamine-hydrolyzing] [Camponotus floridanus]
          Length = 732

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 8/40 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQL 54
           D +V++ +SGGVDS+V AALL     K     VI + +  
Sbjct: 238 DKKVLLLVSGGVDSTVCAALLQKALNKEQ---VIALHINN 274


>gi|319406422|emb|CBI80062.1| Argininosuccinate synthase [Bartonella sp. 1-1C]
          Length = 407

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 28/140 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+S++   L+   G +++  T                  G++
Sbjct: 1   MKKWKDIKKVVLAYSGGLDTSIILKWLQNELGAEIVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTV 124
           +  AR   + + V   Y+ D  E F    + P          +Y  G +    +   R  
Sbjct: 48  LELARHKAEMLGVKEIYIEDLREEFVRDFVFPMFRANTVYEGAYLLGTSIARPLISKR-- 105

Query: 125 KFSDLLSVTRQLGADVLATG 144
               L+ + ++  AD +A G
Sbjct: 106 ----LVEIAQKTNADAIAHG 121


>gi|296122432|ref|YP_003630210.1| hypothetical protein Plim_2185 [Planctomyces limnophilus DSM 3776]
 gi|296014772|gb|ADG68011.1| conserved hypothetical protein [Planctomyces limnophilus DSM 3776]
          Length = 294

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 64/196 (32%), Gaps = 43/196 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS++V+           G    L +S  A        +  D   +  V   
Sbjct: 39  VIVAYSGGVDSALVSW----------GAFQALGSSALAVTALSPSVSESDRELSAAVARE 88

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H      E           ++Y A   P  C  C      S L S  R       A
Sbjct: 89  MGIKHQTIHTHEIE--------LAAYRA-NAPTRCYFCK-----STLYSTIRSK---YPA 131

Query: 143 TGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +   +       DD G  R  +    +               Q+      LG   K+ VR
Sbjct: 132 SEFPLIVNGTNLDDLGDHRPGLMAAEEF--------------QIRSPLVELG-YNKQIVR 176

Query: 202 DLAREMGLDIADKSDS 217
           +LA   GL + D+  S
Sbjct: 177 NLAHLAGLTVHDRPAS 192


>gi|317129945|ref|YP_004096227.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474893|gb|ADU31496.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 402

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 37/189 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ +SGG+DS V   L  + G ++  +          S    +  A Q V D  RV  
Sbjct: 180 KVLLMLSGGIDSPVAGYLALKRGVELEAIHFH-------SPPFTNDRARQKVEDLTRVLT 232

Query: 82  TIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                +  ++             PF  +  A    +P       ++   +L +       
Sbjct: 233 RFGGHIKLHII------------PFTEAQKAIHQQIPDSYEMTVMR-RFMLRIAEG---- 275

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A   +  + +     G+        M    D    +          +  PL  M K  
Sbjct: 276 -VAKKKHALAIVNGESLGQVASQTLDSMHTIND----VTNLP------VLRPLVTMDKLE 324

Query: 200 VRDLAREMG 208
           V ++A+++G
Sbjct: 325 VIEIAKKIG 333


>gi|323527176|ref|YP_004229329.1| argininosuccinate synthase [Burkholderia sp. CCGE1001]
 gi|323384178|gb|ADX56269.1| argininosuccinate synthase [Burkholderia sp. CCGE1001]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             Y++   +        G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQD-----------NYDAEVVT-FTADIGQGEELEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQLGIKQENIFIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GA  ++ G
Sbjct: 107 EIARATGAQAVSHG 120


>gi|241889865|ref|ZP_04777163.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           haemolysans ATCC 10379]
 gi|241863487|gb|EER67871.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           haemolysans ATCC 10379]
          Length = 416

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 33/187 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + ++ +SGG+DS V A  L+  G +V    +  + S   +  +             +V  
Sbjct: 180 KALLLLSGGIDSPVAAHTLQVKGVEVE---MIHFQSPPFTSAEALQKIFDLTIKLSQVVG 236

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +  +V ++ +  +  ++    S+Y    T        R         V ++ G   +
Sbjct: 237 R--IKLHVVNFTKL-QTEIVKRVPSNYTMTST--------RRFMLRIAEEVAKKEGCLAI 285

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATG  +         G+        M+   +    +          +  PL  M K  + 
Sbjct: 286 ATGESL---------GQVASQTLESMNCINE----VTNLP------VLRPLLTMDKVDII 326

Query: 202 DLAREMG 208
            +A+E+ 
Sbjct: 327 KIAQEID 333


>gi|170693516|ref|ZP_02884675.1| Argininosuccinate synthase [Burkholderia graminis C4D1M]
 gi|170141671|gb|EDT09840.1| Argininosuccinate synthase [Burkholderia graminis C4D1M]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             Y++   +        G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQD-----------NYDAEVVT-FTADIGQGEELEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQLGIKQDNIFIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GA  ++ G
Sbjct: 107 EIARATGAQAVSHG 120


>gi|18976586|ref|NP_577943.1| n-type ATP pyrophosphatase [Pyrococcus furiosus DSM 3638]
 gi|18892149|gb|AAL80338.1| n-type ATP pyrophosphatase [Pyrococcus furiosus DSM 3638]
          Length = 246

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 25/137 (18%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           RL  + +++   + +V VA SGG DSS    +L   G+ V  +T +L   R    ++   
Sbjct: 43  RLKGIKIEEKELNSKVAVAFSGGSDSSATYKILAWAGFKVYPITAKLPQMRDEVLKRLES 102

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                V           +  Y+          V+           T   C  C+  V   
Sbjct: 103 GGAIFVE----------IPEYM---------EVMEDLIRK----RT-AICGRCHSMV-MR 137

Query: 128 DLLSVTRQLGADVLATG 144
            +    R+LGA+++A+G
Sbjct: 138 AVEERARELGAEIVASG 154


>gi|310823103|ref|YP_003955461.1| argininosuccinate synthase [Stigmatella aurantiaca DW4/3-1]
 gi|309396175|gb|ADO73634.1| Argininosuccinate synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 396

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K P    VV+A SGG+D+S     L+  G+ V  VT                      
Sbjct: 1   MSKKP----VVLAFSGGLDTSFCVVYLREQGHAVTTVT------VDTGGFSADALKRMPE 50

Query: 74  YDAR--RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLL 130
             AR   V       H+  D      N  +    +         P  V   R  + ++++
Sbjct: 51  QSARLGAVA------HHTVDGRALLFNDYLRYLLAGNVLRGQAYPLSVSAERVCQATEVV 104

Query: 131 SVTRQLGADVLATG 144
            + R++GA  LA G
Sbjct: 105 RMAREVGAQALAHG 118


>gi|307730812|ref|YP_003908036.1| argininosuccinate synthase [Burkholderia sp. CCGE1003]
 gi|307585347|gb|ADN58745.1| argininosuccinate synthase [Burkholderia sp. CCGE1003]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             Y++   +        G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQD-----------NYDAEVVT-FTADIGQGEELEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQLGIKPENIFIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GA  ++ G
Sbjct: 107 EIARATGAQAVSHG 120


>gi|220910546|ref|YP_002485857.1| exsB protein [Cyanothece sp. PCC 7425]
 gi|254764328|sp|B8HQ99|QUEC_CYAP4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|219867157|gb|ACL47496.1| exsB protein [Cyanothece sp. PCC 7425]
          Length = 229

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 30/206 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+ +SGG+DS+ V  L +  G+D   ++       K         A           
Sbjct: 1   MKIVILLSGGLDSTTVLYLARSLGHDCYALSFNYGQRHKQELAAAIAVAQLAGV------ 54

Query: 81  DTINVSHYVFDYEERFR--NAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
               + H V  ++      +A+                A + P+  V    T+  S  LS
Sbjct: 55  ----IQHQVISFDLGLWGGSALTDYTLDLPQNRAFKEMAEQIPITYVPARNTIFLSFALS 110

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
               +GA  +  G          D        CRP  +   Q  +   T Q +      +
Sbjct: 111 YAEAIGATQVYAGMNAIDYSGYPD--------CRPDYIAAMQEVYRLGTKQGREGEPIQI 162

Query: 189 RFPLGDMKKESVRDLAREMGLDIADK 214
             PL D+ K ++  L   +G+  A  
Sbjct: 163 ITPLIDLTKPAIIQLGNRLGVPWAKT 188


>gi|225164379|ref|ZP_03726642.1| Argininosuccinate synthase [Opitutaceae bacterium TAV2]
 gi|224801011|gb|EEG19344.1| Argininosuccinate synthase [Opitutaceae bacterium TAV2]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+A SGG+D+SV+   LK   YD   VT    +  +  + KG          A++  
Sbjct: 1   MKIVLAYSGGLDTSVIVKWLKET-YDAEIVTFA-ADVGQEEELKGLDKK------AKKTG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +    HY  D  E F    I P   + A  E          R +     + + R+  AD
Sbjct: 53  AS---KHYTLDLVEEFARDFIYPMIRANAVYEGQYYLGTSIARPLIAKAQVEIARKEKAD 109

Query: 140 VLATG 144
            +A G
Sbjct: 110 TVAHG 114


>gi|187925180|ref|YP_001896822.1| argininosuccinate synthase [Burkholderia phytofirmans PsJN]
 gi|229889864|sp|B2SY63|ASSY_BURPP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|187716374|gb|ACD17598.1| Argininosuccinate synthase [Burkholderia phytofirmans PsJN]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             Y++   +        G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQD-----------NYDAEVVT-FTADIGQGEELEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQLGIKQDNIFIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GA  ++ G
Sbjct: 107 EIARATGAQAVSHG 120


>gi|319652976|ref|ZP_08007081.1| aluminum resistance protein [Bacillus sp. 2_A_57_CT2]
 gi|317395325|gb|EFV76058.1| aluminum resistance protein [Bacillus sp. 2_A_57_CT2]
          Length = 219

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ + +V  SGG DS+      K    +V  VT   YN R   K +  C        A++
Sbjct: 2  KNDKALVVFSGGQDSTTCLFWAKERFEEVEAVTF-NYNQR--HKLEIEC--------AQQ 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H++ D  
Sbjct: 51 IAKELGIRHHILDMS 65


>gi|294496272|ref|YP_003542765.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanohalophilus mahii DSM 5219]
 gi|292667271|gb|ADE37120.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanohalophilus mahii DSM 5219]
          Length = 391

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
             ++VV +SGG+DS V A LL R G  VI V          + R+ +    + + D
Sbjct: 179 QGKMVVLLSGGIDSPVAAWLLMRRGVKVIPVFCNNEPFSDEATRQKAIKCVKVLND 234


>gi|91785024|ref|YP_560230.1| argininosuccinate synthase [Burkholderia xenovorans LB400]
 gi|119361260|sp|Q13UR1|ASSY_BURXL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|91688978|gb|ABE32178.1| argininosuccinate synthase [Burkholderia xenovorans LB400]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+             Y++   +        G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQD-----------NYDAEVVT-FTADIGQGEELEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQLGIKPENIFIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GA  ++ G
Sbjct: 107 EIARATGAQAVSHG 120


>gi|41019306|gb|AAR98564.1| GntR [Micromonospora echinospora]
 gi|85814031|emb|CAF31447.1| putative gentamicin production protein [Micromonospora echinospora]
          Length = 245

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 71/236 (30%), Gaps = 36/236 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             +  R VV +SGG+DS+ V A+   +GY+   ++ +                  ++  A
Sbjct: 14  PTEKRRAVVLLSGGLDSATVLAMAVHEGYEAHALSFRY-----------GQRHTVELEAA 62

Query: 77  RRVCDTINVSHYVF---DYE-------ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
            RV   +  + +V    D              AV    ++     E P+  V    T+  
Sbjct: 63  ARVAKALGATRHVVADIDLRVFGGSALTDDTLAVPHHDSADELGDEIPVTYVPARNTIFL 122

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           S  L+    L A  +  G          D                           +Q  
Sbjct: 123 SFALAWAETLDASDIFIGVSALDYSGYPDCRPEYV----AAYETMANLATKAGVEGRQRL 178

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSD-----------SQDICFVQQGKYFDV 231
            +  PL  + K        E+G+D A               S D C ++   + ++
Sbjct: 179 RIHTPLIQLTKAETIRRGLELGVDYAWTHSCYDPVDGRACGSCDSCLLRGRGFAEL 234


>gi|332168772|gb|AEE18027.1| GMP synthase, large subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 510

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 32/202 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           DL     D RV++ +SGGVDS+V A LL +  G ++  + +                   
Sbjct: 206 DLKAKLGDDRVILGLSGGVDSTVAATLLHKAIGRNLYCIFVNN-----------GLLRKD 254

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSD 128
           +     +  + + ++    D   RF  A+             G   +   D       S 
Sbjct: 255 EYTQVLKQYEGMGLNVKGVDASARFLEALEGESDPETKRKAIGRVFVEVFDD-----ESK 309

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L+   + LG   +            G     +                +          +
Sbjct: 310 LVENAKWLGQGTIYPDVIESVSATGGPSATIKSHHN------------VGGLPDYMTLKV 357

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +   MGL 
Sbjct: 358 VEPLRMLFKDEVRRVGASMGLS 379


>gi|242399698|ref|YP_002995123.1| Putative thiamine biosynthesis protein THII [Thermococcus sibiricus
           MM 739]
 gi|242266092|gb|ACS90774.1| Putative thiamine biosynthesis protein THII [Thermococcus sibiricus
           MM 739]
          Length = 366

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
             +VV  +SGG+DS V A L+ + G +VI V  
Sbjct: 168 QGKVVALLSGGIDSPVAAFLMLKRGAEVIAVHF 200


>gi|256824629|ref|YP_003148589.1| GMP synthase (glutamine-hydrolyzing) [Kytococcus sedentarius DSM
           20547]
 gi|256688022|gb|ACV05824.1| GMP synthase (glutamine-hydrolyzing) [Kytococcus sedentarius DSM
           20547]
          Length = 527

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 66/207 (31%), Gaps = 45/207 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDAR 77
           D RV+  +SGGVDSSV AAL++R  G  +  V            R G       D  +A 
Sbjct: 218 DDRVICGLSGGVDSSVAAALVQRAVGDQLTCVF-----VDHGLLRSGEREQVENDFVEAT 272

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  V     D  ++F +A          AG T  P  +  R +   + +       
Sbjct: 273 ------GVDLVTVDATDQFLDA---------LAGVT-EP--ETKRKIIGREFIR-----S 309

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCR--------------PMDLERDQSYFLFATTQQ 183
            +  A            DD    + + +                   +            
Sbjct: 310 FEQAARDVVSGRAGEGTDDEHPVKWLVQGTLYPDVVESGGGAGTATIKSHHNVGGLPDDL 369

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
           Q   L  PL  + K+ VR + RE+G+ 
Sbjct: 370 QFG-LVEPLRMLFKDEVRAIGRELGVP 395


>gi|118574278|sp|Q1GTF3|QUEC1_SPHAL RecName: Full=7-cyano-7-deazaguanine synthase 1; AltName:
           Full=7-cyano-7-carbaguanine synthase 1; AltName:
           Full=PreQ(0) synthase 1; AltName: Full=Queuosine
           biosynthesis protein queC 1
          Length = 224

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               V+V +SGG+DS V A L +  G  ++ +T+        ++R        ++  A R
Sbjct: 2   SGKTVIVLLSGGLDSMVCAGLAREAGARIVALTI------DYNQR-----HRVELESAAR 50

Query: 79  VCDTINVSHYVF---DYEERFRNAVIVPFASSYAAG-ETPLPC-VDCNRTVKFSDL---L 130
           +   +  + ++    D   RF  + +         G  T +P      R + F  L   L
Sbjct: 51  IAAHVGAAEHIVLPLDLR-RFGGSALTADIDVPKDGVGTDIPVTYVPARNLIFLSLTLGL 109

Query: 131 SVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +  RQ     +G + L    Y   R       ++   +        DQ            
Sbjct: 110 AEARQAADIVIGVNALDYSGYPDCRPAFIQGFEKLAALATRDG---DQGVRF-------- 158

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIA 212
             +  PL  M K  +   A  +G+D A
Sbjct: 159 -HIHAPLQHMTKADIAAEAARLGMDAA 184


>gi|297526365|ref|YP_003668389.1| Thiamine biosynthesis protein-like protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255281|gb|ADI31490.1| Thiamine biosynthesis protein-like protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 375

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 40/195 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV +SGGVDSS+ A    + G  +I V +   + ++ +   +   S     +        
Sbjct: 168 VVLLSGGVDSSLAAWYALKRGTRIIPVFIDLGKYWSEQARKRFYESISLIYEWV----PW 223

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
           D   +  Y+    E     ++                   N   +   LL        A 
Sbjct: 224 DK--IKFYIVRGAE----KIVE----------------SANIPARLRCLLCKANMYRIAS 261

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++A        +     G+      R         Y L   + + +     P+  M K  
Sbjct: 262 IIADKEKCLGIVTGEAVGQVASQTLR-------NLYILSRLSPKPVYR---PVAFMDKLE 311

Query: 200 VRDLAREMGLDIADK 214
           + + AR++G  I  +
Sbjct: 312 IIEQARKLGFHILSR 326


>gi|254464002|ref|ZP_05077413.1| argininosuccinate synthase [Rhodobacterales bacterium Y4I]
 gi|206684910|gb|EDZ45392.1| argininosuccinate synthase [Rhodobacterales bacterium Y4I]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAEMLGIKPENIFIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD +A G
Sbjct: 105 LVEIAEATGADAVAHG 120


>gi|297584253|ref|YP_003700033.1| argininosuccinate synthase [Bacillus selenitireducens MLS10]
 gi|297142710|gb|ADH99467.1| argininosuccinate synthase [Bacillus selenitireducens MLS10]
          Length = 406

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              +VV+A SGG+D+SV    L+ +  Y+VI + L      +    +       +V   +
Sbjct: 2   SKGKVVLAYSGGLDTSVCIKYLQEEYDYEVIALGL---EIGEGKDLESLKAKALEVGAEK 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
            V         + D +E      ++P   +    E   P     +R +    L+ V  Q 
Sbjct: 59  AV---------IIDAKELLAKEYLMPALKANCMYEGKYPLSSALSRPLISKLLVEVAEQE 109

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 110 GAVAVAHG 117


>gi|42571981|ref|NP_974081.1| GMP synthase (glutamine-hydrolyzing), putative / glutamine
           amidotransferase, putative [Arabidopsis thaliana]
 gi|332196007|gb|AEE34128.1| GMP-synthase-C and glutamine amidotransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 434

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 35/203 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D  V+ A+SGGVDS+V A L+ +     IG  L          R        D ++   
Sbjct: 226 SDEHVICALSGGVDSTVAATLVHKA----IGDRLHCIFVDNGLLRYKEQERVMDTFE--- 278

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  ERF +    V+ P        ET    +       F        +
Sbjct: 279 --RDLHLPVTCVDASERFLSELKGVVDP--------ETKRKIIGREFINIFDQFAQELEK 328

Query: 136 LGADVLA-------TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 A           I S    G D      +    +        +    +     L
Sbjct: 329 KHGKKPAFLVQGTLYPDVIESCPPPGTDRTHSHTIKSHHN--------VGGLPKDMKLKL 380

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL  + K+ VR+L R + + +
Sbjct: 381 IEPLKLLFKDEVRELGRILNVPV 403


>gi|332159234|ref|YP_004424513.1| Putative thiamine biosynthesis protein THII [Pyrococcus sp. NA2]
 gi|331034697|gb|AEC52509.1| Putative thiamine biosynthesis protein THII [Pyrococcus sp. NA2]
          Length = 363

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 62/204 (30%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV  +SGG+DS V A L+ + G +V+ +                        +A+ V
Sbjct: 165 QGKVVALLSGGIDSPVAAFLMLKRGAEVVALHF------------------DQGTNAKAV 206

Query: 80  CDTINVSHYVFDYEERFR----NAVIVPFASSYAAGETPLPCVDCNRT----VKFSDL-- 129
            +       V +    +       ++             L  +          K + L  
Sbjct: 207 VEK------VVEILSEYSPDPIELIVENHFEVLKPYVQALTDIKRREWTCVICKIAMLKR 260

Query: 130 -LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
              + R++GA  + TG  +                          S  L     + +  +
Sbjct: 261 AAEIAREIGALGIVTGDSLGQVA----------------------SQTLSNLYFETVS-I 297

Query: 189 RFPLG----DMKKESVRDLAREMG 208
            FP+        KE + ++A+++G
Sbjct: 298 NFPIYRPLIGFDKEEIVNIAKKIG 321


>gi|308125628|ref|ZP_07663453.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           K5030]
 gi|308113006|gb|EFO50546.1| GMP synthase (glutamine-hydrolyzing) [Vibrio parahaemolyticus
           K5030]
          Length = 382

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 37/191 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           D  V++ +SGGVDSSVVA L+ R  G  +  V      L+L   ++     G        
Sbjct: 219 DDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGQQVMDMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  D   ++    D EERF          +      P         V        +
Sbjct: 271 -------DKFGLNIIKVDAEERF--------LEALKGKSDPEEKRKTIGHVFVDVFDEES 315

Query: 134 RQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           ++L  A  LA G      +        +  + +           +          L  PL
Sbjct: 316 KKLKNAKWLAQGTIYPDVIESAASKTGKAHVIKSHHN-------VGGLPDDMEMGLVEPL 368

Query: 193 GDMKKESVRDL 203
            ++ K+ VR +
Sbjct: 369 RELFKDEVRKM 379


>gi|208434941|ref|YP_002266607.1| GMP synthase [Helicobacter pylori G27]
 gi|226739631|sp|B5Z842|GUAA_HELPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|208432870|gb|ACI27741.1| GMP synthase [Helicobacter pylori G27]
          Length = 508

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+  R L +E+G
Sbjct: 358 PLRELFKDEARLLGKELG 375


>gi|320161952|ref|YP_004175177.1| GMP synthase [Anaerolinea thermophila UNI-1]
 gi|319995806|dbj|BAJ64577.1| GMP synthase [glutamine-hydrolyzing] [Anaerolinea thermophila
           UNI-1]
          Length = 518

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV  AL+ R  G  +  V            RKG     + V  A R   
Sbjct: 215 VLSAVSGGVDSSVATALVHRAVGDQLTAVF-----VDTGMLRKGE---REQVETAFR--K 264

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + V     +  E F +    V  P       GET                    R+LG 
Sbjct: 265 NLGVRLITVNAVEEFLDRLEGVTDPEGKRKIIGETF-----------IRIFEGQARRLGN 313

Query: 139 -DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G      +      +++    +           +    +     L  PL  + K
Sbjct: 314 PPFLVQGTIYPDVVESSAPDRQKAHKIKSHHN-------VGGLPEDMTFQLVEPLRYLFK 366

Query: 198 ESVRDLAREMGLD 210
           + VR +   +GL 
Sbjct: 367 DEVRLVGEALGLP 379


>gi|254555279|ref|YP_003061696.1| hypothetical protein JDM1_0110 [Lactobacillus plantarum JDM1]
 gi|254044206|gb|ACT60999.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
          Length = 276

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 40/197 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV VA SGG+DS++V  +      DV+G      ++  A          ++   A  + 
Sbjct: 19  QRVTVAFSGGIDSTLVLKMAL----DVLG-----RDNVTAVVANSELFTDEEFDKAMSLA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +  +          +   +   +  +    TP       +   +S L  +    G+  
Sbjct: 70  EELGANV---------QGTTLDYLSDDHIKNNTPDSWYYAKKMF-YSRLNDIAANNGSTA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G      +   D+   R  +    +                         D  K  V
Sbjct: 120 VLDG------MIKNDENDYRPGLKARSEAG---------------ARSLLQEADFFKTDV 158

Query: 201 RDLAREMGLDIADKSDS 217
           R LA+E+GL   +K  S
Sbjct: 159 RALAQELGLTNWNKVAS 175


>gi|154249562|ref|YP_001410387.1| NAD+ synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153498|gb|ABS60730.1| NAD+ synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 294

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 106/293 (36%), Gaps = 81/293 (27%)

Query: 24  VVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V+ +SGGVDS+VV ALL     K    +++ +   +   R +SK          V DA+ 
Sbjct: 29  VIGISGGVDSAVVLALLTRTIEKE---NILAL---ILPERDSSKES--------VRDAKL 74

Query: 79  VCDTINVSHYVFDYEERFR---------------NAV-IVPFASSYAAGETPLPCVDCNR 122
           VC+   V++ +F      R                ++ I      +   + P      N 
Sbjct: 75  VCNYFGVNYKIFPITGALRKLGAYSLFPPALFIPESIKISYSKKRWERYQDPYIMDLKNE 134

Query: 123 TVKFSDLLSVTRQLGADVLAT---GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
                       +L    LA     H +R      +  KR                 +  
Sbjct: 135 G----------DELFLKGLAYYRIKHRVRMCKLYMEAEKRGYC-------------VVGT 171

Query: 180 TTQQQLCDLRF-----------PLGDMKKESVRDLAREMGLD--IADKSDSQDICFVQQG 226
           T + +L    +           P+  + K  V +LA+ +G+   I +K  + D+      
Sbjct: 172 TNKTELALGLYVKWGDDAVDIEPIKHLYKTQVFELAKHLGVPEKIINKKPTPDLIPGIND 231

Query: 227 ------KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT-IGQRRGLGV 272
                 +Y  + K + +  + EG +  ++ ++L +   I+ +T I + +GLG+
Sbjct: 232 EDAFGIEYSKLDKILFSIESNEGKVEDIDEKLLSKVKEIMRFTKIRELKGLGI 284


>gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
 gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
          Length = 436

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 35/199 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  ++ +A+SGG+DS V+  L K+  Y++  +          + +     +  D    + 
Sbjct: 17  KQKKLFLAVSGGLDSMVLLHLFKQLNYEITVLH--------CNFQLRGLESFGDQEFIQN 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            CD  N+      +  +F       FA  Y             R +++S    +  +   
Sbjct: 69  YCDKNNIKI----FTTQFDTQ---AFAEDYKLSIQ-----VAARELRYSWFYELLEEKHF 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT--QQQLCDLRFPLGDMK 196
           D L T H+    L           + R   L+          T   +Q   +  PL    
Sbjct: 117 DYLLTAHHADDNLE-----TFIINLTRGTGLD--------GLTGIPEQNDKIIRPLLPFS 163

Query: 197 KESVRDLAREMGLDIADKS 215
           +E +   A+E  ++  + S
Sbjct: 164 REEILKYAQENNIEWREDS 182


>gi|15222505|ref|NP_176553.1| GMP synthase (glutamine-hydrolyzing), putative / glutamine
           amidotransferase, putative [Arabidopsis thaliana]
 gi|12324937|gb|AAG52416.1|AC011622_4 GMP synthase; 61700-64653 [Arabidopsis thaliana]
 gi|56381989|gb|AAV85713.1| At1g63660 [Arabidopsis thaliana]
 gi|332196006|gb|AEE34127.1| GMP-synthase-C and glutamine amidotransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 534

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 35/203 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D  V+ A+SGGVDS+V A L+ +     IG  L          R        D ++   
Sbjct: 226 SDEHVICALSGGVDSTVAATLVHKA----IGDRLHCIFVDNGLLRYKEQERVMDTFE--- 278

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  ERF +    V+ P        ET    +       F        +
Sbjct: 279 --RDLHLPVTCVDASERFLSELKGVVDP--------ETKRKIIGREFINIFDQFAQELEK 328

Query: 136 LGADVLA-------TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 A           I S    G D      +    +        +    +     L
Sbjct: 329 KHGKKPAFLVQGTLYPDVIESCPPPGTDRTHSHTIKSHHN--------VGGLPKDMKLKL 380

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL  + K+ VR+L R + + +
Sbjct: 381 IEPLKLLFKDEVRELGRILNVPV 403


>gi|299148581|ref|ZP_07041643.1| GMP synthase [Bacteroides sp. 3_1_23]
 gi|298513342|gb|EFI37229.1| GMP synthase [Bacteroides sp. 3_1_23]
          Length = 507

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +VV+ +SGGVDSSV A LL +  G ++  + 
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF 245


>gi|297837025|ref|XP_002886394.1| hypothetical protein ARALYDRAFT_893078 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332235|gb|EFH62653.1| hypothetical protein ARALYDRAFT_893078 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 534

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 35/203 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D  V+ A+SGGVDS+V A L+ +     IG  L          R        D ++   
Sbjct: 226 SDEHVICALSGGVDSTVAATLVHKA----IGDRLHCIFVDNGLLRYKEQERVMDTFE--- 278

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  ERF +    V+ P        ET    +       F        +
Sbjct: 279 --RDLHLPVTCVDASERFLSELKGVVDP--------ETKRKIIGKEFINIFDQFAQELEK 328

Query: 136 LGADVLA-------TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 A           I S    G D      +    +        +    +     L
Sbjct: 329 KHGKKPAFLVQGTLYPDVIESCPPPGTDRTHSHTIKSHHN--------VGGLPKDMKLKL 380

Query: 189 RFPLGDMKKESVRDLAREMGLDI 211
             PL  + K+ VR+L R + + +
Sbjct: 381 IEPLKLLFKDEVRELGRILNVPV 403


>gi|237721354|ref|ZP_04551835.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 2_2_4]
 gi|293369434|ref|ZP_06616019.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229449150|gb|EEO54941.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 2_2_4]
 gi|292635601|gb|EFF54108.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 507

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +VV+ +SGGVDSSV A LL +  G ++  + 
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF 245


>gi|257065750|ref|YP_003152006.1| PP-loop domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256797630|gb|ACV28285.1| PP-loop domain protein [Anaerococcus prevotii DSM 20548]
          Length = 269

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 28/142 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGS 66
           +     +  +V VA+SGG DS ++A L++         +DV  +++           +  
Sbjct: 28  EFSLINEGDKVAVAISGGKDSLILAKLIEELHKHSRVKFDVEYISM-----DPGYDNENR 82

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               +++         +N+   ++D      + V    A +   G+   PC  C   ++ 
Sbjct: 83  DLLEKNLAY-------LNIDGTIYD------SEVFE-VAETITKGD--YPCYMC-ARMRR 125

Query: 127 SDLLSVTRQLGADVLATGHYIR 148
             L +  ++LG + +A GH++ 
Sbjct: 126 GFLYAKAKELGCNKVALGHHMN 147


>gi|148642613|ref|YP_001273126.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|261349566|ref|ZP_05974983.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
 gi|148551630|gb|ABQ86758.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii ATCC 35061]
 gi|288861524|gb|EFC93822.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
          Length = 305

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  +V+VA+SGG DS     +L    K          + + +    +  +G     Q+  
Sbjct: 47  KGDKVLVALSGGKDSVTTLEILNSFRK----------MNIIDICAVTVDEGIDNYRQEGV 96

Query: 75  D-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLS 131
           D A R    + + H V   +E +   +          G     C  C   R    +    
Sbjct: 97  DIAIRHAKRLGIEHKVVSLKEEYGITLDEIMQKDNHIGS----CSYCGVFRRTIIN---K 149

Query: 132 VTRQLGADVLATGHYI 147
             R++GA  +ATGH +
Sbjct: 150 AAREMGATKIATGHNL 165


>gi|147920111|ref|YP_686127.1| putative thiamine biosynthesis protein [uncultured methanogenic
           archaeon RC-I]
 gi|110621523|emb|CAJ36801.1| putative thiamine biosynthesis protein [uncultured methanogenic
           archaeon RC-I]
          Length = 393

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 46/211 (21%)

Query: 24  VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VAM SGG+DS V A L+ + G +++ V                  A   + +  + C  
Sbjct: 183 MVAMVSGGIDSPVAAWLMMKRGCEIVPVFFHN---APYFDDTTMNRALDTLRELSKWCPG 239

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             ++ YV  +             +    G     CV C + + +    ++  + GA  + 
Sbjct: 240 HGMTAYVMPHGP--------NLQAFQEKGNQKYTCVFC-KHLMYKVARAIAEKEGAHGIV 290

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR---FPLGD----M 195
           TG  I                                T+   L ++    FP+      M
Sbjct: 291 TGSSIGQ--------------------------VASQTSNNMLAEIYGVDFPINHPLIGM 324

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG 226
            K+ + +L+R +GL       +     V + 
Sbjct: 325 DKDEIVELSRRIGLFDLSTKKAMGCKAVPKH 355


>gi|21228898|ref|NP_634820.1| hypothetical protein MM_2796 [Methanosarcina mazei Go1]
 gi|20907428|gb|AAM32492.1| conserved protein [Methanosarcina mazei Go1]
          Length = 302

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 80/251 (31%), Gaps = 54/251 (21%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-------SKRKGSCCAG 70
            K+  + VA+SGG DSSV   ++            ++   R                   
Sbjct: 47  KKNDVIAVALSGGKDSSVALYIMH-----------KILGDRPDIQIVAISVDEGIHGYRP 95

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           Q +  A+++ + + V H +  +++     +          G     C  C    K S L 
Sbjct: 96  QSLELAKQLTEALGVRHIIKSFKDEHGATMDELAVMDREKGT----CSYCGVLRK-SILN 150

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V  ++GA  L TGH +        D + + I+        D    +       +  L  
Sbjct: 151 RVAIEIGATKLVTGHNL--------DDEAQTILL--NHFRGDMERMVRLAPPVAVEGLVM 200

Query: 191 ---PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
              PL ++ ++ V   A    L +                  D  +   AG AL G+I  
Sbjct: 201 RAKPLRNIPEKEVALYALVNSLPV------------------DFSECPYAGEALRGEIRE 242

Query: 248 LNGQILGRHNG 258
           L       H G
Sbjct: 243 LLNGFETNHPG 253


>gi|328884512|emb|CCA57751.1| GMP synthase [Streptomyces venezuelae ATCC 10712]
          Length = 533

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 29/196 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R V  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   V
Sbjct: 229 KRAVCGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 279

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T  V+  V D +ERF  A          AG +     +  R +   + + V  Q  A+
Sbjct: 280 AST-GVNLKVVDAQERFLTA---------LAGVS---DPETKRKIIGREFIRVFEQAQAE 326

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++A        +     G     +            +   + +    +    +L  PL  
Sbjct: 327 IVAESAGTGEDVAFLVQGTLYPDIVESGGGTGTANIKSH-HNVGGLPEDLEFELVEPLRQ 385

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + +E+GL 
Sbjct: 386 LFKDEVRMVGQELGLP 401


>gi|318042580|ref|ZP_07974536.1| PP family ATPase [Synechococcus sp. CB0101]
          Length = 287

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 44/213 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA SGGVDS++VAA+     G   + +T                 A     +A+     
Sbjct: 33  LVAYSGGVDSALVAAIAAEQLGAQALAIT-----------GVSPALAPHLREEAQLQAQW 81

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + + H      E   + +  P  SS  A      C  C R +    LL+  R   A    
Sbjct: 82  MGIEH-----REIATSELNDPAYSSNPADR----CYACKREL--HTLLAEMRDAAAAAGF 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
               +   +   D G  R  +                    Q   +  PL +  + K  V
Sbjct: 131 EAAVVLDGVNHDDLGDHRPGIRAA-----------------QERGVISPLAELGISKAGV 173

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           R ++R +G    DK      C   +  Y +V+ 
Sbjct: 174 RAISRALGFPWWDKP--AQPCLASRFPYGEVIS 204


>gi|199594412|gb|ACH90670.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL +  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF---------VDTGLLRWQEGDQVMAMF 85

Query: 79  VCDTINVSHYVFDYEERFRNA 99
             + + V     +   R+  A
Sbjct: 86  -AEHMGVKVVRVNAAGRYFKA 105


>gi|325859994|ref|ZP_08173121.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482520|gb|EGC85526.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 536

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 47/201 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL +  G ++  +     +     K +             +
Sbjct: 235 NDRVILGLSGGVDSSVCAVLLNKAIGKNLTCIF---VDHGMLRKNE--------FAKVMK 283

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
               + ++    D  E+F              G T     +  R +   D + V     R
Sbjct: 284 AYKGLGLNVTGVDASEKFFKD---------LEGVT---DPEQKRKIIGRDFVEVFNAEAR 331

Query: 135 QL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ++  A  LA        I S    G   K                  +     +    L 
Sbjct: 332 KITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPDEMRLRLC 377

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR +  ++ + 
Sbjct: 378 EPLRWLFKDEVRRVGHQLEMP 398


>gi|313633851|gb|EFS00574.1| GMP synthase (glutamine-hydrolyzing) [Listeria seeligeri FSL
           N1-067]
          Length = 518

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|307823553|ref|ZP_07653782.1| argininosuccinate synthase [Methylobacter tundripaludum SV96]
 gi|307735538|gb|EFO06386.1| argininosuccinate synthase [Methylobacter tundripaludum SV96]
          Length = 404

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   YD   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDV-YDCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + +   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGIKDIYIEDLREDFARDYVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GA+ ++ G
Sbjct: 108 NETGANAISHG 118


>gi|254173447|ref|ZP_04880120.1| NAD+ synthetase [Thermococcus sp. AM4]
 gi|214032856|gb|EEB73685.1| NAD+ synthetase [Thermococcus sp. AM4]
          Length = 254

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 45/181 (24%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+  A L  R  G + V+G+ +                  QDV DAR VC ++ +    
Sbjct: 38  DSATTAYLAARALGKEKVLGLIM-------------PYYKNQDVEDARLVCSSLGIECRE 84

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
            + +      ++  F S    G  P      N   +   ++        + L  G   RS
Sbjct: 85  INIKP-----IVDSFVS--QLGFQPDKRSLGNIMARTRMIILYAHANAKNYLVLGTSNRS 137

Query: 150 RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
               G             D   D +                PL ++ K  V ++A+ +G+
Sbjct: 138 EFLTG------YFTKWG-DGASDYA----------------PLINLYKTEVWEIAKLIGV 174

Query: 210 D 210
            
Sbjct: 175 P 175


>gi|254477369|ref|ZP_05090755.1| glutamine-dependent NAD(+) synthetase [Ruegeria sp. R11]
 gi|214031612|gb|EEB72447.1| glutamine-dependent NAD(+) synthetase [Ruegeria sp. R11]
          Length = 554

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGGVDS++VAA+     G + +   +                +   + DA  V
Sbjct: 285 KKVLLGLSGGVDSALVAAIAVDALGAENVRCVM----------LPSEYTSQGSLDDAEAV 334

Query: 80  CDTINVSHYVFDYEE 94
              + V +      E
Sbjct: 335 AKALGVHYDYVPISE 349


>gi|330428053|gb|AEC19387.1| GMP synthase [Pusillimonas sp. T7-7]
          Length = 528

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 19/79 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           V++ +SGGVDSSV AAL+ +  G  +  V                      + +A +V  
Sbjct: 226 VILGLSGGVDSSVAAALIHKAIGDQLTCVF--------------VDHGLLRLNEAEQVMS 271

Query: 80  --CDTINVSHYVFDYEERF 96
              D   +     D  + F
Sbjct: 272 TFADHFGIKVIHVDATDAF 290


>gi|308184133|ref|YP_003928266.1| NAD synthetase [Helicobacter pylori SJM180]
 gi|308060053|gb|ADO01949.1| NAD synthetase [Helicobacter pylori SJM180]
          Length = 260

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 75/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A          ++  DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSLVSMPENKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       +A+        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|255535022|ref|YP_003095393.1| Argininosuccinate synthase [Flavobacteriaceae bacterium 3519-10]
 gi|255341218|gb|ACU07331.1| Argininosuccinate synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 396

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 16/127 (12%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S  A  L K    +V  V +         + K +              
Sbjct: 3   KVVLAYSGGLDTSFCAVYLSKVKQLEVHAV-MVNLGGFSEEEIKKTEER----------A 51

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF--SDLLSVTRQLG 137
             + V   +V D  + + +  I              P    +  V F  + +    +++G
Sbjct: 52  YQLGVKSFHVIDDAQNYYDNCIKYLIFGNVLKNNTYPLSVSSERV-FQATAIAHYAKEIG 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 AKAIAHG 117


>gi|160887083|ref|ZP_02068086.1| hypothetical protein BACOVA_05099 [Bacteroides ovatus ATCC 8483]
 gi|260171605|ref|ZP_05758017.1| GMP synthase [Bacteroides sp. D2]
 gi|315919919|ref|ZP_07916159.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107494|gb|EDO09239.1| hypothetical protein BACOVA_05099 [Bacteroides ovatus ATCC 8483]
 gi|313693794|gb|EFS30629.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 507

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +VV+ +SGGVDSSV A LL +  G ++  + 
Sbjct: 213 DDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF 245


>gi|16803136|ref|NP_464621.1| GMP synthase [Listeria monocytogenes EGD-e]
 gi|24211754|sp|Q8Y822|GUAA_LISMO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|16410498|emb|CAC99174.1| guaA [Listeria monocytogenes EGD-e]
          Length = 518

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|147679000|ref|YP_001213215.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146275097|dbj|BAF60846.1| predicted ATPase [Pelotomaculum thermopropionicum SI]
          Length = 250

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 60/195 (30%), Gaps = 37/195 (18%)

Query: 22  RVVVAMSGGVDS-SV--VAALLKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV V MSGG DS S+     L+ R     +++  V + L                 D+  
Sbjct: 28  RVAVGMSGGKDSTSLLHALHLISRSAPVRFELEAVFVDL-------------GWPADISL 74

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C   NVS +V           I         GE   PC  C   ++         +
Sbjct: 75  LEEFCRLRNVSLHVV-------KTGIAEIVFEARKGE--NPCALC-AHLRRGAFHGKALE 124

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           LG + +A GH++   +             R          FL  T    +     PL  +
Sbjct: 125 LGCNKVALGHHLDDAIETFFMSLFYTGQLRTFSP----CTFLDRTGLTMIR----PLVYL 176

Query: 196 KKESVRDLAREMGLD 210
             E +R      GL 
Sbjct: 177 PAEDIRTWVEMEGLP 191


>gi|326201017|ref|ZP_08190889.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
 gi|325988585|gb|EGD49409.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
          Length = 306

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 32/171 (18%)

Query: 24  VVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V  SGG DS+ +A L+K+  G  V   T+       A               A++V D 
Sbjct: 23  LVLFSGGKDSTYLAHLIKQVKGQRVCLFTVDNSFEDDAQ--------------AKKVADQ 68

Query: 83  INVSHYVF-----DYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDL-LSVTRQ 135
           +N+  +++     D  + +   +I P            P C  CNR   F+ L +     
Sbjct: 69  LNLDLFIYKPKVRDILKFYNFLLIDPAIID----LDDNPLCYLCNRY--FTSLGMHFADN 122

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYFLFATTQQ 183
           +G   +A+G               R ++    ++ +   D +Y    TTQ+
Sbjct: 123 MGIPFVASGTTAAQIFGTKAQMSER-MINIAEEMLKARFDNAYETIKTTQR 172


>gi|255007776|ref|ZP_05279902.1| GMP synthase [Bacteroides fragilis 3_1_12]
 gi|313145481|ref|ZP_07807674.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           fragilis 3_1_12]
 gi|313134248|gb|EFR51608.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           fragilis 3_1_12]
          Length = 507

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + +VV+ +SGGVDSSV A LL +  G ++  + 
Sbjct: 213 NDKVVLGLSGGVDSSVAAVLLNKAIGKNLTCIF 245


>gi|269792838|ref|YP_003317742.1| GMP synthase, large subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100473|gb|ACZ19460.1| GMP synthase, large subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 513

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 33/202 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D  V+  +SGGVDS+V A L  R     IG  L+         RK        
Sbjct: 210 EIRRRVGDDTVICGLSGGVDSTVAAVLTSRA----IGDRLKCIFVDNGLLRKDE------ 259

Query: 73  VYDARRVCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              AR V +   ++N+   + D   RF         S+    E P         V     
Sbjct: 260 ---ARSVMETYSSLNLDVKMVDASHRF--------LSALEGVEEPERKRKVIGEVFVRVF 308

Query: 130 LSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 + GA  L  G      +  G  GK   ++    +        +          +
Sbjct: 309 EEEASSIPGAQWLLQGTLYPDVIESGHQGKGASVIKSHHN--------VGGLPDFMRLKV 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL D+ K+ VR +   +G+ 
Sbjct: 361 LEPLRDLFKDEVRRIGSLLGVP 382


>gi|284801428|ref|YP_003413293.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5578]
 gi|284994570|ref|YP_003416338.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5923]
 gi|284056990|gb|ADB67931.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5578]
 gi|284060037|gb|ADB70976.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5923]
          Length = 518

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|224502590|ref|ZP_03670897.1| GMP synthase [Listeria monocytogenes FSL R2-561]
          Length = 514

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|153950993|ref|YP_001397288.1| exsB protein [Campylobacter jejuni subsp. doylei 269.97]
 gi|167016420|sp|A7H1A8|QUEC_CAMJD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|152938439|gb|ABS43180.1| exsB protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 224

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 78/203 (38%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEQRTQEKEKECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN----RTVKF--SDLLSV- 132
             + V   Y+ D    F   +     +  +           +      V F     LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCISDIPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVCIK 162

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL  + K  + +LA +  + + 
Sbjct: 163 TPLVRLNKAKIVELALKENVPLE 185


>gi|121612477|ref|YP_999736.1| exsB protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926832|ref|ZP_01810511.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|167004712|ref|ZP_02270470.1| exsB protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205355756|ref|ZP_03222526.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|167016421|sp|A1VX95|QUEC_CAMJJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|87248967|gb|EAQ71929.1| exsB protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844557|gb|EDK21664.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205346533|gb|EDZ33166.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 224

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 78/203 (38%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEQRTQEKEKECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN----RTVKF--SDLLSV- 132
             + V   Y+ D    F   +     +  +           +      V F     LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCISDVPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVCIK 162

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL  + K  + +LA +  + + 
Sbjct: 163 TPLVRLNKAKIVELALKENVPLE 185


>gi|329115339|ref|ZP_08244093.1| Argininosuccinate synthase [Acetobacter pomorum DM001]
 gi|326695318|gb|EGE47005.1| Argininosuccinate synthase [Acetobacter pomorum DM001]
          Length = 413

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L++  G +V+  T                  G+++  AR+ 
Sbjct: 11  KKVVLAYSGGLDTSVILRWLQKTYGCEVVTFT-------------ADLGQGEELEPARKK 57

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   V      D  E F    + P           Y  G +    +   R +       
Sbjct: 58  AEMFGVKEIFVEDLRETFVKDFVFPMFRANTLYEGQYLLGTSIARPLIAQRQI------E 111

Query: 132 VTRQLGADVLATG 144
           +   +GAD +A G
Sbjct: 112 IAEAVGADAVAHG 124


>gi|297250385|ref|ZP_06864202.2| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768]
 gi|296839058|gb|EFH22996.1| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768]
          Length = 436

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 35/233 (15%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
             +     +  VA+SGG+DS V+  LL R G    G  +     +      G        
Sbjct: 15  FPQGLNGKKTAVALSGGLDSVVLLHLLVRAGKK--GGFI----PKTVHIHHGLSPRADAW 68

Query: 74  YD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D  +  CD + V           +  V        AA              +++     
Sbjct: 69  ADFCQNYCDMLGVELETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
               G DVLA  H+        DD     ++             + A        + + P
Sbjct: 113 ----GFDVLALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPFGENGIIWRP 161

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           L    ++ + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 162 LLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGR 214


>gi|257462598|ref|ZP_05627008.1| argininosuccinate synthase [Fusobacterium sp. D12]
 gi|317060249|ref|ZP_07924734.1| argininosuccinate synthase [Fusobacterium sp. D12]
 gi|313685925|gb|EFS22760.1| argininosuccinate synthase [Fusobacterium sp. D12]
          Length = 403

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 95/315 (30%), Gaps = 91/315 (28%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  ++V+A SGG+D+SV+   L+   Y  +VI V                    ++    
Sbjct: 2   KKEKIVLAYSGGLDTSVIVPWLQEH-YQAEVICV-------------AVDVGQQENFQQV 47

Query: 77  RRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
                 I     Y  D ++ F    + P   + A  E          R V    L+ + +
Sbjct: 48  EERAYKIGASKFYHVDKKKEFVEEYLFPTLQAGAKYENKYLLGTSTARPVIAKALVEIAK 107

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP-- 191
           Q  AD +A G                           DQ  F            +  P  
Sbjct: 108 QEKADYIAHG---------------------ATGKGNDQVRFELGIKALAPEMKIIAPWR 146

Query: 192 LGDM--KKESVRDLAREMGLDIADKSD----SQD-------------------------I 220
           + ++  + + +     + G+D+   S     SQD                         +
Sbjct: 147 IWNLQSRSDEI-AYLEKHGIDLPFPSKKHSYSQDENLFHISHEGNELEQTEKEPNYSNFL 205

Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY----TIGQRRGLGVAMGE 276
            F+   +Y             +G  V LNG+ +   +GI       TI  + G+G     
Sbjct: 206 KFISPLEYTPEEPEYLRIGFQQGIPVSLNGEKM---DGISLLQKLNTICGKHGIGC---- 258

Query: 277 PLFVVYLDKNSSRVI 291
                 +D   +R++
Sbjct: 259 ------IDMVENRLV 267


>gi|187935286|ref|YP_001884957.1| PP-loop family protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723439|gb|ACD24660.1| PP-loop family protein [Clostridium botulinum B str. Eklund 17B]
          Length = 288

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 29/134 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ VA+SGG DS ++A L   L++ G   ++V  + +                   +
Sbjct: 52  EGDKIGVAISGGKDSLLMAKLFQELQKHGQMNFEVEFIAM-----DPGYHPHIRQLLLDN 106

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                  C+ +N+   +++    F   V+   A  Y       PC  C   ++   L + 
Sbjct: 107 -------CEYLNIPITIYE-SGIF--DVVDKMAKDY-------PCYLC-ARMRRGSLYNK 148

Query: 133 TRQLGADVLATGHY 146
            ++L  + LA GH+
Sbjct: 149 AQELECNKLALGHH 162


>gi|164688054|ref|ZP_02212082.1| hypothetical protein CLOBAR_01699 [Clostridium bartlettii DSM
           16795]
 gi|164602467|gb|EDQ95932.1| hypothetical protein CLOBAR_01699 [Clostridium bartlettii DSM
           16795]
          Length = 403

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+S+    LK + Y  DVI V   +      SK +           A+  
Sbjct: 4   KVVLAYSGGLDTSITIPWLKEN-YDLDVIAVCANVGQDDDMSKIE---------EKAKAS 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
                +  YV D  E F    I     +    E   P      R +    L+ + ++ GA
Sbjct: 54  GA---IKAYVEDLREEFITTTIYQAIKAEVLYENRYPLGTALARPIIAKKLVEIAQKEGA 110

Query: 139 DVLATG 144
             +  G
Sbjct: 111 KYICHG 116


>gi|119186717|ref|XP_001243965.1| hypothetical protein CIMG_03406 [Coccidioides immitis RS]
          Length = 421

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 27/131 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+S + A L   G++V+                      +D  +A R   
Sbjct: 6   KVLLAYSGGLDTSCILAWLIEQGHEVVCF-------------LADVGQAEDFKEAERKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +      V D +  F   +              Y  G +        R V    ++ V 
Sbjct: 53  AVGAKKLVVEDLKREFVEDLCFRAIQCNAIWEDRYLLGTSLA------RPVIARAMMRVA 106

Query: 134 RQLGADVLATG 144
           +Q G   ++ G
Sbjct: 107 KQEGCTAVSHG 117


>gi|326471688|gb|EGD95697.1| GMP synthase subunit B [Trichophyton tonsurans CBS 112818]
 gi|326483640|gb|EGE07650.1| GMP synthase [Trichophyton equinum CBS 127.97]
          Length = 541

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 54/208 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVI---GVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+K   G   + V+   GV ++L  +    +             
Sbjct: 237 VIGAVSGGVDSTVAAKLMKEAIGDRFHAVLVDNGV-MRLNEAEIVRET------------ 283

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNR 122
              +   + ++  V D  E+F      V+ P          F   +   +T    V+ + 
Sbjct: 284 ---LTKNLGINLTVIDASEKFLGRLKGVVDPEQKRKIIGNTFIEIFQ--DTAKTLVEESA 338

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             K  D +    Q           I S  + G     +                      
Sbjct: 339 GYKEGDKIEWLLQ----GTLYPDVIESISFKGPSATIKTHHNVG-----------GLLKG 383

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
             L  L  PL ++ K+ VR L   +G+ 
Sbjct: 384 MHL-KLIEPLRELFKDEVRSLGTNLGIP 410


>gi|327309540|ref|XP_003239461.1| GMP synthase subunit B [Trichophyton rubrum CBS 118892]
 gi|326459717|gb|EGD85170.1| GMP synthase subunit B [Trichophyton rubrum CBS 118892]
          Length = 541

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 54/208 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVI---GVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+K   G   + V+   GV ++L  +    +             
Sbjct: 237 VIGAVSGGVDSTVAAKLMKEAIGDRFHAVLVDNGV-MRLNEAEIVRET------------ 283

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNR 122
              +   + ++  V D  E+F      V+ P          F   +   +T    V+ + 
Sbjct: 284 ---LTKNLGINLTVIDASEKFLGRLKGVVDPEQKRKIIGNTFIEIFQ--DTAKTLVEESA 338

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             K  D +    Q           I S  + G     +                      
Sbjct: 339 GYKEGDKIEWLLQ----GTLYPDVIESISFKGPSATIKTHHNVG-----------GLLKG 383

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
             L  L  PL ++ K+ VR L   +G+ 
Sbjct: 384 MHL-KLIEPLRELFKDEVRSLGTNLGIP 410


>gi|298482648|ref|ZP_07000832.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298271111|gb|EFI12688.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 248

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGRRARIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+T  V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCETYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|297379551|gb|ADI34438.1| NAD+ synthetase [Helicobacter pylori v225d]
          Length = 260

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A          +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSLVSTPESKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       +A+        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L +G   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELLKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|299148919|ref|ZP_07041981.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|295087122|emb|CBK68645.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Bacteroides xylanisolvens XB1A]
 gi|298513680|gb|EFI37567.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 248

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGRRARIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+T  V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCETYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|293370774|ref|ZP_06617320.1| PP-loop family protein [Bacteroides ovatus SD CMC 3f]
 gi|292634134|gb|EFF52677.1| PP-loop family protein [Bacteroides ovatus SD CMC 3f]
          Length = 248

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGRRARIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+T  V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCETYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|262282315|ref|ZP_06060083.1| bifunctional GMP synthase/glutamine amidotransferase [Streptococcus
           sp. 2_1_36FAA]
 gi|262261606|gb|EEY80304.1| bifunctional GMP synthase/glutamine amidotransferase [Streptococcus
           sp. 2_1_36FAA]
          Length = 518

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 206 MDNFIDMQIKQIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 260

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      ++     +     ++    D  +RF + +                 V   
Sbjct: 261 LRKGEADQVMEM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 314

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 315 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 358

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 359 EDMQFELIEPLNTLYKDEVRTLGSELGMP 387


>gi|255520350|ref|ZP_05387587.1| GMP synthase [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGEQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|75908289|ref|YP_322585.1| argininosuccinate synthase [Anabaena variabilis ATCC 29413]
 gi|119361258|sp|Q3MBE6|ASSY_ANAVT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|75702014|gb|ABA21690.1| argininosuccinate synthase [Anabaena variabilis ATCC 29413]
          Length = 400

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELEPIRE 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                      V D +E F      P   + A  E   P      R +    L+    + 
Sbjct: 52  KALKSGASESLVADVKESFIKDYAFPAIQANALYENRYPLGTALARPLIAKILVEAAEKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|261749248|ref|YP_003256933.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497340|gb|ACX83790.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 511

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +V++  SGGVDS V A ++ +     IG      +S             ++ 
Sbjct: 210 IKKRVSSKKVILGFSGGVDSFVAAYIIHQA----IG------DSLHCIFVDTGFLLEKEK 259

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVP 103
                +C  +N S  + D  ERF ++   VI P
Sbjct: 260 EKISHICKKMNFSIKIIDARERFLSSLTGVIDP 292


>gi|302497947|ref|XP_003010972.1| hypothetical protein ARB_02704 [Arthroderma benhamiae CBS 112371]
 gi|302664979|ref|XP_003025848.1| hypothetical protein TRV_01737 [Trichophyton verrucosum HKI 0517]
 gi|291174519|gb|EFE30332.1| hypothetical protein ARB_02704 [Arthroderma benhamiae CBS 112371]
 gi|291188145|gb|EFE43494.1| hypothetical protein TRV_01737 [Trichophyton verrucosum HKI 0517]
          Length = 541

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 54/208 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVI---GVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+K   G   + V+   GV ++L  +    +             
Sbjct: 237 VIGAVSGGVDSTVAAKLMKEAIGDRFHAVLVDNGV-MRLNEAEIVRET------------ 283

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNR 122
              +   + ++  V D  E+F      V+ P          F   +   +T    V+ + 
Sbjct: 284 ---LTKNLGINLTVIDASEKFLGRLKGVVDPEQKRKIIGNTFIEIFQ--DTAKTLVEESA 338

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             K  D +    Q           I S  + G     +                      
Sbjct: 339 GYKEGDKIEWLLQ----GTLYPDVIESISFKGPSATIKTHHNVG-----------GLLKG 383

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
             L  L  PL ++ K+ VR L   +G+ 
Sbjct: 384 MHL-KLIEPLRELFKDEVRSLGTNLGIP 410


>gi|148243194|ref|YP_001228351.1| PP family ATPase [Synechococcus sp. RCC307]
 gi|147851504|emb|CAK28998.1| ATP-utilizing enzyme of the PP-loop superfamily [Synechococcus sp.
           RCC307]
          Length = 284

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 53/200 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV VA SGGVDS++VAA+ +    +    V G++  L              A     +AR
Sbjct: 29  RVCVAYSGGVDSALVAAIAQEQLAEAALAVTGISPAL--------------APHLREEAR 74

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                + ++H         ++        +YA   T   C  C R +    L  ++R   
Sbjct: 75  LQAQWLGIAHQEV-LTAELQD-------PAYATNPTD-RCYACKREL-HRHLAEISRA-- 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
               A G  +   +   D G  R  +    +                   +  PL +++ 
Sbjct: 123 ----AAGAQVLDGVNHDDLGDHRPGIDAAREAG-----------------VCSPLAELQI 161

Query: 197 -KESVRDLAREMGLDIADKS 215
            K SVR  ++ +G    DK 
Sbjct: 162 DKASVRRFSKALGFPWWDKP 181


>gi|148265922|ref|YP_001232628.1| PP-loop domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399422|gb|ABQ28055.1| PP-loop domain protein [Geobacter uraniireducens Rf4]
          Length = 296

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 66/198 (33%), Gaps = 51/198 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGGVDS+    LLK   +DV+G      +   A           +   A  +   
Sbjct: 42  VLIAFSGGVDST---FLLKVA-HDVLG------DKACAITATSPTYPESEFRQAVSLARE 91

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           I     V +  E      I  FA          P   C  C + + F   +      G  
Sbjct: 92  IGARQIVMESNELE----IPGFAE--------NPRDRCYHCKKEL-FQLCVEKAALEGYA 138

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKK 197
            +A G          DD    R   R +   +                +R PL    + K
Sbjct: 139 CIADG-------SNTDDLGDYRPGRRAVGELK----------------VRSPLLEAGLSK 175

Query: 198 ESVRDLAREMGLDIADKS 215
           + +R L+RE+GL   DK 
Sbjct: 176 DDIRGLSRELGLPTWDKQ 193


>gi|220932926|ref|YP_002509834.1| PP-loop domain protein [Halothermothrix orenii H 168]
 gi|219994236|gb|ACL70839.1| PP-loop domain protein [Halothermothrix orenii H 168]
          Length = 260

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 23/138 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR----KASKRKGSCC 68
           + D   +   ++V +SGG DSS    LL    Y V+ +  +  +        +   G   
Sbjct: 19  EFDMIEEGDNILVGLSGGKDSS---FLL----Y-VLALINRYASLDFRLAALTVDLGFDG 70

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                   +  CD + V +YV          +     S     +T  PC  C    K   
Sbjct: 71  GKNYFDYLKNYCDRLGVKYYVL------ETEIASYILSE----KTEKPCARCAHFRK-GA 119

Query: 129 LLSVTRQLGADVLATGHY 146
           ++   ++ G + +A GH+
Sbjct: 120 IVDFMKENGFNKIAYGHH 137


>gi|325689720|gb|EGD31724.1| GMP synthase [Streptococcus sanguinis SK115]
          Length = 520

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 28/209 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +     +    + +   D +V++ +SGGVDSSVV  LL++  G  +I +           
Sbjct: 208 MDNFIDMEIQKIRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHGL 262

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            RKG      D+     +     ++       +RF + +                 V   
Sbjct: 263 LRKGEADQVMDM-----LGGKFGLNIIKAYAAKRFLDKLAGVSDPEQKRKIIGNEFVYV- 316

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
               F D    ++      LA G      +  G D  +     +           +    
Sbjct: 317 ----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGLP 360

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 EDMQFELIEPLNTLYKDEVRALGTELGMP 389


>gi|301318268|gb|ADK67049.1| GMP synthase [Stenotrophomonas sp. DSM 2408]
          Length = 184

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL R  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHRAIGDKLTCVF---------VDTGLLRYQEGDQVMAM- 84

Query: 79  VCDTINVSHYVFDYEERF 96
           + + + V     +  +R+
Sbjct: 85  MAENMGVKVVRVNAADRY 102


>gi|167759635|ref|ZP_02431762.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704]
 gi|167662761|gb|EDS06891.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704]
          Length = 449

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 29/153 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V+V +SGG DS  +  +L    K  G  V  V                  A  D  
Sbjct: 17  EKDKVIVGVSGGADSICLLFMLIQLKKEMGLSVEAVH--------VHHGLREKTADADAV 68

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             ++VC  + +          +   V              +   +  R V+      V +
Sbjct: 69  YVKKVCKELGIGL------RLYYEDVKSFAL------HNKMSEEEAGRYVRRRIFKEVLQ 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM 167
           + G   +A  H         +       +CR  
Sbjct: 117 EAGGTKIALAH-----HQNDNAETLLWNLCRGC 144


>gi|254830134|ref|ZP_05234789.1| GMP synthase [Listeria monocytogenes 10403S]
          Length = 514

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|307128612|ref|YP_003880642.1| putative argininosuccinate synthase/acetyltransferase activity of
           N-acetylglutamate synthase [Candidatus Sulcia muelleri
           CARI]
 gi|306483074|gb|ADM89944.1| putative argininosuccinate synthase/acetyltransferase activity of
           N-acetylglutamate synthase [Candidatus Sulcia muelleri
           CARI]
          Length = 578

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  ++++A SGG+D+S     L  +GY VI +                    +D+    +
Sbjct: 186 KGDKILLAYSGGLDTSFCLKYLINEGYKVITI-----------IINTGGFNNKDLESIEK 234

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQ 135
               I  + HY  + +E F    I              P    +    F  +L     ++
Sbjct: 235 KAINIGALYHYSINAKEYFYYKCIKYLVYGNILKNNTYPLSVSSERF-FQAILIAEYAKK 293

Query: 136 LGADVLATG 144
           L    ++ G
Sbjct: 294 LKVKAISHG 302


>gi|262172655|ref|ZP_06040333.1| LPS biosynthesis protein WbpG [Vibrio mimicus MB-451]
 gi|261893731|gb|EEY39717.1| LPS biosynthesis protein WbpG [Vibrio mimicus MB-451]
          Length = 378

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++         +    + + D       +
Sbjct: 70  IIGLSGGLDSSYAAYIAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLVDG------L 119

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V +++E  R  V      ++     P   +  +    FS L    R+ G   +
Sbjct: 120 GLDLYTEVVNWDEMRRLQV------AFLRAGIPDQDLVQDAAF-FSGLYKFARRHGIKHI 172

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 173 ITGSNFSTECCREPEEWGGY 192


>gi|300711905|ref|YP_003737719.1| PP-loop domain protein [Halalkalicoccus jeotgali B3]
 gi|299125588|gb|ADJ15927.1| PP-loop domain protein [Halalkalicoccus jeotgali B3]
          Length = 333

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 26/133 (19%)

Query: 24  VVAMSGGVDSSVVAALLKR---DGYDV--IGVTLQLYNSRKASKRKGSCCAGQDVYDA-R 77
           V+ +SGG DS V+  +L         V  +G+T+           +G         DA  
Sbjct: 57  VIGLSGGKDSVVLTHVLHETFAQDPRVEIVGLTIH----------EGIEGYRDKSLDACV 106

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            + D I + H V  Y E F    + V+          E    C  C    +   L     
Sbjct: 107 ELADEIGIRHEVVSYAEEFGVRMDDVVEDD------PENMAACAYCGVFRR-DVLSRYAE 159

Query: 135 QLGADVLATGHYI 147
           +L AD L TGH +
Sbjct: 160 RLDADKLLTGHNL 172


>gi|256823061|ref|YP_003147024.1| exsB protein [Kangiella koreensis DSM 16069]
 gi|256796600|gb|ACV27256.1| exsB protein [Kangiella koreensis DSM 16069]
          Length = 224

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R VV +SGG+DS+   A+ K  GYD              S   G     + +  A+++
Sbjct: 2  QKRAVVLLSGGLDSTTALAMAKSQGYDC----------YAMSFNYGQRSLAE-LNAAKKI 50

Query: 80 CDTINV-SHYVFDY 92
            +++   H V + 
Sbjct: 51 AQSLDAKEHIVVNL 64


>gi|124516144|gb|EAY57652.1| probable ATPase, PP-loop superfamily protein [Leptospirillum
           rubarum]
          Length = 307

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 17/136 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + +   K+ R++VA+SGG DS +    +L R GY   G  L L              +G+
Sbjct: 40  EFEMFGKNDRILVAVSGGKDS-LALWDILNRLGYRTTGFHLDL---------GIGGYSGE 89

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +   R       ++ +V    +      +    ++ A      PC  C  + K      
Sbjct: 90  SLEKTRAFALRYGLTLHVESLVQE-----VGASVANIAELTNRPPCSACGVS-KRHLFNR 143

Query: 132 VTRQLGADVLATGHYI 147
             ++L   V+ATGH +
Sbjct: 144 AAQKLECQVVATGHNL 159


>gi|317121464|ref|YP_004101467.1| NH(3)-dependent NAD(+) synthetase [Thermaerobacter marianensis DSM
           12885]
 gi|315591444|gb|ADU50740.1| NH(3)-dependent NAD(+) synthetase [Thermaerobacter marianensis DSM
           12885]
          Length = 617

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 18/124 (14%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + +SGG+DS++VA L     G + V GV +                + + + DA  V   
Sbjct: 353 LGLSGGIDSALVACLAADALGPERVTGVRM-----------PSPFTSEESLQDAEAVARN 401

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADV 140
           + +          F         +    G +     + N    ++ + L+++  + G  V
Sbjct: 402 LGIGLETIPIAGVF--DAFRQALAPLFGGRSFD-VAEENLQARIRGTLLMALANKFGGIV 458

Query: 141 LATG 144
           LATG
Sbjct: 459 LATG 462


>gi|293376552|ref|ZP_06622780.1| protein ExsB [Turicibacter sanguinis PC909]
 gi|325839386|ref|ZP_08166825.1| protein ExsB [Turicibacter sp. HGF1]
 gi|292644778|gb|EFF62860.1| protein ExsB [Turicibacter sanguinis PC909]
 gi|325490506|gb|EGC92822.1| protein ExsB [Turicibacter sp. HGF1]
          Length = 219

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D  V+V  SGG DS+           +VI VT   ++  +    +  C        A+
Sbjct: 2  KQDKAVLV-FSGGQDSTTCLYWALETFKEVIAVT---FDYGQRHHLELEC--------AK 49

Query: 78 RVCDTINVSHYVFDYE 93
           +C  + V H+V D  
Sbjct: 50 AICQELGVEHHVLDMS 65


>gi|255014182|ref|ZP_05286308.1| GMP synthase [Bacteroides sp. 2_1_7]
          Length = 506

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSV A LL +  G ++  +                     
Sbjct: 205 ELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGKNLTCIF-----------VDHGLLRKN 253

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
           +  +  R  + + ++    + +++F   
Sbjct: 254 EFENVMRDYEHLGLNVIGVNAKDKFYKE 281


>gi|150008447|ref|YP_001303190.1| GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|256841569|ref|ZP_05547076.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|298376302|ref|ZP_06986258.1| GMP synthase [Bacteroides sp. 3_1_19]
 gi|226739652|sp|A6LD04|GUAA_PARD8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149936871|gb|ABR43568.1| glutaminne-hydrolyzing GMP synthase [Parabacteroides distasonis
           ATCC 8503]
 gi|256737412|gb|EEU50739.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|298267339|gb|EFI08996.1| GMP synthase [Bacteroides sp. 3_1_19]
          Length = 506

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSV A LL +  G ++  +                     
Sbjct: 205 ELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGKNLTCIF-----------VDHGLLRKN 253

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
           +  +  R  + + ++    + +++F   
Sbjct: 254 EFENVMRDYEHLGLNVIGVNAKDKFYKE 281


>gi|94676486|ref|YP_589073.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|254800087|sp|Q1LSJ1|GUAA_BAUCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94219636|gb|ABF13795.1| GMP synthetase, glutamine-hydrolyzing [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 526

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 22/188 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+ +SGGVDS+V A LL       IGV L          R       +++        +
Sbjct: 230 VVLGLSGGVDSTVTAMLLHYA----IGVNLTCIFIDNGLLRYNEASNIREI-------FS 278

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+S  +              F  + A    P       R +       +  +    +  
Sbjct: 279 KNLSLNIIYVRSE------DRFLRALAGIYNPEE----KRKIIGRLFSEIFEEQARSLTK 328

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           T  ++       D  +         ++ +   + +          L  PL ++ K+ VR 
Sbjct: 329 TATWLAQGTIYPDIIESAISHVSLTNVIKSH-HNVGGLPNTLNLKLIEPLKNLFKDEVRK 387

Query: 203 LAREMGLD 210
           +  E+GL 
Sbjct: 388 IGLELGLP 395


>gi|20808089|ref|NP_623260.1| thiamine biosynthesis ATP pyrophosphatase [Thermoanaerobacter
           tengcongensis MB4]
 gi|22001998|sp|Q8R9F0|THII_THETN RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|20516673|gb|AAM24864.1| Thiamine biosynthesis ATP pyrophosphatase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 380

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 70/217 (32%), Gaps = 51/217 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V A ++ + G +V  V          S    S  A + V D  +V
Sbjct: 172 NGKATVLLSGGIDSPVAAWMMMKRGVEVEAVYFH-------SPPYTSDRAKEKVVDLCKV 224

Query: 80  CDTI--NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SV 132
                  +  +V  + +             Y        C     T+    ++      +
Sbjct: 225 LSQYGRGMRLHVVHFTDL--------QLEIYEK------CPARLTTIIMRRMMMKIAEKI 270

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
            +Q G+  L TG  +                         Q+      T   +    F P
Sbjct: 271 AQQNGSLALITGESLGQVAS--------------------QTIESLYVTNSSVSLPVFRP 310

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDIC--FVQQG 226
           L  M K  + D+A+++G         +D C  FV + 
Sbjct: 311 LIGMDKREIIDIAQKIGTYEISIRPYEDCCTIFVPKH 347


>gi|315186040|gb|EFU19803.1| PP-loop domain protein [Spirochaeta thermophila DSM 6578]
          Length = 276

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 76/228 (33%), Gaps = 41/228 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  RV++ +SGG DS V+A +  L+R      Y +  V L  +     S  +        
Sbjct: 40  EGDRVLLGISGGKDSLVMALILSLRRRWLPIHYHLEAVHL-NWQEYPISDEETD--RLAA 96

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +DA      I+V              +       +  G     C  C R  K   L + 
Sbjct: 97  YFDA------IDVPF----------TQITTTMFPGHYDG-QFN-CYLCARNRK-RLLFTY 137

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++    +LA GH++   +         R     M     Q +F    T      L  PL
Sbjct: 138 MKEHDIPILALGHHLDDIVETTLINMAMRGRLFTMMPV--QPFFGGLFT------LIRPL 189

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
            ++ +  VR    ++GL +         C  +       VK +   +A
Sbjct: 190 CEVPESQVRTAVEKLGLPVVKPD-----CPYKDTNLRLRVKPLVEQLA 232


>gi|315919673|ref|ZP_07915913.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693548|gb|EFS30383.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 248

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGRRARIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+   V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCEAYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|295148960|gb|ADF80960.1| putative LPS biosynthesis protein [Vibrio cholerae]
          Length = 379

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++         +    + + D       +
Sbjct: 71  IIGLSGGLDSSYAAYIAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLVDG------L 120

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V +++E  R  V      ++     P   +  +    FS L    R+ G   +
Sbjct: 121 GLDLYTEVVNWDEMRRLQV------AFLRAGIPDQDLVQDAAF-FSGLYKFARRHGIKHI 173

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 174 ITGSNFSTECCREPEEWGGY 193


>gi|262306099|gb|ACY45642.1| gln amidotransferase [Prokoenenia wheeleri]
          Length = 196

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 4/36 (11%)

Query: 22 RVVVAMSGGVDSSVVAALLK---RDGYDVIGVTLQL 54
          +V++ +SGGVDS+V AALL    ++G  VI V +  
Sbjct: 45 KVLMLLSGGVDSTVCAALLHKSLKEG-QVIAVHIDN 79


>gi|260171362|ref|ZP_05757774.1| hypothetical protein BacD2_05800 [Bacteroides sp. D2]
          Length = 255

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+ V   ++                 
Sbjct: 37  EGDKILIGLSGGKDSLALVELLGRRARIYKPRFSVVAVHVVMKNI------------PYQ 84

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+   V    +            P   +  +     PC     NR      
Sbjct: 85  SDTEYLKAHCEAYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 129

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 130 LFTVAKEHGCNKIALGHH 147


>gi|219886005|gb|ACL53377.1| unknown [Zea mays]
          Length = 419

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        +    A   C
Sbjct: 85  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGAIELEGLEKKAKASGAC 138

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F +  I P           Y  G +        R V    ++ V 
Sbjct: 139 Q-----LVVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDVA 187

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 188 KEVGADAVAHG 198


>gi|207092000|ref|ZP_03239787.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108158|ref|ZP_03242320.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 508

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   D +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIADAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +E F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKEVFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+  R L +E+G
Sbjct: 358 PLRELFKDEARLLGKELG 375


>gi|166030634|ref|ZP_02233463.1| hypothetical protein DORFOR_00300 [Dorea formicigenerans ATCC
           27755]
 gi|166029636|gb|EDR48393.1| hypothetical protein DORFOR_00300 [Dorea formicigenerans ATCC
           27755]
          Length = 408

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D++ V   LK   GYDVI   +             +C  G+++       
Sbjct: 4   KVVLAYSGGLDTTAVIPWLKETFGYDVICCCI-------------NCGQGEELDGLEERA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLGA 138
                   Y+ D  + F +  I+P   ++A  E                 L+ + R+ GA
Sbjct: 51  KMAGASKLYIEDIIDDFCDNYIMPCVKAHAVYENKYLLGTAMARPAIAKKLVEIARKEGA 110

Query: 139 DVLATG 144
             +  G
Sbjct: 111 VAICHG 116


>gi|110816207|sp|Q2IUE0|QUEC2_RHOP2 RecName: Full=7-cyano-7-deazaguanine synthase 2; AltName:
           Full=7-cyano-7-carbaguanine synthase 2; AltName:
           Full=PreQ(0) synthase 2; AltName: Full=Queuosine
           biosynthesis protein queC 2
          Length = 210

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 28/193 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V  SGG+DS+      K +G+DV                 G     + ++ A   C
Sbjct: 4   KKVLVLHSGGMDSTTCLLQAKAEGHDV----------ASLGIDYGQRLLVEMMF-AEGQC 52

Query: 81  DTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL-LSVTRQLG 137
           +  ++  +V   ++++  R   +           +  P     R + F  L  +    +G
Sbjct: 53  EKYSIPRHVINVNWQKAERQIPLNRSVEE--MAHSVSPAFLPGRNIVFLGLGHAHAAGIG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY-FLFATTQQQLCDLRFPLGDMK 196
           AD L  G          D   +              SY  +          L  PL  M 
Sbjct: 111 ADELQIGLNCVDFSGYPDCTTQFYD-----------SYCTMLNIGNPGGPKLVAPLLKMS 159

Query: 197 KESVRDLAREMGL 209
           K  +  LA  +GL
Sbjct: 160 KPEIARLASTLGL 172


>gi|86750585|ref|YP_487081.1| ExsB [Rhodopseudomonas palustris HaA2]
 gi|86573613|gb|ABD08170.1| ExsB [Rhodopseudomonas palustris HaA2]
          Length = 231

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 28/193 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V  SGG+DS+      K +G+DV                 G     + ++ A   C
Sbjct: 25  KKVLVLHSGGMDSTTCLLQAKAEGHDV----------ASLGIDYGQRLLVEMMF-AEGQC 73

Query: 81  DTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL-LSVTRQLG 137
           +  ++  +V   ++++  R   +           +  P     R + F  L  +    +G
Sbjct: 74  EKYSIPRHVINVNWQKAERQIPLNRSVEE--MAHSVSPAFLPGRNIVFLGLGHAHAAGIG 131

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY-FLFATTQQQLCDLRFPLGDMK 196
           AD L  G          D   +              SY  +          L  PL  M 
Sbjct: 132 ADELQIGLNCVDFSGYPDCTTQFYD-----------SYCTMLNIGNPGGPKLVAPLLKMS 180

Query: 197 KESVRDLAREMGL 209
           K  +  LA  +GL
Sbjct: 181 KPEIARLASTLGL 193


>gi|310657611|ref|YP_003935332.1| gmp synthetase [Clostridium sticklandii DSM 519]
 gi|308824389|emb|CBH20427.1| GMP synthetase (glutamine aminotransferase) [Clostridium
           sticklandii]
          Length = 509

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 50/203 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D + + A+SGGVDSSV A L+ +     IG  +T    +     K +G         D  
Sbjct: 214 DKKTLCALSGGVDSSVAAVLVHKA----IGDNLTCIFVDHGLLRKNEGD--------DVE 261

Query: 78  RVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVK----FSD 128
           R+            + + F   +I       F S   AG T     +  R +        
Sbjct: 262 RI------------FRDEFSMNLIRVNAQERFLSK-LAGVT---DPERKRKIIGEEFIRV 305

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
               +++LG  + L  G        V + G     + +           +    +     
Sbjct: 306 FEEESKKLGDVEFLVQG---TIYPDVIESGTDEAAVIKSHHN-------VGGLPEDMKLS 355

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR++  E+G+ 
Sbjct: 356 LVEPLRELFKDEVRNVGLELGIP 378


>gi|304315308|ref|YP_003850455.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588767|gb|ADL59142.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 290

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 76/232 (32%), Gaps = 37/232 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +   V VA+SGG DS +   +L        +++  +T                  G+ V 
Sbjct: 35  RGEHVAVALSGGKDSVLTLHVLSDLREELDFELTAIT---------VDEGIEGYRGEGVL 85

Query: 75  DARRVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            AR       V      + + F      V+  F S         PC+ C    ++  L  
Sbjct: 86  AARENARIRRVELIEKSFRDEFNFELEDVLEGFRS---------PCIPCGVFRRW-ILNR 135

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL--R 189
             R++GA  +ATGH         DD  +  IM       R  S F     +     +   
Sbjct: 136 TAREIGASKIATGH-------NMDDEVQSFIMSLARGDVRKFSKFGPKLQRIHPRMVPRI 188

Query: 190 FPLGDMKKESVRDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            PL    +E VR  A   ++    A    S          + + ++  + G+
Sbjct: 189 KPLWSTPEEDVRLWAELNDVKFHSAPCPYSSRSMRAGIRDFLNRIESDSPGV 240


>gi|301309337|ref|ZP_07215279.1| GMP synthase [Bacteroides sp. 20_3]
 gi|300832426|gb|EFK63054.1| GMP synthase [Bacteroides sp. 20_3]
          Length = 506

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSV A LL +  G ++  +                     
Sbjct: 205 ELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGKNLTCIF-----------VDHGLLRKN 253

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
           +  +  R  + + ++    + +++F   
Sbjct: 254 EFENVMRDYEHLGLNVIGVNAKDKFYKE 281


>gi|262383282|ref|ZP_06076418.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 2_1_33B]
 gi|262294180|gb|EEY82112.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 2_1_33B]
          Length = 506

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   D +V++A+SGGVDSSV A LL +  G ++  +                     
Sbjct: 205 ELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGKNLTCIF-----------VDHGLLRKN 253

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA 99
           +  +  R  + + ++    + +++F   
Sbjct: 254 EFENVMRDYEHLGLNVIGVNAKDKFYKE 281


>gi|161899032|ref|YP_315607.2| argininosuccinate synthase [Thiobacillus denitrificans ATCC 25259]
 gi|119361341|sp|Q3SHT1|ASSY_THIDA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 409

 Score = 49.4 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 67/217 (30%), Gaps = 70/217 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     Y+ D  E F    + P           Y  G +    +   R      L+
Sbjct: 53  LQFGIKPEQIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LI 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +    GAD +  G                           DQ              +RF
Sbjct: 107 EIVNATGADAICHG---------------------ATGKGNDQ--------------VRF 131

Query: 191 PLGDM-KKESVRDLA--REMGL----DIADKSDSQDI 220
            LG    K  V+ +A  RE  L     +   ++S  I
Sbjct: 132 ELGAYALKPDVKVIAPWREWDLLSREKLLAYAESHGI 168


>gi|307267037|ref|ZP_07548552.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917962|gb|EFN48221.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 235

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 30/131 (22%)

Query: 23  VVVAMSGGVDS---SVVAALLKRDG---YDVIGVTLQL-YNSRKASKRKGSCCAGQDVYD 75
           + V +SGG DS        LLK      +DV+G+ L L Y++   +  +  C        
Sbjct: 24  IAVGVSGGKDSITLLYGLHLLKNFYPVKFDVMGLMLTLGYDNFDPTPVENFCREK----- 78

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                    +  ++       +   I      Y   E   PC  C   ++   L +  ++
Sbjct: 79  --------GIPFFI-------KETDIKKIVFDYRKEE--NPCSLC-ANLRRGALNNFAKE 120

Query: 136 LGADVLATGHY 146
            G + +A  H+
Sbjct: 121 KGCNKVALAHH 131


>gi|284044933|ref|YP_003395273.1| NAD+ synthetase [Conexibacter woesei DSM 14684]
 gi|283949154|gb|ADB51898.1| NAD+ synthetase [Conexibacter woesei DSM 14684]
          Length = 587

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+ +SGGVDS++VA +     G D  GV + +  S  +S+            DAR++ 
Sbjct: 326 RVVLGLSGGVDSALVACVAVDALGPD--GVAVAVMPSPYSSQETQ--------ADARQLA 375

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA--GETPL---PCVDCNR---TVKFSDLLSV 132
           D + V  Y F+         I P   +YA+   +T     P +        ++ + L+++
Sbjct: 376 DNLGVERYEFN---------IQPAMRAYASTLADTFAGRKPDLTEENLQARIRGNLLMAL 426

Query: 133 TRQLGADVLATG 144
           + + G  VLATG
Sbjct: 427 SNKFGWLVLATG 438


>gi|213409906|ref|XP_002175723.1| GMP synthase [Schizosaccharomyces japonicus yFS275]
 gi|212003770|gb|EEB09430.1| GMP synthase [Schizosaccharomyces japonicus yFS275]
          Length = 539

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 35/199 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +  V+ A+SGGVDS+V A +LK                               + +A  V
Sbjct: 236 NEHVIGAVSGGVDSTVAAKVLKEA-------------IDDRFHAIMVDNGLLRLNEAEEV 282

Query: 80  ----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                + + +   V D  E F             AG T     +  R +  +  + V  +
Sbjct: 283 RQTLGEYLGIKLTVVDASEEFIGK---------LAGVT---DPEKKRKIIGNTFIHV-FE 329

Query: 136 LGADVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             A+ + +    +    +      D         P    +            +L  L  P
Sbjct: 330 REAERIVSETSGKVEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLADMKL-KLIEP 388

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L   +G++
Sbjct: 389 LRELFKDEVRQLGELLGIE 407


>gi|57169010|ref|ZP_00368138.1| exsB protein [Campylobacter coli RM2228]
 gi|57236928|ref|YP_178043.1| ExsB [Campylobacter jejuni RM1221]
 gi|86150544|ref|ZP_01068768.1| exsB protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152354|ref|ZP_01070564.1| exsB protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153997|ref|ZP_01072199.1| exsB protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|218561709|ref|YP_002343488.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|305432554|ref|ZP_07401715.1| transcription regulator ExsB [Campylobacter coli JV20]
 gi|315123629|ref|YP_004065633.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|81354271|sp|Q5HXE2|QUEC_CAMJR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|166218759|sp|P0C634|QUEC_CAMJE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|57019555|gb|EAL56245.1| exsB protein [Campylobacter coli RM2228]
 gi|57165732|gb|AAW34511.1| ExsB [Campylobacter jejuni RM1221]
 gi|85838996|gb|EAQ56261.1| exsB protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840651|gb|EAQ57903.1| exsB protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842535|gb|EAQ59748.1| exsB protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|112359415|emb|CAL34197.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284925319|gb|ADC27671.1| ExsB [Campylobacter jejuni subsp. jejuni IA3902]
 gi|304444265|gb|EFM36917.1| transcription regulator ExsB [Campylobacter coli JV20]
 gi|307746979|gb|ADN90249.1| Queuosine biosynthesis protein queC [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017351|gb|ADT65444.1| putative transcriptional regulatory protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315057457|gb|ADT71786.1| Queuosine Biosynthesis QueC ATPase [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315929942|gb|EFV09099.1| Transcriptional regulator ExsB [Campylobacter jejuni subsp. jejuni
           305]
          Length = 224

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 78/203 (38%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEQRTQEKEKECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN----RTVKF--SDLLSV- 132
             + V   Y+ D    F   +     +  +           +      V F     LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVCIK 162

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL  + K  + +LA +  + + 
Sbjct: 163 TPLVRLNKAKIVELALKENVPLE 185


>gi|288927700|ref|ZP_06421547.1| GMP synthase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330534|gb|EFC69118.1| GMP synthase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 514

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           D RV++ +SGGVDSSV AALL R 
Sbjct: 213 DDRVILGLSGGVDSSVCAALLNRA 236


>gi|302867888|ref|YP_003836525.1| asparagine synthase [Micromonospora aurantiaca ATCC 27029]
 gi|302570747|gb|ADL46949.1| asparagine synthase (glutamine-hydrolyzing) [Micromonospora
           aurantiaca ATCC 27029]
          Length = 536

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V V +SGG+DSS+     +    D + VT+                   DV  ARR+
Sbjct: 227 DLTVGVVLSGGLDSSLALLHARELHPDCVAVTI-------------GVPESPDVAYARRL 273

Query: 80  CDTINVSHYVFDYEER 95
              + V H V +   R
Sbjct: 274 AADLGVPHEVIELRPR 289


>gi|156325627|ref|XP_001618561.1| hypothetical protein NEMVEDRAFT_v1g154207 [Nematostella vectensis]
 gi|156199332|gb|EDO26461.1| predicted protein [Nematostella vectensis]
          Length = 318

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           D+ +   + +VV+ +SGGVDS+V A LL + 
Sbjct: 185 DMKEKIGNDKVVLGLSGGVDSTVAAVLLNKA 215


>gi|92114160|ref|YP_574088.1| ExsB [Chromohalobacter salexigens DSM 3043]
 gi|110816222|sp|Q1QVW9|QUEC_CHRSD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|91797250|gb|ABE59389.1| preQ(0) biosynthesis protein QueC [Chromohalobacter salexigens
          DSM 3043]
          Length = 251

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 17 NPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
          +P+D  + VV  SGG+DS  V     R G++V  ++                   +++  
Sbjct: 24 SPEDTTKAVVIYSGGMDSYTVLHRALRAGFEVHALSFHY-----------GQRHSRELET 72

Query: 76 ARRVCDTINVSHYVFDYEERF 96
          A  VC  + ++H V D     
Sbjct: 73 AHDVCQRLGIAHQVVDIRAIH 93


>gi|296116217|ref|ZP_06834835.1| argininosuccinate synthase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977323|gb|EFG84083.1| argininosuccinate synthase [Gluconacetobacter hansenii ATCC 23769]
          Length = 409

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR+ 
Sbjct: 7   KKVVLAYSGGLDTSVILRWLQTAYGCEVVTFT-------------ADLGQGEELEPARKK 53

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   V      D  E F    + P           Y  G +    +   R +       
Sbjct: 54  AEMFGVKEIFVEDLRETFVKDFVFPMFRANALYEGQYLLGTSIARPLIAQRQI------E 107

Query: 132 VTRQLGADVLATG 144
           +  Q+GAD +A G
Sbjct: 108 IAEQVGADAVAHG 120


>gi|295102547|emb|CBL00092.1| argininosuccinate synthase [Faecalibacterium prausnitzii L2-6]
          Length = 411

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +     G    G ++       
Sbjct: 7   KKVVLAYSGGLDTSIIIPWLKE-----------NYNNCEVIAVSGDVGQGTELDGLEEKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
                   YV D ++ F    I P          Y  G +   PC+          L  +
Sbjct: 56  KATGASKLYVLDLKKDFVENYIFPTLKFGAKYEDYLLGTSFARPCIA-------KALADI 108

Query: 133 TRQLGADVLATG 144
             + GAD +  G
Sbjct: 109 AIKEGADAICHG 120


>gi|224023947|ref|ZP_03642313.1| hypothetical protein BACCOPRO_00664 [Bacteroides coprophilus DSM
           18228]
 gi|224017169|gb|EEF75181.1| hypothetical protein BACCOPRO_00664 [Bacteroides coprophilus DSM
           18228]
          Length = 252

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 57/148 (38%)

Query: 19  KDMRVVVAMSGGVDS------------------SVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  R++V +SGG DS                  SVVAA        V+   ++       
Sbjct: 30  EGDRILVGLSGGKDSLALLELLARRSRIYKPKFSVVAA-------HVV---MKNI----- 74

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD- 119
                      D    R   +++ V +    YE  F      P   +  +     PC   
Sbjct: 75  -------AYESDQTYLREYAESLGVPY--VCYETEF-----DPSTDTRKS-----PCFLC 115

Query: 120 -CNRTVKFSDLLSVTRQLGADVLATGHY 146
             NR      L +V ++ G + +A GH+
Sbjct: 116 SWNRR---KALFTVAKEQGCNKIALGHH 140


>gi|198274776|ref|ZP_03207308.1| hypothetical protein BACPLE_00935 [Bacteroides plebeius DSM 17135]
 gi|198272223|gb|EDY96492.1| hypothetical protein BACPLE_00935 [Bacteroides plebeius DSM 17135]
          Length = 254

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 57/148 (38%)

Query: 19  KDMRVVVAMSGGVDS------------------SVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  R++V +SGG DS                  SVVAA        V+   ++       
Sbjct: 30  EGDRILVGLSGGKDSLALLELLARRSRIYKPKFSVVAA-------HVV---MKNI----- 74

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD- 119
                      D    R   +++ V +    YE  F      P   +  +     PC   
Sbjct: 75  -------AYESDQTYLREYAESLGVPY--VCYETEF-----DPSTDTRKS-----PCFLC 115

Query: 120 -CNRTVKFSDLLSVTRQLGADVLATGHY 146
             NR      L +V ++ G + +A GH+
Sbjct: 116 SWNRR---KALFTVAKEQGCNKIALGHH 140


>gi|158319585|ref|YP_001512092.1| GMP synthase, large subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139784|gb|ABW18096.1| GMP synthase, large subunit [Alkaliphilus oremlandii OhILAs]
          Length = 319

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           ++ +   + + + A+SGGVDS+V A L+ +     IG  +T    +     K +G     
Sbjct: 17  EIREKVGNKKAICALSGGVDSTVSAVLVHKA----IGDQLTCIFVDHGLMRKNEGD--WV 70

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFS 127
           +D++      +   ++    + +ERF      V  P       GE               
Sbjct: 71  EDLFK-----NQFKMNFIRVNAKERFFGQLAGVEDPEQKRKIIGEQF-----------IR 114

Query: 128 DLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                +++LG  D L  G      +  G DG                   +    +    
Sbjct: 115 VFEEESKKLGQFDFLVQGTIYSDVIESGKDGNANVKSHHN----------VGGLPEDVDF 164

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR    E+GL 
Sbjct: 165 QLLEPLRSLYKDEVRMTGEELGLA 188


>gi|91215963|ref|ZP_01252932.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychroflexus torquis ATCC 700755]
 gi|91185940|gb|EAS72314.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychroflexus torquis ATCC 700755]
          Length = 509

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           S    +   DL +   D +V++ +SGGVDS+V A LL +  G ++  + 
Sbjct: 197 SAFVDMTVADLKEKIGDDKVILGLSGGVDSTVAATLLHKAIGKNLHCIF 245


>gi|20090822|ref|NP_616897.1| hypothetical protein MA1974 [Methanosarcina acetivorans C2A]
 gi|19915889|gb|AAM05377.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 302

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 79/251 (31%), Gaps = 54/251 (21%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-------SKRKGSCCAG 70
            K+  + VA+SGG DSSV              V  ++  +R                   
Sbjct: 47  KKNDVIAVALSGGKDSSVALY-----------VMHKILGNRPDIQIVAVSIDEGIHGYRP 95

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             +  A+++ +T+ V H +  +++              A       C  C    K S L 
Sbjct: 96  HSLELAKKLTETLGVRHIIKSFKDEHGVT----MDELAAMDREKGTCSYCGVLRK-SILN 150

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            V  ++GA  L TGH +        D + + I+        D    +       +  L  
Sbjct: 151 RVALEIGATKLVTGHNL--------DDEAQTILL--NHFRGDMERMVRLAPPAAVEGLVL 200

Query: 191 ---PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
              PL ++ ++ V   A    L +                  D  +   AG AL G+I  
Sbjct: 201 RAKPLRNIPEKEVALYALINSLPV------------------DFSECPYAGEALRGEIRE 242

Query: 248 LNGQILGRHNG 258
           L       H G
Sbjct: 243 LLNNFETGHPG 253


>gi|18978207|ref|NP_579564.1| hypothetical protein PF1835 [Pyrococcus furiosus DSM 3638]
 gi|18894018|gb|AAL81959.1| putative thiamin biosynthesis protein thiI [Pyrococcus furiosus DSM
           3638]
          Length = 201

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 57/201 (28%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VV  +S G+DS V   L+   G +V  +  +     +  +RK            R+V 
Sbjct: 1   MKVVALLSSGIDSPVAIHLMASRGVEVYPLHFR---QDEVKERK-----------VRKVV 46

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--------- 131
             +         +E     V  P   +  A E   P  +  + +K               
Sbjct: 47  KKL---------QEIHGEKVKDP--HTVNAYEVQAPVFEKLKEIKKGKWTCVFCKYTMYI 95

Query: 132 ----VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                 +++GA  + TG  +                        D    +   T+  +  
Sbjct: 96  VAESYAKKVGASAIITGDSLGQV----------------ASQTLDNLLVISTATKLPVIR 139

Query: 188 LRFPLGDMKKESVRDLAREMG 208
              PL  + KE +  +A+E+G
Sbjct: 140 ---PLIGLDKEEIVKIAKEIG 157


>gi|15669121|ref|NP_247926.1| hypothetical protein MJ_0931 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501552|sp|Q58341|THII_METJA RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|1591602|gb|AAB98933.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 381

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+  +S G+DS V A ++ R G   + + L++              + + +   R+
Sbjct: 187 SQGKVLCLISDGIDSPVAAFMMIRRGCRAVLLHLKM--------------SEEALNKVRK 232

Query: 79  VCDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSV 132
           + + +      +   V+DY++   + V      S         C+ C R + K ++    
Sbjct: 233 IVEVLSDYDTELEFVVYDYKKDIEDIVEK--LKSIKKEN--YTCIFCKRKMLKVAE--KY 286

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + L  D + TG  +                       ++            L     PL
Sbjct: 287 AKYLDCDAIVTGDNLGQV---------------ASQTLKNLRVISENINYPILR----PL 327

Query: 193 GDMKKESVRDLAREMG 208
             + K  +  +A+E+G
Sbjct: 328 IGLDKNDIVKIAKEIG 343


>gi|298488737|ref|ZP_07006766.1| Argininosuccinate synthase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156810|gb|EFH97901.1| Argininosuccinate synthase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 405

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKAQ 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AMGVKEIYIDDLREEFVRYFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
            + GAD ++ G
Sbjct: 108 NETGADAISHG 118


>gi|315505707|ref|YP_004084594.1| asparagine synthase (glutamine-hydrolyzing) [Micromonospora sp. L5]
 gi|315412326|gb|ADU10443.1| asparagine synthase (glutamine-hydrolyzing) [Micromonospora sp. L5]
          Length = 536

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V V +SGG+DSS+     +    D + VT+                   DV  ARR+
Sbjct: 227 DLTVGVVLSGGLDSSLALLHARELHPDCVAVTI-------------GVPESPDVAYARRL 273

Query: 80  CDTINVSHYVFDYEER 95
              + V H V +   R
Sbjct: 274 AADLGVPHEVIELRPR 289


>gi|218246420|ref|YP_002371791.1| ExsB family protein [Cyanothece sp. PCC 8801]
 gi|218166898|gb|ACK65635.1| ExsB family protein [Cyanothece sp. PCC 8801]
          Length = 274

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 45/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGG+DS++VA +     YDV+G      +   A          +++ +A+    TI
Sbjct: 20  LIAYSGGIDSTLVAKIA----YDVLG------DRALAITAVSPSLLPEELEEAKIQAATI 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + H + +  E                      C  C   +    L  +  + G   +  
Sbjct: 70  GIKHELIETHEMDNPNYTSNPV---------NRCYFCKSEL-HDTLKPLAIKRGYAYIVD 119

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G      +   D    R  +    +                    R PL +  + K  +R
Sbjct: 120 G------VNADDLQDYRPGIQAAKERG-----------------ARSPLAEVGLTKTEIR 156

Query: 202 DLAREMGLDIADKS 215
            L++++GL   DK 
Sbjct: 157 QLSQQLGLPWWDKP 170


>gi|168001078|ref|XP_001753242.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695528|gb|EDQ81871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 542

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 63/221 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSC-CAGQDVYDAR 77
           D  V+ A+SGGVDS+V A L+ R  G  +  V +            G C    ++   A 
Sbjct: 235 DDHVICALSGGVDSTVAATLVHRAIGDRLHCVFVDN----------GLCRYKERERVMAT 284

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            V   +++     D  E+F +    V+ P                              R
Sbjct: 285 FV-KDLHLPVTCVDATEQFLSKLKGVVDP---------------------------ERKR 316

Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIM------------CRPMDLERDQSYF----- 176
           + +GA+ +A       RL   + GK    +            C P    +  S+      
Sbjct: 317 KIIGAEFIAVFDEFSHRLER-EIGKMPAFLVQGTLYPDVIESCPPPGSGKSHSHTIKSHH 375

Query: 177 -LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSD 216
            +    +     L  PL  + K+ VR++   + + ++    
Sbjct: 376 NVGGLPENMKLKLVEPLKWLFKDEVREMGALLDVPVSFLKR 416


>gi|289582000|ref|YP_003480466.1| exsB protein [Natrialba magadii ATCC 43099]
 gi|289531553|gb|ADD05904.1| exsB protein [Natrialba magadii ATCC 43099]
          Length = 251

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N  + D    + R VV +SGG+DS+  AA  +  GYD+  +              G    
Sbjct: 12 NGTETDATDTNNRAVVLLSGGMDSATAAAEARSQGYDIYALH----------TSYGQRTE 61

Query: 70 GQDVYDARRVCDTINVSHYVFDY 92
           +++  AR++ D         D+
Sbjct: 62 TRELECARQLAD----EFEANDF 80


>gi|16332301|ref|NP_443029.1| argininosuccinate synthase [Synechocystis sp. PCC 6803]
 gi|2492989|sp|P77973|ASSY_SYNY3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|1653931|dbj|BAA18841.1| argininosuccinate synthetase [Synechocystis sp. PCC 6803]
          Length = 400

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +VV+A SGGVD+SV    L+              +   +          G ++   +
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLMHE------------WGVEEVITLAADLGQGDELGPIQ 50

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
                   V   V D +E F          + A  E   P      R +    L+    +
Sbjct: 51  EKALRCGAVESLVIDGKEEFVKEYAFRSIQANALYENRYPLSTALARPLIAKMLVEAAEK 110

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 111 YGADAVAHG 119


>gi|302882329|ref|XP_003040075.1| hypothetical protein NECHADRAFT_64031 [Nectria haematococca mpVI
           77-13-4]
 gi|256720942|gb|EEU34362.1| hypothetical protein NECHADRAFT_64031 [Nectria haematococca mpVI
           77-13-4]
          Length = 542

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 42/204 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR- 78
           V+  +SGGVDS+V A L++   G  +  IGV                C    +  + ++ 
Sbjct: 234 VIGGVSGGVDSTVGATLMREAIGDRFHAIGV-------------NNGCMRLNEFEEVKKN 280

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
           + D + ++ +V +  E F             AG T     +  R +  S  + V      
Sbjct: 281 LRDHLGINLHVVEAGELFLGR---------LAGVT---DPEKKRKIIGSTFIDVFEQEAI 328

Query: 135 QLGADVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---- 186
           ++  +   T +  R   ++      D         P    +   + +    ++ +     
Sbjct: 329 RIEKEAENTPNSGRVEWFLQGTLYPDVIESLSWRGPSATIKTH-HNVGGLPERMMKGQGL 387

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR + R++G+ 
Sbjct: 388 RLIEPLRLLFKDEVRAIGRQLGIH 411


>gi|195637066|gb|ACG38001.1| argininosuccinate synthase [Zea mays]
          Length = 446

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        +    A   C
Sbjct: 50  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGAIELEGLEKKAKASGAC 103

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F +  I P           Y  G +        R V    ++ V 
Sbjct: 104 Q-----LVVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDVA 152

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 153 KEVGADAVAHG 163


>gi|226943527|ref|YP_002798600.1| argininosuccinate synthase [Azotobacter vinelandii DJ]
 gi|259585350|sp|C1DQV2|ASSY_AZOVD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226718454|gb|ACO77625.1| Argininosuccinate synthase [Azotobacter vinelandii DJ]
          Length = 406

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G++V  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YNCEVVTF-----------TADLGQGEEVEPARAKA 52

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             + V      D  E F    + P           Y  G +    +   R      L+ +
Sbjct: 53  QALGVKEIFIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEI 106

Query: 133 TRQLGADVLATG 144
               GAD ++ G
Sbjct: 107 ANATGADAISHG 118


>gi|260592231|ref|ZP_05857689.1| GMP synthase [Prevotella veroralis F0319]
 gi|260535865|gb|EEX18482.1| GMP synthase [Prevotella veroralis F0319]
          Length = 514

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 64/199 (32%), Gaps = 43/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGGVDSSV A LL +  G ++  +                    Q V DA +
Sbjct: 213 NDRVILGLSGGVDSSVCATLLNKAIGKNLTCIF--------VDHGMLRKNEFQKVMDAYK 264

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               + ++    D  E+F      V  P       G   +     N   K        + 
Sbjct: 265 ---GLGLNVIGVDASEKFFKDLEGVSDPEEKRKIIGRDFVEVF--NAEAK--------KI 311

Query: 136 LGADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             A  LA        I S    G   K                  +    ++    L  P
Sbjct: 312 TDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPKEMHLQLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR +  EMG+ 
Sbjct: 358 LRWLFKDEVRRVGHEMGMP 376


>gi|239917925|ref|YP_002957483.1| argininosuccinate synthase [Micrococcus luteus NCTC 2665]
 gi|259585364|sp|C5CAM5|ASSY_MICLC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|239839132|gb|ACS30929.1| argininosuccinate synthase [Micrococcus luteus NCTC 2665]
          Length = 413

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+++A SGG+D+SV    +        G       +   +        G+ +   R+   
Sbjct: 4   RIILAYSGGLDTSVAIGWIAEA----TG-------AEVVAVAVDVGQGGESLETIRQRAL 52

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D  + F     +P   + A      P V   +R V    L++  RQ GA 
Sbjct: 53  DCGAVEAYVADARDEFAEQYCMPTLKANALYMDAYPLVSAISRPVISRHLVAAARQFGAS 112

Query: 140 VLATG 144
            +A G
Sbjct: 113 TVAHG 117


>gi|183219514|ref|YP_001837510.1| argininosuccinate synthase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909656|ref|YP_001961211.1| argininosuccinate synthase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|229889878|sp|B0S9J6|ASSY_LEPBA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|229889879|sp|B0SJR2|ASSY_LEPBP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|167774332|gb|ABZ92633.1| Argininosuccinate synthase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777936|gb|ABZ96234.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 402

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS--KRKGSCCAG 70
           + + P   ++V+A SGG+D+SV+ A LK   G +VI     +    + +  + KG     
Sbjct: 1   MKEKPAPKKIVLAYSGGLDTSVILAWLKDTYGCEVIAFCADVGQKEELTGLEEKGKNTGA 60

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDL 129
             V              Y+ D    F    I P     A  E          R +    +
Sbjct: 61  SKV--------------YIQDLRLEFARDFIYPAIRGNAIYEMRYLLGTSLARPLIAKAM 106

Query: 130 LSVTRQLGADVLATG 144
             V ++ GAD  + G
Sbjct: 107 ADVAKKEGADAFSHG 121


>gi|119953308|ref|YP_945517.1| glutamine-dependent NAD(+) synthetase [Borrelia turicatae 91E135]
 gi|119862079|gb|AAX17847.1| glutamine-dependent NAD(+) synthetase [Borrelia turicatae 91E135]
          Length = 522

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS+VVA +     G + V+G+++           KGS      V+DA+ +
Sbjct: 265 KVHLGVSGGIDSAVVAYIACAALGAHRVVGISM-----PSRFSSKGS------VFDAKEL 313

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
              +         E  F    ++ F + Y  
Sbjct: 314 ARGLGFKLIDMPIEGMF--QFVLEFFNGYFN 342


>gi|124027539|ref|YP_001012859.1| phosphoadenosine 5'-phosphosulfate reductase [Hyperthermus
           butylicus DSM 5456]
 gi|123978233|gb|ABM80514.1| phosphoadenosine 5'-phosphosulfate reductase [Hyperthermus
           butylicus DSM 5456]
          Length = 660

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 51/156 (32%), Gaps = 32/156 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA+SGG DS+V AAL  + G             R+A          + +  A RV  T
Sbjct: 246 VMVAVSGGKDSTVAAALAVKAGL------------RRAYFFDTGIEFPETIETAHRVAQT 293

Query: 83  INVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +          F     +  P A  Y           C + VKF+ L    + L    
Sbjct: 294 LGLDMAEISAGNTFWRALRLFGPPARDYR---------WCCKVVKFAPLAKALKPLVKTR 344

Query: 141 LAT-----GHYIRSRLYVG----DDGKRRRIMCRPM 167
           L T     G+    R   G         RR +    
Sbjct: 345 LVTVTGQRGYESTQRAMAGKLSPSATTGRRDLLAAP 380


>gi|86608724|ref|YP_477486.1| NAD+ synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557266|gb|ABD02223.1| NAD+ synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 558

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 29/185 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS+V A +     G + V+GV +                +   + DA ++ 
Sbjct: 302 VLLGLSGGIDSAVTAVIAADALGPERVLGVLM-----------PSPYSSPGSLTDAYQLA 350

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR---TVKFSDLLSVTR 134
             + +      +    E +   +  PF         P P +        ++ + L++++ 
Sbjct: 351 QNLGIPTLKLPIQSIMESYHQLLAEPF------AGLP-PDITEENLQSRIRGTLLMALSN 403

Query: 135 QLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + G  +L TG+     + Y    G     +    D+ +   Y L     +Q   +  PL 
Sbjct: 404 KFGRLLLTTGNKSELAVGYCTIYGDMSGGLAVISDVPKTWVYRLARWINRQQERI--PLA 461

Query: 194 DMKKE 198
            + K 
Sbjct: 462 TLTKP 466


>gi|312128625|ref|YP_003993499.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778644|gb|ADQ08130.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 303

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +++V +SGG DS +    +L  +GY+V G+ +      + S +              
Sbjct: 46  KKDKILVVISGGKDS-MALWHILASEGYNVTGMYI-NLGIGQYSDKSQQV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D ++ +   +     S      T   C  C   +K      V    G
Sbjct: 96  SFAQKNGLELIVKDIKKEYGLDI--YKLSKLLKRST---CSICGS-IKRYLFNKVAYDGG 149

Query: 138 ADVLATGHYI 147
              +ATGH +
Sbjct: 150 FSAVATGHNL 159


>gi|229816665|ref|ZP_04446954.1| hypothetical protein COLINT_03714 [Collinsella intestinalis DSM
           13280]
 gi|229807793|gb|EEP43606.1| hypothetical protein COLINT_03714 [Collinsella intestinalis DSM
           13280]
          Length = 327

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 46/199 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + ++A+SGGVDSSVVAALL +  G   I V          +         + V D  R
Sbjct: 36  DKKALLALSGGVDSSVVAALLIKAIGKQFICVH--------VNHGLMRKGESEQVVDVFR 87

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLS 131
             + ++ +    D  +RF    + V  P               +  R +           
Sbjct: 88  --NQLDANLVYVDAIDRFLSLLDGVAEP---------------EAKRKIIGAEFIRVFEE 130

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             R++G             +     G     +    D  +            Q   L  P
Sbjct: 131 EARKVG-----------DEVSFLAQGTIYPDILES-DGVKAHHNVGGLPDDLQFE-LCEP 177

Query: 192 LGDMKKESVRDLAREMGLD 210
           +  + K+ VR + RE+GL 
Sbjct: 178 VRLLYKDEVRVVGRELGLP 196


>gi|210612743|ref|ZP_03289458.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787]
 gi|210151436|gb|EEA82444.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787]
          Length = 244

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 20/130 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDA 76
           +   + V +SGG DS     LL    Y + G+  + Y +    ++          D+   
Sbjct: 22  EGDHIAVGISGGKDSLT---LL----YALHGLK-RFYPNKFELSAITVDLGYEEFDLDPV 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +C  + V + V           I              PC  C +  K   L    +++
Sbjct: 74  HELCQELGVPYKVV-------KTDIAHILFEERKES--NPCSLCAKMRK-GALNDAVKEM 123

Query: 137 GADVLATGHY 146
           G + +A  H+
Sbjct: 124 GCNKVAYAHH 133


>gi|226502708|ref|NP_001141957.1| hypothetical protein LOC100274106 [Zea mays]
 gi|194706576|gb|ACF87372.1| unknown [Zea mays]
          Length = 446

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        +    A   C
Sbjct: 50  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGAIELEGLEKKAKASGAC 103

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F +  I P           Y  G +        R V    ++ V 
Sbjct: 104 Q-----LVVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDVA 152

Query: 134 RQLGADVLATG 144
           +++GAD +A G
Sbjct: 153 KEVGADAVAHG 163


>gi|110816227|sp|Q5L1C0|QUEC_GEOKA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 221

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 25/191 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV  SGG DS+      K+   +V  VT   ++  +  +R+        +  A+ + D
Sbjct: 5   KAVVVFSGGQDSTTCLFWAKKQFGEVEAVT---FDYGQRHRRE--------IDVAQAIAD 53

Query: 82  TINVSHYVFDYEERFR---NAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + V H V D     +   NA+     +     GE P   VD    +  S      +Q G
Sbjct: 54  ELGVRHTVLDLSLLGQLAPNALTRRDIAIEQKKGELPTTFVDGRNLLFLSFAAVFAKQRG 113

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  + TG           D       CR + ++        A   + +     PL  + K
Sbjct: 114 ARHIVTG-------VCETDFSGYPD-CRDVFIKSLNVTLNLAMDYEFVIHT--PLMWLTK 163

Query: 198 ESVRDLAREMG 208
                LA E+G
Sbjct: 164 AETWKLADELG 174


>gi|28377060|ref|NP_783952.1| hypothetical protein lp_0109 [Lactobacillus plantarum WCFS1]
 gi|300766797|ref|ZP_07076710.1| PP-loop superfamily ATP-binding protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28269891|emb|CAD62790.1| unknown [Lactobacillus plantarum WCFS1]
 gi|300495335|gb|EFK30490.1| PP-loop superfamily ATP-binding protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 276

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 40/197 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV VA SGG+DS++V  +      DV+G      ++  A          ++   A  + 
Sbjct: 19  QRVTVAFSGGIDSTLVLKMAL----DVLG-----RDNVTAVVANSELFTDEEFDKAMSLA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +  +          +   +   +  +    TP       +   +S L  +    G+  
Sbjct: 70  EELGANV---------QGTTLDYLSDDHIKNNTPDSWYYAKKMF-YSRLNDIAANNGSAA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G      +   D+   R  +    +                         D  K  V
Sbjct: 120 VLDG------MIKNDENDYRPGLKARSEAG---------------ARSLLQEADFFKTDV 158

Query: 201 RDLAREMGLDIADKSDS 217
           R LA+E+GL   +K  S
Sbjct: 159 RALAQELGLTNWNKVAS 175


>gi|312137424|ref|YP_004004761.1| argininosuccinate synthase [Methanothermus fervidus DSM 2088]
 gi|311225143|gb|ADP77999.1| argininosuccinate synthase [Methanothermus fervidus DSM 2088]
          Length = 390

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 36/197 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V+A SGG+D++V   LL+             YN    +         +D+  A  +  
Sbjct: 3   KAVLAFSGGLDTTVCIKLLEEK-----------YNMNVITACVDVGQDKEDIKQAETIAK 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140
             +  HY  D ++ F    +     + A  E   P      R +    ++ +  +  ADV
Sbjct: 52  KYSYKHYTIDAKDEFVEEYVYRAIKANAIYE-GYPLSTALARPLIAKKVVEIAEKEKADV 110

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKE 198
           +A G                   C       DQ  F         C +  P+ D  + +E
Sbjct: 111 IAHG-------------------CTGK--GNDQFRFESTIRAISDCKIVAPIRDLNLTRE 149

Query: 199 SVRDLAREMGLDIADKS 215
                A+E G++I    
Sbjct: 150 EEIKYAKEHGIEIPSGK 166


>gi|213409796|ref|XP_002175668.1| argininosuccinate synthase [Schizosaccharomyces japonicus yFS275]
 gi|212003715|gb|EEB09375.1| argininosuccinate synthase [Schizosaccharomyces japonicus yFS275]
          Length = 411

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R V+A SGG+D+S + A L   G++VI   +                  +D   AR   
Sbjct: 7   KRCVLAYSGGLDTSCILAWLIEQGWEVI-CYMAN------------VGQEEDWEAAREKA 53

Query: 81  DTINV-SHYVFDYEERF-RNAVI 101
             +     Y+ D  E F R+ VI
Sbjct: 54  LKVGAKKVYIEDLREEFIRDTVI 76


>gi|167750534|ref|ZP_02422661.1| hypothetical protein EUBSIR_01510 [Eubacterium siraeum DSM 15702]
 gi|167656460|gb|EDS00590.1| hypothetical protein EUBSIR_01510 [Eubacterium siraeum DSM 15702]
          Length = 377

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA- 76
            ++ R+ V +SGG DS ++A L +            L+                    A 
Sbjct: 133 KENDRIAVCISGGKDSMLMAKLFQE-----------LHRHSDFPFEVKFIVMDPGYSTAN 181

Query: 77  RRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           R V       + +   +      F + +     S Y   ++  PC  C   ++   L + 
Sbjct: 182 RNVIEENARKLKIPIEI------FESDIFD---SVYNIEKS--PCYLC-ARMRRGHLYNY 229

Query: 133 TRQLGADVLATGHY 146
            + LG + +A GH+
Sbjct: 230 AKSLGCNKIALGHH 243


>gi|125536197|gb|EAY82685.1| hypothetical protein OsI_37900 [Oryza sativa Indica Group]
          Length = 481

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 27/132 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +VV+A SGG+D+SV+   L+ + G +V+  T        A   +G          A+   
Sbjct: 85  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT--------ADVGQGDIELEGLEKKAKASG 136

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
              +     V D +E F +  I P           Y  G +        R V    ++ V
Sbjct: 137 ASQL----VVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDV 186

Query: 133 TRQLGADVLATG 144
            +++GAD +A G
Sbjct: 187 AKEVGADAVAHG 198


>gi|115487944|ref|NP_001066459.1| Os12g0235800 [Oryza sativa Japonica Group]
 gi|77554103|gb|ABA96899.1| Argininosuccinate synthase, chloroplast precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113648966|dbj|BAF29478.1| Os12g0235800 [Oryza sativa Japonica Group]
 gi|125578921|gb|EAZ20067.1| hypothetical protein OsJ_35666 [Oryza sativa Japonica Group]
          Length = 481

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 27/132 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +VV+A SGG+D+SV+   L+ + G +V+  T        A   +G          A+   
Sbjct: 85  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT--------ADVGQGDIELEGLEKKAKASG 136

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
              +     V D +E F +  I P           Y  G +        R V    ++ V
Sbjct: 137 ASQL----VVKDLKEEFVSEYIYPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDV 186

Query: 133 TRQLGADVLATG 144
            +++GAD +A G
Sbjct: 187 AKEVGADAVAHG 198


>gi|313638402|gb|EFS03604.1| GMP synthase (glutamine-hydrolyzing) [Listeria seeligeri FSL
           S4-171]
          Length = 414

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMETLQGEFNMNIIKVDAKKRFMDKLAGVSEPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|159905702|ref|YP_001549364.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           maripaludis C6]
 gi|159887195|gb|ABX02132.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           maripaludis C6]
          Length = 383

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 38/205 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+V +S G+DS V A ++ + G  ++ + ++  +      +K +        +A+ V
Sbjct: 181 QGRVLVLLSDGIDSPVSAFMMAKRGCKLLLLHMKTSDEGLEKTQKLADVLSDFDPEAKFV 240

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                      D++E      I   A           C+ C + +         +    D
Sbjct: 241 ---------YVDFKEELTK--IK--AELTEINRDKYTCLYCKKYM-LKLAEKYAKWHKCD 286

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-LRFPLGDMKKE 198
            +            GD+  +             Q+        + +   +  PL    K 
Sbjct: 287 AI----------INGDNMGQVAS----------QTLKNLRVISEGIDYPILRPLIGFDKV 326

Query: 199 SVRDLAREMGLDIADKSDSQDI-CF 222
            + D+AR++G    D S S+++ CF
Sbjct: 327 EIMDIARKIG--TFDISTSKEVSCF 349


>gi|124485194|ref|YP_001029810.1| hypothetical protein Mlab_0367 [Methanocorpusculum labreanum Z]
 gi|124362735|gb|ABN06543.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocorpusculum labreanum Z]
          Length = 404

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 43/193 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVI--GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R V  +S G+DS V A L+ R G  V+  GV +         +  GS      + + R +
Sbjct: 178 RAVALLSAGIDSPVAAWLMMRRG--VVISGVFM------DGGRWAGSATRDLAMDNVRIL 229

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              C    +  ++ +  E F +A++      Y        C+ C R +       V ++ 
Sbjct: 230 STWCPGRGLPLWIVNL-EPFFDAMMTACDRHYT-------CLFCKRFM-MRVAEEVAKEN 280

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-LRFPLGDM 195
             + + +G  +                         Q+        + +   +  PL   
Sbjct: 281 KMEGIVSGENLGQVAS--------------------QTLQNMGVITESVKLPVLRPLLTY 320

Query: 196 KKESVRDLAREMG 208
            KE +  ++R +G
Sbjct: 321 DKEEIVAISRRIG 333


>gi|148555877|ref|YP_001263459.1| argininosuccinate synthase [Sphingomonas wittichii RW1]
 gi|172048260|sp|A5VAK5|ASSY_SPHWW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|148501067|gb|ABQ69321.1| argininosuccinate synthase [Sphingomonas wittichii RW1]
          Length = 405

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RVV+A SGG+D+SV+   L++  Y    VT                  G+++  AR   
Sbjct: 5   KRVVLAFSGGLDTSVILKWLQQT-YQCEVVTF-----------TADLGQGEELEPARAKA 52

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + V        D  E F    + P           Y  G +    +   R +      
Sbjct: 53  KLMGVPDEHIFIDDLREEFVKDYVFPMMRGNALYEGLYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R +GAD ++ G
Sbjct: 107 EIARAVGADAVSHG 120


>gi|326389916|ref|ZP_08211479.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993976|gb|EGD52405.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 235

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 30/131 (22%)

Query: 23  VVVAMSGGVDS---SVVAALLKRDG---YDVIGVTLQL-YNSRKASKRKGSCCAGQDVYD 75
           + V +SGG DS        LLK      +DV+G+ L L Y++   +  +  C        
Sbjct: 24  IAVGVSGGKDSITLLYGLHLLKNFYPVKFDVMGLMLTLGYDNFDPTPVENFCREK----- 78

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                    +  ++       +   I      Y   E   PC  C   ++   L +  ++
Sbjct: 79  --------GIPFFI-------KETDIKKIVFDYRKEE--NPCSLC-ANLRRGALNNFAKE 120

Query: 136 LGADVLATGHY 146
            G + +A  H+
Sbjct: 121 KGCNKVALAHH 131


>gi|308067527|ref|YP_003869132.1| GMP synthase (glutamin-hydrolyzing) [Paenibacillus polymyxa E681]
 gi|305856806|gb|ADM68594.1| GMP synthase (glutamin-hydrolyzing) [Paenibacillus polymyxa E681]
          Length = 512

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 70/205 (34%), Gaps = 40/205 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D +V+ A+SGGVDSSVVA L+ +     IG  L          RKG       
Sbjct: 210 EIRQQVGDKKVLCALSGGVDSSVVAMLIHKA----IGDQLTCMFIDHGLLRKGE------ 259

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFS 127
              A  V +T         +  +F   V+       F S  A  + P       R +  +
Sbjct: 260 ---AESVMET---------FVGKFDMKVVKIDARERFLSKLAGVDDPE----QKRKIIGN 303

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           + + V  +  +         +  LY    + G       +           +    +   
Sbjct: 304 EFIYVFEEESSQFDDFTFLAQGTLYTDIVESGTATAQTIKSHHN-------VGGLPENMK 356

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL  + K+ VR +  E GL 
Sbjct: 357 FKLIEPLNALFKDEVRKVGEECGLP 381


>gi|269303137|gb|ACZ33237.1| PP-loop family protein [Chlamydophila pneumoniae LPCoLN]
          Length = 244

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 66/197 (33%), Gaps = 44/197 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR---DGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++VVA+SGG DS  +  +LK     G+   D+  V             K SC A  +   
Sbjct: 36  KIVVALSGGKDSLTLLLMLKAISGRGFPDLDLHAV---------NIGGKYSCGAEVNKPY 86

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVT 133
             R+CD + +                 P+A       TP   PC    R +    L    
Sbjct: 87  LTRICDQLCIPFRTIP----------SPYAPE-----TPECYPCSQARRRL----LFQAA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +++GA  +A GH+    +         +     M    D  +F        L  L F   
Sbjct: 128 KEIGASAIAFGHHRDDLVQTALLNLLHKAEFAGMLPVLDMVHFGVTI----LRPLIFTPE 183

Query: 194 DMKKESVRDLAREMGLD 210
                 +R  A+E G  
Sbjct: 184 FW----IRKFAKENGFA 196


>gi|15618181|ref|NP_224466.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|15835796|ref|NP_300320.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|16752779|ref|NP_445047.1| hypothetical protein CP0500 [Chlamydophila pneumoniae AR39]
 gi|33241603|ref|NP_876544.1| YdaO [Chlamydophila pneumoniae TW-183]
 gi|4376533|gb|AAD18410.1| PP-Loop Superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189418|gb|AAF38329.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978634|dbj|BAA98471.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236111|gb|AAP98201.1| YdaO [Chlamydophila pneumoniae TW-183]
          Length = 244

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 66/197 (33%), Gaps = 44/197 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR---DGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++VVA+SGG DS  +  +LK     G+   D+  V             K SC A  +   
Sbjct: 36  KIVVALSGGKDSLTLLLMLKAISGRGFPDLDLHAV---------NIGGKYSCGAEVNKPY 86

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVT 133
             R+CD + +                 P+A       TP   PC    R +    L    
Sbjct: 87  LTRICDQLCIPFRTIP----------SPYAPE-----TPECYPCSQARRRL----LFQAA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +++GA  +A GH+    +         +     M    D  +F        L  L F   
Sbjct: 128 KEIGASAIAFGHHRDDLVQTALLNLLHKAEFAGMLPVLDMVHFGVTI----LRPLIFTPE 183

Query: 194 DMKKESVRDLAREMGLD 210
                 +R  A+E G  
Sbjct: 184 FW----IRKFAKENGFA 196


>gi|331083984|ref|ZP_08333091.1| hypothetical protein HMPREF0992_02015 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402346|gb|EGG81916.1| hypothetical protein HMPREF0992_02015 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 386

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 30/135 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  ++ V +SGG DS ++A L +    +     DV+ + +                  +
Sbjct: 135 KEGDKIAVCISGGKDSMLMAKLFQELQKHRKVNFDVVFLVM-----DPGYNETNRKVIEE 189

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +          +N+   +      F   +               PC  C   ++   L S
Sbjct: 190 N-------ARLLNIPITI------FETNIFE-TVYEIEK----SPCYLC-ARMRRGYLYS 230

Query: 132 VTRQLGADVLATGHY 146
             ++LG + +A GH+
Sbjct: 231 KAKELGCNKIALGHH 245


>gi|317056300|ref|YP_004104767.1| NAD+ synthetase [Ruminococcus albus 7]
 gi|315448569|gb|ADU22133.1| NAD+ synthetase [Ruminococcus albus 7]
          Length = 249

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 80/253 (31%), Gaps = 51/253 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + V+ +SGG DSSV AAL     G D VIGV +      +  +    C         ++
Sbjct: 29  TKAVLGISGGKDSSVAAALCVEALGKDRVIGVLM-----PQGEQFDIDCS--------KK 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQL 136
           +   + +  Y  +         +                   N    ++ S L +V   +
Sbjct: 76  LVSHLGIKSYEINVGST-----VSALLGEIGNALEVSEQARVNTPPRIRMSTLYAVAACV 130

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G  V+ T         + +D        +  D   D S                PL ++ 
Sbjct: 131 GGRVVNT-------CNMSEDWVGYS--TKFGDAAGDFS----------------PLSELC 165

Query: 197 KESVRDLAREMGLDIADKSDS--QDIC-FVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
              V  +  E+GL       +    +C    +         +++ I  E D+     ++ 
Sbjct: 166 VREVIAIGDELGLPYELTHKTPIDGLCGKTDEDNLGFTYAELDSYIRKETDLSDKP-ELK 224

Query: 254 GRHNGIINYTIGQ 266
            R +G+    + +
Sbjct: 225 ARIDGMHARNLHK 237


>gi|218437376|ref|YP_002375705.1| argininosuccinate synthase [Cyanothece sp. PCC 7424]
 gi|218170104|gb|ACK68837.1| Argininosuccinate synthase [Cyanothece sp. PCC 7424]
          Length = 401

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 23/130 (17%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGGVD+SV    L+K  G  +VI  TL                 G ++   +  
Sbjct: 6   KVVLAYSGGVDTSVCIPYLIKEWGVQEVI--TLA-----------ADLGQGDELGPIKEK 52

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDC-NRTVKFSDLLSVTR 134
                 V   V D +E F   V     +S  A    E   P      R +    L+    
Sbjct: 53  ALKCGAVESLVVDAKEEF---VKEYAFASIKANALYENRYPLSTALARPLITKLLVEAAE 109

Query: 135 QLGADVLATG 144
           + GAD +A G
Sbjct: 110 KYGADAVAHG 119


>gi|170747043|ref|YP_001753303.1| argininosuccinate synthase [Methylobacterium radiotolerans JCM
           2831]
 gi|170653565|gb|ACB22620.1| Argininosuccinate synthase [Methylobacterium radiotolerans JCM
           2831]
          Length = 412

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  ARR 
Sbjct: 10  KKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELEPARRK 56

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
            + + +     Y+ D  E F    + P   +       Y  G +    +   + +     
Sbjct: 57  AELLGIKPENIYIEDLREEFVRDYVFPMFRANAVYEGVYLLGTSIARPLIAKKQI----- 111

Query: 130 LSVTRQLGADVLATG 144
             +  ++GAD +  G
Sbjct: 112 -EIAEKVGADAVCHG 125


>gi|284164675|ref|YP_003402954.1| exsB protein [Haloterrigena turkmenica DSM 5511]
 gi|284014330|gb|ADB60281.1| exsB protein [Haloterrigena turkmenica DSM 5511]
          Length = 243

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 7  TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
          T  N+   D      R V+ +SGG+DS+  A   +  GY++  +              G 
Sbjct: 2  TDANTATDDDESTKKRAVILLSGGMDSATAAYEARDRGYELYALH----------TSYGQ 51

Query: 67 CCAGQDVYDARRVCDTIN 84
              +++  ARR+ D ++
Sbjct: 52 RTEDRELECARRLADELD 69


>gi|260429185|ref|ZP_05783162.1| argininosuccinate synthase [Citreicella sp. SE45]
 gi|260419808|gb|EEX13061.1| argininosuccinate synthase [Citreicella sp. SE45]
          Length = 406

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 45/206 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             + + V   Y+ D  E F    + P   +                   + L      LG
Sbjct: 51  KAEMLGVSKVYIEDLREEFVRDFVFPMFRA-------------------NALYEGLYLLG 91

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFP--L 192
              +A     +  + +        +         DQ  F    +A   +    +  P  L
Sbjct: 92  -TSIARPLISKRLVEIAAAEGADAVAHGATGKGNDQVRFELAAYALNPEI--KVIAPWRL 148

Query: 193 GDMKKESVR--DLAREMGLDIADKSD 216
            D+     R  + A +  + +A    
Sbjct: 149 WDLT-SRTRLLEFAEQNQIPVAKDKR 173


>gi|253583212|ref|ZP_04860410.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium varium ATCC 27725]
 gi|251833784|gb|EES62347.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium varium ATCC 27725]
          Length = 273

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DS++VA L  +  G + V+G+ +                + + V  A  V
Sbjct: 30  KVVLGLSGGIDSALVAFLAAKAFGPENVLGIMM-----------PYKTSSKESVEHAELV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +     +         I P   +Y   E  +  +     +         R+  + 
Sbjct: 79  IKALGIRSKKIE---------ITPMVEAYFNLEQDMDSLRKGNKM--------ARERMS- 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +   H  + R  V     +  IM              ++T          P+GD+ K  
Sbjct: 121 -ILFDHSAKERALVLGTSNKTEIML------------GYSTQFGDSASAVNPIGDLYKTH 167

Query: 200 VRDLAREMGLD--IADKSDSQDI 220
           V +L+R MG+   + +K  S D+
Sbjct: 168 VWNLSRHMGVPRELVEKKPSADL 190


>gi|162448041|ref|YP_001621173.1| thiamine biosynthesis protein ThiI [Acholeplasma laidlawii PG-8A]
 gi|189030612|sp|A9NHG7|THII_ACHLI RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|161986148|gb|ABX81797.1| thiamine biosynthesis ATP pyrophosphatase [Acholeplasma laidlawii
           PG-8A]
          Length = 412

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 18/92 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ + G DV                       + V     +   +
Sbjct: 179 LVMLSGGIDSPVAAHLMMKQGIDV----------ELFHFESTPLTPLESVQKVIEIAKKL 228

Query: 84  -------NVSHYVFDYEERFRNAVIVPFASSY 108
                   +  ++  + +    A++   A  Y
Sbjct: 229 AYYTPYNKIKLHLVPFTKIH-EAILSYVADPY 259


>gi|20090325|ref|NP_616400.1| thiazole biosynthesis protein [Methanosarcina acetivorans C2A]
 gi|19915327|gb|AAM04880.1| thiazole biosynthesis protein [Methanosarcina acetivorans C2A]
          Length = 438

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCC-AGQDVYDARRVC 80
           VV MSGG+DS V A L+ + G  +  V      Y    A +R   C    Q      +  
Sbjct: 232 VVLMSGGLDSPVAAWLMMKRGVMITPVYCNNSPYAEDAARERAFDCIRQLQTWAPGHQFA 291

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T  + H   +            F  +     T   C+ C R + + +   V +++GA  
Sbjct: 292 -TYEIPH-GPNLRA---------FIGTCDRKNT---CLLCKRMM-YREAYEVMKKVGASG 336

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           + TG  +                         Q+         QL    + PL    K  
Sbjct: 337 IITGSSLGQVAS--------------------QTAANMHAEIYQLAIPIYHPLIAFDKSE 376

Query: 200 VRDLAREMG 208
           + D+AR +G
Sbjct: 377 IVDIARRIG 385


>gi|22001999|sp|Q8TQS4|THII_METAC RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
          Length = 412

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 39/189 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCC-AGQDVYDARRVC 80
           VV MSGG+DS V A L+ + G  +  V      Y    A +R   C    Q      +  
Sbjct: 206 VVLMSGGLDSPVAAWLMMKRGVMITPVYCNNSPYAEDAARERAFDCIRQLQTWAPGHQFA 265

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T  + H   +            F  +     T   C+ C R + + +   V +++GA  
Sbjct: 266 -TYEIPH-GPNLRA---------FIGTCDRKNT---CLLCKRMM-YREAYEVMKKVGASG 310

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           + TG  +                         Q+         QL    + PL    K  
Sbjct: 311 IITGSSLGQVAS--------------------QTAANMHAEIYQLAIPIYHPLIAFDKSE 350

Query: 200 VRDLAREMG 208
           + D+AR +G
Sbjct: 351 IVDIARRIG 359


>gi|146295177|ref|YP_001178948.1| PP-loop domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408753|gb|ABP65757.1| PP-loop domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 303

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +++  +SGG DS +    +L ++GY+V+ + +      + S R              
Sbjct: 46  KKDKILAVISGGKDS-MALWDVLVKEGYNVVAMYI-NLGIGEYSNRSQKV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTRQ 135
                 N+   V D ++ F           Y   +T    PC  C   +K      V   
Sbjct: 96  SFASKNNLPLIVKDIKKEFG-------LDIYKLSKTLKRSPCSICGS-IKRYLFNKVAYD 147

Query: 136 LGADVLATGHYI 147
            G   +ATGH +
Sbjct: 148 GGFSAVATGHNL 159


>gi|322382666|ref|ZP_08056530.1| GMP synthase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153364|gb|EFX45787.1| GMP synthase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 512

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 34/202 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           D+ +   D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +      
Sbjct: 210 DIREQVGDRKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFIDHGLLRKDEAEGVME 265

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSD 128
             V          ++     D  +RF            A  E P     +  N  + +  
Sbjct: 266 TFVG-------KFDMKVIKIDARDRF--------LGKLAGVEDPEQKRKIIGNEFI-YVF 309

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                     D LA G      +  G D  +     +           +    +    +L
Sbjct: 310 EEESAHIGEFDFLAQGTLYTDIVESGTDTAQT---IKSHHN-------VGGLPEGMRFEL 359

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E GL 
Sbjct: 360 IEPLKALFKDEVRKVGEECGLP 381


>gi|317013776|gb|ADU81212.1| NAD synthetase [Helicobacter pylori Gambia94/24]
          Length = 260

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 44/217 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV  +SGG+DS+VV  L ++       V      +  A     S    +   DA  +C
Sbjct: 26  KKVVYGLSGGLDSAVVGVLCQK-------VF---KENAHALLMPSSVSMPESKTDALDLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +T ++ +  +       + +        +       C      ++ + L   + +     
Sbjct: 76  ETFSIPYTEYSIAP--YDKIFGSHFKDASLTRKGNFC----ARLRMAFLYDYSLK----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                     L VG   K  R++              + T    L     P+G++ K  V
Sbjct: 125 -------SDSLVVGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTEV 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
            +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 165 YELACHLNIPKKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|312136377|ref|YP_004003714.1| thiamine biosynthesis/tRNA modification protein thii
           [Methanothermus fervidus DSM 2088]
 gi|311224096|gb|ADP76952.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanothermus fervidus DSM 2088]
          Length = 373

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 44/207 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+  +SGG+DS V   L+ + G  V  +    ++ R  +          ++   +++
Sbjct: 174 QGKVIGLLSGGIDSPVALYLMMKRGCSVTALH---FDIRPFT-------IDGNIKKVKKI 223

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--G 137
            + +                       SY++GE     +     +K+ D+L   +++   
Sbjct: 224 SEVL----------------------ESYSSGE-FELLI-----LKYGDVLKKIKKIAGK 255

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE--RDQSYFLFATTQQQLC-DLRFPLGD 194
           +  +   H +          K    +     L     Q+     TT   +   +  PL  
Sbjct: 256 STCIVCRHLMYKIAEKIAKKKNAHAIVDGSSLGQVASQTLPNILTTHYGIEIPILSPLIG 315

Query: 195 MKKESVRDLAREMGLDIADKSDSQDIC 221
           M K  +R +A ++G       +S DIC
Sbjct: 316 MDKTEIRKIAEKIG-TYEISCESPDIC 341


>gi|293571076|ref|ZP_06682117.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
 gi|291608859|gb|EFF38140.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
          Length = 484

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 43/207 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K+ R++ A+SGGVDS V+  LL +     G+  +GV    +  R+ S  + +        
Sbjct: 32  KESRILAAVSGGVDSMVLLHLLLQAQRQIGFS-LGVVHINHQLREESAEEAAYL------ 84

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R  C+  N+  YV  +E+  + A+           ET        R  ++     V  
Sbjct: 85  --RSYCEKKNLPLYVSVWEDPAKTAI-----------ETAA------RNFRYQAFTRVME 125

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFP 191
           +   D L T H+       GDD     +M     +   Q        + Q      L  P
Sbjct: 126 EEQYDTLMTAHH-------GDDQIETVLMK---IIRGGQLSTFSGIKEVQPFATGRLVRP 175

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQ 218
           L    KE +   A E  L   +   +Q
Sbjct: 176 LLSFSKEELYAYAAESQLVYFEDQTNQ 202


>gi|257899971|ref|ZP_05679624.1| PP-loop family protein [Enterococcus faecium Com15]
 gi|257837883|gb|EEV62957.1| PP-loop family protein [Enterococcus faecium Com15]
          Length = 481

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 43/207 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K+ R++ A+SGGVDS V+  LL +     G+  +GV    +  R+ S  + +        
Sbjct: 29  KESRILAAVSGGVDSMVLLHLLLQAQRQIGFS-LGVVHINHQLREESAEEAAYL------ 81

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R  C+  N+  YV  +E+  + A+           ET        R  ++     V  
Sbjct: 82  --RSYCEKKNLPLYVSVWEDPAKTAI-----------ETAA------RNFRYQAFTRVME 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFP 191
           +   D L T H+       GDD     +M     +   Q        + Q      L  P
Sbjct: 123 EEQYDTLMTAHH-------GDDQIETVLMK---IIRGGQLSTFSGIKEVQPFATGRLVRP 172

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQ 218
           L    KE +   A E  L   +   +Q
Sbjct: 173 LLSFSKEELYAYAAESQLVYFEDQTNQ 199


>gi|119490521|ref|ZP_01622963.1| NAD(+) synthetase [Lyngbya sp. PCC 8106]
 gi|119453849|gb|EAW35005.1| NAD(+) synthetase [Lyngbya sp. PCC 8106]
          Length = 569

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DSS+VAA+     G + V+GV +                +   V DA  + 
Sbjct: 312 VVLGLSGGIDSSLVAAIAAEAVGKENVLGVLM-----------PSPYSSEHSVTDAVELA 360

Query: 81  DTINVSHYVFDYEERFR--NAVIVPFASSYAAG 111
           + + ++       E  +  + V+ P  +    G
Sbjct: 361 ENLGINTKTLAIAEAMKAFDQVLEPVFAGTEFG 393


>gi|83746168|ref|ZP_00943222.1| Queuosine biosynthesis protein QueC [Ralstonia solanacearum
          UW551]
 gi|207744073|ref|YP_002260465.1| hypothetical protein RSIPO_02259 [Ralstonia solanacearum IPO1609]
 gi|83727134|gb|EAP74258.1| Queuosine biosynthesis protein QueC [Ralstonia solanacearum
          UW551]
 gi|206595477|emb|CAQ62404.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 224

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+    G++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANTQGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|325282941|ref|YP_004255482.1| GMP synthase (glutamine-hydrolyzing) [Deinococcus proteolyticus
           MRP]
 gi|324314750|gb|ADY25865.1| GMP synthase (glutamine-hydrolyzing) [Deinococcus proteolyticus
           MRP]
          Length = 514

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 34/196 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            + RV++ +SGGVDSS +A LL R  G  +  V                    + V  A 
Sbjct: 218 SEGRVLLGISGGVDSSTLALLLSRAVGDRLTAVF--------VDHGLLRLNEREQVETAL 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R      V+    D  E F +                +   +  R +   + + V  +  
Sbjct: 270 RGA---GVNVVTVDAREEFMHH------------LDGVSDPEQKRKIIGREFIRVFDRET 314

Query: 138 ADVLATGHYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                     +  LY   +   G       +           +    +     L  P   
Sbjct: 315 EKYGPFEFLAQGTLYPDVIESAGGEGAANIKSHHN-------VGGLPEDLAFKLVEPFRT 367

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++A+ +GL 
Sbjct: 368 LFKDEVREIAKLLGLP 383


>gi|254463393|ref|ZP_05076809.1| argininosuccinate synthase [Rhodobacterales bacterium HTCC2083]
 gi|206679982|gb|EDZ44469.1| argininosuccinate synthase [Rhodobacteraceae bacterium HTCC2083]
          Length = 406

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLETEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + + V   Y+ D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAELMGVKDIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LI 104

Query: 131 SVTRQLGADVLATG 144
            +  ++GAD +A G
Sbjct: 105 EIAEEVGADAIAHG 118


>gi|134046845|ref|YP_001098330.1| ExsB family protein [Methanococcus maripaludis C5]
 gi|132664470|gb|ABO36116.1| ExsB family protein [Methanococcus maripaludis C5]
          Length = 261

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++N K  + VVA SGGVDS   A+++            +++     + R       +   
Sbjct: 58  NQNLKKEKAVVAFSGGVDS--TASIIAGK---------KIFEICAVTVRSKYIMDAKTEQ 106

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +   +   +NVSH   D      +++     S  Y       PC  C+ TV+ +++L+  
Sbjct: 107 NVSELARLLNVSHEFIDVN---LDSIFEDTKSGKYH------PCGRCHSTVE-AEILNYA 156

Query: 134 RQLGADVLATGHYIRSRLYV---GDDGKRRRIMCRPMDLERDQS 174
            + G   +  G  +          D G  R  +   + + +D+S
Sbjct: 157 EKNGIKYIIYGDMLSIGHLSVKKVDKGIIRLNILSVLSMAKDES 200


>gi|78777268|ref|YP_393583.1| ExsB [Sulfurimonas denitrificans DSM 1251]
 gi|110816276|sp|Q30RN3|QUEC_SULDN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|78497808|gb|ABB44348.1| ExsB [Sulfurimonas denitrificans DSM 1251]
          Length = 224

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          N K+ + +  MSGG+DS++ A ++K  GY+++ +    Y  R  +K              
Sbjct: 2  NLKNKKAICIMSGGMDSTLGAYMVKEMGYEIVALHF-NYAQRTEAKELFC---------F 51

Query: 77 RRVCDTINVSH-YVFDY 92
          +++C+ +NVS+ YV D 
Sbjct: 52 KKICEALNVSNSYVLDL 68


>gi|312793831|ref|YP_004026754.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180971|gb|ADQ41141.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 268

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 46/239 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LLK   +DV+G                     ++  DA ++   
Sbjct: 24  VLVAFSGGVDST---FLLKVS-FDVLG------EKAIGVFSSSVLSPQREKEDAAKLAKD 73

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I     V +  + F N     F          L C  C       DL+   + L  ++  
Sbjct: 74  IGARLIVIE-RDVFSN---EDFMK-----NDRLRCYYCK-----KDLIKRLKVLKEEL-- 117

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                   L    +G     +       +       A  ++ +    F  G + KE +R 
Sbjct: 118 -------NLNEIVEGSNIDDLQDFRPGRK-------ALEEEGIKSPLFEAG-LTKEEIRY 162

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNG--QILGRHNG 258
           L++E GL    K  +   C V +  Y D +       I    D +   G  Q+  RH+G
Sbjct: 163 LSKEFGLSTYQKPSA--ACLVTRIPYGDEITLEKLQMIEKAEDFLVQKGFSQVRVRHHG 219


>gi|297530834|ref|YP_003672109.1| exsB protein [Geobacillus sp. C56-T3]
 gi|297254086|gb|ADI27532.1| exsB protein [Geobacillus sp. C56-T3]
          Length = 223

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 71/197 (36%), Gaps = 26/197 (13%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  ++  VVV  SGG DS+      K+   +V  VT   ++  +  +R+        +  
Sbjct: 2   KMNEEKAVVV-FSGGQDSTTCLFWAKKQFGEVEAVT---FDYGQRHRRE--------IDV 49

Query: 76  ARRVCDTINVSHYVFDYEERFR---NAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLS 131
           A+ + D + V H V D     +   NA+     +     GE P   VD    +  S    
Sbjct: 50  AQAIADELGVRHTVLDLSLLGQLAPNALTRRDIAIEQKEGELPTTFVDGRNLLFLSFAAV 109

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q GA  + TG           D       CR + ++        A   + +     P
Sbjct: 110 FAKQRGARHIVTG-------VCETDFSGYPD-CRDVFIKSLNVTLNLAMDYEFVIHT--P 159

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K     LA E+G
Sbjct: 160 LMWLTKAETWKLADELG 176


>gi|182412511|ref|YP_001817577.1| argininosuccinate synthase [Opitutus terrae PB90-1]
 gi|177839725|gb|ACB73977.1| Argininosuccinate synthase [Opitutus terrae PB90-1]
          Length = 408

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+A SGG+D+SV+   L+   YD   VT    +  +  + KG          AR+  
Sbjct: 1   MKIVLAYSGGLDTSVIVKWLRET-YDAEIVTFA-ADIGQEEELKGLPQK------ARKTG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +    HY  D  E F    I P   + A  E          R +     + + ++  AD
Sbjct: 53  AS---KHYTLDLVEEFARDFIYPMIRANAIYEGQYYLGTSIARPLIAKAQVEIAKREKAD 109

Query: 140 VLATG 144
            +A G
Sbjct: 110 TVAHG 114


>gi|328552283|gb|AEB22775.1| GMP synthase [Bacillus amyloliquefaciens TA208]
          Length = 513

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 65/200 (32%), Gaps = 44/200 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSVVA L+ +  G  +  +            RKG          A  
Sbjct: 218 DKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIF-----VDHGLLRKGE---------AEG 263

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPL--PCVDCNRTVKFSDLLS 131
           V  T         + E F   VI       F +       P     +  N  +       
Sbjct: 264 VMKT---------FSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYV--FDD 312

Query: 132 VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +L G D L  G        + + G       +           +    +    +L  
Sbjct: 313 EAVKLKGIDYLVQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+G+ 
Sbjct: 363 PLNTLFKDEVRALGTELGIP 382


>gi|315053253|ref|XP_003176000.1| GMP synthase [Arthroderma gypseum CBS 118893]
 gi|311337846|gb|EFQ97048.1| GMP synthase [Arthroderma gypseum CBS 118893]
          Length = 541

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 54/208 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVI---GVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+K   G   + V+   GV ++L  +    +             
Sbjct: 237 VIGAVSGGVDSTVAAKLMKEAIGDRFHAVLVDNGV-MRLNEAEIVRET------------ 283

Query: 76  ARRVCDTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNR 122
              +   + ++  V D  E+F      VI P          F   +   +T    V+ + 
Sbjct: 284 ---LTKNLGINLTVIDASEKFLGRLKGVIDPEQKRKIIGNTFIEIFQ--DTAKTIVEQSA 338

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             K  D +    Q           I S  + G     +                      
Sbjct: 339 GYKEGDKIEWLLQ----GTLYPDVIESISFKGPSATIKTHHNVG-----------GLLKG 383

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
             L  L  PL ++ K+ VR L   +G+ 
Sbjct: 384 MHL-KLIEPLRELFKDEVRSLGTNLGIP 410


>gi|260222085|emb|CBA31300.1| hypothetical protein Csp_F36830 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 647

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG+DSS V A  +    D     +Q Y+      +        D+  ARRV   + V 
Sbjct: 264 LSGGLDSSAVVAFAREQNPD-----IQCYSIDVQGAQDEG--FADDLPYARRVAQHLGVP 316

Query: 87  HYVF 90
            +V 
Sbjct: 317 LHVV 320


>gi|312130969|ref|YP_003998309.1| argininosuccinate synthase [Leadbetterella byssophila DSM 17132]
 gi|311907515|gb|ADQ17956.1| Argininosuccinate synthase [Leadbetterella byssophila DSM 17132]
          Length = 400

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S     LK   G +V  V   L ++   +  +        V D  + 
Sbjct: 2   KKVVLAFSGGLDTSFCVKYLKDDKGMEVHSV---LVDTGGFTDEE--------VADIEKK 50

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--DLLSVTRQL 136
              + V  HY     +++    I              P       + F    +    + +
Sbjct: 51  AYDLGVKTHYTARVADKYYKDCIRFLIFGNVLKNNTYPLSVSAERI-FQAVAVAEYAKSI 109

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 110 GATAIAHG 117


>gi|88604245|ref|YP_504423.1| hypothetical protein Mhun_3017 [Methanospirillum hungatei JF-1]
 gi|88189707|gb|ABD42704.1| PP-loop [Methanospirillum hungatei JF-1]
          Length = 197

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR  V  SGG DSS+ A LL              +   + +    S     ++   R+  
Sbjct: 1   MRAAVLFSGGKDSSLAAILLS------------TWYEVELNTYLFS--QDTNIDAVRKAA 46

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASS 107
            ++   H++  + E     ++      
Sbjct: 47  GSLGFPHHIRQFREELLGEMVDLIIRE 73


>gi|72162988|ref|YP_290645.1| GMP synthase [Thermobifida fusca YX]
 gi|91206835|sp|Q47LQ0|GUAA_THEFY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71916720|gb|AAZ56622.1| GMP synthase (glutamine-hydrolyzing) [Thermobifida fusca YX]
          Length = 528

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 27/195 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   V
Sbjct: 224 KRAICGLSGGVDSAVAAALVQRAIGDRLTCVF-----VDHGLLRQGEAEQVE--KD--FV 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             T   S  V D +ERF  A          AG T     +  R +   + + V  Q   +
Sbjct: 275 AAT-GASLKVVDAQERFLTA---------LAGVT---DPETKRKIIGREFIRVFEQAARE 321

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMC-RPMDLERDQSYFLFATT--QQQLCDLRF-PLGDM 195
           ++A        +     G     +                        L      PL ++
Sbjct: 322 IVAEAGEGDEAVEFLVQGTLYPDVVESGGGNGTANIKSHHNVGGLPDDLQFTLVEPLREL 381

Query: 196 KKESVRDLAREMGLD 210
            K+ VR +  E+GL 
Sbjct: 382 FKDEVRRVGEELGLP 396


>gi|117928464|ref|YP_873015.1| argininosuccinate synthase [Acidothermus cellulolyticus 11B]
 gi|166219941|sp|A0LUB9|ASSY_ACIC1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|117648927|gb|ABK53029.1| argininosuccinate synthase [Acidothermus cellulolyticus 11B]
          Length = 401

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 61/202 (30%), Gaps = 40/202 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +    G +VI V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVCIGWITEQTGAEVIAV-------------AVDVGQGEDMEVIRKRA 50

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D    F     VP   + A      P +   +R +    L++   +  A
Sbjct: 51  LACGAVEAEVIDARAEFAADYCVPALRANALYMGRYPLISALSRPLIDKHLVAAAHRHKA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--M 195
             +A G                           DQ  F            +  P+ D  M
Sbjct: 111 TAVAHG---------------------STGKGNDQVRFEVGIGSLDPELRILAPVRDSGM 149

Query: 196 KKESVRDLAREMGLDIADKSDS 217
            ++     A   GL I     S
Sbjct: 150 TRDRAIAFAEAKGLPIEVTKKS 171


>gi|294495633|ref|YP_003542126.1| argininosuccinate synthase [Methanohalophilus mahii DSM 5219]
 gi|292666632|gb|ADE36481.1| argininosuccinate synthase [Methanohalophilus mahii DSM 5219]
          Length = 394

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V+A SGG+D+S+   LLK   YD              +         +DV +A +  
Sbjct: 3   KKAVLAYSGGLDTSICVPLLKEK-YDC---------DEVITVAVDVGQPREDVEEATKKA 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             I+  H+  D  E F    I P   +    E  +      R +    ++ +  + GA +
Sbjct: 53  QDISDLHFTLDVREEFVKDYIFPLIKANGDYEGYVMGTSIARPLIAKKVVEIAEKEGASM 112

Query: 141 LATG 144
           LA G
Sbjct: 113 LAHG 116


>gi|167464930|ref|ZP_02330019.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 494

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 34/202 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAG 70
           D+ +   D +V+ A+SGGVDSSVVA L+ +     IG  +T    +     K +      
Sbjct: 192 DIREQVGDRKVLCALSGGVDSSVVAVLIHKA----IGDQLTCMFIDHGLLRKDEAEGVME 247

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSD 128
             V          ++     D  +RF            A  E P     +  N  + +  
Sbjct: 248 TFVG-------KFDMKVIKIDARDRF--------LGKLAGVEDPEQKRKIIGNEFI-YVF 291

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                     D LA G      +  G D  +     +           +    +    +L
Sbjct: 292 EEESAHIGEFDFLAQGTLYTDIVESGTDTAQT---IKSHHN-------VGGLPEGMRFEL 341

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E GL 
Sbjct: 342 IEPLKALFKDEVRKVGEECGLP 363


>gi|262306017|gb|ACY45601.1| gln amidotransferase [Semibalanus balanoides]
          Length = 197

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 25/110 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +      VI V +     RK    +               
Sbjct: 45  KVLLLVSGGVDSTVCAALLHKALSQDQVIAVHIDNGFMRKHESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              I +   V +    F              G T +P    N  ++   L
Sbjct: 95  -RKIGLKLRVINARHNF------------LNGSTTVPETGANGVLRKRAL 131


>gi|206890038|ref|YP_002248890.1| argininosuccinate synthase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741976|gb|ACI21033.1| argininosuccinate synthase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 395

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 38/138 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++++A SGG+D+SV    LK   G DVI                  C       + + +
Sbjct: 1   MKIILAYSGGLDTSVAIKWLKEKYGADVIAF----------------CADIGQEENFQEI 44

Query: 80  CDTINVS-----HYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKF 126
            +   +       Y+ D +E F    + P   + A  ET          P +   +    
Sbjct: 45  AEKA-IKTGASNVYIEDLKEEFIRNFVFPMLRANAVYETGYLMGTSIARPLIAKTQ---- 99

Query: 127 SDLLSVTRQLGADVLATG 144
              + +  +  A+ +A G
Sbjct: 100 ---IDIAIKEKAEAVAHG 114


>gi|88608428|ref|YP_506753.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neorickettsia sennetsu str. Miyayama]
 gi|88600597|gb|ABD46065.1| GMP synthase [Neorickettsia sennetsu str. Miyayama]
          Length = 519

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 37/191 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDS+V A  +    G  +  +                     +  + +    
Sbjct: 219 VLAAVSGGVDSTVAAKFMHGAIGERLHCIF-----------VDTGLLRKNEANEVKESFS 267

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           ++ +   +    +RF      V  P       GET                     ++ G
Sbjct: 268 SLGIPLKIVFAADRFFKKLAGVADPEQKRRIVGETF-----------IQVFEEEALKIQG 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + L  G        V + G       +           +    ++    L  P   + K
Sbjct: 317 VEFLLQG---TLYPDVIESGGGGSHTIKSHHN-------VGGLPKKMGLKLLEPFRLLFK 366

Query: 198 ESVRDLAREMG 208
           + VR + R++G
Sbjct: 367 DEVRAIGRQLG 377


>gi|332179219|gb|AEE14908.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfobium narugense
           DSM 14796]
          Length = 515

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D + + A+SGGVDSS  A L+ +     IG      ++              +  D +R+
Sbjct: 217 DQKAICALSGGVDSSAAAVLVHKA----IG------DNLTCFYVDTGLMRKNENRDIKRI 266

Query: 80  CD---TINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            D    +NV     D  ERF      V  P       GE                     
Sbjct: 267 FDEEFHLNVKF--IDARERFLSKLEGVSDPERKRKIIGEEF-----------IRTFEDAI 313

Query: 134 RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + LG  D L  G      +        + +  +           +    +     L  P 
Sbjct: 314 KGLGDFDWLVQGTLYPDVIESAVSVGGKAVRIKSHHN-------VAGLPEDMKFKLLEPF 366

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR+LA E+GL 
Sbjct: 367 RNLFKDEVRNLALELGLP 384


>gi|320586022|gb|EFW98701.1| gmp synthase [Grosmannia clavigera kw1407]
          Length = 1139

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 27/196 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC-D 81
           V+ A+SGGVDS+VVA L+K      IG      +   A           +  D ++   +
Sbjct: 237 VIGAVSGGVDSTVVARLMKEA----IG------DRFHAVLVDNGVMRLNECADVKKALQE 286

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG 137
            + ++  + D    F      V  P       G T    +     ++             
Sbjct: 287 HLGINLTIIDGGALFLGRLKGVTEPETKRKIIGGTF-IDLFEEEAIRIEKAAENTANAGK 345

Query: 138 ADVLATGHY---IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            +    G     +   L +  +   +          R           Q L  L  PL +
Sbjct: 346 VEFFVQGTLYPDVIESLSLNTNNTVKTHHNVGGLPAR-------MMNGQGL-KLIEPLRE 397

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR   R++G+ 
Sbjct: 398 LFKDEVRAFGRKLGIP 413


>gi|310800805|gb|EFQ35698.1| GMP synthase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 573

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 57/196 (29%), Gaps = 30/196 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG             R   C   ++          
Sbjct: 249 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAILVDNGVMRLNECEQVKETLQ-----KH 299

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TR 134
           + ++  V D  E F      V  P       G T    +     ++              
Sbjct: 300 LGINLTVVDGAELFLGRLKGVTEPEKKRKIIGGTF-IDLFEKEALRIEKEAENTPNAGAV 358

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +           I S  + G     +                +          L  PL +
Sbjct: 359 EWFLQGTLYPDVIESLSFKGPSATIKTHHN------------VGGLPDTLKLKLIEPLRE 406

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR   RE+G+ 
Sbjct: 407 LFKDEVRSFGRELGIH 422


>gi|296876515|ref|ZP_06900566.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432508|gb|EFH18304.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus parasanguinis
           ATCC 15912]
          Length = 521

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 208 TMDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF--------V 259

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                       V D   +     ++    D  +RF + +                 V  
Sbjct: 260 DHGLLRKDEADQVMD--MLGGKFGLNIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYV 317

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 318 -----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 360

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 PEDMQFELIEPLNTLYKDEVRALGTELGMP 390


>gi|313126312|ref|YP_004036582.1| thiamine biosynthesis ATP pyrophosphatase [Halogeometricum
           borinquense DSM 11551]
 gi|312292677|gb|ADQ67137.1| thiamine biosynthesis ATP pyrophosphatase [Halogeometricum
           borinquense DSM 11551]
          Length = 387

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 40/193 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV V +SGG+DS V A  L R G   I V + L     A  R  +    + +  AR  
Sbjct: 178 QGRVAVLVSGGIDSPVAAWRLMRRGCIPIPVYVDLGEYGGADHRARAFEVIRTLA-ARAP 236

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +     V D  +     V+    +  +        +   R        +V R+ GA 
Sbjct: 237 GEDL--RPRVVDGSD-----VVDRLIAEVSETR-----MLSLRRAMLVMAEAVARRDGAH 284

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG----DM 195
            +ATG  +  +                      Q+    A T +       P+       
Sbjct: 285 SVATGEALGQKSS--------------------QTGANLAVTDEA---ATMPIHRPLLTT 321

Query: 196 KKESVRDLAREMG 208
            K  +   AR +G
Sbjct: 322 DKSDIVAEARRIG 334


>gi|206900215|ref|YP_002251379.1| Veg136 protein [Dictyoglomus thermophilum H-6-12]
 gi|206739318|gb|ACI18376.1| Veg136 protein [Dictyoglomus thermophilum H-6-12]
          Length = 318

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 22/178 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +++VA+SGG DS +    +L   GY+  G+ + L  S  + K K           A+
Sbjct: 46  KTDKILVAVSGGKDS-LALWDILNSLGYNSDGLYIDLGISEYSEKSK---------EVAQ 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  ++ N+  +V   ++ +            A      PC  C   +K   +    ++L 
Sbjct: 96  KFAESRNLKLHVVSIKDIYGVG-----IKEIAHKNRKPPCSTCG-VIKRYIMNLTAKELQ 149

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             V+ATGH +     +        I+   +D  + QS  LF   +        PL  +
Sbjct: 150 YKVIATGHNLDDESAIL----LGNILHWQIDYLKAQSPILFE-DEAGFARKVKPLYRI 202


>gi|307150328|ref|YP_003885712.1| argininosuccinate synthase [Cyanothece sp. PCC 7822]
 gi|306980556|gb|ADN12437.1| argininosuccinate synthase [Cyanothece sp. PCC 7822]
          Length = 400

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGGVD+SV    L+K  G  +VI +                   G ++   ++ 
Sbjct: 6   KVVLAYSGGVDTSVCIPYLIKEWGVQEVIAL-------------AADLGQGDELGPIQQK 52

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                 V   V D +E F          + A  E   P      R +    L+    + G
Sbjct: 53  ALKCGAVESLVADAKEEFAKEYAFAAIKANALYENRYPLSTALARPLIAKLLVEAAEKYG 112

Query: 138 ADVLATGHYIRSRLYVGDD 156
           AD +A G   +    V  D
Sbjct: 113 ADAVAHGCTAKGNDQVRFD 131


>gi|269929160|ref|YP_003321481.1| argininosuccinate synthase [Sphaerobacter thermophilus DSM 20745]
 gi|269788517|gb|ACZ40659.1| argininosuccinate synthase [Sphaerobacter thermophilus DSM 20745]
          Length = 409

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 28/137 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            P+  +VV+A SGG+D+SV+ A +K   G +VI  T    +  +    +G         +
Sbjct: 3   TPEVNKVVLAYSGGLDTSVILAWIKEHYGCEVIAFT---ADVGQGDSFEG--------LE 51

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFS 127
           A+ +    +   YV D +E F      P           Y  G +   P +  ++     
Sbjct: 52  AKALASGAS-KLYVRDLKEEFLTKYAFPTLRAGAVYERKYLLGTSFARPLIASHQ----- 105

Query: 128 DLLSVTRQLGADVLATG 144
             + + R  GAD +A G
Sbjct: 106 --VEIARLEGADAVAHG 120


>gi|16330978|ref|NP_441706.1| NAD synthetase [Synechocystis sp. PCC 6803]
 gi|8928223|sp|P74292|NADE_SYNY3 RecName: Full=Probable glutamine-dependent NAD(+) synthetase;
           AltName: Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|1653472|dbj|BAA18386.1| NH(3)-dependent NAD(+) synthetase [Synechocystis sp. PCC 6803]
          Length = 558

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 35/189 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++ +SGG+DSS+VAA+     G + V+G+ +                +   + DA  +
Sbjct: 300 KAILGLSGGIDSSLVAAIAVEALGKENVLGILM-----------PSPYSSDHSIQDALAL 348

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP----LPCVDCNR----TVKFSDLLS 131
              + ++              I P  ++Y     P     P           ++ + L++
Sbjct: 349 AKNLGMNTQTIP---------IGPIMATYDQALVPLFQDAPFGLAEENLQSRIRGNLLMA 399

Query: 132 VTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLF-ATTQQQLCDLR 189
           +  + G  +L+TG+     + Y    G     +    D+ + Q + L     ++Q     
Sbjct: 400 IANKFGHLLLSTGNKSELAVGYCTLYGDMNGGLAAIADVPKTQVFELCRWLNREQ---TI 456

Query: 190 FPLGDMKKE 198
            P   + K 
Sbjct: 457 IPPSVLTKP 465


>gi|331214035|ref|XP_003319699.1| argininosuccinate synthase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309298689|gb|EFP75280.1| argininosuccinate synthase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 432

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV++A SGG+D+S + A L   GY+V+   +                  +D   A  
Sbjct: 4   SQGRVLLAYSGGLDTSCILAWLIEQGYEVVA-FMA------------DVGQEEDFKAAEA 50

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFAS 106
               +    +V  D +  F   +I P   
Sbjct: 51  KALKVGAKKFVLKDLKREFVTELITPAVQ 79


>gi|222099059|ref|YP_002533627.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359]
 gi|221571449|gb|ACM22261.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359]
          Length = 419

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 27/129 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKR----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V+VA+SGG+DS  +  +LK+       +V+G  L           +    + +D      
Sbjct: 13  VLVAVSGGIDSMTLLYILKKLSPLLKIEVLGAHL---------DHRIRESSERDRKFVED 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +C   NV             AV+  P      +G+T        R V++S L  V ++LG
Sbjct: 64  ICRQWNVPVET---------AVVDVPALWK-GSGKTLEEVA---REVRYSFLEKVAKKLG 110

Query: 138 ADVLATGHY 146
           A  +A  H+
Sbjct: 111 ATKIALAHH 119


>gi|126738485|ref|ZP_01754190.1| argininosuccinate synthase [Roseobacter sp. SK209-2-6]
 gi|126720284|gb|EBA16990.1| argininosuccinate synthase [Roseobacter sp. SK209-2-6]
          Length = 408

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARQ 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAEMLGIKPENIFIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD +A G
Sbjct: 105 LVEIAEATGADAVAHG 120


>gi|29830022|ref|NP_824656.1| GMP synthase [Streptomyces avermitilis MA-4680]
 gi|44887993|sp|Q82HM9|GUAA_STRAW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29607132|dbj|BAC71191.1| putative GMP synthase [Streptomyces avermitilis MA-4680]
          Length = 525

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 34/196 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYD 75
           R +  +SGGVDS+V AAL+++  G  +  V      ++   + +  K             
Sbjct: 225 RAICGLSGGVDSAVAAALVQKAIGSQLTCVYVDHGLMRQGETEQVEKDF----------- 273

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V  T  V   V D EERF  A+              +   +  R +   + + V  Q
Sbjct: 274 ---VAAT-GVQLKVVDAEERFLTALKG------------VSDPEEKRKIIGREFIRVFEQ 317

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGD 194
             A+++A      + L  G                  +S + +    +    +L  PL  
Sbjct: 318 AQAEIIADEGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFELIEPLRK 377

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + +E+GL 
Sbjct: 378 LFKDEVRMVGQELGLP 393


>gi|298206790|ref|YP_003714969.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Croceibacter atlanticus HTCC2559]
 gi|83849422|gb|EAP87290.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Croceibacter atlanticus HTCC2559]
          Length = 509

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +L +   + +VV+ +SGGVDS+V A LL + 
Sbjct: 206 ELKEKIGEDKVVLGLSGGVDSTVAAVLLHKA 236


>gi|268610221|ref|ZP_06143948.1| hypothetical protein RflaF_12069 [Ruminococcus flavefaciens FD-1]
          Length = 278

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 35/194 (18%)

Query: 22  RVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ V +SGG DS ++A    +L++ G          Y+            + +++   ++
Sbjct: 34  KICVCISGGKDSMLMAKCLQMLEKHG---------TYSFTCKFIVMDPGYSEENLIKIKQ 84

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + + +   V      +   +      S    E   PC  C   ++   L    ++LG 
Sbjct: 85  NAEKLGIPMEV------YSTRIFE----STEKAE-KNPCFLC-ARLRRGWLYKKAQELGC 132

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC--DLRFPLGDMK 196
           + +A GH+    +           +   M         +     +      L  PL  ++
Sbjct: 133 NKIALGHHFDDVIET---------ILMGMLYGSQVQTMMPKLHSENYEGVHLIRPLYLVR 183

Query: 197 KESVRDLAREMGLD 210
           +  + + A E GL+
Sbjct: 184 ESDIINWASENGLE 197


>gi|262306015|gb|ACY45600.1| gln amidotransferase [Armadillidium vulgare]
          Length = 197

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL++   +  VI V +                  ++V      
Sbjct: 45  KVLMLVSGGVDSTVCAALLRKALTEDQVIAVHIDNGF-----------LRKKEVQQVEES 93

Query: 80  CDTINVSHYVFDYEERFRNAV 100
              + +   V     +F + V
Sbjct: 94  LQKLGLKLKVVSAHHQFYDGV 114


>gi|224372822|ref|YP_002607194.1| ExsB protein [Nautilia profundicola AmH]
 gi|254764361|sp|B9L986|QUEC_NAUPA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|223588633|gb|ACM92369.1| ExsB protein [Nautilia profundicola AmH]
          Length = 222

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 38/230 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + VV +SGG+DS+  A + K +GY++I V    Y+ R   +        +   D   +C
Sbjct: 2   KKAVVILSGGMDSTTAAFIAKSEGYEIIPVHF-NYSQRTEKRE------LKAFND---IC 51

Query: 81  DTINVS-HYVFDYEERFRNAV---------IVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           D +N+   Y+ D    F   +         I         G  P+  V     +  S   
Sbjct: 52  DYLNLDNRYIIDI--PFFKQIGASALVDENIDVPVDGVKPGI-PVTYVPFRNGIFLSIAA 108

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +V  + GA+ +  G        V +D       C    ++  Q      T  +   +++ 
Sbjct: 109 AVAEKEGAEAIYIG-------VVEEDSSGYPD-CTEDFIQNMQKAVNSGTKPETNIEIKT 160

Query: 191 PLGDMKKESVRDLAREMGLDIA-------DKSDSQDICFVQQGKYFDVVK 233
           PL  +KKE +   A +  + +        ++ ++  +C   + +     K
Sbjct: 161 PLVHLKKEDIVKTAVKYNVPLHLTWSCYKNEDEACGVCDSCRLRLKGFEK 210


>gi|328349957|emb|CCA36357.1| GMP synthase (glutamine-hydrolysing) [Pichia pastoris CBS 7435]
          Length = 526

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 33/195 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDS+V A L+K      IG     +Y      ++  +    + + D      
Sbjct: 227 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAIYVDNGVMRKNETITVKKTLDDG----- 277

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPC---VDCNRTVKFSDLLSVTRQ 135
            + ++  V D  E+F +    V  P       G T +     V  +   K    +    Q
Sbjct: 278 -LGINLTVVDAGEQFLSQLKGVTDPEKKRKIIGNTFIHVFEKVAADIKPKDGSEIEFLLQ 336

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      I S  + G     +                +   T+     L  PL ++
Sbjct: 337 ----GTLYPDVIESISFKGPSQTIKTHHN------------VGGLTENMKLKLIEPLREL 380

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L + + + 
Sbjct: 381 FKDEVRHLGQLLDIP 395


>gi|260886355|ref|ZP_05897618.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
 gi|330838873|ref|YP_004413453.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
 gi|260863876|gb|EEX78376.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
 gi|329746637|gb|AEB99993.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
          Length = 406

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 69/212 (32%), Gaps = 56/212 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  +VV+A SGG+D+SV+   LK   DG +VI       +  +  +             +
Sbjct: 5   KVKKVVLAYSGGLDTSVIIPWLKENYDGCEVIAA---CVDIGQGDEVAPVHDKALKSGAS 61

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
           +          YV D  + F    + P           Y  G +    +   R      L
Sbjct: 62  KA---------YVEDLTQEFLEDYVWPTLKAQAVYEGKYLLGTSFARPLIAKR------L 106

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           + + ++ GAD +A G                           DQ  F             
Sbjct: 107 VEIAKEEGADAIAHG---------------------ATGKGNDQVRFELTIKALAPNLTI 145

Query: 190 ------FPLGDMKKESVRDLAREMGLDIADKS 215
                 + LG    E + + A++ G+ +A+++
Sbjct: 146 IAPWREWELGART-EEI-EYAKKHGIPVAEEN 175


>gi|188586416|ref|YP_001917961.1| NAD+ synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351103|gb|ACB85373.1| NAD+ synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 250

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 43/189 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V  +SGG+DS+VVAAL K           +++               +D  DA    +  
Sbjct: 33  VTGLSGGIDSAVVAALSK-----------RVFPEDTLGVIMPCYSEPRDEEDALLFAEHH 81

Query: 84  NVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           N++    D  E + + V  +    S+           +    ++ + L    +      L
Sbjct: 82  NINVKNLDLSETYDSMVGKLDDTESTSKMA-----LANIKPRLRMTVLYYYAQTYK--YL 134

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G   +S L +G   K         D   D                  P+    K  V 
Sbjct: 135 VLGTSNKSELILGYFTKY-------GDGAAD----------------LLPIATFTKMEVY 171

Query: 202 DLAREMGLD 210
            LAR++ + 
Sbjct: 172 ALARQLEIP 180


>gi|148642542|ref|YP_001273055.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|148551559|gb|ABQ86687.1| ATP-utilizing enzyme, PP-loop superfamily [Methanobrevibacter
           smithii ATCC 35061]
          Length = 336

 Score = 49.0 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 21/126 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K+ +V +A SGG DS+++A L      D I +T+  +                 +   ++
Sbjct: 15  KNRKVAIAFSGGADSTLLAYLASEVSDDPIAITIDNH-----------IFPTGFIKHCKK 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 + H + D    F                    C  C R + + ++     + G 
Sbjct: 64  TAKEFGIRHQIIDLN--FYEH-------ENLLANKSDRCFVC-RDLMYGNIKKYAEKNGY 113

Query: 139 DVLATG 144
           + +  G
Sbjct: 114 ESVLDG 119


>gi|224038929|gb|ACN38358.1| transcription regulator related protein [Micromonospora inyonensis]
          Length = 236

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 64/206 (31%), Gaps = 25/206 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
                + VV +SGG+DS+ V A+   +GY+   ++ +                  ++  A
Sbjct: 5   PTGKRKAVVLLSGGLDSATVLAMAVHEGYEAHALSFRY-----------GQRHTVELEAA 53

Query: 77  RRVCDTINVSHYVF---DYEE------RFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKF 126
            RV   +  + +V    D              V+   AS+   G E P+  V    T+  
Sbjct: 54  ARVAKALGATRHVVADIDLRVFGGSALTDDTLVVPHHASADEMGDEIPVTYVPARNTIFL 113

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           S  L+    L A  +  G          D                           +Q  
Sbjct: 114 SFALAWAETLDASDIFIGVSALDYSGYPDCRPEYV----AAYETMANLATKAGVEGRQRL 169

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
            +  PL  + K        EMG+D A
Sbjct: 170 RIHTPLIQLTKAETIRRGLEMGVDYA 195


>gi|149921795|ref|ZP_01910241.1| NAD+ synthetase [Plesiocystis pacifica SIR-1]
 gi|149817356|gb|EDM76830.1| NAD+ synthetase [Plesiocystis pacifica SIR-1]
          Length = 331

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDS+V+  LL R           L      +       +      A+   D   V 
Sbjct: 33  LSGGVDSAVMLGLLSRA----------LGPENIVTVYSSIHSSTDSRERAQAAADAFGVP 82

Query: 87  HYVFDYEERFRNAVIV 102
             + D    F   ++ 
Sbjct: 83  LVIVDLTAMFDQLIVD 98


>gi|116327924|ref|YP_797644.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330806|ref|YP_800524.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|4234779|gb|AAD12947.1| unknown [Leptospira borgpetersenii]
 gi|116120668|gb|ABJ78711.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124495|gb|ABJ75766.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 381

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 33/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS +A L K       G+   L++       + +    + + D       +
Sbjct: 74  ILGISGGVDSSYLAYLAKEK----FGLRPLLFHVDAGWNSQEAVNNIEKIVDGL----KL 125

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   V ++EE  ++  +  F +     +TP         V F+ L +   + G   +  
Sbjct: 126 DLITEVVNWEEM-KDLQLSFFRAGVPHLDTPQ------DHVFFASLYNYCAKHGFHYILN 178

Query: 144 GHYIRSR--------LYVGDDGKRRRIMCRPMDLERDQSY-----FLFATTQQQLCDL-- 188
           G    +          Y   D ++ + + R     + +++     F +    +    L  
Sbjct: 179 GGNYSTECIREPLEWHYHASDLRQLKDIHRKFGKRKLKTFPLAGIFKYKIYYRIFKRLKV 238

Query: 189 RFPLGD--MKKES-VRDLAREMG 208
             PL      KE  +R+L    G
Sbjct: 239 VQPLNYVPYTKEEAIRELETNFG 261


>gi|262306061|gb|ACY45623.1| gln amidotransferase [Lepas anserifera]
          Length = 197

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 25/103 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V++ +SGGVDS+V AALL +      V+ V +     RK    +              
Sbjct: 44  QKVLLLVSGGVDSTVCAALLHKALSPEQVVAVHIDNGFMRKNESLQVEQSL--------- 94

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
               I +   V +    F            A G T +P    N
Sbjct: 95  --KRIGLKLRVINARHSF------------ANGSTSIPETGAN 123


>gi|188585551|ref|YP_001917096.1| argininosuccinate synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350238|gb|ACB84508.1| argininosuccinate synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 404

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV    ++   YD   + +            G     +DV  A +   
Sbjct: 6   KVVLAYSGGLDTSVAIKWIQEQ-YDCEVIAM-----------IGDVGQKEDVEAAEQKAY 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDLLSV 132
                  YV + +E F    I P   +    E           P +          L+ +
Sbjct: 54  DTGASKVYVENLQEEFVTDYIYPAMKANIMYEGKYLLGTAICRPLLG-------KKLVEI 106

Query: 133 TRQLGADVLATG 144
             Q  AD +A G
Sbjct: 107 ALQENADAIAHG 118


>gi|315302615|ref|ZP_07873423.1| GMP synthase (glutamine-hydrolyzing) [Listeria ivanovii FSL F6-596]
 gi|313629015|gb|EFR97340.1| GMP synthase (glutamine-hydrolyzing) [Listeria ivanovii FSL F6-596]
          Length = 416

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|262306009|gb|ACY45597.1| gln amidotransferase [Amblyomma sp. 'Amb2']
          Length = 196

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI + +     RK    +               
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALREDQVIALHIDNGFMRKDESVQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
              + +S  + D   +F N
Sbjct: 95  -RQLGLSLRMVDASHQFYN 112


>gi|254564849|ref|XP_002489535.1| GMP synthase, an enzyme that catalyzes the second step in the
           biosynthesis of GMP from IMP [Pichia pastoris GS115]
 gi|238029331|emb|CAY67254.1| GMP synthase, an enzyme that catalyzes the second step in the
           biosynthesis of GMP from IMP [Pichia pastoris GS115]
          Length = 513

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 33/195 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDS+V A L+K      IG     +Y      ++  +    + + D      
Sbjct: 214 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAIYVDNGVMRKNETITVKKTLDDG----- 264

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPC---VDCNRTVKFSDLLSVTRQ 135
            + ++  V D  E+F +    V  P       G T +     V  +   K    +    Q
Sbjct: 265 -LGINLTVVDAGEQFLSQLKGVTDPEKKRKIIGNTFIHVFEKVAADIKPKDGSEIEFLLQ 323

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      I S  + G     +                +   T+     L  PL ++
Sbjct: 324 ----GTLYPDVIESISFKGPSQTIKTHHN------------VGGLTENMKLKLIEPLREL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L + + + 
Sbjct: 368 FKDEVRHLGQLLDIP 382


>gi|295698337|ref|YP_003602992.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Riesia
           pediculicola USDA]
 gi|291157477|gb|ADD79922.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Riesia
           pediculicola USDA]
          Length = 524

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 45/229 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + ++++A SGGVDS V A L+ R  G ++  +                     ++    +
Sbjct: 228 NDQIILAFSGGVDSFVTALLIHRAVGKNLFCIF-----------VDTGLLRLHELERILK 276

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ--- 135
                + +  V   E+RF          +    ++P         +         R+   
Sbjct: 277 YSSRFHFNLIVVSEEDRF--------LRALRNVKSPEKKRMIVGKIFTEIFNEQARKRKN 328

Query: 136 --LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
               A        I S+L +     +     R + +  D+S             +  P+ 
Sbjct: 329 VRWFAQGTIYPDVIESKLVLDQKNIKSHHNVRGL-VGLDKSL-----------KILEPIK 376

Query: 194 DMKKESVRDLARE--------MGLDIADKSDSQDICFVQQGKYFDVVKR 234
           ++ K+ VR++A++         G        S  I    + KY +++++
Sbjct: 377 NLFKDEVREIAKKLEVPKKVIYGHPFPGPGISIRILGCVKKKYCEILRQ 425


>gi|150390002|ref|YP_001320051.1| NAD+ synthetase [Alkaliphilus metalliredigens QYMF]
 gi|254766702|sp|A6TQC4|NADE_ALKMQ RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|149949864|gb|ABR48392.1| NAD+ synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 247

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 35/200 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VVA L+ R            + ++             D+ D   V    
Sbjct: 27  VVGISGGIDSAVVANLIYRA-----------FPNQSLGVILPIRSHQDDIDDGLAVAIAC 75

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGADVLA 142
            + H   + +            S        L   D N+  +  ++L +  R      +A
Sbjct: 76  GIKHTTVNLDNEH-----ENVLSKAINALQKLELYDENKLRISDANLRARLRMSTLYTIA 130

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
                 + L VG D      +      +    Y               P+  + K  V  
Sbjct: 131 NN---VNSLVVGTDNA--AELHTGYFTK----YGDGGVD-------ILPIAGLTKREVYQ 174

Query: 203 LAREMGLD--IADKSDSQDI 220
               +G+   + ++  S  +
Sbjct: 175 WGEYLGVPQSVLNREPSAGL 194


>gi|73670143|ref|YP_306158.1| hypothetical protein Mbar_A2672 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397305|gb|AAZ71578.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 302

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 48/247 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK----ASKRKGSCCAGQDVY 74
           K+  + VA+SGG DSSV   ++    + ++G         +    +     +      + 
Sbjct: 48  KNDMIAVALSGGKDSSVALYIV----HKILG----NRPDIEIVAISVDEGINGYRPHSLE 99

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A+ +   + V H +  ++E              A       C  C    K + L     
Sbjct: 100 VAKSLTKMLGVRHIIKSFKEVHGVT----MDELAAMDREKGACSYCGVLRK-NILNRTAL 154

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF---P 191
           ++GA  L TGH +        D + + I+     L  D    +       +  L     P
Sbjct: 155 EIGATKLVTGHNL--------DDEAQTILL--NHLRGDVERMVRLAPPAAIEGLVLRAKP 204

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251
           L ++ ++ V   A    L +                  D  +   AG AL G+I  L   
Sbjct: 205 LRNIPEKEVALYALVNSLPV------------------DFSECPYAGEALRGEIRELLNN 246

Query: 252 ILGRHNG 258
              +H G
Sbjct: 247 FEAKHPG 253


>gi|189485394|ref|YP_001956335.1| GMP synthase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287353|dbj|BAG13874.1| GMP synthase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 509

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 34/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +V+ A+SGGVDSSV A +L K  G  +I V                     +    R+V 
Sbjct: 214 KVLCALSGGVDSSVAAVMLYKAIGKQLICVY-----------VDHGLQKLGETERVRKVF 262

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
                 +  +   ++ F + +             G T +          F   +   +  
Sbjct: 263 GRMFGKNLIIVSAKKIFLSKLKGITDPEQKRKIIGHTFIEV--------FDGEVKKLK-- 312

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G + L  G        +  D      +       +   + +    ++    L  PL  + 
Sbjct: 313 GINFLLQG-------TIYSDVIESVSIKGAKSPIKSH-HNVGGLPEKMKMKLVEPLRFLF 364

Query: 197 KESVRDLAREMGLD 210
           K+ VR L +E+G+ 
Sbjct: 365 KDEVRVLGKELGVP 378


>gi|157813146|gb|ABV81318.1| putative GMP synthetase [Podura aquatica]
          Length = 220

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           ++ +V++ +SGGVDS+V AALLK+   +  +I V +     RK                 
Sbjct: 42  QNKQVLMLLSGGVDSTVCAALLKKALREDQIIAVHIDNGFLRKNESEN-----------V 90

Query: 77  RRVCDTINVSHYVFDYEERF 96
            +    + +  +V    +RF
Sbjct: 91  EKSLVKLGLKIHVVKAAQRF 110


>gi|148240855|ref|YP_001226242.1| argininosuccinate synthase [Synechococcus sp. WH 7803]
 gi|166221027|sp|A5GPT0|ASSY_SYNPW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|147849394|emb|CAK24945.1| Argininosuccinate synthase [Synechococcus sp. WH 7803]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   RR
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRR 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  + F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALEAGASQSLVGDLIQPFIEEFAFPAIRANALYEGRYPLSTALARPLIARRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|197116761|ref|YP_002137188.1| adenosine nucleotide alpha-hydrolase superfamily protein [Geobacter
           bemidjiensis Bem]
 gi|197086121|gb|ACH37392.1| adenosine nucleotide alpha-hydrolase superfamily protein [Geobacter
           bemidjiensis Bem]
          Length = 268

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 56/200 (28%)

Query: 24  VVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VA SGGVDS+    LLK      G + V+ VT                    ++ +A+R
Sbjct: 22  LVAFSGGVDST---FLLKAAFDTLGAERVLAVT-----------ATSPTYPESELAEAKR 67

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLG 137
           +   I             +  V+            P   C  C   + F       R  G
Sbjct: 68  LATRIGAR----------QELVVSNELEIPGFRHNPKDRCYHCKSEL-FRICTEKARDNG 116

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
              +A G          DD    R         +                +R PL    +
Sbjct: 117 FAFVADG-------SNTDDLGDYRPGRTAACELK----------------VRSPLLEAGL 153

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  +R+L+R +GL   DK 
Sbjct: 154 SKGDIRELSRGLGLPTWDKQ 173


>gi|121534679|ref|ZP_01666500.1| Argininosuccinate synthase [Thermosinus carboxydivorans Nor1]
 gi|121306699|gb|EAX47620.1| Argininosuccinate synthase [Thermosinus carboxydivorans Nor1]
          Length = 405

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 57/210 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
            +VV+A SGG+D+SV+   LK + G +VI +      +      + +    + +   A +
Sbjct: 5   KKVVLAYSGGLDTSVIIPWLKENFGCEVIAMC-----ADVGQGDELAPIREKALKSGASK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           V        Y+ D ++ F    I P           Y  G +        R +    L+ 
Sbjct: 60  V--------YIEDLKKEFIEGYIWPTLKAGAVYEGKYLLGTSFA------RPIIAKALVD 105

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
           V  + GAD +A G                           DQ  F    T + L     +
Sbjct: 106 VALKEGADAVAHG---------------------ATGKGNDQVRF--ELTVKALAPHLKI 142

Query: 189 RFP--LGDMK-KESVRDLAREMGLDIADKS 215
             P  L D++ +E   D A + G+ +    
Sbjct: 143 IAPWRLWDIRSREDAIDYAEKHGIPVPVTK 172


>gi|110677812|ref|YP_680819.1| argininosuccinate synthase [Roseobacter denitrificans OCh 114]
 gi|119361317|sp|Q16D10|ASSY_ROSDO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|109453928|gb|ABG30133.1| argininosuccinate synthase [Roseobacter denitrificans OCh 114]
          Length = 406

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +  S  Y+ D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAEMMGASDIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LV 104

Query: 131 SVTRQLGADVLATG 144
            +  + GAD +A G
Sbjct: 105 EIAEETGADAIAHG 118


>gi|301318272|gb|ADK67051.1| GMP synthase [Stenotrophomonas koreensis]
          Length = 184

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V++ +SGGVDSSVVAALL R  G  +  V                     D   A  
Sbjct: 35  DDEVILGLSGGVDSSVVAALLHRAIGDKLTCVF---------VDTGLLRFQEGDQVMAM- 84

Query: 79  VCDTINVSHYVFDYEERF 96
           + + + V     +  +R+
Sbjct: 85  MAENMGVKVVRVNAADRY 102


>gi|268608249|ref|ZP_06141976.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Ruminococcus flavefaciens FD-1]
          Length = 374

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 30/133 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + R+ V +SGG DS ++A L +         ++V+ + +           +       + 
Sbjct: 133 NDRIAVCISGGKDSMLMAKLFQELKRHDKFPFEVVFLVM-----DPGYSPENRRVIEDN- 186

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   ++++  ++      F + +     S Y   +   PC  C   ++   L S  
Sbjct: 187 ------ARSMSIPVHI------FESTIFD---SVYNIEK--NPCYIC-ARMRRGYLYSKA 228

Query: 134 RQLGADVLATGHY 146
           ++LG + +A GH+
Sbjct: 229 KELGCNKIALGHH 241


>gi|264676785|ref|YP_003276691.1| NAD+ synthetase [Comamonas testosteroni CNB-2]
 gi|262207297|gb|ACY31395.1| NAD+ synthetase [Comamonas testosteroni CNB-2]
          Length = 567

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 13/70 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VVV  SGG+DS++  AL     G D V+G+T+             S  +   V D+  
Sbjct: 299 KQVVVGSSGGIDSALTLALAVDALGADNVVGITM-----------PSSYSSAGSVDDSVL 347

Query: 79  VCDTINVSHY 88
           +C  + +  Y
Sbjct: 348 LCRNLGIRLY 357


>gi|242810560|ref|XP_002485605.1| argininosuccinate synthase [Talaromyces stipitatus ATCC 10500]
 gi|218716230|gb|EED15652.1| argininosuccinate synthase [Talaromyces stipitatus ATCC 10500]
          Length = 416

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V +A SGG+D+SV+   L   GYDV+   +                  +D   A + 
Sbjct: 3  KPKVCLAYSGGLDTSVILKWLIEQGYDVVA-FMA------------DVGQNEDFAAAEKK 49

Query: 80 CDTIN-VSHYVFDYEERFRNA 99
             I  V   V D +  F   
Sbjct: 50 ALAIGAVKFVVEDLKREFVEE 70


>gi|220904367|ref|YP_002479679.1| Argininosuccinate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868666|gb|ACL49001.1| Argininosuccinate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 45/133 (33%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   L    Y  +VI VT  L      S  +              
Sbjct: 5   KKVVLAYSGGLDTSVILKWLIET-YKCEVIAVTADLGQPEDLSGVEEKALKTGASKA--- 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    YV D  E      + P           Y  G          R +    L+ 
Sbjct: 61  ---------YVVDLREEMAKDFVFPMMRGAAIYEGRYLLG------TSIARPLIAKALVD 105

Query: 132 VTRQLGADVLATG 144
           + R+ GAD +A G
Sbjct: 106 IARKEGADAIAHG 118


>gi|167771313|ref|ZP_02443366.1| hypothetical protein ANACOL_02671 [Anaerotruncus colihominis DSM
           17241]
 gi|167666564|gb|EDS10694.1| hypothetical protein ANACOL_02671 [Anaerotruncus colihominis DSM
           17241]
          Length = 406

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK   Y  +VI V         A   +GS   G      + 
Sbjct: 7   KKVVLAYSGGLDTSVIIPWLKEH-YKCEVIAV--------AADVGQGSELDGLREKAIKT 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
               I    Y+ D  E F +  IVP           Y  G +        R +    L+ 
Sbjct: 58  GASKI----YIEDLTEAFVDEFIVPTLKAGAVYEGKYLLGTSFA------RPIIAKRLVE 107

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +A G
Sbjct: 108 IAKKEGADAIAHG 120


>gi|316985540|gb|EFV64487.1| GMP synthase [glutamine-hydrolyzing] [Neisseria meningitidis
           H44/76]
          Length = 330

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 36/116 (31%), Gaps = 38/116 (32%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L  S+                  
Sbjct: 220 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNESKMVMDMF------------ 267

Query: 77  RRVCDTINVSHYVFDYEERFR-----------------NAVIVPFASSYAAGETPL 115
                 + V     D E +F                     I  F +      TP 
Sbjct: 268 ---ARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEKNLPTPN 320


>gi|302524099|ref|ZP_07276441.1| GMP synthase domain-containing protein [Streptomyces sp. AA4]
 gi|302432994|gb|EFL04810.1| GMP synthase domain-containing protein [Streptomyces sp. AA4]
          Length = 518

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 67/197 (34%), Gaps = 34/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V +         +        +D   A  
Sbjct: 218 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVFV----DHGLLRAGERTQVERDFVAAT- 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 V+    D  ERF NA          AG T     +  R +   + + V  Q   
Sbjct: 273 -----GVNLVTVDARERFLNA---------LAGVT---DPEQKRKIIGREFIRVFEQAER 315

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           D+ A G Y           V + G             +            Q   L  PL 
Sbjct: 316 DLKAQGDYRFLVQGTLYPDVVESGGGE-----GTANIKSHHNVGGLPDDLQFE-LVEPLR 369

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR +  E+GL 
Sbjct: 370 LLFKDEVRRVGLELGLP 386


>gi|323143288|ref|ZP_08077981.1| TIGR00268 family protein [Succinatimonas hippei YIT 12066]
 gi|322416969|gb|EFY07610.1| TIGR00268 family protein [Succinatimonas hippei YIT 12066]
          Length = 270

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 63/260 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
             R  +A SGG DS+++   L    +++G  V                  +     +  +
Sbjct: 17  KKRTALAFSGGADSTLLLFELSKLCRKEGGSVYAFY-----------ASTALNPRLEAKE 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  +C + NVS  + +                Y        C  C + + FS + +  RQ
Sbjct: 66  ALNICQSFNVSLEIIEIS-----------VLEYIKNNPINRCYLCKKHI-FSAIANKARQ 113

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-- 193
              DV+  G          DD K  R   +           L          +  PL   
Sbjct: 114 RKCDVIFDG-------TNSDDLKEYRPGIKA----------LHELD------ILSPLALM 150

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           ++ K  VR + +   +  A K  +   C   +  Y   + +           +   G   
Sbjct: 151 NINKTEVRHILKNHDIKTAAKPSAP--CLATRFPYGTCLTQEK---------LDAVGNAE 199

Query: 254 GRHNGIINYTIGQRRGLGVA 273
            +   +  Y +  R    +A
Sbjct: 200 SKIKALGFYNVRVRAHDNIA 219


>gi|220935548|ref|YP_002514447.1| NAD(+) synthase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996858|gb|ACL73460.1| NAD(+) synthase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 334

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 15/73 (20%)

Query: 24 VVAMSGGVDSSVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          ++A+SGGVDS+V AAL  +    G  V G+   L   R +S           V   R V 
Sbjct: 39 IIAISGGVDSAVCAALCVKALGPG-KVFGL---LLPERDSSSNS--------VRLGRMVA 86

Query: 81 DTINVSHYVFDYE 93
          + + + + V D  
Sbjct: 87 EQLGIEYTVEDIA 99


>gi|170028584|ref|XP_001842175.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167876297|gb|EDS39680.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1322

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 23   VVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            V++ +SGGVDS+V AALL+          VI V +     RK                  
Sbjct: 871  VILLVSGGVDSTVCAALLRNALKPEQ---VIAVHIDNGFMRKNESAA-----------VE 916

Query: 78   RVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCN----RTVKFSDLL 130
            +    + V   V D   +F      + VP   S    +TP+ C   +    R +     +
Sbjct: 917  KSLRELGVDLLVRDAFYKFTRGTTTIKVP--GSLYNQDTPMLCQTISPEDKRKIIGDVFV 974

Query: 131  SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQQQLC- 186
             V+ +     +     + +       G  R  +          +  +        + +  
Sbjct: 975  KVSNE-----VLKDLNLNAEEVFLAQGTLRPDLIESASSLVSTKADTIKTHHNDTELIRK 1029

Query: 187  -----DLRFPLGDMKKESVRDLAREMGLD 210
                  +  PL +  K+ VR L  E+GL 
Sbjct: 1030 LREAGRVIEPLQEFHKDEVRQLGYELGLP 1058


>gi|163840499|ref|YP_001624904.1| GMP synthase [Renibacterium salmoninarum ATCC 33209]
 gi|162953975|gb|ABY23490.1| GMP synthase (glutamine-hydrolyzing) [Renibacterium salmoninarum
           ATCC 33209]
          Length = 529

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 45/203 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   V 
Sbjct: 226 KVICGLSGGVDSAVAAALVQRAVGDQLTCVF-----VDHGLLREGEAEQVE--RDFVAVT 278

Query: 81  DTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNRTVKFS 127
               V+ YV    +RF +A   V  P          F  S+   E               
Sbjct: 279 ---GVNLYVAREADRFLDALAGVSDPETKRKIIGREFIRSFEEAE--------------R 321

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L++   Q G  +            V   G       +           +         D
Sbjct: 322 ALVAQAGQDGEQIKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPDDLQFD 374

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR +  ++GL 
Sbjct: 375 LVEPLRALFKDEVRSVGAQLGLP 397


>gi|291222319|ref|XP_002731165.1| PREDICTED: guanine monophosphate synthetase-like [Saccoglossus
           kowalevskii]
          Length = 578

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQL 54
           D +V+  +SGGVDS+V AALL +      VI V +  
Sbjct: 128 DHKVLALVSGGVDSTVCAALLHKALDNSQVIAVHIDN 164


>gi|312115903|ref|YP_004013499.1| argininosuccinate synthase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221032|gb|ADP72400.1| argininosuccinate synthase [Rhodomicrobium vannielii ATCC 17100]
          Length = 409

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 28/140 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +       +VV+A SGG+D+S++   L+   G +V+  T                  G++
Sbjct: 1   MSDKKSIKKVVLAYSGGLDTSIILKWLQVTYGCEVVTFT-------------ADLGQGEE 47

Query: 73  VYDARRVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTV 124
           +  ARR  + + +   Y+ D  E F    + P   +       Y  G +    +   R +
Sbjct: 48  LEPARRKAELLGIQQIYIEDLREEFVRDYVFPMFRANAVYEGIYLLGTSIARPLIAKRQI 107

Query: 125 KFSDLLSVTRQLGADVLATG 144
                  +  + GAD +  G
Sbjct: 108 ------EIAHETGADAVCHG 121


>gi|88597669|ref|ZP_01100902.1| exsB protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88189973|gb|EAQ93949.1| exsB protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315928446|gb|EFV07758.1| thiamine biosynthesis family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 224

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 78/203 (38%), Gaps = 31/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++GY++I +    ++  + ++ K   C        +++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEGYEIIALH---FDYEQRTQEKEKECF-------KQIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN----RTVKF--SDLLSV- 132
             + V   Y+ D    F   +     +  +           +      V F     LS+ 
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFRNGIFLSIA 110

Query: 133 ---TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                +   + +  G        V +DG      C    +++ Q +    T++     ++
Sbjct: 111 GSLAEKENCESVFIG-------VVEEDGSGYPD-CTDEFIQKAQEFINEGTSKNFKVCIK 162

Query: 190 FPLGDMKKESVRDLAREMGLDIA 212
            PL  + K  + +LA +  + + 
Sbjct: 163 TPLVRLNKAKIVELALKENVPLE 185


>gi|260585060|ref|ZP_05852802.1| ExsB protein [Granulicatella elegans ATCC 700633]
 gi|260157256|gb|EEW92330.1| ExsB protein [Granulicatella elegans ATCC 700633]
          Length = 214

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 67/204 (32%), Gaps = 40/204 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V +SGGVDSS   +L       V  +          S          ++  AR++ 
Sbjct: 1   MK-LVLLSGGVDSSTALSLALSQDPQVEAI----------SFSYNQKHKELELEAARKIA 49

Query: 81  DTINVSHYVFDYEERFRNAV--------IVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               V H + +    F  +         I      YA        V+    +  S L  +
Sbjct: 50  AYYKVPHQILEVSSIFSGSKSSLNAGNDIEVSTGDYATQTEANTEVEFRNGIFISILAGI 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-QLC----- 186
             Q GA  +  G ++       DD       C P         F+ A  Q  QL      
Sbjct: 110 AMQKGASEIYFGAHL-------DDSGVIYPDCSPE--------FIEAMNQAVQLGSGGKV 154

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  P G +KK+ +     E+G+ 
Sbjct: 155 RLTAPFGQVKKKDIVAKGVELGVP 178


>gi|237744259|ref|ZP_04574740.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 7_1]
 gi|229431488|gb|EEO41700.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 7_1]
          Length = 258

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  VEDLKINSKTIE---------ITDMIDAYFKNEKEATSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|163732978|ref|ZP_02140422.1| argininosuccinate synthase [Roseobacter litoralis Och 149]
 gi|161393513|gb|EDQ17838.1| argininosuccinate synthase [Roseobacter litoralis Och 149]
          Length = 406

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +  S  Y+ D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAEMMGASDIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LV 104

Query: 131 SVTRQLGADVLATG 144
            +  + GAD +A G
Sbjct: 105 EIAEETGADAIAHG 118


>gi|313202055|ref|YP_004040713.1| exsb protein [Methylovorus sp. MP688]
 gi|312441371|gb|ADQ85477.1| exsB protein [Methylovorus sp. MP688]
          Length = 225

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V A+ +  GY+   ++L  +    A            +  A+RV 
Sbjct: 3  KKAVVLLSGGLDSATVLAIARSQGYECYCLSLDYHQRHSAE-----------LLAAQRVA 51

Query: 81 DTIN 84
          + + 
Sbjct: 52 ECLG 55


>gi|110004286|emb|CAK98624.1| gmp synthase [glutamine-hydrolyzing] protein [Spiroplasma citri]
          Length = 512

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 56/224 (25%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           ++E     + ++        VV+A+SGGVDSSV A LL +  G  +  +           
Sbjct: 198 ITEFISTATTEIKGKVGSDNVVLALSGGVDSSVCAVLLHKAIGKQLTCIF---------- 247

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLP 116
              G         D ++             ++E+F+  +I       F ++   G T  P
Sbjct: 248 VDTGLLRQDSGWNDLQK-------------FQEKFKLNIIKIAAQERFLTA-LKGVT-NP 292

Query: 117 C----VDCNRTVKFSDLLSVTRQ------LGADVLATGHYIRSRLYVGDDGKRRRIMCRP 166
                +  N  +          +      LG   +     I S    G     +      
Sbjct: 293 EQKRKIIGNLFI--EIFNEEAIKIKNVKWLGQGTI-YPDVIESISVKGPSATIKSHHN-- 347

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                     +    +     L  PL ++ K+ VR     +G+D
Sbjct: 348 ----------VGGLPKNLPFQLIEPLRELFKDEVRRTGEALGID 381


>gi|331003353|ref|ZP_08326856.1| GMP synthase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412623|gb|EGG92008.1| GMP synthase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 517

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+ A+SGGVDSSV A +L +  G ++  V     +     K +G         +   
Sbjct: 218 NGKVLCALSGGVDSSVAAVMLSKAVGDNLTCVF---VDHGLLRKNEGDEVEAVFGPNG-- 272

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 ++    +  ERF      V  P       GE                     ++
Sbjct: 273 ---NYKLNFIRVNAAERFYAKLAGVSEPEKKRKVIGEEF-----------IRVFEEEAKK 318

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +G  D L  G      +  G  G+   I        +               ++  PL D
Sbjct: 319 IGKVDFLVQGTIYPDIVESGLGGESVVI--------KSHHNVGGLPDYVDFKEIIEPLRD 370

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR    E+G+ 
Sbjct: 371 LFKDEVRKAGLELGIP 386


>gi|325181184|emb|CCA15598.1| unnamed protein product [Albugo laibachii Nc14]
 gi|325181887|emb|CCA16342.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 422

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 26/137 (18%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +     +VV+A SGG+D+S++   L   G++VI                     G+D   
Sbjct: 4   QAKSGEKVVLAYSGGLDTSIILKWLANKGFEVIC------------YCANVGQHGEDYTK 51

Query: 76  ARRVCDTIN-VSHYVFDYEERF-----RNAVIVPFASS--YAAGETPLPCVDCNRTVKFS 127
            +     +     Y+ D    F       AV         Y  G +    V   + V   
Sbjct: 52  VKEKALALGATKVYIEDLRSEFVEDFIFEAVKANAIYESRYLLGTSLARPVIAKKQV--- 108

Query: 128 DLLSVTRQLGADVLATG 144
               + ++ GA  +A G
Sbjct: 109 ---EIAQKEGASYVAHG 122


>gi|312143091|ref|YP_003994537.1| argininosuccinate synthase [Halanaerobium sp. 'sapolanicus']
 gi|311903742|gb|ADQ14183.1| argininosuccinate synthase [Halanaerobium sp. 'sapolanicus']
          Length = 404

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV    L+   YD   +T                   QD  +      
Sbjct: 10  KILLAYSGGLDTSVAIKWLQDK-YDAEIIT-----------YTADLGQKQDWDEVEAKAL 57

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  Y+ D  E F    + P     A  +   P      R +    ++ V ++   D
Sbjct: 58  KTGASKAYIDDIREEFITDYVYPALKVNALYQEKYPLATALARPLIAKRMVEVAKKENVD 117

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL---GDMK 196
            LA G                    +  D  R +  F     +  +     PL   G   
Sbjct: 118 ALAHG-----------------CTGKGNDQVRFEVTFKALAPELAI---LAPLRDWGFTS 157

Query: 197 KESVRDLAREMGLDIADKSDS 217
           ++   + A E  +D+    DS
Sbjct: 158 RDDEIEYAAENNIDVKATKDS 178


>gi|300088033|ref|YP_003758555.1| argininosuccinate synthase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527766|gb|ADJ26234.1| argininosuccinate synthase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+S     LK   Y  DVI +T+ + N R  +  +        V      
Sbjct: 4   KVVLAYSGGIDTSAAIPWLKEH-YDMDVIALTVDVGNERDFTVIRDKALKAGAV------ 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
              +     V D +  F +  + P  ++ A  E   P      R +    ++ V R+ GA
Sbjct: 57  -KAL-----VMDAKREFVDEYLFPALAAGALYENEYPLATALGRPLIAKLMVDVAREEGA 110

Query: 139 DVLATG 144
             +A G
Sbjct: 111 TAIAHG 116


>gi|301092082|ref|XP_002896214.1| GMP synthase [glutamine-hydrolyzing], putative [Phytophthora
           infestans T30-4]
 gi|262094895|gb|EEY52947.1| GMP synthase [glutamine-hydrolyzing], putative [Phytophthora
           infestans T30-4]
          Length = 443

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 56/200 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +  V+ A+SGGVDSSV A LL+R                              V D  R+
Sbjct: 230 EGHVIGAVSGGVDSSVAAVLLQRA----------------------LGDRFHAVVD--RL 265

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              + ++    D  +RF      V  P +     G                       ++
Sbjct: 266 QSKLGINLKCIDASDRFLAALKGVKEPESKRKTIGNLF-----------IELFQEEAERI 314

Query: 137 G--ADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           G   D L         I S  Y G     +         E+                L  
Sbjct: 315 GHPVDFLLQGTLYPDVIESISYKGPSATIKTHHNVGGLPEKMH------------LKLIE 362

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR+L   +G+D
Sbjct: 363 PLRELFKDEVRELGMALGID 382


>gi|29349966|ref|NP_813469.1| hypothetical protein BT_4558 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569663|ref|ZP_04847072.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29341877|gb|AAO79663.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840044|gb|EES68126.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 248

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRD-----GYDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL KR       + VI V   +                  
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGKRARIYKPRFSVIAVHVVMNNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  CD+  V    ++           P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAYCDSFGVPFVQYETS-------FDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEQGCNKIALGHH 140


>gi|291277171|ref|YP_003516943.1| PP-loop family protein [Helicobacter mustelae 12198]
 gi|290964365|emb|CBG40215.1| Putative PP-loop family protein [Helicobacter mustelae 12198]
          Length = 254

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            +  +V++ +SGG DS ++A +L+R         +Q +   K   +        G+D   
Sbjct: 25  NEGDKVLLGLSGGKDSILLACILER---------MQRHAPFKFEFKAVTIHYGLGEDFSY 75

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +C    + H +      +  ++          G +   C  C+R ++   L +  ++
Sbjct: 76  LTEICQRQGIPHEI------YHTSIAETIREKRREGSSY--CSFCSR-MRRGALYNKAKE 126

Query: 136 LGADVLATGHYI 147
           LG + +A  H++
Sbjct: 127 LGYNKVAIAHHL 138


>gi|284051648|ref|ZP_06381858.1| NAD synthetase [Arthrospira platensis str. Paraca]
 gi|291566403|dbj|BAI88675.1| probable glutamine-dependent NAD(+) synthetase [Arthrospira
           platensis NIES-39]
          Length = 565

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 13/67 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VAA+     G   V+GV +                +   + DA  +
Sbjct: 308 KVVIGLSGGIDSSLVAAIATEALGSQQVLGVLM-----------PSPYSSEHSIEDALDL 356

Query: 80  CDTINVS 86
              + +S
Sbjct: 357 AKNLGIS 363


>gi|224417967|ref|ZP_03655973.1| asparagine synthase (glutamine-hydrolyzing) [Helicobacter
           canadensis MIT 98-5491]
 gi|253827304|ref|ZP_04870189.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
 gi|313141510|ref|ZP_07803703.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
 gi|253510710|gb|EES89369.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
 gi|313130541|gb|EFR48158.1| asparagine synthase [Helicobacter canadensis MIT 98-5491]
          Length = 625

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 17/86 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV---TLQLYNSRKASKRKGSCCAGQDVYD 75
            D+ V V +SGGVDSS+V A+LK  GYD        +      ++S  +G          
Sbjct: 258 SDVNVGVCLSGGVDSSLVCAVLKESGYDFETFSISFM------ESSFNEG--------NY 303

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVI 101
           A+++ + + V ++ F         +I
Sbjct: 304 AKKIANILGVKNHQFLCSLEEAQNII 329


>gi|163737975|ref|ZP_02145391.1| Argininosuccinate synthase [Phaeobacter gallaeciensis BS107]
 gi|163742629|ref|ZP_02150015.1| argininosuccinate synthase [Phaeobacter gallaeciensis 2.10]
 gi|161384214|gb|EDQ08597.1| argininosuccinate synthase [Phaeobacter gallaeciensis 2.10]
 gi|161388591|gb|EDQ12944.1| Argininosuccinate synthase [Phaeobacter gallaeciensis BS107]
          Length = 408

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARQ 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKPENIFIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD +A G
Sbjct: 105 LVEIAEATGADAVAHG 120


>gi|303243602|ref|ZP_07329944.1| argininosuccinate synthase [Methanothermococcus okinawensis IH1]
 gi|302486163|gb|EFL49085.1| argininosuccinate synthase [Methanothermococcus okinawensis IH1]
          Length = 417

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 39/203 (19%)

Query: 19  KDMRVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++ V A SGG+D+S    LL+    Y V+            S         +D+ + 
Sbjct: 21  EKEKIAVLAYSGGLDTSCCLKLLEDKYNYKVV------------SACVDVGQPEEDLKEP 68

Query: 77  RRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTR 134
                   V +HY  D +E F    I     + A  E  PL        +    L+ + R
Sbjct: 69  EEKAKKYGVYAHYTIDAKEEFARDYIFRAIKANAMYEGYPLSTSLARPLIALK-LVELAR 127

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +L AD +A G         G+D  R   + R    + +               +  P+ D
Sbjct: 128 ELNADAIAHG-----CTGKGNDQFRFETIIRAKAPDME---------------VIAPIRD 167

Query: 195 --MKKESVRDLAREMGLDIADKS 215
             + +    + A++ G+ I  +S
Sbjct: 168 LNLTRNEEIEYAKQNGIPIPTES 190


>gi|118576121|ref|YP_875864.1| argininosuccinate synthase [Cenarchaeum symbiosum A]
 gi|118194642|gb|ABK77560.1| argininosuccinate synthase [Cenarchaeum symbiosum A]
          Length = 394

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 17/128 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + V+A SGG+D+SVVA +L+  G                         G D       
Sbjct: 2   GGKAVLAFSGGLDTSVVARMLQDRG-------------MDVVTVTVDVGQGGDYRRVAAK 48

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC--NRTVKFSDLLSVTRQL 136
              +  V H   D    F    ++P   + A  +    C+     R +    LL V R+ 
Sbjct: 49  SRRLGAVKHRHIDARAEFATRYVIPAIKANALYQGKY-CLATALARPLIAVKLLEVARKE 107

Query: 137 GADVLATG 144
           GA  LA G
Sbjct: 108 GAKALAHG 115


>gi|330936961|gb|EGH41067.1| GMP synthase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 288

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRK 59
           V++ +SGGVDSSVVAALL +  G  +  V      L+L+   +
Sbjct: 230 VLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGEQ 272


>gi|313624201|gb|EFR94264.1| GMP synthase (glutamine-hydrolyzing) [Listeria innocua FSL J1-023]
          Length = 514

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|225405609|ref|ZP_03760798.1| hypothetical protein CLOSTASPAR_04830 [Clostridium asparagiforme
           DSM 15981]
 gi|225042873|gb|EEG53119.1| hypothetical protein CLOSTASPAR_04830 [Clostridium asparagiforme
           DSM 15981]
          Length = 513

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 43/207 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           L +   D +V+ A+SGGVDSSV A +L +  G  +  V     +     K +G       
Sbjct: 209 LREKIGDGKVLCALSGGVDSSVAAVMLSKAVGKQLTCVF---VDHGLLRKNEGD------ 259

Query: 73  VYDARRVCDTIN---VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK---- 125
             +   V        ++    + +ERF   +           E P       R +     
Sbjct: 260 --EVEAVFGPNGPYQLNFIRVNAQERFYEKL--------KGAEEPE----QKRKIIGEEF 305

Query: 126 FSDLLSVTRQLGA-DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
                   +++GA D    G        V + G  +  + +           +    +  
Sbjct: 306 IRVFEEEAKKIGAVDFFVQG---TIYPDVIESGLGKSAVIKSHHN-------VGGLPEHV 355

Query: 185 -LCDLRFPLGDMKKESVRDLAREMGLD 210
              ++  PL  + K+ VR    E+G+ 
Sbjct: 356 DFKEIVEPLRLLFKDEVRKAGLELGIP 382


>gi|313619458|gb|EFR91158.1| GMP synthase (glutamine-hydrolyzing) [Listeria innocua FSL S4-378]
          Length = 518

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|313894426|ref|ZP_07827991.1| argininosuccinate synthase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441250|gb|EFR59677.1| argininosuccinate synthase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 403

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+SV+   LK + G +VI V + L         +             
Sbjct: 3   KANKVVLAYSGGLDTSVIIPWLKENYGSEVIAVCVDLGQPEDYDAVEKKAIKSGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D +E F    + P           Y  G +   P +          L
Sbjct: 61  ----------YIVDAKEEFVKDYVWPTVKAGAVYEGKYLLGTSFARPLIG-------KIL 103

Query: 130 LSVTRQLGADVLATG 144
           + +  + GAD +A G
Sbjct: 104 VDIAEKEGADAIAHG 118


>gi|295395453|ref|ZP_06805652.1| argininosuccinate synthase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971775|gb|EFG47651.1| argininosuccinate synthase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 402

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV    ++   G +V+   + +         +      Q   D   V 
Sbjct: 4   RIVLAYSGGLDTSVAIGWIQEATGAEVVA--MAV---DVGQGGEALDTIRQRALDCGAV- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  YV D  + F N   +P   +        P V   +R V    L++  +Q GA 
Sbjct: 58  -----EAYVADARDEFANEYCMPGLKANTLYMGAYPNVSALSRPVIAKHLVAAAKQFGAS 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGD--MK 196
            ++ G                   C       DQ  F  A T          P+ D  + 
Sbjct: 113 TVSHG-------------------CTGK--GNDQVRFEVAITSLAPELKTIAPVRDLALT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E+  + A    L I    ++
Sbjct: 152 REAAIEYAERNELPIVTTKNN 172


>gi|119575283|gb|EAW54888.1| hCG40893, isoform CRA_c [Homo sapiens]
          Length = 403

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SG +D+S     LK  GYDVI   L                  +D  +AR+    
Sbjct: 14  VVLAYSGSLDTSCTLLWLKEQGYDVIA-YLANI------------GQKEDFEEARKNALK 60

Query: 83  INV-SHYVFDYEERFRNAVIVPFASS 107
                 ++ D    F    I P   S
Sbjct: 61  FGAKKVFIEDVGREFVEEFIWPAIQS 86


>gi|119575282|gb|EAW54887.1| hCG40893, isoform CRA_b [Homo sapiens]
          Length = 213

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SG +D+S     LK  GYDVI   L                  +D  +AR+    
Sbjct: 7   VVLAYSGSLDTSCTLLWLKEQGYDVIA-YLANI------------GQKEDFEEARKNALK 53

Query: 83  INV-SHYVFDYEERFRNAVIVPFASS 107
                 ++ D    F    I P   S
Sbjct: 54  FGAKKVFIEDVGREFVEEFIWPAIQS 79


>gi|308812868|ref|XP_003083741.1| COG0137: Argininosuccinate synthase (ISS) [Ostreococcus tauri]
 gi|116055622|emb|CAL58290.1| COG0137: Argininosuccinate synthase (ISS) [Ostreococcus tauri]
          Length = 451

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 66/201 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR  
Sbjct: 53  KKVVLAYSGGLDTSIILKWLQDTYGCEVVTFT-------------ADLGQGEELEPARAK 99

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
              + V      D  E F    + P           Y  G +    +   R +       
Sbjct: 100 AQQMGVKEIFIDDLREEFVRDYVFPMFRANAVYEGKYLLGTSIARPLISKRQI------E 153

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           + + +GAD +  G                           DQ              +RF 
Sbjct: 154 IAKMVGADAVCHG---------------------ATGKGNDQ--------------VRFE 178

Query: 192 LGDM-KKESVRDLA--REMGL 209
           LG    K  V+ +A  RE  L
Sbjct: 179 LGYYGLKPDVKVIAPWREWDL 199


>gi|307182454|gb|EFN69689.1| Argininosuccinate synthase [Camponotus floridanus]
          Length = 414

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 29/134 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V++A SGG+D+S +   LK+ G+ VI     +                      R  
Sbjct: 5   KKKVILAYSGGLDTSCILFWLKKKGFQVIAYVANIGQDEDFDA-------------VREK 51

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPL-PCVDCNRTVKFSDLL 130
              I  +   + D +E F  + + P  +        Y  G +   PC+          L+
Sbjct: 52  ALKIGAIKVVIDDLKEVFVTSYVWPAVACGLLYEGRYLLGTSVARPCISQG-------LV 104

Query: 131 SVTRQLGADVLATG 144
            + +  GA+++A G
Sbjct: 105 KLAKAEGANIIAHG 118


>gi|301318290|gb|ADK67060.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
          D  V++ +SGGVDSSVVAALL +  G  +  V 
Sbjct: 35 DDEVILGLSGGVDSSVVAALLHKAIGEKLTCVF 67


>gi|299529607|ref|ZP_07043044.1| NAD+ synthetase [Comamonas testosteroni S44]
 gi|298722470|gb|EFI63390.1| NAD+ synthetase [Comamonas testosteroni S44]
          Length = 567

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV  SGG+DS++  AL     G D V+G+T+             S  +   V D+  +C
Sbjct: 301 VVVGSSGGIDSALTLALAVDALGADNVVGITM-----------PSSYSSAGSVDDSVLLC 349

Query: 81  DTINVSHY 88
             + +  Y
Sbjct: 350 RNLGIRLY 357


>gi|88803328|ref|ZP_01118854.1| putative argininosuccinate synthase [Polaribacter irgensii 23-P]
 gi|88780894|gb|EAR12073.1| putative argininosuccinate synthase [Polaribacter irgensii 23-P]
          Length = 393

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V+A SGG+D+S  A  L ++ Y+V  V                  +  ++       
Sbjct: 2   KKLVIAYSGGLDTSYCAVSLSKE-YEVHAV-----------SVNTGGFSEDEIKHIESNA 49

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLGA 138
             + V++Y   D    F   V+              P       +  +  ++   + +GA
Sbjct: 50  YKMGVTNYKNIDAVATFYQKVVKYLIFGNVLKNNSYPLSVSAERIIQAIEIVEYAKSIGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 AYIAHG 115


>gi|315608621|ref|ZP_07883602.1| GMP synthase [Prevotella buccae ATCC 33574]
 gi|315249660|gb|EFU29668.1| GMP synthase [Prevotella buccae ATCC 33574]
          Length = 514

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 ELKRQLGNDRVILGLSGGVDSSVCATLLNKAIGKNLTCIF---VDHGMLRKNE------- 255

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    + + ++    D  ++F              G T     +  R +   D + 
Sbjct: 256 -FKKVMEAYEGLGLNVVGVDASDKFFKD---------LEGVT---DPEKKRKIIGRDFVE 302

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 303 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 348

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  E+G+ 
Sbjct: 349 EMHLQLCEPLQWLFKDEVRRVGYELGMP 376


>gi|323342676|ref|ZP_08082908.1| GMP synthase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463788|gb|EFY08982.1| GMP synthase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 510

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  V+ A+SGGVDS+VVAALL    +  IG  +T    +     K +             
Sbjct: 215 NEHVICALSGGVDSAVVAALL----HHAIGDQLTCIFVDHGLLRKGEADSVVEVFQ---- 266

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136
              D   ++    D + RF + +                 +  N  +        T++L 
Sbjct: 267 ---DHFKMNLIKVDAQRRFLDKLAGVDDPEKKRK------IIGNEFIYV--FEDETKKLR 315

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A  LA G        V + G +     +           +    +     L  PL  + 
Sbjct: 316 DAKWLAQG---TLYTDVIESGTKTAQTIKSHHN-------VGGLPEDMDFKLIEPLDTLF 365

Query: 197 KESVRDLAREMGLD 210
           K+ VR L   +GL 
Sbjct: 366 KDEVRKLGLVLGLP 379


>gi|218135010|ref|ZP_03463814.1| hypothetical protein BACPEC_02915 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990395|gb|EEC56406.1| hypothetical protein BACPEC_02915 [Bacteroides pectinophilus ATCC
           43243]
          Length = 166

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 30/127 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDAR 77
           V VA S GVDS+    LLK      G +VI VT +            SC    +++ +A 
Sbjct: 37  VAVAFSSGVDST---FLLKTAKDTLGDNVIAVTAR------------SCSFPGRELNEAL 81

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             C    + H    +        I  F     A      C  C + + F  +  +  + G
Sbjct: 82  EFCKKEGIRH----FVCESEELSIDGF-----AQNPKNRCYLCKKEL-FRKIQEIADENG 131

Query: 138 ADVLATG 144
              +A G
Sbjct: 132 IAAIAEG 138


>gi|198276045|ref|ZP_03208576.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135]
 gi|198271674|gb|EDY95944.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135]
          Length = 426

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 20/125 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGG DS  +  +L R GY         +   + S R        D    R + +
Sbjct: 21  KVLVALSGGADSVALLRVLLRLGYACEAAHCNFHLRGEESVR--------DERFVRALAE 72

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V  +V  +             ++YAA    +      R +++     + ++ GA V+
Sbjct: 73  RLGVPLHVIHF-----------DTNAYAASHN-VSVEMAARELRYDWFTKLRQECGAKVV 120

Query: 142 ATGHY 146
           A  H+
Sbjct: 121 AVAHH 125


>gi|149278290|ref|ZP_01884428.1| argininosuccinate synthetase [Pedobacter sp. BAL39]
 gi|149231056|gb|EDM36437.1| argininosuccinate synthetase [Pedobacter sp. BAL39]
          Length = 397

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S     L +  G +V  V   + N+   S+ +        + +  +
Sbjct: 2   KKKVVLAFSGGLDTSFCCIYLAQDRGLEVHSV---IVNTGGFSEEE--------LQEIEK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQL 136
               + V SH V D    + +  I              P       V + + + +  +++
Sbjct: 51  RAYALGVASHAVVDETANYYDGCIKYLVFGNVLKNATYPLSVSAERVSQATAIANYVKKI 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADYVAHG 118


>gi|2625092|gb|AAB86624.1| argininosuccinate synthetase [Corynebacterium glutamicum]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+V+A SGG+D++V    LK+  DG +VI V+L L    +           Q   DA   
Sbjct: 4   RIVLAYSGGLDTTVAIPYLKKMIDG-EVIAVSLDLGQGGENMDN-----VRQRALDA-GA 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            ++I     V D ++ F     +P   +        P V   +R +    L+   +Q   
Sbjct: 57  AESI-----VVDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAGKQFNG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 THVAHG 117


>gi|20095127|ref|NP_614974.1| ATPase [Methanopyrus kandleri AV19]
 gi|19888425|gb|AAM02904.1| Predicted ATPase of the PP-loop superfamily implicated in cell
          cycle control [Methanopyrus kandleri AV19]
          Length = 264

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 17/89 (19%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL---QLYNSRKASKRKGSCCAG 70
          L K     ++ V +SGG+DS+V   +L+    DV G+ +    ++ + +           
Sbjct: 4  LRKKVSGKKICVLISGGMDSAVATKILQLSNTDVRGLHITHRWMWFTPE----------- 52

Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNA 99
              + +R+   + +   V D  +  R  
Sbjct: 53 ---IEIKRISKMLGIKIDVVDITDELRRR 78


>gi|19552617|ref|NP_600619.1| argininosuccinate synthase [Corynebacterium glutamicum ATCC 13032]
 gi|62390285|ref|YP_225687.1| argininosuccinate synthase [Corynebacterium glutamicum ATCC 13032]
 gi|21903372|sp|O85176|ASSY_CORGL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|21324168|dbj|BAB98793.1| Argininosuccinate synthase [Corynebacterium glutamicum ATCC 13032]
 gi|41325622|emb|CAF21411.1| ARGININOSUCCINATE SYNTHASE [Corynebacterium glutamicum ATCC 13032]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+V+A SGG+D++V    LK+  DG +VI V+L L    +           Q   DA   
Sbjct: 4   RIVLAYSGGLDTTVAIPYLKKMIDG-EVIAVSLDLGQGGENMDN-----VRQRALDA-GA 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            ++I     V D ++ F     +P   +        P V   +R +    L+   +Q   
Sbjct: 57  AESI-----VVDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAGKQFNG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 THVAHG 117


>gi|308067478|ref|YP_003869083.1| NH(3)-dependent NAD(+) synthetase [Paenibacillus polymyxa E681]
 gi|305856757|gb|ADM68545.1| NH(3)-dependent NAD(+) synthetase [Paenibacillus polymyxa E681]
          Length = 269

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 53/204 (25%)

Query: 24  VVAMSGGVDSSVVAALLK--------RDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++A+SGG+DS+V AAL K          G  Y  +GV                    +D+
Sbjct: 43  LIAISGGIDSAVAAALCKRATDELTQEQGDEYKTLGVF-------------QPYGQQEDI 89

Query: 74  YDARRVCDTINVSH--YVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             +  V    ++ +       E   + AV +     +     +  P V  N   +   ++
Sbjct: 90  EHSYAVAKAFDLKYAGETNIKEAVDKVAVEVEHTLKNIGLERSITPQVRGNVKARTRMVV 149

Query: 131 SVTR--QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 +L   V+ T H   +       G   +     +D                    
Sbjct: 150 QYALANELNLLVVGTDHASEAIT-----GFYTKWGDGAVD-------------------- 184

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL  + K  VR LA  +G+  A
Sbjct: 185 ITPLSTLNKRQVRLLASYLGVPQA 208


>gi|257888633|ref|ZP_05668286.1| PP-loop family protein [Enterococcus faecium 1,141,733]
 gi|293378830|ref|ZP_06624985.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
 gi|257824687|gb|EEV51619.1| PP-loop family protein [Enterococcus faecium 1,141,733]
 gi|292642371|gb|EFF60526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
          Length = 484

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 43/207 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K+ R++ A+SGGVDS V+  LL +     G+  +GV    +  R+ S  + +        
Sbjct: 32  KESRILAAVSGGVDSMVLLHLLLQAQRQIGFS-LGVVHINHQLREESAEEAAYL------ 84

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R  C+  N+  YV         +V           +T +     N   ++     V  
Sbjct: 85  --RSYCEKKNLPLYV---------SVWEN------PAKTAIETAARN--FRYQAFTRVME 125

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFP 191
           +   D L T H+       GDD     +M     +   Q          Q      L  P
Sbjct: 126 EGQYDTLMTAHH-------GDDQIETVLMK---IIRGGQLSTFSGIKGVQPFATGRLVRP 175

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQ 218
           L    KE +   A E  L   +   +Q
Sbjct: 176 LLSFSKEELYAYAAESQLVYFEDQTNQ 202


>gi|254000096|ref|YP_003052159.1| exsB protein [Methylovorus sp. SIP3-4]
 gi|253986775|gb|ACT51632.1| exsB protein [Methylovorus sp. SIP3-4]
          Length = 225

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V A+ +  GY+   ++L  +    A            +  A+RV 
Sbjct: 3  KKAVVLLSGGLDSATVLAIARSQGYECYCLSLDYHQRHSAE-----------LLAAQRVA 51

Query: 81 DTIN 84
          + + 
Sbjct: 52 ECLG 55


>gi|227552665|ref|ZP_03982714.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
 gi|257897412|ref|ZP_05677065.1| PP-loop family protein [Enterococcus faecium Com12]
 gi|227178194|gb|EEI59166.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
 gi|257833977|gb|EEV60398.1| PP-loop family protein [Enterococcus faecium Com12]
          Length = 481

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 43/207 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K+ R++ A+SGGVDS V+  LL +     G+  +GV    +  R+ S  + +        
Sbjct: 29  KESRILAAVSGGVDSMVLLHLLLQAQRQIGFS-LGVVHINHQLREESAEEAAYL------ 81

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R  C+  N+  YV         +V           +T +     N   ++     V  
Sbjct: 82  --RSYCEKKNLPLYV---------SVWEN------PAKTAIETAARN--FRYQAFTRVME 122

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFP 191
           +   D L T H+       GDD     +M     +   Q          Q      L  P
Sbjct: 123 EGQYDTLMTAHH-------GDDQIETVLMK---IIRGGQLSTFSGIKGVQPFATGRLVRP 172

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQ 218
           L    KE +   A E  L   +   +Q
Sbjct: 173 LLSFSKEELYAYAAESQLVYFEDQTNQ 199


>gi|224418112|ref|ZP_03656118.1| hypothetical protein HcanM9_02431 [Helicobacter canadensis MIT
           98-5491]
 gi|253827439|ref|ZP_04870324.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141647|ref|ZP_07803840.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510845|gb|EES89504.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130678|gb|EFR48295.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 257

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +  RV++ +SGG DS ++A LL R   Y         +  +  +   G     + +++ 
Sbjct: 26  KEGDRVLLGLSGGKDSILLATLLARLKKYAPF-----NFEFKALTVDYGRGGEYEYIFEY 80

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              C+ + + +      E +R  +            +   C  C+R ++   L S   + 
Sbjct: 81  ---CEKLGIPY------ELYRTDIYK-ILEENRREGSVY-CSFCSR-MRRGALYSKALEG 128

Query: 137 GADVLATGHYI 147
           G + +A  H++
Sbjct: 129 GFNKIALAHHL 139


>gi|217077866|ref|YP_002335584.1| NAD synthase family [Thermosipho africanus TCF52B]
 gi|217037721|gb|ACJ76243.1| NAD synthase family [Thermosipho africanus TCF52B]
          Length = 342

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  VV+A SGG+DS+V A L K   G + +           A+   G     + +   ++
Sbjct: 23  NKNVVIAFSGGLDSTVAALLTKEALGPENV---------ELANVVYGPFTYKRSIEIVKK 73

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + I +       E  ++  +       +  G +   C  C +TVK + +    +    
Sbjct: 74  SAEKIGLKITF--LESLYQKEI-------WKNGPS---CNMCTKTVKMNTVKKYAKD--- 118

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
                                     R +    +QS     T  +    L  PLGD+ K 
Sbjct: 119 --------------------------RLVITGSNQSDSWGKTGLKVFNGLYAPLGDLNKS 152

Query: 199 SVRDLAREMGLDIADKSDS 217
            ++++       +    ++
Sbjct: 153 EIQNILDFYSFKLERIGEN 171


>gi|3273714|gb|AAC24818.1| argininosuccinate synthase [Corynebacterium glutamicum]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+V+A SGG+D++V    LK+  DG +VI V+L L    +           Q   DA   
Sbjct: 4   RIVLAYSGGLDTTVAIPYLKKMIDG-EVIAVSLDLGQGGENMDN-----VRQRALDA-GA 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            ++I     V D ++ F     +P   +        P V   +R +    L+   +Q   
Sbjct: 57  AESI-----VVDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAGKQFNG 111

Query: 139 DVLATGHYIRSRLYVG 154
             +A G   +    VG
Sbjct: 112 THVAHGCTGKGNDQVG 127


>gi|302036775|ref|YP_003797097.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Nitrospira
           defluvii]
 gi|190343190|gb|ACE75578.1| GMP synthetase [Candidatus Nitrospira defluvii]
 gi|300604839|emb|CBK41171.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Nitrospira
           defluvii]
          Length = 518

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 62/193 (32%), Gaps = 32/193 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDSSV AAL  R  G  +  V            R G     +     +   
Sbjct: 223 RVICALSGGVDSSVAAALTHRAVGDQLTCVF-----VDNGVLRTGERDQVE-----KTFA 272

Query: 81  DTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
             ++++  + D   +F      V  P       G         N  V+   L     +  
Sbjct: 273 SQMHLNMRILDRTSQFLTGLKNVTDPERKRKIIGR----LFIKNFEVESKKL--KGIKYL 326

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                    I S  + G     +                +     +    L  PL ++ K
Sbjct: 327 VQGTLYPDVIESVSFKGPSATIKTHHN------------VGGLPTRMKLKLVEPLRELFK 374

Query: 198 ESVRDLAREMGLD 210
           + VR L +E+GL 
Sbjct: 375 DEVRVLGQELGLP 387


>gi|312792427|ref|YP_004025350.1| exsb protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179567|gb|ADQ39737.1| exsB protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 38/209 (18%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDS+ +   +K  GY+V  ++  LY               +++  A++ C  ++V 
Sbjct: 3   LSGGVDSTTLLYDVKSQGYEVFAISF-LY----------GQKHSKELEFAKKTCKLLSVP 51

Query: 87  HYVFD---YEERFRNAVIVPFA---SSYAAGETPLPCVDCNRTVKFSDLL----SVTRQL 136
           H + D   + E   +A+  P       Y    T    V  NR +    LL    +    L
Sbjct: 52  HKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNM---VLLSISAAYAISL 108

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  L  G +        D  K        ++  ++  Y       +       P  DMK
Sbjct: 109 GAKKLFYGAHAGDHPIYPDCRKEF------VEAMKNALYLADYIGLELEA----PYVDMK 158

Query: 197 KESVRDLAREMG----LDIADKSDSQDIC 221
           KE +     E+G    L  +     Q  C
Sbjct: 159 KEDILRRGLELGVDYSLTWSCYKGGQKAC 187


>gi|289548051|ref|YP_003473039.1| NAD+ synthetase [Thermocrinis albus DSM 14484]
 gi|289181668|gb|ADC88912.1| NAD+ synthetase [Thermocrinis albus DSM 14484]
          Length = 565

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           +VVV +SGG+DSS+VA +     G + V+GV +
Sbjct: 311 KVVVGLSGGIDSSLVACMAVDALGEERVVGVFM 343


>gi|281411874|ref|YP_003345953.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
 gi|281372977|gb|ADA66539.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
          Length = 290

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 45/209 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS+VV +L  +  G D V G+   +   R +SK          V DA  +C+
Sbjct: 31  VVGVSGGIDSAVVLSLCVQALGKDRVFGL---ILPERDSSKDS--------VKDAVELCE 79

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-------------CNRTVKFSD 128
           ++NV          ++   I P            P +               N   K   
Sbjct: 80  SLNV---------EYKIKSITPILRKIGVYRLFPPKLFFPESVVKRYVLNKWNSLSK-DP 129

Query: 129 LLSVTRQLGADVLATG-------HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            L   R  G D    G       H IR  L   +  KR   +    +     +       
Sbjct: 130 FLDDLRNSGPDEFLKGLAYYRIKHRIRMCLLYFEAEKRGYAVVGTTNRTEYLTGLYVKWG 189

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + +     P+  + K  V +LARE+ + 
Sbjct: 190 DEAVD--IEPIMHLYKTQVFELARELNIP 216


>gi|85714484|ref|ZP_01045472.1| argininosuccinate synthase [Nitrobacter sp. Nb-311A]
 gi|85698931|gb|EAQ36800.1| argininosuccinate synthase [Nitrobacter sp. Nb-311A]
          Length = 409

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 28/138 (20%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  +VV+A SGG+D+S+   +LK          LQ     +          G+++  A
Sbjct: 2   SKKVKKVVLAYSGGLDTSI---ILK---------WLQTTYDAEVVTFTADLGQGEELEPA 49

Query: 77  RRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKF 126
           R+    + +     ++ D  E F    + P           Y  G +    +   + +  
Sbjct: 50  RKKAQLLGIKDANIFIEDLREEFVRDYVFPMFRANAVYEGQYLLGTSIARPLIAKKQI-- 107

Query: 127 SDLLSVTRQLGADVLATG 144
                +  ++GAD +A G
Sbjct: 108 ----EIAEKVGADAVAHG 121


>gi|113475545|ref|YP_721606.1| exsB protein [Trichodesmium erythraeum IMS101]
 gi|123056780|sp|Q114E1|QUEC_TRIEI RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|110166593|gb|ABG51133.1| exsB protein [Trichodesmium erythraeum IMS101]
          Length = 222

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 34/208 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS V    K DG +   +                    +++  A+++ 
Sbjct: 1   MKAVILLSGGLDSSTVLYQAKADGCECYAI-----------SFDYQQRHLRELDSAKKIA 49

Query: 81  DTIN-VSHYVFDYEERFR----------NAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
           DT+  + H++  ++ R            +           +   P+  V    T+  S  
Sbjct: 50  DTVGVIEHHIVSFDLRSWGGSALTDSQIDLPSDRDLEE-MSQNIPITYVPARNTIFLSFA 108

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L+    + A  +  G          D        CRP  +   Q  F   T Q +  +  
Sbjct: 109 LAYAEVVNASRVYIGVNALDYSGYPD--------CRPDYILAMQEVFRLGTRQGREGEAI 160

Query: 190 ---FPLGDMKKESVRDLAREMGLDIADK 214
               PL +MKK  +  L   +G+     
Sbjct: 161 AIVAPLIEMKKTEIIQLGNSLGVPWEKT 188


>gi|289522928|ref|ZP_06439782.1| ATPase, PP-loop superfamily [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503952|gb|EFD25116.1| ATPase, PP-loop superfamily [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 15/130 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           KD +++VA+SGG DS +    +L R GY+  G+ + L         +    +       R
Sbjct: 46  KDSKILVAVSGGKDS-LALWDILTRLGYNAHGLYINLGIEENDYSNESEELS-------R 97

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              + I    YV + +E    ++     S          C  C  T ++  +    R+  
Sbjct: 98  TFANRIGKKLYVVNVKEIHGMSIPDKAYSKKRK-----TCSVCGVTKRY-YMNKTAREGN 151

Query: 138 ADVLATGHYI 147
            DV+ TGH +
Sbjct: 152 FDVIVTGHNL 161


>gi|242309060|ref|ZP_04808215.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524484|gb|EEQ64350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 255

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 18/131 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +  ++++ +SGG DS ++A LL R   Y             +          G +    
Sbjct: 26  KEGDKILLGLSGGKDSILLATLLARLKKYAPF--------DFEFKALTVDYGRGGEYEYI 77

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              C+ + + +      E +R  +            T   C  C+R ++   L S   + 
Sbjct: 78  FEYCEKLGIPY------ELYRTDIYK-ILEENRREGTVY-CSFCSR-MRRGALYSKALEG 128

Query: 137 GADVLATGHYI 147
           G + +A  H++
Sbjct: 129 GFNKIALAHHL 139


>gi|16800150|ref|NP_470418.1| GMP synthase [Listeria innocua Clip11262]
 gi|24211759|sp|Q92CU0|GUAA_LISIN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|16413540|emb|CAC96312.1| guaA [Listeria innocua Clip11262]
          Length = 518

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|327387211|gb|AEA58684.1| hypothetical protein LCBD_p44 [Lactobacillus casei BD-II]
          Length = 276

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 40/197 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV VA SGG+DS++V  +      DV+G      ++  A          ++   A  + 
Sbjct: 19  QRVTVAFSGGIDSTLVLKMAL----DVLG-----RDNVTAVVANSELFMDEEFDKAMSLA 69

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +  +          +   +   +  +    TP       +   +S L  +    G+  
Sbjct: 70  EELGANV---------QGTTLDYLSDDHIKNNTPDSWYYAKKMF-YSRLNDIAANNGSAA 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G      +   D+   R  +    +                         D  K  V
Sbjct: 120 VLDG------MIKNDENDYRPGLKARSEAG---------------ARSLLQEADFFKTDV 158

Query: 201 RDLAREMGLDIADKSDS 217
           R LA+E+GL   +K  S
Sbjct: 159 RALAQELGLTNWNKVAS 175


>gi|226941091|ref|YP_002796165.1| argininosuccinate synthase [Laribacter hongkongensis HLHK9]
 gi|254807526|sp|C1D9Q4|ASSY_LARHH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226716018|gb|ACO75156.1| AssY [Laribacter hongkongensis HLHK9]
          Length = 408

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 64/202 (31%), Gaps = 66/202 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G++V  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADIGQGEEVEPARKKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LALGIKPENIFIDDLREEFVRDFVFPMFRANAVYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +   +GA+ ++ G                           DQ              +RF
Sbjct: 107 EIANMVGAEAVSHG---------------------ATGKGNDQ--------------VRF 131

Query: 191 PLGDM-KKESVRDLA--REMGL 209
            LG    K  V+ +A  RE  L
Sbjct: 132 ELGYYALKPEVKVIAPWREWDL 153


>gi|281419847|ref|ZP_06250846.1| ATPase of the pp-loop family protein [Prevotella copri DSM 18205]
 gi|281405974|gb|EFB36654.1| ATPase of the pp-loop family protein [Prevotella copri DSM 18205]
          Length = 253

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 45/199 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+++A+SGG DS  +  LL +         +V    + + N    + R            
Sbjct: 48  RILIALSGGKDSLELVRLLAQRARIYKPHIEVEAAHIIMDNIPYETDRS----------Y 97

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +  C    +  ++              F  S    +T       NR      L      
Sbjct: 98  LQDFCAENGIKLHILHSS----------FDESTDPRKTRCFLCAWNRR---KTLFEFAVS 144

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD----LRFP 191
            G + +A GH++   L           +   +  E   S    +     L      +  P
Sbjct: 145 HGFNKIALGHHMDDILVT---------LLMNITFEGSHSTMQPSLP---LKHYPLTIIRP 192

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + +  +R +A E+   
Sbjct: 193 LCLVHEADIRQVAEELHFT 211


>gi|148269429|ref|YP_001243889.1| NAD+ synthetase [Thermotoga petrophila RKU-1]
 gi|147734973|gb|ABQ46313.1| NH(3)-dependent NAD(+) synthetase [Thermotoga petrophila RKU-1]
          Length = 281

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 45/209 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS+VV +L  +  G D V G+   +   R +SK          V DA  +C+
Sbjct: 22  VVGVSGGIDSAVVLSLCVQALGKDRVFGL---ILPERDSSKDS--------VKDAVELCE 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-------------CNRTVKFSD 128
           ++NV          ++   I P            P +               N   K   
Sbjct: 71  SLNV---------EYKIKSITPILRKIGVYRLFPPKLFFPESVVKRYVLNKWNSLSK-DP 120

Query: 129 LLSVTRQLGADVLATG-------HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            L   R  G D    G       H IR  L   +  KR   +    +     +       
Sbjct: 121 FLDDLRNSGPDEFLKGLAYYRIKHRIRMCLLYFEAEKRGYAVVGTTNRTEYLTGLYVKWG 180

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + +     P+  + K  V +LARE+ + 
Sbjct: 181 DEAVD--IEPIMHLYKTQVFELARELNIP 207


>gi|320095663|ref|ZP_08027319.1| GMP synthase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977384|gb|EFW09071.1| GMP synthase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 526

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 41/200 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV AAL+ +  G  +    +   +       +     G           
Sbjct: 224 VICALSGGVDSSVAAALVHKAVGDQLTCFFI---DHGLLRAGEREQVEGDY-------AR 273

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            + +     D  +RF +A          AG T  P  +  R +   +        ++   
Sbjct: 274 GMGIRVITCDESQRFLDA---------LAGVT-EP--ETKRKIIGREFIRSFEAAQKQVV 321

Query: 139 DVL-ATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + + A+G  ++  +        V   G       +           +    +    +L  
Sbjct: 322 EQVGASGGEVKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDMAFELVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR + RE+GL 
Sbjct: 375 PLRTLFKDEVRAVGRELGLP 394


>gi|313673407|ref|YP_004051518.1| tRNA(ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940163|gb|ADR19355.1| tRNA(Ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 420

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKA----SKRKG 65
           +D+DK  K+ +VVVA SGG DS    ALL         + L  + YN        +    
Sbjct: 18  IDIDK-LKNSKVVVAFSGGRDS---VALLH-------YLYLISKNYNIDLFACHVNHGIR 66

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                +D    +  C   ++  ++   ++    + +  F  S              R ++
Sbjct: 67  GEMGERDENFCKSFCGKFDIPLFI---KKIDVPSYVRRFNLSVEDAA---------RKLR 114

Query: 126 FSDLLSVTRQLGADVLATGHY 146
           +  L  V ++L AD +AT H+
Sbjct: 115 YQALFEVLQKLDADYIATAHH 135


>gi|291541683|emb|CBL14793.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus bromii L2-63]
          Length = 382

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 32/134 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-----RKGSCCAGQDVY 74
           + ++ V +SGG DS ++A L +          L+ +N             G     +DV 
Sbjct: 138 NDKIAVCISGGKDSMLMAKLFQE---------LKRHNKFPFELVFLVMDPGYSVENRDVI 188

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           ++      +N+   V      F   +         Y       PC  C   ++   L   
Sbjct: 189 ESN--ARRLNIPITV------FETDIFNSVYNVDKY-------PCYLC-ARMRRGYLYKK 232

Query: 133 TRQLGADVLATGHY 146
            +QLG + +A GH+
Sbjct: 233 AKQLGCNKIALGHH 246


>gi|262306095|gb|ACY45640.1| gln amidotransferase [Polyxenus fasciculatus]
          Length = 196

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 23/102 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI V +     RK                 + V
Sbjct: 45  KVLMLVSGGVDSAVCAALLHKALSEDQVIAVHIDNGFMRKDES--------------KDV 90

Query: 80  CDTI---NVSHYVFDYEERFRNA----VIVPFASSYAAGETP 114
           C ++    +     +   +F +A    V  P   +Y     P
Sbjct: 91  CVSLQKNGLKVKAVNARHQFTSAQTTIVANPAHPTYRTVTDP 132


>gi|222445889|ref|ZP_03608404.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435454|gb|EEE42619.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii
           DSM 2375]
          Length = 305

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  +V+VA+SGG DS     +L    K          + + +    +  +G     Q+  
Sbjct: 47  KGDKVLVALSGGKDSVTTLEILNSFRK----------MNVIDICAVTVDEGIDNYRQEGV 96

Query: 75  D-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLS 131
           D A R    + + H V   +E +   +          G     C  C   R    +    
Sbjct: 97  DIAIRHAKRLGIEHKVVSLKEEYGITLDEIMQKDNHIGS----CSYCGVFRRTIIN---K 149

Query: 132 VTRQLGADVLATGHYI 147
             R++GA  +ATGH +
Sbjct: 150 AAREMGATKIATGHNL 165


>gi|171058746|ref|YP_001791095.1| GMP synthase large subunit [Leptothrix cholodnii SP-6]
 gi|170776191|gb|ACB34330.1| GMP synthase, large subunit [Leptothrix cholodnii SP-6]
          Length = 532

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 60/194 (30%), Gaps = 31/194 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDA 76
           V++ +SGGVDSSV AAL+ R  G  +  V      L+L N         +      V   
Sbjct: 226 VILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRL-NEGAMVMEMFAGRLHAKVVHV 284

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 +                V  P       G   +           +  L      
Sbjct: 285 EAAEQFLG-----------HLKGVTDPEQKRKIIGREFVEVFQA-----EAAKLKGDGNK 328

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  LA G      +  G    ++  +    +        +    +     L  PL ++ 
Sbjct: 329 GAKWLAQGTIYPDVVESGGTASKKATIKSHHN--------VGGLPETLGLKLLEPLRELF 380

Query: 197 KESVRDLAREMGLD 210
           K+ VR+L   +GL 
Sbjct: 381 KDEVRELGVALGLP 394


>gi|325919316|ref|ZP_08181354.1| ExsB protein [Xanthomonas gardneri ATCC 19865]
 gi|325550214|gb|EGD21030.1| ExsB protein [Xanthomonas gardneri ATCC 19865]
          Length = 74

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V AL +  G+ V  +          S R G      ++  A RV 
Sbjct: 2  KKAVVLLSGGMDSAAVVALAQEQGFAVHAL----------SVRYGQ-RHTSELDAAARVA 50

Query: 81 DTIN-VSHYVFD 91
               ++H V D
Sbjct: 51 TAQGVIAHKVVD 62


>gi|303388765|ref|XP_003072616.1| Adenine nucleotide alpha hydrolase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301757|gb|ADM11256.1| Adenine nucleotide alpha hydrolase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 316

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 22/137 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  ++ + +SGG DS+V+A +L    KR  Y   G+ L L +  +              
Sbjct: 46  KEGDKIGIGVSGGKDSTVLAYVLDLLNKRHKY---GIELILLSVDEGIAGYRDHSIET-- 100

Query: 74  YDARRVC---DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                VC    +  +   +  +EE F    +     ++  G+    C  C    +   L 
Sbjct: 101 -----VCKNSKSFGLKLRIVSFEEIFG---VTMDGIAHKTGKRGN-CTYCGVFRR-QALE 150

Query: 131 SVTRQLGADVLATGHYI 147
              R++G D++ATGH  
Sbjct: 151 EAAREMGVDMIATGHNA 167


>gi|311744725|ref|ZP_07718522.1| GMP synthase [Aeromicrobium marinum DSM 15272]
 gi|311312034|gb|EFQ81954.1| GMP synthase [Aeromicrobium marinum DSM 15272]
          Length = 531

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 24/193 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV+ A+SGGVDS+V  AL++R  G  +  V     +     + +              
Sbjct: 229 DSRVISALSGGVDSAVSTALVQRAIGDRLTAVF---VDHGLLREGEAEQVELDY------ 279

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V   V D  E+F           + AG T     +  R +   + + V     A
Sbjct: 280 VAAT-GVDLKVVDAREQFL---------GHLAGVT---DPETKRKIIGREFIRVFEAAEA 326

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
           +VLAT       L  G                  +S + +    +     L  PL  + K
Sbjct: 327 EVLATPGPPVKFLVQGTLYPDVVESGGGEGAATIKSHHNVGGLPEDLEFSLIEPLRALFK 386

Query: 198 ESVRDLAREMGLD 210
           + VR++ R++G+ 
Sbjct: 387 DEVREVGRQLGIP 399


>gi|262306085|gb|ACY45635.1| gln amidotransferase [Orchesella imitari]
          Length = 196

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRD 43
          K  +V++ +SGGVDS+V AALLK+ 
Sbjct: 42 KHHKVLMLLSGGVDSTVCAALLKKA 66


>gi|145295535|ref|YP_001138356.1| argininosuccinate synthase [Corynebacterium glutamicum R]
 gi|187470629|sp|A4QDZ4|ASSY_CORGB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|140845455|dbj|BAF54454.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 401

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+V+A SGG+D++V    LK+  DG +VI V+L L    +           Q   DA   
Sbjct: 4   RIVLAYSGGLDTTVAIPYLKKMIDG-EVIAVSLDLGQGGENLDN-----VRQRALDA-GA 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            ++I     V D ++ F     +P   +        P V   +R +    L+   +Q   
Sbjct: 57  AESI-----VVDAKDEFAEEYCLPTIKANGMYMKQYPLVSAISRPLIVKHLVEAGKQFNG 111

Query: 139 DVLATG 144
             +A G
Sbjct: 112 THVAHG 117


>gi|15679734|ref|NP_276852.1| hypothetical protein MTH1742 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622874|gb|AAB86212.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 270

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 21/134 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAA----LLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  RV+V +SGG DS V+       L+     ++  VT+                    V
Sbjct: 12  RGDRVLVGLSGGKDS-VMVIDILDELRERNIIELEAVTI---------DEGIGGYREDGV 61

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             AR++C    + H V                       +   C  C    ++  L    
Sbjct: 62  RIARKICADRGIPHRVVSL-----EDYAGITLDEIMKNPSRSACTYCGVFRRW-ILNREA 115

Query: 134 RQLGADVLATGHYI 147
           R+  A  +ATGH +
Sbjct: 116 RKSKATKIATGHNL 129


>gi|307354722|ref|YP_003895773.1| phosphoadenosine phosphosulfate reductase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157955|gb|ADN37335.1| phosphoadenosine phosphosulfate reductase [Methanoplanus
           petrolearius DSM 11571]
          Length = 295

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-QLYNSRKA------SKRKGSCCAGQ 71
           +  R+ VAMSGG DSS   ALL           L + +  R+       S  +G C   +
Sbjct: 46  QGDRIAVAMSGGKDSS---ALLH---------FLAKTFGERRDITIFAISIDEGICGY-R 92

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASS-YAAGETPLPCVDCNRTVKFSDLL 130
           D+    ++ +   VS +   +++ +             A     + C  C   ++   L 
Sbjct: 93  DMKPVEKIAERYGVSFHSVSFKDAY-----GFTLDEIVAKQGDRISCSRCG-VLRRHLLN 146

Query: 131 SVTRQLGADVLATG 144
              R+LGA  +A G
Sbjct: 147 KTARELGATKIALG 160


>gi|242398344|ref|YP_002993768.1| ThiI thiamin biosynthesis protein thiI [Thermococcus sibiricus MM
           739]
 gi|242264737|gb|ACS89419.1| ThiI thiamin biosynthesis protein thiI [Thermococcus sibiricus MM
           739]
          Length = 208

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 80/250 (32%), Gaps = 62/250 (24%)

Query: 12  LDLDKNPKDMRV--VVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCC 68
           +D   NP   RV  V  +S G+DS V   L+ + G+ V  +  +Q               
Sbjct: 1   MDNIPNPGGGRVKAVALLSSGIDSPVAIYLMLKKGFTVYPIHFMQ--------------- 45

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEE-------RFRNAVIVPFASSYAAGETPLPCVDCN 121
           +  +    RR+   +    Y    EE        ++  +           +    C+ C 
Sbjct: 46  SEVNHQKVRRIWMRLK-ELYPDSLEELIAVDAFEYQKPIFDKLIE---LKKEKWICIFC- 100

Query: 122 RTVKFSDLL---SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
              KFS L+    + ++  A V+ TG  +        D      +    DL         
Sbjct: 101 ---KFSMLMKAAEIAKEKNAMVIITGDSLGQVASQTLDNLLIISL--ATDLP-------- 147

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC-FVQ-----QGKYFDVV 232
                    +  PL  M K  +  +A+E+G       + ++ C FV      +G   +  
Sbjct: 148 ---------VLRPLIGMDKVEIEKIAKEIG-TFEISIEPEESCNFVPRHPIIRGALGEFK 197

Query: 233 KRINAGIALE 242
           K        E
Sbjct: 198 KIYREVFGKE 207


>gi|294875418|ref|XP_002767312.1| GMP synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239868875|gb|EER00030.1| GMP synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 559

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 59/214 (27%), Gaps = 66/214 (30%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V+ A+SGGVDSSV AAL+    Y  +G                         +A  V
Sbjct: 257 DKHVIAAVSGGVDSSVAAALV----YRALG---------DKFHPFMVDTGLLRKNEAAEV 303

Query: 80  CDTI-----NVSHYVFDYEERFR---NAVIVP----------FASSYAAG-----ETPLP 116
            + +      ++  V D  E F      V  P          F  S+          P  
Sbjct: 304 KERLDSHLPGLNLQVLDASEDFMTKLKDVKEPEKKRKIIGGLFIDSFEKAIHNMNLEPEN 363

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           CV                            I S  Y G     +                
Sbjct: 364 CVL------------------LQGTLYPDVIESTSYKGPSTTIKTHHN------------ 393

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     +    +  PL  + K+ VR L  E+GL 
Sbjct: 394 VGGLPARMKMQILEPLRLLFKDEVRKLGLELGLH 427


>gi|238061016|ref|ZP_04605725.1| bifunctional GMP synthase/glutamine amidotransferase
           [Micromonospora sp. ATCC 39149]
 gi|237882827|gb|EEP71655.1| bifunctional GMP synthase/glutamine amidotransferase
           [Micromonospora sp. ATCC 39149]
          Length = 524

 Score = 48.6 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 63/200 (31%), Gaps = 40/200 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDS+V AAL+ R  G  +  V     +       +              
Sbjct: 224 DKEVICGLSGGVDSAVAAALVHRAVGDQLTCVF---VDHGLLRAGEAEQVEKDY------ 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
           V  T  +   V D  +RF  A          AG T     +  R +          +  R
Sbjct: 275 VAAT-GIKLKVVDAADRFLGA---------LAGVT---DPEQKRKIIGREFIRVFEAAAR 321

Query: 135 QLGAD----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           ++ A      L  G      +  G  G       +           +    +     L  
Sbjct: 322 EVAAHGDVEFLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPEDLKFALVE 372

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR L  E+GL 
Sbjct: 373 PLRTLFKDEVRTLGLELGLP 392


>gi|225011775|ref|ZP_03702213.1| Argininosuccinate synthase [Flavobacteria bacterium MS024-2A]
 gi|225004278|gb|EEG42250.1| Argininosuccinate synthase [Flavobacteria bacterium MS024-2A]
          Length = 396

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  ++V+A SGG+D+S     L ++GY+V  V                  +  ++ D   
Sbjct: 2   KHSKLVLAYSGGLDTSYSLRKLSKEGYEVHAV-----------SINTGGFSENEIKDIEE 50

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQL 136
               +    Y   +  + F + ++              P       +  +  +++  + +
Sbjct: 51  KSYQMGAHVYKNINALDTFYHKIVKYLIFGNVLRNNTYPLSVSAERIIQAIEIVTYAKAI 110

Query: 137 GADVLATG 144
           GA  +A G
Sbjct: 111 GAKYIAHG 118


>gi|255934774|ref|XP_002558414.1| Pc12g16160 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583033|emb|CAP81243.1| Pc12g16160 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 535

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC-D 81
           V+ A+SGGVDS+V A+L+       IG      +   A      C    +    + V   
Sbjct: 232 VLGAVSGGVDSTVAASLMTEA----IG------DRFHAVLVDNGCMRLNECEVVKEVLQK 281

Query: 82  TINVSHYVFDYEERF 96
            + ++  V D  E F
Sbjct: 282 QLGINLTVVDASEEF 296


>gi|222823247|ref|YP_002574820.1| ATPase (PP-loop superfamily) [Campylobacter lari RM2100]
 gi|222538468|gb|ACM63569.1| conserved hypothetical protein, putative ATPase (PP-loop
           superfamily) [Campylobacter lari RM2100]
          Length = 253

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGG DS  +A LLKR   +      L+            S   G+D      
Sbjct: 25  NDKVLLGLSGGKDSLALAHLLKRMQAHAPFKFQLK--------AVTLSYGMGEDYTKLHN 76

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    ++H V D      + +      +     +   C   +R ++   L +   + G 
Sbjct: 77  HCKEHGINHEVID------SNIYEISGDTIRKNSSF--CSYFSR-MRRGALYTYALENGF 127

Query: 139 DVLATGHYI 147
           + LA  H++
Sbjct: 128 NKLAIAHHL 136


>gi|307570623|emb|CAR83802.1| GMP synthase [Listeria monocytogenes L99]
 gi|313609403|gb|EFR85008.1| GMP synthase (glutamine-hydrolyzing) [Listeria monocytogenes FSL
           F2-208]
          Length = 518

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|297799514|ref|XP_002867641.1| arginosuccinate synthase family [Arabidopsis lyrata subsp. lyrata]
 gi|297313477|gb|EFH43900.1| arginosuccinate synthase family [Arabidopsis lyrata subsp. lyrata]
          Length = 495

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 27/132 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +VV+A SGG+D+SV+   LK + G +V+  T        A   +G          A+   
Sbjct: 99  KVVLAYSGGLDTSVIVPWLKENYGCEVVCFT--------ADVGQGIKELEGLEQKAKASG 150

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
              +     V D  E F    I P           Y  G +        R V    ++ V
Sbjct: 151 ASQL----VVKDLTEEFVKDYIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDV 200

Query: 133 TRQLGADVLATG 144
             ++GAD +A G
Sbjct: 201 AAEVGADAVAHG 212


>gi|226223707|ref|YP_002757814.1| GMP synthetase [Listeria monocytogenes Clip81459]
 gi|225876169|emb|CAS04875.1| Putative GMP synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 518

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|254933199|ref|ZP_05266558.1| guaA [Listeria monocytogenes HPB2262]
 gi|293584758|gb|EFF96790.1| guaA [Listeria monocytogenes HPB2262]
          Length = 514

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|124486297|ref|YP_001030913.1| hypothetical protein Mlab_1481 [Methanocorpusculum labreanum Z]
 gi|124363838|gb|ABN07646.1| ExsB family protein [Methanocorpusculum labreanum Z]
          Length = 199

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 67/214 (31%), Gaps = 48/214 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+V V  SGG DSS+ A LL RD YDV  +T  +++                V       
Sbjct: 1   MKVGVLYSGGKDSSLAAVLLSRD-YDVELLTF-VFDE------------THAVPSIEAAA 46

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                      +   F + V+              P    N  +    L +  ++   +V
Sbjct: 47  KETGFPWKKLVFAPGFLDEVVDNIV------RDGHPANAIN-EIHRRSLCAAAQEY--EV 97

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY-FLFATTQQQLCDLRFPLGDMKKES 199
           +A G     R+ +    +              QS    +  +         PL  + K  
Sbjct: 98  VADGTRRDDRVPMRTQSEV-------------QSLEMKYGVSY------IRPLLGIGKTE 138

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
           +  LA +   +IA          +  G + + ++
Sbjct: 139 IIRLAEKF-FEIAYGETGT----IPNGDFENEIR 167


>gi|57641627|ref|YP_184105.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159951|dbj|BAD85881.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
           KOD1]
          Length = 246

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           RL+  D D++P   +V VA SGG DS+    +L+  G+D I +T++L    + +  K   
Sbjct: 44  RLSGKDFDRSPTGAKVAVAFSGGSDSTATLKVLRWAGFDAIPITVKLPQMGEKTLEKARN 103

Query: 68  CAGQDVY 74
                + 
Sbjct: 104 YGAVFIE 110


>gi|312866569|ref|ZP_07726784.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parasanguinis F0405]
 gi|311097868|gb|EFQ56097.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parasanguinis F0405]
          Length = 521

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKA 60
            +     +    + +   D RV++ +SGGVDSSVV  LL++  G  +I +          
Sbjct: 208 TMDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIF-----VDHG 262

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             RKG      ++     +     ++    D  +RF + +                 V  
Sbjct: 263 LLRKGEADQVMEM-----LGGKFGLNIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYV 317

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                F D    ++      LA G      +  G D  +     +           +   
Sbjct: 318 -----FDD--EASKLKDVKFLAQGTLYTDVIESGTDTAQT---IKSHHN-------VGGL 360

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +    +L  PL  + K+ VR L  E+G+ 
Sbjct: 361 PEDMQFELIEPLNTLYKDEVRALGTELGMP 390


>gi|310826721|ref|YP_003959078.1| GMP synthase [Eubacterium limosum KIST612]
 gi|308738455|gb|ADO36115.1| GMP synthase [Eubacterium limosum KIST612]
          Length = 512

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 34/195 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V+ A+SGGVDSSV + L+ R     IG  +T    +     K +G            
Sbjct: 217 DKKVLCALSGGVDSSVASTLVHRA----IGDQLTCIFVDHGLLRKDEGDQVEEIFK---- 268

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +   ++    + E+RF             AG       +  R +   + + V  +  
Sbjct: 269 ---NRFKMNFIRVNCEDRFLGK---------LAGID---DPERKRKIIGEEFIRVFEEES 313

Query: 138 ADVLATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           + +    + ++  +Y    + G +   + +           +    +    +L  PL ++
Sbjct: 314 SKLKNIDYLLQGTIYPDVIESGTKNAAVIKSHHN-------VGGLPEDVDFELIEPLRNL 366

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L  E+GLD
Sbjct: 367 FKDEVRELGEELGLD 381


>gi|290981496|ref|XP_002673466.1| glutamine amidotransferase [Naegleria gruberi]
 gi|284087050|gb|EFC40722.1| glutamine amidotransferase [Naegleria gruberi]
          Length = 558

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/22 (63%), Positives = 18/22 (81%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD 43
            VV+A+SGGVDSSV A LL++ 
Sbjct: 267 HVVMALSGGVDSSVAAVLLQKA 288


>gi|218780476|ref|YP_002431794.1| NAD+ synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218761860|gb|ACL04326.1| NAD+ synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 548

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VVV +SGG+DS++  A+     G +    + +                + Q+  D + +
Sbjct: 290 KVVVGLSGGIDSALTLAVAAEALGPENTYSIFM-----------PSEYTSQQNHTDTKEL 338

Query: 80  CDTINVSHYVFDYEERFR 97
            D +   + +      F 
Sbjct: 339 ADNLGCPYEIIPITPIFE 356


>gi|217964817|ref|YP_002350495.1| GMP synthase (glutamine-hydrolyzing) (Glutamineamidotransferase)
           (GMP synthetase) [Listeria monocytogenes HCC23]
 gi|290894354|ref|ZP_06557319.1| GMP synthase [Listeria monocytogenes FSL J2-071]
 gi|217334087|gb|ACK39881.1| GMP synthase (glutamine-hydrolyzing) (Glutamineamidotransferase)
           (GMP synthetase) [Listeria monocytogenes HCC23]
 gi|290556109|gb|EFD89658.1| GMP synthase [Listeria monocytogenes FSL J2-071]
          Length = 514

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|168206318|ref|ZP_02632323.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens E str. JGS1987]
 gi|170662185|gb|EDT14868.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens E str. JGS1987]
          Length = 385

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         +  +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELAERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLMVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYETSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|116872487|ref|YP_849268.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123463685|sp|A0AHK7|GUAA_LISW6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116741365|emb|CAK20489.1| GMP synthetase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 518

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|34558468|ref|NP_908283.1| putative asparagine synthetase (glutamine-HYDROLYZ [Wolinella
           succinogenes DSM 1740]
 gi|34484187|emb|CAE11183.1| PUTATIVE ASPARAGINE SYNTHETASE (GLUTAMINE-HYDROLYZ [Wolinella
           succinogenes]
          Length = 606

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 29/207 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D+RV   +SGG+DSS VAAL  +  YD             A   K S     +   A  
Sbjct: 264 SDVRVGACLSGGLDSSGVAALASQQ-YD-------FGEKLVAIHAKSSLKESDESSYAIE 315

Query: 79  VCDTINVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V + + +  ++ +   E F  ++   F           P    +  +++  ++   ++LG
Sbjct: 316 VANHLGLDLHMVEPSFEDFCESLDDLF------YTQEEPFGSTSMFMQY-FVMKKAKELG 368

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
             V+  G            G          DL RD+ +FL     + L   R       K
Sbjct: 369 CKVMLDGQGADEVFL----GYEHYFHNIFKDL-RDRKFFLENDFFKDLKTFR-----YTK 418

Query: 198 ESVRDL---AREMGLDIADKSDSQDIC 221
           E + +    A + G+      +  +IC
Sbjct: 419 EQILEELKKADDAGVAWDVIKNRGNIC 445


>gi|46907321|ref|YP_013710.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes str. 4b F2365]
 gi|47091892|ref|ZP_00229686.1| GMP synthase [Listeria monocytogenes str. 4b H7858]
 gi|254823634|ref|ZP_05228635.1| GMP synthase [Listeria monocytogenes FSL J1-194]
 gi|254853020|ref|ZP_05242368.1| GMP synthase [Listeria monocytogenes FSL R2-503]
 gi|300764251|ref|ZP_07074245.1| GMP synthase [Listeria monocytogenes FSL N1-017]
 gi|50400343|sp|Q720X7|GUAA_LISMF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46880588|gb|AAT03887.1| GMP synthase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47019608|gb|EAL10347.1| GMP synthase [Listeria monocytogenes str. 4b H7858]
 gi|258606368|gb|EEW18976.1| GMP synthase [Listeria monocytogenes FSL R2-503]
 gi|293592857|gb|EFG00618.1| GMP synthase [Listeria monocytogenes FSL J1-194]
 gi|300514903|gb|EFK41956.1| GMP synthase [Listeria monocytogenes FSL N1-017]
 gi|328466753|gb|EGF37874.1| GMP synthase [Listeria monocytogenes 1816]
          Length = 514

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|206602942|gb|EDZ39422.1| probable ATPase, PP-loop superfamily [Leptospirillum sp. Group II
           '5-way CG']
          Length = 307

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 17/136 (12%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + +   K  R++VA+SGG DS +    +L R GY   G  L L              +G+
Sbjct: 40  EFEMFTKSDRILVAVSGGKDS-LALWDILNRLGYQTTGFHLDL---------GIGGYSGE 89

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            V   R       +S +V    +      +    ++ A      PC  C  + K      
Sbjct: 90  SVEKTRAFALRHGLSLHVESLVQE-----VGASVANIADLTNRPPCSACGVS-KRHLFNR 143

Query: 132 VTRQLGADVLATGHYI 147
             ++L   V+ATGH +
Sbjct: 144 AAKKLECQVVATGHNL 159


>gi|156937300|ref|YP_001435096.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566284|gb|ABU81689.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 304

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-----ASKRKGSCCAGQDVY 74
           + ++++A+SGG DS V   L+     DV+    QL + +        +        ++  
Sbjct: 41  NSKILLAVSGGKDSLV---LM-----DVVA---QLRDPKDLVAATVVEGAPGGYRVKEAQ 89

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A+R  + + + H    ++E F  +          A     PC  C    +   L  + R
Sbjct: 90  VAKRFAEKLGIKHITITFKELFGKS-----LEEMVAKGKLSPCTYCGVFRR-RALEVLAR 143

Query: 135 QLGADVLATGHYI 147
           +LGA V+ATGH +
Sbjct: 144 RLGA-VVATGHTL 155


>gi|170781642|ref|YP_001709974.1| argininosuccinate synthase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189046385|sp|B0RHD5|ASSY_CLAMS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|169156210|emb|CAQ01352.1| putative argininosuccinate synthase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 417

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    LK   G +V+ +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVGIGWLKDATGKEVVAL------------AVDVGQGGEDMEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F +  IVP   + A  +   P V   +R +    L  V  +LGA
Sbjct: 52  LDCGAVEAVVVDAKDEFADDYIVPALKANALYQKRYPLVSGLSRPLIAKHLARVAHELGA 111

Query: 139 DVLATG 144
           + +A G
Sbjct: 112 NSVAHG 117


>gi|85714648|ref|ZP_01045635.1| LPS biosynthesis protein WbpG [Nitrobacter sp. Nb-311A]
 gi|85698533|gb|EAQ36403.1| LPS biosynthesis protein WbpG [Nitrobacter sp. Nb-311A]
          Length = 381

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS VA L K           +L              + Q V +  ++ D +
Sbjct: 74  IIGVSGGVDSSYVAYLAKE----------RLGLRPLIFHVDAGWNSQQSVNNIEKMVDGL 123

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  +  V D++E  ++  +  F +     +TP           F+ L +     G   +
Sbjct: 124 GLDLHTEVIDWQEM-KDLQLAFFKAQVPHLDTPQ------DHAFFAALYNFAATHGFKYV 176

Query: 142 ATG 144
            TG
Sbjct: 177 ITG 179


>gi|312876999|ref|ZP_07736973.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796230|gb|EFR12585.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 38/209 (18%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDS+ +   +K  GY+V  ++  LY               +++  A++ C  ++V 
Sbjct: 3   LSGGVDSTTLLYDVKSQGYEVFAISF-LY----------GQKHSKELEFAKKTCKLLSVP 51

Query: 87  HYVFD---YEERFRNAVIVPFA---SSYAAGETPLPCVDCNRTVKFSDLL----SVTRQL 136
           H + D   + E   +A+  P       Y    T    V  NR +    LL    +    L
Sbjct: 52  HKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNM---VLLSISAAYAISL 108

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  L  G +        D  K        ++  ++  Y       +       P  DMK
Sbjct: 109 GAKKLFYGAHAGDHPIYPDCRKEF------VEAMKNALYLADYIGLELEA----PYVDMK 158

Query: 197 KESVRDLAREMG----LDIADKSDSQDIC 221
           KE +     E+G    L  +     Q  C
Sbjct: 159 KEDILRRGLELGVDYSLTWSCYKGGQKAC 187


>gi|269124156|ref|YP_003306733.1| GMP synthase, large subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268315482|gb|ACZ01856.1| GMP synthase, large subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 512

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 49/205 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++ +SGGVDSSV A L+ +  G ++I V                        +A R
Sbjct: 212 DKKVMLGLSGGVDSSVAAVLINKAIGDNLICVF--------------VDTGLLRYDEANR 257

Query: 79  VCDTINVSHYVFDYEERFRNAVI-----VPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
           V D          Y+  F   ++       F S     + P       R +   + +   
Sbjct: 258 VYDY---------YKSNFNLNIVKVDAGDRFLSKLKGVDEPE----AKRKIIGKEFVEVF 304

Query: 131 --SVTRQLG---ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                +  G    + LA G      +           +    +        +    ++  
Sbjct: 305 NEEAAKLKGGKDVEFLAQGTIYPDVIESQAVEGVSHTIKSHHN--------VGGLPEEMT 356

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR + +EMG+ 
Sbjct: 357 FKLLEPLRELFKDEVRQVGKEMGMP 381


>gi|220935618|ref|YP_002514517.1| Argininosuccinate synthase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996928|gb|ACL73530.1| Argininosuccinate synthase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 404

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR  
Sbjct: 6   KKVVLAYSGGLDTSVILKWLEDTYGCEVVTFT-------------ADIGQGEELEPARTK 52

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
              + V   Y+ D  E F    + P           Y  G +    +   R      L+ 
Sbjct: 53  AQAMGVKEIYIDDLREEFVRDFVFPMFRANTLYEGEYLLGTSIARPLIAKR------LIE 106

Query: 132 VTRQLGADVLATG 144
           +  + GAD ++ G
Sbjct: 107 IANETGADAISHG 119


>gi|300087768|ref|YP_003758290.1| GMP synthase large subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527501|gb|ADJ25969.1| GMP synthase, large subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 566

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 29/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSS+VA L+ R  G  +  + +     R+    +                
Sbjct: 270 KVIAALSGGVDSSIVATLIHRAIGDQLTCIFVNNGLLRREEAERTLKVFR---------- 319

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLG-A 138
             + ++    +  +RF +           AG T           +F S      ++LG  
Sbjct: 320 QNLGMNIVYVEATDRFLDK---------LAGITDPEQKRKAIGAEFISVFEDEAKKLGQV 370

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G      +             +           +    +     L  P+  + K+
Sbjct: 371 DFLAQGTLYPDVIESVASVGTASAKIKSHHN-------VGGLPENMALKLLEPVRYLFKD 423

Query: 199 SVRDLAREMGLD 210
            VR +  E+GL 
Sbjct: 424 EVRQVGLELGLP 435


>gi|186685615|ref|YP_001868811.1| argininosuccinate synthase [Nostoc punctiforme PCC 73102]
 gi|229889883|sp|B2J6U2|ASSY_NOSP7 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|186468067|gb|ACC83868.1| argininosuccinate synthase [Nostoc punctiforme PCC 73102]
          Length = 400

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 27/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELEPIRE 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT---------VKFSDL 129
                          E     V   F   YA G      +  NR          +    L
Sbjct: 52  KALKSG-------ASESLVADVKDSFVKDYAFGAIQANALYENRYPLGTALARPLIAKIL 104

Query: 130 LSVTRQLGADVLATG 144
           +    + GAD +A G
Sbjct: 105 VETAEKYGADAIAHG 119


>gi|224500529|ref|ZP_03668878.1| GMP synthase [Listeria monocytogenes Finland 1988]
          Length = 514

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|254828475|ref|ZP_05233162.1| bifunctional GMP synthase/glutamine amidotransferase [Listeria
           monocytogenes FSL N3-165]
 gi|258600870|gb|EEW14195.1| bifunctional GMP synthase/glutamine amidotransferase [Listeria
           monocytogenes FSL N3-165]
          Length = 514

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|154149122|ref|YP_001406622.1| argininosuccinate synthase [Campylobacter hominis ATCC BAA-381]
 gi|166219957|sp|A7I281|ASSY_CAMHC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|153805131|gb|ABS52138.1| argininosuccinate synthase [Campylobacter hominis ATCC BAA-381]
          Length = 406

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 30/141 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + KN K  +VV+A SGG+D+SV+   L  D Y    VT                   +D+
Sbjct: 1   MKKNVK--KVVLAYSGGLDTSVILKWL-EDNYKCEVVTF-----------TADIGQNEDL 46

Query: 74  YDARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRT 123
              +     + +     ++ D  E F    + P           Y  G          R 
Sbjct: 47  KPIKEKALKLGIKKENIFIKDLREEFVRDYVFPMFRANAVYEGEYLLG------TSIARP 100

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +    L+ + ++  AD +A G
Sbjct: 101 LISKYLVEIAKKTNADAIAHG 121


>gi|148273177|ref|YP_001222738.1| argininosuccinate synthase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166219962|sp|A5CSJ0|ASSY_CLAM3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|147831107|emb|CAN02056.1| putative argininosuccinate synthase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 412

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    LK   G +V+ +                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVGIGWLKDATGKEVVAL------------AVDVGQGGEDMEVIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D ++ F +  IVP   + A  +   P V   +R +    L  V  +LGA
Sbjct: 52  LDCGAVEAVVVDAKDEFADDYIVPALKANALYQKRYPLVSGLSRPLIAKHLARVAHELGA 111

Query: 139 DVLATG 144
           + +A G
Sbjct: 112 NSVAHG 117


>gi|303246570|ref|ZP_07332848.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491910|gb|EFL51788.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ]
          Length = 302

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGG DS  +  +L   G+DV G+ + L            C   +        C 
Sbjct: 49  KVLVAVSGGKDSLALLRVLSDLGHDVAGLHVHL---GIPDSSDPVCERTEAY------CR 99

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
               + +V    +      +               C  C + +K         + G   L
Sbjct: 100 ENGFALHVLRMAD------VGLAIPEVKDAVRRPICSVCGK-IKRHYFNRFAYENGYAAL 152

Query: 142 ATGHYI 147
           ATGH +
Sbjct: 153 ATGHNL 158


>gi|256380515|ref|YP_003104175.1| GMP synthase [Actinosynnema mirum DSM 43827]
 gi|255924818|gb|ACU40329.1| GMP synthase, large subunit [Actinosynnema mirum DSM 43827]
          Length = 519

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 64/192 (33%), Gaps = 24/192 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V            R G     +     R 
Sbjct: 219 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF-----VDHGLLRAGERTQVE-----RD 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
              +  V+    D  +RF +A          AG T     +  R +   + + V  Q   
Sbjct: 269 FVASTGVNLVTVDARQRFLDA---------LAGVT---DPEEKRKIIGREFIRVFEQAER 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D+ A G Y                        +            Q   L  PL  + K+
Sbjct: 317 DLKAEGDYGFLVQGTLYPDVVESGGGAGAANIKSHHNVGGLPDDLQFE-LVEPLRALFKD 375

Query: 199 SVRDLAREMGLD 210
            VR +  E+GL 
Sbjct: 376 EVRKVGAELGLP 387


>gi|222528237|ref|YP_002572119.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455084|gb|ACM59346.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 301

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +++V +SGG DS +    +L  +GY+V G+ + L     + K +             
Sbjct: 46  KKDKILVVISGGKDS-MALWHILASEGYNVTGMYINLGIGHYSDKSQQV---------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D ++ +   +     S      T   C  C   +K      V    G
Sbjct: 96  SFAQKNGLELIVKDIKKEYGLDI--YKLSKLLKRST---CSICGS-IKRYLFNKVAYDGG 149

Query: 138 ADVLATGHYI 147
              +ATGH +
Sbjct: 150 FSAVATGHNL 159


>gi|163782668|ref|ZP_02177665.1| hypothetical protein HG1285_17330 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882241|gb|EDP75748.1| hypothetical protein HG1285_17330 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 303

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 16/135 (11%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D      + RV+V +SGG DS  +  +L++ GY+  G  L L    + S+R         
Sbjct: 44  DFRMFTNEDRVLVTVSGGKDSLALWHVLRKLGYNADGFYLHL-GIGEYSERS-------- 94

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                   + +     V D  E                  +   C  C   VK  +   V
Sbjct: 95  RRKVEEFAERLGAKVIVVDLMEELAG------IPELKKATSREACSVCG-LVKRYNFNRV 147

Query: 133 TRQLGADVLATGHYI 147
            ++ G +V+ATGH +
Sbjct: 148 AKEYGYNVVATGHNL 162


>gi|154490240|ref|ZP_02030501.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC
           43184]
 gi|154089132|gb|EDN88176.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC
           43184]
          Length = 444

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++  V+V +SGG DS  +  +L   GY  I      +     S R        D    R 
Sbjct: 17  ENRPVLVGVSGGADSIALLTILVESGYSCIAAHCNFHLRGDESLR--------DEQFVRE 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               ++V   + D++ R         A  + + E         R +++          GA
Sbjct: 69  YARKLDVPFLMTDFDTR------KYAADRHLSIE------MAARELRYGWFEEQRAATGA 116

Query: 139 DVLATGHY 146
             +A  H+
Sbjct: 117 QAVAVAHH 124


>gi|319936857|ref|ZP_08011269.1| PP-loop family protein [Coprobacillus sp. 29_1]
 gi|319808125|gb|EFW04697.1| PP-loop family protein [Coprobacillus sp. 29_1]
          Length = 279

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 30/134 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + ++ V +SGG DS ++A L   LKR G   ++++ +++           K      ++ 
Sbjct: 36  NDKIAVCISGGKDSMLMAKLLQELKRHGKFDFELVFLSM-----DPGYNEKNRKKIEEN- 89

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  + +++                              PC  C   ++   L +  
Sbjct: 90  ------AEILDIPV-----------QFFESDIFQVVTNIEKSPCYLC-ARMRRGFLYAKA 131

Query: 134 RQLGADVLATGHYI 147
           ++LG + +A GH+I
Sbjct: 132 KELGCNKIALGHHI 145


>gi|311269579|ref|XP_003132551.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Sus scrofa]
          Length = 330

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V+V +SGGVDS+V  ALL     +     VI V +                  Q V +A
Sbjct: 95  KVLVLLSGGVDSTVCTALLNRALNQDQ---VIAVHIDN--------GFMRKRESQSVEEA 143

Query: 77  RRVCDTINVSHYVFDYEERFRN 98
            +    + +   V +    F N
Sbjct: 144 LK---KLGIQVKVINAAHSFYN 162


>gi|288926453|ref|ZP_06420373.1| GMP synthase, C- domain protein [Prevotella buccae D17]
 gi|288336744|gb|EFC75110.1| GMP synthase, C- domain protein [Prevotella buccae D17]
          Length = 331

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +L +   + RV++ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 23  ELKRQLGNDRVILGLSGGVDSSVCATLLNKAIGKNLTCIF---VDHGMLRKNE------- 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    + + ++    D  ++F              G T     +  R +   D + 
Sbjct: 73  -FKKVMEAYEGLGLNVVGVDASDKFFKD---------LEGVT---DPEKKRKIIGRDFVE 119

Query: 132 V----TRQL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
           V     +++  A  LA        I S    G   K                  +    +
Sbjct: 120 VFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPK 165

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR +  E+G+ 
Sbjct: 166 EMHLQLCEPLQWLFKDEVRRVGYELGMP 193


>gi|145594640|ref|YP_001158937.1| asparagine synthase (glutamine-hydrolyzing) [Salinispora tropica
           CNB-440]
 gi|145303977|gb|ABP54559.1| asparagine synthase (glutamine-hydrolyzing) [Salinispora tropica
           CNB-440]
          Length = 536

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V V +SGG+DSS+     +    D + VT                    D+  ARR+
Sbjct: 227 DLTVGVVLSGGLDSSLALLHARELHPDCVAVT-------------VGVPESPDLLYARRL 273

Query: 80  CDTINVSHYVFDYEER 95
              + V H V + + R
Sbjct: 274 AKDLGVPHEVVELQPR 289


>gi|152964718|ref|YP_001360502.1| GMP synthase [Kineococcus radiotolerans SRS30216]
 gi|151359235|gb|ABS02238.1| GMP synthase, large subunit [Kineococcus radiotolerans SRS30216]
          Length = 547

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 47/206 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDS+V  AL++R  G  +  V     +       +              
Sbjct: 242 DGKVICALSGGVDSAVAGALVQRAVGDQLTCVF---VDHGLLRAGEAEQVEKDF------ 292

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T  V  +V D  +RF +                +   +  R +   + + V  Q   
Sbjct: 293 VAAT-GVKLHVVDAVQRFAD------------ALDGVSDPEQKRKIIGREFIRVFEQAAR 339

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMC--------------RPMDLERDQSYFLFATTQQQ 184
           DV+A           G DG   R +                     +   + +       
Sbjct: 340 DVVA---------KEGTDGGEVRFLVQGTLYPDVVESGGGTGAATIKSH-HNVGGLPDDL 389

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL  + K+ VR +  ++GL 
Sbjct: 390 AFELVEPLRALFKDEVRAVGVQLGLP 415


>gi|330444537|ref|YP_004377523.1| PP-loop type ATPase [Chlamydophila pecorum E58]
 gi|328807647|gb|AEB41820.1| PP-loop type ATPase [Chlamydophila pecorum E58]
          Length = 247

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 42/196 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD----GY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +++VA+SGG DS +   L+ +     G+   D+  V             K SC A  + +
Sbjct: 35  KIIVALSGGKDS-LSLLLMLKAISGRGFPELDLHAV---------NISGKYSCGAEVNTH 84

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              ++CD + +             +++ P+A       TP  C  C++  +   L    +
Sbjct: 85  YLIKICDRLQIPF----------TSLVSPYAPE-----TP-ECYSCSQARR-RLLFQAAK 127

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++GA  +A GH+    +         +     M    D  +F        L  L F    
Sbjct: 128 EIGATAIAFGHHRDDLVQTTLMNLLHKAEFSGMLPVLDMVHFGITI----LRPLIFTPES 183

Query: 195 MKKESVRDLAREMGLD 210
           +    ++  A+E G  
Sbjct: 184 L----IKKFAKEHGFA 195


>gi|223935581|ref|ZP_03627497.1| NAD+ synthetase [bacterium Ellin514]
 gi|223895589|gb|EEF62034.1| NAD+ synthetase [bacterium Ellin514]
          Length = 545

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++ A +     G + V GV+L                +   + DA+ + +
Sbjct: 291 VLGLSGGIDSALTAVIAVDALGKEHVRGVSL-----------PSQYSSQGSLDDAQILAE 339

Query: 82  TINVSHYVFDYEERFR 97
            + + + V   +  F 
Sbjct: 340 RLGIRYDVVPIQPEFE 355


>gi|17232290|ref|NP_488838.1| argininosuccinate synthase [Nostoc sp. PCC 7120]
 gi|21263428|sp|Q8YMX6|ASSY_ANASP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|17133935|dbj|BAB76497.1| argininosuccinate synthase [Nostoc sp. PCC 7120]
          Length = 400

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELEPIRE 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                      V D +E F      P   + A  E   P      R +    L+    + 
Sbjct: 52  KALKSGASESLVADVKESFIKDYAFPAIQANALYENRYPLGTALARPLIAKILVEAAAKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|330470075|ref|YP_004407818.1| GMP synthase [Verrucosispora maris AB-18-032]
 gi|328813046|gb|AEB47218.1| GMP synthase [Verrucosispora maris AB-18-032]
          Length = 521

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+  +SGGVDS+V AAL+ +  G  +  V     +       +              
Sbjct: 221 DKEVICGLSGGVDSAVAAALVHKAVGDQLTCVF---VDHGLLRAGEAEQVEKDY------ 271

Query: 79  VCDTINVSHYVFDYEERF 96
           V  T  +   V D  +RF
Sbjct: 272 VAAT-GIKLKVVDAADRF 288


>gi|295100762|emb|CBK98307.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii L2-6]
          Length = 288

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 24/130 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           ++ V +SGG DS ++A L++          LQ ++             G +  + +++  
Sbjct: 42  KIAVCISGGKDSMLMAKLMQE---------LQRHSDVPFELVFLVMDPGYNEINRQKIES 92

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + +++   +      F + +      S A      PC  C   ++   L S  R+LG 
Sbjct: 93  NAELLHIPVTI------FESNIF-----SVANNTDKNPCYLC-ARMRRGHLYSKARELGC 140

Query: 139 DVLATGHYIR 148
           + +A GH+  
Sbjct: 141 NKIALGHHFN 150


>gi|262305999|gb|ACY45592.1| gln amidotransferase [Armillifer armillatus]
          Length = 196

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 19 KDMRVVVAMSGGVDSSVVAALL 40
          KD +V+V +SGGVDSSV AALL
Sbjct: 42 KDRKVLVFLSGGVDSSVCAALL 63


>gi|256425508|ref|YP_003126161.1| argininosuccinate synthase [Chitinophaga pinensis DSM 2588]
 gi|256040416|gb|ACU63960.1| argininosuccinate synthase [Chitinophaga pinensis DSM 2588]
          Length = 399

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+  SGG+D+S     L    GY+V  V                  + +++ +  R 
Sbjct: 2   KKVVLGFSGGLDTSYCVKYLTDDKGYEVHSV-----------IVNTGGFSAEELQEIERR 50

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS-DLLSVTRQLG 137
             ++ V  H   D    + ++ I              P       V  +  +    + +G
Sbjct: 51  AYSLGVKSHKTVDAIRSYYDSAIKYLVFGNVLKNNTYPLSVSAERVTQALAIAEHVKAVG 110

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 111 ADAVAHG 117


>gi|312881365|ref|ZP_07741162.1| argininosuccinate synthase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371005|gb|EFP98460.1| argininosuccinate synthase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 403

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 14/128 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +   V+   SGG+DS+ +  LLK  G  V  +   + +       +             
Sbjct: 15  KRATHVLTLFSGGLDSTYLLELLKGQGVKVTAL---VVDLGSGVDTEHLTLLTNHYE--- 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  +   + D ++ F    IV    + A      P     +R +  S+ + V  +L
Sbjct: 69  -------IDLKIVDAQKNFIEHSIVSAIQAQAMYLNDYPISSSLSRPIIVSNAVKVANEL 121

Query: 137 GADVLATG 144
           G D +   
Sbjct: 122 GCDAILHT 129


>gi|307107358|gb|EFN55601.1| hypothetical protein CHLNCDRAFT_52216 [Chlorella variabilis]
          Length = 448

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 64/200 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   YD   VT                  G+++  AR+  
Sbjct: 43  KKVVLAYSGGLDTSVILKWLQDT-YDCEVVTF-----------TADLGQGEELEPARQKA 90

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   V   Y+ D  E F    + P          +Y  G +    +   R +       +
Sbjct: 91  EAAGVKEIYIDDLREEFVGDFVFPMFRANSLYEGTYLLGTSIARPLIAKRQI------EI 144

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             ++GAD ++ G                           DQ              +RF L
Sbjct: 145 ALEVGADAVSHG---------------------ATGKGNDQ--------------VRFEL 169

Query: 193 GDM-KKESVRDLA--REMGL 209
           G    K  ++ +A  RE  L
Sbjct: 170 GYYGLKPDIKVIAPWREWDL 189


>gi|298384331|ref|ZP_06993891.1| PP-loop family protein [Bacteroides sp. 1_1_14]
 gi|298262610|gb|EFI05474.1| PP-loop family protein [Bacteroides sp. 1_1_14]
          Length = 248

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRD-----GYDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL KR       + VI V   +                  
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGKRARIYKPRFSVIAVHVVMNNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C++  V    ++           P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAYCESFGVPFVQYETS-------FDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEQGCNKIALGHH 140


>gi|193215981|ref|YP_001997180.1| argininosuccinate synthase [Chloroherpeton thalassium ATCC 35110]
 gi|193089458|gb|ACF14733.1| Argininosuccinate synthase [Chloroherpeton thalassium ATCC 35110]
          Length = 424

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  ++ +A SGG+D+SV+   L    YD  ++ VT             G+    +++ + 
Sbjct: 5   KKEKIALAYSGGLDTSVMIKWLAEK-YDAEIVAVT-------------GNLGQQKEIENL 50

Query: 77  RRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                    S  Y  D  + F N  I P   + A  E   P      R +    L+ V  
Sbjct: 51  EEKALKTGASNFYFLDLRKEFVNHYIWPALKANALYEGIYPLATALGRPLLAKTLVEVAL 110

Query: 135 QLGADVLATG 144
           Q G   +A G
Sbjct: 111 QEGCTAVAHG 120


>gi|78187788|ref|YP_375831.1| GMP synthase [Chlorobium luteolum DSM 273]
 gi|91206815|sp|Q3B1J3|GUAA_PELLD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78167690|gb|ABB24788.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium luteolum DSM 273]
          Length = 513

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 66/205 (32%), Gaps = 42/205 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +      V+  +SGGVDS+V A L+ +  G  +  V +                   
Sbjct: 213 DIRQRADKGTVICGISGGVDSTVAAVLVSKAIGKQLHCVFVDN--------------GLL 258

Query: 72  DVYDARRVCDT---INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVK 125
              +AR+V +    + ++  + D  + F      V  P       G T +   +    + 
Sbjct: 259 RKNEARKVMEFLKPLGLNITLADSADLFLGRLKGVASPEKKRKIIGRTFIRVFE--EHIN 316

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
               L                I S+   G     +                +    ++  
Sbjct: 317 EEKFL-------VQGTLYPDVIESQSVKGPSETIKSHHN------------VGGLPKRMK 357

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR + RE+G+ 
Sbjct: 358 LKLIEPLRELFKDEVRAVGRELGIP 382


>gi|75906642|ref|YP_320938.1| NAD synthetase [Anabaena variabilis ATCC 29413]
 gi|75700367|gb|ABA20043.1| NH(3)-dependent NAD(+) synthetase [Anabaena variabilis ATCC 29413]
          Length = 566

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 28/122 (22%)

Query: 23  VVVAMSGGVDSSVVA-----ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           VV+ +SGG+DS++VA     AL K    +V GV +                +   + DA 
Sbjct: 300 VVLGLSGGIDSALVATIATEALGKE---NVFGVLM-----------PSPYSSEHSISDAL 345

Query: 78  RVCDTINVSHYVF---DYEERFRNAVIVPFASSY--AAGETPLPCVDCNRTV----KFSD 128
            + D + +   +    D  + F ++++  FA +    A E     +  N  +    KF  
Sbjct: 346 ALADNLGIKTQILPIGDLMQSFDHSLVELFAGTEFGLAEENIQSRIRGNLLMAIANKFGY 405

Query: 129 LL 130
           LL
Sbjct: 406 LL 407


>gi|88802260|ref|ZP_01117787.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Polaribacter irgensii 23-P]
 gi|88781118|gb|EAR12296.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Polaribacter irgensii 23-P]
          Length = 511

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 28/199 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+ +SGGVDS+V A LL +  G ++  + +     RK             
Sbjct: 208 IQKQVGSDKVVLGLSGGVDSTVAAVLLHKAIGKNLYCIFVNNGLLRKNEFESVLAQYEG- 266

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLS 131
                     + ++    D  ERF  A++                   N  ++ F     
Sbjct: 267 ----------MGLNVKGVDASERFLTALVGLTDPEKKRK------AIGNSFIEVFDA--E 308

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
            T+  G   LA G      +             +           +          +  P
Sbjct: 309 ATQITGVSWLAQGTIYPDVIESVSVNGGPSATIKSHHN-------VGGLPDYMKLKIVEP 361

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR +   +G+D
Sbjct: 362 LRMIFKDEVRRVGASLGID 380


>gi|292655863|ref|YP_003535760.1| exsB protein [Haloferax volcanii DS2]
 gi|291372353|gb|ADE04580.1| exsB protein [Haloferax volcanii DS2]
          Length = 244

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
          +  +    D R VV +SGG+DS+  A    R GY++  +    Y  +  SK         
Sbjct: 1  MTTEPTSDDKRAVVLLSGGMDSATTAYEATRRGYELYALH-TSYGQKTESKEYDCARELA 59

Query: 72 DVYDARRVCDTINVS 86
          D  DAR   D +++ 
Sbjct: 60 DELDAR---DFLHIE 71


>gi|254511880|ref|ZP_05123947.1| glutamine-dependent NAD(+) synthetase [Rhodobacteraceae bacterium
           KLH11]
 gi|221535591|gb|EEE38579.1| glutamine-dependent NAD(+) synthetase [Rhodobacteraceae bacterium
           KLH11]
          Length = 552

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+ +SGGVDS++VAA+       G +V  V L                +   + DA  
Sbjct: 286 KVVLGLSGGVDSALVAAIAVDAIGAG-NVRCVML-----------PSEYTSQSSLDDAEA 333

Query: 79  VCDTINVSHYVFDYEE 94
           V   + V +      E
Sbjct: 334 VAKALGVHYDFVPISE 349


>gi|203287963|ref|YP_002222978.1| NH(3)-dependent NAD synthetase [Borrelia recurrentis A1]
 gi|201085183|gb|ACH94757.1| NH(3)-dependent NAD synthetase [Borrelia recurrentis A1]
          Length = 522

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA +     G + VIG+ +           KGS      V DA R+
Sbjct: 265 KVHLGVSGGIDSALVAYIACTALGANRVIGIFM-----PSRFSSKGS------VLDAERL 313

Query: 80  CDTINVSHYVFDYEERFR 97
            + +         E  F+
Sbjct: 314 ANELGFELIHMPIESMFQ 331


>gi|32401344|gb|AAP80844.1| asparagine synthetase [Griffithsia japonica]
          Length = 272

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 22/171 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D+ V V +SGG+DSS+VA++ K+           L +               DV  A++
Sbjct: 12  SDVPVGVFISGGLDSSLVASIAKK----------HLPDGYVFHSFSCGLEGSPDVRAAQK 61

Query: 79  VCDTINVSHYVFDYEERF----RNAVIVPFASSYA----AGETPLPCV--DCNRTVKFSD 128
           V D +   H+V  +           VI     +Y        TP+  +   C + VK   
Sbjct: 62  VADYLGTKHHVLTFTVEDGISALRDVI-YHLETYDVTTIRASTPMYLLSRLCKQYVKVVL 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
                 ++    L   H   +     ++  RR  +    D+ R        
Sbjct: 121 SGEGADEVYGGYLYF-HNAETERDFHEETVRRVKLLYTSDVLRGDRSTAAQ 170


>gi|168214426|ref|ZP_02640051.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens CPE str. F4969]
 gi|170714092|gb|EDT26274.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens CPE str. F4969]
          Length = 385

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         +  +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELAERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLIVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYETSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|296533919|ref|ZP_06896444.1| argininosuccinate synthase [Roseomonas cervicalis ATCC 49957]
 gi|296265753|gb|EFH11853.1| argininosuccinate synthase [Roseomonas cervicalis ATCC 49957]
          Length = 411

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 7   KKVVLAYSGGLDTSVILKWLQTT-YQCEVVTF-----------TADLGQGEELGPARDKA 54

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +        D  E F    + P           Y  G +    +   R +      
Sbjct: 55  RLLGIKEENIFIDDLREEFTRDFVFPMFRANALYEGCYLLGTSIARPLISKRQI------ 108

Query: 131 SVTRQLGADVLATG 144
            +  Q+GAD +A G
Sbjct: 109 EIAEQVGADAVAHG 122


>gi|291524808|emb|CBK90395.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale DSM 17629]
          Length = 247

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 70/230 (30%), Gaps = 42/230 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           D +   ++ ++ + +SGG DS  +   L   R  Y V             +         
Sbjct: 16  DYNMITENDKIAIGVSGGKDSLTLLYALSGIRSFYPV--------PFELVAIAVDLGYED 67

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D+   + +CD ++V  YV       +  +         +     PC  C +  K   L 
Sbjct: 68  FDLEPVKALCDELSVEFYVV------KTDIGRISLE--KSKNQASPCSWCAKLRK-GALN 118

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ-----QQL 185
                +G + +A  H++       DD      +     L   Q Y     TQ       +
Sbjct: 119 DFALSVGCNKIAYAHHM-------DDIIETMFL---SLLYEGQFYSFAPVTQLDGSGLAI 168

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
                 +G+     V+    +  L +         C        + VK++
Sbjct: 169 IRPLMYVGE---SDVKGFKNKYNLPVCKNP-----CPYDGHTRREYVKQL 210


>gi|237750879|ref|ZP_04581359.1| NH(3)-dependent NAD synthetase [Helicobacter bilis ATCC 43879]
 gi|229373324|gb|EEO23715.1| NH(3)-dependent NAD synthetase [Helicobacter bilis ATCC 43879]
          Length = 253

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 49/233 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+ +SGG+DS+VV  L  +           L  + KA     +  + + + D+  +C
Sbjct: 26  KQVVIGLSGGIDSAVVTLLCHKA----------LCGNTKALLMPSTSSSKESIEDSILLC 75

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           ++  + + +   ++   +++       +        C      ++ + L  + +      
Sbjct: 76  ESFKIDYAILPIKD--FDSIFCNLYKDHTRLSRGNFC----SRMRMATLYHIAQM----- 124

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                    RL +G   K   ++              + T    L     P+G++ K  +
Sbjct: 125 -------EQRLVIGTSNKTEIML-------------GYGTIFGDLACAINPIGNLYKTQI 164

Query: 201 RDLAREMGLD--IADKSDSQDICFVQQGK------YFDVVKRINAGIALEGDI 245
             LA  + +   I DK+ S D+   Q  +      Y ++   + +    +GDI
Sbjct: 165 YMLAELLEIPRQIIDKAPSADLYAGQTDENELGYSYDEIDPFLESYEKAKGDI 217


>gi|320352798|ref|YP_004194137.1| Thiamine biosynthesis protein [Desulfobulbus propionicus DSM 2032]
 gi|320121300|gb|ADW16846.1| Thiamine biosynthesis protein [Desulfobulbus propionicus DSM 2032]
          Length = 347

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 49/303 (16%)

Query: 21  MRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R+ + + SGG+DS +   ++   G  V+ +          +        GQ    AR +
Sbjct: 3   KRLALGLFSGGLDSILACRVVADQGIRVVALKF-------VTPFFDHDLLGQQEAYARAM 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--- 136
            +   +   V D  E +   +  P   ++  G+   PC+DC        +L   R+L   
Sbjct: 56  REQYGLDVQVVDISEGYLRLLENP---AHGFGKHFNPCIDCKI-----LMLRRARELMGV 107

Query: 137 -GADVLATGHYIRSRLY---------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            GA  L TG  +  R           +  D     ++ RP+   +               
Sbjct: 108 YGASFLITGEVLGQRPMSQRRDTLRVIERDSGCGGLLLRPL-SAKLMEPTQAELEGWVDR 166

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246
           +  F      +   + LA ++G+   D       C +        +K    G+   G+  
Sbjct: 167 ERLFDFSGRGRRQQKQLAAQLGIT--DYPTPAGGCMLTDPNLAARIKHFYHGLFSFGEQR 224

Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL 305
            ++   L          +G++  L   +    F+V  D ++++R+     E+L     +L
Sbjct: 225 AVDDVRL--------LVVGRQFKLDENL---WFIVGRDERDNNRL-----EALRSPDDWL 268

Query: 306 REI 308
             +
Sbjct: 269 VRM 271


>gi|318040804|ref|ZP_07972760.1| ExsB [Synechococcus sp. CB0101]
          Length = 225

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          +  +SGG+DS+  AAL   DG  VIG+          S   G     +++  A R+   +
Sbjct: 5  IALLSGGLDSATAAALALEDGQRVIGL----------SFDYGQ-RHRRELEAAARIAAQL 53

Query: 84 NV-SHYVF 90
           +  H+  
Sbjct: 54 GLAEHHTI 61


>gi|308274754|emb|CBX31353.1| hypothetical protein N47_E48650 [uncultured Desulfobacterium sp.]
          Length = 150

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
          ++ +  KD ++++ +SGGVDSSV A L+ + 
Sbjct: 28 EIRETVKDNKIILGLSGGVDSSVTAMLIHKA 58


>gi|296803839|ref|XP_002842772.1| asparagine synthase [Arthroderma otae CBS 113480]
 gi|238846122|gb|EEQ35784.1| asparagine synthase [Arthroderma otae CBS 113480]
          Length = 673

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 20  DMRVVVAMSGGVD-SSVV--AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD- 75
           D+ V V +SGG+D SSV    A L + G      T +L +   +   K  C   Q   D 
Sbjct: 266 DVPVAVYLSGGIDSSSVAGMVAELMKQG------T-KLGSESCSVPSKMKCFTVQFDEDS 318

Query: 76  -------ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                  A+R    + V  +   +      A++  F  +    E PLP ++    +    
Sbjct: 319 GADESEIAQRTAKWLGVDIH---FVRMDEEALVSRFEDAVWNSEIPLPDLNGMGRL---A 372

Query: 129 LLSVTRQLGADVLATGH 145
           L       G  V+ TG 
Sbjct: 373 LAEAVHSQGIKVVVTGE 389


>gi|258542584|ref|YP_003188017.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633662|dbj|BAH99637.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636721|dbj|BAI02690.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639774|dbj|BAI05736.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642830|dbj|BAI08785.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645885|dbj|BAI11833.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648938|dbj|BAI14879.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651925|dbj|BAI17859.1| argininosuccinate synthase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654982|dbj|BAI20909.1| argininosuccinate synthase [Acetobacter pasteurianus IFO 3283-12]
          Length = 413

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR+ 
Sbjct: 11  KKVVLAYSGGLDTSVILRWLQNTYGCEVVTFT-------------ADLGQGEELEPARKK 57

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   V      D  E F    + P           Y  G +    +   R +       
Sbjct: 58  AEMFGVKEIFVEDLRETFVKDFVFPMFRANTLYEGQYLLGTSIARPLIAQRQI------E 111

Query: 132 VTRQLGADVLATG 144
           +   +GAD +A G
Sbjct: 112 IAEAVGADAVAHG 124


>gi|108563408|ref|YP_627724.1| GMP synthase [Helicobacter pylori HPAG1]
 gi|123246942|sp|Q1CSM2|GUAA_HELPH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|107837181|gb|ABF85050.1| GMP synthase [Helicobacter pylori HPAG1]
          Length = 508

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANDKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+  R L +E+G+ 
Sbjct: 358 PLRELFKDEARLLGKELGIS 377


>gi|83953093|ref|ZP_00961815.1| argininosuccinate synthase [Sulfitobacter sp. NAS-14.1]
 gi|83842061|gb|EAP81229.1| argininosuccinate synthase [Sulfitobacter sp. NAS-14.1]
          Length = 406

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 61/214 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +     YV D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAEMMGASEIYVEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LV 104

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCD 187
            +  + GAD +A G                           DQ  F    +A        
Sbjct: 105 EIAAETGADAVAHG---------------------ATGKGNDQVRFELAAYALNPDI--K 141

Query: 188 LRFP-----LGDMKKESVRDLAREMGLDIADKSD 216
           +  P     L    K  + + A +  + +A    
Sbjct: 142 VIAPWREWDLSSRTK--LIEFAEKHQIPVAKDKR 173


>gi|46579504|ref|YP_010312.1| hypothetical protein DVU1091 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448918|gb|AAS95571.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233318|gb|ADP86172.1| Thiamine biosynthesis protein-like protein [Desulfovibrio vulgaris
           RCH1]
          Length = 368

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 40/203 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V  +SGG+DS +   L++  G  V  +          S   G     +           +
Sbjct: 9   VALLSGGLDSILAVKLVEEQGLRVKCLHF-------VSPFFGKPSQVRRWRSIYA----L 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----GAD 139
           +++    D  + F   +       +  G+   PCVDC        +L   R+L    GA 
Sbjct: 58  DIT--TVDVSDDFARMLAER--PQHGFGKVMNPCVDCKI-----LMLRRARELMTQYGAT 108

Query: 140 VLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLE-RDQSYF--LFATTQQQLCD 187
            + TG  +  R              D + R ++ RP+  +  D + F       +++L  
Sbjct: 109 FIITGEVLGQRPMSQRRDTLNVIRRDAEVRDLLLRPLSAKLLDPTPFELSGMVDRERLLA 168

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +    G  +KE +  LA    L+
Sbjct: 169 IS---GRGRKEQM-ALAERFALE 187


>gi|261403856|ref|YP_003248080.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocaldococcus vulcanius M7]
 gi|261370849|gb|ACX73598.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanocaldococcus vulcanius M7]
          Length = 376

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 47/197 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              R +  +S G+DS V A ++ R G  V+ + L++              + + +   R+
Sbjct: 183 SQGRALCLISDGIDSPVAAFMMIRRGCRVVLLHLKM--------------SEEALNKVRK 228

Query: 79  VCDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSV 132
           + + +     ++   V+DY++   N +I    S          C+ C + + K +     
Sbjct: 229 IVEILSDYDTDLEFVVYDYKKD-MNNLIEK-LSQIKKEN--YTCIFCKKNMLKVAK--KY 282

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
            + L  D + TG  +                         Q+        + +  L   P
Sbjct: 283 AKYLDCDAIITGDNLGQVAS--------------------QTLKNLRVISEGVDYLILRP 322

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K+ +  +A+ +G
Sbjct: 323 LIGLDKDEIIKIAKNIG 339


>gi|117927580|ref|YP_872131.1| GMP synthase [Acidothermus cellulolyticus 11B]
 gi|117648043|gb|ABK52145.1| GMP synthase (glutamine-hydrolyzing) [Acidothermus cellulolyticus
           11B]
          Length = 522

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 60/194 (30%), Gaps = 36/194 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +  +SGGVDS+V AAL++R  G  +  V     +       +              V  T
Sbjct: 226 ICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEAEQVEQDF------VAAT 276

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             V  +V D  +RF  A   V+ P       G            ++         Q  A 
Sbjct: 277 -GVRLHVVDAADRFLAALSGVVDPEEKRRIIGR---------EFIRV---FEAAAQDIAA 323

Query: 140 VLATGHYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                  ++  LY   V   G       +           +          L  PL  + 
Sbjct: 324 SAPVEFLVQGTLYPDVVESGGGANAATIKSHHN-------VGGLPPDLRFRLVEPLRTLF 376

Query: 197 KESVRDLAREMGLD 210
           K+ VR +  E+GL 
Sbjct: 377 KDEVRAVGAELGLP 390


>gi|134045948|ref|YP_001097434.1| putative ATP binding-like protein [Methanococcus maripaludis C5]
 gi|132663573|gb|ABO35219.1| putative ATP binding related protein [Methanococcus maripaludis C5]
          Length = 291

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 39/176 (22%)

Query: 9   LNSLDLDKNPKDMR--V----------------VVAMSGGVDSSVVAALL-KRDGYDVIG 49
           LN+L   +N ++M+  V                ++  SGG DS V   LL K      + 
Sbjct: 37  LNALKFPRNFEEMKNEVMEYLDELRIRNNKYNCILGFSGGKDSVVALYLLVKELRIRPLC 96

Query: 50  VTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA 109
           VT+                A + + + + +     V   V +            F  + +
Sbjct: 97  VTVDN-----------GYLAEEALTNCKNIAKYFGVDWLVIN------KDFTKFFKETIS 139

Query: 110 AGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
            GE+  PC  C+  +   ++    RQ   D + TGH +        + K+   M R
Sbjct: 140 KGES--PCRVCS-DMNMHEIWQFARQTNIDTIVTGHELPFGTTAIREMKKGINMLR 192


>gi|33241175|ref|NP_876117.1| PP family ATPase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238705|gb|AAQ00770.1| ATP-utilizing enzyme, PP-loop superfamily [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 285

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 53/215 (24%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V +A SGGVDSS++AA+ K            L N+  A     +  A   + +AR   
Sbjct: 27  KKVCIAYSGGVDSSLIAAIGKEQ----------LDNNAIAVTGVSASLAPHLLEEARLQA 76

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLG 137
             I + H     +E   N +  P   +Y A     P   C  C + +  ++L  + ++  
Sbjct: 77  RWIGIEH-----QECKTNELQDP---NYKA----NPIDRCFACKKEL-HNNLGIIAKKFS 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
              +  G                       D  +D   +        L  ++ PL +  +
Sbjct: 124 NAQVVDGVNA--------------------DDIKD---YRPGIEAAHLAGVKSPLAELQI 160

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
            K S+R++++ +GL   DK      C   +  Y D
Sbjct: 161 NKASIREISKALGLPWWDKP--AQPCLASRFHYGD 193


>gi|83942044|ref|ZP_00954506.1| argininosuccinate synthase [Sulfitobacter sp. EE-36]
 gi|83847864|gb|EAP85739.1| argininosuccinate synthase [Sulfitobacter sp. EE-36]
          Length = 406

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 61/214 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +     YV D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAEMMGASEIYVEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LV 104

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCD 187
            +  + GAD +A G                           DQ  F    +A        
Sbjct: 105 EIAAETGADAVAHG---------------------ATGKGNDQVRFELAAYALNPDI--K 141

Query: 188 LRFP-----LGDMKKESVRDLAREMGLDIADKSD 216
           +  P     L    K  + + A +  + +A    
Sbjct: 142 VIAPWREWDLSSRTK--LIEFAEKHQIPVAKDKR 173


>gi|262193715|ref|YP_003264924.1| argininosuccinate synthase [Haliangium ochraceum DSM 14365]
 gi|262077062|gb|ACY13031.1| argininosuccinate synthase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV    +    G +VI                     G+D+  AR+  
Sbjct: 6   KVVLAYSGGLDTSVAVRWIAETYGCEVIC-------------YCADVGQGEDLEGARQKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLS 131
            ++      V D  E F    + P         S Y  G +   PC+          L+ 
Sbjct: 53  LSLGASKAIVHDLRETFVRDYVFPALRAGAIYESEYLLGTSLARPCITHG-------LME 105

Query: 132 VTRQLGADVLATG 144
             R+ GAD +  G
Sbjct: 106 AVREEGADAIGHG 118


>gi|78214180|ref|YP_382959.1| argininosuccinate synthase [Synechococcus sp. CC9605]
 gi|119361338|sp|Q3AG78|ASSY_SYNSC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|78198639|gb|ABB36404.1| argininosuccinate synthase [Synechococcus sp. CC9605]
          Length = 403

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 59/206 (28%), Gaps = 41/206 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +              G ++   R+
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEDVITFAADLGQGDELEPIRQ 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALDAGASQSLVGDLIEPFIKDFAFPAIRANALYEGRYPLSTALARPLIAKRLVEVAREV 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL- 192
           GAD +A G                          +      F      L     +  P  
Sbjct: 112 GADAVAHG-----------------------CTGKGNDQVRFDVAIAALAPDLKVLTPAR 148

Query: 193 -GDMKKESVRDLAREMGLDIADKSDS 217
              M +E         GL       S
Sbjct: 149 EWGMSREETIAYGERFGLPAPVSKKS 174


>gi|255348575|ref|ZP_05380582.1| hypothetical protein Ctra70_01145 [Chlamydia trachomatis 70]
 gi|255503115|ref|ZP_05381505.1| hypothetical protein Ctra7_01155 [Chlamydia trachomatis 70s]
          Length = 283

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 62  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 114

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 115 YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 156

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 157 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPVVDMVNFGITI----LRPLIFIPE 212

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A+E G  
Sbjct: 213 DL----IRKFAKESGFA 225


>gi|224370118|ref|YP_002604282.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223692835|gb|ACN16118.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 244

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 50/244 (20%)

Query: 22  RVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+VV +SGG+DS  +  +L   K+         L  +                D+     
Sbjct: 28  RIVVGVSGGMDSLTLLRMLVDLKKK------APLDFHLVPVYVDPGFEPSFAGDLK--AY 79

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V   +     V                 +++      PC  C+R ++   L  + R  G 
Sbjct: 80  VEFHLG-PLMV---------ERTDHGIVAHSDENQENPCFLCSR-LRRKRLFEIARDQGC 128

Query: 139 DVLATGH--------YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + +A GH           +  Y G  G  +            QS+F           +  
Sbjct: 129 NTIALGHNKDDLIETLFINMFYSGAIGTMKPC----------QSFFDGTLE------IIR 172

Query: 191 PLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVK-RINAGIALEGDIVHL 248
           PL  ++K  +  L+  +G         S    F ++     +++        ++G+I   
Sbjct: 173 PLAYVEKRRIVSLSESLGFPAFKNPCPSDG--FTKRTAVRHMLEGLYAENPHIKGNIFKA 230

Query: 249 NGQI 252
            G++
Sbjct: 231 MGRV 234


>gi|166154427|ref|YP_001654545.1| hypothetical protein CTL0469 [Chlamydia trachomatis 434/Bu]
 gi|166155302|ref|YP_001653557.1| hypothetical protein CTLon_0464 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335686|ref|ZP_07223930.1| hypothetical protein CtraL_02630 [Chlamydia trachomatis L2tet1]
 gi|165930415|emb|CAP03908.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
 gi|165931290|emb|CAP06862.1| conserved hypothetical protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 254

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 33  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 86  YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 128 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPVVDMVNFGITI----LRPLIFIPE 183

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A+E G  
Sbjct: 184 DL----IRKFAKESGFA 196


>gi|218779090|ref|YP_002430408.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760474|gb|ACL02940.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 252

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 30/135 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQL-YNSRKASKRKGSCCAGQ 71
           +  RV V +SGG DS  +  +L+         Y + G+ +   ++   A +    C +  
Sbjct: 36  EGDRVAVGISGGKDSFTLMWILRERLSRIPVKYHLEGIHIDPGFDDSSADEIAQYCESMN 95

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                 +      +  +     +  R                  PC  C+R ++   L  
Sbjct: 96  YRLRVEK--TDFGIRAH----SDENRE----------------NPCFLCSR-LRRQRLFE 132

Query: 132 VTRQLGADVLATGHY 146
           + +++G   +A GH+
Sbjct: 133 LAQEMGCTKIALGHH 147


>gi|221069081|ref|ZP_03545186.1| NAD+ synthetase [Comamonas testosteroni KF-1]
 gi|220714104|gb|EED69472.1| NAD+ synthetase [Comamonas testosteroni KF-1]
          Length = 567

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV  SGG+DS++  AL     G + V+G+T+             S  +   V D+  +C
Sbjct: 301 VVVGSSGGIDSALTLALAVDALGAENVVGITM-----------PSSYSSAGSVDDSVLLC 349

Query: 81  DTINVSHY 88
             + +  Y
Sbjct: 350 RNLGIRLY 357


>gi|76788939|ref|YP_328025.1| TtcA [Chlamydia trachomatis A/HAR-13]
 gi|237804562|ref|YP_002888716.1| hypothetical protein CTB_2111 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167469|gb|AAX50477.1| TtcA [Chlamydia trachomatis A/HAR-13]
 gi|231272862|emb|CAX09772.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 254

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 33  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 86  YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 128 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPVVDMVNFGITI----LRPLIFIPE 183

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A+E G  
Sbjct: 184 DL----IRKFAKESGFA 196


>gi|325269171|ref|ZP_08135791.1| GMP synthase [Prevotella multiformis DSM 16608]
 gi|324988558|gb|EGC20521.1| GMP synthase [Prevotella multiformis DSM 16608]
          Length = 514

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 35/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D RV++ +SGGVDSSV A LL +  G ++  +     +     K +       
Sbjct: 206 EIRRQVGDDRVILGLSGGVDSSVCAVLLNKAIGKNLTCIF---VDHGMLRKNE------- 255

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                      + ++    D  E+F      V  P       G   +     N   K   
Sbjct: 256 -FAKVMEAYKGLGLNVIGVDASEKFFKDLEGVTEPEQKRKIIGRDFVEVF--NAEAK--- 309

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                +   A  LA G     R+          ++ +           +    ++    L
Sbjct: 310 -----KITDARWLAQGTIYPDRIESLSITG---MIIKSHHN-------VGGLPEEMRLQL 354

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  ++G+ 
Sbjct: 355 CEPLRWLFKDEVRRVGYQLGMP 376


>gi|268608134|ref|ZP_06141861.1| NAD+ synthetase [Ruminococcus flavefaciens FD-1]
          Length = 254

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + + V+ +SGG DSSV AA+  +  G D VIGV +      +  +    C         R
Sbjct: 29  ETKAVIGISGGKDSSVAAAVCVKALGKDRVIGVLM-----PQGEQADIDCS--------R 75

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQ 135
            + DT+ + +Y  +  E      +  F         P      N    ++ + L +V   
Sbjct: 76  LLVDTLGIQNYTINIGET-----VSSFMGELKKHIEPTNQAIINTPARIRMTTLYAVAAC 130

Query: 136 LGADVLAT 143
           +G  V+ T
Sbjct: 131 VGGRVVNT 138


>gi|326202249|ref|ZP_08192118.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987367|gb|EGD48194.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 239

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 30/206 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +      ++ V +SGG DS +      R         LQ +  +K      S   G  
Sbjct: 17  DYNMIEDGDKIAVGVSGGKDS-MTLLTALRQ--------LQNFYPKKFELEAISLTMGIG 67

Query: 73  VYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D   V   C  I V++ V          +I          +   PC  C   ++   L
Sbjct: 68  NADYTPVVEYCKQIGVNYSV-------EETLIGKIIFEVRNEK--NPCSMC-ANLRRGAL 117

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            +  ++LG + +A GH+         D     ++       R  ++       +Q   L 
Sbjct: 118 HNKAKKLGCNKVALGHH--------RDDAVETLLLSSFYEGRIHTFSPVTYLDRQDLYLI 169

Query: 190 FPLGDMKKESVRDLAREMGLDIADKS 215
            PL   +++ ++ + +   L I    
Sbjct: 170 RPLIYTEEKQIKAVVKSESLPIVKSP 195


>gi|308270584|emb|CBX27196.1| Probable glutamine-dependent NAD(+) synthetase [uncultured
           Desulfobacterium sp.]
          Length = 558

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 18/87 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DS++ A +  +  G + V+ V +             S  + ++  D +++
Sbjct: 300 KVVLGLSGGIDSAITAFIAAQAIGPENVLTVFM-----------PSSYTSKENYGDTQKL 348

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS 106
              I   + +        ++V   F  
Sbjct: 349 AQNIGTKYEIIPI-----DSVFEGFLK 370


>gi|197303257|ref|ZP_03168298.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC
           29176]
 gi|197297683|gb|EDY32242.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           RV V +SGG DS  +   +++         LQ +  +       +C  G +  D   V  
Sbjct: 25  RVAVGVSGGKDSLTLLYAMRQ---------LQRFYPKNFELSAITCNVGFEGMDFTGVSD 75

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
            CD++ + +   D +            +     E P   PC  C +  K   +     +L
Sbjct: 76  FCDSLKIPYEQVDTK-----------IAEIVFQENPEIRPCSLCAKLRK-GAMYKQLAEL 123

Query: 137 GADVLATGH 145
           G + +A  H
Sbjct: 124 GINKIAYAH 132


>gi|154344038|ref|XP_001567963.1| thiamine biosynthesis-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065297|emb|CAM40725.1| thiamine biosynthesis-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 795

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 66/212 (31%), Gaps = 56/212 (26%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+  +SGG+DS V A  +   G  V GV      +  AS  + +          RR+
Sbjct: 223 NQRVLALISGGIDSPVAAYRMMTRGCLVNGVHFLNSTNDTASVMEKN----------RRI 272

Query: 80  CDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           C+ +         +  D        V             P      NRT+ +   + ++ 
Sbjct: 273 CERLSSVQGRFDMHYVDISTLQSQIV----------ANVPN----HNRTLIYKWFM-LSL 317

Query: 135 QLGAD---VLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             G D    + TG      +   V +       +C+                      + 
Sbjct: 318 AAGFDDSSFIVTGDSAGQVASQTVHNISTLYPTICKA---------------------VI 356

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
            PL  + K  + D AR++        +  D C
Sbjct: 357 APLIGVTKNFIIDEARKINTFDFSIQEGADCC 388


>gi|91776061|ref|YP_545817.1| argininosuccinate synthase [Methylobacillus flagellatus KT]
 gi|119361290|sp|Q1H0L1|ASSY_METFK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|91710048|gb|ABE49976.1| argininosuccinate synthase [Methylobacillus flagellatus KT]
          Length = 406

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADIGQGEELEPAREKAR 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
              V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  QFGVKEIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
           ++  AD ++ G
Sbjct: 108 QETNADAVSHG 118


>gi|291518754|emb|CBK73975.1| conserved hypothetical protein TIGR00268 [Butyrivibrio fibrisolvens
           16/4]
          Length = 269

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 45/218 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            K  RV VA S GVDS+ +    ++  G D I +T                   ++  +A
Sbjct: 15  KKLDRVAVAFSSGVDSTFLLYAARQALGDDAIAIT-----------AISDLIPKREQDEA 63

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            + C+   +   +      F              G     C  C + + +S + ++    
Sbjct: 64  SQFCNERGIK-QIVYKANPFEEDGFS--------GNPSNRCYICKKYL-YSHMKALALGY 113

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               +  G        + D+G  R  M             +          +        
Sbjct: 114 DIQHVLEG------SNLDDEGDYRPGMQ-----------AIAELGILSPLRVI----GFT 152

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           K+ +RDL+ + GL  A+K      C   +  Y + +  
Sbjct: 153 KQEIRDLSAQFGLPTANKPSF--ACLASRIPYEETITE 188


>gi|260888183|ref|ZP_05899446.1| GMP synthase [Selenomonas sputigena ATCC 35185]
 gi|330838474|ref|YP_004413054.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas sputigena ATCC
           35185]
 gi|260862017|gb|EEX76517.1| GMP synthase [Selenomonas sputigena ATCC 35185]
 gi|329746238|gb|AEB99594.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas sputigena ATCC
           35185]
          Length = 517

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKAS 61
           +S   +     L +     + + A+SGGVDSSV A LL +  G  +  V           
Sbjct: 202 MSSFVKTTVEALREKIGAGKALCALSGGVDSSVAAVLLSKAIGKQLTCVF-----VDHGL 256

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV 118
            RK      + V+ A       +++    D +ERF      V  P       GE      
Sbjct: 257 LRKDEGDEVEAVFGAEGP---YDLNFIRVDAKERFYEKLKGVTEPEKKRKIIGEEF---- 309

Query: 119 DCNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
                       +  +++G  D L  G        V + G  +  + +           +
Sbjct: 310 -------IRVFEAEAKKIGKVDFLVQG---TIYPDVIESGLGKSAVIKSHHN-------V 352

Query: 178 FATTQ-QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                     ++  PL  + K+ VR   RE+G+ 
Sbjct: 353 GGLPDCVDFKEIVEPLRLLFKDEVRKAGRELGIP 386


>gi|29336963|sp|Q9K4Z3|ASSY_MORPR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|8671265|emb|CAB95017.1| argininosuccinate synthetase [Moritella profunda]
          Length = 404

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 44/142 (30%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VVVA SGG+D+SV+   L+             Y+         +C     V D  +  
Sbjct: 8   KKVVVAYSGGLDTSVILPWLQE-----------NYD---------NCEIVAFVADVGQGA 47

Query: 81  DTI-NV----------SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNR 122
           + +  +            YV D ++      I P          +Y  G +    +    
Sbjct: 48  EELEGIEAKALASGASECYVVDLKDELVENYIYPTLKTGAVYEGTYLLGTSMARPIIAKA 107

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
            V       + R++GAD L  G
Sbjct: 108 QV------EIARKVGADALCHG 123


>gi|212704763|ref|ZP_03312891.1| hypothetical protein DESPIG_02827 [Desulfovibrio piger ATCC 29098]
 gi|212671826|gb|EEB32309.1| hypothetical protein DESPIG_02827 [Desulfovibrio piger ATCC 29098]
          Length = 382

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 30/139 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---ARRV 79
           VVV  SGG+DS + A +++  G  V  +                 C      D     R 
Sbjct: 26  VVVLFSGGLDSILAAKVMEEQGLRVCCLH----------------CHSPFFGDPGAVERW 69

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR----Q 135
            +   +     D  + F    ++    ++  G+   PCVDC        LL   R     
Sbjct: 70  SNLYGLDIRTLDVSDDFCA--MLRARPAHGFGKVMNPCVDCKI-----LLLRHARLYMES 122

Query: 136 LGADVLATGHYIRSRLYVG 154
           +GA +LATG  +  R    
Sbjct: 123 IGARLLATGEVMGQRPMSQ 141


>gi|297538087|ref|YP_003673856.1| argininosuccinate synthase [Methylotenera sp. 301]
 gi|297257434|gb|ADI29279.1| argininosuccinate synthase [Methylotenera sp. 301]
          Length = 406

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+ + Y    VT                  G+++  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDE-YQCEVVTF-----------TADLGQGEELEPARAKAK 53

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
              V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 54  AAGVKEIYIDDVREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEIA 107

Query: 134 RQLGADVLATG 144
           R+  AD ++ G
Sbjct: 108 RETNADAISHG 118


>gi|257060879|ref|YP_003138767.1| NAD synthetase [Cyanothece sp. PCC 8802]
 gi|256591045|gb|ACV01932.1| NAD+ synthetase [Cyanothece sp. PCC 8802]
          Length = 561

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGG+DS++VAA+     G  +V+G+ +                +   + DA ++
Sbjct: 306 KVILGLSGGIDSALVAAIATEAIGANNVLGILM-----------PSPYSSDHSLKDAEKL 354

Query: 80  CDTINVSHYVF 90
              + ++H   
Sbjct: 355 VKNLGINHQTL 365


>gi|218247801|ref|YP_002373172.1| NAD synthetase [Cyanothece sp. PCC 8801]
 gi|218168279|gb|ACK67016.1| NAD+ synthetase [Cyanothece sp. PCC 8801]
          Length = 561

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGG+DS++VAA+     G  +V+G+ +                +   + DA ++
Sbjct: 306 KVILGLSGGIDSALVAAIATEAIGANNVLGILM-----------PSPYSSDHSLKDAEKL 354

Query: 80  CDTINVSHYVF 90
              + ++H   
Sbjct: 355 VKNLGINHQTL 365


>gi|158522807|ref|YP_001530677.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511633|gb|ABW68600.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 331

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 50/236 (21%)

Query: 20  DMRV-VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             +V  + + SGG+DS + A +L+  G +V       +   +      +           
Sbjct: 5   KQKVRALGLCSGGLDSMLAALVLRDQGIEV------CWVCFETPFFSAAKAVRAAEA--- 55

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                +++   V +   R+   +  P       G+   PC+DC+  + F+    + ++ G
Sbjct: 56  -----LDIPLTVQNITGRYVPMLKNP---PCGYGQHMNPCMDCHALM-FNIAGGIMKEKG 106

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP------ 191
            D L +G  +  R         R             S F     +  L  L  P      
Sbjct: 107 YDFLFSGEVVGQRPMSQTKPSLRY--------VEKHSGFDGYILRP-LSALLLPETEPEK 157

Query: 192 ------------LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
                        G  +K  + ++AR  G  ++D       C +    +   ++ +
Sbjct: 158 AGLVDRNGLLGLSGRSRKPQM-EMARRFG--VSDYPSPAGGCLLTDKGFSQRLRDL 210


>gi|116754039|ref|YP_843157.1| NAD+ synthetase [Methanosaeta thermophila PT]
 gi|116665490|gb|ABK14517.1| NH(3)-dependent NAD(+) synthetase [Methanosaeta thermophila PT]
          Length = 567

 Score = 48.2 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGGVDSS+ AA+     G + VIGV +                + + + DA  +  
Sbjct: 316 VIGLSGGVDSSLTAAIAAEALGPENVIGVLM-----------PSPYTSRESMEDALELAR 364

Query: 82  TINVSHYVFDYEE 94
            +++        E
Sbjct: 365 NLSIQTITIPISE 377


>gi|300782713|ref|YP_003763004.1| GMP synthase (glutamine-hydrolysing) [Amycolatopsis mediterranei
           U32]
 gi|299792227|gb|ADJ42602.1| GMP synthase (glutamine-hydrolysing) [Amycolatopsis mediterranei
           U32]
          Length = 518

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 34/197 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AAL++R  G  +  V +         +        QD   A  
Sbjct: 218 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVFV----DHGLLRAGERTQVEQDFVSAT- 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 V+    D  +RF +A          AG T     +  R +   + + V  Q   
Sbjct: 273 -----GVNLVTIDARQRFLDA---------LAGVT---DPEQKRKIIGREFIRVFEQAER 315

Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           D+ A G Y           V + G             +            Q   L  PL 
Sbjct: 316 DLKAQGDYKFLVQGTLYPDVVESGGGE-----GTANIKSHHNVGGLPDDLQFE-LVEPLR 369

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR +  E+GL 
Sbjct: 370 LLFKDEVRRVGLELGLP 386


>gi|262306023|gb|ACY45604.1| gln amidotransferase [Carcinoscorpius rotundicauda]
          Length = 196

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
           + K   D +V++ +SGGVDS+V AAL+ R  G + +I + +     RK    +       
Sbjct: 37  IKKTVGDKKVLMLVSGGVDSTVCAALVHRALGEERLIAIHVNNGFMRKNESLQVEHSL-- 94

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRN 98
                      + +   V D   +F N
Sbjct: 95  ---------RQLGLKLRVVDASHQFYN 112


>gi|319952511|ref|YP_004163778.1| argininosuccinate synthase [Cellulophaga algicola DSM 14237]
 gi|319421171|gb|ADV48280.1| argininosuccinate synthase [Cellulophaga algicola DSM 14237]
          Length = 395

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S  A  L K  G++V  V+    N+   SK + S    + +      
Sbjct: 2   KKLVLAYSGGLDTSYCAKHLSKDKGFEVHAVS---VNTGGFSKEEISQIEKKSLE----- 53

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +   S+   D  + F + V+              P  V   R V+  ++++  +++ 
Sbjct: 54  ---LGATSYKSIDAVQTFYDKVVKYLIFGNVLKNNTYPLSVSAERIVQAIEIVNYAKKVD 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 AKYIAHG 117


>gi|315425945|dbj|BAJ47595.1| transcription regulator ExsB related protein [Candidatus
           Caldiarchaeum subterraneum]
          Length = 213

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+V+   L+ +G+ ++ +TL  +             A + +  A   C+ I
Sbjct: 1   MALVSGGIDSTVMLWKLRSEGHSIVPLTLLTFRRNPREIE-----AAKKISKAASGCEPI 55

Query: 84  --NVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +VS    ++DY +  +  V   F S       P   +     + +S    V     A+
Sbjct: 56  VYDVSFLRELYDYPQHIKERVFQQFPSL------PNIVIPYRNIIFYSVAAYVACHEAAE 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A GH       + D G+         DLE+     L  +T      +  P+  + K  
Sbjct: 110 AIAGGHTREDMERIPDVGEEFF-----ADLEK----ILNKSTPFHRVKILTPVAGLWKPE 160

Query: 200 VRDLAREMGLDIADK 214
           +  L  E+G  I + 
Sbjct: 161 IMRLGVELGAPIGET 175


>gi|284165033|ref|YP_003403312.1| asparagine synthase [Haloterrigena turkmenica DSM 5511]
 gi|284014688|gb|ADB60639.1| asparagine synthase [Haloterrigena turkmenica DSM 5511]
          Length = 387

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 51/153 (33%), Gaps = 27/153 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  + VA SGGVDS++VA LL      V+G                      DV  AR  
Sbjct: 131 DREIAVAFSGGVDSALVAELL-DAPLYVVGF-----------------SDSHDVEAARTA 172

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-------PLPCVDCNRTVKFSDLLSV 132
            D +     V D E       +   A+  A G T        LP       V      ++
Sbjct: 173 ADAMGRELTVVDLEPADLERAVPRVAA--ATGRTNAMDVQIALPLYLVGERVAADGFDAL 230

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
               GAD L  G+    RL    D +  R   R
Sbjct: 231 AVGQGADELFGGYEKVVRLDHRVDAETTRAAVR 263


>gi|225552102|ref|ZP_03773042.1| NAD+ synthetase [Borrelia sp. SV1]
 gi|225371100|gb|EEH00530.1| NAD+ synthetase [Borrelia sp. SV1]
          Length = 512

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DSS+VA L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGIDSSLVAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--EVSSRFFERY 334


>gi|114777820|ref|ZP_01452751.1| hypothetical protein SPV1_00190 [Mariprofundus ferrooxydans PV-1]
 gi|114551811|gb|EAU54351.1| hypothetical protein SPV1_00190 [Mariprofundus ferrooxydans PV-1]
          Length = 392

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV  SGG+DS V A  + + G +V+ V L                  +D    R +   +
Sbjct: 181 VVLFSGGIDSPVAAYSMMKRGMEVVLVHLYNS------------TINRDFAKIRDLARQL 228

Query: 84  -----NVSHYVFDYEERFRNAVIVPFASSYAA 110
                 ++ ++ D  E F+   I    + Y  
Sbjct: 229 SLYQGRLTLHMIDL-EEFQRHAIAKVDAEYRM 259


>gi|189346066|ref|YP_001942595.1| NAD synthetase [Chlorobium limicola DSM 245]
 gi|189340213|gb|ACD89616.1| NAD+ synthetase [Chlorobium limicola DSM 245]
          Length = 283

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 46/191 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V + +SGG+DS+VV  L  R    G  V+GV +                + + +  A  +
Sbjct: 34  VAIGLSGGIDSAVVIELAVRAFGAG-QVLGVMM-----------PYRSSSPESLEHAELM 81

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + V   V D         +  F                 R+V   DLL         
Sbjct: 82  ISRLGVRSEVVDISPA-----VDAFV----------------RSVPEGDLLRR------- 113

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                   R+R+    D   R          + +    + T    +     P+GD+ K  
Sbjct: 114 ---GNIMARTRMVYLYDISARDCRLIIGTSNKTELLLGYGTLFGDMASAINPVGDLYKTQ 170

Query: 200 VRDLAREMGLD 210
           +R LAR +G+ 
Sbjct: 171 LRGLARHLGIP 181


>gi|322435346|ref|YP_004217558.1| NAD+ synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321163073|gb|ADW68778.1| NAD+ synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 570

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VAA+     G + V+GV +                +     DAR +
Sbjct: 314 KAVIGLSGGIDSALVAAIAVEALGAENVMGVGM-----------PSEYSSEGSKDDARVL 362

Query: 80  CDTINVSHYVFDYEERFR 97
            + + V   +    E + 
Sbjct: 363 AENLGVRFEMLAIHEGYE 380


>gi|242278556|ref|YP_002990685.1| asparagine synthase (glutamine-hydrolyzing) [Desulfovibrio
           salexigens DSM 2638]
 gi|242121450|gb|ACS79146.1| asparagine synthase (glutamine-hydrolyzing) [Desulfovibrio
           salexigens DSM 2638]
          Length = 623

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 12/66 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRVCDTI 83
             +SGGVDSS+V AL+   G           +    +   G      D    A +V   +
Sbjct: 257 ALLSGGVDSSLVVALMAEAG-----------SKSIDTFTIGFHEKKYDESGHAAKVAKHL 305

Query: 84  NVSHYV 89
            V+H+V
Sbjct: 306 GVNHHV 311


>gi|254486957|ref|ZP_05100162.1| argininosuccinate synthase [Roseobacter sp. GAI101]
 gi|214043826|gb|EEB84464.1| argininosuccinate synthase [Roseobacter sp. GAI101]
          Length = 406

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
             + +     Y+ D  E F    + P   + A  E          R +    L+ +  + 
Sbjct: 51  KAEMMGASEIYIEDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAAET 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADAVAHG 118


>gi|156935913|ref|YP_001439829.1| argininosuccinate synthase [Cronobacter sakazakii ATCC BAA-894]
 gi|166219966|sp|A7ML85|ASSY_ENTS8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|156534167|gb|ABU78993.1| hypothetical protein ESA_03807 [Cronobacter sakazakii ATCC BAA-894]
          Length = 405

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S +   LK   +G DV+   + +   R   K        + +     
Sbjct: 7   KKVVLAYSGGLDTSAIIPWLKENYEGCDVVACVVDIGQDRDDLKG----VEQKALRSGAS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            C       YV D  E F    + P          SY  G +        R +    L+ 
Sbjct: 63  EC-------YVVDAREEFIKDYVYPVLQTGALYEGSYLLGTSMA------RPLIAKALVD 109

Query: 132 VTRQLGADVLATG 144
           V +++GAD L  G
Sbjct: 110 VAKKVGADALCHG 122


>gi|86604930|ref|YP_473693.1| NAD+ synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86553472|gb|ABC98430.1| NAD+ synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 556

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS+V A +     G + V+GV +                +   + DA ++ 
Sbjct: 300 VLLGLSGGIDSAVTAVIAADALGPERVLGVLM-----------PSPYSSPGSLTDAYQLA 348

Query: 81  DTINVS---HYVFDYEERFRNAVIVPF 104
             + +      +    E +++ +  PF
Sbjct: 349 QNLGIPTLKLPIQSIMESYQHLLAEPF 375


>gi|329769610|ref|ZP_08261014.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           sanguinis M325]
 gi|328838365|gb|EGF87974.1| thiamine biosynthesis/tRNA modification protein ThiI [Gemella
           sanguinis M325]
          Length = 413

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RVC 80
           + ++ +SGG+DS V A  L+  G +V  +  Q       S    S  A Q ++D   ++ 
Sbjct: 180 KALLLLSGGIDSPVAAHALQVKGVEVEMIHFQ-------SPPFTSQEALQKIFDLTIKLS 232

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + +  +  +V ++ +  +  ++    S+Y    T        R         V  + G  
Sbjct: 233 EVVGKIKLHVVNFTKL-QTEIVKRIPSNYTMTST--------RRFMLRIAEEVAYKEGCL 283

Query: 140 VLATGHYI 147
            +ATG  +
Sbjct: 284 AIATGESL 291


>gi|260435594|ref|ZP_05789564.1| argininosuccinate synthase [Synechococcus sp. WH 8109]
 gi|260413468|gb|EEX06764.1| argininosuccinate synthase [Synechococcus sp. WH 8109]
          Length = 403

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 60/206 (29%), Gaps = 41/206 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R+
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVDEVITFAADLGQGDELEPIRQ 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALDAGASQSLVGDLIEPFIKDFAFPAIRANALYEGRYPLSTALARPLIAKRLVEVAREV 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL- 192
           GAD +A G                          +      F      L     +  P  
Sbjct: 112 GADAVAHG-----------------------CTGKGNDQVRFDVAIAALAPDLKVLTPAR 148

Query: 193 -GDMKKESVRDLAREMGLDIADKSDS 217
              M +E         GL       S
Sbjct: 149 EWGMSREETIAYGERFGLPAPVSKKS 174


>gi|227549907|ref|ZP_03979956.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078003|gb|EEI15966.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 517

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 58/192 (30%), Gaps = 24/192 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   +  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 217 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF-----VDHGLLRQGEREQVE--QD--F 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F + +                 +        S L   T     
Sbjct: 268 VAAT-GAKLVTVDEREAFLDKLAGVTEPEAKRKVIGAEFIRSFERAVSSVLSDHT----V 322

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 323 DYLVQGTLYPDVVESG--GGTGTANIKSHHN-------VGGLPDDVEFKLVEPLRLLFKD 373

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 374 EVRAVGRELGLP 385


>gi|114798657|ref|YP_761231.1| hypothetical protein HNE_2538 [Hyphomonas neptunium ATCC 15444]
 gi|114738831|gb|ABI76956.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 188

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+  AA+   +G    GV              G   A ++   A +VC  +
Sbjct: 10 VVLVSGGIDSAACAAMYANNGGSTTGVF----------VDYGHPAAIEEFASAEKVCAAL 59

Query: 84 NVSHYVFDYE 93
           +      + 
Sbjct: 60 GIPLLKTSFS 69


>gi|317486834|ref|ZP_07945649.1| arginosuccinate synthase [Bilophila wadsworthia 3_1_6]
 gi|316921910|gb|EFV43181.1| arginosuccinate synthase [Bilophila wadsworthia 3_1_6]
          Length = 402

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 26/139 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + +     +VV+A SGG+D+SV+   L+   G +VI  T+   +  +     G       
Sbjct: 1   MAQQRNIKKVVLAYSGGLDTSVILKWLQVNYGCEVI--TM-TADVGQEDDLNGVDEKALR 57

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVK 125
               +          Y+ D  E F    I P   S       Y  G +        R + 
Sbjct: 58  TGATKA---------YIEDLREEFAKDFIFPMLRSGALYEGRYLLGTSVA------RPLI 102

Query: 126 FSDLLSVTRQLGADVLATG 144
              L+ + R  GAD LA G
Sbjct: 103 TKRLVEIARAEGADALAHG 121


>gi|114769872|ref|ZP_01447482.1| argininosuccinate synthase [alpha proteobacterium HTCC2255]
 gi|114549577|gb|EAU52459.1| argininosuccinate synthase [alpha proteobacterium HTCC2255]
          Length = 406

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L    G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLEIEYGCEVVTFT-------------ADLGQGEELDPARK 50

Query: 79  VCDTINVSHY---VFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +      + D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKAENIFIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  Q+GAD +A G
Sbjct: 105 LVEIAAQVGADAVAHG 120


>gi|158320808|ref|YP_001513315.1| NAD+ synthetase [Alkaliphilus oremlandii OhILAs]
 gi|189030323|sp|A8MHN7|NADE_ALKOO RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|158141007|gb|ABW19319.1| NAD+ synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 250

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 50/231 (21%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           V +SGG+DS+VVA L+K+            +             + +DV       +   
Sbjct: 30  VGISGGIDSAVVACLIKKA-----------FPENSLGVILPIKSSTKDVEHGILTAEACG 78

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPL------PCVDCNRTVKFSDLLSVTRQLGA 138
           + +   D  E   N V                        +    ++ S L +V   L  
Sbjct: 79  IEYIEIDLGEEH-NTVANKVVHQLNNKNLFNTGMERAMDSNLRARLRMSTLYAVANNLNY 137

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            V+ T +                             Y  + T          P+  +KK 
Sbjct: 138 LVVGTDNAAEI-------------------------YTGYFTKYGDGGVDILPIASLKKY 172

Query: 199 SVRDLAREMGLD--IADKSDSQDIC-----FVQQGKYFDVVKRINAGIALE 242
            V + A+ +G+   + +K  S  +        + G  +  +     G A+ 
Sbjct: 173 EVYEWAKVLGVPKEVLEKEPSAGLWEGQTDEGEMGTSYKYIDEFLEGKAIP 223


>gi|157875044|ref|XP_001685929.1| thiamine biosynthesis-like protein [Leishmania major]
 gi|68129002|emb|CAJ06434.1| thiamine biosynthesis-like protein [Leishmania major strain
           Friedlin]
          Length = 795

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+  +SGG+DS V A  +   G  V GV      +  AS  + +          RR+
Sbjct: 223 DQRVLALISGGIDSPVAAYRMMTRGCLVSGVHFLNSTNDTASVVEKN----------RRI 272

Query: 80  CDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVKFSDLL 130
           C+ ++        + RF    +      S      P      NRT+ +   +
Sbjct: 273 CERLS------SLQGRFNMHYVDISTLQSQIVANVPN----HNRTLIYKWFM 314


>gi|260595986|ref|YP_003208557.1| argininosuccinate synthase [Cronobacter turicensis z3032]
 gi|260215163|emb|CBA26977.1| Argininosuccinate synthase [Cronobacter turicensis z3032]
          Length = 405

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S +   LK   +G DV+   + +   R   K        + +     
Sbjct: 7   KKVVLAYSGGLDTSAIIPWLKENYEGCDVVACVVDIGQDRDDLKG----VEQKALRSGAS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            C       YV D  E F    + P          SY  G +        R +    L+ 
Sbjct: 63  EC-------YVVDAREEFIKDYVYPVLQTGALYEGSYLLGTSMA------RPLIAKALVD 109

Query: 132 VTRQLGADVLATG 144
           V +++GAD L  G
Sbjct: 110 VAKKVGADALCHG 122


>gi|257467376|ref|ZP_05631687.1| NAD synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918506|ref|ZP_07914746.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692381|gb|EFS29216.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 259

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 50/200 (25%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           KN    +V++ +SGG+DS++VA L  +  G + VI + +                + + +
Sbjct: 17  KNAGFKKVILGLSGGIDSALVAYLAVKALGKENVIAIKM-----------PYKTSSQESI 65

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLL 130
             A  V   +++     +         I P   +Y   +T    +     +   + + L 
Sbjct: 66  DHANLVLQDLDLQEKTVE---------ITPMVDAYFENQTSASSLRRGNYMARTRMTVLF 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +             + + L +G   K   ++              + T    +     
Sbjct: 117 DQS------------ALENALVIGTSNKTEILL-------------GYGTLFGDMACSFN 151

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+GD+ K+ V  L+R MG+ 
Sbjct: 152 PIGDIYKKDVWSLSRYMGVP 171


>gi|18977660|ref|NP_579017.1| putative thiamin biosynthesis protein thiI [Pyrococcus furiosus DSM
           3638]
 gi|6066237|gb|AAF03222.1|AF156097_2 putative thiamine biosynthesis protein THII [Pyrococcus furiosus]
 gi|18893386|gb|AAL81412.1| putative thiamin biosynthesis protein thiI [Pyrococcus furiosus DSM
           3638]
          Length = 363

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
             +VV  +SGG+DS V A L+ + G +VI +  
Sbjct: 165 QGKVVALISGGIDSPVAAFLMLKRGAEVIALHF 197


>gi|57641733|ref|YP_184211.1| NAD synthetase [Thermococcus kodakarensis KOD1]
 gi|73921198|sp|Q5JJ65|NADE_PYRKO RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|57160057|dbj|BAD85987.1| NH3-dependent NAD+ synthetase [Thermococcus kodakarensis KOD1]
          Length = 254

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 61/197 (30%)

Query: 24  VVAMSGGVDS---------SVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           V+ +SGG+DS         +V        G + V+G+ +  Y +              DV
Sbjct: 30  VIGISGGIDSATAAYLAAKAV--------GTENVLGLIMPYYENN-------------DV 68

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            DA+ VC+++ + + V + +      ++  F S    G  P      N   +   +L   
Sbjct: 69  EDAKLVCESLGIDYEVINIKP-----IVESFVS--QLGFQPDKRSLGNIMSRTRMILLYA 121

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                + L  G   RS    G             D   D +                PL 
Sbjct: 122 HANQLNRLVLGTSNRSEFLTG------YFTKWG-DGASDYA----------------PLI 158

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K  V ++A+ +G+ 
Sbjct: 159 NLYKTEVWEIAKLLGVP 175


>gi|332179347|gb|AEE15036.1| protein of unknown function DUF814 [Thermodesulfobium narugense DSM
           14796]
          Length = 324

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++  SGG+DS V   +++    DVI +             K +    +     +    
Sbjct: 3   RALLLFSGGLDSLVAGRIIQDQNIDVIPI-------------KFTTPFFESDEKVKLYAR 49

Query: 82  TINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
              + + + FD  ++F   +  P    Y  G +  PC+DC++ +     + + +  GA  
Sbjct: 50  EAGLKNPIFFDITDQFFKILKNP---KYGFGRSLNPCIDCHKLMIEES-IKLLKHFGASF 105

Query: 141 LATGHYIRSRLYVGD 155
           + TG  +  R    +
Sbjct: 106 VITGEVVGERPMSQN 120


>gi|317151738|ref|YP_004119786.1| asparagine synthase [Desulfovibrio aespoeensis Aspo-2]
 gi|316941989|gb|ADU61040.1| asparagine synthase [Desulfovibrio aespoeensis Aspo-2]
          Length = 258

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 68/215 (31%), Gaps = 67/215 (31%)

Query: 24  VVAMSGGVDSSVV-----------AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           VVA+SGGVDS +V           A      G  V+ VT                 AG+D
Sbjct: 21  VVALSGGVDSGLVAAAAHAAGTGPA-----SGGRVVAVT-----------VCSELSAGRD 64

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V  A  V   I ++H           AV                C  C R + F  +   
Sbjct: 65  VERASAVARHIGLAHGTLTARLLENEAV---------RRNNADRCYHCKRAI-FDLMR-- 112

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            R+ G + L             DD   R  +         Q Y +F            PL
Sbjct: 113 -REFGQECLLVD------GTNADDDPARPGLRAA------QEYGVFH-----------PL 148

Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
            +  + K  VR+LAR +GL   D     + C   +
Sbjct: 149 KELAIPKVRVRELARGLGLPNWDTPS--ESCLATR 181


>gi|145294778|ref|YP_001137599.1| GMP synthase [Corynebacterium glutamicum R]
 gi|226738428|sp|A4QBV0|GUAA_CORGB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|140844698|dbj|BAF53697.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 523

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 20/193 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D R +  +SGGVDS+V  AL++R  G  +  V     +       +             
Sbjct: 218 EDGRAICGLSGGVDSAVAGALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF----- 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D  + F + +                 +          L        
Sbjct: 270 -VAAT-GAKLVTVDERQAFLSKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLEEAPEGST 327

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +          L  PL D+ K
Sbjct: 328 VDFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFKLVEPLRDLFK 378

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 379 DEVRAVGRELGLP 391


>gi|327401838|ref|YP_004342677.1| GMP synthase subunit B [Archaeoglobus veneficus SNP6]
 gi|327317346|gb|AEA47962.1| GMP synthase (glutamine-hydrolyzing) subunit B [Archaeoglobus
           veneficus SNP6]
          Length = 303

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 35/211 (16%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M V +       ++ +  KD + ++A+SGGVDSSV   L     Y  IG      +    
Sbjct: 1   MDVEKFVEQAIQEIREKVKDGKAIIALSGGVDSSVCTVLA----YKAIG------DRLIP 50

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVD 119
                      +    + +   +N      D ++ F  A           G T P     
Sbjct: 51  VFVDTGLMREGEPERVKEIFGHMN--LVFVDAKDEFFEA---------LKGVTDPEEKRK 99

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
               +       V  +  A+ L               G     +   M   +        
Sbjct: 100 IVGELFVRVFERVAEEYKAEYLI-------------QGTIYPDIIESMGGIKSHHNVGGF 146

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +  D+  PL ++ K+ VR++AR +GL 
Sbjct: 147 PLHYKFKDVIEPLRELYKDEVREVARYLGLP 177


>gi|149377360|ref|ZP_01895105.1| Predicted PP-loop superfamily ATPase [Marinobacter algicola
          DG893]
 gi|149358372|gb|EDM46849.1| Predicted PP-loop superfamily ATPase [Marinobacter algicola
          DG893]
          Length = 221

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          VVV  SGG+DS  +  L +  GY V  ++   ++  +   R+  C        AR+VC+ 
Sbjct: 5  VVVIYSGGMDSFTLLHLARARGYRVHALS---FDYGQRHVRELEC--------ARQVCEA 53

Query: 83 INVSHYVFDYEER 95
          ++V H V D    
Sbjct: 54 LSVPHKVIDIRAL 66


>gi|295694944|ref|YP_003588182.1| GMP synthase, large subunit [Bacillus tusciae DSM 2912]
 gi|295410546|gb|ADG05038.1| GMP synthase, large subunit [Bacillus tusciae DSM 2912]
          Length = 530

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 46/208 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   + +V+ A+SGGVDS+V A L+ R  G  +  V            RKG      
Sbjct: 228 EIRRQVGNGQVLCALSGGVDSAVAAVLVHRAVGDRLTCVF-----VDHGLLRKGE----- 277

Query: 72  DVYDARRVCDT----INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-- 125
               A RV +       +     D   RF   ++             +   +  R +   
Sbjct: 278 ----ADRVMEAFGRGFGMKIVRVDAGGRFLARLVG------------VRDPEQKRKIIGE 321

Query: 126 --FSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                      +LG  D LA G        + + G +     +           +    +
Sbjct: 322 EFIRVFEEEADRLGKFDFLAQG---TLYTDIIESGTKTAATIKSHHN-------VGGLPE 371

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +    L  PL  + K+ VR L  E+G+ 
Sbjct: 372 RMSFRLIEPLNTLFKDEVRALGTELGIP 399


>gi|218438301|ref|YP_002376630.1| exsB protein [Cyanothece sp. PCC 7424]
 gi|254764329|sp|B7K7J4|QUEC_CYAP7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|218171029|gb|ACK69762.1| exsB protein [Cyanothece sp. PCC 7424]
          Length = 230

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 23/202 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + V+ +SGG+DS+  AA+    GY+ I ++L                  +++  A+++
Sbjct: 3   QPKAVILLSGGLDSATTAAIALASGYEAIALSLFY-----------GQRHHKEIEAAQKI 51

Query: 80  CDTINVSHYV---FDYEERFRNAVIVPFASSYAAGETP--LPC--VDCNRTVKFSDLLSV 132
              + +  +     +  +   +A+         AG  P  +P   V    TV  +  LS+
Sbjct: 52  VQVLGIKEHYSLEVNLSQWGGSALTDQSIEVPKAGLNPHLIPITYVPGRNTVFIAIALSL 111

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
               GA  +  G  I +  Y G    R   +     L    S         QL     PL
Sbjct: 112 AEAKGAQAIYLG--INAIDYSGYPDCRPEYLEAFQKLANLSSKIGVEGKTIQL---IAPL 166

Query: 193 GDMKKESVRDLAREMGLDIADK 214
               K  +   A  +G+ IAD 
Sbjct: 167 VKDSKVDIVRRAVRLGVPIADT 188


>gi|120602947|ref|YP_967347.1| thiamine biosynthesis protein [Desulfovibrio vulgaris DP4]
 gi|120563176|gb|ABM28920.1| thiamine biosynthesis protein [Desulfovibrio vulgaris DP4]
          Length = 368

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 40/203 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V  +SGG+DS +   L++  G  V  +          S   G     +           +
Sbjct: 9   VALLSGGLDSILAVKLVEEQGLRVKCLHF-------VSPFFGKPSQVRRWRSIYA----L 57

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----GAD 139
           +++    D  + F   +       +  G+   PCVDC        +L   R+L    GA 
Sbjct: 58  DIT--TVDVSDDFARMLAER--PQHGFGKVMNPCVDCKI-----LMLRRARELMTEYGAT 108

Query: 140 VLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLE-RDQSYF--LFATTQQQLCD 187
            + TG  +  R              D + R ++ RP+  +  D + F       +++L  
Sbjct: 109 FIITGEVLGQRPMSQRRDTLNVIRRDAEVRDLLLRPLSAKLLDPTPFELSGMVDRERLLA 168

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +    G  +KE +  LA    L+
Sbjct: 169 IS---GRGRKEQM-ALAERFALE 187


>gi|19551841|ref|NP_599843.1| GMP synthase [Corynebacterium glutamicum ATCC 13032]
 gi|62389498|ref|YP_224900.1| GMP synthase [Corynebacterium glutamicum ATCC 13032]
 gi|24211741|sp|Q8NSR1|GUAA_CORGL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21323372|dbj|BAB98000.1| GMP synthase - PP-ATPase domain [Corynebacterium glutamicum ATCC
           13032]
 gi|41324832|emb|CAF19314.1| PUTATIVE GMP SYNTHASE [Corynebacterium glutamicum ATCC 13032]
          Length = 523

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 20/193 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D R +  +SGGVDS+V  AL++R  G  +  V     +       +             
Sbjct: 218 EDGRAICGLSGGVDSAVAGALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF----- 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D  + F + +                 +          L        
Sbjct: 270 -VAAT-GAKLVTVDERQAFLSKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLEEAPEGST 327

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +          L  PL D+ K
Sbjct: 328 VDFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFKLVEPLRDLFK 378

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 379 DEVRAVGRELGLP 391


>gi|307102713|gb|EFN50982.1| hypothetical protein CHLNCDRAFT_141632 [Chlorella variabilis]
          Length = 467

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 24/134 (17%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-A 76
           RV VA SGG DS+V+A ++    +R GY   G+ L L +  +     G      D  D  
Sbjct: 52  RVAVAASGGKDSTVLAHMMTTLNQRHGY---GLDLFLLSIDE-----GISGYRDDSLDTV 103

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +R      +  +VF Y++ +    + ++         G     C  C    +   L    
Sbjct: 104 KRNEAQYQIPLHVFSYKDLYGWTMDEIVR------EIGTRSN-CTFCGVFRR-QALDRGA 155

Query: 134 RQLGADVLATGHYI 147
             +GA  +ATGH  
Sbjct: 156 ALVGAHKIATGHNA 169


>gi|118575266|ref|YP_875009.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A]
 gi|118193787|gb|ABK76705.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A]
          Length = 269

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 20/135 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  RV V +SGG DS V+  +L    ++ G+++  VT+                  + + 
Sbjct: 4   RGDRVAVGVSGGKDSLVLLHILEQMSQKWGFELEAVTI---------DEGIPGYRDEALS 54

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSV 132
                C ++ V+H V+ Y++ F                       C+   T++   +   
Sbjct: 55  IVEEYCGSLGVAHRVYAYKDLF-----DMTLDEALNMRGENSQTSCSICGTLRRRAMDHA 109

Query: 133 TRQLGADVLATGHYI 147
               GADVLAT H +
Sbjct: 110 IHDTGADVLATAHNL 124


>gi|254294201|ref|YP_003060224.1| NAD+ synthetase [Hirschia baltica ATCC 49814]
 gi|254042732|gb|ACT59527.1| NAD+ synthetase [Hirschia baltica ATCC 49814]
          Length = 553

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G + V  V +                + + + DA++  
Sbjct: 289 VLIGLSGGIDSAMVAAIAVDALGPENVWCVMM-----------PSRYTSRESLLDAQQCA 337

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD--LLSVTRQLGA 138
           + + V +   + +            S    G TP    + N   +     L++++ + G 
Sbjct: 338 EALGVKYD--NIQISSAVNAYDEMLSEAFTGTTPDT-TEENIQSRVRGVTLMALSNKFG- 393

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
                 H + +     +       +   M                       PL D+ K 
Sbjct: 394 ------HMVTTTGNKSEMAVGYATLYGDMCGG------------------YNPLKDIYKT 429

Query: 199 SVRDLAREMGLDIADK 214
            V +LAR    ++   
Sbjct: 430 EVFELARWRNANVPKN 445


>gi|242280581|ref|YP_002992710.1| hypothetical protein Desal_3120 [Desulfovibrio salexigens DSM 2638]
 gi|242123475|gb|ACS81171.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 349

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 32/199 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +   SGG+DS +   +++  G  V+G+          +   G+    +   +        
Sbjct: 8   LALFSGGLDSILACKVIQDQGLKVLGLHF-------VTPFFGNPEKIEHWQEV------Y 54

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V     D  E++   ++      +  G+   PCVDC   +      ++ ++ GA  + +
Sbjct: 55  GVEIMPVDISEKYIQMMMD--VPEHGMGKLVNPCVDCKIMMISHAK-TLMKEFGAKFIIS 111

Query: 144 GHYIRSRLYVG---------DDGKRRRIMCRPMDLERDQSYFL---FATTQQQLCDLRFP 191
           G     R             +  +   I+ RP+         +       +++L +  F 
Sbjct: 112 GEVTGQRPMSQRPPVLNAIRNSSETGDILLRPLCAHSQPETAVEKSGLVDREKLPN-IF- 169

Query: 192 LGDMKKESVRDLAREMGLD 210
            G  +K  +  +A++ G  
Sbjct: 170 -GRGRKIQL-QMAKDYGFS 186


>gi|149928237|ref|ZP_01916481.1| argininosuccinate synthase [Limnobacter sp. MED105]
 gi|149823043|gb|EDM82284.1| argininosuccinate synthase [Limnobacter sp. MED105]
          Length = 409

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+   
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YGCEIVTF-----------TADLGQGEELEPARQKAL 53

Query: 82  TINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
              +     Y+ D  E F    + P           Y  G +    +   R      L+ 
Sbjct: 54  KFGIKPENIYIDDVREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LID 107

Query: 132 VTRQLGADVLATG 144
           + R+ GAD ++ G
Sbjct: 108 IARETGADAISHG 120


>gi|145596344|ref|YP_001160641.1| GMP synthase [Salinispora tropica CNB-440]
 gi|145305681|gb|ABP56263.1| GMP synthase (glutamine-hydrolyzing) [Salinispora tropica CNB-440]
          Length = 517

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 34/194 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ R  G  +  V     +       +              V  
Sbjct: 220 VICGLSGGVDSAVAAALVHRAVGDQLTCVF---VDHGLLRAGEAEQVEKDY------VAA 270

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           T  +   V D  ++F  A          AG T     +  R +   + +        D+ 
Sbjct: 271 T-GIKLRVVDAADQFLTA---------LAGVT---DPERKRKIIGREFIRTFEAAARDIA 317

Query: 142 ATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           A G             V + G             +   + +    +     L  PL  + 
Sbjct: 318 AHGDVEFLVQGTLYPDVVESGGG-----AGTASIKSH-HNVGGLPEDLGFSLVEPLRTLF 371

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  ++GL 
Sbjct: 372 KDEVRALGLQLGLP 385


>gi|322435726|ref|YP_004217938.1| GMP synthase, large subunit [Acidobacterium sp. MP5ACTX9]
 gi|321163453|gb|ADW69158.1| GMP synthase, large subunit [Acidobacterium sp. MP5ACTX9]
          Length = 527

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 30/194 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +  +SGGVDSSV A L+ R  G  +  + +     RK    K                + 
Sbjct: 226 ICGLSGGVDSSVAAVLVARAIGDRLTCIFVNNGVLRKDEFAKVHATMR----------EQ 275

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQ-LG 137
           + ++    D  +RF             AG T     +  R V   + +       ++   
Sbjct: 276 LGLNVVAVDAADRFLTK---------LAGVT---DPETKRKVIGGEFISVFDDEAKKIFE 323

Query: 138 ADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           A+  A        +  +  D      +  P    +   + +          L  PL D+ 
Sbjct: 324 AEKSAGEEIAWLVQGTLYPDVIESSSVKGPSQTIKSH-HNVGGLPADMKLKLIEPLRDLF 382

Query: 197 KESVRDLAREMGLD 210
           K+ VR + R++G+ 
Sbjct: 383 KDEVRRIGRDLGMP 396


>gi|229828920|ref|ZP_04454989.1| hypothetical protein GCWU000342_01005 [Shuttleworthia satelles DSM
           14600]
 gi|229792083|gb|EEP28197.1| hypothetical protein GCWU000342_01005 [Shuttleworthia satelles DSM
           14600]
          Length = 484

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 25/129 (19%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ V +SGG DS ++A L   L R G     +   L N     +                
Sbjct: 230 KIAVCISGGKDSMIMAKLFQELLRHGKQNFSLEFLLMNPGYNEENYRRITDN-------- 281

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLLSVTRQLG 137
               + +              V         AG E   PC  C   ++   L +  R+LG
Sbjct: 282 -ARLLGIPI-----------RVFESSIYDIVAGEEIENPCYLC-ARMRRGHLYAKARELG 328

Query: 138 ADVLATGHY 146
            + +A GH+
Sbjct: 329 CNKIALGHH 337


>gi|240146382|ref|ZP_04744983.1| argininosuccinate synthase [Roseburia intestinalis L1-82]
 gi|257201492|gb|EEU99776.1| argininosuccinate synthase [Roseburia intestinalis L1-82]
 gi|291535768|emb|CBL08880.1| argininosuccinate synthase [Roseburia intestinalis M50/1]
 gi|291538261|emb|CBL11372.1| argininosuccinate synthase [Roseburia intestinalis XB6B4]
          Length = 410

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 24/130 (18%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRDG-YDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYD 75
           +V++A SGG+D    A +  LK +  Y+VI   +      +     +R  SC A      
Sbjct: 4   KVILAYSGGLD--TTAIIPWLKENYDYEVICCCIDCGQEEELDGLEERAISCGAS----- 56

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
                       Y+ D  + F +  I+P   + A  E          R +    L+ + R
Sbjct: 57  ----------KLYIVDIIDEFCDDYIMPCVQANAIYENKYLLGTSMARPLIAKKLVEIAR 106

Query: 135 QLGADVLATG 144
           + GA  +  G
Sbjct: 107 KEGATAICHG 116


>gi|261855295|ref|YP_003262578.1| argininosuccinate synthase [Halothiobacillus neapolitanus c2]
 gi|261835764|gb|ACX95531.1| argininosuccinate synthase [Halothiobacillus neapolitanus c2]
          Length = 408

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 28/140 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +    +  +VV+A SGG+D+SV+   L+   G +V+  T                  G +
Sbjct: 1   MTTQSEFKKVVLAYSGGLDTSVILKWLEDTYGCEVVTFT-------------ADLGQGDE 47

Query: 73  VYDARRVCDTINVS-HYVFDYEERF-RNAVIVPFAS------SYAAGETPLPCVDCNRTV 124
           +  AR     + V   ++ D  E F R+ V   F +       Y  G +    +   R  
Sbjct: 48  LEPARIKAQKMGVKQIFIEDLREEFIRDYVFPMFRANAVYEGEYLLGTSIARPLIAKR-- 105

Query: 125 KFSDLLSVTRQLGADVLATG 144
               L+ +  Q GAD +A G
Sbjct: 106 ----LVDIANQTGADAIAHG 121


>gi|146087041|ref|XP_001465707.1| argininosuccinate synthase [Leishmania infantum JPCM5]
 gi|134069807|emb|CAM68133.1| putative argininosuccinate synthase [Leishmania infantum JPCM5]
 gi|322499155|emb|CBZ34226.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 418

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  RVV+A SGG+D+SV+   LK +  Y+VI           A+  +G+         A+
Sbjct: 12  KKPRVVLAYSGGLDTSVIIPWLKENYDYEVIAC--------CANVGQGAGEIDGLEEKAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQL 136
           +   +     Y+ D  E +    I P   + A  E        + R +    L+ V  + 
Sbjct: 64  KSGAS---KLYLLDLREEYVTDYIFPTLKAGATYEGKYMLGTSHARPLIAKHLVEVAHKE 120

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 121 GAVAICHG 128


>gi|154276466|ref|XP_001539078.1| hypothetical protein HCAG_06683 [Ajellomyces capsulatus NAm1]
 gi|150414151|gb|EDN09516.1| hypothetical protein HCAG_06683 [Ajellomyces capsulatus NAm1]
          Length = 410

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 37/148 (25%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P   +V +A SGG+D+S +   L   GYDV+                      +D  +A 
Sbjct: 2   PAKQKVCLAYSGGLDTSCILTWLIEQGYDVVCF-------------LADVGQAEDFKEAE 48

Query: 78  RVCDTIN-VSHYVFDYEERFRNAVI------------VPFASSYAAG-ETPLPCVDC--- 120
           R   +I  +   V D +  F   +                   +  G  T  P   C   
Sbjct: 49  RKALSIGALKLVVADLKREFVEELCYRAIQCNAIWEDRYLLGLHRKGVRTIAPLTSCLNE 108

Query: 121 ------NRTVKFSDLLSVTRQLGADVLA 142
                 N  V+F +L     Q    V+A
Sbjct: 109 NSLSNSNDQVRF-ELAFYAIQPSIQVIA 135


>gi|149201961|ref|ZP_01878935.1| NAD synthetase [Roseovarius sp. TM1035]
 gi|149145009|gb|EDM33038.1| NAD synthetase [Roseovarius sp. TM1035]
          Length = 555

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDS++VA +     G + +   +                + + + DA+ V 
Sbjct: 286 KVLLGLSGGVDSAIVATIAVDAVGAENVRCVM----------LPSEYTSAESLEDAKAVA 335

Query: 81  DTINVSHYVF 90
           + +   +   
Sbjct: 336 ENLGCRYDFV 345


>gi|258648364|ref|ZP_05735833.1| GMP synthase [Prevotella tannerae ATCC 51259]
 gi|260851533|gb|EEX71402.1| GMP synthase [Prevotella tannerae ATCC 51259]
          Length = 517

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 43/199 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL +  G ++  +     +     K +        + D   
Sbjct: 213 NDKVILGLSGGVDSSVCATLLNKAIGKNLTCIF---VDHGMLRKNE----YANVLKDY-- 263

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             + + ++    +  E+F N           AG T     +  R +     + V     R
Sbjct: 264 --EGLGLNVLGVNAGEKFFND---------LAGVT---DPEKKRKIIGKGFIDVFEEEAR 309

Query: 135 QL-GADVLATG--HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           ++  A  LA G  +  R           +                +    ++    L  P
Sbjct: 310 KITDAKWLAQGTIYPDRIESLNITGKTIKSHHN------------VGGLPEELNLQLCEP 357

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR +  E+G+ 
Sbjct: 358 LEWLFKDEVRRVGYELGMP 376


>gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
 gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
          Length = 417

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 105/355 (29%), Gaps = 63/355 (17%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIG-----VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +A+SGG DS  +  LL    +D  G     +     +            A          
Sbjct: 26  IALSGGGDSMALMHLL----HDCFGSGEVQLFAATVDHGLRPGSADEAAAAGAAA----- 76

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + + H V  + +R ++       +   A               +  L    RQ G  
Sbjct: 77  -ARLGIPHEVLHWADRPQD---GNLQAQARAAR-------------YELLCGWARQHGIP 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           VLA GH    +            M R        S      T + +  L  PL D+ +  
Sbjct: 120 VLALGHTADDQAE-----TVLMRMARASG-VTGLSGMAARRTHKGVT-LLRPLLDVTRSE 172

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259
           +R      G+D A+   ++D  F ++ +    ++ +         +  +   +      +
Sbjct: 173 LRRYLEARGVDWAEDPSNEDTRF-ERVRVRKALEHLAPLGLTPEVLASVARNMSKAREAL 231

Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-----ESLEVHRIYLREINWLGDG 314
             Y     R L                +  V++  R          HR+ +R + W+   
Sbjct: 232 DWYVFLAARDLA------------HVQAGAVVLCQRKFRTLPVEISHRLLVRAVQWVSGA 279

Query: 315 LFEDAVVDGFKC--FVKIRSSQDPVPVFVQRNDDGVYV--DFEKSEVGVA--SGQ 363
            +    V   K     +  SS       +      V+V  ++  +  GV    GQ
Sbjct: 280 AYPPRRVPMEKAVQAARNGSSATLAGCHLVSTAKQVWVCREYN-AVNGVTALPGQ 333


>gi|154151526|ref|YP_001405144.1| hypothetical protein Mboo_1987 [Candidatus Methanoregula boonei
           6A8]
 gi|154000078|gb|ABS56501.1| thiamine biosynthesis protein [Methanoregula boonei 6A8]
          Length = 213

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 34/200 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V  +SGG+DS V A L+   G ++I V +   ++R  +  K    A   +   + +  
Sbjct: 3   KLVSLISGGIDSPVAAYLMLHQGVEIIAVHM---DNRPFTDEKNLHKAMNLIRHLQHLTQ 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +  YV  +             +     E  L C+ C R + +     +  + GA  +
Sbjct: 60  R-PIKTYVVPHGPNH--------IAFARNCERHLHCLFC-RRMMYRIAERIAEKEGAVGI 109

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG  +                         Q+  +     +    +  PL  M K  + 
Sbjct: 110 LTGESLGQVASQTL-----------------QNLMVENLVIRIP--VVRPLIGMDKVEII 150

Query: 202 DLAREMGLDIADKSDSQDIC 221
           D+AR +G    + S    +C
Sbjct: 151 DIARRIG--TYEISTLPGLC 168


>gi|259418011|ref|ZP_05741930.1| argininosuccinate synthase [Silicibacter sp. TrichCH4B]
 gi|259346917|gb|EEW58731.1| argininosuccinate synthase [Silicibacter sp. TrichCH4B]
          Length = 407

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKPENIFIEDIREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD ++ G
Sbjct: 105 LVEIAEASGADAVSHG 120


>gi|254788130|ref|YP_003075559.1| asparagine synthase family protein [Teredinibacter turnerae T7901]
 gi|237683896|gb|ACR11160.1| asparagine synthase family protein [Teredinibacter turnerae T7901]
          Length = 432

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V VA+SGG+DSS +A   KR   + I VTL L  S  A K             A+++   
Sbjct: 164 VFVALSGGLDSSTMAHYAKRFCANPIAVTLDLGGSEDAEK-------------AQKIAAQ 210

Query: 83  INVSHYVFDYEER 95
           + + H VF   E 
Sbjct: 211 LAIRHCVFGVSED 223


>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039911|gb|ACT56707.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 404

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +VI V +                 G+++  A   
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIA------------DLGQGEELKIASDK 52

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +     YV D    F    + P   + A  E          R +    L+ +  + G
Sbjct: 53  ARLLGAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETG 112

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 113 ADAIAHG 119


>gi|254442762|ref|ZP_05056238.1| argininosuccinate synthase [Verrucomicrobiae bacterium DG1235]
 gi|198257070|gb|EDY81378.1| argininosuccinate synthase [Verrucomicrobiae bacterium DG1235]
          Length = 409

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 24/131 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+A SGG+D+SV+   LK   Y+   +T     +    + +      +    A+   
Sbjct: 1   MKIVLAYSGGLDTSVLVRWLKDH-YNAEIITFA---ADVGQEEELDGLEEK----AKATG 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +   +HY  D ++ F    I P           Y  G +    +     +       + 
Sbjct: 53  AS---AHYTLDLKDEFAKDYIFPMLRANTIYEGQYYLGTSIARPLIAKAHI------DLA 103

Query: 134 RQLGADVLATG 144
           R++GAD +A G
Sbjct: 104 RKVGADAVAHG 114


>gi|332178436|gb|AEE14125.1| Argininosuccinate synthase [Thermodesulfobium narugense DSM 14796]
          Length = 400

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 101/337 (29%), Gaps = 63/337 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             +VV+A SGG+D+SV    L+   YD  VI +T+ +    +             V  AR
Sbjct: 2   KKKVVLAYSGGLDTSVAIKWLQEK-YDSEVITLTVDIGQGEE---------IEPIVEKAR 51

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
            V     +     D    F          +    E         +R +  S L+ + ++ 
Sbjct: 52  NVGA---IKAIALDLRREFLTDYAFKALRANCTYEYNYHLSAALSRPLIASYLVKLAKEN 108

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGD- 194
            A  ++ G   +                       DQ  F       +     + P+ + 
Sbjct: 109 NASAVSHGCTAK---------------------GNDQVRFDLTIKTLKEDLAIWAPMREW 147

Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
            M +E   D A+   + +           V +   F +   +       G I  +  +  
Sbjct: 148 VMTREEEIDYAQRNNIPVP----------VGKKSPFSIDLNLWGRSIEAGPIEDIEKEPP 197

Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313
                              A   P +V  ++  ++ V VG   +       +  +N +  
Sbjct: 198 EE-------AFQLVVSPEKAPDRPEYV-EIEFENN-VPVGLNSNRMNPEDLVERLNKIAG 248

Query: 314 --GLFEDAVVDGFKCFVKIR--SSQDPVPVFVQRNDD 346
             G+    +V+     +K R         V V+ + D
Sbjct: 249 SHGVGRSDMVENRLVGIKTREVYEAPAATVLVKAHRD 285


>gi|289525255|emb|CBJ14731.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
 gi|296434803|gb|ADH16981.1| hypothetical protein E150_01125 [Chlamydia trachomatis E/150]
 gi|296435732|gb|ADH17906.1| hypothetical protein G9768_01115 [Chlamydia trachomatis G/9768]
 gi|296436656|gb|ADH18826.1| hypothetical protein G11222_01110 [Chlamydia trachomatis G/11222]
 gi|296437592|gb|ADH19753.1| hypothetical protein G11074_01115 [Chlamydia trachomatis G/11074]
 gi|296438523|gb|ADH20676.1| hypothetical protein E11023_01115 [Chlamydia trachomatis E/11023]
 gi|297140091|gb|ADH96849.1| hypothetical protein CTG9301_01115 [Chlamydia trachomatis G/9301]
          Length = 254

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 33  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 86  YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 128 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPIVDMVNFGITI----LRPLIFIPE 183

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A+E G  
Sbjct: 184 DL----IRKFAKESGFA 196


>gi|255311017|ref|ZP_05353587.1| hypothetical protein Ctra62_01120 [Chlamydia trachomatis 6276]
 gi|255317318|ref|ZP_05358564.1| hypothetical protein Ctra6_01115 [Chlamydia trachomatis 6276s]
 gi|255506792|ref|ZP_05382431.1| hypothetical protein CtraD_01130 [Chlamydia trachomatis D(s)2923]
 gi|297748347|gb|ADI50893.1| TtcA [Chlamydia trachomatis D-EC]
 gi|297749227|gb|ADI51905.1| TtcA [Chlamydia trachomatis D-LC]
          Length = 283

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 62  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 114

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 115 YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 156

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 157 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPIVDMVNFGITI----LRPLIFIPE 212

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A+E G  
Sbjct: 213 DL----IRKFAKESGFA 225


>gi|15604937|ref|NP_219721.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328625|gb|AAC67809.1| PP-Loop Superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
          Length = 234

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 13  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 65

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 66  YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 107

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 108 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPIVDMVNFGITI----LRPLIFIPE 163

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A+E G  
Sbjct: 164 DL----IRKFAKESGFA 176


>gi|222444394|ref|ZP_03606909.1| hypothetical protein METSMIALI_00005 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433959|gb|EEE41124.1| hypothetical protein METSMIALI_00005 [Methanobrevibacter smithii
           DSM 2375]
          Length = 312

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 44/196 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + ++A+SGGVDSSV + L++   G ++I + +     R+    + +            
Sbjct: 25  DEKAIIALSGGVDSSVCSVLVQEAIGDNLIAIFVDHGLLREGEVEEVTNTFK-------- 76

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             D +N ++   D  E F                  +   +  R +     + V      
Sbjct: 77  --DRLNFNY--VDASEEF------------LNALEGVEDPEEKRKIIGKVFIDVFEREAE 120

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +  A  L  G      +      K    +                     + +L  P+ D
Sbjct: 121 KTDAKYLVQGTIAPDWIESKGKIKSHHNLA---------------LPSGMVLELVEPIRD 165

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++   + L 
Sbjct: 166 LYKDEVREIGLLLDLP 181


>gi|148642405|ref|YP_001272918.1| GMP synthase subunit B [Methanobrevibacter smithii ATCC 35061]
 gi|261351056|ref|ZP_05976473.1| GMP synthase [Methanobrevibacter smithii DSM 2374]
 gi|148551422|gb|ABQ86550.1| GMP synthase (glutamine-hydrolysing), PP-ATPase domain/subunit,
           GuaA [Methanobrevibacter smithii ATCC 35061]
 gi|288860396|gb|EFC92694.1| GMP synthase [Methanobrevibacter smithii DSM 2374]
          Length = 308

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 44/196 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + ++A+SGGVDSSV + L++   G ++I + +     R+    + +            
Sbjct: 21  DEKAIIALSGGVDSSVCSVLVQEAIGDNLIAIFVDHGLLREGEVEEVTNTFK-------- 72

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             D +N ++   D  E F                  +   +  R +     + V      
Sbjct: 73  --DRLNFNY--VDASEEF------------LNALEGVEDPEEKRKIIGKVFIDVFEREAE 116

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +  A  L  G      +      K    +                     + +L  P+ D
Sbjct: 117 KTDAKYLVQGTIAPDWIESKGKIKSHHNLA---------------LPSGMVLELVEPIRD 161

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR++   + L 
Sbjct: 162 LYKDEVREIGLLLDLP 177


>gi|313679741|ref|YP_004057480.1| gmp synthase (glutamine-hydrolyzing) [Oceanithermus profundus DSM
           14977]
 gi|313152456|gb|ADR36307.1| GMP synthase (glutamine-hydrolyzing) [Oceanithermus profundus DSM
           14977]
          Length = 504

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++A+SGGVDSS +A LL R G D   V                     +  +  R   
Sbjct: 212 RVLLAVSGGVDSSTLALLLARAGVDHTAVF-----------VDHGLLRLGEREEVERALA 260

Query: 82  TINVSHYVFDYEERF 96
           +  V+    D  ERF
Sbjct: 261 SAGVNLVTVDARERF 275


>gi|254295358|ref|YP_003061381.1| argininosuccinate synthase [Hirschia baltica ATCC 49814]
 gi|254043889|gb|ACT60684.1| argininosuccinate synthase [Hirschia baltica ATCC 49814]
          Length = 414

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 60/222 (27%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           + L  NP   +VV+A SGG+D+S++   L+   G +V+  T                  G
Sbjct: 1   MSLVTNP-PKKVVLAYSGGLDTSIILKWLQTEFGCEVVTFT-------------ADLGQG 46

Query: 71  QDVYDARRVCDTINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDC 120
           +++  AR     + +        D  E F    + P   +       Y  G +    +  
Sbjct: 47  EELGPARDKALQLGIKEENIFIDDLREDFVRDYVFPMFRANTVYEGVYLLGTSIARPLIS 106

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---L 177
            R +       +   +GAD +  G                           DQ  F    
Sbjct: 107 KRQI------EIAEMVGADAVCHG---------------------ATGKGNDQVRFELGY 139

Query: 178 FATTQQQLCDLRFPLGDMK-KESV--RDLAREMGLDIADKSD 216
           +A        +  P  D + K      + A + G+ +     
Sbjct: 140 YALNPDI--RVIAPWRDWEFKSRTHLLEFAEKHGIPVPMDKR 179


>gi|222480627|ref|YP_002566864.1| hypothetical protein Hlac_2217 [Halorubrum lacusprofundi ATCC
          49239]
 gi|222453529|gb|ACM57794.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
          49239]
          Length = 197

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 14/72 (19%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M + +  SGG DSS+ A LL    YDV  VT             GS     D   A R  
Sbjct: 1  MELALLYSGGKDSSLAAHLL-DRFYDVRCVT-------------GSFGLTDDWKHAERAA 46

Query: 81 DTINVSHYVFDY 92
            +       + 
Sbjct: 47 AELGFPFERVEL 58


>gi|99082723|ref|YP_614877.1| argininosuccinate synthase [Ruegeria sp. TM1040]
 gi|119361324|sp|Q1GCK1|ASSY_SILST RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|99039003|gb|ABF65615.1| argininosuccinate synthase [Ruegeria sp. TM1040]
          Length = 407

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSD 128
             + + +     ++ D  E F    + P   +       Y  G +    +   R      
Sbjct: 51  KAELLGIKPENIFIEDIREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------ 104

Query: 129 LLSVTRQLGADVLATG 144
           L+ +    GAD ++ G
Sbjct: 105 LVEIAEATGADAVSHG 120


>gi|222475017|ref|YP_002563432.1| NH3-dependent NAD+ synthetase protein (nadE) [Anaplasma marginale
           str. Florida]
 gi|255004123|ref|ZP_05278924.1| NH3-dependent NAD+ synthetase protein (nadE) [Anaplasma marginale
           str. Virginia]
 gi|222419153|gb|ACM49176.1| NH3-dependent NAD+ synthetase protein (nadE) [Anaplasma marginale
           str. Florida]
          Length = 506

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ MSGG+DS++VA +     G   +   +                    V DA +   
Sbjct: 260 VVLGMSGGIDSALVATIATDALGPQCVHTFM----------LPTRYTTPSSVEDAAKCAL 309

Query: 82  TINVSHYVFDYEERFR 97
            +  SH V   EE +R
Sbjct: 310 NLGTSHTVMSIEEIYR 325


>gi|56416653|ref|YP_153727.1| NH3-dependent NAD+ synthetase protein [Anaplasma marginale str. St.
           Maries]
 gi|56387885|gb|AAV86472.1| NH3-dependent NAD+ synthetase protein [Anaplasma marginale str. St.
           Maries]
          Length = 506

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ MSGG+DS++VA +     G   +   +                    V DA +   
Sbjct: 260 VVLGMSGGIDSALVATIATDALGPQCVHTFM----------LPTRYTTPSSVEDAAKCAL 309

Query: 82  TINVSHYVFDYEERFR 97
            +  SH V   EE +R
Sbjct: 310 NLGTSHTVMSIEEIYR 325


>gi|262306019|gb|ACY45602.1| gln amidotransferase [Ctenolepisma lineata]
          Length = 197

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQL 54
          + +V++ +SGGVDS+V AALL +   +  VI V +  
Sbjct: 43 NNKVLLLISGGVDSTVCAALLHKALREDQVIAVHIDN 79


>gi|225572140|ref|ZP_03781004.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040406|gb|EEG50652.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DA 76
           K  ++ V +SGG DS  +   L   G        + Y +    +         D +    
Sbjct: 22  KGDKIAVGISGGKDSLTLLYAL--AGLR------RFYPNPFELEAITVDMGFGDFHTDKI 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +++CD + V + V          +      S        PC  C +  K   L  V ++L
Sbjct: 74  QQLCDKLEVPYTVVP--TEISKIIFQDRKES-------NPCSLCAKMRK-GALNEVAKKL 123

Query: 137 GADVLATGHY 146
             + +A  H+
Sbjct: 124 NCNKIAYAHH 133


>gi|323484330|ref|ZP_08089697.1| argininosuccinate synthase [Clostridium symbiosum WAL-14163]
 gi|323402324|gb|EGA94655.1| argininosuccinate synthase [Clostridium symbiosum WAL-14163]
          Length = 416

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 25/134 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            K  ++V+A SGG+D+SV+   LK + G +V+ V         A   +G+   G +    
Sbjct: 3   KKYNKIVLAYSGGLDTSVLIPWLKENYGCEVVAV--------SADVGQGAELIGLEEKAL 54

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLL 130
           +     +    Y+ D ++ F +  I+P          Y  G +    +   R V      
Sbjct: 55  KTGASKL----YIEDLKKEFVDEYIIPTMKAGAAYEHYLLGTSFARPIIAKRIV------ 104

Query: 131 SVTRQLGADVLATG 144
            + ++ GAD +  G
Sbjct: 105 EIAKKEGADAICHG 118


>gi|289192452|ref|YP_003458393.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938902|gb|ADC69657.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus sp.
           FS406-22]
          Length = 300

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           KD +++VA+SGG D    A +LK+ GY++  +       +  S+          +     
Sbjct: 47  KDEKILVAVSGGKDGHAAAWVLKKLGYNIE-LFHINLGIKGFSEES--------LKAVNE 97

Query: 79  VCDTINVSHYVFDYEE 94
           + + + V  +V + ++
Sbjct: 98  LAEKLEVPLHVVNLKD 113


>gi|148642677|ref|YP_001273190.1| thiamine biosynthesis ATP pyrophosphatase, ThiI [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445826|ref|ZP_03608341.1| hypothetical protein METSMIALI_01470 [Methanobrevibacter smithii
           DSM 2375]
 gi|229558682|sp|A5UKU4|THII_METS3 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|148551694|gb|ABQ86822.1| thiamine biosynthesis ATP pyrophosphatase, ThiI [Methanobrevibacter
           smithii ATCC 35061]
 gi|222435391|gb|EEE42556.1| hypothetical protein METSMIALI_01470 [Methanobrevibacter smithii
           DSM 2375]
          Length = 381

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
             +VVV +S G+DS V A L+ + G +VI + 
Sbjct: 175 QGKVVVLVSSGIDSPVAAYLMMKRGCEVIALH 206


>gi|262306105|gb|ACY45645.1| gln amidotransferase [Skogsbergia lerneri]
          Length = 197

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL++      VI V +          RKG     +      
Sbjct: 43  NNKVLMLVSGGVDSTVCAALLQKALRSDQVIAVHINN-----GFMRKGETSQVEQSL--- 94

Query: 78  RVCDTINVSHYVFDYEERFRN 98
                + V   V      F +
Sbjct: 95  ---VRVGVKLKVVHAAHDFYD 112


>gi|85375490|ref|YP_459552.1| putative LPS biosynthesis protein WbpG [Erythrobacter litoralis
           HTCC2594]
 gi|84788573|gb|ABC64755.1| putative LPS biosynthesis protein WbpG [Erythrobacter litoralis
           HTCC2594]
          Length = 386

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGG DSS VA   K  G   + V L   +N+  A            V +   +   
Sbjct: 71  IMGVSGGADSSYVAIRAKELGLRPLAVHLDNGWNTDTA------------VSNIELLLRE 118

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +++    +V D+ E F++     F +S      P   V  +  +  + L     +     
Sbjct: 119 LDIDLFTHVMDW-EEFKDIQRSLFLASV-----PNIEVATDHAI-TALLFHKAAEHNVRY 171

Query: 141 LATG 144
           L +G
Sbjct: 172 LLSG 175


>gi|116751037|ref|YP_847724.1| ExsB family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700101|gb|ABK19289.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 320

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 42/193 (21%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC---DT 82
           A+SGGVDSS V  L    G+  +G  L+         R+G          A +V      
Sbjct: 35  ALSGGVDSSTVTLL----GHRALGNRLRTVFIENGLMREGE---------AAQVAGWFRE 81

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + V+  V +  + F  A   +  P     A  +T    V       F     + ++ GA 
Sbjct: 82  LGVTVDVVEARDEFFAALAGIADPEEKREAITQTFYRDV-------FG---RIVKESGAR 131

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            L  G  +          KR+  +     +D    Q  F +         +  PL +++K
Sbjct: 132 YLLQGTILTDIDETIAGIKRQHNVFEQLGIDP---QDAFGY--------RIIEPLIELRK 180

Query: 198 ESVRDLAREMGLD 210
           + VR + + +GL 
Sbjct: 181 DGVRAVGKALGLP 193


>gi|310640237|ref|YP_003944995.1| nh(3)-dependent nad(+) synthetase [Paenibacillus polymyxa SC2]
 gi|309245187|gb|ADO54754.1| NH(3)-dependent NAD(+) synthetase [Paenibacillus polymyxa SC2]
          Length = 269

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 63/204 (30%), Gaps = 53/204 (25%)

Query: 24  VVAMSGGVDSSVVAALLK--------RDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++A+SGG+DS+V AAL K          G  Y  +GV                    +D+
Sbjct: 43  LIAISGGIDSAVAAALCKQATDELTQEQGQEYKTLGVF-------------QPYGQQEDI 89

Query: 74  YDARRVCDTINVSH--YVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             +  V    N+ +       E     AV +           +  P V  N   +   ++
Sbjct: 90  EHSYAVAKAFNLKYAGETNIKEAVDTIAVEVEHTLKDIGLERSITPQVRGNVKARTRMVV 149

Query: 131 SVTR--QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 +L   V+ T H   +       G   +     +D                    
Sbjct: 150 QYALANELNLLVVGTDHASEAIT-----GFYTKWGDGAVD-------------------- 184

Query: 189 RFPLGDMKKESVRDLAREMGLDIA 212
             PL  + K  VR LA  +G+  A
Sbjct: 185 ITPLSTLNKRQVRLLASYLGVPQA 208


>gi|298530668|ref|ZP_07018070.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510042|gb|EFI33946.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 351

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 20/133 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +   SGG+DS +    ++  G  V+G+          S   G+    +            
Sbjct: 12  LALFSGGLDSILSIKTIQEQGLKVLGLHF-------CSPFFGNPQKLEHWE------KVY 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQLGADVL 141
            +     D    +   +       +  G+   PC+DC   +  K  DLL    + GA+ +
Sbjct: 59  GLDLLALDVSREYVQMLCS--GPEFGLGKLLNPCIDCKIFMLQKTRDLLD---KYGAEFV 113

Query: 142 ATGHYIRSRLYVG 154
            +G  +  R    
Sbjct: 114 ISGEVLGQRPMSQ 126


>gi|37675878|ref|NP_936274.1| argininosuccinate synthase [Vibrio vulnificus YJ016]
 gi|37200418|dbj|BAC96244.1| argininosuccinate synthase [Vibrio vulnificus YJ016]
          Length = 404

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 17/173 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   V+   SGG+DSS +  +LK     V  V + L +  + SK              + 
Sbjct: 16  QAKHVLTLFSGGLDSSYLLEILKNSRAKVTAVAIDLGDDIEESKL-------------KL 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           + D       + D ++ F    +     + A      P     +R +     + + + LG
Sbjct: 63  ITDHYGFDLKILDAKQEFVEHSLFSAIQAQALYLGDYPVSSSLSRPIIVKKAVELAQILG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            D +              +G   R   +         Y   A ++++     F
Sbjct: 123 CDAIIHTANQSQNSLRRLNGAIERSGYQGFYGS---PYEYSAISREEKAQTLF 172


>gi|255264468|ref|ZP_05343810.1| argininosuccinate synthase [Thalassiobium sp. R2A62]
 gi|255106803|gb|EET49477.1| argininosuccinate synthase [Thalassiobium sp. R2A62]
          Length = 405

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +  S  Y+ D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAELMGASDIYIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LV 104

Query: 131 SVTRQLGADVLATG 144
            +  + GAD +A G
Sbjct: 105 EIAEETGADAVAHG 118


>gi|319956881|ref|YP_004168144.1| argininosuccinate synthase [Nitratifractor salsuginis DSM 16511]
 gi|319419285|gb|ADV46395.1| argininosuccinate synthase [Nitratifractor salsuginis DSM 16511]
          Length = 443

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+A SGG+D+S++   L+ + G +V+  T                  G++V  AR+ 
Sbjct: 7   KKAVLAYSGGLDTSIILKWLQDEYGCEVVTFT-------------ADLGQGEEVEPARQK 53

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
              + +     ++ D  E F    + P           Y  G +    +   + +     
Sbjct: 54  ALQLGIKPENIFIEDLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLIAKKQI----- 108

Query: 130 LSVTRQLGADVLATG 144
             +  + GAD +A G
Sbjct: 109 -EIAHKTGADAVAHG 122


>gi|319778153|ref|YP_004134583.1| nad+ synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171872|gb|ADV15409.1| NAD+ synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 335

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 84/235 (35%), Gaps = 42/235 (17%)

Query: 13  DLDKNPKDMR---VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSC 67
            L +  + MR   +V+ +SGG+DSSV  AL  R  G  +V  + +   +S   S R G  
Sbjct: 31  GLREQLRGMRKRGLVLGLSGGIDSSVSVALAARAVGAKNVFCLFMPESDSDPDSLRLGRL 90

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN------ 121
            A     +A  + + I  + +     +R R+  I      Y  G      +  +      
Sbjct: 91  AAETFGVEA--IVEDIGPTLHAMGCYQR-RDTFIRELVPEYGPGWASKIVIANSLAGEGY 147

Query: 122 ------------RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRP 166
                       R  K    +S    LG    AT    R+R    Y   D     ++  P
Sbjct: 148 NISSLVVQDPEGRQTKLR--MSAAVYLGIVA-ATNMKQRTRKQIEYYHADRLNFAVLGTP 204

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221
             LE DQ +F+             P+  + K  V  LA  +G+        ++IC
Sbjct: 205 NRLEYDQGFFVKNGDGAADVK---PIAHLYKSQVYALAAHLGIP-------EEIC 249


>gi|217077353|ref|YP_002335071.1| ATPase, PP-loop superfamily [Thermosipho africanus TCF52B]
 gi|217037208|gb|ACJ75730.1| ATPase, PP-loop superfamily [Thermosipho africanus TCF52B]
          Length = 289

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 33/199 (16%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ +++VA+SGG DS   S V + LK                     R G     +   +
Sbjct: 40  KNKKLLVAISGGKDSVVVSYVLSKLKEK---------FNLQIEYFFIRLGIPTFTEKSEE 90

Query: 76  -ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A RV ++IN    ++D ++     ++      Y       PC  C    ++  L     
Sbjct: 91  IATRVTESINYPLTIYDLKKEEGFTIMD---VKYK------PCSYCGMIRRY-ILNKYAF 140

Query: 135 QLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +   D +  GH +      ++     K    + R   L   Q+       +++L     P
Sbjct: 141 ENDFDYVVLGHNLDDEVFFIFNNMFNKNITQLQRTGPLT--QT-----IKEKKLVGRIKP 193

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + +E +   A+   L 
Sbjct: 194 LYFLTEEEILLYAKLKNLP 212


>gi|291533645|emb|CBL06758.1| argininosuccinate synthase [Megamonas hypermegale ART12/1]
          Length = 404

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 54/209 (25%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK   +G +VI V         A   +G           + 
Sbjct: 5   KKVVLAYSGGLDTSVIIPWLKENYNGCEVIAV--------CADIGQGDELNVVHDKALKS 56

Query: 79  VCDTINVSHYVFDYEERF------RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               + + H   D+ E +       +AV       Y  G +    +   R      L+ +
Sbjct: 57  GASKVYIEHLTEDFVENYVFPTLKASAVYE---GKYLLGTSFARPLIAKR------LVEI 107

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLR 189
            ++ GAD +A G                           DQ  F    + + L     L 
Sbjct: 108 AKEEGADAIAHG---------------------ATGKGNDQVRF--ELSVKALAPNIKLI 144

Query: 190 FPLGDMK---KESVRDLAREMGLDIADKS 215
            P  + +   +E     A + G+ IA ++
Sbjct: 145 APWREWELRSREQEIAYAEKHGIPIATEN 173


>gi|320006774|gb|ADW01624.1| asparagine synthase [Streptomyces flavogriseus ATCC 33331]
          Length = 459

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 13/74 (17%)

Query: 23  VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V++SGGVDSS VAAL     G            S            G +   A  + D
Sbjct: 198 IAVSLSGGVDSSTVAALAVLEAG------------SSAVRTYTVGTPYGDEFAQAAWLAD 245

Query: 82  TINVSHYVFDYEER 95
            +   H    +   
Sbjct: 246 RLGTKHEEVHFGPE 259


>gi|237784943|ref|YP_002905648.1| GMP synthase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757855|gb|ACR17105.1| GMP synthase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 524

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V            RKG     +   D   
Sbjct: 220 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF-----VDHGLLRKGEREQVE--ND--F 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T   +    D  + F +A+                 +          L         
Sbjct: 271 VAST-GANLVTVDETDAFLSALKGVTDPEKKRKAIGNEFIRSFERAVAGVLSDAPEGARV 329

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 330 DFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFTLVEPLRLLFKD 380

Query: 199 SVRDLAREMGLDIA 212
            VR + RE+GL  A
Sbjct: 381 EVRAVGRELGLPSA 394


>gi|47094954|ref|ZP_00232567.1| GMP synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898730|ref|ZP_05258654.1| GMP synthase [Listeria monocytogenes J0161]
 gi|254911781|ref|ZP_05261793.1| GMP synthase [Listeria monocytogenes J2818]
 gi|254936107|ref|ZP_05267804.1| GMP synthase [Listeria monocytogenes F6900]
 gi|47016572|gb|EAL07492.1| GMP synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608697|gb|EEW21305.1| GMP synthase [Listeria monocytogenes F6900]
 gi|293589733|gb|EFF98067.1| GMP synthase [Listeria monocytogenes J2818]
          Length = 514

 Score = 47.8 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMTTLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|119872946|ref|YP_930953.1| NAD+ synthetase [Pyrobaculum islandicum DSM 4184]
 gi|119674354|gb|ABL88610.1| NH(3)-dependent NAD(+) synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 263

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (32%), Gaps = 50/185 (27%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DSS   AL     G D V+ + L                  QDV DA  +   + V H+V
Sbjct: 35  DSSTALALAVEALGADRVVALVL-----------PSRYTPQQDVEDAVSLAKQLGVRHFV 83

Query: 90  FDYEERFRNAVIVPF--ASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVLATGH 145
                   + ++  +     Y  G+        N    V+ S L     +    VL TG 
Sbjct: 84  VQI-----DQIVSAYSSLPFYDEGDQ---VARGNLMARVRMSILYYYANRYDMLVLGTGD 135

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
             +S L +G   K         D   D                  P+GD+ K  VR +A+
Sbjct: 136 --KSELMLGYFTKY-------GDGGVD----------------LLPIGDLYKTQVRRMAK 170

Query: 206 EMGLD 210
            +G+ 
Sbjct: 171 HLGVP 175


>gi|310816658|ref|YP_003964622.1| glutamine-dependent NAD(+) synthetase [Ketogulonicigenium vulgare
           Y25]
 gi|308755393|gb|ADO43322.1| glutamine-dependent NAD(+) synthetase [Ketogulonicigenium vulgare
           Y25]
          Length = 554

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV++ +SGG+DS++VAA+     G + V GV L                +   + DA   
Sbjct: 288 RVLLGLSGGIDSALVAAIAVDALGAENVRGVML-----------PSRYTSDHSLEDAEVC 336

Query: 80  CDTINVSHYVFDYE 93
              + +     +  
Sbjct: 337 ARALGIKLDTVEIA 350


>gi|239979964|ref|ZP_04702488.1| GMP synthase [Streptomyces albus J1074]
          Length = 542

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 23/193 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGGVDS+V AAL+++     IG  L          RKG     +   D   V 
Sbjct: 238 KRAICGLSGGVDSAVAAALVQKA----IGTQLTCVYVDHGLMRKGETEQVE--KD--FVA 289

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLG 137
            T  V   V D EERF  A+             G   +   +  +    +++++     G
Sbjct: 290 AT-GVQLKVVDAEERFLTALAGVSDPEQKRKIIGREFIRVFEQAQ----AEIVAEAAGEG 344

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            DV            V   G       +           +         +L  PL  + K
Sbjct: 345 EDVAFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPDDIEFELVEPLRMLFK 397

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 398 DEVRMVGQELGLP 410


>gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Lawsonia intracellularis PHE/MN1-00]
          Length = 341

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +L +N +   V+V  SGGVDS  +A +L   G DV+   +           +    +  D
Sbjct: 31  NLSQNIQGT-VIVGCSGGVDSMALALILHCLGIDVVFAHM---------DHQLRAESKDD 80

Query: 73  VYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAG--ETPLPCVDCNRTVKFSD 128
               +     ++    +   D         I   A  Y  G  ET        R  ++  
Sbjct: 81  ANHVKSFAAALDRRCIISRVD---------ISGLAIKYKKGIEETA-------RQERYCF 124

Query: 129 LLSVTRQLGADVLATGHYIR 148
           L  V ++ GA  +ATGH++ 
Sbjct: 125 LEQVRKEYGAQWIATGHHLN 144


>gi|51246771|ref|YP_066655.1| glutamine-dependent NAD(+) synthetase [Desulfotalea psychrophila
           LSv54]
 gi|50877808|emb|CAG37648.1| probable glutamine-dependent NAD(+) synthetase [Desulfotalea
           psychrophila LSv54]
          Length = 551

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++ AA+     G + V GV                  +G    DA+ + 
Sbjct: 297 VVLGLSGGIDSALTAAIAVDALGAENVQGV-----------ALPSQYSSGGSYDDAQSLA 345

Query: 81  DTINVSHYVFDYEERF 96
           + +     +   ++ F
Sbjct: 346 ENLGCDFKMIPIKDLF 361


>gi|88855841|ref|ZP_01130504.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine actinobacterium PHSC20C1]
 gi|88815165|gb|EAR25024.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine actinobacterium PHSC20C1]
          Length = 533

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 41/201 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDS+V AA++ +  G  ++ + +         ++       +D      V 
Sbjct: 230 RVICGLSGGVDSAVAAAIVHKAVGDQLVCIFV----DHGLLRQDERRQVEEDY-----VA 280

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
            T  V     D  ++F +A          AG T     +  R +          +    L
Sbjct: 281 ST-GVRLVTVDAVDQFMDA---------LAGVT---DPETKRKIIGREFIRSFENAAEAL 327

Query: 137 GADVLATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             +   +   ++  +        V   G       +           +    +    DL 
Sbjct: 328 VLETQGSDETVKFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLQFDLV 380

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR + RE+GL 
Sbjct: 381 EPLRTLFKDEVRAIGRELGLP 401


>gi|325295220|ref|YP_004281734.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065668|gb|ADY73675.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 454

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 39/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVV----AALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++ +V+VA+SGG DS V        LK     D+    L      + S+R        D 
Sbjct: 18  ENSKVLVALSGGPDS-VTLLHILLQLKEKLKIDIAAAHLNHMLRGEESER--------DE 68

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              +++C    +      + +R             + G+         R V++  L    
Sbjct: 69  NFVKKLCSDWGIPL----FTKREN-------IKEISKGKNIEAVA---REVRYRFLEETL 114

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +++  D +ATGH     +           + +   ++     F     ++    +  PL 
Sbjct: 115 KKINGDYIATGHTASDLVE-----TVILNLTKGTGIK----GFRGFFPKR--EKIIRPLF 163

Query: 194 DMKKESVRDLAREMGLD 210
           ++ +E + +  +E  + 
Sbjct: 164 EVTREEIENYIKENNIP 180


>gi|307327693|ref|ZP_07606877.1| GMP synthase, large subunit [Streptomyces violaceusniger Tu 4113]
 gi|306886591|gb|EFN17593.1| GMP synthase, large subunit [Streptomyces violaceusniger Tu 4113]
          Length = 565

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 25/194 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL+++  G  +  V     +     K +              V
Sbjct: 261 KRAICGLSGGVDSAVAAALVQKAIGDQLTCVY---VDHGLMRKGESEQVEKDF------V 311

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
             T  V   V + EERF +A+             G   +   +  +    ++L++     
Sbjct: 312 AAT-GVQLKVVEAEERFLSALAGVSDPEEKRKIIGREFIRVFEQAQ----AELVAEAGAA 366

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G DV            V   G       +           +          L  PL  + 
Sbjct: 367 GEDVEFLVQGTLYPDVVESGGGSGTANIKSHHN-------VGGLPDDIEFQLVEPLRRLF 419

Query: 197 KESVRDLAREMGLD 210
           K+ VR + +E+GL 
Sbjct: 420 KDEVRMVGQELGLP 433


>gi|322418962|ref|YP_004198185.1| N-acetyl sugar amidotransferase [Geobacter sp. M18]
 gi|320125349|gb|ADW12909.1| N-acetyl sugar amidotransferase [Geobacter sp. M18]
          Length = 391

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 37/200 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ +SGG DSS +  L K  G   + V     +NS  A+             + R V   
Sbjct: 78  VIGVSGGTDSSYMVYLAKEWGLRPLAVHYDNTWNSAIAT------------QNIRHVLGA 125

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           ++V    +V D +E   + +   F  +  A       +    T     +     + G   
Sbjct: 126 LDVDLYTHVIDNKEA--DDIFRAFFYAGVAEIEASTDLALAET-----MYRAAHKYGVQY 178

Query: 141 LATGHYIRSRLYVGD-----DGKRRRIMCRPMDLERDQSY-------FLFATTQQQLCDL 188
           +  GH   +           DG+  R +          SY       FL+ +   ++  +
Sbjct: 179 VLEGHSFVTEGITPVGKNYFDGQYIRSIHGKFGEMPMHSYPLMTFERFLWWSCVARIKKI 238

Query: 189 RFPLG--DMKKESVRDLARE 206
           R P    +  KE  R     
Sbjct: 239 R-PFWYINYSKEEARAFLER 257


>gi|114705909|ref|ZP_01438812.1| argininosuccinate synthase [Fulvimarina pelagi HTCC2506]
 gi|114538755|gb|EAU41876.1| argininosuccinate synthase [Fulvimarina pelagi HTCC2506]
          Length = 405

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 17/131 (12%)

Query: 18  PKD-MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           P+D  +VV+A SGG+D+S++   L+     +V+  T                  G+++  
Sbjct: 4   PRDVKKVVLAYSGGLDTSIILKWLQTELNAEVVTFT-------------ADLGQGEELGP 50

Query: 76  ARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133
           AR   +   V   Y+ D  E F    + P   + A  E T L      R +    L+ + 
Sbjct: 51  AREKAERAGVKDIYIEDVREEFCRDFVFPMFRANAVYEGTYLLGTSIARPLISKRLVEIA 110

Query: 134 RQLGADVLATG 144
           R+ GAD +A G
Sbjct: 111 RETGADAIAHG 121


>gi|46139763|ref|XP_391572.1| hypothetical protein FG11396.1 [Gibberella zeae PH-1]
          Length = 671

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCA------- 69
           D+ V V +SGG+DSS VA +   L + G      T +L N          C         
Sbjct: 266 DVPVAVYLSGGIDSSSVAGMVSHLIKQG------T-KLGNETSLLPSSMKCYTVQFDEGS 318

Query: 70  -GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +   ARR  D + V  ++    +    A++  F  +    E PLP ++    +    
Sbjct: 319 GADESAIARRTADFLGVDIHLV---KMDEEALVSRFEDTTWYSEVPLPDLNGMGRL---A 372

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-DQSYFLFAT-TQQQLC 186
           L       G   + TG          D+        R   L   D S+    T T++Q  
Sbjct: 373 LAEAVHAQGIKAVITGE-------GSDEHFGGYDAFRADSLSEPDHSWPAMMTDTERQEA 425

Query: 187 DLR 189
              
Sbjct: 426 HAL 428


>gi|320158026|ref|YP_004190404.1| argininosuccinate synthase [Vibrio vulnificus MO6-24/O]
 gi|319933338|gb|ADV88201.1| argininosuccinate synthase [Vibrio vulnificus MO6-24/O]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 17/173 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   V+   SGG+DSS +  +LK     V  V + L +  + SK              + 
Sbjct: 16  QAKHVLTLFSGGLDSSYLLEILKSSRAKVTAVAIDLGDDIEESKL-------------KL 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           + D       + D ++ F    +     + A      P     +R +     + + + LG
Sbjct: 63  ITDHYGFDLKILDAKQEFVEHSLFSAIQAQALYLGDYPVSSSLSRPIIVKKAVELAQILG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            D +              +G   R   +         Y   A ++++     F
Sbjct: 123 CDAIIHTANQSQNSLRRLNGAIERSGYQGFYGS---PYEYSAISREEKAQTLF 172


>gi|222529622|ref|YP_002573504.1| PP family ATPase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456469|gb|ACM60731.1| PP family ATPase [Caldicellulosiruptor bescii DSM 6725]
          Length = 267

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 46/241 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LLK   +DV+G          A          ++  DA ++   
Sbjct: 23  VLVAFSGGVDST---FLLKVS-FDVLG------EKAIAVFSSSVLSPQREKEDAAKLAKD 72

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I     V +  + F N     F          L C  C + +    L  +  +L  + + 
Sbjct: 73  IGARLIVIE-RDVFSN---EDFMK-----NDRLRCYYCKKDL-IKRLKVLKEELNLNEIV 122

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            G          DD +  R   + ++ E  +S  +                 + KE +R 
Sbjct: 123 EG-------SNIDDLQDFRPGRKALEEEGIKSPLVET--------------GLTKEEIRY 161

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNG--QILGRHNGI 259
           L++E G+    K  S   C V +  Y D +       I    D +   G  Q+  RH+G 
Sbjct: 162 LSKEFGISTYQKHSS--ACLVTRIPYGDEITLEKLQMIEKAEDFLVQKGFSQVRVRHHGA 219

Query: 260 I 260
           I
Sbjct: 220 I 220


>gi|330836678|ref|YP_004411319.1| argininosuccinate synthase [Spirochaeta coccoides DSM 17374]
 gi|329748581|gb|AEC01937.1| argininosuccinate synthase [Spirochaeta coccoides DSM 17374]
          Length = 413

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 32/194 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++A SGG+D+SV+   L   GY+VI                      +D     +   
Sbjct: 5   KVILAYSGGLDTSVILKWLANKGYEVIA-------------YVADVGQNEDYKAIEKKAF 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                  Y+ D  +      + P   + A  E          R +     + + ++   +
Sbjct: 52  ATGASKVYIEDLRKELVTDYVFPALKANAVYENLYMLGTSLARPIIAKRHMEIAKKENTN 111

Query: 140 VLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           ++A G   +    V  +   R  M   R +   +D  +      +               
Sbjct: 112 IVAHGATGKGNDQVRFEFGYRMHMPDVRIISPWKDPEWLGTFVGR--------------- 156

Query: 198 ESVRDLAREMGLDI 211
             +   A + G+ I
Sbjct: 157 SDMIAYAEKHGIPI 170


>gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 469

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 27/127 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           ++VVA+SGG DS V  ALL +          + +   +               DA  V  
Sbjct: 32  KMVVAVSGGGDS-VALALLLK----------RFWPGEQVWGHVDHGIRETSGRDADFVSA 80

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             ++  +  +V  +     + +                     R V+ + L  +  +LGA
Sbjct: 81  LAESWGIRCHVGRFHVP-TDRIKGESME------------MAARRVRHAFLEDLASRLGA 127

Query: 139 DVLATGH 145
             +AT H
Sbjct: 128 GFIATAH 134


>gi|313144378|ref|ZP_07806571.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129409|gb|EFR47026.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 274

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            +  +V++ +SGG DS ++A +L           +Q +   K   +        G +   
Sbjct: 45  KEGDKVLLGLSGGKDSILLATIL---------AYMQRHAPFKFEFKALTVDYGRGGEYEY 95

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+ + + +      E +R  +            T   C  C+R ++   L S   +
Sbjct: 96  IFEYCEKLGIPY------ELYRTDIYE-ILEQNKREGTIY-CSFCSR-MRRGALYSKALE 146

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 147 YGYNKLALAHHL 158


>gi|291451817|ref|ZP_06591207.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           albus J1074]
 gi|291354766|gb|EFE81668.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           albus J1074]
          Length = 530

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 23/193 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R +  +SGGVDS+V AAL+++     IG  L          RKG     +   D   V 
Sbjct: 226 KRAICGLSGGVDSAVAAALVQKA----IGTQLTCVYVDHGLMRKGETEQVE--KD--FVA 277

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLG 137
            T  V   V D EERF  A+             G   +   +  +    +++++     G
Sbjct: 278 AT-GVQLKVVDAEERFLTALAGVSDPEQKRKIIGREFIRVFEQAQ----AEIVAEAAGEG 332

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            DV            V   G       +           +         +L  PL  + K
Sbjct: 333 EDVAFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPDDIEFELVEPLRMLFK 385

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+GL 
Sbjct: 386 DEVRMVGQELGLP 398


>gi|281418862|ref|ZP_06249881.1| PP-loop domain protein [Clostridium thermocellum JW20]
 gi|281407946|gb|EFB38205.1| PP-loop domain protein [Clostridium thermocellum JW20]
          Length = 237

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDS---SVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS    V    LK      +++  +TL                   D+  
Sbjct: 26  RIAVGVSGGKDSLTLLVALRQLKNFLPVKFELKAITL------------TMGIGEVDLSP 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R +C+ I+VS+ V          +I          +   PC  C   ++   L +  ++
Sbjct: 74  VRELCERIDVSYTV-------EETLIGKIVFEERKEK--NPCSLC-ANLRRGALHNTAKR 123

Query: 136 LGADVLATGHYIR 148
           LG + +A  H++ 
Sbjct: 124 LGCNKVALAHHMH 136


>gi|224437935|ref|ZP_03658877.1| hypothetical protein HcinC1_08178 [Helicobacter cinaedi CCUG 18818]
          Length = 303

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75
            +  +V++ +SGG DS ++A +L           +Q +   K   +        G +   
Sbjct: 74  KEGDKVLLGLSGGKDSILLATIL---------AYMQRHAPFKFEFKALTVDYGRGGEYEY 124

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+ + + +      E +R  +            T   C  C+R ++   L S   +
Sbjct: 125 IFEYCEKLGIPY------ELYRTDIYE-ILEQNKREGTIY-CSFCSR-MRRGALYSKALE 175

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 176 YGYNKLALAHHL 187


>gi|317476539|ref|ZP_07935786.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907282|gb|EFV28989.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 370

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 22  RVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGG DS V    LL+  GY+        +   K S R        D     ++C
Sbjct: 21  KVIIALSGGADS-VALLCLLQTLGYNCEAAHCNFHLRGKESDR--------DEAFVCQLC 71

Query: 81  DTINVSHYVFDY----EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               V  ++  +        R+  I                    R +++     + R+ 
Sbjct: 72  AKRQVPLHIVHFNTVRTAEERHISIE----------------MAARELRYEWFEEIRRKS 115

Query: 137 GADVLATGHY 146
           GA+V+A  H+
Sbjct: 116 GANVIAVAHH 125


>gi|289434353|ref|YP_003464225.1| GMP synthase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170597|emb|CBH27137.1| GMP synthase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 518

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 268

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 269 VMTTLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 320

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G   LA G        + + G       +           +    +     L  PL 
Sbjct: 321 KLDGVQFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 370

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 371 TLFKDEVRALGTELGMP 387


>gi|218130045|ref|ZP_03458849.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697]
 gi|217987765|gb|EEC54092.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697]
          Length = 426

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 22  RVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A+SGG DS V    LL+  GY+        +   K S R        D     ++C
Sbjct: 21  KVIIALSGGADS-VALLCLLQTLGYNCEAAHCNFHLRGKESDR--------DEAFVCQLC 71

Query: 81  DTINVSHYVFDY----EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               V  ++  +        R+  I                    R +++     + R+ 
Sbjct: 72  AKRQVPLHIVHFNTVRTAEERHISIE----------------MAARELRYEWFEEIRRKS 115

Query: 137 GADVLATGHY 146
           GA+V+A  H+
Sbjct: 116 GANVIAVAHH 125


>gi|254412310|ref|ZP_05026084.1| argininosuccinate synthase [Microcoleus chthonoplastes PCC 7420]
 gi|196180620|gb|EDX75610.1| argininosuccinate synthase [Microcoleus chthonoplastes PCC 7420]
          Length = 400

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR--- 78
           +VV+A SGGVD+SV    LK +           +  ++          G ++   +    
Sbjct: 6   KVVLAYSGGVDTSVCIPYLKEE-----------WGVKEVITLAADLGQGDELEPIKEKAL 54

Query: 79  ---VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
                +++     V D  ERF      P   + A  E   P      R +    L+    
Sbjct: 55  TSGAAESL-----VADATERFVTDYAFPAIQANALYENRYPLSTALARPLIAKLLVEAAH 109

Query: 135 QLGADVLATG 144
           + GAD +A G
Sbjct: 110 KYGADAVAHG 119


>gi|218437297|ref|YP_002375626.1| NAD synthetase [Cyanothece sp. PCC 7424]
 gi|218170025|gb|ACK68758.1| NAD+ synthetase [Cyanothece sp. PCC 7424]
          Length = 560

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 18/128 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+ +SGG+DSS+VA +  +  G D V+GV +                +   + DA  
Sbjct: 305 TKVVLGLSGGIDSSLVATIAVKAMGKDNVLGVLM-----------PSPYSSEHSITDAEA 353

Query: 79  VCDTINVSHYVFDYEERFR--NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +   + +  Y        +  + ++ P  +   +G      +     ++ + L+++  + 
Sbjct: 354 LVKNLEIKSYQLPIAPAMKVYDQILDPLFAGTQSGI-AEENIQS--RIRGNLLMAIANKF 410

Query: 137 GADVLATG 144
           G  +L+TG
Sbjct: 411 GYLLLSTG 418


>gi|153807738|ref|ZP_01960406.1| hypothetical protein BACCAC_02020 [Bacteroides caccae ATCC 43185]
 gi|149129347|gb|EDM20561.1| hypothetical protein BACCAC_02020 [Bacteroides caccae ATCC 43185]
          Length = 248

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL +        + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGKRVRIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+   V    +            P   +  +     PC     NR      
Sbjct: 78  SDTAYLKAHCEAYGVPFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|126661864|ref|ZP_01732863.1| GMP synthetase (glutamine-hydrolyzing) [Flavobacteria bacterium
           BAL38]
 gi|126625243|gb|EAZ95932.1| GMP synthetase (glutamine-hydrolyzing) [Flavobacteria bacterium
           BAL38]
          Length = 510

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           ++     + +VV+ +SGGVDS+V A LL + 
Sbjct: 206 EMKAKIGNDKVVLGLSGGVDSTVAAVLLNKA 236


>gi|110678543|ref|YP_681550.1| NAD synthetase [Roseobacter denitrificans OCh 114]
 gi|109454659|gb|ABG30864.1| glutamine-dependent NAD(+) synthetase [Roseobacter denitrificans
           OCh 114]
          Length = 552

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDS++VAA+     G   +   +                + + + DA  V 
Sbjct: 286 KVLLGLSGGVDSALVAAIAVDALGAQNVRCVM----------LPSEYTSAESLEDAEAVA 335

Query: 81  DTINVSHYVFDYEE 94
             +   +      E
Sbjct: 336 KALGCHYDYVPITE 349


>gi|94495596|ref|ZP_01302176.1| argininosuccinate synthase [Sphingomonas sp. SKA58]
 gi|94424984|gb|EAT10005.1| argininosuccinate synthase [Sphingomonas sp. SKA58]
          Length = 405

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 30/134 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+V+A SGG+D+SV+   L++  G +V+  T                  G+++  AR   
Sbjct: 7   RIVLAFSGGLDTSVILKWLQQTYGCEVVTFT-------------ADLGQGEELEPARAKA 53

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + V        D  E F    + P   S       Y  G +    +   R +      
Sbjct: 54  QLMGVKQEHIFIDDLREEFVKDYVFPMMRSNALYEGLYLLGTSIARPLIAKRQI------ 107

Query: 131 SVTRQLGADVLATG 144
            + +Q+GAD ++ G
Sbjct: 108 EIAKQVGADAVSHG 121


>gi|88809377|ref|ZP_01124885.1| Argininosuccinate synthase [Synechococcus sp. WH 7805]
 gi|88786596|gb|EAR17755.1| Argininosuccinate synthase [Synechococcus sp. WH 7805]
          Length = 401

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   RR
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRR 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D    F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALDAGASQSLVGDLIRPFIEEFAFPAIRANALYEGRYPLSTALARPLIARRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|291528871|emb|CBK94457.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale M104/1]
          Length = 247

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 19/136 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           D +   ++ ++ + +SGG DS  +   L   R  Y V             +         
Sbjct: 16  DYNMITENDKIAIGVSGGKDSLTLLYALSGIRSFYPV--------PFELVAIAVDLGYED 67

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D+   + +CD ++V  YV       +  +         +     PC  C +  K   L 
Sbjct: 68  FDLKPVKALCDELSVEFYVV------KTDIGRISLE--KSKNQASPCSWCAKLRK-GALN 118

Query: 131 SVTRQLGADVLATGHY 146
                +G + +A  H+
Sbjct: 119 DFALSVGCNKIAYAHH 134


>gi|261367670|ref|ZP_05980553.1| PP-loop family protein [Subdoligranulum variabile DSM 15176]
 gi|282570463|gb|EFB75998.1| PP-loop family protein [Subdoligranulum variabile DSM 15176]
          Length = 252

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 36/137 (26%)

Query: 22  RVVVAMSGGVDSSVV---------AALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAG 70
           RV+V +SGG DS VV         A L    G  ++V  VTL           +      
Sbjct: 26  RVMVGVSGGKDS-VVLTIALGRLRAYL----GVPFEVQAVTL----DPCFGGVETDYSPL 76

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            +++ A       N+ + V       R   I P    Y       PC  C   ++   L 
Sbjct: 77  SELFAAE------NIPYEV-------RRTDIGPVVFDYRKES--NPCALC-AKLRRGTLH 120

Query: 131 SVTRQLGADVLATGHYI 147
           +  +QLG + +A GH++
Sbjct: 121 TAAQQLGCNKVALGHHL 137


>gi|218282849|ref|ZP_03489002.1| hypothetical protein EUBIFOR_01588 [Eubacterium biforme DSM 3989]
 gi|218216305|gb|EEC89843.1| hypothetical protein EUBIFOR_01588 [Eubacterium biforme DSM 3989]
          Length = 378

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 30/130 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + V +SGG DS ++A   +         +DV  + +            G      DV   
Sbjct: 136 IAVCISGGKDSMLMAKCFQELHKHSPVPFDVKYIVM----------DPGYSKENHDVI-- 183

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R    +N+   +      F + +     +         PC  C   ++   L +  + L
Sbjct: 184 ERNAQRLNIPIEI------FESDIFDNVFNIEK-----NPCYIC-ARMRRGHLYNYAKNL 231

Query: 137 GADVLATGHY 146
           G + +A GH+
Sbjct: 232 GCNKIALGHH 241


>gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
          Length = 528

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 55/199 (27%), Gaps = 36/199 (18%)

Query: 20  DMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R++ A+SGG DS V    LLK  G D I   L                +  D     +
Sbjct: 23  EGRLLAAVSGGGDS-VALLYLLKAAGRDTIVAHL---------DHALRPDSAADAAFVEK 72

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   +                V V   +               R V+++ L  V R+  A
Sbjct: 73  LAQRLGFPLET--------EHVDVRALAHRKRIN----LEAAAREVRYAFLARVARRWKA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + T H +       +       + R                  Q   +  PL +  + 
Sbjct: 121 RCILTAHTL-----DDNAETVLLQILRGAGRG-------LGIRPLQ-RRVARPLLEFSRA 167

Query: 199 SVRDLAREMGLDIADKSDS 217
            +R      G    +   +
Sbjct: 168 ELRAYLEARGARWLEDPTN 186


>gi|325479605|gb|EGC82698.1| PP-loop family protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 269

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 28/142 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGS 66
           +     +  +V VA+SGG DS ++A L++         +DV  + +          ++  
Sbjct: 28  EFSLINEGDKVAVAISGGKDSLLLAKLIEELHKHSKVKFDVEYICM-----DPGYDKENR 82

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               +++         + +      +   + + V    A +   G+   PC  C   ++ 
Sbjct: 83  DQLEKNLAY-------LKI------HANIYDSQVFE-VAETITKGD--YPCYMC-ARMRR 125

Query: 127 SDLLSVTRQLGADVLATGHYIR 148
             L +  ++LG + +A GH++ 
Sbjct: 126 GFLYAKAKELGCNKVALGHHMN 147


>gi|255636366|gb|ACU18522.1| unknown [Glycine max]
          Length = 476

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+  T          +        +    A   C
Sbjct: 80  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT------ADVGQGIKELEGLEQKAKASGAC 133

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 134 Q-----LVVKDLKEEFVKDYIFPCLRAGAVYERKYLLGTSMA------RPVIAKAMVDVA 182

Query: 134 RQLGADVLATG 144
           +++GAD ++ G
Sbjct: 183 KEVGADAVSHG 193


>gi|221481085|gb|EEE19493.1| cancer-associated gene protein, putative [Toxoplasma gondii GT1]
          Length = 575

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 19  KDMRVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  +V V +SGG DS+V   V   L     + +G++L L     A            +  
Sbjct: 112 RGQKVAVCVSGGKDSAVLLHVLHTLNAR--ENLGLSLHLL----AVDEGIKGYRDHALAA 165

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            RR  +  N+  +V  Y   +    +   A     G+    C  C    +        + 
Sbjct: 166 VRRNSEVYNLPLHVVSYASLYHGWTMDRIAQQALLGKDGD-CTFCGIFRR-QAFERGAQD 223

Query: 136 LGADVLATGHYI 147
           +GADVL TGH  
Sbjct: 224 IGADVLCTGHNA 235


>gi|154509654|ref|ZP_02045296.1| hypothetical protein ACTODO_02187 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799288|gb|EDN81708.1| hypothetical protein ACTODO_02187 [Actinomyces odontolyticus ATCC
           17982]
          Length = 518

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 41/201 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV AAL+ +  G  +    +   +       +                 
Sbjct: 216 VICALSGGVDSSVAAALVHKAVGDQLTCFFI---DHGLLRAGEREQVENDY-------AR 265

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            + +     D  ERF +A          AG T  P  +  R +   +        ++   
Sbjct: 266 GMGIRVITCDESERFLSA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQKQVI 313

Query: 139 DVL--ATGHY------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + +  A G              V   G       +           +    +    +L  
Sbjct: 314 EEVGAAGGEVKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDMTFELVE 366

Query: 191 PLGDMKKESVRDLAREMGLDI 211
           PL  + K+ VR + RE+GL  
Sbjct: 367 PLRTLFKDEVRAVGRELGLPN 387


>gi|75676987|ref|YP_319408.1| argininosuccinate synthase [Nitrobacter winogradskyi Nb-255]
 gi|119361299|sp|Q3SNT5|ASSY_NITWN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|74421857|gb|ABA06056.1| argininosuccinate synthase [Nitrobacter winogradskyi Nb-255]
          Length = 409

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 30/139 (21%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + K  +VV+A SGG+D+S++   L+   G +V+  T                  G+++  
Sbjct: 2   SKKVQKVVLAYSGGLDTSIILKWLQTTYGAEVVTFT-------------ADLGQGEELEP 48

Query: 76  ARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVK 125
           ARR    + +     ++ D  E F    + P           Y  G +    +   + + 
Sbjct: 49  ARRKAQLLGIKDENIFIEDLREEFVRDYVFPMFRANAVYEGQYLLGTSIARPLIAKKQI- 107

Query: 126 FSDLLSVTRQLGADVLATG 144
                 +  ++GAD +A G
Sbjct: 108 -----EIAEKVGADAVAHG 121


>gi|298243234|ref|ZP_06967041.1| argininosuccinate synthase [Ktedonobacter racemifer DSM 44963]
 gi|297556288|gb|EFH90152.1| argininosuccinate synthase [Ktedonobacter racemifer DSM 44963]
          Length = 419

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+A SGG+D+SV    +K   Y  DVI +T+ + N R  S              A R  
Sbjct: 4   VVLAYSGGLDTSVAIRWIKEK-YNLDVIALTIDVGNERDLSAI------------AER-A 49

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             I  V   V D    F    + P   + A  E   P      R +    L+ V RQ GA
Sbjct: 50  RKIGAVKALVVDGRNDFIRYFVWPALQAGAIYEGQYPLATALARPLIARLLVEVARQEGA 109

Query: 139 DVLATG 144
             +A G
Sbjct: 110 VAVAHG 115


>gi|291561761|emb|CBL40561.1| ATP-utilizing enzymes of the PP-loop superfamily
           [butyrate-producing bacterium SS3/4]
          Length = 276

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 48/196 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + +A SGG DSS +    K  G +V            ++  +       ++ DA+ + ++
Sbjct: 26  IALAFSGGTDSSYLLYAAKACGVNVHAYY-------VSTPFQ----PQFELDDAKLLAES 74

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGAD 139
           ++    V  + +   + V+              P   C  C   V F  +L   ++ G  
Sbjct: 75  LHADMTVLPF-DVLTDKVVK-----------SNPKDRCYYCKNQV-FGGILKAAKEDGFT 121

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +  G          DD   R  M R +   +         +  +L         + K +
Sbjct: 122 EIMDG------TNASDDAGDRPGM-RALKEMK-------VLSPLRLS-------GITKTA 160

Query: 200 VRDLAREMGLDIADKS 215
           +R+ +R  GL   +K 
Sbjct: 161 LREYSRNAGLFTWNKP 176


>gi|291562696|emb|CBL41512.1| argininosuccinate synthase [butyrate-producing bacterium SS3/4]
          Length = 405

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D++V+   LK +  YDV+ V +   +  + ++  G     +         
Sbjct: 4   KVILAYSGGLDTTVLIPWLKENYDYDVVCVCI---DVGQGNELDGLEERAKYCG-----A 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
             + + H V    + F +  I P   + A  E          R +    L+ + ++ GA 
Sbjct: 56  FKLYIEHVV----DEFCDEYIAPCVKANATYENKYLLGTAMARPLIAKILVDIAKKEGAV 111

Query: 140 VLATG 144
            +  G
Sbjct: 112 AICHG 116


>gi|261403320|ref|YP_003247544.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
 gi|261370313|gb|ACX73062.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
          Length = 305

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 51/243 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDAR 77
           ++++ V +SGG DS V+  +LK           + Y+S   S+          +   D  
Sbjct: 45  NVKIGVGISGGKDSLVMTYILK-----------KFYDSIPNSEIICFFVDEGIKGFRDVA 93

Query: 78  R-----VCDTINVSHYVFDYEERFRNAVIVPFASS------YAAGETPLPCVDCNRTVKF 126
           +      C   ++   +  ++E      I                    PC  C    ++
Sbjct: 94  KKYVVEFCKEFDIDLRIISFKEE-----INYTMDELVEKNYLKHLNIGKPCSFCGVVRRY 148

Query: 127 SDLLSVTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
             L           LA GH    + ++ L    +G  + I+    D+    + F+     
Sbjct: 149 -LLNKYAFLNNCTYLAIGHNLDDFCQTILMNYIEGNVKNIIQFGKDVSSS-TNFVKRIK- 205

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--GIA 240
                   PL  + +E V   A+   L    +      C      Y   +K+I       
Sbjct: 206 --------PLKLIPEEEVILYAKLNNLKYQKEP-----CPYSHLSYRYKIKKIIEMLEED 252

Query: 241 LEG 243
             G
Sbjct: 253 KPG 255


>gi|228900021|ref|ZP_04064257.1| hypothetical protein bthur0014_12300 [Bacillus thuringiensis IBL
          4222]
 gi|228907072|ref|ZP_04070936.1| hypothetical protein bthur0013_12450 [Bacillus thuringiensis IBL
          200]
 gi|228964403|ref|ZP_04125517.1| hypothetical protein bthur0004_12520 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795260|gb|EEM42752.1| hypothetical protein bthur0004_12520 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228852576|gb|EEM97366.1| hypothetical protein bthur0013_12450 [Bacillus thuringiensis IBL
          200]
 gi|228859635|gb|EEN04059.1| hypothetical protein bthur0014_12300 [Bacillus thuringiensis IBL
          4222]
          Length = 223

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A ++   + + H V D  
Sbjct: 51 --AAKIAKELGIKHTVLDMS 68


>gi|225871781|ref|YP_002753235.1| conserved hypothetical protein TIGR00268 [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792834|gb|ACO32924.1| conserved hypothetical protein TIGR00268 [Acidobacterium capsulatum
           ATCC 51196]
          Length = 284

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 60/196 (30%), Gaps = 45/196 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS+ +A       + V+G      +   A        A     DA       
Sbjct: 25  LVAYSGGVDSAYLAWRA----HRVLG------SQALAVIADSPSLARSQYRDAVEFAREQ 74

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +        E    A      +          C  C   + F+ L +   +LG   +A 
Sbjct: 75  AIPLQTIRTREMENEA---YAVNGADR------CFHCKDEL-FTVLEAERARLGWAAVAY 124

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
           G      L V D    R            Q+                PL +  + K  +R
Sbjct: 125 G------LNVDDRQDFRPG---------QQAATAHRVAA--------PLAEAGLTKSEIR 161

Query: 202 DLAREMGLDIADKSDS 217
            LA + GL + DK  S
Sbjct: 162 TLAGQAGLRLWDKPAS 177


>gi|167569872|ref|ZP_02362746.1| argininosuccinate synthase [Burkholderia oklahomensis C6786]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELIIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|75759341|ref|ZP_00739438.1| Queuosine biosynthesis protein QueC [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74493173|gb|EAO56292.1| Queuosine biosynthesis protein QueC [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 224

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A ++   + + H V D  
Sbjct: 51 --AAKIAKELGIKHTVLDMS 68


>gi|326336198|ref|ZP_08202370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691707|gb|EGD33674.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARR 78
             R+++A+SGG+DS V+A LLK          LQ+         +      + D +    
Sbjct: 18  QKRIILAISGGIDSVVLAYLLKE---------LQIPFLMAHCNFQLRGEESEGDQHFVEA 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   +++   V  +               Y         +   R +++     + ++ G 
Sbjct: 69  LAQKLSMPLEVKRFA-----------TKEYGKTHALNTQLAA-RVLRYEWFEQIRQKKGY 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D + T H              R    + +                Q   +  PL    +E
Sbjct: 117 DYILTAHQANDSWETFLINTSRGTGLKGLLGV-----------PVQNNTILRPLLGFSRE 165

Query: 199 SVRDLAREMGLDIADKS 215
            +   A+E  +   + S
Sbjct: 166 EILAFAKENNIIWREDS 182


>gi|257459455|ref|ZP_05624564.1| argininosuccinate synthase [Campylobacter gracilis RM3268]
 gi|257442880|gb|EEV18014.1| argininosuccinate synthase [Campylobacter gracilis RM3268]
          Length = 435

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 60/221 (27%)

Query: 13  DLDKNPKD-MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAG 70
             +   KD  +VV+A SGG+D+S++   L    G DV+  T                   
Sbjct: 26  GFEMAKKDVKKVVLAYSGGLDTSIILKWLGDTYGCDVVTFT-------------ADIGQN 72

Query: 71  QDVYDARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDC 120
           +D+   +     + +     +V D  E F    + P           Y  G         
Sbjct: 73  EDLEPIKNKALKLGIKKENIFVEDLREEFVRDYVFPMFRANAVYEGEYLLG------TSI 126

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---L 177
            R +    L+ + ++ GAD ++ G                           DQ  F    
Sbjct: 127 ARPLIAKKLVEIAKKTGADAISHG---------------------ATGKGNDQVRFELGA 165

Query: 178 FATTQQQLCDLRFP--LGDMKKES-VRDLAREMGLDIADKS 215
           +A        +  P  L D+     +   A++ G+DIA K 
Sbjct: 166 YALNPDI--KVIAPWRLWDLNSREKLLAYAKKNGIDIASKP 204


>gi|193212641|ref|YP_001998594.1| argininosuccinate synthase [Chlorobaculum parvum NCIB 8327]
 gi|229889859|sp|B3QN91|ASSY_CHLP8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|193086118|gb|ACF11394.1| Argininosuccinate synthase [Chlorobaculum parvum NCIB 8327]
          Length = 401

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ VA SGG+D+SV+   LK   +G +++ VT  L    +    +           A   
Sbjct: 5   KIAVAYSGGLDTSVMIKWLKDKYEGAEIVAVTGNLGQKMEVDNLEPKAL-------ATGA 57

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                 S +  D  + F    I     + A  E   P      R +    L+ V    G 
Sbjct: 58  A-----SFHFVDLRKTFVEDCIWKALKAGALYEDVYPLATALGRPILAKALVDVALAEGC 112

Query: 139 DVLATG 144
            +L  G
Sbjct: 113 TMLTHG 118


>gi|167562689|ref|ZP_02355605.1| argininosuccinate synthase [Burkholderia oklahomensis EO147]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELIIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|157813142|gb|ABV81316.1| putative GMP synthetase [Nebalia hessleri]
          Length = 200

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  V+ V +     RK    +               
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALPEEQVLAVHIDNGFMRKNESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
              + +   V      F +
Sbjct: 95  -RKLGLKLRVIKARHEFYD 112


>gi|307941982|ref|ZP_07657334.1| asparagine synthase (glutamine-hydrolysing) 1 [Roseibium sp.
          TrichSKD4]
 gi|307774772|gb|EFO33981.1| asparagine synthase (glutamine-hydrolysing) 1 [Roseibium sp.
          TrichSKD4]
          Length = 371

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          D+ V V +SGG+DSS VAA  +  G+      L+ Y     S          +   AR V
Sbjct: 13 DVPVGVMLSGGLDSSCVAAAAREAGFK-----LKTY-----SVAFRDAPEIDERPYARAV 62

Query: 80 CDTINVSHYVFDYE-ERF 96
             ++  H+  +   E F
Sbjct: 63 AKHLDCEHHEVEIGPEEF 80


>gi|254415286|ref|ZP_05029047.1| Asparagine synthase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177761|gb|EDX72764.1| Asparagine synthase family [Microcoleus chthonoplastes PCC 7420]
          Length = 591

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            L+  P++  V V +SGG+DSS +AALL + G  V           KA           +
Sbjct: 217 QLENLPREP-VGVFLSGGLDSSTIAALLVQAGVKV-----------KAYSLDFGLAGVSE 264

Query: 73  VYDARRVCDTINVSHYVFD 91
           +  A +V D +N+     D
Sbjct: 265 LPYAEQVADYLNIPLVKVD 283


>gi|302845885|ref|XP_002954480.1| hypothetical protein VOLCADRAFT_64899 [Volvox carteri f.
           nagariensis]
 gi|300260152|gb|EFJ44373.1| hypothetical protein VOLCADRAFT_64899 [Volvox carteri f.
           nagariensis]
          Length = 455

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 22/133 (16%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV +A SGG DS+V+A ++     R GY   G+ L L +  +             +   +
Sbjct: 53  RVAIAASGGKDSTVLAHIMTTLNARYGY---GLDLFLLSIDEGIAGY----RDDSLETVK 105

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           R      +   V  Y++ +    + ++           T   C  C    +   L     
Sbjct: 106 RNEQQYGIPLTVVSYKDLYGWTMDEIVAQI-------GTKNNCTFCGVFRR-QALDRGAV 157

Query: 135 QLGADVLATGHYI 147
             GA+ +ATGH  
Sbjct: 158 LAGANKIATGHNA 170


>gi|299137889|ref|ZP_07031069.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
 gi|298599819|gb|EFI55977.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
          Length = 284

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 47/210 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARRV 79
           R++VA SGGVDS+ +A     + Y+V+G  +   + +S    +++ +             
Sbjct: 22  RLMVAYSGGVDSAYLAW----EAYEVLGPNMLAVISDSPSLPRKELAAAIAFAEAHT--- 74

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                +  ++    E  R   +               C  C   + F  + ++  +LG  
Sbjct: 75  -----IPLHILQTNEMERADYVRNDGQR---------CFHCKDEL-FDAMEALRAELGFA 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +A G   R+    GD         RP     +Q +      +  L           K++
Sbjct: 120 TIAYG---RNTDDSGD--------FRPGQKAAEQHHAAAPLAEAGLG----------KQA 158

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYF 229
           +R LA+   L + DK  S   C   + +Y 
Sbjct: 159 IRALAQAANLSVWDKPAS--ACLSSRLEYG 186


>gi|257457992|ref|ZP_05623151.1| GMP synthase [Treponema vincentii ATCC 35580]
 gi|257444705|gb|EEV19789.1| GMP synthase [Treponema vincentii ATCC 35580]
          Length = 515

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 71/201 (35%), Gaps = 30/201 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   D +V+ A+SGGVDSSV + L+ +  G  +  +     +     K + +     
Sbjct: 211 EIKRKVGDKKVISALSGGVDSSVASVLVHKAVGDQLTCIF---VDHGLLRKDEAAQVLKT 267

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +T+ ++    D  ERF   +                 +     ++      
Sbjct: 268 YR-------ETLGLNIIHVDASERFLKKLAGVTEPERKRK------IIGEEFIRV--FEE 312

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLR 189
             +++G  D L  G      +  G  G ++  + +           +    +     +L 
Sbjct: 313 EAKKIGTVDFLVQGTIYPDVIESG--GSKKAAVIKSHHN-------VGGLPEHIDFKELI 363

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR L + +G+ 
Sbjct: 364 EPLRMLFKDEVRALGKALGIP 384


>gi|218295238|ref|ZP_03496074.1| PP-loop domain protein [Thermus aquaticus Y51MC23]
 gi|218244441|gb|EED10966.1| PP-loop domain protein [Thermus aquaticus Y51MC23]
          Length = 321

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 21/129 (16%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RV+VA+SGG DS    AL   L R GY+ +G+ L         +      + + +   + 
Sbjct: 49  RVLVAVSGGKDS---LALWDVLHRLGYEAVGLHL---------ELGIGAYSRRSLEVTQA 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +   V D +E +   V  P  +  +       C    R +       V  + G 
Sbjct: 97  FAKERGLPLLVVDLKEAYGFGV--PELAELSGRVACSACGLSKRYII----NQVAVEEGF 150

Query: 139 DVLATGHYI 147
            V+ATGH +
Sbjct: 151 RVVATGHNL 159


>gi|241205251|ref|YP_002976347.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859141|gb|ACS56808.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 403

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V++ SGG+D+S++   L+   G +V+  T                  G+++  AR   
Sbjct: 6   KIVLSYSGGLDTSIILKWLQETYGCEVVTFT-------------ADLGQGEELEPARANA 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
           + + V    + D  E F +  + P   + A  E          R +    L+ + R++GA
Sbjct: 53  EMVGVKDIRIVDLREEFVSDFVFPMLRANALYEGQYLLGSSIARPLIAKHLVGIAREVGA 112

Query: 139 DVLATG 144
           D +A G
Sbjct: 113 DAVAHG 118


>gi|14595065|emb|CAC43339.1| lactam synthetase [Rhodococcus fascians]
          Length = 386

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 19/139 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           +    R  + ++  + + +R  + +SGGVDS ++A+ L R G DV  +TL+         
Sbjct: 122 LDHGLRTAATEIASSGRPIR--LLLSGGVDSGLLASYLWRAGADVRALTLR--------- 170

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                  G ++  A R    + +   V D   +   A I P      +       +  + 
Sbjct: 171 ----TPWGDEIDGASRTARHVGLPLDVIDVTAQESTAAIYPCMQHTQS--DDAEVITVHL 224

Query: 123 TVKFSDLLSVTRQLGADVL 141
            V  +    + R  GAD++
Sbjct: 225 LVTVA--FELARACGADLV 241


>gi|310778070|ref|YP_003966403.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926]
 gi|309747393|gb|ADO82055.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926]
          Length = 282

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 31/141 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      R+ V +SGG DS ++  L +         ++V+ +++         +    
Sbjct: 47  DFELIEDGDRIAVGVSGGKDSLLMCKLFQELKKDRTKNFEVVFISM-----NPGFEAMDV 101

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVK 125
                ++         +++   +FD                 A  + P  PC  C   ++
Sbjct: 102 DQFKHNLT-------ELDIPCEIFDSN-----------VWEVAFEQDPENPCFLC-AKMR 142

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L     +LG + LA GH+
Sbjct: 143 RGVLYKKVEELGCNKLALGHH 163


>gi|294013099|ref|YP_003546559.1| argininosuccinate synthase [Sphingobium japonicum UT26S]
 gi|292676429|dbj|BAI97947.1| argininosuccinate synthase [Sphingobium japonicum UT26S]
          Length = 405

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+V+A SGG+D+SV+   L++  Y    VT                  G+++  AR    
Sbjct: 7   RIVLAFSGGLDTSVILKWLQQT-YQCEVVTF-----------TADLGQGEELEPARAKAR 54

Query: 82  TINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + V        D  E F    + P   S       Y  G +    +   R +       
Sbjct: 55  LMGVKEEHIFIDDLREEFVKDYVFPMMRSNALYEGLYLLGTSIARPLIAKRQI------E 108

Query: 132 VTRQLGADVLATG 144
           + +Q+GAD ++ G
Sbjct: 109 IAKQVGADAVSHG 121


>gi|323491002|ref|ZP_08096196.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2]
 gi|323395358|gb|EGA88210.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2]
          Length = 463

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 31/224 (13%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V+V  SGG+DS V+   L       G  V  V +      + S +        D     
Sbjct: 23  KVLVGCSGGIDSMVLLYFLNSIKADLGISVAAVHVDHMLRGEESDK--------DRLFTE 74

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++     +        E F  A+ +P       G     C    RT +++  L V +Q G
Sbjct: 75  KIAKQWGI--------ECFSRAIPIPAILEKRGGNKQQVC----RTERYNYFLEVMKQTG 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A   AT H+   +L        R  +        D S+ + A+       L  PL  + K
Sbjct: 123 ATKFATAHHADDQLETILMSGVRGSLQ-------DGSFGMLASRPFGNGQLIRPLLAVVK 175

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           E +   A+ + +   + S + +  + +     +V+  +    + 
Sbjct: 176 EQISAYAKSLNIPYREDSSNAEAAYTRNRLRQNVLPLLKEENSK 219


>gi|220904026|ref|YP_002479338.1| NAD+ synthetase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868325|gb|ACL48660.1| NAD+ synthetase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 560

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKR 63
           A  L + D  +     +V+V +SGG+DSS+V  +     G + V GV +           
Sbjct: 287 ALTLGTRDFVRKCGAEKVIVGLSGGMDSSLVCCVAVEALGAENVTGVLM----------- 335

Query: 64  KGSCCAGQDVYDARRVCDTINV 85
                +   V DA  +   + +
Sbjct: 336 PSPYSSEGSVSDAHSLAQNLGI 357


>gi|260813136|ref|XP_002601275.1| hypothetical protein BRAFLDRAFT_127518 [Branchiostoma floridae]
 gi|229286568|gb|EEN57287.1| hypothetical protein BRAFLDRAFT_127518 [Branchiostoma floridae]
          Length = 457

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +   V +A SGG DS+V+A L+K   + +D  G+TL L +  +      +      +  
Sbjct: 47  KRGETVAIAASGGKDSTVLAHLMKLLNERHD-YGLTLFLLSVDEG----ITGYRDDSLET 101

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +R      +   V  Y+E +                     C  C    +   L     
Sbjct: 102 VKRNQQQYELPLKVVSYKELYGWT-----MDEIVRQIGLKNNCTFCGVFRR-QALDRGAM 155

Query: 135 QLGADVLATGHYI 147
            LG D + TGH  
Sbjct: 156 MLGVDKIVTGHNA 168


>gi|119898477|ref|YP_933690.1| argininosuccinate synthase [Azoarcus sp. BH72]
 gi|166219945|sp|A1K7J8|ASSY_AZOSB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119670890|emb|CAL94803.1| ArgG protein [Azoarcus sp. BH72]
          Length = 409

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LKFGIKPENIFIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GAD ++ G
Sbjct: 107 EIARATGADAVSHG 120


>gi|146296722|ref|YP_001180493.1| PP family ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410298|gb|ABP67302.1| ATP-utilizing enzymes of the PP-loop superfamily-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 270

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 47/210 (22%)

Query: 23  VVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+VA SGGVDS+    LLK  R   DV+G       +  A     +    ++  +A ++ 
Sbjct: 24  VLVAFSGGVDST---FLLKVCR---DVLG------ENCVAVFSSSALSPKREKQEAEKLA 71

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            +I     V +  + F N     F            C  C + +    L  +   L  + 
Sbjct: 72  GSIGAKLIVLE-RDIFDN---EDFLK-----NDMFRCYYCKKDL-IKKLKELKEDLKINQ 121

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G                      +D  +D      A  ++ +      +G   K+ +
Sbjct: 122 IVEG--------------------SNIDDLKDFRPGRKALEEENIKSPLLEVG-FTKDEI 160

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFD 230
           R L++E GL   DK  S   C V +  Y  
Sbjct: 161 RFLSKEFGLPTFDKP-SM-ACLVTRIPYGS 188


>gi|297526412|ref|YP_003668436.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255328|gb|ADI31537.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 323

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 28/193 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  RV++ +SGG DS V+A +L +   + IG  L L +              ++   A++
Sbjct: 47  KGDRVLLGLSGGKDSVVLAHILSKL-RESIGFKLYLAHINLGIGEYS----EKNAEVAKK 101

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + +  N    + D  +     +      +      P PC  C   VK   L ++  +L A
Sbjct: 102 ISEKTNAPLIILDLRKILGVGIPELALKT----RRP-PCSVCG-VVKRYLLNALAVELKA 155

Query: 139 DVLATGHYIR------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           + +ATGH +        + ++  + ++   +   ++  +D  Y +             PL
Sbjct: 156 NSIATGHNLDDMATFILKEFLVQNLEQIPKLAPRIEGVKD--YLVAKIK---------PL 204

Query: 193 GDMKKESVRDLAR 205
            +  +E ++  A 
Sbjct: 205 YETYEEDIKKYAE 217


>gi|257460681|ref|ZP_05625782.1| queuosine biosynthesis protein QueC [Campylobacter gracilis
          RM3268]
 gi|257442012|gb|EEV17154.1| queuosine biosynthesis protein QueC [Campylobacter gracilis
          RM3268]
          Length = 391

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 10/65 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR +  +SGG+DS+  A + +R+GY+++ +    ++  + +  K   C G       ++C
Sbjct: 1  MRALCVISGGMDSATCAYIARREGYEIVALH---FDYDQRTMGKERECFG-------KIC 50

Query: 81 DTINV 85
          D + V
Sbjct: 51 DDLGV 55


>gi|330994686|ref|ZP_08318609.1| Argininosuccinate synthase [Gluconacetobacter sp. SXCC-1]
 gi|329758327|gb|EGG74848.1| Argininosuccinate synthase [Gluconacetobacter sp. SXCC-1]
          Length = 409

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G+++  ARR  
Sbjct: 7   KKVVLAYSGGLDTSVILRWLQTT-YNCEVVTF-----------TADLGQGEELEPARRKA 54

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   V      D  E F    + P           Y  G +    +   R +       +
Sbjct: 55  EMFGVKEIFVEDLRETFVKDFVFPMFRANALYEGQYLLGTSIARPLIAQRQI------EI 108

Query: 133 TRQLGADVLATG 144
             Q+GAD +A G
Sbjct: 109 AEQVGADAVAHG 120


>gi|218781986|ref|YP_002433304.1| exsB protein [Desulfatibacillum alkenivorans AK-01]
 gi|254764330|sp|B8FMW6|QUEC_DESAA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|218763370|gb|ACL05836.1| exsB protein [Desulfatibacillum alkenivorans AK-01]
          Length = 233

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +  + VV +SGG+DS+   A+ K  G+ V  +          S   G      ++  A+R
Sbjct: 5  QKEKAVVLLSGGLDSATAMAIAKDMGFQVYAL----------SFSYGQ-RHTTELEAAKR 53

Query: 79 VCDTIN-VSHYVFD 91
          V  T+  V H V +
Sbjct: 54 VAKTLGAVEHQVAN 67


>gi|270308329|ref|YP_003330387.1| glutamine-dependent NAD(+) synthetase [Dehalococcoides sp. VS]
 gi|270154221|gb|ACZ62059.1| glutamine-dependent NAD(+) synthetase [Dehalococcoides sp. VS]
          Length = 566

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V +A  L + D        +VV+ +SGG+DSS+VAA+     G D V+GV +        
Sbjct: 288 VYQALLLGTKDYINKNGFKKVVIGLSGGIDSSLVAAIATDALGSDNVVGVIM-------- 339

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
                   +   + D+ R+ + + +       +  F++   +   S   AG
Sbjct: 340 ---PSRYSSAGSISDSLRLAENLRIKTLQIPIDPIFKS--FLSTLSEVFAG 385


>gi|146300132|ref|YP_001194723.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Flavobacterium johnsoniae UW101]
 gi|226738456|sp|A5FHB4|GUAA_FLAJ1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|146154550|gb|ABQ05404.1| GMP synthase, large subunit [Flavobacterium johnsoniae UW101]
          Length = 509

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +L +   + +VV+ +SGGVDS+V A LL + 
Sbjct: 206 ELKEKLGNDKVVLGLSGGVDSTVAAVLLNKA 236


>gi|315925493|ref|ZP_07921703.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621034|gb|EFV01005.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 293

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 63/204 (30%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDV-----IGVTLQ--LYNSRKASKRKGSCCAGQDVYD 75
           V VA SGGVDS+    LL +  +DV     IGVT+Q  +   R+  +    C   Q    
Sbjct: 41  VAVAFSGGVDST----LLLKAAHDVLGDKAIGVTVQADIVPPREMEEAADFCKTEQIR-- 94

Query: 76  ARRVC--DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            + VC  D + +        E F +               P  C  C +   FS++L + 
Sbjct: 95  -QIVCGVDALGL--------EGFAD-------------NPPDRCYWCKKN-NFSEILKIA 131

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL- 192
              G   +A G        + D G  R  M    +L                  +  PL 
Sbjct: 132 AANGFAAVAEG------SNLDDLGDYRPGMQAVAELA-----------------VVSPLR 168

Query: 193 -GDMKKESVRDLAREMGLDIADKS 215
              + K+ +R ++RE+GL   DK 
Sbjct: 169 EAGLTKDDIRAISRELGLPTWDKP 192


>gi|94987098|ref|YP_595031.1| argininosuccinate synthase [Lawsonia intracellularis PHE/MN1-00]
 gi|119361284|sp|Q1MQL7|ASSY_LAWIP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|94731347|emb|CAJ54710.1| Argininosuccinate synthase [Lawsonia intracellularis PHE/MN1-00]
          Length = 397

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   L    Y  +VI VT  L  +      +        V  A +
Sbjct: 6   KKVVLAYSGGLDTSVILKWLIAT-YNCEVIAVTADLGQNENFHDIE----EKAIVTGASK 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
                    YV D    F    I P   +       Y  G          R +    L+ 
Sbjct: 61  A--------YVVDLRNEFAKNFIFPMLRASAIYEGRYLLG------TAIARPLITKLLID 106

Query: 132 VTRQLGADVLATG 144
           + R   AD +A G
Sbjct: 107 IARAEEADAIAHG 119


>gi|110637346|ref|YP_677553.1| GMP synthase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354724|sp|Q11WK3|GUAA_CYTH3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|110280027|gb|ABG58213.1| GMP synthase (glutamine-hydrolyzing) [Cytophaga hutchinsonii ATCC
           33406]
          Length = 509

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+ +SGGVDSSV A L+ +  G ++  + +     RK    +                
Sbjct: 215 KVVLGLSGGVDSSVAAVLIHKAIGPNLTCIFVDNGLLRKNEYEEVLNSY----------- 263

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + ++    D +++F  +           G +     +  R     + + V  Q  +  
Sbjct: 264 KHMGLNVIGVDAKKQFYKS---------LEGLS---DPEAKRKAIGKEFIEVFDQ-ESHK 310

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A   ++        D      +  P    +   + +    ++    +  PL  + K+ V
Sbjct: 311 IADVKWLGQGTIY-PDIIESVSVKGPSATIKSH-HNVGGLPEKMKLKIVEPLNTLFKDEV 368

Query: 201 RDLAREMGLD 210
           R + + +G+D
Sbjct: 369 RRVGKTLGID 378


>gi|332044893|gb|EGI81086.1| Argininosuccinate synthase [Lacinutrix algicola 5H-3-7-4]
          Length = 395

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + ++V+A SGG+D+S  A  L +D YDV  V                    +++     
Sbjct: 2   SNKKLVIAYSGGLDTSYCAVSLSKD-YDVHAV-----------SVNTGGFTAEEIKKIES 49

Query: 79  VCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQL 136
               + VS Y   D    F N V+              P       +  +  ++   + +
Sbjct: 50  NAYKMGVSTYKNIDAVATFYNKVVKYLIFGNVLKNATYPLSVSAERIIQAIEIIEYAKSI 109

Query: 137 GADVLATG 144
            A+ +A G
Sbjct: 110 DAEYIAHG 117


>gi|325959954|ref|YP_004291420.1| hypothetical protein Metbo_2234 [Methanobacterium sp. AL-21]
 gi|325331386|gb|ADZ10448.1| Conserved hypothetical protein CHP00268 [Methanobacterium sp.
           AL-21]
          Length = 349

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 21/117 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +D  +++A SGG DSS+VA +              +     A            + +A +
Sbjct: 15  RDKNILIAFSGGADSSLVAKIASE-----------VSKESLAVTVDNGVMPQDFIANATK 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +   + + H V +                      P  C  C   + ++ L  +  +
Sbjct: 64  IAGELGIKHRVVEE---------NYLNDPAFRSNPPNRCYICKTKM-YTKLAEIAGE 110


>gi|262306029|gb|ACY45607.1| gln amidotransferase [Dinothrombium pandorae]
          Length = 196

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL +      VI   +     RK    K             
Sbjct: 43  NNKVLMLVSGGVDSTVCAALLHKALKPDQVIAFHIDNGFMRKNESEK-----------VE 91

Query: 78  RVCDTINVSHYVFDYEERFRNA 99
           +  ++I +     +   +F NA
Sbjct: 92  KSLNSIGLKLKAVNASYQFYNA 113


>gi|296814164|ref|XP_002847419.1| GMP synthase [Arthroderma otae CBS 113480]
 gi|238840444|gb|EEQ30106.1| GMP synthase [Arthroderma otae CBS 113480]
          Length = 541

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 58/196 (29%), Gaps = 30/196 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VCD 81
           V+ A+SGGVDS+V A L+K      IG      +   A           +    R  +  
Sbjct: 237 VIGAVSGGVDSTVAAKLMKEA----IG------DRFHAVLVDNGVLRLNEAEIVRETLTK 286

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           ++ ++  V D  ++F      V+ P       G T                    + L  
Sbjct: 287 SLGINLTVIDASDKFLGRLKGVVDPEQKRKIIGNTF-----------IEIFQDTAKTLVE 335

Query: 139 DVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                    +    +      D         P    +             L  L  PL +
Sbjct: 336 QSAGYKEGTKIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLKGMHL-KLIEPLRE 394

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR L   +G+ 
Sbjct: 395 LFKDEVRSLGTNLGIP 410


>gi|323694670|ref|ZP_08108832.1| argininosuccinate synthase [Clostridium symbiosum WAL-14673]
 gi|323501262|gb|EGB17162.1| argininosuccinate synthase [Clostridium symbiosum WAL-14673]
          Length = 416

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 25/134 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            K  ++V+A SGG+D+SV+   LK + G +V+ V         A   +G+   G +    
Sbjct: 3   KKYNKIVLAYSGGLDTSVLIPWLKENYGCEVVAV--------SADVGQGAELIGLEEKAL 54

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLL 130
           +     +    Y+ D ++ F +  I+P         +Y  G +    +   R V      
Sbjct: 55  KTGASKL----YIEDLKKEFVDEYIIPTMKAGAAYENYLLGTSFARPIIAKRIV------ 104

Query: 131 SVTRQLGADVLATG 144
            + ++ GAD +  G
Sbjct: 105 EIAKKEGADAICHG 118


>gi|256830942|ref|YP_003159670.1| thiamine biosynthesis protein [Desulfomicrobium baculatum DSM 4028]
 gi|256580118|gb|ACU91254.1| thiamine biosynthesis protein [Desulfomicrobium baculatum DSM 4028]
          Length = 357

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 37/160 (23%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
             SGG+DS + + L++  G+ V+G+          S   G      +            +
Sbjct: 9   LFSGGLDSILSSKLMQSLGHKVLGLHF-------ISPFFGKPDQVPEWE------REYGI 55

Query: 86  SHYVFDYEERFRNAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQL----GAD 139
              + D  + F    +   A+   +  G+   PCVDC        +L   ++L    GA 
Sbjct: 56  PITIIDVGQEF----VDLMAAFPPHGFGKVLNPCVDCKI-----LMLRRAKELLPVYGAS 106

Query: 140 VLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLE 170
            L +G  +  R             +D   R ++ RP+   
Sbjct: 107 YLISGEVLGQRPMSQRADTLNIIRNDADVRDLLLRPLSAG 146


>gi|283797945|ref|ZP_06347098.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|291074411|gb|EFE11775.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|295091863|emb|CBK77970.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium cf. saccharolyticum K10]
          Length = 241

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              ++ V +SGG DS  +   LK     +     + ++    +   G      ++  A+ 
Sbjct: 22  SGDKIAVGLSGGKDSLALLYALK----HIQKFYPKSFDLCAITVDLGF--GNFNLEAAQE 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C ++ V + +   E       I              PC  C +  K   L    + LG 
Sbjct: 76  FCSSLCVPYTIVPTE-------ISQVVFETRKES--NPCALCAKMRK-GALNQAAKNLGC 125

Query: 139 DVLATGHY 146
           + +A  H+
Sbjct: 126 NKIAYAHH 133


>gi|83310224|ref|YP_420488.1| argininosuccinate synthase [Magnetospirillum magneticum AMB-1]
 gi|119361285|sp|Q2W896|ASSY_MAGMM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|82945065|dbj|BAE49929.1| Argininosuccinate synthase [Magnetospirillum magneticum AMB-1]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+   Y    VT                  G+++  AR   
Sbjct: 6   KKVVLAYSGGLDTSIILRWLQDQ-YQCEVVTF-----------TADLGQGEELEPARAKA 53

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +        D  E F    + P   +       Y  G +    +   R +      
Sbjct: 54  RLMGIKEENIFIDDLREEFVRDFVFPMFRANALYEGVYLLGTSIARPLISKRQI------ 107

Query: 131 SVTRQLGADVLATG 144
            +   +GAD ++ G
Sbjct: 108 EIANMVGADAVSHG 121


>gi|312136706|ref|YP_004004043.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311224425|gb|ADP77281.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 323

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 21/102 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VA SGGVDS+++  + K    +VI VT                     + +A+++   
Sbjct: 21  IAVAFSGGVDSTLLLKIAKEVSNEVIAVT-----------VDIGAIPKNQITEAKKIARE 69

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           I V H +       +   +      +        C  C + +
Sbjct: 70  IGVKHKII------KENFLEYEWFQHEKYR----CYFCKKRM 101


>gi|291225664|ref|XP_002732808.1| PREDICTED: asparagiNyl tRNA Synthetase family member (nrs-2)-like
           [Saccoglossus kowalevskii]
          Length = 556

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 22/96 (22%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+   +SGG+DSS++ +LL    K  G  Y V     Q ++               D+  
Sbjct: 249 RIGCLLSGGLDSSLICSLLIKTAKEQGITYPV-----QTFSIGMEGSP--------DLKA 295

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIV---PFASSY 108
           AR+V + +   H+   +       V+        +Y
Sbjct: 296 ARKVANYLGTEHHEVVFTAEEGIEVLEDVIYSLETY 331


>gi|56751497|ref|YP_172198.1| argininosuccinate synthase [Synechococcus elongatus PCC 6301]
 gi|81298820|ref|YP_399028.1| argininosuccinate synthase [Synechococcus elongatus PCC 7942]
 gi|61211389|sp|Q5N1Z2|ASSY_SYNP6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|119361335|sp|Q31SC8|ASSY_SYNE7 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56686456|dbj|BAD79678.1| argininosuccinate synthetase [Synechococcus elongatus PCC 6301]
 gi|81167701|gb|ABB56041.1| argininosuccinate synthase [Synechococcus elongatus PCC 7942]
          Length = 400

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RVV+A SGGVD+SV    LK++           +   +          G ++   R+
Sbjct: 3   RAKRVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELGPIRQ 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D    F      P   + +  E   P      R +    L+    + 
Sbjct: 52  KALDSGAVESLVIDATAEFVRDYAFPAIQANSLYEGRYPLSTALARPLIAKLLVEAAAKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|255323971|ref|ZP_05365097.1| GMP synthase [Corynebacterium tuberculostearicum SK141]
 gi|255299151|gb|EET78442.1| GMP synthase [Corynebacterium tuberculostearicum SK141]
          Length = 524

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 20/193 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ R +  +SGGVDS+V AAL++R  G  +  V     +       +             
Sbjct: 219 EEGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF----- 270

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D    F   +                 +          L        
Sbjct: 271 -VAST-GAKLVTADERAAFLEKLAGVSDPEAKRKAIGAEFIRSFERAVAGVLDDAPAGST 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +          L  PL  + K
Sbjct: 329 VDYLVQGTLYPDVVESG--GGDGTANIKSHHN-------VGGLPDDVEFKLVEPLRLLFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 380 DEVRAVGRELGLP 392


>gi|332158343|ref|YP_004423622.1| NAD synthetase [Pyrococcus sp. NA2]
 gi|331033806|gb|AEC51618.1| NAD synthetase [Pyrococcus sp. NA2]
          Length = 257

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 45/181 (24%)

Query: 32  DSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+ VA L  K  G + V+G+ +  + +             +DV DA+ V +++ + + V
Sbjct: 34  DSATVAYLATKALGRERVLGLIMPYFEN-------------KDVEDAKLVAESLGIGYKV 80

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
            +        ++  F  +           +     +   L +    LG   +  G   RS
Sbjct: 81  INIRP-----IVDSFRENLNLELDRKALGNIMARTRMIILYAHANSLG--RIVLGTSNRS 133

Query: 150 RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
               G             D   D +                PL ++ K  V ++A+ +G+
Sbjct: 134 EFLTG------YFTKWG-DGASDYA----------------PLINLYKTEVWEIAKRIGV 170

Query: 210 D 210
            
Sbjct: 171 P 171


>gi|307565030|ref|ZP_07627547.1| GMP synthase (glutamine-hydrolyzing) [Prevotella amnii CRIS 21A-A]
 gi|307346343|gb|EFN91663.1| GMP synthase (glutamine-hydrolyzing) [Prevotella amnii CRIS 21A-A]
          Length = 514

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           +L     + RV++ +SGGVDSSV A LL +  G ++  + 
Sbjct: 206 ELKNQLGNDRVILGLSGGVDSSVCAVLLNKAIGSNLTCIF 245


>gi|307293760|ref|ZP_07573604.1| argininosuccinate synthase [Sphingobium chlorophenolicum L-1]
 gi|306879911|gb|EFN11128.1| argininosuccinate synthase [Sphingobium chlorophenolicum L-1]
          Length = 405

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+V+A SGG+D+SV+   L++  Y    VT                  G+++  AR    
Sbjct: 7   RIVLAFSGGLDTSVILKWLQQT-YQCEVVTF-----------TADLGQGEELEPARAKAR 54

Query: 82  TINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + V        D  E F    + P   S       Y  G +    +   R +       
Sbjct: 55  LMGVKEEHIFIDDLREEFVKDYVFPMMRSNALYEGLYLLGTSIARPLIAKRQI------E 108

Query: 132 VTRQLGADVLATG 144
           + +Q+GAD ++ G
Sbjct: 109 IAKQVGADAVSHG 121


>gi|269958411|ref|YP_003328198.1| bifunctional GMP synthase/glutamine amidotransferase [Anaplasma
           centrale str. Israel]
 gi|269848240|gb|ACZ48884.1| bifunctional GMP synthase/glutamine amidotransferase [Anaplasma
           centrale str. Israel]
          Length = 529

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 70/198 (35%), Gaps = 35/198 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RVV A+SGGVDSSV + L+ R  G  ++ V            RKG   A +D++    
Sbjct: 224 GGRVVAAISGGVDSSVASVLVHRAIGEGLLCVF-----VDTGLLRKGEASAVRDLF---- 274

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             D + +   V D  + F      V  P A     GET +                  R 
Sbjct: 275 -VDKLKMHVNVLDKSDLFMRRLAGVQDPEAKRKIIGETFIEV-----------FEQEARA 322

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           LG    L  G      +  G  G   +I  +           +    +     L  PL  
Sbjct: 323 LGDIKFLMQGTIYPDVIESGTGGSGTKI--KSHHN-------VGGLPEVMNLSLIEPLRC 373

Query: 195 MKKESVRDLAREMGLDIA 212
           + K+ VR L  E+GL  A
Sbjct: 374 LFKDEVRLLGEELGLPSA 391


>gi|331229244|ref|XP_003327288.1| GMP synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309306278|gb|EFP82869.1| GMP synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 553

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDSSV A L+    G+    + +     R    ++       D      
Sbjct: 242 DDQVIGAVSGGVDSSVAAKLMNEAIGHRFHAIMVDNGLLRMDEAQQVQQMLKVD------ 295

Query: 79  VCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               + V+  V D  + F +    V  P       G T +          F    +    
Sbjct: 296 ----LGVNLTVVDASQTFLDVLKDVEDPETKRKLIGNTFIHV--------FEAEAARIEA 343

Query: 136 LGADVLATGHYIRSRLYVG----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             A      H    +  +      D         P    +            +L  L  P
Sbjct: 344 QQASQATKTHQGTIKFLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLDNMKL-KLIEP 402

Query: 192 LGDMKKESVRDLAREMGLD 210
           L ++ K+ VR L + + + 
Sbjct: 403 LRELFKDEVRALGKLLHIP 421


>gi|282877536|ref|ZP_06286354.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella buccalis ATCC 35310]
 gi|281300360|gb|EFA92711.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella buccalis ATCC 35310]
          Length = 514

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 47/199 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGGVDSSV A LL +  G ++  +                     +  +  +
Sbjct: 213 NDKVILGLSGGVDSSVCATLLNKAIGRNLTCIF-----------VDHGLLRKNEFSNVMK 261

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV----TR 134
             + + ++    D  ++F              G T     +  R +   D + V     +
Sbjct: 262 AYEGLGLNVIGVDASKKFFAD---------LKGVT---DPEQKRKIIGRDFVEVFNAEAK 309

Query: 135 QL-GADVLA----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           ++  A  LA        I S    G   K                  +    ++    L 
Sbjct: 310 KITDAKWLAQGTIYPDRIESLSITGMVIKSHHN--------------VGGLPKEMHLQLC 355

Query: 190 FPLGDMKKESVRDLAREMG 208
            PL  + K+ VR +  ++G
Sbjct: 356 EPLQWLFKDEVRRVGYQLG 374


>gi|170744674|ref|YP_001773329.1| argininosuccinate synthase [Methylobacterium sp. 4-46]
 gi|168198948|gb|ACA20895.1| Argininosuccinate synthase [Methylobacterium sp. 4-46]
          Length = 413

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 30/141 (21%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
               +  +VV+A SGG+D+S++   L+   G +V+  T                  G+++
Sbjct: 4   PTQKRVQKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEEL 50

Query: 74  YDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRT 123
             ARR  + + +     ++ D  E F    + P   +       Y  G +    +   + 
Sbjct: 51  EPARRKAELLGIKPENIFIEDLREEFVRDYVFPMFRANAQYEGVYLLGTSIARPLIAKKQ 110

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           +       +  ++GAD +A G
Sbjct: 111 I------EIADRVGADAVAHG 125


>gi|126661035|ref|ZP_01732120.1| argininosuccinate synthase [Cyanothece sp. CCY0110]
 gi|126617689|gb|EAZ88473.1| argininosuccinate synthase [Cyanothece sp. CCY0110]
          Length = 400

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   + 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITLAADLGQGDELGPIQA 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D  + F          + A  E+  P      R +    L+    + 
Sbjct: 52  KALKSGAVESLVEDATKEFVTDYAFKAIKANALYESRYPLSTALARPLIAKLLVDAAEKY 111

Query: 137 GADVLATGHYIRSRLYVGDD 156
           GAD +A G   +    V  D
Sbjct: 112 GADAVAHGCTAKGNDQVRFD 131


>gi|70606252|ref|YP_255122.1| GMP synthase [Sulfolobus acidocaldarius DSM 639]
 gi|68566900|gb|AAY79829.1| GMP synthase [Sulfolobus acidocaldarius DSM 639]
          Length = 373

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 30/192 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + + A+SGGVDS+  A L  K  G  VI + +          R+G     +     + 
Sbjct: 21  DGKAIAAVSGGVDSTTAATLTYKLMGDKVIPIII-----DTGFLREGE--VEKVKNMVKN 73

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V     +   V D +E+F  A +   + +    +T        R + +  L  + R+  A
Sbjct: 74  V-----LPLQVVDAKEKFLRA-LEGLSDAEEKRKTF-------RKIFYDILSELVRKYNA 120

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             L  G      +      K +  +   + ++ ++ +            +  PL D+ K 
Sbjct: 121 KYLIQGTIAADWVETQGGIKTQHNVLVQLGIDTEREWGF---------KVVEPLADLYKN 171

Query: 199 SVRDLAREMGLD 210
            VR L   +GL 
Sbjct: 172 EVRKLGEYLGLP 183


>gi|312129946|ref|YP_003997286.1| gmp synthase, large subunit [Leadbetterella byssophila DSM 17132]
 gi|311906492|gb|ADQ16933.1| GMP synthase, large subunit [Leadbetterella byssophila DSM 17132]
          Length = 508

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
             +VV+ +SGGVDSSV A L+ + 
Sbjct: 212 QDKVVMGLSGGVDSSVAALLIHKA 235


>gi|5814295|gb|AAD52163.1|AF144879_2 unknown [Leptospira interrogans]
          Length = 380

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 33/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS +A L K+      G+   L++       + +    + + D       +
Sbjct: 73  ILGISGGVDSSYLAYLAKKK----FGLRPLLFHVDAGWNSQEAVNNIEKIVDGL----KL 124

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   V ++EE  ++  +  F +     +TP         V F+ L +   + G   +  
Sbjct: 125 DLITEVVNWEEM-KDLQLSFFKAGVPHLDTPQ------DHVFFASLYNYCAKHGFHYILN 177

Query: 144 GHYIRSR--------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF----- 190
           G    +          Y   D ++ + + +     + +++ L    + ++    F     
Sbjct: 178 GGNYSTECIREPLEWHYHASDLRQLKDIHKKFGKRKLKTFPLAGIFKYKIYYRIFKKLKV 237

Query: 191 --PLGD--MKKES-VRDLAREMG 208
             PL      KE  +R+L  + G
Sbjct: 238 VQPLNYVPYTKEEAIRELETKFG 260


>gi|325678703|ref|ZP_08158312.1| PP-loop family protein [Ruminococcus albus 8]
 gi|324109604|gb|EGC03811.1| PP-loop family protein [Ruminococcus albus 8]
          Length = 290

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 24/131 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  ++ V +SGG DS ++A  +KR         LQ Y+             G +  + ++
Sbjct: 35  EGDKIAVCISGGKDSMMMAMCMKR---------LQRYSKVPFDVEYIVMDPGYNAENRQK 85

Query: 79  V---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +      + +   +FD        +     +         PC  C   ++   L    ++
Sbjct: 86  IIDNAAKLEIPVRIFD------TKIFDSVVNVRQ-----NPCYLC-ARMRRGYLYKNAQE 133

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 134 LGCNKIALGHH 144


>gi|144898595|emb|CAM75459.1| Argininosuccinate synthase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+   Y    VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILRWLQDQ-YQCEVVTF-----------TADLGQGEELEPARKKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P   +       Y  G +    +   R +      
Sbjct: 54  QLMGIKDENIFIDDLREEFVRDFVFPMFRANALYEGVYLLGTSIARPLISKRQI------ 107

Query: 131 SVTRQLGADVLATG 144
            +  Q+GAD ++ G
Sbjct: 108 EIANQVGADAVSHG 121


>gi|325280659|ref|YP_004253201.1| PP-loop domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312468|gb|ADY33021.1| PP-loop domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 244

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 35/134 (26%)

Query: 22  RVVVAMSGGVDSS----VVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R++V +SGG DS     V+A   +  +  Y V+   + +           +     D   
Sbjct: 33  RILVGVSGGKDSLALLEVLALRARDPKQNYTVVAAHIAV----------ENVAYEVDGEY 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSV 132
            R+ C+ + V               I    ++    ++  P       NR      L  +
Sbjct: 83  VRQFCEQLGVEF-------------IHRTIATAVKEDSGKPVCFVCSWNRR---KTLFGI 126

Query: 133 TRQLGADVLATGHY 146
            ++ G + LA GH+
Sbjct: 127 AKEYGCNKLALGHH 140


>gi|296421316|ref|XP_002840211.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636425|emb|CAZ84402.1| unnamed protein product [Tuber melanosporum]
          Length = 493

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 25/191 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+       IG             R   C         + + + 
Sbjct: 194 VIGAVSGGVDSTVAAKLMHEA----IGDRFHAILVDNGVMRLNECKTVH-----KTLTEG 244

Query: 83  INVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + ++  V D  E F      V  P       G T +                V R+ G  
Sbjct: 245 LGINLTVVDASEEFLGKLKGVEDPEKKRKIIGNTFIEVFQRESE-------RVMRESGG- 296

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             A    ++  LY   D         P    +            +L  L  PL ++ K+ 
Sbjct: 297 --AVDFLLQGTLY--PDVIESISFKGPSATIKTHHNVGGLLENMKL-KLIEPLRELFKDE 351

Query: 200 VRDLAREMGLD 210
           VR L  ++G+ 
Sbjct: 352 VRVLGTKLGIP 362


>gi|289580657|ref|YP_003479123.1| PP-loop domain protein [Natrialba magadii ATCC 43099]
 gi|289530210|gb|ADD04561.1| PP-loop domain protein [Natrialba magadii ATCC 43099]
          Length = 319

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-R 77
           V+ +SGG DS V+  +L          +++G+T+           +G         DA  
Sbjct: 57  VIGLSGGKDSVVLTQILHETFAKDPRIELVGLTIH----------EGIEGYRDKSLDACV 106

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            + D +++ H V  YE+ F    + V+          E    C  C    +   L     
Sbjct: 107 ELSDDLDIRHEVVSYEDEFGIQMDDVVEDD------PENMAACAYCGVFRR-DILSRYAD 159

Query: 135 QLGADVLATGHYI 147
            LGAD+L TGH +
Sbjct: 160 DLGADLLLTGHNL 172


>gi|222100158|ref|YP_002534726.1| Argininosuccinate synthase [Thermotoga neapolitana DSM 4359]
 gi|254807534|sp|B9K8S7|ASSY_THENN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|221572548|gb|ACM23360.1| Argininosuccinate synthase [Thermotoga neapolitana DSM 4359]
          Length = 409

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 52/208 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   G++VI     +         K           A +V  
Sbjct: 4   KVVLAYSGGLDTSVILKWLCEKGFEVIAYVANVGQKDDFEAIKEKALKTG----ASKV-- 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139
                 Y+ D    F   V                         F+ LL      G    
Sbjct: 58  ------YIEDLRREF---VTDY---------------------IFTALLGNALYEGRYLL 87

Query: 140 --VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPLGD 194
              +A     + ++ + +    + +         DQ  F    T   L     +  P  D
Sbjct: 88  GTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRF--ELTYAALNPNLKVISPWKD 145

Query: 195 MK-------KESVRDLAREMGLDIADKS 215
            +       +  + + ARE G+ +    
Sbjct: 146 PEFLSRFKGRTDLINYAREKGIPVKVSK 173


>gi|83591106|ref|YP_431115.1| argininosuccinate synthase [Moorella thermoacetica ATCC 39073]
 gi|119361293|sp|Q2RG67|ASSY_MOOTA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|83574020|gb|ABC20572.1| argininosuccinate synthase [Moorella thermoacetica ATCC 39073]
          Length = 408

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 68/209 (32%), Gaps = 53/209 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   LK   GY+VI V             +G      +    +   
Sbjct: 10  KVVLAYSGGLDTSIIIPWLKETYGYEVIAV--------AVDVGQGEELEPLEEKAIKSGA 61

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
             I    Y+ D ++ F    I P           Y  G +        R +    L+ V 
Sbjct: 62  SKI----YILDKKKEFVEEYIWPTLKAGAVYEGKYLLGTSFA------RPLIAKCLVEVA 111

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ--QLCDLRFP 191
            Q GA  +A G                           DQ  F         QL  +  P
Sbjct: 112 AQEGATAVAHG---------------------ATGKGNDQVRFELGVKALNPQL-KVIAP 149

Query: 192 --LGDMK-KESVRDLAREMGLDIADKSDS 217
             + +++ +E   D A   G+ +    D 
Sbjct: 150 WRIWNIRSREEAMDYAAARGIPVPVTKDR 178


>gi|288561212|ref|YP_003424698.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288543922|gb|ADC47806.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 285

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 36/155 (23%)

Query: 7   TRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
           +R+N+L  D     +  ++ +A+SGG DS +    LK             Y        +
Sbjct: 14  SRINNLIDDYQLIKEGEKIAIALSGGKDSVLTLHALK------------NYKDSADFDFE 61

Query: 65  ---------GSCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGE 112
                            +  A      + +      ++E      + +   F S+     
Sbjct: 62  LVAILVDEGIDGYRQHGIDAAVNNAQLLEIPLIQKSFKEEEGFALDDIYSYFKSAC---- 117

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
             +PC    R +    L     ++GAD +ATGH +
Sbjct: 118 --IPCGVFRRNI----LNKTAYEIGADKIATGHNL 146


>gi|206890265|ref|YP_002248293.1| NAD+ synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742203|gb|ACI21260.1| NAD+ synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 571

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV + +SGG+DSS VA +     G D V GV +                + +   D   +
Sbjct: 318 RVCLGLSGGIDSSFVALVATDALGSDRVTGVFM-----------PSRYTSRESKEDVYEL 366

Query: 80  CDTINVSHYVFDYEERFRN 98
              + +       +E F  
Sbjct: 367 VKNLGIELIEISIDEIFEE 385


>gi|170077022|ref|YP_001733660.1| hypothetical protein SYNPCC7002_A0394 [Synechococcus sp. PCC 7002]
 gi|169884691|gb|ACA98404.1| conserved hypothetical protein, TIGR00268 [Synechococcus sp. PCC
           7002]
          Length = 288

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 45/196 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R ++A SGG+DS++VA +     +DV+G      +   A          +++  A     
Sbjct: 19  RALIAYSGGIDSTLVAKVA----HDVLG------DRAVAVTAVSPSLLPEELEAAIAQAK 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           TI + H   +  E      +               C  C   +    L  +  + G   +
Sbjct: 69  TIGIVHEQVETHEMDNPNYVS---------NPANRCYFCKSEL-HDTLKPLALERGYPYV 118

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
             G      +   D    R  +    +                    R PL +  + K  
Sbjct: 119 IDG------VNADDLQDYRPGIQAAKERG-----------------ARSPLAEVGIAKLE 155

Query: 200 VRDLAREMGLDIADKS 215
           VR++++++GL   DK 
Sbjct: 156 VREISKQLGLPWWDKP 171


>gi|153953061|ref|YP_001393826.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853712|ref|YP_002470834.1| hypothetical protein CKR_0369 [Clostridium kluyveri NBRC 12016]
 gi|189038909|sp|A5N597|QUEC_CLOK5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764326|sp|B9DYU5|QUEC_CLOK1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|146345942|gb|EDK32478.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219567436|dbj|BAH05420.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 226

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDV 47
           + VV +SGG+DS+ V  L K  GY+V
Sbjct: 2  KKAVVLLSGGLDSTTVLYLAKSQGYEV 28


>gi|87301537|ref|ZP_01084377.1| Argininosuccinate synthase [Synechococcus sp. WH 5701]
 gi|87283754|gb|EAQ75708.1| Argininosuccinate synthase [Synechococcus sp. WH 5701]
          Length = 407

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++  +  RVV+A SGGVD+SV    LK++           +   +          G ++ 
Sbjct: 4   EQGARAKRVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELE 52

Query: 75  DARRVCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
             R+       S  +  D  + F      P   + A  E   P      R +    L+ V
Sbjct: 53  PIRQKALDSGASQSIVGDLIDPFIREFAFPAIRANALYEGRYPLSTALARPLIARRLVEV 112

Query: 133 TRQLGADVLATG 144
            R+ GAD +A G
Sbjct: 113 AREQGADAVAHG 124


>gi|71031446|ref|XP_765365.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352321|gb|EAN33082.1| hypothetical protein, conserved [Theileria parva]
          Length = 376

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 99/289 (34%), Gaps = 50/289 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL---KRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQD-V 73
              RV V +SGG DSSV+A +L   K   G D        +N       +G      D +
Sbjct: 48  SGDRVCVGVSGGKDSSVLAHVLSKIKETYGLD--------WNLYLLGVDEGIKGYRDDSL 99

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + + D   +   +  ++ERF    + V+         G+    C  C    +   +L
Sbjct: 100 KVVKSMHDKYKIELKILSFKERFGFSMDQVVK------LIGKKGN-CTVCGSFRR--QML 150

Query: 131 SV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR-------PMDLERDQSYFLFATTQ 182
            +  R   A+VL TGH              R  + +       P D   D +    +  +
Sbjct: 151 EIGARIFEANVLCTGHNADDMAETVLLNLFRGDLLKLTSNSNSPSDTTVDNTS--ESVNK 208

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKS--DSQDICFVQQGKYFDVVKRINAGIA 240
            ++  ++ PL    ++ +   AR + LD        S +        +   ++ IN  I 
Sbjct: 209 VRIRRVK-PLKYSFEKEIVLYARYLSLDYFSTECIYSPEAYRGHMRSFIKNLELINPQII 267

Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSR 289
           L  +I+         H G     IG+  G          +  +D  ++ 
Sbjct: 268 L--NIIRSGDNFKSDHRG-----IGEVTGRNYCQ-----ICGIDSVNNI 304


>gi|306819315|ref|ZP_07453024.1| GMP synthase [Mobiluncus mulieris ATCC 35239]
 gi|304647893|gb|EFM45209.1| GMP synthase [Mobiluncus mulieris ATCC 35239]
          Length = 528

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 64/208 (30%), Gaps = 57/208 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDSSV AAL+ R  G  +  +            RKG     +  Y       
Sbjct: 226 VICGLSGGVDSSVAAALVHRAIGDQLTCIF-----VDHGLLRKGEKEQVEHDY-----AA 275

Query: 82  TINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETP--LPCVDCNRTVKF 126
            + +     D   RF  A   V  P          F  S+ A +           + VKF
Sbjct: 276 GMGIRVKYVDESARFLTALKGVTEPEQKRKIIGREFIRSFEAAQRAVIAEAGAAGKEVKF 335

Query: 127 ---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                L   V    G    A      +   + +D K                        
Sbjct: 336 LVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLKFE---------------------- 373

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL  + K+ VR L RE+G+ 
Sbjct: 374 -----LIEPLRQLFKDEVRALGRELGVP 396


>gi|302784632|ref|XP_002974088.1| hypothetical protein SELMODRAFT_100488 [Selaginella moellendorffii]
 gi|300158420|gb|EFJ25043.1| hypothetical protein SELMODRAFT_100488 [Selaginella moellendorffii]
          Length = 349

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            K  RV +A SGG DS+V+A +L      +D  G+ L L +  +      S      +  
Sbjct: 48  KKGERVAIAASGGKDSTVLAHILSELNTRHD-YGLDLFLLSIDEG----ISGYRDDSLET 102

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +R      +   V  Y+E +     +               C  C    +   L     
Sbjct: 103 VKRNEVQYGIPLKVLSYKELYGWT--MDEIVKEIGR---KNNCTFCGVFRR-QALDRGAA 156

Query: 135 QLGADVLATGHYI 147
            + AD +ATGH  
Sbjct: 157 LMKADKMATGHNA 169


>gi|298492972|ref|YP_003723149.1| argininosuccinate synthase ['Nostoc azollae' 0708]
 gi|298234890|gb|ADI66026.1| argininosuccinate synthase ['Nostoc azollae' 0708]
          Length = 399

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKKE-----------WGVEEVITLAADLGQGDELELVRE 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                      V D ++ F      P   + A  E   P      R +    L+   ++ 
Sbjct: 52  KALKSGASESLVADVKKSFVTEYAFPAIQANALYENRYPLGTALARPLIAQILVETAQKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|126726430|ref|ZP_01742271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
 gi|126704293|gb|EBA03385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
          Length = 36

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385
           V+   +E G+++GQACVFY +DS   R+ GGG I  
Sbjct: 2   VELITAEEGISAGQACVFYDADS--TRIFGGGWIKK 35


>gi|323495685|ref|ZP_08100755.1| argininosuccinate synthase [Vibrio sinaloensis DSM 21326]
 gi|323319152|gb|EGA72093.1| argininosuccinate synthase [Vibrio sinaloensis DSM 21326]
          Length = 405

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 17/171 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
             ++   SGG+DSS V  LLK     V  + + L +  + S               R + 
Sbjct: 18  KHILTLFSGGLDSSYVLELLKNSQAKVTALAVDLGDGIEESSL-------------RLIT 64

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
           D       + D  + F    +V    + A      P     +R +     L +   L  D
Sbjct: 65  DHYGFDLKIIDARQEFVEHSLVSAIQAQALYLGDYPVSSSLSRPIIVKKALELAEILECD 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            +              +G   +             Y   A  ++      F
Sbjct: 125 AIIHTANQSQNSLRRLNGAIEKAGFTGYYGS---PYEYSALPREDKAKALF 172


>gi|307718371|ref|YP_003873903.1| PP-loop domain-containing protein [Spirochaeta thermophila DSM
           6192]
 gi|306532096|gb|ADN01630.1| PP-loop domain protein [Spirochaeta thermophila DSM 6192]
          Length = 276

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 75/230 (32%), Gaps = 45/230 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVA--ALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  RV++ +SGG DS V+A    L+R      Y +  V L  +     S  +        
Sbjct: 40  EGDRVLLGISGGKDSLVMALVLSLRRRWLPIHYHLEAVHL-NWEEYPISDEES------- 91

Query: 73  VYDARRVC--DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              AR     + I+V              +       +  G     C  C R  K   L 
Sbjct: 92  ---ARLAAYFEAIDVPF----------TQITTTMFPGHYDG-QFN-CYLCARNRK-RHLF 135

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  ++    +LA GH++   +         R     M     Q +F    T      L  
Sbjct: 136 TYMKEYDIPILALGHHLDDIVETTLINMAMRGRLFTMMPV--QPFFGGLFT------LIR 187

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           PL ++ +  VR    ++GL +         C  +       VK +   +A
Sbjct: 188 PLCEVPESQVRTAVEKLGLPVVKPD-----CPYKDTNLRLRVKPLVEQLA 232


>gi|269977053|ref|ZP_06184027.1| GMP synthase [glutamine-hydrolyzing] [Mobiluncus mulieris 28-1]
 gi|307700094|ref|ZP_07637142.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Mobiluncus mulieris FB024-16]
 gi|269934884|gb|EEZ91444.1| GMP synthase [glutamine-hydrolyzing] [Mobiluncus mulieris 28-1]
 gi|307614744|gb|EFN93965.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Mobiluncus mulieris FB024-16]
          Length = 528

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 64/208 (30%), Gaps = 57/208 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDSSV AAL+ R  G  +  +            RKG     +  Y       
Sbjct: 226 VICGLSGGVDSSVAAALVHRAVGDQLTCIF-----VDHGLLRKGEKEQVEHDY-----AA 275

Query: 82  TINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETP--LPCVDCNRTVKF 126
            + +     D   RF  A   V  P          F  S+ A +           + VKF
Sbjct: 276 GMGIRVKYVDESARFLTALKGVTEPEQKRKIIGREFIRSFEAAQRAVIAEAGAAGKEVKF 335

Query: 127 ---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                L   V    G    A      +   + +D K                        
Sbjct: 336 LVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLKFE---------------------- 373

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL  + K+ VR L RE+G+ 
Sbjct: 374 -----LIEPLRQLFKDEVRALGRELGVP 396


>gi|288931458|ref|YP_003435518.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
 gi|288893706|gb|ADC65243.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
          Length = 290

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 28/136 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVA-ALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            +  +V+ A+SGG DS V   A LK      G  +  + + L          G     + 
Sbjct: 42  KRGEKVLAAISGGKDS-VAMIAALKELEDKLGIKLEALHINL----------GIGEYSRK 90

Query: 73  VYDA-RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             +  R+VC+ ++V  +V    E                      C  C    ++  +  
Sbjct: 91  SEEVSRKVCEELDVPLHVVYLSE------YGFTIGDVKR----KACSVCGNAKRY-IMNR 139

Query: 132 VTRQLGADVLATGHYI 147
             R+ G DV+ATGH  
Sbjct: 140 FAREEGFDVIATGHCA 155


>gi|323706134|ref|ZP_08117703.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534578|gb|EGB24360.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 381

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 55/219 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + VV +SGG+DS V A ++ + G  +  V          S       A   V D   +
Sbjct: 171 NGKAVVLLSGGIDSPVAAWMMMKRGVKIEAVYFH-------SPPYTQERAKDKVID---L 220

Query: 80  CDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---- 130
           C  +     +V  +V ++ + F+ A+                C     T+    ++    
Sbjct: 221 CKKLSEYGQDVYLHVVNFTD-FQLAIYDK-------------CPPKLTTIIMRRMMMRVA 266

Query: 131 -SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            ++  + GA  L TG  +        +                  Y   A T   +    
Sbjct: 267 ENIALKYGAKALITGESLGQVASQTIESL----------------YCTNAVTHMPVFR-- 308

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDIC--FVQQG 226
            PL  M K  + ++++++G         +D C  FV + 
Sbjct: 309 -PLIGMDKSEIVEISKKIGTYDISIRPYEDCCTIFVPKH 346


>gi|282162684|ref|YP_003355069.1| hypothetical protein MCP_0014 [Methanocella paludicola SANAE]
 gi|282154998|dbj|BAI60086.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 195

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 38/125 (30%), Gaps = 26/125 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRV 79
           M+V V  SGG DSS+ A LL    +DV  VT               C  G      A R 
Sbjct: 1   MKVRVLYSGGQDSSLSAVLL-EPFFDVELVT---------------CSFGSASWRHAGRA 44

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I     V           I      Y       P    N  V    L +  +  G  
Sbjct: 45  AEAIGFPFRVLKLSPEVMEGCIDLML-KYG-----YPRYGIN-YVHLKALEAAAK--GGG 95

Query: 140 VLATG 144
            +A G
Sbjct: 96  YVADG 100


>gi|261403032|ref|YP_003247256.1| hypothetical protein Metvu_0916 [Methanocaldococcus vulcanius M7]
 gi|261370025|gb|ACX72774.1| conserved hypothetical protein [Methanocaldococcus vulcanius M7]
          Length = 261

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 29/176 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           ++E  +  ++ +++ P   R V+A SGGVDS+  A + K            +++    S 
Sbjct: 48  LNEDPQFFNVSIEEKP---RAVIAFSGGVDSTTSAVIAKN-----------IFDIEAVSC 93

Query: 63  RKGSCCAGQDVYDARRVCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                   +  +D   +   IN  +     D E+ + + VI              PC  C
Sbjct: 94  YSKYIMTEKLKHDIDALSKKINLKIRFLDIDLEDVY-DGVIN---------CKFHPCGRC 143

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYI--RSRLYVGDDGKRRRIMCRPMDLERDQS 174
           ++ +    +L        + +  G  +    +    D    R  +     L +D+ 
Sbjct: 144 HK-IIERAVLDYAISSDVEYIIFGDLLAFGCQSIYWDGNVFRFNLPSFFALTKDEE 198


>gi|227832313|ref|YP_002834020.1| GMP synthase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183830|ref|ZP_06043251.1| GMP synthase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453329|gb|ACP32082.1| GMP synthase [Corynebacterium aurimucosum ATCC 700975]
          Length = 522

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 24/193 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ R +  +SGGVDS+V AAL++R  G  +  V     +       +             
Sbjct: 221 EEGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF----- 272

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D  E F N +                 +       F   +      G
Sbjct: 273 -VAST-GAKLITADEREAFLNKLAGVTEPEAKRKAIGAEFIRS-----FERAVDQALD-G 324

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D             V   G       +           +         +L  PL  + K
Sbjct: 325 QDAAFLVQGTLYPDVVESGGGDGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFK 377

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 378 DEVRAVGRELGLP 390


>gi|119488897|ref|ZP_01621859.1| hypothetical protein L8106_20108 [Lyngbya sp. PCC 8106]
 gi|119455058|gb|EAW36200.1| hypothetical protein L8106_20108 [Lyngbya sp. PCC 8106]
          Length = 274

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 51/213 (23%)

Query: 1   MVVSEATRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           MV+ +  +L SL      ++M+  ++A SGG+DS++VA +     YDV+G      +   
Sbjct: 1   MVIQKLEQLQSLF-----QEMKQALIAYSGGIDSTLVAKIA----YDVLG------DRAL 45

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A          +D+ DAR     I + H      E                      C  
Sbjct: 46  AVTAVSPSLLPEDLEDARIQAVEIGIRHQEISTHEMENPNYTSNPV---------NRCYF 96

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
           C   +    L  +  Q     +  G      +   D    R  +    +           
Sbjct: 97  CKSEL-HDTLKPLAVQWKYPYIVDG------VNADDLRDYRPGIQAATERG--------- 140

Query: 180 TTQQQLCDLRFPLGD--MKKESVRDLAREMGLD 210
                   +R PL +  + K  VR+L++ +GL 
Sbjct: 141 --------VRSPLAEVGVSKAEVRELSKLLGLS 165


>gi|331000424|ref|ZP_08324099.1| protein ExsB [Parasutterella excrementihominis YIT 11859]
 gi|329571756|gb|EGG53436.1| protein ExsB [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          M+ +V  SGGVDS+   A+     G + + VTL        S   G     + +  A++V
Sbjct: 1  MKAIVLSSGGVDSTTCLAMAVHELGKENV-VTL--------SFEYGQRHCKE-LESAQKV 50

Query: 80 CDTINVSHYVFDYEERFR 97
           D   V H VF+  + F 
Sbjct: 51 ADYYGVRHVVFNLTQIFS 68


>gi|319442945|ref|ZP_07992101.1| GMP synthase [Corynebacterium variabile DSM 44702]
          Length = 512

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 55/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V     +     K +              
Sbjct: 208 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRKGEREQVETDF------ 258

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F + +                 +          L         
Sbjct: 259 VAAT-GAKLVTVDEREAFLSKLAGVSDPEAKRKAIGAEFIRSFERAVAGVLGDAPEGSTV 317

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 318 DFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFTLVEPLRLLFKD 368

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 369 EVRAVGRELGLP 380


>gi|313677722|ref|YP_004055718.1| gmp synthase, large subunit [Marivirga tractuosa DSM 4126]
 gi|312944420|gb|ADR23610.1| GMP synthase, large subunit [Marivirga tractuosa DSM 4126]
          Length = 509

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           +L +   + +VV+ +SGGVDSSV A L+    +  IG
Sbjct: 206 ELKEQLGNDKVVLGLSGGVDSSVAAMLI----HHAIG 238


>gi|305663003|ref|YP_003859291.1| GMP synthase (glutamine-hydrolyzing) [Ignisphaera aggregans DSM
           17230]
 gi|304377572|gb|ADM27411.1| GMP synthase (glutamine-hydrolyzing) [Ignisphaera aggregans DSM
           17230]
          Length = 520

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 78/218 (35%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +D +V+ A+SGG+DS+  A L+K+  G  ++ V                     +  +  
Sbjct: 224 EDEKVLCAVSGGIDSTTTALLVKKAIGDRLVAVF-----------VNHGLLREGEAEEVL 272

Query: 78  RVCDTINV-SHYV------FD------------------YEERFRNAVIVPFASSYAAGE 112
            +   + +   Y+       D                  + + F++ V       + A  
Sbjct: 273 NMLRNLGINPIYIDASKMFLDALKGVRDCEEKRRIIGELFAKIFKDIVESDKFIKWLAQG 332

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           T  P V  +  V            GAD + + H                           
Sbjct: 333 TTYPDVIESGFV-----------PGADRIKSHHN-------------------------- 355

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +          L  P+  + K+ VR +A  +G+ 
Sbjct: 356 ----VAGLPSWLGLKLLEPIKYLYKDEVRAIALRLGVP 389


>gi|264681434|ref|NP_001161112.1| asparagine synthetase [Sus scrofa]
 gi|262036930|dbj|BAI47600.1| asparagine synthetase [Sus scrofa]
          Length = 561

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           AR+V D I   H+   +       V+     S    +
Sbjct: 299 ARKVADHIGSEHHEVLFNSEEGIQVLDEVIFSLETYD 335


>gi|269955513|ref|YP_003325302.1| GMP synthase large subunit [Xylanimonas cellulosilytica DSM 15894]
 gi|269304194|gb|ACZ29744.1| GMP synthase, large subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 524

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV+ A+SGGVDS+V AAL+++  G  +  V                    + +   R   
Sbjct: 221 RVICALSGGVDSAVAAALVQKAVGDQLTCVH--------VDHGLMRAGEVEQIE--RDFV 270

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +  V   V D +ERF  A   V  P       G   +   +  +     D      + G
Sbjct: 271 ASTGVRLIVRDEKERFLTALAGVTDPETKRKIIGREFIRVFEDAQRQIIKD----AGEAG 326

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            DV            V   G       +           +         +L  PL  + K
Sbjct: 327 EDVKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPDDLQFELVEPLRALFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+G+ 
Sbjct: 380 DEVRAVGRELGIP 392


>gi|315605031|ref|ZP_07880085.1| GMP synthase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313310|gb|EFU61373.1| GMP synthase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 526

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 65/200 (32%), Gaps = 41/200 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV AAL+ R  G  +    +   +       +     G           
Sbjct: 224 VICALSGGVDSSVAAALVHRAVGDQLTCFFI---DHGLLRAGEREQVEGDY-------AR 273

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            + +     D  ERF +A          AG T  P  +  R +   +        ++   
Sbjct: 274 GMGIRVITCDESERFLSA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQKQVI 321

Query: 139 DVL--ATGHY------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + +  A G              V   G       +           +    +    +L  
Sbjct: 322 EEVGAAGGEVKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDMTFELVE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR + RE+GL 
Sbjct: 375 PLRTLFKDEVRAVGRELGLP 394


>gi|297734389|emb|CBI15636.3| unnamed protein product [Vitis vinifera]
          Length = 422

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+++ G +V+  T          +        ++   A   C
Sbjct: 101 KVVLAYSGGLDTSVIVPWLRQNYGCEVVCFT------ADVGQGIKELEGLEEKAKASGAC 154

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 155 Q-----LVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDVA 203

Query: 134 RQLGADVLATG 144
           +++GAD ++ G
Sbjct: 204 KEVGADAVSHG 214


>gi|225456274|ref|XP_002283539.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 497

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+++ G +V+  T          +        ++   A   C
Sbjct: 101 KVVLAYSGGLDTSVIVPWLRQNYGCEVVCFT------ADVGQGIKELEGLEEKAKASGAC 154

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   V D +E F    I P           Y  G +        R V    ++ V 
Sbjct: 155 Q-----LVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMA------RPVIAKAMVDVA 203

Query: 134 RQLGADVLATG 144
           +++GAD ++ G
Sbjct: 204 KEVGADAVSHG 214


>gi|219120979|ref|XP_002185721.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582570|gb|ACI65191.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 418

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++++A SGG+D+SV+   L   G+DVI                      +D    +  
Sbjct: 5   KPKLLLAYSGGLDTSVILKWLSEKGFDVIAF------------CANVGQHEEDFSAVKAK 52

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGET-PLPCVDCNRTVKFSDLL 130
            ++       + D  + F +  ++            Y  G +   PC+         +++
Sbjct: 53  AESCGATKCVISDLRKEFVDDYVLEAIKCNAIYEGRYLLGTSIARPCIA-------KEMI 105

Query: 131 SVTRQLGADVLATG 144
            +  + GA  +A G
Sbjct: 106 RIAHEEGATFIAHG 119


>gi|158299176|ref|XP_319294.4| AGAP010139-PA [Anopheles gambiae str. PEST]
 gi|157014240|gb|EAA13830.4| AGAP010139-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           + +V++ +SGGVDS+V AALL+       VI V +                   +  +  
Sbjct: 230 NSKVLLLVSGGVDSTVCAALLRHALKPDQVIAVHIDNGF-----------MRLNESANVE 278

Query: 78  RVCDTINVSHYVFDYEERFRNAVIV-------PFASSYAAGETPLPC----VDCNRTVKF 126
           +    + V  +V +   +F                 +    +T  P     +  +  VK 
Sbjct: 279 KSLRELGVDLFVKNAIYKFMKGTTTIKLPGSLYNQDTQMLCQTISPEDKRKIIGDVFVKV 338

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLERDQSYFLFATTQQQL 185
           S+   V R++  +  A   Y+       D  +    +     D  +          + + 
Sbjct: 339 SN--DVLREMNLN--ADEVYLAQGTLRPDLIESASTLVSAKADTIKTHHNDTELIRKLRE 394

Query: 186 C-DLRFPLGDMKKESVRDLAREMGLD 210
              +  PL D  K+ VR L   +GL 
Sbjct: 395 AGRVIEPLRDFHKDEVRQLGYSLGLP 420


>gi|312897992|ref|ZP_07757401.1| argininosuccinate synthase [Megasphaera micronuciformis F0359]
 gi|310620917|gb|EFQ04468.1| argininosuccinate synthase [Megasphaera micronuciformis F0359]
          Length = 423

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 37/138 (26%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+SV+   LK   +G +VI V                C       D + 
Sbjct: 21  KKIVLAYSGGLDTSVIIPWLKENYNGSEVIAV----------------CADVGQPDDFKA 64

Query: 79  VCDTINV----SHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKF 126
           V +   +      Y+ D ++ F    + P           Y  G +   P +        
Sbjct: 65  VEEKAYMSGADKVYIADVKKEFLENYVWPVVKAGCVYEGKYLLGTSFARPLISA------ 118

Query: 127 SDLLSVTRQLGADVLATG 144
             L+ + ++ GAD +  G
Sbjct: 119 -KLVEIAKKEGADAICHG 135


>gi|256004136|ref|ZP_05429120.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|255991884|gb|EEU01982.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
          Length = 218

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 28/131 (21%)

Query: 22  RVVVAMSGGVDS---SVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS    V    LK      +++  +TL                   D+  
Sbjct: 7   RIAVGVSGGKDSLTLLVALRQLKNFLPVKFELKAITL------------TMGIGEVDLSP 54

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R +C+ I+VS+ V          +I          +   PC  C   ++   L +  ++
Sbjct: 55  VRELCERIDVSYTV-------EETLIGKIVFEERKEK--NPCSLC-ANLRRGALHNTAKR 104

Query: 136 LGADVLATGHY 146
           LG + +A  H+
Sbjct: 105 LGCNKVALAHH 115


>gi|157813138|gb|ABV81314.1| putative GMP synthetase [Mastigoproctus giganteus]
          Length = 196

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   +  VI + +     RK    +               
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALKEDQVIAIHIDNGFMRKNESLQVEQSL---------- 94

Query: 80  CDTINVSHYVFDYEERF 96
              + +   V +    F
Sbjct: 95  -KQLGLKMKVINASHSF 110


>gi|17229977|ref|NP_486525.1| NAD synthetase [Nostoc sp. PCC 7120]
 gi|17131577|dbj|BAB74184.1| NH(3)-dependent NAD(+) synthetase [Nostoc sp. PCC 7120]
          Length = 566

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 24/129 (18%)

Query: 23  VVVAMSGGVDSSV-----VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           VV+ +SGG+DS++      AAL K    +V GV +                +   + DA 
Sbjct: 300 VVLGLSGGIDSALVATIATAALGKE---NVFGVLM-----------PSPYSSEHSISDAL 345

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQ 135
            + D + +   +    E  ++           AG T     + N    ++ + L+++  +
Sbjct: 346 ALADNLGIKTQILPIGELMQS--FDQSLVELFAG-TEFGLAEENIQSRIRGNLLMAIANK 402

Query: 136 LGADVLATG 144
            G  +L+TG
Sbjct: 403 FGYLLLSTG 411


>gi|125974666|ref|YP_001038576.1| ATPase [Clostridium thermocellum ATCC 27405]
 gi|125714891|gb|ABN53383.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium thermocellum ATCC 27405]
 gi|316941791|gb|ADU75825.1| PP-loop domain protein [Clostridium thermocellum DSM 1313]
          Length = 237

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 28/131 (21%)

Query: 22  RVVVAMSGGVDS---SVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+ V +SGG DS    V    LK      +++  +TL                   D+  
Sbjct: 26  RIAVGVSGGKDSLTLLVALRQLKNFLPVKFELKAITL------------TMGIGEVDLSP 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R +C+ I+VS+ V          +I          +   PC  C   ++   L +  ++
Sbjct: 74  VRELCERIDVSYTV-------EETLIGKIVFEERKEK--NPCSLC-ANLRRGALHNTAKR 123

Query: 136 LGADVLATGHY 146
           LG + +A  H+
Sbjct: 124 LGCNKVALAHH 134


>gi|302837546|ref|XP_002950332.1| argininosuccinate synthase [Volvox carteri f. nagariensis]
 gi|300264337|gb|EFJ48533.1| argininosuccinate synthase [Volvox carteri f. nagariensis]
          Length = 440

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 28/143 (19%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCA 69
           S+    + K  +VV+A SGG+D+S++   L+   G +V+  T                  
Sbjct: 30  SVQAAASGKVKKVVLAYSGGLDTSIILKWLQDTYGCEVVTFT-------------ADLGQ 76

Query: 70  GQDVYDARRVCDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCN 121
           G+++  AR   + + V      D  E F    + P          +Y  G +    +   
Sbjct: 77  GEELEPARAKAEKMGVKQIFIDDLREEFVRDYVFPMFRANALYEGTYLLGTSIARPLIAK 136

Query: 122 RTVKFSDLLSVTRQLGADVLATG 144
           R +       + +++GAD ++ G
Sbjct: 137 RQI------EIAKEVGADAVSHG 153


>gi|209525771|ref|ZP_03274307.1| NAD+ synthetase [Arthrospira maxima CS-328]
 gi|209493744|gb|EDZ94063.1| NAD+ synthetase [Arthrospira maxima CS-328]
          Length = 565

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DSS+VAA+     G   V+GV +                +   + DA  +
Sbjct: 308 KVVIGLSGGIDSSLVAAIATEALGSQQVLGVLM-----------PSPYSSEHSLEDAFDL 356

Query: 80  CDTINVS 86
            + + +S
Sbjct: 357 ANNLGIS 363


>gi|229002866|ref|ZP_04160742.1| hypothetical protein bmyco0003_57960 [Bacillus mycoides Rock3-17]
 gi|229008540|ref|ZP_04165967.1| hypothetical protein bmyco0002_53200 [Bacillus mycoides Rock1-4]
 gi|228752735|gb|EEM02336.1| hypothetical protein bmyco0002_53200 [Bacillus mycoides Rock1-4]
 gi|228758391|gb|EEM07562.1| hypothetical protein bmyco0003_57960 [Bacillus mycoides Rock3-17]
          Length = 221

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 33/198 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + + +V  SGG DS+       +   +V  VT   YN R   K +  C        A  
Sbjct: 3   SNDKAIVVFSGGQDSTTCLFWAMQQFAEVEAVTF-NYNQR--HKLEIDC--------AAE 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS------SYAAGETPLPCVDCNR--TVKFSDLL 130
           + + + + H V D      N +     +      ++  GE P   VD      + F+ +L
Sbjct: 52  IANELGIKHTVLDMSLL--NQLAPNALTRTDMEITHEEGELPSTFVDGRNLLFLSFAAVL 109

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +Q+GA  + TG           D       CR + ++        +     +     
Sbjct: 110 --AKQVGAHHIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLSMDYPFVIHT-- 157

Query: 191 PLGDMKKESVRDLAREMG 208
           PL  + K     +A E+G
Sbjct: 158 PLMWIDKAETWKIADELG 175


>gi|227876039|ref|ZP_03994158.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843338|gb|EEJ53528.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 528

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 64/208 (30%), Gaps = 57/208 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDSSV AAL+ R  G  +  +            RKG     +  Y       
Sbjct: 226 VICGLSGGVDSSVAAALVHRAVGDQLTCIF-----VDHGLLRKGEKEQVEHDY-----AA 275

Query: 82  TINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETP--LPCVDCNRTVKF 126
            + +     D   RF  A   V  P          F  S+ A +           + VKF
Sbjct: 276 GMGIRVKYVDESARFLTALKGVTEPEQKRKIIGREFIRSFEAAQRAVIAEAGAAGKEVKF 335

Query: 127 ---SDLL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
                L   V    G    A      +   + +D K                        
Sbjct: 336 LVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLKFE---------------------- 373

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                L  PL  + K+ VR L RE+G+ 
Sbjct: 374 -----LIEPLRQLFKDEVRALGRELGVP 396


>gi|83648563|ref|YP_436998.1| NAD synthase [Hahella chejuensis KCTC 2396]
 gi|83636606|gb|ABC32573.1| NAD synthase [Hahella chejuensis KCTC 2396]
          Length = 546

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  A+     G D V  V +                +   + DA    
Sbjct: 290 VVIGLSGGIDSAVTLAVAVDAIGADRVRAVMM-----------PFRYTSQMSLEDAEAEA 338

Query: 81  DTINVSHYVFDYEERF 96
             + V + V   E  +
Sbjct: 339 KALGVQYEVVPIEPIY 354


>gi|323486908|ref|ZP_08092224.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum
           WAL-14163]
 gi|323691956|ref|ZP_08106205.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323399771|gb|EGA92153.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum
           WAL-14163]
 gi|323503965|gb|EGB19778.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 246

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ--DVYDA 76
              ++ V +SGG DS     LL    Y + G+  + Y +             +  D+   
Sbjct: 22  SGDKIAVGISGGKDSLT---LL----YALHGLK-RFYPNEFELSAITVDLGFENFDLSPV 73

Query: 77  RRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           R +C  ++V   V   D         I              PC  C +  K   L    +
Sbjct: 74  RSLCSELSVPFTVVPTD---------IGKILFETRKES--NPCALCAKMRK-GALNETAK 121

Query: 135 QLGADVLATGHY 146
           Q+G + +A  H+
Sbjct: 122 QMGCNKIAYAHH 133


>gi|305663660|ref|YP_003859948.1| thiamine biosynthesis/tRNA modification protein ThiI [Ignisphaera
           aggregans DSM 17230]
 gi|304378229|gb|ADM28068.1| thiamine biosynthesis/tRNA modification protein ThiI [Ignisphaera
           aggregans DSM 17230]
          Length = 409

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 37/191 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV+  +SGG+DS V A    + G +V    + L+N       +G     + + D  R 
Sbjct: 181 EGRVLALISGGIDSPVAAWYAMKRGCEV---HMVLFNIGGDEHVRGGVMVAKALVD--RW 235

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGA 138
                   Y+ D        + +     Y         +   R +  S L     R++ A
Sbjct: 236 AYGYRPKMYIVDIRPIIS-RIALYAPEEYM-------VILLRRYM--SRLAEYLARKIDA 285

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS-YFLFATTQQQLCDLRFPLGDMKK 197
             + TG  +                         Q+   ++   +     +  PL    K
Sbjct: 286 LAIVTGESLGQVAS--------------------QTLSNIYVIEEAVTIPILRPLIGFDK 325

Query: 198 ESVRDLAREMG 208
           + +  +AR +G
Sbjct: 326 DEIVRMARFIG 336


>gi|297192617|ref|ZP_06910015.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151442|gb|EFH31171.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 558

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL+++  G  +  V            RKG     +   D   V
Sbjct: 228 KRAICGLSGGVDSAVAAALVQKAIGSQLTCVY-----VDHGLMRKGETEQVE--KD--FV 278

Query: 80  CDTINVSHYVFDYEERFRNA 99
             T  V   V D  +RF +A
Sbjct: 279 AAT-GVQLKVVDAADRFLDA 297


>gi|254797216|ref|YP_003082057.1| GMP synthase, glutamine-hydrolyzing [Neorickettsia risticii str.
           Illinois]
 gi|254590466|gb|ACT69828.1| GMP synthase, glutamine-hydrolyzing [Neorickettsia risticii str.
           Illinois]
          Length = 519

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 37/191 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDS+V A  +    G  +  +                     +  + +    
Sbjct: 219 VLAAVSGGVDSTVAAKFMHGAIGERLHCIF-----------VDTGLLRKNEANEVKESFS 267

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL-G 137
           ++ +   +    +RF   +             GET                     ++ G
Sbjct: 268 SLGIPLKIVFAADRFFKKLAGVTDPEQKRKIVGETF-----------IQVFEEEALKIQG 316

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + L  G        V + G       +           +    ++    L  P   + K
Sbjct: 317 VEFLLQG---TLYPDVIESGGGGSHTIKSHHN-------VGGLPEKMGLKLLEPFRLLFK 366

Query: 198 ESVRDLAREMG 208
           + VR + R++G
Sbjct: 367 DEVRAIGRQLG 377


>gi|317153245|ref|YP_004121293.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943496|gb|ADU62547.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 336

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 33/144 (22%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLK------RDGYDVIGVTL--QLYNSRKASK 62
           S DL  +     + V +SGG DS   A LL       ++G  V+   L  +L        
Sbjct: 31  SDDLALDMTGKTLAVGLSGGADS--TALLLCLHWLAVKNGGRVVAAHLNHRLRPEADDDA 88

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
           R            A  +C+++ V           R A +   A+S   G       +  R
Sbjct: 89  RW-----------AASLCESLGVPCVA-------READVAALAASRGMG-----LEEAGR 125

Query: 123 TVKFSDLLSVTRQLGADVLATGHY 146
             +++    V  Q  A  +A GH+
Sbjct: 126 EARYTLFADVLAQHEAHFIALGHH 149


>gi|262306031|gb|ACY45608.1| gln amidotransferase [Daphnia magna]
          Length = 193

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR---DGYD---VIGVTLQLYNSRKASKRKGSCCAGQD 72
           +D  V++ +SGGVDS+V AALL +    G D   V  + +     RK    +        
Sbjct: 43  RDKIVLMLVSGGVDSAVCAALLHKALLQGDDSSRVQAIHIDNGFLRKDESEQVVTSL--- 99

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIV-PFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                     + ++  V      F +A        + +   T  P  +  R +     + 
Sbjct: 100 --------QQLGLNLRVVKASLTFYDASTNVHGRQTLSLCRTVNP--EEKRRIIGDTFVK 149

Query: 132 VTRQLGAD 139
           V  +   D
Sbjct: 150 VADRTAND 157


>gi|241667351|ref|ZP_04754929.1| argininosuccinate synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875902|ref|ZP_05248612.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254841923|gb|EET20337.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 418

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 47/206 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R ++  SGG+D+SV+   ++ + G +V+ +T+ +                 ++   ++ 
Sbjct: 19  TRCLLLYSGGLDTSVMLKWIQEEYGVEVVALTIDI------------GQVADNLEQIKQK 66

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFA---SSYAAG---ETPLPCVDCNRTVKFSDLLSV 132
              +  +   V+D ++RF + VI       + Y  G    TPL      R +     + V
Sbjct: 67  AINLGAIDAVVYDAKDRFADEVISKAIKANADYQGGYALSTPL-----GRVIISEIAVEV 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++    V+A G                    +  D  R +SY L             P+
Sbjct: 122 AKKYDCQVVAHG-----------------CTGKGNDQIRFESY-LTTLDDNI--KTIAPV 161

Query: 193 --GDMKKESVRDLAREMGLDIADKSD 216
               M +E   + A + G+ +  + D
Sbjct: 162 REWGMGREQELEYAEKHGIPVKQQKD 187


>gi|256027925|ref|ZP_05441759.1| NAD synthetase [Fusobacterium sp. D11]
 gi|289765872|ref|ZP_06525250.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. D11]
 gi|289717427|gb|EFD81439.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. D11]
          Length = 258

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 52/206 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++VA LL+   G + V+ + +                    +  A+ V
Sbjct: 30  KAVLGLSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQL 136
            + + ++    +         I     +Y   E     +     +   + S L   + + 
Sbjct: 79  IEDLKINSKTIE---------ITDMIDAYFKNEKEASSLRMGNKMARERMSILFDYSSKE 129

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A V+ T                           + + Y  ++T          P+GD+ 
Sbjct: 130 NALVVGT-------------------------SNKTEIYLGYSTQFGDSACALNPIGDLY 164

Query: 197 KESVRDLAREMGLDIA--DKSDSQDI 220
           K ++ DL+R + +     +K  S D+
Sbjct: 165 KTNIWDLSRYLKIPNELIEKKPSADL 190


>gi|157165515|ref|YP_001466416.1| ExsB protein [Campylobacter concisus 13826]
 gi|189038900|sp|A7ZCA8|QUEC_CAMC1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157101540|gb|EAT99024.2| ExsB protein [Campylobacter concisus 13826]
          Length = 221

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
           + V  MSGG+DS++ A + KR GYDV+ +  
Sbjct: 2  KKAVCIMSGGMDSTLCAVMAKRAGYDVVALHF 33


>gi|148244318|ref|YP_001219012.1| argininosuccinate synthase [Candidatus Vesicomyosocius okutanii HA]
 gi|166989398|sp|A5CXM9|ASSY_VESOH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|146326145|dbj|BAF61288.1| argininosuccinate synthase [Candidatus Vesicomyosocius okutanii HA]
          Length = 403

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S++   L+   Y    VT                  G++V  AR   +
Sbjct: 8   KVVLAYSGGLDTSIIVKWLQDT-YQCEVVTF-----------TADIGQGEEVEPARVKAE 55

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
              V   Y+ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 56  AAGVKEIYIEDLREEFARNFVFPMFRANAIYEGEYLLGTSIARPLISKR------LVEIA 109

Query: 134 RQLGADVLATG 144
           +Q+GAD ++ G
Sbjct: 110 KQVGADAISHG 120


>gi|289191947|ref|YP_003457888.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938397|gb|ADC69152.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
          Length = 277

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+A SGG DS +   LL+ +         +L  +           A + + +A  V    
Sbjct: 61  VLAFSGGKDSVLALKLLREE--------FKL--NPLCVMVDNKYMAKEAIENALNVTKHY 110

Query: 84  NVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           NV   +   DY + F +A+          GE+  PC  C+R +   ++  + + LG   +
Sbjct: 111 NVDLMILNRDYTDLFEDAI--------KRGES--PCRRCSRLI-LREVWRIAKMLGLKYV 159

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171
            TGH +        D K    M R +   +
Sbjct: 160 ITGHELPFGHSAVRDMKEGIKMIRLLAPYK 189


>gi|189201423|ref|XP_001937048.1| argininosuccinate synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|330922655|ref|XP_003299921.1| hypothetical protein PTT_11028 [Pyrenophora teres f. teres 0-1]
 gi|187984147|gb|EDU49635.1| argininosuccinate synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|311326191|gb|EFQ91983.1| hypothetical protein PTT_11028 [Pyrenophora teres f. teres 0-1]
          Length = 415

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L  +GY+V+   L      +                  +
Sbjct: 2   SKGRVCLAYSGGLDTSTILKWLIEEGYEVV-CFLANVGQEEPWDE------------VEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I  +   + D ++ F   +              Y  G +    V     ++     
Sbjct: 49  KALKIGALKMVILDLQKEFVEELCFRAVQCNASYEGRYLLGTSLARPVIARAQIR----- 103

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 104 -VAQQEGCGFVSHG 116


>gi|188581502|ref|YP_001924947.1| argininosuccinate synthase [Methylobacterium populi BJ001]
 gi|179345000|gb|ACB80412.1| Argininosuccinate synthase [Methylobacterium populi BJ001]
          Length = 413

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 30/143 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D   N    +VV+A SGG+D+S++   L+   G +V+  T                  G+
Sbjct: 3   DASPNKSVKKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGE 49

Query: 72  DVYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCN 121
           ++  ARR  + + +     ++ D  E F    + P   +       Y  G +    +   
Sbjct: 50  ELEPARRKAELLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGVYLLGTSIARPLIAK 109

Query: 122 RTVKFSDLLSVTRQLGADVLATG 144
           + +       +  ++GAD +  G
Sbjct: 110 KQI------EIAERVGADAVCHG 126


>gi|169619928|ref|XP_001803376.1| hypothetical protein SNOG_13164 [Phaeosphaeria nodorum SN15]
 gi|111058371|gb|EAT79491.1| hypothetical protein SNOG_13164 [Phaeosphaeria nodorum SN15]
          Length = 415

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L  +GY+V+   L      +                  +
Sbjct: 2   SKGRVCLAYSGGLDTSTILKWLIEEGYEVV-CFLANVGQEEPWDE------------VEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I  +   + D ++ F   +              Y  G +    V     ++     
Sbjct: 49  KALKIGALKMVILDLQKEFVEELCFRAVQCNASYEGRYLLGTSLARPVIARAQIR----- 103

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 104 -VAQQEGCGFVSHG 116


>gi|78128014|gb|ABB22296.1| GMP synthase [Pseudomonas aeruginosa]
          Length = 124

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 21/79 (26%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++ +SGGVDSSVVAALL +  G  +  V      L+L+   +                  
Sbjct: 1  LLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMF------------- 47

Query: 78 RVCDTINVSHYVFDYEERF 96
             + + V     + E++F
Sbjct: 48 --AENMGVKVIRANAEDKF 64


>gi|319785048|ref|YP_004144524.1| NAD+ synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170936|gb|ADV14474.1| NAD+ synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 319

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 73/218 (33%), Gaps = 46/218 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VVV +SGG+DSSVVA +  R  G D V+G+ +     R +S        G  +   R V 
Sbjct: 30  VVVGLSGGIDSSVVATVCARAFGRDKVLGLFM---PERDSS--------GDSLRLGRSVA 78

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-------------- 126
             + +   + D +       I  +A    A  T +P        K               
Sbjct: 79  GQLGIDTILEDIQPALEG--IGAYARQTEAIRTAVPGYGEGWKCKLVMASVLESSGLNIT 136

Query: 127 -------SDLLSVTRQLGADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLER---D 172
                     +   R   A  L    AT +  R R         R          R   D
Sbjct: 137 RLTVEDPDGKIDTVRLSPAAYLQIVAATNYKQRVRKMTEYYHADRLNYAVAGTPNRLEYD 196

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           Q +F+       + D+  P+  + K  V  LA  +G+D
Sbjct: 197 QGFFVKQ--GDGVADVM-PIVHLYKTQVYQLAEYLGID 231


>gi|303257911|ref|ZP_07343920.1| ExsB protein [Burkholderiales bacterium 1_1_47]
 gi|302859254|gb|EFL82336.1| ExsB protein [Burkholderiales bacterium 1_1_47]
          Length = 231

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          M+ +V  SGGVDS+   A+     G + + VTL        S   G     +++  A++V
Sbjct: 1  MKAIVLSSGGVDSTTCLAMAVHELGKENV-VTL--------SFEYGQ-RHSKELEGAQKV 50

Query: 80 CDTINVSHYVFDYEERFR 97
           D   V H VF+  + F 
Sbjct: 51 ADFYGVKHVVFNLTQIFS 68


>gi|189467232|ref|ZP_03016017.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM
           17393]
 gi|189435496|gb|EDV04481.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM
           17393]
          Length = 443

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ +++V +SGG DS V    LL   GY         +     S R        D    R
Sbjct: 18  REDKILVTLSGGADS-VALLRLLLDMGYTCEAAHCNFHLRGDESVR--------DEMFVR 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C  + V  +V              F +   A +  +      R ++++    +  Q G
Sbjct: 69  ELCLQLVVPLHV------------QHFQTMEEAEKRHISIEMAARELRYAWFEQLRLQQG 116

Query: 138 ADVLATGHY 146
           ADV+A  H+
Sbjct: 117 ADVIAVAHH 125


>gi|324512165|gb|ADY45046.1| Cytoplasmic tRNA 2-thiolation protein 1 [Ascaris suum]
          Length = 234

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 20/191 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +  +V +  SGG DS+V+A LL      YD  GV L L +  +  +          +  
Sbjct: 46  KRGEKVAIGASGGKDSTVLAYLLNTLNKRYD-YGVELLLLSIDEGIQGY----RDDSLKA 100

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R      +      Y++ +             A   T   C  C    +   L     
Sbjct: 101 VERNRLQYGLPLTTLSYKDLYGWT-----MDEIVAKIGTKNNCTFCGVFRR-QALDRGAL 154

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            LGA+ L TGH                 + R       +   +   +   L   + PL  
Sbjct: 155 MLGANKLVTGHNADDMAE-----TVLMNLLRGDIARLQRCATIVTGSDDCLPRAK-PLKY 208

Query: 195 MKKESVRDLAR 205
             ++ +   A 
Sbjct: 209 TLEKDIVMYAH 219


>gi|256422772|ref|YP_003123425.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037680|gb|ACU61224.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588]
          Length = 445

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 37/227 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++A+SGGVDS V+A L K  GY   +     QL                     A  +  
Sbjct: 24  LLAVSGGVDSVVMAHLFKAAGYRFAIAHCNFQLRGDESVRDESF----------AADLAR 73

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V+ +   +              +Y   +     V   R +++  L     Q G   +
Sbjct: 74  RLQVTFHQVRF-----------DTEAYTESKRVSIQVAA-RELRYEWLEQTREQGGYSYI 121

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            T H+++  +           + +   +       L     +Q   L  PL   +KE++ 
Sbjct: 122 VTAHHMQDSVE-----TLLMNLSKGTGIA-----GLHGILPKQ-GKLLRPLLFAEKENLI 170

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248
             A E  +   +  DS ++       +F          A  G +V++
Sbjct: 171 AYAAEHHIPYVE--DSSNLTVKYTRNFFRHKVIPVMQEANPGTVVNI 215


>gi|126734425|ref|ZP_01750172.1| argininosuccinate synthase [Roseobacter sp. CCS2]
 gi|126717291|gb|EBA14155.1| argininosuccinate synthase [Roseobacter sp. CCS2]
          Length = 404

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 69/208 (33%), Gaps = 49/208 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
             + +     Y+ D  E F    + P   + A  E          R +    L+ +    
Sbjct: 51  KAEMMGATGIYIEDLREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAEAE 110

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLRFP-- 191
           GAD ++ G                           DQ  F    +A   +    +  P  
Sbjct: 111 GADAISHG---------------------ATGKGNDQIRFELAAYALNPEI--KVVAPWR 147

Query: 192 ---LGDMKKESVRDLAREMGLDIADKSD 216
              LG   K  + + A +  + IA    
Sbjct: 148 EWDLGSRTK--LIEFAEKHQIPIAKDKR 173


>gi|71277989|ref|YP_267221.1| argininosuccinate synthase [Colwellia psychrerythraea 34H]
 gi|119361266|sp|Q489P3|ASSY_COLP3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|71143729|gb|AAZ24202.1| argininosuccinate synthase [Colwellia psychrerythraea 34H]
          Length = 418

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S +   LK   DG +VI               +      + +     
Sbjct: 9   KKVVLAYSGGLDTSAIIPWLKENYDGCEVIAFC----ADVGQGDEELEGVKEKAIASGAS 64

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            C       YV D +E +    I P           Y  G +    +     +       
Sbjct: 65  EC-------YVVDLKEEYVKEYIYPILKTGSVYEGQYLLGTSMARPIIAKAHI------E 111

Query: 132 VTRQLGADVLATG 144
           V  ++GAD +  G
Sbjct: 112 VALKVGADAVCHG 124


>gi|87307052|ref|ZP_01089198.1| Predicted PP-loop superfamily ATPase [Blastopirellula marina DSM
          3645]
 gi|87290425|gb|EAQ82313.1| Predicted PP-loop superfamily ATPase [Blastopirellula marina DSM
          3645]
          Length = 219

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          +VV  +SGG+DS+ +   L   G+DV  +++  Y  R            +++  AR++CD
Sbjct: 3  KVVAVVSGGMDSATLLYHLIDAGHDVRAISI-NYGQR----------HVKELDYARQLCD 51

Query: 82 TINVSHYVFDYE 93
           + V   V D  
Sbjct: 52 KVGVPQIVADLS 63


>gi|67925789|ref|ZP_00519089.1| Argininosuccinate synthase [Crocosphaera watsonii WH 8501]
 gi|67852369|gb|EAM47828.1| Argininosuccinate synthase [Crocosphaera watsonii WH 8501]
          Length = 400

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 13/140 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   + 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVDEVITLAADLGQGDELGPIQA 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D    F          + A  E   P      R +    L+    + 
Sbjct: 52  KALKSGAVESLVEDATTEFVTDYAFKAIKANALYENRYPLSTALARPLIAKLLVDAAEKY 111

Query: 137 GADVLATGHYIRSRLYVGDD 156
           GAD +A G   +    V  D
Sbjct: 112 GADAVAHGCTAKGNDQVRFD 131


>gi|156536862|ref|XP_001604520.1| PREDICTED: similar to asparagine synthetase [Nasonia vitripennis]
          Length = 560

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 44/168 (26%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARR 78
           D R+   +SGG+DSS+VAALL +          + +N     +       G  D+  AR+
Sbjct: 247 DRRIGCMLSGGLDSSLVAALLVK--------YAKQHNLPYKIQSFSIGMEGSPDILAARQ 298

Query: 79  VCDTINVSHYVFDYEERFRNAVIV--------------------PFASSYAAGETPLPCV 118
           V D I   H+     ++    V+                        S Y    T    +
Sbjct: 299 VADHIGTEHHEIIITQKDITDVLEKVIYYTETFDITTIRASIGMYLISRYIKNNTETTVI 358

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGH-YIRSRLYVGDDGKRRRIMCR 165
                             GAD LA G+ Y R      D  K    + +
Sbjct: 359 FSGE--------------GADELAQGYIYFRDAPSAFDGHKESLRLLK 392


>gi|134277601|ref|ZP_01764316.1| argininosuccinate synthase [Burkholderia pseudomallei 305]
 gi|134251251|gb|EBA51330.1| argininosuccinate synthase [Burkholderia pseudomallei 305]
          Length = 404

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YAREHDVDCLSHG 117


>gi|33866961|ref|NP_898520.1| ATPase [Synechococcus sp. WH 8102]
 gi|81573666|sp|Q7U3K1|QUEC_SYNPX RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|33639562|emb|CAE08946.1| possible ATPase [Synechococcus sp. WH 8102]
          Length = 226

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V  +SGG+DS+  AA+   +G  VIG++   ++  +   R+        +  A  V   +
Sbjct: 7  VALLSGGLDSATAAAMALEEGDRVIGLS---FDYGQRHHRE--------LEAAAAVASHL 55

Query: 84 NV-SHYVF 90
           +  H+  
Sbjct: 56 GLAEHHCL 63


>gi|322383315|ref|ZP_08057115.1| NAD synthetase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152435|gb|EFX45234.1| NAD synthetase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 268

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 46/198 (23%)

Query: 24  VVAMSGGVDSSVVAALL--------KRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++A+SGGVDS+V   L         K  G  Y  +GV                    +D+
Sbjct: 43  LIAISGGVDSAVATGLCKRATDELSKEKGKEYKTVGVF-------------QPYGVQEDI 89

Query: 74  YDARRVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            D+        +SH +  + EE      +   A     G  P      ++  K  ++ + 
Sbjct: 90  EDSYATAKAFGLSHTIETNIEEA-----VNEIALEVEHGLKPYVNRHMSKEGK-GNIKAR 143

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           TR +    +A      + L VG D     +           + F        +     PL
Sbjct: 144 TRMVVQYAIAFE---LNLLVVGTDHASEAV-----------TGFYTKWGDGAVD--ITPL 187

Query: 193 GDMKKESVRDLAREMGLD 210
             + K  VR LARE+G+ 
Sbjct: 188 SSLNKRQVRMLARELGVP 205


>gi|315637436|ref|ZP_07892648.1| thiamine biosynthesis protein ThiI [Arcobacter butzleri JV22]
 gi|315478273|gb|EFU68994.1| thiamine biosynthesis protein ThiI [Arcobacter butzleri JV22]
          Length = 488

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 47/193 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  MSGG DS+V + L  + G   I      +N    +   G           ++V   
Sbjct: 190 VISLMSGGFDSTVASYLTMKRG---IKTHFIFFNLGGLAHEIG----------VKQVAYY 236

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---SVTRQL 136
           +       +   +       V+       +    P   V   R +    LL    +   L
Sbjct: 237 LWNKFGSSHRVSFISVPFEDVVSQIFKDVS---QPYMGVMLKRLM----LLASEKIADSL 289

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM 195
           G D L TG  +                         Q+    A   Q    L   PL  M
Sbjct: 290 GIDALVTGESVAQVSS--------------------QTLRNLALIDQCTNKLVLRPLSMM 329

Query: 196 KKESVRDLAREMG 208
            K  + ++A+++G
Sbjct: 330 SKPDIIEIAQKIG 342


>gi|288574376|ref|ZP_06392733.1| ExsB family protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570117|gb|EFC91674.1| ExsB family protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 271

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 49/207 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+V+ SGGVDSS + ALL   G    G          +          ++   A  +C  
Sbjct: 27  VLVSFSGGVDSSAILALL--AGIMPDGTF-------HSVLFDSFLHPEKERERAVSLCRD 77

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V   V    E   + V+         G     C  C + ++  ++L +  ++G D + 
Sbjct: 78  LGVDLRVLPGPELSDDRVMGN-----LEGR----CAFC-KELRICEILRLKEEMGIDTIV 127

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--LRFPLGD--MKKE 198
                        DG          D  +D +          L    +  PL +  + K 
Sbjct: 128 -------------DGTNH-------DDLQDPT----RLGNSVLNRYPVFSPLAEAGLSKR 163

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQ 225
            VRDLA+E+ +   +  ++   C   +
Sbjct: 164 RVRDLAKELDIPWWN--ETATACMATR 188


>gi|224106175|ref|XP_002314072.1| predicted protein [Populus trichocarpa]
 gi|222850480|gb|EEE88027.1| predicted protein [Populus trichocarpa]
          Length = 111

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRN------DDGVYVD 351
            +    +  + WL     ++   +  KC   + R         V+        ++   V 
Sbjct: 1   MLKTFRVGSLRWLSGSPPDE--TNQLKCKEERARHGPAFYDCRVKVELGVHGHEEVAVVH 58

Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383
             + + G+A+GQ   FY         L  G+I
Sbjct: 59  LCEDDQGLAAGQFTAFYEG----RTCLASGVI 86


>gi|157737660|ref|YP_001490343.1| thiamine biosynthesis protein ThiI [Arcobacter butzleri RM4018]
 gi|157699514|gb|ABV67674.1| thiamine biosynthesis protein ThiI [Arcobacter butzleri RM4018]
          Length = 488

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 47/193 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  MSGG DS+V + L  + G   I      +N    +   G           ++V   
Sbjct: 190 VISLMSGGFDSTVASYLTMKRG---IKTHFIFFNLGGLAHEIG----------VKQVAYY 236

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---SVTRQL 136
           +       +   +       V+       +    P   V   R +    LL    +   L
Sbjct: 237 LWNKFGSSHRVSFISVPFEDVVSQIFKDVS---QPYMGVMLKRLM----LLASEKIADSL 289

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM 195
           G D L TG  +                         Q+    A   Q    L   PL  M
Sbjct: 290 GIDALVTGESVAQVSS--------------------QTLRNLALIDQCTNKLVLRPLSMM 329

Query: 196 KKESVRDLAREMG 208
            K  + ++A+++G
Sbjct: 330 SKPDIIEIAQKIG 342


>gi|15897467|ref|NP_342072.1| hypothetical protein SSO0544 [Sulfolobus solfataricus P2]
 gi|284175915|ref|ZP_06389884.1| hypothetical protein Ssol98_14833 [Sulfolobus solfataricus 98/2]
 gi|6015928|emb|CAB57755.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813706|gb|AAK40862.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602212|gb|ACX91815.1| Queuosine synthesis-like protein [Sulfolobus solfataricus 98/2]
          Length = 245

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 41/186 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ ++GG+DS+V+A  LK+D Y + G  +            G     +++   + +   +
Sbjct: 6   IIQLTGGIDSTVLAYYLKKDKYVLHGTFIH----------YGYPPQIKELELVKELSKKL 55

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   + D+              SY       P       +K+  ++ +     A   A 
Sbjct: 56  DIPLKIIDFS-------------SYIKSFDLPPIDSIQYIIKYQFVVEIL----ASFSAY 98

Query: 144 GHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            +     + ++ D+   R  +       +D    +          +  P   M K  V  
Sbjct: 99  PNLNTMFVGWLKDEWNNRISLL------KDIESLMGF-------KVIAPFHTMVKSEVIK 145

Query: 203 LAREMG 208
           L  E+G
Sbjct: 146 LGNELG 151


>gi|258513892|ref|YP_003190114.1| argininosuccinate synthase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777597|gb|ACV61491.1| argininosuccinate synthase [Desulfotomaculum acetoxidans DSM 771]
          Length = 401

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   LK + GY+VI           A   +G           +   
Sbjct: 3   KVVLAYSGGLDTSIIIPWLKENYGYEVIA--------MAADLGQGEELEPLHEKAVKSGA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
             +    Y+ D  + F    I P           Y  G +        R +    L+ + 
Sbjct: 55  SKL----YIEDVRKEFVEEYIFPTLRAGAIYEGKYLLGTSMA------RPLIAKKLVEIA 104

Query: 134 RQLGADVLATG 144
            + GA+ +A G
Sbjct: 105 VKEGAEAVAHG 115


>gi|320352986|ref|YP_004194325.1| NH(3)-dependent NAD(+) synthetase [Desulfobulbus propionicus DSM
           2032]
 gi|320121488|gb|ADW17034.1| NH(3)-dependent NAD(+) synthetase [Desulfobulbus propionicus DSM
           2032]
          Length = 541

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R V+ +SGG+DS+V A +  R  G + V+ V +                +   + DAR++
Sbjct: 286 RAVLGLSGGIDSAVTAVIACRALGPENVLCVAM-----------PSPYTSQASIDDARQL 334

Query: 80  CDTINVSHYVF 90
              +     + 
Sbjct: 335 AANLGCDFEII 345


>gi|262306005|gb|ACY45595.1| gln amidotransferase [Ammothea hilgendorfi]
          Length = 197

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +      V+ V +     RK   +                
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALQPNQVLAVHIDNGFMRKDESKHVESSL---------- 94

Query: 80  CDTINVSHYVFDYEERF 96
              +N+   V +    F
Sbjct: 95  -RKLNLQLSVVNAAHLF 110


>gi|161528474|ref|YP_001582300.1| NAD+ synthetase [Nitrosopumilus maritimus SCM1]
 gi|160339775|gb|ABX12862.1| NAD+ synthetase [Nitrosopumilus maritimus SCM1]
          Length = 237

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 48/200 (24%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQD 72
           ++KN  +  ++  +SGG+DS+V+A + KR   +    + +             +     +
Sbjct: 1   MEKNHAEGLIL-GLSGGIDSAVLAYICKRKFANKTTALIM----------PDTAITPKTE 49

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLL 130
             DA ++     + + + D         I P  + Y+    P      N    V+ + L 
Sbjct: 50  TDDALKMISLTGIQYKLLD---------INPIVNEYSMYLEPNERAKGNLRARVRTNILY 100

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                   + L  G   +S   +G          +  D   D                  
Sbjct: 101 YYANAK--NYLVLGSSDKSEYLIG-------YFTKFGDGASD----------------IT 135

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+  + K  VR++A+ +G+ 
Sbjct: 136 PIVSLYKLQVREIAKYLGVP 155


>gi|84499552|ref|ZP_00997840.1| NAD(+) synthase [Oceanicola batsensis HTCC2597]
 gi|84392696|gb|EAQ04907.1| NAD(+) synthase [Oceanicola batsensis HTCC2597]
          Length = 552

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGG+DS++VA +     G + +   +                +   + DAR V 
Sbjct: 286 KVLLGLSGGIDSAIVATIAADALGPENVRCVM----------LPSEYTSDHSLEDARAVA 335

Query: 81  DTINVSHY 88
             +   ++
Sbjct: 336 RALGCRYH 343


>gi|303246085|ref|ZP_07332366.1| tRNA methyl transferase-like protein [Desulfovibrio
          fructosovorans JJ]
 gi|302492481|gb|EFL52352.1| tRNA methyl transferase-like protein [Desulfovibrio
          fructosovorans JJ]
          Length = 182

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V V +SGG+DSS  A   ++  + V  +              G   + ++   ++ + 
Sbjct: 2  KKVYVLLSGGIDSSACAHFYQQADFLVEAIFF----------SYGQAASAKEEIASKNIA 51

Query: 81 DTINVSHYVFDYE 93
          D + +    ++ E
Sbjct: 52 DHLGIHLTKYNLE 64


>gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 770

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 15/86 (17%)

Query: 15  DKNPKDMRVVVAMSGGVDSSV---VAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCC 68
             NPK  ++++++SGGVDS V     A L+R  GY+  +  V +   N   +        
Sbjct: 409 SSNPKTRKIIISLSGGVDSMVIASALAHLRRSLGYNLQLTAVHIDYANRPDSKAEASY-- 466

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEE 94
                    R C  + + ++V   EE
Sbjct: 467 -------VERYCQQLEIEYHVRRIEE 485


>gi|196230695|ref|ZP_03129556.1| NAD+ synthetase [Chthoniobacter flavus Ellin428]
 gi|196225036|gb|EDY19545.1| NAD+ synthetase [Chthoniobacter flavus Ellin428]
          Length = 543

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 22/118 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+V A +     G   V+GVT+                +   V D+  +  
Sbjct: 290 VLGLSGGIDSAVTACIAAHALGTEHVLGVTM-----------PTQYSSQGSVDDSLAIAK 338

Query: 82  TINVSHYVFDYE---ERFRNAVIVPF--ASSYAAGETPLPCVDCNRTV----KFSDLL 130
            + +       +   E FR      F         E   P +     +    KF  LL
Sbjct: 339 NLGIRCLTIPIQRSFETFREQFREVFTGLPEDTTEENMQPRLRGMTLMALSNKFGSLL 396


>gi|147678886|ref|YP_001213101.1| GMP synthase [Pelotomaculum thermopropionicum SI]
 gi|146274983|dbj|BAF60732.1| hypothetical GMP synthase [Pelotomaculum thermopropionicum SI]
          Length = 513

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 61/195 (31%), Gaps = 38/195 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R + A+SGGVDSSV A L+ R  G  +  V +     RK    +                
Sbjct: 220 RALCALSGGVDSSVAAVLVHRAVGDRLTCVFVNHGLLRKGEAEQVQKTFK---------- 269

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQL 136
           +   ++    D   RF +           AG T     +  R +               L
Sbjct: 270 EKFKMNLIYVDARRRFLSR---------LAGVT---DPEMKRKIIGEEFIRVFEDQAAAL 317

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G  D L  G        V + G     + +           +          L  PL  +
Sbjct: 318 GQVDFLVQG---TLYPDVVESGTATAAVIKSHHN-------VGCLPGDMRFGLVEPLRWL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR+L  EMGL 
Sbjct: 368 FKDEVRELGEEMGLP 382


>gi|159046012|ref|YP_001534806.1| argininosuccinate synthase [Dinoroseobacter shibae DFL 12]
 gi|189046388|sp|A8LPE0|ASSY_DINSH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157913772|gb|ABV95205.1| argininosuccinate synthase [Dinoroseobacter shibae DFL 12]
          Length = 406

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +VV+A SGG+D+S++   L+ + YD   VT                  G+++  AR  
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTE-YDCEVVTF-----------TADLGQGEELEPARAK 51

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
            + +  S  Y+ D  E F    + P   +       Y  G +    +   R      L+ 
Sbjct: 52  AEMMGASAIYIEDLREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LVE 105

Query: 132 VTRQLGADVLATG 144
           +    GAD +A G
Sbjct: 106 IAEAEGADAVAHG 118


>gi|152978319|ref|YP_001343948.1| NAD+ synthetase [Actinobacillus succinogenes 130Z]
 gi|150840042|gb|ABR74013.1| NAD+ synthetase [Actinobacillus succinogenes 130Z]
          Length = 249

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + +SGG+DS+V A L  R G  V  + L                + +DV DA+   ++  
Sbjct: 29  LGVSGGIDSAVCAHLAARTGAPVQALIL-----------PAEVTSPEDVADAQITLESAG 77

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF--SDLLSVTRQLGADVLA 142
           +   +           I P+        TP      +  +     +L++  R +     A
Sbjct: 78  IDGRIIS---------IAPWYDLIMLQLTPA-LNAESERINVLKGNLMARLRMIALFTTA 127

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
             H                   +  D   D                  PL  ++KE V +
Sbjct: 128 QSHRSIVLGTDNAAEMLTGYFTKFGDGAAD----------------VLPLARLRKEQVFE 171

Query: 203 LAREMGLD--IADKSDSQDI 220
           L R +G+   + +K  S  +
Sbjct: 172 LGRYLGVPKSVLEKKPSAGL 191


>gi|238924073|ref|YP_002937589.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Eubacterium rectale ATCC 33656]
 gi|238875748|gb|ACR75455.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale ATCC 33656]
          Length = 247

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 70/230 (30%), Gaps = 42/230 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           D +   ++ ++ + +SGG DS  +   L   R  Y V             +         
Sbjct: 16  DYNMITENDKIAIGVSGGKDSLTLLYALSGIRSFYPV--------PFELVAIAVDLGYED 67

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D+   + +CD ++V  YV       +  +         +     PC  C +  K   L 
Sbjct: 68  FDLSPVKALCDELSVEFYVV------KTDIGRISLE--KSKNQASPCSWCAKLRK-GALN 118

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ-----QQL 185
                +G + +A  H++       DD      +     L   Q Y     TQ       +
Sbjct: 119 DFALSVGCNKIAYAHHM-------DDIIETMFL---SLLYEGQFYSFAPVTQLDGSGLAI 168

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235
                 +G+     V+    +  L +         C        + VK++
Sbjct: 169 IRPLMYVGE---SDVKGFKNKYNLPVCKNP-----CPYDGHTRREYVKQL 210


>gi|220927124|ref|YP_002502426.1| argininosuccinate synthase [Methylobacterium nodulans ORS 2060]
 gi|219951731|gb|ACL62123.1| argininosuccinate synthase [Methylobacterium nodulans ORS 2060]
          Length = 413

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  ARR 
Sbjct: 10  QKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELEPARRK 56

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
            + + +     ++ D  E F    + P   +       Y  G +    +   + +     
Sbjct: 57  AELLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGVYLLGTSIARPLIAKKQI----- 111

Query: 130 LSVTRQLGADVLATG 144
             +  ++GAD +A G
Sbjct: 112 -EIAEKVGADAVAHG 125


>gi|259506693|ref|ZP_05749595.1| GMP synthase [Corynebacterium efficiens YS-314]
 gi|259165711|gb|EEW50265.1| GMP synthase [Corynebacterium efficiens YS-314]
          Length = 497

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 193 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 243

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  + F + +                 +          L         
Sbjct: 244 VAAT-GAKLVTVDERKAFLDKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLEDSPEGSTV 302

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +         +L  PL  + K+
Sbjct: 303 DFLVQGTLYPDVVESG--GGAGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFKD 353

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 354 EVRAVGRELGLP 365


>gi|320155160|ref|YP_004187539.1| argininosuccinate synthase [Vibrio vulnificus MO6-24/O]
 gi|319930472|gb|ADV85336.1| argininosuccinate synthase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 26/153 (16%)

Query: 1   MVVSEATRLNSLDLDKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           M ++   R +   ++ +  +  +VVVA SGG+D+SV+   LK             Y+   
Sbjct: 1   MALTAECRPDKWRMEMSKLNVNKVVVAYSGGLDTSVIIPWLKE-----------NYDCEV 49

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAG 111
            +         +++               YV D +E      I P           Y  G
Sbjct: 50  VAFVADVGQGEEELVGIEEKAKASGASECYVVDLKEELVADYIYPTLKTGAYYEGKYLLG 109

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
            +    V     V       + R++GAD L  G
Sbjct: 110 TSMARPVIAKAQV------EIARKVGADALCHG 136


>gi|302761264|ref|XP_002964054.1| hypothetical protein SELMODRAFT_82070 [Selaginella moellendorffii]
 gi|300167783|gb|EFJ34387.1| hypothetical protein SELMODRAFT_82070 [Selaginella moellendorffii]
          Length = 429

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +VV+A SGG+D+SV+   L+ + G DV+  T        A   +G          A+   
Sbjct: 30  KVVLAYSGGLDTSVIVPWLRENYGCDVVCFT--------ADVGQGLGELEGLEAKAKASG 81

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLS 131
              + +     D +E F    I P           Y  G +   P V     V    ++ 
Sbjct: 82  ASQLIIK----DLKEEFVKDFIFPCLRAGAVYERKYLLGTSMARPLVL----VFVQAMVD 133

Query: 132 VTRQLGADVLATG 144
             +++GAD ++ G
Sbjct: 134 AAKEVGADAVSHG 146


>gi|292669657|ref|ZP_06603083.1| NAD(+) synthase [Selenomonas noxia ATCC 43541]
 gi|292648454|gb|EFF66426.1| NAD(+) synthase [Selenomonas noxia ATCC 43541]
          Length = 555

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RVV+ +SGG+DS+V AAL      D IG   V L    S+  S              A +
Sbjct: 245 RVVIGISGGIDSAVAAALYV----DAIGADKVLLVNMPSKFNSATTKDL--------AAQ 292

Query: 79  VCDTINVSHYVFDYEE 94
           + +++   H +   EE
Sbjct: 293 LAESLGCRHMIVPIEE 308


>gi|227498672|ref|ZP_03928816.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904128|gb|EEH90046.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 261

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 78/214 (36%), Gaps = 45/214 (21%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSS-VVAALLKRDGY-----DVIGVTLQLYNSRKASKRKG 65
           ++ +   +  ++++ +SGG DS  + AAL +   +     D++  T+    +    K++ 
Sbjct: 20  IEFNMIEEGDKILIGLSGGKDSMFLTAALAEIQKHSPRHFDLLCYTMDGMFAEDFPKKE- 78

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                  + D    C T  ++H        +   V V     +  G T  PC  C    +
Sbjct: 79  -------LEDF---CRTYGLTH--------YSEQVNVEALWGHR-GNT--PCFSC-AYFR 116

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            + +    R+LG   +A  H+        +D     +M       +++++         L
Sbjct: 117 RAAMNRKARELGCSKIALAHH--------NDDAVETLMLNLFQSGQNKTF----LPVTHL 164

Query: 186 CD----LRFPLGDMKKESVRDLAREMGLDIADKS 215
                 +  PL   ++  +  + +++GL      
Sbjct: 165 SRSGMTVIRPLLFYREAEIIAIGKKIGLHPLANP 198


>gi|119477972|ref|ZP_01618072.1| exsB protein [marine gamma proteobacterium HTCC2143]
 gi|119448885|gb|EAW30127.1| exsB protein [marine gamma proteobacterium HTCC2143]
          Length = 218

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 22/145 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VV  SGG+DS  +     ++G+DV+ ++   Y  R            +++  A R C
Sbjct: 1   MKIVVIYSGGIDSFTILNKALQEGHDVLAISF-NYGQR----------HNKELDYAARAC 49

Query: 81  DTINVSHYVFDYEERF----------RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             + + H + D               ++ VI+P    Y A       V     +  S  +
Sbjct: 50  KELGIVHKLVDISAMQTLMSNSSLMAKSDVIIP-EGHYEAENMKSTVVPNRNMILISLAI 108

Query: 131 SVTRQLGADVLATGHYIRSRLYVGD 155
                 GA  +  G +        D
Sbjct: 109 GYAVNEGASEVWYGAHAGDHTIYPD 133


>gi|37681184|ref|NP_935793.1| argininosuccinate synthase [Vibrio vulnificus YJ016]
 gi|37199935|dbj|BAC95764.1| argininosuccinate synthase [Vibrio vulnificus YJ016]
          Length = 418

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 26/153 (16%)

Query: 1   MVVSEATRLNSLDLDKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59
           M ++   R +   ++ +  +  +VVVA SGG+D+SV+   LK             Y+   
Sbjct: 1   MALTAECRPDKWRMEMSKLNVNKVVVAYSGGLDTSVIIPWLKE-----------NYDCEV 49

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAG 111
            +         +++               YV D +E      I P           Y  G
Sbjct: 50  VAFVADVGQGEEELVGIEEKAKASGASECYVVDLKEELVADYIYPTLKTGAYYEGKYLLG 109

Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
            +    V     V       + R++GAD L  G
Sbjct: 110 TSMARPVIAKAQV------EIARKVGADALCHG 136


>gi|239907020|ref|YP_002953761.1| hypothetical protein DMR_23840 [Desulfovibrio magneticus RS-1]
 gi|239796886|dbj|BAH75875.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 266

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 33/199 (16%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV +A+SGGVDS V+ A +  R       V L L +       +      +       +C
Sbjct: 39  RVGLAVSGGVDSLVMLAVMAIRRRIVPFPVELILLHLNPGFDPENHSPLAE-------LC 91

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSVTRQLGAD 139
             + V  ++          V      +++       PC  C   ++   L  +  +    
Sbjct: 92  ADLGVPAHI---------EVTDYGPRAFSEENKKNSPCFYC-AWLRRKRLFDLCARYNLS 141

Query: 140 VLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            LA GH      +  ++      R       +     S+F    T      +  PL  + 
Sbjct: 142 HLAFGHNADDLAATFFLNLFQNGRVDGLSGRE-----SFFSGRLT------VIRPLLLVD 190

Query: 197 KESVRDLAREMGLDIADKS 215
           K ++   A+   L +    
Sbjct: 191 KPTIIRAAKAWELPVFSNP 209


>gi|228957712|ref|ZP_04119456.1| hypothetical protein bthur0005_12280 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801955|gb|EEM48828.1| hypothetical protein bthur0005_12280 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 223

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 34/203 (16%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1   MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFAS------SYAAGETPLPCVDCNR--TVK 125
             A  +   + + H V D      N +     +      ++  GE P   VD      + 
Sbjct: 51  --AAEIAKELGIKHTVLDMSLL--NQLAPNALTRTDMEITHEEGELPSTFVDGRNLLFLS 106

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+ +L   +Q+GA  + TG           D       CR + ++        +     +
Sbjct: 107 FAAVL--AKQVGARHIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLSMDYPFV 156

Query: 186 CDLRFPLGDMKKESVRDLAREMG 208
                PL  + K     LA E+G
Sbjct: 157 IHT--PLMWIDKAETWKLADELG 177


>gi|195568773|ref|XP_002102388.1| GD19536 [Drosophila simulans]
 gi|194198315|gb|EDX11891.1| GD19536 [Drosophila simulans]
          Length = 419

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 30/136 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK+  V++A SGG+D+S +   L    Y+VI V                    +D   A 
Sbjct: 2   PKET-VILAYSGGLDTSCILKWLLDKQYEVICV-------------LADVGQKEDFTAAE 47

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSD 128
           +    I      V D ++ F    I P           Y  G +   PC+          
Sbjct: 48  KKALKIGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISV-------A 100

Query: 129 LLSVTRQLGADVLATG 144
           L+ V R+ GA  LA G
Sbjct: 101 LIEVAREYGAKYLAHG 116


>gi|124485791|ref|YP_001030407.1| hypothetical protein Mlab_0970 [Methanocorpusculum labreanum Z]
 gi|124363332|gb|ABN07140.1| PP-loop domain protein [Methanocorpusculum labreanum Z]
          Length = 300

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 19/127 (14%)

Query: 22  RVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+ V +SGG DS+V   V A L     ++I +T                     +  A R
Sbjct: 51  RIAVGLSGGKDSTVLLTVLAKL-DLDAELIPIT---------VDEGIGGYRDDTILAATR 100

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +CD + ++  +  + +     +         + +    C  C   ++   L    R++GA
Sbjct: 101 LCDKLGLADRLVSFTD-----ICGKTLDELLSNDPRQACSVCGT-LRRRALNQAAREVGA 154

Query: 139 DVLATGH 145
             +ATGH
Sbjct: 155 TKIATGH 161


>gi|74204367|dbj|BAE39937.1| unnamed protein product [Mus musculus]
          Length = 561

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAAYLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANYIGSEHHEVLFNSE 318


>gi|45358916|ref|NP_988473.1| hypothetical protein MMP1353 [Methanococcus maripaludis S2]
 gi|45047782|emb|CAF30909.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 324

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +PKD +++V +SGG DS  +  LL+  R  Y V     Q+Y         G     +   
Sbjct: 73  SPKD-KILVGLSGGKDSLALLHLLEPYRRKYGV-----QIYAVTVDLNINGIRPWTESNK 126

Query: 75  DARRV---CDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDL 129
           +  ++   C  +N+ H +          V+      S    G    PC  C+  V+   L
Sbjct: 127 NVEKIAEHCKNLNIPHKII----AHDGNVVEMSKILSENTKGIEYSPCFSCSM-VRRHVL 181

Query: 130 LSVTR-QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
            +  +    +D    +A GH +            +  + + ++  ++
Sbjct: 182 TNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPIKN 228


>gi|242814184|ref|XP_002486320.1| GMP synthase [Talaromyces stipitatus ATCC 10500]
 gi|218714659|gb|EED14082.1| GMP synthase [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 67/217 (30%), Gaps = 68/217 (31%)

Query: 23  VVVAMSGGVDSSVVAALLK----RDGYDVI---GVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+K       + V+   GV ++L            C   Q    
Sbjct: 235 VLGAVSGGVDSTVAAQLMKTAIGDRFHAVLINNGV-MRL----------DECTQVQ---- 279

Query: 76  ARRVCDTINVSHYVFDYEERFR-----------------NAVIVPFASSYA-----AGET 113
            + +   + ++  + D  E F                     I  F          A  T
Sbjct: 280 -QTLQQHLGINLTIVDGSELFLGRLKGVTEPERKRKIIGETFIDLFEEEAKRIEKEAENT 338

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P          K    L  T             I S  + G     +          R  
Sbjct: 339 PN-------AGKVEWFLQGTL--------YPDVIESLSFKGPSATIKTHHNVGGLPAR-- 381

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                    Q L  L  PL ++ K+ VRDL R++G+ 
Sbjct: 382 -----MMNGQGL-KLIEPLRELFKDEVRDLGRQLGIH 412


>gi|210135204|ref|YP_002301643.1| GMP synthase [Helicobacter pylori P12]
 gi|226739630|sp|B6JMN5|GUAA_HELP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|210133172|gb|ACJ08163.1| gmp synthase [Helicobacter pylori P12]
          Length = 508

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 28/198 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L +   + +V+ A+SGGVDS+VVA LL R           + ++  A           + 
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRA----------IKDNLIAVFVDHGLLRKNEK 252

Query: 74  YDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              + +   + +     D +  F +    V  P       GET +   +  +  K    L
Sbjct: 253 ERVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPELKRKIIGETFIEVFE--KEAK-KHHL 309

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               +  A        I S    G     +                +    +     L  
Sbjct: 310 KGKIEFLAQGTLYPDVIESVSVKGPSKVIKTHHN------------VGGLPEWMDFKLIE 357

Query: 191 PLGDMKKESVRDLAREMG 208
           PL ++ K+  R L +E+G
Sbjct: 358 PLRELFKDEARLLGKELG 375


>gi|119511260|ref|ZP_01630375.1| argininosuccinate synthase [Nodularia spumigena CCY9414]
 gi|119464051|gb|EAW44973.1| argininosuccinate synthase [Nodularia spumigena CCY9414]
          Length = 400

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKNE-----------WGVEEVITLAADLGQGDELEPIRE 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                      V D ++ F          + A  E   P      R +    L+    + 
Sbjct: 52  KALKSGASESLVVDVKDSFVKDYAFAAIQANALYENRYPLGTALARPLIAKILVEAADKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|118470807|ref|YP_885988.1| GMP synthase [Mycobacterium smegmatis str. MC2 155]
 gi|118172094|gb|ABK72990.1| glutamine-hydrolyzing GMP synthase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 520

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 63/204 (30%), Gaps = 45/204 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-- 77
           D R +  +SGGVDS+V AAL++R     IG         + +         +    A+  
Sbjct: 217 DGRAICGLSGGVDSAVAAALVQRA----IG--------DRLTCVFVDHGLLRAGERAQVQ 264

Query: 78  --RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVK-----F 126
              V  T        D  +RF  A           G T  P     +     ++      
Sbjct: 265 RDFVAAT-GAKLVTVDVADRFLEA---------LTGVT-NPEGKRKIIGREFIRAFEGAV 313

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            DL+        D L  G      +  G  G       +           +         
Sbjct: 314 RDLVEDEGSGDIDFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDLKF 364

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL  + K+ VR + RE+GL 
Sbjct: 365 KLVEPLRLLFKDEVRAVGRELGLP 388


>gi|78185875|ref|YP_378309.1| argininosuccinate synthase [Synechococcus sp. CC9902]
 gi|119361337|sp|Q3AVL9|ASSY_SYNS9 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|78170169|gb|ABB27266.1| argininosuccinate synthase [Synechococcus sp. CC9902]
          Length = 403

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R+
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRQ 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  + F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALDAGASQSLVGDLIQPFIEDFAFPAIRANALYEGRYPLSTALARPLIAKRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|56695341|ref|YP_165689.1| NAD synthetase [Ruegeria pomeroyi DSS-3]
 gi|56677078|gb|AAV93744.1| glutamine-dependent NAD(+) synthetase [Ruegeria pomeroyi DSS-3]
          Length = 552

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDS++VAA+     G + +   +                +   + DA  V 
Sbjct: 286 KVLLGLSGGVDSALVAAIATDALGPENVRCVM----------LPSEYTSRSSLDDAEAVA 335

Query: 81  DTINVSHYVFDYEE 94
             + V +      E
Sbjct: 336 QALGVRYDYVPISE 349


>gi|25027171|ref|NP_737225.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium efficiens YS-314]
 gi|44887965|sp|Q8FRZ3|GUAA_COREF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|23492452|dbj|BAC17425.1| GMP synthase [Corynebacterium efficiens YS-314]
          Length = 523

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 219 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  + F + +                 +          L         
Sbjct: 270 VAAT-GAKLVTVDERKAFLDKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLEDSPEGSTV 328

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +         +L  PL  + K+
Sbjct: 329 DFLVQGTLYPDVVESG--GGAGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFKD 379

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 380 EVRAVGRELGLP 391


>gi|297182590|gb|ADI18749.1| NAD synthase [uncultured gamma proteobacterium HF4000_36I10]
          Length = 538

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 21/156 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++  A+     G + V  V +                +G  + DA    
Sbjct: 282 VVLGLSGGIDSALTLAIAVDALGAERVEAVMM-----------PFKYTSGMSLEDAEAEA 330

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGA 138
           +T+ VS+ V   E  +             AG  P+   + N    ++   L++++ + G+
Sbjct: 331 NTLGVSYKVISIEPMYEA--FSEALREEFAGL-PVDKTEENIQSRIRGGLLMAISNKKGS 387

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
            VL TG                  MC    + +D S
Sbjct: 388 LVLTTG---NKSEMAVGYATLYGDMCGGFAVLKDVS 420


>gi|307327840|ref|ZP_07607023.1| NAD+ synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306886552|gb|EFN17555.1| NAD+ synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 584

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAAL     G  +V GV +                +   V DA  + 
Sbjct: 328 VLIGLSGGIDSALVAALACDAVGAQNVYGVAM-----------PSRYSSEHSVADATELA 376

Query: 81  DTINVSHYVFDYEERF 96
               ++         F
Sbjct: 377 RRTGLNFRTVSIAPMF 392


>gi|163736854|ref|ZP_02144272.1| NAD+ synthetase [Phaeobacter gallaeciensis BS107]
 gi|161389458|gb|EDQ13809.1| NAD+ synthetase [Phaeobacter gallaeciensis BS107]
          Length = 552

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGGVDS++VA +     G + +   +                + + + DA  V
Sbjct: 285 KKVLLGLSGGVDSAIVATIAVDALGAENVRCVM----------LPSEYTSQESLDDAEAV 334

Query: 80  CDTINVSHYVFDYEE 94
              + V +      E
Sbjct: 335 AKALGVHYDYVPIAE 349


>gi|116071822|ref|ZP_01469090.1| Argininosuccinate synthase [Synechococcus sp. BL107]
 gi|116065445|gb|EAU71203.1| Argininosuccinate synthase [Synechococcus sp. BL107]
          Length = 403

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R+
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRQ 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  + F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALDAGASQSLVGDLIQPFIEDFAFPAIRANALYEGRYPLSTALARPLIAKRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|32475293|ref|NP_868287.1| argininosuccinate synthase [Rhodopirellula baltica SH 1]
 gi|32445834|emb|CAD78565.1| argininosuccinate synthase [Rhodopirellula baltica SH 1]
          Length = 444

 Score = 47.1 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQD--VYDAR- 77
           V+A SGG+D+SV+   L+  GY+V  V + L      R A   K   C  +   + D R 
Sbjct: 45  VLAYSGGLDTSVILGWLQDQGYEVHCVYVDLGQPCEDRDAIMEKARTCGAKSSRLVDVRE 104

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C        V  ++ ++           Y  G          R +     L V R++G
Sbjct: 105 ELCRDFAFP--VLAWQAKYEQI--------YLLG------TSIARPLISKVCLEVAREVG 148

Query: 138 ADVLATG 144
           A   A G
Sbjct: 149 ATAYAHG 155


>gi|293402297|ref|ZP_06646435.1| putative NAD synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304404|gb|EFE45655.1| putative NAD synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 552

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)

Query: 24  VVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V MSGG+DSSV AALL     +    V G  L   ++R  +K             AR+ 
Sbjct: 256 IVGMSGGLDSSVTAALLVYALGKQ--RVYGYNLATRHNRDITKSN-----------ARQE 302

Query: 80  CDTINVSH 87
              + +++
Sbjct: 303 AQALGIAY 310


>gi|302560983|ref|ZP_07313325.1| phenylalanyl-tRNA synthetase, beta subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302478601|gb|EFL41694.1| phenylalanyl-tRNA synthetase, beta subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 586

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++VAAL     G + V GV++                +     DA  + 
Sbjct: 328 VVIGLSGGIDSALVAALACDAVGAENVYGVSM-----------PSKYSSEHSKDDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               +++     E  F
Sbjct: 377 RRTGLNYRTVAIEPMF 392


>gi|86132328|ref|ZP_01050923.1| GMP synthase (glutamine-hydrolyzing) [Dokdonia donghaensis MED134]
 gi|85817247|gb|EAQ38430.1| GMP synthase (glutamine-hydrolyzing) [Dokdonia donghaensis MED134]
          Length = 515

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           DL     + RV++ +SGGVDS+V A LL + 
Sbjct: 211 DLKDKLGEDRVILGLSGGVDSTVAATLLHKA 241


>gi|329766712|ref|ZP_08258255.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329136967|gb|EGG41260.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 304

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---LYNSRKASKRKGSCCA-GQDVYDARR 78
           V VA+SGG DS    ALL     +VI   ++    +  +  +  +G      + +   + 
Sbjct: 50  VAVAVSGGKDS---LALL-----NVINQ-MKSTHNFRIKAITIDEGIPGYRNEALEIVQE 100

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C  +NV H VF Y+E F +  +    +     +T   C  C   ++   +      +GA
Sbjct: 101 FCAKLNVEHKVFSYKELF-DLTLDEALNLRGNEKT-SSCSICGT-LRRRAIDHAANDIGA 157

Query: 139 DVLATGHYI 147
           DV+ATGH +
Sbjct: 158 DVIATGHNL 166


>gi|327401325|ref|YP_004342164.1| Thiamine biosynthesis protein [Archaeoglobus veneficus SNP6]
 gi|327316833|gb|AEA47449.1| Thiamine biosynthesis protein [Archaeoglobus veneficus SNP6]
          Length = 196

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 50/194 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            M+++  +SGG+DS+V   ++ R G  V  +   +                  V  A R+
Sbjct: 2   QMKILALLSGGIDSAVACYIMLRRGCSVEYLHFSM--------------GSASVNKAIRL 47

Query: 80  CDTINVSHYVFDYEERF----RNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTR 134
              +          + +    R  VI          +    CV C R +   +++L    
Sbjct: 48  ASKL----------KEYGGSGRIFVIPHSRLIELVPKDRYTCVYCKRGMLSIAEML--AE 95

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++G   L TG  +      G    +     R  D                   +  PL  
Sbjct: 96  KIGCAALLTGDSL------GQVASQTIPNLRAEDA-------AVRIP------VLRPLIG 136

Query: 195 MKKESVRDLAREMG 208
             K+ +  +A+E+G
Sbjct: 137 FDKDEIIGIAKEIG 150


>gi|296131894|ref|YP_003639141.1| argininosuccinate synthase [Thermincola sp. JR]
 gi|296030472|gb|ADG81240.1| argininosuccinate synthase [Thermincola potens JR]
          Length = 403

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   LK + GY+VI           A   +G   A  +    +  
Sbjct: 3   KKVVLAYSGGLDTSIIIPWLKENYGYEVIA--------MAADVGQGEELAPLNEKAIKTG 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
              I    Y+ D +E F    + P           Y  G +    +   R      L+ +
Sbjct: 55  ASKI----YIEDLKEEFVTDFVWPTLKAGAVYEGKYLLGTSFARPLIAKR------LVEI 104

Query: 133 TRQLGADVLATG 144
            RQ GA+ +A G
Sbjct: 105 ARQEGAEAVAHG 116


>gi|293189088|ref|ZP_06607814.1| GMP synthase [Actinomyces odontolyticus F0309]
 gi|292821933|gb|EFF80866.1| GMP synthase [Actinomyces odontolyticus F0309]
          Length = 518

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV AAL+ R  G  +    +   +       +                 
Sbjct: 216 VICALSGGVDSSVAAALVHRAVGDQLTCFFI---DHGLLRAGEREQVENDY-------AR 265

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138
            + +     D  ERF +A          AG T  P  +  R +   +        ++   
Sbjct: 266 GMGIRVITCDESERFLSA---------LAGVT-EP--EAKRKIIGREFIRSFEAAQKQVI 313

Query: 139 DVL--ATGHY------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           + +  A G              V   G       +           +    +    +L  
Sbjct: 314 EEVGAAGGEVKFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDMTFELVE 366

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR + RE+GL 
Sbjct: 367 PLRTLFKDEVRAVGRELGLP 386


>gi|301768891|ref|XP_002919862.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like
           [Ailuropoda melanoleuca]
 gi|281350501|gb|EFB26085.1| hypothetical protein PANDA_008523 [Ailuropoda melanoleuca]
          Length = 561

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  +      +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAHVQYPLQTFAIGMEDSTDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           AR+V + I   H+   +       V+     S    +
Sbjct: 299 ARKVANHIGSEHHEVLFNSEEGIQVLDEVIFSLETYD 335


>gi|224372386|ref|YP_002606758.1| PP-loop family protein [Nautilia profundicola AmH]
 gi|223589891|gb|ACM93627.1| PP-loop family protein [Nautilia profundicola AmH]
          Length = 259

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAG 70
           + +   +  RV+VA SGG DS V+  +LKR         +QL    K            G
Sbjct: 24  EFELIKEGDRVMVAFSGGKDSFVMLHVLKR---------MQLIAPFKFDLLAVTIDAGTG 74

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D    ++ C+   + + +      +   ++         G +   C  C   ++   L 
Sbjct: 75  IDYTPLKKHCEEFGIEYII------YETPILEILEEKKRPGSSA--CGFC-ARMRRGALY 125

Query: 131 SVTRQLGADVLATGHY 146
           +   +LG + +A GH+
Sbjct: 126 TKALELGYNKIALGHH 141


>gi|73976415|ref|XP_532473.2| PREDICTED: similar to asparagine synthetase [Canis familiaris]
          Length = 561

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  +      +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAHVQYPLQTFAIGMEDSTDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           AR+V + I   H+   +       V+     S    +
Sbjct: 299 ARKVANHIGSEHHEVLFNSEEGIQVLDEVIFSLETYD 335


>gi|163743987|ref|ZP_02151356.1| NAD synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161382747|gb|EDQ07147.1| NAD synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 552

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGGVDS++VA +     G + +   +                + + + DA  V
Sbjct: 285 KKVLLGLSGGVDSAIVATIAVDALGAENVRCVM----------LPSEYTSQESLDDAEAV 334

Query: 80  CDTINVSHYVFDYEE 94
              + V +      E
Sbjct: 335 AKALGVHYDYVPIAE 349


>gi|299822540|ref|ZP_07054426.1| GMP synthase (glutamine-hydrolyzing) [Listeria grayi DSM 20601]
 gi|299816069|gb|EFI83307.1| GMP synthase (glutamine-hydrolyzing) [Listeria grayi DSM 20601]
          Length = 514

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 38/197 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHQAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V +T+    N++    D ++RF N +                 +  N  +          
Sbjct: 265 VMETLQGEFNMNIIKVDAKDRFLNKLAGVSDPEQKRK------IIGNEFIYV--FDDEAS 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +    +L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFELIEPLN 366

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR L  E+G+ 
Sbjct: 367 TLFKDEVRALGTELGMP 383


>gi|328544366|ref|YP_004304475.1| NAD synthase family [Polymorphum gilvum SL003B-26A1]
 gi|326414108|gb|ADZ71171.1| NAD synthase family [Polymorphum gilvum SL003B-26A1]
          Length = 562

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS+V AA+     G + V GV +                +   + DA    
Sbjct: 297 VILGLSGGIDSAVCAAMAVDALGPERVHGVMM-----------PYRYTSRASIVDAEACA 345

Query: 81  DTINVSHYVF 90
             + + +   
Sbjct: 346 RKLAIRYDTV 355


>gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
          Length = 442

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 66/221 (29%), Gaps = 42/221 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV---C 80
           ++A+SGG DS V  A L R          + +  R+           +   DA  V    
Sbjct: 24  LIAISGGGDS-VALAGLLR----------RYWRGRQVWAHLDHGIRKESSRDALFVSELA 72

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V          V +P       GE+        R V++  L           
Sbjct: 73  SRWGIPCVV--------ERVSLPALRE--RGES---LEMAGRRVRYGFLERTASNASLAF 119

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF--PLGDMKKE 198
           +A  H         DD     ++             ++           +  PL   ++E
Sbjct: 120 IALAHTA-------DDQAETLLLHLARGTG------IWGLAGMPERRGNWVRPLATFRRE 166

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
            +R   RE G+   +   +QD  F++     D++      +
Sbjct: 167 ELRSFLREEGISWVEDLSNQDRMFLRNRVRHDLIPWFETHL 207


>gi|162451952|ref|YP_001614319.1| GMP synthase [Sorangium cellulosum 'So ce 56']
 gi|161162534|emb|CAN93839.1| GMP synthase (glutamine-hydrolysing) [Sorangium cellulosum 'So ce
           56']
          Length = 524

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 40/204 (19%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLY---NSRKASKRKGSCCAG 70
           +K     RV++ +SGGVDSSV A L +R  G  +  + +           S  +      
Sbjct: 222 EKAGPSDRVILGLSGGVDSSVAAVLCQRALGDRLTCIFVDNGLLREGEAESVERTFRGHF 281

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFS 127
               DA              D   RF      V+ P       G   +            
Sbjct: 282 HMNLDA-------------VDASARFLEGLRGVVDPEQKRKVIGRLFIEV---------- 318

Query: 128 DLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                 +++ GA  L  G  +   +      K    + +           +    ++   
Sbjct: 319 -FEEEAKRVQGAKWLVQG-TLYPDVIESVSFKGPSAVIKSHHN-------VGGLPERMNL 369

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR     +G+ 
Sbjct: 370 GLIEPLRELFKDEVRAAGEALGMP 393


>gi|159477301|ref|XP_001696749.1| argininosuccinate synthase [Chlamydomonas reinhardtii]
 gi|158275078|gb|EDP00857.1| argininosuccinate synthase [Chlamydomonas reinhardtii]
          Length = 441

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR  
Sbjct: 41  KKVVLAYSGGLDTSIILKWLQDTYGCEVVTFT-------------ADLGQGEELEPARAK 87

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + + V      D  E F    + P          +Y  G +    +   R +       
Sbjct: 88  AEKMGVKQIFIDDLREEFVRDYVFPMFRANALYEGTYLLGTSIARPLIAKRQI------E 141

Query: 132 VTRQLGADVLATG 144
           + +++GAD ++ G
Sbjct: 142 IAKEVGADAVSHG 154


>gi|114762129|ref|ZP_01441597.1| NAD(+) synthase [Pelagibaca bermudensis HTCC2601]
 gi|114545153|gb|EAU48156.1| NAD(+) synthase [Roseovarius sp. HTCC2601]
          Length = 552

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ MSGGVDS++VA +     G + +   +                +   + DA+   
Sbjct: 286 KVLLGMSGGVDSALVATIAVDALGAENVRCVM----------LPSEYTSEHSLEDAKACA 335

Query: 81  DTINVSHYVFDYE 93
           + +   HY  D+ 
Sbjct: 336 ENLGC-HY--DFV 345


>gi|119719071|ref|YP_919566.1| phosphoadenosine phosphosulfate reductase [Thermofilum pendens Hrk
           5]
 gi|119524191|gb|ABL77563.1| phosphoadenosine phosphosulfate reductase [Thermofilum pendens Hrk
           5]
          Length = 353

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 38/200 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K   V+  +SGG DS+    LL K     G+ V  V + +                +++ 
Sbjct: 87  KGKHVMADLSGGKDSTANLYLLTKLQEIVGFKVTAVYVHM----------PYLEPVENIA 136

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A +V   + V   +    E  R  +             P         +K   L    +
Sbjct: 137 FAEKVASRLGVDLRIV---EPDRRKLEFYLLRE----GLPKRGDRWCTYLKTRALREAKK 189

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           ++GA+V A             +  +R      +   +   YF               + D
Sbjct: 190 EIGAEVEAKAERAL-------EAGKRYERLSGLAKRK--VYFNGGVVNL--------VHD 232

Query: 195 MKKESVRDLAREMGLDIADK 214
           +    V  + R  GL     
Sbjct: 233 LSAAEVAGIVRRAGLVHPHY 252


>gi|307244690|ref|ZP_07526793.1| argininosuccinate synthase [Peptostreptococcus stomatis DSM 17678]
 gi|306491941|gb|EFM63991.1| argininosuccinate synthase [Peptostreptococcus stomatis DSM 17678]
          Length = 424

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   LK       VI V                     D+   + 
Sbjct: 22  TKVVLAYSGGLDTSVIIPWLKENYQNCQVIAV-----------CGDVGQGDELDIVYEKA 70

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +        Y+ D ++ F    + P           Y  G +        R +    L+ 
Sbjct: 71  LKSGAG-KCYIVDLKKEFVKDFVWPVIKAGSKYEGKYLLGTSVA------RPLIAKALVD 123

Query: 132 VTRQLGADVLATG 144
           V ++ GA  +  G
Sbjct: 124 VAKKEGAQYICHG 136


>gi|167719548|ref|ZP_02402784.1| argininosuccinate synthase [Burkholderia pseudomallei DM98]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|126724597|ref|ZP_01740440.1| argininosuccinate synthase [Rhodobacterales bacterium HTCC2150]
 gi|126705761|gb|EBA04851.1| argininosuccinate synthase [Rhodobacterales bacterium HTCC2150]
          Length = 405

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P   +       Y  G +    +   R      L+
Sbjct: 51  KAEMMGASEIFIEDVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKR------LV 104

Query: 131 SVTRQLGADVLATG 144
            + RQ GAD +A G
Sbjct: 105 EIARQTGADAVAHG 118


>gi|172037669|ref|YP_001804170.1| NAD synthetase [Cyanothece sp. ATCC 51142]
 gi|171699123|gb|ACB52104.1| NH(3)-dependent NAD(+) synthetase [Cyanothece sp. ATCC 51142]
          Length = 562

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 24/130 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DSS+VAA+     G + V+G+ +                +   + DA  +
Sbjct: 306 KAVLGLSGGIDSSLVAAIAAEALGKENVLGILM-----------PSPYSSSHSISDAEAL 354

Query: 80  CDTINVSHYVF---DYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTR 134
            + + +  Y     D  + + ++++ P       G       + N    ++ + L+++  
Sbjct: 355 VNNLGIKRYTLPIKDVMKAY-DSILEPLFKGTEFG-----VAEENLQSRIRGNLLMAIAN 408

Query: 135 QLGADVLATG 144
           + G  +L+TG
Sbjct: 409 KFGHLLLSTG 418


>gi|167894235|ref|ZP_02481637.1| argininosuccinate synthase [Burkholderia pseudomallei 7894]
 gi|167918897|ref|ZP_02505988.1| argininosuccinate synthase [Burkholderia pseudomallei BCC215]
 gi|237812294|ref|YP_002896745.1| argininosuccinate synthase [Burkholderia pseudomallei MSHR346]
 gi|237504054|gb|ACQ96372.1| argininosuccinate synthase [Burkholderia pseudomallei MSHR346]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|167845666|ref|ZP_02471174.1| argininosuccinate synthase [Burkholderia pseudomallei B7210]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|167824128|ref|ZP_02455599.1| argininosuccinate synthase [Burkholderia pseudomallei 9]
 gi|167910874|ref|ZP_02497965.1| argininosuccinate synthase [Burkholderia pseudomallei 112]
 gi|226197489|ref|ZP_03793066.1| argininosuccinate synthase [Burkholderia pseudomallei Pakistan 9]
 gi|254297620|ref|ZP_04965073.1| argininosuccinate synthase [Burkholderia pseudomallei 406e]
 gi|157807086|gb|EDO84256.1| argininosuccinate synthase [Burkholderia pseudomallei 406e]
 gi|225930868|gb|EEH26878.1| argininosuccinate synthase [Burkholderia pseudomallei Pakistan 9]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|167738526|ref|ZP_02411300.1| argininosuccinate synthase [Burkholderia pseudomallei 14]
 gi|217421838|ref|ZP_03453342.1| argininosuccinate synthase [Burkholderia pseudomallei 576]
 gi|254188831|ref|ZP_04895342.1| argininosuccinate synthase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157936510|gb|EDO92180.1| argininosuccinate synthase [Burkholderia pseudomallei Pasteur
           52237]
 gi|217395580|gb|EEC35598.1| argininosuccinate synthase [Burkholderia pseudomallei 576]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|53719335|ref|YP_108321.1| putative argininosuccinate synthase [Burkholderia pseudomallei
           K96243]
 gi|76811104|ref|YP_333547.1| argininosuccinate synthase [Burkholderia pseudomallei 1710b]
 gi|126440368|ref|YP_001059031.1| argininosuccinate synthase [Burkholderia pseudomallei 668]
 gi|126451449|ref|YP_001066281.1| argininosuccinate synthase [Burkholderia pseudomallei 1106a]
 gi|167815748|ref|ZP_02447428.1| argininosuccinate synthase [Burkholderia pseudomallei 91]
 gi|167902629|ref|ZP_02489834.1| argininosuccinate synthase [Burkholderia pseudomallei NCTC 13177]
 gi|242315613|ref|ZP_04814629.1| argininosuccinate synthase [Burkholderia pseudomallei 1106b]
 gi|254179769|ref|ZP_04886368.1| argininosuccinate synthase [Burkholderia pseudomallei 1655]
 gi|254198046|ref|ZP_04904468.1| argininosuccinate synthase [Burkholderia pseudomallei S13]
 gi|254261265|ref|ZP_04952319.1| argininosuccinate synthase [Burkholderia pseudomallei 1710a]
 gi|68566240|sp|Q63U95|ASSY_BURPS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|52209749|emb|CAH35720.1| putative argininosuccinate synthase [Burkholderia pseudomallei
           K96243]
 gi|76580557|gb|ABA50032.1| argininosuccinate synthase [Burkholderia pseudomallei 1710b]
 gi|126219861|gb|ABN83367.1| argininosuccinate synthase [Burkholderia pseudomallei 668]
 gi|126225091|gb|ABN88631.1| argininosuccinate synthase [Burkholderia pseudomallei 1106a]
 gi|169654787|gb|EDS87480.1| argininosuccinate synthase [Burkholderia pseudomallei S13]
 gi|184210309|gb|EDU07352.1| argininosuccinate synthase [Burkholderia pseudomallei 1655]
 gi|242138852|gb|EES25254.1| argininosuccinate synthase [Burkholderia pseudomallei 1106b]
 gi|254219954|gb|EET09338.1| argininosuccinate synthase [Burkholderia pseudomallei 1710a]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LKR            +   + +    +    +D    +R
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKR------------HFDCRVTAYCANLGQKEDWERMKR 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + A+ E      TPL      R      L+ 
Sbjct: 50  RAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLA-----RPAIVKGLIE 104

Query: 132 VTRQLGADVLATG 144
             R+   D L+ G
Sbjct: 105 YARKHDVDCLSHG 117


>gi|237802640|ref|YP_002887834.1| hypothetical protein JALI_2111 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273874|emb|CAX10665.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 254

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 64/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+ VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 33  KHTRIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 86  YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDTA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 128 KAVGATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPVVDMVNFGITI----LRPLIFIPE 183

Query: 194 DMKKESVRDLAREMGLD 210
           D+    +R  A E G  
Sbjct: 184 DL----IRKFAMESGFA 196


>gi|158422369|ref|YP_001523661.1| argininosuccinate synthase [Azorhizobium caulinodans ORS 571]
 gi|172048046|sp|A8IQ54|ASSY_AZOC5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|158329258|dbj|BAF86743.1| argininosuccinate synthase [Azorhizobium caulinodans ORS 571]
          Length = 408

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSVILKWLQTT-YRCEVVTF-----------TADLGQGEELEPARKKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
           + + +     ++ D  E F    + P           Y  G +    +   + +      
Sbjct: 54  ELLGIKPENIFIEDVREEFVRDYVFPMFRANAVYEGQYLLGTSIARPLIAKKQI------ 107

Query: 131 SVTRQLGADVLATG 144
            + R++GAD ++ G
Sbjct: 108 EIARKVGADAVSHG 121


>gi|18310394|ref|NP_562328.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens str. 13]
 gi|20140598|sp|Q8XKI3|THII_CLOPE RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|18145074|dbj|BAB81118.1| probable thiamin biosynthesis protein [Clostridium perfringens str.
           13]
          Length = 385

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 36/204 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         ++ +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELSEKKKIQSITT 283

Query: 144 GHYIRSR-------LYVGDDGKRRRIMCRP---------MDLERD-QSYFLFATTQQQLC 186
           G  I          L V +D   R +  RP         MD+ RD  +Y       +  C
Sbjct: 284 GESIGQVASQTMEGLIVSNDASDRPV-FRPLIAMDKEDIMDIARDIDTYETSILPYED-C 341

Query: 187 DLRF-PLGDMKKESVRD--LAREM 207
              F P     K  V+D  +A   
Sbjct: 342 CTIFVPKHPKTKPRVKDMIIAERK 365


>gi|238063962|ref|ZP_04608671.1| argininosuccinate synthase [Micromonospora sp. ATCC 39149]
 gi|237885773|gb|EEP74601.1| argininosuccinate synthase [Micromonospora sp. ATCC 39149]
          Length = 401

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    L      ++I V                   G+D+   R+  
Sbjct: 4   RVVLAYSGGLDTSVAIPYLAEQTNAEIIAV------------AVDVGQGGEDLDAIRQRA 51

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                V   V D  + F     +P   + A      P V   +R +    L++  R+ G 
Sbjct: 52  LDCGAVESEVVDARDEFAAEYCLPAMRANALYMDRYPLVSALSRPLIVKHLVAAARKHGG 111

Query: 139 DVLATG 144
            +++ G
Sbjct: 112 TIVSHG 117


>gi|257387221|ref|YP_003176994.1| NAD synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169528|gb|ACV47287.1| NAD+ synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 277

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 43/190 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC- 80
           ++ +SGG+DS++ + L     G  +V G+ +                   ++ DA RV  
Sbjct: 47  IIGLSGGIDSTLTSHLAVEALGAANVYGLVM-----------PSEVNREANMSDAERVAS 95

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +++ + V + E      +   F   Y   E     V  N  V+   +L+       D 
Sbjct: 96  ELLDIEYDVIEVEP-----IADAFLDGYPDAEGDQLAVG-NLRVRCRAVLNYLAANHRDS 149

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G   RS   VG                    YF         C    P+ ++ K  V
Sbjct: 150 IVLGTGNRSEALVG--------------------YFTKYGDGAVDCH---PIANLYKGQV 186

Query: 201 RDLAREMGLD 210
           R LA  +G+ 
Sbjct: 187 RQLATHVGVP 196


>gi|225850787|ref|YP_002731021.1| PP-loop domain protein [Persephonella marina EX-H1]
 gi|225644978|gb|ACO03164.1| PP-loop domain protein [Persephonella marina EX-H1]
          Length = 315

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  R++VA+SGG DS +    +L + GY+  G  + L   + +   K             
Sbjct: 58  KKDRILVAVSGGKDS-LTLWNVLTKLGYEADGFYIDLGIDQYSEDSKNLSL--------- 107

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R  + I    ++   ++      I P             C  C    ++  +    +QLG
Sbjct: 108 RFSERIGRPLHIISLKDE-----IAP-IPVIDKSTNKPACSACGTAKRY-YMNRYAKQLG 160

Query: 138 ADVLATGHYI 147
            +++ATGH +
Sbjct: 161 YNIIATGHNL 170


>gi|284992813|ref|YP_003411367.1| GMP synthase large subunit [Geodermatophilus obscurus DSM 43160]
 gi|284066058|gb|ADB76996.1| GMP synthase, large subunit [Geodermatophilus obscurus DSM 43160]
          Length = 520

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 62/202 (30%), Gaps = 39/202 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R + A+SGGVDS+V AAL++R  G  +  V            R+G     +   D   
Sbjct: 215 DRRALCALSGGVDSAVAAALVQRAIGDRLTCVY-----VDHGLMREGETEQIE--RDFVA 267

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQ 135
           V         V D  E+F  A+             G                        
Sbjct: 268 VT---GADLRVVDAREQFLGALAGISDPEQKRKTIGREF-----------IRVFEQAALD 313

Query: 136 LGADVLATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           + AD  A G  +   +        V   G       +           +    +     L
Sbjct: 314 VVADAKAHGETVDFLVQGTLYPDVVESGGGTGTANIKSHHN-------VGGLPEDLTFTL 366

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR++  ++GL 
Sbjct: 367 VEPLRTLFKDEVREVGLQLGLP 388


>gi|328950301|ref|YP_004367636.1| Argininosuccinate synthase [Marinithermus hydrothermalis DSM 14884]
 gi|328450625|gb|AEB11526.1| Argininosuccinate synthase [Marinithermus hydrothermalis DSM 14884]
          Length = 398

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 57/211 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++V+A SGG+D+S++   LK   G +VI  T                  G++V +AR+ 
Sbjct: 1   MKIVLAYSGGLDTSIILKWLKETYGAEVIAFT-------------ADIGQGEEVEEARQK 47

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
                    Y  D +E F    + P   +       Y  G +        R +    L++
Sbjct: 48  ALATGATKAYALDLKEEFVREFVFPMMRAAPLYEGYYLLGTSIA------RPLIAKHLVA 101

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
           +  + GA+ ++ G                           DQ  F    T   L     +
Sbjct: 102 IAEREGAEAISHG---------------------ATGKGNDQVRF--ELTAYALKPGIRV 138

Query: 189 RFPLGDMK---KESVRDLAREMGLDIADKSD 216
             P  +     +  +   A++ G+ +   ++
Sbjct: 139 IAPWREWHFKGRSEMIAYAQDHGIPVPVTTE 169


>gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
 gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
          Length = 482

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 40/198 (20%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+VVA+SGG DS V    +L      VI + LQL  +      +      +   + R + 
Sbjct: 28  RIVVAVSGGPDS-VALLHILHE--ISVIHMPLQLVCAHVHHGFRPEESDAEA-EEVRNIA 83

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   +       R  V      S   G+ P       R ++++ L  +  +  A  
Sbjct: 84  RKLELPFEMT------RVDVPAYMKES---GKGPQEAA---RELRYNFLHDMATKWEAQH 131

Query: 141 LATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCD------LRFPL 192
           +A  H+       GDD        + R                  +L        L  PL
Sbjct: 132 IAMAHH-------GDDQAETVLLHLLRGSGP--------AGLAGMRLARREKNVQLIRPL 176

Query: 193 GDMKKESVRDLAREMGLD 210
             M K  + +      L 
Sbjct: 177 LRMYKADLIEFCNFYNLS 194


>gi|289704499|ref|ZP_06500934.1| argininosuccinate synthase [Micrococcus luteus SK58]
 gi|289558757|gb|EFD52013.1| argininosuccinate synthase [Micrococcus luteus SK58]
          Length = 413

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R+++A SGG+D+SV    +        G       +   +        G+ +   R+   
Sbjct: 4   RIILAYSGGLDTSVAIGWIGEA----TG-------AEVVAVAVDVGQGGESLETIRQRAL 52

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V  YV D  + F     +P   + A      P V   +R V    L++  RQ GA 
Sbjct: 53  DCGAVEAYVADARDEFAEQYCMPTLKANALYMDAYPLVSAISRPVISRHLVAAARQFGAS 112

Query: 140 VLATG 144
            +A G
Sbjct: 113 TVAHG 117


>gi|227824492|ref|ZP_03989324.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904991|gb|EEH90909.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 250

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 54/200 (27%)

Query: 22  RVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RV +A SGGVDS+     AA   +    V   T+             +     ++  A+ 
Sbjct: 15  RVAIAFSGGVDSTYLVTAAAQYAQS---VHAYTI-----------DSAFVPRFELEGAKA 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQ 135
           +   I ++H +   +      V+              P   C  C + V FS +    ++
Sbjct: 61  LTKKIGITHTLLPIDVLQNETVVQ------------NPKDRCYFCKKAV-FSTIWKAAKK 107

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G ++L  G                       D   D+           L  LR  L  +
Sbjct: 108 DGYNLLLDG-------------------TNASDDASDRPGMKALAELDVLSPLR--LCGL 146

Query: 196 KKESVRDLAREMGLDIADKS 215
            K  +R+ +R +GL   +K 
Sbjct: 147 TKSLIRERSRALGLPTWNKP 166


>gi|187927783|ref|YP_001898270.1| exsB protein [Ralstonia pickettii 12J]
 gi|254764370|sp|B2U7H6|QUEC_RALPJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|187724673|gb|ACD25838.1| exsB protein [Ralstonia pickettii 12J]
          Length = 224

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+   DG++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANADGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|110802816|ref|YP_699536.1| GMP synthase [Clostridium perfringens SM101]
 gi|110683317|gb|ABG86687.1| GMP synthase [Clostridium perfringens SM101]
          Length = 509

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D +++ A+SGGVDSSV A ++ +  G  +  +     +     K +G      
Sbjct: 207 EIKKIVGDKKLICALSGGVDSSVAAVMVHKAVGKQLTCIF---VDHGLLRKDEGDQVEKI 263

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  +++    + ++RF   +                 +     ++      
Sbjct: 264 FK-------EGFDMNLIRVNAQDRFLGKLKGVSDPETKRK------IIGEEFIRV--FEE 308

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +LG    L  G        V + G     + +           +    +     L  
Sbjct: 309 EAGKLGDIKFLVQG---TIYPDVVESGTDTSAVIKSHHN-------VGGLPEDMEFSLIE 358

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+G+ 
Sbjct: 359 PLRELFKDEVRAVGEELGIP 378


>gi|94311604|ref|YP_584814.1| ExsB [Cupriavidus metallidurans CH34]
 gi|110816250|sp|Q1LJY1|QUEC_RALME RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|93355456|gb|ABF09545.1| Queuosine biosynthesis protein queC [Cupriavidus metallidurans
          CH34]
          Length = 227

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +V +SGG+DS+ V A+    G++   ++++                  ++  A+RV 
Sbjct: 3  KRAIVLLSGGLDSATVLAMANAAGFETYALSMRY-----------GQRHSSELEAAKRVA 51

Query: 81 DTINVS-HYVFDY 92
            +    H + D 
Sbjct: 52 AELGAKRHEIIDL 64


>gi|126730056|ref|ZP_01745868.1| NAD synthetase [Sagittula stellata E-37]
 gi|126709436|gb|EBA08490.1| NAD synthetase [Sagittula stellata E-37]
          Length = 562

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ MSGGVDS++VA +     G + +   +                +   + DA+   
Sbjct: 296 KVLLGMSGGVDSALVATIAVDALGAENVRCVM----------LPSEYTSEHSLEDAKACA 345

Query: 81  DTINVSHYVF 90
           + +   +   
Sbjct: 346 NALGCRYDFV 355


>gi|77464790|ref|YP_354294.1| argininosuccinate synthase [Rhodobacter sphaeroides 2.4.1]
 gi|126463633|ref|YP_001044747.1| argininosuccinate synthase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640709|ref|YP_002526971.1| argininosuccinate synthase [Rhodobacter sphaeroides KD131]
 gi|119361315|sp|Q3IYJ1|ASSY_RHOS4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|166221012|sp|A3PNQ9|ASSY_RHOS1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807530|sp|B9KPT5|ASSY_RHOSK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|77389208|gb|ABA80393.1| argininosuccinate synthase [Rhodobacter sphaeroides 2.4.1]
 gi|126105297|gb|ABN77975.1| argininosuccinate synthase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161490|gb|ACM02470.1| Argininosuccinate synthase [Rhodobacter sphaeroides KD131]
          Length = 408

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARE 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
               + +     ++ D  E F    + P   + A  E          R +    L+ +  
Sbjct: 51  KAVMLGIKPENIFIEDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLIAKRLVEIAA 110

Query: 135 QLGADVLATG 144
           Q GAD +A G
Sbjct: 111 QTGADAVAHG 120


>gi|167626771|ref|YP_001677271.1| argininosuccinate synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596772|gb|ABZ86770.1| Argininosuccinate synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 418

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 47/206 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R ++  SGG+D+SV+   ++ + G +V+ +T+ +                 ++   ++ 
Sbjct: 19  TRCLLLYSGGLDTSVMLKWIQEEYGVEVVALTIDI------------GQVADNLEQIKQK 66

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFA---SSYAAG---ETPLPCVDCNRTVKFSDLLSV 132
              +  +   V+D ++RF N VI       + Y  G    TPL      R +     + V
Sbjct: 67  AINLGAIDAVVYDAKDRFANEVISKAIKANADYQGGYALSTPL-----GRVIISEIAVEV 121

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            ++    V+A G                    +  D  R +SY L             P+
Sbjct: 122 AKKYDCQVVAHG-----------------CTGKGNDQVRFESY-LTTLDDNI--KTIAPV 161

Query: 193 --GDMKKESVRDLAREMGLDIADKSD 216
               M +E   + A + G+ +  + D
Sbjct: 162 REWGMGREQELEYAEKHGIPVKQQKD 187


>gi|88800511|ref|ZP_01116074.1| NAD(+) synthetase [Reinekea sp. MED297]
 gi|88776742|gb|EAR07954.1| NAD(+) synthetase [Reinekea sp. MED297]
          Length = 323

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 70/218 (32%), Gaps = 49/218 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DSSV AAL  R  G + V+G+ +                      D+R++ D
Sbjct: 39  VVGLSGGIDSSVCAALAVRAIGPERVLGLMM---------------PEADSSDDSRKLAD 83

Query: 82  ----TINVSHY------VFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
                + +           D  + +  R+  I      Y +       +        +  
Sbjct: 84  VLVQHLGIEAQLEDITATLDGLDCYRRRDEAIRIALPEYQSDWKSKIVLSGASQGLINHF 143

Query: 130 -----------LSVTRQLGAD---VLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERD 172
                            L A    V AT    R R    Y   D +   ++  P  LE D
Sbjct: 144 TVVAESPDGQRFEAALPLKAYLSIVAATNFKQRVRKTMEYFHADARNYAVVGTPNRLEYD 203

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           Q +F+             P+  + K  V  +AR + L 
Sbjct: 204 QGFFVKNGDG---AADIKPISHLYKSQVYAMARYLELP 238


>gi|317501433|ref|ZP_07959632.1| argininosuccinate synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088088|ref|ZP_08337009.1| argininosuccinate synthase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316897177|gb|EFV19249.1| argininosuccinate synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409044|gb|EGG88503.1| argininosuccinate synthase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 411

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYD---VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +VV+A SGG+D+SV+   LK   YD   VI V   +    +    K            R
Sbjct: 5   KKVVLAYSGGLDTSVIIPWLKEH-YDNCEVIAVCGNVGQDDELDDLKQ-----------R 52

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLS 131
            V    +   YV D  + F N  ++P          Y  G +    +   R +       
Sbjct: 53  AVASGAS-KLYVEDLTDEFVNEFVIPTMQAGADYEGYLLGTSLARPILAKRVM------E 105

Query: 132 VTRQLGADVLATG 144
           + +  GAD +  G
Sbjct: 106 IAKAEGADAVCHG 118


>gi|218249092|ref|YP_002374463.1| argininosuccinate synthase [Cyanothece sp. PCC 8801]
 gi|257062179|ref|YP_003140067.1| argininosuccinate synthase [Cyanothece sp. PCC 8802]
 gi|226729174|sp|B7JVH4|ASSY_CYAP8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|218169570|gb|ACK68307.1| Argininosuccinate synthase [Cyanothece sp. PCC 8801]
 gi|256592345|gb|ACV03232.1| argininosuccinate synthase [Cyanothece sp. PCC 8802]
          Length = 399

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +  ++          G ++   + 
Sbjct: 3   RADKVVLAYSGGVDTSVCIPYLKNE-----------WGVKEVITLAADLGQGDELGPIQA 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V + +E F          + A  E   P      R +    L+    + 
Sbjct: 52  KALRCGAVESLVTNAQEEFVTEYAFRAIKANALYENRYPLSTALARPLIAKLLVEAAEKY 111

Query: 137 GADVLATGHYIRSRLYVGDD 156
           GAD +A G   +    V  D
Sbjct: 112 GADAVAHGCTAKGNDQVRFD 131


>gi|241662344|ref|YP_002980704.1| exsB protein [Ralstonia pickettii 12D]
 gi|309780843|ref|ZP_07675584.1| ExsB protein [Ralstonia sp. 5_7_47FAA]
 gi|240864371|gb|ACS62032.1| exsB protein [Ralstonia pickettii 12D]
 gi|308920525|gb|EFP66181.1| ExsB protein [Ralstonia sp. 5_7_47FAA]
          Length = 224

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +V +SGG+DS+ V A+   DG++   ++++                  ++  A++V
Sbjct: 2  KKRAIVLLSGGLDSATVLAMANADGFETYALSMRY-----------GQRHSSELEAAKKV 50

Query: 80 CDTIN-VSHYVFDY 92
             +  V H + D 
Sbjct: 51 AAALGAVRHEIVDL 64


>gi|153813937|ref|ZP_01966605.1| hypothetical protein RUMTOR_00144 [Ruminococcus torques ATCC 27756]
 gi|145848333|gb|EDK25251.1| hypothetical protein RUMTOR_00144 [Ruminococcus torques ATCC 27756]
          Length = 446

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYD---VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +VV+A SGG+D+SV+   LK   YD   VI V   +    +    K            R
Sbjct: 40  KKVVLAYSGGLDTSVIIPWLKEH-YDNCEVIAVCGNVGQDDELDDLKQ-----------R 87

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLS 131
            V    +   YV D  + F N  ++P          Y  G +    +   R +       
Sbjct: 88  AVASGAS-KLYVEDLTDEFVNEFVIPTMQAGADYEGYLLGTSLARPILAKRVM------E 140

Query: 132 VTRQLGADVLATG 144
           + +  GAD +  G
Sbjct: 141 IAKAEGADAVCHG 153


>gi|78777588|ref|YP_393903.1| hypothetical protein Suden_1391 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498128|gb|ABB44668.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 260

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 29/151 (19%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLY 55
           ++S+  + N+L  +   +  +++V +SGG DS  +   LK         ++ I VT+   
Sbjct: 17  IMSKLGKTNAL-FNLIEEGDKILVGLSGGKDSLTLIHALKEQQRRAPFKFEFIAVTI--- 72

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                     S   G++    +  C    + + V+D        +            +  
Sbjct: 73  ----------SYGMGENYEKLKAHCKEHKIDYEVYD------TNIYDIAEDKIRKNSSF- 115

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            C   +R ++   L S  ++ G + +A GH+
Sbjct: 116 -CSFFSR-MRRGSLYSAAQKYGCNKVALGHH 144


>gi|332188159|ref|ZP_08389888.1| argininosuccinate synthase [Sphingomonas sp. S17]
 gi|332011766|gb|EGI53842.1| argininosuccinate synthase [Sphingomonas sp. S17]
          Length = 406

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            RVV+A SGG+D+SV+   L++  G +V+  T                  G+++  AR+ 
Sbjct: 6   KRVVLAYSGGLDTSVILKWLQQHYGCEVVTFT-------------ADLGQGEELEPARKK 52

Query: 80  CDTINV-SHYVF--DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
            +   V   ++F  D  E F    + P   +       Y  G +    +   R +     
Sbjct: 53  AEMAGVKPEHIFIDDLREEFVKDYVFPMMRANALYEGLYLLGTSIARPLIAKRQI----- 107

Query: 130 LSVTRQLGADVLATG 144
             + + + AD ++ G
Sbjct: 108 -EIAKMVNADAVSHG 121


>gi|298247183|ref|ZP_06970988.1| NAD+ synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297549842|gb|EFH83708.1| NAD+ synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 672

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 30/122 (24%)

Query: 5   EATRLNSLDLDKNPKD---MRVVVAMSGGVDSSVVAALLKRDGYD--------VIGVTLQ 53
           E   L S+ L K  K      + +A+SGG+DS++ A L+ +  ++        ++ +T+ 
Sbjct: 360 EIFHLQSMGLAKRLKHTGIKNITIALSGGLDSTL-ALLVVQQAFEILELPREGIVAITM- 417

Query: 54  LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
                      G     +   +A R+ +++ +S           +AV+  F      G  
Sbjct: 418 ----------PGFGTTNRTRSNAERLAESLGISLRQIPIR----DAVLQHFKDI---GHD 460

Query: 114 PL 115
           P 
Sbjct: 461 PN 462


>gi|84514902|ref|ZP_01002265.1| argininosuccinate synthase [Loktanella vestfoldensis SKA53]
 gi|84511061|gb|EAQ07515.1| argininosuccinate synthase [Loktanella vestfoldensis SKA53]
          Length = 405

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 16/128 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
             + +     Y+ D  E F    + P   + A  E          R +    L+ +    
Sbjct: 51  KAEMMGAKSIYIEDLREEFVRDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAAIE 110

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 111 GADAVAHG 118


>gi|313682542|ref|YP_004060280.1| preq(0) biosynthesis protein quec [Sulfuricurvum kujiense DSM
          16994]
 gi|313155402|gb|ADR34080.1| preQ(0) biosynthesis protein QueC [Sulfuricurvum kujiense DSM
          16994]
          Length = 221

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 13/75 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + +  MSGG+DS++VA +++  GY+++ +              G     +++   R +C
Sbjct: 3  KKALCIMSGGMDSTLVAYIMRSRGYEIVALHF----------NYGQRTVAKELSCFREIC 52

Query: 81 DTINV--SHYV-FDY 92
            + V   + +  D+
Sbjct: 53 KDLGVNEKYEIDLDF 67


>gi|325679361|ref|ZP_08158946.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8]
 gi|324108958|gb|EGC03189.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8]
          Length = 444

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTL-QLYNSRKASKRKGSCCAGQDVYD 75
           K  R++V +SGG DS   A LL     GYDV    +       +A + +  C        
Sbjct: 21  KGERLLVGLSGGADS--AALLLCLDELGYDVSACHVNHCIRGEEADRDQHFC-------- 70

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             R+C+ + +   V          V      +Y     P+   +  R ++++ L    ++
Sbjct: 71  -ERLCEGLGIGIIV--------RRV---DVPAYCRAN-PVSEEEGARLLRYNAL----QE 113

Query: 136 LGADVLATGHYI 147
           + AD + T H +
Sbjct: 114 ISADKICTAHNL 125


>gi|311747869|ref|ZP_07721654.1| GMP synthase [Algoriphagus sp. PR1]
 gi|126575862|gb|EAZ80172.1| GMP synthase [Algoriphagus sp. PR1]
          Length = 509

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           DL +     +VV+ +SGGVDSSV A L+ R  G  +  V 
Sbjct: 206 DLKEKIGSDKVVMGLSGGVDSSVAATLIHRAIGDQLTCVF 245


>gi|62185135|ref|YP_219920.1| hypothetical protein CAB507 [Chlamydophila abortus S26/3]
 gi|62148202|emb|CAH63959.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 254

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 36/194 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            ++VVA+SGG DS +   L+ +     G        +L         K SC +       
Sbjct: 35  TKIVVALSGGKDS-LSLLLMLKAISGRG------FPKLDLYAVNIGGKYSCGSEVSKQYL 87

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +CD I+V +          ++V  P+            C  C++ V+   L    + +
Sbjct: 88  ANICDKIHVPY----------SSVTSPYDPEVP------ECYSCSQ-VRRRLLFQAAKDV 130

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  +A GH+    +         +     M    D  +F        L  L F      
Sbjct: 131 GATAVAFGHHRDDVVQTALMNLLHKAEFAGMLPVLDMVHFGITI----LRPLIFTPESY- 185

Query: 197 KESVRDLAREMGLD 210
              +R  A+E G  
Sbjct: 186 ---IRKFAKESGFA 196


>gi|18311257|ref|NP_563191.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium perfringens str. 13]
 gi|110800712|ref|YP_696947.1| GMP synthase [Clostridium perfringens ATCC 13124]
 gi|168205103|ref|ZP_02631108.1| GMP synthase [Clostridium perfringens E str. JGS1987]
 gi|168211656|ref|ZP_02637281.1| GMP synthase [Clostridium perfringens B str. ATCC 3626]
 gi|168213184|ref|ZP_02638809.1| GMP synthase [Clostridium perfringens CPE str. F4969]
 gi|168216761|ref|ZP_02642386.1| GMP synthase [Clostridium perfringens NCTC 8239]
 gi|24211752|sp|Q8XI46|GUAA_CLOPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|18145940|dbj|BAB81981.1| GMP synthetase [Clostridium perfringens str. 13]
 gi|110675359|gb|ABG84346.1| GMP synthase [Clostridium perfringens ATCC 13124]
 gi|170663325|gb|EDT16008.1| GMP synthase [Clostridium perfringens E str. JGS1987]
 gi|170710386|gb|EDT22568.1| GMP synthase [Clostridium perfringens B str. ATCC 3626]
 gi|170715290|gb|EDT27472.1| GMP synthase [Clostridium perfringens CPE str. F4969]
 gi|182381223|gb|EDT78702.1| GMP synthase [Clostridium perfringens NCTC 8239]
          Length = 509

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D +++ A+SGGVDSSV A ++ +  G  +  +     +     K +G      
Sbjct: 207 EIKKIVGDKKLICALSGGVDSSVAAVMVHKAVGKQLTCIF---VDHGLLRKDEGDQVEKI 263

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  +++    + ++RF   +                 +     ++      
Sbjct: 264 FK-------EGFDMNLIRVNAQDRFLGKLKGVSDPETKRK------IIGEEFIRV--FEE 308

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +LG    L  G        V + G     + +           +    +     L  
Sbjct: 309 EAGKLGDIKFLVQG---TIYPDVVESGTDTSAVIKSHHN-------VGGLPEDMEFSLIE 358

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+G+ 
Sbjct: 359 PLRELFKDEVRAVGEELGIP 378


>gi|332181018|gb|AEE16706.1| Argininosuccinate synthase [Treponema brennaborense DSM 12168]
          Length = 421

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              +V++A SGG+D++V+   LK +  YDVI V + +           +    + +    
Sbjct: 2   SKDKVILAYSGGLDTTVIIPWLKENYDYDVIAVCIDVGQGDD-----WNVIKKRALDTGA 56

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGE-TPLPCVDCNRTVKFSDL 129
             C       YV D  E +    I P           Y  G  T  P +          L
Sbjct: 57  AAC-------YVVDAREEYITEYIWPALKANAVYEDRYLLGTSTARPLIG-------KIL 102

Query: 130 LSVTRQLGADVLATG 144
           +   RQ  A  +  G
Sbjct: 103 VEYARQEKAVAICHG 117


>gi|302386913|ref|YP_003822735.1| Rhodanese domain protein [Clostridium saccharolyticum WM1]
 gi|302197541|gb|ADL05112.1| Rhodanese domain protein [Clostridium saccharolyticum WM1]
          Length = 396

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 34/137 (24%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            ++ R+ V +SGG DS ++A L +         ++++ + +                   
Sbjct: 144 KENDRIAVCISGGKDSMLMAKLFQELRRHNKFPFELVFLVM-----DPGYNETNRQVIES 198

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDL 129
           +          +N+   V      F   +                 PC  C   ++   L
Sbjct: 199 N-------ARLLNIPITV------FETQIFDAVYDVEK-------SPCYLC-ARMRRGYL 237

Query: 130 LSVTRQLGADVLATGHY 146
            +  R+LG + +A GH+
Sbjct: 238 YNKARELGCNKIALGHH 254


>gi|45359153|ref|NP_988710.1| ExsB family protein [Methanococcus maripaludis S2]
 gi|45048028|emb|CAF31146.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 261

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 23/169 (13%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L S   ++N K  + VVA SGGVDS+             I V   ++     + R     
Sbjct: 52  LKSDITNQNLKKEKAVVAFSGGVDSTTS-----------IIVANNIFEICAVTVRSKYIM 100

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             +       + +++N+SH   D         + P      +G+   PC  C+ TV+ ++
Sbjct: 101 DAKTEQSILELTNSLNISHEFIDVN-------LNPIFEDTKSGKY-HPCGRCHSTVE-AE 151

Query: 129 LLSVTRQLGADVLATGHYIRSRLYV---GDDGKRRRIMCRPMDLERDQS 174
           +L+   + G   +  G  +          D G  R  +   + + +D+S
Sbjct: 152 ILNYAEKNGIKYIIYGDMLSIGHLSIKKVDKGINRLNILSFLSVAKDES 200


>gi|322494670|emb|CBZ29972.1| thiamine biosynthesis-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 795

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 29/116 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+  +SGG+DS V A  +   G  V GV      +  AS  + +          RR+
Sbjct: 223 DQRVLALISGGIDSPVAAYRMMTRGCLVNGVHFLNSTNDTASVVEKN----------RRI 272

Query: 80  CDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           C+ +         +  D        V             P      NRT+ +   +
Sbjct: 273 CERLSTVQGRFDMHYVDISTLQSQIV----------ANVPN----HNRTLIYKWFM 314


>gi|239979142|ref|ZP_04701666.1| NAD(+) synthase (glutamine-hydrolysing) [Streptomyces albus J1074]
 gi|291451019|ref|ZP_06590409.1| NAD(+) synthase [Streptomyces albus J1074]
 gi|291353968|gb|EFE80870.1| NAD(+) synthase [Streptomyces albus J1074]
          Length = 585

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AAL     G + V GV++                +     DA  + 
Sbjct: 329 VLIGLSGGIDSALTAALAVDAIGAEHVYGVSM-----------PSKYSSEHSKDDAAELA 377

Query: 81  DTINVSHYVFDYEERF 96
               + +        F
Sbjct: 378 RRTGLHYRTVSIAPMF 393


>gi|219120587|ref|XP_002181029.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407745|gb|EEC47681.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 188

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 60/207 (28%), Gaps = 64/207 (30%)

Query: 25  VAMSGGVDSS--------------VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           VA SGG+DSS                 A        V+GV               +    
Sbjct: 1   VAFSGGIDSSVVAAAVHAVQTSTETAIA--------VLGV--------------SNAVPE 38

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           + V  ARR+   I +        E   +  I     +  A +T                 
Sbjct: 39  EQVLLARRISSHIGIPLTEVPTTEGSDDIYIANAGQACLACKT----------------- 81

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                     L +     +      DG R+       D  +D +  L     +    +  
Sbjct: 82  ---------HLYSTLSAIAAHAKHSDGGRQLYNGTNSDDLKDPT-RLGLIAAENF-KVLS 130

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDS 217
           PL ++ K  VR +AR MGL   + + S
Sbjct: 131 PLRELTKAKVRVVARHMGLPNWNYAAS 157


>gi|297619959|ref|YP_003708064.1| argininosuccinate synthase [Methanococcus voltae A3]
 gi|297378936|gb|ADI37091.1| argininosuccinate synthase [Methanococcus voltae A3]
          Length = 399

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 33/201 (16%)

Query: 19  KDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ ++ V A SGG+D+S    LL+             Y+    S         +D+ +  
Sbjct: 4   ENKKIAVLAYSGGLDTSCCLKLLEDK-----------YDYSVVSVAVDVGQPAEDLIEPE 52

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQ 135
                  V  H+  D +E F    I     + A  E  PL        +       +   
Sbjct: 53  EKAKKFGVLEHHTIDAKEEFAKDYIFRAIKANALYEGYPLSTALARPLIAVKI-AELAES 111

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L A  ++ G         G+D  R   + R      +    +       L          
Sbjct: 112 LNASAISHG-----CTGKGNDQFRFESIMRAKTPSIE---IVAPIRDLNLTRT------- 156

Query: 196 KKESVRDLAREMGLDIADKSD 216
             E + + ARE G+ +    +
Sbjct: 157 --EEI-EYAREKGIPVPVDLE 174


>gi|21673395|ref|NP_661460.1| NAD synthetase [Chlorobium tepidum TLS]
 gi|25090735|sp|Q8KEX2|NADE_CHLTE RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|21646493|gb|AAM71802.1| NH(3)-dependent NAD+ synthetase [Chlorobium tepidum TLS]
          Length = 277

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 44/190 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+VV  L  R  G + V+ + +                + + +  A  + 
Sbjct: 33  VVLGLSGGIDSAVVCELAVRALGVENVLALMM-----------PYKTSSQESLDHAELMV 81

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + + + +    E     V+  F ++        P       ++  ++++ +R L    
Sbjct: 82  DRLGIRYEIMPVTE-----VVDAFFATR-------PDAS---RLRRGNVMARSRML---C 123

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L         L +G   K   ++              + T    +     P+GD+ K  +
Sbjct: 124 LYDVSARDGCLVLGTSNKTELML-------------GYGTMFGDMASAVNPIGDLYKTQI 170

Query: 201 RDLAREMGLD 210
             LAR +G+ 
Sbjct: 171 FGLARHLGIP 180


>gi|328881984|emb|CCA55223.1| NAD synthetase or Glutamine amidotransferase chain of NAD
           synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 609

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+V +SGG+DS++VAA+     G + V GV++                +     DA  + 
Sbjct: 352 VLVGLSGGIDSALVAAIACDALGAENVYGVSM-----------PSKYSSDHSRGDAAELA 400

Query: 81  DTINVSHYVFDYEERF 96
               + +     E  F
Sbjct: 401 RRTGLHYRTVSIEPMF 416


>gi|169347058|ref|ZP_02866000.1| GMP synthase [Clostridium perfringens C str. JGS1495]
 gi|169296741|gb|EDS78870.1| GMP synthase [Clostridium perfringens C str. JGS1495]
          Length = 509

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   D +++ A+SGGVDSSV A ++ +  G  +  +     +     K +G      
Sbjct: 207 EIKKIVGDKKLICALSGGVDSSVAAVMVHKAVGKQLTCIF---VDHGLLRKDEGDQVEKI 263

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                    +  +++    + ++RF   +                 +     ++      
Sbjct: 264 FK-------EGFDMNLIRVNAQDRFLGKLKGVSDPETKRK------IIGEEFIRV--FEE 308

Query: 132 VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              +LG    L  G        V + G     + +           +    +     L  
Sbjct: 309 EAGKLGDIKFLVQG---TIYPDVVESGTDTSAVIKSHHN-------VGGLPEDMEFSLIE 358

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR +  E+G+ 
Sbjct: 359 PLRELFKDEVRAVGEELGIP 378


>gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like [Moorella thermoacetica ATCC
           39073]
 gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
           ATCC 39073]
          Length = 455

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 77/238 (32%), Gaps = 44/238 (18%)

Query: 22  RVVVAMSGGVDSSVVAAL-----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +VVV +SGG DS   A L     L+ +     G TLQ+              A  D    
Sbjct: 20  KVVVGVSGGPDSL--ALLHSLMTLQEEY----GYTLQV----AHLNHGLRPEAAADAEYV 69

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R +     +   V       +  V+      + + E         R V+++    V   +
Sbjct: 70  RDLATGWGLPVTVA------QRDVLAYRQEHHLSIE------AAAREVRYNFFQEVAAAV 117

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  +A GH    +            + R   L    +       ++    L  PL  + 
Sbjct: 118 GATRIAVGHQAEDQAE-----TVLLNLLRGSGL----TGLKAMLPRR--GRLIRPLLFVT 166

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQI 252
           +  +    R+ GL       ++D       +   +  ++   +A E +  IV   G+ 
Sbjct: 167 RAEIEAYCRDNGLHPRRDFTNED----PAYRRNKIRHQLLPLLAREYNPAIVATLGRT 220


>gi|315425057|dbj|BAJ46730.1| thiamine biosynthesis protein ThiI [Candidatus Caldiarchaeum
           subterraneum]
          Length = 398

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 40/197 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80
           RV+  +SGGVDS+V + LL + G  V  + L  Y  S +A   K      +         
Sbjct: 171 RVLSLISGGVDSAVASLLLMKRGCRVDFLHLHSYRTSDEAVDEKIGELVEKLTE------ 224

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
                    ++ +     A   PF        T L  V   R      LL V  ++    
Sbjct: 225 ---------YNLKSTLYTASFTPFYKHIWDKRTRLEIVLFRRY-----LLRVAEEI---A 267

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           L+ G+     L +GD           +     Q+         Q     F PL  + K  
Sbjct: 268 LSRGYRA---LVLGD----------SLAQVASQT-LPNILAVGQPRIPIFRPLIGLDKSE 313

Query: 200 VRDLAREMG-LDIADKS 215
           + +LA++ G L+   K 
Sbjct: 314 IIELAQKYGVLETVSKP 330


>gi|291166567|gb|EFE28613.1| tRNA(Ile)-lysidine synthase [Filifactor alocis ATCC 35896]
          Length = 466

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 36/220 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKAS 61
           V E  R N+L   K     +V+VA SGG DS V    LL     ++    ++LY      
Sbjct: 7   VLETIRQNNLIQPKE----KVIVAFSGGPDS-VCLLHLLHELKAELD---IKLYAFHLNH 58

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
           + +G             +CD  ++  +V          V         A    +   +  
Sbjct: 59  QIRGLDAHRDAW-YCLSLCDEYDIPFFV------DSTDVPGY------AQNMKMSLEEAA 105

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           R V++  L  +   L AD +A  H +  ++           M R        +       
Sbjct: 106 RDVRYKKLFYLKSILNADKIAVAHNMDDQVE-----TVLMRMMRG-------TGLYGLKG 153

Query: 182 QQQL--CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
            +QL    +  PL  ++K+ + +   + G+     + +Q+
Sbjct: 154 MEQLLSNGIIRPLLSVQKKEIIEELEQNGIHWQVDTTNQE 193


>gi|289209199|ref|YP_003461265.1| NAD+ synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944830|gb|ADC72529.1| NAD+ synthetase [Thioalkalivibrio sp. K90mix]
          Length = 564

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS + AAL     G   V  V +                A   + DA    
Sbjct: 306 VLLGLSGGIDSGLTAALAVDALGPAAVTAVMM-----------PYRYTASMSIEDAEAQA 354

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
             + + ++            I P    +  G +P 
Sbjct: 355 RLLGIEYH---------EIAIEPMVQDFLEGLSPA 380


>gi|222056031|ref|YP_002538393.1| NAD+ synthetase [Geobacter sp. FRC-32]
 gi|221565320|gb|ACM21292.1| NAD+ synthetase [Geobacter sp. FRC-32]
          Length = 332

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 28/209 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ +SGG+DSSV AAL  R  G + V  + +   +S   +K   S        +++ V 
Sbjct: 40  IVIGVSGGIDSSVTAALAVRALGRERVYALEMPERHSADETKTLSSMLIEHLGVESQHV- 98

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC---VDCNRTVKFSDLLSVTRQLG 137
           +   +      + + + +AV       Y  G         V  N       L++ + + G
Sbjct: 99  NITGI-LEAVGFYQLYDDAV-RMVVPEYGRGWKSKIVTSSVFENNGFNLPSLVAQS-ESG 155

Query: 138 ADV-------------LATGHYIRSRLYVGDDGKRRRIMCRPMDLER---DQSYFLFATT 181
             +              AT +  R R  +      R          R   DQ +F+    
Sbjct: 156 CTIKKRLPLTPYLHIVAATNYKQRIRKMIEYYHADRLHYAVAGTPNRLEYDQGFFV-KLG 214

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                    P+  + K  V  LA  +G+ 
Sbjct: 215 DGAAD--IKPIAHLYKSQVYQLAGYLGIP 241


>gi|78224180|ref|YP_385927.1| hypothetical protein Gmet_2987 [Geobacter metallireducens GS-15]
 gi|78195435|gb|ABB33202.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 280

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 67/195 (34%), Gaps = 45/195 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+VA SGGVDS+    LL+   +DV+G      +   A           +  +A  +   
Sbjct: 21  VLVAFSGGVDST---FLLRVA-HDVLG------DRAVALTATSPTYPESEFREAVALALE 70

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V   V +  E      I  F     AG     C  C + + F    +    LG    A
Sbjct: 71  IGVRQVVVESNELE----IPGF-----AGNPRNRCYHCKKEL-FQLAGARAAGLGLSWAA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200
            G  +                        D S F       Q   +R PL    + KE +
Sbjct: 121 DGSNVD-----------------------DLSDFRPGRQAIQELGVRSPLLEAGLGKEDI 157

Query: 201 RDLAREMGLDIADKS 215
           R L+RE+GL   +K 
Sbjct: 158 RQLSRELGLPTWNKQ 172


>gi|313903243|ref|ZP_07836636.1| NH(3)-dependent NAD(+) synthetase [Thermaerobacter subterraneus DSM
           13965]
 gi|313466554|gb|EFR62075.1| NH(3)-dependent NAD(+) synthetase [Thermaerobacter subterraneus DSM
           13965]
          Length = 621

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 25  VAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + +SGG+DS++VA L     G   V GV +                +   + DA  V   
Sbjct: 357 LGLSGGIDSALVACLAADALGPRQVTGVRM-----------PSPFTSAASLDDAEAVARN 405

Query: 83  INVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGA 138
           + +        E F      + P       G+ P    + N    ++ + L+++  + G 
Sbjct: 406 LGIGLETIPIGEIFGAFRQALAPLF-----GDRPFDVAEENLQARIRGTLLMALANKFGG 460

Query: 139 DVLATG 144
            VLATG
Sbjct: 461 LVLATG 466


>gi|266624801|ref|ZP_06117736.1| ExsB family protein [Clostridium hathewayi DSM 13479]
 gi|288863320|gb|EFC95618.1| ExsB family protein [Clostridium hathewayi DSM 13479]
          Length = 243

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 48/246 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V +SGG DS  +   L+  +          + +     +   G      D+   + +
Sbjct: 25  HIAVGISGGKDSLTLLYALQGLKQ------FYPKHFELSAITVDLGF--GDFDLSPVKEL 76

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+  +V + +   E       I              PC  C +  K   L     +LG +
Sbjct: 77  CERFSVPYTIVSTE-------IGKILFETRKES--NPCALCAKLRK-GALNDAAIKLGCN 126

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL----RFPLGDM 195
            +A  H+    +          ++   +   R    F   +    L         P+  +
Sbjct: 127 KIAYAHHREDLIET--------MLLSLIYEGR----FYAFSPSTYLDRTGLTVIRPMIYV 174

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-------L 248
           K+  V     +  L +         C V      + VK++   +  E   V        +
Sbjct: 175 KEADVIGFKNKYDLPVCKNP-----CPVDGHTKREYVKKLTKTLEQENPGVKDRLFHAIV 229

Query: 249 NGQILG 254
           +G I G
Sbjct: 230 DGTIEG 235


>gi|154505074|ref|ZP_02041812.1| hypothetical protein RUMGNA_02584 [Ruminococcus gnavus ATCC 29149]
 gi|153794553|gb|EDN76973.1| hypothetical protein RUMGNA_02584 [Ruminococcus gnavus ATCC 29149]
          Length = 391

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 30/134 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  R+ V +SGG DS ++A L +         ++V  + +                  Q+
Sbjct: 147 EGDRIAVCISGGKDSMLMAKLFQELKKHNKFPFEVEYLVM-----DPGYSELNRKLIEQN 201

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     + +   +  +E    +AV               PC  C   ++   L S 
Sbjct: 202 -------AKMMGIPIKI--FESDIFDAVFD---------VEKSPCYLC-ARMRRGHLYSK 242

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A GH+
Sbjct: 243 AKELGCNKIALGHH 256


>gi|15606536|ref|NP_213916.1| hypothetical protein aq_1333 [Aquifex aeolicus VF5]
 gi|2983761|gb|AAC07321.1| hypothetical protein aq_1333 [Aquifex aeolicus VF5]
          Length = 301

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +V+VA+SGG DS  +  +L++ GY+  G+ +      + S++              +
Sbjct: 47  KKDKVLVAISGGKDSLALWHVLRKLGYEADGLYI-NLGIGEYSEKSK--------EKVLK 97

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             + IN    + D +E                  +   C  C   VK  +   V ++ G 
Sbjct: 98  FAEKINGKAIIVDLKEELAG------IPELVKITSREACSVCG-LVKRYNFNKVAKEHGY 150

Query: 139 DVLATGHYI 147
           +V+ATGH +
Sbjct: 151 NVIATGHNL 159


>gi|302671171|ref|YP_003831131.1| argininosuccinate synthase ArgG [Butyrivibrio proteoclasticus B316]
 gi|302395644|gb|ADL34549.1| argininosuccinate synthase ArgG [Butyrivibrio proteoclasticus B316]
          Length = 407

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYD 75
           +V++A SGG+D    A +  LK +  Y+VI   +      +     +R  SC A      
Sbjct: 5   KVILAYSGGLD--TTAIIPWLKENFDYEVICCCIDCGQEEELDGLEERAISCGAS----- 57

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
                       Y+ D  + F +  IVP   ++A  E          R +    L+ V R
Sbjct: 58  ----------KLYILDVVDEFCDEYIVPCVQAHAVYENKYLLGTSMARPLIAKKLVEVAR 107

Query: 135 QLGADVLATG 144
           + GA  +  G
Sbjct: 108 KEGAVAICHG 117


>gi|240115610|ref|ZP_04729672.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
 gi|260440579|ref|ZP_05794395.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
          Length = 411

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 43/225 (19%)

Query: 26  AMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           A+SGG+DS V+  LL    KR G+    + +            G      D  D  R  C
Sbjct: 2   ALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPRADDWADFCRNYC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V           +  V        AA              +++         G DV
Sbjct: 52  DMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK----GFDV 91

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           LA  H+        DD     ++             + A        + + PL    ++ 
Sbjct: 92  LALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGIIWRPLLPFSRQD 144

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 145 IWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 189


>gi|237653339|ref|YP_002889653.1| argininosuccinate synthase [Thauera sp. MZ1T]
 gi|237624586|gb|ACR01276.1| argininosuccinate synthase [Thauera sp. MZ1T]
          Length = 409

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPARAKAL 53

Query: 82  TINV---SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
              +   + ++ D  E F    + P           Y  G +    +   R +       
Sbjct: 54  QFGIQPENIFIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------E 107

Query: 132 VTRQLGADVLATG 144
           + R  GAD ++ G
Sbjct: 108 IARATGADAVSHG 120


>gi|213962597|ref|ZP_03390859.1| GMP synthase [Capnocytophaga sputigena Capno]
 gi|213954923|gb|EEB66243.1| GMP synthase [Capnocytophaga sputigena Capno]
          Length = 515

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           S    +    L     + +V++ +SGGVDS+V A LL +  G  +  + 
Sbjct: 203 SNFVEMTVAQLKTQIGNEKVILGLSGGVDSTVAAVLLNKAIGKQLHCIF 251


>gi|168067145|ref|XP_001785485.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662892|gb|EDQ49692.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 290

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 78/245 (31%), Gaps = 55/245 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-----RKGSCCAGQDVYDARR 78
           VV MSGG++S+V+                  + S  A         G   A  +   + +
Sbjct: 7   VVLMSGGIESAVLLY---------------NWRSSSALLHPLYINYGQRGAAMEERASDK 51

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+ + +     D       AV   F       ++ +P    N  V      S   Q+G+
Sbjct: 52  ICNNLGLELSRIDMS-----AVGNKFRELQHGAKSFVPLPHRN-LVILGLAASYASQVGS 105

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A G      L   D G         MD     S+   A + +    L  PL    K 
Sbjct: 106 SKVALG------LNKDDLGSYSSASQNFMD-----SFRSTAASLEPPVTLIAPLSHFTKA 154

Query: 199 SVRDLAREMGLDIAD----------------KSDSQDICF--VQQGKYFDVVKRINAGIA 240
            V  L + +G+  AD                +  S+ + F    + +     +R   G  
Sbjct: 155 EVIRLGKRLGVPFADTYSCMVGRPVHCGRCHQCRSRQLAFASASEQEPAGFYERYRQGNL 214

Query: 241 LEGDI 245
            EG I
Sbjct: 215 EEGYI 219


>gi|71893821|ref|YP_279267.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae J]
 gi|71851948|gb|AAZ44556.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae J]
          Length = 246

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 44/196 (22%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  +   V+  +SGGVDS++VA L  +   D   G+ + + +               D+ 
Sbjct: 23  KKAQKKGVIFGLSGGVDSALVAVLANKAFPDSHLGLIMPIRD------------MITDMV 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   +     + +   + +  F N             +  L   +    ++ + L +  +
Sbjct: 71  DIDLLVKKFGIKNKEINLKPAFEN------LKKCFNLKNKLANSNIQPRLRMTSLYAFAQ 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +   D L  G    S +Y+G   K         D   D                  P+ +
Sbjct: 125 E--FDYLVLGTDNFSEMYLGYFTKY-------GDGGVD----------------LLPIVN 159

Query: 195 MKKESVRDLAREMGLD 210
           + K  V  +A E+G+ 
Sbjct: 160 LTKVQVWKMAAEIGIP 175


>gi|54020213|ref|YP_115981.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae 232]
 gi|72080805|ref|YP_287863.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae 7448]
 gi|6651174|gb|AAF22217.1|AF140575_2 NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae]
 gi|53987386|gb|AAV27587.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae 232]
 gi|71913929|gb|AAZ53840.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae 7448]
 gi|312601424|gb|ADQ90679.1| NH(3)-dependent NAD+ synthetase [Mycoplasma hyopneumoniae 168]
          Length = 246

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 44/196 (22%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  +   V+  +SGGVDS++VA L  +   D   G+ + + +               D+ 
Sbjct: 23  KKAQKKGVIFGLSGGVDSALVAVLANKAFPDSHLGLIMPIRD------------MITDMV 70

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           D   +     + +   + +  F N             +  L   +    ++ + L +  +
Sbjct: 71  DIDLLVKKFGIKNKEINLKPAFEN------LKKCFNLKNKLANSNIQPRLRMTSLYAFAQ 124

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           +   D L  G    S +Y+G   K         D   D                  P+ +
Sbjct: 125 E--FDYLVLGTDNFSEMYLGYFTKY-------GDGGVD----------------LLPIVN 159

Query: 195 MKKESVRDLAREMGLD 210
           + K  V  +A E+G+ 
Sbjct: 160 LTKVQVWKMAAEIGIP 175


>gi|150016195|ref|YP_001308449.1| thiamine biosynthesis protein ThiI [Clostridium beijerinckii NCIMB
           8052]
 gi|149902660|gb|ABR33493.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           beijerinckii NCIMB 8052]
          Length = 385

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 37/187 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DS V   ++ + G +V  V    Y+S   +  +    A   V D  ++    
Sbjct: 179 MLMLSGGIDSPVAGYMMAKRGVEVSCVY---YHSHPYTSER----AKDKVKDLAKILAQY 231

Query: 84  --NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              ++ Y+  + +  +  +I                    R         +  + G + +
Sbjct: 232 TEKINLYIVPFTDI-QMEIINKCRED--------ELTIIMRRFMMRIACRLADKYGINSV 282

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           +TG  I        DG      C      R                   PL  M K  + 
Sbjct: 283 STGESIGQVASQTMDGLIVSDNCADRPAFR-------------------PLIAMDKTDIM 323

Query: 202 DLAREMG 208
           ++AR++G
Sbjct: 324 EIARKIG 330


>gi|329910647|ref|ZP_08275342.1| Argininosuccinate synthase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546132|gb|EGF31187.1| Argininosuccinate synthase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L  + Y    VT                  G+++  AR+  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLPDN-YQCEIVTF-----------TADLGQGEELEPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     ++ D  E F    + P           Y  G +    +   R      L+
Sbjct: 53  LKFGIKPENIHIDDVREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LI 106

Query: 131 SVTRQLGADVLATG 144
            + R+ GAD ++ G
Sbjct: 107 EIARESGADTISHG 120


>gi|118588086|ref|ZP_01545496.1| NAD synthetase [Stappia aggregata IAM 12614]
 gi|118439708|gb|EAV46339.1| NAD synthetase [Stappia aggregata IAM 12614]
          Length = 555

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++ AA+     G D +   +                + + + DA     
Sbjct: 290 VVLGLSGGIDSAICAAMAVDALGADKVHAIM----------LPYRYTSEESITDAAACAK 339

Query: 82  TINVSHYVFDYEE 94
            + + +      E
Sbjct: 340 ALGIRYDTVPISE 352


>gi|283852152|ref|ZP_06369425.1| PP-loop domain protein [Desulfovibrio sp. FW1012B]
 gi|283572378|gb|EFC20365.1| PP-loop domain protein [Desulfovibrio sp. FW1012B]
          Length = 302

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA+SGG DS  +  +L   G+DV G+ + L            C   +        C 
Sbjct: 49  KVLVAVSGGKDSLALMRVLSDLGHDVDGLHVHL---GIPDSSDPVCERTESY------CR 99

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 +V    E      +               C  C + +K         + G   L
Sbjct: 100 DNGFRLHVLRTAE------VGLAIPKVKDAVRRPICAVCGK-IKRHYFNRFAYENGYAAL 152

Query: 142 ATGHYI 147
           ATGH +
Sbjct: 153 ATGHNL 158


>gi|20094215|ref|NP_614062.1| thiamine biosynthesis ATP pyrophosphatase [Methanopyrus kandleri
           AV19]
 gi|19887243|gb|AAM01992.1| Thiamine biosynthesis ATP pyrophosphatase [Methanopyrus kandleri
           AV19]
          Length = 348

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 42/210 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             R +  +SGG DS V   ++ R G +  G+   +  S   + R+      +   D    
Sbjct: 158 QGRALCLLSGGFDSPVATWMVMRRGLECKGLHFLVTESELEAARENERVLRRWCPD---- 213

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGA 138
                    V +    F        A     G      CV C   +          +LG 
Sbjct: 214 -----FDLLVDESHREFLE-----TAEERLTGRLKRYLCVVCKMRMLERA-SQWADRLGC 262

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKK 197
           D + TG  +                         Q+ +     + Q+  +   PL  + K
Sbjct: 263 DCIVTGDSLGQVAS--------------------QTVWNLKLEESQVNGIVLRPLVGLNK 302

Query: 198 ESVRDLAREMGLDIADKSDSQDIC-FVQQG 226
             +    R +G+   D       C FV + 
Sbjct: 303 PEIVRYGRRIGVPERDPGR----CPFVPER 328


>gi|262306113|gb|ACY45649.1| gln amidotransferase [Streptocephalus seali]
          Length = 197

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
          ++ K   + +V+V +SGGVDS+V AALL R 
Sbjct: 36 EIKKLVGNQKVLVLVSGGVDSTVCAALLTRA 66


>gi|78186447|ref|YP_374490.1| NAD synthetase [Chlorobium luteolum DSM 273]
 gi|123583355|sp|Q3B5D4|NADE_PELLD RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|78166349|gb|ABB23447.1| NH(3)-dependent NAD(+) synthetase [Chlorobium luteolum DSM 273]
          Length = 277

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 44/190 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+VVA L  R  G + V+ + +      K S R+        +  A  + 
Sbjct: 33  VVLGLSGGIDSAVVAELAVRALGPEHVLALKM----PYKESSRES-------LEHADLMI 81

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             +N+               + P A  +         V     ++  ++++ TR +    
Sbjct: 82  RRLNIKAE---------ERPVTPMADDFFR------DVPEGERLRRGNIMARTRMV---- 122

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L      R    V     +  ++              + T    +     PLGD+ K  V
Sbjct: 123 LLYDVSARDGSLVAGTSNKTELLL------------GYGTMFGDMASAVNPLGDLYKTQV 170

Query: 201 RDLAREMGLD 210
           R LAR +G+ 
Sbjct: 171 RGLARHLGIP 180


>gi|89893531|ref|YP_517018.1| argininosuccinate synthase [Desulfitobacterium hafniense Y51]
 gi|119361273|sp|Q24ZG8|ASSY_DESHY RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|89332979|dbj|BAE82574.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 409

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   LK + GY+VI           A   +G           +  
Sbjct: 10  KKVVLAYSGGLDTSIIIPWLKENYGYEVIA--------MAADLGQGEELEPLHEKAIKSG 61

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
              +    Y+ D +E F    I P           Y  G +    +   R      L+ +
Sbjct: 62  ASKL----YIEDLQEEFVTDFIYPTLKAGAVYEGKYLLGTSFARPLIAQR------LVEI 111

Query: 133 TRQLGADVLATG 144
             + GA  +A G
Sbjct: 112 AAKEGAVAIAHG 123


>gi|219666859|ref|YP_002457294.1| argininosuccinate synthase [Desulfitobacterium hafniense DCB-2]
 gi|259585354|sp|B8FWX2|ASSY_DESHD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|219537119|gb|ACL18858.1| Argininosuccinate synthase [Desulfitobacterium hafniense DCB-2]
          Length = 401

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   LK + GY+VI           A   +G           +  
Sbjct: 2   KKVVLAYSGGLDTSIIIPWLKENYGYEVIA--------MAADLGQGEELEPLHEKAIKSG 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
              +    Y+ D +E F    I P           Y  G +    +   R      L+ +
Sbjct: 54  ASKL----YIEDLQEEFVTDFIYPTLKAGAVYEGKYLLGTSFARPLIAQR------LVEI 103

Query: 133 TRQLGADVLATG 144
             + GA  +A G
Sbjct: 104 AAKEGAVAIAHG 115


>gi|317055960|ref|YP_004104427.1| PP-loop domain-containing protein [Ruminococcus albus 7]
 gi|315448229|gb|ADU21793.1| PP-loop domain protein [Ruminococcus albus 7]
          Length = 290

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 30/134 (22%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS   +V    L+R     +DV  + +   +   A   +        
Sbjct: 35  EGDKIAVCISGGKDSMMMAVCMKRLQRYSKVPFDVEYIVM---DPGYAPANRQKIIDN-- 89

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     + +   +      F   +     +         PC  C   ++   L   
Sbjct: 90  -------AAKLEIPIKI------FETKIFDSVVNVKQ-----NPCYLC-ARMRRGYLYKN 130

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A GH+
Sbjct: 131 AQELGCNKIALGHH 144


>gi|261884820|ref|ZP_06008859.1| GMP synthase [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 273

 Score = 46.7 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V+ A SGGVDSSVVAALL   
Sbjct: 214 NDKVLCAASGGVDSSVVAALLAHA 237


>gi|220930764|ref|YP_002507673.1| PP-loop domain protein [Clostridium cellulolyticum H10]
 gi|220001092|gb|ACL77693.1| PP-loop domain protein [Clostridium cellulolyticum H10]
          Length = 239

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 22/137 (16%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +      R+ V +SGG DS +      R         LQ +  +K      S   G  
Sbjct: 17  DYNMIEDGDRIAVGVSGGKDS-MTLLTALRQ--------LQNFYPKKFELEAISLTMGIG 67

Query: 73  VYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             D   V   C  I V++ +          +I          +   PC  C   ++   L
Sbjct: 68  NADFTPVVEYCKKIGVNYTI-------EETLIGKIIFEVRNEK--NPCSMC-ANLRRGAL 117

Query: 130 LSVTRQLGADVLATGHY 146
            +  + LG + +A GH+
Sbjct: 118 HNKAKTLGCNKVALGHH 134


>gi|70729836|ref|YP_259575.1| NAD synthetase [Pseudomonas fluorescens Pf-5]
 gi|68344135|gb|AAY91741.1| NAD+ synthetase [Pseudomonas fluorescens Pf-5]
          Length = 279

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 44/196 (22%)

Query: 24  VVAMSGGVDSSVVAALLKR--------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ +SGGVDS + A  L +         G +   + ++L   ++A +     C      D
Sbjct: 48  VLGISGGVDS-LTAGRLCQLAVEQMRAAGQEARFIAMRLPYRQQADESDAQACLDFIGPD 106

Query: 76  ARRVCDTINVSHYVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           A   C+       + D  E   N V I         G  P P +     VK  ++ +  R
Sbjct: 107 AVSTCN-------IADSVEGLMNQVRID--------GLQPSPALT--DFVK-GNVKARAR 148

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            L    +A      + L VG D                ++   F T          PL  
Sbjct: 149 MLAQYAVAN---FSNGLVVGTDHG-------------AEALMGFFTKYGDGACDLAPLSG 192

Query: 195 MKKESVRDLAREMGLD 210
           + K  VR LA  +G  
Sbjct: 193 LTKTQVRLLAEALGAP 208


>gi|44887702|sp|Q7UFW4|ASSY_RHOBA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|327540936|gb|EGF27494.1| argininosuccinate synthase [Rhodopirellula baltica WH47]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQD--VYDAR- 77
           V+A SGG+D+SV+   L+  GY+V  V + L      R A   K   C  +   + D R 
Sbjct: 5   VLAYSGGLDTSVILGWLQDQGYEVHCVYVDLGQPCEDRDAIMEKARTCGAKSSRLVDVRE 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C        V  ++ ++           Y  G          R +     L V R++G
Sbjct: 65  ELCRDFAFP--VLAWQAKYEQI--------YLLG------TSIARPLISKVCLEVAREVG 108

Query: 138 ADVLATG 144
           A   A G
Sbjct: 109 ATAYAHG 115


>gi|170079392|ref|YP_001736030.1| argininosuccinate synthase [Synechococcus sp. PCC 7002]
 gi|229889898|sp|B1XN65|ASSY_SYNP2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|169887061|gb|ACB00775.1| argininosuccinate synthase [Synechococcus sp. PCC 7002]
          Length = 399

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGGVD+SV    L+   G  +VI  TL    +      +      + +     V
Sbjct: 6   KVVLAYSGGVDTSVCIPYLMHEWGVKEVI--TLA---ADLGQGEELGPIKQKALNSGAVV 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D  E F      P   + A  E   P      R +    L+    + GA
Sbjct: 61  S-------LVEDGREEFITDYAFPAIKANALYENRYPLATALARPLIAKMLVRAAEKYGA 113

Query: 139 DVLATGHYIRSRLYVGDD 156
           D +A G   +    V  D
Sbjct: 114 DAVAHGCTAKGNDQVRFD 131


>gi|157165487|ref|YP_001466356.1| PP-loop family protein [Campylobacter concisus 13826]
 gi|112800124|gb|EAT97468.1| PP-loop family protein [Campylobacter concisus 13826]
          Length = 252

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           ++++ +SGG DS  +A +LK          +Q     K   +    S   G+D     + 
Sbjct: 27  KILLGLSGGKDSLALAHVLK---------HIQNVTPEKFEFKAVTLSYGMGEDYAYLTKH 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+   + H V D        +            +   C   +R ++   L +     G +
Sbjct: 78  CNEHGIEHEVIDSS------IFEISKEKIRKNSSF--CSFFSR-MRRGYLYTYALNHGFN 128

Query: 140 VLATGHYI 147
            LA  H++
Sbjct: 129 KLAIAHHL 136


>gi|91200744|emb|CAJ73796.1| Strongly similar to argininosuccinate synthetase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 420

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 40/207 (19%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             +  +VV+A SGG+D+SV    +    Y  DVI VT+ L              A +D+ 
Sbjct: 2   TKQRKKVVLAYSGGLDTSVAIKWIPEK-YDMDVITVTVDL-------------GAVKDLE 47

Query: 75  DARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132
             R+    I      V D ++ F    ++P   + A  E   P      R +    L   
Sbjct: 48  SIRQKALKIGAKKAIVVDAKDTFVKYFVMPALQAGALYEGVYPLATALGRPLIAKLLADA 107

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
                AD +A G                    +  D  R          + Q+     PL
Sbjct: 108 AEDEKADAVAHG-----------------CTGKGNDQVRLDVSLQVLNPRLQI---IAPL 147

Query: 193 --GDMKKESVRDLAREMGLDIADKSDS 217
               M ++     A E G+ +  K +S
Sbjct: 148 REWKMSRDEEIQYAEEHGIHVEAKVNS 174


>gi|85709640|ref|ZP_01040705.1| ExsB [Erythrobacter sp. NAP1]
 gi|85688350|gb|EAQ28354.1| ExsB [Erythrobacter sp. NAP1]
          Length = 232

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 11/65 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV +SGG+DS V AA    +G+DV  +T+   +  +  +R+        +  AR + +
Sbjct: 12 KAVVLLSGGLDSMVSAATALENGFDVHALTI---DYGQRHRRE--------LAAARSIAE 60

Query: 82 TINVS 86
           +++S
Sbjct: 61 KLDLS 65


>gi|46110160|ref|XP_382138.1| hypothetical protein FG01962.1 [Gibberella zeae PH-1]
          Length = 394

 Score = 46.7 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-C 80
           RV +A SGG+D+S +   L   GY V+                  C   +D  DA +V  
Sbjct: 5   RVCLAYSGGLDTSTILRWLVLQGYQVVCF-------------LADCGQEEDF-DAVKVKA 50

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
           + +      + D ++   + ++ P     A  E          R V    ++ V ++   
Sbjct: 51  EKLGAERMIILDVQQELIDELVWPAVQCNAIYEDRYLLGTSLARPVIARAMVKVAKEHNC 110

Query: 139 DVLATG 144
            +L+ G
Sbjct: 111 TILSHG 116


>gi|305432659|ref|ZP_07401820.1| PP-loop family protein [Campylobacter coli JV20]
 gi|304444370|gb|EFM37022.1| PP-loop family protein [Campylobacter coli JV20]
          Length = 253

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV++ +SGG DS  +A LLKR   +      L       A+   G    G+D       C
Sbjct: 27  RVLLGLSGGKDSLALAHLLKRMQAHAPFKFEL-----EAATLSYGM---GEDYSGLHAHC 78

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +   + H V D      + +      +     +   C   +R ++   L +   + G + 
Sbjct: 79  EEHGIKHSVID------SNIYEVSGDTIRQNSSF--CSYFSR-MRRGALYTYALEKGFNK 129

Query: 141 LATGHYI 147
           LA  H++
Sbjct: 130 LAIAHHL 136


>gi|284161310|ref|YP_003399933.1| thiamine biosynthesis/tRNA modification protein ThiI [Archaeoglobus
           profundus DSM 5631]
 gi|284011307|gb|ADB57260.1| thiamine biosynthesis/tRNA modification protein ThiI [Archaeoglobus
           profundus DSM 5631]
          Length = 359

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++V   SGG+DS V   L+ + G +V+ +    ++ R  +         + +    +V
Sbjct: 165 EGKLVSLFSGGIDSPVATWLMMKRGCEVVPIY---FDIRPFTSE-------RAIERVEKV 214

Query: 80  CDTINVSHYVFDY------EERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSV 132
              +    Y  D+         F   V            T   C+ C R + K ++   V
Sbjct: 215 AKVL--KEYDPDFDVIVKEHGNFLMKVKDILKEKRLESYT---CIFCKRRMLKVAE--EV 267

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + +GA  + TG  +        D                    L   +Q     +  PL
Sbjct: 268 AKDVGAKGIVTGDSLGQVASQTLDN-------------------LLVISQACSIPIYRPL 308

Query: 193 GDMKKESVRDLAREMG 208
               K  + ++AR++G
Sbjct: 309 IGFDKIEIEEIARKIG 324


>gi|325958096|ref|YP_004289562.1| hypothetical protein Metbo_0338 [Methanobacterium sp. AL-21]
 gi|325329528|gb|ADZ08590.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21]
          Length = 283

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 20/129 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           VVVA+SGG DS +   +L    G   +D++ V         +     +    + V  AR 
Sbjct: 32  VVVALSGGKDSVLTLHILADLMGELEFDLVAV---------SIDEGVAGYRSEGVEAARL 82

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+++ +      +++ F    +      Y +      C+ C    +   L  ++ QLGA
Sbjct: 83  NCESLGIKLVEGSFKDEFGFK-LDDLHGMYQS-----SCIPCGVFRR-QLLNKISHQLGA 135

Query: 139 DVLATGHYI 147
           D LATGH +
Sbjct: 136 DKLATGHNL 144


>gi|302787388|ref|XP_002975464.1| hypothetical protein SELMODRAFT_103224 [Selaginella moellendorffii]
 gi|300157038|gb|EFJ23665.1| hypothetical protein SELMODRAFT_103224 [Selaginella moellendorffii]
          Length = 429

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV- 79
           +VV+A SGG+D+SV+   L+ + G +V+  T        A   +G          A+   
Sbjct: 30  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFT--------ADVGQGLGELEGLEAKAKASG 81

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLS 131
              + +     D +E F    I P           Y  G +   P V     V    ++ 
Sbjct: 82  ASQLIIK----DLKEEFVKDFIFPCLRAGAVYERKYLLGTSMARPLVL----VFVQAMVD 133

Query: 132 VTRQLGADVLATG 144
             +++GAD ++ G
Sbjct: 134 AAKEVGADAVSHG 146


>gi|224539103|ref|ZP_03679642.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519267|gb|EEF88372.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 436

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 22/129 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ +++V +SGG DS V    LL   GY         +     S R        D    R
Sbjct: 18  REDKILVTLSGGADS-VALLRLLLAMGYTCEAAHCNFHLRGDESVR--------DEMFVR 68

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C  + V  +V              F ++  A +  +      R ++++    +  Q G
Sbjct: 69  ELCLQLEVPLHV------------QHFQTTEEAEKRHISIEMAARELRYAWFEQLRLQQG 116

Query: 138 ADVLATGHY 146
           A+V+A  H+
Sbjct: 117 ANVIAVAHH 125


>gi|166362943|ref|YP_001655216.1| hypothetical protein MAE_02020 [Microcystis aeruginosa NIES-843]
 gi|166085316|dbj|BAG00024.1| hypothetical protein MAE_02020 [Microcystis aeruginosa NIES-843]
          Length = 269

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 45/196 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + ++A SGGVDS++VA +     YD++G      +   A          +++ +A    D
Sbjct: 21  KALIAYSGGVDSTLVAKVA----YDLLG------SQALAITAVSPSLLPEELEEAIAQAD 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + + EE                  T  P   C    K S+L    + +    L
Sbjct: 71  YIGIRHELVETEE------------MNNPNYTSNPVNRC-YFCK-SELHDTLKPI---AL 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
           A G+         DD +  R                      +    R PL +  + K  
Sbjct: 114 ARGYSYVIDGVNADDLRDYRP----------------GIQAARERGARSPLAEIGITKSE 157

Query: 200 VRDLAREMGLDIADKS 215
           VR L+R + L   DK 
Sbjct: 158 VRQLSRYLNLPWWDKP 173


>gi|150402761|ref|YP_001330055.1| ExsB family protein [Methanococcus maripaludis C7]
 gi|150033791|gb|ABR65904.1| ExsB family protein [Methanococcus maripaludis C7]
          Length = 261

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 25/170 (14%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           L S   D N +  + VVA SGGVDS+             I +  Q++     + R     
Sbjct: 52  LTSHKTDPNLEKEKAVVAFSGGVDSTTS-----------IIIANQIFEICAVTVRSKYIM 100

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFS 127
             +   +  ++   ++VSH   D      +++     S  Y       PC  C+ TV+ S
Sbjct: 101 DAETEKNVSKLASVLDVSHEFIDVN---LDSIFEDTKSGKYH------PCGRCHSTVE-S 150

Query: 128 DLLSVTRQLGADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQS 174
           ++L+   +     +  G  +      +   D+   R  +   + L +D+S
Sbjct: 151 EILNYAEKNDISYIIYGDMLSIGYLSIKKLDNKIIRLNILSFLSLAKDES 200


>gi|86140637|ref|ZP_01059196.1| NH(3)-dependent NAD synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85832579|gb|EAQ51028.1| NH(3)-dependent NAD synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 264

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 36/190 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+  ++L  + G  V+ V + ++       R     A       +R  +  
Sbjct: 27  VVGISGGIDSATTSSLCAKTGLRVLCVEMPIHQPESHVTRAQEHIAQLK----KRFANVS 82

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNR--TVKFSDLLSVTRQLGADV 140
           +V     D  + F          +      P L     N    ++ S L           
Sbjct: 83  DVR---VDLTQTFET--FKTALPAAETETNPGLELSLANTRARLRMSTLYYFAG------ 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
              G+ +       +D           D   D                  P+ D+ K  V
Sbjct: 132 -LHGYLVAGTGNKVEDFGVGFYTKYG-DGGVD----------------LSPIADLMKSEV 173

Query: 201 RDLAREMGLD 210
             LA+E+G+ 
Sbjct: 174 YALAKELGVP 183


>gi|23006868|ref|ZP_00048990.1| COG0137: Argininosuccinate synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 142

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+ 
Sbjct: 11  KKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELEPARKK 57

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
            + + +     ++ D  E F    + P   +       Y  G +    +   + +     
Sbjct: 58  AELLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGVYLLGTSIARPLIAKKQI----- 112

Query: 130 LSVTRQLGADVLATG 144
             +  +LGAD +  G
Sbjct: 113 -EIAERLGADAVCHG 126


>gi|304406346|ref|ZP_07388003.1| GMP synthase, large subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344930|gb|EFM10767.1| GMP synthase, large subunit [Paenibacillus curdlanolyticus YK9]
          Length = 512

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 70/204 (34%), Gaps = 38/204 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+ +   D  V+ A+SGGVDSSVVA L+ +     IG  L          RKG       
Sbjct: 210 DIREQVGDKNVLCALSGGVDSSVVAMLIHKA----IGDQLTCMFIDHGMLRKGE------ 259

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLL- 130
              A  V +T         +  +F   VI   AS    G+   +   +  R +  ++ + 
Sbjct: 260 ---AESVMET---------FVGKFDMKVIKIDASERFLGKLKGVSDPEQKRKIIGNEFIY 307

Query: 131 ----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  +      LA G        + + G       +           +    +    
Sbjct: 308 VFDEESAKLGDFAFLAQG---TLYTDIVESGTATAQTIKSHHN-------VGGLPEDMKF 357

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  PL  + K+ VR +  E GL 
Sbjct: 358 ELVEPLKALFKDEVRKVGSECGLP 381


>gi|229138126|ref|ZP_04266724.1| hypothetical protein bcere0013_12500 [Bacillus cereus BDRD-ST26]
 gi|229195636|ref|ZP_04322402.1| hypothetical protein bcere0001_12030 [Bacillus cereus m1293]
 gi|228587885|gb|EEK45937.1| hypothetical protein bcere0001_12030 [Bacillus cereus m1293]
 gi|228645471|gb|EEL01705.1| hypothetical protein bcere0013_12500 [Bacillus cereus BDRD-ST26]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAMEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AAEIAKELGIKHTVLDMS 68


>gi|146097919|ref|XP_001468259.1| thiamine biosynthesis-like protein [Leishmania infantum]
 gi|134072626|emb|CAM71341.1| thiamine biosynthesis-like protein [Leishmania infantum JPCM5]
 gi|322502238|emb|CBZ37321.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 795

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 29/116 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV+  +SGG+DS V A  +   G  V GV      +  AS  + +          RR+
Sbjct: 223 DQRVLALISGGIDSPVAAYRMMTRGCLVNGVHFLNSTNDTASVMEKN----------RRI 272

Query: 80  CDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           C+ +      +  +  D        V             P      NRT+ +   +
Sbjct: 273 CERLSSVQGRLDMHYVDISTLQSQIV----------ANVPN----HNRTLIYKWFM 314


>gi|262306059|gb|ACY45622.1| gln amidotransferase [Metajapyx subterraneus]
          Length = 197

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AALL +   +   I V +     RK   +K            +
Sbjct: 43  DSKVLLLVSGGVDSTVCAALLHKALREDQFIAVHIDNGFMRKNESQK-----------VQ 91

Query: 78  RVCDTINVSHYVFDYEERFRN 98
           +    + +   V +   +F N
Sbjct: 92  QSLSKLGLRLRVVNAIHQFYN 112


>gi|168334381|ref|ZP_02692565.1| Argininosuccinate synthase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 403

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ +  YDVI V + +   ++           +D   A  V 
Sbjct: 4   KVVLAFSGGLDTSVIVPWLRENYDYDVIAVCINVGQDKELX-------GLEDRAKAMGVA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASS--------YAAGETPLPCVDCNRTVKFSDLLSV 132
                  Y+ D +E F    I P   S        Y       P +          L+ +
Sbjct: 57  K-----LYIEDVKEEFAKDYIFPMLKSGAIYESRYYLGTSIARPLIA-------KVLVDI 104

Query: 133 TRQLGADVLATG 144
             +  A  +  G
Sbjct: 105 AIKENAVAICHG 116


>gi|167629525|ref|YP_001680024.1| argininosuccinate synthase [Heliobacterium modesticaldum Ice1]
 gi|167592265|gb|ABZ84013.1| argininosuccinate synthase [Heliobacterium modesticaldum Ice1]
          Length = 403

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S++   LK + GY+VI           A   +G   A  +    +  
Sbjct: 3   KKIVLAYSGGLDTSIIIPWLKENYGYEVIA--------MAADLGQGEELAPLNEKAIKSG 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
              +    Y+ D +E F    I P           Y  G +    +   R      L+ +
Sbjct: 55  ATKL----YIEDVKEEFVTDFIWPTLKAGAVYEGKYLLGTSFARPLIAKR------LVEI 104

Query: 133 TRQLGADVLATG 144
            R  GA+ +A G
Sbjct: 105 ARAEGAEAIAHG 116


>gi|163816748|ref|ZP_02208111.1| hypothetical protein COPEUT_02938 [Coprococcus eutactus ATCC 27759]
 gi|158448005|gb|EDP25000.1| hypothetical protein COPEUT_02938 [Coprococcus eutactus ATCC 27759]
          Length = 395

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K M     +SGG+DS V A ++ + G  V  V         A          +
Sbjct: 174 LPVGTNGKGM---ALLSGGIDSPVAAYMIAKRGVVVEAVYFH------APPFTSERAKQK 224

Query: 72  DVYDARRVCDTIN-VSHYVFDYEE 94
            +  A  V D    +  +V ++ +
Sbjct: 225 VIDLACLVADYAGAIKLHVVNFAD 248


>gi|163851716|ref|YP_001639759.1| argininosuccinate synthase [Methylobacterium extorquens PA1]
 gi|254561488|ref|YP_003068583.1| argininosuccinate synthase [Methylobacterium extorquens DM4]
 gi|163663321|gb|ABY30688.1| Argininosuccinate synthase [Methylobacterium extorquens PA1]
 gi|254268766|emb|CAX24727.1| argininosuccinate synthase (citrulline-aspartate ligase)
           [Methylobacterium extorquens DM4]
          Length = 413

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 30/140 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            N    +VV+A SGG+D+S++   L+   G +V+  T                  G+++ 
Sbjct: 6   PNKSVKKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELE 52

Query: 75  DARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTV 124
            ARR  + + +     ++ D  E F    + P   +       Y  G +    +   + +
Sbjct: 53  PARRKAELLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGIYLLGTSIARPLIAKKQI 112

Query: 125 KFSDLLSVTRQLGADVLATG 144
                  +  ++GAD +  G
Sbjct: 113 ------EIAERVGADAVCHG 126


>gi|52079921|ref|YP_078712.1| queuosine (Q) synthesis protein QueC [Bacillus licheniformis ATCC
          14580]
 gi|52785292|ref|YP_091121.1| YkvJ [Bacillus licheniformis ATCC 14580]
 gi|319646262|ref|ZP_08000492.1| queuosine biosynthesis protein queC [Bacillus sp. BT1B_CT2]
 gi|81385781|sp|Q65KI6|QUEC_BACLD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|52003132|gb|AAU23074.1| Queuosine (Q) synthesis protein QueC [Bacillus licheniformis ATCC
          14580]
 gi|52347794|gb|AAU40428.1| YkvJ [Bacillus licheniformis ATCC 14580]
 gi|317392012|gb|EFV72809.1| queuosine biosynthesis protein queC [Bacillus sp. BT1B_CT2]
          Length = 219

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + +V  SGG DS+       R   +V  VT Q            +    Q++  A++
Sbjct: 2  KQEKAIVVFSGGQDSTTCLLWALRQFQEVEAVTFQY-----------NQRHKQEIEVAKK 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + V H++ D E
Sbjct: 51 IAAKLGVKHHLLDME 65


>gi|171692935|ref|XP_001911392.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946416|emb|CAP73217.1| unnamed protein product [Podospora anserina S mat+]
          Length = 518

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 69/217 (31%), Gaps = 68/217 (31%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVI---GVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+ A+SGGVDS+V A L+    G   + V+   GV ++L            C   ++  +
Sbjct: 210 VIGAVSGGVDSTVAARLMTEAIGDRFHAVLVDNGV-MRL----------NECQQVKETLE 258

Query: 76  ARRVCDTINVSHYVFDYEERF------------RNAVI-VPFAS---------SYAAGET 113
                  + ++  V D  + F            +  VI   F             AA  T
Sbjct: 259 -----KHLGINLTVIDGADLFLSRLKGLTEPEAKRKVIGSTFIDLFEEEAIRIEKAAENT 313

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173
           P          K    L  T             I S  + G     +          R  
Sbjct: 314 PN-------AGKVEYFLQGTL--------YPDVIESLSFKGPSATIKTHHNVGGLPAR-- 356

Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                    Q L  L  PL ++ K+ VR+  R++G+ 
Sbjct: 357 -----MMNGQGL-KLIEPLRELFKDEVREFGRQLGIH 387


>gi|170288837|ref|YP_001739075.1| argininosuccinate synthase [Thermotoga sp. RQ2]
 gi|229889901|sp|B1LAP4|ASSY_THESQ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|170176340|gb|ACB09392.1| Argininosuccinate synthase [Thermotoga sp. RQ2]
          Length = 409

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   G+DVI     +         K           A +V  
Sbjct: 4   KVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFDAIKEKALKTG----ASKV-- 57

Query: 82  TINVSHYVFDYEERFRNAVI-----VPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 YV D    F    I             Y  G      +   R V       +  
Sbjct: 58  ------YVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQV------EIAE 105

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 106 KEGAQYVAHG 115


>gi|218530522|ref|YP_002421338.1| argininosuccinate synthase [Methylobacterium chloromethanicum CM4]
 gi|218522825|gb|ACK83410.1| Argininosuccinate synthase [Methylobacterium chloromethanicum CM4]
          Length = 413

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 30/140 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            N    +VV+A SGG+D+S++   L+   G +V+  T                  G+++ 
Sbjct: 6   PNKSVKKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELE 52

Query: 75  DARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTV 124
            ARR  + + +     ++ D  E F    + P   +       Y  G +    +   + +
Sbjct: 53  PARRKAELLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGIYLLGTSIARPLIAKKQI 112

Query: 125 KFSDLLSVTRQLGADVLATG 144
                  +  ++GAD +  G
Sbjct: 113 ------EIAERVGADAVCHG 126


>gi|297271080|ref|XP_002800187.1| PREDICTED: argininosuccinate synthase-like [Macaca mulatta]
          Length = 393

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 7   VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKV------ 59

Query: 83  INVSHYVFDYEERFRNAVIVPFASS-------YAAGETPL-PCVDCNR 122
                ++ D    F    I P   S       Y  G +   PC+ C +
Sbjct: 60  -----FIEDVSREFVQEFICPAIQSSALYEDGYLLGTSLARPCIACKQ 102


>gi|291334084|gb|ADD93757.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S05-C114]
          Length = 302

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 16/18 (88%)

Query: 22  RVVVAMSGGVDSSVVAAL 39
           RV++ +SGGVDSSV AAL
Sbjct: 216 RVILGLSGGVDSSVAAAL 233


>gi|282898430|ref|ZP_06306420.1| Argininosuccinate synthase ExsB [Raphidiopsis brookii D9]
 gi|281196596|gb|EFA71502.1| Argininosuccinate synthase ExsB [Raphidiopsis brookii D9]
          Length = 400

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    L+ +           +   +          G ++   + 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLQHE-----------WGVEEVITLAADLGQGDELEPVKE 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                      V D +E F      P   + A  E   P      R +    L+    + 
Sbjct: 52  KALKSGASESLVADVKESFVQDYAFPAIQANALYENRYPLGTALARPLIAKVLVETAEKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
 gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
          Length = 443

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVY 74
           N K+ R+++A+SGG+DS V+  LL   GYD   +TL    +N R +   +       D  
Sbjct: 15  NLKENRLLIAISGGLDSVVLTHLLFNAGYD---ITLAHCNFNLRDSESDQ-------DEQ 64

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R + D   +  +V  +E            S YA+    +      R +++     + +
Sbjct: 65  FVRELADRFKIDCHVTQFE-----------TSQYASDH-GVSTQMAARELRYDFFNDLCK 112

Query: 135 QLGADVLATGHYI 147
               D + T H++
Sbjct: 113 DHNYDFILTAHHL 125


>gi|89901065|ref|YP_523536.1| GMP synthase [Rhodoferax ferrireducens T118]
 gi|122479092|sp|Q21W48|GUAA_RHOFD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|89345802|gb|ABD70005.1| GMP synthase (glutamine-hydrolyzing) [Rhodoferax ferrireducens
           T118]
          Length = 536

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           V++ +SGGVDSSV AAL+ R  G  +  V 
Sbjct: 229 VILGLSGGVDSSVAAALIHRAIGEQLTCVF 258


>gi|598249|gb|AAB59098.1| argininosuccinate synthase [Lactococcus lactis]
          Length = 61

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
          + ++V+A SGG+D+SV    L   G+DVI   +
Sbjct: 3  NKKIVLAYSGGLDTSVAVKWLTDKGFDVIAACM 35


>gi|57505313|ref|ZP_00371242.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016449|gb|EAL53234.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 252

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V++ +SGG DS  +A LLKR   +      L       A+   G    G+D      
Sbjct: 25  NDKVLLGLSGGKDSLTLAHLLKRMQAHAPFKFEL-----EAATLSYGM---GEDYSKLHA 76

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+   + H V        + +      +     +   C   +R ++   L +   + G 
Sbjct: 77  HCEEHGIKHSVI------ESNIYEISGDTIRENSSF--CSYFSR-MRRGALYTYALEKGF 127

Query: 139 DVLATGHYI 147
           + LA  H++
Sbjct: 128 NKLAIAHHL 136


>gi|229029111|ref|ZP_04185209.1| hypothetical protein bcere0028_12130 [Bacillus cereus AH1271]
 gi|228732209|gb|EEL83093.1| hypothetical protein bcere0028_12130 [Bacillus cereus AH1271]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AAEIAKELGIKHTVLDMS 68


>gi|229149641|ref|ZP_04277872.1| hypothetical protein bcere0011_12000 [Bacillus cereus m1550]
 gi|228633851|gb|EEK90449.1| hypothetical protein bcere0011_12000 [Bacillus cereus m1550]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AAEIAKELGIKHTVLDMS 68


>gi|228920152|ref|ZP_04083501.1| hypothetical protein bthur0011_11690 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228938555|ref|ZP_04101163.1| hypothetical protein bthur0008_12200 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228951821|ref|ZP_04113919.1| hypothetical protein bthur0006_12350 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228971434|ref|ZP_04132060.1| hypothetical protein bthur0003_12140 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228978047|ref|ZP_04138426.1| hypothetical protein bthur0002_12510 [Bacillus thuringiensis
          Bt407]
 gi|229016689|ref|ZP_04173622.1| hypothetical protein bcere0030_12600 [Bacillus cereus AH1273]
 gi|229022901|ref|ZP_04179421.1| hypothetical protein bcere0029_12470 [Bacillus cereus AH1272]
 gi|229043182|ref|ZP_04190905.1| hypothetical protein bcere0027_12360 [Bacillus cereus AH676]
 gi|229068991|ref|ZP_04202284.1| hypothetical protein bcere0025_11990 [Bacillus cereus F65185]
 gi|229078625|ref|ZP_04211182.1| hypothetical protein bcere0023_12900 [Bacillus cereus Rock4-2]
 gi|229108896|ref|ZP_04238500.1| hypothetical protein bcere0018_11720 [Bacillus cereus Rock1-15]
 gi|229126757|ref|ZP_04255769.1| hypothetical protein bcere0015_12140 [Bacillus cereus BDRD-Cer4]
 gi|229144044|ref|ZP_04272460.1| hypothetical protein bcere0012_12070 [Bacillus cereus BDRD-ST24]
 gi|229177847|ref|ZP_04305220.1| hypothetical protein bcere0005_12110 [Bacillus cereus 172560W]
 gi|228605638|gb|EEK63086.1| hypothetical protein bcere0005_12110 [Bacillus cereus 172560W]
 gi|228639441|gb|EEK95855.1| hypothetical protein bcere0012_12070 [Bacillus cereus BDRD-ST24]
 gi|228656697|gb|EEL12523.1| hypothetical protein bcere0015_12140 [Bacillus cereus BDRD-Cer4]
 gi|228674552|gb|EEL29792.1| hypothetical protein bcere0018_11720 [Bacillus cereus Rock1-15]
 gi|228704695|gb|EEL57124.1| hypothetical protein bcere0023_12900 [Bacillus cereus Rock4-2]
 gi|228714103|gb|EEL65985.1| hypothetical protein bcere0025_11990 [Bacillus cereus F65185]
 gi|228726144|gb|EEL77378.1| hypothetical protein bcere0027_12360 [Bacillus cereus AH676]
 gi|228738436|gb|EEL88912.1| hypothetical protein bcere0029_12470 [Bacillus cereus AH1272]
 gi|228744597|gb|EEL94666.1| hypothetical protein bcere0030_12600 [Bacillus cereus AH1273]
 gi|228781708|gb|EEM29907.1| hypothetical protein bthur0002_12510 [Bacillus thuringiensis
          Bt407]
 gi|228788301|gb|EEM36254.1| hypothetical protein bthur0003_12140 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228807744|gb|EEM54265.1| hypothetical protein bthur0006_12350 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228821153|gb|EEM67170.1| hypothetical protein bthur0008_12200 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228839608|gb|EEM84900.1| hypothetical protein bthur0011_11690 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AAEIAKELGIKHTVLDMS 68


>gi|118476910|ref|YP_894061.1| aluminum resistance protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|229090393|ref|ZP_04221636.1| hypothetical protein bcere0021_12220 [Bacillus cereus Rock3-42]
 gi|118416135|gb|ABK84554.1| preQ(0) biosynthesis protein QueC [Bacillus thuringiensis str. Al
          Hakam]
 gi|228692976|gb|EEL46694.1| hypothetical protein bcere0021_12220 [Bacillus cereus Rock3-42]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AAEIAKELGIKHTVLDMS 68


>gi|60597576|gb|AAX25337.1| unknown [Schistosoma japonicum]
          Length = 146

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386
           + ++ E     +A GQ C FY  +      LGG +I GS
Sbjct: 87  LSIELEVPMRCLAPGQWCAFYDGNV----CLGGAMICGS 121


>gi|307298266|ref|ZP_07578070.1| NAD+ synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916352|gb|EFN46735.1| NAD+ synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 569

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           +  A  +   D  K     +VV+ +SGG+DSS+VAAL  R  G D V GV +
Sbjct: 295 LIAALEIGIRDYVKKNGFKKVVLGLSGGMDSSLVAALAVRAIGNDNVKGVMM 346


>gi|304314090|ref|YP_003849237.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302587549|gb|ADL57924.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 314

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 19/133 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS----KRKGSCCAGQDVY 74
           +  RV+V +SGG DS +V  +L           L+  N  +          S      + 
Sbjct: 47  RGDRVLVGLSGGKDSVMVTDILDE---------LRNRNIIELEAVTIDEGISGYREDGIR 97

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A R C    + H V                       +   C  C    ++  L    R
Sbjct: 98  AAGRFCAERGIPHRVVKL-----KDYAGITLDEIMKNPSRGACTYCGVFRRW-ILNREAR 151

Query: 135 QLGADVLATGHYI 147
           + GA  +ATGH +
Sbjct: 152 KSGATKIATGHNL 164


>gi|260887263|ref|ZP_05898526.1| ExsB family protein [Selenomonas sputigena ATCC 35185]
 gi|330838980|ref|YP_004413560.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863325|gb|EEX77825.1| ExsB family protein [Selenomonas sputigena ATCC 35185]
 gi|329746744|gb|AEC00101.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185]
          Length = 263

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 30/134 (22%)

Query: 20  DMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           D R+++ +SGG DS   +   A+L++         ++   +             +D   A
Sbjct: 25  DDRILIGISGGKDSIFLAYALAILQKR--------MK--KNFSLCALTIDPQFTEDFPVA 74

Query: 77  RRV--CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSV 132
           R    C+ I++               I           TP   PC  C    +   +   
Sbjct: 75  RIASFCEEISIPFEAVSVN-------IAGTIEE-----TPEKNPCFTC-AFFRRGAINRY 121

Query: 133 TRQLGADVLATGHY 146
            ++ G + +A  H+
Sbjct: 122 AQEHGCNKVAYAHH 135


>gi|57168713|ref|ZP_00367845.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019994|gb|EAL56674.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 251

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGG DS  +A LLKR   +      L       A+   G    G+D       C
Sbjct: 27  KVLLGLSGGKDSLALAHLLKRMQAHAPFKFEL-----EAATLSYGM---GEDYSGLHAHC 78

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +   + H V D      + +      +     +   C   +R ++   L +   + G + 
Sbjct: 79  EEHGIKHSVID------SNIYEVSGDTIRQNSSF--CSYFSR-MRRGALYTYALEKGFNK 129

Query: 141 LATGHYI 147
           LA  H++
Sbjct: 130 LAIAHHL 136


>gi|329924587|ref|ZP_08279632.1| GMP synthase (glutamine-hydrolyzing) [Paenibacillus sp. HGF5]
 gi|328940597|gb|EGG36918.1| GMP synthase (glutamine-hydrolyzing) [Paenibacillus sp. HGF5]
          Length = 309

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V+ A+SGGVDSSVVA L+ + 
Sbjct: 217 EKKVLCALSGGVDSSVVAMLIHKA 240


>gi|329847414|ref|ZP_08262442.1| argininosuccinate synthase [Asticcacaulis biprosthecum C19]
 gi|328842477|gb|EGF92046.1| argininosuccinate synthase [Asticcacaulis biprosthecum C19]
          Length = 411

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G+++  ARR  
Sbjct: 10  KKVVLAYSGGLDTSIILKWLQTE-YQAEVVTF-----------TADLGQGEELEPARRKA 57

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
           + + +     ++ D  E F    + P           Y  G +    +     +      
Sbjct: 58  ELLGIKPENIFIEDLREEFVRDYVFPMFRANTVYEGQYLLGTSIARPLIAKAQI------ 111

Query: 131 SVTRQLGADVLATG 144
            + R++GAD +  G
Sbjct: 112 DIARKVGADAVCHG 125


>gi|329121750|ref|ZP_08250367.1| NAD+ synthetase [Dialister micraerophilus DSM 19965]
 gi|327468220|gb|EGF13706.1| NAD+ synthetase [Dialister micraerophilus DSM 19965]
          Length = 276

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 25/133 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
            D+N K    +V +SGG DS+ VAAL  +  G + VIGV L                  +
Sbjct: 33  FDENGKKSYAIVGISGGKDSATVAALCVKALGKERVIGVLLPN-------------GEQK 79

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA-----GETPL-PCVDCN--RT 123
           D+ DAR+    +++ +   + ++   N  +              G   L      N    
Sbjct: 80  DIDDARKTVKLLDIKNITLNIKKV--NESMRDMLEESEEMRKISGRNELTEDAKINIIPR 137

Query: 124 VKFSDLLSVTRQL 136
           ++ + L +V + L
Sbjct: 138 LRMTALYAVAQML 150


>gi|251779290|ref|ZP_04822210.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083605|gb|EES49495.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 468

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 40/205 (19%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +D +      +++VA+SGG DS  +  +LK            L                 
Sbjct: 10  IDNNLIKSGDKILVALSGGPDSLCLLNILKE-----------LREELDIEIGAAHLNHLL 58

Query: 72  DVYDA-------RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
              DA          C  +N+ +YV          V     + Y+     L      R V
Sbjct: 59  RGEDAFKDEEFVISTCKEMNIPYYV--------KRV---DINKYSKEH-KLSSELAGRNV 106

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           ++     + ++ G + +AT H    +            + R   LE      L      +
Sbjct: 107 RYGFFDEILKKDGFNKIATAHNANDQAE-----TIIFRLMRGTGLE-----GLGGIKVCR 156

Query: 185 LCDLRFPLGDMKKESVRDLAREMGL 209
              +  P+  + ++ V    +E  L
Sbjct: 157 EDKIIRPILCLTRKEVEKYIKEKNL 181


>gi|228914011|ref|ZP_04077633.1| hypothetical protein bthur0012_12480 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228845616|gb|EEM90645.1| hypothetical protein bthur0012_12480 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A ++   + + H V D  
Sbjct: 51 --AVKIAKELGIKHTVLDMS 68


>gi|225873461|ref|YP_002754920.1| exsB protein [Acidobacterium capsulatum ATCC 51196]
 gi|254764291|sp|C1F844|QUEC_ACIC5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|225791467|gb|ACO31557.1| exsB protein [Acidobacterium capsulatum ATCC 51196]
          Length = 229

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           PK  R VV +SGG+DS V AA+  RD Y+   +              G     +++  A
Sbjct: 2  TPKRERAVVCLSGGMDSCVCAAIAARD-YEPYAIHF----------SYGQRTEARELVSA 50

Query: 77 RRVCDTINVS 86
          R V + +   
Sbjct: 51 RSVAERLGFK 60


>gi|194333159|ref|YP_002015019.1| GMP synthase [Prosthecochloris aestuarii DSM 271]
 gi|194310977|gb|ACF45372.1| GMP synthase, large subunit [Prosthecochloris aestuarii DSM 271]
          Length = 518

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 36/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ K   +  V+  +SGGVDS+V A L+ +  G  +  V +     RK    K       
Sbjct: 218 EIRKTAGNATVICGISGGVDSTVAAVLVSKAIGKKLHCVFVNNGLLRKNEGEK------- 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                  +   + ++  + D EE F      V  P       G T +        +    
Sbjct: 271 ----VMSILKPLGLNITMVDAEEIFLKRLKSVASPEKKRKIIGRTFI--HIFEEQIHEEK 324

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L                I S    G     +                +    ++    L
Sbjct: 325 FL-------VQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKLKL 365

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+D
Sbjct: 366 IEPLRELFKDEVRAVGRELGID 387


>gi|150016153|ref|YP_001308407.1| putative ATP binding protein [Clostridium beijerinckii NCIMB
          8052]
 gi|149902618|gb|ABR33451.1| putative ATP binding protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 220

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          +VVV+ SGG D ++    + + GY +IG  VT           +K S          + +
Sbjct: 5  KVVVSFSGGKDCTLALYRMIKSGYKIIGLLVTF--------ESKKDSYFHKIPRNVFQDI 56

Query: 80 CDTINVSHYVFD------YEERFR 97
             + +     D      YEE F 
Sbjct: 57 SKELGIPLIEIDCSNKNNYEEEFE 80


>gi|109899268|ref|YP_662523.1| exsB protein [Pseudoalteromonas atlantica T6c]
 gi|123064352|sp|Q15RL9|QUEC_PSEA6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|109701549|gb|ABG41469.1| preQ(0) biosynthesis protein QueC [Pseudoalteromonas atlantica
          T6c]
          Length = 218

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V  +  ++GY+V  ++   Y  R            +++  A R C
Sbjct: 3  QKVVVIFSGGMDSFTVLNMAVKEGYEVHALSF-NYGQR----------HSKELDYASRAC 51

Query: 81 DTINVSHYVFDYE 93
           T+ V+H + D  
Sbjct: 52 ITLGVAHKIIDIS 64


>gi|255075213|ref|XP_002501281.1| predicted protein [Micromonas sp. RCC299]
 gi|226516545|gb|ACO62539.1| predicted protein [Micromonas sp. RCC299]
          Length = 542

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 63/201 (31%), Gaps = 35/201 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC---------CAGQDVY 74
           VVA SGGVDSS+VA ++ R             +    S     C              + 
Sbjct: 90  VVAFSGGVDSSLVAHVVHRA-------FGAGDDDDDRSDASPRCVAAIGVSPSLPQSQLQ 142

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR V   I +    ++      +         Y A      C  C  T+ +S L     
Sbjct: 143 IARDVARHIGIPL--WELRTNEGD------VPEYVA-NDGESCAHCKNTL-YSTL----- 187

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM--DLERDQSYFLFATTQQQLCDLRFPL 192
           +  A   A      +   V    ++  ++      D  +D +  L          +  P 
Sbjct: 188 RAVAAAAAAADAEAAPSDVAPSAEQHVVLYNGTNADDLKDPT-RLGILAAAH-HRVESPA 245

Query: 193 GDMKKESVRDLAREMGLDIAD 213
             + K  VR LAR  GL   +
Sbjct: 246 CHLDKTRVRRLARAAGLPNWN 266


>gi|148270200|ref|YP_001244660.1| argininosuccinate synthase [Thermotoga petrophila RKU-1]
 gi|166221028|sp|A5ILL1|ASSY_THEP1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|147735744|gb|ABQ47084.1| argininosuccinate synthase [Thermotoga petrophila RKU-1]
          Length = 409

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   G+DVI     +         K           A +V  
Sbjct: 4   KVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFDAIKEKALKTG----ASKV-- 57

Query: 82  TINVSHYVFDYEERFRNAVI-----VPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 YV D    F    I             Y  G      +   R V       +  
Sbjct: 58  ------YVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQV------EIAE 105

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 106 KEGAQYVAHG 115


>gi|37526660|ref|NP_930004.1| hypothetical protein plu2770 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786092|emb|CAE15144.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 510

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 34/154 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V +  SGG+DS++V  L K+  +D+  ++  L                +D+  A+R 
Sbjct: 228 DLPVSIMFSGGIDSTIVLYLAKKYHHDITAISFGL-------------PGSKDIEIAQRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   N+ H ++ + +      I                        + +       + + 
Sbjct: 275 CTENNIKHIIYTFTQEELINNIQDAIY-------------------YGEFFEQIDAIDST 315

Query: 140 VLATGHYIRSRL--YVGDDGKRRRIMCRPMDLER 171
           +   G+YI +RL   +   G+    +    DL +
Sbjct: 316 IAHFGYYIANRLGFKIALCGEGSDEIFAGYDLFK 349


>gi|145220392|ref|YP_001131101.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|226739666|sp|A4SGJ0|GUAA_PROVI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145206556|gb|ABP37599.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium phaeovibrioides
           DSM 265]
          Length = 513

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 36/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +   +  V+  +SGGVDS+V A L+ +  G  +  V +     RK    K       
Sbjct: 213 DIRERAGNNTVICGISGGVDSTVAAVLVSKAIGKQLHCVFVDNGLLRKNEAEK------- 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                 +    + +   + D  + F      V  P       G T +   +    +    
Sbjct: 266 ----VMQFLKPLGLKVTLADSRDLFLTRLKGVASPEKKRKIIGRTFIRVFE--EHIHEEK 319

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L                I S    G     +                +    ++    L
Sbjct: 320 FL-------VQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKLKL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 361 IEPLRELFKDEVRAVGRELGIA 382


>gi|262306093|gb|ACY45639.1| gln amidotransferase [Phrynus marginemaculatus]
          Length = 196

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++ +SGGVDS+V AALL +   D  VI + +          RK      +        
Sbjct: 45  KVLMLVSGGVDSTVCAALLHKALKDDQVIAIHIDN-----GFMRKNESVQVEMSL----- 94

Query: 80  CDTINVSHYVFDYEERFRN 98
              + +   V +    F N
Sbjct: 95  -KQLGLKMKVINAAHNFYN 112


>gi|320108278|ref|YP_004183868.1| GMP synthase large subunit [Terriglobus saanensis SP1PR4]
 gi|319926799|gb|ADV83874.1| GMP synthase, large subunit [Terriglobus saanensis SP1PR4]
          Length = 551

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +  +SGGVDSSV A L++R  G  +  + +     RK    K                + 
Sbjct: 251 ICGLSGGVDSSVAAVLVQRAIGDRLTCIFVNNGVLRKDEFTKVQATMR----------EK 300

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQLG 137
           + +     D  +RF +            G T     +  R +   + +        + L 
Sbjct: 301 LGLKVVAVDASKRFLSQ---------LGGIT---DPETKRKIIGREFITVFDDEAAKILA 348

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+   +      +  +  D      +  P    +   + +    +     L  PL D+ K
Sbjct: 349 AEASDSEVAWLVQGTLYPDVIESSSVKGPSQTIKSH-HNVGGLPENMKLKLIEPLRDLFK 407

Query: 198 ESVRDLAREMGLD 210
           + VR + R++ + 
Sbjct: 408 DEVRRIGRDLKMP 420


>gi|282898573|ref|ZP_06306561.1| Argininosuccinate synthase ExsB [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196441|gb|EFA71350.1| Argininosuccinate synthase ExsB [Cylindrospermopsis raciborskii
           CS-505]
          Length = 400

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    L+ +           +   +          G ++   + 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLQHE-----------WGVEEVITLAADLGQGDELEPVKE 51

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
                      V D +E F      P   + A  E   P      R +    L+    + 
Sbjct: 52  KALKSGASESLVADVKESFVQDYAFPAIQANALYENRYPLGTALARPLIAKVLVETAEKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|256831890|ref|YP_003160617.1| GMP synthase, large subunit [Jonesia denitrificans DSM 20603]
 gi|256685421|gb|ACV08314.1| GMP synthase, large subunit [Jonesia denitrificans DSM 20603]
          Length = 534

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 45/202 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDSSV AAL++R  G  +  V     +     + +        V        
Sbjct: 232 VICGLSGGVDSSVAAALVQRAIGDQLTCVF---VDHGLLREGEAEQVEVDFV-------Q 281

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQLG 137
           +  V   V D  E+F NA          AG T     +  R +             R++ 
Sbjct: 282 STGVHLKVIDAREQFLNA---------LAGVT---DPETKRKIIGREFIRAFEGAAREIV 329

Query: 138 AD---------VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           AD          L  G      +  G  G       +           +          L
Sbjct: 330 ADAGDKDGDVKWLVQGTLYPDVVESG--GGEGAANIKSHHN-------VGGLPDDLQFQL 380

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL  + K+ VR +  E+G+ 
Sbjct: 381 IEPLRTLFKDEVRAVGVELGVP 402


>gi|269925434|ref|YP_003322057.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789094|gb|ACZ41235.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
          Length = 417

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 79/219 (36%), Gaps = 43/219 (19%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNS 57
           M +S   ++ ++++   PK  +V +A SGG+DS++   LL+   Y   ++I +T      
Sbjct: 1   MALSPLEKIQAVEV---PKYRKVALAYSGGLDSALCLVLLREK-YGAEEIIPIT------ 50

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
                 +G     Q    A    + + V   + D +  F N  +     + ++     P 
Sbjct: 51  --VDVGQGQDEVEQSFKKA----EVLGVEPLLIDAKSEFTNEWLTKAIRANSSYN-GYPV 103

Query: 118 VDC-NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
                R +  + +     +LG D LA G   +        G  +  M +         YF
Sbjct: 104 STSMTRQLIAAKVAQKAVELGCDALAEGSSGK--------GNDQYRMHKVFK------YF 149

Query: 177 LFATTQQQLCDLRFPL--GDMKKESVRDLAREMGLDIAD 213
                      +  P+   D+ +    +L    G+ + +
Sbjct: 150 APQLG------IIVPVRDFDLTRTEEMELCEHYGVPVTE 182


>gi|188586483|ref|YP_001918028.1| asparagine synthase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351170|gb|ACB85440.1| asparagine synthase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 492

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDSSVVAA L                 +            +D+ +A  V   +   
Sbjct: 223 LSGGVDSSVVAAALA------------NLTDKPIHTFAVGIEDSEDIKNAEEVSQYLGTE 270

Query: 87  HYVFDYEERFRNAV 100
           H V  Y E     V
Sbjct: 271 HTVLTYTEEDMFEV 284


>gi|218896373|ref|YP_002444784.1| exsB protein [Bacillus cereus G9842]
 gi|254764303|sp|B7IN35|QUEC_BACC2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|218543833|gb|ACK96227.1| exsB protein [Bacillus cereus G9842]
          Length = 220

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   YN R   K +  C        A +
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC--------AAK 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|15835107|ref|NP_296866.1| hypothetical protein TC0489 [Chlamydia muridarum Nigg]
 gi|270285278|ref|ZP_06194672.1| hypothetical protein CmurN_02488 [Chlamydia muridarum Nigg]
 gi|270289294|ref|ZP_06195596.1| hypothetical protein CmurW_02553 [Chlamydia muridarum Weiss]
 gi|301336674|ref|ZP_07224876.1| hypothetical protein CmurM_02540 [Chlamydia muridarum MopnTet14]
 gi|7190530|gb|AAF39335.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 259

 Score = 46.3 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 38/197 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K   + VA+SGG DS +   L+ +     G+      L ++      K   SC A     
Sbjct: 33  KHTHIAVALSGGKDS-LSLLLMLKAISGRGFP----ELTIHAIHIGGKY--SCGAAVSGN 85

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVT 133
               +CD I V                       +  ET  P C  C+R ++   L    
Sbjct: 86  YLSSICDKIQVPLISIP-----------------SPYETENPECYTCSR-IRRRLLFDAA 127

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           + +GA  +A GH+    +         +     M    D   F        L  L F   
Sbjct: 128 KSVGATAVAFGHHRDDVIQTALMNLLHKAEFAGMLPVVDMVNFGITI----LRPLIFIPE 183

Query: 194 DMKKESVRDLAREMGLD 210
           ++    +R  A+E G  
Sbjct: 184 EL----IRKFAKESGFA 196


>gi|257056543|ref|YP_003134375.1| argininosuccinate synthase [Saccharomonospora viridis DSM 43017]
 gi|256586415|gb|ACU97548.1| argininosuccinate synthase [Saccharomonospora viridis DSM 43017]
          Length = 402

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVV+A SGG+D+SV    +  +     G       +   +        G+D+   R+   
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEE----TG-------AEVVAVAVDVGQGGEDMETIRKRAL 52

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               V   V D ++ F     +P   + A      P V   +R +    L+    + GA 
Sbjct: 53  ECGAVEAVVSDAKDEFAEEYCLPALQANALYMDRYPLVSALSRPLIVKHLVRAAERYGAT 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDM--K 196
            +A G                   C       DQ  F            +  P+ D    
Sbjct: 113 TVAHG-------------------CTGK--GNDQVRFEVGIGALAPDLKVIAPVRDFAWT 151

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E     A E  L I     S
Sbjct: 152 REKAISWAEERNLPIDVTKKS 172


>gi|154500399|ref|ZP_02038437.1| hypothetical protein BACCAP_04066 [Bacteroides capillosus ATCC
           29799]
 gi|150270904|gb|EDM98187.1| hypothetical protein BACCAP_04066 [Bacteroides capillosus ATCC
           29799]
          Length = 430

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +     G    G ++       
Sbjct: 30  KKVVLAYSGGLDTSIIIPWLKE-----------NYNNPEIIAVSGDVGQGTELDGLEEKA 78

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                   YV D  +   + VI+P     A  E  L      R +    L+ + ++ GAD
Sbjct: 79  IKTGASKLYVEDLTDEMVDDVIIPSMQMGAKYEDYLLGTAFARPIIAKRLVEIAKKEGAD 138

Query: 140 VLATG 144
            +  G
Sbjct: 139 AICHG 143


>gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
 gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
          Length = 417

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 30/132 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           P   R+ VAMSGG DS  +  LL     + G ++            +        A  ++
Sbjct: 20  PDARRIGVAMSGGGDSMALLHLLADWAAQSGAELRAA---------SVDHGLRPEAADEI 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A + C  + + H                      AG          R  ++  L    
Sbjct: 71  ALAAKTCAALGIPHDSL-------------TWDEAPAGN----LQAAARDARYRLLSDWA 113

Query: 134 RQLGADVLATGH 145
           +  G  V+  GH
Sbjct: 114 QAQGCAVVCLGH 125


>gi|307720799|ref|YP_003891939.1| argininosuccinate synthase [Sulfurimonas autotrophica DSM 16294]
 gi|306978892|gb|ADN08927.1| argininosuccinate synthase [Sulfurimonas autotrophica DSM 16294]
          Length = 408

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G+++  AR   
Sbjct: 6   KKVVLAYSGGLDTSVILKWLQDE-YKCEVVTF-----------TADLGQGEELEPARTKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R        
Sbjct: 54  LELGIKPENIFIDDLREEFVKDFVFPMFRANAIYEGEYLLGTSIARPLIAKRQ------A 107

Query: 131 SVTRQLGADVLATG 144
            + +  GAD +A G
Sbjct: 108 EIAKITGADGVAHG 121


>gi|326203400|ref|ZP_08193264.1| exsB protein [Clostridium papyrosolvens DSM 2782]
 gi|325986220|gb|EGD47052.1| exsB protein [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+    + K  GY++  ++   +N  +   ++  C        A+ + 
Sbjct: 3  KKAVVLLSGGMDSTTALYIAKSQGYEIYAIS---FNYGQRHFKELEC--------AKIIS 51

Query: 81 DTINVSHYVF 90
          +   V  ++ 
Sbjct: 52 EKAGVKEHII 61


>gi|317181672|dbj|BAJ59456.1| NH(3)-dependent NAD+ synthetase [Helicobacter pylori F57]
          Length = 260

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 46/218 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DARRV 79
            +VV  +SGG+DS++V  L +           +++     +    S  +  +   DA  +
Sbjct: 26  KKVVYGLSGGLDSALVGVLCQ-----------KVFKENAHALLMPSLVSMPESKTDALNL 74

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+T ++ +  +       +A+        +       C      ++ + L   + +    
Sbjct: 75  CETFSIPYTEYSIAP--YDAIFDSHFKDASLTRKGNFC----ARLRMAFLYDYSLK---- 124

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                      L +G   K  R++              + T    L     P+G++ K  
Sbjct: 125 --------SDSLVIGTSNKSERML-------------GYGTLFGDLACAINPIGELFKTE 163

Query: 200 VRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRI 235
           V +LA  + +   I +K  S D+ FV Q    D+    
Sbjct: 164 VYELACHLNIPEKILNKPPSADL-FVGQSDEKDLGYPY 200


>gi|325111074|ref|YP_004272142.1| preQ(0) biosynthesis protein QueC [Planctomyces brasiliensis DSM
          5305]
 gi|324971342|gb|ADY62120.1| preQ(0) biosynthesis protein QueC [Planctomyces brasiliensis DSM
          5305]
          Length = 230

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV +SGG+DSS   A+ +  G++       L+    A           ++  ARR+  
Sbjct: 6  KAVVLLSGGLDSSTTLAIAREQGFE-------LW----AISFDYGQKHRFELDAARRLAQ 54

Query: 82 TINVSHYVF 90
            +V  +V 
Sbjct: 55 AFDVKKHVI 63


>gi|294055941|ref|YP_003549599.1| argininosuccinate synthase [Coraliomargarita akajimensis DSM 45221]
 gi|293615274|gb|ADE55429.1| argininosuccinate synthase [Coraliomargarita akajimensis DSM 45221]
          Length = 417

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+A SGG+D+SV+ + LK             + S +           +++       
Sbjct: 1   MKIVLAYSGGLDTSVLVSWLKE------------HYSAEIITFAADVGQEEELDGLAEKA 48

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                S HY  D  + F    I P           Y  G +    +     V       +
Sbjct: 49  KATGASAHYTVDLVDEFARDFIFPMMRANAIYEGQYLLGTSIARPLISKAHV------EI 102

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 103 AEREGADAVAHG 114


>gi|323343215|ref|ZP_08083446.1| hypothetical protein HMPREF0357_11627 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463279|gb|EFY08474.1| hypothetical protein HMPREF0357_11627 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 584

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 2/31 (6%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           +V +SGG+DSSV  ALL +  G D V+GVT+
Sbjct: 288 IVGVSGGLDSSVSIALLVKALGKDRVVGVTM 318


>gi|134103131|ref|YP_001108792.1| GMP synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003926|ref|ZP_06561899.1| GMP synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915754|emb|CAM05867.1| GMP synthase glutamine amidotransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 528

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 63/206 (30%), Gaps = 47/206 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR- 77
           D R +  +SGGVDS+V AAL++R  G  +  V                    +    A+ 
Sbjct: 223 DKRAICGLSGGVDSAVAAALVQRAVGDQLTCVF-------------VDHGLLRAGERAQV 269

Query: 78  ---RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLL 130
               V  T  V     D  +RF  A          AG T     +  R +          
Sbjct: 270 ERDFVAAT-GVRLVTIDARDRFLAA---------LAGVT---DPEEKRKIIGREFIRVFE 316

Query: 131 SVTRQLGADVLATGHYI------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
              R L A+  A G  I           V + G             +            Q
Sbjct: 317 QAARDLQAEAGAEGEQIDFLVQGTLYPDVVESGGG-----SGAANIKSHHNVGGLPEDLQ 371

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL  + K+ VR +  E+GL 
Sbjct: 372 FD-LVEPLRALFKDEVRRVGLELGLP 396


>gi|253576605|ref|ZP_04853933.1| exsB protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844019|gb|EES72039.1| exsB protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 222

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + VV  SGG DS+       +   +V  VT   ++  +  K +  C        A+ 
Sbjct: 3   KKEKAVVVFSGGQDSTTCLFWAIQQFGEVEAVT---FDYGQRHKLEIEC--------AKS 51

Query: 79  VCDTINVSHYVFDYE---ERFRNAVIVPFAS-SYAAGETPLP--CVDCNRTVKFSDLLSV 132
           +   + + H V D     +   NA+     +  +  GE P        +  + F+ +L  
Sbjct: 52  ITAELGIKHTVLDMSLLGQLTANALTRSDIAIEHQEGELPSTFVDGRNHLFLSFAAVL-- 109

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + +GA  + TG           D       CR + ++        A   + +     PL
Sbjct: 110 AKGVGAKHIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYEFVIHT--PL 159

Query: 193 GDMKKESVRDLAREMG 208
             + K     LA E+G
Sbjct: 160 MWIDKAETWKLADELG 175


>gi|188588191|ref|YP_001919610.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498472|gb|ACD51608.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 468

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 40/199 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA- 76
               +++VA+SGG DS  +  +LK            L                    DA 
Sbjct: 16  KSGDKILVALSGGPDSLCLLNILKE-----------LREELDIEIGAAHLNHLLRGEDAF 64

Query: 77  ------RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                    C  +N+ +YV          V     + Y+     L      R V++    
Sbjct: 65  KDEEFVISTCKEMNIPYYV--------KRV---DINKYSKEH-KLSSELAGRNVRYGFFD 112

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            + ++ G + +AT H    +            + R   LE      L      +   +  
Sbjct: 113 EILKKDGFNKIATAHNANDQAE-----TIIFRLMRGTGLE-----GLGGIKVCREDKIIR 162

Query: 191 PLGDMKKESVRDLAREMGL 209
           P+  + ++ V    +E  L
Sbjct: 163 PILCLTRKEVEKYIKEKNL 181


>gi|145590572|ref|YP_001152574.1| NAD+ synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|145282340|gb|ABP49922.1| NH(3)-dependent NAD(+) synthetase [Pyrobaculum arsenaticum DSM
           13514]
          Length = 267

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 51/193 (26%)

Query: 32  DSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+V A L     G + V+G+ +                  +DV DA  V   + +   +
Sbjct: 44  DSTVAATLAAEALGPHRVLGLVM-----------PSIFTPQEDVKDALEVAGRLGIETRL 92

Query: 90  FD---YEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVLATG 144
            D     E F  + I  F+  Y            N    ++ + L     +    V+ TG
Sbjct: 93  IDVTPISEAFAKS-IPDFSPGYRLA-------SGNLLPRIRMTILYYYANRDNRLVMGTG 144

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
              RS L +G   K         D   D                  P+  + K  VR++A
Sbjct: 145 D--RSELLLGYFTKY-------GDGGAD----------------FLPIAPLYKLQVREMA 179

Query: 205 REMGLDIADKSDS 217
           R +G     +  S
Sbjct: 180 RRLGFPHIAQKPS 192


>gi|291541927|emb|CBL15037.1| argininosuccinate synthase [Ruminococcus bromii L2-63]
          Length = 407

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 25/136 (18%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K  +VV+A SGG+D+S++   LK             Y++ +     G    G ++   
Sbjct: 3   DNKIKKVVLAYSGGLDTSIIIPWLKE-----------NYDNCEVIAVSGDVGQGTELDGL 51

Query: 77  RRVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
                       Y+ D  + F +  I+P           Y  G +        R +    
Sbjct: 52  EEKAIKTGASKLYIEDLNKEFVDEYIIPTVKAGAVYEGKYLLGTSFA------RPIIAKR 105

Query: 129 LLSVTRQLGADVLATG 144
           L+ + +  GAD +  G
Sbjct: 106 LVEIAKAEGADAICHG 121


>gi|145593248|ref|YP_001157545.1| argininosuccinate synthase [Salinispora tropica CNB-440]
 gi|145302585|gb|ABP53167.1| Argininosuccinate synthase [Salinispora tropica CNB-440]
          Length = 408

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
              +V+A SGG+D+SV    LK   +             + +    +   G ++  A R 
Sbjct: 9   PQHIVLAFSGGLDTSVALVWLKERYH------------CRLTAFIANLGQGAELDTAARK 56

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
            + +      V D    F      P   + A  E   L      R +  +  L V  ++G
Sbjct: 57  AEKLGADEVRVADLRGEFARDYAFPMYRANALYEGQYLMGSSIGRPLIAAAQLRVVEEVG 116

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 117 ADAVAHG 123


>gi|157869598|ref|XP_001683350.1| argininosuccinate synthase [Leishmania major strain Friedlin]
 gi|68126415|emb|CAJ03985.1| putative argininosuccinate synthase [Leishmania major strain
           Friedlin]
          Length = 419

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A SGG+D+SV+   LK +  Y+VI           A+  +G+         A++   
Sbjct: 16  VVLAYSGGLDTSVIIPWLKENYDYEVIAC--------CANVGQGAGEIDGLEEKAKKAGA 67

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140
           +     Y+ D  E +    I P   + A  E        + R +    L+ V  + GA  
Sbjct: 68  S---KLYLLDLREEYVTDYIFPTLKAGAMYEGKYMLGTSHARPLIAKHLVEVAHKEGAVA 124

Query: 141 LATG 144
           +  G
Sbjct: 125 ICHG 128


>gi|319745034|gb|EFV97362.1| GMP synthase [Streptococcus agalactiae ATCC 13813]
          Length = 520

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 36/213 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKA 60
           +     +    + +   D +V++ +SGGVDSSVV  LL+R     IG  +T    +    
Sbjct: 208 MDNFIDMEIAKIRETVGDRKVLLGLSGGVDSSVVGVLLQRA----IGDQLTCIFVDHGLL 263

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPC 117
            K +G       V D   +     ++    D  +RF +    V  P              
Sbjct: 264 RKNEGD-----QVMD--MLGGKFGLNIIRVDASKRFLDLLSGVEDP---ERKRKIIGNEF 313

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
           V       F D    ++  G D LA G        + + G       +           +
Sbjct: 314 VYV-----FDD--EASKLKGVDFLAQG---TLYTDIIESGTETAQTIKSHHN-------V 356

Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
               +    +L  PL  + K+ V  L   +G+ 
Sbjct: 357 GGLPEDMQFELIEPLNTLFKDEVHALGTALGMP 389


>gi|301162414|emb|CBW21959.1| putative ATP-binding PP-loop protein [Bacteroides fragilis 638R]
          Length = 435

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+V +SGG DS V    LL   GY         +   K S R        D    RR
Sbjct: 19  NDKVLVTLSGGTDS-VALLRLLLSMGYTCEAAHCNFHLRDKESDR--------DEAFVRR 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    V  +            I  F ++  A +  +      R +++    ++ RQ  A
Sbjct: 70  LCHESGVLLH------------IEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREA 117

Query: 139 DVLATGHY 146
            V+AT H+
Sbjct: 118 SVIATAHH 125


>gi|169636484|ref|YP_001716025.1| ATP-binding protein [Geobacillus stearothermophilus]
 gi|169403024|emb|CAP08236.1| conserved hypothetical ATP-binding protein [Geobacillus
           stearothermophilus]
          Length = 406

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-------GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++  +V+  SGG DS   A L+ R         + +  VTL+           G      
Sbjct: 131 ENDHIVLGFSGGRDS--TAFLVARQKILNKLPNHKITNVTLRGLPDWDDETAFGYT---- 184

Query: 72  DVYDARRVCDTINVSHYVF---DYEERFR-NAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                + + +   +  YV    D ++ F   A I         G   +  +     +   
Sbjct: 185 -----KELSNKFGIEQYVVEPEDIQQEFNLKAPISEVLDELLHGPDAMHVIWIGHHMIRH 239

Query: 128 DLLSVTRQLGADVLA 142
            L     +L A+ +A
Sbjct: 240 MLRRAAERLNANKVA 254


>gi|119936439|gb|ABM06127.1| asparagine synthetase [Bos taurus]
          Length = 512

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           AR+V + I   H+   +       V+     S    +
Sbjct: 299 ARKVANHIGSEHHEVLFNSEEGIQVLDEVIFSLETYD 335


>gi|300024843|ref|YP_003757454.1| argininosuccinate synthase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526664|gb|ADJ25133.1| argininosuccinate synthase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 409

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 29/142 (20%)

Query: 14  LDKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   PK   +VV+A SGG+D+S++   L+   Y+   VT                  G++
Sbjct: 1   MTAAPKAVKKVVLAYSGGLDTSIILKWLQET-YNAEVVTF-----------TADLGQGEE 48

Query: 73  VYDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNR 122
           +  AR     + +     ++ D  E F    + P   +       Y  G +    +   +
Sbjct: 49  LEPARNKALMLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGIYLLGTSIARPLISKK 108

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
            +       + +++GAD +  G
Sbjct: 109 QI------EIAKKVGADAVCHG 124


>gi|167747131|ref|ZP_02419258.1| hypothetical protein ANACAC_01844 [Anaerostipes caccae DSM 14662]
 gi|167654091|gb|EDR98220.1| hypothetical protein ANACAC_01844 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+      K+   +VI ++   ++  +    +  C        A+ 
Sbjct: 3  KPTKAVVVFSGGQDSTTCLFWAKKKYEEVIALS---FDYGQKHSDELIC--------AKE 51

Query: 79 VCDTINVSHYVFDYE 93
          +C    V H++ D  
Sbjct: 52 ICKKYGVEHHILDMA 66


>gi|162147641|ref|YP_001602102.1| argininosuccinate synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542270|ref|YP_002274499.1| argininosuccinate synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|189046390|sp|A9HIQ4|ASSY_GLUDA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|161786218|emb|CAP55800.1| Argininosuccinate synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529947|gb|ACI49884.1| Argininosuccinate synthase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 409

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +V+  T                  G+++  AR+ 
Sbjct: 7   KKVVLAYSGGLDTSVILRWLQTTYGCEVVTFT-------------ADLGQGEELEPARKK 53

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            +   V      D  E F    + P           Y  G +    +   R +       
Sbjct: 54  AEMFGVKEIFVEDLRETFVKDFVFPMFRANTLYEGQYLLGTSIARPLIAQRQI------E 107

Query: 132 VTRQLGADVLATG 144
           +   +GAD +A G
Sbjct: 108 IAEAVGADAVAHG 120


>gi|161527617|ref|YP_001581443.1| PP-loop domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160338918|gb|ABX12005.1| PP-loop domain protein [Nitrosopumilus maritimus SCM1]
          Length = 304

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVT-L---QLYNSRKASKRKGSCCA-GQDVYDAR 77
           V VA+SGG DS    ALLK        +  +     +  +  +  +G      + +    
Sbjct: 50  VAVAVSGGKDS---LALLK-------IIHEMASSHNFRIKTITIDEGIPGYRNEALEIVE 99

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           + C  + V H V+ Y+  F    +          +T   C  C   ++   +    + +G
Sbjct: 100 KFCGELGVEHKVYSYKNLFELT-LDEALDLRENEKT-SSCSICGT-LRRRAIDHAAKDVG 156

Query: 138 ADVLATGHYI 147
           ADV+ATGH +
Sbjct: 157 ADVIATGHNL 166


>gi|152992854|ref|YP_001358575.1| ExsB family transcriptional regulator [Sulfurovum sp. NBC37-1]
 gi|167016454|sp|A6Q9Q9|QUEC_SULNB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|151424715|dbj|BAF72218.1| transcriptional regulator, ExsB family [Sulfurovum sp. NBC37-1]
          Length = 222

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 31/205 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + V  +SGG+DS++ A + + +GY++I +              G     +++   R++
Sbjct: 2   GKKAVCIISGGMDSALSAKIAQEEGYEIIALHF----------NYGQRTRNKELECFRKI 51

Query: 80  CDTINV-SHYVFDYEERFRNAV---------IVPFASSYAAGETPLPCVDCNRTVKFSDL 129
              +N    Y  D    F   +         I         G  P+  V     +  S  
Sbjct: 52  TQELNASESYEIDL--DFFEQIGASALTDKSIDVPIGGLEEGV-PVTYVPFRNGIFLSIA 108

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            ++  + GA+ L  G        V +D       CR   +E+ Q      T  +   +++
Sbjct: 109 AAIAEKHGAEALFIG-------VVEEDSSGYPD-CRESYIEQMQKAINLGTKDETNIEIK 160

Query: 190 FPLGDMKKESVRDLAREMGLDIADK 214
            PL  ++K  +   A E+G+ + D 
Sbjct: 161 MPLVSLRKSQIVQKAIELGVPLEDT 185


>gi|124026870|ref|YP_001015985.1| ATPase [Prochlorococcus marinus str. NATL1A]
 gi|167016443|sp|A2C5G1|QUEC_PROM1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|123961938|gb|ABM76721.1| hypothetical ATPase [Prochlorococcus marinus str. NATL1A]
          Length = 225

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 23/198 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+  A +    G  VIG+          S   G     +++  A  +   +
Sbjct: 7   IALLSGGIDSATAACIAMEAGQKVIGL----------SFDYGQ-RHLKELQAAADLAKNL 55

Query: 84  NVSHYV---FDYEERFRNAVIVPFASSYAAGET----PLPCVDCNRTVKFSDLLSVTRQL 136
           N+  ++    D      +++     +    G      P   V    T+  +  LS+    
Sbjct: 56  NLEDHITIKIDLSSWGGSSLTDTSQAIPTKGIQKNTIPNTYVPGRNTIFVAIGLSLAEAR 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+ +A G          D    R    +      + S  +    +     L  PL D +
Sbjct: 116 GANRIALGINAMDYSGYPDC---RPDYLKAYQELANLSSRVGREGKGI--KLWAPLLDWE 170

Query: 197 KESVRDLAREMGLDIADK 214
           K  + + A  + + I   
Sbjct: 171 KTKIFEEALRLKIPIEKT 188


>gi|119871537|ref|YP_929544.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119672945|gb|ABL87201.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 304

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 28/133 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGY--------DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           + VA+SGG DS    ALLK   Y        +V    + L          G   + +   
Sbjct: 36  IYVAVSGGKDSCAALALLKE--YIEEYRIDAEVRAFHINL----------GFRTSAKIEE 83

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R + + + V  +V                   AA  T  P       VK   +  V R
Sbjct: 84  AVRTLAEALGVGIHVVYAR--------DYLDIEAAARATGRPICSVCGAVKRYLMNKVPR 135

Query: 135 QLGADVLATGHYI 147
           +LGA  +ATGH+ 
Sbjct: 136 ELGATKVATGHHA 148


>gi|260576149|ref|ZP_05844142.1| argininosuccinate synthase [Rhodobacter sp. SW2]
 gi|259021629|gb|EEW24932.1| argininosuccinate synthase [Rhodobacter sp. SW2]
          Length = 409

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVMTFT-------------ADLGQGEELEPARA 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
               + +     Y+ D  E F    + P   + A  E          R +    L+ +  
Sbjct: 51  KAVLLGIDPKNIYIEDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLIAKRLVEIAA 110

Query: 135 QLGADVLATG 144
             GAD +A G
Sbjct: 111 LTGADAVAHG 120


>gi|157813148|gb|ABV81319.1| putative GMP synthetase [Speleonectes tulumensis]
          Length = 197

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQL 54
          + +V++ +SGGVDS+V AALL +   +  V+ V +  
Sbjct: 43 NNKVLMLVSGGVDSTVCAALLHKALKEDQVVAVHIDN 79


>gi|262306091|gb|ACY45638.1| gln amidotransferase [Polyzonium germanicum]
          Length = 197

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AALL +      VI + +     RK    +           A 
Sbjct: 43  DNKVLMMLSGGVDSTVCAALLNKALKADQVIALHIDNGFMRKGESEEV----------AN 92

Query: 78  RVCDTINVSHYVFDYEERF 96
            +   I +   V + +  F
Sbjct: 93  NLA-KIGLKTRVLNCQHTF 110


>gi|115974803|ref|XP_001180974.1| PREDICTED: similar to argininosuccinate synthetase, partial
           [Strongylocentrotus purpuratus]
          Length = 693

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+S +   L  +GYDV+  T                  G D    R+
Sbjct: 8   KKGKVVLAYSGGLDTSCILVWLIEEGYDVVAYT-------------ADVGQGDDYDAIRK 54

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDL 129
                  + + V D +  F    I P   + A  E           PC+          +
Sbjct: 55  KAMKCGAIDYVVKDLKRDFVVENIWPAVQANAKYEDRYLLGTALARPCIS-------KGI 107

Query: 130 LSVTRQLGADVLATG 144
           + V ++  A  ++ G
Sbjct: 108 IEVVKEHNAQAVSHG 122


>gi|115630519|ref|XP_789011.2| PREDICTED: similar to argininosuccinate synthetase, partial
           [Strongylocentrotus purpuratus]
          Length = 690

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+S +   L  +GYDV+  T                  G D    R+
Sbjct: 8   KKGKVVLAYSGGLDTSCILVWLIEEGYDVVAYT-------------ADVGQGDDYDAIRK 54

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPL--------PCVDCNRTVKFSDL 129
                  + + V D +  F    I P   + A  E           PC+          +
Sbjct: 55  KAMKCGAIDYVVKDLKRDFVVENIWPAVQANAKYEDRYLLGTALARPCIS-------KGI 107

Query: 130 LSVTRQLGADVLATG 144
           + V ++  A  ++ G
Sbjct: 108 IEVVKEHNAQAVSHG 122


>gi|6010228|emb|CAB57292.1| asparagine synthetase (type-I) [Phaseolus vulgaris]
          Length = 579

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 31/175 (17%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSS+VAA           VT +      A+K  G+             D+  A
Sbjct: 230 VLLSGGLDSSLVAA-----------VTARYLEGTNAAKHWGTKLHSFCVGLEGAPDLKAA 278

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG-----ETPLPCVDCNRTVK-FSDLL 130
           R V D I   H+ F Y  +     I                  +P    +R +K      
Sbjct: 279 REVADYIGTVHHEFHYSVQDGIDAIEDVIYHIETYDVTTIRASIPMFLMSRKIKSLGVKW 338

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFAT 180
            +  + G+D +  G+    +    ++  +        + +   L  ++S F +  
Sbjct: 339 DICGE-GSDEIYGGYLYFHKAPNKEEFHQETCRKIKALHKYDCLRANKSTFAWGL 392


>gi|113474696|ref|YP_720757.1| argininosuccinate synthase [Trichodesmium erythraeum IMS101]
 gi|119361343|sp|Q117P0|ASSY_TRIEI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|110165744|gb|ABG50284.1| argininosuccinate synthase [Trichodesmium erythraeum IMS101]
          Length = 400

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 29/136 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +  ++          G ++   R+
Sbjct: 3   RATKVVLAYSGGVDTSVCIPYLKNE-----------WGVKEVITLAADLGQGDELEGVRK 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSY--------AAGETPLPCVDC-NRTVKFSD 128
                  V   V D        VI P    Y        A  E   P      R +    
Sbjct: 52  KALDSGAVESLVID--------VIEPLIKEYAFPAIQANALYENRYPLATALARPLIAKI 103

Query: 129 LLSVTRQLGADVLATG 144
           L+    + GAD +A G
Sbjct: 104 LVEAAEKYGADAIAHG 119


>gi|326336310|ref|ZP_08202481.1| GMP synthase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691484|gb|EGD33452.1| GMP synthase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 507

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           L K     +VV+ +SGGVDS+V A LL R 
Sbjct: 205 LKKQVGKEKVVLGLSGGVDSTVAAVLLNRA 234


>gi|313892230|ref|ZP_07825823.1| NAD+ synthase [Dialister microaerophilus UPII 345-E]
 gi|313119368|gb|EFR42567.1| NAD+ synthase [Dialister microaerophilus UPII 345-E]
          Length = 263

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 15/83 (18%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+N K    +V +SGG DS+ VAAL  +  G + VIGV L                  +
Sbjct: 20 FDENGKKSYAIVGISGGKDSATVAALCVKALGKERVIGVLLPN-------------GEQK 66

Query: 72 DVYDARRVCDTINVSHYVFDYEE 94
          D+ DAR+    +++ +   + ++
Sbjct: 67 DIDDARKTVKLLDIKNITLNIKK 89


>gi|282898163|ref|ZP_06306154.1| conserved hypothetical protein [Raphidiopsis brookii D9]
 gi|281196694|gb|EFA71599.1| conserved hypothetical protein [Raphidiopsis brookii D9]
          Length = 263

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS++VA +     +DV+G      +   A          +++ +A     TI
Sbjct: 5   LIAYSGGVDSTLVAKVA----HDVLG------DRAVAVTAVSPSLLPEELTEASAQAATI 54

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            ++H +                       T  P   C  C   +    L  +  + G   
Sbjct: 55  GITHKIV------------HTQEMANPNYTSNPVNRCYFCKSEL-HDTLKPLALEWGYSY 101

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKE 198
           +  G                       D  +D   +       +    R PL +  + K 
Sbjct: 102 VIDGVNA--------------------DDLKD---YRPGIQAAKERGARSPLAEIGITKM 138

Query: 199 SVRDLAREMGLDIADKS 215
            VR L++++ L   DK 
Sbjct: 139 EVRQLSQQLALPWWDKP 155


>gi|182625513|ref|ZP_02953284.1| GMP synthase [Clostridium perfringens D str. JGS1721]
 gi|177909201|gb|EDT71666.1| GMP synthase [Clostridium perfringens D str. JGS1721]
          Length = 509

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +++ A+SGGVDSSV A ++ +  G  +  +     +     K +G             
Sbjct: 214 DKKLICALSGGVDSSVAAVMVHKAVGKQLTCIF---VDHGLLRKDEGDQVEKIFK----- 265

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
             +  +++    + ++RF   +                 +     ++         +LG 
Sbjct: 266 --EGFDMNLIRVNAQDRFLGKLKGVSDPETKRK------IIGEEFIRV--FEEEAGKLGD 315

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        V + G     + +           +    +     L  PL ++ K
Sbjct: 316 IKFLVQG---TIYPDVVESGTDTSAVIKSHHN-------VGGLPEDMEFSLIEPLRELFK 365

Query: 198 ESVRDLAREMGLD 210
           + VR +  E+G+ 
Sbjct: 366 DEVRAVGEELGIP 378


>gi|159029205|emb|CAO87565.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 269

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + ++A SGGVDS++VA +     YD++G          A          +++ +A    D
Sbjct: 21  KALIAYSGGVDSTLVAKVA----YDLLG------GQALAITAVSPSLLPEELQEAIAQAD 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I + H + + EE                  T  P   C    K S+L    + L    L
Sbjct: 71  YIGIRHELVETEE------------MNNPNYTSNPVNRC-YFCK-SELHDTLKPL---AL 113

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
           A G+         DD +  R                      +    R PL +  + K  
Sbjct: 114 ARGYSYVIDGVNADDLRDYRP----------------GIQAARERGARSPLAEIAITKSE 157

Query: 200 VRDLAREMGLDIADKS 215
           VR L+R + L   DK 
Sbjct: 158 VRQLSRYLNLPWWDKP 173


>gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
 gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
          Length = 514

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 40/222 (18%)

Query: 24  VVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+A+SGG DS V  A L+KR G +  GV   L              +G D+   + + + 
Sbjct: 27  VLAVSGGGDS-VALAHLVKRAGRE--GVVAHL-------DHALRPESGGDLLFVKALAER 76

Query: 83  INVSHYVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +    Y           V +   A  +             R ++++ L  V R++ A  +
Sbjct: 77  LGYPFYA--------ERVEVARVAREWREN-----LEAVAREIRYAFLHRVAREVKAKAI 123

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            T H +        D +   ++ + +     Q        +++   +  PL   ++E +R
Sbjct: 124 LTAHTL--------DDQAETVLLKLL-----QGTARGLGIREKEGLVVRPLLAFRREELR 170

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
              + +G    +   +QD+   +   Y  +           G
Sbjct: 171 AYLKALGEAWREDPSNQDL--SRDRNYLRLKVLPLVEERFPG 210


>gi|159039742|ref|YP_001538995.1| GMP synthase [Salinispora arenicola CNS-205]
 gi|157918577|gb|ABW00005.1| GMP synthase, large subunit [Salinispora arenicola CNS-205]
          Length = 517

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V AAL+ R  G  +  V     +       +              V  
Sbjct: 220 VICGLSGGVDSAVAAALVHRAVGDQLTCVF---VDHGLLRAGEAEQVEKDY------VAA 270

Query: 82  TINVSHYVFDYEERF 96
           T  +   V D  +RF
Sbjct: 271 T-GIRLKVVDSADRF 284


>gi|194366887|ref|YP_002029497.1| exsB protein [Stenotrophomonas maltophilia R551-3]
 gi|254764386|sp|B4ST23|QUEC_STRM5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|194349691|gb|ACF52814.1| exsB protein [Stenotrophomonas maltophilia R551-3]
          Length = 221

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V A+ +  G+ V  +          S R G      ++  A RV 
Sbjct: 2  KKAVVLLSGGMDSAAVIAMAQEQGFAVHAL----------SVRYGQ-RHTSELDAAARVA 50

Query: 81 DTIN-VSHYVFD 91
               ++H   D
Sbjct: 51 KAQGVIAHKTVD 62


>gi|332173071|gb|AEE22325.1| exsB protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 218

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V  +  +DGY+V  ++   Y  R            +++  A R C
Sbjct: 3  QKVVVIFSGGMDSFTVLNMAVKDGYEVHALSF-NYGQR----------HSKELDYASRAC 51

Query: 81 DTINVSHYVFDYE 93
            + V+H + D  
Sbjct: 52 KILGVAHKIIDIS 64


>gi|302685329|ref|XP_003032345.1| hypothetical protein SCHCODRAFT_76806 [Schizophyllum commune H4-8]
 gi|300106038|gb|EFI97442.1| hypothetical protein SCHCODRAFT_76806 [Schizophyllum commune H4-8]
          Length = 538

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYD 75
           PK  RV+ A+SGGVDS+V A L+       IG      + ++      +G         D
Sbjct: 225 PKG-RVIGAVSGGVDSTVAAKLMHEA----IGDRFHAIMVDNGVLRLNEGKQVHEMLNRD 279

Query: 76  ARRVCDTINVSHYVFDYEERF 96
                  + V+  V D  + F
Sbjct: 280 -------LGVNLKVVDASDLF 293


>gi|15642240|ref|NP_231873.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153820829|ref|ZP_01973496.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229512122|ref|ZP_04401601.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229519257|ref|ZP_04408700.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9]
 gi|229607187|ref|YP_002877835.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236]
 gi|254849373|ref|ZP_05238723.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10]
 gi|255747060|ref|ZP_05421005.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101]
 gi|262161395|ref|ZP_06030505.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1]
 gi|61217424|sp|Q9KPX0|TILS_VIBCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
          Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
          Full=tRNA(Ile)-lysidine synthetase
 gi|9656802|gb|AAF95386.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126521621|gb|EAZ78844.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229343946|gb|EEO08921.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9]
 gi|229352087|gb|EEO17028.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229369842|gb|ACQ60265.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236]
 gi|254845078|gb|EET23492.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10]
 gi|255735462|gb|EET90862.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101]
 gi|262028706|gb|EEY47360.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1]
          Length = 440

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSQVLLALLARGRDEFGWDVTAVHVHHGLSPNADQWAQYC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|313105863|ref|ZP_07792126.1| hypothetical protein PA39016_000110160 [Pseudomonas aeruginosa
          39016]
 gi|310878628|gb|EFQ37222.1| hypothetical protein PA39016_000110160 [Pseudomonas aeruginosa
          39016]
          Length = 224

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+ +SGG+DS+ V A+ K DGY     T+        S   G     + +  A RV
Sbjct: 3  QKKAVILLSGGLDSATVVAMAKADGYAC--YTM--------SFDYGQRHRAE-LQAAERV 51

Query: 80 CDTIN-VSHYVF 90
             +  + H V 
Sbjct: 52 ARQLGVIEHKVI 63


>gi|110597996|ref|ZP_01386277.1| ExsB [Chlorobium ferrooxidans DSM 13031]
 gi|110340445|gb|EAT58934.1| ExsB [Chlorobium ferrooxidans DSM 13031]
          Length = 226

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR VV +SGG+DS V  A+    G+++  +              G     +++   R +C
Sbjct: 1  MRAVVLLSGGMDSLVTTAMAHEHGFELAAMH----------VNYGQRTWHKELASFRDIC 50

Query: 81 DTINV 85
          +  N+
Sbjct: 51 NHYNI 55


>gi|115497124|ref|NP_001069121.1| asparagine synthetase [glutamine-hydrolyzing] [Bos taurus]
 gi|119361252|sp|Q1LZA3|ASNS_BOVIN RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|94534952|gb|AAI16124.1| Asparagine synthetase [Bos taurus]
 gi|296488677|gb|DAA30790.1| asparagine synthetase [Bos taurus]
          Length = 561

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           AR+V + I   H+   +       V+     S    +
Sbjct: 299 ARKVANHIGSEHHEVLFNSEEGIQVLDEVIFSLETYD 335


>gi|15596173|ref|NP_249667.1| hypothetical protein PA0976 [Pseudomonas aeruginosa PAO1]
 gi|107100432|ref|ZP_01364350.1| hypothetical protein PaerPA_01001457 [Pseudomonas aeruginosa
          PACS2]
 gi|116048901|ref|YP_792298.1| hypothetical protein PA14_51670 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218893053|ref|YP_002441922.1| hypothetical protein PLES_43381 [Pseudomonas aeruginosa LESB58]
 gi|254245259|ref|ZP_04938581.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296390665|ref|ZP_06880140.1| hypothetical protein PaerPAb_21028 [Pseudomonas aeruginosa PAb1]
 gi|81541661|sp|Q9I4Z2|QUEC_PSEAE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|122258008|sp|Q02ID8|QUEC_PSEAB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764368|sp|B7UXV6|QUEC_PSEA8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|9946884|gb|AAG04365.1|AE004531_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|32454317|gb|AAP82946.1| conserved hypothetical protein [Pseudomonas aeruginosa PA14]
 gi|115584122|gb|ABJ10137.1| conserved hypothetical protein [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126198637|gb|EAZ62700.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773281|emb|CAW29093.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 224

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+ +SGG+DS+ V A+ K DGY     T+        S   G     + +  A RV
Sbjct: 3  QKKAVILLSGGLDSATVVAMAKADGYAC--YTM--------SFDYGQRHRAE-LQAAERV 51

Query: 80 CDTIN-VSHYVF 90
             +  + H V 
Sbjct: 52 ARQLGVIEHKVI 63


>gi|302871264|ref|YP_003839900.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574123|gb|ADL41914.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 456

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV---VAALLKRDGY--DVIGVTLQLY 55
           M + E  + N        K  +V++  SGGVDS V       LK + Y  D+    L   
Sbjct: 1   MSLMEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCMYRLKDE-YSLDITVAHLNHM 59

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGET 113
              +A           D      +C   N+       D  +  +        S   AG +
Sbjct: 60  LRPEADD---------DEKFVIEMCKRYNIKCITRKVDVAKLKKEK----GLSEEEAGRS 106

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                      ++S    + +++  D +  GH
Sbjct: 107 A----------RYSFFYEIAKEISIDRIFLGH 128


>gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
 gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
 gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 480

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             D  +VV +SGG DS  +   L     +     L++  +      +G     +D+   +
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQ---LKIVVAHVDHMFRGDESH-EDLRFVQ 79

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C+ + +                    S Y         V   R  +++ L  + ++  
Sbjct: 80  GLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLERIMKKYD 127

Query: 138 ADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A  +A GH+       GDD        + R     +  +             L  PL  +
Sbjct: 128 ARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYLIRPLLGV 178

Query: 196 KKESVRDLAREMGL 209
            KE + D   ++ L
Sbjct: 179 TKEEIVDYCNKLNL 192


>gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
 gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
          Length = 476

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             D  +VV +SGG DS  +   L     +     L++  +      +G     +D+   +
Sbjct: 20  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQ---LKIVVAHVDHMFRGDESH-EDLRFVQ 75

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C+ + +                    S Y         V   R  +++ L  + ++  
Sbjct: 76  GLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLERIMKKYD 123

Query: 138 ADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A  +A GH+       GDD        + R     +  +             L  PL  +
Sbjct: 124 ARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYLIRPLLGV 174

Query: 196 KKESVRDLAREMGL 209
            KE + D   ++ L
Sbjct: 175 TKEEIVDYCNKLNL 188


>gi|119487253|ref|ZP_01621004.1| hypothetical protein L8106_21052 [Lyngbya sp. PCC 8106]
 gi|119455808|gb|EAW36943.1| hypothetical protein L8106_21052 [Lyngbya sp. PCC 8106]
          Length = 229

 Score = 46.3 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V+ +SGG+DSS V    K +GY+   +                    +++  A+++ 
Sbjct: 1  MKAVILLSGGLDSSTVLYQAKAEGYECYAI-----------SFDYQQRHQRELASAQQIA 49

Query: 81 DTIN-VSHYVFDY 92
           +   V H V  +
Sbjct: 50 QSAGVVEHQVVKF 62


>gi|238578303|ref|XP_002388673.1| hypothetical protein MPER_12279 [Moniliophthora perniciosa FA553]
 gi|215450165|gb|EEB89603.1| hypothetical protein MPER_12279 [Moniliophthora perniciosa FA553]
          Length = 409

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 18/83 (21%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           PK  RV+ A+SGGVDS+V A L+       IG                       + +A+
Sbjct: 226 PKG-RVIGAVSGGVDSTVAAKLMHEA----IG---------DRFHAIMVDNGVLRLNEAQ 271

Query: 78  RVCD----TINVSHYVFDYEERF 96
           RV +     + V+  V D  + F
Sbjct: 272 RVYEMLNKDLGVNLTVVDASDLF 294


>gi|317498352|ref|ZP_07956648.1| exsB protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894357|gb|EFV16543.1| exsB protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 221

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + VV  SGG DS+      K+   +VI ++   +N  +   ++  C        A++
Sbjct: 3   KPNKAVVVFSGGQDSTTCLFWAKKKYDEVIALS---FNYGQRHSKELEC--------AKK 51

Query: 79  VCDTINVSHYVFD------YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS- 131
           +C    V H++ D              V +          TP   VD  R + F    + 
Sbjct: 52  ICKEHGVEHHILDMGLLNQLAPNSLTRVDMEVDHEAPEEGTPNSFVD-GRNMLFLTFAAV 110

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q    VL TG           D       CR + +   ++    A   +    +  P
Sbjct: 111 FAKQRDIHVLVTG-------VSQSDFSGYPD-CRHVFISSLETTLTLAMDYEFE--VITP 160

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K+   ++A ++G
Sbjct: 161 LMWIDKKQTWEMADKLG 177


>gi|302770933|ref|XP_002968885.1| hypothetical protein SELMODRAFT_410069 [Selaginella moellendorffii]
 gi|300163390|gb|EFJ30001.1| hypothetical protein SELMODRAFT_410069 [Selaginella moellendorffii]
          Length = 349

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            K  RV +A SGG DS+V+A +L      +D  G+ L L +  +      S      +  
Sbjct: 48  KKGERVAMAASGGKDSTVLAHILSELNTRHD-YGLDLFLLSIDEG----ISGYRDDSLET 102

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +R      +   V  Y+E +     +               C  C    +   L     
Sbjct: 103 VKRNEVQYGIPLKVLSYKELYGWT--MDEIVKEIGR---KNNCTFCGVFRR-QALDRGAA 156

Query: 135 QLGADVLATGHYI 147
            + AD +ATGH  
Sbjct: 157 LMKADKMATGHNA 169


>gi|206889348|ref|YP_002248069.1| ExsB protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741286|gb|ACI20343.1| ExsB protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 224

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V+ +SGG+DSS    + K +G++   +          S   G      ++  A++V 
Sbjct: 2  KKAVILLSGGIDSSTTLIIAKSEGFECYAL----------SFDYGQ-RHKIEIEAAKKVA 50

Query: 81 DTINV-SHYVFDY 92
            I V  H +  +
Sbjct: 51 KHIGVKEHLIVSF 63


>gi|30249408|ref|NP_841478.1| argininosuccinate synthase [Nitrosomonas europaea ATCC 19718]
 gi|34921586|sp|Q82UP5|ASSY_NITEU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|30138771|emb|CAD85348.1| Argininosuccinate synthase [Nitrosomonas europaea ATCC 19718]
          Length = 404

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 26/134 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + V+A SGG+D+SV+   L+   Y    VT                  G+++  AR 
Sbjct: 3   KVKKAVLAFSGGLDTSVILKWLQDT-YQCEVVTF-----------TADIGQGEEIEPARA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                 +   ++ D  E F    + P           Y  G +    +   R V      
Sbjct: 51  KAVQFGIREIFIEDLREEFVRDYVFPMFRANTIYEGEYLLGTSIARPLIAKRQV------ 104

Query: 131 SVTRQLGADVLATG 144
            + +Q GAD ++ G
Sbjct: 105 EIAQQTGADAVSHG 118


>gi|303326374|ref|ZP_07356817.1| ThiI family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864290|gb|EFL87221.1| ThiI family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 386

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 47/168 (27%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-----R 77
           V+V  SGG+DS + A LL+  G  V  +                C +     +A     R
Sbjct: 28  VIVLFSGGLDSILAAKLLEDQGLKVRCLH---------------CVSPFFGDEAALPRWR 72

Query: 78  RVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
           R+   ++++      D+    R   +  F      G+   PCVDC        LL   R 
Sbjct: 73  RL-HNLDIASLDVSEDFAALLRRRPVHGF------GKVMNPCVDCKI-----LLLRHARL 120

Query: 135 ---QLGADVLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLE 170
               +GA +LA+G  +  R              D     ++ RP+   
Sbjct: 121 YMEAVGARLLASGEVLGQRPMSQRRDTLHVIPRDADVTGLLLRPLCAR 168


>gi|291561059|emb|CBL39859.1| preQ(0) biosynthesis protein QueC [butyrate-producing bacterium
           SSC/2]
          Length = 221

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + VV  SGG DS+      K+   +VI ++   +N  +   ++  C        A++
Sbjct: 3   KPNKAVVVFSGGQDSTTCLFWAKKKYDEVIALS---FNYGQRHSKELEC--------AKK 51

Query: 79  VCDTINVSHYVFD------YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS- 131
           +C    V H++ D              V +          TP   VD  R + F    + 
Sbjct: 52  ICKEHGVEHHILDMGLLNQLAPNSLTRVDMEVDHEAPEEGTPNSFVD-GRNMLFLTFAAV 110

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q    VL TG           D       CR + +   ++    A   +    +  P
Sbjct: 111 FAKQRDIHVLVTG-------VSQSDFSGYPD-CRHVFISSLETTLTLAMDYEFE--VITP 160

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K+   ++A ++G
Sbjct: 161 LMWIDKKQTWEMADKLG 177


>gi|49081904|gb|AAT50352.1| PA0976 [synthetic construct]
          Length = 225

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+ +SGG+DS+ V A+ K DGY     T+        S   G     + +  A RV
Sbjct: 3  QKKAVILLSGGLDSATVVAMAKADGYAC--YTM--------SFDYGQRHRAE-LQAAERV 51

Query: 80 CDTIN-VSHYVF 90
             +  + H V 
Sbjct: 52 ARQLGVIEHKVI 63


>gi|52425943|ref|YP_089080.1| NadE protein [Mannheimia succiniciproducens MBEL55E]
 gi|81691323|sp|Q65RB5|NADE_MANSM RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|52307995|gb|AAU38495.1| NadE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 250

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           + +SGG+DS+V A L  R G  V  + L                +  DV DA+   ++  
Sbjct: 29  LGVSGGIDSAVCAHLAARTGAPVQALIL-----------PAEVTSPSDVADAQATLESAG 77

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +   +          +I+   S     E P         +K  +L++  R +     A  
Sbjct: 78  IDGQIISIAP--WYDLIMQQLSPVLNSE-PERV----NVLK-GNLMARLRMIALFTTAQS 129

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           H                   +  D   D                  PL  ++KE V +L 
Sbjct: 130 HRSIVLGTDNAAEWLTGYFTKFGDGAAD----------------VLPLAGLRKEQVFELG 173

Query: 205 REMGLD--IADKSDSQDI 220
           R +G+   + DK  S  +
Sbjct: 174 RYLGVPQSVLDKKPSAGL 191


>gi|146278683|ref|YP_001168842.1| argininosuccinate synthase [Rhodobacter sphaeroides ATCC 17025]
 gi|166221013|sp|A4WVX3|ASSY_RHOS5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145556924|gb|ABP71537.1| argininosuccinate synthase [Rhodobacter sphaeroides ATCC 17025]
          Length = 408

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR 
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARE 50

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
               + +     ++ D  E F    + P   + A  E          R +    L+ +  
Sbjct: 51  KAVMLGIKPDNIFIEDVREEFVRDFVFPMFRANALYEGLYLLGTSIARPLIAKRLVEIAA 110

Query: 135 QLGADVLATG 144
             GAD +A G
Sbjct: 111 MTGADAVAHG 120


>gi|194333515|ref|YP_002015375.1| exsB protein [Prosthecochloris aestuarii DSM 271]
 gi|254764366|sp|B4S6H3|QUEC_PROA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|194311333|gb|ACF45728.1| exsB protein [Prosthecochloris aestuarii DSM 271]
          Length = 226

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR VV +SGG+DS V  A     GY++  +              G     +++   R +C
Sbjct: 1  MRAVVLLSGGMDSLVATAEADALGYELAAMH----------VNYGQRTWHKELMAFRAIC 50

Query: 81 DTINVSH 87
          D   + H
Sbjct: 51 DHYGIRH 57


>gi|311895757|dbj|BAJ28165.1| putative glutamine-dependent NAD(+) synthetase [Kitasatospora setae
           KM-6054]
          Length = 581

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 17  NPKDMR-VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
               MR V++ +SGG+DS++VAA+     G + V GV++                +    
Sbjct: 319 RKNGMRSVLIGLSGGIDSALVAAIAVDAIGAENVYGVSM-----------PSRYSSQHSR 367

Query: 74  YDARRVCDTINVSHYVFDYEERF 96
            DA  +     +          F
Sbjct: 368 DDAAELARRTGLHFRTVSIAPMF 390


>gi|254173902|ref|ZP_04880573.1| N-type ATP pyrophosphatase [Thermococcus sp. AM4]
 gi|214032151|gb|EEB72982.1| N-type ATP pyrophosphatase [Thermococcus sp. AM4]
          Length = 245

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          RL   + ++ P  ++V VA S G DS+    +L+  G+DV+ +T +L
Sbjct: 43 RLEGREFERRPTGVKVAVAFSAGSDSTATLKILRWAGFDVVPITAKL 89


>gi|254239324|ref|ZP_04932647.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126171255|gb|EAZ56766.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 224

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+ +SGG+DS+ V A+ K DGY     T+        S   G     + +  A RV
Sbjct: 3  QKKAVILLSGGLDSATVVAMAKADGYAC--YTM--------SFDYGQRHRAE-LQAAERV 51

Query: 80 CDTIN-VSHYVF 90
             +  + H V 
Sbjct: 52 ARQLGVIEHKVI 63


>gi|307946670|ref|ZP_07662005.1| NAD(+) synthase (glutamine-hydrolyzing) [Roseibium sp. TrichSKD4]
 gi|307770334|gb|EFO29560.1| NAD(+) synthase (glutamine-hydrolyzing) [Roseibium sp. TrichSKD4]
          Length = 555

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 11/73 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++ AA+     G D +   +                + + + DA     
Sbjct: 290 VVLGLSGGIDSAICAAMAVDALGADKVHAIM----------LPYRYTSEESIKDAAECAA 339

Query: 82  TINVSHYVFDYEE 94
            + + +     EE
Sbjct: 340 ALGIRYDTVPIEE 352


>gi|239986244|ref|ZP_04706908.1| succinoglycan biosynthesis regulator [Streptomyces roseosporus NRRL
           11379]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 40/214 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+  +SGG+DS V+A  L  +G++V      L +     +        ++   AR   D
Sbjct: 3   RVIAIVSGGLDSVVLAHHLHAEGHEV-----HLLSIDYGQR------HRKEHDYARIAAD 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGET--PLPC----------VDCNRTVK-FSD 128
            I   H + D         +      Y+  ++   +P           V  NR V   S 
Sbjct: 52  RIGAEHEIVDLSN------VASMLPGYSLTDSQVDVPDQHYTAPGSVNVVPNRNVILLSV 105

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                  + AD +A G          D           M+      Y            +
Sbjct: 106 AYGKAAAVKADQVAIGALAGDASTAPDCSAEFISSFNAMEKIACAGYAPAHLE------V 159

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
             P  D+ K  V  L  ++G+D  +       CF
Sbjct: 160 VAPFIDLHKHDVIRLGEKLGVDWTE----TWSCF 189


>gi|229160392|ref|ZP_04288390.1| hypothetical protein bcere0009_11860 [Bacillus cereus R309803]
 gi|228623116|gb|EEK79944.1| hypothetical protein bcere0009_11860 [Bacillus cereus R309803]
          Length = 223

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AADIAKELGIKHTVLDMS 68


>gi|167768060|ref|ZP_02440113.1| hypothetical protein CLOSS21_02604 [Clostridium sp. SS2/1]
 gi|167710389|gb|EDS20968.1| hypothetical protein CLOSS21_02604 [Clostridium sp. SS2/1]
          Length = 221

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + VV  SGG DS+      K+   +VI ++   +N  +   ++  C        A++
Sbjct: 3   KPNKAVVVFSGGQDSTTCLFWAKKKYDEVIALS---FNYGQRHSKELEC--------AKK 51

Query: 79  VCDTINVSHYVFD------YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS- 131
           +C    V H++ D              V +          TP   VD  R + F    + 
Sbjct: 52  ICKEHGVEHHILDMGLLNQLAPNSLTRVDMEVDHEAPEEGTPNSFVD-GRNMLFLTFAAV 110

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q    VL TG           D       CR + +   ++    A   +    +  P
Sbjct: 111 FAKQRDIHVLVTG-------VSQSDFSGYPD-CRHVFISSLETTLTLAMDYEFE--VITP 160

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K+   ++A ++G
Sbjct: 161 LMWIDKKQTWEMADKLG 177


>gi|124026722|ref|YP_001015837.1| PP family ATPase [Prochlorococcus marinus str. NATL1A]
 gi|123961790|gb|ABM76573.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. NATL1A]
          Length = 280

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 53/199 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V VA SGGVDSS+VA +     G   + V GV                  A   +  AR 
Sbjct: 30  VCVAFSGGVDSSLVATIAHEQLGSKAFAVTGV--------------SPSLAPYLLKQARL 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I + H     EE   N +  P   +Y        C  C + +  + L  ++++   
Sbjct: 76  QADWIGIHH-----EECQTNEINQP---NYFK-NPDNRCFACKQEL-HTHLTEISKKFHN 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-- 196
             +  G          DD        RP     +Q              +  PL +++  
Sbjct: 126 AQVLDG-------VNYDDLHDY----RPGIQASNQ------------AGVISPLAELEID 162

Query: 197 KESVRDLAREMGLDIADKS 215
           K+S+R +++ +GL   DK 
Sbjct: 163 KKSIRSISKSLGLPWWDKP 181


>gi|72382981|ref|YP_292336.1| hypothetical protein PMN2A_1143 [Prochlorococcus marinus str.
           NATL2A]
 gi|72002831|gb|AAZ58633.1| Conserved hypothetical protein 268 [Prochlorococcus marinus str.
           NATL2A]
          Length = 280

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 53/199 (26%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-G---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V VA SGGVDSS+VA +     G   + V GV                  A   +  AR 
Sbjct: 30  VCVAFSGGVDSSLVATIAHEQLGSKAFAVTGV--------------SPSLAPYLLKQARL 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             D I + H     EE   N +  P   +Y        C  C + +  + L  ++++   
Sbjct: 76  QADWIGIHH-----EECQTNEINQP---NYFK-NPDNRCFACKQEL-HTHLTEISKKFHN 125

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-- 196
             +  G          DD        RP     +Q              +  PL +++  
Sbjct: 126 AQVLDG-------VNYDDLHDY----RPGIQASNQ------------AGVISPLAELEID 162

Query: 197 KESVRDLAREMGLDIADKS 215
           K+S+R +++ +GL   DK 
Sbjct: 163 KKSIRSISKSLGLPWWDKP 181


>gi|20093670|ref|NP_613517.1| RNA methylase [Methanopyrus kandleri AV19]
 gi|19886549|gb|AAM01447.1| Predicted RNA methylase [Methanopyrus kandleri AV19]
          Length = 207

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 34/196 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY---DAR 77
           MR+VV  SGG DS + A +   + YD   + L  Y++      + +      V    DA 
Sbjct: 1   MRMVVLFSGGPDSLLAALIACDE-YDPEKIILATYDNGVLIGVEKAGINYSQVKRATDAE 59

Query: 78  RVCDTINV--SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 ++    + +      R   I+ F           P        KF  L     +
Sbjct: 60  VEWRIFDIHGPFHRWGLRGLERR--ILRFGW--------NPVCL---DCKFCMLFHALEK 106

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           L  DV+ TG     +        +       M  E    YF              PL D 
Sbjct: 107 LEPDVIVTGDRESRKYPEQTPEAKAFWEE--MCGEYGCEYFT-------------PLWDW 151

Query: 196 KKESVRDLAREMGLDI 211
           KK  V +      + +
Sbjct: 152 KKRGVYEELARRRVSV 167


>gi|85703661|ref|ZP_01034765.1| NAD(+) synthase [Roseovarius sp. 217]
 gi|85672589|gb|EAQ27446.1| NAD(+) synthase [Roseovarius sp. 217]
          Length = 555

 Score = 46.3 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V++ +SGGVDS++VA +      D +G   +            S    + + DA+ V +
Sbjct: 286 KVLLGLSGGVDSAIVATIAV----DAVGA--KNVRCVMLPSEFTS---PESLEDAKAVAE 336

Query: 82  TINVSHYVF 90
            +   +   
Sbjct: 337 NLGCRYDFV 345


>gi|330834163|ref|YP_004408891.1| argininosuccinate synthase [Metallosphaera cuprina Ar-4]
 gi|329566302|gb|AEB94407.1| argininosuccinate synthase [Metallosphaera cuprina Ar-4]
          Length = 393

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 38/201 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            M++V+A SGG+D++V    LK     +V+ V      S    + +      +  Y A  
Sbjct: 2   KMKIVLAYSGGLDTTVAIRWLKETYNAEVVSV------SVDVGQLEDFKKIEERAYLAGS 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           V       HY+ D +  F     +         E   P      R +    ++ V R+ G
Sbjct: 56  V------KHYLIDAKNEFAERFAITDVIMNGLYEEVYPLATALARPLIAEKVVEVARKEG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF-LFATTQQQLCDLRFP--LGD 194
            + +A G                           DQ  F L   T  +   +  P  +  
Sbjct: 110 TEYVAHG---------------------STSKGNDQVRFDLALKTNLENVKIIAPARIWK 148

Query: 195 MKKESVRDLAREMGLDIADKS 215
           M +E     ARE G+ I  +S
Sbjct: 149 MTREDEILFARERGIPIKTES 169


>gi|297158199|gb|ADI07911.1| GMP synthase [Streptomyces bingchenggensis BCW-1]
          Length = 528

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AAL++R  G  +  V     +     K +              V
Sbjct: 224 KRAICGLSGGVDSAVAAALVQRAIGDQLTCVY---VDHGLMRKGESEQVEKDF------V 274

Query: 80  CDTINVSHYVFDYEERF 96
             T  V   V D EERF
Sbjct: 275 AAT-GVQLKVVDAEERF 290


>gi|90077290|dbj|BAE88325.1| unnamed protein product [Macaca fascicularis]
          Length = 561

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVI----------------VPFASSYAAGETPL 115
           AR+V + I   HY   +         + VI                +   S Y    T  
Sbjct: 299 ARKVANHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDN 358

Query: 116 PCVDCNR 122
             +    
Sbjct: 359 VVIFSGE 365


>gi|90076758|dbj|BAE88059.1| unnamed protein product [Macaca fascicularis]
          Length = 422

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 111 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 159

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVI----------------VPFASSYAAGETPL 115
           AR+V + I   HY   +         + VI                +   S Y    T  
Sbjct: 160 ARKVANHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDN 219

Query: 116 PCVDCNR 122
             +    
Sbjct: 220 VVIFSGE 226


>gi|116074261|ref|ZP_01471523.1| Argininosuccinate synthase [Synechococcus sp. RS9916]
 gi|116069566|gb|EAU75318.1| Argininosuccinate synthase [Synechococcus sp. RS9916]
          Length = 401

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRL 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALEAGASQSLVGDLIEPFIQEFAFPAIRANALYEGRYPLSTALARPLIARRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|109067397|ref|XP_001089064.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] isoform 3
           [Macaca mulatta]
 gi|109067399|ref|XP_001089182.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] isoform 4
           [Macaca mulatta]
 gi|109067403|ref|XP_001089407.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] isoform 6
           [Macaca mulatta]
          Length = 561

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVI----------------VPFASSYAAGETPL 115
           AR+V + I   HY   +         + VI                +   S Y    T  
Sbjct: 299 ARKVANHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDN 358

Query: 116 PCVDCNR 122
             +    
Sbjct: 359 VVIFSGE 365


>gi|109067407|ref|XP_001088720.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] isoform 1
           [Macaca mulatta]
 gi|297288834|ref|XP_002803422.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Macaca
           mulatta]
          Length = 478

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 167 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 215

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVI----------------VPFASSYAAGETPL 115
           AR+V + I   HY   +         + VI                +   S Y    T  
Sbjct: 216 ARKVANHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDN 275

Query: 116 PCVDCNR 122
             +    
Sbjct: 276 VVIFSGE 282


>gi|322703533|gb|EFY95140.1| argininosuccinate synthase [Metarhizium anisopliae ARSEF 23]
          Length = 371

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L + GY V+                G     +D      
Sbjct: 2   SKGRVCLAYSGGLDTSTILVWLLQQGYQVVC-------------YLGDVGQDEDFAAVEA 48

Query: 79  VCDTINVS-HYVFDYEERFRNAVIVP-------FASSYAAGETPLPCVDCNRTVKFSDLL 130
               +        + +    + V+         F   Y  G          R +    ++
Sbjct: 49  KALKLGAEAFVCENLQRELVDDVVSRAIMCNAIFEDQYLLG------TALARPIIARSMI 102

Query: 131 SVTRQLGADVLATG 144
            V  +     L+ G
Sbjct: 103 RVAEKHNCAYLSHG 116


>gi|317473659|ref|ZP_07932948.1| ExsB protein [Anaerostipes sp. 3_2_56FAA]
 gi|316898949|gb|EFV20974.1| ExsB protein [Anaerostipes sp. 3_2_56FAA]
          Length = 181

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+      K+   +VI ++   ++  +    +  C        A+ 
Sbjct: 3  KPTKAVVVFSGGQDSTTCLFWAKKKYEEVIALS---FDYGQKHSDELIC--------AKE 51

Query: 79 VCDTINVSHYVFDYE 93
          +C    V HY+ D  
Sbjct: 52 ICKKYGVEHYILDMA 66


>gi|256820688|ref|YP_003141967.1| GMP synthase [Capnocytophaga ochracea DSM 7271]
 gi|256582271|gb|ACU93406.1| GMP synthase, large subunit [Capnocytophaga ochracea DSM 7271]
          Length = 515

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASK 62
                +    L     + +V++ +SGGVDS+V A LL +  G  +  + +          
Sbjct: 203 DNFVEMTVAQLKAQVGNEKVILGLSGGVDSTVAAVLLNKAIGKQLHCIFVNN-------- 254

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                    +  +  +  + + ++    D   RF  A          AG+T     +  R
Sbjct: 255 ---GLLRKNEFENVLKQYEGMGLNVKGVDASARFLTA---------LAGKT---DPEEKR 299

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
            +     + V     A  +    ++        D      +  P    +   + +     
Sbjct: 300 KIIGRVFIEVFDD-EAHKITDAQWLAQGTIY-PDVIESLSVKGPSATIKSH-HNVGGLPD 356

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD 210
                +  PL  + K+ VR + R +G+ 
Sbjct: 357 YMKLKVVEPLRMLFKDEVRRVGRSLGIS 384


>gi|116252733|ref|YP_768571.1| argininosuccinate synthase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|119361253|sp|Q1MEZ8|ASSY1_RHIL3 RecName: Full=Argininosuccinate synthase 1; AltName:
           Full=Citrulline--aspartate ligase 1
 gi|115257381|emb|CAK08476.1| putative argininosuccinate synthase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 403

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V++ SGG+D+S++   L+   G +V+  T                  G+++  AR   
Sbjct: 6   KIVLSYSGGLDTSIILKWLQETYGCEVVTFT-------------ADLGQGEELEPARAKA 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
           +   V    + D  E F +  + P   + A  E          R +    L+ + R++GA
Sbjct: 53  EMSGVKDIRIVDLREEFVSDFVFPMLRANALYEGQYLLGSSIARPLIAKHLVGIAREVGA 112

Query: 139 DVLATG 144
           D +A G
Sbjct: 113 DAVAHG 118


>gi|152985628|ref|YP_001349881.1| hypothetical protein PSPA7_4532 [Pseudomonas aeruginosa PA7]
 gi|189038934|sp|A6V9Z6|QUEC_PSEA7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|150960786|gb|ABR82811.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 224

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+ +SGG+DS+ V A+ K DGY     T+        S   G     + +  A RV
Sbjct: 3  QKKAVILLSGGLDSATVVAMAKADGYAC--YTM--------SFDYGQRHRAE-LQAAERV 51

Query: 80 CDTIN-VSHYVF 90
             +  + H V 
Sbjct: 52 ARQLGAIEHKVI 63


>gi|85860086|ref|YP_462288.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
 gi|110816269|sp|Q2LVL3|QUEC_SYNAS RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|85723177|gb|ABC78120.1| queuosine biosynthesis protein [Syntrophus aciditrophicus SB]
          Length = 231

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          +PK  + VV +SGG+DS+   A+ K + Y++  +T Q                  ++  A
Sbjct: 2  SPK-KKAVVLLSGGLDSATTMAIAKAENYELYALTFQY-----------GQRHAVELEAA 49

Query: 77 RRVCDTINVSHY 88
          RR+   +    +
Sbjct: 50 RRIAAALGAKEH 61


>gi|325684233|gb|EGD26408.1| argininosuccinate synthase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 371

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 25/140 (17%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +++DK+ K  ++V+A SGG+D+SV+   LK             YN+ +      +   G 
Sbjct: 1   MNIDKS-KIKKIVLAYSGGLDTSVIIPWLKE-----------NYNNPEIIAVSANVGQGD 48

Query: 72  DVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTV 124
           ++                V + EE + N  ++P          Y  G T        R +
Sbjct: 49  ELEGLEEKAKNSGAAKLVVANLEEEYVNDYLLPCLKADAKYEGYLLG-TANA-----RPL 102

Query: 125 KFSDLLSVTRQLGADVLATG 144
               L  V  + GAD +A G
Sbjct: 103 IAKALAEVAIKEGADAIAHG 122


>gi|322369254|ref|ZP_08043819.1| exsB protein [Haladaptatus paucihalophilus DX253]
 gi|320550986|gb|EFW92635.1| exsB protein [Haladaptatus paucihalophilus DX253]
          Length = 256

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 2  VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +  T  N       P+   V++A SGG+DS+  A   +  GY+     L     ++  
Sbjct: 15 TTASETTANETTDTGRPEKRAVILA-SGGMDSATAAYEARERGYEP--FFLHTSYGQRTE 71

Query: 62 KRKGSCCAGQDVYDARRVCDTIN 84
           ++  C        A+R  D +N
Sbjct: 72 SKEFDC--------AKRQADELN 86


>gi|300811174|ref|ZP_07091685.1| argininosuccinate synthase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|313123551|ref|YP_004033810.1| argininosuccinate synthase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|300497839|gb|EFK32850.1| argininosuccinate synthase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|312280114|gb|ADQ60833.1| Argininosuccinate synthase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 408

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 25/140 (17%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +++DK+ K  ++V+A SGG+D+SV+   LK             YN+ +      +   G 
Sbjct: 1   MNIDKS-KIKKIVLAYSGGLDTSVIIPWLKE-----------NYNNPEIIAVSANVGQGD 48

Query: 72  DVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTV 124
           ++                V + EE + N  ++P          Y  G T        R +
Sbjct: 49  ELEGLEEKAKNSGAAKLVVANLEEEYVNDYLLPCLKADAKYEGYLLG-TANA-----RPL 102

Query: 125 KFSDLLSVTRQLGADVLATG 144
               L  V  + GAD +A G
Sbjct: 103 IAKALAEVAIKEGADAIAHG 122


>gi|109067405|ref|XP_001088946.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] isoform 2
           [Macaca mulatta]
 gi|297288830|ref|XP_002803421.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Macaca
           mulatta]
          Length = 540

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 229 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 277

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVI----------------VPFASSYAAGETPL 115
           AR+V + I   HY   +         + VI                +   S Y    T  
Sbjct: 278 ARKVANHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDN 337

Query: 116 PCVDCNR 122
             +    
Sbjct: 338 VVIFSGE 344


>gi|291443190|ref|ZP_06582580.1| exsB protein [Streptomyces roseosporus NRRL 15998]
 gi|291346137|gb|EFE73041.1| exsB protein [Streptomyces roseosporus NRRL 15998]
          Length = 229

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 40/214 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+  +SGG+DS V+A  L  +G++V      L +     +        ++   AR   D
Sbjct: 9   RVIAIVSGGLDSVVLAHHLHAEGHEV-----HLLSIDYGQR------HRKEHDYARIAAD 57

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGET--PLPC----------VDCNRTVK-FSD 128
            I   H + D         +      Y+  ++   +P           V  NR V   S 
Sbjct: 58  RIGAEHEIVDLSN------VASMLPGYSLTDSQVDVPDQHYTAPGSVNVVPNRNVILLSV 111

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                  + AD +A G          D           M+      Y            +
Sbjct: 112 AYGKAAAVKADQVAIGALAGDASTAPDCSAEFISSFNAMEKIACAGYAPAHLE------V 165

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
             P  D+ K  V  L  ++G+D  +       CF
Sbjct: 166 VAPFIDLHKHDVIRLGEKLGVDWTE----TWSCF 195


>gi|195152121|ref|XP_002016985.1| GL22056 [Drosophila persimilis]
 gi|194112042|gb|EDW34085.1| GL22056 [Drosophila persimilis]
          Length = 419

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGG+D+S +   L    Y+VI V                    +D   A +    
Sbjct: 6   VILAYSGGLDTSCILKWLLDQQYNVICV-------------LADVGQKEDFVAAEKKALN 52

Query: 83  IN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           I      V D ++ F    I P           Y  G +   PC+          L+ V 
Sbjct: 53  IGANKVIVVDAKQSFVEDYIWPAIQMGLIYEERYLLGTSLARPCISV-------ALMEVA 105

Query: 134 RQLGADVLATG 144
           RQ  A  LA G
Sbjct: 106 RQYDAKYLAHG 116


>gi|134045270|ref|YP_001096756.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132662895|gb|ABO34541.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 324

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +PKD +++V +SGG DS  +  LL+  R  Y V     Q+Y         G     +   
Sbjct: 73  SPKD-KILVGLSGGKDSLALLHLLEPYRRKYGV-----QIYAVTVDLNINGIRPWTESNK 126

Query: 75  DARRV---CDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDL 129
           + + +   C  +N+ H +          V+      S    G    PC  C+  V+   L
Sbjct: 127 NVKMISEHCKNLNIPHEII----AHDGNVVEMSKILSENTKGIEYSPCFSCSM-VRRHVL 181

Query: 130 LSVTR-QLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
            +  +    +D    +A GH +            +  + + ++  ++
Sbjct: 182 TNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNVIKALEPIKN 228


>gi|88602306|ref|YP_502484.1| asparagine synthase [Methanospirillum hungatei JF-1]
 gi|88187768|gb|ABD40765.1| aspartate-ammonia ligase [Methanospirillum hungatei JF-1]
          Length = 329

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 30/126 (23%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           A+SGGVDS++VAA+ KR    V+G                 C    D+  A  V   +++
Sbjct: 99  ALSGGVDSALVAAIAKRPCL-VVG--------------MEGC---HDIRQATAVAQVLDL 140

Query: 86  SHYVFDYEERFRNA---VIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGADVL 141
             +V         A   V++           P P  V    T+ F       + LG + +
Sbjct: 141 PLHVRTITPEDVAAALPVVISLID------DPNPVDVAIGTTLFFVA--ETAQSLGYERI 192

Query: 142 ATGHYI 147
            TG   
Sbjct: 193 LTGQGA 198


>gi|11499833|ref|NP_071077.1| argininosuccinate synthase [Archaeoglobus fulgidus DSM 4304]
 gi|5915699|sp|O28032|ASSY_ARCFU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|2648273|gb|AAB89005.1| argininosuccinate synthetase (argG) [Archaeoglobus fulgidus DSM
           4304]
          Length = 390

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 35/198 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M+VV++ SGG+D++V   LLK   G+D VI VT+ +         K +   G+   D   
Sbjct: 1   MKVVLSYSGGLDTTVCIPLLKEKYGFDEVITVTVDIGQPEA--DIKQAEERGKKYAD--- 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                   HY  D ++ F +++ +    +    E  +      R +    ++ V ++ GA
Sbjct: 56  -------KHYTIDAKKEFVDSLFM-LIKANGNYEGYVLGTALARPLIAEKVVEVAKKEGA 107

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           + +A G         G+D  R   + R       Q  F      ++L        ++ +E
Sbjct: 108 EAVAHG-----CTGKGNDQLRFENIFR-------QHGFKVIAPVREL--------NLTRE 147

Query: 199 SVRDLAREMGLDIADKSD 216
              + AR+ G+++    +
Sbjct: 148 WEIEYARQHGIEVPATKE 165


>gi|159905116|ref|YP_001548778.1| exsB protein [Methanococcus maripaludis C6]
 gi|254764359|sp|A9A873|QUEC_METM6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|159886609|gb|ABX01546.1| exsB protein [Methanococcus maripaludis C6]
          Length = 233

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 39/205 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG+DS+V + + K + YD+  VT             G     Q++  A+++ 
Sbjct: 1   MKAICVLSGGLDSAVTSLVAKSENYDITTVTF----------NYGQMALNQEIKSAKKIS 50

Query: 81  DTINVSHYVFD--YEERFRNAVIVPFASSYAAGETPLP-----CVDCNRTVKFSDLLSVT 133
           + +N  ++V D  + ++F         S    G  P P                 +    
Sbjct: 51  EILNADNHVIDINFVKKFSK-------SGLNTGNIPEPEKEDLDDFEKSEKTMKAVWVPA 103

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER--DQSY-----FLFATTQQQLC 186
           R +    +A+G         G D ++        +     D +      F  +     L 
Sbjct: 104 RNMIMFSIASG------FAEGIDAEKIFSGLNKEEGVTFPDNTPEFIERFNKSLEYGTLN 157

Query: 187 DLRF--PLGDMKKESVRDLAREMGL 209
            ++   PL  + K  +  L +E+ L
Sbjct: 158 KVKMVAPLYKLNKPEIAKLGKELEL 182


>gi|158317731|ref|YP_001510239.1| GMP synthase [Frankia sp. EAN1pec]
 gi|226739620|sp|A8LAX2|GUAA_FRASN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|158113136|gb|ABW15333.1| GMP synthase, large subunit [Frankia sp. EAN1pec]
          Length = 534

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 67/201 (33%), Gaps = 38/201 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R++  +SGGVDS+V AAL++R     +G TL          R G     +     R  
Sbjct: 230 NGRLICGLSGGVDSAVAAALVQRA----VGDTLTCVFVDHGLLRAGEAEQVE-----RDF 280

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTRQ 135
             +  V        +RF         +S  AG T     +  R +             R+
Sbjct: 281 VASTGVDLVHVKAADRF---------ASALAGVT---DPEQKRKIIGREFIRVFEESARE 328

Query: 136 LGADVLATGHYI------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L A   A G +I           V + G       +           +         DL 
Sbjct: 329 LDARAEAEGTHIGFLVQGTLYPDVIESGSPTAAKIKSHHN-------VGGLPDDLQFDLV 381

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR L  E+GL 
Sbjct: 382 EPLRTLFKDEVRRLGEELGLP 402


>gi|312216218|emb|CBX96169.1| similar to argininosuccinate synthase [Leptosphaeria maculans]
          Length = 415

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              RV +A SGG+D+S +   L  +GY+V+   L      +                  +
Sbjct: 2   SKGRVCLAYSGGLDTSTILKWLIEEGYEVV-CFLANVGQEEPWDE------------VEK 48

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I  +   + D +  F   +              Y  G +    V     ++     
Sbjct: 49  KALKIGALKMVILDLQREFVEELCFRAVQCNASYEGRYLLGTSLARPVIARAQIR----- 103

Query: 131 SVTRQLGADVLATG 144
            V +Q G   ++ G
Sbjct: 104 -VAQQEGCGFVSHG 116


>gi|288869783|ref|ZP_05976300.2| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860221|gb|EFC92519.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 343

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  +    VVA+SGGVDSS    L K  G++   VT+                  Q   +
Sbjct: 136 KESEKTEAVVALSGGVDSSFSLILAKYLGFNPTAVTI---------DPGTIILPNQYKRN 186

Query: 76  ARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
            +++ D +N  H     DY E                G    PC  C++ 
Sbjct: 187 IKKLTDQLNADHEYIKADYSEI---------IRESLNGR-FHPCGRCSKH 226


>gi|198453521|ref|XP_001359229.2| GA12079 [Drosophila pseudoobscura pseudoobscura]
 gi|198132392|gb|EAL28374.2| GA12079 [Drosophila pseudoobscura pseudoobscura]
          Length = 419

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGG+D+S +   L    Y+VI V                    +D   A +    
Sbjct: 6   VILAYSGGLDTSCILKWLLDQQYNVICV-------------LADVGQKEDFAAAEKKALN 52

Query: 83  IN-VSHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           I      V D ++ F    I P           Y  G +   PC+          L+ V 
Sbjct: 53  IGANKVIVVDAKQSFVEDYIWPAIQMGLIYEERYLLGTSLARPCISV-------ALMEVA 105

Query: 134 RQLGADVLATG 144
           R+  A  LA G
Sbjct: 106 RRYDAKYLAHG 116


>gi|315639278|ref|ZP_07894440.1| PP-loop family protein [Campylobacter upsaliensis JV21]
 gi|315480604|gb|EFU71246.1| PP-loop family protein [Campylobacter upsaliensis JV21]
          Length = 249

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RV++ +SGG DS  +A LLKR   +      L       A+   G    G+D      
Sbjct: 25  NDRVLLGLSGGKDSLALAHLLKRMQAHAPFKFEL-----EAATLSYGM---GEDYSKLHA 76

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+   + H V        + +      +     +   C   +R ++   L +   + G 
Sbjct: 77  HCEEHGIKHSVI------ESNIYEISGDTIRENSSF--CSYFSR-MRRGALYTYALEKGF 127

Query: 139 DVLATGHYI 147
           + LA  H++
Sbjct: 128 NKLAIAHHL 136


>gi|14591685|ref|NP_143773.1| hypothetical protein PH1943 [Pyrococcus horikoshii OT3]
 gi|3258387|dbj|BAA31070.1| 243aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 243

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 8  RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          RL   +  +   D ++ VA SGG DSS    +L+  G+DVI +T +L
Sbjct: 44 RLEGKEFPRGKIDFKMAVAYSGGSDSSATVKILRWAGFDVIPITAKL 90


>gi|30172869|sp|Q8GDU2|ASSY_HELMO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|27262410|gb|AAN87486.1| Argininosuccinate synthase [Heliobacillus mobilis]
          Length = 408

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
            +VV+A SGG+D+S++   LK + GY+VI   +    +      +      + +   A +
Sbjct: 9   KKVVLAYSGGLDTSIIIPWLKENYGYEVIA--MA---ADLGQGEELEPLNEKAINTGATK 63

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +        Y+ D +E F    I P           Y  G +    +   R      L+ 
Sbjct: 64  I--------YIEDVKEEFVTEFIWPTLKAGAVYEGKYLLGTSFARPLIAKR------LVE 109

Query: 132 VTRQLGADVLATG 144
           + R+ GA+ +A G
Sbjct: 110 IARKEGAEAIAHG 122


>gi|315655597|ref|ZP_07908495.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 51333]
 gi|315489661|gb|EFU79288.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 51333]
          Length = 410

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 35/200 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + RVV+A SGG+D+SV    +K   G + I V     +       +      Q   D   
Sbjct: 2   NERVVLAYSGGLDTSVAIGWMKDKLGVETIAV-----SVDVGQGGEDMDVIRQRALDCGA 56

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           V        Y+ D ++ F     +P   +    +   P V   +R +    L+   +Q G
Sbjct: 57  V------EAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSALSRPLIAKHLVMAAKQFG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196
           A  +A G                    +  D  R +  F              P+ D+  
Sbjct: 111 ATTMAHG-----------------CTGKGNDQVRFEVSFTSLAPDL---KCVSPIRDLSL 150

Query: 197 KESV-RDLAREMGLDIADKS 215
           +  V    A E  L I    
Sbjct: 151 QRDVSIAYAEEHHLPIETTK 170


>gi|269836239|ref|YP_003318467.1| argininosuccinate synthase [Sphaerobacter thermophilus DSM 20745]
 gi|269785502|gb|ACZ37645.1| argininosuccinate synthase [Sphaerobacter thermophilus DSM 20745]
          Length = 396

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++ VA SGG+DS++   L +   G +V+ +T            +G     +    A   
Sbjct: 2   KKIAVAYSGGLDSTLCIVLAREKYGAEVVPIT--------VDVGQGEGEIAESFAKA--- 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
            D + ++  + D    F    +     + +  E   P      R +  + +     +LG 
Sbjct: 51  -DVLGITPLLIDARAEFAEEWLTRAIRANSDYE-GYPVSTSMTRQLIAAKVAEKALELGC 108

Query: 139 DVLATGHYIR 148
           D +  G   R
Sbjct: 109 DAVMEGSTGR 118


>gi|325063684|gb|ADY67374.1| NH3-dependent NAD+ synthetase [Agrobacterium sp. H13-3]
          Length = 332

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCC 68
          SL  +   + +  V+ +SGG+DSSV AAL     G  +VIG+ +   +S   S R G   
Sbjct: 31 SLRFNLRKRGL--VLGISGGIDSSVCAALAVHALGAANVIGLFMPENDSDPESLRLG--- 85

Query: 69 AGQDVYDARRVCDTINV 85
                  + +   + +
Sbjct: 86 --------QALATKLGM 94


>gi|160936272|ref|ZP_02083645.1| hypothetical protein CLOBOL_01168 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441082|gb|EDP18806.1| hypothetical protein CLOBOL_01168 [Clostridium bolteae ATCC
           BAA-613]
          Length = 424

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK   GY+VI   +   +  + S+  G     +       
Sbjct: 18  KVVLAYSGGLD--TTAIIPWLKEHFGYEVICCCI---DCGQGSELDGLDERAKLSG---- 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLG 137
               +    Y+ D  + F +  I+P   + A  E              +  L+ + R+ G
Sbjct: 69  -ASKL----YIEDLVDDFCDNYIMPCVKANAVYENKYLLGTSMARPAIAKRLVDIARKEG 123

Query: 138 ADVLATG 144
           A  +  G
Sbjct: 124 ASAICHG 130


>gi|282163115|ref|YP_003355500.1| NH(3)-dependent NAD(+) synthetase [Methanocella paludicola SANAE]
 gi|282155429|dbj|BAI60517.1| NH(3)-dependent NAD(+) synthetase [Methanocella paludicola SANAE]
          Length = 323

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          ++ +SGG+DSS VA L     G + V+G+ L         +R  +    +D  D   + +
Sbjct: 38 MIGLSGGLDSSTVAFLCVEALGKEKVMGLIL--------PERDTTPKNTEDGID---LAE 86

Query: 82 TINVSHYVFDYE 93
           + + +   D  
Sbjct: 87 KLGIPYKKIDIS 98


>gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 480

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             D  +VV +SGG DS  +   L     +     L++  +      +G     +D+   +
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQ---LKIVVAHVDHMFRGDESY-EDLQFVQ 79

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C+ + +                    S Y         V   R  +++ L  + ++  
Sbjct: 80  GLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLERIMKKYD 127

Query: 138 ADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           A  +A GH+       GDD        + R     +  +             L  PL  +
Sbjct: 128 ARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYLIRPLLGV 178

Query: 196 KKESVRDLAREMGL 209
            KE + D   ++ L
Sbjct: 179 TKEEIVDYCNKLNL 192


>gi|291297069|ref|YP_003508467.1| argininosuccinate synthase [Meiothermus ruber DSM 1279]
 gi|290472028|gb|ADD29447.1| argininosuccinate synthase [Meiothermus ruber DSM 1279]
          Length = 397

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 55/210 (26%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++V+A SGG+D+S++   L              YN+   +        G++V +ARR  
Sbjct: 1   MKIVLAYSGGLDTSIILKWLIE-----------NYNAEVVT-FTADIGQGEEVEEARRKA 48

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y  D  E F    + P   S       Y  G          R +    L+ +
Sbjct: 49  LQTGASKAYALDLREEFVRDFVFPMMRSGALYEGYYLLG------TSIARPLIAKHLVRI 102

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFATTQQQLCDLR 189
            ++ GA+ +A G                           DQ  F    +A        + 
Sbjct: 103 AQEEGAEAIAHG---------------------ATGKGNDQVRFELTAYALKPDI--KVI 139

Query: 190 FPLGDM---KKESVRDLAREMGLDIADKSD 216
            P  +     +  + + A   G+ +    +
Sbjct: 140 APWREWNLVSRPQMMEYAALHGIPVPTTLE 169


>gi|169347202|ref|ZP_02866141.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens C str. JGS1495]
 gi|169296598|gb|EDS78729.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens C str. JGS1495]
          Length = 385

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         ++ +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELSERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLMVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYETSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|295109785|emb|CBL23738.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus obeum A2-162]
          Length = 383

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 30/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS ++A L +         ++V+ + +                   +   
Sbjct: 143 KIAVCISGGKDSMLMAKLFQELSRHGKKNFEVVFLVM------------NPGYNEINYQT 190

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +     +NV   V      F + +    AS   +     PC  C   ++   L S  ++
Sbjct: 191 IKDNAKILNVPITV------FESDIFNIVASEEQS-----PCYLC-ARMRRGYLYSKAKE 238

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 239 LGCNKIALGHH 249


>gi|269837393|ref|YP_003319621.1| GMP synthase, large subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269786656|gb|ACZ38799.1| GMP synthase, large subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 531

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
             RV++A+SGGVDS+V AAL+ R 
Sbjct: 232 KDRVLLALSGGVDSAVTAALIHRA 255


>gi|168210004|ref|ZP_02635629.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711837|gb|EDT24019.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens B str. ATCC 3626]
          Length = 385

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         ++ +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELSERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLMVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYETSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|71019933|ref|XP_760197.1| hypothetical protein UM04050.1 [Ustilago maydis 521]
 gi|74701087|sp|Q4P763|GUAA_USTMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46099742|gb|EAK84975.1| hypothetical protein UM04050.1 [Ustilago maydis 521]
          Length = 543

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 36/209 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYD 75
           PK   V+ A+SGGVDSSV A L+       IG      + ++      + +        D
Sbjct: 224 PKGQ-VLGAISGGVDSSVAAKLMHEA----IGDRFHAVMVDNGVLRTNEAAQVYEMLSKD 278

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTR 134
                  + V+  V D  E+F + +                 +  N  +  F     V +
Sbjct: 279 -------LGVNLTVVDASEQFLSRLKDVEDPEQKRK------IIGNTFIHVFEA--EVAK 323

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE-------RDQSYF------LFATT 181
                       + +       GK   ++   +  +       +  S        +    
Sbjct: 324 LEKQAEDEEAAALAAGKPQEAKGKFEYLLQGTLYPDVIESISFKGPSATIKTHHNVGGLL 383

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
           +     L  PL ++ K+ VR L + +G+ 
Sbjct: 384 EDMKLKLIEPLRELFKDEVRALGKLLGIP 412


>gi|303242462|ref|ZP_07328943.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589986|gb|EFL59753.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2]
          Length = 237

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 73/258 (28%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDS---------------------SVVAALLKRDGY 45
           TR    D +   +  R+ V +SGG DS                     +V          
Sbjct: 11  TRKAIEDYNMIQEGDRIAVGVSGGKDSLALLVLLKQLQSFFPAKFELEAVT--------- 61

Query: 46  DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFA 105
               +T+                   D+   + +C +I V++ +          VI    
Sbjct: 62  ----LTM--------------GIGEFDLTPVKELCKSIGVNYTI-------EETVIGKIV 96

Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
              A  ET  PC  C   +K   L +V ++L  + +A  H+         D      +  
Sbjct: 97  FE-ARDET-NPCSLC-ANLKRGALHNVAKRLDCNKVALAHH--------RDDVIETFLLS 145

Query: 166 PMDLERDQSYF-LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ 224
            +   + Q++  +    +++L  L  P+  ++++ V++  +   L           C V 
Sbjct: 146 TLYAGKFQTFSPVTYLKRKEL-YLIRPMIYIEEKHVKEYIKANNLVTVPSP-----CHVD 199

Query: 225 QGKYFDVVKRINAGIALE 242
                  +K +   +  E
Sbjct: 200 GKTKRQYIKELLMEMHKE 217


>gi|304315237|ref|YP_003850384.1| transcriptional regulator [Methanothermobacter marburgensis str.
          Marburg]
 gi|302588696|gb|ADL59071.1| predicted transcriptional regulator [Methanothermobacter
          marburgensis str. Marburg]
          Length = 223

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
          +S G+DS+V  ALL  + Y++  +T             G   A  ++  AR++   + + 
Sbjct: 8  LSAGMDSAVATALLASE-YEIHALTF----------DYGQRSAAMEIEHARKLAKHLGIE 56

Query: 87 HYVFDY 92
          H   + 
Sbjct: 57 HTTIEL 62


>gi|260770872|ref|ZP_05879801.1| argininosuccinate synthase [Vibrio furnissii CIP 102972]
 gi|260614109|gb|EEX39299.1| argininosuccinate synthase [Vibrio furnissii CIP 102972]
 gi|315178915|gb|ADT85829.1| argininosuccinate synthase [Vibrio furnissii NCTC 11218]
          Length = 405

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 47/141 (33%), Gaps = 45/141 (31%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVVA SGG+D+SV+   LK             Y+          C     V D  +  D
Sbjct: 8   KVVVAYSGGLDTSVIIPWLKE-----------NYD----------CEVVAFVADVGQGAD 46

Query: 82  TI-NV----------SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRT 123
            +  +            YV D ++      I P           Y  G +    V     
Sbjct: 47  ELVGIEEKAIASGASECYVVDLKDELVKDYIYPTLKTGAYYEGKYLLGTSMARPVIAKAQ 106

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           V       + RQ+GAD LA G
Sbjct: 107 V------EIARQVGADALAHG 121


>gi|238917758|ref|YP_002931275.1| hypothetical protein EUBELI_01839 [Eubacterium eligens ATCC 27750]
 gi|238873118|gb|ACR72828.1| Hypothetical protein EUBELI_01839 [Eubacterium eligens ATCC 27750]
          Length = 412

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 32/144 (22%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASK 62
           LN  DL ++    ++ V +SGG DS ++A L   LKR G   ++++ + +        + 
Sbjct: 144 LNEYDLIQD--GDKIAVCISGGKDSMLMAKLFQELKRHGKNNFELVFLVM--------NP 193

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
              +      + +A+     +++   V      F++ +    A    +     PC  C  
Sbjct: 194 GYNNINYQVILNNAK----ILDIPITV------FKSEIFDTVADIEES-----PCYLC-A 237

Query: 123 TVKFSDLLSVTRQLGADVLATGHY 146
            ++   L S  ++LG + +A GH+
Sbjct: 238 RMRRGYLYSKAKELGCNKIALGHH 261


>gi|168019804|ref|XP_001762434.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686512|gb|EDQ72901.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 348

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  RV VA SGG DS+V+A +L    KR  Y   G+ L L +  +             +
Sbjct: 48  NRGDRVAVAASGGKDSTVLAHVLTLLNKRHDY---GLDLFLLSIDEGIAGY----RDDSL 100

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              +R      +   V  Y+  + N  +               C  C    +   L    
Sbjct: 101 ETVKRNETQYGIPLEVVSYKTLY-NWTMDEIVKEIGL---KNNCTFCGVFRR-QALDRGA 155

Query: 134 RQLGADVLATGHYI 147
            ++ A  +ATGH  
Sbjct: 156 AKMKAVKMATGHNA 169


>gi|116493418|ref|YP_805153.1| PP family ATPase [Pediococcus pentosaceus ATCC 25745]
 gi|116103568|gb|ABJ68711.1| ATP-utilizing enzyme of the PP-loop superfamily [Pediococcus
           pentosaceus ATCC 25745]
          Length = 276

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 48/203 (23%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
              RV +A SGG+DS+    LLK      G D +           A           +  
Sbjct: 17  SKQRVAIAYSGGIDST---YLLKVAVDELGKDNV----------LAMVVNSELFLDDEYN 63

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A  +   +  +       E          A    A  TP       + + +  +     
Sbjct: 64  KALELAKDLGANAMGVSMSEL---------ADERIAANTPESWYYSKQLL-YRTIKKAAA 113

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + G D++  G      + + D+   R  M    +        + +              D
Sbjct: 114 EKGFDIVLDG------MIMDDNADFRPGMKARTEEG-----IVSSLQDA----------D 152

Query: 195 MKKESVRDLAREMGLDIADKSDS 217
           + K  +R+LA++ G+   +K  S
Sbjct: 153 LYKSEIRELAKDRGISNWNKVAS 175


>gi|303390480|ref|XP_003073471.1| putative PP-loop ATPase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302617|gb|ADM12111.1| putative PP-loop ATPase [Encephalitozoon intestinalis ATCC 50506]
          Length = 247

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          M+ +   SGG DS     +L+R+G+ V+G + ++                G +V D    
Sbjct: 1  MKYLALASGGKDSLYAMHVLQREGHQVVGLLHMRC--GDGYQDSFMYQTVGSEVADLLGE 58

Query: 80 CDTINVSHYVFD 91
          C  + +  ++++
Sbjct: 59 C--LGIPIFIYE 68


>gi|262195764|ref|YP_003266973.1| thiamine biosynthesis/tRNA modification protein ThiI [Haliangium
           ochraceum DSM 14365]
 gi|262079111|gb|ACY15080.1| thiamine biosynthesis/tRNA modification protein ThiI [Haliangium
           ochraceum DSM 14365]
          Length = 401

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 73/213 (34%), Gaps = 31/213 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V + +SGG+DS V      R G  V+ V         +    G     + +  A+R+   
Sbjct: 189 VGLLLSGGIDSPVAGWSAMRRGCRVVAVYFH------SFPYTGDKTKKKVLTLAQRLAAW 242

Query: 83  IN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V  +V  + E      +      +A G   L  +   R +       +  +     L
Sbjct: 243 QGSVPVHVVHFTE------VQKALREHAGGRADLGVLMY-RRMMLRAASRLALRDELSAL 295

Query: 142 ATGHYIRS-------RLYVGDDGKRRRIMC------RPMDLERDQ---SYFLFATTQQQL 185
            TG  I          L V +D     ++       +   +ER Q   +Y +     +  
Sbjct: 296 VTGDSIGQVASQTVENLGVVEDAASVPVLRPLLTFDKAEIVERAQQIGTYEVSIQPYEDA 355

Query: 186 CDLRFPLGDMKKESVRDLAR-EMGLDIADKSDS 217
           C L  P     +  VRDL + E GLD+   + S
Sbjct: 356 CALFVPKHPATRARVRDLRKVERGLDLEAMAQS 388


>gi|124024697|ref|YP_001019004.1| argininosuccinate synthase [Prochlorococcus marinus str. MIT 9303]
 gi|166221004|sp|A2CE29|ASSY_PROM3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|123964983|gb|ABM79739.1| Argininosuccinate synthase [Prochlorococcus marinus str. MIT 9303]
          Length = 401

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKHE-----------WGVDEVITFAADLGQGDELDPIRL 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F     +P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALDAGASQSLVGDLIEPFVEEFALPAIRANALYEGRYPLSTALARPLIARRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|110801269|ref|YP_696105.1| thiamine biosynthesis protein ThiI [Clostridium perfringens ATCC
           13124]
 gi|168216800|ref|ZP_02642425.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens NCTC 8239]
 gi|123148743|sp|Q0TQI5|THII_CLOP1 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|110675916|gb|ABG84903.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens ATCC 13124]
 gi|182381029|gb|EDT78508.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens NCTC 8239]
          Length = 385

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         ++ +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELSERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLMVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYETSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|306835323|ref|ZP_07468349.1| GMP synthase [Corynebacterium accolens ATCC 49726]
 gi|304568802|gb|EFM44341.1| GMP synthase [Corynebacterium accolens ATCC 49726]
          Length = 524

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 20/193 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ R +  +SGGVDS+V AAL++R  G  +  V     +       +             
Sbjct: 219 EEGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVETDF----- 270

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D    F   +                 +          L        
Sbjct: 271 -VAST-GAKLVTADERSAFLKKLAGVSDPEEKRKAIGAEFIRSFERAVAGVLADAPAGST 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +         +L  PL  + K
Sbjct: 329 VDYLVQGTLYPDVVESG--GGDGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 380 DEVRAVGRELGLP 392


>gi|317051162|ref|YP_004112278.1| GMP synthase large subunit [Desulfurispirillum indicum S5]
 gi|316946246|gb|ADU65722.1| GMP synthase, large subunit [Desulfurispirillum indicum S5]
          Length = 518

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 32/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ A+SGGVDSSV A L+ R  G  +  V +                      +A  V  
Sbjct: 224 VLCALSGGVDSSVAAVLIHRAIGDRLTCVFVNN--------------GLLRKNEAEAVVK 269

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQLG-A 138
           T    HY  +            F    A    P     +  N  +       V ++LG  
Sbjct: 270 TFR-DHYHMNL---HYEDASDRFLQKLAGVSDPEKKRKIIGNEFIYV--FEDVKKRLGSF 323

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D LA G  +   +      K    + +           +    +     L  P  ++ K+
Sbjct: 324 DFLAQG-TLYPDVIESVSVKGPSAVIKSHHN-------VGGLPENIDFKLLEPFRELFKD 375

Query: 199 SVRDLAREMGLD 210
            VR +  E+G+ 
Sbjct: 376 EVRLVGLELGMP 387


>gi|258645897|ref|ZP_05733366.1| GMP synthase [Dialister invisus DSM 15470]
 gi|260403268|gb|EEW96815.1| GMP synthase [Dialister invisus DSM 15470]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 61/202 (30%), Gaps = 48/202 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDSSV A L+ +  G  +  V                    + V D   
Sbjct: 216 DHNVLCALSGGVDSSVAAVLVHKAVGDKLTCVF--------VDHGFLRQGEAEQVVD--T 265

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLSVTRQLG 137
             +   +     D    F          S   G T P                   + +G
Sbjct: 266 FTNKFKIKLIHKDASRHFL---------SLLKGVTEPE---------------KKRKAIG 301

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ----LCD-----L 188
           A+ +   H  +      +D K         D+    +              L       L
Sbjct: 302 AEFI---HTFQEEANKLEDVKFLVQGTLYPDVVESGTATAATIKSHHNVGGLPKDMKFEL 358

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR L RE+GL 
Sbjct: 359 IEPLRELFKDEVRQLGRELGLP 380


>gi|261415047|ref|YP_003248730.1| argininosuccinate synthase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371503|gb|ACX74248.1| argininosuccinate synthase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325789|gb|ADL24990.1| argininosuccinate synthase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 422

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 30/142 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + K     +VV+A SGG+D+S++   LK   YDV                  +     D 
Sbjct: 1   MAKTESKKKVVLAYSGGLDTSIIIPWLKET-YDV------------EVIAFAADLGQNDF 47

Query: 74  YDARRV---CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNR 122
            +A+ +            YV D ++ F    + P          +Y  G +    +    
Sbjct: 48  PNAKALEEKALKTGASKCYVLDLKKEFLEEYVWPTVRAGAKYEGTYLLGTSFARPLIAKY 107

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
            VK         + GA  +A G
Sbjct: 108 QVKI------AEKEGAYAVAHG 123


>gi|156391964|ref|XP_001635819.1| predicted protein [Nematostella vectensis]
 gi|156222917|gb|EDO43756.1| predicted protein [Nematostella vectensis]
          Length = 555

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           D R+   +SGG+DSS+VAALL    K  G D     +Q ++               DV  
Sbjct: 247 DRRIGCFLSGGLDSSLVAALLTKEAKNAGID---YPIQTFSIGMEGSP--------DVAA 295

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVIVPFASSY 108
           AR+V   I   H+   +         + VI     SY
Sbjct: 296 ARKVAAHIGSEHHEVTFTPEEGIQALHDVI-YALESY 331


>gi|33519975|ref|NP_878807.1| GMP synthase [Candidatus Blochmannia floridanus]
 gi|44887941|sp|Q7VRS2|GUAA_BLOFL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33504321|emb|CAD83213.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Blochmannia
           floridanus]
          Length = 526

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 43/202 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RVV+A SGG+DS V A LLK                   +  +  C     V +    
Sbjct: 228 QDRVVLAFSGGIDSLVTALLLKYA----------------INHEQFVCVF---VNNGLLC 268

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLS-----V 132
           C+ IN    + ++ +++++  I+  +    + +  T +   +  R +     +      +
Sbjct: 269 CNEIN---RISNFCKKYQDLNIIHLSEEKRFLSALTGVIDPEEKRKIIGKIFVEIFQAQI 325

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ---SYFLFATTQQQLCDLR 189
           ++      LA G      +  G       + C   ++ +       F  +   Q L    
Sbjct: 326 SQLKNIKWLAQGTIYSDVIESG-------MSCASANIIKSHHNVGGFPSSVNIQLLE--- 375

Query: 190 FPLGDMKKESVRDLAREMGLDI 211
            P+ D+ K+ VR++   +GL +
Sbjct: 376 -PIKDLFKDEVRNIGLYLGLPL 396


>gi|114332031|ref|YP_748253.1| argininosuccinate synthase [Nitrosomonas eutropha C91]
 gi|122313270|sp|Q0AEE4|ASSY_NITEC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|114309045|gb|ABI60288.1| argininosuccinate synthase [Nitrosomonas eutropha C91]
          Length = 404

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 26/134 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  + V+A SGG+D+SV+   L+   Y    VT                  G+++  AR 
Sbjct: 3   KVKKAVLAFSGGLDTSVILKWLQDT-YQCEVVTF-----------TADIGQGEEIEPARA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                 +   ++ D  E F    + P           Y  G +    +   R V      
Sbjct: 51  KALQFGIKEIFIEDLREEFVRDYVFPMFRANTVYEGEYLLGTSIARPLIAKRQV------ 104

Query: 131 SVTRQLGADVLATG 144
            + +Q GAD ++ G
Sbjct: 105 EIAQQTGADAVSHG 118


>gi|315656488|ref|ZP_07909377.1| argininosuccinate synthase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493047|gb|EFU82649.1| argininosuccinate synthase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 390

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 63/198 (31%), Gaps = 35/198 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +K   G D I V     +       +      Q   D   V 
Sbjct: 4   RVVLAYSGGLDTSVAIGWMKDKLGVDTIAV-----SVDVGQGGEDMDVIRQRALDCGAV- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  Y+ D ++ F     +P   +    +   P V   +R +    L+   +Q GA 
Sbjct: 58  -----EAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSALSRPLIAKHLVMAAKQFGAT 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            +A G                    +  D  R +  F              P+ D+  + 
Sbjct: 113 TMAHG-----------------CTGKGNDQVRFEVSFTSLAPDL---KCVSPIRDLSLQR 152

Query: 199 SV-RDLAREMGLDIADKS 215
            V    A E  L I    
Sbjct: 153 DVSIAYAEEHHLPIETTK 170


>gi|269958931|ref|YP_003328720.1| NAD+ synthetase [Anaplasma centrale str. Israel]
 gi|269848762|gb|ACZ49406.1| NAD+ synthetase [Anaplasma centrale str. Israel]
          Length = 506

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ MSGG+DS++VA +     G   +   +                    V DA +   
Sbjct: 260 VVLGMSGGIDSALVATIATDALGPQYVHTFM----------LPTRYTTPSSVEDAAKCAL 309

Query: 82  TINVSHYVFDYEERFR 97
            +  SH V   EE +R
Sbjct: 310 NLGTSHTVMSIEEIYR 325


>gi|256370679|ref|YP_003108504.1| putative bifunctional argininosuccinate synthase/acetyltransferase
           [Candidatus Sulcia muelleri SMDSEM]
 gi|256009471|gb|ACU52831.1| putative bifunctional argininosuccinate synthase
           (ArgG)/acetyltransferase activity of N-acetylglutamate
           synthase (ArgA) [Candidatus Sulcia muelleri SMDSEM]
          Length = 578

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+S     L   GY VI +                    +++    +   
Sbjct: 188 KILLAYSGGLDTSYCLKYLTNKGYKVITI-----------IINTGGFKNKELELIEKRAL 236

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGA 138
            I  + HY  + +E +    I              P    +    F  +L    +++L  
Sbjct: 237 KIGAIYHYSINAKEYYYYKCIKYLIYGNILKNNTYPLSVSSERF-FQAILIAEFSKKLNV 295

Query: 139 DVLATG 144
             ++ G
Sbjct: 296 KAISHG 301


>gi|89898294|ref|YP_515404.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56]
 gi|89331666|dbj|BAE81259.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56]
          Length = 247

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 26/129 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            ++VVA+SGG DS  +  +LK     G+      L LY      K   SC +        
Sbjct: 35  TKIVVALSGGKDSLTLLLMLKAISGRGFP----ELDLYAVNIGGKY--SCGSEVSQKYLA 88

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +CD I V          +   V                C  C++ V+   L    +++G
Sbjct: 89  NICDKIQVPFTSI--ASPYSPEVPE--------------CYSCSQ-VRRRLLFQAAKEVG 131

Query: 138 ADVLATGHY 146
           A  +A GH+
Sbjct: 132 ASAVAFGHH 140


>gi|312148340|gb|ADQ30999.1| NAD+ synthetase [Borrelia burgdorferi JD1]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|310658322|ref|YP_003936043.1| pp-loop family protein [Clostridium sticklandii DSM 519]
 gi|308825100|emb|CBH21138.1| PP-loop family protein [Clostridium sticklandii]
          Length = 290

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 31/146 (21%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASK 62
           LN  ++ +     R+ VA+SGG DS ++A L +         ++V  + +          
Sbjct: 44  LNDYEMIQP--GDRIAVAISGGKDSMLMAKLFQELQKFSKIPFEVEYIAM-----DPGYH 96

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                    +          +N+   V      F   +               PC  C  
Sbjct: 97  PSIRELMMDNFNY-------LNIPIKV------FETDIFKIADKI----AQDYPCYMC-A 138

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIR 148
            ++   L + T++LG + LA GH+  
Sbjct: 139 KMRRGALYNKTKELGCNKLALGHHFN 164


>gi|302854504|ref|XP_002958759.1| hypothetical protein VOLCADRAFT_32944 [Volvox carteri f.
          nagariensis]
 gi|300255867|gb|EFJ40149.1| hypothetical protein VOLCADRAFT_32944 [Volvox carteri f.
          nagariensis]
          Length = 225

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MRVV  +SGG DS     L K+ G+DV+ +   L       +    C             
Sbjct: 1  MRVVALVSGGKDSCYSMQLCKQHGHDVVALANLLPEESAPDELDSFCFQTVGHQLIGAYA 60

Query: 81 DTINVSH 87
            + +  
Sbjct: 61 ACMGIPL 67


>gi|240138880|ref|YP_002963355.1| argininosuccinate synthase (citrulline-aspartate ligase)
           [Methylobacterium extorquens AM1]
 gi|240008852|gb|ACS40078.1| argininosuccinate synthase (citrulline-aspartate ligase)
           [Methylobacterium extorquens AM1]
          Length = 413

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 30/140 (21%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            N    +VV+A SGG+D+S++   L+   G +V+  T                  G+++ 
Sbjct: 6   PNKSVKKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELE 52

Query: 75  DARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTV 124
            ARR  + + +     ++ D  E F    + P   +       Y  G +    +   + +
Sbjct: 53  PARRKAELLGIRPENIFIEDLREEFVRDYVFPMFRANAVYEGIYLLGTSIARPLIAKKQI 112

Query: 125 KFSDLLSVTRQLGADVLATG 144
                  +  ++GAD +  G
Sbjct: 113 ------EIAERVGADAVCHG 126


>gi|224532714|ref|ZP_03673331.1| NAD+ synthetase [Borrelia burgdorferi WI91-23]
 gi|224512332|gb|EEF82716.1| NAD+ synthetase [Borrelia burgdorferi WI91-23]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|223888702|ref|ZP_03623293.1| NAD+ synthetase [Borrelia burgdorferi 64b]
 gi|225548732|ref|ZP_03769779.1| NAD+ synthetase [Borrelia burgdorferi 94a]
 gi|223885518|gb|EEF56617.1| NAD+ synthetase [Borrelia burgdorferi 64b]
 gi|225370762|gb|EEH00198.1| NAD+ synthetase [Borrelia burgdorferi 94a]
 gi|312149113|gb|ADQ29184.1| NAD+ synthetase [Borrelia burgdorferi N40]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|195941656|ref|ZP_03087038.1| NH(3)-dependent NAD+ synthetase [Borrelia burgdorferi 80a]
 gi|221218080|ref|ZP_03589546.1| NAD+ synthetase [Borrelia burgdorferi 72a]
 gi|224533645|ref|ZP_03674234.1| NAD+ synthetase [Borrelia burgdorferi CA-11.2a]
 gi|226321002|ref|ZP_03796547.1| NAD+ synthetase [Borrelia burgdorferi 29805]
 gi|221192028|gb|EEE18249.1| NAD+ synthetase [Borrelia burgdorferi 72a]
 gi|224513318|gb|EEF83680.1| NAD+ synthetase [Borrelia burgdorferi CA-11.2a]
 gi|226233603|gb|EEH32339.1| NAD+ synthetase [Borrelia burgdorferi 29805]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|225549498|ref|ZP_03770464.1| NAD+ synthetase [Borrelia burgdorferi 118a]
 gi|225369775|gb|EEG99222.1| NAD+ synthetase [Borrelia burgdorferi 118a]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|226321830|ref|ZP_03797356.1| NAD+ synthetase [Borrelia burgdorferi Bol26]
 gi|226233019|gb|EEH31772.1| NAD+ synthetase [Borrelia burgdorferi Bol26]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|218249235|ref|YP_002375030.1| NAD+ synthetase [Borrelia burgdorferi ZS7]
 gi|218164423|gb|ACK74484.1| NAD+ synthetase [Borrelia burgdorferi ZS7]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|216264850|ref|ZP_03436842.1| NAD+ synthetase [Borrelia burgdorferi 156a]
 gi|215981323|gb|EEC22130.1| NAD+ synthetase [Borrelia burgdorferi 156a]
          Length = 512

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGGVDS+++A L     G + V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGVDSALIAYLACFALGAENVVGISM-----PSKFSSAGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   Y
Sbjct: 308 SRKLGFKLIEMPIKDLF--QVSSRFFEGY 334


>gi|114762215|ref|ZP_01441683.1| argininosuccinate synthase [Pelagibaca bermudensis HTCC2601]
 gi|114545239|gb|EAU48242.1| argininosuccinate synthase [Roseovarius sp. HTCC2601]
          Length = 406

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 15/95 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR+
Sbjct: 4   PKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPARK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE 112
             + + V   Y+ D  E F    + P   + A  E
Sbjct: 51  KAEMLGVSEVYIEDLREEFVRDFVFPMFRANALYE 85


>gi|146301177|ref|YP_001195768.1| argininosuccinate synthase [Flavobacterium johnsoniae UW101]
 gi|146155595|gb|ABQ06449.1| Argininosuccinate synthase [Flavobacterium johnsoniae UW101]
          Length = 397

 Score = 45.9 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S     LK   GY+V  V   L ++   S  + S    +        
Sbjct: 2   KKVVLAYSGGLDTSYCLKYLKNEKGYEVHTV---LVDTGGFSAEELSAIEKRAYELGSAQ 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL--LSVTRQLG 137
              + +        +++ +  I              P       V F  +  +   +++G
Sbjct: 59  HANLTIL-------DKYYDKAIKYLIFGNVLKNNTYPLSVSAERV-FQAIEAIKYAKKVG 110

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 111 ATAIAHG 117


>gi|315223813|ref|ZP_07865662.1| GMP synthase [Capnocytophaga ochracea F0287]
 gi|314946259|gb|EFS98259.1| GMP synthase [Capnocytophaga ochracea F0287]
          Length = 515

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
                +    L     + +V++ +SGGVDS+V A LL +  G  +  + 
Sbjct: 203 DNFVEMTVAQLKAQVGNEKVILGLSGGVDSTVAAVLLNKAIGKQLHCIF 251


>gi|212550929|ref|YP_002309246.1| GMP synthase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549167|dbj|BAG83835.1| glutamine-hydrolysing GMP synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 505

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL 54
           + +V++A+SGGVDSSV A L+ +  G ++  + +  
Sbjct: 211 NDKVILALSGGVDSSVSAVLINKAIGNNLTCIFIDN 246


>gi|70606217|ref|YP_255087.1| PP-loop family protein [Sulfolobus acidocaldarius DSM 639]
 gi|68566865|gb|AAY79794.1| pP-loop family protein [Sulfolobus acidocaldarius DSM 639]
          Length = 315

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 16/131 (12%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           R+ VA+SGG DS+ +  L+    ++ G++++G+ + L          G   + + +  A 
Sbjct: 49  RIGVAVSGGKDSTTLLHLMNKLAQKRGFEIVGIHIHL------GIDMGKGYSDKSLEFAL 102

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +    + V + + + +E++       F    A  +   P       VK   +  +  + G
Sbjct: 103 KNFQMLGVKYKLINVKEKYG------FTIDEAKFKIRRPICSTCGLVKRYSMEEIAEEEG 156

Query: 138 ADVLATGHYIR 148
            D + TGH + 
Sbjct: 157 LDTVVTGHNLN 167


>gi|262306047|gb|ACY45616.1| gln amidotransferase [Eurypauropus spinosus]
          Length = 197

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQL 54
          +V++ +SGGVDS+V  ALL +  G + VI + +  
Sbjct: 45 KVLMLVSGGVDSTVCVALLHKALGAENVIALHIDN 79


>gi|15838456|ref|NP_299144.1| transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106947|gb|AAF84664.1|AE004007_3 transcriptional regulator [Xylella fastidiosa 9a5c]
          Length = 254

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+VV A+ +  G+ V  ++++                  ++  A R+ 
Sbjct: 26 KKAVVLLSGGMDSAVVTAIAQSQGFMVHALSIRY-----------GQRHTSELDAAVRIA 74

Query: 81 DTINV-SHYVFD 91
            +NV +H V D
Sbjct: 75 RVLNVAAHKVVD 86


>gi|323702011|ref|ZP_08113680.1| NAD+ synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323533097|gb|EGB22967.1| NAD+ synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 34/192 (17%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+ +SGG+DS+V AAL  K  G +   V L    S+  S              A+ + 
Sbjct: 323 KVVIGVSGGIDSAVSAALYTKALGPEN--VMLVNMPSKYNSNTTKDL--------AKILA 372

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLL-SVTRQLG 137
           + +   + V   +E     V+            P   +  N+ +  K S  +    +   
Sbjct: 373 NNLGCFYDVLPIQE-----VVDHTIKQIE--NNPAVRLADNKKINLKISPFIAENIQARD 425

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE-RDQSYFLFATTQQQLCDLRFPLGDMK 196
                      +   V      +  M         DQ+ FL A            L D+ 
Sbjct: 426 RSARLLAAVAAAFGGVFTCNANKSEMTVGYSTLYGDQAGFLAA------------LADLW 473

Query: 197 KESVRDLAREMG 208
           K  V +LA  + 
Sbjct: 474 KHQVYELAHYLN 485


>gi|322805870|emb|CBZ03435.1| queuosine Biosynthesis QueC ATPase [Clostridium botulinum H04402
          065]
          Length = 219

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H++ D 
Sbjct: 50 DICKKYNIEHHILDL 64


>gi|226948888|ref|YP_002803979.1| ExsB protein [Clostridium botulinum A2 str. Kyoto]
 gi|254764323|sp|C1FN27|QUEC_CLOBJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|226843177|gb|ACO85843.1| ExsB protein [Clostridium botulinum A2 str. Kyoto]
          Length = 219

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H++ D 
Sbjct: 50 DICKKYNIEHHILDL 64


>gi|224373095|ref|YP_002607467.1| argininosuccinate synthase [Nautilia profundicola AmH]
 gi|223588443|gb|ACM92179.1| argininosuccinate synthase [Nautilia profundicola AmH]
          Length = 400

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 85/271 (31%), Gaps = 89/271 (32%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VV+A SGG+D+S++   L+   Y+   VT                  G++V +AR   
Sbjct: 1   MKVVLAYSGGLDTSIILKWLQDT-YNAEVVTF-----------TADIGQGEEVEEAREKA 48

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + V     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 49  IKLGVKPENIFIEDLREDFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQI------ 102

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            + +Q+GA+ +A G                           DQ              +RF
Sbjct: 103 EIAKQVGAEAVAHG---------------------ATGKGNDQ--------------VRF 127

Query: 191 PLGDM-KKESVRDLA--REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
            LG    K  ++ +A  RE  L                    +  +++ A     G  ++
Sbjct: 128 ELGYYALKPDIKVIAPWREWDL--------------------NSREKLLAYAEKHGIPIN 167

Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPL 278
            +G+            I    G+   + +P 
Sbjct: 168 RHGKKSPYSMDANLLHISYEGGI---LEDPW 195


>gi|170754738|ref|YP_001781193.1| ExsB protein [Clostridium botulinum B1 str. Okra]
 gi|254764324|sp|B1IL95|QUEC_CLOBK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|169119950|gb|ACA43786.1| ExsB protein [Clostridium botulinum B1 str. Okra]
          Length = 219

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H++ D 
Sbjct: 50 DICKKYNIEHHILDL 64


>gi|168180210|ref|ZP_02614874.1| ExsB protein [Clostridium botulinum NCTC 2916]
 gi|182669149|gb|EDT81125.1| ExsB protein [Clostridium botulinum NCTC 2916]
          Length = 216

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H++ D 
Sbjct: 50 DICKKYNIEHHILDL 64


>gi|153939170|ref|YP_001390902.1| ExsB protein [Clostridium botulinum F str. Langeland]
 gi|189038908|sp|A7GDP2|QUEC_CLOBL RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|152935066|gb|ABS40564.1| ExsB protein [Clostridium botulinum F str. Langeland]
 gi|295318964|gb|ADF99341.1| ExsB protein [Clostridium botulinum F str. 230613]
          Length = 219

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H++ D 
Sbjct: 50 DICKKYNIEHHILDL 64


>gi|148379524|ref|YP_001254065.1| hypothetical protein CBO1557 [Clostridium botulinum A str. ATCC
          3502]
 gi|153933891|ref|YP_001383901.1| exsB protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936103|ref|YP_001387449.1| exsB protein [Clostridium botulinum A str. Hall]
 gi|189038905|sp|A7FU68|QUEC_CLOB1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189038907|sp|A5I232|QUEC_CLOBH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|148289008|emb|CAL83097.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152929935|gb|ABS35435.1| exsB protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932017|gb|ABS37516.1| exsB protein [Clostridium botulinum A str. Hall]
          Length = 219

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H++ D 
Sbjct: 50 DICKKYNIEHHILDL 64


>gi|302504114|ref|XP_003014016.1| hypothetical protein ARB_07736 [Arthroderma benhamiae CBS 112371]
 gi|291177583|gb|EFE33376.1| hypothetical protein ARB_07736 [Arthroderma benhamiae CBS 112371]
          Length = 405

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V++A SGG+D+S + A L   G++V+                      +D  +A R
Sbjct: 315 QKEKVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAER 361

Query: 79  VCDTINV-SHYVFDYEERFRNA 99
               +      V D ++ F   
Sbjct: 362 KALAVGAKKLVVEDLKKEFVED 383


>gi|305680191|ref|ZP_07403001.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660811|gb|EFM50308.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium matruchotii
           ATCC 14266]
          Length = 532

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 24/193 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +  +SGGVDS+V AAL++R  G  +  V     +       +        V       
Sbjct: 228 RAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVQTDFV------- 277

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGA 138
                     D  E F + +                 +          +L       +GA
Sbjct: 278 KATGAKLVTVDEREAFLSKLAGVTDPEAKRKAIGNEFIRSFERA-VGLVLADEPADTVGA 336

Query: 139 -DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + L  G      +  G  G       +           +    +     L  PL  + K
Sbjct: 337 VEFLVQGTLYPDVVESG--GGAGTANIKSHHN-------VGGLPEDLEFQLVEPLRLLFK 387

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 388 DEVRAVGRELGLP 400


>gi|157363227|ref|YP_001469994.1| argininosuccinate synthase [Thermotoga lettingae TMO]
 gi|187470633|sp|A8F446|ASSY_THELT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157313831|gb|ABV32930.1| Argininosuccinate synthase [Thermotoga lettingae TMO]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 25/131 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++A SGG+D+SV+   L   G++VI     L         +    +      A +V 
Sbjct: 2   KKVILAYSGGLDTSVILKWLSEKGFEVIAFVANLGQKEDFKAIECKALSTG----ASKV- 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  YV D    F    + P           Y  G         +R +     + + 
Sbjct: 57  -------YVEDLRREFVTEFVFPALMGNALYEGRYLLG------TALSRPLIAKKQVEIA 103

Query: 134 RQLGADVLATG 144
            +  A  +A G
Sbjct: 104 EKENAAFVAHG 114


>gi|110803991|ref|YP_698721.1| thiamine biosynthesis protein ThiI [Clostridium perfringens SM101]
 gi|123047381|sp|Q0ST36|THII_CLOPS RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|110684492|gb|ABG87862.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           perfringens SM101]
          Length = 385

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         ++ +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELSERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLMVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYDTSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|320333553|ref|YP_004170264.1| argininosuccinate synthase [Deinococcus maricopensis DSM 21211]
 gi|319754842|gb|ADV66599.1| Argininosuccinate synthase [Deinococcus maricopensis DSM 21211]
          Length = 409

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 28/134 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             ++V+A SGG+D+S++   L+   GYDV+  T                  G +V +AR 
Sbjct: 3   KPKIVLAYSGGLDTSIILKWLQTERGYDVVAFT-------------ADLGQGDEVEEARV 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
                  VS +  D  E F    + P   +       Y  G          R +    ++
Sbjct: 50  KALNTGAVSAHALDLREEFVRDYVYPMFRTGALYEGYYLLG------TSIARPLIAKKMV 103

Query: 131 SVTRQLGADVLATG 144
            + +Q GA  ++ G
Sbjct: 104 EIAQQEGAVAVSHG 117


>gi|326791555|ref|YP_004309376.1| argininosuccinate synthase [Clostridium lentocellum DSM 5427]
 gi|326542319|gb|ADZ84178.1| argininosuccinate synthase [Clostridium lentocellum DSM 5427]
          Length = 402

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +  YDVI V + +    +    +                
Sbjct: 4   KVVLAYSGGLDTSVIIPWLKENYDYDVIAVCINVGQDAELEGLEER-------------A 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
            ++ V   YV + ++ F    + P   S A  E+         R V    L++V  + GA
Sbjct: 51  LSMGVSKVYVENVKDEFMREYVFPMIQSGAIYESKYYLGTSIARAVIAKTLVNVALKEGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFP--LG 193
             +  G                          +      F      L     +  P  + 
Sbjct: 111 VAICHG-----------------------CTGKGNDQIRFELGIAALAPHLKVIAPWRIW 147

Query: 194 DM-KKESVRDLAREMGLDIADKSD 216
           D+  +E   +   + GL +  K +
Sbjct: 148 DISSREEEIEYLEKRGLPVPMKKE 171


>gi|297568676|ref|YP_003690020.1| hypothetical protein DaAHT2_0697 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924591|gb|ADH85401.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 360

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 21  MRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M   +A+ SGG+DS++   ++      V+ V          S   G+          + V
Sbjct: 1   MTTALALYSGGLDSTLACRVIMEQNIRVLAVKF-------ISPFFGADLLQYPEQYRQMV 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                +   + D  E +   +  P   ++  G+   PCVDC   +   +   +  ++GA+
Sbjct: 54  RRKYGIEVILRDLTEPYLQMLAAP---AHGYGKNFNPCVDCKIML-MGEARRMLAEVGAE 109

Query: 140 VLATGHYIRSRLYVGDDGKRRRI---------MCRPMDLER 171
            L +G  +  R         R I         + RP+    
Sbjct: 110 FLISGEVLGQRPMSQRRDTLRVIERDSGCADLLLRPLCARN 150


>gi|182626455|ref|ZP_02954207.1| peptidase T [Clostridium perfringens D str. JGS1721]
 gi|177908252|gb|EDT70810.1| peptidase T [Clostridium perfringens D str. JGS1721]
          Length = 385

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 34/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS V A L+ R G +   V    Y+S   +  +      +      R  +  
Sbjct: 178 MVMLSGGIDSPVAAYLMARRGVETHCVY---YHSHPYTSERAKDKVKELAKIVGRYTEK- 233

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            ++ YV  + E  +  +I                    R         ++ +     + T
Sbjct: 234 -ITLYVVPFTEI-QMDIIEKCRED--------ELTIIMRRFMMRVACELSERKKIQSITT 283

Query: 144 GHYIRSRLYVGDDGKRR------RIMCRP---------MDLERD-QSYFLFATTQQQLCD 187
           G  I        +G         R + RP         MD+ RD  +Y       +  C 
Sbjct: 284 GESIGQVASQTMEGLIVSNDVSDRPVFRPLIAMDKEDIMDIARDIDTYETSILPYED-CC 342

Query: 188 LRF-PLGDMKKESVRD--LAREM 207
             F P     K  V+D  +A   
Sbjct: 343 TIFVPKHPKTKPRVKDMIIAERK 365


>gi|150399831|ref|YP_001323598.1| argininosuccinate synthase [Methanococcus vannielii SB]
 gi|150012534|gb|ABR54986.1| Argininosuccinate synthase [Methanococcus vannielii SB]
          Length = 397

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 35/199 (17%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y V+ V                     D+ +    
Sbjct: 4   KIAVLAYSGGLDTSCCLKLLEDKYNYKVVSV------------AVDVGQPEDDLKEPEEK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
              + V  HY  D +E F    I     + A  E  PL        +       + +++G
Sbjct: 52  AKKLGVLKHYTIDAKEEFAVDYIFRAIKANALYEGYPLSTALARPLIAIKI-AELAKEIG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD ++ G         G+D  R   + R    E +    +       L            
Sbjct: 111 ADAISHG-----CTGKGNDQFRFESVMRAKAPEIE---IIAPIRDLNLTRT--------- 153

Query: 198 ESVRDLAREMGLDIADKSD 216
           E +   A+E G+ I    +
Sbjct: 154 EEI-QYAKEKGIPIPVDLE 171


>gi|116192899|ref|XP_001222262.1| hypothetical protein CHGG_06167 [Chaetomium globosum CBS 148.51]
 gi|88182080|gb|EAQ89548.1| hypothetical protein CHGG_06167 [Chaetomium globosum CBS 148.51]
          Length = 407

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV +A SGG+D+SV+ A L   GY V+                      +D    +   
Sbjct: 4   KRVCLAYSGGLDTSVILAWLIEQGYTVVAF-------------LADVGQNEDYDAVKAKA 50

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASS 107
           + I     +  + ++     ++ P    
Sbjct: 51  EKIGAERMIIQNLQQELVEELVWPAVQC 78


>gi|329955512|ref|ZP_08296420.1| PP-loop family protein [Bacteroides clarus YIT 12056]
 gi|328525915|gb|EGF52939.1| PP-loop family protein [Bacteroides clarus YIT 12056]
          Length = 250

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 33/133 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD------GYDVIGVT--LQLYNSRKASKRKGSCCAGQDV 73
           R+++ +SGG DS  +  LL R        + V+ V   ++                  D 
Sbjct: 33  RILIGLSGGKDSLALVELLARRARVFKPKFSVVAVHVVMKNI------------PYQSDA 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              R   ++  V          +       F +S    ++P      NR      L ++ 
Sbjct: 81  EYLRNFAESWGVPFV------LYETE----FDASTDTRKSPCFLCSWNRR---KALFTIA 127

Query: 134 RQLGADVLATGHY 146
           ++ G + +A GH+
Sbjct: 128 KEQGCNKIALGHH 140


>gi|312792833|ref|YP_004025756.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179973|gb|ADQ40143.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 456

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 48/152 (31%), Gaps = 31/152 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV---VAALLKRDGY--DVIGVTLQLY 55
           M + E  + N        K  +V++  SGGVDS V       LK + Y  D+    L   
Sbjct: 1   MELLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLNCICRLKDE-YSLDITVAHLNHM 59

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGET 113
              +A           D      +C   N+       D  +  +        S   AG +
Sbjct: 60  LRPEADD---------DEKFVIEICKRYNIKCITRKVDVAKLKKEK----GLSEEEAGRS 106

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                      ++S    V  +L  D +  GH
Sbjct: 107 A----------RYSFFYEVAEELNIDRILLGH 128


>gi|289524536|ref|ZP_06441390.1| ThiI family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502224|gb|EFD23388.1| ThiI family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 181

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             K  + ++  SGG+DS +   LL+R+G  V  +                         +
Sbjct: 7   KNKSPKALLLFSGGLDSLLAGELLRRNGVTVTCL--------------AFTTPFFSAEKS 52

Query: 77  RRVCDTINVSHYVFDY-EERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVT 133
                  N    +    E+ +   +  P    +  G+   PC+DC+  +  K  +L+   
Sbjct: 53  IIAARRYNFPLIIAPLPEKEYIKLLFDP---PHGFGKCMNPCIDCHALMLKKAGNLM--- 106

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRR 161
           R+ G D LATG  +  R         R 
Sbjct: 107 RERGYDFLATGEVLGERPKSQTSQALRH 134


>gi|261400234|ref|ZP_05986359.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970]
 gi|269210035|gb|EEZ76490.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970]
          Length = 411

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 43/225 (19%)

Query: 26  AMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           A+SGG+DS V+  LL R     G+    V +            G      D  D  +  C
Sbjct: 2   ALSGGLDSVVLLHLLVRAGKKGGFIPEAVHIH----------HGLSPRADDWADFCQNYC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V           +  V        AA              +++         G DV
Sbjct: 52  DMLGVRLETV------KVCVEKNGLGIEAAARQK----------RYAAFAEK----GFDV 91

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           LA  H+        DD     ++             + A        + + PL    ++ 
Sbjct: 92  LALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGIIWRPLLPFSRQD 144

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 145 IWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 189


>gi|220905422|ref|YP_002480734.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869721|gb|ACL50056.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 264

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 65/200 (32%), Gaps = 37/200 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV VA SGGVDS V   LLK         TL++       + +         +D +    
Sbjct: 32  RVGVAASGGVDSFV---LLK---------TLKIRQGIVPFRFEIMALHLNPGFDGQSHAA 79

Query: 82  TI------NVSHYVFDYEERFRNAVIVPFASSY-AAGETPLPCVDCNRTVKFSDLLSVTR 134
            +       +  +V          V      ++         C  C   ++   L  +  
Sbjct: 80  LLPWLAAHGIPAHV---------EVTSHGPDAHSEKNLRRSACFRC-AWLRRKRLFELCS 129

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           Q G   LA GH   +   V           R   +  ++ +F           L  PL  
Sbjct: 130 QYGLTHLALGH--NAEDLVETFFMNICRNGRVDGMSMNEPFFDGKL------RLIRPLML 181

Query: 195 MKKESVRDLAREMGLDIADK 214
           ++K+ +R  AR+ GL I   
Sbjct: 182 VEKKYIRQAARQWGLPIWAN 201


>gi|189460555|ref|ZP_03009340.1| hypothetical protein BACCOP_01196 [Bacteroides coprocola DSM 17136]
 gi|189432799|gb|EDV01784.1| hypothetical protein BACCOP_01196 [Bacteroides coprocola DSM 17136]
          Length = 249

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 57/145 (39%)

Query: 22  RVVVAMSGGVDS------------------SVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           +++V +SGG DS                  SVVAA        V+   +           
Sbjct: 33  KILVGLSGGKDSLALLELLARRSRIYKPRFSVVAA-------HVV---MTNI-------- 74

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CN 121
                   D+   R   + + V    ++           P   +  +     PC     N
Sbjct: 75  ----AYESDMDYLRSFAENLGVPFVRYETS-------FDPSTDTRKS-----PCFLCSWN 118

Query: 122 RTVKFSDLLSVTRQLGADVLATGHY 146
           R      L +V ++ G + +A GH+
Sbjct: 119 RR---KALFTVAKEQGCNKIALGHH 140


>gi|126651677|ref|ZP_01723880.1| possible aluminum resistance protein [Bacillus sp. B14905]
 gi|126591626|gb|EAZ85732.1| possible aluminum resistance protein [Bacillus sp. B14905]
          Length = 219

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + +V  SGG DS+      K    ++  VT   ++  +  + +  C        A+ 
Sbjct: 2  KQEKAIVVFSGGQDSTTCLFWAKERFAEIEAVT---FDYGQRHRLEIDC--------AKL 50

Query: 79 VCDTINVSHYVFDYE 93
          + + + + H++ D  
Sbjct: 51 IAEELGIKHHILDMS 65


>gi|146295173|ref|YP_001178944.1| exsB protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|167016419|sp|A4XFR8|QUEC_CALS8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|145408749|gb|ABP65753.1| preQ(0) biosynthesis protein QueC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 225

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 34/198 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           MR VV +SGG+DS+ +   +K  GY+          +   S   G     +++  A++ C
Sbjct: 1   MRAVVVLSGGMDSTTLLYDVKNQGYE----------TYTISFLYGQ-KHSKELEFAKKTC 49

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA--------SSYAAGETPLPCVDCNRTVKFSDLLS- 131
           + + V H + D    F   +               Y   E+    V  NR + F  L + 
Sbjct: 50  ELLKVPHKIVDIS--FFADLAPSALTKSSWSVPEGYYTDESMKQTVVPNRNMVFLSLATS 107

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRF 190
               L A  L  G +        D  K     M R +                Q+ +L  
Sbjct: 108 YAISLKAQKLFYGAHAGDHPIYPDCRKEFVEAMKRSI-----------LLCDYQIVELEA 156

Query: 191 PLGDMKKESVRDLAREMG 208
           P  D+KKE +  +  ++G
Sbjct: 157 PYVDLKKEDILKIGLKLG 174


>gi|298674631|ref|YP_003726381.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287619|gb|ADI73585.1| PP-loop domain protein [Methanohalobium evestigatum Z-7303]
          Length = 314

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-------SKRKGSCCAG 70
            ++  + +A+SGG DS+V+  +L            +++  R              S    
Sbjct: 57  NRNETIAIALSGGKDSTVLLYILN-----------KIFGDRPDINLVAITIDEGISGYRL 105

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             +  ++ + D + + H +  + + +   +        + G     C  C    K   L 
Sbjct: 106 DTIQKSKELTDNLGIKHVIRSFADEYGMTLDELTQKQRSYG----ACSYCGVFRK-KLLN 160

Query: 131 SVTRQLGADVLATGHYI 147
              ++ GA  LA GH +
Sbjct: 161 KTAKEEGATRLAIGHNL 177


>gi|291460401|ref|ZP_06599791.1| PP-loop family protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416968|gb|EFE90687.1| PP-loop family protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 387

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 30/146 (20%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  LN  +L +  +  R+ V +SGG DS ++A L +            +    K      
Sbjct: 130 AKALNDYELVE--EGDRICVCISGGKDSMLMAKLFQE-----------VKRHNKFPFELV 176

Query: 66  SCCAGQDVYDA-RRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
             C      +A RR+       + +          F+  +         +     PC  C
Sbjct: 177 FLCMDPGYNEANRRIIEENAALLGIPLRF------FQTEIFDAVFHIEKS-----PCYVC 225

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHY 146
              ++   L    R+LG + +A GH+
Sbjct: 226 -ARMRRGWLYRRARELGCNKIALGHH 250


>gi|289661975|ref|ZP_06483556.1| ExsB protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667005|ref|ZP_06488080.1| ExsB protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 224

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V AL +  G+ V  +          S R G      ++  A RV 
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVYAL----------SVRYGQ-RHTSELDAATRVA 50

Query: 81 DTIN-VSHYVFD 91
               ++H V D
Sbjct: 51 AAQGVIAHKVVD 62


>gi|282898636|ref|ZP_06306624.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196504|gb|EFA71413.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 279

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 64/197 (32%), Gaps = 51/197 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDS++VA +     ++V+G      +   A          +++ +A     TI
Sbjct: 21  LIAYSGGVDSTLVAKVA----HEVLG------DRAVAVTAVSPSLLPEELTEATAQAATI 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            ++H +                       T  P   C  C   +    L  +  + G   
Sbjct: 71  GITHKIV------------HTQEMANPNYTSNPVNRCYFCKSEL-HDTLKPLALEWGYSY 117

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKE 198
           +  G                       D  +D   +       +    R PL +  + K 
Sbjct: 118 VIDGVNA--------------------DDLKD---YRPGIQAAKERGARSPLAEIGITKM 154

Query: 199 SVRDLAREMGLDIADKS 215
            VR L++++ L   +K 
Sbjct: 155 EVRQLSQQLALPWWNKP 171


>gi|150376479|ref|YP_001313075.1| NAD synthetase [Sinorhizobium medicae WSM419]
 gi|150031026|gb|ABR63142.1| NAD+ synthetase [Sinorhizobium medicae WSM419]
          Length = 335

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DSSV  AL  R  G  +V  + +   +S   S R G   A     +A  V +
Sbjct: 45  VLGLSGGIDSSVSVALAVRAVGAKNVFCLFMPENDSDPESLRLGRLIAETFGVEA--VVE 102

Query: 82  TINVSHYVFDYEERF--RNAVIVPFASSYAAG 111
            I       D    +  R+A I      Y  G
Sbjct: 103 DIG---PTLDAMGCYQRRDAFIRELVPEYGQG 131


>gi|56460294|ref|YP_155575.1| NAD synthetase [Idiomarina loihiensis L2TR]
 gi|56179304|gb|AAV82026.1| NAD synthase [Idiomarina loihiensis L2TR]
          Length = 543

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++  A+     G D V  V +                +   + DA +  
Sbjct: 282 VVLGLSGGIDSALTLAIASDALGADKVHAVMM-----------PFRYTSDMSLEDAEKQA 330

Query: 81  DTINVSHYVFDYEERFRN 98
           DT+ V + V   E  F  
Sbjct: 331 DTLGVRYDVVPIEPMFNE 348


>gi|20094193|ref|NP_614040.1| ATPase [Methanopyrus kandleri AV19]
 gi|19887215|gb|AAM01970.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 334

 Score = 45.9 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 48/216 (22%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +A+SGG DS V   +   D ++V + VT          +     C    + +AR+  + +
Sbjct: 8   IALSGGKDS-VATLIDAADRWNVKVAVT-------VVHEFTDKTC----LENARKAAEHV 55

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V H V     R        FA +   G     C  C R+V  +  L   R+LG   + T
Sbjct: 56  GVDHEVVKLRLREW------FARALKEGRP--ICTKCGRSVLTAACL-RARELGCATVLT 106

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           GH +R        GK  R    P          +       L            E +RD+
Sbjct: 107 GHELR--------GKFGRRTTHPYPPG------VTVVRYPALRR-------WTWEDIRDI 145

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
              +G    + +     C ++       ++ +    
Sbjct: 146 VSSLGWFNPEYT-----CPIRPYGVHRFIEEVGYNP 176


>gi|306820600|ref|ZP_07454229.1| NAD+ synthetase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551331|gb|EFM39293.1| NAD+ synthetase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 247

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGGVDS+VVA L+K          L   NS           +G  + DA  +    
Sbjct: 27  LVGISGGVDSAVVANLIK----------LACPNSSLGVIIP-IHSSGNSLDDANLLIKQC 75

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD----CN--RTVKFSDLLSVTRQLG 137
           N+     D     +  ++     +    +            N    ++ S L S+   LG
Sbjct: 76  NIQSVTVDLSVEHQ-MILNKSMDTIKGLKLFKEDYLKITDANLRARLRMSTLYSIANNLG 134

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                        + VG D               D++Y  + T          PL  + K
Sbjct: 135 Y------------MVVGTD-------------NADETYTGYFTKYGDGAVDLMPLKKILK 169

Query: 198 ESVRDLAREMGLD 210
           + V ++ R +G+ 
Sbjct: 170 KDVYEIGRVLGVP 182


>gi|255534562|ref|YP_003094933.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340758|gb|ACU06871.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 37/209 (17%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSR 58
           M+         L+L  +P+  R ++A+SGGVDS V+  L       ++V  V  +L    
Sbjct: 1   MLTQATFDAQLLNLKPDPESARYLLAVSGGVDSMVLLYLFSHSNLEFEVAHVNYRLRGVD 60

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
             + ++               C   +++ +V+         V          G+      
Sbjct: 61  SDADQRI----------VEEFCAKHHLTLHVY--------EVGDHD------GKPANSVQ 96

Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
              R +++     +  Q     + T H++  +L           + R   L       L 
Sbjct: 97  LWARELRYGFFRKIQIQSDLQYIVTAHHLNDQLE-----TFIINLSRASGLN-----GLS 146

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREM 207
                +   +  PL +  K  + D A + 
Sbjct: 147 GIPSNE-NGILRPLLNFTKNDIYDFAAQR 174


>gi|254516699|ref|ZP_05128758.1| exsB protein [gamma proteobacterium NOR5-3]
 gi|219675122|gb|EED31489.1| exsB protein [gamma proteobacterium NOR5-3]
          Length = 232

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 20/89 (22%)

Query: 3  VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
          +SE   +NS          + V+ +SGG+DS+ V AL K  GY               S 
Sbjct: 1  MSEPPSMNS--------SKKAVILVSGGLDSTTVLALAKEQGYRC----------YSLSF 42

Query: 63 RKGSCCAGQDVYDARRVCDTIN-VSHYVF 90
            G     +    A RV  T+  V H V 
Sbjct: 43 DYGQRHRAELFA-AERVSKTLGDVEHKVV 70


>gi|110766606|ref|XP_001120341.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Apis
           mellifera]
          Length = 528

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D  +   +SGG+DSS++AALL +   D         + +  S   G      D+  AR+
Sbjct: 246 SDREIGCLLSGGLDSSLIAALLVKHAKD------ANLSYKIKSFAIGM-GDSPDIIAARQ 298

Query: 79  VCDTINVSHYVFDYEERFRNAVIV 102
           V + I   H+   +   F N VI 
Sbjct: 299 VAEYIGTEHHEIIF---FENDVID 319


>gi|297566590|ref|YP_003685562.1| GMP synthase large subunit [Meiothermus silvanus DSM 9946]
 gi|296851039|gb|ADH64054.1| GMP synthase, large subunit [Meiothermus silvanus DSM 9946]
          Length = 507

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 60/192 (31%), Gaps = 30/192 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV++A+SGGVDSS +A LL R     +G      +   A           + ++      
Sbjct: 212 RVMLAVSGGVDSSTLALLLSRA----VG------DKLTAIFVDHGLLRQGERHEVEAALR 261

Query: 82  TINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            +     V D  E+F  A   V  P       G   +          F        Q G 
Sbjct: 262 PLGDGFRVVDAAEQFLTALKGVSDPEEKRRVVGREFIRV--------FEAEARKLSQEGY 313

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             LA G      +     G       +           +         +L  P   + K+
Sbjct: 314 RWLAQGTLYPDVIESA--GGEGAANIKSHHN-------VGGLPPDLKFELLEPFRYLFKD 364

Query: 199 SVRDLAREMGLD 210
            VR+LA  +GL 
Sbjct: 365 EVRELALLLGLP 376


>gi|149179803|ref|ZP_01858308.1| possible aluminum resistance protein [Bacillus sp. SG-1]
 gi|148851995|gb|EDL66140.1| possible aluminum resistance protein [Bacillus sp. SG-1]
          Length = 220

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ + +V  SGG DS+      K++  +V  VT   +N  +    +  C        AR 
Sbjct: 2  KNEKALVVFSGGQDSTTCLIWAKKEFKEVEAVT---FNYGQRHSFELDC--------ARE 50

Query: 79 VCDTINVSHYVFDYE 93
          + + +NV H+V D  
Sbjct: 51 IAEELNVRHHVLDMS 65


>gi|154173805|ref|YP_001408798.1| PP-loop family protein [Campylobacter curvus 525.92]
 gi|112803748|gb|EAU01092.1| PP-loop family protein [Campylobacter curvus 525.92]
          Length = 256

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79
           ++++ +SGG DS  +A +LK          +Q     K   +    S   G+D     R 
Sbjct: 27  KILLGLSGGKDSLALAHVLK---------HMQRVTPEKFEFKAVTLSYGMGEDYAYLTRH 77

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+   + H V D        +            +   C   +R ++   L +     G +
Sbjct: 78  CNEHGIEHEVIDSS------IFEISKDKIRKNSSF--CSFFSR-MRRGYLYTYALNGGFN 128

Query: 140 VLATGHYI 147
            LA  H++
Sbjct: 129 KLAIAHHL 136


>gi|194333893|ref|YP_002015753.1| argininosuccinate synthase [Prosthecochloris aestuarii DSM 271]
 gi|229889893|sp|B4S7R9|ASSY_PROA2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|194311711|gb|ACF46106.1| Argininosuccinate synthase [Prosthecochloris aestuarii DSM 271]
          Length = 401

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ +A SGG+D+SV+   LK   YD  ++ VT  L   ++    +    A      A   
Sbjct: 5   KIALAYSGGLDTSVMIKWLKDK-YDAEIVAVTGNLGQEKEVENLEEKAIATGASSFA--- 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                      D  + F  + I P   + A  E   P      R +    L+ +  +   
Sbjct: 61  ---------FLDLRKEFVESCIWPALKAGALYEDVYPLATALGRPLIAKALVDIALENNC 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
            +LA G                    +  D  R +  F       QL  +  PL   +  
Sbjct: 112 TMLAHG-----------------CTGKGNDQVRFEVTFASLAP--QLA-VLAPLREWEFT 151

Query: 197 KESV-RDLAREMGLDIADKSDS 217
                   A E  + ++    S
Sbjct: 152 SREAEIAYAMEHNIPVSATKKS 173


>gi|255019805|ref|ZP_05291881.1| NAD synthetase / Glutamine amidotransferase chain of NAD synthetase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970734|gb|EET28220.1| NAD synthetase / Glutamine amidotransferase chain of NAD synthetase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 548

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 20/134 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++  A+     G + V  + +                A   + DAR   
Sbjct: 283 VVLGLSGGVDSALTLAIAADALGPERVDALIM-----------PSPYTADMSIEDARAEA 331

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGE---TPLPCVDCNRTVKFSDLLSVTRQLG 137
            T+ V  ++      F             AG    T    +     ++ + L++ + + G
Sbjct: 332 ATLGVRSHLLPIHGLFAE--YQNSLRETFAGRAADTTEENLQA--RIRAALLMAFSNKFG 387

Query: 138 ADVLATGHYIRSRL 151
             +L TG+   + +
Sbjct: 388 PLLLTTGNKSETAV 401


>gi|298345148|ref|YP_003717835.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 43063]
 gi|304390735|ref|ZP_07372687.1| argininosuccinate synthase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235209|gb|ADI66341.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 43063]
 gi|304325618|gb|EFL92864.1| argininosuccinate synthase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 410

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 63/198 (31%), Gaps = 35/198 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+D+SV    +K   G D I V     +       +      Q   D   V 
Sbjct: 4   RVVLAYSGGLDTSVAIGWMKDKLGVDTIAV-----SVDVGQGGEDMDVIRQRALDCGAV- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  Y+ D ++ F     +P   +    +   P V   +R +    L+   +Q GA 
Sbjct: 58  -----EAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSALSRPLIAKHLVMAAKQFGAT 112

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198
            +A G                    +  D  R +  F              P+ D+  + 
Sbjct: 113 TMAHG-----------------CTGKGNDQVRFEVSFTSLAPDL---KCVSPIRDLSLQR 152

Query: 199 SV-RDLAREMGLDIADKS 215
            V    A E  L I    
Sbjct: 153 DVSIAYAEEHHLPIETTK 170


>gi|153812311|ref|ZP_01964979.1| hypothetical protein RUMOBE_02710 [Ruminococcus obeum ATCC 29174]
 gi|149831718|gb|EDM86805.1| hypothetical protein RUMOBE_02710 [Ruminococcus obeum ATCC 29174]
          Length = 291

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 30/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS ++A L +         ++V+ + +                   +   
Sbjct: 51  KIAVCISGGKDSMLMAKLFQELSRHGKKNFEVVFLVM------------NPGYNEINYQT 98

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +     +NV   V      F + +    AS   +     PC  C   ++   L S  ++
Sbjct: 99  IKDNAQILNVPITV------FESDIFNIVASEEQS-----PCYLC-ARMRRGYLYSKAKE 146

Query: 136 LGADVLATGHY 146
           LG + +A GH+
Sbjct: 147 LGCNKIALGHH 157


>gi|225020538|ref|ZP_03709730.1| hypothetical protein CORMATOL_00545 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946668|gb|EEG27877.1| hypothetical protein CORMATOL_00545 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 517

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 24/193 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +  +SGGVDS+V AAL++R  G  +  V     +       +        V       
Sbjct: 213 RAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVQTDFV------- 262

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGA 138
                     D  E F + +                 +          +L       +GA
Sbjct: 263 KATGAKLVTVDEREAFLSKLAGVTDPEAKRKAIGNEFIRSFERA-VGLVLADEPADTVGA 321

Query: 139 -DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            + L  G      +  G  G       +           +    +     L  PL  + K
Sbjct: 322 VEFLVQGTLYPDVVESG--GGAGTANIKSHHN-------VGGLPEDLEFQLVEPLRLLFK 372

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 373 DEVRAVGRELGLP 385


>gi|126180150|ref|YP_001048115.1| exsB protein [Methanoculleus marisnigri JR1]
 gi|189038925|sp|A3CXN3|QUEC_METMJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|125862944|gb|ABN58133.1| preQ(0) biosynthesis protein QueC [Methanoculleus marisnigri JR1]
          Length = 222

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 14/74 (18%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V  +SGG+DS+ +A + K  GYD++ +              G     ++   AR V 
Sbjct: 2  KKAVCLLSGGMDSTTLAYVAKDTGYDIVALHF----------TYGQRTEAKERECARAVA 51

Query: 81 DTINVSHYVFDYEE 94
            ++      D+ E
Sbjct: 52 KNLD----ALDFVE 61


>gi|147674336|ref|YP_001217758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|153817074|ref|ZP_01969741.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457]
 gi|227082366|ref|YP_002810917.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2]
 gi|229507683|ref|ZP_04397188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286]
 gi|262167735|ref|ZP_06035437.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27]
 gi|298500383|ref|ZP_07010188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757]
 gi|172047611|sp|A5F623|TILS_VIBC3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
          Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
          Full=tRNA(Ile)-lysidine synthetase
 gi|254789054|sp|C3LPP6|TILS_VIBCM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
          Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
          Full=tRNA(Ile)-lysidine synthetase
 gi|126512342|gb|EAZ74936.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457]
 gi|146316219|gb|ABQ20758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|227010254|gb|ACP06466.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2]
 gi|227014138|gb|ACP10348.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|229355188|gb|EEO20109.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286]
 gi|262023800|gb|EEY42499.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27]
 gi|297541076|gb|EFH77130.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757]
          Length = 440

 Score = 45.9 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSQVLLALLARGRDEFGWDVTAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|195344025|ref|XP_002038591.1| GM10539 [Drosophila sechellia]
 gi|194133612|gb|EDW55128.1| GM10539 [Drosophila sechellia]
          Length = 400

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGG+D+S +   L    Y+VI V                    +D   A +    
Sbjct: 6   VILAYSGGLDTSCILKWLLDKQYEVICV-------------LADVGQKEDFTAAEKKALK 52

Query: 83  INV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           I      V D ++ F    I P           Y  G +   PC+          L+ V 
Sbjct: 53  IGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISV-------ALIEVA 105

Query: 134 RQLGADVLATG 144
           R+ GA  LA G
Sbjct: 106 REYGAKYLAHG 116


>gi|157736934|ref|YP_001489617.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
 gi|157698788|gb|ABV66948.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
          Length = 375

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 41/206 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGGVDS+ +A L+   G   + V +   +NS  A            V +   V + 
Sbjct: 74  ILGLSGGVDSTYLAYLVVELGLRPLVVHIDTGWNSEIA------------VQNIENVVNI 121

Query: 83  INVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139
           +N+    +V D+EE      +     ++     P   +  +    F  LL+   ++    
Sbjct: 122 LNLDLHTHVIDWEE------MKDLQLAFFKASVPDCDIPQDHV--FPALLNKIAKENKIK 173

Query: 140 VLATGHYI-------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFP 191
            + +GH I       R+  Y  +D      + +       + Y  ++   +       FP
Sbjct: 174 HIVSGHNIVTEYILPRNWSYDSNDLTHILDIHKRFGKIPLKKYPRYSLFDRMFTYRWIFP 233

Query: 192 LGD--------MKKESVRD-LAREMG 208
           +            KE ++  +  ++G
Sbjct: 234 VKSHRFLYYVPYNKEEIKKFIQEKLG 259


>gi|284991820|ref|YP_003410374.1| NAD+ synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284065065|gb|ADB76003.1| NAD+ synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 611

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 22/88 (25%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V AAL     G D V GV L                +   + DA  + 
Sbjct: 344 VVLGLSGGIDSAVCAALAVDALGADRVYGVGL-----------PSRYSSEHSLADAEDLA 392

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSY 108
               + + V           I P   +Y
Sbjct: 393 RRTGLHYSVVP---------IAPMVDAY 411


>gi|300710433|ref|YP_003736247.1| asparagine synthase [Halalkalicoccus jeotgali B3]
 gi|299124116|gb|ADJ14455.1| asparagine synthase [Halalkalicoccus jeotgali B3]
          Length = 536

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + + +SGGVDS ++A  LKR GY+ I            +   G      +V  AR+V D 
Sbjct: 190 IAIPLSGGVDSRLIALHLKRAGYNNI-----------FTFTYGQ-PGESEVETARQVADD 237

Query: 83  INVSHYVFDYEERFRNAVI------VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           I +     +Y     +           F   +A     LP V     +K    L  + ++
Sbjct: 238 IGLEWEHVEYTPGKWSQWYDSDERRDYF--EFAGVSDALPPVGSWPALKV---LKESGRI 292

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER------DQSYFLFATTQQQLCDL 188
           G D +      ++   V +    R    R            D+ Y LF  T +    +
Sbjct: 293 GDDAIIVP--GQTVASVSEHVPARWATDRAASKGELVDHIFDEHYTLFRCTSETEARM 348


>gi|291166973|gb|EFE29019.1| NAD+ synthetase [Filifactor alocis ATCC 35896]
          Length = 249

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 41/191 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGG+DS+V   L+K    D  +GV +                + +D+  A+ + + 
Sbjct: 30  ILGISGGIDSAVAGFLIKMACPDNSLGVIM------------PIKSSEKDMEHAKELVEK 77

Query: 83  INVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            +++H   D  +      + V      ++      +   +    ++ + L ++   LG  
Sbjct: 78  ADLTHMTLDLTQAHSLMLSTVKETMQDAWREDFARISDANTRARLRMTGLYTIANNLGYL 137

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           V+ T +                             Y  + T          P+  +KK  
Sbjct: 138 VVGTDNAAEI-------------------------YTGYFTKYGDGGVDVLPIAHLKKSE 172

Query: 200 VRDLAREMGLD 210
           V + A  +G+ 
Sbjct: 173 VYEWAEYLGVP 183


>gi|225378080|ref|ZP_03755301.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM
           16841]
 gi|225210081|gb|EEG92435.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM
           16841]
          Length = 248

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 22/131 (16%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  ++ V +SGG DS       A L+R          ++++    +   G    G D+  
Sbjct: 22  EGDKIAVGISGGKDSLTLLYAMANLRR-------FYPKIFSLIAITVDLGY--EGFDLTP 72

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            + +C+ + V +++   E      +I  F     A     PC  C +  K   L    ++
Sbjct: 73  VKLLCEHLQVEYHIVSTEI---TKII--FNDKNEA----SPCSLCAKLRK-GALNQKIKE 122

Query: 136 LGADVLATGHY 146
           LG + +A  H+
Sbjct: 123 LGCNKVAYAHH 133


>gi|285019179|ref|YP_003376890.1| transcriptional regulator, exsb family protein [Xanthomonas
          albilineans GPE PC73]
 gi|283474397|emb|CBA16898.1| putative transcriptional regulator, exsb family protein
          [Xanthomonas albilineans]
          Length = 221

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+VV A+ +  GY V  +          S R G      ++  A RV   +
Sbjct: 5  VVLLSGGMDSAVVVAIARAQGYAVHAL----------SVRYGQ-RHTSELDAAARVASAL 53

Query: 84 N-VSHYVFD 91
          N V+H   +
Sbjct: 54 NVVAHKTVN 62


>gi|296109212|ref|YP_003616161.1| PP-loop domain protein [Methanocaldococcus infernus ME]
 gi|295434026|gb|ADG13197.1| PP-loop domain protein [Methanocaldococcus infernus ME]
          Length = 296

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 43/232 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            + +++ + +SGG DS V+A +L +  Y +V    L+     +  +        + +   
Sbjct: 42  KRGVKINIGISGGKDSLVMAHILNKLSYPEV---KLRCIFIHEGIEGF----RDKALRVV 94

Query: 77  RRVCDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++ C+   +   V   +E F    + +I      Y       PC  C    ++  L   +
Sbjct: 95  KKFCEKEGLELKVIYLKEEFNYTLDEMIT-LLKEYK------PCSICAVFRRY-LLNKYS 146

Query: 134 RQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           +   +D LA GH    + ++ L    +G  + I+       +D   F+            
Sbjct: 147 KD--SDYLAIGHNLDDHAQTILMNYIEGNIKNIIY----FGKDAEGFVKRIK-------- 192

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
            PL  + +E V+  A  + L+   +      C      Y   +K I   +  
Sbjct: 193 -PLKYVPEEEVKFYADLVKLEYQKEP-----CPYSSLSYRHKMKEIIKLLEK 238


>gi|86742063|ref|YP_482463.1| ExsB [Frankia sp. CcI3]
 gi|110816226|sp|Q2J7K8|QUEC_FRASC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|86568925|gb|ABD12734.1| preQ(0) biosynthesis protein QueC [Frankia sp. CcI3]
          Length = 236

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+ V A+  + G+    ++ +                  ++  ARRV   +
Sbjct: 18 VVLLSGGLDSATVLAIANQQGFACHALSFRY-----------GQRHEVELAAARRVASAL 66

Query: 84 N-VSHYVFD 91
            V H V D
Sbjct: 67 GVVRHVVVD 75


>gi|313886018|ref|ZP_07819756.1| protein ExsB [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924548|gb|EFR35319.1| protein ExsB [Porphyromonas asaccharolytica PR426713P-I]
          Length = 217

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 31/195 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A+SGGVDS+ +    +    +V                 GS    +++  A+ +C  +
Sbjct: 5   LIALSGGVDSTTLLYEYRE---EVACA---------VGFDYGSKHNARELAAAKAICREL 52

Query: 84  NVSHYVFDYE---ERFRNAVI----VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            + + +       E FR+ ++          Y+        V     +  S L  +    
Sbjct: 53  GIPYLIIPLAFIGEYFRSDLLLSGGEMQLGDYSEENMRSTVVPFRNGIMLSILAGLAESR 112

Query: 137 GADVLA-TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
               +    H+    +Y          M + +                    L  P   +
Sbjct: 113 DLQQVLIANHFGDHAIYPDCRESFVTPMGKAITAGTSNGV-----------KLVAPYTTL 161

Query: 196 KKESVRDLAREMGLD 210
            K  +      +G+ 
Sbjct: 162 TKAEIVARGTRLGVP 176


>gi|294626852|ref|ZP_06705444.1| ExsB protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          11122]
 gi|294665415|ref|ZP_06730703.1| ExsB protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          10535]
 gi|292598866|gb|EFF43011.1| ExsB protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          11122]
 gi|292604826|gb|EFF48189.1| ExsB protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          10535]
          Length = 224

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V AL +  G+ V  +          S R G      ++  A RV 
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVYAL----------SVRYGQ-RHTSELDAAARVA 50

Query: 81 DTIN-VSHYVFD 91
          D    V+H V D
Sbjct: 51 DAQGVVAHKVVD 62


>gi|193214830|ref|YP_001996029.1| GMP synthase [Chloroherpeton thalassium ATCC 35110]
 gi|226738419|sp|B3QYF4|GUAA_CHLT3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|193088307|gb|ACF13582.1| GMP synthase, large subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 514

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 59/195 (30%), Gaps = 36/195 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   + A+SGGVDSSV A L+ R  G  +  + +     RK    K            + 
Sbjct: 221 DQTAICAISGGVDSSVAAVLVSRALGDKLHCIFVDNGLLRKNEAEK-----------VQE 269

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               + ++    D  E F      V+ P       G T          +K  +      +
Sbjct: 270 KLKQLGLNLTTVDASELFLSRLKNVVSPERKRKIIGRT---------FIKVFEEHIHNEK 320

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      I S    G     +                +    ++    L  PL ++
Sbjct: 321 FLVQGTLYPDVIESVSVKGPSQTIKTHHN------------VGGLPKRMKLKLIEPLREL 368

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + + + + 
Sbjct: 369 FKDEVRKVGKLLDVP 383


>gi|72383131|ref|YP_292486.1| ExsB [Prochlorococcus marinus str. NATL2A]
 gi|110816242|sp|Q46I95|QUEC_PROMT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|72002981|gb|AAZ58783.1| preQ(0) biosynthesis protein QueC [Prochlorococcus marinus str.
           NATL2A]
          Length = 225

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 23/198 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS+  A +    G  VIG+          S   G     +++  A  +   +
Sbjct: 7   IALLSGGIDSATAACIAMEAGQKVIGL----------SFDYGQ-RHLKELQAAADLAKNL 55

Query: 84  NVSHYV---FDYEERFRNAVIVPF----ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           N+  ++    D      +++                 P   V    T+  +  LS+    
Sbjct: 56  NLEDHITIKIDLSSWGGSSLTDTSQAIPTQGIQKNTIPNTYVPGRNTIFVAIGLSLAEAR 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA+ +A G          D    R    +      + S  +          L  PL D +
Sbjct: 116 GANRIALGINAMDYSGYPDC---RPDYLKAYQELANLSSRVGREGNGI--KLWAPLLDWE 170

Query: 197 KESVRDLAREMGLDIADK 214
           K  + + A  + + I   
Sbjct: 171 KTKIFEEALRLKIPIEKT 188


>gi|13541848|ref|NP_111536.1| NAD synthetase [Thermoplasma volcanium GSS1]
 gi|25090781|sp|Q979W4|NADE_THEVO RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|14325284|dbj|BAB60188.1| NH(3) -depenent NAD + synthetase [Thermoplasma volcanium GSS1]
          Length = 242

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 46/200 (23%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K   D + V+ +SGG+DSSV   +L +           L+ + KA     +     D 
Sbjct: 15  LRKIIADRKAVIGISGGIDSSVTLGILSK---------FFLHENIKAVFMPDATTPKSDY 65

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPF---ASSYAAGETPLPCVDCNRTVKFSDLL 130
            D   +  T  V +   + +      ++  F    S+   G            ++   L 
Sbjct: 66  DDVDVLASTFGVKYSTVNIQ-----NIVDTFSKTLSAVDKGAIGNI----KSRIRMIVLY 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                     +  G  + +          R  +      +    Y       +       
Sbjct: 117 YFAN------IYNGIVVGT--------TNRTELLLGYYTK----YGDGGCDVE------- 151

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+  + K  + ++AR +G+ 
Sbjct: 152 PIEHLYKRDIYEIARLLGVP 171


>gi|19111975|ref|NP_595183.1| argininosuccinate synthase (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|6685242|sp|O94354|ASSY_SCHPO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|3947869|emb|CAA22280.1| argininosuccinate synthase (predicted) [Schizosaccharomyces pombe]
          Length = 410

 Score = 45.5 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            R V+A SGG+D+S + A L  +G++VI   +                  +D   AR   
Sbjct: 6   KRCVLAYSGGLDTSCILAWLIEEGWEVI-CYMAN------------VGQEEDWDAAREKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGET 113
             +     YV D  E F N  ++P A + A  E 
Sbjct: 53  LKVGAKKVYVEDLREEFINDTVIPAAQANAIYEN 86


>gi|296131746|ref|YP_003638993.1| tRNA(Ile)-lysidine synthetase [Thermincola sp. JR]
 gi|296030324|gb|ADG81092.1| tRNA(Ile)-lysidine synthetase [Thermincola potens JR]
          Length = 471

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAA-----LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +VVV +SGG DS V  A     L K        +T+ +      +       A  D    
Sbjct: 20  KVVVGVSGGPDS-VALAHILTRLAKE-----FRLTIHI---GHLNHMFRGKEAELDAASV 70

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R+ + + +   V       R  V    +    + +         R ++++    +  ++
Sbjct: 71  ARLAEKLGLPCTV------ERIDVPAYLSEHRVSAQ------AGARYIRYAFFEKLADEV 118

Query: 137 GADVLATGHYI 147
           GA+ +ATGH+ 
Sbjct: 119 GANRIATGHHA 129


>gi|300770183|ref|ZP_07080062.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762659|gb|EFK59476.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 394

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S     L +  G +V  V   + N+   S  + +    +        
Sbjct: 2   KKVVLAFSGGLDTSFCCIYLTRDLGLEVHSV---IVNTGGFSAEELATIEKRAYE----- 53

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              + V  H V D  E +    I              P  V   R  + + + +  +++G
Sbjct: 54  ---LGVKSHAVVDETENYYRDSIKYLIFGNVLKNATYPLSVSAERVCQATAIANYAKKIG 110

Query: 138 ADVLATG 144
           A+ +A G
Sbjct: 111 AECVAHG 117


>gi|284033881|ref|YP_003383812.1| GMP synthase large subunit [Kribbella flavida DSM 17836]
 gi|283813174|gb|ADB35013.1| GMP synthase, large subunit [Kribbella flavida DSM 17836]
          Length = 518

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V+ A+SGGVDS+V AAL+ +  G  +  V             + +  + Q   D   
Sbjct: 218 DKQVLCALSGGVDSAVAAALVSKAIGDQLTCVY-------VDHGLQRAGESDQIEKDFVA 270

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V         V + E++F +A+                 +     ++     +  R+L A
Sbjct: 271 VT---GTRLEVVEVEQQFLSALAGVTDPEQKRK------IVGREFIR--TFEATARKLDA 319

Query: 139 D-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           +  +           V + G             +            Q   L  PL  + K
Sbjct: 320 ERHIEFLVQGTLYPDVVESGGG-----TGAANIKSHHNVGGLPDDLQFS-LIEPLRTLFK 373

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +GL 
Sbjct: 374 DEVRELGLALGLP 386


>gi|227538644|ref|ZP_03968693.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241563|gb|EEI91578.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 394

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S     L +  G +V  V   + N+   S  + +    +        
Sbjct: 2   KKVVLAFSGGLDTSFCCIYLTRDLGLEVHSV---IVNTGGFSAEELATIEKRAYE----- 53

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              + V  H V D  E +    I              P  V   R  + + + +  +++G
Sbjct: 54  ---LGVKSHAVVDETENYYRDSIKYLIFGNVLKNATYPLSVSAERVCQATAIANYAKKIG 110

Query: 138 ADVLATG 144
           A+ +A G
Sbjct: 111 AECVAHG 117


>gi|26553599|ref|NP_757533.1| cell cycle protein MesJ [Mycoplasma penetrans HF-2]
 gi|61216654|sp|Q8EWQ7|TILS_MYCPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|26453605|dbj|BAC43937.1| predicted cell cycle protein MesJ [Mycoplasma penetrans HF-2]
          Length = 295

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + ++A+SGG DS    ALL +  + V  V    Y+ R+ S          D    R  
Sbjct: 2   KHKYLIAVSGGPDS---MALLNKKRHLVEAVCHVNYHDREDSDN--------DEKIVRDY 50

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C   N+  +VFD     ++ V        +  +         R +++     ++++LG  
Sbjct: 51  CKKYNLKLFVFD---THKDDV--------SKYKDINNLQTWYREIRYDFFEKISQELGIK 99

Query: 140 VLATGH 145
            +   H
Sbjct: 100 KILIAH 105


>gi|325282766|ref|YP_004255307.1| Argininosuccinate synthase [Deinococcus proteolyticus MRP]
 gi|324314575|gb|ADY25690.1| Argininosuccinate synthase [Deinococcus proteolyticus MRP]
          Length = 420

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+S++   L +  GYDV+  T                  G +V +AR   
Sbjct: 6   KIVLAYSGGLDTSIIIKWLQQERGYDVVAFT-------------ADLGQGAEVDEAREKA 52

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLSV 132
                VS Y  D  E F    + P   S       Y  G +        R +    ++ +
Sbjct: 53  IRTGAVSAYALDLREEFVRDYVFPMMRSSALYEGYYLLGTSIA------RPLIAKKMVEL 106

Query: 133 TRQLGADVLATG 144
             + GA  ++ G
Sbjct: 107 AEKEGAVAVSHG 118


>gi|290769934|gb|ADD61703.1| putative protein [uncultured organism]
          Length = 393

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 28/130 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-RRV- 79
           ++ V +SGG DS ++A L +            L    K               +A R V 
Sbjct: 154 KIAVCISGGKDSMLMAKLFQE-----------LKRHNKFPFELVFLVMDPGYNEANRAVI 202

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 + +   V      F   +     + Y   ++  PC  C   ++   L S  ++L
Sbjct: 203 EHNAKLLGIPITV------FETEIFD---AVYNVEKS--PCYLC-ARMRRGYLYSKAKEL 250

Query: 137 GADVLATGHY 146
           G + +A GH+
Sbjct: 251 GCNKIALGHH 260


>gi|282892089|ref|ZP_06300564.1| hypothetical protein pah_c207o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497984|gb|EFB40328.1| hypothetical protein pah_c207o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 544

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
               + +SGG+DS++VA +     G+ +V+GV +                +   + DA++
Sbjct: 288 KHACLGLSGGIDSALVACIAVEALGHQNVLGVAM-----------PSRYSSTGSLEDAKK 336

Query: 79  VCDTINVSHYVFDYEERFR 97
           +   + +       E  F+
Sbjct: 337 LAKNLQIELLNIPIEGPFQ 355


>gi|257877908|ref|ZP_05657561.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257812074|gb|EEV40894.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 466

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 54/224 (24%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L ++D +   K  R ++A+S GVDS V   LL+        +  QL+   +     G  
Sbjct: 9   QLTAIDPE---KKRRFLLAVSTGVDSMV---LLQ--------IFCQLFPEMQKEPCFGVA 54

Query: 68  CAGQDVYDA--------RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--- 116
                +  A        R+ C    +  Y     ER                    P   
Sbjct: 55  HVNHQLRPASAKEAAFLRQYCQERGIPFY-----ERCWE----------------NPPET 93

Query: 117 -CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
                 R  +++    V  Q G DVL T H+   ++        R    R     + Q  
Sbjct: 94  GVEASARNFRYTFFADVMSQEGYDVLLTAHHSDDQVETMLMKMMREGRLRSAGGMKQQQP 153

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
           F           L  PL  + K ++ D A+   +   +   + +
Sbjct: 154 FHTGI-------LLRPLLTVSKAAIYDYAQAQQIPYFEDESNHE 190


>gi|225419721|ref|ZP_03762024.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme
           DSM 15981]
 gi|225041631|gb|EEG51877.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme
           DSM 15981]
          Length = 240

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 30/135 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD------ 72
           +  RV + MSGG DS  +   L           LQ    +   KR   C    D      
Sbjct: 22  EGDRVALGMSGGKDSLTLLYALS---------HLQ----KFYPKRFDLCAITVDLGLGNL 68

Query: 73  -VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +   R +C+   V + V   +       I              PC  C +  K   L +
Sbjct: 69  ELDPIRALCEEFAVPYEVVPTQ-------IGKVLFETRKES--NPCSLCAKMRK-GALNN 118

Query: 132 VTRQLGADVLATGHY 146
              + G + +A  H+
Sbjct: 119 KALEFGCNKVAYAHH 133


>gi|149911763|ref|ZP_01900368.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Moritella sp. PE36]
 gi|149805151|gb|EDM65172.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Moritella sp. PE36]
          Length = 404

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 44/142 (30%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++VVA SGG+D+SV+   L+             Y+         +C     V D  +  
Sbjct: 8   KKIVVAYSGGLDTSVILPWLQE-----------NYD---------NCEIIAFVADVGQGA 47

Query: 81  DTI-NV----------SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNR 122
           + +  +            YV D ++      I P          +Y  G +    +    
Sbjct: 48  EELEGIEAKALASGASECYVVDLKDELVANYIYPTLKTGAVYEGTYLLGTSMARPIIAKA 107

Query: 123 TVKFSDLLSVTRQLGADVLATG 144
            V       + R++GAD L  G
Sbjct: 108 QV------EIARKVGADALCHG 123


>gi|327540919|gb|EGF27477.1| trans-regulatory protein ExsB [Rhodopirellula baltica WH47]
          Length = 245

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 33/201 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV +SGG+DS+   A+ +  G++V  ++ +                   +  A +   
Sbjct: 18  KAVVLLSGGLDSATCVAIARDQGFEVHAISFRYGQRHDGE-----------LDRAAKQAS 66

Query: 82  TINVSHYVF---DYEERFRNAVIVPFASSYA-------AGETPLPCVDCNRTVKFSDLLS 131
            + V  +     D  +   +A++    +          AG+ P+  V    T+  S  L+
Sbjct: 67  LMGVVTHRVIDIDLAQLGGSALVDSSIAVPKSDHVDKIAGDIPVTYVPARNTIFLSYALA 126

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS----YFLFATTQQQLCD 187
           V   LG+  +  G          D        CRP  +   Q+            +    
Sbjct: 127 VAETLGSRDIFIGVNALDYSGYPD--------CRPEFINAFQTMARLATKAGVEDEHSLT 178

Query: 188 LRFPLGDMKKESVRDLAREMG 208
           +  PL    K  +     E+G
Sbjct: 179 IHTPLLHWTKAEIIQRGIELG 199


>gi|296268616|ref|YP_003651248.1| GMP synthase large subunit [Thermobispora bispora DSM 43833]
 gi|296091403|gb|ADG87355.1| GMP synthase, large subunit [Thermobispora bispora DSM 43833]
          Length = 517

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 57/199 (28%), Gaps = 32/199 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AA++ R  G  +  V            RKG     +     R 
Sbjct: 215 DGRAICGLSGGVDSAVAAAIVHRAIGDRLTCVF-----VDHGLLRKGEAEQVE-----RD 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK----FSDLLSVTR 134
                 V   V D  +RF                  +   +  R +             R
Sbjct: 265 FVAATGVKLRVVDASDRF------------LKALAGVRDPEEKRKIIGREFIRVFEDEAR 312

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLG 193
            + A       ++       D  +                  L     + L      PL 
Sbjct: 313 AIRATAGGPVDFLVQGTLYPDVVESGHGTGTANIKSHHNVGGL----PEDLKFTLVEPLR 368

Query: 194 DMKKESVRDLAREMGLDIA 212
            + K+ VR    E+GL  A
Sbjct: 369 TLFKDEVRRAGEELGLPPA 387


>gi|302877062|ref|YP_003845695.1| ExsB family protein [Clostridium cellulovorans 743B]
 gi|307687753|ref|ZP_07630199.1| ExsB family protein [Clostridium cellulovorans 743B]
 gi|302579919|gb|ADL53931.1| ExsB family protein [Clostridium cellulovorans 743B]
          Length = 261

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 53/216 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGGVDS+ +  + K   G +V  VT+                   ++ +A+ + 
Sbjct: 19  KVVIAFSGGVDSTFLLRVAKDALGDNVKAVTI-----------LSPYIPRWEIAEAKELV 67

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLG 137
             + V H + +             A  Y       P   C  C   V FS +LSV ++ G
Sbjct: 68  KELGVKHEIIEAPII--------EAIKY------NPEDRCYLCKTAV-FSMILSVAKEQG 112

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D +  G          DD    R   R +     +S  L              +    K
Sbjct: 113 YDCVVDG-------TNFDDISDYRPGLRALKELDVKSPLL--------------VCKFTK 151

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233
             +R  ++E+ L+  DK      C + +  Y + +K
Sbjct: 152 AEIRACSKELNLNTWDKPPY--ACLLTRIPYGNQLK 185


>gi|228984515|ref|ZP_04144692.1| hypothetical protein bthur0001_12200 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229155007|ref|ZP_04283121.1| hypothetical protein bcere0010_12010 [Bacillus cereus ATCC 4342]
 gi|228628565|gb|EEK85278.1| hypothetical protein bcere0010_12010 [Bacillus cereus ATCC 4342]
 gi|228775218|gb|EEM23607.1| hypothetical protein bthur0001_12200 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 223

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --ATEIAKELGIKHTVLDMS 68


>gi|225575528|ref|ZP_03784138.1| hypothetical protein RUMHYD_03620 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037254|gb|EEG47500.1| hypothetical protein RUMHYD_03620 [Blautia hydrogenotrophica DSM
           10507]
          Length = 512

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 40/198 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V+ A+SGGVDSSV A ++ +  G  +  V     +     K +G         +   V 
Sbjct: 217 KVLCALSGGVDSSVAAVMMSKAVGDQLTCVF---VDHGLLRKNEGD--------EVEAVF 265

Query: 81  DTIN---VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  ++    + ++RF + +                 +     ++        +++G
Sbjct: 266 GPQGPYKLNFIRVNAQQRFYDKLKG--VEEPEKKRK----IIGEEFIRV--FEEEAKKIG 317

Query: 138 A-DVLATGHYIRSRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           A D L  G      +  G  G+    +       +    D              ++  PL
Sbjct: 318 AVDYLVQGTIYPDVVESGLGGESAVIKSHHNVGGLPECVD------------FKEIIEPL 365

Query: 193 GDMKKESVRDLAREMGLD 210
            D+ K+ VR    E+G+ 
Sbjct: 366 RDLFKDEVRKAGLELGIP 383


>gi|222528655|ref|YP_002572537.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455502|gb|ACM59764.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 456

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 46/152 (30%), Gaps = 31/152 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV---VAALLKRDGY--DVIGVTLQLY 55
           M   E  + N        K  +V++  SGGVDS V       LK   Y  D+    L   
Sbjct: 1   MEFLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCILRLKDK-YNLDITVAHLNHM 59

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGET 113
              +A           D      +C   N+       D  +  +        S   AG +
Sbjct: 60  LRPEADD---------DEKFVIEICKRYNIKCITRKVDVAKLKKEK----GLSEEEAGRS 106

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                      ++S    V  +L  D +  GH
Sbjct: 107 A----------RYSFFYEVAEELNIDRILLGH 128


>gi|284006754|emb|CBA72011.1| glutamine-dependent NAD( ) synthetase [Arsenophonus nasoniae]
          Length = 540

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++  A+     G D V  V +                A   ++DAR   
Sbjct: 283 VILGLSGGIDSALTLAIAVDALGKDNVQAVMM-----------PFKYTAEISIHDAREQA 331

Query: 81  DTINVSHYVFDYEERF 96
             + +   +   E  +
Sbjct: 332 TLLGIEFAIVSIEAMY 347


>gi|261377822|ref|ZP_05982395.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685]
 gi|269146124|gb|EEZ72542.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685]
          Length = 457

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
             +     ++ VA+SGG+DS V+  LL    K+ G+    + +            G    
Sbjct: 36  FPQGLDGQKIAVALSGGLDSVVLLHLLVCAGKKGGFIPEALHIH----------HGLSPH 85

Query: 70  GQDVYD-ARRVCDTINVSHYVF 90
                D  R  CDT+ V     
Sbjct: 86  ADSWADFCRNYCDTLGVRLETV 107


>gi|219850958|ref|YP_002465390.1| exsB protein [Methanosphaerula palustris E1-9c]
 gi|254764360|sp|B8GJL3|QUEC_METPE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|219545217|gb|ACL15667.1| exsB protein [Methanosphaerula palustris E1-9c]
          Length = 221

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V  +SGG+DSS +A + K  GY +  + L            G     +++  A  + 
Sbjct: 1  MKAVCLLSGGMDSSTLAYVAKDMGYHIHALHL----------NYGQRTEKKELQSATAIA 50

Query: 81 DTI 83
           ++
Sbjct: 51 RSL 53


>gi|322801639|gb|EFZ22280.1| hypothetical protein SINV_80105 [Solenopsis invicta]
          Length = 411

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-AR 77
              +V++A SGG+D+S +   LK  GY VI                G       + D A 
Sbjct: 4   SKRKVILAYSGGLDTSCILLWLKEKGYQVIA----------YVANIGQKEDFDAIRDKAL 53

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGE-TPLPCVDCNRTVKFSDL 129
           +V     V   + D  E F  + + P  +        Y  G     PC+          L
Sbjct: 54  KVGA---VKVVIDDVREVFVTSYVWPAVACGLLYEGRYLLGTAIARPCISQG-------L 103

Query: 130 LSVTRQLGADVLATG 144
           + V +  GA V+A G
Sbjct: 104 IKVAKAEGASVIAHG 118


>gi|262306041|gb|ACY45613.1| gln amidotransferase [Ephemerella inconstans]
          Length = 197

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 19/80 (23%)

Query: 22  RVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +V++ +SGGVDS+V AALL     +     VI V +     RK   +K            
Sbjct: 45  KVLLLVSGGVDSTVCAALLNKALPQDQ---VIAVHIDNGFMRKGESQKVMQSL------- 94

Query: 77  RRVCDTINVSHYVFDYEERF 96
               + I +   + +  ++F
Sbjct: 95  ----EKIGLRPKIVNAAQQF 110


>gi|265762798|ref|ZP_06091366.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16]
 gi|263255406|gb|EEZ26752.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16]
          Length = 435

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+V +SGG DS V    LL   GY         +   K S R        D    RR
Sbjct: 19  NDKVLVTLSGGADS-VALLRLLLSMGYTCEAAHCNFHLRDKESDR--------DEAFVRR 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    V  +            I  F ++  A +  +      R +++    ++ RQ  A
Sbjct: 70  LCHESGVLLH------------IEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREA 117

Query: 139 DVLATGHY 146
            V+AT H+
Sbjct: 118 SVIATAHH 125


>gi|253563316|ref|ZP_04840773.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5]
 gi|251947092|gb|EES87374.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5]
          Length = 435

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+V +SGG DS V    LL   GY         +   K S R        D    RR
Sbjct: 19  NDKVLVTLSGGADS-VALLRLLLSMGYTCEAAHCNFHLRDKESDR--------DEAFVRR 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    V  +            I  F ++  A +  +      R +++    ++ RQ  A
Sbjct: 70  LCHESGVLLH------------IEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREA 117

Query: 139 DVLATGHY 146
            V+AT H+
Sbjct: 118 SVIATAHH 125


>gi|239787512|emb|CAX83982.1| Argininosuccinate synthase [uncultured bacterium]
          Length = 402

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +VI  T                  G+++  AR+ 
Sbjct: 6   KKVVLAYSGGLDTSIILRWLQDTYGCEVITFT-------------ADIGQGEELEPARKK 52

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + + +   ++ D  E F    + P           Y  G +    +   R +       
Sbjct: 53  AEAMGIKQIFIEDLREEFVRDYVFPMFRANTVYEGCYLLGTSIARPLIAKRQI------E 106

Query: 132 VTRQLGADVLATG 144
           +    GAD ++ G
Sbjct: 107 IAIATGADAVSHG 119


>gi|269928591|ref|YP_003320912.1| thiamine biosynthesis/tRNA modification protein ThiI [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787948|gb|ACZ40090.1| thiamine biosynthesis/tRNA modification protein ThiI [Sphaerobacter
           thermophilus DSM 20745]
          Length = 404

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 61/212 (28%), Gaps = 45/212 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RVVV MSGG DS V    + + G +V  +    Y   +++           +     +  
Sbjct: 181 RVVVLMSGGFDSPVAVYRMMKRGCEVTLLHCHAYPFVRSTS----------IEKVVELAQ 230

Query: 82  TI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +      +   +           I       A    P   V   R +      ++  + 
Sbjct: 231 HLGRHQPGMRLVIVP---------IGQAQRQIAIATEPEIRVVLYRRLMMRIAEAIAERE 281

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  + TG  +        D        R +                    +  PL    
Sbjct: 282 GAKAIVTGESLGQVSSQTLDN------LRAIGA-------AVKLP------ILRPLIGFD 322

Query: 197 KESVRDLAREMGLDIADKSDSQDIC--FVQQG 226
           KE +   A+ +G +   +    D C  FV + 
Sbjct: 323 KEEILAEAKRIGTEPISRVPDDDCCTVFVPRH 354


>gi|228990440|ref|ZP_04150405.1| hypothetical protein bpmyx0001_12020 [Bacillus pseudomycoides DSM
          12442]
 gi|228996541|ref|ZP_04156180.1| hypothetical protein bmyco0003_11280 [Bacillus mycoides Rock3-17]
 gi|229004191|ref|ZP_04161992.1| hypothetical protein bmyco0002_11560 [Bacillus mycoides Rock1-4]
 gi|228757052|gb|EEM06296.1| hypothetical protein bmyco0002_11560 [Bacillus mycoides Rock1-4]
 gi|228763173|gb|EEM12081.1| hypothetical protein bmyco0003_11280 [Bacillus mycoides Rock3-17]
 gi|228768966|gb|EEM17564.1| hypothetical protein bpmyx0001_12020 [Bacillus pseudomycoides DSM
          12442]
          Length = 223

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+       +   +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAMQQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AADIAKELGIKHTVLDMS 68


>gi|60680868|ref|YP_211012.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC
           9343]
 gi|60492302|emb|CAH07067.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC
           9343]
          Length = 435

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V+V +SGG DS V    LL   GY         +   K S R        D    RR
Sbjct: 19  NDKVLVTLSGGADS-VALLRLLLSMGYTCEAAHCNFHLRDKESDR--------DEAFVRR 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C    V  +            I  F ++  A +  +      R +++    ++ RQ  A
Sbjct: 70  LCHESGVLLH------------IEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREA 117

Query: 139 DVLATGHY 146
            V+AT H+
Sbjct: 118 SVIATAHH 125


>gi|88858568|ref|ZP_01133210.1| thiamine biosynthesis protein ThiI [Pseudoalteromonas tunicata D2]
 gi|88820185|gb|EAR29998.1| thiamine biosynthesis protein ThiI [Pseudoalteromonas tunicata D2]
          Length = 485

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 38/218 (17%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
            +   T L         ++  V+  MSGG DS V    + R G     +   L     A+
Sbjct: 163 YIVTETHLGIAGFPLPTQED-VLSLMSGGFDSGVATYQMIRKGARTHFLFFNL---GGAA 218

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
              G   A   ++D  +   T  V     D+E      V+     +    +     V   
Sbjct: 219 HEIGVKQASYFLWD--KYSSTHKVKFISVDFEP-----VVAEILENVENSQMG--VVLKR 269

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
             ++   L+   +Q G D L TG  +                         Q+       
Sbjct: 270 MMMRAGSLV--AKQFGIDALVTGESLGQVSS--------------------QTLANLNVI 307

Query: 182 QQQLCDLRF-PLGDMKKESVRDLAREMGLDIADKSDSQ 218
            Q    L   PL    K+ + ++AR++G   ++ ++S 
Sbjct: 308 DQVTDTLILRPLIQYDKQEIINIARQIG--TSEMAESM 343


>gi|332139939|ref|YP_004425677.1| argininosuccinate synthase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549961|gb|AEA96679.1| argininosuccinate synthase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 401

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S +   LK + G +V+               +      + +      
Sbjct: 5   KKIVLAYSGGLDTSAIIPWLKENYGCEVVA----FAADVGQGDEELEGLHEKAIASGASE 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
           C       ++ D +E F +  I P           Y  G +    V     V       +
Sbjct: 61  C-------HIVDLKEEFVSEYIFPTITTGAVYEGEYLLGTSMARPVIAKAQV------EI 107

Query: 133 TRQLGADVLATG 144
            R++GAD L  G
Sbjct: 108 ARKVGADALCHG 119


>gi|291536194|emb|CBL09306.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Roseburia intestinalis M50/1]
          Length = 244

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
              ++ + +SGG DS  +   L          +D++ VT+ L                 D
Sbjct: 22  SGDKIAIGISGGKDSLTLLYALSGLRRFYPQKFDLVAVTVDL------------GYENFD 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +    ++C  ++V +++ + E       I          E P  C  C +  K   L   
Sbjct: 70  LTAVSKLCHDLDVPYHIVNTE-------IAKILFE-ERNEKP-TCSLCAKMRK-GALNQA 119

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A  H+
Sbjct: 120 IKELGCNKVAYAHH 133


>gi|262306077|gb|ACY45631.1| gln amidotransferase [Machiloides banksi]
          Length = 198

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQL 54
          + +V++ +SGGVDS+V  ALL +   +  VIGV +  
Sbjct: 43 NSKVLLLVSGGVDSTVCGALLHKALPEDQVIGVHIDN 79


>gi|240146321|ref|ZP_04744922.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257201562|gb|EEU99846.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 244

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
              ++ + +SGG DS  +   L          +D++ VT+ L                 D
Sbjct: 22  SGDKIAIGISGGKDSLTLLYALSGLRRFYPQKFDLVAVTVDL------------GYENFD 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +    ++C  ++V +++ + E       I          E P  C  C +  K   L   
Sbjct: 70  LTAVSKLCHDLDVPYHIVNTE-------IAKILFE-ERNEKP-TCSLCAKMRK-GALNQA 119

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A  H+
Sbjct: 120 IKELGCNKVAYAHH 133


>gi|88858470|ref|ZP_01133112.1| argininosuccinate synthase [Pseudoalteromonas tunicata D2]
 gi|88820087|gb|EAR29900.1| argininosuccinate synthase [Pseudoalteromonas tunicata D2]
          Length = 402

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S +   LK + + +VI                G      +  +A+ +
Sbjct: 5   KKVVLAYSGGLDTSAIVPWLKENYHCEVIAF----------VADVGQGAEELEGVEAKAI 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   Y+ D +E      I P          +Y  G +    +     V       +
Sbjct: 55  ASGAS-ECYIVDLKEEMVAEYIYPTLKTGAIYEGTYLLGTSMARPIIAKAQV------EI 107

Query: 133 TRQLGADVLATG 144
            R++GAD LA G
Sbjct: 108 ARKVGADALAHG 119


>gi|330816541|ref|YP_004360246.1| argininosuccinate synthase [Burkholderia gladioli BSR3]
 gi|327368934|gb|AEA60290.1| argininosuccinate synthase [Burkholderia gladioli BSR3]
          Length = 404

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K   +++A SGG+D+S     LK+                + +    +    +D    ++
Sbjct: 2   KPKHILLAYSGGLDTSTALHFLKQQ------------FDCRVTAYCANLGQKEDWERMKK 49

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE------TPLPCVDCNRTVKFSDLLS 131
                      + D  E F    + P   + AA E      TPL      R      L  
Sbjct: 50  RAAIAGADELVIADLRETFIRDYVFPALKANAAYERDYLLGTPLA-----RPAIVKGLTD 104

Query: 132 VTRQLGADVLATG 144
                  D L+ G
Sbjct: 105 YALAHDVDTLSHG 117


>gi|160880393|ref|YP_001559361.1| PP-loop domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429059|gb|ABX42622.1| PP-loop domain protein [Clostridium phytofermentans ISDg]
          Length = 242

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---ARR 78
           ++ + +SGG DS  +   L   G       L+ +  +K +    +   G D +D      
Sbjct: 25  KIAIGISGGKDSLTLLYAL--AG-------LRRFYPKKFTLEAITVSLGFDNFDTSKIAA 75

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C  ++V++ V + +       I P            PC  C +  K        ++LG 
Sbjct: 76  LCKELDVNYTVVNTD-------IAPIIFETRKES--NPCSLCAKMRK-GAFNDKAKELGC 125

Query: 139 DVLATGHY 146
           +  A  H+
Sbjct: 126 NKSAYAHH 133


>gi|27378891|ref|NP_770420.1| NAD synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27352040|dbj|BAC49045.1| NAD synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 585

 Score = 45.5 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G D V GV L                A   + DA  + 
Sbjct: 296 VLLGISGGIDSALCAAIAVDALGADQVHGVML-----------PYRYTAASSIADAGELA 344

Query: 81  DTINVSHYVFDYEE 94
             + + + V    E
Sbjct: 345 GHLGIRYEVLPIAE 358


>gi|330468683|ref|YP_004406426.1| asparagine synthase [Verrucosispora maris AB-18-032]
 gi|328811654|gb|AEB45826.1| asparagine synthase (glutamine-hydrolyzing) [Verrucosispora maris
           AB-18-032]
          Length = 536

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V V +SGG+DSS+V     +   D + VT                    DV  ARR+
Sbjct: 227 DLTVGVVLSGGLDSSLVLLHAAQRHPDCVAVT-------------VGVPDSPDVAYARRL 273

Query: 80  CDTINVSHYVFDYEER 95
              + V H V +   R
Sbjct: 274 AGELGVRHEVVELRPR 289


>gi|331265895|ref|YP_004325525.1| ExsB family protein; Adenosine nucleotide binding superfamily of
           proteins [Streptococcus oralis Uo5]
 gi|326682567|emb|CBZ00184.1| ExsB family protein; Adenosine nucleotide binding superfamily of
           proteins [Streptococcus oralis Uo5]
          Length = 217

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYKTVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +QLG 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDMEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQLGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|302670988|ref|YP_003830948.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
 gi|302395461|gb|ADL34366.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
          Length = 287

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 32/144 (22%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRDG---YDVIGVTLQLYNSRKASK 62
           +N+ DL ++    ++ V +SGG DS ++A L   L R G   ++VI + +          
Sbjct: 32  INTYDLIQD--GDKIAVCISGGKDSMLLAKLFQELARHGKHNFEVIFLAM---------- 79

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                 +  +  +  R  + +N+   +      F + +          G +  PC  C  
Sbjct: 80  --NPGYSDANYQNILRNAELMNIPLTI------FESDIFDVTT---KVGGS--PCYLC-A 125

Query: 123 TVKFSDLLSVTRQLGADVLATGHY 146
            ++   L S  ++LG + +A GH+
Sbjct: 126 RMRRGALYSKAQELGCNKIALGHH 149


>gi|312126480|ref|YP_003991354.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776499|gb|ADQ05985.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 235

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 48/215 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--------KRDGYDVIGVTLQLYNSRKASKRK 64
           D +   +  ++ V +S G DS  +   L        K+  +DV+ +T+ +          
Sbjct: 14  DFEMIEEGDKIAVGVSAGKDSLTMLYTLSFMRRFYPKK--FDVVAITIDMGFEGM----- 66

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D    +  CD I+V  ++     + +  V               PC  C   +
Sbjct: 67  -------DFLPIKEFCDKIDVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANL 109

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +   L S  + LG + +A GH++       DD      +    +           + +  
Sbjct: 110 RRGILNSTAKSLGCNKVALGHHL-------DDVVETFFLSLFFEGR-----IYCFSPKTY 157

Query: 185 LCD----LRFPLGDMKKESVRDLAREMGLDIADKS 215
           L         P+  +K+  +R  A+ + L +    
Sbjct: 158 LDRTQITTIRPMIYLKEHDLRSAAKRLELPVITNP 192


>gi|317132595|ref|YP_004091909.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Ethanoligenens harbinense YUAN-3]
 gi|315470574|gb|ADU27178.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Ethanoligenens harbinense YUAN-3]
          Length = 391

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 43/192 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           R  V +SGG+DS V A ++ R G  V  V         AS    S  A   V D  ++  
Sbjct: 180 RAAVLISGGIDSPVAAYMMARRGMSVCAVHF-------ASPPYTSPRAKAKVLDLLKIVS 232

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
             +  ++ +V  +    +  +       +                 F+ LL       A 
Sbjct: 233 AYSGPIACFVVPFTAL-QEQIRAHCKEEF-----------------FTILLRRFMMRAAA 274

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL---RFPLGDMK 196
            +A             +G+    +     + +  S  + A T  Q         PL  M 
Sbjct: 275 RIA-------------EGQDCAALITGESIGQVASQTIEAITCTQAASTLPVLRPLIGMD 321

Query: 197 KESVRDLAREMG 208
           KE +  +AR + 
Sbjct: 322 KEEIIRVARRID 333


>gi|289192958|ref|YP_003458899.1| hypothetical protein MFS40622_1490 [Methanocaldococcus sp.
           FS406-22]
 gi|288939408|gb|ADC70163.1| conserved hypothetical protein [Methanocaldococcus sp. FS406-22]
          Length = 197

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 17/98 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M V V  SGG DSS+ AA+LK+ GY    +T+                       A+   
Sbjct: 1   MDVYVLFSGGKDSSLSAAILKKLGYSPHLITINF-------------GVIPSYELAQETA 47

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
             +   H V          ++   A      + P P +
Sbjct: 48  KILGFKHKVI----TLDRKIVEKAADMVIEHKYPSPAI 81


>gi|257453148|ref|ZP_05618447.1| NAD synthetase [Fusobacterium sp. 3_1_5R]
 gi|317059683|ref|ZP_07924168.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685359|gb|EFS22194.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. 3_1_5R]
          Length = 259

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 50/200 (25%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           KN    +V++ +SGG+DS++VA L  +  G + VI + +                + + +
Sbjct: 17  KNAGFKKVILGLSGGIDSALVAYLAVKALGKENVIAIKM-----------PYKTSSQESI 65

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLL 130
             A  V   + +     +         I P   +Y   +     +     +   + + L 
Sbjct: 66  EHANLVLKDLGLEDRTIE---------ITPMVDAYFTNQAEASSLRRGNYMARTRMTVLF 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
             +             + + L +G   K   ++              + T    +     
Sbjct: 117 DQS------------ALENALVIGTSNKTEILL-------------GYGTLFGDMACSFN 151

Query: 191 PLGDMKKESVRDLAREMGLD 210
           P+GD+ K+ V  L+R MG+ 
Sbjct: 152 PIGDIYKKDVWSLSRYMGVP 171


>gi|300778673|ref|ZP_07088531.1| argininosuccinate synthase [Chryseobacterium gleum ATCC 35910]
 gi|300504183|gb|EFK35323.1| argininosuccinate synthase [Chryseobacterium gleum ATCC 35910]
          Length = 409

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 14/123 (11%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +A SGG+D+S  A  L    GYDV  VT                 + ++  +  R    +
Sbjct: 18  LAFSGGLDTSYCAKYLSETLGYDVYAVT-----------VNTGGFSKEEEKELERKALNL 66

Query: 84  NV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGADVL 141
            V  +   D +E + N+ +              P  V   RT++  ++     ++ AD +
Sbjct: 67  GVKEYRCVDAQEDYYNSCVKYLIFGNVLKNNTYPLSVSAERTIQAQEIAKYAIEVQADAI 126

Query: 142 ATG 144
           A G
Sbjct: 127 AHG 129


>gi|160887327|ref|ZP_02068330.1| hypothetical protein BACOVA_05345 [Bacteroides ovatus ATCC 8483]
 gi|156107738|gb|EDO09483.1| hypothetical protein BACOVA_05345 [Bacteroides ovatus ATCC 8483]
          Length = 248

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+ V   ++                 
Sbjct: 30  EGDKILIGLSGGKDSLALVELLGRRARIYKPRFSVVAVHVVMKNI------------PYQ 77

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    +  C+T  V    +            P   +  +     PC     NR      
Sbjct: 78  SDTEYLKAHCETYGVLFVQY-------ETAFDPATDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|118474439|ref|YP_892017.1| argininosuccinate synthase [Campylobacter fetus subsp. fetus 82-40]
 gi|171473002|sp|A0RP84|ASSY_CAMFF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118413665|gb|ABK82085.1| argininosuccinate synthase [Campylobacter fetus subsp. fetus 82-40]
          Length = 407

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G++V  AR+  
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQDE-YKCEVVTF-----------TADIGQGEEVEPARKKA 54

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +     ++ D  E F    + P           Y  G +    +   R      L+
Sbjct: 55  ISLGIKPENIFIEDLREEFVKDFVFPMFRANAIYEGEYLLGTSIARPLIAKR------LV 108

Query: 131 SVTRQLGADVLATG 144
            +     AD ++ G
Sbjct: 109 EIAAATKADCVSHG 122


>gi|297539672|ref|YP_003675441.1| exsB protein [Methylotenera sp. 301]
 gi|297259019|gb|ADI30864.1| exsB protein [Methylotenera sp. 301]
          Length = 230

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 27/205 (13%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +N      VV +SGG+DS+   A+ K  G+D   ++L  +    A            ++ 
Sbjct: 2   ENKTKKNAVVLLSGGLDSATCLAIAKSQGFDCYCLSLDYHQRHIAE-----------LHA 50

Query: 76  ARRVCDTINVSHYV---FDYEERFRNAVIVPFAS--SYAAGETPLPCVDCNRTVKFSDLL 130
           A+ V + +  + +     D      +A+     +         P+  V    T+  S  L
Sbjct: 51  AKNVANVMGAAAHKTANLDLSLFGGSALTDDAIAVPESETAGIPITYVPARNTIMLSLAL 110

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +    L +  +  G          D        CR   ++  Q+    AT          
Sbjct: 111 AWAEVLKSQDIFIGVNALDYSGYPD--------CRGEYVKAFQAMANLATKSAVEGHAIT 162

Query: 191 ---PLGDMKKESVRDLAREMGLDIA 212
              PL DM K  +  L  E+G+D A
Sbjct: 163 IHAPLIDMTKAQIVTLGTELGVDYA 187


>gi|291545412|emb|CBL18520.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus sp. SR1/5]
          Length = 382

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 28/139 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +      ++ V +SGG DS ++A L +            L    K             
Sbjct: 145 DYELVKPGDKIAVCISGGKDSMLMAKLFQE-----------LKRHNKFPFELVFLVMDPG 193

Query: 73  VYDA-RRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
             +A R V       + +   V      F   +     + Y   ++  PC  C   ++  
Sbjct: 194 YNEANRAVIEHNARLLGIPITV------FETEIFD---AVYNIEKS--PCYLC-ARMRRG 241

Query: 128 DLLSVTRQLGADVLATGHY 146
            L S  ++LG + +A GH+
Sbjct: 242 YLYSKAKELGCNKIALGHH 260


>gi|302886013|ref|XP_003041897.1| hypothetical protein NECHADRAFT_97500 [Nectria haematococca mpVI
           77-13-4]
 gi|256722804|gb|EEU36184.1| hypothetical protein NECHADRAFT_97500 [Nectria haematococca mpVI
           77-13-4]
          Length = 549

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 27/192 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG             R   C   ++          
Sbjct: 244 VIGAVSGGVDSTVAAKLMKEA----IGDRFHAVLIDNGLMRLNECEQVKETLQ-----QH 294

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGA 138
           + ++  V D  E F      +  P       GET            F DL      ++  
Sbjct: 295 LGINLTVVDGAELFLGRLKGIREPEKKRKIIGET------------FIDLFEKEAVRIEK 342

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           +   T +  +   ++   G +   +    DL    +  +    Q+ +  L  PL ++ K+
Sbjct: 343 EAENTPNAGKVSWFLQ--GTQVVCVPGKTDLTIRITTSVVFPRQRMMDGLLEPLRELFKD 400

Query: 199 SVRDLAREMGLD 210
            VR L R + + 
Sbjct: 401 EVRALGRRLQIH 412


>gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
 gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
          Length = 445

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 67/215 (31%), Gaps = 45/215 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY---- 74
           K  R++VA+SGG DS     LL       + +   L  +        +C     +     
Sbjct: 18  KPGRILVAISGGSDSK---GLL-------VALHAALGTADFEGFSLVACTVDHALRSDSA 67

Query: 75  -DARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDL 129
            +A  V   C  + + H V                     G+ P   +     +K +  L
Sbjct: 68  DEAAAVGAFCAGLGIPHQV-----------------CRWPGDKPRAGIQAAARLKRYDML 110

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ--SYFLFATTQQQLCD 187
                   AD +ATGH +       DD      M    D  +    +    A    +   
Sbjct: 111 AEAAAVFRADCIATGHTL-------DDQNETIAMRGARDQGQGHGSAGMAAAMLYGRRTW 163

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
           +  P   +++  +R      G+   D   +++  F
Sbjct: 164 VLRPFLGLRRADIRAYLGGRGIGWFDDPSNENPLF 198


>gi|167845779|ref|ZP_02471287.1| Asparagine synthase family protein [Burkholderia pseudomallei
           B7210]
          Length = 381

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 24  VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 73

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 74  ADSIGARLICIDIDRHLPFSERIV 97


>gi|159905260|ref|YP_001548922.1| argininosuccinate synthase [Methanococcus maripaludis C6]
 gi|159886753|gb|ABX01690.1| Argininosuccinate synthase [Methanococcus maripaludis C6]
          Length = 397

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y VI V                    +D+ +    
Sbjct: 4   KIAVLAYSGGLDTSCCLKLLEDKYDYKVISV------------AVDVGQPEEDLIEPEEK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
                V  HY  D +E F    I     + A  E  PL        +       +  ++G
Sbjct: 52  AKKFGVLKHYTIDAKEEFAKDYIFRAIKANALYEGYPLSTALARPLIAIKI-AELAEEVG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  ++ G         G+D  R   + R    E +    +       L            
Sbjct: 111 ASAISHG-----CTGKGNDQFRFESVMRAKTPEIE---IVAPIRDLNLTRT--------- 153

Query: 198 ESVRDLAREMGLDIADKSD 216
           E + + ARE G+ +    +
Sbjct: 154 EEI-EYAREKGIPVPVNLE 171


>gi|91773296|ref|YP_565988.1| thiamine biosynthesis protein [Methanococcoides burtonii DSM 6242]
 gi|91712311|gb|ABE52238.1| RNA binding protein containing THUMP domain [Methanococcoides
           burtonii DSM 6242]
          Length = 309

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGG+DS V A L+ + G  VI V                    + +  A +  + +
Sbjct: 183 IVLMSGGIDSPVAAWLMMKRGVKVIPVYANNIPFSDD----------RALERAIKAVERL 232

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
                  D  + +                    C+ C RT+ +     + ++  AD + T
Sbjct: 233 Q-KWSPADPMKMYEVPHGKNLDEFMKKCIVKNTCLLCKRTM-YRMAYEIMKKENADGIIT 290

Query: 144 G 144
           G
Sbjct: 291 G 291


>gi|33867043|ref|NP_898602.1| argininosuccinate synthase [Synechococcus sp. WH 8102]
 gi|44887701|sp|Q7U3B9|ASSY_SYNPX RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|33639644|emb|CAE09028.1| Argininosuccinate synthase [Synechococcus sp. WH 8102]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGGVD+SV    LK++           +   +          G ++   R+   
Sbjct: 6   KVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRQKAL 54

Query: 82  TINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               S  +  D  + F      P   + A  E   P      R +    L+ V R++GAD
Sbjct: 55  DAGASQSLVGDLIQPFIEEFAFPAIRANALYEGRYPLSTALARPLIARRLVEVAREVGAD 114

Query: 140 VLATG 144
            +A G
Sbjct: 115 AVAHG 119


>gi|228473589|ref|ZP_04058341.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274961|gb|EEK13771.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624]
          Length = 414

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 35/186 (18%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           A+SGGVDS V+A LL   G   I   +    +  R             D +    +   +
Sbjct: 2   AISGGVDSVVLAHLLHELG---ISFLMAHCNFQLRGEESE-------GDQHFVETLAKEL 51

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           +V   +    +RF          +Y         +   R +++    ++ ++ G D + T
Sbjct: 52  SVPIAI----KRFETK-------TYGKAHGLNTQLAA-RVLRYEWFEALRQEQGYDYILT 99

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
            H              R    +           L     +    +  PL    +E +   
Sbjct: 100 AHQANDSWETFLINTSRGSGLKG----------LLGIPAEN-AHVLRPLLPFSREEILAF 148

Query: 204 AREMGL 209
           A+E G+
Sbjct: 149 AQERGI 154


>gi|219851835|ref|YP_002466267.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanosphaerula palustris E1-9c]
 gi|219546094|gb|ACL16544.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanosphaerula palustris E1-9c]
          Length = 361

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 45/193 (23%)

Query: 24  VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+ SGG+DS V + ++ + G  +I + + L           S    + +  A +V + 
Sbjct: 169 LVALFSGGIDSPVASYMMMKRGCKIIPIYVAL----------DSFLTEKHIARAEQVIEC 218

Query: 83  I-----NVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +     +++ +V   DY  + + A++      Y        CV C R + +        +
Sbjct: 219 LRQYQPDIALHVISDDYLIKAKEALVARKLEKYT-------CVFCKRRM-YRLATKFAEE 270

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA  + TG  +        D          M + R                   PL  +
Sbjct: 271 VGAIGIVTGESLGQVASQTLDNMTVLTNATTMPIYR-------------------PLIGL 311

Query: 196 KKESVRDLAREMG 208
            K  +  +AR++G
Sbjct: 312 DKTEIISIARKIG 324


>gi|119485188|ref|ZP_01619573.1| argininosuccinate synthase [Lyngbya sp. PCC 8106]
 gi|119457416|gb|EAW38541.1| argininosuccinate synthase [Lyngbya sp. PCC 8106]
          Length = 400

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  + V+A SGGVD+SV    LK + + V GV TL   +  +  + +       D   A 
Sbjct: 3   RATKAVLAYSGGVDTSVCIPYLKNE-FGVEGVITLA-ADLGQGDELEPIKQKALDSG-AE 59

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              +++     V D  ERF N    P   + A  E   P      R +    L+    + 
Sbjct: 60  ---ESL-----VIDVRERFVNEFAFPAIQANAFYENRYPLSTALARPLIAQILVEAAEKY 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAIAHG 119


>gi|330836936|ref|YP_004411577.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374]
 gi|329748839|gb|AEC02195.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374]
          Length = 499

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 30/159 (18%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDV-----IGVTLQLYNSRKASKRKGSCCAGQ 71
           NP++  +VVA SGG DSS +  LL R    V     + V +  +  R A +  G      
Sbjct: 47  NPREG-IVVAFSGGADSSALLYLLSRL---VPASSLVAVYV-NHRLRPAEELAGEIAHNT 101

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                   C  + +   + D  E     VI   A+    G          R V++  L +
Sbjct: 102 CF------CAKLGIEIKIVDSGE----DVISNRAAQEGDGI-----EAAARAVRYEILEA 146

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
              +LG   +ATGH    ++           + R   + 
Sbjct: 147 ERARLGFPWIATGHTSDDQME-----TILHRLLRGCSVA 180


>gi|239998936|ref|ZP_04718860.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae 35/02]
 gi|240014155|ref|ZP_04721068.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI18]
 gi|240016590|ref|ZP_04723130.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA6140]
 gi|240080779|ref|ZP_04725322.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA19]
 gi|240112854|ref|ZP_04727344.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae MS11]
 gi|240117903|ref|ZP_04731965.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|240121717|ref|ZP_04734679.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID24-1]
 gi|240123462|ref|ZP_04736418.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID332]
 gi|240125707|ref|ZP_04738593.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|240128163|ref|ZP_04740824.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-93-1035]
          Length = 411

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 73/225 (32%), Gaps = 43/225 (19%)

Query: 26  AMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           A+SGG+DS V+  LL    KR G+    + +            G      D  D  R  C
Sbjct: 2   ALSGGLDSVVLLHLLVCAGKRAGFVPEALHIH----------HGLSPRADDWADFCRNYC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V           +  V        AA              ++++        G DV
Sbjct: 52  DMLGVGLETV------KVCVEKNGLGIEAAARQK----------RYAEFAEK----GFDV 91

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           LA  H+        DD     ++             + A        + + PL    ++ 
Sbjct: 92  LALAHH-------RDDQIETFMLAVARGGGLRALAAMPAVRPLGENGIIWRPLLPFSRQD 144

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           + D AR+ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 145 IWDYARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 189


>gi|255717669|ref|XP_002555115.1| KLTH0G01694p [Lachancea thermotolerans]
 gi|238936499|emb|CAR24678.1| KLTH0G01694p [Lachancea thermotolerans]
          Length = 373

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V V  SGG DS+V+A +LK   + Y+  G+ + L +  +             +   +R 
Sbjct: 68  KVAVGASGGKDSTVLAYVLKLLNERYN-YGIQIVLLSIDEG----IVGYRDDSLATVKRN 122

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            +   +   +  Y E +             A       C  C    +   L     +LG 
Sbjct: 123 KEQYGLPLEIVSYRELY-----DWTMDEIVACAGVRNSCTYCGVFRR-QALDRGAAKLGI 176

Query: 139 DVLATGHYI 147
             + TGH  
Sbjct: 177 RHVVTGHNA 185


>gi|171184996|ref|YP_001793915.1| NAD+ synthetase [Thermoproteus neutrophilus V24Sta]
 gi|170934208|gb|ACB39469.1| NAD+ synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 263

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 58/184 (31%), Gaps = 48/184 (26%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DSS   AL     G D V+ + L                  QDV DA  +   + V H+V
Sbjct: 35  DSSTALALAVEALGADRVVALVL-----------PSRYTPQQDVEDAVSLARQLGVRHFV 83

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVLATGHYI 147
              ++       +PF   Y  G+        N    V+ S L     +    VL TG   
Sbjct: 84  VQIDQIASAYSSLPF---YDEGDQ---VARGNLMARVRMSILYYYANRYDMLVLGTGDKS 137

Query: 148 RSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206
              L Y    G     +                           P+GD+ K  VR +A+ 
Sbjct: 138 ELMLGYFTKYGDGGVDLL--------------------------PIGDLYKTQVRRMAKH 171

Query: 207 MGLD 210
           +G+ 
Sbjct: 172 LGVP 175


>gi|123968948|ref|YP_001009806.1| hypothetical protein A9601_14151 [Prochlorococcus marinus str.
           AS9601]
 gi|123199058|gb|ABM70699.1| Hypothetical protein A9601_14151 [Prochlorococcus marinus str.
           AS9601]
          Length = 370

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 24/104 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSR------------KASKRKGSCCAG 70
           +V +SGG+DSS V    K  G   + V +   ++                   +      
Sbjct: 66  IVGVSGGLDSSTVLIKAKELGLRCLAVHMDNGWDEPLSQRNIEIILKATGFDYETWVIDW 125

Query: 71  QDVYDARR--VCDTINVSHYVFDYEERFRNAVIV---PFASSYA 109
           ++  D ++  +   +       D E  + NA       FA  Y 
Sbjct: 126 EEYRDLQKAYIASDL------IDIEMLYDNAAFAVNFYFAQKYK 163


>gi|83313120|ref|YP_423384.1| PP-loop superfamily ATPase [Magnetospirillum magneticum AMB-1]
 gi|110816230|sp|Q2W000|QUEC_MAGSA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|82947961|dbj|BAE52825.1| Predicted PP-loop superfamily ATPase [Magnetospirillum magneticum
           AMB-1]
          Length = 227

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 38/236 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+ V A+ K +G+    +T +                  ++  A RV   +
Sbjct: 5   IVLLSGGLDSATVLAIAKAEGFAPAALTFRY-----------GQRHAVEIRAAERVAAAL 53

Query: 84  NV-SHYVFDY-------EERFRN-AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +  H + D             + AV             P+  V    T+  S  L+   
Sbjct: 54  GIRDHRIADIDLRVFGGSALTSDIAVPKGELDEAIPAGIPVTYVPARNTIMLSFALAFAE 113

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF---- 190
            LGA  +  G          D        CRP D  +         T+  +   R     
Sbjct: 114 VLGAADIFVGVNAVDYSGYPD--------CRP-DYIKAFEAMANLATKAAVEGTRLTIHT 164

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK---YFDVVKRINAGIALEG 243
           PL D+ K  +  + R + L +     S        GK   + D  +    G A  G
Sbjct: 165 PLIDLTKGQI--IRRGLDLGVDYSITSTCYDPTPDGKACGHCDSCRLRLKGFAEAG 218


>gi|282898901|ref|ZP_06306885.1| ExsB [Cylindrospermopsis raciborskii CS-505]
 gi|281196212|gb|EFA71125.1| ExsB [Cylindrospermopsis raciborskii CS-505]
          Length = 222

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 70/203 (34%), Gaps = 32/203 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS V    + DGY+   ++   +               +++  A  + 
Sbjct: 1   MKAVILLSGGLDSSTVLYQARADGYECYAISFDYHQ-----------RHRRELQSAMSIA 49

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ V  +    FD      +A+                +   P+  V    T+  S  L
Sbjct: 50  QSLGVVEHQQVTFDLRSWGGSALTDNSIPVPHNRPLDQMSESIPITYVPARNTIFLSFGL 109

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--- 187
           +    + A+ +  G          D        CRP  +   Q  F   T Q +      
Sbjct: 110 AYAEAIRAERVYIGVNALDYSGYPD--------CRPDYIHAMQEVFRLGTKQGREGKPID 161

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           +  PL ++ K  +  L   +G+ 
Sbjct: 162 IIAPLINLTKTQIIQLGNRLGVP 184


>gi|311739982|ref|ZP_07713816.1| GMP synthase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305055|gb|EFQ81124.1| GMP synthase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 524

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 20/193 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ R +  +SGGVDS+V AAL++R  G  +  V     +       +             
Sbjct: 219 EEGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF----- 270

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            V  T        D    F   +                 +          L        
Sbjct: 271 -VAST-GAKLVTADERAAFLEKLAGVSDPEAKRKAIGAEFIRSFERAVAGVLDDAPAGST 328

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            D L  G      +  G  G       +           +         +L  PL  + K
Sbjct: 329 VDYLVQGTLYPDVVESG--GGDGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFK 379

Query: 198 ESVRDLAREMGLD 210
           + VR + RE+GL 
Sbjct: 380 DEVRAVGRELGLP 392


>gi|20094344|ref|NP_614191.1| ATP pyrophosphatase involved in thiamine biosynthesis [Methanopyrus
           kandleri AV19]
 gi|19887403|gb|AAM02121.1| ATP pyrophosphatase involved in thiamine biosynthesis [Methanopyrus
           kandleri AV19]
          Length = 374

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75
              RVV  +SGG+DS V A    R G +VI + L   +  +   A +R     +     D
Sbjct: 164 SQSRVVCLVSGGIDSPVAAWYAARRGCEVIWLHLDRGKYGSEVDAVERLAGKFSEWLPSD 223

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                        + D+E+       +              CV C R +       V   
Sbjct: 224 V---------ELLIEDFED------FMESLEGLEGESARYRCVLCKREMIRRA-CDVCEN 267

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGD 194
           +GA  +  G  I        D                      A   +      F PL  
Sbjct: 268 VGAVAVVMGDVIGQVASQIPDNL--------------------AVIDRVARFPVFRPLLG 307

Query: 195 MKKESVRDLAREMGL 209
             K  V+ L+  +GL
Sbjct: 308 FDKNEVQRLSERLGL 322


>gi|296415350|ref|XP_002837353.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633217|emb|CAZ81544.1| unnamed protein product [Tuber melanosporum]
          Length = 352

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  R+ +  SGG DS+V+A++LK   + YD  GV   L +  +  K          +   
Sbjct: 57  KGSRIAIGASGGKDSTVLASVLKTLNERYD-YGVEFVLLSIDEGIKGY----RDDSLETV 111

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +R      +   +  YEE +    ++V+       + G+    C  C    +   L    
Sbjct: 112 KRNAIQYGMELVIVSYEELYGWSMDSVVE------SIGKKGN-CTYCGVFRR-QALDRGA 163

Query: 134 RQLGADVLATGHYI 147
            +LG   + TGH  
Sbjct: 164 ERLGIHHVVTGHNA 177


>gi|302874196|ref|YP_003842829.1| argininosuccinate synthase [Clostridium cellulovorans 743B]
 gi|307689543|ref|ZP_07631989.1| argininosuccinate synthase [Clostridium cellulovorans 743B]
 gi|302577053|gb|ADL51065.1| argininosuccinate synthase [Clostridium cellulovorans 743B]
          Length = 405

 Score = 45.5 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 27/139 (19%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +DK+ K  +VV+A SGG+D+SV+   LK             YN        G    G D 
Sbjct: 1   MDKD-KIKKVVLAYSGGLDTSVIITWLKE-----------NYNCEI-VAVSGDVGQGDDY 47

Query: 74  YDARRVCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVK 125
              +           Y+ D +E F    I P         + Y  G +        R + 
Sbjct: 48  EVLKEKAIKTGASKLYIADLKEEFVEEYIFPTLKAGAVYENKYFLGTSFA------RPII 101

Query: 126 FSDLLSVTRQLGADVLATG 144
              ++ + +  GAD +  G
Sbjct: 102 AKKIVEIAKAEGADAIVHG 120


>gi|320530662|ref|ZP_08031708.1| NAD+ synthetase [Selenomonas artemidis F0399]
 gi|320137070|gb|EFW29006.1| NAD+ synthetase [Selenomonas artemidis F0399]
          Length = 554

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 60/173 (34%), Gaps = 36/173 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RVVV +SGG+DS+V AAL      D IG   V L    SR  S+             A R
Sbjct: 244 RVVVGISGGIDSAVSAALYV----DAIGADRVLLVNMPSRFNSETTKGL--------AAR 291

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYA------AGETPLPCVDCNRTVKF------ 126
           + + +     +   EE      +   A+  +      A  TP   +  +  V+       
Sbjct: 292 LAENLGCRSMIVPIEES-----VAYTAAQLSEIPIEGAAATPGEHLTISSFVRENMQARN 346

Query: 127 ---SDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSY 175
                L S+    GA     G+     + Y    G     +    DL + Q Y
Sbjct: 347 RSGRVLSSIAAAWGAGFTCNGNKAECTVGYATLYGDLAGFLAALADLWKYQVY 399


>gi|304437340|ref|ZP_07397299.1| NAD synthetase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369596|gb|EFM23262.1| NAD synthetase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 555

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 15/77 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            RVV+ +SGG+DS+V AAL      D IG   V L    S+  S              A 
Sbjct: 244 KRVVIGISGGIDSAVSAALYV----DAIGAENVLLVNMPSKFNSATTKGL--------AA 291

Query: 78  RVCDTINVSHYVFDYEE 94
           ++   +   H +   EE
Sbjct: 292 QLAKNLGCRHMIVPIEE 308


>gi|257064933|ref|YP_003144605.1| exsB protein [Slackia heliotrinireducens DSM 20476]
 gi|256792586|gb|ACV23256.1| exsB protein [Slackia heliotrinireducens DSM 20476]
          Length = 235

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          +    +  R +V  SGGVDS+   AL         G      ++  +          +++
Sbjct: 1  MTSTDQPTRAMVLSSGGVDSTTCLALACEQ----FGA-----DNVTSVSVFYGQRHNKEL 51

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  V     V+H+V D  
Sbjct: 52 ACADAVAKHYGVAHHVLDLA 71


>gi|110816279|sp|Q9PCC3|QUEC_XYLFA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
          Length = 230

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+VV A+ +  G+ V  ++++                  ++  A R+ 
Sbjct: 2  KKAVVLLSGGMDSAVVTAIAQSQGFMVHALSIRY-----------GQRHTSELDAAVRIA 50

Query: 81 DTINV-SHYVFD 91
            +NV +H V D
Sbjct: 51 RVLNVAAHKVVD 62


>gi|261349629|ref|ZP_05975046.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanobrevibacter smithii DSM 2374]
 gi|288861587|gb|EFC93885.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Methanobrevibacter smithii DSM 2374]
          Length = 381

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
             +VVV +S G+DS V   L+ + G +VI + 
Sbjct: 175 QGKVVVLVSSGIDSPVAVYLMMKRGCEVIALH 206


>gi|21228619|ref|NP_634541.1| thiamine biosynthesis protein [Methanosarcina mazei Go1]
 gi|23822243|sp|Q8PU39|THII_METMA RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|20907117|gb|AAM32213.1| Thiamine biosynthesis protein [Methanosarcina mazei Go1]
          Length = 405

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 68/206 (33%), Gaps = 40/206 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCC-AGQDVYDA 76
             ++VV MSGG+DS V A L+ + G  +I V      Y    A +R   C    Q     
Sbjct: 195 QGKMVVLMSGGLDSPVAAWLMMKRGVMIIPVYCNTSPYAENAAKERAYDCIRQLQTWASG 254

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +   T  + H   +            F        T   C+ C R + + +   + ++ 
Sbjct: 255 HQF-TTYEIPH-GPNLRS---------FIEMCDRKNT---CLLCKRMM-YREAYEIMKKE 299

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM 195
           GA  + TG  +                         Q+         QL    + PL   
Sbjct: 300 GASGIITGSSLGQVAS--------------------QTAANMHAEIYQLAIPIYHPLIAF 339

Query: 196 KKESVRDLAREMGLDIADKSDSQDIC 221
            K  + D+AR++G      + S   C
Sbjct: 340 DKSEIIDIARKIG-TYDISTRSAGSC 364


>gi|22298254|ref|NP_681501.1| argininosuccinate synthase [Thermosynechococcus elongatus BP-1]
 gi|29336659|sp|Q8DKY7|ASSY_THEEB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|22294433|dbj|BAC08263.1| argininosuccinate synthetase [Thermosynechococcus elongatus BP-1]
          Length = 401

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V++A SGGVD+SV    L    G  +VI  TL + +  +  + +      Q   DA   
Sbjct: 6   KVILAYSGGVDTSVCIPYLQHEWGVKEVI--TLAV-DLGQGDELE---PIRQKALDAGAS 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                    V D +  F      P   + A  E   P      R +    L+    Q GA
Sbjct: 60  ASL------VADAKAEFIRNYAFPAIQANALYENRYPLSTALARPLIAKLLVEAATQYGA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|268608652|ref|ZP_06142379.1| cell cycle protein MesJ [Ruminococcus flavefaciens FD-1]
          Length = 457

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 79/261 (30%), Gaps = 73/261 (27%)

Query: 23  VVVAMSGGVDS---SVVAALLKRD-GYDVIGVTL-QLYNSRKASKRKGSCCAGQDVYDAR 77
           VV  +SGG DS    +    L+   G +V  + +       ++ + +  CC         
Sbjct: 21  VVCGLSGGADSVGLLLALYELREKLGINVEALHVNHCLRGEESDRDEEFCCH-------- 72

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C  + +          FR  V              L   +  R +++          G
Sbjct: 73  -LCSRLGIPF------SAFRVDVKSYAKEH------SLSDEEAARKLRYGVF--EANSQG 117

Query: 138 ADVLATGHYIRSRLY-------------------VGDDGKRRRIMC------------RP 166
              +AT H     L                    V  +   R ++             R 
Sbjct: 118 K-KIATAHNANDNLETVILNLARGSALKGMAGIPVRRNNIIRPLLTVSREEIEAFLSERG 176

Query: 167 MDLERDQSYFLFATTQQQLCDLRFPL-GDMKKE----SVRDLAR---EMGLDIADKSDSQ 218
            +   D +      T+ ++     PL  ++       SVR +A    E  L  A+  +++
Sbjct: 177 QEFVTDSTNLSDDYTRNKIRHKIIPLMNELNSSVIATSVRSIAAMRSENELIEAETDEAE 236

Query: 219 DIC-----FVQQGKYFDVVKR 234
           + C     F    +Y  V++R
Sbjct: 237 EKCRRDNAFTGLSQYHAVIRR 257


>gi|150401052|ref|YP_001324818.1| argininosuccinate synthase [Methanococcus aeolicus Nankai-3]
 gi|150013755|gb|ABR56206.1| Argininosuccinate synthase [Methanococcus aeolicus Nankai-3]
          Length = 401

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 37/204 (18%)

Query: 17  NPKDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           N    ++ V A SGG+D+S    LL+             YN +  +         +++  
Sbjct: 3   NENKEKIAVLAYSGGLDTSCCLKLLEE-----------NYNYKVVTACVDVGQPEEEITK 51

Query: 76  ARRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS-DLLSVT 133
                    V +HY  D +E F    I     + A  E   P             L+ + 
Sbjct: 52  PVEKAKEYGVFAHYTIDAKEEFAKEYIFRAIKANAIYE-GYPLSTALARPLIGLKLVELA 110

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           ++L A+ ++ G         G+D  R   + R    E                 +  P+ 
Sbjct: 111 KELNAEAISHG-----CTGKGNDQFRFESIMRAKAPE---------------VKIIAPIR 150

Query: 194 D--MKKESVRDLAREMGLDIADKS 215
           D  + +    + A++ G+ I  +S
Sbjct: 151 DLNLTRSEEIEYAKKHGIPIPTES 174


>gi|303327761|ref|ZP_07358201.1| glutamine-dependent NAD+ synthetase [Desulfovibrio sp. 3_1_syn3]
 gi|302862122|gb|EFL85056.1| glutamine-dependent NAD+ synthetase [Desulfovibrio sp. 3_1_syn3]
          Length = 552

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKR 63
           A  L + D  +     R ++ +SGG+DS++V  +     G D V GV +           
Sbjct: 279 ALTLGTRDFVRKCGAERAILGLSGGMDSALVCCIAVEALGADKVTGVLM----------- 327

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVF 90
                +   + DARR+ D + VS  + 
Sbjct: 328 PSPYTSEDSLTDARRLADNLGVSTVIL 354


>gi|229825237|ref|ZP_04451306.1| hypothetical protein GCWU000182_00590 [Abiotrophia defectiva ATCC
           49176]
 gi|229790609|gb|EEP26723.1| hypothetical protein GCWU000182_00590 [Abiotrophia defectiva ATCC
           49176]
          Length = 280

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 24/132 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +  R+ V +SGG DS ++A L++          L+ +   +   +      G +  +++
Sbjct: 37  KEGDRIAVCISGGKDSFLLAKLMQE---------LKRHRKFEYELKFIVMDPGYNSENSK 87

Query: 78  RV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +      + +   +      F + +         +     PC  C   ++   L S  +
Sbjct: 88  LIEENAKLLEIPVEI------FHSEIFDVVVDIEKS-----PCYLC-ARMRRGHLYSKAK 135

Query: 135 QLGADVLATGHY 146
           +LG + +A GH+
Sbjct: 136 ELGCNKIALGHH 147


>gi|217968052|ref|YP_002353558.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337151|gb|ACK42944.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 318

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+ +++VA+SGG DS +    +L   GY   G+ + L  S  + K K +          +
Sbjct: 46  KNDQILVAVSGGKDS-LALWDILISLGYKADGLHIDLGISEYSEKSKET---------VK 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  ++ N+  ++   ++ +            A      PC  C   +K   +     +L 
Sbjct: 96  KFAESKNLKLHIISIKDLYGLG-----IKEIAHKNRKTPCATCG-VIKRYIMNLAALELK 149

Query: 138 ADVLATGHYI 147
            +V+ATGH +
Sbjct: 150 YNVIATGHNL 159


>gi|189485660|ref|YP_001956601.1| hypothetical protein TGRD_657 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287619|dbj|BAG14140.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 278

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 53/212 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDARR 78
           +VA SGG DS+    LLK      G  VI VT +            SC    +++ +   
Sbjct: 21  IVAFSGGTDST---FLLKTAHGVLGNKVIAVTAK------------SCSFPQRELNETTA 65

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C+  N+   + D EE             ++   T   C  C + + F  + SV +  G 
Sbjct: 66  FCEKENIRQIICDVEEL--------NIKGFSRNPT-NRCYLCKKEL-FVKIWSVAKDNGI 115

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
                 + +     + DD   R  +    +         ++     L  +      + K+
Sbjct: 116 ------YNVSEASNIDDDRDYRPGLKAVSE---------YSVKSP-LRHV-----KLTKD 154

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
            +R L++++GL   +K      C + +  Y +
Sbjct: 155 EIRSLSKKLGLPTWNKQSF--ACLISRLPYGE 184


>gi|73748831|ref|YP_308070.1| glutamine-dependent NAD(+) synthetase [Dehalococcoides sp. CBDB1]
 gi|73660547|emb|CAI83154.1| glutamine-dependent NAD(+) synthetase [Dehalococcoides sp. CBDB1]
          Length = 566

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V +A  L + D        +VV+ +SGG+DSS+VA +     G + V+GV +        
Sbjct: 288 VYQALLLGTRDYINKNGFKKVVIGLSGGIDSSLVATIAADALGPENVVGVIM-------- 339

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                   +   + D+  +   + +       +  F++   +   S   AG    
Sbjct: 340 ---PSRYSSEGSISDSLHLAGNLGIKTLQIPIDPLFQS--FLNTLSDVFAGTEAN 389


>gi|312134561|ref|YP_004001899.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774612|gb|ADQ04099.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL]
          Length = 456

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 33/153 (21%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNS 57
           M + E  + N        K  +V++  SGGVDS V       LK +           YN 
Sbjct: 1   MELLEKVKNNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCMYRLKDE-----------YNL 49

Query: 58  RKASKRKGSCCAGQDVYDARRV---CDTINVSHYV--FDYEERFRNAVIVPFASSYAAGE 112
                        +   D + V   C   N+       D  +  +        S   AG 
Sbjct: 50  DITVAHLNHMLRPEADEDEKFVIEMCKRYNIKCITRKVDVAKLKKEK----GLSEEEAGR 105

Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
           +           ++S    + +++  D +  GH
Sbjct: 106 SA----------RYSFFYEIAKEISIDRILLGH 128


>gi|288560731|ref|YP_003424217.1| hypothetical protein mru_1475 [Methanobrevibacter ruminantium M1]
 gi|288543441|gb|ADC47325.1| hypothetical protein mru_1475 [Methanobrevibacter ruminantium M1]
          Length = 386

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA+SGG DSS    L K+ G++ I VT                   Q  Y+  ++   +
Sbjct: 154 IVALSGGTDSSFSLILAKKLGFNPIAVT---------VDPGTIVLPNQFKYNIDKLTSKL 204

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           +V H          + +I        AG    PC  C++ ++   L          ++  
Sbjct: 205 DVKHEYIPVA---YDDIIEDSL----AGR-FHPCGRCSKRIE-ETLFKYAVDNDIPMVIF 255

Query: 144 GHYIRS 149
           G  + +
Sbjct: 256 GDMLST 261


>gi|260891545|ref|ZP_05902808.1| GMP synthase [Leptotrichia hofstadii F0254]
 gi|260858928|gb|EEX73428.1| GMP synthase [Leptotrichia hofstadii F0254]
          Length = 269

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D  V++A+SGGVDSSV A L+    G+ +  + 
Sbjct: 214 DEHVLLALSGGVDSSVAAVLINNAIGHQLTCMF 246


>gi|227498705|ref|ZP_03928849.1| archaeosine biosynthesis protein queC [Acidaminococcus sp. D21]
 gi|226904161|gb|EEH90079.1| archaeosine biosynthesis protein queC [Acidaminococcus sp. D21]
          Length = 233

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 17/81 (20%)

Query: 21 MRVVVAMSGGVDS----SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + +V  SGGVDS    SV    L   G + +                      +++  A
Sbjct: 3  KKALVLSSGGVDSTTCVSVAVHEL---GRENVA----------TVSIFYGQKHRKELDAA 49

Query: 77 RRVCDTINVSHYVFDYEERFR 97
          ++V D  +V HY  D  + F+
Sbjct: 50 QKVADFYHVPHYELDLSKIFQ 70


>gi|124486431|ref|YP_001031047.1| hypothetical protein Mlab_1618 [Methanocorpusculum labreanum Z]
 gi|189038924|sp|A2STX4|QUEC_METLZ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|124363972|gb|ABN07780.1| exsB protein [Methanocorpusculum labreanum Z]
          Length = 222

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 20/113 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V  +SGG+DS+ +A + K+ GYD++ +              G     +++  A++V 
Sbjct: 2   KKAVCLLSGGMDSTTLAFVAKKMGYDILALH----------VNYGQRTERKELEAAKKVA 51

Query: 81  DTIN-VSH--YVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFS 127
           D +  V       DY ++F  + +        A   G    P    N  V F 
Sbjct: 52  DVLGVVEFLEISLDYFKKFGASSLTDMNIEVEAGVLGRADNP----NTYVPFR 100


>gi|157813150|gb|ABV81320.1| putative GMP synthetase [Thulinius stephaniae]
          Length = 199

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKR 42
          KD +VV+  SGGVDS+V AALL +
Sbjct: 42 KDKKVVLLASGGVDSTVCAALLXK 65


>gi|126460144|ref|YP_001056422.1| asparagine synthase [Pyrobaculum calidifontis JCM 11548]
 gi|126249865|gb|ABO08956.1| asparagine synthase [Pyrobaculum calidifontis JCM 11548]
          Length = 274

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 28/197 (14%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           V +SGG+DS++VA   +R G+  +G+T+ L                 D+  A      ++
Sbjct: 15  VLLSGGIDSTLVAYAARRIGHVPVGITVSL------------VSCQGDLPFALYAAARLS 62

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
               +           +                   N  V+++ L    R LG   + TG
Sbjct: 63  TPLSIVQVRLVEALDYVERAMEVLK---NFNAMELVNCAVQYAGL-ERARDLGLRRVCTG 118

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR-----FPLGDMKKES 199
                 L++G    R+  +   ++ +R +    +    +Q+          P     +  
Sbjct: 119 D-GGDELFLGYSFYRKYPLH-ALEEKRREIVAKWRFCSRQIAQALGLEAVLP---FTENE 173

Query: 200 VRDLAREMGLDIADKSD 216
           V   A  + L  A+  D
Sbjct: 174 VVKFA--LALPAAEVLD 188


>gi|113953557|ref|YP_732115.1| argininosuccinate synthase [Synechococcus sp. CC9311]
 gi|119361336|sp|Q0I607|ASSY_SYNS3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|113880908|gb|ABI45866.1| argininosuccinate synthase [Synechococcus sp. CC9311]
          Length = 401

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RATKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRL 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  +  +  D  + F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALEAGATQSLVGDLIKPFIEEFAFPAIRANALYEGRYPLSTALARPLIARRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|169772959|ref|XP_001820948.1| argininosuccinate synthase [Aspergillus oryzae RIB40]
 gi|238490888|ref|XP_002376681.1| argininosuccinate synthase [Aspergillus flavus NRRL3357]
 gi|83768809|dbj|BAE58946.1| unnamed protein product [Aspergillus oryzae]
 gi|220697094|gb|EED53435.1| argininosuccinate synthase [Aspergillus flavus NRRL3357]
          Length = 417

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV +A SGG+D+S +   L  +GY+V+                G+    +D      
Sbjct: 4   EKPRVCLAYSGGLDTSCILRWLIEEGYEVVCF-------------LGNVGQEEDWAAVEE 50

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I     V  D    F   +  P           Y  G +    V     ++     
Sbjct: 51  KALKIGAKKMVIEDLRREFVEELCFPAIQCNAIYEGRYLLGTSLARPVIARAQMR----- 105

Query: 131 SVTRQLGADVLATG 144
            V ++ G   ++ G
Sbjct: 106 -VAQREGCQFVSHG 118


>gi|262306049|gb|ACY45617.1| gln amidotransferase [Hanseniella sp. 'Han2']
          Length = 197

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRD 43
          D +V++ +SGGVDS+V AALL + 
Sbjct: 43 DHKVLMLVSGGVDSTVCAALLHKA 66


>gi|291296315|ref|YP_003507713.1| GMP synthase large subunit [Meiothermus ruber DSM 1279]
 gi|290471274|gb|ADD28693.1| GMP synthase, large subunit [Meiothermus ruber DSM 1279]
          Length = 508

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 35/204 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D+     D +V++A+SGGVDSS +A LL R     IG      +   A           +
Sbjct: 203 DIRAKVGDEKVLLAVSGGVDSSTLALLLARA----IG------DRMTAVFVDHGLLRLGE 252

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             +  +    +  +  V +   +F +A   V  P       G                  
Sbjct: 253 RQEVEQALRPLGKALRVVEASGQFLSALRGVTDPEQKRKIVGREF-----------IRVF 301

Query: 130 LSVTRQL---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
               RQL   G   LA G      +     G+    +    +        +    +    
Sbjct: 302 EREARQLSAQGYRWLAQGTLYPDVIESAGSGEGSANIKSHHN--------VGGLPEDLQF 353

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           +L  P   + K+ VR+LA  +GL 
Sbjct: 354 ELLEPFRYLFKDEVRELALLLGLP 377


>gi|159486883|ref|XP_001701466.1| adenine nucleotide hydrolase [Chlamydomonas reinhardtii]
 gi|226711414|sp|A8JF71|CTU1_CHLRE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|158271648|gb|EDO97463.1| adenine nucleotide hydrolase [Chlamydomonas reinhardtii]
          Length = 357

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 18/135 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
               R+ VA SGG DS+V+A ++      Y+  G+ L L +  +      +      +  
Sbjct: 49  KHGERLAVAASGGKDSTVLAHIMSTLNARYN-YGLDLFLLSIDEG----ITGYRDDSLET 103

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +R      +   V  Y+E +    + ++           T   C  C    +   L   
Sbjct: 104 VKRNEQQYGIPLKVVSYKELYGWTMDEIVSQI-------GTKNNCTFCGVFRR-QALDRG 155

Query: 133 TRQLGADVLATGHYI 147
              +GA+ +ATGH  
Sbjct: 156 AVLMGANKIATGHNA 170


>gi|148243621|ref|YP_001228778.1| argininosuccinate synthase [Synechococcus sp. RCC307]
 gi|147851931|emb|CAK29425.1| Argininosuccinate synthase [Synechococcus sp. RCC307]
          Length = 410

 Score = 45.5 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 60/201 (29%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGGVD+SV    LK +           +   +          G ++   R+   
Sbjct: 11  KVVLAYSGGVDTSVCIPYLKHE-----------WGVEEVITFAADLGQGDELEPIRQKAL 59

Query: 82  TINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               S  +  D  E F      P   + A  E   P      R +    L+ + R++GAD
Sbjct: 60  DAGASQSLVGDLIEPFITEFAFPAIRANALYEGRYPLSTALARPLIARRLVEIAREVGAD 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--GDMK 196
            +A G                   C       DQ  F  A         +  P     M 
Sbjct: 120 AVAHG-------------------CTGK--GNDQVRFDVAIGALAPDLKVLTPAREWGMS 158

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E         GL       S
Sbjct: 159 REETIAYGERYGLPSPVSKRS 179


>gi|302558906|ref|ZP_07311248.1| GMP synthase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302476524|gb|EFL39617.1| GMP synthase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 260

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D R +  +SGGVDS+V AAL+++  G  +  V 
Sbjct: 224 DKRAICGLSGGVDSAVAAALVQKAIGSQLTCVY 256


>gi|238916535|ref|YP_002930052.1| argininosuccinate synthase [Eubacterium eligens ATCC 27750]
 gi|259585357|sp|C4Z4C1|ASSY_EUBE2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|238871895|gb|ACR71605.1| argininosuccinate synthase [Eubacterium eligens ATCC 27750]
          Length = 408

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK    YDV+ V     +  +  +  G          A+ 
Sbjct: 4   KVILAYSGGLD--TTAIIPWLKETYNYDVVCV---CADCGQEEELDGLEQRALSCGAAK- 57

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
                    Y+ D  + F +  IVP   ++A  E          R +    L+ + R+ G
Sbjct: 58  --------LYIEDITDEFCDNYIVPCVQAHAVYENKYLLGTSMARPLIAKRLVEIARKEG 109

Query: 138 ADVLATG 144
           A  +  G
Sbjct: 110 AVAICHG 116


>gi|297619529|ref|YP_003707634.1| ATPase of the PP-loop superfamily protein implicated in cell cycle
           control-like protein [Methanococcus voltae A3]
 gi|297378506|gb|ADI36661.1| ATPase of the PP-loop superfamily protein implicated in cell cycle
           control-like protein [Methanococcus voltae A3]
          Length = 323

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++  SGG DS V   LL  D      + ++               A + + + + +    
Sbjct: 106 ILGFSGGKDSVVALYLLIND------LKMK----PLCITVDNGYMAEESMENCKNIAKYF 155

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V   V +   R          S    GE+  PC  C+  +   +L    RQ   D + T
Sbjct: 156 KVDWIVLN---RDYTKFFNKMIS---RGES--PCRICS-DMNMHELWHFARQTNIDTIVT 206

Query: 144 GHYIRSRLYVGDDGKRRRIMCR 165
           GH +        + K+   + R
Sbjct: 207 GHELPFGTTALRNMKKDITLAR 228


>gi|148377922|ref|YP_001256798.1| NH(3)-dependent NAD(+) synthetase [Mycoplasma agalactiae PG2]
 gi|148291968|emb|CAL59360.1| NH(3) dependent NAD(+) synthetase [Mycoplasma agalactiae PG2]
          Length = 270

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 48/191 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DS++VA+L  +   +   G+ +                   D+ D  ++  T
Sbjct: 46  VVGISGGIDSALVASLCAKAFPNNTLGLVM------------PIDSMNHDLEDISKLERT 93

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADV 140
           IN+        + F               E        N    ++   L +  +Q     
Sbjct: 94  INLKFKTVLLNKSFDE------VKKSLNNEVDNLLSISNIKPRLRMIALYAYAQQ----- 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL-RFPLGDMKKES 199
                   + L +G D                  YF+   T+     +   P+  + K  
Sbjct: 143 -------NNYLVMGTD--------------NQDEYFIGYFTKHGDGGVDLLPISKLLKSE 181

Query: 200 VRDLAREMGLD 210
           VR +A+ + + 
Sbjct: 182 VRMMAKYLNVP 192


>gi|304315867|ref|YP_003851012.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777369|gb|ADL67928.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 459

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 20/129 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K   +VV +SGG DS  +  LL    + Y+     L+LY        +G   A  D    
Sbjct: 17  KGDSIVVGVSGGPDSICLINLLSEFKEKYN-----LRLYVVHVNHMLRGI-DADNDASFV 70

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             VC  + +  +       F+  V         + E         R V++     +  ++
Sbjct: 71  EGVCRGMGIPFF------LFKEDVKKYALEKGLSEE------AAGREVRYKAFHEIFEKV 118

Query: 137 GADVLATGH 145
            AD +A  H
Sbjct: 119 NADKIAVAH 127


>gi|228472050|ref|ZP_04056818.1| GMP synthase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276662|gb|EEK15375.1| GMP synthase [Capnocytophaga gingivalis ATCC 33624]
          Length = 508

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD 43
           +VV+ +SGGVDS+V A LL R 
Sbjct: 214 KVVLGLSGGVDSTVAAVLLNRA 235


>gi|182415565|ref|YP_001820631.1| NAD+ synthetase [Opitutus terrae PB90-1]
 gi|177842779|gb|ACB77031.1| NAD+ synthetase [Opitutus terrae PB90-1]
          Length = 573

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            R ++A+SGG+DS++VA +     G + V GV+L             +  +     DAR+
Sbjct: 309 KRALIALSGGIDSALVAVIATAALGAENVTGVSL-----------PSAISSQHSRDDARQ 357

Query: 79  VCDTINVSHYVFDYEE 94
           +   + +        E
Sbjct: 358 LAQNLGIRFETIAIAE 373


>gi|331091115|ref|ZP_08339957.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405337|gb|EGG84873.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 244

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   + V +SGG DS         LKR     +++  +T+ L  S              D
Sbjct: 22  EGDHIAVGISGGKDSLTLLYALHGLKRFYPKKFELSAITVDLGYSD------------FD 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +     +C  ++V + +           I              PC  C +  K   L   
Sbjct: 70  LTPVENLCRELDVPYKIV-------KTDIGRILFEERKES--NPCSLCAKMRK-GALNEA 119

Query: 133 TRQLGADVLATGHY 146
            +++G + +A  H+
Sbjct: 120 VKEMGCNKVAYAHH 133


>gi|302348658|ref|YP_003816296.1| GMP synthase (glutamine-hydrolyzing) [Acidilobus saccharovorans
           345-15]
 gi|302329070|gb|ADL19265.1| GMP synthase (glutamine-hydrolyzing) [Acidilobus saccharovorans
           345-15]
          Length = 517

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P++ + +VA+SGGVDS+  A + KR           L +               +  +  
Sbjct: 220 PREDKAIVAVSGGVDSTTAAVIAKRA----------LGDRAVVVFINHGLLREGEAEEVL 269

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
               ++ ++    D  +RF  A           G T     +  R V       V ++  
Sbjct: 270 SALKSLGLNPIYIDASDRFLRA---------LKGVT---DPEQKRLVVGKVFAEVFKE-- 315

Query: 138 ADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              +AT       L  G               D  +   + +    +     +  PL  +
Sbjct: 316 ---VATSDSSIRWLVQGTTYPDVIESGAEAGADRIKSH-HNVGGLPRDLGLRVIEPLRYL 371

Query: 196 KKESVRDLAREMGLD 210
            K+ VR LA  +G+ 
Sbjct: 372 YKDEVRRLALSLGIP 386


>gi|269926107|ref|YP_003322730.1| NAD+ synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789767|gb|ACZ41908.1| NAD+ synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 246

 Score = 45.5 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 41/188 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + + +SGG+DS+ VA L  +     +G        +  +         QD   AR V + 
Sbjct: 26  IALNLSGGIDSATVAGLAVKA----VG------PDKVHTLILPIHSNPQDEEHARLVAEK 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             ++    D        V      +   G            +K        R +    +A
Sbjct: 76  FGLTPQKIDLSP-----VFDLLIQTLPEGSD-----LAKANLK-----PRLRMITIYYIA 120

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
             + +                 +  D   D                  P+G + K+ VR+
Sbjct: 121 NTNNLLVVGTGNKTEIMVGYYTKYGDGGVD----------------ILPIGGLYKKDVRE 164

Query: 203 LAREMGLD 210
           LA+ +G+ 
Sbjct: 165 LAKVLGVP 172


>gi|307691772|ref|ZP_07634009.1| argininosuccinate synthase [Ruminococcaceae bacterium D16]
          Length = 405

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 24/131 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   LK             YN+ +          G ++       
Sbjct: 5   KKVVLAYSGGLDTSIIIPWLKE-----------NYNNPEIIAVAADVGQGDELEGLEEKA 53

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                   Y+ D  +   + VIVP          Y  G          R +    L+ + 
Sbjct: 54  IKTGASKLYIEDLTDEMVDDVIVPSMMMGAKYEEYLLGTAFA------RPIIAKRLVEIA 107

Query: 134 RQLGADVLATG 144
           ++ GAD +  G
Sbjct: 108 KKEGADAICHG 118


>gi|258654593|ref|YP_003203749.1| NAD synthetase [Nakamurella multipartita DSM 44233]
 gi|258557818|gb|ACV80760.1| NAD+ synthetase [Nakamurella multipartita DSM 44233]
          Length = 328

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 77/224 (34%), Gaps = 56/224 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--------QLYNSRKASKRKGSCCAGQDV 73
           VVA+SGG+DSS+VAAL  R  G + V G+ +         L  S+  S   G     +D+
Sbjct: 39  VVALSGGIDSSLVAALAVRALGPERVFGLHMPERESSNETLAISQSVSDTFGIDSVVEDI 98

Query: 74  -------------YDA-RRVCDTINVSHY-------VFDYEE--RFRNAVIVP--FASSY 108
                         DA R VC               V D  +   +   V+ P    +SY
Sbjct: 99  TAPLEAFGAYRRRDDAIRLVCPEYGPGFRSKIVLPSVVDSHQLRLYSVVVVDPSGLETSY 158

Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168
              +     +      K        R+      A  +Y   RL     G        P  
Sbjct: 159 RLSQNAYLGIVAATNFK-----QRVRK------AFEYYHADRLNYATSGT-------PNR 200

Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212
           LE DQ +F+             P+  + K  V  LA+ +G+  A
Sbjct: 201 LEYDQGFFV-KLGDGAAD--IKPIAHLYKSQVYALAKHLGVPKA 241


>gi|206603533|gb|EDZ40013.1| Argininosuccinate synthase [Leptospirillum sp. Group II '5-way CG']
          Length = 408

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+SV+   LK   G  V+                     G+D+ +  R
Sbjct: 9   PGKVVLAYSGGLDTSVIMTWLKEKYGCQVVA-------------YCADLGQGEDLEEISR 55

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS---YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                     YV D  E F    + P   S   Y  G      +   R +     + + R
Sbjct: 56  KAFRTGASKVYVRDLREEFVKDFLFPMIQSGAVYEDGYLLGTSIA--RPLIAKAQMEIAR 113

Query: 135 QLGADVLATG 144
             GAD +A G
Sbjct: 114 LEGADAVAHG 123


>gi|254425193|ref|ZP_05038911.1| exsB protein [Synechococcus sp. PCC 7335]
 gi|196192682|gb|EDX87646.1| exsB protein [Synechococcus sp. PCC 7335]
          Length = 243

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV +SGG+DS+  AA    DGYDVI ++   Y  R            +++  AR +  
Sbjct: 6  KAVVLLSGGLDSATCAAQAIADGYDVIALSF-NYGQR----------HDRELLAARELVS 54

Query: 82 TINV-SHYVFD 91
           +++  H + D
Sbjct: 55 ALDITEHQIID 65


>gi|124516707|gb|EAY58215.1| Argininosuccinate synthase [Leptospirillum rubarum]
          Length = 408

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+SV+   LK   G  V+                     G+D+ +  R
Sbjct: 9   PGKVVLAYSGGLDTSVIMTWLKEKYGCQVVA-------------YCADLGQGEDLEEISR 55

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS---YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                     YV D  E F    + P   S   Y  G      +   R +     + + R
Sbjct: 56  KAFRTGASKVYVRDLREEFVKDFLFPMIQSGAVYEDGYLLGTSIA--RPLIAKAQMEIAR 113

Query: 135 QLGADVLATG 144
             GAD +A G
Sbjct: 114 LEGADAVAHG 123


>gi|108803659|ref|YP_643596.1| GMP synthase [Rubrobacter xylanophilus DSM 9941]
 gi|108764902|gb|ABG03784.1| GMP synthase (glutamine-hydrolyzing) [Rubrobacter xylanophilus DSM
           9941]
          Length = 506

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 28/190 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R + A+SGGVDS+  A L+ R  G  +  V     +     + +          +A    
Sbjct: 213 RAICALSGGVDSATAAMLVHRAIGDKLTCVF---VDHGLLRQNEAEQVVEAFRREA---- 265

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +     D  ERF +           AG T     +  R +   + + V  +    +
Sbjct: 266 ---GLPLVHVDARERFLDR---------LAGVT---DPEAKRKIVGEEFIRVFEEEAGKI 310

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
                 ++  LY        R   R           +    +    +L  PL ++ K+ V
Sbjct: 311 RDARFLVQGTLYSDVIESGTRDAARIKSHHN-----VGGLPEVMDLELVEPLRNLFKDEV 365

Query: 201 RDLAREMGLD 210
           R +A E+G+ 
Sbjct: 366 RVVAAELGMP 375


>gi|52696139|pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
 gi|52696140|pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
 gi|52696141|pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
 gi|52696142|pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
          Length = 421

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   G+DVI     +         K           A +V  
Sbjct: 16  KVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTG----ASKV-- 69

Query: 82  TINVSHYVFDYEERFRNAVI-----VPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 YV D    F    I             Y  G      +   R V       +  
Sbjct: 70  ------YVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQV------EIAE 117

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 118 KEGAQYVAHG 127


>gi|297526784|ref|YP_003668808.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255700|gb|ADI31909.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 331

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 31/139 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-------- 73
            +VVA+SGG DS    +LL           L   + R    R  +    + +        
Sbjct: 50  HIVVAVSGGKDS---LSLLH---------YLYNLSKRVPGWRITALLIDEGIRGYRDITK 97

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDCNRTVKFSD 128
            D  RV + + V + +  +EE F                   G   LPC  C    ++  
Sbjct: 98  KDFLRVVNELGVDYKIASFEEYF-----GYTLDEIVRIGREKGLPYLPCSYCGVFRRY-L 151

Query: 129 LLSVTRQLGADVLATGHYI 147
           L  V R+LG  VLAT H +
Sbjct: 152 LNKVARELGGTVLATAHNL 170


>gi|324328541|gb|ADY23801.1| thiamine biosynthesis protein ThiI [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|281412457|ref|YP_003346536.1| argininosuccinate synthase [Thermotoga naphthophila RKU-10]
 gi|281373560|gb|ADA67122.1| argininosuccinate synthase [Thermotoga naphthophila RKU-10]
          Length = 409

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   G+DVI     +         K           A +V  
Sbjct: 4   KVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTG----ASKV-- 57

Query: 82  TINVSHYVFDYEERFRNAVI-----VPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 YV D    F    I             Y  G      +   R V       +  
Sbjct: 58  ------YVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQV------EIAE 105

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 106 KEGAQYVAHG 115


>gi|228954917|ref|ZP_04116935.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804738|gb|EEM51339.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229076149|ref|ZP_04209117.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock4-18]
 gi|229099107|ref|ZP_04230041.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-29]
 gi|229105275|ref|ZP_04235924.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-28]
 gi|229118137|ref|ZP_04247496.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock1-3]
 gi|228665360|gb|EEL20843.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock1-3]
 gi|228678201|gb|EEL32429.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-28]
 gi|228684335|gb|EEL38279.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-29]
 gi|228707012|gb|EEL59217.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock4-18]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229141384|ref|ZP_04269922.1| thiamine biosynthesis protein thiI [Bacillus cereus BDRD-ST26]
 gi|228642165|gb|EEK98458.1| thiamine biosynthesis protein thiI [Bacillus cereus BDRD-ST26]
          Length = 403

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 177 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 233

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 234 CKR--VTLHLVPFTE 246


>gi|229147208|ref|ZP_04275566.1| thiamine biosynthesis protein thiI [Bacillus cereus BDRD-ST24]
 gi|228636318|gb|EEK92790.1| thiamine biosynthesis protein thiI [Bacillus cereus BDRD-ST24]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229163640|ref|ZP_04291589.1| thiamine biosynthesis protein thiI [Bacillus cereus R309803]
 gi|228619890|gb|EEK76767.1| thiamine biosynthesis protein thiI [Bacillus cereus R309803]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229072150|ref|ZP_04205359.1| thiamine biosynthesis protein thiI [Bacillus cereus F65185]
 gi|229081900|ref|ZP_04214392.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock4-2]
 gi|229180966|ref|ZP_04308301.1| thiamine biosynthesis protein thiI [Bacillus cereus 172560W]
 gi|228602523|gb|EEK60009.1| thiamine biosynthesis protein thiI [Bacillus cereus 172560W]
 gi|228701488|gb|EEL53982.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock4-2]
 gi|228711084|gb|EEL63050.1| thiamine biosynthesis protein thiI [Bacillus cereus F65185]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229186906|ref|ZP_04314061.1| thiamine biosynthesis protein thiI [Bacillus cereus BGSC 6E1]
 gi|228596643|gb|EEK54308.1| thiamine biosynthesis protein thiI [Bacillus cereus BGSC 6E1]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229192851|ref|ZP_04319809.1| thiamine biosynthesis protein thiI [Bacillus cereus ATCC 10876]
 gi|228590690|gb|EEK48551.1| thiamine biosynthesis protein thiI [Bacillus cereus ATCC 10876]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|218232220|ref|YP_002369442.1| thiamine biosynthesis protein ThiI [Bacillus cereus B4264]
 gi|228923396|ref|ZP_04086684.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228960915|ref|ZP_04122548.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048354|ref|ZP_04193922.1| thiamine biosynthesis protein thiI [Bacillus cereus AH676]
 gi|229112113|ref|ZP_04241656.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock1-15]
 gi|229152842|ref|ZP_04281025.1| thiamine biosynthesis protein thiI [Bacillus cereus m1550]
 gi|296505116|ref|YP_003666816.1| thiamine biosynthesis protein ThiI [Bacillus thuringiensis BMB171]
 gi|226703941|sp|B7H703|THII_BACC4 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|218160177|gb|ACK60169.1| thiamine biosynthesis protein ThiI [Bacillus cereus B4264]
 gi|228630662|gb|EEK87308.1| thiamine biosynthesis protein thiI [Bacillus cereus m1550]
 gi|228671436|gb|EEL26737.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock1-15]
 gi|228723079|gb|EEL74456.1| thiamine biosynthesis protein thiI [Bacillus cereus AH676]
 gi|228798811|gb|EEM45791.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228836350|gb|EEM81703.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326168|gb|ADH09096.1| thiamine biosynthesis protein ThiI [Bacillus thuringiensis BMB171]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|206969922|ref|ZP_03230876.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cereus AH1134]
 gi|206735610|gb|EDZ52778.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cereus AH1134]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|206977560|ref|ZP_03238454.1| exsB protein [Bacillus cereus H3081.97]
 gi|217958916|ref|YP_002337464.1| exsB protein [Bacillus cereus AH187]
 gi|222095073|ref|YP_002529133.1| aluminum resistance protein [Bacillus cereus Q1]
 gi|254764306|sp|B7HK63|QUEC_BACC7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764307|sp|B9IUT0|QUEC_BACCQ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|206744278|gb|EDZ55691.1| exsB protein [Bacillus cereus H3081.97]
 gi|217065877|gb|ACJ80127.1| exsB protein [Bacillus cereus AH187]
 gi|221239131|gb|ACM11841.1| possible aluminum resistance protein [Bacillus cereus Q1]
          Length = 220

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAMEQFAEVEAVTF-NYNQR--HKLEIDC--------AAE 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|49478716|ref|YP_038696.1| thiamine biosynthesis protein ThiI [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|206977173|ref|ZP_03238072.1| thiamine biosynthesis protein ThiI [Bacillus cereus H3081.97]
 gi|217962135|ref|YP_002340705.1| thiamine biosynthesis protein ThiI [Bacillus cereus AH187]
 gi|222098121|ref|YP_002532178.1| thiamine biosynthesis protein thii [Bacillus cereus Q1]
 gi|81394601|sp|Q6HCN0|THII_BACHK RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|226703942|sp|B7HSI4|THII_BACC7 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|254784219|sp|B9J151|THII_BACCQ RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|49330272|gb|AAT60918.1| thiamine biosynthesis protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|206744658|gb|EDZ56066.1| thiamine biosynthesis protein ThiI [Bacillus cereus H3081.97]
 gi|217066178|gb|ACJ80428.1| thiamine biosynthesis protein ThiI [Bacillus cereus AH187]
 gi|221242179|gb|ACM14889.1| thiamine biosynthesis protein [Bacillus cereus Q1]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|83595993|gb|ABC25352.1| NH(3)-dependent NAD(+) synthetase [uncultured marine bacterium
           Ant29B7]
          Length = 341

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 35/190 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC-DT 82
           V+ +SGGVDS++ A L       + G+ L+L       +       G+D+ DA  +C   
Sbjct: 98  VLGVSGGVDSALTAHLCA-----LTGLELRLM-ELPIHQPPSHVQRGKDMIDA--LCGKH 149

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V+    D  + F   +     +  +   T L  ++    ++ + L +  +  G  V+ 
Sbjct: 150 AQVTSRCVDLTDLFDQHL--EALNLPSGRLTQLALINTRARLRMTTLYAEAQAHGLLVVG 207

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG+       V D G          D   D                  P+ D+ K  V+ 
Sbjct: 208 TGN------KVEDFGIGFYTKY--GDGGVD----------------LSPIADLTKSEVQA 243

Query: 203 LAREMGLDIA 212
           LAR +G+  A
Sbjct: 244 LARFVGVPAA 253


>gi|42783830|ref|NP_981077.1| thiamine biosynthesis protein ThiI [Bacillus cereus ATCC 10987]
 gi|81408868|sp|Q72Z85|THII_BACC1 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|42739760|gb|AAS43685.1| thiamine biosynthesis protein ThiI [Bacillus cereus ATCC 10987]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|83754678|pdb|2C5S|A Chain A, Crystal Structure Of Bacillus Anthracis Thii, A Trna-
           Modifying Enzyme Containing The Predicted Rna-Binding
           Thump Domain
          Length = 413

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 187 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 243

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 244 CKR--VTLHLVPFTE 256


>gi|30264721|ref|NP_847098.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. Ames]
 gi|47778341|ref|YP_021542.2| thiamine biosynthesis protein ThiI [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|33301702|sp|Q81KU0|THII_BACAN RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|30259396|gb|AAP28584.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           anthracis str. Ames]
 gi|47552046|gb|AAT34017.2| thiamine biosynthesis protein ThiI [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 403

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 177 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 233

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 234 CKR--VTLHLVPFTE 246


>gi|30022722|ref|NP_834353.1| thiamine biosynthesis protein ThiI [Bacillus cereus ATCC 14579]
 gi|229129931|ref|ZP_04258897.1| thiamine biosynthesis protein thiI [Bacillus cereus BDRD-Cer4]
 gi|33301700|sp|Q817B1|THII_BACCR RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|29898281|gb|AAP11554.1| Thiamine biosynthesis protein thiI [Bacillus cereus ATCC 14579]
 gi|228653622|gb|EEL09494.1| thiamine biosynthesis protein thiI [Bacillus cereus BDRD-Cer4]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|15644525|ref|NP_229577.1| argininosuccinate synthase [Thermotoga maritima MSB8]
 gi|24211540|sp|Q9X2A1|ASSY_THEMA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|4982360|gb|AAD36844.1|AE001816_1 argininosuccinate synthase [Thermotoga maritima MSB8]
          Length = 409

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L   G+DVI     +         K           A +V  
Sbjct: 4   KVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTG----ASKV-- 57

Query: 82  TINVSHYVFDYEERFRNAVI-----VPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 YV D    F    I             Y  G      +   R V       +  
Sbjct: 58  ------YVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQV------EIAE 105

Query: 135 QLGADVLATG 144
           + GA  +A G
Sbjct: 106 KEGAQYVAHG 115


>gi|152977014|ref|YP_001376531.1| thiamine biosynthesis protein ThiI [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189030620|sp|A7GTS8|THII_BACCN RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|152025766|gb|ABS23536.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cytotoxicus NVH 391-98]
          Length = 403

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|47565062|ref|ZP_00236105.1| thiamine biosynthesis protein ThiI [Bacillus cereus G9241]
 gi|52140860|ref|YP_085969.1| thiamine biosynthesis protein ThiI [Bacillus cereus E33L]
 gi|228987898|ref|ZP_04148006.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158255|ref|ZP_04286322.1| thiamine biosynthesis protein thiI [Bacillus cereus ATCC 4342]
 gi|81685899|sp|Q633E8|THII_BACCZ RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|47557848|gb|EAL16173.1| thiamine biosynthesis protein ThiI [Bacillus cereus G9241]
 gi|51974329|gb|AAU15879.1| thiamine biosynthesis protein [Bacillus cereus E33L]
 gi|228625213|gb|EEK81973.1| thiamine biosynthesis protein thiI [Bacillus cereus ATCC 4342]
 gi|228771821|gb|EEM20279.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|49187539|ref|YP_030792.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. Sterne]
 gi|65322018|ref|ZP_00394977.1| COG0301: Thiamine biosynthesis ATP pyrophosphatase [Bacillus
           anthracis str. A2012]
 gi|118479788|ref|YP_896939.1| thiamine biosynthesis protein ThiI [Bacillus thuringiensis str. Al
           Hakam]
 gi|165869763|ref|ZP_02214421.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0488]
 gi|167633806|ref|ZP_02392129.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0442]
 gi|167638047|ref|ZP_02396325.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0193]
 gi|170685994|ref|ZP_02877217.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0465]
 gi|170705487|ref|ZP_02895951.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0389]
 gi|177651153|ref|ZP_02933984.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0174]
 gi|190569065|ref|ZP_03021965.1| thiamine biosynthesis protein ThiI [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032869|ref|ZP_03100282.1| thiamine biosynthesis protein ThiI [Bacillus cereus W]
 gi|196040790|ref|ZP_03108088.1| thiamine biosynthesis protein ThiI [Bacillus cereus NVH0597-99]
 gi|196043841|ref|ZP_03111078.1| thiamine biosynthesis protein ThiI [Bacillus cereus 03BB108]
 gi|218905877|ref|YP_002453711.1| thiamine biosynthesis protein ThiI [Bacillus cereus AH820]
 gi|225866628|ref|YP_002752006.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cereus 03BB102]
 gi|227817438|ref|YP_002817447.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           anthracis str. CDC 684]
 gi|228917293|ref|ZP_04080848.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929701|ref|ZP_04092718.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935957|ref|ZP_04098767.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948377|ref|ZP_04110660.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093743|ref|ZP_04224842.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-42]
 gi|229124217|ref|ZP_04253409.1| thiamine biosynthesis protein thiI [Bacillus cereus 95/8201]
 gi|229604388|ref|YP_002868929.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           anthracis str. A0248]
 gi|254687459|ref|ZP_05151315.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725022|ref|ZP_05186805.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A1055]
 gi|254736759|ref|ZP_05194465.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741796|ref|ZP_05199483.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. Kruger
           B]
 gi|254754606|ref|ZP_05206641.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. Vollum]
 gi|254757438|ref|ZP_05209465.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str.
           Australia 94]
 gi|300118479|ref|ZP_07056222.1| thiamine biosynthesis protein ThiI [Bacillus cereus SJ1]
 gi|301056155|ref|YP_003794366.1| thiamine biosynthesis protein ThiI [Bacillus anthracis CI]
 gi|189030619|sp|A0RJN9|THII_BACAH RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|226703939|sp|B7JS23|THII_BACC0 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|254784216|sp|C3PBB3|THII_BACAA RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|254784217|sp|C3L9V4|THII_BACAC RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|254784218|sp|C1EUZ5|THII_BACC3 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|49181466|gb|AAT56842.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. Sterne]
 gi|118419013|gb|ABK87432.1| thiamine biosynthesis protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164714592|gb|EDR20111.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0488]
 gi|167513864|gb|EDR89232.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0193]
 gi|167530607|gb|EDR93309.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0442]
 gi|170129612|gb|EDS98475.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0389]
 gi|170670458|gb|EDT21198.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0465]
 gi|172082979|gb|EDT68041.1| thiamine biosynthesis protein ThiI [Bacillus anthracis str. A0174]
 gi|190559847|gb|EDV13832.1| thiamine biosynthesis protein ThiI [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994298|gb|EDX58253.1| thiamine biosynthesis protein ThiI [Bacillus cereus W]
 gi|196025177|gb|EDX63847.1| thiamine biosynthesis protein ThiI [Bacillus cereus 03BB108]
 gi|196028244|gb|EDX66853.1| thiamine biosynthesis protein ThiI [Bacillus cereus NVH0597-99]
 gi|218540024|gb|ACK92422.1| thiamine biosynthesis protein ThiI [Bacillus cereus AH820]
 gi|225790990|gb|ACO31207.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           cereus 03BB102]
 gi|227007059|gb|ACP16802.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           anthracis str. CDC 684]
 gi|228659519|gb|EEL15167.1| thiamine biosynthesis protein thiI [Bacillus cereus 95/8201]
 gi|228689628|gb|EEL43436.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-42]
 gi|228811364|gb|EEM57702.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823725|gb|EEM69547.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829880|gb|EEM75500.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842334|gb|EEM87427.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268796|gb|ACQ50433.1| thiamine biosynthesis/tRNA modification protein ThiI [Bacillus
           anthracis str. A0248]
 gi|298724151|gb|EFI64850.1| thiamine biosynthesis protein ThiI [Bacillus cereus SJ1]
 gi|300378324|gb|ADK07228.1| thiamine biosynthesis protein ThiI [Bacillus cereus biovar
           anthracis str. CI]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|323140990|ref|ZP_08075900.1| argininosuccinate synthase [Phascolarctobacterium sp. YIT 12067]
 gi|322414527|gb|EFY05336.1| argininosuccinate synthase [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYD-A 76
            +VV+A SGG+D+SV+   LK   Y   +VI           A    G     + V+D A
Sbjct: 19  KKVVLAYSGGLDTSVIIPWLKEH-YNNCEVIA----------ACADLGQGDELEPVHDKA 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDL 129
            +   +     Y+ D +E F +  + P           Y  G +        R +    L
Sbjct: 68  LKTGAS---KCYIMDLKEEFISDYVWPTVKAGAVYEKKYLLGTSFA------RPLIAKKL 118

Query: 130 LSVTRQLGADVLATG 144
           + +  + GAD +A G
Sbjct: 119 VEIAEKEGADAIAHG 133


>gi|307259409|ref|ZP_07541134.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306866345|gb|EFM98208.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 482

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGNF 367


>gi|307250326|ref|ZP_07532276.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857653|gb|EFM89759.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 482

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGNF 367


>gi|307245992|ref|ZP_07528074.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254971|ref|ZP_07536790.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306852927|gb|EFM85150.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862089|gb|EFM94064.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
          Length = 482

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGNF 367


>gi|303250178|ref|ZP_07336380.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252710|ref|ZP_07534601.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651241|gb|EFL81395.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859742|gb|EFM91764.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 482

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGNF 367


>gi|289451214|gb|ADC94128.1| PP-loop superfamily protein [Leptospira interrogans serovar
           Hebdomadis]
          Length = 380

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 33/203 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS +A L K+      G+   L++       + +    + + D       +
Sbjct: 73  ILGISGGVDSSYLAYLAKKK----FGLRPLLFHVDAGWNSQEAVNNIEKIVDGL----KL 124

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   V ++EE  ++  +  F +     +TP         V F+ L +   + G   +  
Sbjct: 125 DLITEVVNWEEM-KDLQLSFFKAGVPHLDTPQ------DHVFFASLYNYCAKHGFLYILN 177

Query: 144 GHYIRSR--------LYVGDDGKRRRIMCRPMDLERDQSY-----FLFATTQQQLCDL-- 188
           G    +          Y   D ++ + + R     + +++     F +         L  
Sbjct: 178 GGNYSTECIREPLEWHYHASDLRQLKDIHRRFGTRKLKTFPLTGIFKYKVYYGIFKRLKV 237

Query: 189 RFPLGD--MKKES-VRDLAREMG 208
             PL      KE  +R+L  + G
Sbjct: 238 VQPLNYIPYTKEEAIRELETKFG 260


>gi|229102039|ref|ZP_04232752.1| hypothetical protein bcere0019_12040 [Bacillus cereus Rock3-28]
 gi|228681426|gb|EEL35590.1| hypothetical protein bcere0019_12040 [Bacillus cereus Rock3-28]
          Length = 223

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AVEIAKELGIKHTVLDMS 68


>gi|229114878|ref|ZP_04244291.1| hypothetical protein bcere0017_11750 [Bacillus cereus Rock1-3]
 gi|228668570|gb|EEL23999.1| hypothetical protein bcere0017_11750 [Bacillus cereus Rock1-3]
          Length = 223

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AVEIAKELGIKHTVLDMS 68


>gi|229189522|ref|ZP_04316538.1| hypothetical protein bcere0002_12010 [Bacillus cereus ATCC 10876]
 gi|228593967|gb|EEK51770.1| hypothetical protein bcere0002_12010 [Bacillus cereus ATCC 10876]
          Length = 223

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AVEIAKELGIKHTVLDMS 68


>gi|193216506|ref|YP_001999748.1| thiamine biosynthesis protein ThiI [Mycoplasma arthritidis 158L3-1]
 gi|238692471|sp|B3PLZ2|THII_MYCA5 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|193001829|gb|ACF07044.1| thiamine biosynthesis protein [Mycoplasma arthritidis 158L3-1]
          Length = 381

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  MSGG+DS V A LL++ G     +    + +   +  K +    + +   + +   
Sbjct: 170 VLHLMSGGIDSPVAAYLLQKRGLR---INFLNFITPPHTDEKTTQKVDELI---KVIAKY 223

Query: 83  IN-VSHYVFDYEE 94
                 Y  ++ +
Sbjct: 224 QGSAKLYQVNFTD 236


>gi|15899931|ref|NP_344536.1| GMP synthase PP-ATPase subunit [Sulfolobus solfataricus P2]
 gi|284173893|ref|ZP_06387862.1| GMP synthase PP-ATPase subunit [Sulfolobus solfataricus 98/2]
 gi|44887908|sp|Q97TZ8|GUAAB_SULSO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|13816676|gb|AAK43326.1| GMP synthase, PP-ATPase domain (guaA) [Sulfolobus solfataricus P2]
 gi|261601607|gb|ACX91210.1| GMP synthase (glutamine-hydrolyzing) [Sulfolobus solfataricus 98/2]
          Length = 367

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 48/216 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            L +   + +V+ A+SGGVDS+  A L     Y+++G         K           + 
Sbjct: 14  QLRQKLGNEKVLAAVSGGVDSTTAAVLA----YNLLG--------DKVIPVLVDTGFLRK 61

Query: 73  VYDARRVCDTI-NV--SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             +A ++ D + N+  +  + D +E F + +          G          +  +F +L
Sbjct: 62  -NEAEKIKDYLSNILPNLIIVDKKETFISEI---------EGIDDAEM----KRKRFREL 107

Query: 130 L-----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR--PMDLERDQSYFLFATTQ 182
                 S+ ++  A  L  G      +      K +  +     +D E++  +       
Sbjct: 108 FYSTISSLMKKFNARYLMQGTIAADWVETQGGIKTQHNVLVQIGIDTEKEWGFT------ 161

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
                L  PL D+ K  VR+LAR + L   + S+ Q
Sbjct: 162 -----LIEPLADLYKNEVRELARYLKLP-KEISERQ 191


>gi|65318709|ref|ZP_00391668.1| COG0603: Predicted PP-loop superfamily ATPase [Bacillus anthracis
          str. A2012]
 gi|228926470|ref|ZP_04089542.1| hypothetical protein bthur0010_11890 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228932722|ref|ZP_04095594.1| hypothetical protein bthur0009_11980 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228945038|ref|ZP_04107399.1| hypothetical protein bthur0007_12040 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229120979|ref|ZP_04250221.1| hypothetical protein bcere0016_12880 [Bacillus cereus 95/8201]
 gi|229183633|ref|ZP_04310856.1| hypothetical protein bcere0004_12050 [Bacillus cereus BGSC 6E1]
 gi|228599876|gb|EEK57473.1| hypothetical protein bcere0004_12050 [Bacillus cereus BGSC 6E1]
 gi|228662639|gb|EEL18237.1| hypothetical protein bcere0016_12880 [Bacillus cereus 95/8201]
 gi|228814707|gb|EEM60967.1| hypothetical protein bthur0007_12040 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228826927|gb|EEM72689.1| hypothetical protein bthur0009_11980 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228833294|gb|EEM78859.1| hypothetical protein bthur0010_11890 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
          Length = 223

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+           +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AVEIAKELGIKHTVLDMS 68


>gi|302772965|ref|XP_002969900.1| hypothetical protein SELMODRAFT_93014 [Selaginella moellendorffii]
 gi|300162411|gb|EFJ29024.1| hypothetical protein SELMODRAFT_93014 [Selaginella moellendorffii]
          Length = 533

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 29/198 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   + A+SGGVDSSV A L+ +  G  +  V          +         + +   +R
Sbjct: 227 DEHAICALSGGVDSSVAATLVHKALGDRLHCVF-------VDNGLLRYKEQERVMETFKR 279

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D    F +    V  P       G   +   D     KF+  L     
Sbjct: 280 ---ELHLPVVCVDASTDFLSRLRGVTDPEQKRKIIGAQFISVFD-----KFASHLEEELG 331

Query: 136 LGADVLATGHY---IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             A  L  G     +         GK      +           +    +     L  PL
Sbjct: 332 KTATFLVQGTLYPDVIESCPPPGSGKGHSHTIKSHHN-------VGGLPEVMKLKLLEPL 384

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR L + +G+ 
Sbjct: 385 KWLFKDEVRKLGKLLGVP 402


>gi|322419189|ref|YP_004198412.1| NAD+ synthetase [Geobacter sp. M18]
 gi|320125576|gb|ADW13136.1| NAD+ synthetase [Geobacter sp. M18]
          Length = 328

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTL-QLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ +SGG+DSSV AAL  R  G + V+G+ + + ++S++  +   +      +       
Sbjct: 38  VIGLSGGIDSSVTAALAVRAIGRERVLGLEMPEFHSSKETPELSSTLVRHLGIE-----S 92

Query: 81  DTINVS--HYVFDYEERFRNAVIVPFASSYAAG 111
             I++S       +   +  AV       Y  G
Sbjct: 93  RQIDISPILEAVGFYADYDEAV-RMVIPEYGTG 124


>gi|196230867|ref|ZP_03129728.1| exsB protein [Chthoniobacter flavus Ellin428]
 gi|196225208|gb|EDY19717.1| exsB protein [Chthoniobacter flavus Ellin428]
          Length = 232

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 12/73 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          +VVV +SGG+DS  VAAL      + V+G           S   GS    +++  A   C
Sbjct: 5  KVVVLVSGGMDS--VAALYHTQAEHPVVGA---------LSFDYGSKHNHKEIPLAAYHC 53

Query: 81 DTINVSHYVFDYE 93
          + + V H V    
Sbjct: 54 ERLGVPHRVIPLS 66


>gi|251798293|ref|YP_003013024.1| exsB protein [Paenibacillus sp. JDR-2]
 gi|247545919|gb|ACT02938.1| exsB protein [Paenibacillus sp. JDR-2]
          Length = 221

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   +N  +    +  C        A +
Sbjct: 2  KKGKAVVVFSGGQDSTTCLFWALERYEEVEAVT---FNYGQRHALELEC--------AAQ 50

Query: 79 VCDTINVSHYVFDYE 93
          + + + V H+V D  
Sbjct: 51 IAEELGVRHHVLDMS 65


>gi|197102364|ref|NP_001126469.1| asparagine synthetase [glutamine-hydrolyzing] [Pongo abelii]
 gi|75041326|sp|Q5R6W9|ASNS_PONAB RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|55731565|emb|CAH92491.1| hypothetical protein [Pongo abelii]
          Length = 561

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  +R     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEARVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 299 ARKVADHIGSEHYEVLFNSE 318


>gi|172047903|sp|A5GX16|ASSY_SYNR3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
          Length = 405

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 60/201 (29%), Gaps = 37/201 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGGVD+SV    LK +           +   +          G ++   R+   
Sbjct: 6   KVVLAYSGGVDTSVCIPYLKHE-----------WGVEEVITFAADLGQGDELEPIRQKAL 54

Query: 82  TINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
               S  +  D  E F      P   + A  E   P      R +    L+ + R++GAD
Sbjct: 55  DAGASQSLVGDLIEPFITEFAFPAIRANALYEGRYPLSTALARPLIARRLVEIAREVGAD 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPL--GDMK 196
            +A G                   C       DQ  F  A         +  P     M 
Sbjct: 115 AVAHG-------------------CTGK--GNDQVRFDVAIGALAPDLKVLTPAREWGMS 153

Query: 197 KESVRDLAREMGLDIADKSDS 217
           +E         GL       S
Sbjct: 154 REETIAYGERYGLPSPVSKRS 174


>gi|134046630|ref|YP_001098115.1| argininosuccinate synthase [Methanococcus maripaludis C5]
 gi|132664255|gb|ABO35901.1| argininosuccinate synthase [Methanococcus maripaludis C5]
          Length = 397

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y VI V                    +D+ +    
Sbjct: 4   KIAVLAYSGGLDTSCCLKLLEDKYDYKVISV------------AVDVGQPEEDLIEPEEK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
                V  HY  D +E F    I     + A  E  PL        +       +  ++G
Sbjct: 52  AKKFGVLKHYTIDAKEEFAKDYIFRAIKANALYEGYPLSTALARPLIAIKI-AELAEEVG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  ++ G         G+D  R   + R    E +    +       L            
Sbjct: 111 ASAISHG-----CTGKGNDQFRFESVMRAKTPEIE---IVAPIRDLNLTRT--------- 153

Query: 198 ESVRDLAREMGLDIADKSD 216
           E + + A+E G+ +    +
Sbjct: 154 EEI-EYAKEKGIPVPVDLE 171


>gi|121598487|ref|YP_992972.1| hypothetical protein BMASAVP1_A1646 [Burkholderia mallei SAVP1]
 gi|124385304|ref|YP_001026310.1| asparagine synthase [Burkholderia mallei NCTC 10229]
 gi|238563811|ref|ZP_04610749.1| asparagine synthase family protein [Burkholderia mallei GB8 horse
           4]
 gi|251768105|ref|ZP_02269494.2| asparagine synthase family protein [Burkholderia mallei PRL-20]
 gi|121227297|gb|ABM49815.1| hypothetical protein BMASAVP1_A1646 [Burkholderia mallei SAVP1]
 gi|238519922|gb|EEP83387.1| asparagine synthase family protein [Burkholderia mallei GB8 horse
           4]
 gi|243060810|gb|EES42996.1| asparagine synthase family protein [Burkholderia mallei PRL-20]
          Length = 422

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 176 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 225

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 226 ADSIGARLICIDIDRHLPFSERIV 249


>gi|85057857|ref|YP_456773.1| thiamine biosynthesis protein ThiI [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789962|gb|ABC65694.1| thiamine biosynthesis protein ThiI [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 434

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV----C 80
           V MSGG+DS V A L  R G  V  +          S       + Q V D  +V     
Sbjct: 191 VLMSGGIDSPVAAYLAMRKGITVELLHF-------ESSPLTPLESIQKVIDLAKVLSRYA 243

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSY 108
               +  ++  +   F+  +      SY
Sbjct: 244 FGNQIKLHLVPFR-YFQEKITKTVLDSY 270


>gi|220931138|ref|YP_002508046.1| Argininosuccinate synthase [Halothermothrix orenii H 168]
 gi|219992448|gb|ACL69051.1| Argininosuccinate synthase [Halothermothrix orenii H 168]
          Length = 413

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 38/202 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV    L+             +N+   +          D    +    
Sbjct: 6   KIVLAYSGGLDTSVSIKWLQEK-----------FNAEIIAYSANVGQDDNDWNQIKEKAL 54

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139
                  Y+ D  E F          +    E   P     +R +    ++ V  Q GA+
Sbjct: 55  KAGASKVYIDDIREEFIKNYAFNSLKANGLYEGKYPLATALSRPLIAKRMVEVAHQEGAE 114

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K- 197
            +A G                    +  D  R    F       ++     PL + + K 
Sbjct: 115 AVAHG-----------------CTGKGNDQVRFDVSFKALDPDLEI---IAPLREWEFKS 154

Query: 198 --ESVRDLAREMGLDIADKSDS 217
             E + D A++  + +    +S
Sbjct: 155 RGEEI-DYAKKHNIPVKATKES 175


>gi|53723445|ref|YP_102883.1| hypothetical protein BMA1202 [Burkholderia mallei ATCC 23344]
 gi|52426868|gb|AAU47461.1| hypothetical protein BMA1202 [Burkholderia mallei ATCC 23344]
          Length = 469

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 223 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 272

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 273 ADSIGARLICIDIDRHLPFSERIV 296


>gi|297161112|gb|ADI10824.1| NH(3)-dependent NAD(+) synthetase [Streptomyces bingchenggensis
           BCW-1]
          Length = 585

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV +                +   + DA  + 
Sbjct: 329 VLIGLSGGIDSALVAAIACDAVGAQNVYGVAM-----------PSRYSSEHSIADAAELA 377

Query: 81  DTINVSHYVFDYEERF 96
               ++         F
Sbjct: 378 RRTGLNFRTVPIAPMF 393


>gi|296242462|ref|YP_003649949.1| thiamine biosynthesis protein [Thermosphaera aggregans DSM 11486]
 gi|296095046|gb|ADG90997.1| thiamine biosynthesis protein [Thermosphaera aggregans DSM 11486]
          Length = 381

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 40/196 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV  SGGVDS++ + L  + G  +I V +        S    S    + +   + V +  
Sbjct: 176 VVLFSGGVDSALASILAVKRGVRIIPVFI------DMSPYWSSMAVERAMEGLKLVAEK- 228

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTV-KFSDLLSVTRQLGADV 140
            +           +  ++       A  + P    C+ C  T+ K + L+    +   D 
Sbjct: 229 -IPWNTL------KAYIVRNTPRILANAQIPLRYRCLACKATMYKIASLV--AEKENCDF 279

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           + TG  +                         Q+     T    +  L   PL  M KE 
Sbjct: 280 IITGESLGQVAS--------------------QTPSNLKTLTGLIDKLIMRPLIFMDKEE 319

Query: 200 VRDLAREMGLDIADKS 215
           + D +R+ GL    + 
Sbjct: 320 IIDASRKTGLSTLSRE 335


>gi|184200328|ref|YP_001854535.1| GMP synthase [Kocuria rhizophila DC2201]
 gi|183580558|dbj|BAG29029.1| GMP synthetase [Kocuria rhizophila DC2201]
          Length = 532

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 27/196 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D + +  +SGGVDS+V AAL++R     IG  +T  L +     + +             
Sbjct: 227 DGKALCGLSGGVDSAVAAALVQRA----IGDRLTCVLVDHGLMRQDEVEQVEKDY----- 277

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            V  T  V  +V   ++RF  A   V  P     A G   +   +         +L    
Sbjct: 278 -VAAT-GVKLHVAREQDRFLEALKGVTDPETKRKAIGREFIRAFEAAEE----KVLRAEA 331

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           Q G  V            V   G       +           +    +    +L  PL  
Sbjct: 332 QDGEPVRFLVQGTLYPDVVESGGGEGAANIKSHHN-------VGGLPEDLQFELVEPLRA 384

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR + RE+GL 
Sbjct: 385 LFKDEVRAVGRELGLP 400


>gi|218234594|ref|YP_002366123.1| exsB protein [Bacillus cereus B4264]
 gi|254764305|sp|B7HH96|QUEC_BACC4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|218162551|gb|ACK62543.1| protein ExsB [Bacillus cereus B4264]
          Length = 220

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC--------AAE 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|30019491|ref|NP_831122.1| aluminum resistance protein [Bacillus cereus ATCC 14579]
 gi|206967667|ref|ZP_03228623.1| exsB protein [Bacillus cereus AH1134]
 gi|296502021|ref|YP_003663721.1| aluminum resistance protein [Bacillus thuringiensis BMB171]
 gi|81435436|sp|Q81G69|QUEC_BACCR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|29895035|gb|AAP08323.1| Aluminum resistance protein [Bacillus cereus ATCC 14579]
 gi|206736587|gb|EDZ53734.1| exsB protein [Bacillus cereus AH1134]
 gi|296323073|gb|ADH06001.1| aluminum resistance protein [Bacillus thuringiensis BMB171]
 gi|326939064|gb|AEA14960.1| aluminum resistance protein [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 220

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC--------AAE 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|42780532|ref|NP_977779.1| exsB protein [Bacillus cereus ATCC 10987]
 gi|47566228|ref|ZP_00237256.1| exsB protein [Bacillus cereus G9241]
 gi|49479999|ref|YP_035565.1| aluminum resistance protein [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52143996|ref|YP_082831.1| aluminum resistance protein [Bacillus cereus E33L]
 gi|196040637|ref|ZP_03107936.1| protein ExsB [Bacillus cereus NVH0597-99]
 gi|196046480|ref|ZP_03113705.1| exsB protein [Bacillus cereus 03BB108]
 gi|225863303|ref|YP_002748681.1| exsB protein [Bacillus cereus 03BB102]
 gi|301052979|ref|YP_003791190.1| putative aluminum resistance protein [Bacillus anthracis CI]
 gi|81396767|sp|Q6HLK6|QUEC_BACHK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81569836|sp|Q73BG0|QUEC_BACC1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81688847|sp|Q63E31|QUEC_BACCZ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189039061|sp|A0RBG1|QUEC_BACAH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764304|sp|C1EM49|QUEC_BACC3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|42736452|gb|AAS40387.1| exsB protein [Bacillus cereus ATCC 10987]
 gi|47556781|gb|EAL15112.1| exsB protein [Bacillus cereus G9241]
 gi|49331555|gb|AAT62201.1| possible aluminum resistance protein [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|51977465|gb|AAU19015.1| possible aluminum resistance protein [Bacillus cereus E33L]
 gi|196022664|gb|EDX61346.1| exsB protein [Bacillus cereus 03BB108]
 gi|196028427|gb|EDX67035.1| protein ExsB [Bacillus cereus NVH0597-99]
 gi|225785866|gb|ACO26083.1| protein ExsB [Bacillus cereus 03BB102]
 gi|300375148|gb|ADK04052.1| possible aluminum resistance protein [Bacillus cereus biovar
          anthracis str. CI]
 gi|324325457|gb|ADY20717.1| aluminum resistance protein [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 220

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC--------AAE 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|289432851|ref|YP_003462724.1| NAD+ synthetase [Dehalococcoides sp. GT]
 gi|288946571|gb|ADC74268.1| NAD+ synthetase [Dehalococcoides sp. GT]
          Length = 566

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V +A  L + D        +VV+ +SGG+DSS+VA +     G + V+GV +        
Sbjct: 288 VYQALLLGTRDYINKNGFKKVVIGLSGGIDSSLVATIAADALGPENVVGVIM-------- 339

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                   +   + D+  +   + +       +  F++   +   S   AG    
Sbjct: 340 ---PSRYSSAGSISDSLHLAGNLGIKTLQIPIDPLFQS--FLNTLSDVFAGTEAN 389


>gi|147669591|ref|YP_001214409.1| NH(3)-dependent NAD(+) synthetase [Dehalococcoides sp. BAV1]
 gi|146270539|gb|ABQ17531.1| NH(3)-dependent NAD(+) synthetase [Dehalococcoides sp. BAV1]
          Length = 566

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V +A  L + D        +VV+ +SGG+DSS+VA +     G + V+GV +        
Sbjct: 288 VYQALLLGTRDYINKNGFKKVVIGLSGGIDSSLVATIAADALGPENVVGVIM-------- 339

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                   +   + D+  +   + +       +  F++   +   S   AG    
Sbjct: 340 ---PSRYSSAGSISDSLHLAGNLGIKTLQIPIDPLFQS--FLNTLSDVFAGTEAN 389


>gi|262341192|ref|YP_003284047.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272529|gb|ACY40437.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 456

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 42/190 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG---YDVIG--VTLQLYN-SRKASKRKGSCCAGQDVYD 75
           ++ VA+SGG+DS V+  LL        +V     TL+           K  C     +  
Sbjct: 19  KICVAVSGGLDSMVLVNLLLDLSNIELEVAHCNFTLRNQESDEDEVFIKNFCTKKNIICH 78

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +R            ++ +                 +  L      R +++     + ++
Sbjct: 79  VKR--------FDTLNFSK-----------------KNKLSIQMAARKLRYDWFFELLKK 113

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +  D +  GH++   +           + R   ++      L    ++       PL D 
Sbjct: 114 IDYDYIVLGHHLNDSIE-----TFFLNILRGTGIK-----GLLGIPKKN-GKFIRPLSDF 162

Query: 196 KKESVRDLAR 205
            KE +   A+
Sbjct: 163 TKEEILHYAK 172


>gi|156549959|ref|XP_001603273.1| PREDICTED: similar to Argininosuccinate synthetase 1 [Nasonia
           vitripennis]
          Length = 427

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V++A SGG+D+S +   L   GYDVI                 +    +D   AR 
Sbjct: 19  ERKKVILAYSGGLDTSCILLWLIEKGYDVIA-------------YVANIGQDEDFEAARE 65

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPL-PCVDCNRTVKFSDL 129
              +I      + D  E F  + + P   S       Y  G +   PC+          L
Sbjct: 66  KALSIGAKKVIIEDLREAFVTSYVWPAVRSGLLYEGRYLLGTSLARPCIS-------EGL 118

Query: 130 LSVTRQLGADVLATG 144
           +   R   A  ++ G
Sbjct: 119 IRAARSENAMTISHG 133


>gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925]
 gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925]
          Length = 467

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 34/138 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ----D 72
             +VVVA+SGG DS  +  +   LK +    +G+TL        +     C  G+    D
Sbjct: 23  KDKVVVAVSGGPDSICLLHILYKLKEE----LGITL-------VAAHINHCLRGEEADKD 71

Query: 73  VYDARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
               R+ C+ +N+  +V   D  +  ++  I               C    R V++    
Sbjct: 72  EEYVRKFCENLNIECFVKKEDVHKISKDRGIS--------------CEMAGREVRYEFFS 117

Query: 131 SVTRQLGADVLATGHYIR 148
            V  ++GA+ +A  H   
Sbjct: 118 EVLNKVGANKIAVAHNAN 135


>gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519]
 gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii]
          Length = 464

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 26/133 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
             +++VA+SGG DS     LL         Y+     +++Y +    K +G   A +D  
Sbjct: 19  KDKILVALSGGPDS---VCLLHALKKLETYYN-----IKIYAAHLNHKIRGI-EAQKDAL 69

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            A ++CD ++V  +           V      +YA  +  +   +  R +++  L  V  
Sbjct: 70  YAAKLCDELDVPFF-----------VKAIDVPAYAKEK-KMTLEEAARKLRYDMLFEVKN 117

Query: 135 QLGADVLATGHYI 147
           ++GA  +A  H +
Sbjct: 118 RIGAKKIAVAHNL 130


>gi|302761266|ref|XP_002964055.1| hypothetical protein SELMODRAFT_405683 [Selaginella moellendorffii]
 gi|300167784|gb|EFJ34388.1| hypothetical protein SELMODRAFT_405683 [Selaginella moellendorffii]
          Length = 569

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           D+  K  +VV+A SGG+D+SV+   L+ + Y  +  T        A   +G         
Sbjct: 218 DQWQKLNKVVLAYSGGLDTSVIVPWLREN-YGCVCFT--------ADVGQGLGELEWLEA 268

Query: 75  DARRV-CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            A+      + +     D +E F    I P      AG           ++    ++   
Sbjct: 269 KAKASGASQLIIK----DLKEEFVKDFIFPCL---RAGAVYERKYLLGTSMARPAMVDAA 321

Query: 134 RQLGADVLATG 144
           +++GAD ++ G
Sbjct: 322 KEVGADAVSHG 332


>gi|254391519|ref|ZP_05006720.1| NH(3)-dependent NAD(+) synthetase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705207|gb|EDY51019.1| NH(3)-dependent NAD(+) synthetase [Streptomyces clavuligerus ATCC
           27064]
          Length = 589

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV++                +     DA  + 
Sbjct: 331 VLIGLSGGIDSALVAAIACDAVGAQNVYGVSM-----------PSKYSSEHSKDDAAELA 379

Query: 81  DTINVSHYVFDYEERF 96
               +       E  F
Sbjct: 380 RRTGLHFRTVSIEPLF 395


>gi|224542846|ref|ZP_03683385.1| hypothetical protein CATMIT_02038 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524221|gb|EEF93326.1| hypothetical protein CATMIT_02038 [Catenibacterium mitsuokai DSM
           15897]
          Length = 407

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++ + LK + G +VI V          +   G      D  D  + 
Sbjct: 7   KKVVLAYSGGLDTSIIISWLKENYGCEVIAV----------AADVGQGAGELDGLD-EKA 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
             T    +   D +  F          + A  E          R +    L+ +  + GA
Sbjct: 56  AKTGASKYICVDCKPEFVKDFCFEAVKANALYEGKYMLGTSLARPIIAKKLVDIALEEGA 115

Query: 139 DVLATG 144
           D +  G
Sbjct: 116 DAICHG 121


>gi|187918386|ref|YP_001883949.1| glutamine-dependent NAD(+) synthetase [Borrelia hermsii DAH]
 gi|119861234|gb|AAX17029.1| glutamine-dependent NAD(+) synthetase [Borrelia hermsii DAH]
          Length = 522

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA +     G + V+GV++           KGS      V+DA+ +
Sbjct: 265 KVHLGVSGGIDSALVAYIACVALGAHRVVGVSM-----PSRFSSKGS------VFDAKEL 313

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         E  F++A+   F   Y
Sbjct: 314 ARELGFKLIDMPIESMFQSAL--EFFDGY 340


>gi|294812315|ref|ZP_06770958.1| NH 3 -dependent NAD + synthetase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440851|ref|ZP_08215585.1| NH(3)-dependent NAD(+) synthetase [Streptomyces clavuligerus ATCC
           27064]
 gi|294324914|gb|EFG06557.1| NH 3 -dependent NAD + synthetase [Streptomyces clavuligerus ATCC
           27064]
          Length = 586

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALVAAIACDAVGAQNVYGVSM-----------PSKYSSEHSKDDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               +       E  F
Sbjct: 377 RRTGLHFRTVSIEPLF 392


>gi|291279007|ref|YP_003495842.1| hypothetical protein DEFDS_0604 [Deferribacter desulfuricans SSM1]
 gi|290753709|dbj|BAI80086.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 300

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 18/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  +++V +SGG DS V   L L + GY+V G+ + L     + K K             
Sbjct: 46  RKDKILVCVSGGKDSLV-LWLVLSKLGYNVTGMYINLGIDEYSEKSKTK---------VI 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  N+ + + D  E              +       C  C   VK      +     
Sbjct: 96  NFAEKNNLKYTIVDLNEL------GYPIPELSKKSRRPECSVCGT-VKRYYFNKIAYDYN 148

Query: 138 ADVLATGHYI 147
            DV+ATGH +
Sbjct: 149 FDVVATGHNL 158


>gi|170290828|ref|YP_001737644.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174908|gb|ACB07961.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 328

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+VA SGG DSS+   L K    +V  + L++ +    +  +G+      +  AR++ +
Sbjct: 49  KVMVAHSGGKDSSLALLLTKEFSDEVRELDLKVIS---VTLDEGTLYRRSSIELARKLAE 105

Query: 82  TINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + V H      +   F    +     +   G     C  C   ++   L +V R++GA 
Sbjct: 106 RLRVRHLTIQMRDILGFS---LEDLRLAIPKGWKRNACTYCG-VLRRQILNAVAREIGAT 161

Query: 140 VLATGHYI 147
           VL TGH +
Sbjct: 162 VLVTGHNL 169


>gi|229172079|ref|ZP_04299644.1| hypothetical protein bcere0006_11930 [Bacillus cereus MM3]
 gi|228611422|gb|EEK68679.1| hypothetical protein bcere0006_11930 [Bacillus cereus MM3]
          Length = 223

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+       +   +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIKQFAEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H V D  
Sbjct: 51 --AAEIAKELGIKHTVLDMS 68


>gi|52549241|gb|AAU83090.1| thiamine biosynthesis ATP pyrophosphatase [uncultured archaeon
           GZfos26E7]
          Length = 381

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
             +++  +SGG+DS V A +L R G +VI +   L        R+
Sbjct: 171 QGKMIALVSGGIDSPVAAWMLMRRGAEVIPLYFDLEEFTDPKSRE 215


>gi|84489405|ref|YP_447637.1| hypothetical protein Msp_0596 [Methanosphaera stadtmanae DSM
          3091]
 gi|84372724|gb|ABC56994.1| predicted subunit of tRNA methyltransferase [Methanosphaera
          stadtmanae DSM 3091]
          Length = 196

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+  V  SGG DSS++A +L R GYDV  +T+                       A+   
Sbjct: 1  MKAAVLYSGGKDSSLMAVILDRLGYDVELITINF-------------GIFNSSIPAQESA 47

Query: 81 DTINVSHYVFDY 92
           ++   H V + 
Sbjct: 48 KSLGFKHKVLNL 59


>gi|70732079|ref|YP_261835.1| exsB protein [Pseudomonas fluorescens Pf-5]
 gi|110816202|sp|Q4K7E8|QUEC1_PSEF5 RecName: Full=7-cyano-7-deazaguanine synthase 1; AltName:
          Full=7-cyano-7-carbaguanine synthase 1; AltName:
          Full=PreQ(0) synthase 1; AltName: Full=Queuosine
          biosynthesis protein queC 1
 gi|68346378|gb|AAY93984.1| exsB protein [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
          + +  + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + ++
Sbjct: 7  NPSSSEKRAVILLSGGLDSATVVAMARAEGYRC--YTM--------SFDYGQRHRAE-LH 55

Query: 75 DARRVCDTIN-VSHYVF 90
           A RV   +  V H V 
Sbjct: 56 AAERVARDLGVVEHKVI 72


>gi|297581167|ref|ZP_06943091.1| GMP synthase [Vibrio cholerae RC385]
 gi|297534483|gb|EFH73320.1| GMP synthase [Vibrio cholerae RC385]
          Length = 370

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 21/83 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGNRLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERF 96
                  D   ++    D EERF
Sbjct: 271 -------DKFGLNIIKVDAEERF 286


>gi|157813152|gb|ABV81321.1| putative GMP synthetase [Triops longicaudatus]
          Length = 197

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 20 DMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQL 54
            +V++ +SGGVDS+V AALL     +    VI V +  
Sbjct: 43 GKQVLMLVSGGVDSTVCAALLHKALPQQ--QVIAVHIDN 79


>gi|218130121|ref|ZP_03458925.1| hypothetical protein BACEGG_01708 [Bacteroides eggerthii DSM 20697]
 gi|217987625|gb|EEC53953.1| hypothetical protein BACEGG_01708 [Bacteroides eggerthii DSM 20697]
          Length = 377

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++ +SGGVDS+ VA L  + G   + + L   +NS  A              + + + D 
Sbjct: 70  LIGVSGGVDSTYVAYLCVKYGLRPLAIHLDNGWNSELAE------------QNIKNLVDK 117

Query: 83  INVSHYVF 90
           + +     
Sbjct: 118 LQIDFERI 125


>gi|189467530|ref|ZP_03016315.1| hypothetical protein BACINT_03920 [Bacteroides intestinalis DSM
           17393]
 gi|189435794|gb|EDV04779.1| hypothetical protein BACINT_03920 [Bacteroides intestinalis DSM
           17393]
          Length = 251

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 33/133 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAGQDV 73
           ++++ +SGG DS  +  LL R        + V+ V   ++                  D+
Sbjct: 33  KILIGLSGGKDSLALVELLARRARIFKPRFAVVAVHVVMKNI------------PYQSDL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              R   ++  +          +       F +S    ++P      NR      L +V 
Sbjct: 81  TYLRDYVESWGIPFV------LYETE----FDASTDTRKSPCFLCSWNRR---KALFTVA 127

Query: 134 RQLGADVLATGHY 146
           ++ G + +A GH+
Sbjct: 128 KEQGCNKIALGHH 140


>gi|332140738|ref|YP_004426476.1| putative regulator protein [Alteromonas macleodii str. 'Deep
          ecotype']
 gi|254764297|sp|B4RTX3|QUEC_ALTMD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|327550760|gb|AEA97478.1| putative regulator protein [Alteromonas macleodii str. 'Deep
          ecotype']
          Length = 218

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          VVV  SGG+DS  V     R G  V  +          S   G     +++  A  VC +
Sbjct: 5  VVVIYSGGMDSFTVLHKALRAGKKVHAL----------SFDYGQ-RHKKELDYAAAVCTS 53

Query: 83 INVSHYVFDYE 93
          + V H + D  
Sbjct: 54 LGVPHKIVDIS 64


>gi|170098654|ref|XP_001880546.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644984|gb|EDR09233.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 538

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 17/82 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV+ A+SGGVDS+V A L+       IG                       + +A++
Sbjct: 225 EKGRVIGAVSGGVDSTVAAKLMHEA----IG---------DRFHAIMVDNGVLRLNEAQQ 271

Query: 79  VCD----TINVSHYVFDYEERF 96
           V +     + V+  V D  + F
Sbjct: 272 VNEMLNKDLGVNLTVVDASDLF 293


>gi|32475312|ref|NP_868306.1| transcription regulator [Rhodopirellula baltica SH 1]
 gi|81658063|sp|Q7UFU6|QUEC_RHOBA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|32445853|emb|CAD78584.1| probable transcription regulator [Rhodopirellula baltica SH 1]
          Length = 250

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV +SGG+DS+   A+ +  G++V  ++ +                   +  A +   
Sbjct: 23 KAVVLLSGGLDSATCVAIARDQGFEVHAISFRYGQRHDGE-----------LDRAAKQAS 71

Query: 82 TIN-VSHYVFD 91
           +  VSH V D
Sbjct: 72 LMGVVSHRVID 82


>gi|150019326|ref|YP_001311580.1| argininosuccinate synthase [Clostridium beijerinckii NCIMB 8052]
 gi|187470627|sp|A6M1Z4|ASSY_CLOB8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|149905791|gb|ABR36624.1| Argininosuccinate synthase [Clostridium beijerinckii NCIMB 8052]
          Length = 407

 Score = 45.2 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 26/134 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+S++   LK + G +VI V           K +      + +    
Sbjct: 3   KYNKVVLAYSGGLDTSIIIPWLKENYGCEVIAVC-----GNVGQKDELDGLEEKAIKTGA 57

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     Y+ D  + F +  I P           Y  G +        R +    L+
Sbjct: 58  S-------KLYIEDLTQEFVDDYIFPTIQAGAIYEGKYLLGTSFA------RPIIGKRLV 104

Query: 131 SVTRQLGADVLATG 144
            + +  GAD +  G
Sbjct: 105 EIAKAEGADAICHG 118


>gi|302389237|ref|YP_003825058.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199865|gb|ADL07435.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 247

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 29/142 (20%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAAL--LKRDG----YDVIGVTLQLYNSRKASKRKG 65
           +D        ++ V +SGG DS+ +  +  L R      +D++ V + L          G
Sbjct: 18  IDYGMIENGDKIAVGVSGGKDSTTLLYILDLVRKHSPLDFDIVAVNIDL----------G 67

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                  + D    C  + +   V           I              PC  C+R ++
Sbjct: 68  WEMDLTPLEDF---CRNLQIPLKVV-------KTDIARVVFEIRKES--NPCSLCSR-MR 114

Query: 126 FSDLLSVTRQLGADVLATGHYI 147
              L S   +LG + +A  H+ 
Sbjct: 115 RGTLDSAAVELGCNKVALAHHA 136


>gi|291279418|ref|YP_003496253.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1]
 gi|290754120|dbj|BAI80497.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1]
          Length = 419

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-----YDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K+ +++VA SGG DS  +   L ++       D+I   +  +  R  S          D 
Sbjct: 18  KNKKLIVAFSGGKDSLSILHFLVKNKDLLSISDIIACHI-NHQIRPDSD--------DDE 68

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A+  CD +NV  Y       ++  V       Y      +   +  R +++  L  + 
Sbjct: 69  KFAKEFCDKLNVKIYT------YKIDVFDY-VKKYK-----VSIEEAARILRYKKLYDLL 116

Query: 134 RQLGADVLATGHY 146
             +  D + T H+
Sbjct: 117 NDIKYDFIVTAHH 129


>gi|239996326|ref|ZP_04716850.1| argininosuccinate synthase [Alteromonas macleodii ATCC 27126]
          Length = 146

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++V+A SGG+D+S +   LK + G +V+               +      + +      
Sbjct: 5   KKIVLAYSGGLDTSAIIPWLKENYGCEVVA----FAADVGQGDEELEGLHEKAIASGASE 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
           C       ++ D +E F +  I P           Y  G +    V     V       +
Sbjct: 61  C-------HIVDLKEEFVSEYIFPTITTGAVYEGEYLLGTSMARPVIAKAQV------EI 107

Query: 133 TRQLGADVLATG 144
            R++GAD L  G
Sbjct: 108 ARKVGADALCHG 119


>gi|160894783|ref|ZP_02075558.1| hypothetical protein CLOL250_02334 [Clostridium sp. L2-50]
 gi|156863717|gb|EDO57148.1| hypothetical protein CLOL250_02334 [Clostridium sp. L2-50]
          Length = 385

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 28/142 (19%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N+ +L K     ++ V +SGG DS ++A   +          L+L+N  +  + K    
Sbjct: 126 INTYELVKP--GDKIAVCISGGKDSMLMAKCFQE---------LKLHNKFEF-EVKFLVM 173

Query: 69  AGQDVYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                   R+V      ++N+   +      F + +     +   +     PC  C   +
Sbjct: 174 DPGYSETNRKVIEENAKSLNIPITI------FESDIFESVFTVEKS-----PCYLC-ARM 221

Query: 125 KFSDLLSVTRQLGADVLATGHY 146
           +   L    ++LG + +A GH+
Sbjct: 222 RRGHLYHFAQELGCNKIALGHH 243


>gi|119356142|ref|YP_910786.1| GMP synthase [Chlorobium phaeobacteroides DSM 266]
 gi|226738418|sp|A1BD85|GUAA_CHLPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119353491|gb|ABL64362.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium phaeobacteroides
           DSM 266]
          Length = 513

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 42/205 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++       +V+  +SGGVDS+V A L+ +  G  +  V +                   
Sbjct: 213 EIRARAGKDKVICGISGGVDSTVAAVLVSQAIGKQLHCVFVDN--------------GLL 258

Query: 72  DVYDARRVCDT---INVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              +A +V +    + +S  + D  + F    + V  P       G T +          
Sbjct: 259 RKNEAVKVMNFLKPLGLSVTLADASDLFLKRLDKVASPEKKRKIIGRTFIHV-------- 310

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F   L+  + L          I S    G     +                +    ++  
Sbjct: 311 FEQHLNEEKYL-VQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMK 357

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L  PL ++ K+ VR + RE+G+ 
Sbjct: 358 LKLIEPLRELFKDEVRAVGRELGIA 382


>gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
 gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
          Length = 332

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 53/230 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT- 82
           ++A+SGG DS V   LL              +  R++     +        +ARR  +  
Sbjct: 20  LLAVSGGPDS-VALMLLAAQ-----------WPDRRSHDIAVATVDHGLRPEARREAEQV 67

Query: 83  ------INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                 +   H+V  ++         P         T           +++ L     ++
Sbjct: 68  GAWANALGFPHHVLTWQGE------KPRTRVQERARTA----------RYALLADCAGRI 111

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPLG 193
           GA  + T H+   +            + R   +       L   T +  C    L  PL 
Sbjct: 112 GAGAIVTAHHADDQAE-----TILFRLTRGSGVA-----GLAGMTAESRCGGVALLRPLL 161

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243
            ++K ++ ++ R    D      +     + +      ++++   +A +G
Sbjct: 162 GLRKAALEEICRRCDHDYFRDPSN-----IDEHYARARLRKLRPLLAAQG 206


>gi|311109446|ref|YP_003982299.1| LPS biosynthesis protein WbpG [Achromobacter xylosoxidans A8]
 gi|310764135|gb|ADP19584.1| LPS biosynthesis protein WbpG [Achromobacter xylosoxidans A8]
          Length = 381

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++              Q V +  ++ D +
Sbjct: 73  IIGLSGGLDSSYTAYIAKEK----MGLRPLLFHVDAGWNTD------QAVGNVEKLVDGL 122

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE      +     ++   + P   +  +    FS L     +     +
Sbjct: 123 GLELYTEVINWEE------MKDLQVAFLKAQIPDQDLPQDVAF-FSGLYKFANKHKLKYV 175

Query: 142 ATGHYIRSRLYVGDDGKRRRI 162
            TG    +      +      
Sbjct: 176 LTGGNYSTECCREPEEWGGYP 196


>gi|300866059|ref|ZP_07110789.1| 7-cyano-7-deazaguanine synthase [Oscillatoria sp. PCC 6506]
 gi|300335920|emb|CBN55947.1| 7-cyano-7-deazaguanine synthase [Oscillatoria sp. PCC 6506]
          Length = 231

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ VV +SGG+DSS V    + DG +         +   +   +      +++  A+ + 
Sbjct: 1   MKAVVLLSGGLDSSTVLYQAQADGCE---------SYTISFDYQQR--HLRELESAKAIA 49

Query: 81  DTIN-VSHYVFDYEERFR------NAVIVPFASSYAAGET---PLPCVDCNRTVKFSDLL 130
            +   V H V  ++          +  I        A  +   P+  V    T+  S  L
Sbjct: 50  LSAGVVKHQVVSFDLSLWGGSALTDNKIDFPRDRTLAQMSESIPITYVPARNTIFLSFAL 109

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--- 187
           +    L AD +  G          D        CRP  ++  Q  F   T Q +  +   
Sbjct: 110 AWAETLNADRIYIGVNALDYSGYPD--------CRPDYIQAMQEVFRLGTKQGREGNPIS 161

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADK 214
           +  PL D+KK  +  L   +G+     
Sbjct: 162 ILTPLIDLKKTEIIKLGNHLGVPWEKT 188


>gi|291549866|emb|CBL26128.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus torques L2-14]
          Length = 238

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 28/139 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           D +      R+ V +SGG DS        LL+             +  ++      +C  
Sbjct: 16  DYNMIEDGDRIAVGVSGGKDSLTLLYAMKLLQE------------FYPKRFELSAITCNV 63

Query: 70  GQDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           G +  D   V   C  + + +   +        V           +   PC  C +  K 
Sbjct: 64  GFEGMDFTGVADFCKHLEIPYEQVN--TEIARIVF-------QENKDTRPCSLCAKLRK- 113

Query: 127 SDLLSVTRQLGADVLATGH 145
             +     +LG + +A  H
Sbjct: 114 GAMYQRLGELGINKMAYAH 132


>gi|227873318|ref|ZP_03991580.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268]
 gi|227840833|gb|EEJ51201.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268]
          Length = 342

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 26/202 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDA---R 77
           +++A+SGG DS  +   LK          LQ +   S +A   +      + V DA   R
Sbjct: 25  ILLALSGGADSMYLLYFLKE---------LQNHLSFSLRAMHVQHGIRGDEAVEDATFSR 75

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +  +   V          +  +V         A E  L   +  RT+++  L     +  
Sbjct: 76  QQAELYQVPFL------EYTCSVPDY------AEENKLGIEEAARTLRYKALKEEALRWQ 123

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+         +             + R                 +    L  PL  ++K
Sbjct: 124 AESGRKTKIALAHHMDDQAETILFHLIRGAGFSGISGMKAEDLLSEAETTLLRPLLSLRK 183

Query: 198 ESVRDLAREMGLDIADKSDSQD 219
           E +     E+G+   + S ++D
Sbjct: 184 EEILKRLEELGIPYREDSTNRD 205


>gi|225378572|ref|ZP_03755793.1| hypothetical protein ROSEINA2194_04240 [Roseburia inulinivorans DSM
           16841]
 gi|225209586|gb|EEG91940.1| hypothetical protein ROSEINA2194_04240 [Roseburia inulinivorans DSM
           16841]
          Length = 410

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK   GY+VI                  C   +++     
Sbjct: 4   KVILAYSGGLD--TTAIIPWLKETYGYEVICC-------------CVDCGQEEELNGLDE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQL 136
                     Y+ D  + F +  IVP   + A  E                 L+ + R+ 
Sbjct: 49  RAKLSGASKLYIEDIVDEFCDDYIVPCVQANAVYENKYLLGTSMARPGIAKKLVEIARKE 108

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 109 GATAICHG 116


>gi|254188748|ref|ZP_04895259.1| Asparagine synthase family [Burkholderia pseudomallei Pasteur
           52237]
 gi|254262115|ref|ZP_04953169.1| asparagine synthase family protein [Burkholderia pseudomallei
           1710a]
 gi|157936427|gb|EDO92097.1| Asparagine synthase family [Burkholderia pseudomallei Pasteur
           52237]
 gi|254220804|gb|EET10188.1| asparagine synthase family protein [Burkholderia pseudomallei
           1710a]
          Length = 533

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 176 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 225

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 226 ADSIGARLICIDIDRHLPFSERIV 249


>gi|157736921|ref|YP_001489604.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
 gi|157698775|gb|ABV66935.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
          Length = 390

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 13  DLDKNPKDMRV--VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCA 69
            + K+ K+ +   ++ +SGG DSS +  L K+ G   + V     +NS  A++       
Sbjct: 62  QIKKDGKNKKYDCIIGVSGGTDSSYMLYLAKQWGLRPLAVHYDNTWNSAIATEN------ 115

Query: 70  GQDVYDARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                  R+V   +++    +V D +E   + +   F  +  A       +         
Sbjct: 116 ------IRKVLTALDIDLYTHVTDNKEA--DDIFRSFFYADVAEIEASTDLALAE----- 162

Query: 128 DLLSVTRQLGADVLATGHY 146
            +     +     +  GH 
Sbjct: 163 VMYRAAWKYKVKYVLEGHS 181


>gi|53719409|ref|YP_108395.1| hypothetical protein BPSL1796 [Burkholderia pseudomallei K96243]
 gi|126452006|ref|YP_001066180.1| asparagine synthase [Burkholderia pseudomallei 1106a]
 gi|226196366|ref|ZP_03791948.1| asparagine synthase family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812196|ref|YP_002896647.1| asparagine synthase family protein [Burkholderia pseudomallei
           MSHR346]
 gi|242316888|ref|ZP_04815904.1| asparagine synthase family protein [Burkholderia pseudomallei
           1106b]
 gi|52209823|emb|CAH35795.1| hypothetical protein BPSL1796 [Burkholderia pseudomallei K96243]
 gi|126225648|gb|ABN89188.1| asparagine synthase family protein [Burkholderia pseudomallei
           1106a]
 gi|225931583|gb|EEH27588.1| asparagine synthase family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505050|gb|ACQ97368.1| asparagine synthase family protein [Burkholderia pseudomallei
           MSHR346]
 gi|242140127|gb|EES26529.1| asparagine synthase family protein [Burkholderia pseudomallei
           1106b]
          Length = 533

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 176 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 225

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 226 ADSIGARLICIDIDRHLPFSERIV 249


>gi|167919012|ref|ZP_02506103.1| Asparagine synthase family protein [Burkholderia pseudomallei
           BCC215]
          Length = 580

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 223 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 272

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 273 ADSIGARLICIDIDRHLPFSERIV 296


>gi|217421564|ref|ZP_03453068.1| asparagine synthase family protein [Burkholderia pseudomallei 576]
 gi|217395306|gb|EEC35324.1| asparagine synthase family protein [Burkholderia pseudomallei 576]
          Length = 533

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 176 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 225

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 226 ADSIGARLICIDIDRHLPFSERIV 249


>gi|254179851|ref|ZP_04886450.1| Asparagine synthase family [Burkholderia pseudomallei 1655]
 gi|184210391|gb|EDU07434.1| Asparagine synthase family [Burkholderia pseudomallei 1655]
          Length = 533

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 176 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 225

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 226 ADSIGARLICIDIDRHLPFSERIV 249


>gi|254198335|ref|ZP_04904757.1| Asparagine synthase family [Burkholderia pseudomallei S13]
 gi|254297688|ref|ZP_04965141.1| Asparagine synthase family [Burkholderia pseudomallei 406e]
 gi|157807833|gb|EDO85003.1| Asparagine synthase family [Burkholderia pseudomallei 406e]
 gi|169655076|gb|EDS87769.1| Asparagine synthase family [Burkholderia pseudomallei S13]
          Length = 533

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 176 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 225

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 226 ADSIGARLICIDIDRHLPFSERIV 249


>gi|187478133|ref|YP_786157.1| NAD synthetase [Bordetella avium 197N]
 gi|115422719|emb|CAJ49246.1| glutamine-dependent NAD synthetase [Bordetella avium 197N]
          Length = 542

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +SGG+DS+VV A+     G D V  V +                A   + DAR +  
Sbjct: 287 IIGLSGGIDSAVVLAIAVDAVGADNVRAVMM-----------PSRYTADISLTDARDMAQ 335

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
            + V         R+   VI P   ++     P
Sbjct: 336 RLGV---------RYDEIVIGPIVDAFETALAP 359


>gi|76810481|ref|YP_333461.1| asparagine synthase [Burkholderia pseudomallei 1710b]
 gi|76579934|gb|ABA49409.1| Asparagine synthase family [Burkholderia pseudomallei 1710b]
          Length = 580

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 223 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 272

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 273 ADSIGARLICIDIDRHLPFSERIV 296


>gi|319760646|ref|YP_004124584.1| GMP synthase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039360|gb|ADV33910.1| GMP synthase [Candidatus Blochmannia vafer str. BVAF]
          Length = 529

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RVV+A SGG+DS V A LLK   G + + V +         + +      +       VC
Sbjct: 228 RVVLAFSGGIDSCVTALLLKYAIGNNFVCVFVNN-GLLCYDEIEKLSSFKKKYQYLNIVC 286

Query: 81  -----DTINVSHYVFDYEERFRNAVIVP-FASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                  ++    V D     +  V+   F   +            N  +K+  L+  T 
Sbjct: 287 LSEEKRFLSALVGVVD--PEEKRKVVGRVFIEIFETYI--NSDKVKN--IKW--LVQGT- 337

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            + +DV+ +G          +  K                  +          L  P+  
Sbjct: 338 -VCSDVIESGISAVYNNSTPNVIKSHHN--------------VGGLPDYLNIKLLEPIKT 382

Query: 195 MKKESVRDLAREMGLD 210
           + K+ VR +   +GL 
Sbjct: 383 LFKDEVRKIGLRLGLP 398


>gi|315608203|ref|ZP_07883195.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574]
 gi|315250172|gb|EFU30169.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574]
          Length = 467

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 24 VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          +VA+SGG DS V   L LK  GY V           + SKR    C          +C +
Sbjct: 24 IVALSGGADS-VALLLILKELGYSVEAAHCNFNLRGEESKRDEDFCV--------SLCAS 74

Query: 83 INVSHYVFDY 92
            +  +   +
Sbjct: 75 RGIKLHRAHF 84


>gi|257468245|ref|ZP_05632341.1| argininosuccinate synthase [Fusobacterium ulcerans ATCC 49185]
 gi|317062526|ref|ZP_07927011.1| argininosuccinate synthase [Fusobacterium ulcerans ATCC 49185]
 gi|313688202|gb|EFS25037.1| argininosuccinate synthase [Fusobacterium ulcerans ATCC 49185]
          Length = 399

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +  +DVI V                     D     +  
Sbjct: 4   KVVLAYSGGLDTSVIIPWLKENYDFDVIAV-------------AVDVGQKDDFAAVEKKA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
             I     Y  D +E   N  I+P   S A  E T L      R V    L+ + +Q GA
Sbjct: 51  LQIGASKFYAADKKEELVNDFIIPMLKSGAKYEGTYLLGTSIARPVIAKALVEIAQQEGA 110

Query: 139 DVLATG 144
             +  G
Sbjct: 111 SYIVHG 116


>gi|253583644|ref|ZP_04860842.1| argininosuccinate synthase [Fusobacterium varium ATCC 27725]
 gi|251834216|gb|EES62779.1| argininosuccinate synthase [Fusobacterium varium ATCC 27725]
          Length = 399

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +  +DVI V                     D     +  
Sbjct: 4   KVVLAYSGGLDTSVIIPWLKENYNFDVIAV-------------AVDVGQKDDFAAVEKKA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138
             I     Y  D +E   N  I+P   S A  E T L      R V    L+ + ++ GA
Sbjct: 51  LQIGASKFYAADKKEELVNDFIIPMLKSGAKYEGTYLLGTSIARPVIAKALVEIAQKEGA 110

Query: 139 DVLATG 144
             +  G
Sbjct: 111 AYIVHG 116


>gi|182677746|ref|YP_001831892.1| NAD synthetase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633629|gb|ACB94403.1| NAD+ synthetase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 557

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++ AAL     G + V  V L                + + + DA+   
Sbjct: 293 VVLGLSGGVDSALCAALAVDALGREKVHAVML-----------PYRYTSQESLIDAKACA 341

Query: 81  DTINVSHYVF 90
             + + + + 
Sbjct: 342 TALGLRYDIV 351


>gi|167824234|ref|ZP_02455705.1| Asparagine synthase family protein [Burkholderia pseudomallei 9]
          Length = 513

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 156 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 205

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 206 ADSIGARLICIDIDRHLPFSERIV 229


>gi|82617281|emb|CAI64186.1| probable thiamine biosynthesis protein [uncultured archaeon]
          Length = 404

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
             +++  +SGG+DS V A +L R G +VI +   L        R+
Sbjct: 194 QGKMIALVSGGIDSPVAAWMLMRRGAEVIPLYFDLEEFTDPKSRE 238


>gi|28572257|ref|NP_789037.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Tropheryma whipplei TW08/27]
 gi|44887995|sp|Q83ID3|GUAA_TROW8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28410388|emb|CAD66774.1| GMP synthase [glutamine-hydrolyzing] [Tropheryma whipplei TW08/27]
          Length = 503

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 25/190 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+ A+SGGVDS V A L  R     IG      +  +            +       C
Sbjct: 210 KRVLCALSGGVDSVVAATLTHRA----IG------DRLRCVFVDHGLLRLNEREQVEEYC 259

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ ++   +D  + F +A      S     E     +       FS L          +
Sbjct: 260 SSLGLNVSTYDASDCFLSA-----LSGIRDSEQKRKVIGREFIACFSKLQERFDIKPHFL 314

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L    Y          G         +    D   F          +L  PL  + K+ V
Sbjct: 315 LQGTLYPDLVESGATPGGATIKSHHNVGGLSDNLGF----------ELLEPLKYLFKDEV 364

Query: 201 RDLAREMGLD 210
           R +  ++G+ 
Sbjct: 365 RKIGLQLGIP 374


>gi|28493046|ref|NP_787207.1| GMP synthase [Tropheryma whipplei str. Twist]
 gi|44887994|sp|Q83GZ6|GUAA_TROWT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28476086|gb|AAO44176.1| GMP synthase [Tropheryma whipplei str. Twist]
          Length = 503

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 25/190 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV+ A+SGGVDS V A L  R     IG      +  +            +       C
Sbjct: 210 KRVLCALSGGVDSVVAATLTHRA----IG------DRLRCVFVDHGLLRLNEREQVEEYC 259

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ ++   +D  + F +A      S     E     +       FS L          +
Sbjct: 260 SSLGLNVSTYDASDCFLSA-----LSGIRDSEQKRKVIGREFIACFSKLQERFDIKPHFL 314

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L    Y          G         +    D   F          +L  PL  + K+ V
Sbjct: 315 LQGTLYPDLVESGATPGGATIKSHHNVGGLSDNLGF----------ELLEPLKYLFKDEV 364

Query: 201 RDLAREMGLD 210
           R +  ++G+ 
Sbjct: 365 RKIGLQLGIP 374


>gi|297588575|ref|ZP_06947218.1| NAD(+) synthase [Finegoldia magna ATCC 53516]
 gi|297573948|gb|EFH92669.1| NAD(+) synthase [Finegoldia magna ATCC 53516]
          Length = 241

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 43/181 (23%)

Query: 26  AMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
            +SGG+DS+V+A L K+  G + +G+ +                  +D  DAR + + I+
Sbjct: 29  GISGGIDSAVLACLCKKAFGDNALGLIM------------PIKSNPKDEEDARILAEAID 76

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           ++    D    F +A+I  F       +T +     N   +              ++   
Sbjct: 77  LNCKKVDLNGGF-DALIQTF------EKTSVEMAASNIKPRLR------------MITLY 117

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204
           +Y ++  Y+   G  R         +   S                PL ++ K  + ++A
Sbjct: 118 YYAQNNGYMVLSGSNRSEFMTGYFTKYGDSGAD-----------LMPLLNLYKTDIFEMA 166

Query: 205 R 205
           +
Sbjct: 167 K 167


>gi|45191038|ref|NP_985292.1| AER437Cp [Ashbya gossypii ATCC 10895]
 gi|74693248|sp|Q755T1|CTU1_ASHGO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|44984106|gb|AAS53116.1| AER437Cp [Ashbya gossypii ATCC 10895]
          Length = 373

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  RV V  SGG DS+V+A +LK   + +D  G+ + L +  +             +   
Sbjct: 64  RGERVAVGASGGKDSTVLAYILKLLNERHD-YGLEIVLLSIDEG----IVGYRDDSLATV 118

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R  +   +   +  Y++ +             A       C  C    +   L      
Sbjct: 119 KRNQEQYGLPLKIVSYKDLY-----DWTMDEIVACAGMRNSCTYCGVFRR-QALDRGAAM 172

Query: 136 LGADVLATGHYI 147
           L    + TGH  
Sbjct: 173 LDIHHVVTGHNA 184


>gi|42523552|ref|NP_968932.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bdellovibrio bacteriovorus HD100]
 gi|50400325|sp|Q6MLD2|GUAA_BDEBA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|39575758|emb|CAE79925.1| GMP synthase [Bdellovibrio bacteriovorus HD100]
          Length = 506

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 34/194 (17%)

Query: 22  RVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            V+V +SGGVDS+VVA LL K  G + V  V +                   +       
Sbjct: 211 HVLVGLSGGVDSTVVATLLTKALGAERVHCVFVDN-----------GLLRKNEYEAVLES 259

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQL 136
              I ++    D  E F +A+             G   +   D +   K         + 
Sbjct: 260 YHRIGLNVRGVDASEEFLSALQGKSDPEDKRKTIGRVFIEVFDKSYDHKLPI------KW 313

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            A        I S   VG     +                +    ++    L  P+ ++ 
Sbjct: 314 LAQGTLYPDVIESVSSVGGSVTIKSHHN------------VGGLPEKMKLGLVEPVRELF 361

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  ++GL 
Sbjct: 362 KDEVRALGAQLGLP 375


>gi|261417135|ref|YP_003250818.1| NAD+ synthetase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373591|gb|ACX76336.1| NAD+ synthetase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 491

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+V+  SGG+DS+V AAL        IG   V L    +R  S    +         AR 
Sbjct: 204 RMVIGASGGIDSAVSAALYAEA----IGPENVYLVNMPTRFNSDTTKNA--------ARD 251

Query: 79  VCDTINVSHYVFDYEE 94
           + + +   + V    +
Sbjct: 252 LAENLGTPYMVAPISD 267


>gi|94495451|ref|ZP_01302031.1| ExsB [Sphingomonas sp. SKA58]
 gi|94424839|gb|EAT09860.1| ExsB [Sphingomonas sp. SKA58]
          Length = 233

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS V  AL +  GY +  +      S   ++R        ++  A RV   +
Sbjct: 10 VVLLSGGLDSMVAGALAREAGYRLFAL------SIDYNQR-----HRVELRAAARVAQAL 58

Query: 84 N-VSHYVF 90
          N + H V 
Sbjct: 59 NAIRHIVL 66


>gi|52548696|gb|AAU82545.1| thiamine biosynthesis ATP pyrophosphatase [uncultured archaeon
           GZfos18C8]
          Length = 381

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
             +++  +SGG+DS V A +L R G +VI +   L        R+
Sbjct: 171 QGKMIALVSGGIDSPVAAWMLMRRGAEVIPLYFDLEEFTDPKSRE 215


>gi|154245956|ref|YP_001416914.1| argininosuccinate synthase [Xanthobacter autotrophicus Py2]
 gi|229889902|sp|A7IGW4|ASSY_XANP2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|154160041|gb|ABS67257.1| Argininosuccinate synthase [Xanthobacter autotrophicus Py2]
          Length = 409

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV   +LK          LQ     +          G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSV---ILK---------WLQTTYKCEVITFTADLGQGEELEPARKKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P   +       Y  G +    +   + +      
Sbjct: 54  QLLGIKDENIFIEDVREEFVAEYVFPMFRANAVYEGLYLLGTSIARPLIAKKQI------ 107

Query: 131 SVTRQLGADVLATG 144
            + R++GAD ++ G
Sbjct: 108 EIARKMGADAVSHG 121


>gi|159904365|ref|YP_001551709.1| PP-loop superfamily ATPase [Prochlorococcus marinus str. MIT 9211]
 gi|159889541|gb|ABX09755.1| Predicted PP-loop superfamily ATPase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 229

 Score = 45.2 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 40/213 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +  N K + +   +SGG+DS+   A+    G++VIG++   ++  +  KR+        +
Sbjct: 1   MLANNKPISIA-LLSGGLDSATATAMALEAGHNVIGIS---FDYGQRHKRE--------L 48

Query: 74  YDARRVCDTIN-VSHYV--FDYEE-------RFRNAVIVPFASSYAAGETPLPCVDCNRT 123
             A  +   +N + H +   +  +         + +V          G+ P   V    T
Sbjct: 49  EAAIELAAHLNLLGHEIINVNLAKWGGSSLTDLQQSVPT---QGIIKGKIPNTYVPGRNT 105

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           V  +  LS+    GA+ +  G          D        CRP  L+  Q+  L     +
Sbjct: 106 VFIAIGLSLAEAKGANQIVLGINAMDYSGYPD--------CRPDYLKSFQA--LANLASK 155

Query: 184 Q-----LCDLRFPLGDMKKESVRDLAREMGLDI 211
                    L  PL  + K  +   A  + + I
Sbjct: 156 AGREGNAPKLWAPLIHLNKVEIIQEALRLNIPI 188


>gi|302325452|gb|ADL24653.1| NAD+ synthetase, glutamine-dependent [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 518

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+V+  SGG+DS+V AAL        IG   V L    +R  S    +         AR 
Sbjct: 231 RMVIGASGGIDSAVSAALYAEA----IGPENVYLVNMPTRFNSDTTKNA--------ARD 278

Query: 79  VCDTINVSHYVFDYEE 94
           + + +   + V    +
Sbjct: 279 LAENLGTPYMVAPISD 294


>gi|262305997|gb|ACY45591.1| gln amidotransferase [Acanthocyclops vernalis]
          Length = 197

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D +V++ +SGGVDS+V AAL+ R  G D V+ + +          RKG     +D     
Sbjct: 43  DNKVLMLLSGGVDSTVCAALMNRALGVDRVLAIHIDN-----GFMRKGESDQVRDSL--- 94

Query: 78  RVCDTINVSHYVFDYEERF 96
                + +   V      F
Sbjct: 95  ---ARLGLDVKVIRASHEF 110


>gi|150402995|ref|YP_001330289.1| argininosuccinate synthase [Methanococcus maripaludis C7]
 gi|150034025|gb|ABR66138.1| Argininosuccinate synthase [Methanococcus maripaludis C7]
          Length = 397

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y VI V                    +D+ +    
Sbjct: 4   KIAVLAYSGGLDTSCCLKLLEDKYDYKVISV------------AVDVGQPEEDLIEPEEK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
                V  HY  D +E F    I     + A  E  PL        +       +  ++G
Sbjct: 52  AKKFGVLKHYTIDAKEEFATEYIFRAIKANALYEGYPLSTALARPLIAIKI-AELAEEVG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  ++ G         G+D  R   + R    E +    +       L            
Sbjct: 111 ASAISHG-----CTGKGNDQFRFESVMRAKTPEIE---IVAPIRDLNLTRT--------- 153

Query: 198 ESVRDLAREMGLDIADKSD 216
           E + + A+E G+ +    +
Sbjct: 154 EEI-EYAKEKGIPVPVNLE 171


>gi|302036488|ref|YP_003796810.1| putative thiamine biosynthesis protein ThiI [Candidatus Nitrospira
           defluvii]
 gi|300604552|emb|CBK40884.1| putative Thiamine biosynthesis protein ThiI [Candidatus Nitrospira
           defluvii]
          Length = 392

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 35/205 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V   +SGG+DS V A  + + G   + V    ++ R    R       + V        
Sbjct: 180 KVACLISGGIDSPVAAYRMMKRGCKAVFVH---FSGRPLVSRDSEEKVQELVQ--LLTAY 234

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   Y+  + E  +  ++    +++         V   R +       + R+ G   L
Sbjct: 235 QYHSQLYIVPFGEI-QREIVANAPAAFR--------VVLYRRIMVRIAEELARRHGCWAL 285

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
            TG  +        +                    L          L  PL  M K  + 
Sbjct: 286 VTGDSLGQVASQTPEN-------------------LSVVEAAAELPLLRPLIGMDKIEIT 326

Query: 202 DLAREMGLDIADKSDSQDIC--FVQ 224
           + A+++G         QD C  FV 
Sbjct: 327 EQAQQIGSFTTSIEPDQDCCKLFVP 351


>gi|302035864|ref|YP_003796186.1| argininosuccinate synthase [Candidatus Nitrospira defluvii]
 gi|300603928|emb|CBK40260.1| Argininosuccinate synthase [Candidatus Nitrospira defluvii]
          Length = 405

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 57/210 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L+   G +VI                     G+D+   ++ 
Sbjct: 7   KKVVLAYSGGLDTSVILKWLEEVYGCEVIAF-------------CADLGQGEDLKAIKKK 53

Query: 80  CDTINV-SHYVFDYEERF-RNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             ++ V   YV D  E F ++ V  P          SY  G +    +   R +      
Sbjct: 54  AQSLGVKKVYVEDLREVFVKDHVF-PMLRGNAIYEGSYLLGTSIARPLIARRQI------ 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF--LFATTQQQLCDL 188
            +    GA+ +  G                           DQ  F   +     Q+  +
Sbjct: 107 EIAADEGAEAVCHG---------------------ATGKGNDQVRFELTYMALHPQI-KI 144

Query: 189 RFPLGDMK---KESVRDLAREMGLDIADKS 215
             P  +     +  + + A + G+ +    
Sbjct: 145 IAPWREWTMRSRRELIEYAEKHGIPVTATK 174


>gi|289578688|ref|YP_003477315.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter italicus Ab9]
 gi|289528401|gb|ADD02753.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter italicus Ab9]
          Length = 380

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 49/197 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V   ++ + G ++  V          S    S  A   V D  +V
Sbjct: 172 NGKATVLLSGGIDSPVATWMMMKRGVEIEAVYFH-------SPPYTSERAKDKVVDLCKV 224

Query: 80  CDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SV 132
                  +  +V  + +             Y        C     T+    ++      +
Sbjct: 225 LSQYGQKIKLHVVHFTDL--------QLEIYEK------CPPKFTTIIMRRMMMKIAEKI 270

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
            +Q G+  L TG  +                         Q+      T   +    F P
Sbjct: 271 AQQNGSMALITGESLGQVAS--------------------QTIESLYVTNASVSIPIFRP 310

Query: 192 LGDMKKESVRDLAREMG 208
           L  M K  + DLA+++G
Sbjct: 311 LIGMDKTEIIDLAQKIG 327


>gi|302879777|ref|YP_003848341.1| exsB protein [Gallionella capsiferriformans ES-2]
 gi|302582566|gb|ADL56577.1| exsB protein [Gallionella capsiferriformans ES-2]
          Length = 225

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+ V A+ +  GY    +      S    +R        ++  A+RV +T+
Sbjct: 5  VVLLSGGLDSATVLAMARAQGYTCYAL------SVDYGQR-----HHSELAAAQRVAETL 53

Query: 84 NV-SHYVFD 91
              H V +
Sbjct: 54 GAREHRVVN 62


>gi|238927338|ref|ZP_04659098.1| possible NAD(+) synthase (glutamine-hydrolyzing) [Selenomonas
           flueggei ATCC 43531]
 gi|238884620|gb|EEQ48258.1| possible NAD(+) synthase (glutamine-hydrolyzing) [Selenomonas
           flueggei ATCC 43531]
          Length = 555

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 15/76 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RVV+ +SGG+DS+V AAL      D IG   V L    SR  S              A +
Sbjct: 245 RVVIGISGGIDSAVAAALYV----DAIGAENVLLVNMPSRFNSATTKGL--------AAQ 292

Query: 79  VCDTINVSHYVFDYEE 94
           + D +   H +   EE
Sbjct: 293 LADNLGSRHMIVPIEE 308


>gi|167815861|ref|ZP_02447541.1| Asparagine synthase family protein [Burkholderia pseudomallei 91]
          Length = 547

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV
Sbjct: 144 VCAALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARV 193

Query: 80  CDTINVSHYVFDY--EERFRNAVI 101
            D+I       D      F   ++
Sbjct: 194 ADSIGARLICIDIDRHLPFSERIV 217


>gi|313896137|ref|ZP_07829691.1| NAD+ synthase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975562|gb|EFR41023.1| NAD+ synthase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 554

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 15/76 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RVVV +SGG+DS+V AAL      D IG   V L    SR  S+             A R
Sbjct: 244 RVVVGISGGIDSAVSAALYV----DAIGADRVLLVNMPSRFNSETTKGL--------AAR 291

Query: 79  VCDTINVSHYVFDYEE 94
           + + +     +   EE
Sbjct: 292 LAENLGCRSMIVPIEE 307


>gi|42523537|ref|NP_968917.1| hypothetical protein Bd2064 [Bdellovibrio bacteriovorus HD100]
 gi|81617210|sp|Q6MLE7|TTCA_BDEBA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|39575743|emb|CAE79910.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 259

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 30/202 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +      +V+V +SGG DSSV+ ALL           +Q  + RK           Q 
Sbjct: 25  DFNMIEDGDKVMVCVSGGKDSSVLLALLTE---------IQRRSERKFQIEAAILDQKQP 75

Query: 73  VYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +D  +     +++ V  ++ + ++ +              G T   C  C+R ++ + L
Sbjct: 76  GFDVSKFKVWVESLGVPFHIVE-KDTYS------IVKEKVQGGTF--CSLCSR-LRRAIL 125

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
                  G   LA GH+    ++              M  +          +  +   L 
Sbjct: 126 YDFAHANGFTKLALGHHRDDVVHTALLNMFYVGTTAAMPPK--------LKSDDERNILV 177

Query: 190 FPLGDMKKESVRDLAREMGLDI 211
            PL  + +  + +LA E    +
Sbjct: 178 RPLCYVSERDIEELAAEWAFPV 199


>gi|85715402|ref|ZP_01046384.1| NAD(+) synthase [Nitrobacter sp. Nb-311A]
 gi|85697823|gb|EAQ35698.1| NAD(+) synthase [Nitrobacter sp. Nb-311A]
          Length = 583

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G + V GV L                A   + DA R+ 
Sbjct: 294 VLLGVSGGIDSALCAAIAVDALGAERVRGVML-----------PSRFTAQVSLDDAARLA 342

Query: 81  DTINVSHYVF 90
             + + + V 
Sbjct: 343 TALGIRYEVL 352


>gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
 gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
          Length = 482

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 40/198 (20%)

Query: 22  RVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+VVA+SGG DS V    +L      VI + LQL  +      +      +   +   + 
Sbjct: 28  RIVVAVSGGPDS-VALLHILHE--ISVIHMPLQLVCAHVHHGFRPEESDAEA-EEVHNIA 83

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +   +          V  P      +G+ P       R +++S L     +  A  
Sbjct: 84  RKLKLPFEMI--------RVDAPAYMK-ESGKGPQEAA---RELRYSFLHDTATKWKAQH 131

Query: 141 LATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCD------LRFPL 192
           +A  H+       GDD        + R                  +L        L  PL
Sbjct: 132 IAMAHH-------GDDQAETVLLHLLRGSGP--------AGLAGMRLARNEKNVQLIRPL 176

Query: 193 GDMKKESVRDLAREMGLD 210
             M K  + +     G  
Sbjct: 177 LRMYKADLIEYCNFHGFS 194


>gi|297624482|ref|YP_003705916.1| GMP synthase large subunit [Truepera radiovictrix DSM 17093]
 gi|297165662|gb|ADI15373.1| GMP synthase, large subunit [Truepera radiovictrix DSM 17093]
          Length = 525

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D RV++A+SGGVDSS +  LL R  G  +  V                     +  +  R
Sbjct: 226 DERVLLAISGGVDSSTLGLLLNRAIGERLTAVF-----------VDHGLLRAGEAEEVER 274

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + V+  V D  ERF                T +   +  R +   + + V   +  
Sbjct: 275 ALRGVGVNLTVVDAAERF------------LGALTGVADPEEKRKIIGREFIEVFNGVVR 322

Query: 139 DVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           D  A   +IR           +   G       +           +    +    +L  P
Sbjct: 323 DKQAEVGHIRFLAQGTLYPDVIESSGGHGAANIKSHHN-------VGGLPEDLRFELLEP 375

Query: 192 LGDMKKESVRDLAREMGLD 210
              + K+ VR+LA  +GL 
Sbjct: 376 FRTLFKDEVRELATLLGLP 394


>gi|302667536|ref|XP_003025350.1| hypothetical protein TRV_00473 [Trichophyton verrucosum HKI 0517]
 gi|291189457|gb|EFE44739.1| hypothetical protein TRV_00473 [Trichophyton verrucosum HKI 0517]
          Length = 80

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +  +V++A SGG+D+S + A L   G++V+                      +D  +A R
Sbjct: 3  QKEKVLLAYSGGLDTSCILAWLLEQGHEVVCF-------------LADVGQAEDFKEAER 49

Query: 79 VCDTINV-SHYVFDYEERFRNA 99
              +      V D ++ F   
Sbjct: 50 KALAVGAKKLVVEDLKKEFVED 71


>gi|56460022|ref|YP_155303.1| PP-loop superfamily ATPase [Idiomarina loihiensis L2TR]
 gi|81362360|sp|Q5QUZ6|QUEC_IDILO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|56179032|gb|AAV81754.1| Predicted PP-loop superfamily ATPase [Idiomarina loihiensis L2TR]
          Length = 218

 Score = 45.2 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VVV  SGG+DS  V      +G +V+ ++   Y  R            +++  A  VC
Sbjct: 3  QKVVVIYSGGMDSFTVLHRALAEGNEVLALSF-NYGQR----------HVKELEVAGNVC 51

Query: 81 DTINVSHYVFD 91
              + H V D
Sbjct: 52 KQHGIPHKVVD 62


>gi|327274550|ref|XP_003222040.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like
           [Anolis carolinensis]
          Length = 561

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 19/97 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA----- 76
           R+   +SGG+DSS+VAA+L +         ++     + +           + DA     
Sbjct: 252 RIGCLLSGGLDSSLVAAMLIKL--------MK-----EQNISYPLQTFAIGMEDAPDLLA 298

Query: 77  -RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
            R+V   I   H+   +       V+     S    +
Sbjct: 299 SRKVAAHIGSQHHEVIFNSEEGIQVLEDVIFSLETYD 335


>gi|325288630|ref|YP_004264811.1| argininosuccinate synthase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964031|gb|ADY54810.1| argininosuccinate synthase [Syntrophobotulus glycolicus DSM 8271]
          Length = 402

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   LK + GY+VI   +                 G+++   R   
Sbjct: 3   KVVLAYSGGLDTSIIIPWLKENYGYEVIA--MA-----------ADLGQGEELEPLREKA 49

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  E F    I P           Y  G +    +   R      L+ +
Sbjct: 50  MKTGASKIYIEDLREEFLTEFIYPTIKAGAKYEGKYLLGTSFARPLIAKR------LVEI 103

Query: 133 TRQLGADVLATG 144
             Q GA  +A G
Sbjct: 104 AAQEGAVAIAHG 115


>gi|15922208|ref|NP_377877.1| hypothetical protein ST1892 [Sulfolobus tokodaii str. 7]
 gi|74573451|sp|Q96ZD9|QUEC1_SULTO RecName: Full=7-cyano-7-deazaguanine synthase 1; AltName:
           Full=7-cyano-7-carbaguanine synthase 1; AltName:
           Full=Archaeosine biosynthesis protein queC 1; AltName:
           Full=PreQ(0) synthase 1
 gi|15622997|dbj|BAB66986.1| 202aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 202

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ ++ MSGG+DSS  A    R G D   + +            G   A   +  ++ +C
Sbjct: 1   MKALLLMSGGLDSSSAAYYYTRRGLDFDCLFI----------NYGQRSARMQLRSSKIIC 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           + +N    V D  +  R   I            P   +     V     ++  ++ G + 
Sbjct: 51  EKLNKKLLVADIRKI-RELFISDIWLK------PHEPITHRNLVIIPIAIAFAKEKGYEE 103

Query: 141 L 141
           +
Sbjct: 104 I 104


>gi|87123364|ref|ZP_01079215.1| Argininosuccinate synthase [Synechococcus sp. RS9917]
 gi|86169084|gb|EAQ70340.1| Argininosuccinate synthase [Synechococcus sp. RS9917]
          Length = 401

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK++           +   +          G ++   R 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKQE-----------WGVEEVITFAADLGQGDELEPIRI 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  + F      P   + A  E   P      R +    L+ V R++
Sbjct: 52  KALEAGASQSLVGDLIDPFIREFAFPAIRANALYEGCYPLSTALARPLIARRLVEVAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|149925962|ref|ZP_01914225.1| zinc-binding dehydrogenase [Limnobacter sp. MED105]
 gi|149825250|gb|EDM84461.1| zinc-binding dehydrogenase [Limnobacter sp. MED105]
          Length = 336

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 13  DLDKNPKDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGVT 51
           D    P+D  V+V  +SGGV  +V   LL+  GY+V+G+T
Sbjct: 140 DHPVKPEDGPVLVTGVSGGV-GTVACLLLQHLGYEVVGLT 178


>gi|148642250|ref|YP_001272763.1| ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|222444577|ref|ZP_03607092.1| hypothetical protein METSMIALI_00189 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551267|gb|ABQ86395.1| predicted ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|222434142|gb|EEE41307.1| hypothetical protein METSMIALI_00189 [Methanobrevibacter smithii
           DSM 2375]
          Length = 343

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  +    VVA+SGGVDSS    L K  G++   VT+                  Q   +
Sbjct: 136 KESEKTEAVVALSGGVDSSFSLILAKYLGFNPTAVTI---------DPGTIILPNQYKRN 186

Query: 76  ARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
            +++ D +N  H     DY E                G    PC  C++ 
Sbjct: 187 IKKLTDQLNAGHEYIKADYSEI---------IRESLNGR-FHPCGRCSKH 226


>gi|114331974|ref|YP_748196.1| NAD+ synthetase [Nitrosomonas eutropha C91]
 gi|114308988|gb|ABI60231.1| NAD+ synthetase [Nitrosomonas eutropha C91]
          Length = 535

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V  A RL   D     +   V++ +SGGVDS++V A+     G D V  V +        
Sbjct: 258 VYSALRLGLRDFIDKNRISGVLIGLSGGVDSALVLAIAVDALGADRVSNVMM-------- 309

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98
                   A   + DA+ +   + V +      E F  
Sbjct: 310 ---PSPYTADISLEDAQIMAGNLGVHYTEIPITELFEQ 344


>gi|291440029|ref|ZP_06579419.1| NAD(+) synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291342924|gb|EFE69880.1| NAD(+) synthase [Streptomyces ghanaensis ATCC 14672]
          Length = 615

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G + V GV++                +G    DA  + 
Sbjct: 355 VLIGLSGGIDSALVAAIACDAVGAENVYGVSM-----------PSKYSSGHSRDDAAELA 403

Query: 81  DTINVSHYVFDYEERF 96
               +++     E  F
Sbjct: 404 RRTGLNYRTVAIEPMF 419


>gi|110597654|ref|ZP_01385939.1| GMP synthase [Chlorobium ferrooxidans DSM 13031]
 gi|110340774|gb|EAT59251.1| GMP synthase [Chlorobium ferrooxidans DSM 13031]
          Length = 513

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 36/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           D+ +      V+  +SGGVDS+V A L+ R  G  +  V +     RK    K       
Sbjct: 213 DIRQKAGKETVICGISGGVDSTVAAVLVSRAIGKQLHCVFVDNGLLRKNEAEK------- 265

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                      + +   + D  + F N    V  P       G T +   + +       
Sbjct: 266 ----VMSFLKPLGLRVTLADASDLFLNRLKSVASPEKKRKIIGRTFIQVFEEHMN----- 316

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 +           I S    G     +                +    ++    L
Sbjct: 317 ----QEKFLVQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKLKL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 361 IEPLRELFKDEVRAVGRELGIA 382


>gi|157107049|ref|XP_001649600.1| argininosuccinate synthase [Aedes aegypti]
 gi|122115039|sp|Q0IFL5|ASSY_AEDAE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|108879663|gb|EAT43888.1| argininosuccinate synthase [Aedes aegypti]
          Length = 412

 Score = 45.2 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+S +   L   GY+VI   +                  +D   AR    
Sbjct: 6   KILLAYSGGLDTSCILKWLLEKGYEVI-CFMA------------DVGQEEDFVAAREKAL 52

Query: 82  TINVS-HYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSV 132
            +      + D +  F    + P           Y  G +   PC+          L+  
Sbjct: 53  RVGAKDVIIKDMKRIFVEKFVWPAIQMGLVYEDRYLLGTSLARPCISIG-------LMES 105

Query: 133 TRQLGADVLATG 144
             +    +++ G
Sbjct: 106 AAEHSCSIISHG 117


>gi|322368466|ref|ZP_08043035.1| GMP synthase subunit B [Haladaptatus paucihalophilus DX253]
 gi|320552482|gb|EFW94127.1| GMP synthase subunit B [Haladaptatus paucihalophilus DX253]
          Length = 305

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 114/339 (33%), Gaps = 54/339 (15%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D   ++A+SGGVDSSV A L     Y  IG  L          RKG     + 
Sbjct: 14  EIREAVGDSHAIIALSGGVDSSVAAGLA----YKAIGDQLTPVYVDTGLMRKGETNQIRK 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            +           S  V + E+RF +A   V  P       GE               + 
Sbjct: 70  TFSYMS-------SLEVVEAEDRFFDALSGVTDPEEKRKVIGEQF-----------IREF 111

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
               R   AD L  G     R+      K    +    D+                  + 
Sbjct: 112 EREARVTDADYLVQGTIYPDRIESEGGIKSHHNVGGLPDVV-------------DFDGIV 158

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL 248
            P+ D+ K+ VR++AR +G+   ++  ++ + F   G    V+  +    A    +  H+
Sbjct: 159 EPVRDLYKDEVREVARALGM---EEIIAERMPFPGPGLAVRVIGEVTPEKAQVAREACHV 215

Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI-VGPRESLEVHRIYLRE 307
             + L  ++    +     +G G        V   ++    ++ V   ES +      +E
Sbjct: 216 VEEELEEYDPWQAFAAVVGKGTG--------VKGDNRVHGWIVAVRSVESRDGMTARAQE 267

Query: 308 INWLGDGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRN 344
           I+W      +  +    +   ++    +  P P  ++  
Sbjct: 268 IDWETLQRIQSRITGQNENVARVVYDVTHKP-PATIEYE 305


>gi|317479355|ref|ZP_07938489.1| PP-loop family protein [Bacteroides sp. 4_1_36]
 gi|316904429|gb|EFV26249.1| PP-loop family protein [Bacteroides sp. 4_1_36]
          Length = 234

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 37/135 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAGQDV 73
           ++++ +SGG DS  +  LL R        + V+ V   ++                  DV
Sbjct: 33  KILIGLSGGKDSLALVELLARRARVYKPRFSVVAVHVVMKNI------------PYQSDV 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSDLLS 131
              R   ++  V      +E  F          +  +     PC     NR      L +
Sbjct: 81  DYLREYVESWGVPF--VLFETEF-----DATTDTRKS-----PCFLCSWNRR---KALFT 125

Query: 132 VTRQLGADVLATGHY 146
           V ++ G + +A GH+
Sbjct: 126 VAKEQGCNKIALGHH 140


>gi|313227291|emb|CBY22437.1| unnamed protein product [Oikopleura dioica]
          Length = 388

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 18  PKDMRVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  +V +  SGG DS+V   V  +L    YD  G+ L L +  +      S      + 
Sbjct: 48  KRGQKVAIGASGGKDSAVLMQVMKILNER-YD-YGLKLCLLSIDEG----ISGYRDHSLE 101

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           + +   +   +   +  Y++ +    + ++        AG     C  C    +   L  
Sbjct: 102 EVKFHSNNYGLELKILSYKDLYNWSMDEIVS------VAGRKSN-CTFCGVFRR-QALDR 153

Query: 132 VTRQLGADVLATGH 145
              QLG D++ATGH
Sbjct: 154 GAWQLGVDIVATGH 167


>gi|254473458|ref|ZP_05086855.1| glutamine-dependent NAD(+) synthetase [Pseudovibrio sp. JE062]
 gi|211957574|gb|EEA92777.1| glutamine-dependent NAD(+) synthetase [Pseudovibrio sp. JE062]
          Length = 555

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++ AA+     G + V  + L                + + + DA+   
Sbjct: 290 VVLGLSGGIDSAICAAMAVDALGAERVHCIML-----------PYRYTSEESIKDAKACA 338

Query: 81  DTINVSHYVFDYEE 94
           D + V +      E
Sbjct: 339 DALGVKYDTIPIAE 352


>gi|213512670|ref|NP_001133642.1| asparagine synthetase [Salmo salar]
 gi|209154786|gb|ACI33625.1| Asparagine synthetase [Salmo salar]
 gi|223649242|gb|ACN11379.1| Asparagine synthetase [Salmo salar]
          Length = 562

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYD---AR 77
           R+   +SGG+DSS+VAA+L            +L    K     +      +D  D   AR
Sbjct: 253 RIGCLLSGGLDSSLVAAMLV-----------KLAKEEKLKYPIQTFAIGAEDSPDILAAR 301

Query: 78  RVCDTINVSHYVFDYEER 95
           +V   I   H+  ++   
Sbjct: 302 KVASYIGSEHHEVNFTPE 319


>gi|160889079|ref|ZP_02070082.1| hypothetical protein BACUNI_01500 [Bacteroides uniformis ATCC 8492]
 gi|270293809|ref|ZP_06200011.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861546|gb|EDO54977.1| hypothetical protein BACUNI_01500 [Bacteroides uniformis ATCC 8492]
 gi|270275276|gb|EFA21136.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 249

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 37/135 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAGQDV 73
           ++++ +SGG DS  +  LL R        + V+ V   ++                  DV
Sbjct: 33  KILIGLSGGKDSLALVELLARRARVYKPRFSVVAVHVVMKNI------------PYQSDV 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSDLLS 131
              R   ++  V      +E  F          +  +     PC     NR      L +
Sbjct: 81  DYLREYVESWGVPF--VLFETEF-----DATTDTRKS-----PCFLCSWNRR---KALFT 125

Query: 132 VTRQLGADVLATGHY 146
           V ++ G + +A GH+
Sbjct: 126 VAKEQGCNKIALGHH 140


>gi|37527188|ref|NP_930532.1| NAD synthetase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786622|emb|CAE15684.1| NH(3)-dependent NAD+ synthetase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 540

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS +  A+     G + V  V +                +   + DA++  
Sbjct: 283 VLLGLSGGIDSGLTLAIAVDALGKEHVQAVMM-----------PFRYTSEMSIEDAKKQA 331

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYA 109
           D + V   V   E      V   F + + 
Sbjct: 332 DMLGVEFNVVSIEP-----VFDAFMAQFE 355


>gi|327399684|ref|YP_004340553.1| Thiamine biosynthesis protein [Hippea maritima DSM 10411]
 gi|327182313|gb|AEA34494.1| Thiamine biosynthesis protein [Hippea maritima DSM 10411]
          Length = 330

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 47/256 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDAR 77
           + + V   SGG+DS +   ++K  G +V  + +Q   YN      ++    +G  +  AR
Sbjct: 5   NKKCVALYSGGLDSLLAILIVKSLGVEVYPLFVQTPFYNKEIDKLKEQLNKSGLALETAR 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                          ++ +   ++ P    +  G+   PC+DC     +        ++G
Sbjct: 65  D--------------DKAYIEMLLNP---RFGYGKNLNPCIDCKAFF-YKKAKEYADKIG 106

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  + TG  +  R          R + +      D    L   + + L +       M+K
Sbjct: 107 ASFIITGEVLGQRPMSQRSYTVLRTIEK-HAGLID--LVLRPLSAKCLKETI-----MEK 158

Query: 198 ESVR-----------------DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
           E +                  +LA+  G++  +       C +   ++   +K +     
Sbjct: 159 EGIVDRDKLYCIQGRTRKAQFELAKTFGIEEFESP--AGGCLLTDTQFSARLKEMLDKKD 216

Query: 241 LEGDIVHLNGQILGRH 256
                V +    +GRH
Sbjct: 217 ELNSPVAIELLKIGRH 232


>gi|320169122|gb|EFW46021.1| ATP-binding domain-containing protein 3 [Capsaspora owczarzaki ATCC
           30864]
          Length = 400

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 14/129 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A +LKR    Y+  G+ L L +  +      +      +   +R 
Sbjct: 53  RVAIGASGGKDSTVLAYVLKRLNDMYN-YGIELFLLSVDEG----ITGYRDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +   +  Y+E +     +               C  C    +   L      LGA
Sbjct: 108 EQAYGIPLKIVSYQELYGWT--MDAIVKEVGL---KNNCTFCGVFRR-QALDRGAALLGA 161

Query: 139 DVLATGHYI 147
           + + TGH  
Sbjct: 162 NKIVTGHNA 170


>gi|119505580|ref|ZP_01627651.1| NAD synthase [marine gamma proteobacterium HTCC2080]
 gi|119458523|gb|EAW39627.1| NAD synthase [marine gamma proteobacterium HTCC2080]
          Length = 536

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  A+     G + V  V +                A   + DA+   
Sbjct: 281 VVLGLSGGIDSAVTLAVAVDALGAERVNAVMM-----------PFRYTASISIEDAQAQA 329

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
             + V++     E  + +       +    G  P 
Sbjct: 330 AAMGVAYRSISIEPLYES--FNGALAEEFEGLAPN 362


>gi|15896224|ref|NP_349573.1| thiamine biosynthesis protein ThiI [Clostridium acetobutylicum ATCC
           824]
 gi|20140711|sp|Q97EY4|THII_CLOAB RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|15026026|gb|AAK80913.1|AE007794_5 Thiamine biosynthesis enzyme, THII [Clostridium acetobutylicum ATCC
           824]
 gi|325510379|gb|ADZ22015.1| Thiamine biosynthesis enzyme, THII [Clostridium acetobutylicum EA
           2018]
          Length = 384

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVCDT 82
           ++ +SGG+DS V   ++ R G +V GV          S    S  A   V D AR +   
Sbjct: 175 LLMLSGGIDSPVAGYMMARRGVEVSGVYFH-------SAPYTSERAKDKVKDLARILTKY 227

Query: 83  IN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           I  ++ YV  + +  +  +I                    R    S    +    G + +
Sbjct: 228 IGEMTLYVVPFTDI-QMQIIEKCRED--------ELTIIMRRFMMSIACKIAEDKGMESV 278

Query: 142 ATGHYI 147
           ATG  I
Sbjct: 279 ATGESI 284


>gi|88807867|ref|ZP_01123378.1| hypothetical protein WH7805_06891 [Synechococcus sp. WH 7805]
 gi|88787906|gb|EAR19062.1| hypothetical protein WH7805_06891 [Synechococcus sp. WH 7805]
          Length = 299

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 42/215 (19%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +   +  RL +L          V VA SGGVDS++VAA+              L +   A
Sbjct: 12  LSEDDENRLEALRCLLRSAGT-VCVAYSGGVDSTLVAAIACEQ----------LGDHAFA 60

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                   A   + +AR     + + H   +  E            +Y++  T   C  C
Sbjct: 61  VTGVSPSLAPHLLEEARLQARWLEIRHLEVETSEL--------NDPNYSSNPTD-RCFAC 111

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            + +    L  + +      +  G      + + D G  R  +         Q+      
Sbjct: 112 KQELHL-HLKDIAKAADGAQVLDG------VNLDDLGDHRPGIEAAR-----QAGVRSPL 159

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
            + Q+           K ++R L++ +G    DK 
Sbjct: 160 AELQID----------KATIRRLSKALGFPWWDKP 184


>gi|110633816|ref|YP_674024.1| NAD synthetase [Mesorhizobium sp. BNC1]
 gi|110284800|gb|ABG62859.1| NH(3)-dependent NAD(+) synthetase [Chelativorans sp. BNC1]
          Length = 572

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             VV+ +SGGVDS++ AAL     G + V  V L                + + + DA  
Sbjct: 305 KNVVLGLSGGVDSALCAALAVDALGEERVRAVML-----------PYRYTSKESLRDAEA 353

Query: 79  VCDTINVSHYVFDYEE 94
               +   + +    E
Sbjct: 354 CARALGCRYDIVPINE 369


>gi|160946268|ref|ZP_02093479.1| hypothetical protein PEPMIC_00230 [Parvimonas micra ATCC 33270]
 gi|158447791|gb|EDP24786.1| hypothetical protein PEPMIC_00230 [Parvimonas micra ATCC 33270]
          Length = 305

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 22  RVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++ VA+SGG DS ++A L   LK++G D        +     +   G   + +++     
Sbjct: 67  KIAVAISGGKDSLIMAKLFQELKKNGKD-------NFELEFIAMDPGYHPSIKELL--LE 117

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +    +   + F  AV    A  Y       PC  C   ++   L +  ++LG 
Sbjct: 118 NASYLEIPLTYYP-ADIF--AVADKIAGDY-------PCYMC-ARMRRGSLYAKAKELGC 166

Query: 139 DVLATGHYIR 148
           + LA GH+  
Sbjct: 167 NKLALGHHFN 176


>gi|304319845|ref|YP_003853488.1| NAD(+) synthase [Parvularcula bermudensis HTCC2503]
 gi|303298748|gb|ADM08347.1| NAD(+) synthase [Parvularcula bermudensis HTCC2503]
          Length = 555

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++VAA+     G D +   +                + + + DA     
Sbjct: 290 VVLGLSGGIDSAMVAAIAVDALGPDNVRCVM----------LPSRYTSTESLDDAAACAK 339

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGAD 139
            + V+    + E     AV     +   AG +     + N    ++ + L++++ + G  
Sbjct: 340 ALGVTLDRVEIEPM--IAVFTDSLAPLFAGRSAD-VTEENLQSRIRGTALMALSNKFGCL 396

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           +L+TG                  M    +  +D
Sbjct: 397 LLSTG---NKSEMATGYATLYGDMNGAYNPLKD 426


>gi|327401723|ref|YP_004342562.1| Argininosuccinate synthase [Archaeoglobus veneficus SNP6]
 gi|327317231|gb|AEA47847.1| Argininosuccinate synthase [Archaeoglobus veneficus SNP6]
          Length = 393

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 53/207 (25%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M+VV++ SGG+D++V   LLK   G+D V+ VT+ +    +             + +A +
Sbjct: 1   MKVVLSYSGGLDTTVCIPLLKEKYGFDEVVTVTVDIGQPPEE------------IKEAEK 48

Query: 79  VCDTINVSHYVFDYEERFRNAVI-------VPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
                   HY  D +E F   +              Y  G +    +   + V       
Sbjct: 49  RGKKYADKHYTIDAKEEFVRLLFRLIKANGDY--EGYVLGTSLARPLIAEKIV------E 100

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V ++  AD +A G                   C       DQ  F     Q     +  P
Sbjct: 101 VAKKENADAIAHG-------------------CTGK--GNDQLRFENVFYQYGF-RVIAP 138

Query: 192 LGD--MKKESVRDLAREMGLDIADKSD 216
           + +  + +E   + A++ G+++    +
Sbjct: 139 MRELNLTREWEIEYAKQHGIEVPVTKE 165


>gi|197120716|ref|YP_002132667.1| NAD+ synthetase [Anaeromyxobacter sp. K]
 gi|196170565|gb|ACG71538.1| NAD+ synthetase [Anaeromyxobacter sp. K]
          Length = 569

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A +     G + V+GV +                +G    DA  +  
Sbjct: 314 VVGLSGGIDSALTACIAAEALGAENVLGVAM-----------PSRYSSGHSREDAAELAR 362

Query: 82  TINVSH 87
            + V  
Sbjct: 363 NLGVRF 368


>gi|77460619|ref|YP_350126.1| ExsB [Pseudomonas fluorescens Pf0-1]
 gi|110816245|sp|Q3K7W9|QUEC_PSEPF RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|77384622|gb|ABA76135.1| preQ(0) biosynthesis protein QueC [Pseudomonas fluorescens Pf0-1]
          Length = 230

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          N    R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + ++ A
Sbjct: 6  NTSQKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRSHAE-LHAA 54

Query: 77 RRVCDTIN-VSHYVF 90
           RV   +  V H V 
Sbjct: 55 ARVARDLGVVEHKVI 69


>gi|88705615|ref|ZP_01103325.1| secreted protein [Congregibacter litoralis KT71]
 gi|88700128|gb|EAQ97237.1| secreted protein [Congregibacter litoralis KT71]
          Length = 226

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V AL +  GY+              S   G     +    A RV 
Sbjct: 5  KKAVVLVSGGLDSTTVLALAREQGYEC----------YSLSFDYGQRHRAELFA-AERVS 53

Query: 81 DTIN-VSHYVF 90
           T+  V H V 
Sbjct: 54 KTLGDVEHKVV 64


>gi|239931662|ref|ZP_04688615.1| NH(3)-dependent NAD(+) synthetase [Streptomyces ghanaensis ATCC
           14672]
          Length = 588

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G + V GV++                +G    DA  + 
Sbjct: 328 VLIGLSGGIDSALVAAIACDAVGAENVYGVSM-----------PSKYSSGHSRDDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               +++     E  F
Sbjct: 377 RRTGLNYRTVAIEPMF 392


>gi|154495895|ref|ZP_02034591.1| hypothetical protein BACCAP_00175 [Bacteroides capillosus ATCC
           29799]
 gi|150274778|gb|EDN01834.1| hypothetical protein BACCAP_00175 [Bacteroides capillosus ATCC
           29799]
          Length = 257

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 65/223 (29%), Gaps = 60/223 (26%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG--------YDVIGVTLQLYNSRKASKRK 64
           D D      R+ V +SGG DS  + A L   G        + V   TL + +        
Sbjct: 15  DYDMIKPGDRIAVGVSGGKDSITLLAGL--AGLRTFYPVPFTVEAFTLDMGHVDGGE--- 69

Query: 65  GSCCAGQDVYDARRVCDTINVS---------HYVFDYEERFRNAVIVPFASSYAAGETPL 115
                G D       C  ++V          H +FD  +                     
Sbjct: 70  -----GMDFTPVAEFCKELDVPYTILPSEIHHIIFDLRKE------------------KN 106

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERD 172
           PC  C   ++   L +     G   +A GH+        DD      +            
Sbjct: 107 PCSMC-AKMRRGALHNALMDHGIHKIALGHHF-------DDAVETFFLSLFYEGRISCFQ 158

Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
              +L  T   Q+     PL  + + S+R +A + G  +    
Sbjct: 159 PVTYLDRTDIVQIR----PLLYLSEASIRTIAAKEGYPVVHNP 197


>gi|320451026|ref|YP_004203122.1| Veg136 protein [Thermus scotoductus SA-01]
 gi|320151195|gb|ADW22573.1| Veg136 protein [Thermus scotoductus SA-01]
          Length = 321

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 21/129 (16%)

Query: 22  RVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           RV+VA+SGG DS     V   L   GY+ +G+ LQL              + + +   + 
Sbjct: 49  RVLVAVSGGKDSLALWDVLWRL---GYEAVGLHLQL---------GIGAYSERSLEVTQS 96

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +  +V D  + +   V  P  +  +       C    R +       V  + G 
Sbjct: 97  FAQDRGLELWVVDLRQAYGFGV--PELAELSGRVACSACGLSKRYII----NQVAVEGGF 150

Query: 139 DVLATGHYI 147
            V+ATGH +
Sbjct: 151 RVVATGHNL 159


>gi|210624190|ref|ZP_03294245.1| hypothetical protein CLOHIR_02201 [Clostridium hiranonis DSM 13275]
 gi|210153177|gb|EEA84183.1| hypothetical protein CLOHIR_02201 [Clostridium hiranonis DSM 13275]
          Length = 250

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 18/134 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +      ++ + +SGG DS    ALL      V+    +    +           G D
Sbjct: 19  DFNLIQDGDKIAIGLSGGKDS---MALLH-----VLSTYRRFSPEKFELMAICLQMGGAD 70

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                 +C  ++V  +           V+              PC  C   ++   L   
Sbjct: 71  NSSLHELCKELDVEFHEI---PTDIKEVVFDVRQE------KNPCSLC-AKMRRGALNDY 120

Query: 133 TRQLGADVLATGHY 146
             + G + +A GH+
Sbjct: 121 AVKFGCNKVALGHH 134


>gi|86157330|ref|YP_464115.1| ATPase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123499724|sp|Q2IPE3|TTCA_ANADE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|85773841|gb|ABC80678.1| tRNA s(2)C-32 sulfurtransferase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 290

 Score = 44.8 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 90/262 (34%), Gaps = 58/262 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-------YNSRKASKRKG 65
           D D   +  R++VA+SGG DS  +  LL           ++L       ++    +  +G
Sbjct: 21  DFDLVSQGDRIMVAVSGGKDSYTLLHLL-----------MRLRERAPIDFDLVAVNLDQG 69

Query: 66  SCCAG-QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                   V D  R   ++ V + +    + +   V+         G+T  P       +
Sbjct: 70  QPGFPAHVVEDHLR---SLGVPYRML-QRDTYS--VVRRLVPE---GKTTCPVCS---RL 117

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +   L +   ++G   +A GH+         D     ++   +      S  L +   + 
Sbjct: 118 RRGVLYNAAVEMGCTKIALGHH--------RDDLVETLLLSAL-----YSGALKSMPPKL 164

Query: 185 LCD-----LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN--- 236
                   +  PL    +E V   A  M   I       D+C  Q       VKR+    
Sbjct: 165 RSRDGRNVVIRPLCYAAEEDVAAFAEAMRFPIVPC----DLCGSQPNLRRKRVKRLLAEL 220

Query: 237 --AGIALEGDIVHLNGQILGRH 256
                A++G+++H  G ++  H
Sbjct: 221 SAEHPAVKGNLLHALGHVVPSH 242


>gi|330507845|ref|YP_004384273.1| glutamine-dependent NAD(+) synthetase [Methanosaeta concilii GP-6]
 gi|328928653|gb|AEB68455.1| glutamine-dependent NAD(+) synthetase [Methanosaeta concilii GP-6]
          Length = 550

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DSS+VAA+  +  G  +V+GV L                    + DA  + 
Sbjct: 288 VLLGLSGGIDSSLVAAIAVQALGPNNVLGVLL-----------PSPYTRQSSIDDALALA 336

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD--LLSVTRQ 135
             + +        D    F   +   F     AG  P    + N   +     L++++ +
Sbjct: 337 ANLGIKTISILLTDIMGSFELELAEHF-----AGR-PKDITEENIQARIRATLLMALSNK 390

Query: 136 LGADVLATG 144
            G+ +LATG
Sbjct: 391 YGSILLATG 399


>gi|154248857|ref|YP_001409682.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154152793|gb|ABS60025.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 457

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 42/205 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDV---IGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V++A+SGGVDS V+  L  R   ++   IGV             K    A  +V   ++ 
Sbjct: 38  VLLAVSGGVDSIVMLDLFNRAKDELLINIGV--------ATFNHKLRTEADDEVIFVQKF 89

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + +  +           V +         +  L   +  R +++  L    ++ G  
Sbjct: 90  CEGLGIPFF------PGEADVKMYC------EQNKLSIEEGARILRYEFLKRTAKENGYS 137

Query: 140 VLATGHYIRSRLYV----GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            +AT H     L         G     +             +       +  L F     
Sbjct: 138 FIATAHNANDLLETIILRQIKGTGPFGLA-----------AIKPINGIFIRPLIF----F 182

Query: 196 KKESVRDLAREMGLDIADKSDSQDI 220
            ++ + + A+E  L+      + DI
Sbjct: 183 TRKEIEEYAKERKLEYVIDRTNFDI 207


>gi|91776687|ref|YP_546443.1| ExsB [Methylobacillus flagellatus KT]
 gi|118574290|sp|Q1GYT5|QUEC_METFK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|91710674|gb|ABE50602.1| preQ(0) biosynthesis protein QueC [Methylobacillus flagellatus
          KT]
          Length = 229

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
           + VV +SGG+DS+ V A+ +  GYDV  ++L
Sbjct: 3  KKAVVLLSGGLDSATVLAIARHQGYDVYCLSL 34


>gi|297183519|gb|ADI19649.1| GMP synthase, pp-ATPase domain/subunit [uncultured delta
           proteobacterium HF0770_45N15]
          Length = 624

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSC 67
            +L + +   D +V++ +SGGVDSSV  ALL +  G + V G+ +     RK    +   
Sbjct: 218 TTLRIQEEVGDRKVLMFLSGGVDSSVAFALLVKALGTERVHGLCIDNGFMRKHESEQIMA 277

Query: 68  CAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
           C              +   +    DY   F  AV                 +  +     
Sbjct: 278 CY-----------RKLGYTNVEARDYSATFLTAVSGMTDPQAKRAAVGAAFIQMHDR--- 323

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
              L        + +  G        +   G     + +       +   L A+ Q    
Sbjct: 324 --FLQELDLRPEEWML-GQGTLYPDIIESGGTEHANVIKSHHNRVQEVVDLMASGQ---- 376

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL D+ K+ VR + + + L 
Sbjct: 377 -VVEPLKDLYKDEVRQVGKLLDLP 399


>gi|282861535|ref|ZP_06270599.1| NAD+ synthetase [Streptomyces sp. ACTE]
 gi|282563351|gb|EFB68889.1| NAD+ synthetase [Streptomyces sp. ACTE]
          Length = 584

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G + V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALVAAIACDALGPENVYGVSM-----------PSKYSSDHSKGDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               +++     E  F
Sbjct: 377 RRTGLNYRTVSIEAMF 392


>gi|260583639|ref|ZP_05851387.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Granulicatella elegans ATCC 700633]
 gi|260158265|gb|EEW93333.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Granulicatella elegans ATCC 700633]
          Length = 405

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
           RV + +SGG+DS V A L  + G +V  V  
Sbjct: 178 RVSLMLSGGIDSPVAAYLAMKRGMEVQCVHF 208


>gi|220935393|ref|YP_002514292.1| ExsB ATPase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996703|gb|ACL73305.1| ExsB ATPase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 229

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+ V A+ +  GY    ++ +                  ++  A RV  + 
Sbjct: 9  VVLLSGGMDSATVLAIAREQGYVCHALSFRY-----------GQRHRAELDAAARVAKSQ 57

Query: 84 N-VSHYVFDY 92
            V H V D 
Sbjct: 58 GAVRHQVVDL 67


>gi|260815136|ref|XP_002602330.1| hypothetical protein BRAFLDRAFT_127327 [Branchiostoma floridae]
 gi|229287638|gb|EEN58342.1| hypothetical protein BRAFLDRAFT_127327 [Branchiostoma floridae]
          Length = 471

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 13/137 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +   V +A SGG DS+V+A L+K   + +D  G+TL L +  +      +      +  
Sbjct: 47  KRGETVAIAASGGKDSTVLAHLMKLLNERHD-YGLTLFLLSVDEG----ITGYRDDSLET 101

Query: 76  ARRVCDTINVSHYVFDYE----ERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLL 130
            +R      +   V  Y+       +  +                 C  C    +   L 
Sbjct: 102 VKRNQQQYELPLKVVSYKILSTHSEKQELYGWTMDEIVRQIGLKNNCTFCGVFRR-QALY 160

Query: 131 SVTRQLGADVLATGHYI 147
                LG D + TGH  
Sbjct: 161 RGAMMLGVDKIVTGHNA 177


>gi|221055251|ref|XP_002258764.1| gmp synthetase [Plasmodium knowlesi strain H]
 gi|193808834|emb|CAQ39536.1| gmp synthetase, putative [Plasmodium knowlesi strain H]
          Length = 547

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 36/141 (25%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA------------------LL-KRDGYDVI----G 49
           ++ K  KD  V+ AMSGG+DS+V AA                  LL K +G  V     G
Sbjct: 239 NIKKYAKDHYVIAAMSGGIDSTVAAAFTHQIFKERFYGIFIDNGLLRKNEGEQVYSFLKG 298

Query: 50  VT--LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV---PF 104
           +   + L     +     +     D    R++   +        + E F  AV       
Sbjct: 299 LFPDMNLTKIDASEIFLNNLKGVTDPEQKRKIIGKL--------FIEEFEKAVKNINIDI 350

Query: 105 ASSYAAGETPLPCVDCNRTVK 125
             +Y    T  P +  ++  K
Sbjct: 351 EKTYLLQGTLYPDIIESKCSK 371


>gi|19112856|ref|NP_596064.1| cytosolic thiouridylase subunit Ctu1 [Schizosaccharomyces pombe
           972h-]
 gi|74582842|sp|O94282|CTU1_SCHPO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|3850068|emb|CAA21879.1| cytosolic thiouridylase subunit Ctu1 [Schizosaccharomyces pombe]
          Length = 335

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  RV +  SGG DS+V+A    LL    YD  G+ L L +  +     G      D  D
Sbjct: 50  RGERVGIGASGGKDSTVLAYVMKLLNER-YD-YGLELYLISVDE-----GIRGYRDDSLD 102

Query: 76  -ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             +R      +   +  Y + +    +    +      T   C  C    +   L     
Sbjct: 103 TVKRNQQQYGLPMKIVSYADLYDGWTMDNVVARIG---TKNNCTYCGVFRR-QALDRAAL 158

Query: 135 QLGADVLATGHYI 147
            L    L TGH  
Sbjct: 159 SLDIHHLVTGHNA 171


>gi|289522842|ref|ZP_06439696.1| ThiI family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503866|gb|EFD25030.1| ThiI family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 190

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 27/144 (18%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
             K  + ++  SGG+DS +   LL+R+G  V  +                         +
Sbjct: 7   KNKSPKALLLFSGGLDSLLAGELLRRNGVTVTCL--------------AFTTPFFSAEKS 52

Query: 77  RRVCDTINVSHYVFDY-EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-- 133
                  N    +    E+ +   +  P    +  G+   PC+DC+     + +L     
Sbjct: 53  IIAARRYNFPLIIAPLPEKEYIKLLFDP---PHGFGKCMNPCIDCH-----ALMLKRAGN 104

Query: 134 --RQLGADVLATGHYIRSRLYVGD 155
             R+ G D LATG  +  R     
Sbjct: 105 LMRERGYDFLATGEVLGERPKSQT 128


>gi|266619710|ref|ZP_06112645.1| putative NH(3)-dependent NAD(+) synthetase [Clostridium hathewayi
           DSM 13479]
 gi|288868734|gb|EFD01033.1| putative NH(3)-dependent NAD(+) synthetase [Clostridium hathewayi
           DSM 13479]
          Length = 94

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 23  VVVAMSGGVDSSV---VAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +A SGGVDSS+    AA   K+ G  V  VT         S+   SC    D+  ARR
Sbjct: 24  ICLAFSGGVDSSLLLKAAAEAVKKTGKKVYAVTF-------DSRLHPSC----DLEIARR 72

Query: 79  VCDTINVSHYVFDYEERFRNAV 100
           V + +   H V   +E  +  +
Sbjct: 73  VAEELGGIHEVITVDELEQKEI 94


>gi|317154426|ref|YP_004122474.1| hypothetical protein Daes_2732 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944677|gb|ADU63728.1| hypothetical protein Daes_2732 [Desulfovibrio aespoeensis Aspo-2]
          Length = 354

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 27/228 (11%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS +    +   G  V+G+          +   G         D        
Sbjct: 8   LALLSGGLDSILAMRTVMDQGLAVLGLHF-------MTPFFGKAHLIPFWRD------HY 54

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +     D  +R+ + ++     S   G+   PC+DC   +     + +    GA  L +
Sbjct: 55  GIEVEAVDISDRYVDMLLS--GPSQGFGKWLNPCIDCKIAM-LGRAVELMPAYGAAFLVS 111

Query: 144 GHYIRSRLYVGD---------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           G  +  R                  R ++ RP+         +  +       L    G 
Sbjct: 112 GEVLGQRPMSQRADALNVITKRAGVRDLLLRPLCARNLPPTPMEESGLVDRARLLDWRGR 171

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            ++    +LA   G      + +   C  +       V+ +      E
Sbjct: 172 GRRPQ-YELAERYGF-TEIPTPAGGCCLTEVQGAARFVQLLLYRPRPE 217


>gi|218885978|ref|YP_002435299.1| thiamine biosynthesis protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756932|gb|ACL07831.1| thiamine biosynthesis protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 368

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 30/198 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V  +SGG+DS +   +++  G  V  +          S   G     +            
Sbjct: 9   VALLSGGLDSILAVKVIEEQGLAVKCLHF-------VSPFFGKPGKVKHWE------AIY 55

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            +     D  + F   +      ++  G+   PCVDC + +  S    +  + GA  + T
Sbjct: 56  GLDIAAVDMGDAFAALLRER--PAHGFGKVLNPCVDC-KIIMISRAREMMERYGASFIIT 112

Query: 144 GHYIRSRLYVG---------DDGKRRRIMCRPMDLER-DQSYF-LFATTQQQLCDLRFPL 192
           G  +  R              D   + ++ RP+  ++ D +         +      F  
Sbjct: 113 GEVLGQRPMSQRRDTLNVIRRDAGVKELLLRPLCAQKLDPTPAEESGLVDRSRLHAIF-- 170

Query: 193 GDMKKESVRDLAREMGLD 210
           G  +KE +  LA + GL 
Sbjct: 171 GRGRKEQM-ALAEKYGLT 187


>gi|172039283|ref|YP_001805784.1| argininosuccinate synthase [Cyanothece sp. ATCC 51142]
 gi|226697531|sp|B1WTK3|ASSY_CYAA5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|171700737|gb|ACB53718.1| argininosuccinate synthetase [Cyanothece sp. ATCC 51142]
          Length = 400

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 13/140 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +   +          G ++   + 
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKHE-----------WGVDEVITLAADLGQGDELGPIQA 51

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  V   V D    F          + A  E+  P      R +    L+    + 
Sbjct: 52  KALKSGAVESLVEDATAEFVTDYAFKAIKANALYESRYPLSTALARPLIAKLLVEAAEKY 111

Query: 137 GADVLATGHYIRSRLYVGDD 156
           GAD +A G   +    V  D
Sbjct: 112 GADAVAHGCTAKGNDQVRFD 131


>gi|220915428|ref|YP_002490732.1| NAD+ synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953282|gb|ACL63666.1| NAD+ synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 569

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A +     G + V+GV +                +G    DA  +  
Sbjct: 314 VVGLSGGIDSALTACIAAEALGAENVLGVAM-----------PSRYSSGHSREDAAELAR 362

Query: 82  TINVSH 87
            + V  
Sbjct: 363 NLGVRF 368


>gi|308048035|ref|YP_003911601.1| argininosuccinate synthase [Ferrimonas balearica DSM 9799]
 gi|307630225|gb|ADN74527.1| argininosuccinate synthase [Ferrimonas balearica DSM 9799]
          Length = 402

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S +   LK   +D   V              G      +  +A+ + 
Sbjct: 5   KKVVLAYSGGLDTSAIIPWLKEQ-HDCEVV--------AFVADVGQGAEELEGVEAKAIA 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
              + S +V D ++ F +  I P          +Y  G      +     V       + 
Sbjct: 56  SGAS-SCHVVDLKDAFVSEYINPILKTGALYEGTYLLGTAMARPIIAKAQV------ELA 108

Query: 134 RQLGADVLATG 144
            ++GAD LA G
Sbjct: 109 LKVGADALAHG 119


>gi|170288087|ref|YP_001738325.1| NAD+ synthetase [Thermotoga sp. RQ2]
 gi|170175590|gb|ACB08642.1| NAD+ synthetase [Thermotoga sp. RQ2]
          Length = 281

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 45/209 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS+VV +L  +  G D V G+   +   R +SK          V DA  +C+
Sbjct: 22  VVGVSGGIDSAVVLSLCVQALGKDRVFGL---ILPERDSSKDS--------VKDAVELCE 70

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-------------CNRTVKFSD 128
           ++ V          ++   I P            P +               N   K   
Sbjct: 71  SLKV---------EYKIKPITPILRKIGVYRLFPPKLFFPESVVKRYVLNKWNSLSK-DP 120

Query: 129 LLSVTRQLGADVLATG-------HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
            L   R  G +    G       H IR  L   +  KR   +    +     +       
Sbjct: 121 FLDDLRNSGPNEFLKGLAYYRIKHRIRMCLLYFEAEKRGYAVVGTTNRTEYLTGLYVKWG 180

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            + +     P+  + K  V +LARE+ + 
Sbjct: 181 DEAVD--IEPIMHLYKTQVFELARELNIP 207


>gi|187735066|ref|YP_001877178.1| Argininosuccinate synthase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425118|gb|ACD04397.1| Argininosuccinate synthase [Akkermansia muciniphila ATCC BAA-835]
          Length = 430

 Score = 44.8 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M++VVA SGG+D+SV+   LK                       G       +  A+ + 
Sbjct: 1   MKIVVAYSGGLDTSVLLKWLKEKY---------NAEIIAYCADVGQAEELDGLE-AKALA 50

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASS-------YAAGET-PLPCVDCNRTVKFSDLLSV 132
              +   ++ D +E F    I P   +       Y  G +   PC+         D++ +
Sbjct: 51  TGAS-KCFIGDLKEDFATNYIFPMIQANALYEGRYLLGTSIARPCIS-------KDMVDL 102

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 103 AIREGADAIAHG 114


>gi|282879854|ref|ZP_06288581.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1]
 gi|281306248|gb|EFA98281.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1]
          Length = 448

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 24 VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          +VA+SGG DS V     L+  GY +  V    +   + + R        D+   + +C  
Sbjct: 25 LVALSGGADS-VCLLRCLQALGYRLEAVHCHFHLRAEEADR--------DLSFCQDLCAK 75

Query: 83 INVSHYVFDY 92
          + +  +   +
Sbjct: 76 LQIPFHSTHF 85


>gi|221119829|ref|XP_002168506.1| PREDICTED: similar to guanine monphosphate synthetase, partial
           [Hydra magnipapillata]
          Length = 652

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 32/207 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+  +SGGVDS+V   LL++  G + VI V +     RK    K                
Sbjct: 199 VLSLVSGGVDSTVCTILLQKAIGVERVIAVHIDNGFLRKDESEKVKQLYEYH-------- 250

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---------CVDCNRTVKFSDLLS 131
               +  +V++ +  F ++             T              +  R +     + 
Sbjct: 251 ---GLKLHVYNEKHHFLHSSTR--IPKKTETGTVNIQVGPLHSVTDPEEKRKIIGDTFIE 305

Query: 132 VTRQLGADVLATGH--YIRSRLYVGDDGKRRRIMCRPM-DLER---DQSYFLFATTQQQL 185
           V  ++  D+        +       D  +    +        +   + +  +    ++  
Sbjct: 306 VCERILNDLKLDPETTLLAQGTLRPDLIESASHLASGNACTIKTHHNDTNMVRQLREK-- 363

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIA 212
             +  PL D  K+ VR L R++G+  A
Sbjct: 364 GRIVEPLKDFHKDEVRALGRQLGVPHA 390


>gi|189219547|ref|YP_001940188.1| Argininosuccinate synthase [Methylacidiphilum infernorum V4]
 gi|189186405|gb|ACD83590.1| Argininosuccinate synthase [Methylacidiphilum infernorum V4]
          Length = 399

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 57/212 (26%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M++V+A SGG+D+SV+   LK   Y  +VI            +              A++
Sbjct: 1   MKIVLAYSGGLDTSVILRWLKES-YEAEVIAF---------CADLGQQEELEGLEERAKK 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLS 131
           +  +      + D    F +  + P         + Y  G +    +   R V       
Sbjct: 51  LGAS---KCIIEDLTREFVSDYVYPMIRAGAIYENQYLLGTSIARPLIAKRQV------E 101

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
           + ++ GAD LA G                           DQ    F  T   L     +
Sbjct: 102 IAKREGADYLAHG---------------------ATGKGNDQ--IRFELTYAALAPDLKV 138

Query: 189 RFPLGDMK---KESVRDLAREMGLDIADKSDS 217
             P  +     +E +   A + G++I    + 
Sbjct: 139 ISPWREWNFKGREDLIAYAHKQGIEIPVSPER 170


>gi|229057066|ref|ZP_04196458.1| hypothetical protein bcere0026_11820 [Bacillus cereus AH603]
 gi|229132237|ref|ZP_04261093.1| hypothetical protein bcere0014_11750 [Bacillus cereus BDRD-ST196]
 gi|229166274|ref|ZP_04294033.1| hypothetical protein bcere0007_12480 [Bacillus cereus AH621]
 gi|228617219|gb|EEK74285.1| hypothetical protein bcere0007_12480 [Bacillus cereus AH621]
 gi|228651175|gb|EEL07154.1| hypothetical protein bcere0014_11750 [Bacillus cereus BDRD-ST196]
 gi|228720207|gb|EEL71786.1| hypothetical protein bcere0026_11820 [Bacillus cereus AH603]
          Length = 223

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+       +   +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIQQFEEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H + D  
Sbjct: 51 --AAEIAKELGIKHTILDMS 68


>gi|227903173|ref|ZP_04020978.1| cell cycle [Lactobacillus acidophilus ATCC 4796]
 gi|227868978|gb|EEJ76399.1| cell cycle [Lactobacillus acidophilus ATCC 4796]
          Length = 418

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 55/215 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +++VA SGG DS    ALL       K+  +++I      +  R  S+ +       
Sbjct: 15  ENKKLLVAASGGPDS---MALLDMLKDLQKKQKFELIAAHF-NHQLRSDSEEETRILKDY 70

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLL 130
                   C    +                  F + +A  E P   +    R V+++ L 
Sbjct: 71  --------CQKNEIPL----------------FVAKWAKNEQPKSGIEAAAREVRYNFLT 106

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC--RPMDLERDQS----YFLFATTQQQ 184
            + +   AD L T H+       GDD     ++   R  + E   S      +   T   
Sbjct: 107 KIAKNETADYLLTAHH-------GDDLIENILLKFIRSGNPEEMNSLQAVGVMHGVT--- 156

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
              L  PL    K+ +    +E G+     S +++
Sbjct: 157 ---LLRPLLSSSKQEILAYDKERGISFIVDSTNKE 188


>gi|224074941|ref|XP_002304500.1| predicted protein [Populus trichocarpa]
 gi|222841932|gb|EEE79479.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 58/207 (28%), Gaps = 39/207 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+ A+SGGVDS+V A L+ +  G  +  + +                      +  RV 
Sbjct: 229 HVICALSGGVDSTVAATLVHKAIGDRLHCIFVDN--------------GLLRYKERERVA 274

Query: 81  DT----INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +T    +++     D    F +    V+ P       G+  +          F       
Sbjct: 275 ETFESDLHLPVTCVDASNEFLSKLKGVVDPEMKRKIIGKEFIS--------IFDAFAHEL 326

Query: 134 RQLGADVLAT----GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
            Q      A       Y          G  R                +    +     L 
Sbjct: 327 EQKLGKKPAYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-----VGGLPKDMKLKLI 381

Query: 190 FPLGDMKKESVRDLAREMGLDIADKSD 216
            PL  + K+ VR L R + +  A    
Sbjct: 382 EPLKLLFKDEVRQLGRILNVPDAFLKR 408


>gi|162454126|ref|YP_001616493.1| hypothetical protein sce5850 [Sorangium cellulosum 'So ce 56']
 gi|161164708|emb|CAN96013.1| conserved hypothetical protein/ATP-utilizing enzymes of the PP-loop
           superfamily [Sorangium cellulosum 'So ce 56']
          Length = 286

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 47/196 (23%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+V  SGGVDS+ V A+  ++ G   +G+T                 A  +  +A  +  
Sbjct: 30  VLVCYSGGVDSAFVLAVAHQEIGPRAVGMT-----------AVSPSLAPAEKEEATSIAR 78

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            I   H + +  E      +            P  C  C   + +        +     +
Sbjct: 79  LIGADHRLVESSEIDDPRYV---------ANNPDRCFHCKSEL-YRIAARKRSEWALAAI 128

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KKES 199
             G          D G  R  +    +                   +  PL ++   K  
Sbjct: 129 VNG------TNTDDLGDYRPGLEAAREAG-----------------VLSPLVELGFSKAD 165

Query: 200 VRDLAREMGLDIADKS 215
           VR  A  +GL I DK 
Sbjct: 166 VRAGAARVGLPIWDKP 181


>gi|58336616|ref|YP_193201.1| cell cycle [Lactobacillus acidophilus NCFM]
 gi|58253933|gb|AAV42170.1| putative cell cycle [Lactobacillus acidophilus NCFM]
          Length = 423

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 55/215 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +++VA SGG DS    ALL       K+  +++I      +  R  S+ +       
Sbjct: 20  ENKKLLVAASGGPDS---MALLDMLKDLQKKQKFELIAAHF-NHQLRSDSEEETRILKDY 75

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLL 130
                   C    +                  F + +A  E P   +    R V+++ L 
Sbjct: 76  --------CQKNEIPL----------------FVAKWAKNEQPKSGIEAAAREVRYNFLT 111

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC--RPMDLERDQS----YFLFATTQQQ 184
            + +   AD L T H+       GDD     ++   R  + E   S      +   T   
Sbjct: 112 KIAKNETADYLLTAHH-------GDDLIENILLKFIRSGNPEEMNSLQAVGVMHGVT--- 161

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
              L  PL    K+ +    +E G+     S +++
Sbjct: 162 ---LLRPLLSSSKQEILAYDKERGISFIVDSTNKE 193


>gi|189500273|ref|YP_001959743.1| argininosuccinate synthase [Chlorobium phaeobacteroides BS1]
 gi|229889860|sp|B3EJ62|ASSY_CHLPB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189495714|gb|ACE04262.1| Argininosuccinate synthase [Chlorobium phaeobacteroides BS1]
          Length = 402

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 43/207 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  ++ +A SGG+D+SV+   LK   Y  D+I VT             G+    +++ + 
Sbjct: 2   KREKIALAYSGGLDTSVMIKWLKDK-YDADIIAVT-------------GNLGQEKEIENL 47

Query: 77  RRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
            +       S     D  + F    I P   + A  E   P      R +    L+ V  
Sbjct: 48  EQKAFDTGASGFSFLDLRKEFVENYIWPALKAGALYEEVYPLATALGRPLLAKALVDVAL 107

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
                ++A G                    +  D  R +  F           +  PL +
Sbjct: 108 SEDCTMIAHG-----------------CTGKGNDQVRFEVTFASLAPHL---KVLAPLRE 147

Query: 195 MKKESVRD----LAREMGLDIADKSDS 217
            +  + R+     A + G+ ++    S
Sbjct: 148 WE-FNSREAEMAYAEKHGIPVSATKKS 173


>gi|324997628|ref|ZP_08118740.1| GMP synthase [Pseudonocardia sp. P1]
          Length = 531

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   + A+SGGVDS+V  AL++R  G  +  V     +       +              
Sbjct: 231 DGHAICALSGGVDSAVAGALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 281

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T   + +  D  +RF +A          AG T     +  R +   + + V     A
Sbjct: 282 VAAT-GATLHTVDVADRFLDA---------LAGVT---DPEEKRKIIGREFIRVFEAATA 328

Query: 139 DVLATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           +V+A  H             V   G       +           +          L  PL
Sbjct: 329 EVVADHHVGFLVQGTLYPDVVESGGGDGTATIKSHHN-------VGGLPDDIEFALVEPL 381

Query: 193 GDMKKESVRDLAREMGLD 210
             + K+ VR +  E+GL 
Sbjct: 382 RALFKDEVRMVGAELGLP 399


>gi|261346845|ref|ZP_05974489.1| argininosuccinate synthase [Providencia rustigianii DSM 4541]
 gi|282565025|gb|EFB70560.1| argininosuccinate synthase [Providencia rustigianii DSM 4541]
          Length = 406

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK   +G +V+                      +D+    +
Sbjct: 6   KKIVLAYSGGLDTSAIIPWLKENYEGCEVVAF------------VADVGQDREDLVGVEK 53

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     YV D  E F    I P          SY  G +    +     V      
Sbjct: 54  KALQSGASECYVVDLREEFIKEYIYPVLKTGALYEGSYLLGTSMARPIIAKAQV------ 107

Query: 131 SVTRQLGADVLATG 144
            +  ++GAD +A G
Sbjct: 108 EIALKVGADAVAHG 121


>gi|145250519|ref|XP_001396773.1| argininosuccinate synthase [Aspergillus niger CBS 513.88]
 gi|134082293|emb|CAK42337.1| unnamed protein product [Aspergillus niger]
          Length = 417

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 27/134 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  RV +A SGG+D+S +   L  +GYDV+                G+    +D      
Sbjct: 4   EKPRVCLAYSGGLDTSCILRWLIEEGYDVVCF-------------LGNVGQEEDWAAVEA 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
               I      + D    F   +  P           Y  G +    V     ++     
Sbjct: 51  KALKIGAKKMIIEDLRREFITELCFPAIQCNAIYEGRYLLGTSLARPVIARAQMR----- 105

Query: 131 SVTRQLGADVLATG 144
              ++ G   ++ G
Sbjct: 106 -AAQREGCQFVSHG 118


>gi|90408081|ref|ZP_01216252.1| Predicted PP-loop superfamily ATPase [Psychromonas sp. CNPT3]
 gi|90310838|gb|EAS38952.1| Predicted PP-loop superfamily ATPase [Psychromonas sp. CNPT3]
          Length = 230

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 21/154 (13%)

Query: 12  LDLDKNPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
           ++L  + + M+  VVV  SGG+DS  V      +G     +T                  
Sbjct: 1   MNLPGHTRKMKKKVVVIYSGGMDSYTVLHKALEEGLVPFALTFDY-----------GQRH 49

Query: 70  GQDVYDARRVCDTINVSHYVFDYEER--------FRNAVIVPFASSYAAGETPLPCVDCN 121
            +++  AR VC ++NV H + D              ++ I   +  Y         V   
Sbjct: 50  IKEISVARDVCLSLNVDHKIIDISSINELIGGSSLTDSSIEVSSGEYENNNMINTVVPNR 109

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155
             +  S  +     +GA+ +  G +        D
Sbjct: 110 NMILLSMAIGYAVSIGAEKVYYGAHSGDHEIYPD 143


>gi|309811460|ref|ZP_07705245.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dermacoccus sp. Ellin185]
 gi|308434586|gb|EFP58433.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dermacoccus sp. Ellin185]
          Length = 525

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDSSV AA++++  G  +  V     +       +              
Sbjct: 220 EGRAICGLSGGVDSSVAAAMVQKAIGDRLTCVF---VDHGLLRAGEAEQVKEDF------ 270

Query: 79  VCDTINVSHYVFDYEERFRNA 99
           V  T  V   V D  ++F +A
Sbjct: 271 VAAT-GVDLVVVDASQQFLDA 290


>gi|307717738|ref|YP_003873270.1| glutamine-dependent NAD(+) synthetase [Spirochaeta thermophila DSM
           6192]
 gi|306531463|gb|ADN00997.1| probable glutamine-dependent NAD(+) synthetase [Spirochaeta
           thermophila DSM 6192]
 gi|315187354|gb|EFU21110.1| NAD+ synthetase [Spirochaeta thermophila DSM 6578]
          Length = 549

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 39/186 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV + +SGG+DS++VA L     G + V    +           +GS      V+DA  +
Sbjct: 291 RVHLGLSGGIDSALVATLAVEALGPERVSAFLM-----PSQFSSEGS------VHDAMAL 339

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              + +  +          AV   F S+       LP       +         R  G  
Sbjct: 340 AGNLGIQAHTLPIR-----AVFDTFLSTLEPVFQGLPWDITEENI-------QARIRGTI 387

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++A  + +RS +        +  +          +    A            +GD+ K  
Sbjct: 388 LMAYSNKMRSLVLTT---GNKSELAVGYCTIYGDTAGALAV-----------IGDLFKTQ 433

Query: 200 VRDLAR 205
           V  LAR
Sbjct: 434 VYALAR 439


>gi|291515519|emb|CBK64729.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Alistipes shahii WAL
           8301]
          Length = 447

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 35/217 (16%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M + ++ +    + D    D R+++ +SGGVDS V+ +L  R GY V GV    +  R A
Sbjct: 1   MNLLDSFQRYIDENDLATHDDRILLTVSGGVDSMVMLSLFTRCGYRV-GVAHCNFQLRGA 59

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
              +       +             + Y      RF                T       
Sbjct: 60  ESDEDEVLVEDE-------AKKHGAAFY----NRRFETR--------AEMERTGESMEMA 100

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            R ++++   +++R+ G   +A  H+    +           + R   L           
Sbjct: 101 ARRLRYAWFDALSREHGYTAIAIAHHADDSIE-----TFFINLLRGTGLR--------GL 147

Query: 181 T--QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215
           T    Q+  +  PL    ++ + + A +  +   + S
Sbjct: 148 TGISTQVGKVIRPLLFASRKEILEYAVQNRIPFREDS 184


>gi|284053643|ref|ZP_06383853.1| exsB protein [Arthrospira platensis str. Paraca]
 gi|291569828|dbj|BAI92100.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 226

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 39/231 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS V    K DGY+   ++   Y  R   + + +    Q    A    
Sbjct: 1   MKAVILLSGGLDSSTVLYQAKADGYECYALSF-NYQQRHLRELEAAAKIAQAAGVAA--- 56

Query: 81  DTINVSHYVFDY-------EERFRNAV---IVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                 H   ++            + +        +   +   P+  V    T+  S  L
Sbjct: 57  ------HQTVEFDLKRWGGSALTDDNIDLPCDRTLAE-MSATIPITYVPARNTIFLSFAL 109

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--- 187
           +    +GAD +  G          D        CRP  +   QS F   T Q +  +   
Sbjct: 110 AYGEAIGADRIYIGVNALDYSGYPD--------CRPDYIVAMQSVFRLGTKQGREGNPIT 161

Query: 188 LRFPLGDMKKESVRDLAREMGLDIAD-------KSDSQDICFVQQGKYFDV 231
           +  PL D+KK  +  L   +G+           ++++  +C   + +    
Sbjct: 162 INTPLIDLKKTDIIQLGNSLGVPWEHTWSCYGGEAEACGVCDACRLRLAAF 212


>gi|116789987|gb|ABK25462.1| unknown [Picea sitchensis]
          Length = 512

 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 29/139 (20%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  K  +VV+A SGG+D+SV+   L+ + YD  V+  T        A   +G        
Sbjct: 109 KRGKLNKVVLAYSGGLDTSVIVPWLREN-YDCEVVCFT--------ADVGQGVGEMEGLE 159

Query: 74  YDARRV-CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVK 125
             A+      + +     D +E F    + P           Y  G +        R V 
Sbjct: 160 AKAKASGASQLVIK----DLKEEFVKEYVFPCLRAGAVYERKYLLGTSMA------RPVI 209

Query: 126 FSDLLSVTRQLGADVLATG 144
              ++ V R++GAD ++ G
Sbjct: 210 AKAMVDVAREVGADAVSHG 228


>gi|307591536|ref|YP_003900335.1| asparagine synthase [Cyanothece sp. PCC 7822]
 gi|306986390|gb|ADN18269.1| asparagine synthase [Cyanothece sp. PCC 7822]
          Length = 617

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG+DSS++AALL + G  V   +L       +            +  A+ V   + + 
Sbjct: 259 LSGGLDSSIIAALLVQAGLKVRAYSLDFGIEENSE-----------LIYAQEVAQFLKIP 307

Query: 87  HYVF 90
               
Sbjct: 308 LIKV 311


>gi|284166087|ref|YP_003404366.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284015742|gb|ADB61693.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 319

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 50/235 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRD-----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-R 77
           V+ +SGG DS V+  +L          +++G+T+           +G         DA  
Sbjct: 57  VIGLSGGKDSVVLTQILHDTFAEDPRIELVGLTIH----------EGIEGYRDKSVDACV 106

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            + D +++ H +  YEE F    + V+          E    C  C    +   L     
Sbjct: 107 ELADDLDIRHELVSYEEEFGVRMDDVVEDD------PENMAACAYCGVFRR-DLLEKYAE 159

Query: 135 QLGADVLATGHY----IRSRLYVGDDGKRRRIM------CRPMDLERDQSYFLFATTQQQ 184
           +L AD+L TGH      ++ L    +G   +I          +    DQ+ F+       
Sbjct: 160 KLEADLLLTGHNLDDEAQTALMNFLEGDVEQIAKHFDASLGALSEREDQAEFVPRAK--- 216

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239
                 PL D+ ++ V   A    L  A  ++    C      Y   ++++  G+
Sbjct: 217 ------PLRDVPEKEVALYAHINDLP-AHITE----CPHASEAYRGEIQQLLYGL 260


>gi|255955073|ref|XP_002568289.1| Pc21g12620 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590000|emb|CAP96159.1| Pc21g12620 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 672

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 60/182 (32%), Gaps = 32/182 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD- 75
           D+ V + +SGG+DSS VA +   L R G      T +L N   +      C   Q   D 
Sbjct: 265 DVPVAIYLSGGIDSSSVAGMVADLMRQG------T-KLGNESNSVPSNMKCFTVQFDEDS 317

Query: 76  -------ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                  ARR  + + V  ++    +    A+   F  +    E PLP ++    +    
Sbjct: 318 GADESAIARRTANWLGVDIHLV---KMDEEALASRFEDAVWHSEIPLPDLNGMGRL---A 371

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER-DQSYFLFATTQQQLCD 187
           L       G  V+ TG          D+        R   L   D S+      +     
Sbjct: 372 LAEAVHAQGIKVVITGE-------GSDEHFAGYDAFRADLLSEPDHSWPALQLPETDRQK 424

Query: 188 LR 189
             
Sbjct: 425 AL 426


>gi|146295593|ref|YP_001179364.1| PP-loop domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409169|gb|ABP66173.1| PP-loop domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 235

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 48/211 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--------KRDGYDVIGVTLQLYNSRKASKRK 64
           D +   +  ++ V +S G DS  +   L        K+  +DV+ +T+ +          
Sbjct: 14  DFEMIEEGDKIAVGVSAGKDSLTMLYTLSFMRRFYPKK--FDVVAITVDMGFEGM----- 66

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D    +  CD I+V  ++     + +  V               PC  C   +
Sbjct: 67  -------DFLPIKEFCDKIDVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANL 109

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +   L S  + LG + +A GH++       DD      +    +           + +  
Sbjct: 110 RRGILNSTAKSLGCNKVALGHHL-------DDVVETFFLSLFFEGR-----IYCFSPKTY 157

Query: 185 LCD----LRFPLGDMKKESVRDLAREMGLDI 211
           L         P+  +K+  +R  AR++ L +
Sbjct: 158 LDRTQITTIRPMIYLKEHDLRAAARKLELPV 188


>gi|257467723|ref|ZP_05631819.1| NAD synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062016|ref|ZP_07926501.1| NAD+ synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687692|gb|EFS24527.1| NAD+ synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 273

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 61/253 (24%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+ +SGG+DS++VA L  +  G + V+G+ +                + + V  A  V
Sbjct: 30  KVVLGLSGGIDSALVAFLAAKAFGPENVLGIMM-----------PYKTSSKESVEHAELV 78

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                +     +         I P   +Y A +   P ++  R         + R+  + 
Sbjct: 79  VKASGIRSKKIE---------ITPMVDAYFALD---PDMNSLRKGN-----KMARERMS- 120

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +   H  + +  V     +  IM              ++T          P+GD+ K  
Sbjct: 121 -ILFDHSAKEKSLVLGTSNKTEIML------------GYSTQFGDSASAVNPIGDLYKTH 167

Query: 200 VRDLAREMGLD------------IADKSDSQDICF----VQQGKYFDVVKRINA-GIALE 242
           V +L++ MG+                ++D Q++ F      +  Y  + +R+    I  E
Sbjct: 168 VWNLSKHMGVPRELIEKKPSADLWEGQTDEQELGFSYKMADEILYRLIDERMTPEEIIQE 227

Query: 243 GDIVHLNGQILGR 255
           G +     +I+ +
Sbjct: 228 GFLKDTVEKIIKK 240


>gi|228941828|ref|ZP_04104375.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974753|ref|ZP_04135319.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981348|ref|ZP_04141648.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis Bt407]
 gi|228778548|gb|EEM26815.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis Bt407]
 gi|228785156|gb|EEM33169.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818040|gb|EEM64118.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942433|gb|AEA18329.1| thiamine biosynthesis protein ThiI [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 404

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
             +V+V +SGG+DS V A L  + G  V  V   
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH 211


>gi|258511212|ref|YP_003184646.1| argininosuccinate synthase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477938|gb|ACV58257.1| argininosuccinate synthase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 420

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 44/204 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    ++   GYDVI   + +               G+D+   +   
Sbjct: 4   KLVLAYSGGLDTSVSIPWIRDHYGYDVIA--MCV-----------DVGEGKDLDATQAKA 50

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  V  Y  D + +F  + I+P   + A  E   P     +R +    L+ V  + GA
Sbjct: 51  IQVGAVKSYKIDAKAQFAESFILPALKANALYEGKYPLASALSRPLISKLLVEVAEREGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--G 193
             +A G                          +      F  +   L     +  P+   
Sbjct: 111 VAVAHG-----------------------CTGKGNDQVRFEVSIHALNPNLKVIAPVREW 147

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              ++     A+E G+ I    D+
Sbjct: 148 GFTRDEEIRYAKEHGVPIPVDLDN 171


>gi|254503440|ref|ZP_05115591.1| NAD synthase family [Labrenzia alexandrii DFL-11]
 gi|222439511|gb|EEE46190.1| NAD synthase family [Labrenzia alexandrii DFL-11]
          Length = 555

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS+V AA+     G D +   +                + + + DA     
Sbjct: 290 VVLGLSGGIDSAVCAAMAVDALGADKVHSIM----------LPFRYTSEESIKDAADCAK 339

Query: 82  TINVSHYVFDYEE 94
            + + +      E
Sbjct: 340 ALGLRYDTVPIAE 352


>gi|75760755|ref|ZP_00740776.1| Thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218899802|ref|YP_002448213.1| thiamine biosynthesis protein ThiI [Bacillus cereus G9842]
 gi|228903166|ref|ZP_04067300.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis IBL
           4222]
 gi|228910473|ref|ZP_04074288.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis IBL 200]
 gi|226703940|sp|B7IK47|THII_BACC2 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|74491755|gb|EAO54950.1| Thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218545007|gb|ACK97401.1| thiamine biosynthesis protein ThiI [Bacillus cereus G9842]
 gi|228849239|gb|EEM94078.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis IBL 200]
 gi|228856448|gb|EEN00974.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis IBL
           4222]
          Length = 404

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
             +V+V +SGG+DS V A L  + G  V  V   
Sbjct: 178 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH 211


>gi|67923187|ref|ZP_00516675.1| Asparagine synthase [Crocosphaera watsonii WH 8501]
 gi|67854973|gb|EAM50244.1| Asparagine synthase [Crocosphaera watsonii WH 8501]
          Length = 585

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG+DSS++AALL + G  V   TL           +       +   A  V   +N+ 
Sbjct: 221 LSGGLDSSIIAALLVKLGVKVRAYTL-----------EFEKDNLSEYPYAEMVAKHLNIP 269

Query: 87  HYVFDYEER 95
                    
Sbjct: 270 LVKVSITPE 278


>gi|262306083|gb|ACY45634.1| gln amidotransferase [Nicoletia meinerti]
          Length = 197

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQL 54
          + +V++ +SGG+DS+V AALL +   +  VI V +  
Sbjct: 43 NNKVLLLVSGGIDSTVCAALLHKALREDQVIAVHIDN 79


>gi|225175995|ref|ZP_03729987.1| Argininosuccinate synthase [Dethiobacter alkaliphilus AHT 1]
 gi|225168583|gb|EEG77385.1| Argininosuccinate synthase [Dethiobacter alkaliphilus AHT 1]
          Length = 401

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++++A SGG+D+S+    LK   Y+   V +    +      +      + +       
Sbjct: 2   KKIILAYSGGLDTSIAITWLKEK-YNCEVVAMA---ADVGQGEELEPLHEKAMKSGAS-- 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGE-TPLPCVDCNRTVKFSDLLSV 132
                  Y+ D  E F    + P           Y  G     P +          L+ V
Sbjct: 56  -----KLYIEDVREEFVRDFVFPMVKSGALYEEKYFLGTAIARPAIA-------KRLVEV 103

Query: 133 TRQLGADVLATG 144
             + GAD +A G
Sbjct: 104 AAKEGADAIAHG 115


>gi|329934914|ref|ZP_08284955.1| carbon-nitrogen ligase [Streptomyces griseoaurantiacus M045]
 gi|329305736|gb|EGG49592.1| carbon-nitrogen ligase [Streptomyces griseoaurantiacus M045]
          Length = 586

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G + V GV++                +     DA  + 
Sbjct: 330 VLIGLSGGIDSALVAAIACDAVGPENVYGVSM-----------PSKYSSEHSRGDAAELA 378

Query: 81  DTINVSHYVFDYEERF 96
               ++         F
Sbjct: 379 RRTGLNFRTISIAPMF 394


>gi|315636102|ref|ZP_07891358.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
 gi|315479622|gb|EFU70299.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
          Length = 386

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 13  DLDKNPKDMRV--VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCA 69
            + K+ K+ +   ++ +SGG DSS +  L K+ G   + V     +NS  A++       
Sbjct: 58  QIKKDGKNKKYDCIIGVSGGTDSSYMLYLAKQWGLRPLAVHYDNTWNSAIATEN------ 111

Query: 70  GQDVYDARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                  R+V   +++    +V D +E   + +   F  +  A       +         
Sbjct: 112 ------IRKVLTALDIDLYTHVTDNKEA--DDIFRSFFYADVAEIEASTDLALAE----- 158

Query: 128 DLLSVTRQLGADVLATGHY 146
            +     +     +  GH 
Sbjct: 159 VMYRAAWRYKVKYVLEGHS 177


>gi|187251576|ref|YP_001876058.1| exsB protein [Elusimicrobium minutum Pei191]
 gi|186971736|gb|ACC98721.1| ExsB protein [Elusimicrobium minutum Pei191]
          Length = 484

 Score = 44.8 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +      + VV  SGG+DS+V      ++GY+   +          S   G     +++ 
Sbjct: 263 ENKTSKKKAVVLFSGGLDSTVCLYWALKEGYECYAL----------SVAYGQ-KHLKEIE 311

Query: 75  DARRVCDTINVSHYVFD 91
            A+R+     V+H   +
Sbjct: 312 VAQRLAKQAGVTHKHIE 328


>gi|239996402|ref|ZP_04716926.1| putative regulator protein [Alteromonas macleodii ATCC 27126]
          Length = 218

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          VVV  SGG+DS  V     + G  V  ++   Y  R            +++  A  VC++
Sbjct: 5  VVVIYSGGMDSFTVLHKALKAGKKVHALSF-NYGQR----------HKKELDYAANVCNS 53

Query: 83 INVSHYVFDYE 93
          +NV H + D  
Sbjct: 54 LNVPHKIVDIS 64


>gi|170288158|ref|YP_001738396.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2]
 gi|226695551|sp|B1L8R5|TILS_THESQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|170175661|gb|ACB08713.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2]
          Length = 414

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 28/202 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   V+VA+SGG+DS  +  +L++         L++  +      +    + +D     R
Sbjct: 4   EGEHVLVAVSGGIDSMTLLYVLRK-----FSPLLKIKITAAHLDHRIRESSRRDREFVER 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C   N+            + V VP      +G+T        R V++  L    +++GA
Sbjct: 59  ICRQWNIPVET--------SEVDVPSLWK-DSGKTLEEIA---REVRYDFLKRTAKKVGA 106

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A  H+    L           + R           L   + ++   +R P    K+ 
Sbjct: 107 SKIALAHHKNDLLE-----TVVHRLIRGTGPL-----GLACISPKREEFIR-PFLVFKRS 155

Query: 199 SVRDLAREMGLDIADKSDSQDI 220
            + + ARE G+       + D+
Sbjct: 156 EIEEYAREKGVPYVVDETNYDV 177


>gi|256846099|ref|ZP_05551557.1| LPS biosynthesis protein WbpG [Fusobacterium sp. 3_1_36A2]
 gi|256719658|gb|EEU33213.1| LPS biosynthesis protein WbpG [Fusobacterium sp. 3_1_36A2]
          Length = 377

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVCDT 82
           ++ +SGGVDSS VA    +            +  R       +C   +    +  ++   
Sbjct: 71  LIGLSGGVDSSYVAYCAVKK-----------WGLRPLIFAVDTCWNLEVADKNIEKIIKK 119

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V  +   YE+   + ++    + + + + P      +  + F+ L +   + G   + 
Sbjct: 120 LGVDVH---YEKINHDEMMDLQLAFFKS-QVPYQDTPQDHNI-FAALYNFAAKNGFKHIL 174

Query: 143 TG 144
           TG
Sbjct: 175 TG 176


>gi|227505290|ref|ZP_03935339.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium striatum ATCC 6940]
 gi|227198123|gb|EEI78171.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 207 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 257

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F   +                 +          L         
Sbjct: 258 VAST-GAKLVTADEREAFLAKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLNDAPAGSSV 316

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +         +L  PL  + K+
Sbjct: 317 DFLVQGTLYPDVVESG--GGDGTANIKSHHN-------VGGLPDDVEFELVEPLRLLFKD 367

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 368 EVRAVGRELGLP 379


>gi|121611749|ref|YP_999556.1| asparagine synthase [Verminephrobacter eiseniae EF01-2]
 gi|121556389|gb|ABM60538.1| asparagine synthase (glutamine-hydrolyzing) [Verminephrobacter
           eiseniae EF01-2]
          Length = 584

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 27  MSGGVDSSVVA-ALL---KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +SGGVDSSV+A  LL   K+   D IG  L++       + +G      +   A RV   
Sbjct: 257 LSGGVDSSVIAHHLLPQWKQPRLDAIG--LRI-------EEQGF----SEYAYAERVATD 303

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           +N++    D        +     S     E P           F  L     Q+G  V+ 
Sbjct: 304 LNINLSALDIRP---ADIADIARSVVRHAEQPHGDFS---FFLFYLLSRRAHQMGKVVMF 357

Query: 143 TGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           TG       L    + +    M R     RD    +  +T+Q+   +  P
Sbjct: 358 TGDGPDEVMLGYRHNAQFFSGMTRARFSMRDYFDLISYSTRQERQRVMSP 407


>gi|303257762|ref|ZP_07343774.1| NAD+ synthetase [Burkholderiales bacterium 1_1_47]
 gi|331001199|ref|ZP_08324826.1| NAD+ synthase [Parasutterella excrementihominis YIT 11859]
 gi|302859732|gb|EFL82811.1| NAD+ synthetase [Burkholderiales bacterium 1_1_47]
 gi|329569131|gb|EGG50923.1| NAD+ synthase [Parasutterella excrementihominis YIT 11859]
          Length = 540

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++V  +     G D V+ V +                +     DA ++ 
Sbjct: 283 VVLGLSGGVDSALVLKIAVDAVGNDKVLAVMM-----------PSVYTSSLSRGDAAKLA 331

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
             + V       ++ +         +    G
Sbjct: 332 SRLGVRLETISIQDGYTA--FEFMLAKQFNG 360


>gi|302908920|ref|XP_003049958.1| hypothetical protein NECHADRAFT_71647 [Nectria haematococca mpVI
           77-13-4]
 gi|256730895|gb|EEU44245.1| hypothetical protein NECHADRAFT_71647 [Nectria haematococca mpVI
           77-13-4]
          Length = 414

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 32/158 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D RV +A SGG+D+SV+   L  +GY V+                G+    +D     + 
Sbjct: 4   DKRVCLAYSGGLDTSVILRYLINEGYTVVA-------------YLGNVGQDEDWAAVEKK 50

Query: 80  CDTINVSHYVF-DYEERFRNA-VIV----PFASS--YAAGETPLPCVDCNRTVKFSDLLS 131
              +     V  D ++ F    V             Y  G +    V          L+ 
Sbjct: 51  ALALGAERMVIDDLQQEFLEELVFRGIQCNAIYEDRYLLGTSLARPVLA------RALVR 104

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
             ++    +L+ G         G+D  R  +  R +D 
Sbjct: 105 TAQKYNCKILSHG-----CTGKGNDQVRFELAWRALDP 137


>gi|84489963|ref|YP_448195.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|110816234|sp|Q2NF51|QUEC_METST RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|84373282|gb|ABC57552.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 226

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 14/76 (18%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           PK + V   +SGG+DS+V  ++   D YD+  +T             G     Q++  A
Sbjct: 2  KPKAITV---LSGGLDSTVATSIYAND-YDITAITF----------NYGQQSIKQELKHA 47

Query: 77 RRVCDTINVSHYVFDY 92
          + +C+ +++ H V D 
Sbjct: 48 KMICEKLDMKHIVIDL 63


>gi|315427307|dbj|BAJ48918.1| GMP synthase (glutamine-hydrolysing) [Candidatus Caldiarchaeum
           subterraneum]
 gi|315428189|dbj|BAJ49773.1| GMP synthase (glutamine-hydrolysing) [Candidatus Caldiarchaeum
           subterraneum]
          Length = 510

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             RV+ A+SGG+DS+V AA++ +     +G  L+         RK      + +   R++
Sbjct: 212 PGRVLCAVSGGIDSTVTAAIVSKA----VGKRLKCLFVNHGLLRKNE--PEKVLETLRKI 265

Query: 80  CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               N+ +   D  ERF N    V+ P               +  R +   +  ++  ++
Sbjct: 266 VGEDNIIY--IDASERFLNRLRGVVDP---------------EEKRRIIGHEFAAIFEEV 308

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                   H  +  LY       + +    +         +    Q     L  PL ++ 
Sbjct: 309 SKAYGPFTHLAQGTLYPDVVESGKSVGGSAVIKTHHN---VGGMPQNFGMKLVEPLRELY 365

Query: 197 KESVRDLAREMGLD 210
           K+ VR LA  MGL 
Sbjct: 366 KDEVRQLAEMMGLP 379


>gi|308476116|ref|XP_003100275.1| CRE-ASNS-2 protein [Caenorhabditis remanei]
 gi|308265799|gb|EFP09752.1| CRE-ASNS-2 protein [Caenorhabditis remanei]
          Length = 571

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 36/183 (19%)

Query: 19  KDMRVVVAMSGGVD----SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D  + V +SGG+D    SS+ +  +KR G  V             S   G      DV 
Sbjct: 228 SDAPIGVLLSGGLDSSLVSSIASREMKRRGMTVH------------SFSIGVDHNSPDVI 275

Query: 75  DARRVCDTINVSHYVFDYEERF-RNAVIVPF------ASSYA----AGETPLPCVDCNRT 123
            AR+V   I  +H+ F +  +F     I           SY        TP+     +  
Sbjct: 276 AARKVAKFIGTTHHEFYFSIQFYFQEGIKNLRKLIWHLESYDVTSIRASTPM--YFLSEE 333

Query: 124 V-KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFL 177
           + K    + V    GAD +  G+         +D ++        +     L  D+S   
Sbjct: 334 IRKMGIKV-VLSGEGADEIFGGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMA 392

Query: 178 FAT 180
            + 
Sbjct: 393 HSV 395


>gi|297544908|ref|YP_003677210.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842683|gb|ADH61199.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 380

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  V +SGG+DS V   ++ + G ++  V          S    S  A   V D  +V
Sbjct: 172 NGKATVLLSGGIDSPVATWMMMKRGVEIEAVYFH-------SPPYTSERAKDKVVDLCKV 224

Query: 80  CDTIN--VSHYVFDYEER 95
                  +  +V  + + 
Sbjct: 225 LSQYGQKIKLHVVHFTDL 242


>gi|30249848|ref|NP_841918.1| carbon-nitrogen hydrolase:NAD+ synthase [Nitrosomonas europaea ATCC
           19718]
 gi|30180885|emb|CAD85807.1| Carbon-nitrogen hydrolase:NAD+ synthase [Nitrosomonas europaea ATCC
           19718]
          Length = 535

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           +  A RL   D     +   V++ +SGGVDS++V A+     G + V  V +        
Sbjct: 258 IYTALRLGLHDFITKNRLPGVLIGLSGGVDSALVLAIAVDALGAERVRTVMM-------- 309

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSH 87
                   A   + DA+ + D + V H
Sbjct: 310 ---PSPYTADISIQDAQTMADNLGVRH 333


>gi|23016162|ref|ZP_00055921.1| COG0137: Argininosuccinate synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 490

 Score = 44.8 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+   Y    VT                  G+++  AR   
Sbjct: 6   KKVVLAYSGGLDTSIILRWLQDQ-YSCEVVTF-----------TADLGQGEELEPARAKA 53

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
             + +        D  E F    + P   +       Y  G +    +   R +      
Sbjct: 54  RLMGIKEENIFIDDLREEFVKDFVFPMFRANALYEGVYLLGTSIARPLISKRQI------ 107

Query: 131 SVTRQLGADVLATG 144
            +   +GAD ++ G
Sbjct: 108 EIANLVGADAVSHG 121


>gi|325973331|ref|YP_004250395.1| GMP synthase [Mycoplasma suis str. Illinois]
 gi|325989766|ref|YP_004249465.1| GMP synthase (glutamine-hydrolyzing) [Mycoplasma suis KI3806]
 gi|323574851|emb|CBZ40511.1| GMP synthase (Glutamine-hydrolyzing) [Mycoplasma suis]
 gi|323651933|gb|ADX98015.1| GMP synthase [Mycoplasma suis str. Illinois]
          Length = 538

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 26/195 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDAR 77
           KD R++VA+SGG+DSSV+   L           + +  N        G     ++    +
Sbjct: 236 KDARILVALSGGLDSSVLIHFLAE---------MTIDRNIYPVYISTGLVPKEKEEKVIK 286

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
              +  +      ++        I     S  + E     +       F ++     +  
Sbjct: 287 YFANKFS------NFRVVSWEDSIFNDLKSVTSPEEKRKIIAQKFKKTFDEIYEQEVKRN 340

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
              LA G      +  G    +   +     +++ +++S   +         +  PL D+
Sbjct: 341 ITHLAQGTIYSDVIESGKLSSKYSKIKTHHNVEMVKNESSLPY--------KVVEPLSDL 392

Query: 196 KKESVRDLAREMGLD 210
            K+ VR L   + L 
Sbjct: 393 FKDQVRMLGARLNLP 407


>gi|312128221|ref|YP_003993095.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778240|gb|ADQ07726.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 456

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV---VAALLKRDGY--DVIGVTLQLY 55
           M + E  + N        K  +V++  SGGVDS V       LK + Y  D+    L   
Sbjct: 1   MELLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCICRLKDE-YSLDITVAHLNHM 59

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGET 113
              +A           D      +C   N+       D  +  +        S   AG +
Sbjct: 60  LRPEADD---------DEKFVIEMCKRYNIKCITRKVDVAKLKKEK----GLSEEEAGRS 106

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                      ++S    + ++L  D +  GH
Sbjct: 107 A----------RYSFFYEIAQELNIDRILLGH 128


>gi|257468397|ref|ZP_05632491.1| PP-loop domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062670|ref|ZP_07927155.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688346|gb|EFS25181.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 253

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 28/131 (21%)

Query: 22  RVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+ V +SGG DS         +K+         +   +                     +
Sbjct: 43  RIAVGVSGGKDSLTTLNALVRIKK---------IANIDFEIIPIHIHPNIDKASFEVIEK 93

Query: 79  VCDTINVSHYV--FDYEE-RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            C+ + +   V   +  +  F               E   PC  C R ++   L  + ++
Sbjct: 94  YCEKLGLKLQVEHTNLSDMLFGEK------------EVKNPCFLCGR-IRRGILYRMMKE 140

Query: 136 LGADVLATGHY 146
            G + LA GH+
Sbjct: 141 QGVNKLALGHH 151


>gi|218129888|ref|ZP_03458692.1| hypothetical protein BACEGG_01470 [Bacteroides eggerthii DSM 20697]
 gi|317476891|ref|ZP_07936134.1| hypothetical protein HMPREF1016_03118 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987998|gb|EEC54323.1| hypothetical protein BACEGG_01470 [Bacteroides eggerthii DSM 20697]
 gi|316907066|gb|EFV28777.1| hypothetical protein HMPREF1016_03118 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 251

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 33/136 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  R+++ +SGG DS  +  LL R        + VI V   ++                 
Sbjct: 33  EGDRILIGLSGGKDSLALVELLARRSRILKPRFSVIAVHVVMKNI------------PYQ 80

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            DV   R   ++  +          +       F +S    ++P      NR      L 
Sbjct: 81  SDVDYLRNYTESCGIPFV------LYETE----FDASTDTRKSPCFLCSWNRR---KALF 127

Query: 131 SVTRQLGADVLATGHY 146
           +V ++   + +A GH+
Sbjct: 128 TVAKEQKCNKIALGHH 143


>gi|302879202|ref|YP_003847766.1| argininosuccinate synthase [Gallionella capsiferriformans ES-2]
 gi|302581991|gb|ADL56002.1| argininosuccinate synthase [Gallionella capsiferriformans ES-2]
          Length = 407

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 5   KKAVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADVGQGEELEPARAKA 52

Query: 81  DTINV---SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +   + Y+ D  E F    + P           Y  G +    +   R      L+
Sbjct: 53  LKMGITPENIYIDDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LI 106

Query: 131 SVTRQLGADVLATG 144
            +    GA  ++ G
Sbjct: 107 EIASMTGAQAISHG 120


>gi|182419059|ref|ZP_02950313.1| argininosuccinate synthase [Clostridium butyricum 5521]
 gi|237669260|ref|ZP_04529242.1| argininosuccinate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377014|gb|EDT74584.1| argininosuccinate synthase [Clostridium butyricum 5521]
 gi|237655147|gb|EEP52705.1| argininosuccinate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 407

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +VV+A SGG+D+S++   LK   G +VI V           K +      + +    
Sbjct: 3   KYNKVVLAYSGGLDTSIIIPWLKETYGCEVIAVC-----GNVGQKDELDGLEEKAIKTGA 57

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDL 129
                     Y+ D  + F +  I P           Y  G +   P +          L
Sbjct: 58  S-------KLYIEDLTQEFVDDYIFPTIQAGAVYEGKYLLGTSFARPLIG-------KRL 103

Query: 130 LSVTRQLGADVLATG 144
           + + ++ GAD +  G
Sbjct: 104 VEIAQKEGADAICHG 118


>gi|78188567|ref|YP_378905.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlorobium chlorochromatii CaD3]
 gi|91206800|sp|Q3AT13|GUAA_CHLCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78170766|gb|ABB27862.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium chlorochromatii
           CaD3]
          Length = 511

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 36/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +   +  V+  +SGGVDS+V A L+ +  G  +  V +     RK    K       
Sbjct: 211 EIRRKAGNNTVICGISGGVDSTVAAVLVSKAIGKQLHCVFVDNGLLRKNEAEKVMHFLKP 270

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                      + +   + D  + F      V  P       G T +   +    +    
Sbjct: 271 -----------LGLHITLADSSDLFLKRLKGVASPEKKRKIIGRTFIQVFE--EQIHHEK 317

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            L                I S    G     +                +    ++    L
Sbjct: 318 FL-------VQGTLYPDVIESISVKGPSETIKSHHN------------VGGLPKRMKLKL 358

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 359 IEPLRELFKDEVRAVGRELGIP 380


>gi|114289|sp|P13256|ASSY_METVA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|150046|gb|AAA88322.1| argininosuccinate synthetase [Methanococcus vannielii]
          Length = 397

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y V+ V                     D+ +    
Sbjct: 4   KIAVLAYSGGLDTSCCLKLLEDKYNYKVVSV------------AVDVGQPEDDLKEPEEK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
              + V  HY  D +E F    I     + A  E  PL        +       + +++G
Sbjct: 52  AKKLGVLKHYTIDAKEEFAVDYIFRAIKANALYEGYPLSTALARPLIAIKI-AELAKEIG 110

Query: 138 ADVLATG 144
           AD ++ G
Sbjct: 111 ADAISHG 117


>gi|226945709|ref|YP_002800782.1| ExsB protein [Azotobacter vinelandii DJ]
 gi|259551494|sp|C1DRE9|QUEC_AZOVD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|226720636|gb|ACO79807.1| ExsB protein [Azotobacter vinelandii DJ]
          Length = 224

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + + V+ +SGG+DS+ VAAL K +GY               S   G     + +  A RV
Sbjct: 3  EKKAVILLSGGLDSATVAALAKTEGYAC----------YSMSFDYGQRHRAE-LRAAERV 51

Query: 80 CDTIN-VSHYV 89
             +  V H V
Sbjct: 52 ARQLGMVEHKV 62


>gi|312134199|ref|YP_004001537.1| exsb protein [Caldicellulosiruptor owensensis OL]
 gi|311774250|gb|ADQ03737.1| exsB protein [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
          +SGG+DS+ +   +K  GY+V  ++  LY               +++  A++ C  +++ 
Sbjct: 3  LSGGMDSTTLLYDVKNQGYEVFAISF-LY----------GQKHSKELEFAKKTCSLLSIP 51

Query: 87 HYVFDYE 93
          H + D  
Sbjct: 52 HRIVDIS 58


>gi|193215202|ref|YP_001996401.1| exsB protein [Chloroherpeton thalassium ATCC 35110]
 gi|254764322|sp|B3QS09|QUEC_CHLT3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|193088679|gb|ACF13954.1| exsB protein [Chloroherpeton thalassium ATCC 35110]
          Length = 226

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR VV +SGG+DS V  A+    GY++  + +            G     +++   +++C
Sbjct: 1  MRAVVLLSGGMDSLVTTAIAAHLGYELAALHI----------NYGQRTEKRELVAFQKIC 50

Query: 81 DTINVS 86
          D   + 
Sbjct: 51 DFYRIE 56


>gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
 gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
          Length = 475

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             K  R+V A+SGG DS  +  LL     +     VI   +  +  RK + R+       
Sbjct: 22  WSKGDRIVAAVSGGPDSMALLHLLWQAARQEQ-LTVIAAHV-NHGFRKDASRQ------- 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +    R+  + + V   + +               +Y   ET +      R  +++ L  
Sbjct: 73  EAEVVRQYAEKLGVPFEMIEL-----------DMPAYIE-ETGINAQSAAREKRYAFLHE 120

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--LR 189
              + GA  +A  H+         D +   ++ R +      +       +++  +  L 
Sbjct: 121 TAVKYGASAIALAHHA--------DDQAETVLMRVI-RGAGLTGLAGMAPKRKEKNVELI 171

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL  M K  +     E  + 
Sbjct: 172 RPLLRMNKSDIVRYCSERDVP 192


>gi|71278544|ref|YP_269637.1| exsB protein [Colwellia psychrerythraea 34H]
 gi|110816204|sp|Q47ZY2|QUEC2_COLP3 RecName: Full=7-cyano-7-deazaguanine synthase 2; AltName:
          Full=7-cyano-7-carbaguanine synthase 2; AltName:
          Full=PreQ(0) synthase 2; AltName: Full=Queuosine
          biosynthesis protein queC 2
 gi|71144284|gb|AAZ24757.1| exsB protein [Colwellia psychrerythraea 34H]
          Length = 219

 Score = 44.8 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++VV  SGG+DS        ++G+DV  +          S   G     +++  A+ VC
Sbjct: 2  KKLVVIYSGGMDSFTALNKAVKEGFDVYAL----------SFDYGQ-KHNKELIYAQNVC 50

Query: 81 DTINVSHYVFD 91
          + +NV H + D
Sbjct: 51 NELNVPHKILD 61


>gi|216263555|ref|ZP_03435550.1| NAD+ synthetase [Borrelia afzelii ACA-1]
 gi|215980399|gb|EEC21220.1| NAD+ synthetase [Borrelia afzelii ACA-1]
          Length = 512

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G + V+G+++           +GS      + DA+ +
Sbjct: 259 KVHLGLSGGIDSALVACLACFALGAENVVGISM-----PSKFSSEGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFR 97
              +         ++ F 
Sbjct: 308 SRKLGFKLIEMPIKDLFE 325


>gi|167627656|ref|YP_001678156.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189035967|sp|B0TYH9|TILS_FRAP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|167597657|gb|ABZ87655.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 400

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 45/220 (20%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKAS 61
           + T++ S  L+ +P    +++  SGGVDSSV   LL   K      I + +  +N    +
Sbjct: 4   DKTQIISQILNHSPS--HIIIGYSGGVDSSV---LLDITKDLDIPTIAIYI-NHNIHPDA 57

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
            +    C        + +C+  N+               I         GE+        
Sbjct: 58  LKWQLHC--------QTICNNANIDF-------------IAHSLDQAPKGESFE---AWA 93

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
              +    + +  Q  + +L  GH++        D +    + + +      +       
Sbjct: 94  SKQRMDFFIEIMSQYSSPILLLGHHL--------DDQAETFLIQAI-RGSGLAGLASMPY 144

Query: 182 QQQLCD--LRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
            +QL    +  PL D  K+ ++D A +  +      DS +
Sbjct: 145 YKQLNHGAVLRPLLDYTKKDIQDYASQNKI-NHIYDDSNE 183


>gi|152993337|ref|YP_001359058.1| hypothetical protein SUN_1754 [Sulfurovum sp. NBC37-1]
 gi|151425198|dbj|BAF72701.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 265

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 36/199 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  RV+V +SGG DS    AL       V G+  +Q            +C     + D  
Sbjct: 34  EGDRVLVGLSGGKDS---LAL-------VHGLKHIQ--RHAPFRFEFEACTVKYGMPDEH 81

Query: 78  -----RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                + C+   + H V+D        +     ++     +   C   +R ++   L + 
Sbjct: 82  YDFLSKHCEEYGIKHTVYD------TNIFEISHNTIRENSSF--CSYFSR-MRRGALYTF 132

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             Q G + +A GH+    +             R +         ++ T +     L  PL
Sbjct: 133 AEQGGFNKVALGHHFDDTVESFFMNMFYNGTMRALAP-------IYKTGRGF--HLIRPL 183

Query: 193 GDMKKESVRDLAREMGLDI 211
              ++  +R  A +  L +
Sbjct: 184 IQARESQLRAFADDNNLQV 202


>gi|111115348|ref|YP_709966.1| NH(3)-dependent NAD+ synthetase [Borrelia afzelii PKo]
 gi|110890622|gb|ABH01790.1| NH(3)-dependent NAD+ synthetase [Borrelia afzelii PKo]
          Length = 512

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G + V+G+++           +GS      + DA+ +
Sbjct: 259 KVHLGLSGGIDSALVACLACFALGAENVVGISM-----PSKFSSEGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFR 97
              +         ++ F 
Sbjct: 308 SRKLGFKLIEMPIKDLFE 325


>gi|312137453|ref|YP_004004790.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311225172|gb|ADP78028.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 297

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 44/224 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           + VA+SGG DS +    LK    +   +  +L  +               +   R+    
Sbjct: 43  ISVALSGGKDSLLTLYALKNLQNE---INFKL--NAIFIDEGIKNYRKNALKYLRKHVKK 97

Query: 83  INVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + V      ++E F    + +   F +         PC+ C    ++  L     ++GA 
Sbjct: 98  LEVELIKKSFKEEFGFKVDEIKDYFDT---------PCIPCGIFRRY-LLNKTAYEVGAS 147

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL-------RFPL 192
            LATGH +        D + +  +   M L R  ++  +    + L  +         PL
Sbjct: 148 KLATGHNL--------DDEIQSFL---MSLVRGDTFRFYKFGPK-LDRIHPKLIPRIKPL 195

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236
            ++ ++ V D   +  +++       + C     KY    K +N
Sbjct: 196 WEVSEKEVIDWVVKNDIEVQ-----MERC--PYSKYSFRFKLMN 232


>gi|254463160|ref|ZP_05076576.1| glutamine-dependent NAD(+) synthetase [Rhodobacterales bacterium
           HTCC2083]
 gi|206679749|gb|EDZ44236.1| glutamine-dependent NAD(+) synthetase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 557

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V++ MSGG+DS++VA +      G +V  V L                +   + DA+ 
Sbjct: 290 KKVLLGMSGGIDSALVATIAVDALGGENVRCVML-----------PSEYTSQGSLDDAKD 338

Query: 79  VCDTINVSHYVFDYEE 94
             + I   +      E
Sbjct: 339 CAERIGAEYNFVPISE 354


>gi|45357636|ref|NP_987193.1| argininosuccinate synthase [Methanococcus maripaludis S2]
 gi|47605395|sp|P61527|ASSY_METMP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|45047196|emb|CAF29629.1| Argininosuccinate synthase [Methanococcus maripaludis S2]
          Length = 397

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 35/199 (17%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y VI V                     D+ +    
Sbjct: 4   KIAVLAYSGGLDTSCCLKLLEDKYDYKVISV------------AVDVGQPEDDLKEPEEK 51

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
                V  HY  D +E F    I     + A  E  PL        +       + +++G
Sbjct: 52  AKKFGVLKHYTIDAKEEFAKDYIFRAIKANALYEGYPLSTALARPLIAIKI-AELAQEVG 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A  ++ G         G+D  R   + R    E +    +       L            
Sbjct: 111 ASAISHG-----CTGKGNDQFRFESVMRAKTPEIE---IVAPIRDLNLTRT--------- 153

Query: 198 ESVRDLAREMGLDIADKSD 216
           E +   A+E G+ +    +
Sbjct: 154 EEI-AYAKEKGIPVPVDLE 171


>gi|46202015|ref|ZP_00208351.1| COG0367: Asparagine synthase (glutamine-hydrolyzing)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 587

 Score = 44.8 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 27  MSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +SGGVDSS+V A++   R+G D+   ++  +   KA    G          A  V     
Sbjct: 226 LSGGVDSSLVVAMMARFREGRDIHAFSIGFH--EKAFDESGY---------AESVARAWG 274

Query: 85  VSHYVFDYEERFRNAVIVPFA 105
           V H+V  + +    +VI    
Sbjct: 275 VDHHVTRFSDAEMFSVIDEIL 295


>gi|325090772|gb|EGC44082.1| GMP synthase [Ajellomyces capsulatus H88]
          Length = 903

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 28/130 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L++      IG      L ++      + +          
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMQEA----IGNRFHAVLVDNGVLRLNEAAIVKET----- 284

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVKFSDLLSV 132
             +   + ++  V D  ERF              G T  P     V  N  +        
Sbjct: 285 --LTKHLGINLTVVDASERFLGK---------LKGITDDPEKKRKVIGNTFI--EVFQEE 331

Query: 133 TRQLGADVLA 142
            +++    +A
Sbjct: 332 AKKIEQVRIA 341


>gi|240274432|gb|EER37948.1| GMP synthase [Ajellomyces capsulatus H143]
          Length = 883

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 28/130 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L++      IG      L ++      + +          
Sbjct: 221 EKGQVIGAVSGGVDSTVAAKLMQEA----IGNRFHAVLVDNGVLRLNEAAIVKET----- 271

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVKFSDLLSV 132
             +   + ++  V D  ERF              G T  P     V  N  +        
Sbjct: 272 --LTKHLGINLTVVDASERFLGK---------LKGITDDPEKKRKVIGNTFI--EVFQEE 318

Query: 133 TRQLGADVLA 142
            +++    +A
Sbjct: 319 AKKIEQVRIA 328


>gi|228967746|ref|ZP_04128763.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791968|gb|EEM39553.1| thiamine biosynthesis protein thiI [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 234

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
             +V+V +SGG+DS V A L  + G  V  V   
Sbjct: 177 GGKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFH 210


>gi|225561330|gb|EEH09610.1| GMP synthase [Ajellomyces capsulatus G186AR]
          Length = 896

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 28/130 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L++      IG      L ++      + +          
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMQEA----IGNRFHAVLVDNGVLRLNEAAIVKET----- 284

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVKFSDLLSV 132
             +   + ++  V D  ERF              G T  P     V  N  +        
Sbjct: 285 --LTKHLGINLTVVDASERFLGK---------LKGITDDPEKKRKVIGNTFI--EVFQEE 331

Query: 133 TRQLGADVLA 142
            +++    +A
Sbjct: 332 AKKIEQVRIA 341


>gi|218289856|ref|ZP_03494046.1| Argininosuccinate synthase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239996|gb|EED07182.1| Argininosuccinate synthase [Alicyclobacillus acidocaldarius LAA1]
          Length = 420

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 44/204 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+SV    ++   GYDVI   + +               G+D+   +   
Sbjct: 4   KLVLAYSGGLDTSVSIPWIRDHYGYDVIA--MCV-----------DVGEGKDLDATQAKA 50

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
             +  V  Y  D + +F  + I+P   + A  E   P     +R +    L+ V  + GA
Sbjct: 51  IQVGAVKSYKIDAKAQFAESFILPALKANALYEGKYPLASALSRPLISKLLVEVAEREGA 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--G 193
             +A G                          +      F  +   L     +  P+   
Sbjct: 111 VAVAHG-----------------------CTGKGNDQVRFEVSIHALNPNLKVIAPVREW 147

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
              ++     A+E G+ I    D+
Sbjct: 148 GFTRDEEIRYAKEHGVPIPVDLDN 171


>gi|21673940|ref|NP_662005.1| argininosuccinate synthase [Chlorobium tepidum TLS]
 gi|30172875|sp|Q8KDE0|ASSY_CHLTE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|21647081|gb|AAM72347.1| argininosuccinate synthase [Chlorobium tepidum TLS]
          Length = 401

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ VA SGG+D+SV+   LK   +G +++ VT  L    +    +            + +
Sbjct: 5   KIAVAYSGGLDTSVMIKWLKDKYEGAEIVAVTGNLGQKMEVDNLEQ-----------KAI 53

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                 S +  D  + F    I     + A  E   P      R +    L+ V    G 
Sbjct: 54  ATGAK-SFHFVDLRKTFVEEYIWKALKAGALYEDVYPLATALGRPLLAKALVDVALAEGC 112

Query: 139 DVLATG 144
            +L  G
Sbjct: 113 TMLTHG 118


>gi|194378858|dbj|BAG63594.1| unnamed protein product [Homo sapiens]
          Length = 478

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 167 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 215

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 216 ARKVADHIGSEHYEVLFNSE 235


>gi|298499099|ref|ZP_07008906.1| GMP synthase [Vibrio cholerae MAK 757]
 gi|297543432|gb|EFH79482.1| GMP synthase [Vibrio cholerae MAK 757]
          Length = 374

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 21/83 (25%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDV 73
           +  V++ +SGGVDSSVVA L+ R  G  +  V      L+L    +  +  G        
Sbjct: 219 NDEVILGLSGGVDSSVVAMLVHRAIGSKLTCVFVDNGLLRLNEGEQVMEMFG-------- 270

Query: 74  YDARRVCDTINVSHYVFDYEERF 96
                  D   ++    D EERF
Sbjct: 271 -------DKFGLNIIKVDAEERF 286


>gi|296010850|ref|NP_001171547.1| asparagine synthetase [glutamine-hydrolyzing] isoform c [Homo
           sapiens]
 gi|296010852|ref|NP_001171548.1| asparagine synthetase [glutamine-hydrolyzing] isoform c [Homo
           sapiens]
          Length = 478

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 167 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 215

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 216 ARKVADHIGSEHYEVLFNSE 235


>gi|300770964|ref|ZP_07080841.1| NAD synthetase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762237|gb|EFK59056.1| NAD synthetase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 546

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  + +SGG+DS+VVAAL     G + V+ + +                +   + DA  
Sbjct: 290 KKATLGLSGGLDSAVVAALACEAIGAENVLAILM-----------PSVYSSDHSLKDALD 338

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
           +       H++   ++           S    G  P
Sbjct: 339 LVKNTGCQHHIIPIKDV--AQAFEGTLSKVFEGLQP 372


>gi|255076007|ref|XP_002501678.1| predicted protein [Micromonas sp. RCC299]
 gi|226516942|gb|ACO62936.1| predicted protein [Micromonas sp. RCC299]
          Length = 780

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 28/130 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD----G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V +++SGGVDS V+A +LK      G +DV+ + +                +G++    R
Sbjct: 298 VAISLSGGVDSMVLATILKAAAPSFGDFDVVAMHI---------DYANRPESGKEADFVR 348

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
             C+   +              V+    +    G TP    +  +R +++       +  
Sbjct: 349 GWCERKGI------------VCVVRR-IAEVKRGVTPREQYEAESRAIRYGLYKECAKTH 395

Query: 137 GADVLATGHY 146
           G   +  GH+
Sbjct: 396 GFPAVFVGHH 405


>gi|114614693|ref|XP_001171149.1| PREDICTED: asparagine synthetase isoform 1 [Pan troglodytes]
 gi|221045836|dbj|BAH14595.1| unnamed protein product [Homo sapiens]
          Length = 478

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 167 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 215

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 216 ARKVADHIGSEHYEVLFNSE 235


>gi|114614691|ref|XP_001171197.1| PREDICTED: asparagine synthetase isoform 2 [Pan troglodytes]
          Length = 503

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 192 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 240

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 241 ARKVADHIGSEHYEVLFNSE 260


>gi|50305119|ref|XP_452518.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74607012|sp|Q6CU71|GUAA_KLULA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49641651|emb|CAH01369.1| KLLA0C07172p [Kluyveromyces lactis]
          Length = 524

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 39/198 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV--- 79
           V+ A+SGGVDS+V A L+ R     IG                       + +A  V   
Sbjct: 225 VIGAVSGGVDSTVAAKLMDRA----IG---------DRFHAIMVDNGVLRLNEAATVKKT 271

Query: 80  -CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV---DCNRTVKFSDLLSV 132
             + + ++  V D  + F +    V  P       G T +            K    +  
Sbjct: 272 LGEGLGINLTVVDASDEFLDKLKGVTDPEKKRKIIGNTFIHVFEREAAKIQPKNGKEIEF 331

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             Q           I S  + G     +                +    +     L  PL
Sbjct: 332 LLQG----TLYPDVIESISFKGPSQTIKTHHN------------VGGLLENMKLKLIEPL 375

Query: 193 GDMKKESVRDLAREMGLD 210
            ++ K+ VR+L   +G+ 
Sbjct: 376 RELFKDEVRELGELLGIS 393


>gi|54696530|gb|AAV38637.1| asparagine synthetase [synthetic construct]
 gi|61367932|gb|AAX43068.1| asparagine synthetase [synthetic construct]
          Length = 562

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 299 ARKVADHIGSEHYEVLFNSE 318


>gi|322513968|ref|ZP_08067043.1| thiamine biosynthesis protein ThiI [Actinobacillus ureae ATCC
           25976]
 gi|322120194|gb|EFX92152.1| thiamine biosynthesis protein ThiI [Actinobacillus ureae ATCC
           25976]
          Length = 482

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGHF 367


>gi|320167761|gb|EFW44660.1| asparagine synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 552

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 37/182 (20%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTL-QLYNSRKASKRKGSCCAGQ------------ 71
           V +SGG+DSS+VAA+  R         L QL N+  A+         +            
Sbjct: 230 VLLSGGLDSSLVAAIASR--------HLEQLANNPPANDESHVNWWPRLHSFAIGLKNAP 281

Query: 72  DVYDARRVCDTINVSHYVFDYEERF----RNAVIVPFASSYA----AGETPLPCVDCNRT 123
           D+  AR V   +N  H+ F +  +        V+     +Y        TP+     +R 
Sbjct: 282 DLEAARVVAKHLNTVHHEFHFTIQDGHDALRDVVNH-LETYDVTTIRASTPM--YLLSRR 338

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLF 178
           +K + +  V    G+D +  G+    +     D  +        +     L  ++S   +
Sbjct: 339 IKATGVKMVLSGEGSDEIFGGYLYFHKAPSAADLHKETIQRVGNLHLSDCLRANKSTMAW 398

Query: 179 AT 180
             
Sbjct: 399 GV 400


>gi|307257127|ref|ZP_07538899.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864289|gb|EFM96200.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 482

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGHF 367


>gi|260438547|ref|ZP_05792363.1| argininosuccinate synthase [Butyrivibrio crossotus DSM 2876]
 gi|292809136|gb|EFF68341.1| argininosuccinate synthase [Butyrivibrio crossotus DSM 2876]
          Length = 407

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK   GYDVI       N  + S+ +G     +       
Sbjct: 4   KVVLAYSGGLD--TTAIIPWLKETYGYDVICC---CVNVGQESELEGLDERAKYSG---- 54

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
             + +    Y+ D  +   +  I+P   + A  E          R +    L+ V R+ G
Sbjct: 55  -AEKL----YIEDVVDELCDEYIMPTVKANAVYENKYLLGTSFARPLIAKKLVEVARKEG 109

Query: 138 ADVLATG 144
           A  +  G
Sbjct: 110 AVAICHG 116


>gi|257465621|ref|ZP_05629992.1| thiamine biosynthesis protein ThiI [Actinobacillus minor 202]
 gi|257451281|gb|EEV25324.1| thiamine biosynthesis protein ThiI [Actinobacillus minor 202]
          Length = 483

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSSSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  I+   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIIEEEGNF 367


>gi|258563424|ref|XP_002582457.1| argininosuccinate synthase [Uncinocarpus reesii 1704]
 gi|237907964|gb|EEP82365.1| argininosuccinate synthase [Uncinocarpus reesii 1704]
          Length = 91

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          +V++A SGG+D+S + A L   G++V+                      +D  +A +   
Sbjct: 6  KVLLAYSGGLDTSCILAWLIEQGHEVVCF-------------LADVGQAEDFKEAEKKAL 52

Query: 82 TINV-SHYVFDYEERFRNA 99
           I      V D +  F   
Sbjct: 53 AIGAKKLVVEDLKREFVED 71


>gi|217076428|ref|YP_002334144.1| NAD+ synthetase [Thermosipho africanus TCF52B]
 gi|217036281|gb|ACJ74803.1| NAD+ synthetase [Thermosipho africanus TCF52B]
          Length = 290

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 37/206 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+VV ALL +  +D         +  K             V DA  VC   
Sbjct: 25  VLGVSGGLDSAVVLALLVKA-FD--------RDKIKCFILPERDSPKDSVKDAVFVCKYF 75

Query: 84  NVSHYVFDYEERFRN---------------AVIVPFASS-YAAGETP-LPCVDCNRTVKF 126
            V + + +  +  R                 V   FA   +   +    P       ++ 
Sbjct: 76  GVEYEIKNITKILRALGIYKYYPPAFFVPWKVKENFAKKRWQKYKEKGNPFEFDIEGIED 135

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
            + L      G       H +R      +  +R       +    +++ FL     +   
Sbjct: 136 EEFLK-----GISYYRAKHRVRMVYLYKEAERRNY----AVVGTTNKTEFLTGLYVKWGD 186

Query: 187 DL--RFPLGDMKKESVRDLAREMGLD 210
           D     P+  + K  V +LA+E+ + 
Sbjct: 187 DSTDIEPILHLYKTQVYELAKELNVP 212


>gi|190893996|ref|YP_001984290.1| probable succinoglycan biosynthesis transcriptional regulator
           protein [Rhizobium etli CIAT 652]
 gi|190699657|gb|ACE93740.1| probable succinoglycan biosynthesis transcriptional regulator
           protein [Rhizobium etli CIAT 652]
          Length = 191

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 38/191 (19%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV- 85
           MSGG+DS++VA L   +G  V  + +  Y  R   +   +C               + + 
Sbjct: 1   MSGGLDSTLVAYLAIEEGLKVHPLFV-NYGQRAIDRELAACKNSMM---------KLGIL 50

Query: 86  -SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
               + D    +   +         +G T       N+ +     +      G ++L   
Sbjct: 51  DELEIADLSG-YGRLI--------RSGLTD-----PNKHI-----VEDAFTPGRNMLFLL 91

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-------LRFPLGDMKK 197
                   V  D     ++     L  DQ+       +  +         +  PL    K
Sbjct: 92  TAAAHAHQVNADAVSIGLLHEETSLFPDQTSGFLQDAEALITRIMGRSIKVLAPLAAFHK 151

Query: 198 ESVRDLAREMG 208
           + V  LA+  G
Sbjct: 152 DEVIQLAKAKG 162


>gi|190150401|ref|YP_001968926.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303253350|ref|ZP_07339499.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249157|ref|ZP_07531162.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307261555|ref|ZP_07543223.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263744|ref|ZP_07545350.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915532|gb|ACE61784.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648032|gb|EFL78239.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854327|gb|EFM86525.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306868678|gb|EFN00487.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306870865|gb|EFN02603.1| Thiamine biosynthesis protein thiI [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 482

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGHF 367


>gi|165976497|ref|YP_001652090.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876598|gb|ABY69646.1| thiamine biosynthesis protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 465

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 163 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 222

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 223 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 264

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 265 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 305

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 306 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGHF 350


>gi|145354797|ref|XP_001421662.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581900|gb|ABO99955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 402

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 63/199 (31%), Gaps = 66/199 (33%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR    
Sbjct: 5   VVLAYSGGLDTSIILKWLQDTYGCEVVTFT-------------ADLGQGEELEPARAKAA 51

Query: 82  TINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
              V      D  E F    + P          +Y  G +    +   R +       + 
Sbjct: 52  QFGVKEIFVDDLREEFVRDYVFPMFRANALYEGTYLLGTSIARPLIAKRQI------EIA 105

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +Q+GAD +  G                           DQ              +RF LG
Sbjct: 106 KQVGADAVCHG---------------------ATGKGNDQ--------------VRFELG 130

Query: 194 DM-KKESVRDLA--REMGL 209
               K  V+ +A  RE  L
Sbjct: 131 YYGLKPDVKVIAPWREWDL 149


>gi|126208546|ref|YP_001053771.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           L20]
 gi|126097338|gb|ABN74166.1| thiamine biosynthesis protein ThiI [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 482

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGHF 367


>gi|125602995|gb|EAZ42320.1| hypothetical protein OsJ_26892 [Oryza sativa Japonica Group]
          Length = 1297

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 60/196 (30%), Gaps = 39/196 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+ +  G  +  V +     R   + +       D      
Sbjct: 237 DEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYNERERVMLTFESD------ 290

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  E+F +    V  P       G   +          F D      Q
Sbjct: 291 ----LHLPVTCVDASEQFLSKLKGVKDPEMKRKIIGREFIAV--------FDDFAHKLEQ 338

Query: 136 LGADVLATGHYIRSRLYVG--------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   G+ ++  LY            G+      +           +    +     
Sbjct: 339 KIGKRP--GYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-------VGGLPKDMKLK 389

Query: 188 LRFPLGDMKKESVRDL 203
           L  PL  + K+ VR L
Sbjct: 390 LIEPLKLLFKDEVRKL 405


>gi|119608342|gb|EAW87936.1| argininosuccinate synthetase, isoform CRA_d [Homo sapiens]
          Length = 370

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV+A SGG+D+S +   LK  GYDVI   L     ++  +                    
Sbjct: 47  VVLAYSGGLDTSCILVWLKEQGYDVIA-YLANIGQKEDFEEARKKALKLGAKKVIA---- 101

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRT 123
                 + ++  RF+          YA     P+P    N  
Sbjct: 102 ---PWRMPEFYNRFKGR---NDLMEYAKQHGIPIPVTPKNPW 137


>gi|114326927|ref|YP_744084.1| argininosuccinate synthase [Granulibacter bethesdensis CGDNIH1]
 gi|119361278|sp|Q0BVJ1|ASSY_GRABC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|114315101|gb|ABI61161.1| argininosuccinate synthase [Granulibacter bethesdensis CGDNIH1]
          Length = 416

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y+   VT                  G+++  ARR  
Sbjct: 14  KKVVLAYSGGLDTSVILRWLQTT-YNCEVVTF-----------TADLGQGEELEPARRKA 61

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   V      D  E F    + P           Y  G +    +   R +       +
Sbjct: 62  EMFGVKEIFVDDLRETFVKDFVFPMFRANAVYEGQYLLGTSIARPLIAQRQI------EI 115

Query: 133 TRQLGADVLATG 144
               GAD +A G
Sbjct: 116 AELTGADAVAHG 127


>gi|30585135|gb|AAP36840.1| Homo sapiens asparagine synthetase [synthetic construct]
 gi|60654009|gb|AAX29697.1| asparagine synthetase [synthetic construct]
          Length = 562

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 299 ARKVADHIGSEHYEVLFNSE 318


>gi|50287423|ref|XP_446141.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74610356|sp|Q6FUF3|GUAA_CANGA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49525448|emb|CAG59065.1| unnamed protein product [Candida glabrata]
          Length = 525

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 29/193 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ A+SGGVDS+V + L+       IG      L ++      + +          + + 
Sbjct: 226 VIGAVSGGVDSTVASKLMTEA----IGDRFHAILVDNGVLRLNEAATVK-------KTLV 274

Query: 81  DTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           D + ++  V D  + F +    V  P       G T +   +     K         +  
Sbjct: 275 DGLGINLTVVDAADEFLDNLKGVTDPEKKRKIIGNTFIHVFEREAE-KIKPKDGKAIEFL 333

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
                    I S  + G     +                +    +     L  PL ++ K
Sbjct: 334 LQGTLYPDVIESISFKGPSQTIKTHHN------------VGGLLENMKLKLIEPLRELFK 381

Query: 198 ESVRDLAREMGLD 210
           + VR+L   +G+ 
Sbjct: 382 DEVRELGELLGIS 394


>gi|168229248|ref|NP_597680.2| asparagine synthetase [glutamine-hydrolyzing] isoform a [Homo
           sapiens]
 gi|168229250|ref|NP_001664.3| asparagine synthetase [glutamine-hydrolyzing] isoform a [Homo
           sapiens]
 gi|168229252|ref|NP_899199.2| asparagine synthetase [glutamine-hydrolyzing] isoform a [Homo
           sapiens]
 gi|13432102|sp|P08243|ASNS_HUMAN RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Cell cycle control protein TS11; AltName:
           Full=Glutamine-dependent asparagine synthetase
 gi|15779114|gb|AAH14621.1| Asparagine synthetase [Homo sapiens]
 gi|30583065|gb|AAP35777.1| asparagine synthetase [Homo sapiens]
 gi|61362592|gb|AAX42248.1| asparagine synthetase [synthetic construct]
 gi|61362595|gb|AAX42249.1| asparagine synthetase [synthetic construct]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 299 ARKVADHIGSEHYEVLFNSE 318


>gi|152974868|ref|YP_001374385.1| exsB protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189038895|sp|A7GMN2|QUEC_BACCN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|152023620|gb|ABS21390.1| exsB protein [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+       +   +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAMQQFAEVEAVTF-NYNQR--HKLEIEC--------AAN 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|46143459|ref|ZP_00135196.2| COG0301: Thiamine biosynthesis ATP pyrophosphatase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 471

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 169 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSTSHKVRF 228

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 229 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 270

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 271 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 311

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  IV   G  
Sbjct: 312 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIVEEEGHF 356


>gi|117926867|ref|YP_867484.1| NAD+ synthetase [Magnetococcus sp. MC-1]
 gi|117610623|gb|ABK46078.1| NAD+ synthetase [Magnetococcus sp. MC-1]
          Length = 577

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 32/192 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++ AA+     G D V  V +             +  +G+ + DA    
Sbjct: 316 VVLGLSGGVDSALTAAVAVDALGADKVESVMM-----------PSAFTSGESLSDAELCA 364

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGA 138
             + +          F   +     +   AG  P    + N    ++ + L++++ + G 
Sbjct: 365 ANLGIKLGNLTIGPLF--ELFKQTLAEEFAGL-PEDVTEENLQPRIRGTLLMALSNKKGT 421

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
            +L TG                  M     + +D            L    F L + + E
Sbjct: 422 LLLTTG---NKSEMSVGYATLYGDMAGGYSVLKD-----------LLKTTVFELCEWRNE 467

Query: 199 SVRDLAREMGLD 210
             R   + + + 
Sbjct: 468 QARKEGKPLPIP 479


>gi|55628932|ref|XP_519219.1| PREDICTED: asparagine synthetase isoform 10 [Pan troglodytes]
 gi|114614677|ref|XP_001171297.1| PREDICTED: asparagine synthetase isoform 6 [Pan troglodytes]
 gi|114614679|ref|XP_001171313.1| PREDICTED: asparagine synthetase isoform 7 [Pan troglodytes]
 gi|114614681|ref|XP_001171326.1| PREDICTED: asparagine synthetase isoform 8 [Pan troglodytes]
 gi|114614683|ref|XP_001171342.1| PREDICTED: asparagine synthetase isoform 9 [Pan troglodytes]
 gi|14250542|gb|AAH08723.1| Asparagine synthetase [Homo sapiens]
 gi|37674405|gb|AAQ96856.1| unknown [Homo sapiens]
 gi|51094870|gb|EAL24115.1| asparagine synthetase [Homo sapiens]
 gi|119597129|gb|EAW76723.1| hCG2044123 [Homo sapiens]
 gi|119597136|gb|EAW76730.1| hCG18251, isoform CRA_a [Homo sapiens]
 gi|119597137|gb|EAW76731.1| hCG18251, isoform CRA_a [Homo sapiens]
 gi|119597138|gb|EAW76732.1| hCG18251, isoform CRA_a [Homo sapiens]
 gi|119597139|gb|EAW76733.1| hCG18251, isoform CRA_a [Homo sapiens]
 gi|123991511|gb|ABM83944.1| asparagine synthetase [synthetic construct]
 gi|123999402|gb|ABM87262.1| asparagine synthetase [synthetic construct]
 gi|261861428|dbj|BAI47236.1| asparagine synthetase [synthetic construct]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 299 ARKVADHIGSEHYEVLFNSE 318


>gi|326333837|ref|ZP_08200070.1| NAD+ synthetase [Nocardioidaceae bacterium Broad-1]
 gi|325948419|gb|EGD40526.1| NAD+ synthetase [Nocardioidaceae bacterium Broad-1]
          Length = 338

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
            K   +V+ +SGG+DSSVVAAL  +  G D V  + +
Sbjct: 39 ANKRKGIVLGVSGGIDSSVVAALAVKALGRDRVFALHM 76


>gi|152990952|ref|YP_001356674.1| hypothetical protein NIS_1208 [Nitratiruptor sp. SB155-2]
 gi|151422813|dbj|BAF70317.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 253

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 24/142 (16%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR----DGYDVIGVTLQLYNSRKASKRKG 65
            +++ +   +  RV+V +SGG DS  +   LK       YD    T +            
Sbjct: 17  TNVEFELLKEGDRVLVGLSGGKDSLTLVHALKHIQRVAPYD---FTFK--------AVTI 65

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
           S   G++     + C+   + H V      +   +     +          C   +R ++
Sbjct: 66  SYGMGENYDFLTKHCEEYGIEHTV------YETEIFD--LAKEKIRTNSSYCSFFSR-MR 116

Query: 126 FSDLLSVTRQLGADVLATGHYI 147
              L +   Q G + LA GH++
Sbjct: 117 RGALYTYALQNGFNKLALGHHL 138


>gi|339987|gb|AAA36781.1| ts11 cell cycle control protein [Homo sapiens]
          Length = 540

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 229 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 277

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 278 ARKVADHIGSEHYEVLFNSE 297


>gi|299749176|ref|XP_001838564.2| GMP synthase [Coprinopsis cinerea okayama7#130]
 gi|298408318|gb|EAU83257.2| GMP synthase [Coprinopsis cinerea okayama7#130]
          Length = 538

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYD 75
           PK  RV+ A+SGGVDS+V A L+       IG      + ++    K +          D
Sbjct: 225 PKG-RVIGAVSGGVDSTVAAKLMHEA----IGDRFHAIMVDNGVLRKDEAKQVYEMLNRD 279

Query: 76  ARRVCDTINVSHYVFDYEERF 96
                  + V+  V D  ERF
Sbjct: 280 -------LGVNLTVVDASERF 293


>gi|179100|gb|AAA51789.1| asparagine synthetase [Homo sapiens]
 gi|533200|gb|AAA52756.1| asparagine synthetase [Homo sapiens]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 299 ARKVADHIGSEHYEVLFNSE 318


>gi|14591544|ref|NP_143626.1| hypothetical protein PH1786 [Pyrococcus horikoshii OT3]
 gi|3258222|dbj|BAA30905.1| 201aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 201

 Score = 44.4 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 37/193 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++MRV+  +S G+DS V   L+   G +V  +  +     +  ++K           AR+
Sbjct: 2   EEMRVIGLLSSGIDSPVAIHLMASRGAEVYPLHFR---QDEIKEKK-----------ARK 47

Query: 79  VCDTINVSH--YVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCNRTVKFSDLLSVTRQ 135
           +   +   H   V D +      V  P              C+ C  T+         R+
Sbjct: 48  LVSRLKEIHGEKVKDLKVVDALKVQGPVFEKLRELKREKWICIFCKYTMYMVAE-KYARE 106

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           +GA+ + TG  +        D                               +  PL  +
Sbjct: 107 VGAEAIVTGDSLGQVASQTLDNLMVI-------------STATNLP------IIRPLIAL 147

Query: 196 KKESVRDLAREMG 208
            KE +  +A+E+G
Sbjct: 148 DKEEIVRIAKEIG 160


>gi|325287523|ref|YP_004263313.1| asparagine synthase (glutamine-hydrolyzing) [Cellulophaga lytica
           DSM 7489]
 gi|324322977|gb|ADY30442.1| asparagine synthase (glutamine-hydrolyzing) [Cellulophaga lytica
           DSM 7489]
          Length = 618

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 26  AMSGGVDSSVV----AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           A+SGG+DSS      A L K +G        + +     +   G+         A++V D
Sbjct: 259 ALSGGLDSSATISAMANLAKDNG-----SYSKDWQHAFVASFPGTPLDESYY--AKKVTD 311

Query: 82  TINVSHYVFDYEE-RFRNAVIVPFASSYAAGET-PLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +     D    +  + +   F        T P+P +    +VK + +       GAD
Sbjct: 312 NLGIGATFVDINPLQHWDKLEEYFYKFEDLYITSPIPMIMLYESVKKNGVTVTLDGHGAD 371

Query: 140 VLATGH 145
            L +G+
Sbjct: 372 ELLSGY 377


>gi|322375720|ref|ZP_08050232.1| ExsB protein [Streptococcus sp. C300]
 gi|321279428|gb|EFX56469.1| ExsB protein [Streptococcus sp. C300]
          Length = 217

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  A  +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAEEIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +QLG 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDMEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQLGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|282162940|ref|YP_003355325.1| NH(3)-dependent NAD(+) synthetase [Methanocella paludicola SANAE]
 gi|282155254|dbj|BAI60342.1| NH(3)-dependent NAD(+) synthetase [Methanocella paludicola SANAE]
          Length = 268

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 38/187 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A+SGG+DS++VA L  R    V+ V   L   R  S          D+ DAR +  ++
Sbjct: 35  ILALSGGIDSALVAVLASR----VVDVFGLLLPDRATSD-------PGDMEDARDLAKSL 83

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            + + + +         IV    S      P  C      VK         ++  +  A+
Sbjct: 84  GMDYELIEIGG------IVEAVYSARPNLGPKECRLAYANVKPRV------RMIMNYFAS 131

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
               R  L  G+    +  +      +    Y               P+  + K  VR +
Sbjct: 132 NLDGRIVLGTGN----KTELLMGYFTK----YGDGGVD-------LLPIAGLYKTRVRQM 176

Query: 204 AREMGLD 210
           A+ +G+ 
Sbjct: 177 AKHVGVP 183


>gi|229846706|ref|ZP_04466813.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 7P49H1]
 gi|229810195|gb|EEP45914.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 7P49H1]
          Length = 485

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFITINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|227540223|ref|ZP_03970272.1| GMP synthase [Sphingobacterium spiritivorum ATCC 33300]
 gi|300771945|ref|ZP_07081816.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|227239947|gb|EEI89962.1| GMP synthase [Sphingobacterium spiritivorum ATCC 33300]
 gi|300761331|gb|EFK58156.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 516

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           DL K   +  V++A+SGGVDS+V   LL + 
Sbjct: 206 DLKKQLGNDHVILALSGGVDSTVAGVLLHQA 236


>gi|254424253|ref|ZP_05037971.1| NAD synthase family [Synechococcus sp. PCC 7335]
 gi|196191742|gb|EDX86706.1| NAD synthase family [Synechococcus sp. PCC 7335]
          Length = 568

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++V+A+     G  +V+GV +                +   + DA ++
Sbjct: 303 KAVIGLSGGIDSALVSAIAAEALGPQNVLGVLM-----------PSPYSSKHSISDAEQL 351

Query: 80  CDTINVSHYVF 90
              I +     
Sbjct: 352 AKNIGIPTETI 362


>gi|330506762|ref|YP_004383190.1| ExsB protein [Methanosaeta concilii GP-6]
 gi|328927570|gb|AEB67372.1| ExsB protein [Methanosaeta concilii GP-6]
          Length = 220

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V+ +SGG+DS+ +   L  DGY V  +T   +N  +  K++  C        A  + 
Sbjct: 1  MKAVLILSGGLDSTTLLYKLLADGYLVDALT---FNYGQKHKKEIDC--------AIAIT 49

Query: 81 DTINVSHYVFDYE 93
            ++V H + D  
Sbjct: 50 SRLDVPHQIIDLS 62


>gi|307594196|ref|YP_003900513.1| PP-loop domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549397|gb|ADN49462.1| PP-loop domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 338

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           D R+ +A+SGG DS  +  LL   +R G     V L  ++  +             V   
Sbjct: 51  DDRIGIAISGGKDSLTLMYLLGKFRRQGKIPRNVELIAFSINEGHPYSCF-YRMARVDYV 109

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT--- 133
           +++ +  N+ + V+ ++E F           ++ G     C           L       
Sbjct: 110 QKLSEEFNIPYRVYTFKELFGVTATDIAHGLWSKGINVHMCTID------GVLRRRAMNI 163

Query: 134 --RQLGADVLATGHYI 147
             RQLG   +ATGH +
Sbjct: 164 IGRQLGLTKIATGHNL 179


>gi|304317532|ref|YP_003852677.1| GMP synthase, large subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779034|gb|ADL69593.1| GMP synthase, large subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 512

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 36/203 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +      VV A+SGGVDSSV A L+ R  +D ++ + +     RK    K       
Sbjct: 210 EIRQKVGKDNVVCALSGGVDSSVAAVLVNRAIHDQLVCIFVDNGLLRKNEGEKVVETFK- 268

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                    +  ++     D ++RF      V  P              +  N  +    
Sbjct: 269 ---------NNFDMEIIKVDAKDRFLEKLKGVKDP---EQKRK------IIGNEFI--EV 308

Query: 129 LLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                +++G    L  G        V + G       +           +    +    +
Sbjct: 309 FKEEAKKIGDVKYLVQG---TLYPDVIESGSPVASTIKSHHN-------VGGLPENVGFE 358

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + RE+G+ 
Sbjct: 359 LIEPLRMLFKDEVRQVGRELGMP 381


>gi|224044955|ref|XP_002197515.1| PREDICTED: asparagine synthetase [Taeniopygia guttata]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 22  RVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARR 78
           R+   +SGG+DSS V A LLK          ++    N    +   G      D+  AR+
Sbjct: 252 RIGCLLSGGLDSSLVAAVLLK---------LMKEMNINYPLQTFAIGM-ENSPDLLAARK 301

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
           V   I   H+            I     S    +
Sbjct: 302 VAAHIGSEHHEVILNTEEGIQAIEDVIFSLETYD 335


>gi|119719237|ref|YP_919732.1| thiamine biosynthesis protein ThiI [Thermofilum pendens Hrk 5]
 gi|119524357|gb|ABL77729.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermofilum
           pendens Hrk 5]
          Length = 484

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 13/84 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + +V+  +SGG DS+V A  + + G +V  +              G       +  A++
Sbjct: 173 SEGKVLALISGGYDSAVAAWYMLKRGAEVHYLY---------CNMAGDLTKSLVLSVAKK 223

Query: 79  VCDT----INVSHYVFDYEERFRN 98
           + D+         YV D+    R 
Sbjct: 224 LADSWSYGYKPRLYVADFSPLLRE 247


>gi|315426758|dbj|BAJ48382.1| argininosuccinate synthase [Candidatus Caldiarchaeum subterraneum]
 gi|315426767|dbj|BAJ48390.1| argininosuccinate synthase [Candidatus Caldiarchaeum subterraneum]
          Length = 394

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 36/195 (18%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+V +A SGG+D++V+   + +R   +V+ VT+ +      ++ +        V      
Sbjct: 1   MKVALAYSGGLDTTVMIKWISQRYNAEVVTVTVDVGQDEDFAEIEEKAYKSGAVK----- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                  HY  D +++F +  +     + A  E   P     +R +   +   V  + G 
Sbjct: 56  -------HYSIDAKKKFADEFLSRAIKANAMYERSYPLSSALSRPLIAEETAKVALKEGC 108

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
           D +A G                    +  D  R  + F           +  P+   +M 
Sbjct: 109 DAVAHG-----------------CTGKGNDQLRFDATFAAVAPGL---KIIAPVREWNMS 148

Query: 197 KESVRDLAREMGLDI 211
           ++   + A E  L +
Sbjct: 149 RDEEIEYALEHNLPV 163


>gi|294629011|ref|ZP_06707571.1| glutamine-dependent NAD(+) synthetase [Streptomyces sp. e14]
 gi|292832344|gb|EFF90693.1| glutamine-dependent NAD(+) synthetase [Streptomyces sp. e14]
          Length = 591

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G + V GV++                +     DA  + 
Sbjct: 335 VLIGLSGGIDSALVAAIACDAVGPENVYGVSM-----------PSKYSSEHSKDDAAELA 383

Query: 81  DTINVSHYVFDYEERF 96
               ++         F
Sbjct: 384 RRTGLNFRTVPIVPMF 399


>gi|326201639|ref|ZP_08191510.1| argininosuccinate synthase [Clostridium papyrosolvens DSM 2782]
 gi|325988239|gb|EGD49064.1| argininosuccinate synthase [Clostridium papyrosolvens DSM 2782]
          Length = 404

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + GY+VI   +           +      + +       
Sbjct: 5   KVLLAYSGGLDTSIIIPWLKENYGYEVIA--MA---GDVGQGEELEPLNEKAIKTGAS-- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F    I P           Y  G +        R +    ++ + 
Sbjct: 58  -----KLYIEDLKEEFITDFIYPTLKAGAIYEGKYLLGTSFA------RPIIAKRMVEIA 106

Query: 134 RQLGADVLATG 144
            + G   +  G
Sbjct: 107 IKEGCTAICHG 117


>gi|325981539|ref|YP_004293941.1| NAD+ synthetase [Nitrosomonas sp. AL212]
 gi|325531058|gb|ADZ25779.1| NAD+ synthetase [Nitrosomonas sp. AL212]
          Length = 543

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ +SGGVDS++  A+      D +G      +  +         A   + DA  + + 
Sbjct: 278 VLLGLSGGVDSALALAIAV----DALGA-----DQIRTVMMPTRYTASMSLEDANEMAEL 328

Query: 83  INVSHYVFDYE---ERFRNAVIVPF 104
           + V H   D E   + +   +   F
Sbjct: 329 LGVKHIECDIESLFDLYLKKIAEDF 353


>gi|256811233|ref|YP_003128602.1| argininosuccinate synthase [Methanocaldococcus fervens AG86]
 gi|256794433|gb|ACV25102.1| argininosuccinate synthase [Methanocaldococcus fervens AG86]
          Length = 395

 Score = 44.4 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 41/201 (20%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+ V A SGG+D+S    LL+   GY V+ V + +    +  K                 
Sbjct: 3   RIAVLAYSGGLDTSCCLKLLEDKYGYKVVSVCVDVGQPEEEIKEVEEKAKK--------- 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
              + V  HY  D +E F    I     + A  E  PL        + +   + V +++G
Sbjct: 54  ---LGVLKHYTIDAKEEFVKDYIFKAIKANAMYEGYPLSTALARPLIAYKV-IEVAKEVG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-DLRFPLGDMK 196
           A+ +A G                   C       DQ  F      +     +  P+ D+ 
Sbjct: 110 AEAVAHG-------------------CTGK--GNDQFRFETTIRIKAPDLKIIAPIRDLN 148

Query: 197 KESVRDL--AREMGLDIADKS 215
              V ++  A+E G+ I  +S
Sbjct: 149 LTRVEEIEYAKEKGIPIPTES 169


>gi|284048976|ref|YP_003399315.1| exsB protein [Acidaminococcus fermentans DSM 20731]
 gi|283953197|gb|ADB48000.1| exsB protein [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 17/82 (20%)

Query: 20 DMRVVVAMSGGVDS----SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
          + + +V  SGGVDS    SV     +  G + +                      +++  
Sbjct: 2  NKKALVLSSGGVDSTTCVSVAV---EEFGKENV----------STVSIFYGQKHRKELEC 48

Query: 76 ARRVCDTINVSHYVFDYEERFR 97
          AR+V +   + HY  D  + F+
Sbjct: 49 ARKVAEYYGLPHYELDLSKIFQ 70


>gi|257064671|ref|YP_003144343.1| NAD+ synthetase [Slackia heliotrinireducens DSM 20476]
 gi|256792324|gb|ACV22994.1| NAD+ synthetase [Slackia heliotrinireducens DSM 20476]
          Length = 268

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23 VVVAMSGGVDSSVVAALLKR-DGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          VV+ +SGG+DSS+VA +     G + V G  +            G       + DA+ + 
Sbjct: 26 VVLGLSGGIDSSLVACMCVEVLGPEHVHG-YM----------LPGPYSTDHSLIDAQLLA 74

Query: 81 DTINVSHYVFDYEERF 96
          + + ++  +      +
Sbjct: 75 NNLGLNTEIISIVGAY 90


>gi|229084430|ref|ZP_04216710.1| hypothetical protein bcere0022_10700 [Bacillus cereus Rock3-44]
 gi|228698970|gb|EEL51675.1| hypothetical protein bcere0022_10700 [Bacillus cereus Rock3-44]
          Length = 220

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+       +   +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAMQQFAEVEAVTF-NYNQR--HKLEIDC--------AAD 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|225567970|ref|ZP_03776995.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM
           15053]
 gi|225163258|gb|EEG75877.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDA 76
           +   + V +SGG DS     LL    Y + G+  + Y +    ++       +  D    
Sbjct: 22  EGDHIAVGISGGKDSLT---LL----YALHGLR-RFYPNKFELSAVTVDLGYSECDFTPV 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++C  + V + +           I              PC  C +  K   L    +++
Sbjct: 74  IKLCKELGVPYRIV-------KTDIAHILFEERKES--NPCSLCAKMRK-GALNQAVKEM 123

Query: 137 GADVLATGHY 146
           G + +A  H+
Sbjct: 124 GCNKVAYAHH 133


>gi|149377768|ref|ZP_01895501.1| NAD synthase [Marinobacter algicola DG893]
 gi|149357940|gb|EDM46429.1| NAD synthase [Marinobacter algicola DG893]
          Length = 550

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  A+     G D V  V +                +G  + DA    
Sbjct: 294 VVLGLSGGIDSAVTLAIAADALGADRVRAVMM-----------PFRYTSGMSIEDAEAEA 342

Query: 81  DTINVSHYVFDYEERF 96
             + V + VF  E  +
Sbjct: 343 VALGVQYDVFSIEPMY 358


>gi|167035185|ref|YP_001670416.1| exsB protein [Pseudomonas putida GB-1]
 gi|189038937|sp|B0KTI3|QUEC_PSEPG RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|166861673|gb|ABZ00081.1| exsB protein [Pseudomonas putida GB-1]
          Length = 228

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          D R V+ +SGG+DS+ V A+ K +GY     T+        S   G     + +  A RV
Sbjct: 3  DKRAVILLSGGLDSATVVAMAKAEGYSC--YTM--------SFDYGQRHRAE-LNAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARDLGVVEHKVI 63


>gi|327400223|ref|YP_004341062.1| asparagine synthase [Archaeoglobus veneficus SNP6]
 gi|327315731|gb|AEA46347.1| asparagine synthase [Archaeoglobus veneficus SNP6]
          Length = 381

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 23/123 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +A SGGVDSS++AAL     YDV     QL N   + + +            R     + 
Sbjct: 151 IAFSGGVDSSLLAAL-----YDV-----QLINVTASREEE---------EHVRYAAKLLG 191

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
               V+ + E+    V         A ET  P +  +  +     +   + LG + +  G
Sbjct: 192 REIEVYRFGEQ---EVKEVLPEVVKAIETTNP-LQVSIGIPVYLAMKFAKSLGYNQVIFG 247

Query: 145 HYI 147
              
Sbjct: 248 QGA 250


>gi|317486830|ref|ZP_07945646.1| thiamine biosynthesis protein [Bilophila wadsworthia 3_1_6]
 gi|316921993|gb|EFV43263.1| thiamine biosynthesis protein [Bilophila wadsworthia 3_1_6]
          Length = 357

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 25/151 (16%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
              SGG+DS + A L+   G  V  +          +   G                   
Sbjct: 10  ALFSGGLDSILAARLIMEQGLVVRCLHF-------VTPFFGKPQLIPHWE------KVYG 56

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           +     D  E F   +      ++  G+   PCVDC   +       + ++ GA  L +G
Sbjct: 57  LEVEAVDVGEAFVRLLRER--PAHGFGKVMNPCVDCKILM-MRKARELMKKWGASFLISG 113

Query: 145 HYIRSRLYVG---------DDGKRRRIMCRP 166
             +  R              D + +  + RP
Sbjct: 114 EVLGQRPMSQRRDTLNVIRRDAEVKESLLRP 144


>gi|302550954|ref|ZP_07303296.1| NH(3)-dependent NAD(+) synthetase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468572|gb|EFL31665.1| NH(3)-dependent NAD(+) synthetase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 603

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DSS+VAA+     G  +V GV++                +     DA  + 
Sbjct: 347 VLIGLSGGIDSSLVAAIACDAVGAQNVYGVSM-----------PSKYSSDHSKDDAAELA 395

Query: 81  DTINVSHYVFDYEERF 96
               +++     E  F
Sbjct: 396 RRTGLNYRTVAIEPMF 411


>gi|56459724|ref|YP_155005.1| argininosuccinate synthase [Idiomarina loihiensis L2TR]
 gi|61211401|sp|Q5QWZ9|ASSY_IDILO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56178734|gb|AAV81456.1| Argininosuccinate synthase [Idiomarina loihiensis L2TR]
          Length = 403

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S +   LK + G +V+           A   +G+         A+  
Sbjct: 5   KKVVLAYSGGLDTSAIVPWLKENYGCEVVAF--------VADVGQGAEELEGVEEKAKAS 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             +     +V D ++ F    + P          +Y  G      +     V       V
Sbjct: 57  GAS---ECHVVDLKDEFVKNYVYPTLKTGAIYEGTYLLGTAMARPIIAKAQV------EV 107

Query: 133 TRQLGADVLATG 144
            R++GAD L+ G
Sbjct: 108 ARKVGADALSHG 119


>gi|87124945|ref|ZP_01080792.1| hypothetical protein RS9917_03048 [Synechococcus sp. RS9917]
 gi|86167265|gb|EAQ68525.1| hypothetical protein RS9917_03048 [Synechococcus sp. RS9917]
          Length = 293

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 71/215 (33%), Gaps = 49/215 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
              RV VA SGGVDSS+VAA+     G   I +T                 A Q   +AR
Sbjct: 31  SQQRVCVAYSGGVDSSLVAAIAWEQLGTGAIAIT-----------GVSPALAPQLHEEAR 79

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           +    + + H      E        P  +S      P  C  C R +    L ++  Q G
Sbjct: 80  QQAAWLGIRHQEVATSELE-----DPDYTS----NPPERCFACKREL-HRHLAAIAAQAG 129

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
              +  G      +   D G  R  +                        +R PL +  +
Sbjct: 130 QAQVVDG------VNHDDLGDHRPGIEAARQAG-----------------VRSPLAELGL 166

Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230
            K +VR ++R +G    DK      C   +  Y D
Sbjct: 167 SKLAVRQISRSLGFPWWDKP--AQPCLASRFPYGD 199


>gi|313203419|ref|YP_004042076.1| pp-loop domain protein [Paludibacter propionicigenes WB4]
 gi|312442735|gb|ADQ79091.1| PP-loop domain protein [Paludibacter propionicigenes WB4]
          Length = 258

 Score = 44.4 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 39/139 (28%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           D  +++ +SGG DS  +  LL          + V  V + + N               D+
Sbjct: 32  DDHILIGLSGGKDSLALVELLGERQKIFVPRFKVTAVHISVENIP----------YQSDL 81

Query: 74  YDARRVCDTINVS--HYVF---DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              +  C+  ++   H+V    D  +  ++                      +R      
Sbjct: 82  EYLKTYCNKFDIPFVHHVTRFDDTTDTHKSTCF---------------LCSWHRR---KA 123

Query: 129 LLSVTRQLGADVLATGHYI 147
           L  V R LG + LA GH++
Sbjct: 124 LFDVARNLGCNKLALGHHL 142


>gi|331084861|ref|ZP_08333949.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410955|gb|EGG90377.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 244

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDA 76
           +   + V +SGG DS     LL    Y + G+  + Y      ++           +   
Sbjct: 22  EGDHIAVGISGGKDSLT---LL----YALHGLK-RFYPKKFELSAITVDLGYEEFHLEPI 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++C  + V + +           I              PC  C +  K   L    + +
Sbjct: 74  EKLCAQLEVPYKIV-------RTDIAHILFEERKES--NPCSLCAKMRK-GALNDAVKDM 123

Query: 137 GADVLATGHY 146
           G + +A  H+
Sbjct: 124 GCNKVAYAHH 133


>gi|330838658|ref|YP_004413238.1| NAD+ synthetase [Selenomonas sputigena ATCC 35185]
 gi|329746422|gb|AEB99778.1| NAD+ synthetase [Selenomonas sputigena ATCC 35185]
          Length = 629

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 6/31 (19%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAAL 39
           L+S+D+       +VVV  SGG+DS+V AAL
Sbjct: 311 LDSIDM------KKVVVGASGGIDSAVAAAL 335


>gi|325661579|ref|ZP_08150203.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472106|gb|EGC75320.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 244

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDA 76
           +   + V +SGG DS     LL    Y + G+  + Y      ++           +   
Sbjct: 22  EGDHIAVGISGGKDSLT---LL----YALHGLK-RFYPKKFELSAITVDLGYEEFHLEPI 73

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            ++C  + V + +           I              PC  C +  K   L    + +
Sbjct: 74  EKLCAQLEVPYKIV-------RTDIAHILFEERKES--NPCSLCAKMRK-GALNDAVKDM 123

Query: 137 GADVLATGHY 146
           G + +A  H+
Sbjct: 124 GCNKVAYAHH 133


>gi|291394755|ref|XP_002713733.1| PREDICTED: asparagine synthetase-like [Oryctolagus cuniculus]
          Length = 550

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
           D R+   +SGG+DSS+VAA L R           L  ++     +      +D  D   A
Sbjct: 239 DRRIGCLLSGGLDSSLVAASLLRQ----------LKEAQVQYALQTFAIGMEDSPDLLAA 288

Query: 77  RRVCDTINVSHYVFDYEER 95
           R+V + I   H+   +   
Sbjct: 289 RKVANHIGSEHHEVLFNSE 307


>gi|260887366|ref|ZP_05898629.1| NAD synthase family protein [Selenomonas sputigena ATCC 35185]
 gi|260862904|gb|EEX77404.1| NAD synthase family protein [Selenomonas sputigena ATCC 35185]
          Length = 621

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 6/31 (19%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAAL 39
           L+S+D+       +VVV  SGG+DS+V AAL
Sbjct: 303 LDSIDM------KKVVVGASGGIDSAVAAAL 327


>gi|203284429|ref|YP_002222169.1| NH(3)-dependent NAD synthetase [Borrelia duttonii Ly]
 gi|201083872|gb|ACH93463.1| NH(3)-dependent NAD synthetase [Borrelia duttonii Ly]
          Length = 522

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA +     G + V+G+++           KGS      V DA R+
Sbjct: 265 KVHLGVSGGIDSALVAYIACTALGANRVVGISM-----PSRFSSKGS------VLDAERL 313

Query: 80  CDTINVSHYVFDYEERFR 97
            + +         E  F+
Sbjct: 314 ANELGFELIHMPIESMFQ 331


>gi|190575558|ref|YP_001973403.1| putative transcriptional regulator [Stenotrophomonas maltophilia
          K279a]
 gi|254764387|sp|B2FRM5|QUEC_STRMK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|190013480|emb|CAQ47115.1| putative transcriptional regulator [Stenotrophomonas maltophilia
          K279a]
          Length = 221

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V A+ +  G+ V  +          S R G      ++  A RV 
Sbjct: 2  KKAVVLLSGGMDSAAVIAMAQEQGFAVHAL----------SVRYGQ-RHTSELDAAARVA 50

Query: 81 DTIN-VSHYVFD 91
               V+H + D
Sbjct: 51 KAQGVVAHKIVD 62


>gi|323341681|ref|ZP_08081914.1| thiamine biosynthesis protein ThiI [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464106|gb|EFY09299.1| thiamine biosynthesis protein ThiI [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 409

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
             +V+V +SGG+DS V A L+ + G  +  +  
Sbjct: 187 QGKVMVMLSGGIDSPVAAYLMMKRGVRIEAIHF 219


>gi|114614685|ref|XP_001171212.1| PREDICTED: asparagine synthetase isoform 3 [Pan troglodytes]
 gi|114614687|ref|XP_001171228.1| PREDICTED: asparagine synthetase isoform 4 [Pan troglodytes]
 gi|114614689|ref|XP_001171245.1| PREDICTED: asparagine synthetase isoform 5 [Pan troglodytes]
          Length = 540

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 229 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 277

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 278 ARKVADHIGSEHYEVLFNSE 297


>gi|86133562|ref|ZP_01052144.1| Argininosuccinate synthase [Polaribacter sp. MED152]
 gi|85820425|gb|EAQ41572.1| Argininosuccinate synthase [Polaribacter sp. MED152]
          Length = 391

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 14/126 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V+A SGG+D+S  A  L ++ ++V  V                     +V +  R  
Sbjct: 2   KKLVIAYSGGLDTSYCAVSLSKE-FEVHAV-----------SVNTGGFTENEVKNIERNA 49

Query: 81  DTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQLGA 138
             + V+ Y   D    F N V+              P       +  +  ++   + + A
Sbjct: 50  YKMGVTTYKNIDAVATFYNKVVKYLIFGNVLKNATYPLSVSAERIIQAIEIIEYAKSINA 109

Query: 139 DVLATG 144
           + +A G
Sbjct: 110 EYIAHG 115


>gi|289450871|ref|YP_003475359.1| GMP synthase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185418|gb|ADC91843.1| GMP synthase (glutamine-hydrolyzing) [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 525

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 20/115 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVY- 74
           +V+ A SGGVDS+V A L+ +  G ++  +      L+L  S +  +  G          
Sbjct: 231 KVICAFSGGVDSAVAALLVHKAIGNNLTCIFVDHGLLRLGESEQVMEVFGKNYNMNIRRI 290

Query: 75  DARR--------VCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
           DA++        V D      +     ++ + F           Y    T  P V
Sbjct: 291 DAKQQFLTALQGVADPEKKRKI--IGAEFIKVFERIADEYHNVDYLVQGTIYPDV 343


>gi|260439428|ref|ZP_05793244.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876]
 gi|292808116|gb|EFF67321.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876]
          Length = 400

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 26/129 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL----QLYNSRKASKRKGSCCAGQDVYDAR 77
           R+ V +SGG DS ++A +LK          +    +LY+              +D+    
Sbjct: 169 RIAVCISGGKDSMLLARMLK----------MAKDYRLYDFSPEYIMMNPGYMERDMKQME 218

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                 ++          F   V               PC  C+R ++   L    ++LG
Sbjct: 219 FNNLLFDIP------VSYFNTNVFDD-VDEIGK----NPCFFCSR-MRRGHLYRKAKELG 266

Query: 138 ADVLATGHY 146
            + +A GH+
Sbjct: 267 CNKIALGHH 275


>gi|261403173|ref|YP_003247397.1| argininosuccinate synthase [Methanocaldococcus vulcanius M7]
 gi|261370166|gb|ACX72915.1| argininosuccinate synthase [Methanocaldococcus vulcanius M7]
          Length = 397

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 35/198 (17%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ V A SGG+D+S    LL+    Y V+ V                    +++ +    
Sbjct: 3   KIAVLAYSGGLDTSCCLKLLEDKYDYKVVSV------------CVDVGQPVEEIKEVEEK 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
              + V  HY  D +E F    I     + A  E  PL        + +   + + +++G
Sbjct: 51  AKNLGVLKHYTIDAKEEFVKDYIFRAIKANAMYEGYPLSTALARPLIAYKV-VEIAKEVG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           A+ +A G   +       +   R    +  DL+      +       L  +         
Sbjct: 110 AEAVAHGCTGKGNDQFRFETTIR---IKAPDLK-----VVAPIRDLNLTRV--------- 152

Query: 198 ESVRDLAREMGLDIADKS 215
           E + + A+E G+ I  +S
Sbjct: 153 EEI-EYAKEKGIPIPTES 169


>gi|168186413|ref|ZP_02621048.1| argininosuccinate synthase [Clostridium botulinum C str. Eklund]
 gi|169295536|gb|EDS77669.1| argininosuccinate synthase [Clostridium botulinum C str. Eklund]
          Length = 401

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 40/138 (28%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCC----AGQDVYD 75
           +VV+A SGG+D+S+    LK + Y  DVI                  CC      +D  +
Sbjct: 4   KVVLAYSGGLDTSITIHWLKEN-YNLDVIA-----------------CCVNVGQDEDFEE 45

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT---------VKF 126
            ++               + +   V   F S Y         +   +          +  
Sbjct: 46  IKKKAIKSG-------ATKIYVEDVKDEFVSEYIYKGVKADAIYEGKYLLGTSFARPLIA 98

Query: 127 SDLLSVTRQLGADVLATG 144
             L+    + GA  +  G
Sbjct: 99  KKLVEFAHKEGAKYICHG 116


>gi|220928770|ref|YP_002505679.1| argininosuccinate synthase [Clostridium cellulolyticum H10]
 gi|219999098|gb|ACL75699.1| argininosuccinate synthase [Clostridium cellulolyticum H10]
          Length = 404

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + GY+VI   +           +      + +       
Sbjct: 5   KVLLAYSGGLDTSIIIPWLKENYGYEVIA--MA---GDVGQGEELEPLNEKAIKTGAS-- 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F    I P           Y  G +        R +    ++ + 
Sbjct: 58  -----KLYIEDLKEEFITDFIYPTLKAGAIYEGKYLLGTSFA------RPIIAKRMVEIA 106

Query: 134 RQLGADVLATG 144
            + G   +  G
Sbjct: 107 IKEGCTAICHG 117


>gi|104783063|ref|YP_609561.1| hypothetical protein PSEEN4083 [Pseudomonas entomophila L48]
 gi|122402284|sp|Q1I6F8|QUEC_PSEE4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|95112050|emb|CAK16777.1| conserved hypothetical protein; ExsB protein [Pseudomonas
          entomophila L48]
          Length = 224

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          D R V+ +SGG+DS+ V A+ K +GY     T+        S   G     + +  A RV
Sbjct: 3  DKRAVILLSGGLDSATVVAMAKAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARDLGVVEHKVI 63


>gi|296010848|ref|NP_001171546.1| asparagine synthetase [glutamine-hydrolyzing] isoform b [Homo
           sapiens]
          Length = 540

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 229 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 277

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 278 ARKVADHIGSEHYEVLFNSE 297


>gi|170289520|ref|YP_001739758.1| ExsB family protein [Thermotoga sp. RQ2]
 gi|170177023|gb|ACB10075.1| ExsB family protein [Thermotoga sp. RQ2]
          Length = 303

 Score = 44.4 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 52/203 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
           KD ++ VA SGG DSS+VA L K          + L   R    +   G     +     
Sbjct: 2   KDGKLYVAFSGGKDSSLVAILAK----------MALGEERVELVTVDWGPYTYERSREIV 51

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R   +   + H       R +  V       +  G +   C  C R VK   +    +  
Sbjct: 52  RNFAEKHGLKHTFIP-SNRMQEKV-------WRHGPS---CNACTRDVKTVLVKRYAQG- 99

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              ++A+G           D   +  +                        +  PL  + 
Sbjct: 100 --HLVASGANAS-------DSWGKTGLK-------------------IFDGVYSPLYRVG 131

Query: 197 KESVRDLAREMGLDIADKSDSQD 219
           KE + ++ + +GL++    +S  
Sbjct: 132 KEEINEMLKFLGLEVKKIGESAG 154


>gi|325279460|ref|YP_004252002.1| exsB protein [Odoribacter splanchnicus DSM 20712]
 gi|324311269|gb|ADY31822.1| exsB protein [Odoribacter splanchnicus DSM 20712]
          Length = 223

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYD 46
           + +V +SGG+DSS    L +  G+D
Sbjct: 2  KKAIVLLSGGLDSSTALYLAQSQGFD 27


>gi|291550956|emb|CBL27218.1| preQ(0) biosynthesis protein QueC [Ruminococcus torques L2-14]
          Length = 227

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          M+ +V  SGG+DS+    L  K+ G D VI +                    +++  A  
Sbjct: 1  MKALVLFSGGIDSTTALGLAIKKYGKDQVIAL-----------SISYGQKHDKEIRAAIA 49

Query: 79 VCDTINVSHYVFDYEERFR 97
          V +   V H   D  + F+
Sbjct: 50 VAEYYGVEHLFLDLSKIFQ 68


>gi|254994297|ref|ZP_05276487.1| GMP synthase [Listeria monocytogenes FSL J2-064]
          Length = 379

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 66/193 (34%), Gaps = 38/193 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D +V++A+SGGVDSSVV  L+ +  G  +  +            RKG          A +
Sbjct: 219 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF-----VDHGLLRKGE---------ADQ 264

Query: 79  VCDTI----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           V  T+    N++    D ++RF + +                 +  N  +          
Sbjct: 265 VMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRK------IIGNEFIYV--FDDEAN 316

Query: 135 QL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +L G + LA G        + + G       +           +    +     L  PL 
Sbjct: 317 KLDGVEFLAQG---TLYTDIIESGTATAQTIKSHHN-------VGGLPEDMQFKLIEPLN 366

Query: 194 DMKKESVRDLARE 206
            + K+ VR L  E
Sbjct: 367 TLFKDEVRALGTE 379


>gi|218259686|ref|ZP_03475329.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224957|gb|EEC97607.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii
           DSM 18315]
          Length = 444

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 33/224 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++  V+V +SGG DS  +  +L   GY         +     S R        D    R 
Sbjct: 17  ENRPVLVGVSGGADSIALLTILVESGYSCTVAHCNFHLRGDESLR--------DEQFVRE 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               ++V   + D+               YAA       +   R +++          GA
Sbjct: 69  YARKLDVPFLMTDF-----------DTRKYAASRRLSIEMAA-RELRYDWFEEQRVATGA 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A  H+    +        R    R +   R ++ F+             PL  + +E
Sbjct: 117 QAIAVAHHRDDSVETLLMNLVRGTGIRGLSGIRPKNGFVVR-----------PLLAVSRE 165

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242
            + +     GL      DS ++       +  +           
Sbjct: 166 DILEWLARRGLRYVT--DSTNLSDAYTRNFIRLRVLPLLKEINP 207


>gi|212224510|ref|YP_002307746.1| hypothetical protein TON_1359 [Thermococcus onnurineus NA1]
 gi|212009467|gb|ACJ16849.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 263

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 27/147 (18%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           RL   D D++P   ++V+A S G DS+    +L+  G++V+ VT +L    +    K   
Sbjct: 61  RLTGKDFDRSPVGEKIVLAFSAGSDSTSTLKILRWAGFEVVPVTAKLPQMNEGVIEKAKS 120

Query: 68  CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKF 126
                V          ++  Y            I         G    P C  C+  V  
Sbjct: 121 YGAVFV----------DIPGY------------IEAMTEQMNKG---APICGRCHSMV-I 154

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYV 153
             +    R++GA ++A+G  + S L  
Sbjct: 155 KAVEDYAREIGAKIVASGDLLSSGLIS 181


>gi|194378776|dbj|BAG63553.1| unnamed protein product [Homo sapiens]
          Length = 540

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 229 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 277

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V D I   HY   +   
Sbjct: 278 ARKVADHIGSEHYEVLFNSE 297


>gi|157819969|ref|NP_001099721.1| cytoplasmic tRNA 2-thiolation protein 1 [Rattus norvegicus]
 gi|226711429|sp|B1WBV0|CTU1_RAT RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|149056111|gb|EDM07542.1| ATP binding domain 3 (predicted) [Rattus norvegicus]
 gi|171847383|gb|AAI61898.1| ATP binding domain 3 [Rattus norvegicus]
          Length = 382

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+   V V  SGG DS+V+A +L+      +G+TL L     A            +   R
Sbjct: 49  PQGAVVAVGASGGKDSTVLAHVLRELAPR-LGITLHL----VAVDEGIGGYRDAALEAVR 103

Query: 78  RVCDTINVSHYVFDYEERF----RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  +   +  YE+ F     +AV     S+  +G +   C  C   ++   L    
Sbjct: 104 SQAARWELPLTIVAYEDLFGGWTMDAVAR---STAGSGRSRSCCTFCG-VLRRRALEEGA 159

Query: 134 RQLGADVLATGHYI 147
           R +GA  + TGH  
Sbjct: 160 RLVGATHIVTGHNA 173


>gi|307545034|ref|YP_003897513.1| queuosine biosynthesis protein QueC [Halomonas elongata DSM 2581]
 gi|307217058|emb|CBV42328.1| K06920 queuosine biosynthesis protein QueC [Halomonas elongata
          DSM 2581]
          Length = 257

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + + P     VV  SGG+DS  V      +G DV  +         +           DV
Sbjct: 20 MSQAPASSATVVIYSGGMDSFTVLHRALGEGRDVHAL---------SFDYGQRHSRELDV 70

Query: 74 YDARRVCDTINVSHYVFDYEERF 96
            ARRVC  + V H V D     
Sbjct: 71 --ARRVCRDLEVPHQVVDIRAIH 91


>gi|169632732|ref|YP_001706468.1| hypothetical protein ABSDF0931 [Acinetobacter baumannii SDF]
 gi|169151524|emb|CAP00291.1| conserved hypothetical protein; putative exported protein
          [Acinetobacter baumannii]
          Length = 227

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 15/79 (18%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQD 72
          ++KN +  R +V +SGG+DS+   A   +  ++ I +  +  Y  R  ++          
Sbjct: 1  MEKNMRP-RAIVLLSGGLDSTTCLAW-AQARHECIAISFM--YGQRSTTE---------- 46

Query: 73 VYDARRVCDTINVSHYVFD 91
          +  A+ +     V H+V +
Sbjct: 47 LDAAKALAQRAGVEHHVIN 65


>gi|119719575|ref|YP_920070.1| hypothetical protein Tpen_0665 [Thermofilum pendens Hrk 5]
 gi|119524695|gb|ABL78067.1| phosphoadenosine phosphosulfate reductase [Thermofilum pendens Hrk
           5]
          Length = 614

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V V++SGG DS V   L  +  G + V  +                    + V  ARR+ 
Sbjct: 233 VFVSLSGGKDSLVTLHLAVKALGNEKVKALF-----------NNTGLEFEETVEYARRIA 281

Query: 81  DTINVSHYVFDYEERFRNA--VIVPFASSYA 109
           D   V     D  + F  A  V+ P A  Y 
Sbjct: 282 DYYGVELIEADAGDNFWRALPVMGPPARDYR 312


>gi|189499321|ref|YP_001958791.1| GMP synthase [Chlorobium phaeobacteroides BS1]
 gi|226738417|sp|B3ELI1|GUAA_CHLPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|189494762|gb|ACE03310.1| GMP synthase, large subunit [Chlorobium phaeobacteroides BS1]
          Length = 514

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 36/192 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+  +SGGVDS+V A L+ +  G  +  V +                   +     ++  
Sbjct: 224 VICGISGGVDSTVAAVLVSKAIGKQLHCVFVDN-----------GLLRKHEGDKVMKILK 272

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAA---GETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            + +S  + D EE F   +    +        G T +        +     L        
Sbjct: 273 PLGLSVNLVDAEEIFLKRLKSIASPEKKRKIIGRTFI--HIFEEQIHEEKFL-------V 323

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
                   I S    G     +                +    ++    L  PL ++ K+
Sbjct: 324 QGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKLKLIEPLRELFKD 371

Query: 199 SVRDLAREMGLD 210
            VR + RE+G+D
Sbjct: 372 EVRAVGRELGID 383


>gi|148690725|gb|EDL22672.1| ATP binding domain 3 [Mus musculus]
          Length = 430

 Score = 44.4 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G+TL L     A            +   R     
Sbjct: 64  VAVGASGGKDSTVLAHVLRELAPR-LGITLHL----VAVDEGIGGYRDAALEAVRSQAAR 118

Query: 83  INVSHYVFDYEERF----RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +   +  YE+ F     +AV     S+  +G +   C  C   ++   L    R +GA
Sbjct: 119 WELPLTIVAYEDLFGGWTMDAVAR---STAGSGRSRSCCTFCG-VLRRRALEEGARLVGA 174

Query: 139 DVLATGHYI 147
             + TGH  
Sbjct: 175 THIVTGHNA 183


>gi|288817937|ref|YP_003432284.1| ATPase, PP-loop superfamily [Hydrogenobacter thermophilus TK-6]
 gi|288787336|dbj|BAI69083.1| ATPase, PP-loop superfamily [Hydrogenobacter thermophilus TK-6]
 gi|308751535|gb|ADO45018.1| Rhodanese domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 440

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 24/132 (18%)

Query: 22  RVVVAMSGGVDSSVVAAL--LK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV VA+SGG DS  VA L  LK        D+    + L       K        + +  
Sbjct: 78  RVAVAVSGGKDS--VALLHALKKAFPEQ--DIYAFYINL-----GIKYYSDHLEKKVIEL 128

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  V     V   +++ +E+    +     + Y        C  C   +K +   ++  +
Sbjct: 129 AEMV----GVPIEIYNLKEKEGYTIDDFLLTKYKN----KMCSVCG-LIKRNIFTTLAVR 179

Query: 136 LGADVLATGHYI 147
           + AD +ATGH +
Sbjct: 180 VNADTVATGHNL 191


>gi|227872664|ref|ZP_03990994.1| PP-loop family ATPase [Oribacterium sinus F0268]
 gi|227841478|gb|EEJ51778.1| PP-loop family ATPase [Oribacterium sinus F0268]
          Length = 393

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 20/125 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V +SGG DS ++A L +    ++    TL                  ++         
Sbjct: 144 ICVCISGGKDSMIMAKLFQELKRHNKFPFTLHFLCMDPGYNAYNRQIIEEN-------AA 196

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + +      ++     +V               PC  C   ++   L S  ++LG + +
Sbjct: 197 LLGIPLEF--FQSDIFESVFT---------IDSSPCYVC-ARMRRGHLYSKAKELGCNKI 244

Query: 142 ATGHY 146
           A GH+
Sbjct: 245 ALGHH 249


>gi|225405420|ref|ZP_03760609.1| hypothetical protein CLOSTASPAR_04640 [Clostridium asparagiforme
           DSM 15981]
 gi|225043067|gb|EEG53313.1| hypothetical protein CLOSTASPAR_04640 [Clostridium asparagiforme
           DSM 15981]
          Length = 440

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D++ +   LK + GY+VI   +   +  + S+  G     +         
Sbjct: 25  KVILAYSGGLDTTTIIPWLKENFGYEVICCCI---DCGQGSELDGLDERAKLSG-----A 76

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLGAD 139
             +    Y+ D  + F +  IVP   + A  E                 L+ + R+ GA 
Sbjct: 77  SKL----YIEDLVDDFCDNYIVPCVKANAVYENKYLLGTSMARPAIAKCLVDIARKEGAA 132

Query: 140 VLATG 144
            +  G
Sbjct: 133 AICHG 137


>gi|327310179|ref|YP_004337076.1| NAD synthetase [Thermoproteus uzoniensis 768-20]
 gi|326946658|gb|AEA11764.1| NAD synthetase [Thermoproteus uzoniensis 768-20]
          Length = 284

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 54/194 (27%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DSSVVA LL R             ++        S    +D+ DA ++    
Sbjct: 37  VLGLSGGIDSSVVAVLLARA-----------TDNFFFLLMPSSSTPPRDIEDAMKI---- 81

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-------TVKFSDLLSVTRQL 136
            +           + AV+      +         V   +        V+   L +  ++L
Sbjct: 82  -IKLT----RAEGKYAVVP--IDEHVKALADAVGVADKKIVGNIKARVRMVLLYAYAQKL 134

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G  V+ TG   +S L +G   K         D   D                  P+GD+ 
Sbjct: 135 GYLVVGTGD--KSELMLGYFTKY-------GDGGVD----------------ILPIGDLY 169

Query: 197 KESVRDLAREMGLD 210
           K  VR L R +G+ 
Sbjct: 170 KTQVRQLGRCLGVP 183


>gi|238756449|ref|ZP_04617757.1| WbuX (WbeC) [Yersinia ruckeri ATCC 29473]
 gi|238705338|gb|EEP97747.1| WbuX (WbeC) [Yersinia ruckeri ATCC 29473]
          Length = 364

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++         +    + +       + +
Sbjct: 56  IIGLSGGLDSSYAAYVAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLI------EGL 105

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE      +     S+     P   +  +    FS L     +     +
Sbjct: 106 GLELYTEVVNWEE------MKDLQLSFLKAGIPDQDLVQDAAF-FSALYKFAHEHNVKHV 158

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 159 ITGSNFSTECCREPEEWGGY 178


>gi|94500712|ref|ZP_01307242.1| putative regulator protein [Oceanobacter sp. RED65]
 gi|94427267|gb|EAT12247.1| putative regulator protein [Oceanobacter sp. RED65]
          Length = 220

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 22 RVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          + VV  SGG+DS     LL    ++GYDV  +T   Y               ++V  A+ 
Sbjct: 5  KAVVIYSGGMDSFT---LLNKVVKEGYDVYALTF-NY----------GQKHVKEVEVAKT 50

Query: 79 VCDTINVSHYVFDYE 93
          VC  +NV H + D  
Sbjct: 51 VCQQLNVPHKILDIS 65


>gi|68250032|ref|YP_249144.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae
           86-028NP]
 gi|145632794|ref|ZP_01788527.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 3655]
 gi|145634986|ref|ZP_01790693.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittAA]
 gi|81335544|sp|Q4QKG3|THII_HAEI8 RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|68058231|gb|AAX88484.1| predicted thiamine biosynthesis ATP pyrophosphatase [Haemophilus
           influenzae 86-028NP]
 gi|144986450|gb|EDJ93016.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 3655]
 gi|145267852|gb|EDK07849.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittAA]
          Length = 485

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFITINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|37522502|ref|NP_925879.1| argininosuccinate synthase [Gloeobacter violaceus PCC 7421]
 gi|44887694|sp|Q7NCP5|ASSY_GLOVI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|35213503|dbj|BAC90874.1| argininosuccinate synthase [Gloeobacter violaceus PCC 7421]
          Length = 398

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 21/132 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +   +          G+D+   R+
Sbjct: 2   RAKKVVLAYSGGVDTSVCIPYLKHE-----------WGVEQVVALAADLGQGEDLEAVRQ 50

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAA-----GETPLPCVDCNRTVKFSDLLSV 132
                     +  D  E F   V     ++  A     G  PL        +    L+  
Sbjct: 51  KALASGADQAIVQDAREDF---VYDYAFAALQANALYEGRYPLATALARPLIA-RILVKC 106

Query: 133 TRQLGADVLATG 144
            + +GAD +A G
Sbjct: 107 AQAVGADAVAHG 118


>gi|325849612|ref|ZP_08170850.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480093|gb|EGC83170.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 511

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 42/197 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++  +SGGVDS++ A L+ +  G D+  +                        +A+ V 
Sbjct: 218 KMICGLSGGVDSTIAATLVHKAIGNDLQCIF--------------VDHGLLRKDEAKSVM 263

Query: 81  DT---INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQ 135
           D    I ++  + D  + F               E P     +  N  +         ++
Sbjct: 264 DQYKEIGLNVKMVDASKEF--------LDLLKGVEDPEEKRKIIGNHFI--EVFEREAKK 313

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-CDLRFPLG 193
            G A  L  G        V + GK +  + +           +    +  L   +  PL 
Sbjct: 314 FGDAKYLVQG---TIYPDVIESGKGKGSVIKSHHN-------VGGLPEDMLFEGVVEPLR 363

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +G+ 
Sbjct: 364 ELFKDEVRALGESIGVP 380


>gi|229825775|ref|ZP_04451844.1| hypothetical protein GCWU000182_01138 [Abiotrophia defectiva ATCC
           49176]
 gi|229790338|gb|EEP26452.1| hypothetical protein GCWU000182_01138 [Abiotrophia defectiva ATCC
           49176]
          Length = 357

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 43/245 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V +SGG DS  V   L    Y   V   T+      K +K               R+  
Sbjct: 64  AVGISGGKDSVFVLYELIHR-YRLHVKAFTMNNGFLSKEAKENID-----------RLVQ 111

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              V H   D++              +      +PC+ C+  + ++ ++++  ++ A ++
Sbjct: 112 EFQVEHEYIDFKPSLLKRFYAYSIKKWL-----VPCIACS-YIGYASMINLASKIDAGMI 165

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G          D+     ++   +   +D          + L      LG        
Sbjct: 166 VHGRSPEQMFRAYDEDVFSELVRAGLSSVKD-------LDLKSLYRGL--LG-------- 208

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI----LGRHN 257
            +  ++   + D  +      V+   + + V         E +IV    +     +G H 
Sbjct: 209 KIDEKLDKTLRDDVNRALFQDVKGDDFREFVAYFLYHPYDEKEIVAFLKENTSWSVGEH- 267

Query: 258 GIINY 262
              +Y
Sbjct: 268 -YNHY 271


>gi|212696015|ref|ZP_03304143.1| hypothetical protein ANHYDRO_00551 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677002|gb|EEB36609.1| hypothetical protein ANHYDRO_00551 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 511

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 42/197 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++  +SGGVDS++ A L+ +  G D+  +                        +A+ V 
Sbjct: 218 KMICGLSGGVDSTIAATLVHKAIGNDLQCIF--------------VDHGLLRKDEAKSVM 263

Query: 81  DT---INVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQ 135
           D    I ++  + D  + F               E P     +  N  +         ++
Sbjct: 264 DQYKEIGLNVKMVDASKEF--------LDLLKGVEDPEEKRKIIGNHFI--EVFEREAKK 313

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-CDLRFPLG 193
            G A  L  G        V + GK +  + +           +    +  L   +  PL 
Sbjct: 314 FGDAKYLVQG---TIYPDVIESGKGKGSVIKSHHN-------VGGLPEDMLFEGVVEPLR 363

Query: 194 DMKKESVRDLAREMGLD 210
           ++ K+ VR L   +G+ 
Sbjct: 364 ELFKDEVRALGESIGVP 380


>gi|163789070|ref|ZP_02183514.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159875734|gb|EDP69794.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 439

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 22/135 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
           + ++++A+SGG+DS V+A L  +          QL  +                 D    
Sbjct: 18  ESKLLIAISGGIDSVVLAHLCHQ---------FQLNFTLAHCNFNLRGEESNADEDFVLE 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           + D +NV               I  F +   A E         R +++     +  QL  
Sbjct: 69  LADQLNV------------EVFIQNFDTQTYADENKRSIQMAARELRYDWFTELAEQLKF 116

Query: 139 DVLATGHYIRSRLYV 153
           D + T H+    L  
Sbjct: 117 DYILTAHHADDNLET 131


>gi|330830484|ref|YP_004393436.1| amidotransferase [Aeromonas veronii B565]
 gi|328805620|gb|AEB50819.1| Amidotransferase [Aeromonas veronii B565]
          Length = 381

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A +  +     +G+   L++         +    + + D       +
Sbjct: 73  IIGLSGGLDSSYAAHIAVKK----MGLRPLLFHVDAGWNTDQAVGNIEKLVDG------L 122

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V +++E  R  V      ++     P   +  +    FS L    RQ G   +
Sbjct: 123 GLDLYTEVVNWDEMKRLQV------AFLRSGIPDQDLVQDAAF-FSGLYKFARQHGIKHI 175

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 176 ITGSNFSTECCREPEEWGGY 195


>gi|326921795|ref|XP_003207140.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like
           [Meleagris gallopavo]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARR 78
           R+   +SGG+DSS V A LLK          ++         +   G      D+  AR+
Sbjct: 252 RIGCLLSGGLDSSLVAAVLLK---------LMKEMNIKYPLQTFAIGM-ENSPDLLAARK 301

Query: 79  VCDTINVSHYVFDYEER 95
           V   I   H+   +   
Sbjct: 302 VAAHIGSEHHEVIFNSE 318


>gi|193213013|ref|YP_001998966.1| exsB protein [Chlorobaculum parvum NCIB 8327]
 gi|254764320|sp|B3QPB3|QUEC_CHLP8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|193086490|gb|ACF11766.1| exsB protein [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V+ +SGG+DS V  AL    G+++  +              G     +++   R++C
Sbjct: 1  MKAVLLVSGGMDSLVATALAHHHGFELAAMH----------VNYGQRTWQKELECFRQIC 50

Query: 81 DTINVS 86
          D   + 
Sbjct: 51 DHYGIE 56


>gi|71896717|ref|NP_001026148.1| asparagine synthetase [glutamine-hydrolyzing] [Gallus gallus]
 gi|82081799|sp|Q5ZJU3|ASNS_CHICK RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|53133342|emb|CAG32000.1| hypothetical protein RCJMB04_15l3 [Gallus gallus]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 22  RVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARR 78
           R+   +SGG+DSS V A LLK          ++         +   G      D+  AR+
Sbjct: 252 RIGCLLSGGLDSSLVAAVLLK---------LMKEMNIKYPLQTFAIGM-ENSPDLLAARK 301

Query: 79  VCDTINVSHYVFDYEER 95
           V   I   H+   +   
Sbjct: 302 VAAHIGSEHHEVIFNSE 318


>gi|460631|gb|AAA77671.1| asparagine synthetase [Rattus norvegicus]
 gi|460633|gb|AAA77672.1| asparagine synthetase [Rattus norvegicus]
          Length = 561

 Score = 44.4 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 20/97 (20%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVPYALQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEERF----RNAVIVPFASSY 108
           AR+V + I   H+   +         + VI P   +Y
Sbjct: 299 ARKVANYIGSEHHEVLFNSEEGIQSLDEVIFP-LETY 334


>gi|304407668|ref|ZP_07389319.1| argininosuccinate synthase [Paenibacillus curdlanolyticus YK9]
 gi|304343151|gb|EFM08994.1| argininosuccinate synthase [Paenibacillus curdlanolyticus YK9]
          Length = 411

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 44/210 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++V+A SGG+D+SV+   LK   YD  +I  T                    D  +A+ +
Sbjct: 5   KIVLAYSGGLDTSVILKWLKET-YDAEIIAFT-----------ADIGQKEELDGLEAKAL 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   Y+ D  E F +  I P           Y  G +    +   R V       +
Sbjct: 53  ATGAS-KVYIDDLTEEFASDFIYPMFQAGALYEGQYLLGTSIARPLIAKRMV------EI 105

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            R  GA  +A G         G+D + R  +         Q    +   + +    +FP 
Sbjct: 106 ARAEGATAIAHG-----ATGKGND-QVRFELTAAALAPEIQVIAPW---RNEEFRAQFP- 155

Query: 193 GDMKKESVRDLAREMGLDI---ADKSDSQD 219
           G      +   A + G+ +   A K  S D
Sbjct: 156 GR---AEMIAYAEKHGIPVTASASKPYSTD 182


>gi|291519650|emb|CBK74871.1| argininosuccinate synthase [Butyrivibrio fibrisolvens 16/4]
          Length = 406

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK + GY+VI   +              C  G+++     
Sbjct: 5   KVILAYSGGLD--TTAIIPWLKENYGYEVICCCI-------------DCGQGEELDGLSE 49

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQL 136
             +       Y+ D  + F +  IVP   + A  E              +  L+ + R+ 
Sbjct: 50  RAEASGATKLYIEDIVDDFCDNYIVPCVQAGAVYENKYLLGTAMARPGIAAKLVEIARKE 109

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 110 GATAICHG 117


>gi|253996737|ref|YP_003048801.1| argininosuccinate synthase [Methylotenera mobilis JLW8]
 gi|253983416|gb|ACT48274.1| argininosuccinate synthase [Methylotenera mobilis JLW8]
          Length = 406

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+SV+   L+ + Y    VT                  G+++  AR    
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDE-YKCEVVT-----------YTADLGQGEELEPARAKAK 53

Query: 82  TINVSHYVF-DYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
              V      D  E F    + P           Y  G +    +   R      L+ V 
Sbjct: 54  AAGVKEIFIDDVREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LIEVA 107

Query: 134 RQLGADVLATG 144
           R   AD ++ G
Sbjct: 108 RDTKADAISHG 118


>gi|154483148|ref|ZP_02025596.1| hypothetical protein EUBVEN_00849 [Eubacterium ventriosum ATCC
           27560]
 gi|149735956|gb|EDM51842.1| hypothetical protein EUBVEN_00849 [Eubacterium ventriosum ATCC
           27560]
          Length = 376

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 24/127 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV--- 79
           + V +SGG DS ++A L +          L+L+N      +      G    + + +   
Sbjct: 138 IAVCISGGKDSMLMAKLFQE---------LKLHNKFDFQVKFLVMDPGYSPANRQVIEEN 188

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              +N+   +      + + +     +   +     PC  C   ++   L S  +++G +
Sbjct: 189 ARRLNIPITI------YESDIFESVFNVEKS-----PCYLC-ARMRRGHLYSFAKEMGCN 236

Query: 140 VLATGHY 146
            +A GH+
Sbjct: 237 KIALGHH 243


>gi|118579482|ref|YP_900732.1| hypothetical protein Ppro_1049 [Pelobacter propionicus DSM 2379]
 gi|118502192|gb|ABK98674.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379]
          Length = 275

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 66/201 (32%), Gaps = 59/201 (29%)

Query: 24  VVAMSGGVDS----SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V+A SGGVDS    +V          DV+G       +  A     +    +++ +AR +
Sbjct: 27  VIAFSGGVDSTFLFAVAV--------DVLG------GNALAITASSATYPQRELLEAREL 72

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQL 136
              I   H     EE      I  F           P   C  C R + F  L  +  Q 
Sbjct: 73  ASLIGGRHREIASEELD----IPEF--------QDNPRDRCYYCKREL-FGKLREIAEQE 119

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194
           G   L  G  +       DD    R   R                  Q   +R PL +  
Sbjct: 120 GLPHLLDGSNL-------DDLNDHRPGRRA----------------AQELGVRSPLEEAG 156

Query: 195 MKKESVRDLAREMGLDIADKS 215
           + K+ +R L++ + L   +K 
Sbjct: 157 LTKDDIRRLSQALKLPTWNKP 177


>gi|284030550|ref|YP_003380481.1| NAD+ synthetase [Kribbella flavida DSM 17836]
 gi|283809843|gb|ADB31682.1| NAD+ synthetase [Kribbella flavida DSM 17836]
          Length = 590

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 18/87 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DSS+VAA+     G + V+GV                  +     DA  + 
Sbjct: 328 VLLGLSGGIDSSLVAAIACDAIGAEHVVGV-----------SNPSVYSSDHSKDDAAELA 376

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASS 107
               +++ V   +       + PF  +
Sbjct: 377 ARTGLNYRVVPIQPM-----VQPFLDT 398


>gi|193213507|ref|YP_001999460.1| GMP synthase [Chlorobaculum parvum NCIB 8327]
 gi|193086984|gb|ACF12260.1| GMP synthase, large subunit [Chlorobaculum parvum NCIB 8327]
          Length = 516

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 64/204 (31%), Gaps = 40/204 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D  VV  +SGGVDS+V A L+ +     IG  L          RK        
Sbjct: 216 EIKRVAGDSTVVCGISGGVDSTVAAVLVSKA----IGDKLHCVFVDNGLLRKDE------ 265

Query: 73  VYDARRVCDT---INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF 126
              A +V +    + +   + D  + F      V  P       G T +   + N     
Sbjct: 266 ---ATKVMEFLKPLGLKVTLADASDLFLGRLKGVASPEKKRKIIGRTFIRVFEENIH--- 319

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                   +           I S    G     +                +    ++   
Sbjct: 320 ------DEKFLVQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKL 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR + RE+G+ 
Sbjct: 362 KLIEPLRELFKDEVRAVGRELGIA 385


>gi|163735249|ref|ZP_02142684.1| NAD synthetase [Roseobacter litoralis Och 149]
 gi|161391463|gb|EDQ15797.1| NAD synthetase [Roseobacter litoralis Och 149]
          Length = 541

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGGVDS++VA +     G   +   +                + + + DA  V 
Sbjct: 275 KVLLGLSGGVDSALVATIAVDAFGAQNVRCVM----------LPSEYTSAESLEDAEAVA 324

Query: 81  DTINVSHYVFDYEE 94
             +   +      E
Sbjct: 325 KALGCHYDYVPITE 338


>gi|86356407|ref|YP_468299.1| asparagine synthetase (glutamine-hydrolyzing) protein [Rhizobium
           etli CFN 42]
 gi|86280509|gb|ABC89572.1| asparagine synthetase (glutamine-hydrolyzing) protein [Rhizobium
           etli CFN 42]
          Length = 613

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D+ V VA+SGG+DSS+VAAL  R   G  +   T+  Y  R  +  +G          A 
Sbjct: 255 DVPVAVALSGGIDSSLVAALTARHFPG-QLHAFTIG-YKGRPDTDERGF---------AA 303

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
            +   + +        E     VI  F    +A +TP+  +  
Sbjct: 304 TLAKELGIGFTEV---ELDTGTVIDSFPELMSAMDTPIGDIAA 343


>gi|71901606|ref|ZP_00683686.1| ExsB [Xylella fastidiosa Ann-1]
 gi|71728616|gb|EAO30767.1| ExsB [Xylella fastidiosa Ann-1]
          Length = 230

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V+ +SGG+DS+VV A+ +  G+ V  ++++                  ++  A R+ 
Sbjct: 2  KKAVILLSGGMDSAVVTAIAQSQGFMVHALSIRY-----------GQRHTSELDAAVRIA 50

Query: 81 DTIN-VSHYVFD 91
            +N V+H V D
Sbjct: 51 RALNVVAHKVVD 62


>gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
           345-E]
 gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
           345-E]
          Length = 484

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 41/231 (17%)

Query: 17  NPKDMRVVVAMSGGVDS---SVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
             K  ++++A+SGG DS    +    LKR +G+ +   T+                + ++
Sbjct: 21  WTKKDKILLAVSGGPDSLGLLLAMNELKRSEGFSIGCCTI---------DHHLRKESAEE 71

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           V    ++C+ + +   V D        V      S  + ET        R +++  L  +
Sbjct: 72  VIYVNKICEELGIDCKVIDI------NVKERQEESNKSCETAA------RELRYEALKEI 119

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             +     +A  H+   +            + R   +    +       ++       P 
Sbjct: 120 FTKYKYTKIALAHHSDDQAE-----TVIHRLIRGGGM----TGLSGMLPKR--EYFIRPF 168

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK----YFDVVKRINAGI 239
             + K+ ++    E     A    + DI  V + K        +K+ N  I
Sbjct: 169 LAVTKKEIQAYIDEFPYIPAHDKTN-DIPDVTRNKIRLQLIPYLKKYNPNI 218


>gi|304408668|ref|ZP_07390289.1| exsB protein [Shewanella baltica OS183]
 gi|307305497|ref|ZP_07585245.1| exsB protein [Shewanella baltica BA175]
 gi|304352489|gb|EFM16886.1| exsB protein [Shewanella baltica OS183]
 gi|306911800|gb|EFN42225.1| exsB protein [Shewanella baltica BA175]
          Length = 249

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 68/218 (31%), Gaps = 36/218 (16%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M   E     S  L   P   + VV  SGG DS+           +V G+T         
Sbjct: 1   MFYGEVKSFMSTSLVSKPLASKAVVVFSGGQDSTTCLIQALTQYDEVHGITFDY------ 54

Query: 61  SKRKGSCCAGQDVYDARRVCDTINV-SHYVFD--------YEERFRNAV-IVPFASSYAA 110
                     +++  A+ +   + + SH V D             R+A+ +         
Sbjct: 55  -----GQRHREEIEVAKSLAKRLKITSHKVMDVTLLNELAISALTRDAIPVSHELMENGL 109

Query: 111 GETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
             T +P     R + F  L      QLGA+ + TG           D       CR  D 
Sbjct: 110 PNTFVP----GRNILFLTLAGIYAYQLGAEAIITG-------VCETDFSGYPD-CR-NDF 156

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
            +     L     +QL  +  PL  + K     LA + 
Sbjct: 157 VKAMESALVQGMDKQL-KIITPLMWLNKAQTWALADKY 193


>gi|283955562|ref|ZP_06373057.1| hypothetical protein C1336_000020091 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283793023|gb|EFC31797.1| hypothetical protein C1336_000020091 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 251

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|219870478|ref|YP_002474853.1| thiamine biosynthesis protein ThiI [Haemophilus parasuis SH0165]
 gi|219690682|gb|ACL31905.1| thiamine biosynthesis protein ThiI/thiamine biosynthesis ATP
           pyrophosphatase [Haemophilus parasuis SH0165]
          Length = 483

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSSSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKTSD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  I+   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIIEEEGNF 367


>gi|157414431|ref|YP_001481687.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385395|gb|ABV51710.1| hypothetical protein C8J_0111 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747075|gb|ADN90345.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315931512|gb|EFV10479.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 251

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|148926916|ref|ZP_01810594.1| hypothetical protein Cj8486_0114 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844493|gb|EDK21601.1| hypothetical protein Cj8486_0114 [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 255

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 31  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 77

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 78  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 128

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 129 KGFNKLAIAHHL 140


>gi|121612303|ref|YP_999842.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004813|ref|ZP_02270571.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250191|gb|EAQ73149.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 251

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|86151330|ref|ZP_01069545.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315123720|ref|YP_004065724.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841677|gb|EAQ58924.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017442|gb|ADT65535.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 253

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|71275956|ref|ZP_00652238.1| ExsB [Xylella fastidiosa Dixon]
 gi|71901398|ref|ZP_00683490.1| ExsB [Xylella fastidiosa Ann-1]
 gi|170730260|ref|YP_001775693.1| transcriptional regulator [Xylella fastidiosa M12]
 gi|254764394|sp|B0U2I4|QUEC_XYLFM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|71163189|gb|EAO12909.1| ExsB [Xylella fastidiosa Dixon]
 gi|71728831|gb|EAO30970.1| ExsB [Xylella fastidiosa Ann-1]
 gi|167965053|gb|ACA12063.1| transcriptional regulator [Xylella fastidiosa M12]
          Length = 230

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V+ +SGG+DS+VV A+ +  G+ V  ++++                  ++  A R+ 
Sbjct: 2  KKAVILLSGGMDSAVVTAIAQSQGFMVHALSIRY-----------GQRHTSELDAAVRIA 50

Query: 81 DTIN-VSHYVFD 91
            +N V+H V D
Sbjct: 51 RALNVVAHKVVD 62


>gi|57237125|ref|YP_178137.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|86153858|ref|ZP_01072061.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|57165929|gb|AAW34708.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|85842819|gb|EAQ60031.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|284925411|gb|ADC27763.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315057558|gb|ADT71887.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 251

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|86149582|ref|ZP_01067812.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597177|ref|ZP_01100412.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561799|ref|YP_002343578.1| hypothetical protein Cj0118 [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839850|gb|EAQ57109.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190238|gb|EAQ94212.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359505|emb|CAL34289.1| conserved hypothetical protein Cj0118 [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926944|gb|EFV06306.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929914|gb|EFV09073.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 251

 Score = 44.4 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|290961002|ref|YP_003492184.1| carbon-nitrogen ligase [Streptomyces scabiei 87.22]
 gi|260650528|emb|CBG73644.1| putative carbon-nitrogen ligase [Streptomyces scabiei 87.22]
          Length = 584

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAAL     G  +V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALVAALACDALGAQNVYGVSM-----------PSKYSSDHSKGDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               ++         F
Sbjct: 377 RRTGLNFRTISIAPMF 392


>gi|71908644|ref|YP_286231.1| argininosuccinate synthase [Dechloromonas aromatica RCB]
 gi|119361268|sp|Q47BM0|ASSY_DECAR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|71848265|gb|AAZ47761.1| argininosuccinate synthase [Dechloromonas aromatica RCB]
          Length = 468

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 5   KKVVLAYSGGLDTSVILKWLQDV-YKCEVVTF-----------TADLGQGEELEPARAKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     Y+ D  E F    + P           Y  G +    +   R      L+
Sbjct: 53  LKAGIKPKNIYIDDVREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKR------LI 106

Query: 131 SVTRQLGADVLATG 144
            +  + GAD +  G
Sbjct: 107 EIVNETGADAICHG 120


>gi|28198846|ref|NP_779160.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182681543|ref|YP_001829703.1| exsB protein [Xylella fastidiosa M23]
 gi|81438814|sp|Q87CW1|QUEC_XYLFT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764393|sp|B2I4Y4|QUEC_XYLF2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|28056937|gb|AAO28809.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182631653|gb|ACB92429.1| exsB protein [Xylella fastidiosa M23]
 gi|307579970|gb|ADN63939.1| exsB protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 230

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V+ +SGG+DS+VV A+ +  G+ V  ++++                  ++  A R+ 
Sbjct: 2  KKAVILLSGGMDSAVVTAIAQSQGFMVHALSIRY-----------GQRHTSELDAAVRIA 50

Query: 81 DTIN-VSHYVFD 91
            +N V+H V D
Sbjct: 51 RALNVVAHKVVD 62


>gi|317056314|ref|YP_004104781.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7]
 gi|315448583|gb|ADU22147.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7]
          Length = 444

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 28/131 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  R+++ +SGG DS   A L  L   GYD+    +  +  R     +      +     
Sbjct: 21  KGERLLIGLSGGADS--AALLLCLHELGYDICACHV-NHCIRGEEADRDQHFCEE----- 72

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +C  +N+   V          V+     +Y     P+   +  R +++  L    +++
Sbjct: 73  --LCKGLNIDITV---------KVVD--VPAYCRAN-PVSEEEGARLLRYKAL----QEI 114

Query: 137 GADVLATGHYI 147
            AD + T H +
Sbjct: 115 NADKICTAHNL 125


>gi|29336962|sp|Q9K4Y8|ASSY_MORAB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|8671272|emb|CAB95023.1| argininosuccinate synthetase [Moritella abyssi]
          Length = 404

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 27/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYD---VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +VVVA SGG+D+SV+   L+ + YD   ++ +              G      +  +A+
Sbjct: 6   KKVVVAYSGGLDTSVILPWLQEN-YDNCEIVALF---------VADVGQGAEELEGIEAK 55

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            +    +   YV D ++      I P          +Y  G +          V      
Sbjct: 56  ALASGAS-ECYVVDLKDELVENYIYPTLKTGAVYEGTYLLGTSMARQSIAKAQV------ 108

Query: 131 SVTRQLGADVLATG 144
            + R++GAD L  G
Sbjct: 109 EIARKVGADALCHG 122


>gi|89067439|ref|ZP_01154952.1| argininosuccinate synthase [Oceanicola granulosus HTCC2516]
 gi|89047008|gb|EAR53062.1| argininosuccinate synthase [Oceanicola granulosus HTCC2516]
          Length = 406

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           P   +VV+A SGG+D+S++   L+   G +V+  T                  G+++  A
Sbjct: 2   PAPKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFT-------------ADLGQGEELEPA 48

Query: 77  RRVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE 112
           R+  + +   S ++ D  E F    + P   + A  E
Sbjct: 49  RKKAEMMGASSIHIEDLREEFVRDFVFPMFRANALYE 85


>gi|229087209|ref|ZP_04219356.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-44]
 gi|228696090|gb|EEL48928.1| thiamine biosynthesis protein thiI [Bacillus cereus Rock3-44]
          Length = 403

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAFLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C  +  + ++  + E
Sbjct: 235 CKRL--TLHLVPFTE 247


>gi|169335606|ref|ZP_02862799.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258344|gb|EDS72310.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM
           17244]
          Length = 234

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 28/140 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ- 71
           D +   ++  + VA+SGG DS     LLK          L+ +      K K +  +   
Sbjct: 14  DYNMINENEHICVAVSGGKDS---MILLKA---------LRTFMYFSPVKFKLTAISIDV 61

Query: 72  -----DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                D    R  C  +++   +       +  +               PC  C++ +K 
Sbjct: 62  GFDNMDFEKLRVFCSDLDIPLKIV------KTDIAKIVFDERKE---KNPCSLCSK-MKR 111

Query: 127 SDLLSVTRQLGADVLATGHY 146
           + L      +G++ +A GH+
Sbjct: 112 AALNETALSIGSNKIAYGHH 131


>gi|160875274|ref|YP_001554590.1| queuosine biosynthesis protein QueC [Shewanella baltica OS195]
 gi|189029312|sp|A9L185|QUEC_SHEB9 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|160860796|gb|ABX49330.1| exsB protein [Shewanella baltica OS195]
 gi|315267468|gb|ADT94321.1| exsB protein [Shewanella baltica OS678]
          Length = 240

 Score = 44.4 bits (104), Expect = 0.037,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 66/208 (31%), Gaps = 36/208 (17%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           S  L   P   + VV  SGG DS+           +V G+T                   
Sbjct: 2   STSLVSKPLASKAVVVFSGGQDSTTCLIQALTQYDEVHGITFDY-----------GQRHR 50

Query: 71  QDVYDARRVCDTINV-SHYVFD--------YEERFRNAV-IVPFASSYAAGETPLPCVDC 120
           +++  A+ +   + + SH V D             R+A+ +           T +P    
Sbjct: 51  EEIEVAKSLAKRLKITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVP---- 106

Query: 121 NRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            R + F  L      QLGAD + TG           D       CR  D  +     L  
Sbjct: 107 GRNILFLTLAGIYAYQLGADAIITG-------VCETDFSGYPD-CR-NDFVKAMESALVQ 157

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREM 207
              +QL  +  PL  + K     LA + 
Sbjct: 158 GMDKQL-KIITPLMWLNKAQTWALADKY 184


>gi|303286641|ref|XP_003062610.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456127|gb|EEH53429.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 758

 Score = 44.4 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V +++SGGVDS  +A +LKR        G+DV+ + +  Y++R  S  +     G     
Sbjct: 279 VGISLSGGVDSMALAVILKRLSRDASYGGFDVVAMHID-YDNRPESGVEADFVRGW---- 333

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134
               CD + +              V+    +    G TP    +  +R +++     V +
Sbjct: 334 ----CDRMGI------------ECVVRK-IAEVTRGVTPREQYEAESRAIRYGFYKDVAK 376

Query: 135 QLGADVLATGHY 146
                 +  GH+
Sbjct: 377 THAFPAVFVGHH 388


>gi|120437085|ref|YP_862771.1| asparagine synthetase B [Gramella forsetii KT0803]
 gi|117579235|emb|CAL67704.1| asparagine synthetase [glutamine-hydrolyzing] [Gramella forsetii
           KT0803]
          Length = 536

 Score = 44.4 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 30/172 (17%)

Query: 25  VAMSGGVDSSVV---AALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V +SGG+DSS+    AA L               +L++       +       D+  AR+
Sbjct: 224 VLLSGGLDSSLTSSIAARLMEGSGQ---------KLHSFSIGLDAE-----APDLIAARK 269

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYA-------AGETPL---PCVDCNRTVKFSD 128
           V + +   H+   +  +    ++                  TP+         + +K   
Sbjct: 270 VAEFLGTEHHEIHFTVKEGIEILEKLVWHLETYDVTSIRASTPMYFLSKAIAEKGIKVVL 329

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
               + ++    L   +    + +  +  +R + +     L  D+S      
Sbjct: 330 SGEGSDEILGGYLYFKNAPSPKEFQKETIRRVQRLATADCLRADKSTMAHGL 381


>gi|157813140|gb|ABV81315.1| putative GMP synthetase [Narceus americanus]
          Length = 197

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 17/84 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + +V++ +SGGVDS+V AAL    LK D   +I + +     RK   R+           
Sbjct: 43  NCKVLMLLSGGVDSTVCAALMWKALKED--QIIAIHIDNGFMRKEESRQ----------- 89

Query: 76  ARRVCDTINVSHYVFDYEERFRNA 99
             ++   I +     + +  F  A
Sbjct: 90  VEQMLHKIGLKVTALNCKHTFSTA 113


>gi|157363281|ref|YP_001470048.1| thiamine biosynthesis protein [Thermotoga lettingae TMO]
 gi|157313885|gb|ABV32984.1| thiamine biosynthesis protein [Thermotoga lettingae TMO]
          Length = 301

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  +++VA+SGG DSSV   +LK+ GY   G+ + L                 +    +
Sbjct: 45  NKSEKLLVAVSGGKDSSVAWYVLKKLGYTTSGLFIDL-------------GTENNTEIVK 91

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++ +       + + ++ F    +    S      T   C    R +    +  V  +  
Sbjct: 92  KISEKTGEELLIVNGKQYFGGLTVAE-ISRIVKRPTCSICGLIRRYI----MNKVAYEKN 146

Query: 138 ADVLATGHYI 147
            D + TGH +
Sbjct: 147 FDAVITGHNL 156


>gi|159900653|ref|YP_001546900.1| argininosuccinate synthase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893692|gb|ABX06772.1| Argininosuccinate synthase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 403

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK   G +V+     L      S  +      + +      C
Sbjct: 8   KVVLAYSGGLDTSVIVPWLKEHYGCEVVCYCANLGQDDDLSGVE-----AKAIASGASAC 62

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASS-------YAAGET-PLPCVDCNRTVKFSDLLSV 132
                  YV D  E F    + P   S       Y  G +   P +   +       +  
Sbjct: 63  -------YVEDLREEFVRDFLFPMLQSGATYERTYLLGTSIARPLIARGQ-------VQT 108

Query: 133 TRQLGADVLATG 144
             ++GAD L+ G
Sbjct: 109 ALKVGADALSHG 120


>gi|72383154|ref|YP_292509.1| argininosuccinate synthase [Prochlorococcus marinus str. NATL2A]
 gi|119361305|sp|Q46I72|ASSY_PROMT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|72003004|gb|AAZ58806.1| argininosuccinate synthase [Prochlorococcus marinus str. NATL2A]
          Length = 400

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  +VV+A SGGVD+SV    LK + Y    VI     L    +  + K    +      
Sbjct: 3   KANKVVLAYSGGVDTSVCIPYLKEE-YGVEHVIAFAADLGQGDELDEIKKKAISAGASQ- 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA--AGETPLPCVDCNRTVKFSDLLSVT 133
                  I       +  + F      P   S A   G  PL        +    L+ + 
Sbjct: 61  -----SLIG------NLVKPFIEDFAFPAIRSNALYQGRYPLSTALARPLIA-KKLVEIA 108

Query: 134 RQLGADVLATG 144
           R+L AD +A G
Sbjct: 109 RELNADGVAHG 119


>gi|238580364|ref|XP_002389263.1| hypothetical protein MPER_11632 [Moniliophthora perniciosa FA553]
 gi|215451338|gb|EEB90193.1| hypothetical protein MPER_11632 [Moniliophthora perniciosa FA553]
          Length = 63

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
          + K  RV++A SGG+D+S + A L   GY+V  V +
Sbjct: 2  SAKSGRVLLAYSGGLDTSCILAWLIEQGYEV-YVFM 36


>gi|149194505|ref|ZP_01871601.1| ExsB [Caminibacter mediatlanticus TB-2]
 gi|149135249|gb|EDM23729.1| ExsB [Caminibacter mediatlanticus TB-2]
          Length = 221

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 39/206 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + VV +SGG+DS+    + K++GY++I +              G     +++     +C
Sbjct: 2   KKAVVILSGGMDSTTATFIAKKEGYEIIPLHF----------NYGQRTEKRELKAFNDIC 51

Query: 81  DTINVS-HYVFDYEERFRNAV-----IVPFASSYAAGETPLPCVDCNRTVKF--SDLL-- 130
           D + +   YV D    F   +     +         G  P   +     V F     L  
Sbjct: 52  DYLELKNRYVIDI--PFFKQIGASALVDENIEVPTDGIKPGIPI---TYVPFRNGIFLSI 106

Query: 131 --SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL--FATTQQQLC 186
             +V  + GA+ +  G        V +D       CR  +  +     +      Q Q+ 
Sbjct: 107 ATAVAEKEGAEAIYIG-------VVEEDSSGYPD-CR-EEFIKSIEDAINKGTKPQTQI- 156

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
            ++ PL  +KKE +   A E+G+ + 
Sbjct: 157 KIKTPLIHLKKEDIVKKAVEVGVPLE 182


>gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
 gi|307300474|ref|ZP_07580254.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C]
 gi|307318339|ref|ZP_07597774.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83]
 gi|61216708|sp|Q92JY3|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
 gi|306896021|gb|EFN26772.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83]
 gi|306904640|gb|EFN35224.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C]
          Length = 453

 Score = 44.0 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 36/133 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-------- 73
           R++VA+SGG DS     LL       + +   +    +      +C     +        
Sbjct: 21  RILVAVSGGSDS---MGLL-------VALHSAIAADERRGFSLAACTVDHALRPQSACEA 70

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSV 132
            D    C  + ++H +                     G  P   +      K +  L   
Sbjct: 71  EDVAAFCAALGIAHRI-----------------CRWEGAKPSTGIQAAARNKRYELLAEA 113

Query: 133 TRQLGADVLATGH 145
              LGAD +A GH
Sbjct: 114 ADALGADCIAIGH 126


>gi|167770401|ref|ZP_02442454.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM
           17241]
 gi|167667408|gb|EDS11538.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM
           17241]
          Length = 236

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 32/204 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDV---IGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V V +SGG DS  VA L    G  V   IG++  L   +  +          D      +
Sbjct: 24  VAVGVSGGKDS--VALLAGLAG--VRRFIGISFTL---KAITLDNQFGGIETDYGPIAAL 76

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+ + V +     +      +I  F     +     PC  C   ++   L    +  G +
Sbjct: 77  CERLGVEYI---LKRTDIGRII--FDERNES----NPCSLC-ARMRRGLLHDTAKTNGCN 126

Query: 140 VLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
            +A GH+       ++ +     RI C            +   +++ L  +R PL    +
Sbjct: 127 KIALGHHYNDAVETFLMNLFNEGRIGCFSP---------VTYLSRKDLTMVR-PLVFATE 176

Query: 198 ESVRDLAREMGLDIADKSDSQDIC 221
             +R+     GL +   +   D C
Sbjct: 177 REIRNAVNRAGLPVVKSACPVDGC 200


>gi|253698992|ref|YP_003020181.1| PP-loop domain protein [Geobacter sp. M21]
 gi|251773842|gb|ACT16423.1| PP-loop domain protein [Geobacter sp. M21]
          Length = 268

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 58/201 (28%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYD------VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +VA SGGVDS+    LLK   +D      V+ +T                    ++ +A+
Sbjct: 22  LVAFSGGVDST---FLLKAA-FDTLSPERVLAIT-----------ATSPTYPESELAEAK 66

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQL 136
            +   I             +  V+            P   C  C   + F       R+ 
Sbjct: 67  LLATRIGAR----------QELVVSNELEIPGFSHNPKDRCYHCKSEL-FRICTEKAREN 115

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GD 194
           G   +A G          D G  R       +L                  +R PL    
Sbjct: 116 GLAFVADG------SNTDDLGDYRPGRTAAREL-----------------KVRSPLLEAG 152

Query: 195 MKKESVRDLAREMGLDIADKS 215
           + K  +R+L+R +GL   DK 
Sbjct: 153 LSKGDIRELSRGLGLPTWDKQ 173


>gi|325283488|ref|YP_004256029.1| exsB protein [Deinococcus proteolyticus MRP]
 gi|324315297|gb|ADY26412.1| exsB protein [Deinococcus proteolyticus MRP]
          Length = 233

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R VV +SGG+DSS V  L  R G +   ++ +                  ++  A ++
Sbjct: 6  NPRAVVLLSGGLDSSTVLGLAVRSGLEATALSFRY-----------GQRHTVELERAAQI 54

Query: 80 CDTINVSHYVFD 91
                +H V D
Sbjct: 55 AAHFGAAHRVVD 66


>gi|317055588|ref|YP_004104055.1| PP-loop domain-containing protein [Ruminococcus albus 7]
 gi|315447857|gb|ADU21421.1| PP-loop domain protein [Ruminococcus albus 7]
          Length = 294

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 34/136 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  R+ V +SGG DS ++A  +KR   Y     +V+ + +                  ++
Sbjct: 39  EGDRIAVCISGGKDSMLMALCMKRLQRYSKVPFEVVFLVM-----DPGYNEINYQKIVEN 93

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLL 130
                   +T+ +   V      F+  +         +       PC  C   ++   L 
Sbjct: 94  -------AETLEIPIQV------FKTGIFDAVAKVDEH-------PCYLC-ARMRRGHLY 132

Query: 131 SVTRQLGADVLATGHY 146
              ++LG + +A GH+
Sbjct: 133 KTAKELGCNKIALGHH 148


>gi|257054547|ref|YP_003132379.1| GMP synthase [Saccharomonospora viridis DSM 43017]
 gi|256584419|gb|ACU95552.1| GMP synthase (glutamine-hydrolyzing) [Saccharomonospora viridis DSM
           43017]
          Length = 514

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 66/201 (32%), Gaps = 42/201 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-- 77
           D   +  +SGGVDS+V AAL++R     IG         + +         +    A+  
Sbjct: 214 DGHAICGLSGGVDSAVAAALVQRA----IG--------DRLTCVFVDHGLLRAGERAQVE 261

Query: 78  --RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              V  T  V     D  ERF +A          AG T     +  R +   + + V  Q
Sbjct: 262 RDFVAAT-GVKLVTVDASERFLSA---------LAGVT---DPEQKRKIIGREFIRVFEQ 308

Query: 136 LGADVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
              DV A G             V + G             +   + +       L     
Sbjct: 309 AARDVKAAGDVEFLVQGTLYPDVVESGGG-----AGTSNIKSH-HNVGGLPDD-LQFTLV 361

Query: 191 -PLGDMKKESVRDLAREMGLD 210
            PL  + K+ VR +  E+GL 
Sbjct: 362 EPLRMLFKDEVRRVGLELGLP 382


>gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
 gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
 gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 480

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SH 72

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 73  EDLQFVQDLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 121 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 171

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 172 IRPLLGVTKEEIVDYCNKLNL 192


>gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
 gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
          Length = 476

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 20  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SH 68

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 69  EDLQFVQDLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 117 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 167

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 168 IRPLLGVTKEEIVDYCNKLNL 188


>gi|30261440|ref|NP_843817.1| exsB protein [Bacillus anthracis str. Ames]
 gi|47526629|ref|YP_017978.1| ExsB family transcriptional regulator [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49184274|ref|YP_027526.1| exsB protein [Bacillus anthracis str. Sterne]
 gi|165870370|ref|ZP_02215025.1| exsB protein [Bacillus anthracis str. A0488]
 gi|167634318|ref|ZP_02392639.1| exsB protein [Bacillus anthracis str. A0442]
 gi|167639318|ref|ZP_02397590.1| exsB protein [Bacillus anthracis str. A0193]
 gi|170686660|ref|ZP_02877880.1| exsB protein [Bacillus anthracis str. A0465]
 gi|170706321|ref|ZP_02896782.1| exsB protein [Bacillus anthracis str. A0389]
 gi|177651440|ref|ZP_02934229.1| exsB protein [Bacillus anthracis str. A0174]
 gi|190568037|ref|ZP_03020947.1| exsB protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035303|ref|ZP_03102708.1| exsB protein [Bacillus cereus W]
 gi|218902547|ref|YP_002450381.1| exsB protein [Bacillus cereus AH820]
 gi|227815813|ref|YP_002815822.1| exsB protein [Bacillus anthracis str. CDC 684]
 gi|229603244|ref|YP_002865853.1| exsB protein [Bacillus anthracis str. A0248]
 gi|254682497|ref|ZP_05146358.1| exsB protein [Bacillus anthracis str. CNEVA-9066]
 gi|254726160|ref|ZP_05187942.1| exsB protein [Bacillus anthracis str. A1055]
 gi|254733913|ref|ZP_05191627.1| exsB protein [Bacillus anthracis str. Western North America
          USA6153]
 gi|254740397|ref|ZP_05198088.1| exsB protein [Bacillus anthracis str. Kruger B]
 gi|254753787|ref|ZP_05205822.1| exsB protein [Bacillus anthracis str. Vollum]
 gi|254758884|ref|ZP_05210911.1| exsB protein [Bacillus anthracis str. Australia 94]
 gi|81582971|sp|Q81TC7|QUEC_BACAN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764300|sp|C3P4F6|QUEC_BACAA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764301|sp|C3LAL0|QUEC_BACAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764302|sp|B7JFS4|QUEC_BACC0 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|30255294|gb|AAP25303.1| protein ExsB [Bacillus anthracis str. Ames]
 gi|47501777|gb|AAT30453.1| exsB protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178201|gb|AAT53577.1| exsB protein [Bacillus anthracis str. Sterne]
 gi|164713865|gb|EDR19387.1| exsB protein [Bacillus anthracis str. A0488]
 gi|167512757|gb|EDR88131.1| exsB protein [Bacillus anthracis str. A0193]
 gi|167530206|gb|EDR92932.1| exsB protein [Bacillus anthracis str. A0442]
 gi|170128855|gb|EDS97721.1| exsB protein [Bacillus anthracis str. A0389]
 gi|170669183|gb|EDT19926.1| exsB protein [Bacillus anthracis str. A0465]
 gi|172082718|gb|EDT67781.1| exsB protein [Bacillus anthracis str. A0174]
 gi|190560771|gb|EDV14746.1| exsB protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991980|gb|EDX55943.1| exsB protein [Bacillus cereus W]
 gi|218536698|gb|ACK89096.1| exsB protein [Bacillus cereus AH820]
 gi|227003186|gb|ACP12929.1| protein ExsB [Bacillus anthracis str. CDC 684]
 gi|229267652|gb|ACQ49289.1| exsB protein [Bacillus anthracis str. A0248]
          Length = 220

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+           +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAIEQFAEVEAVTF-NYNQR--HKLEIDC--------AVE 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H V D  
Sbjct: 51 IAKELGIKHTVLDMS 65


>gi|21704170|ref|NP_663557.1| cytoplasmic tRNA 2-thiolation protein 1 [Mus musculus]
 gi|81879991|sp|Q99J10|CTU1_MOUSE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|13543164|gb|AAH05752.1| ATP binding domain 3 [Mus musculus]
 gi|74199268|dbj|BAE33164.1| unnamed protein product [Mus musculus]
          Length = 420

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G+TL L     A            +   R     
Sbjct: 54  VAVGASGGKDSTVLAHVLRELAPR-LGITLHL----VAVDEGIGGYRDAALEAVRSQAAR 108

Query: 83  INVSHYVFDYEERF----RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +   +  YE+ F     +AV     S+  +G +   C  C   ++   L    R +GA
Sbjct: 109 WELPLTIVAYEDLFGGWTMDAVAR---STAGSGRSRSCCTFCG-VLRRRALEEGARLVGA 164

Query: 139 DVLATGHYI 147
             + TGH  
Sbjct: 165 THIVTGHNA 173


>gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
 gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
 gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
 gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
          Length = 480

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SH 72

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 73  EDLQFVQDLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 121 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 171

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 172 IRPLLGVTKEEIVDYCNKLNL 192


>gi|332043980|gb|EGI80175.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 438

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 26/138 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-- 76
           K  ++++A+SGG+DS V+  L  +             N   A           D  +A  
Sbjct: 17  KKAKILIAVSGGLDSVVLTHLCSKL----------NLNIALAHCNFNLRENESDTDEAFV 66

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
             +  T+++             A +  F   +YA  E         RT++++    + RQ
Sbjct: 67  LELAKTLDI------------EAFVQHFNTEAYAKAE-KSSIQMAARTLRYNWFFDLARQ 113

Query: 136 LGADVLATGHYIRSRLYV 153
           L  D + T H+    L  
Sbjct: 114 LQFDYILTAHHADDNLET 131


>gi|255505459|ref|ZP_05346248.3| PP-loop family protein [Bryantella formatexigens DSM 14469]
 gi|255267760|gb|EET60965.1| PP-loop family protein [Bryantella formatexigens DSM 14469]
          Length = 268

 Score = 44.0 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  R+ V +SGG DS  +   L   G        + +     +   G         +A  
Sbjct: 14  EGDRIAVGISGGKDSLTLLYAL--QGLR--RFYPKHFELEAVTVDLGHPGFDTTAIEA-- 67

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C  + V + V   +      V      S        PC  C +  K   L  V +  G 
Sbjct: 68  LCHELEVPYTVV--KTEIAAIVFEQRKES-------NPCSLCAKMRK-GALNDVVKGHGC 117

Query: 139 DVLATGHY 146
           + +A  H+
Sbjct: 118 NKVAYAHH 125


>gi|315652006|ref|ZP_07905007.1| argininosuccinate synthase [Eubacterium saburreum DSM 3986]
 gi|315485653|gb|EFU76034.1| argininosuccinate synthase [Eubacterium saburreum DSM 3986]
          Length = 408

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK    YDVI   +   +  + ++  G     +       
Sbjct: 5   KVVLAYSGGLD--TTAIIPWLKEHFNYDVICCCI---DCGQGNELDGLEERAKLSG---- 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
             + +    Y+ +  + F +  IVP           Y  G +        R      L+ 
Sbjct: 56  -AEKL----YIINMIDEFCDEYIVPCVQAGAVYENKYLLGTSMA------RPGIAKKLVE 104

Query: 132 VTRQLGADVLATG 144
           V R+ GA  +  G
Sbjct: 105 VARKEGAVAICHG 117


>gi|310828212|ref|YP_003960569.1| thiamine biosynthesis/tRNA modification protein ThiI [Eubacterium
           limosum KIST612]
 gi|308739946|gb|ADO37606.1| thiamine biosynthesis/tRNA modification protein ThiI [Eubacterium
           limosum KIST612]
          Length = 385

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 42/233 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +  + +SGG+DS V   ++ + G ++IGV         +          + +  A+ V  
Sbjct: 175 KTALLLSGGIDSPVAGYMMAKRGVELIGVYFH------SFPFTSDRAKDKVIDLAKIVSG 228

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               V+ YV  + E  +  ++           T    +   R +       + R+ GA  
Sbjct: 229 YCGKVTLYVVPFTEI-QTKIVEVCPE---RQTT----IIIRRYM-MRIAQEIARRNGAMS 279

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L TG  +        +G          +   D   F              PL  M K+ +
Sbjct: 280 LTTGESLGQVASQTQEG------LGATNAVVDLPVFR-------------PLIGMDKQEI 320

Query: 201 RDLAREMGLDIADKSDSQDIC--FVQQG-----KYFDVVKRINAGIALEGDIV 246
             +A  +G         +D C  FV +      K   VVK       + G ++
Sbjct: 321 VAIAERIGTFETSILPYEDCCTIFVPKHPETKPKLEAVVKSERPMEEIAGPMI 373


>gi|169334697|ref|ZP_02861890.1| hypothetical protein ANASTE_01100 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257435|gb|EDS71401.1| hypothetical protein ANASTE_01100 [Anaerofustis stercorihominis DSM
           17244]
          Length = 405

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++V+A SGG+D+S +   LK + YD   V     +  +    +      + +      
Sbjct: 2   KDKIVLAYSGGLDTSTIVPWLKNN-YDCE-VHAVCVDVGQVDDNEKPDLEKRAIEYG--- 56

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
            D+I++     D  E   N  I P   S    E          R +    L+   R+LGA
Sbjct: 57  ADSIDI----IDATEELVNDYIFPMLKSGGKYENKYLLGTSIARPLISKILVDKARELGA 112

Query: 139 DVLATG 144
           + +  G
Sbjct: 113 NCICHG 118


>gi|66505934|ref|XP_397328.2| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Apis
           mellifera]
          Length = 343

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
               +V +  SGG DS+V+A +LK   + Y   G+ L L +  +      +      +  
Sbjct: 48  KSGDKVAIGASGGKDSTVLAYVLKTLNNKYQ-YGIDLFLLSIDEG----ITGYRDDSLKT 102

Query: 76  ARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            ++  +   +   +  Y+E +     +    +          C  C    +   L     
Sbjct: 103 VQQNKNDYGLPLKILSYKELYGWT--MDEIVAEIGK---KNNCTFCGVFRR-QALDRGAA 156

Query: 135 QLGADVLATGHYI 147
            LG D +ATGH  
Sbjct: 157 LLGVDCIATGHNA 169


>gi|25147557|ref|NP_741864.1| hypothetical protein M02D8.4 [Caenorhabditis elegans]
 gi|1086745|gb|AAA82381.1| Asparagine synthetase protein 2, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 567

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 34/180 (18%)

Query: 19  KDMRVVVAMSGGVD----SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D  + V +SGG+D    SS+ +  +KR G       + ++     S   G      DV 
Sbjct: 228 SDAPIGVLLSGGLDSSLVSSIASREMKRRG-------MAVH-----SFSIGVDHNSPDVV 275

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR+V   I  +H+ F +        +        + +  +  +  +  + F  L    R
Sbjct: 276 AARKVAKFIGTTHHEFYFSIEEGIKNLRKLIWHLESYD--VTSIRASTPMYF--LSEEIR 331

Query: 135 QL---------GADVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFAT 180
           +L         GAD +  G+         +D ++        +     L  D+S    + 
Sbjct: 332 KLGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSV 391


>gi|329765674|ref|ZP_08257244.1| argininosuccinate synthase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137842|gb|EGG42108.1| argininosuccinate synthase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 399

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++A SGG+D+SVV   L+ + Y  DVI VT                  G D         
Sbjct: 6   ILAFSGGLDTSVVVKYLQEE-YDMDVITVT-------------VDVGQGDDQRKIEAKAK 51

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC--NRTVKFSDLLSVTRQLGA 138
            + V  HY  D  + F    I P   + A  +    C+     R +    +L + ++   
Sbjct: 52  KLGVKKHYNIDARKEFVEKFIFPSIKANALYQKKY-CLATALARPLIAEKVLEIAKKEKV 110

Query: 139 DVLATG 144
             LA G
Sbjct: 111 TSLAHG 116


>gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 430

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 20  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SH 68

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 69  EDLQFVQDLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 117 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 167

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 168 IRPLLGVTKEEIVDYCNKLNL 188


>gi|261880480|ref|ZP_06006907.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Prevotella bergensis DSM 17361]
 gi|270332819|gb|EFA43605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Prevotella bergensis DSM 17361]
          Length = 455

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 24 VVAMSGGVDSSVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          +VA+SGG DS  VA L  LKR GY +  V    +   K S R    C          +C+
Sbjct: 24 LVALSGGADS--VALLCVLKRLGYHIEAVHCNFHLRGKESMRDEDFCV--------ALCE 73

Query: 82 TINVSHYVFDY 92
           +N++ +   +
Sbjct: 74 KMNMTLHRIHF 84


>gi|148910739|gb|ABR18436.1| unknown [Picea sitchensis]
          Length = 423

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 29/139 (20%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K  K  +VV+A SGG+D+SV+   L+ + YD  V+  T        A   +G        
Sbjct: 20  KRGKFNKVVLAYSGGLDTSVIVPWLREN-YDCEVVCFT--------ADVGQGVGEMEGLE 70

Query: 74  YDARRV-CDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVK 125
             A+      + +     D +E F    + P           Y  G +        R V 
Sbjct: 71  AKAKASGASQLVIK----DLKEEFVKEYVFPCLRAGAVYERKYLLGTSMA------RPVI 120

Query: 126 FSDLLSVTRQLGADVLATG 144
              ++ V R++GAD ++ G
Sbjct: 121 AKAMVDVAREVGADAVSHG 139


>gi|153000639|ref|YP_001366320.1| queuosine biosynthesis protein QueC [Shewanella baltica OS185]
 gi|189029311|sp|A6WN68|QUEC_SHEB8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|151365257|gb|ABS08257.1| exsB protein [Shewanella baltica OS185]
          Length = 240

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 66/208 (31%), Gaps = 36/208 (17%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           S  L   P   + VV  SGG DS+           +V G+T                   
Sbjct: 2   STSLVSKPSASKAVVVFSGGQDSTTCLIQALTQYDEVHGITFDY-----------GQRHR 50

Query: 71  QDVYDARRVCDTINV-SHYVFD--------YEERFRNAV-IVPFASSYAAGETPLPCVDC 120
           +++  A+ +   + + SH V D             R+A+ +           T +P    
Sbjct: 51  EEIEVAKSLAKRLKITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVP---- 106

Query: 121 NRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            R + F  L      QLGA+ + TG           D       CR  D  +     L  
Sbjct: 107 GRNILFLTLAGIYAYQLGAEAIITG-------VCETDFSGYPD-CR-NDFVKAMESALVQ 157

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREM 207
              +QL  +  PL  + K     LA + 
Sbjct: 158 GMDKQL-KIITPLMWLNKAQTWALADKY 184


>gi|119508976|ref|ZP_01628128.1| asparagine synthase B [Nodularia spumigena CCY9414]
 gi|119466505|gb|EAW47390.1| asparagine synthase B [Nodularia spumigena CCY9414]
          Length = 496

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 24/138 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            D+ V V +SGG+DSS++AAL+++             +               D+  AR 
Sbjct: 218 SDVPVGVFLSGGLDSSIIAALMRQ-------------HIPNLHSFSVGLPNSPDLKAARL 264

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL------PCV----DCNRTVKFSD 128
           V + +   H+ + Y E   +AV+ P    Y     P       PC       ++ VK   
Sbjct: 265 VAEHLGTIHHEYVYTEAEMSAVL-PDVIYYLESFDPALVRSAIPCYIVSQLASKYVKVIL 323

Query: 129 LLSVTRQLGADVLATGHY 146
                 +L A       Y
Sbjct: 324 SGEGADELFAGYSYFADY 341


>gi|26553959|ref|NP_757893.1| hypothetical protein MYPE5070 [Mycoplasma penetrans HF-2]
 gi|26453967|dbj|BAC44297.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 264

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 43/150 (28%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLK-----------RDGY--DVIGVTLQLYNSRKA 60
            +      R+ V +SGG DS     +LK              +  DV+G+ L++      
Sbjct: 15  FNMIKNGDRIAVGVSGGKDS---MLMLKALSIYKKIVKSELNWDIDVVGIHLKM-----N 66

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET---PLPC 117
                     +   D       + ++             V+         G+     + C
Sbjct: 67  LCHIEYDPIIKYWND-------MGINF-----------KVVETTMGEILRGQIKKGKIQC 108

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
             C++ +K + L+   ++L  + +A GH+ 
Sbjct: 109 SLCSK-LKKAILIDEAKKLNCNKVAMGHHA 137


>gi|313681900|ref|YP_004059638.1| pp-loop domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154760|gb|ADR33438.1| PP-loop domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 252

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 29/152 (19%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLY 55
           ++S+  R N+ +     +  R++V +SGG DS  +   L+         ++++ VT    
Sbjct: 9   IMSKIGRTNA-EFALIEEGDRILVGLSGGKDSLTMVHALREQQRRAPFKFEILAVT---- 63

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                     +   G+D+      C    + H +      +        A       +  
Sbjct: 64  ---------VTYGMGEDLSALIAHCAEHEIPHKI------YETNTYEIAADKIRQNSSF- 107

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
            C   +R ++   L S  ++ G + +A GH++
Sbjct: 108 -CSFFSR-MRRGALYSAAKEYGCNKVALGHHL 137


>gi|225175443|ref|ZP_03729438.1| PP-loop domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169195|gb|EEG77994.1| PP-loop domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 233

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 23/126 (18%)

Query: 24  VVAMSGGVDSSVVAAL---LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            VA+SGG DS ++A L   L+R    V      L     A          + + D    C
Sbjct: 2   AVAISGGKDSLLMAKLFQELQRQ-RQVE-----LELEFIAMDPGYHPNIKELLIDN---C 52

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
             + +  ++      F   +     +   AG+   PC  C   ++   L +  +++G + 
Sbjct: 53  KHLQIPLHI------FEADIFK--IAQKIAGD--YPCYMC-AKMRRGALYTKAQEMGCNK 101

Query: 141 LATGHY 146
           LA GH+
Sbjct: 102 LALGHH 107


>gi|56478329|ref|YP_159918.1| argininosuccinate synthase [Aromatoleum aromaticum EbN1]
 gi|61211396|sp|Q5P0Z7|ASSY_AZOSE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|56314372|emb|CAI09017.1| Argininosuccinate synthase [Aromatoleum aromaticum EbN1]
          Length = 409

 Score = 44.0 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V+A SGG+D+SV+   L+   Y    VT                  G+++  AR+  
Sbjct: 5   KKAVLAYSGGLDTSVILKWLQDT-YQCEVVTF-----------TADLGQGEELEPARQKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LKFGIKPDNIFIDDLREEFVRDFVFPMFRCNTVYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GAD ++ G
Sbjct: 107 EIARATGADAVSHG 120


>gi|313221651|emb|CBY36134.1| unnamed protein product [Oikopleura dioica]
          Length = 390

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 18  PKDMRVVVAMSGGVDSSV---VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
               +V +  SGG DS+V   V  +L    YD  G+ L L +  +      S      + 
Sbjct: 48  KSGQKVAIGASGGKDSAVLMQVMKILNER-YD-YGLKLCLLSIDEG----ISGYRDHSLE 101

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           + +   +   +   +  Y++ +    + ++        AG     C  C    +   L  
Sbjct: 102 EVKFHSNNYGLELKILSYKDLYNWSMDEIVS------VAGRKSN-CTFCGVFRR-QALDR 153

Query: 132 VTRQLGADVLATGH 145
              QLG D++ATGH
Sbjct: 154 GAWQLGVDIVATGH 167


>gi|307709656|ref|ZP_07646108.1| queuosine biosynthesis protein queC [Streptococcus mitis SK564]
 gi|307619554|gb|EFN98678.1| queuosine biosynthesis protein queC [Streptococcus mitis SK564]
          Length = 217

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDMEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|302036609|ref|YP_003796931.1| queuosine biosynthesis protein queC [Candidatus Nitrospira
          defluvii]
 gi|300604673|emb|CBK41005.1| Queuosine biosynthesis protein QueC [Candidatus Nitrospira
          defluvii]
          Length = 232

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
          D + V+ +SGG+DS+V AA+ K+DGY +  +T+
Sbjct: 5  DPKAVILLSGGLDSTVTAAIAKQDGYRLYCLTI 37


>gi|282879019|ref|ZP_06287781.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310]
 gi|281298854|gb|EFA91261.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310]
          Length = 441

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 22/124 (17%)

Query: 24  VVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+SGG DS V     LK  GY +  +        + S R    C        + +C  
Sbjct: 25  LVALSGGADS-VCLLRCLKALGYHLEAIHCNFRLRGEESDRDELFC--------QELCQK 75

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + +  ++  +              SYA        +   R ++++   ++ + +GA  + 
Sbjct: 76  LEIPLHLAHF-----------DTRSYAQLHHVSIEMAA-RELRYAHFKNLCKAMGAGGVC 123

Query: 143 TGHY 146
            GH+
Sbjct: 124 VGHH 127


>gi|297563520|ref|YP_003682494.1| NAD+ synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847968|gb|ADH69988.1| NAD+ synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 276

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 41/195 (21%)

Query: 24  VVAMSGGVDSSVVAAL-------LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           V+ +SGGVDS     L        + +G++   V ++L                +D  DA
Sbjct: 49  VLGISGGVDSLTAGRLCRLAVDRARENGHECEYVAMRL-----------PYGEQKDEEDA 97

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            R            ++    R   +            P      +     +  ++   + 
Sbjct: 98  AR----------SVEFTAPERCLTVD---------VGPASDAMADSLA--AAGMTYASES 136

Query: 137 GADVLATGHYIRSRLYVG-DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            AD +      R R+          R +    D   +     F        DL  PL  +
Sbjct: 137 SADFVLGNVKARQRMIAQYAVAGGLRGLVVGTDHAAEAVTGFFTKYGDGGADLV-PLTGL 195

Query: 196 KKESVRDLAREMGLD 210
            K  VR +A E+G  
Sbjct: 196 TKRRVRAVAAELGAP 210


>gi|239625398|ref|ZP_04668429.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519628|gb|EEQ59494.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 410

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D++ +   LK + GY+VI   +   +  + ++  G     +         
Sbjct: 4   KVILAYSGGLDTTTIIPWLKENFGYEVICCCI---DCGQGNELDGLDERAKLSG-----A 55

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPL-PCVDCNRTVKFSDLLSV 132
             +    Y+ D  + F +  I+P           Y  G +   P +          L+ +
Sbjct: 56  SKL----YIEDLVDDFCDNYIMPCVKANAVYEYKYLLGTSMARPAIA-------KCLVDI 104

Query: 133 TRQLGADVLATG 144
            R+ GA  +  G
Sbjct: 105 ARKEGATAICHG 116


>gi|187736368|ref|YP_001878480.1| exsB protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426420|gb|ACD05699.1| exsB protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 223

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M   V +SGG+DSSV      R+ + V  V L    +   ++R+  C        A   
Sbjct: 3  KMETAVLLSGGLDSSVALHWAHRN-HRVR-VALSFDYASNHAERELKC--------AAWQ 52

Query: 80 CDTINVSHYVFDYE 93
            ++ + H V D  
Sbjct: 53 AASLGIEHRVIDIS 66


>gi|150017399|ref|YP_001309653.1| exsB protein [Clostridium beijerinckii NCIMB 8052]
 gi|189038906|sp|A6LWG7|QUEC_CLOB8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|149903864|gb|ABR34697.1| exsB protein [Clostridium beijerinckii NCIMB 8052]
          Length = 217

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          + VV  SGG DS+       ++  +VI VT   ++  +  +++  C        A  +  
Sbjct: 4  KAVVVFSGGQDSTTCLFWALKEFDEVIAVT---FDYNQKHRKEIEC--------ATSIAK 52

Query: 82 TINVSHYVFDY 92
           + + H++ D 
Sbjct: 53 ELGIEHHILDM 63


>gi|291280317|ref|YP_003497152.1| thiamine biosynthesis protein ThiI [Deferribacter desulfuricans
           SSM1]
 gi|290755019|dbj|BAI81396.1| thiamine biosynthesis protein ThiI [Deferribacter desulfuricans
           SSM1]
          Length = 389

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
           +VV  +SGG+DS V   L+ + G +VI +      Y   K + +         +Y     
Sbjct: 178 KVVSLLSGGIDSPVATWLMMKRGCEVIPLHFHTPPYTGNKLTDKIERLVKTLSLYSVN-- 235

Query: 80  CDTINVSHYVFDYEE 94
                ++ Y+ ++ +
Sbjct: 236 ----GITLYMINFTQ 246


>gi|281411798|ref|YP_003345877.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10]
 gi|281372901|gb|ADA66463.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10]
          Length = 431

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 28/199 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V+VA+SGG+DS  +  +LK+         L++  +      +    + +D     R+C 
Sbjct: 24  HVLVAVSGGIDSMTLLYVLKK-----FSPLLKIKITAAHLDHRIRESSRRDREFVERICR 78

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             NV            + V VP      +G+T        R +++  L    +++GA  +
Sbjct: 79  QWNVPVET--------SEVDVPSLWK-DSGKTLEEIA---RELRYDFLRRTAKKVGATKI 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A  H+    L           + R           L   + ++   +R P    K+  + 
Sbjct: 127 ALAHHKNDLLE-----TVVHRLIRGTGPL-----GLACISPKREEFIR-PFLVFKRSEIE 175

Query: 202 DLAREMGLDIADKSDSQDI 220
           + ARE G+       + D+
Sbjct: 176 EYAREKGVPYVVDETNYDV 194


>gi|78186427|ref|YP_374470.1| ExsB [Chlorobium luteolum DSM 273]
 gi|110816240|sp|Q3B5F4|QUEC_PELLD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|78166329|gb|ABB23427.1| ExsB [Chlorobium luteolum DSM 273]
          Length = 227

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ V+ +SGG+DS V  A+  R+GY++  +              G     +++   R + 
Sbjct: 1  MKAVLLLSGGMDSLVTTAIAHREGYELAAMH----------VNYGQRTWQKELQSFRSIA 50

Query: 81 DTINV 85
          D  ++
Sbjct: 51 DHYSI 55


>gi|29840280|ref|NP_829386.1| hypothetical protein CCA00521 [Chlamydophila caviae GPIC]
 gi|29834628|gb|AAP05264.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 247

 Score = 44.0 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 28/130 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            ++VVA+SGG DS +   L+ +     G+      L LY      K   SC A       
Sbjct: 35  TKIVVALSGGKDS-LSLLLMLKAISGRGFP----ELDLYAVNIGGKY--SCGAEVSQQYL 87

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +CD I V          +   V                C  C++ V+   L    ++L
Sbjct: 88  ANICDKIQVPFTSI--ASPYDPEVPE--------------CYSCSQ-VRRRLLFQAAKEL 130

Query: 137 GADVLATGHY 146
           GA  +A GH+
Sbjct: 131 GATAVAFGHH 140


>gi|51598774|ref|YP_072962.1| NH(3)-dependent NAD+ synthetase [Borrelia garinii PBi]
 gi|51573345|gb|AAU07370.1| NH(3)-dependent NAD+ synthetase [Borrelia garinii PBi]
          Length = 512

 Score = 44.0 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G D V+G+++            GS      + DA+ +
Sbjct: 259 KVHLGVSGGIDSALVACLACFALGADNVVGISM-----PSKFSSTGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   +
Sbjct: 308 SRKLGFKLIEMPIKDLF--EVSSRFLEGH 334


>gi|51243885|ref|YP_063769.1| asparagine synthetase (WbpS) [Desulfotalea psychrophila LSv54]
 gi|50874922|emb|CAG34762.1| probable asparagine synthetase (WbpS) [Desulfotalea psychrophila
           LSv54]
          Length = 634

 Score = 44.0 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDSSVV AL+++     +    + Y       R            A  V   +   
Sbjct: 278 LSGGVDSSVVVALMQKQAQQSV----KTYAIGFDDPRYNE------AQYAAAVARHLGTE 327

Query: 87  H 87
           H
Sbjct: 328 H 328


>gi|326404377|ref|YP_004284459.1| NAD(+) synthetase [Acidiphilium multivorum AIU301]
 gi|325051239|dbj|BAJ81577.1| NAD(+) synthetase [Acidiphilium multivorum AIU301]
          Length = 554

 Score = 44.0 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSR 58
           MV+  A  +N            V++ +SGG+DS++ AA+     G   V  V +      
Sbjct: 272 MVMGLADYVNKNGFPG------VILGLSGGIDSALSAAVAVDALGPARVRAVMM------ 319

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDY--EERFRNAVIVPFASSYAAGETP 114
                     +   + DA    D + +               AV+ P       G TP
Sbjct: 320 -----PSRYTSAHSLEDAAACADLLGIRCDTVPIGGATEAFAAVLEPLYE----GRTP 368


>gi|325971761|ref|YP_004247952.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy]
 gi|324026999|gb|ADY13758.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy]
          Length = 484

 Score = 44.0 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 18/157 (11%)

Query: 1   MVVSEATRLNS----LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN 56
           M  +  T LN+    L +       R+ VA SGG DS +   +  R  Y+   +      
Sbjct: 1   MPTTGETVLNNVRSFLAMQHIDATKRIGVAFSGGSDS-LALLIALRKMYEPSFLHAMYVQ 59

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
                  +       +  +    C  + VS ++ D  +      +     +   G     
Sbjct: 60  HHLRPSNELEAETALNREN----CQKLGVSLHILDLGK----GSVAHAMQTRRGG----- 106

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYV 153
             +  R +++  L     + G   LAT H    +L  
Sbjct: 107 VEEAARYLRYEALYEECNRGGCTYLATAHNADDQLET 143


>gi|33866583|ref|NP_898142.1| hypothetical protein SYNW2051 [Synechococcus sp. WH 8102]
 gi|33633361|emb|CAE08566.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 276

 Score = 44.0 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 18/67 (26%)

Query: 25 VAMSGGVDSSVVAALLKRDGYD----VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          VA SGGVDS++VAA+      D    V GV+  L              A   + +AR   
Sbjct: 31 VAYSGGVDSTLVAAIAHEQKGDAAVAVTGVSPAL--------------APHLLEEARAQA 76

Query: 81 DTINVSH 87
            I + H
Sbjct: 77 QWIGIRH 83


>gi|71993933|ref|NP_001024799.1| hypothetical protein M02D8.4 [Caenorhabditis elegans]
 gi|51536861|gb|AAU05557.1| Asparagine synthetase protein 2, isoform c, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 538

 Score = 44.0 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 34/180 (18%)

Query: 19  KDMRVVVAMSGGVD----SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D  + V +SGG+D    SS+ +  +KR G       + ++     S   G      DV 
Sbjct: 228 SDAPIGVLLSGGLDSSLVSSIASREMKRRG-------MAVH-----SFSIGVDHNSPDVV 275

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            AR+V   I  +H+ F +        +        + +  +  +  +  + F  L    R
Sbjct: 276 AARKVAKFIGTTHHEFYFSIEEGIKNLRKLIWHLESYD--VTSIRASTPMYF--LSEEIR 331

Query: 135 QL---------GADVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFAT 180
           +L         GAD +  G+         +D ++        +     L  D+S    + 
Sbjct: 332 KLGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSV 391


>gi|331270070|ref|YP_004396562.1| argininosuccinate synthase [Clostridium botulinum BKT015925]
 gi|329126620|gb|AEB76565.1| argininosuccinate synthase [Clostridium botulinum BKT015925]
          Length = 402

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+S+    LK + Y  +VI   + +       + +               
Sbjct: 4   KVVLAYSGGLDTSITIHWLKEN-YNLEVIACCVNVGQDEDFDEIEKKAIKSG-------- 54

Query: 80  CDTINVSHYVFDYEERF-RNAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
              I +     ++   +    V         Y  G +        R +    L+ V  + 
Sbjct: 55  ASKIYIEDVTSEFVSEYIYKGVKANAMYEGKYLLGTSFA------RPLIAKKLVEVAHKE 108

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 109 GAKYICHG 116


>gi|320193322|gb|EFW67960.1| putative LPS biosynthesis protein [Escherichia coli WV_060327]
          Length = 380

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++         +    + +       + +
Sbjct: 72  IIGLSGGLDSSYAAYIAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLI------EGL 121

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE      +     S+     P   +  + +  FS L    RQ     +
Sbjct: 122 GLELYTEVVNWEE------MKDLQLSFLKSGIPDQDLVQDASF-FSSLYKFARQHRIKHV 174

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 175 ITGSNFSTECCREPEEWGGY 194


>gi|56123295|gb|AAV74532.1| WbuX [Escherichia coli]
 gi|62002552|gb|AAX58764.1| WbeC [Escherichia coli]
          Length = 380

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++         +    + +       + +
Sbjct: 72  IIGLSGGLDSSYAAYIAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLI------EGL 121

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE      +     S+     P   +  + +  FS L    RQ     +
Sbjct: 122 GLELYTEVVNWEE------MKDLQLSFLKSGIPDQDLVQDASF-FSSLYKFARQHRIKHV 174

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 175 ITGSNFSTECCREPEEWGGY 194


>gi|220907265|ref|YP_002482576.1| argininosuccinate synthase [Cyanothece sp. PCC 7425]
 gi|254807518|sp|B8HSA9|ASSY_CYAP4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|219863876|gb|ACL44215.1| Argininosuccinate synthase [Cyanothece sp. PCC 7425]
          Length = 401

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +VV+A SGGVD+SV    LK +           +   +          G ++   R+
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKHE-----------WGVEEVITLAADLGQGDELEPIRQ 51

Query: 79  VCDTIN--VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
                   +S  V D ++ F          + A  E   P      R +    L+    +
Sbjct: 52  KALNSGAEISL-VADAKDSFIKEYAFAAIQANALYENRYPLSTALARPLIAKLLVDAAAE 110

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 111 YGADAVAHG 119


>gi|152993271|ref|YP_001358992.1| argininosuccinate synthase [Sulfurovum sp. NBC37-1]
 gi|187470632|sp|A6QAX6|ASSY_SULNB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|151425132|dbj|BAF72635.1| argininosuccinate synthase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + V+A SGG+D+S++   L+ + Y+   VT                  G++V  AR+   
Sbjct: 8   KAVLAYSGGLDTSIILKWLQDE-YECEVVTF-----------TADLGQGEEVEPARQKAL 55

Query: 82  TINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            + +     ++ D  E F    + P           Y  G +    +   + +       
Sbjct: 56  DMGIKPENIFILDLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLISKKQI------E 109

Query: 132 VTRQLGADVLATG 144
           +  Q GAD ++ G
Sbjct: 110 IAHQTGADAVSHG 122


>gi|145592083|ref|YP_001154085.1| thiamine biosynthesis protein ThiI [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283851|gb|ABP51433.1| thiamine biosynthesis/tRNA modification protein ThiI [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 474

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDV 47
            + +V+  +SGG+DS V A LL R G  V
Sbjct: 170 SEGKVLALVSGGIDSPVAAWLLMRRGAHV 198


>gi|124026895|ref|YP_001016010.1| argininosuccinate synthase [Prochlorococcus marinus str. NATL1A]
 gi|166221003|sp|A2C5I6|ASSY_PROM1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|123961963|gb|ABM76746.1| Argininosuccinate synthase [Prochlorococcus marinus str. NATL1A]
          Length = 400

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  +VV+A SGGVD+SV    L K  G + VI     L    +  + K    +       
Sbjct: 3   KAKKVVLAYSGGVDTSVCIPYLKKEYGVEHVIAFAADLGQGDELDQIKQKAISAGASE-- 60

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYA--AGETPLPCVDCNRTVKFSDLLSVTR 134
                 I       +  + F      P   S A   G  PL        +   +L+ + R
Sbjct: 61  ----SLIG------NLVKPFIEDFAFPAIRSNALYQGRYPLSTALARPLIA-KNLVEIAR 109

Query: 135 QLGADVLATG 144
           +L AD +A G
Sbjct: 110 ELNADGVAHG 119


>gi|300712359|ref|YP_003738173.1| exsB protein [Halalkalicoccus jeotgali B3]
 gi|299126042|gb|ADJ16381.1| exsB protein [Halalkalicoccus jeotgali B3]
          Length = 222

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          V+ +SGG+DS+  A   +  GY++  +    Y  R   K         +  DA    D +
Sbjct: 5  VILLSGGMDSATAAYEARETGYEIAALH-TSYGQRTEGKEYDCAHWLAEELDA---ADFL 60

Query: 84 NVS 86
          ++ 
Sbjct: 61 HIE 63


>gi|262306043|gb|ACY45614.1| gln amidotransferase [Endeis laevis]
          Length = 189

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQL 54
          +V++ +SGGVDS+V AALL +      VI V +  
Sbjct: 40 KVLMFVSGGVDSTVCAALLHKALKPNQVIAVHIDN 74


>gi|84489301|ref|YP_447533.1| putative asparagine synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|84372620|gb|ABC56890.1| putative asparagine synthetase [Methanosphaera stadtmanae DSM 3091]
          Length = 474

 Score = 44.0 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 22/141 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +  SGGVDS+++A +LK+ G              K +         QD+  A+++   
Sbjct: 237 VALLFSGGVDSTLIALILKKLGI-------------KTTLYSVGVETSQDLKYAKKIAHD 283

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL------ 136
           I++   +    +        P  ++    +T L  +    T+K +  L+           
Sbjct: 284 IDIPLTIQIINQEIIEKSFYPTVNTIE--DTNLMKIGVGMTIKLTSHLAHMDNHKVILSG 341

Query: 137 -GADVLATGHYIRSRLYVGDD 156
            GAD L  G+    + Y   D
Sbjct: 342 QGADELFAGYNRYKKKYTNHD 362


>gi|329766625|ref|ZP_08258168.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329136880|gb|EGG41173.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 507

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 100/331 (30%), Gaps = 67/331 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG-----VTLQLYNSRKASKRKGSCCAGQDVY 74
           +  V+  +SGG+DS+V A L+ +     IG     V +     R   +++       +  
Sbjct: 210 EGNVLCGVSGGIDSTVAALLIHKA----IGDRQKCVFVNNGLLRLNEEKEIEEMFKNNFN 265

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-----L 129
                           ++       V   F S     E P       + +   +      
Sbjct: 266 ---------------VNFTSVDAVQV---FLSKLKGVEDPE-----KKRMIVGEEFIHVF 302

Query: 130 LSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
               ++ G    LA G      +  G   K    + +           +          +
Sbjct: 303 TKFAKENGPFKWLAQGTLYPDVIESGV-SKGPAAVIKSHHN-------VGGLPDWLDLQI 354

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL----EGD 244
             PL ++ K+ VR +A+ +G+            F   G    ++  I             
Sbjct: 355 LEPLRELYKDEVRKIAKILGVPEKLYMRHP---FPGPGLAVRIIGEITPAKLQIAKVASK 411

Query: 245 IVHLNGQILGRHNGII--NYTIGQRRGLGVAMGEPLF-------VVY-LDKNSSRVIVGP 294
           IV     + G +  +      +G  + +GV   E  +       VV  +D  ++     P
Sbjct: 412 IVEDELLVAGIYGNVWQAYAAVGDDKAVGVVGDERKYGNIVMIRVVDSIDAMTADWTRLP 471

Query: 295 RESLE--VHRIY--LREINWLGDGLFEDAVV 321
            E LE   +RI   + ++ W+   +      
Sbjct: 472 HELLEKISNRITNEVEDVTWVTYAISSKPPA 502


>gi|327193463|gb|EGE60359.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CNPAF512]
          Length = 501

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 32/202 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R++VA+SGG DS+ +  LL      V     L+               +  +      +C
Sbjct: 24  RILVAISGGSDSTGLLLLLDEA---VKAAPHLKASLCAATVDHGLRAGSADEAQQVAALC 80

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD-CNRTVKFSDLLSVTRQLGAD 139
            ++ + H +                 +   GE P   +    R  ++  L     + GA+
Sbjct: 81  ASLGIPHII-----------------AAWQGEKPKTGIMAAARKARYELLAESAERFGAN 123

Query: 140 VLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           ++ TGH Y      +   G R   +   +         LF      L  L F      + 
Sbjct: 124 LIVTGHTYDDQCETLAMRGVRTEQLSSGIADA-----VLFDRRFWILRPLLF----SSRA 174

Query: 199 SVRDLAREMGLDIADKSDSQDI 220
            +R   RE  +   D   ++D+
Sbjct: 175 DIRSFLRERRVAWIDDPSNEDV 196


>gi|300193273|pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
           Streptomyces Avermitilis
 gi|300193274|pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
           Streptomyces Avermitilis
          Length = 590

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV++                +     DA  + 
Sbjct: 329 VLIGLSGGIDSALVAAIACDALGAQNVYGVSM-----------PSKYSSDHSKGDAAELA 377

Query: 81  DTINVSHYVFDYEERF 96
               ++      E  F
Sbjct: 378 RRTGLNFRTVSIEPMF 393


>gi|258423361|ref|ZP_05686252.1| exsB protein [Staphylococcus aureus A9635]
 gi|257846422|gb|EEV70445.1| exsB protein [Staphylococcus aureus A9635]
          Length = 222

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++    + + +V  SGG DS+      K+   +V  VT   Y  R  ++          +
Sbjct: 1   MESVLNNEKAIVVFSGGQDSTTCLFYAKKQFKEVELVTF-NYGQRHDTE----------I 49

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
             A+++     + H+V D      + +     + +    T       N  V   +LL   
Sbjct: 50  EVAKQIAQDQGMKHHVLDMSLL--SQLTPNALTQHDMEITNNEDGIPNTFVPARNLLFLS 107

Query: 131 ---SVTRQLGADVLATG 144
              ++  Q+GA  + TG
Sbjct: 108 FAGALAYQIGAKHIITG 124


>gi|154251557|ref|YP_001412381.1| NAD+ synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154155507|gb|ABS62724.1| NAD+ synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 554

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++VAA+     G D +   +                + + + DA     
Sbjct: 288 VVLGLSGGIDSALVAAIAVDALGADKVHCVM----------LPYRYTSSESLTDAEACAK 337

Query: 82  TINVSHYVFDYEE 94
            + V + V   EE
Sbjct: 338 LLGVRYDVVPIEE 350


>gi|42523187|ref|NP_968567.1| LPS biosynthesis protein WbpG [Bdellovibrio bacteriovorus HD100]
 gi|39575392|emb|CAE79560.1| LPS biosynthesis protein WbpG [Bdellovibrio bacteriovorus HD100]
          Length = 394

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 19/123 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K     ++G+   L++              Q V +  R+ D +
Sbjct: 86  IIGLSGGLDSSYAAYVAKE----IMGLRPLLFHVDAGWNTD------QAVGNIERLVDGL 135

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE      +    +++   +     +  +    FS L    +      +
Sbjct: 136 GLDLYTEVINWEE------MKDMQTAFLKAQVADQDIPQDTAF-FSALYKFAKSHKIKYV 188

Query: 142 ATG 144
            TG
Sbjct: 189 LTG 191


>gi|255019064|ref|ZP_05291190.1| argininosuccinate synthase [Listeria monocytogenes FSL F2-515]
          Length = 34

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
          ++V+A SGG+D+SV    L   GY+VI  
Sbjct: 5  KIVLAYSGGLDTSVAIQWLVESGYEVIAC 33


>gi|242399383|ref|YP_002994807.1| Asparagine synthetase [Thermococcus sibiricus MM 739]
 gi|242265776|gb|ACS90458.1| Asparagine synthetase [Thermococcus sibiricus MM 739]
          Length = 509

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            RV V  SGG+DSS++A L K+   +VI     LY +              D+  AR+V 
Sbjct: 269 KRVRVLFSGGLDSSLIALLAKKYSKEVI-----LYTAGAEGSP--------DLEWARKVS 315

Query: 81  DTINVSH--YVFDYEE 94
           + ++++   YVFD EE
Sbjct: 316 EQLDLTLKEYVFDLEE 331


>gi|29832491|ref|NP_827125.1| NH(3)-dependent NAD(+) synthetase [Streptomyces avermitilis
           MA-4680]
 gi|29609610|dbj|BAC73660.1| putative NH(3)-dependent NAD(+) synthetase [Streptomyces
           avermitilis MA-4680]
          Length = 584

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALVAAIACDALGAQNVYGVSM-----------PSKYSSDHSKGDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               ++      E  F
Sbjct: 377 RRTGLNFRTVSIEPMF 392


>gi|32267111|ref|NP_861143.1| hypothetical protein HH1612 [Helicobacter hepaticus ATCC 51449]
 gi|32263164|gb|AAP78209.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 267

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYD 75
            +  +V++ +SGG DS ++A LL           +Q +                G +   
Sbjct: 38  KEGDKVLLGLSGGKDSILLATLLS---------YMQKHAPFKFDFKAITIDYGRGGEYEY 88

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+ + +++      E +R  +            T   C  C+R ++   L S   +
Sbjct: 89  IFEYCEKLGITY------ELYRTDIYK-ILEENKREGTIY-CSFCSR-MRRGALYSKALE 139

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 140 GGFNKLALAHHL 151


>gi|45190952|ref|NP_985206.1| AER350Wp [Ashbya gossypii ATCC 10895]
 gi|74693330|sp|Q756B7|GUAA_ASHGO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|44984020|gb|AAS53030.1| AER350Wp [Ashbya gossypii ATCC 10895]
          Length = 525

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-CD 81
           V+ A+SGGVDS+V A L+       IG      +   A           +  + +++  +
Sbjct: 226 VIGAVSGGVDSTVAAKLMTEA----IG------DRFHAILVDNGVLRLNEAANVKKILGE 275

Query: 82  TINVSHYVFDYEERF 96
            + ++  V D  E F
Sbjct: 276 GLGINLTVVDASEEF 290


>gi|328952124|ref|YP_004369458.1| Conserved hypothetical protein CHP00268 [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452448|gb|AEB08277.1| Conserved hypothetical protein CHP00268 [Desulfobacca acetoxidans
           DSM 11109]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 41/194 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V  SGG+DS+    LL +   D+ G       +  A   +G      +  +AR++  
Sbjct: 10  RVLVLFSGGIDST----LLLKIVADLFG------ENSAALTFEGPHRPTGETLEARKITR 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + V H   D+          PF        TP  C  C   + +     +  +  A+VL
Sbjct: 60  LLGVRHLTEDF---------DPFGLPDFRENTPERCYACKCEM-YRRGWEIASKFEAEVL 109

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
             G        + D    R  +    ++   +S FL                  +K  +R
Sbjct: 110 LDG------TNLDDLNDTRPGLKAAQEMGV-RSPFLKI--------------GWRKADIR 148

Query: 202 DLAREMGLDIADKS 215
           +L+R   L   D+ 
Sbjct: 149 ELSRVWQLPGWDRP 162


>gi|296272040|ref|YP_003654671.1| exsB protein [Arcobacter nitrofigilis DSM 7299]
 gi|296096215|gb|ADG92165.1| exsB protein [Arcobacter nitrofigilis DSM 7299]
          Length = 223

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + +  +SGG+DS++ + + K +GY++I +              G     +++   R VC
Sbjct: 3  KKAICILSGGMDSTLSSYIAKNEGYEIIAIHF----------NYGQRTEKRELKAFRDVC 52

Query: 81 DTINVS 86
          + +NV 
Sbjct: 53 ENLNVK 58


>gi|262306073|gb|ACY45629.1| gln amidotransferase [Lynceus sp. 'Lyn']
          Length = 193

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 20 DMRVVVAM-SGGVDSSVVAALLKRD 43
          D +VV+ + SGGVDS+V AALL + 
Sbjct: 43 DQKVVLMLVSGGVDSAVCAALLHKA 67


>gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
 gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
 gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
 gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
 gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
 gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
          Length = 480

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SH 72

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 73  EDLRFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 121 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 171

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 172 IRPLLGVTKEEIVDYCNKLNL 192


>gi|194335950|ref|YP_002017744.1| exsB protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308427|gb|ACF43127.1| exsB protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + VV +SGG+DS V  A+    G+++  +              G     +++   R +
Sbjct: 9  QPKAVVLLSGGMDSLVTTAMAHAAGFELAAMH----------VNYGQRTWQKELESFRSI 58

Query: 80 CDTINVS 86
          C   N+ 
Sbjct: 59 CSHYNIE 65


>gi|121586235|ref|ZP_01676025.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80]
 gi|153829935|ref|ZP_01982602.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39]
 gi|121549501|gb|EAX59527.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80]
 gi|148874570|gb|EDL72705.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39]
          Length = 440

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A K    C         +
Sbjct: 19 KILLALSGGVDSRVLLALLARGRDEFGWDVAAVHVHHGLSPNADKWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|221133698|ref|ZP_03560003.1| argininosuccinate synthase [Glaciecola sp. HTCC2999]
          Length = 407

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 23/135 (17%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            P   +VV+A SGG+D+S +   LK + YD   V             +      + +   
Sbjct: 6   KPAIKKVVLAYSGGLDTSAIIPWLKEN-YDCEVV--AFAADVGQGDEELEGLHDKAIASG 62

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
              C       Y+ D ++ F    I P           Y  G +    V     V     
Sbjct: 63  ASEC-------YIMDLKQEFVKDFIFPTVKTGAVYEGEYLLGTSMARPVIAKAQV----- 110

Query: 130 LSVTRQLGADVLATG 144
             V R++GAD L  G
Sbjct: 111 -EVARKVGADALCHG 124


>gi|148260979|ref|YP_001235106.1| NAD synthetase [Acidiphilium cryptum JF-5]
 gi|146402660|gb|ABQ31187.1| NH(3)-dependent NAD(+) synthetase [Acidiphilium cryptum JF-5]
          Length = 583

 Score = 44.0 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSR 58
           MV+  A  +N            V++ +SGG+DS++ AA+     G   V  V +      
Sbjct: 301 MVMGLADYVNKNGFPG------VILGLSGGIDSALSAAVAVDALGPARVRAVMM------ 348

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDY--EERFRNAVIVPFASSYAAGETP 114
                     +   + DA    D + +               AV+ P       G TP
Sbjct: 349 -----PSRYTSAHSLEDAAACADLLGIRCDTVPIGGATEAFAAVLEPLYE----GRTP 397


>gi|315636127|ref|ZP_07891381.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
 gi|315479488|gb|EFU70167.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
          Length = 381

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 20/123 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS +A  L   G   + V              G   +   V +   + +  
Sbjct: 72  ILGLSGGVDSSYLALKLYEAGIRPLVVH-----------VDGGWNSELAVQNIENIVNYC 120

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
               +  V D+EE      +     +Y         V  +    F+ L     + G + +
Sbjct: 121 GWHLHTIVIDWEE------MRDLQLAYLKSAIANQDVPQDHAF-FASLYHFATKYGINYV 173

Query: 142 ATG 144
            +G
Sbjct: 174 ISG 176


>gi|240103911|ref|YP_002960220.1| ATP-binding protein, PP-loop superfamily [Thermococcus
          gammatolerans EJ3]
 gi|239911465|gb|ACS34356.1| ATP-binding protein, PP-loop superfamily [Thermococcus
          gammatolerans EJ3]
          Length = 244

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          +MRV V  SGG DS+         G++V     +   S  + +         +++     
Sbjct: 3  EMRVAVLYSGGKDSNYALYWALEQGFEV-----KYLVSMVSEREDSYMYHVPNIHLTELQ 57

Query: 80 CDTINVSH 87
             I +  
Sbjct: 58 ARAIGIPL 65


>gi|227537569|ref|ZP_03967618.1| NAD(+) synthase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242571|gb|EEI92586.1| NAD(+) synthase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 546

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +  + +SGG+DS+VVAAL     G + V+ + +                +   + DA  
Sbjct: 290 KKATLGLSGGLDSAVVAALACEAIGAENVLAILM-----------PSVYSSNHSLKDALD 338

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
           +      +H++   ++           S    G  P
Sbjct: 339 LVKNAGCTHHIIPIKDV--AQAFEGTLSKAFEGLQP 372


>gi|226365671|ref|YP_002783454.1| GMP synthase [Rhodococcus opacus B4]
 gi|226244161|dbj|BAH54509.1| GMP synthetase [Rhodococcus opacus B4]
          Length = 523

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D + +  +SGGVDS+V AAL++R  G ++  V 
Sbjct: 218 DGKAICGLSGGVDSAVAAALVQRAIGDNLTCVF 250


>gi|157736939|ref|YP_001489622.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
 gi|157698793|gb|ABV66953.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
          Length = 381

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 20/123 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS +A  L   G   + V              G   +   V +   + +  
Sbjct: 72  ILGLSGGVDSSYLALKLYEAGIRPLVVH-----------VDGGWNSELAVQNIENIVNYC 120

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
               +  V D+EE      +     +Y         V  +    F+ L     + G + +
Sbjct: 121 GWHLHTIVIDWEE------MRDLQLAYLKSAIANQDVPQDHAF-FASLYHFATKYGINYV 173

Query: 142 ATG 144
            +G
Sbjct: 174 ISG 176


>gi|83645199|ref|YP_433634.1| glutamine-hydrolyzing asparagine synthase [Hahella chejuensis KCTC
           2396]
 gi|83633242|gb|ABC29209.1| asparagine synthase (glutamine-hydrolyzing) [Hahella chejuensis
           KCTC 2396]
          Length = 662

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRVCDTINV 85
           +SGGVDSS+VAA+++           +L +   +S   G      D    AR V  ++ +
Sbjct: 278 LSGGVDSSLVAAMMR-----------KLSDKDISSFSIGFEEQSHDESGYARDVARSLRL 326

Query: 86  SHY 88
            H+
Sbjct: 327 KHH 329


>gi|313897811|ref|ZP_07831352.1| argininosuccinate synthase [Clostridium sp. HGF2]
 gi|312957346|gb|EFR38973.1| argininosuccinate synthase [Clostridium sp. HGF2]
          Length = 407

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++A SGG+D+S++   LK             YN+ +          G ++       
Sbjct: 7   KKVILAYSGGLDTSIIIPWLKE-----------NYNNCEVVAVSADVGQGTELDGLEEKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS-DLLSVTRQLGA 138
                   Y+ D ++ F    I P   + A  E                 L+ + +Q GA
Sbjct: 56  IKTGASKLYILDLKDEFVEDYIYPCLKANAIYEDVYLLGTAFARPLIGQKLVEIAKQEGA 115

Query: 139 DVLATG 144
           D +  G
Sbjct: 116 DAICHG 121


>gi|254787331|ref|YP_003074760.1| ExsB protein [Teredinibacter turnerae T7901]
 gi|237683716|gb|ACR10980.1| ExsB protein [Teredinibacter turnerae T7901]
          Length = 224

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+ V A+ K  GY+    TL        S   G     + +  A RV 
Sbjct: 3  KKAVVLVSGGLDSATVLAMAKDQGYEC--FTL--------SFDYGQRHRAE-LQAAERVA 51

Query: 81 DTIN 84
            + 
Sbjct: 52 QAMG 55


>gi|256425803|ref|YP_003126456.1| GMP synthase [Chitinophaga pinensis DSM 2588]
 gi|256040711|gb|ACU64255.1| GMP synthase, large subunit [Chitinophaga pinensis DSM 2588]
          Length = 512

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           D +VV+A+SGGVDS+V A L+ + 
Sbjct: 216 DKKVVMALSGGVDSTVAAELIHKA 239


>gi|169828574|ref|YP_001698732.1| queuosine biosynthesis protein [Lysinibacillus sphaericus C3-41]
 gi|254764358|sp|B1HPF6|QUEC_LYSSC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|168993062|gb|ACA40602.1| Queuosine biosynthesis protein [Lysinibacillus sphaericus C3-41]
          Length = 219

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + +V  SGG DS+      K    ++  VT   +N  +  + +  C        A +
Sbjct: 2  KQEKAIVVFSGGQDSTTCLFWAKERFAEIEAVT---FNYGQRHRLEIEC--------AEQ 50

Query: 79 VCDTINVSHYVFDY 92
          + + + + H++ D 
Sbjct: 51 IAEELGIKHHILDM 64


>gi|167750877|ref|ZP_02423004.1| hypothetical protein EUBSIR_01861 [Eubacterium siraeum DSM 15702]
 gi|167656056|gb|EDS00186.1| hypothetical protein EUBSIR_01861 [Eubacterium siraeum DSM 15702]
          Length = 408

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S++   L  +  G +VI V              G+     ++     
Sbjct: 6   KKIVLAYSGGLDTSIIIPWLHENYPGCEVICV-------------AGNVGQDSEIVGLEE 52

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLS 131
                     Y+ D ++ F N  I P          Y  G +        R      L+ 
Sbjct: 53  RAKKTGASKLYIEDIQDEFVNDFIFPTLKAGAKYEGYLLGTSFA------RPPIAKRLVE 106

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +  G
Sbjct: 107 IAKKEGADAICHG 119


>gi|160893013|ref|ZP_02073801.1| hypothetical protein CLOL250_00551 [Clostridium sp. L2-50]
 gi|156865096|gb|EDO58527.1| hypothetical protein CLOL250_00551 [Clostridium sp. L2-50]
          Length = 427

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 34/143 (23%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAAL--LKRDG-YDVIGVTLQLYNSRKASKRKGSCC 68
           L++ K+    +VV+A SGG+D    A +  LK    YDVI   +   +  + S+ +G   
Sbjct: 18  LEMAKD----KVVLAYSGGLD--TTAIIPWLKETYDYDVICACI---DVGQESELEGLDE 68

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCN 121
             +           +    Y+ D  +   +  I+P           Y  G +        
Sbjct: 69  RAKYSG-----ASKL----YILDVVDELCDEYIMPTVQADAVYENKYLLGTSFA------ 113

Query: 122 RTVKFSDLLSVTRQLGADVLATG 144
           R +    L+ V R+ GA  +  G
Sbjct: 114 RPLIAKKLVEVARKEGAVAICHG 136


>gi|111023165|ref|YP_706137.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodococcus jostii RHA1]
 gi|110822695|gb|ABG97979.1| GMP synthase (glutamine-hydrolyzing)/ GMP synthase [Rhodococcus
           jostii RHA1]
          Length = 523

 Score = 44.0 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D + +  +SGGVDS+V AAL++R  G ++  V 
Sbjct: 218 DGKAICGLSGGVDSAVAAALVQRAIGDNLTCVF 250


>gi|323455513|gb|EGB11381.1| hypothetical protein AURANDRAFT_4656 [Aureococcus anophagefferens]
          Length = 261

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 29/134 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-------G--YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +V+VA SGG DS+ +  LLK+        G  +DV+ V L     +K             
Sbjct: 30  KVLVACSGGKDSNALLYLLKQAQQRRLFRGIDFDVVAVHL----DQKQPGHDVEPLRAWL 85

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D         V   V    E    +V+        AG++   C  C+R ++   L + 
Sbjct: 86  EDDV-------GVDFQVI---EEDTYSVV---VDKTKAGKSY--CSLCSR-LRRGILYTH 129

Query: 133 TRQLGADVLATGHY 146
             + GA VLA GH+
Sbjct: 130 AERRGAGVLALGHH 143


>gi|268315893|ref|YP_003289612.1| exsB protein [Rhodothermus marinus DSM 4252]
 gi|262333427|gb|ACY47224.1| exsB protein [Rhodothermus marinus DSM 4252]
          Length = 238

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 66/210 (31%), Gaps = 29/210 (13%)

Query: 7   TRLNSLDLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           + LN L   K  +     +V +SGG DS+                 L  +   +A     
Sbjct: 2   SALNLLPTLKPAEHGETALVLLSGGQDSTTCLYWA-----------LHYFPKVEALGFHY 50

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV- 124
                 ++  AR++ D   V   V D     R + +       +A     P +       
Sbjct: 51  GQKHAVELEQARKIADRAGVPFTVLDLRGLLRGSALTEHEQDVSAAHPLAPHLPAAFVPG 110

Query: 125 KFSDLLSVTRQLGADVLAT---GHYIRSRLYVGDDGKRRRI--MCRPMDLERDQSYFLFA 179
           + +  L++    G         G   ++      D +R  I  M R + L  D       
Sbjct: 111 RNALFLTLAASYGFTRGIHDLVGGMCQTDYSGYPDCRREFIDAMERALSLALD------- 163

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
                   +  PL  + K     LARE+G+
Sbjct: 164 ----TPIRIHTPLMHLTKAETWRLARELGI 189


>gi|239618048|ref|YP_002941370.1| NAD+ synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506879|gb|ACR80366.1| NAD+ synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 280

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          VV +SGG+DS+VV  L     G D V G+   +   R +S         + V DA  VC 
Sbjct: 22 VVGISGGIDSAVVGKLCVEALGRDRVYGL---ILPERDSS--------PETVSDATLVCK 70

Query: 82 TINVSH 87
           + + +
Sbjct: 71 YLGIDY 76


>gi|152990287|ref|YP_001356009.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2]
 gi|151422148|dbj|BAF69652.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2]
          Length = 626

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 29/157 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-------LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           K+ ++V+ +SGG+DS++          +L++   D++GV++            G      
Sbjct: 334 KETKLVIGVSGGLDSTLALLVCAKVCEILQKPYSDIVGVSM-----------PGFGTTDA 382

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC--VDCNRTVKFS-- 127
               AR++C+ I V++   D  +    +V+  F         P  C     N   +    
Sbjct: 383 TKKSARKLCEAIGVTYKQIDITK----SVLRHFEDI---DHDPDICDVTYENAQARERTQ 435

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC 164
            L+ +  ++G  V+ TG      L           M 
Sbjct: 436 ILMDLANEVGGIVIGTGDLSEIALGFATYNGDHMAMY 472


>gi|148269484|ref|YP_001243944.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1]
 gi|147735028|gb|ABQ46368.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1]
          Length = 419

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 28/199 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V+VA+SGG+DS  +  +LK+         L++  +      +    + +D     R+C 
Sbjct: 12  HVLVAVSGGIDSMTLLYVLKK-----FSPLLKIKITAAHLDHRIRESSRRDREFVERICR 66

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             NV            + V VP      +G+T        R +++  L    +++GA  +
Sbjct: 67  QWNVPVET--------SEVDVPSLWK-DSGKTLEEIA---RELRYDFLRRTAKKVGATKI 114

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           A  H+    L           + R           L   + ++   +R P    K+  + 
Sbjct: 115 ALAHHKNDLLE-----TVVHRLIRGTGPL-----GLACISPKREEFIR-PFLVFKRSEIE 163

Query: 202 DLAREMGLDIADKSDSQDI 220
           + ARE G+       + D+
Sbjct: 164 EYAREKGVPYVVDETNYDV 182


>gi|319901513|ref|YP_004161241.1| PP-loop domain protein [Bacteroides helcogenes P 36-108]
 gi|319416544|gb|ADV43655.1| PP-loop domain protein [Bacteroides helcogenes P 36-108]
          Length = 253

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 37/135 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD------GYDVIGVT--LQLYNSRKASKRKGSCCAGQDV 73
           ++++ +SGG DS  +  LL R        + V+     ++                  DV
Sbjct: 33  KILIGLSGGKDSLALVELLARRARIYKPKFSVVAAHVVMKNI------------PYQSDV 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSDLLS 131
           +  R   ++  V          +      P      +     PC     NR      L +
Sbjct: 81  HYLREYAESWEVPFI------LYETE-FDPVTDIRKS-----PCFLCSWNRR---KALFT 125

Query: 132 VTRQLGADVLATGHY 146
           V ++ G + +A GH+
Sbjct: 126 VAKEQGCNKIALGHH 140


>gi|260893554|ref|YP_003239651.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260865695|gb|ACX52801.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 244

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 23/129 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARR 78
           ++ V +SGG DS    ALL+      I   L+ Y+    S             D+     
Sbjct: 19  KIAVGVSGGKDS---VALLR------ILAHLRDYSHLSFSMVAIMIDPGWKEVDIGPLAD 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C   ++  Y+           I    +  A GE   PC  C   ++   L S    LG 
Sbjct: 70  FCSKFDIPFYLV-------KHPIARIIA--AKGEN-NPCSLC-AKLRSGLLYSKAVSLGC 118

Query: 139 DVLATGHYI 147
             +A GH++
Sbjct: 119 RRVALGHHL 127


>gi|158337356|ref|YP_001518531.1| argininosuccinate synthase [Acaryochloris marina MBIC11017]
 gi|189046379|sp|B0CCQ2|ASSY_ACAM1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|158307597|gb|ABW29214.1| argininosuccinate synthase [Acaryochloris marina MBIC11017]
          Length = 399

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +VV+A SGGVD+SV    L    G  +VI  TL   +  +  + +       D   A
Sbjct: 3   RAKKVVLAYSGGVDTSVCIPYLKHEWGVEEVI--TLA-ADLGQGDELEPIRKKALDAGAA 59

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
           + +         + D  E F      P   + A  E   P      R +    L+     
Sbjct: 60  QSL---------IADGTESFIADYAFPAIQANALYENRYPLSTALARPLIAKLLVEAAEI 110

Query: 136 LGADVLATG 144
            GAD +A G
Sbjct: 111 HGADAVAHG 119


>gi|90075554|dbj|BAE87457.1| unnamed protein product [Macaca fascicularis]
          Length = 561

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 40/130 (30%), Gaps = 41/130 (31%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D R+   +SGG+DSS V A LLK+        Y      LQ +                D
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLKQLKEAQVQ-YP-----LQTFAIGMEGSP--------D 295

Query: 73  VYDARRVCDTINVSHYVFDYEERF----RNAVI----------------VPFASSYAAGE 112
           +  AR+V + I   HY   +         + VI                +   S Y    
Sbjct: 296 LLAARKVANHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKN 355

Query: 113 TPLPCVDCNR 122
           T    +    
Sbjct: 356 TDNVVIFSGE 365


>gi|332019893|gb|EGI60354.1| Cytoplasmic tRNA 2-thiolation protein 1 [Acromyrmex echinatior]
          Length = 339

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V +  SGG DS+V+A +LK    R  Y++  + L   +      R  S        D  
Sbjct: 54  KVAIGASGGKDSTVLAYVLKTLNERYKYELD-LFLLSIDEGITGYRDDSLKTVTRNKD-- 110

Query: 78  RVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                  +   +  Y+E +     +    +          C  C    +   L      L
Sbjct: 111 ----DYGIPLKILSYKELYGWT--MDSIVAEIGR---KNNCTFCGVFRR-QALDRGAAIL 160

Query: 137 GADVLATGHYI 147
             D +ATGH  
Sbjct: 161 KVDCIATGHNA 171


>gi|242309483|ref|ZP_04808638.1| asparagine synthase [Helicobacter pullorum MIT 98-5489]
 gi|239524054|gb|EEQ63920.1| asparagine synthase [Helicobacter pullorum MIT 98-5489]
          Length = 628

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V +SGGVDSS+V A+LK  GY           S           +  + + A  V   
Sbjct: 266 VGVCLSGGVDSSLVCAVLKDAGY-----------SFDTFSISFLEASYDEGHYAEEVARV 314

Query: 83  INVSHYVF 90
           + V ++ F
Sbjct: 315 LGVKNHRF 322


>gi|223985929|ref|ZP_03635965.1| hypothetical protein HOLDEFILI_03271 [Holdemania filiformis DSM
           12042]
 gi|223962116|gb|EEF66592.1| hypothetical protein HOLDEFILI_03271 [Holdemania filiformis DSM
           12042]
          Length = 625

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +PK M+ +V +SGG+DSS+ +ALL    G   V+G  +                +     
Sbjct: 316 SPK-MKWIVGLSGGLDSSITSALLVYALGAQRVVGYNMA-----------SRYNSLTTKN 363

Query: 75  DARRVCDTINV 85
           +A+ + + + +
Sbjct: 364 NAKALAERLGI 374


>gi|197301463|ref|ZP_03166543.1| hypothetical protein RUMLAC_00195 [Ruminococcus lactaris ATCC
           29176]
 gi|197299501|gb|EDY34021.1| hypothetical protein RUMLAC_00195 [Ruminococcus lactaris ATCC
           29176]
          Length = 398

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 26/141 (18%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N  +L K     ++ V +SGG DS ++A L +          L+ +N      +     
Sbjct: 149 INEYELVKP--GDKIAVCISGGKDSMLMAKLFQE---------LKRHNKFDFEVKFLVMD 197

Query: 69  AGQDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            G    + + +      + +   +      F + +     S Y   ++  PC  C   ++
Sbjct: 198 PGYSPANRQVIEENAKRLEIPIEI------FESDIFE---SVYNVEKS--PCYLC-ARMR 245

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L S  +++G + +A GH+
Sbjct: 246 RGYLYSHAQKMGCNKIALGHH 266


>gi|149064973|gb|EDM15049.1| asparagine synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 586

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 275 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVPYALQTFAIGMEDSPDLLA 323

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 324 ARKVANYIGSEHHEVLFNSE 343


>gi|88601435|ref|YP_501613.1| argininosuccinate synthase [Methanospirillum hungatei JF-1]
 gi|119361291|sp|Q2FLD8|ASSY_METHJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|88186897|gb|ABD39894.1| argininosuccinate synthase [Methanospirillum hungatei JF-1]
          Length = 395

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+A SGG+D+S+   LLK + GYD V+ V      +    +RK      +     +R  
Sbjct: 6   VVLAYSGGLDTSICIPLLKEEYGYDRVVTV------AADVGQRKEEISIAE--EKGKRFA 57

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D     HY  D  ++F +  ++P   +    E         R V    ++ + ++  A  
Sbjct: 58  DK----HYTLDLIDQFVDRCLMPSIKANGLYEGYPMGTSLARPVIAEAVVEIAKKEDATA 113

Query: 141 LATG 144
           +A G
Sbjct: 114 VAHG 117


>gi|53712709|ref|YP_098701.1| putative cell-cycle protein [Bacteroides fragilis YCH46]
 gi|61216469|sp|Q64WF9|TILS_BACFR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
          Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
          Full=tRNA(Ile)-lysidine synthetase
 gi|52215574|dbj|BAD48167.1| putative cell-cycle protein [Bacteroides fragilis YCH46]
          Length = 435

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 20 DMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          + +V+V +SGG DS V    LL   GY         +   K S R        D    RR
Sbjct: 19 NDKVLVTLSGGADS-VALLRLLLSMGYTCEAAHCNFHLRDKESDR--------DEAFVRR 69

Query: 79 VCDTINVSHYVFDY 92
          +C    V  ++  +
Sbjct: 70 LCHESGVLLHIEHF 83


>gi|148747576|ref|NP_037211.2| asparagine synthetase [glutamine-hydrolyzing] [Rattus norvegicus]
 gi|91771192|sp|P49088|ASNS_RAT RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|51859420|gb|AAH81719.1| Asns protein [Rattus norvegicus]
 gi|149064974|gb|EDM15050.1| asparagine synthetase, isoform CRA_b [Rattus norvegicus]
 gi|1587645|prf||2207183A Asn synthetase
          Length = 561

 Score = 44.0 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVPYALQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANYIGSEHHEVLFNSE 318


>gi|319945132|ref|ZP_08019394.1| asparagine synthetase [Lautropia mirabilis ATCC 51599]
 gi|319741702|gb|EFV94127.1| asparagine synthetase [Lautropia mirabilis ATCC 51599]
          Length = 632

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG+DSSVV AL+ R           L    K            ++ DARRV   +   
Sbjct: 269 LSGGLDSSVVCALMTR----------HLSQPLKTFSIGFDEAGFDELPDARRVAQHLGTE 318

Query: 87  HY 88
           H+
Sbjct: 319 HH 320


>gi|308178041|ref|YP_003917447.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter arilaitensis
           Re117]
 gi|307745504|emb|CBT76476.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter arilaitensis
           Re117]
          Length = 528

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARR 78
           + +  +SGGVDS+V AAL++R  G  +  V +   L    +A + +              
Sbjct: 225 KAICGLSGGVDSAVAAALVQRAIGDQLTCVFVNHGLLREGEAEQVEKD-----------F 273

Query: 79  VCDTINVSHYVFDYEERF 96
           V  T     Y+ D  ERF
Sbjct: 274 VAST-GAKLYIADERERF 290


>gi|297537993|ref|YP_003673762.1| NAD+ synthetase [Methylotenera sp. 301]
 gi|297257340|gb|ADI29185.1| NAD+ synthetase [Methylotenera sp. 301]
          Length = 537

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++  A+     G + V  V +                A   V DA  + 
Sbjct: 278 VVLGLSGGVDSALTMAIAVDALGAEKVQAVMM-----------PSEFTADISVNDAAEMA 326

Query: 81  DTINVSH---YVFDYEERFRNAVIVPF 104
             + V +    + +  E FR A+   F
Sbjct: 327 KLLGVKYSQMPIANLYESFRVALADEF 353


>gi|229528754|ref|ZP_04418144.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)]
 gi|229332528|gb|EEN98014.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)]
          Length = 440

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSQVLLALLARGRDEFGWDVAAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|218883803|ref|YP_002428185.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765419|gb|ACL10818.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus
           kamchatkensis 1221n]
          Length = 339

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-----GYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           K+  ++VA+SGG DS  +  +L +      G+ V  V   L +      R+ +       
Sbjct: 47  KNEHIIVAVSGGKDSIALLHVLHKLSRKMPGWRVTAV---LVDEGIKGYREKTVENLVAY 103

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSV 132
                      V +++  + + +  A +        A   P  PC  C    ++  L   
Sbjct: 104 ------AAKNKVDYHIVSF-KEYIGASLDEIVEKGRARGLPYLPCSYCGVFRRY-VLNKA 155

Query: 133 TRQLGADVLATGHYI 147
            R+LG  V+AT H +
Sbjct: 156 ARRLGGTVIATAHNL 170


>gi|210622686|ref|ZP_03293308.1| hypothetical protein CLOHIR_01256 [Clostridium hiranonis DSM 13275]
 gi|210154087|gb|EEA85093.1| hypothetical protein CLOHIR_01256 [Clostridium hiranonis DSM 13275]
          Length = 399

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S+    LK             Y+  +     G+     ++ D  +   
Sbjct: 4   KVVLAYSGGLDTSITIPWLKE-----------NYDDIEVIACCGNVGQDDNMEDVYKKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                  YV D  E F    I     + A  E          R +    L+ V  + GA 
Sbjct: 53  ESGASKAYVDDISEEFVTTTIYAAIKAEAKYEGKYLLGTSLARPIIAKKLVEVAHKEGAK 112

Query: 140 VLATG 144
            +  G
Sbjct: 113 YICHG 117


>gi|124027805|ref|YP_001013125.1| NAD synthetase [Hyperthermus butylicus DSM 5456]
 gi|189030450|sp|A2BLB9|NADE_HYPBU RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|123978499|gb|ABM80780.1| NH(3)-dependent NAD(+) synthetase [Hyperthermus butylicus DSM 5456]
          Length = 276

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 50/185 (27%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+    LL R  G + V+ + +                  +DV+DA  + + + V + +
Sbjct: 45  DSTTTLYLLVRALGPERVLVLVM----------PDSDVTPEEDVHDAVGIAERLGVRYKL 94

Query: 90  FDYEERFRNAVIVPFASSY--AAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVLATGH 145
            D         I P  +SY  A GE P      N    V+ + L       G  V  TG 
Sbjct: 95  ID---------IKPIVASYLVAMGEAPDRRSKGNLRARVRMTLLYLYANMEGLLVAGTG- 144

Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205
                         R  +      +    Y   A           P+G + K  VR LA 
Sbjct: 145 -------------DRSELLIGYFTK----YGDGAVDF-------LPIGCLYKSQVRRLAL 180

Query: 206 EMGLD 210
            +G+ 
Sbjct: 181 HLGVP 185


>gi|68001234|ref|XP_669870.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56484537|emb|CAI01056.1| hypothetical protein PB300086.00.0 [Plasmodium berghei]
          Length = 175

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
           Q+QL    FPL    K  +R   ++  +   + ++++ +C         ++K        
Sbjct: 3   QKQLSKFLFPLSLSNKNYIRMFMKKNNITNYNPNETKGLCLYGNVHMHSLLKLYYKTKEY 62

Query: 242 EG-DIVHLNGQILGRHNG 258
           +G +I  +      +++G
Sbjct: 63  DGAEINGIEKNEAPQNDG 80


>gi|323702949|ref|ZP_08114606.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532080|gb|EGB21962.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 252

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 35/136 (25%)

Query: 22  RVVVAMSGGVDSSVVAAL----------LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +VVV +SGG DSS    L          LK+  +++  V L +               G 
Sbjct: 28  KVVVGVSGGKDSST--LLFFLNMYRHRYLKKIPFELHAVHLDM-------------GLGA 72

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D+   +  C  +N+   +       +   I              PC  C   ++   L +
Sbjct: 73  DLAPLKEFCHRLNIPLTI-------KKTDIGTILFDIRKET--NPCALC-ANLRRGALHN 122

Query: 132 VTRQLGADVLATGHYI 147
            T +LG + +A  H++
Sbjct: 123 TTLELGFNKVALAHHL 138


>gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
 gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
          Length = 476

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 20  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SY 68

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 69  EDLQFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 117 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 167

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 168 IRPLLGVTKEEIVDYCNKLNL 188


>gi|296209631|ref|XP_002751628.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing]
           [Callithrix jacchus]
          Length = 561

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAATLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANHIGSEHHEVLFNSE 318


>gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
 gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
          Length = 480

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SY 72

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 73  EDLQFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 121 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 171

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 172 IRPLLGVTKEEIVDYCNKLNL 192


>gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
 gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
          Length = 480

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SY 72

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 73  EDLQFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 121 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 171

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 172 IRPLLGVTKEEIVDYCNKLNL 192


>gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
 gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
 gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
 gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
 gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
 gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
 gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 480

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 24  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SY 72

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 73  EDLQFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 120

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 121 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 171

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 172 IRPLLGVTKEEIVDYCNKLNL 192


>gi|257388353|ref|YP_003178126.1| thiamine biosynthesis protein [Halomicrobium mukohataei DSM 12286]
 gi|257170660|gb|ACV48419.1| thiamine biosynthesis protein [Halomicrobium mukohataei DSM 12286]
          Length = 395

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
           VVV +SGG+DS V A  L + G  V+ V 
Sbjct: 188 VVVLLSGGIDSPVAAWKLLKRGCPVVPVY 216


>gi|205830654|sp|Q4K882|TTCA_PSEF5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 274

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       LL         ++++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLLHLQKVAPIKFEIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|170760165|ref|YP_001786978.1| exsB protein [Clostridium botulinum A3 str. Loch Maree]
 gi|254764325|sp|B1L1S2|QUEC_CLOBM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|169407154|gb|ACA55565.1| exsB protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 219

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYEEVIAVS---FDYNQKHKLELDC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   NV H++ D 
Sbjct: 50 DICKKYNVEHHILDL 64


>gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
 gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
          Length = 476

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 20  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SY 68

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 69  EDLQFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 117 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 167

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 168 IRPLLGVTKEEIVDYCNKLNL 188


>gi|70731809|ref|YP_261551.1| C32 tRNA thiolase [Pseudomonas fluorescens Pf-5]
 gi|68346108|gb|AAY93714.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 288

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       LL         ++++ V +           + 
Sbjct: 39  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLLHLQKVAPIKFEIVAVNM----------DQK 87

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 88  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 136

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 137 RGTLYTFADEIGATKMALGHH 157


>gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579]
 gi|61216614|sp|Q81J84|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579]
          Length = 476

 Score = 44.0 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 41/201 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYD------VIGV-TLQLYNSRKASKRKGSCCAG 70
             D  +VV +SGG DS  +   L     +      V  V  +   +            + 
Sbjct: 20  KNDSTIVVGVSGGPDSLALLYYLLEKRAEKQLEIVVAHVDHMFRGDE-----------SY 68

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +D+   + +C+ + +                    S Y         V   R  +++ L 
Sbjct: 69  EDLQFVQGLCEELGIICETIRIN-----------VSQYQQQYGMNAQVAA-RECRYAFLE 116

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
            + ++  A  +A GH+       GDD        + R     +  +             L
Sbjct: 117 RIMKKYDARYVALGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYL 167

Query: 189 RFPLGDMKKESVRDLAREMGL 209
             PL  + KE + D   ++ L
Sbjct: 168 IRPLLGVTKEEIVDYCNKLNL 188


>gi|322491890|emb|CBZ27163.1| putative argininosuccinate synthase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 419

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  RVV+A SGG+D+S++   LK +  Y+VI           A+  +G+         A+
Sbjct: 12  EKPRVVLAYSGGLDTSIIIPWLKENYDYEVIAC--------CANVGQGTGEIDGLEEKAK 63

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQL 136
           +   +     Y+ D  E +    + P   + A  E        + R +    L+ V  + 
Sbjct: 64  KSGAS---KLYLLDLREEYVKDYVFPTLKAGATYEGKYMLGTSHARPLIAKHLVEVAHKE 120

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 121 GAVAICHG 128


>gi|319786289|ref|YP_004145764.1| exsB protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317464801|gb|ADV26533.1| exsB protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 224

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V  +SGG+DS+VV A+ +  G+ V  +          S R G      ++  A RV 
Sbjct: 2  KKAVALVSGGMDSAVVLAIAREQGFAVHAL----------SVRYGQ-RHTSELDAAARVA 50

Query: 81 DTIN 84
            + 
Sbjct: 51 SALG 54


>gi|314932532|gb|EFS96363.1| NAD+ synthetase [Propionibacterium acnes HL067PA1]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|313826865|gb|EFS64579.1| NAD+ synthetase [Propionibacterium acnes HL063PA1]
 gi|314979103|gb|EFT23197.1| NAD+ synthetase [Propionibacterium acnes HL072PA2]
 gi|315089649|gb|EFT61625.1| NAD+ synthetase [Propionibacterium acnes HL072PA1]
 gi|327334026|gb|EGE75741.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL096PA3]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|313813912|gb|EFS51626.1| NAD+ synthetase [Propionibacterium acnes HL025PA1]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|313808558|gb|EFS47018.1| NAD+ synthetase [Propionibacterium acnes HL087PA2]
 gi|313819098|gb|EFS56812.1| NAD+ synthetase [Propionibacterium acnes HL046PA2]
 gi|313821625|gb|EFS59339.1| NAD+ synthetase [Propionibacterium acnes HL036PA1]
 gi|313823761|gb|EFS61475.1| NAD+ synthetase [Propionibacterium acnes HL036PA2]
 gi|314926101|gb|EFS89932.1| NAD+ synthetase [Propionibacterium acnes HL036PA3]
 gi|314960940|gb|EFT05041.1| NAD+ synthetase [Propionibacterium acnes HL002PA2]
 gi|314985915|gb|EFT30007.1| NAD+ synthetase [Propionibacterium acnes HL005PA2]
 gi|314989225|gb|EFT33316.1| NAD+ synthetase [Propionibacterium acnes HL005PA3]
 gi|315084910|gb|EFT56886.1| NAD+ synthetase [Propionibacterium acnes HL027PA2]
 gi|315087441|gb|EFT59417.1| NAD+ synthetase [Propionibacterium acnes HL002PA3]
 gi|327450400|gb|EGE97054.1| NAD+ synthetase [Propionibacterium acnes HL013PA2]
 gi|328757666|gb|EGF71282.1| NAD+ synthetase [Propionibacterium acnes HL020PA1]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|313794103|gb|EFS42123.1| NAD+ synthetase [Propionibacterium acnes HL110PA1]
 gi|313803224|gb|EFS44420.1| NAD+ synthetase [Propionibacterium acnes HL110PA2]
 gi|313839242|gb|EFS76956.1| NAD+ synthetase [Propionibacterium acnes HL086PA1]
 gi|314963998|gb|EFT08098.1| NAD+ synthetase [Propionibacterium acnes HL082PA1]
 gi|315078355|gb|EFT50392.1| NAD+ synthetase [Propionibacterium acnes HL053PA2]
 gi|315081448|gb|EFT53424.1| NAD+ synthetase [Propionibacterium acnes HL078PA1]
 gi|327334445|gb|EGE76156.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL097PA1]
 gi|327457535|gb|EGF04190.1| NAD+ synthetase [Propionibacterium acnes HL092PA1]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|295092929|emb|CBK82020.1| thiazole biosynthesis/tRNA modification protein ThiI [Coprococcus
           sp. ART55/1]
          Length = 395

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R +  +SGG+DS V A ++ + G  V  V         A          + +  A  V
Sbjct: 179 NGRGMALLSGGIDSPVAAYMIAKRGVVVEAVYFH------APPFTSERAKQKVIDLACLV 232

Query: 80  CDTIN-VSHYVFDYEE 94
            +    +  +V ++ +
Sbjct: 233 ANYSGAIRLHVVNFAD 248


>gi|289428164|ref|ZP_06429863.1| NAD+ synthetase [Propionibacterium acnes J165]
 gi|289158644|gb|EFD06848.1| NAD+ synthetase [Propionibacterium acnes J165]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|148825979|ref|YP_001290732.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittEE]
 gi|189030631|sp|A5UC48|THII_HAEIE RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|148716139|gb|ABQ98349.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittEE]
          Length = 485

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 42/228 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L      +   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGVAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
           +A+E+G    D + S         ++  V+ +     A+   IV   G
Sbjct: 327 MAKEIG--TDDIAKSM-------PEFCGVISKNPTIKAVREKIVTEEG 365


>gi|50843699|ref|YP_056926.1| NAD synthetase [Propionibacterium acnes KPA171202]
 gi|289425931|ref|ZP_06427683.1| NAD+ synthetase [Propionibacterium acnes SK187]
 gi|295131790|ref|YP_003582453.1| NAD+ synthetase [Propionibacterium acnes SK137]
 gi|50841301|gb|AAT83968.1| glutamine-dependent NAD(+) synthetase [Propionibacterium acnes
           KPA171202]
 gi|289153707|gb|EFD02416.1| NAD+ synthetase [Propionibacterium acnes SK187]
 gi|291375470|gb|ADD99324.1| NAD+ synthetase [Propionibacterium acnes SK137]
 gi|313765123|gb|EFS36487.1| NAD+ synthetase [Propionibacterium acnes HL013PA1]
 gi|313771610|gb|EFS37576.1| NAD+ synthetase [Propionibacterium acnes HL074PA1]
 gi|313812007|gb|EFS49721.1| NAD+ synthetase [Propionibacterium acnes HL083PA1]
 gi|313817151|gb|EFS54865.1| NAD+ synthetase [Propionibacterium acnes HL059PA1]
 gi|313832441|gb|EFS70155.1| NAD+ synthetase [Propionibacterium acnes HL007PA1]
 gi|313834129|gb|EFS71843.1| NAD+ synthetase [Propionibacterium acnes HL056PA1]
 gi|314916870|gb|EFS80701.1| NAD+ synthetase [Propionibacterium acnes HL005PA4]
 gi|314919048|gb|EFS82879.1| NAD+ synthetase [Propionibacterium acnes HL050PA1]
 gi|314921122|gb|EFS84953.1| NAD+ synthetase [Propionibacterium acnes HL050PA3]
 gi|314956238|gb|EFT00610.1| NAD+ synthetase [Propionibacterium acnes HL027PA1]
 gi|314958737|gb|EFT02839.1| NAD+ synthetase [Propionibacterium acnes HL002PA1]
 gi|314968763|gb|EFT12861.1| NAD+ synthetase [Propionibacterium acnes HL037PA1]
 gi|314975106|gb|EFT19201.1| NAD+ synthetase [Propionibacterium acnes HL053PA1]
 gi|314977516|gb|EFT21611.1| NAD+ synthetase [Propionibacterium acnes HL045PA1]
 gi|314985895|gb|EFT29987.1| NAD+ synthetase [Propionibacterium acnes HL005PA1]
 gi|315096853|gb|EFT68829.1| NAD+ synthetase [Propionibacterium acnes HL038PA1]
 gi|315100085|gb|EFT72061.1| NAD+ synthetase [Propionibacterium acnes HL059PA2]
 gi|315102754|gb|EFT74730.1| NAD+ synthetase [Propionibacterium acnes HL046PA1]
 gi|315107307|gb|EFT79283.1| NAD+ synthetase [Propionibacterium acnes HL030PA1]
 gi|327333034|gb|EGE74766.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL096PA2]
 gi|327448742|gb|EGE95396.1| NAD+ synthetase [Propionibacterium acnes HL043PA1]
 gi|327449063|gb|EGE95717.1| NAD+ synthetase [Propionibacterium acnes HL043PA2]
 gi|327455558|gb|EGF02213.1| NAD+ synthetase [Propionibacterium acnes HL087PA3]
 gi|327456216|gb|EGF02871.1| NAD+ synthetase [Propionibacterium acnes HL083PA2]
 gi|328756777|gb|EGF70393.1| NAD+ synthetase [Propionibacterium acnes HL087PA1]
 gi|328759059|gb|EGF72675.1| NAD+ synthetase [Propionibacterium acnes HL025PA2]
 gi|328762168|gb|EGF75664.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL099PA1]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           ++V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTDHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDMCRALGIPCEVLDIR 438


>gi|330811383|ref|YP_004355845.1| Putative transcription factor, ExsB family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
 gi|327379491|gb|AEA70841.1| Putative transcription factor, ExsB family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
          N  + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + ++ A
Sbjct: 6  NIAEKRAVILLSGGLDSATVVAMARAEGYRC--YTM--------SFDYGQRHRAE-LHAA 54

Query: 77 RRVCDTIN-VSHYVF 90
           RV   +  V H V 
Sbjct: 55 ERVARDLGVVEHKVI 69


>gi|291549805|emb|CBL26067.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus torques L2-14]
          Length = 388

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 26/141 (18%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +N  +L K     R+ V +SGG DS ++A L +          L+ +N      +     
Sbjct: 132 INEYELVKP--GDRIAVCISGGKDSMLMAKLFQE---------LKRHNKFDFEVKFLVMD 180

Query: 69  AGQDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
            G    + + +      + +   +      F + +     S Y   ++  PC  C   ++
Sbjct: 181 PGYSPANRQVIEENARRLEIPIEI------FESDIFE---SVYNIEKS--PCYLC-ARMR 228

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L S  +++G + +A GH+
Sbjct: 229 RGYLYSHAQKMGCNKIALGHH 249


>gi|258404447|ref|YP_003197189.1| hypothetical protein Dret_0309 [Desulfohalobium retbaense DSM 5692]
 gi|257796674|gb|ACV67611.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692]
          Length = 349

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 40/226 (17%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
             SGG+DS +   +L+  G  V+GV          +   G+               T ++
Sbjct: 11  LFSGGLDSILATKVLQAQGLRVLGVHF-------VTPFFGAPDRLAHWQ------RTYDI 57

Query: 86  SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV----L 141
                D  + F + ++         G+   PCVDC        LL + +Q  A      L
Sbjct: 58  PLQAIDAGQAFVDMLLA--GPESGFGKVLNPCVDCKI-----LLLQLAKQHMAAYSARFL 110

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPM------DLERDQSYFLFATTQQQL---CDLRFPL 192
           ATG  +  R         + I  +             Q     A  QQ +     L    
Sbjct: 111 ATGEVLGQRPMSQRSDTLQAIRKKADVEDILVRPLSAQLLPPSAVEQQGIVNREHLLSVR 170

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ----GKYFDVVKR 234
           G  +KE +R LA + G+   +       C + +     +Y+ ++KR
Sbjct: 171 GRGRKEQLR-LAEQFGIT--EIPQPAGGCLLTEPESAKRYWPLLKR 213


>gi|221633771|ref|YP_002522997.1| exsB protein [Thermomicrobium roseum DSM 5159]
 gi|221157005|gb|ACM06132.1| exsB protein [Thermomicrobium roseum DSM 5159]
          Length = 226

 Score = 44.0 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          ++   +  R VV +SGG+DS+ +A LL   G+ + G++ +                 +++
Sbjct: 1  MEPRKRSQRAVVLLSGGLDSTTLAYLLDAYGFVLYGLSFRY-----------GQRHEREL 49

Query: 74 YDARRVCDTINV-SHYVF 90
            AR + + +    H V 
Sbjct: 50 EAARAIAEKLRFAEHRVV 67


>gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 466

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 72/224 (32%), Gaps = 54/224 (24%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
           +L ++D D   K+ R ++A+S GVDS V   LL+        +  QL+   +     G  
Sbjct: 9   QLTAIDPD---KNRRFLLAVSTGVDSMV---LLQ--------IFCQLFPEMQKEPCFGVA 54

Query: 68  CAGQDVYDA--------RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP--- 116
                +  A        R+ C    +  Y     ER                    P   
Sbjct: 55  HVNHQLRPASAKEAAFLRQYCQERGIPFY-----ERCWE----------------NPPET 93

Query: 117 -CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175
                 R  +++    V  Q G DVL T H+   ++        R    R     + Q  
Sbjct: 94  GVEASARDFRYTFFADVMSQEGYDVLLTAHHSDDQVETMLMKMMREGRLRSAGGMQQQQP 153

Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
           F           L  PL  + K ++ D A+   +   +   + +
Sbjct: 154 FHTGV-------LLRPLLTVSKAAIYDYAQAQQIPYFEDESNHE 190


>gi|226711431|sp|B3LHQ7|CTU1_YEAS1 RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Needs CLA4 to survive protein 6; AltName:
           Full=Thiolation of uridine in cytoplasmic tRNA protein 1
 gi|226711432|sp|A6ZTX8|CTU1_YEAS7 RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Needs CLA4 to survive protein 6; AltName:
           Full=Thiolation of uridine in cytoplasmic tRNA protein 1
 gi|151943606|gb|EDN61916.1| protein with a role in urmylation and in invasive and pseudohyphal
           growth [Saccharomyces cerevisiae YJM789]
 gi|190407148|gb|EDV10415.1| VEG136 protein [Saccharomyces cerevisiae RM11-1a]
 gi|259146303|emb|CAY79560.1| Ncs6p [Saccharomyces cerevisiae EC1118]
          Length = 359

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V V  SGG DS+V+A +LK   D YD  G+ + L +  +             +   
Sbjct: 66  RGEKVAVGASGGKDSTVLAHMLKLLNDRYD-YGIEIVLLSIDEGIIGY----RDDSLATV 120

Query: 77  RRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R      +   +F +++ +             +       C  C    +   L     +
Sbjct: 121 KRNQQQYGLPLEIFSFKDLYDWT-----MDEIVSVAGIRNSCTYCGVFRR-QSLDRGAAK 174

Query: 136 LGADVLATGHYI 147
           LG   + TGH  
Sbjct: 175 LGISHVVTGHNA 186


>gi|157371885|ref|YP_001479874.1| NAD synthetase [Serratia proteamaculans 568]
 gi|157323649|gb|ABV42746.1| NAD+ synthetase [Serratia proteamaculans 568]
          Length = 540

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   +   E  F
Sbjct: 333 ILGIEFDIVSIEPMF 347


>gi|308812558|ref|XP_003083586.1| GMP synthetase (ISS) [Ostreococcus tauri]
 gi|116055467|emb|CAL58135.1| GMP synthetase (ISS) [Ostreococcus tauri]
          Length = 604

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           +K  KD  V+ A+SGGVDS+V A L+ + 
Sbjct: 237 EKVGKDAHVICALSGGVDSAVAATLVHKA 265


>gi|50593215|ref|NP_011304.2| Ncs6p [Saccharomyces cerevisiae S288c]
 gi|115502422|sp|P53088|CTU1_YEAST RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Needs CLA4 to survive protein 6; AltName:
           Full=Thiolation of uridine in cytoplasmic tRNA protein 1
 gi|285812005|tpg|DAA07905.1| TPA: Ncs6p [Saccharomyces cerevisiae S288c]
          Length = 359

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V V  SGG DS+V+A +LK   D YD  G+ + L +  +             +   
Sbjct: 66  RGEKVAVGASGGKDSTVLAHMLKLLNDRYD-YGIEIVLLSIDEGIIGY----RDDSLATV 120

Query: 77  RRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R      +   +F +++ +             +       C  C    +   L     +
Sbjct: 121 KRNQQQYGLPLEIFSFKDLYDWT-----MDEIVSVAGIRNSCTYCGVFRR-QSLDRGAAK 174

Query: 136 LGADVLATGHYI 147
           LG   + TGH  
Sbjct: 175 LGISHVVTGHNA 186


>gi|1655726|gb|AAC49498.1| unknown [Saccharomyces cerevisiae]
          Length = 317

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V V  SGG DS+V+A +LK   D YD  G+ + L +  +             +   
Sbjct: 66  RGEKVAVGASGGKDSTVLAHMLKLLNDRYD-YGIEIVLLSIDEGIIGY----RDDSLATV 120

Query: 77  RRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R      +   +F +++ +             +       C  C    +   L     +
Sbjct: 121 KRNQQQYGLPLEIFSFKDLYDWT-----MDEIVSVAGIRNSCTYCGVFRR-QSLDRGAAK 174

Query: 136 LGADVLATGHYI 147
           LG   + TGH  
Sbjct: 175 LGISHVVTGHNA 186


>gi|289742235|gb|ADD19865.1| uncharacterized conserved protein [Glossina morsitans morsitans]
          Length = 348

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
              +V +A SGG DS+V+A +L+     Y+  G+ L L +  +      +      +   
Sbjct: 49  SGQKVAIAASGGKDSTVLAHILRLLNQRYN-YGLELVLLSIDEG----ITGYRDDSLETV 103

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++  D   +   +  YEE +    + ++         G T   C  C    +   L    
Sbjct: 104 KKNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRT-NNCTFCGVFRR-QALDRGA 155

Query: 134 RQLGADVLATGHYI 147
           + L  D +ATGH  
Sbjct: 156 KLLKVDSIATGHNA 169


>gi|213692725|ref|YP_002323311.1| ExsB family protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|213524186|gb|ACJ52933.1| ExsB family protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
          Length = 251

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          RV + +SGG DS+ +   L   G ++  VT     +   ++ +           A+R+  
Sbjct: 7  RVALLLSGGPDSTTLLYDLLNQGKEIYAVTFNFGETEGCNESQH----------AQRIVT 56

Query: 82 TIN---VSHYVFDYEERFRN 98
           ++   + HY +D+ E+F+ 
Sbjct: 57 NLHSERLHHYQYDFSEQFKR 76


>gi|295839307|ref|ZP_06826240.1| glutamine-dependent NAD+ synthetase [Streptomyces sp. SPB74]
 gi|197696920|gb|EDY43853.1| glutamine-dependent NAD+ synthetase [Streptomyces sp. SPB74]
          Length = 586

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G + V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALCAAIACDAIGAEHVHGVSM-----------PSKYSSEHSKDDAADLA 376

Query: 81  DTINVSHYVFDYEERF 96
               + +        F
Sbjct: 377 ARTGLHYRTVPIAPMF 392


>gi|145630743|ref|ZP_01786521.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae R3021]
 gi|144983625|gb|EDJ91085.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae R3021]
          Length = 381

 Score = 44.0 bits (103), Expect = 0.049,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 71/222 (31%), Gaps = 38/222 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSSS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMGLDIADKSDSQ-DICFVQQG--KYFDVVKRINAGIAL 241
           +A+E+G    D + S  + C V     +    VKR      +
Sbjct: 327 MAKEIG--TDDIAKSMPEFCGVISKILRLKRFVKRFLKKKGI 366


>gi|326390922|ref|ZP_08212473.1| GMP synthase, large subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993070|gb|EGD51511.1| GMP synthase, large subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 512

 Score = 43.6 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V A+SGGVDSSV A L+ R  +D ++ +     ++    K +G             
Sbjct: 217 KHKAVCALSGGVDSSVAAVLVDRAIHDQLVCIF---VDTGLLRKNEGDMVIETFR----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D  +RF + +     S           +  N  +          ++G 
Sbjct: 269 --KNYDMNIIRVDARDRFLSRLKGVTDSEEKRK------IIGNVFI--EVFKEEALKIGD 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        V + G       +           +    +    +L  PL  + K
Sbjct: 319 VKFLVQG---TLYPDVIESGNGVSSTIKSHHN-------VGGLPEDIGFELIEPLRMLFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+G+ 
Sbjct: 369 DEVRQVGKELGIP 381


>gi|307175621|gb|EFN65530.1| ATP-binding domain-containing protein 3 [Camponotus floridanus]
          Length = 336

 Score = 43.6 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 24/134 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V +  SGG DS+V+A +LK    R  Y   G+ L L +  +     G      D    +
Sbjct: 52  KVAIGASGGKDSTVLAYVLKTLNERHKY---GLDLFLLSIDE-----GITGYRDDSL--K 101

Query: 78  RVC---DTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            V    D   +   +  Y+E +     +    +          C  C    +   L    
Sbjct: 102 TVAQNRDDYGIPLKILSYKELYGWT--MDSIVTEIGR---KNNCTFCGVFRR-QALDRGA 155

Query: 134 RQLGADVLATGHYI 147
             LG D + TGH  
Sbjct: 156 AILGVDCIVTGHNA 169


>gi|291320647|ref|YP_003515912.1| NH(3) dependent NAD(+) synthetase [Mycoplasma agalactiae]
 gi|290752983|emb|CBH40959.1| NH(3) dependent NAD(+) synthetase [Mycoplasma agalactiae]
          Length = 270

 Score = 43.6 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 48/191 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG+DS++VA+L  +   +   G+ +                   D+ D  ++   
Sbjct: 46  VVGISGGIDSALVASLCAKAFPNNTLGLVM------------PIDSMNHDLEDISKLERA 93

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADV 140
           IN+       ++ F               +        N    ++   L +  +Q     
Sbjct: 94  INLKFKTVLLDKSFDE------VKKSLNNDVDNLLSISNIKPRLRMIALYAYAQQ----- 142

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL-RFPLGDMKKES 199
                   + L +G D                  YF+   T+     +   P+  + K  
Sbjct: 143 -------NNYLVMGTD--------------NQDEYFIGYFTKHGDGGVDLLPISKLLKSE 181

Query: 200 VRDLAREMGLD 210
           VR +A+ + + 
Sbjct: 182 VRMMAKYLNMP 192


>gi|260881079|ref|ZP_05403553.2| NAD synthase family protein [Mitsuokella multacida DSM 20544]
 gi|260849451|gb|EEX69458.1| NAD synthase family protein [Mitsuokella multacida DSM 20544]
          Length = 633

 Score = 43.6 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 4/29 (13%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
            ++V+ +SGG+DS+V AAL  +    V+G
Sbjct: 320 KKIVIGISGGIDSAVAAALYAK----VVG 344


>gi|254168750|ref|ZP_04875592.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Aciduliprofundum boonei T469]
 gi|197622376|gb|EDY34949.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Aciduliprofundum boonei T469]
          Length = 385

 Score = 43.6 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 52/225 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++ +S G+DS V A L+ + G  +I + ++  +S               V   +++ +
Sbjct: 193 KLIMLISSGIDSPVAAYLMMKRGAKIIALHMKHSDSG--------------VEKVKKILE 238

Query: 82  TI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTR 134
            +       +   V ++ E     +       +    T   CV C    +K +D   +  
Sbjct: 239 VLEQYSPRKIELVVKNHYEELSK-ISDKLREMHRERWT---CVFCKYTMLKIAD--RIAN 292

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GA  + TG  +        +                  Y     T   +     PL  
Sbjct: 293 KYGALGIVTGDSLGQVASQTLENM----------------YIESQATSYPIYR---PLIG 333

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICF------VQQGKYFDVVK 233
           M K  +  +A+ +G         ++ C       V QG Y +  K
Sbjct: 334 MDKNEIEGIAKNIGTYNVFLEGGEEKCPFKAKYVVVQGNYEEFEK 378


>gi|27367747|ref|NP_763274.1| argininosuccinate synthase [Vibrio vulnificus CMCP6]
 gi|27359320|gb|AAO08264.1|AE016813_16 Argininosuccinate synthase [Vibrio vulnificus CMCP6]
          Length = 404

 Score = 43.6 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   V+   SGG+DSS +  +LK     V  V + L +  + SK              + 
Sbjct: 16  QAKHVLTLFSGGLDSSYLLEILKNSRAKVTAVAIDLGDDIEESKL-------------KL 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
           + D       + D ++ F    +     + A      P     +R +     + + + L 
Sbjct: 63  ITDHYGFDLNILDAKQEFVEHSLFSAIQAQALYLGDYPVSSSLSRPIIVKKAVELAQILS 122

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            D +              +G   R   +         Y   A ++++     F
Sbjct: 123 CDAIIHTANQSQNSLRRLNGAIERSGYQGFYGS---PYEYSAISREEKAQTLF 172


>gi|167042344|gb|ABZ07072.1| putative arginosuccinate synthase [uncultured marine crenarchaeote
           HF4000_ANIW97M7]
          Length = 395

 Score = 43.6 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + V+A SGG+D+SVV   L+              +    +   G      D       
Sbjct: 2   KQKAVLAFSGGLDTSVVVKYLQEK---------HNMDVVTVTVDVGQ---EDDYKKISAK 49

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC--NRTVKFSDLLSVTRQL 136
              + V  HY  D  + F +  I P   + A  +    C+     R +    +L + ++ 
Sbjct: 50  AKKLGVKKHYNIDARKEFVSDYIFPAIKANALYQKKY-CLATALARPLIARKVLQIAKKE 108

Query: 137 GADVLATG 144
               LA G
Sbjct: 109 KVTSLAHG 116


>gi|114776946|ref|ZP_01451989.1| argininosuccinate synthase [Mariprofundus ferrooxydans PV-1]
 gi|114553032|gb|EAU55463.1| argininosuccinate synthase [Mariprofundus ferrooxydans PV-1]
          Length = 407

 Score = 43.6 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 65/203 (32%), Gaps = 64/203 (31%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P+  + V+A SGG+D+S++ + L+   YD   VT                  G +V DAR
Sbjct: 4   PEVKKAVLAYSGGLDTSIILSWLQNT-YDCEVVTF-----------TADLGQGDEVEDAR 51

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
                  V S Y+ D  E F    + P           Y  G +    +   R +     
Sbjct: 52  AKAKAGGVSSIYIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRMI----- 106

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
             +    GA+ ++ G                           DQ              +R
Sbjct: 107 -EIANAEGANAVSHG---------------------ATGKGNDQ--------------VR 130

Query: 190 FPLGDM-KKESVRDLA--REMGL 209
           F LG    K  V+ +A  RE  L
Sbjct: 131 FELGFYALKPDVKVIAPWREWDL 153


>gi|307353472|ref|YP_003894523.1| argininosuccinate synthase [Methanoplanus petrolearius DSM 11571]
 gi|307156705|gb|ADN36085.1| argininosuccinate synthase [Methanoplanus petrolearius DSM 11571]
          Length = 394

 Score = 43.6 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
             ++V+A SGG+D+S+   LLK + GYD VI  T+ +   +     K +   G  + D  
Sbjct: 3   KGKIVLAFSGGLDTSICVPLLKEEYGYDEVI--TVAVDVGQPEEDIKKATDKGHLIAD-- 58

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                    H+  D +++F    + P   +  + E         R +   +++ + ++ G
Sbjct: 59  --------KHFTIDIKDKFVEEQLFPTIKANGSYEGYPMGTALARPLIAEEIVKIAKKEG 110

Query: 138 ADVLATG 144
           A+ +A G
Sbjct: 111 ANAVAHG 117


>gi|300313487|ref|YP_003777579.1| cell cycle control ATPase [Herbaspirillum seropedicae SmR1]
 gi|300076272|gb|ADJ65671.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score = 43.6 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 20/125 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V +SGG DSS +  L K+ G   + V     +NS  A+                +V D 
Sbjct: 97  IVGVSGGTDSSYLVHLAKQWGLRPLAVHYDNTWNSAIATMN------------IHKVLDG 144

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADVL 141
           + V  Y      +  + +   F  S  A       ++ +  + ++ LL  V  +     +
Sbjct: 145 LGVDLYTHVVANKEADDIFRSFFLSGVAE------IEASTDLGYAYLLRKVAAKYSIKYI 198

Query: 142 ATGHY 146
             GH 
Sbjct: 199 LEGHS 203


>gi|153825370|ref|ZP_01978037.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2]
 gi|149741054|gb|EDM55123.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSRVLLALLARGRDEFGWDVAAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     +     D
Sbjct: 70 RCCREVGMACQIEFVQLD 87


>gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
           DSM 19965]
 gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
           DSM 19965]
          Length = 466

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 74/236 (31%), Gaps = 51/236 (21%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA------- 69
             K  ++++A+SGG DS              +G+ L +   + +      CC        
Sbjct: 3   WTKKDKILLAVSGGPDS--------------LGLLLAMNELKSSEGFSIGCCTIDHHLRK 48

Query: 70  --GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              ++V    ++C+ + +   V D        V      S  + ET        R +++ 
Sbjct: 49  ESAEEVIYVNKICEELGIDCKVIDI------NVKERQEESNKSCETAA------RELRYE 96

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            L  +  +     +A  H+   +            + R   +    +       ++    
Sbjct: 97  ALKEIFTKYKYTKIALAHHSDDQAE-----TVIHRLIRGGGM----TGLSGMLPKR--EY 145

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK----YFDVVKRINAGI 239
              P   + K+ ++    E     A    + DI  V + K        +K+ N  I
Sbjct: 146 FIRPFLAVTKKEIQAYIDEFPYIPAHDKTN-DIPDVTRNKIRLQLIPYLKKYNPNI 200


>gi|317133212|ref|YP_004092526.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471191|gb|ADU27795.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 457

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 25/135 (18%)

Query: 23  VVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V+ A SGG DS+ +  LL       G  V    L      + + R        D    R 
Sbjct: 19  VLAAFSGGADSTALLHLLCALREEWGLRVFAAHLNHGLRGEEADR--------DEAFVRA 70

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            C    V  +V       R  V         A  T      C R ++++        LGA
Sbjct: 71  RCVEWGVPCFVR------RTDV------RAEAARTGESEELCGRRLRYAFFAEQAEALGA 118

Query: 139 DVLATGHYIRSRLYV 153
             +AT H +   +  
Sbjct: 119 -KIATAHTLSDSVET 132


>gi|268325116|emb|CBH38704.1| hypothetical protein, asparagine synthase and DUF71 family
           [uncultured archaeon]
          Length = 711

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 22/177 (12%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           P D R  V  SGG+DS+++A L K  G D +  T        A +  G     +D+  A+
Sbjct: 229 PPDERFGVLFSGGLDSTLIAYLCKELGADFVCYT-------VAVEEPGM-KDAEDLDYAK 280

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++   + +   +          V+        +       V  +  +         R  G
Sbjct: 281 QIAADLGLKLKLIKMRA----DVLEKPLHEVVSWIDDTDVVKVSVALPLYVACEHARAEG 336

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD-----QSYFLFAT-TQQQLCDL 188
              L  G            G RR    +P +L  +     Q  +       +Q+   
Sbjct: 337 IKTLLYGLGTEELFA----GYRRHKHVKPEELNTECLSGIQWLYESDLYRDEQVARA 389


>gi|255036457|ref|YP_003087078.1| GMP synthase [Dyadobacter fermentans DSM 18053]
 gi|254949213|gb|ACT93913.1| GMP synthase, large subunit [Dyadobacter fermentans DSM 18053]
          Length = 509

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL 39
            L K   + +VV+A+SGGVDS+V A L
Sbjct: 206 QLRKKLGNDKVVMALSGGVDSTVAATL 232


>gi|262201680|ref|YP_003272888.1| GMP synthase large subunit [Gordonia bronchialis DSM 43247]
 gi|262085027|gb|ACY20995.1| GMP synthase, large subunit [Gordonia bronchialis DSM 43247]
          Length = 535

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 230 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 262


>gi|261349498|ref|ZP_05974915.1| PP-loop family protein [Methanobrevibacter smithii DSM 2374]
 gi|288861862|gb|EFC94160.1| PP-loop family protein [Methanobrevibacter smithii DSM 2374]
          Length = 336

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ ++ +A SGG DS+++A L  +     I +T+  +                 +   ++
Sbjct: 15 KNRKIAIAFSGGADSTLLAYLASKVSDKPIAITIDNH-----------IFPTGFIKHCKK 63

Query: 79 VCDTINVSHYVFDY 92
                + H V D 
Sbjct: 64 TAKEFGIKHKVIDL 77


>gi|219685276|ref|ZP_03540096.1| NAD+ synthetase [Borrelia garinii Far04]
 gi|219673372|gb|EED30391.1| NAD+ synthetase [Borrelia garinii Far04]
          Length = 512

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G + V+G+++           KGS      + DA+ +
Sbjct: 259 KVHLGISGGIDSALVACLACFALGAENVVGISM-----PSKFSSKGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFR 97
              +         ++ F 
Sbjct: 308 SRKLGFELIEMPIKDLFE 325


>gi|120402525|ref|YP_952354.1| GMP synthase [Mycobacterium vanbaalenii PYR-1]
 gi|119955343|gb|ABM12348.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 522

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 217 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 249


>gi|46201268|ref|ZP_00055430.2| COG0603: Predicted PP-loop superfamily ATPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 229

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 67/215 (31%), Gaps = 37/215 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+ V A+ K +G+    +T +                  ++  A RV   +
Sbjct: 7   IVLLSGGLDSATVLAIAKAEGFTPSALTFRY-----------GQRHAVEIRAAERVAAAL 55

Query: 84  --------NVSHYVFDYEERFRN-AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                   ++   VF       + AV             P+  V    T+  S  L+   
Sbjct: 56  RVSDHRVADIDLRVFGGSALTSDIAVPKGNLDEAIPEGIPVTYVPARNTIMLSFALAFAE 115

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF---- 190
            LGA  +  G          D        CRP D  +         T+  +   R     
Sbjct: 116 VLGAADIFVGVNAVDYSGYPD--------CRP-DYIKAFEAMANLATKAAVEGTRMTLHT 166

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
           PL D+ K  +       GL +         C+   
Sbjct: 167 PLIDLTKADII----RRGLALGVDYSLTSTCYDPD 197


>gi|307213343|gb|EFN88795.1| Argininosuccinate synthase [Harpegnathos saltator]
          Length = 412

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 29/135 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V++A SGG+D+S +   L+  G+ V+                 +    +D+   R+
Sbjct: 4   SKKKVILAYSGGLDTSCILFWLREKGFQVVA-------------YVANIGQNEDLDAVRK 50

Query: 79  VCDTIN-VSHYVFDYEERFRNAVIVPFASS-------YAAGET-PLPCVDCNRTVKFSDL 129
               I  V   + D +E F  + + P  +        Y  G +   PC+          L
Sbjct: 51  KALKIGAVKVVIDDVKEAFVTSYVWPAVACGLLYEGRYLLGTSIARPCISQG-------L 103

Query: 130 LSVTRQLGADVLATG 144
           + + R  GA ++A G
Sbjct: 104 IRIARAEGAGIIAHG 118


>gi|291533322|emb|CBL06435.1| NH(3)-dependent NAD(+) synthetase [Megamonas hypermegale ART12/1]
          Length = 632

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 50/224 (22%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIG---VTLQLYNSRK 59
           + +A         KN +  +V++ +SGG+DS+V +AL      D++G   +TL    S+ 
Sbjct: 299 IYQALHYGIKKFLKNIRMQKVIIGISGGIDSAVASALYA----DILGAENITLINMPSKF 354

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
            S       +        ++   +  ++ +   +E     V+    + +    T +  + 
Sbjct: 355 NSATTKGLSS--------QLAHNLGCNYAIVPIQE-----VVDFTVNQFE--NTDITHLA 399

Query: 120 CN--RTVKFSDLLSV---TRQLGADVLAT-----GHYIRSRLYVGDDGKRRRIMCRPMDL 169
            N    V+ S  +      R   A +LA      G          +       +      
Sbjct: 400 TNDIHKVQVSSFVKENIQARDRSARILAGMAASIGGCFTCNANKAETTVGYSTLYG---- 455

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIAD 213
             DQS FL              L D+ K  V +LA  +   +  
Sbjct: 456 --DQSGFLAG------------LADLWKYQVYELAHYLNEHVYK 485


>gi|73947845|ref|XP_854565.1| PREDICTED: hypothetical protein XP_849472 [Canis familiaris]
          Length = 238

 Score = 43.6 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +GV+L+L     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRELAPR-LGVSLRL----VAVDEGIGGYRDAALAAVRRQAAL 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            ++   V  Y + F    +   A S A +G +   C  C   ++   L    R +GA  +
Sbjct: 109 WDLPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCG-VLRRRALEEGARLVGATHI 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|317497510|ref|ZP_07955829.1| rhodanese-like domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895193|gb|EFV17356.1| rhodanese-like domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 404

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 30/134 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ ++ + +SGG DS ++A L +         +D++ + +                   +
Sbjct: 160 ENDKIAICISGGKDSMLMAKLFQELKRHNKFHFDLVFLVM-----DPGYNEMNRQIIENN 214

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     +++   V      F + +     + Y   ++  PC  C   ++   L S 
Sbjct: 215 -------AKLLDIPITV------FESDIFD---AVYEIEKS--PCYLC-ARMRRGYLYSK 255

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A GH+
Sbjct: 256 AKELGCNKIALGHH 269


>gi|291558374|emb|CBL37174.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SSC/2]
          Length = 404

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 30/134 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ ++ + +SGG DS ++A L +         +D++ + +                   +
Sbjct: 160 ENDKIAICISGGKDSMLMAKLFQELKRHNKFHFDLVFLVM-----DPGYNEMNRQIIENN 214

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     +++   V      F + +     + Y   ++  PC  C   ++   L S 
Sbjct: 215 -------AKLLDIPITV------FESDIFD---AVYEIEKS--PCYLC-ARMRRGYLYSK 255

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A GH+
Sbjct: 256 AKELGCNKIALGHH 269


>gi|291531135|emb|CBK96720.1| argininosuccinate synthase [Eubacterium siraeum 70/3]
          Length = 408

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S++   L  +  G +VI V              G+     ++     
Sbjct: 6   KKIVLAYSGGLDTSIIIPWLHENYPGCEVICV-------------AGNVGQDSEIVGLEE 52

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLS 131
                     Y+ D ++ F N  I P          Y  G +        R      L+ 
Sbjct: 53  RAKKTGASKLYIEDIQDEFVNDFIFPTLKAGAKYEGYLLGTSFA------RPPIAKRLVE 106

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +  G
Sbjct: 107 IAKKEGADAICHG 119


>gi|256545604|ref|ZP_05472962.1| GMP synthase [Anaerococcus vaginalis ATCC 51170]
 gi|256398681|gb|EEU12300.1| GMP synthase [Anaerococcus vaginalis ATCC 51170]
          Length = 511

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 32/192 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++  +SGGVDS++ A L+ +  G D+  +     +     K +      Q         
Sbjct: 218 KMICGLSGGVDSTIAATLVHKAIGNDLQCIF---VDHGLLRKNEAKSVMEQY-------- 266

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139
             I ++  + D  + F + +                 +  N  +         ++ G A 
Sbjct: 267 KKIGLNVKMVDASKEFLDLLKG--VEEPEEKRK----IIGNHFI--EVFEREAKKFGDAK 318

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-CDLRFPLGDMKKE 198
            L  G        V + GK +  + +           +    +  L   +  PL ++ K+
Sbjct: 319 YLVQG---TIYPDVIESGKGKGSVIKSHHN-------VGGLPEDMLFEGVVEPLRELFKD 368

Query: 199 SVRDLAREMGLD 210
            VR L   +G+ 
Sbjct: 369 EVRALGESIGVP 380


>gi|226324108|ref|ZP_03799626.1| hypothetical protein COPCOM_01886 [Coprococcus comes ATCC 27758]
 gi|225207657|gb|EEG90011.1| hypothetical protein COPCOM_01886 [Coprococcus comes ATCC 27758]
          Length = 377

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 30/135 (22%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  R+ V +SGG DS ++A L +         ++V  + +           +      +
Sbjct: 135 KEGDRIAVCISGGKDSMLMAKLFQELKRHNKFNFEVKFLVM-----DPGYSPENRKVIEE 189

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +          + +   +      F + +         +     PC  C   ++   L +
Sbjct: 190 N-------ARKMKIPIQI------FESNIFESVFEIEKS-----PCYIC-ARMRRGYLYN 230

Query: 132 VTRQLGADVLATGHY 146
             +Q+G + +A GH+
Sbjct: 231 FAQQMGCNKIALGHH 245


>gi|167766681|ref|ZP_02438734.1| hypothetical protein CLOSS21_01187 [Clostridium sp. SS2/1]
 gi|167711618|gb|EDS22197.1| hypothetical protein CLOSS21_01187 [Clostridium sp. SS2/1]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 30/134 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ ++ + +SGG DS ++A L +         +D++ + +                   +
Sbjct: 194 ENDKIAICISGGKDSMLMAKLFQELKRHNKFHFDLVFLVM-----DPGYNEMNRQIIENN 248

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     +++   V      F + +     + Y   ++  PC  C   ++   L S 
Sbjct: 249 -------AKLLDIPITV------FESDIFD---AVYEIEKS--PCYLC-ARMRRGYLYSK 289

Query: 133 TRQLGADVLATGHY 146
            ++LG + +A GH+
Sbjct: 290 AKELGCNKIALGHH 303


>gi|332159445|ref|YP_004424724.1| asparagine synthetase, putative [Pyrococcus sp. NA2]
 gi|331034908|gb|AEC52720.1| asparagine synthetase, putative [Pyrococcus sp. NA2]
          Length = 475

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 45/215 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + +V V  SGG+DSS++A +     Y  V+     LY S     +        D+  AR+
Sbjct: 237 NKKVGVLFSGGLDSSLIAKIASE--YSKVV-----LYTSGTEDSK--------DIEWARK 281

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQL 136
           V D + +      + +    A +     +      P P    N  +           ++ 
Sbjct: 282 VADELGLKLRESVFSKEDVEAELERIMFAIEE---PNP---MNLAIAIPLYFSTKKAKED 335

Query: 137 GADVLATGH--------YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT----TQQQ 184
           G  +L +G         Y +     G   K    +        D+   L           
Sbjct: 336 GVKILLSGQGADELFGGYAKYMENPGLMLKDIEELGEKNLARDDKVSMLNGVEVRYPYLD 395

Query: 185 LCDLRF----PL-----GDMKKESVRDLAREMGLD 210
           L         PL     G+ +K  +R++A++MGL 
Sbjct: 396 LPLAILALNVPLELKINGNRRKVILREVAKKMGLP 430


>gi|219851826|ref|YP_002466258.1| NAD+ synthetase [Methanosphaerula palustris E1-9c]
 gi|219546085|gb|ACL16535.1| NAD+ synthetase [Methanosphaerula palustris E1-9c]
          Length = 238

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 2/31 (6%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
          VV +SGG+DS+V AAL  R  G + V+GV+L
Sbjct: 15 VVGLSGGIDSAVAAALCCRAVGPEQVLGVSL 45


>gi|145588869|ref|YP_001155466.1| NAD+ synthetase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047275|gb|ABP33902.1| NAD+ synthetase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 539

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDS++V A+     G D V  V +                A     DAR + 
Sbjct: 285 VIIGLSGGVDSALVLAVAVDALGADKVRAVMMA-----------SRYTADISWIDARELA 333

Query: 81  DTINVSH 87
           D + V +
Sbjct: 334 DNLGVRY 340


>gi|261350859|ref|ZP_05976276.1| putative asparagine synthetase [glutamine-hydrolyzing] 1
           [Methanobrevibacter smithii DSM 2374]
 gi|288860475|gb|EFC92773.1| putative asparagine synthetase [glutamine-hydrolyzing] 1
           [Methanobrevibacter smithii DSM 2374]
          Length = 475

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGGVDSS++A LL+          + L  + K +         +DV  A+ V + 
Sbjct: 235 VGVIFSGGVDSSLIALLLRE---------ISLNKNLKVTLYAVGKKNSKDVVAAKCVAEY 285

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           + +   V D  E    +++                +  N  +K  
Sbjct: 286 LGLPLKVHDITE----SIVKDSLKDVVQA------IGENNLMKIG 320


>gi|218885155|ref|YP_002434476.1| argininosuccinate synthase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|226729177|sp|B8DN64|ASSY_DESVM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|218756109|gb|ACL07008.1| Argininosuccinate synthase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 401

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 32/135 (23%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   +    G +V+ +T  L                 D  DA+ +
Sbjct: 6   KKVVLAYSGGLDTSVILKWIAVTYGCEVVTLTADLGQEED-----------LDGVDAKAL 54

Query: 80  ---CDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
                      YV D  E F    I P   S       Y  G +    +   R      L
Sbjct: 55  RTGASRA----YVEDLREEFARDFIFPMMRSGAVYEGRYLLGTSIARPLIAKR------L 104

Query: 130 LSVTRQLGADVLATG 144
           + + R  GA  +A G
Sbjct: 105 VDIARAEGAQAVAHG 119


>gi|170717619|ref|YP_001784700.1| thiamine biosynthesis protein ThiI [Haemophilus somnus 2336]
 gi|189030633|sp|B0UUA1|THII_HAES2 RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|168825748|gb|ACA31119.1| thiamine biosynthesis/tRNA modification protein ThiI [Haemophilus
           somnus 2336]
          Length = 484

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 38/201 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGATHEIGVKQMAYHIW--KRFSGS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++ G   + 
Sbjct: 235 HKVRFVAINF-----EQVVAEILEKVDNGQMGVVL----KRMMVRAASKVAQRFGIQAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKESVR 201
           TG                      +     Q+        +    L   PL    KE + 
Sbjct: 286 TGE--------------------ALGQVSSQTLTNLRLIDEVAESLVLRPLITHDKEQII 325

Query: 202 DLAREMGLDIADKSDSQ-DIC 221
             A+E+G    D + S  + C
Sbjct: 326 AKAKEIG--TEDIAKSMPEFC 344


>gi|150006134|ref|YP_001300878.1| hypothetical protein BVU_3645 [Bacteroides vulgatus ATCC 8482]
 gi|254883522|ref|ZP_05256232.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775313|ref|ZP_06740836.1| PP-loop family protein [Bacteroides vulgatus PC510]
 gi|319641690|ref|ZP_07996373.1| hypothetical protein HMPREF9011_01971 [Bacteroides sp. 3_1_40A]
 gi|149934558|gb|ABR41256.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836315|gb|EET16624.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450890|gb|EFG19367.1| PP-loop family protein [Bacteroides vulgatus PC510]
 gi|317386664|gb|EFV67560.1| hypothetical protein HMPREF9011_01971 [Bacteroides sp. 3_1_40A]
          Length = 251

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 45/139 (32%)

Query: 22  RVVVAMSGGVDS----------SVVAALLKRDGYDVIGVT--LQLYNSRKASKRKGSCCA 69
           ++++ +SGG DS          S    +LK   + VI V   +                 
Sbjct: 33  KILIGLSGGKDSLALLELLARRS---RILKPK-FTVIAVHVGMTNI------------PY 76

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFS 127
             D+   +   + + V                 P   +  +     PC     NR     
Sbjct: 77  QSDLEYLKGYSEDLGVPF-------VHYETFFDPSTDTRKS-----PCFLCSWNRR---K 121

Query: 128 DLLSVTRQLGADVLATGHY 146
            L +V ++ G + +A GH+
Sbjct: 122 ALFTVAKEQGCNKIALGHH 140


>gi|170723150|ref|YP_001750838.1| exsB protein [Pseudomonas putida W619]
 gi|254764369|sp|B1JD61|QUEC_PSEPW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|169761153|gb|ACA74469.1| exsB protein [Pseudomonas putida W619]
          Length = 224

 Score = 43.6 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ K +GY     T+        S   G     + +  A RV
Sbjct: 3  EKRAVILLSGGLDSATVVAMAKAEGYSC--YTM--------SFDYGQRHRAE-LNAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARDLGVVEHKVI 63


>gi|302338916|ref|YP_003804122.1| GMP synthase, large subunit [Spirochaeta smaragdinae DSM 11293]
 gi|301636101|gb|ADK81528.1| GMP synthase, large subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 515

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 71/204 (34%), Gaps = 26/204 (12%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           S  + K   D  V++ +SGGVDSSVVA +L     D   V   L        RKG     
Sbjct: 203 SASIKKRVGDHPVLLLISGGVDSSVVAGVLLSA-LDPEKVH--LMYIDTGLMRKGET--- 256

Query: 71  QDVYDARRVCDTINVSHY-VFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                 R+  + +  +H  + D  +RF      V  P       G+  +     +   K 
Sbjct: 257 ---EAVRKSLEALGATHLSIIDAGDRFLHALEGVDDPEEKRRIIGDLFVEVQKSDIVGKI 313

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                     G   LA G      +  G    +   + +     R  S  + A     + 
Sbjct: 314 D---------GDYFLAQGTLYTDLIESGKGVGKNAKVIKSHHNVR--SPLIEAKRNAGM- 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL  + K+ VR L R +GL 
Sbjct: 362 -IIEPLDRLYKDEVRRLGRLIGLS 384


>gi|126657598|ref|ZP_01728753.1| NAD(+) synthetase [Cyanothece sp. CCY0110]
 gi|126621054|gb|EAZ91768.1| NAD(+) synthetase [Cyanothece sp. CCY0110]
          Length = 561

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 46/154 (29%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDS--------------SVVAALLKRDGYDVIGVTLQL 54
           L   D  K  +  +VV+ +SGG+DS                          +V+GV +  
Sbjct: 293 LGLKDYAKKCQFTKVVLGLSGGIDSALVAAIAAEAIGEK------------NVLGVLM-- 338

Query: 55  YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR--NAVIVPFASSYAAGE 112
                         +   + DA+++   + ++H++    E  +  + V+ P  S    G 
Sbjct: 339 ---------PSPYSSDHSIKDAKKLVKNLGINHHILPIGEVMKTYDQVLDPLFSETEFG- 388

Query: 113 TPLPCVDCN--RTVKFSDLLSVTRQLGADVLATG 144
                 + N    ++ + L+++  + G  +L+TG
Sbjct: 389 ----VAEENLQARIRGNLLMALANKFGYLLLSTG 418


>gi|91205311|ref|YP_537666.1| trans-regulatory protein ExsB [Rickettsia bellii RML369-C]
 gi|157826917|ref|YP_001495981.1| trans-regulatory protein ExsB [Rickettsia bellii OSU 85-389]
 gi|110816256|sp|Q1RJ87|QUEC_RICBR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|167016448|sp|A8GVR7|QUEC_RICB8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|91068855|gb|ABE04577.1| Trans-regulatory protein ExsB [Rickettsia bellii RML369-C]
 gi|157802221|gb|ABV78944.1| Trans-regulatory protein ExsB [Rickettsia bellii OSU 85-389]
          Length = 225

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + V+ +SGG DS+ V A+++  GY++  +
Sbjct: 2  KKAVILVSGGADSATVLAIMREQGYEIHAI 31


>gi|240102429|ref|YP_002958738.1| PP-loop ATPase, MJ1638-related [Thermococcus gammatolerans EJ3]
 gi|239909983|gb|ACS32874.1| PP-loop ATPase, MJ1638-related [Thermococcus gammatolerans EJ3]
          Length = 245

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          D +K P  +RV +A S G DS+    +L+  G++V+ +T +L
Sbjct: 48 DFEKTPTGVRVALAFSAGSDSTATLKILRWAGFEVVPITAKL 89


>gi|159905703|ref|YP_001549365.1| PP-loop domain-containing protein [Methanococcus maripaludis C6]
 gi|159887196|gb|ABX02133.1| PP-loop domain protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           PKD +++V +SGG DS  +  LL+  R  Y V     ++Y         G     Q   +
Sbjct: 74  PKD-KILVGLSGGKDSLALLHLLEPYRRKYGV-----KIYAVTVDLNINGIRPWVQSNKN 127

Query: 76  ARRV---CDTINVSHYVF----DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             ++   C  +N+ H +     +  E      +    S    G    PC  C+  V+   
Sbjct: 128 VEKISEHCKNLNIPHEIIANDGNVVE------MSKILSENTKGIEYSPCFSCSM-VRRHV 180

Query: 129 LLSVTRQLGAD----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           L +  +          +A GH +            +  + + ++  ++
Sbjct: 181 LTNYAKNNFETDSNVKIAIGHTLEDNSDTIMANIFKGNVIKALEPIKN 228


>gi|113461045|ref|YP_719112.1| thiamine biosynthesis protein ThiI [Haemophilus somnus 129PT]
 gi|122945282|sp|Q0I3G4|THII_HAES1 RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|112823088|gb|ABI25177.1| [ThiS-adenylate] sulfurtransferase [Haemophilus somnus 129PT]
          Length = 484

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 38/201 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGATHEIGVKQMAYHIW--KRFSGS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++ G   + 
Sbjct: 235 HKVRFVAINF-----EQVVAEILEKVDNGQMGVVL----KRMMVRAASKVAQRFGIQAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKESVR 201
           TG                      +     Q+        +    L   PL    KE + 
Sbjct: 286 TGE--------------------ALGQVSSQTLTNLRLIDEAAESLVLRPLITHDKEQII 325

Query: 202 DLAREMGLDIADKSDSQ-DIC 221
             A+E+G    D + S  + C
Sbjct: 326 AKAKEIG--TEDIAKSMPEFC 344


>gi|145225479|ref|YP_001136157.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium gilvum PYR-GCK]
 gi|315445832|ref|YP_004078711.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. Spyr1]
 gi|145217965|gb|ABP47369.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium gilvum PYR-GCK]
 gi|315264135|gb|ADU00877.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. Spyr1]
          Length = 522

 Score = 43.6 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 217 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 249


>gi|302545965|ref|ZP_07298307.1| glutamine-dependent NAD(+) synthetase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463583|gb|EFL26676.1| glutamine-dependent NAD(+) synthetase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 589

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV +                +   + DA  + 
Sbjct: 333 VLIGLSGGIDSALVAAIACDAVGAQNVYGVAM-----------PSRYSSEHSIGDATELA 381

Query: 81  DTINVSHYVFDYEERF 96
               ++         F
Sbjct: 382 RRTGLNFRTVPIAPMF 397


>gi|304312905|ref|YP_003812503.1| ExsB protein [gamma proteobacterium HdN1]
 gi|301798638|emb|CBL46870.1| ExsB protein [gamma proteobacterium HdN1]
          Length = 233

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          +V +SGG+DS+   AL ++ G+DV  +          S   G      ++  +RRV   +
Sbjct: 8  IVLLSGGLDSATCLALARQQGFDVYAL----------SFSYGQ-RHSVELEASRRVAHAL 56

Query: 84 N 84
           
Sbjct: 57 G 57


>gi|229010736|ref|ZP_04167933.1| hypothetical protein bmyco0001_11910 [Bacillus mycoides DSM 2048]
 gi|228750410|gb|EEM00239.1| hypothetical protein bmyco0001_11910 [Bacillus mycoides DSM 2048]
          Length = 223

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +  K+  VVV  SGG DS+       +   +V  VT   YN R   K +  C      
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIQQFEEVEAVTF-NYNQR--HKLEIDC------ 50

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A  +   + + H + D  
Sbjct: 51 --AVEIAKELGIKHTILDMS 68


>gi|110597546|ref|ZP_01385832.1| argininosuccinate synthase [Chlorobium ferrooxidans DSM 13031]
 gi|110340865|gb|EAT59339.1| argininosuccinate synthase [Chlorobium ferrooxidans DSM 13031]
          Length = 400

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 58/202 (28%), Gaps = 39/202 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ +A SGG+D+SV+   LK   YD  ++ VT  L  +++    +    +          
Sbjct: 5   KIAIAYSGGLDTSVMIKWLKDK-YDAEIVAVTGNLGQTKEIEGLESKALSTGASK----- 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                      D  + F    I     + A  E   P      R +    L+        
Sbjct: 59  -------FQFVDLRKEFVEEYIWRALKAGALYEDVYPLATALGRPLLAKALVDAALAEDC 111

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
            +LA G                    +  D  R +  F           +  PL   +  
Sbjct: 112 TMLAHG-----------------CTGKGNDQVRFEVTFASLAPHL---KVLAPLREWEFT 151

Query: 197 KESV-RDLAREMGLDIADKSDS 217
                   A E  + ++    S
Sbjct: 152 SREAEIAYALEHNIPVSATKKS 173


>gi|108798144|ref|YP_638341.1| GMP synthase [Mycobacterium sp. MCS]
 gi|119867240|ref|YP_937192.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium sp. KMS]
 gi|126433803|ref|YP_001069494.1| GMP synthase [Mycobacterium sp. JLS]
 gi|108768563|gb|ABG07285.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. MCS]
 gi|119693329|gb|ABL90402.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. KMS]
 gi|126233603|gb|ABN97003.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. JLS]
          Length = 519

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 217 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 249


>gi|26987961|ref|NP_743386.1| exsB protein [Pseudomonas putida KT2440]
 gi|75489508|sp|Q9WWW8|QUEC_PSEPU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81441873|sp|Q88NI3|QUEC_PSEPK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|24982674|gb|AAN66850.1|AE016313_9 exsB protein [Pseudomonas putida KT2440]
 gi|5514781|emb|CAB50783.1| hypothetical protein [Pseudomonas putida]
 gi|313497578|gb|ADR58944.1| ExsB [Pseudomonas putida BIRD-1]
          Length = 224

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ K +GY     T+        S   G     + +  A RV
Sbjct: 3  EKRAVILLSGGLDSATVVAMAKAEGYSC--YTM--------SFDYGQRHRAE-LNAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARDLGVVEHKVI 63


>gi|327398487|ref|YP_004339356.1| PP-loop domain-containing protein [Hippea maritima DSM 10411]
 gi|327181116|gb|AEA33297.1| PP-loop domain protein [Hippea maritima DSM 10411]
          Length = 294

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+ ++++A+SGG DS +     L   GY+   + + L     +   +    A  D +DA 
Sbjct: 46  KEDKILIAVSGGKDS-MSLWSALLELGYNTTALFVDLGIGGFSELARSKVEAFSDRFDA- 103

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                      V + ++       +P        + P  C  C R +K     +   + G
Sbjct: 104 --------PLRVVELKKE-----GIPIPEVVKKIKRPA-CAVCGR-IKRYYFNTEGLKGG 148

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            DVLATGH +       DD   R     +   M+   DQS  L   +++ L     P   
Sbjct: 149 FDVLATGHNL-------DDETSRLFSNVLHWKMEYLEDQSPVLP--SEEGLLKKVKPFFR 199

Query: 195 MKKESVRDLA--REMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           + +  +   A  + +    +    S+   F    ++ + ++  + 
Sbjct: 200 LTEFEIAAYAFFKNIDYLTSGCPFSKGATFSTYKRHLNRIEYDSP 244


>gi|312140823|ref|YP_004008159.1| gmp synthase [Rhodococcus equi 103S]
 gi|325675540|ref|ZP_08155224.1| GMP synthase [Rhodococcus equi ATCC 33707]
 gi|311890162|emb|CBH49480.1| GMP synthase [Rhodococcus equi 103S]
 gi|325553511|gb|EGD23189.1| GMP synthase [Rhodococcus equi ATCC 33707]
          Length = 525

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D + +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 220 DGKAICGLSGGVDSAVAAALVQRAIGDRLTCVF 252


>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040676|gb|ACT57472.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 562

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 59/206 (28%), Gaps = 37/206 (17%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
             A  L+  D  +     +V++ +SGG+DS++ AA+              L      +  
Sbjct: 276 YNACVLSLRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDA----------LGKENVQTIM 325

Query: 64  KGS-CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
                 + Q + DA      +   + V    +      +  F                  
Sbjct: 326 LPYKYTSPQSLEDAAACAKALGCKYDVLPIHDL-----VNHF------------------ 362

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182
              FS +    ++  + ++A     R R  +                 + +    + T  
Sbjct: 363 ---FSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLY 419

Query: 183 QQLCDLRFPLGDMKKESVRDLAREMG 208
             +     PL D+ K  V  LA    
Sbjct: 420 GDMSGGFNPLKDLYKTQVFQLASWRN 445


>gi|118443903|ref|YP_878644.1| argininosuccinate synthase [Clostridium novyi NT]
 gi|166219963|sp|A0Q1Z2|ASSY_CLONN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118134359|gb|ABK61403.1| argininosuccinate synthase [Clostridium novyi NT]
          Length = 402

 Score = 43.6 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+S+    LK + Y  DVI   + +       + K               
Sbjct: 4   KVVLAYSGGLDTSITIHWLKEN-YNLDVIACCVNVGQDEDFDEIKKKAIKSGA------- 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCN--------RTVKFSDLL 130
                         + +   V   F S Y   G       +          R +    L+
Sbjct: 56  -------------TKIYVEDVKDEFVSEYIYKGVKANAVYEGKYLLGTSFARPLIAKKLV 102

Query: 131 SVTRQLGADVLATG 144
            V  + GA  +  G
Sbjct: 103 EVAHKEGAKYICHG 116


>gi|289596785|ref|YP_003483481.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Aciduliprofundum boonei T469]
 gi|289534572|gb|ADD08919.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Aciduliprofundum boonei T469]
          Length = 376

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 52/225 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++ +S G+DS V A L+ + G  +I + ++  +S               V   +++ +
Sbjct: 184 KLIMLISSGIDSPVAAYLMMKRGAKIIALHMKHSDSG--------------VEKVKKILE 229

Query: 82  TI------NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTR 134
            +       +   V ++ E     +       +    T   CV C    +K +D   +  
Sbjct: 230 VLEQYSPRKIELVVKNHYEELSK-ISDKLREMHRERWT---CVFCKYTMLKIAD--RIAN 283

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           + GA  + TG  +        +                  Y     T   +     PL  
Sbjct: 284 KYGALGIVTGDSLGQVASQTLENM----------------YIESQATSYPIYR---PLIG 324

Query: 195 MKKESVRDLAREMGLDIADKSDSQDICF------VQQGKYFDVVK 233
           M K  +  +A+ +G         ++ C       V QG Y +  K
Sbjct: 325 MDKNEIEGIAKNIGTYNVFLEGGEEKCPFKAKYVVVQGNYEEFEK 369


>gi|282854547|ref|ZP_06263883.1| NAD+ synthetase [Propionibacterium acnes J139]
 gi|282582408|gb|EFB87789.1| NAD+ synthetase [Propionibacterium acnes J139]
 gi|314922030|gb|EFS85861.1| NAD+ synthetase [Propionibacterium acnes HL001PA1]
 gi|314965986|gb|EFT10085.1| NAD+ synthetase [Propionibacterium acnes HL082PA2]
 gi|314980691|gb|EFT24785.1| NAD+ synthetase [Propionibacterium acnes HL110PA3]
 gi|315090990|gb|EFT62966.1| NAD+ synthetase [Propionibacterium acnes HL110PA4]
 gi|315095215|gb|EFT67191.1| NAD+ synthetase [Propionibacterium acnes HL060PA1]
 gi|315105332|gb|EFT77308.1| NAD+ synthetase [Propionibacterium acnes HL050PA2]
 gi|327328842|gb|EGE70602.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL103PA1]
          Length = 689

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 21/91 (23%)

Query: 13  DLDKNPKDMR---VVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASK 62
            L +  + MR   +V+ +SGG+DS+    V A  + + G    D++  T+          
Sbjct: 359 GLRRRLESMRSPQIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM---------- 408

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYE 93
             G         +A  +C  + +   V D  
Sbjct: 409 -PGFATTDHTKNNALDLCRALGIPCEVLDIR 438


>gi|212712490|ref|ZP_03320618.1| hypothetical protein PROVALCAL_03585 [Providencia alcalifaciens DSM
           30120]
 gi|212684706|gb|EEB44234.1| hypothetical protein PROVALCAL_03585 [Providencia alcalifaciens DSM
           30120]
          Length = 406

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDARRV 79
            ++V+A SGG+D+S +   LK             Y+  +            +D+    + 
Sbjct: 6   KKIVLAYSGGLDTSAIIPWLKE-----------NYDDCEVVAFVADVGQDREDLVGVEKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    YV D  E F    I P          SY  G +    +     V       
Sbjct: 55  ALQSGASECYVVDLREEFIKEYIYPVLKTGALYEGSYLLGTSMARPIIAKAQV------E 108

Query: 132 VTRQLGADVLATG 144
           +  ++GAD +A G
Sbjct: 109 IALKVGADAVAHG 121


>gi|119717853|ref|YP_924818.1| GMP synthase [Nocardioides sp. JS614]
 gi|119538514|gb|ABL83131.1| GMP synthase (glutamine-hydrolyzing) [Nocardioides sp. JS614]
          Length = 527

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 41/200 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +  +SGGVDS+V AA+++R  G  +  V            R+G     +     R     
Sbjct: 224 ICGLSGGVDSAVAAAIVQRAIGDRLTCVY-----VDHGLMRQGETEQVE-----RDFVAA 273

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTR----- 134
             V   V D E++F +A          AG T     +  R +   +              
Sbjct: 274 TGVDLKVVDAEKQFLDA---------LAGVT---DPEEKRKIIGREFIRVFEAAEADILG 321

Query: 135 ----QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                 G   +A          V + G             +   + +         +L  
Sbjct: 322 GSLPDDGGSKVAFLVQGTLYPDVVESGGG-----AGTSNIKSH-HNVGGLPDDLEFELVE 375

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K+ VR +  ++GL 
Sbjct: 376 PLRTLFKDEVRLVGEQLGLP 395


>gi|238795120|ref|ZP_04638711.1| NAD+ synthase [Yersinia intermedia ATCC 29909]
 gi|238725568|gb|EEQ17131.1| NAD+ synthase [Yersinia intermedia ATCC 29909]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|313836422|gb|EFS74136.1| NAD+ synthetase [Propionibacterium acnes HL037PA2]
 gi|314929035|gb|EFS92866.1| NAD+ synthetase [Propionibacterium acnes HL044PA1]
 gi|314971017|gb|EFT15115.1| NAD+ synthetase [Propionibacterium acnes HL037PA3]
 gi|328906681|gb|EGG26456.1| NAD synthetase [Propionibacterium sp. P08]
          Length = 689

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 22  RVVVAMSGGVDSS----VVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           R+V+ +SGG+DS+    V A  + + G    D++  T+            G         
Sbjct: 371 RIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTM-----------PGFATTNHTKN 419

Query: 75  DARRVCDTINVSHYVFDYE 93
           +A  +C  + +   V D  
Sbjct: 420 NALDLCHALGIPCEVLDIR 438


>gi|50546979|ref|XP_500959.1| YALI0B16104p [Yarrowia lipolytica]
 gi|74635374|sp|Q6CEF3|GUAA_YARLI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49646825|emb|CAG83212.1| YALI0B16104p [Yarrowia lipolytica]
          Length = 527

 Score = 43.6 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 23/191 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A L+K      IG             R   C   +     + + + 
Sbjct: 226 VIGAVSGGVDSTVGAKLMKEA----IGDRFHAILVDNGVMRLNECENVK-----KTLGEG 276

Query: 83  INVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           + ++  V D  + F      V  P       G T +   +              +     
Sbjct: 277 LGINLNVVDAADLFLGKLKGVTDPEKKRKIIGNTFIEVFEE----------EAAKIQPTH 326

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
             A       +  +  D         P    +            +L  L  PL ++ K+ 
Sbjct: 327 PEAGEIEFLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLDNMKL-KLIEPLRELFKDE 385

Query: 200 VRDLAREMGLD 210
           VR L   MG+ 
Sbjct: 386 VRKLGEIMGIP 396


>gi|319950723|ref|ZP_08024619.1| GMP synthase [Dietzia cinnamea P4]
 gi|319435601|gb|EFV90825.1| GMP synthase [Dietzia cinnamea P4]
          Length = 519

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 214 DGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 246


>gi|254420612|ref|ZP_05034336.1| argininosuccinate synthase [Brevundimonas sp. BAL3]
 gi|196186789|gb|EDX81765.1| argininosuccinate synthase [Brevundimonas sp. BAL3]
          Length = 412

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+     +V+  T                  G+++  AR  
Sbjct: 10  KKVVLAYSGGLDTSIILKWLQTEYNAEVVTFT-------------ADLGQGEELGPAREK 56

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
              + +     ++ D  E F    + P           Y  G +    +   R +     
Sbjct: 57  ALKLGIKPENIFIDDLREEFVRDFVFPMFRANAQYEGDYLLGTSIARPLISKRQI----- 111

Query: 130 LSVTRQLGADVLATG 144
             + RQ+GAD +  G
Sbjct: 112 -EIARQVGADAVCHG 125


>gi|21673016|ref|NP_661081.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlorobium tepidum TLS]
 gi|44887968|sp|Q8KFZ5|GUAA_CHLTE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21646081|gb|AAM71423.1| GMP synthase [Chlorobium tepidum TLS]
          Length = 516

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 40/204 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           ++ +   D  VV  +SGGVDS+V A L+ +     IG  L          RK        
Sbjct: 216 EIKRVAGDSTVVCGISGGVDSTVAAVLVSKA----IGDKLHCVFVDNGLLRKDE------ 265

Query: 73  VYDARRVCDT---INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKF 126
              A +V +    + ++  + D  + F      V  P       G T +   + N     
Sbjct: 266 ---AVKVMEFLKPLGLNISLVDASDLFLGRLKGVASPEKKRKIIGRTFIQVFEKNIH--- 319

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                   +           I S    G     +                +    ++   
Sbjct: 320 ------DEKFLVQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKL 361

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            L  PL ++ K+ VR + RE+G+ 
Sbjct: 362 KLIEPLRELFKDEVRAVGRELGIA 385


>gi|323705585|ref|ZP_08117159.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535062|gb|EGB24839.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 460

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 20/129 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  ++VV +SGG DS  +  LL    + Y      L+L+        +G+  A  D    
Sbjct: 17  KGDKIVVGVSGGPDSICLLNLLLEIKERYK-----LKLFVVHVNHMLRGA-DADSDALFV 70

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            + C  IN+  +       F+  V         A E  L      R +++S    V +++
Sbjct: 71  EKFCKGINIPFF------LFKEDVRRY------AEENGLSEEAAGREIRYSAFNKVLKEV 118

Query: 137 GADVLATGH 145
           G + +A  H
Sbjct: 119 GGNKIAIAH 127


>gi|300779755|ref|ZP_07089611.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium genitalium
           ATCC 33030]
 gi|300533865|gb|EFK54924.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium genitalium
           ATCC 33030]
          Length = 535

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 29/197 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   +  +SGGVDS+V AAL++R  G  +  V     +     K +              
Sbjct: 230 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRKGEREQVETDF------ 280

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D  E F             AG T     +  R    ++ +    +  A
Sbjct: 281 VAAT-GARLVTVDEREAFLCK---------LAGVT---DPEEKRKAIGAEFIRSFERAVA 327

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMC-----RPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           DV++     +  +     G     +            +   + +         +L  PL 
Sbjct: 328 DVVSHSASGQQDVGFLVQGTLYPDVVESGGGTGTANIKSH-HNVGGLPDDVEFELVEPLR 386

Query: 194 DMKKESVRDLAREMGLD 210
            + K+ VR + RE+GL 
Sbjct: 387 TLFKDEVRAVGRELGLP 403


>gi|229513885|ref|ZP_04403347.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21]
 gi|229349066|gb|EEO14023.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSRVLLALLARGRDEFGWDVAAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|159899995|ref|YP_001546242.1| GMP synthase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893034|gb|ABX06114.1| GMP synthase, large subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 514

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 23  VVVAMSGGVDSSVVAALLKRD 43
           V+ A+SGGVDS+V A L  + 
Sbjct: 219 VICALSGGVDSAVAALLAHQA 239


>gi|2765079|emb|CAA71524.1| GMP synthase [Corynebacterium ammoniagenes]
          Length = 522

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 220 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 252


>gi|121998294|ref|YP_001003081.1| asparagine synthase [Halorhodospira halophila SL1]
 gi|121589699|gb|ABM62279.1| asparagine synthase (glutamine-hydrolyzing) [Halorhodospira
           halophila SL1]
          Length = 637

 Score = 43.6 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCDTINV 85
           +SGGVDSSVV AL+             L +    A           +   A +V   + +
Sbjct: 269 LSGGVDSSVVVALMSE-----------LSDRPVDACSIAFRDPHYDEAEHAGKVAGHLGL 317

Query: 86  SHYV--FDYEERF 96
           +H++   D  ERF
Sbjct: 318 NHHIHKVD-SERF 329


>gi|303244156|ref|ZP_07330494.1| tRNA methyl transferase-like protein [Methanothermococcus
          okinawensis IH1]
 gi|302485541|gb|EFL48467.1| tRNA methyl transferase-like protein [Methanothermococcus
          okinawensis IH1]
          Length = 198

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          +V V  SGG DSS+ A LLK+ GY+   +T+                       A+    
Sbjct: 3  KVHVLFSGGKDSSLSAILLKKLGYEPELITVNF-------------GILDSYRYAQETAK 49

Query: 82 TINVSHYV 89
           + + H V
Sbjct: 50 ILALPHNV 57


>gi|222444603|ref|ZP_03607118.1| hypothetical protein METSMIALI_00215 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434168|gb|EEE41333.1| hypothetical protein METSMIALI_00215 [Methanobrevibacter smithii
           DSM 2375]
          Length = 475

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGGVDSS++A LL+          + L  + K +         +DV  A+ V + 
Sbjct: 235 VGVIFSGGVDSSLIALLLRE---------ISLNKNLKVTLYAVGKKDSKDVVAAKCVAEY 285

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           + +   V D  E    +++                +  N  +K  
Sbjct: 286 LGLPLKVHDITE----SIVKDSLKDVVQA------IGENNLMKIG 320


>gi|148642220|ref|YP_001272733.1| asparagine synthetase, AsnB [Methanobrevibacter smithii ATCC 35061]
 gi|148551237|gb|ABQ86365.1| asparagine synthetase, AsnB [Methanobrevibacter smithii ATCC 35061]
          Length = 475

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGGVDSS++A LL+          + L  + K +         +DV  A+ V + 
Sbjct: 235 VGVIFSGGVDSSLIALLLRE---------ISLNKNLKVTLYAVGKKDSKDVVAAKCVAEY 285

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
           + +   V D  E    +++                +  N  +K  
Sbjct: 286 LGLPLKVHDITE----SIVKDSLKDVVQA------IGENNLMKIG 320


>gi|83949870|ref|ZP_00958603.1| NAD(+) synthase [Roseovarius nubinhibens ISM]
 gi|83837769|gb|EAP77065.1| NAD(+) synthase [Roseovarius nubinhibens ISM]
          Length = 552

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++ +SGG+DS++VA +      D IG      ++ +         +   + DA+ + 
Sbjct: 285 KKVLLGLSGGIDSAIVATIAA----DAIGA-----DNVRCVMLPSEYTSQASLDDAKALA 335

Query: 81  DTINVSHYVFDYEE 94
           + +  S+      +
Sbjct: 336 ENLGCSYDFVPISQ 349


>gi|326332153|ref|ZP_08198435.1| tRNA methyl transferase [Nocardioidaceae bacterium Broad-1]
 gi|325950051|gb|EGD42109.1| tRNA methyl transferase [Nocardioidaceae bacterium Broad-1]
          Length = 261

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 58/195 (29%), Gaps = 42/195 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVCDT 82
           +VA SGG DS   A LL          T  L ++  A+    S        D A     +
Sbjct: 2   LVAFSGGADS---AFLLA-------AATRALGSADVAAATGYSHSLPVSERDPAAEFARS 51

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V        E  R          Y A  T   C  C   +    L  + R+LG   +A
Sbjct: 52  LGVRLITPQTHEMERE--------GYRANGTD-RCFFCKAEL-LDTLTPLARELGLAHVA 101

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
           TG          DD        RP                        PL D  + K  +
Sbjct: 102 TGTNA-------DDAIEGLNGLRP------------GIRAAAERGAITPLKDAGLTKAQI 142

Query: 201 RDLAREMGLDIADKS 215
           R+ +R   L   DK 
Sbjct: 143 REASRRWDLPTWDKP 157


>gi|253582348|ref|ZP_04859571.1| PP family ATPase [Fusobacterium varium ATCC 27725]
 gi|251835887|gb|EES64425.1| PP family ATPase [Fusobacterium varium ATCC 27725]
          Length = 267

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 31/141 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      R+ V +SGG DS ++  L +         ++V  +++              
Sbjct: 29  DFNLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRSKNFEVAFISM------------NP 76

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVK 125
                D+   +   + + +   V      F   V             P  PC  C   ++
Sbjct: 77  GFEALDMEKFKTNLEELGIPCEV------FEANVWEIAFKE-----DPESPCFLC-AKMR 124

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   +LG + LA GH+
Sbjct: 125 RGVLYNRVEELGYNKLALGHH 145


>gi|116250590|ref|YP_766428.1| lipopolysaccharide synthesis protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255238|emb|CAK06313.1| putative lipopolysaccharide synthesis protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 386

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 45/249 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V +SGG+DS+ +A L  R  G  ++ V              G   +   V++   +   
Sbjct: 71  MVGLSGGIDSAFLAHLAARKHGLRLLAVH-----------VDGGWNSEPAVHNIEILVRK 119

Query: 83  INVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-DV 140
           +++  + +  E +  R+  I    +S    + P           FS L     + G    
Sbjct: 120 LDLDLHTYVIEWQEMRDLQIAFMKASVLNQDIPQ------DHAFFSTLYRTAAKFGIRHF 173

Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSY-FLFATTQQQLCDLR---- 189
           L+  ++    +      Y   DG     + +     +  +Y F+       L  +R    
Sbjct: 174 LSGVNFASESVIPRGFGYPSIDGTHASAIQKRFGSLKLTTYPFMSPLEYIWLTRVRRQLT 233

Query: 190 --FPLG--DMKKESVR-DLAREMGLDIADKSDS--------QDICFVQQGKYFDVVKRIN 236
              PL   D  KE  R +L RE G        S        QDI ++ +   FD  +   
Sbjct: 234 IHRPLNYIDYNKEEARTELQREYGWRDYGGKHSESRFTKFYQDI-YLPRKFNFDKRRLHL 292

Query: 237 AGIALEGDI 245
           + + + G +
Sbjct: 293 SSLIVAGQM 301


>gi|332170896|gb|AEE20151.1| argininosuccinate synthase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 393

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++++A SGG+D+S          GY+V  V                    Q++ + +  
Sbjct: 2   KKLILAYSGGLDTSYCVKYFTAEMGYEVHAV-----------SVNTGGFTDQEIANNKEK 50

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +  S Y   D    F + V+              P  V   R V+  ++ +  +   
Sbjct: 51  ALALGASSYTNIDAVATFYDTVVKYLIFGNVLKNNSYPLSVSAERIVQAIEIANFAKAQN 110

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 111 ADAIAHG 117


>gi|326330125|ref|ZP_08196436.1| ExsB protein [Nocardioidaceae bacterium Broad-1]
 gi|325951938|gb|EGD43967.1| ExsB protein [Nocardioidaceae bacterium Broad-1]
          Length = 232

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
           + VV +SGG+DS+ V A+ K  GY+   ++ +
Sbjct: 3  KKAVVLLSGGLDSTTVLAIAKDQGYEPYALSFR 35


>gi|297621469|ref|YP_003709606.1| Queuosine biosynthesis protein QueC [Waddlia chondrophila WSU
           86-1044]
 gi|297376770|gb|ADI38600.1| Queuosine biosynthesis protein QueC [Waddlia chondrophila WSU
           86-1044]
          Length = 212

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 35/217 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +V +SGG+DS+VV A+ +  G +   +          S   G      ++  A  + 
Sbjct: 1   MKAIVLLSGGIDSTVVLAMAQSLGRECTAL----------SFDYGQ-RHKVELEHAAHIA 49

Query: 81  DTINVSHYVFDYE-ERFRN-------AV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
               V   + +     F N        V         + G  P   V    T+     L+
Sbjct: 50  HYYKVPQIIINISPACFENTALVNALNVPKNRTLDEISKGGIPSTYVPARNTL----FLA 105

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDL 188
                G   +     I     + D  +     CRP      Q     AT Q        +
Sbjct: 106 YAA--GQAEIMNAEEIHCGPNLLD--RNCYPDCRPEFYSAFQQVLASATKQGAEGNPPRI 161

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
             PL +  K  +    R++G  +    D+   C+   
Sbjct: 162 VTPLINWDKNRIVQEGRKLGAPL----DTTFSCYSPS 194


>gi|294496221|ref|YP_003542714.1| exsB protein [Methanohalophilus mahii DSM 5219]
 gi|292667220|gb|ADE37069.1| exsB protein [Methanohalophilus mahii DSM 5219]
          Length = 228

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          M+ V  +S G+DS    A+     YDV IG+T             G   A  ++  +R++
Sbjct: 3  MKAVCLLSSGLDSLASLAI-ASAKYDVQIGLTF----------DYGQLAADAEIDHSRQI 51

Query: 80 CDTINVSHYVFDY 92
          C    + H V   
Sbjct: 52 CAHYGIPHRVISL 64


>gi|256390704|ref|YP_003112268.1| GMP synthase [Catenulispora acidiphila DSM 44928]
 gi|256356930|gb|ACU70427.1| GMP synthase, large subunit [Catenulispora acidiphila DSM 44928]
          Length = 523

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R +  +SGGVDS+V AA++++  G  +  V            RKG     +   D   V
Sbjct: 219 KRAICGLSGGVDSAVAAAIVQKAVGEQLTCVF-----VDHGLLRKGEAEQVE--KD--FV 269

Query: 80  CDTINVSHYVFDYEERF 96
             T  V   V D E+RF
Sbjct: 270 AAT-GVQLKVVDAEQRF 285


>gi|20094501|ref|NP_614348.1| PP-loop superfamily ATPase [Methanopyrus kandleri AV19]
 gi|74559880|sp|Q8TWG9|QUEC_METKA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|19887606|gb|AAM02278.1| Predicted PP-loop superfamily ATPase [Methanopyrus kandleri AV19]
          Length = 229

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 58/201 (28%), Gaps = 36/201 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV  SGG+DSSV+A     + G  VI +              G   A  +   A R+ + 
Sbjct: 5   VVLCSGGLDSSVIAKWAVEELGGRVICLF----------VDYGQRNAPFERRAAERIAEA 54

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETP----LPCVDCNRTVKFSDLLSVTRQLGA 138
           +            F    + P    + AG  P       +  N            R    
Sbjct: 55  VGAEFETV---GTFWLRRLCPDNPMF-AGRLPREAGTEDLSANWLP--------ARNWNL 102

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER--DQSYFLFATTQQQLC-------DLR 189
             +A        L   DD           + ER  D +        + L         L 
Sbjct: 103 LGVAAALCDHLYLEGEDDEFHIVWGINAEEAERFPDNTKEFADAVAEALKRGLPSRPRLH 162

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL ++ K  +  L  E+G  
Sbjct: 163 SPLAELYKPGIVRLGSELGAP 183


>gi|238796754|ref|ZP_04640260.1| NAD+ synthase [Yersinia mollaretii ATCC 43969]
 gi|238719485|gb|EEQ11295.1| NAD+ synthase [Yersinia mollaretii ATCC 43969]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|238784206|ref|ZP_04628219.1| NAD+ synthase [Yersinia bercovieri ATCC 43970]
 gi|238714915|gb|EEQ06914.1| NAD+ synthase [Yersinia bercovieri ATCC 43970]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|254225768|ref|ZP_04919373.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51]
 gi|125621674|gb|EAZ50003.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSRVLLALLARGRDEFGWDVAAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|186684589|ref|YP_001867785.1| exsB protein [Nostoc punctiforme PCC 73102]
 gi|254764363|sp|B2IUR7|QUEC_NOSP7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|186467041|gb|ACC82842.1| exsB protein [Nostoc punctiforme PCC 73102]
          Length = 224

 Score = 43.6 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 34/204 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS +    K DG +   +                    Q++  A  V 
Sbjct: 1   MKAVILLSGGLDSSTILYKAKADGCECHAI-----------SFDYQQRHRQELQSALTVA 49

Query: 81  DTINV-SHYVFDYEERFR------NAVIV----PFASSYAAGETPLPCVDCNRTVKFSDL 129
               +  H V +++ R        +  I            +   P+  V    T+  S  
Sbjct: 50  KKAAIAKHQVVNFDLRQWGGSALTDDAIDLPQQRSLDE-MSQNIPVTYVPARNTIFLSFA 108

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ---QQLC 186
           L     + A+ +  G          D        CRP  +E  Q  F   T Q    Q  
Sbjct: 109 LGYAEAIAAERVYIGVNALDYSGYPD--------CRPDYIEAMQEVFRLGTKQGREGQPI 160

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
            +  PL ++KK  +  L  E+G+ 
Sbjct: 161 KIVAPLINLKKTEIIQLGNELGVP 184


>gi|260494156|ref|ZP_05814287.1| NAD+ synthetase [Fusobacterium sp. 3_1_33]
 gi|260198302|gb|EEW95818.1| NAD+ synthetase [Fusobacterium sp. 3_1_33]
          Length = 224

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 52/201 (25%)

Query: 27  MSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           MSGG+DS++VA LL+   G + V+ + +                    +  A+ V + + 
Sbjct: 1   MSGGIDSALVAYLLRDALGKENVLAIMM-----------PYKSSNPDSLNHAKLVIEDLK 49

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV---KFSDLLSVTRQLGADVL 141
           ++    +         I     +Y   E     +     +   + S L   + +      
Sbjct: 50  INSKTIE---------ITDMIDAYFKNEKEATSLRMGNKMARERMSILFDYSSK------ 94

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
                  + L VG                + + Y  ++T          P+GD+ K ++ 
Sbjct: 95  ------ENTLVVGT-------------SNKTEIYLGYSTQFGDSACALNPIGDLYKTNIW 135

Query: 202 DLAREMGLDIA--DKSDSQDI 220
           DL+R + +     +K  S D+
Sbjct: 136 DLSRYLKIPNELIEKKPSADL 156


>gi|58616998|ref|YP_196197.1| putative glutamine-dependent NAD(+) synthetase [Ehrlichia
           ruminantium str. Gardel]
 gi|58416610|emb|CAI27723.1| Probable glutamine-dependent NAD(+) synthetase [Ehrlichia
           ruminantium str. Gardel]
          Length = 513

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
            +A  L   D  +     +V++ +SGG+DS++VA +         G+      S     +
Sbjct: 244 YQALMLALKDYVQKNSMTKVILGLSGGIDSALVATIAAD------GLGPANVLSFMLPTK 297

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             S      + DA+     + +S+ +   E  F+
Sbjct: 298 YTS---ETSMIDAQECAARLGISYNILSIETIFQ 328


>gi|327484760|gb|AEA79167.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae LMA3894-4]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KILLALSGGVDSRVLLALLARGRDEFGWDVAAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|317052068|ref|YP_004113184.1| argininosuccinate synthase [Desulfurispirillum indicum S5]
 gi|316947152|gb|ADU66628.1| argininosuccinate synthase [Desulfurispirillum indicum S5]
          Length = 407

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 26/139 (18%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           + K     +VV+A SGG+D+SV+   L+K    +VI  T  L    +    K        
Sbjct: 1   MSKKTSVNKVVLAYSGGLDTSVILKWLIKEYDCEVIAFTADLGQEEELDSVKPKALKTG- 59

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVK 125
              A +V        Y+ D  + F    I P   S       Y  G          R + 
Sbjct: 60  ---ASKV--------YIEDLRDEFARDFIYPMMRSSCVYEGRYLLG------TSIARPLI 102

Query: 126 FSDLLSVTRQLGADVLATG 144
              ++ +  +  AD ++ G
Sbjct: 103 TKGMMDIVARESADAISHG 121


>gi|240949560|ref|ZP_04753899.1| thiamine biosynthesis protein ThiI [Actinobacillus minor NM305]
 gi|240296001|gb|EER46667.1| thiamine biosynthesis protein ThiI [Actinobacillus minor NM305]
          Length = 483

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSSSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKASD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  I+   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIIEEEGHF 367


>gi|237753368|ref|ZP_04583848.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375635|gb|EEO25726.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 259

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 22/133 (16%)

Query: 18  PKDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  +V++ +SGG DS   + + A LKR  Y         +  +  +   G     + ++
Sbjct: 28  KEGDKVLLGLSGGKDSILLATLLARLKR--YAPF-----NFEFKALTVDYGRGGEYEYIF 80

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +    C+   + +      E +R  +            +   C  C+R ++   L +   
Sbjct: 81  EY---CEKHGIPY------ELYRTDIYK-ILEENKREGSVY-CSFCSR-MRRGALYTKAL 128

Query: 135 QLGADVLATGHYI 147
           + G + LA  H++
Sbjct: 129 EGGYNKLALAHHL 141


>gi|19115224|ref|NP_594312.1| GMP synthase [glutamine-hydrolyzing] (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74625347|sp|Q9P772|GUAA_SCHPO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7630124|emb|CAB88269.1| GMP synthase [glutamine-hydrolyzing] (predicted)
           [Schizosaccharomyces pombe]
          Length = 539

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 61/207 (29%), Gaps = 55/207 (26%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V+ A+SGGVDS+V + +LK      IG                       + +A  V +
Sbjct: 238 HVIGAVSGGVDSTVASKVLKEA----IG---------DRFHAIMVDNGLLRLNEAEIVRE 284

Query: 82  ----TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                + +   V D  E F              G T     +  R +            G
Sbjct: 285 TLNKHLGIQLTVVDASEEFIGK---------LKGVT---DPEKKRKII-----------G 321

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIM--------------CRPMDLERDQSYFLFATTQQ 183
              +        R+    +GK   ++                P    +            
Sbjct: 322 NTFIHVFEREAERIVKETNGKVEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLKDM 381

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLD 210
           +L  L  PL ++ K+ VR L   +G++
Sbjct: 382 KL-KLIEPLRELFKDEVRALGELLGIE 407


>gi|11499256|ref|NP_070494.1| hypothetical protein AF1666 [Archaeoglobus fulgidus DSM 4304]
 gi|2648889|gb|AAB89582.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 222

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVI---GVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           M+V   +SGG DS +    +    ++VI   G+        +             + D  
Sbjct: 1   MKVAALISGGKDSILALHKVAEK-HEVISLVGIF------PENEDSYMFHSVNLHMLDV- 52

Query: 78  RVCDTINVSHYVFDYEERFRNAV 100
            V +++ +              V
Sbjct: 53  -VAESLGLPLKKLYVSGEEEKEV 74


>gi|189499746|ref|YP_001959216.1| exsB protein [Chlorobium phaeobacteroides BS1]
 gi|254764321|sp|B3ENV8|QUEC_CHLPB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189495187|gb|ACE03735.1| exsB protein [Chlorobium phaeobacteroides BS1]
          Length = 226

 Score = 43.6 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR VV +SGG+DS VVAA  +  GY++  +              G     +++   RR+C
Sbjct: 1  MRAVVLISGGMDSLVVAAQARALGYELAAMH----------VNYGQRTWQKELTAFRRIC 50

Query: 81 DTINVS 86
              + 
Sbjct: 51 SHYAIE 56


>gi|291521355|emb|CBK79648.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus catus GD/7]
          Length = 382

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 26/144 (18%)

Query: 6   ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           A  +N+ DL +     ++ V +SGG DS ++A L +          L+ +N         
Sbjct: 126 AKAINTYDLIQP--GDKIAVCISGGKDSMLMAKLFQE---------LKRHNKFPFELVFL 174

Query: 66  SCCAGQDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
               G    + + +      + V   V  +E +   AV               PC  C  
Sbjct: 175 VMDPGYSEVNRKLIENNARIMGVPITV--FESQIFEAVYD---------IQKSPCYLC-A 222

Query: 123 TVKFSDLLSVTRQLGADVLATGHY 146
            ++   L +  ++LG + +A GH+
Sbjct: 223 RMRRGHLYNKAKELGCNKIALGHH 246


>gi|291461001|ref|ZP_06026367.2| LPS biosynthesis protein WbpG [Fusobacterium periodonticum ATCC
           33693]
 gi|291379558|gb|EFE87076.1| LPS biosynthesis protein WbpG [Fusobacterium periodonticum ATCC
           33693]
          Length = 364

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVCDT 82
           ++ +SGGVDSS VA    +            +  R       +C   +    +  R+ + 
Sbjct: 58  LIGLSGGVDSSYVAYCAVKK-----------WGLRPLIFAVDTCWNLEVADKNIERIINK 106

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V  +   YE+   + ++    + + + +     +  +  + F+ L +   + G   + 
Sbjct: 107 LGVDVH---YEKINHDEMMDLQLAFFKS-QVAYQDIPQDHNI-FAALYNFAAKNGFKHIL 161

Query: 143 TG 144
           TG
Sbjct: 162 TG 163


>gi|156096807|ref|XP_001614437.1| GMP synthetase [Plasmodium vivax SaI-1]
 gi|148803311|gb|EDL44710.1| GMP synthetase, putative [Plasmodium vivax]
          Length = 547

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 36/206 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           ++ K  +D  V+ AMSGG+DS+V AA    + K   Y   G+ +     RK    K    
Sbjct: 239 NIKKYAQDHYVIAAMSGGIDSTVAAAFTHKIFKERFY---GIFIDNGLLRKNEGEKVYSF 295

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                 D         ++    D  E F N            G T     +  R +    
Sbjct: 296 LKGIFPD---------MNLTKIDASEIFLNN---------LKGVT---DPEQKRKIIGKL 334

Query: 129 L---LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                    +     +   + ++  LY   D    +   R  D  +   + +     + L
Sbjct: 335 FIEEFEKAVKNINIDIEKTYLLQGTLY--PDIIESKCSKRLSDTIKTH-HNVGGLP-ENL 390

Query: 186 CDLRF-PLGDMKKESVRDLAREMGLD 210
               F P   + K+ V+ L++E+ L 
Sbjct: 391 KFKLFEPFKYLFKDDVKKLSQELNLP 416


>gi|257463608|ref|ZP_05627999.1| queuosine biosynthesis protein QueC [Fusobacterium sp. D12]
 gi|317061162|ref|ZP_07925647.1| succinoglycan biosynthesis regulator [Fusobacterium sp. D12]
 gi|313686838|gb|EFS23673.1| succinoglycan biosynthesis regulator [Fusobacterium sp. D12]
          Length = 231

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 15/79 (18%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          M+V+V +SGG+DS+   A+     Y    V+ +          S   G     +++  AR
Sbjct: 1  MKVLVLLSGGIDSTTCLAMAIEK-YGVGQVVAL----------SAFYGQ-KHNKELQAAR 48

Query: 78 RVCDTINVSHYVFDYEERF 96
           + +   V     +  + F
Sbjct: 49 NIANYYRVELIELNLSKIF 67


>gi|238759702|ref|ZP_04620862.1| NAD+ synthase [Yersinia aldovae ATCC 35236]
 gi|238702130|gb|EEP94687.1| NAD+ synthase [Yersinia aldovae ATCC 35236]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|238762815|ref|ZP_04623784.1| NAD+ synthase [Yersinia kristensenii ATCC 33638]
 gi|238699120|gb|EEP91868.1| NAD+ synthase [Yersinia kristensenii ATCC 33638]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|167718743|ref|ZP_02401979.1| Asparagine synthase family protein [Burkholderia pseudomallei DM98]
          Length = 384

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV D
Sbjct: 3   AALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARVAD 52

Query: 82  TINVSHYVFDY--EERFRNAVI 101
           +I       D      F   ++
Sbjct: 53  SIGARLICIDIDRHLPFSERIV 74


>gi|149178474|ref|ZP_01857063.1| NAD synthetase [Planctomyces maris DSM 8797]
 gi|148842687|gb|EDL57061.1| NAD synthetase [Planctomyces maris DSM 8797]
          Length = 327

 Score = 43.6 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 3   VSEATRLNSLDLDKNPKDMR---VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNS 57
            +E  R+ S   +   K MR    V+ +SGG+DSSVV AL  R  G D V+G+ +  +++
Sbjct: 18  AAETERIVSWMQETVRKTMRKKGAVLGLSGGIDSSVVTALCVRAFGADRVLGIMMPEHDT 77

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTI 83
           +  S   G      D ++   + + I
Sbjct: 78  KDESLTFGQ--LLADHFNVEAIVENI 101


>gi|313905035|ref|ZP_07838405.1| argininosuccinate synthase [Eubacterium cellulosolvens 6]
 gi|313470105|gb|EFR65437.1| argininosuccinate synthase [Eubacterium cellulosolvens 6]
          Length = 412

 Score = 43.6 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK + GY++I V +   N  +  +        + +     
Sbjct: 4   KVVLAYSGGLD--TTALIPWLKENFGYEIICVCI---NCGQEEELTDDNLQERALSSGAS 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    Y+ D  + F +  I+P           Y  G +    +   R      L+ 
Sbjct: 59  -------KLYIEDVVDEFADEYIMPCVQAGAVYEHQYLLGTSMARPLIAKR------LVE 105

Query: 132 VTRQLGADVLATG 144
           +    GA  +  G
Sbjct: 106 IAHNEGASAICHG 118


>gi|85711121|ref|ZP_01042181.1| argininosuccinate synthase [Idiomarina baltica OS145]
 gi|85695034|gb|EAQ32972.1| argininosuccinate synthase [Idiomarina baltica OS145]
          Length = 400

 Score = 43.6 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   L+ + G +V+           A   +G+         A+   
Sbjct: 3   KVVLAYSGGLDTSVIVPWLRENYGCEVVAF--------VADVGQGAEELEGVEAKAKASG 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
            +     ++ D ++ F    I P          SY  G      V     V       + 
Sbjct: 55  AS---ECHIVDLKDEFAADYIYPSLKTGAVYEQSYLLGTAMARPVIAKAQV------ELA 105

Query: 134 RQLGADVLATG 144
           R++ AD LA G
Sbjct: 106 RKVNADALAHG 116


>gi|315186510|gb|EFU20269.1| argininosuccinate synthase [Spirochaeta thermophila DSM 6578]
          Length = 421

 Score = 43.6 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S++   LK    G +V+ V      +    K        + +     
Sbjct: 5   KKIVLAYSGGLDTSIIIPWLKEQYPGCEVVAVC-----TDVGQKEDWEALKQKAIASGAS 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    YV D +E      I P           Y  G +    +   + V       
Sbjct: 60  -------KIYVLDVKEELVRDYIFPMLRAGAIYEGKYLLGTSIARPLQAKKQV------E 106

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 107 IALKEGADAVAHG 119


>gi|227820147|ref|YP_002824118.1| NAD synthetase [Sinorhizobium fredii NGR234]
 gi|227339146|gb|ACP23365.1| NH3-dependent NAD(+) synthetase [Sinorhizobium fredii NGR234]
          Length = 335

 Score = 43.6 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 16/84 (19%)

Query: 13  DLDKNPKDMR---VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSC 67
            L    + MR   +V+ +SGG+DSSV  AL  R  G  +V  + +   +S   S R G  
Sbjct: 31  GLRAQLRGMRKRGLVLGLSGGIDSSVSVALAVRAVGAKNVFCLFMPENDSDPESLRLG-- 88

Query: 68  CAGQDVYDARRVCDTINVSHYVFD 91
                    R V +T  V   V D
Sbjct: 89  ---------RLVAETYGVEAIVED 103


>gi|227497021|ref|ZP_03927272.1| PP-loop superfamily ATP-binding protein [Actinomyces urogenitalis
           DSM 15434]
 gi|226833515|gb|EEH65898.1| PP-loop superfamily ATP-binding protein [Actinomyces urogenitalis
           DSM 15434]
          Length = 264

 Score = 43.6 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 60/217 (27%), Gaps = 86/217 (39%)

Query: 25  VAMSGGVDSS--------------VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           VA SGGVDS+              VVA L         GV               +  A 
Sbjct: 9   VAYSGGVDSALLAAVAAEVLGRENVVALL---------GV--------------SASLAA 45

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-----RTVK 125
            +   AR+V   I V    FD                   GE  LP    N        K
Sbjct: 46  SEHAIARKVATLIGVELVEFD------------------PGEQDLPGYRANGLDRCYYCK 87

Query: 126 FSDLLSVTRQ-----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            S L +   +        D +A G            G R     R +    D        
Sbjct: 88  -SALFTAIDERIVAEHHLDAVAYGENADDSRRPDRPGARAATEHRVLRPLAD-------- 138

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDS 217
                         + K  VR LAR +GL +ADK  S
Sbjct: 139 ------------AHLAKPQVRALARALGLPVADKPAS 163


>gi|154505539|ref|ZP_02042277.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149]
 gi|153794197|gb|EDN76617.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149]
          Length = 469

 Score = 43.6 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K+ +V+  +SGG DS     V   L+   G+DVI V +  +  R  + ++          
Sbjct: 17  KEDKVIAGISGGADSICLLFVLLRLQEKIGFDVIAVHV-NHGLRGENAKRDERFTETF-- 73

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                C   NV   V      +   V         A +  L   +  R V+      V  
Sbjct: 74  -----CRERNVPCIV------YHENVKE------IAAQKKLSVEEAGRLVRRKAFEEVRI 116

Query: 135 QLGADVLATGHY 146
           + G   +A  H+
Sbjct: 117 RYGGTKIALAHH 128


>gi|138894533|ref|YP_001124986.1| aluminum resistance protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266046|gb|ABO66241.1| Aluminum resistance protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 70/203 (34%), Gaps = 38/203 (18%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  ++  VVV  SGG DS+      K+   +V  VT   ++  +  +R+        +  
Sbjct: 2   KMNEEKAVVV-FSGGQDSTTCLFWAKKQFAEVEAVT---FDYGQRHRRE--------IEV 49

Query: 76  ARRVCDTINVSHYVFDYE--------ERFRNAVIVPFASSYAAGETPLPCVDCNR--TVK 125
           A  + D + V H V D             R  +    A     GE P   VD      + 
Sbjct: 50  AASIADELGVRHTVLDMSLLGQLAPNALTRGEI----AIEQKEGELPTTFVDGRNLLFLS 105

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           F+ +L   +Q GA  + TG           D       CR + ++        A     +
Sbjct: 106 FAAVL--AKQRGARHIVTG-------VCETDFSGYPD-CRDIFIKSLNVTLNLAMDYPFV 155

Query: 186 CDLRFPLGDMKKESVRDLAREMG 208
                PL  + K     LA E+G
Sbjct: 156 IHT--PLMWLTKAETWKLADELG 176


>gi|121606012|ref|YP_983341.1| LPS biosynthesis protein WbpG [Polaromonas naphthalenivorans CJ2]
 gi|120594981|gb|ABM38420.1| LPS biosynthesis protein WbpG [Polaromonas naphthalenivorans CJ2]
          Length = 380

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGGVDSS +A  +   G   + V               S  A  ++    + CD  
Sbjct: 71  ILGLSGGVDSSYLALKVHERGLRPLVVH--------VDAGWNSELAVANIEKIVKFCD-F 121

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++  +V D+EE      +     ++         V  +  + F+ +     + G   + +
Sbjct: 122 DLHTHVVDWEE------MRDLQLAFLRSGIANQDVPQD-HIFFASIYHYATKHGIKYVLS 174

Query: 144 GH-------YIRSRLYVGDDGKRRRIMCR--PMDLERDQ---SYFLFATTQ---QQLCDL 188
           G        Y ++      D      + R       +D    S+F +       +QL   
Sbjct: 175 GGNLATEGIYPKAWTGSAMDAINLHAIHRKFGQRRLKDYRTVSFFDYYLWYPFVKQL-RT 233

Query: 189 RFPLGDMK---KESVRDLAREMG 208
             PL  M    K +V +L +++G
Sbjct: 234 VRPLNYMPYDKKMAVVELEQKIG 256


>gi|307719682|ref|YP_003875214.1| argininosuccinate synthase [Spirochaeta thermophila DSM 6192]
 gi|306533407|gb|ADN02941.1| argininosuccinate synthase [Spirochaeta thermophila DSM 6192]
          Length = 421

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 27/133 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S++   LK    G +V+ V      +    K        + +     
Sbjct: 5   KKIVLAYSGGLDTSIIIPWLKEQYPGCEVVAVC-----TDVGQKEDWEALKEKALASGAS 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    YV D +E      I P           Y  G +    +   + V       
Sbjct: 60  -------KIYVLDVKEELVRDYIFPMLRAGAIYEGKYLLGTSIARPLQAKKQV------E 106

Query: 132 VTRQLGADVLATG 144
           +  + GAD +A G
Sbjct: 107 IALKEGADAVAHG 119


>gi|304315126|ref|YP_003850273.1| ATP-utilizing enzyme [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588585|gb|ADL58960.1| predicted ATP-utilizing enzyme [Methanothermobacter marburgensis
           str. Marburg]
          Length = 361

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC---CAGQDVYD 75
           K  +V V  S G DS   A L      D+ G      +S                  + +
Sbjct: 15  KGRKVAVGFSCGADS--TALL------DIAG------DSADEVAAFTVDTGFMPPGFIEN 60

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           A  +  ++ V H++ +         +           TP  C+ C + + +S +LS  R+
Sbjct: 61  ASSIAGSLGVEHFIINRPLLENQEFVS---------NTPERCLVC-KNIIYSSILSEARK 110

Query: 136 LGADVLATGHYIR 148
            G + +  G    
Sbjct: 111 RGFEAVLDGTTAS 123


>gi|226479158|emb|CAX73074.1| putative GMP synthase [Schistosoma japonicum]
          Length = 739

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 19/80 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           ++++ +SGGVDS+V AALL +         +I V +     RK    K            
Sbjct: 214 KILILLSGGVDSTVCAALLSKTLDPSQ---IIAVHIDNGFLRKDESSKVIESL------- 263

Query: 77  RRVCDTINVSHYVFDYEERF 96
                ++ +  ++ +   RF
Sbjct: 264 ----KSLGIKVHLINAGLRF 279


>gi|268593413|ref|ZP_06127634.1| argininosuccinate synthase [Providencia rettgeri DSM 1131]
 gi|291311112|gb|EFE51565.1| argininosuccinate synthase [Providencia rettgeri DSM 1131]
          Length = 406

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDARRV 79
            ++V+A SGG+D+S +   LK             Y+  +            +D+    + 
Sbjct: 6   KKIVLAYSGGLDTSAIIPWLKE-----------NYDDCEVVAFVADVGQDREDLVGVEKK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    YV D  E F    I P          SY  G +    +     V       
Sbjct: 55  ALQSGASECYVVDLREEFIKEYIYPVLKTGALYEGSYLLGTSMARPIIAKAQV------E 108

Query: 132 VTRQLGADVLATG 144
           +  ++GAD +A G
Sbjct: 109 IALKVGADAVAHG 121


>gi|225849954|ref|YP_002730188.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1]
 gi|254789038|sp|C0QU23|TILS_PERMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225646259|gb|ACO04445.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1]
          Length = 452

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 39/237 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV--TLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  R++VA SGG+DS+V+  LL       I     L++ +   A          +   D 
Sbjct: 18  EGDRILVAFSGGIDSTVLTYLL-------IKFRDHLKISDIYLAHLNHS--LRKESDED- 67

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R C+         D+ +++   +          A +         R  ++S    V  +
Sbjct: 68  QRFCE---------DFAKKYGLEIFTKKVDIKSLAEKEKKSIEQKAREERYSFFRKVMEE 118

Query: 136 LGADVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              + LATGH++       +    +  R   +    +                D+  PL 
Sbjct: 119 RSINRLATGHHLSDLVETMIMWFIQGNRKGIKGFRPKE--------------RDIIRPLY 164

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLN 249
            + K+ + + ARE G++      + +  F++     +++  I     +LEG ++ L+
Sbjct: 165 LINKDQIENYAREKGIEYRIDITNFETDFLRNRIRHNIIPHIKGINPSLEGSLLTLS 221


>gi|76155514|gb|AAX26805.2| SJCHGC05120 protein [Schistosoma japonicum]
          Length = 200

 Score = 43.6 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 19/80 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           ++++ +SGGVDS+V AALL +         +I V +     RK    K            
Sbjct: 120 KILILLSGGVDSTVCAALLSKTLDPSQ---IIAVHIDNGFLRKDESSKVIESL------- 169

Query: 77  RRVCDTINVSHYVFDYEERF 96
                ++ +  ++ +   RF
Sbjct: 170 ----KSLGIKVHLINAGLRF 185


>gi|332162672|ref|YP_004299249.1| NAD synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318606778|emb|CBY28276.1| nad synthetase; Glutamine amidotransferase chain of NAD synthetase
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666902|gb|ADZ43546.1| NAD synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|256082831|ref|XP_002577656.1| GMP synthetase [Schistosoma mansoni]
 gi|238662982|emb|CAZ33894.1| GMP synthetase (glutamine-hydrolysing) [Schistosoma mansoni]
          Length = 739

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 17/19 (89%)

Query: 22  RVVVAMSGGVDSSVVAALL 40
           ++++ +SGGVDS+V AALL
Sbjct: 214 KILILLSGGVDSTVCAALL 232


>gi|123441385|ref|YP_001005372.1| NAD synthetase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088346|emb|CAL11137.1| putative glutamine-dependent NAD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|115475912|ref|NP_001061552.1| Os08g0326600 [Oryza sativa Japonica Group]
 gi|24414065|dbj|BAC22314.1| putative GMP synthetase [Oryza sativa Japonica Group]
 gi|113623521|dbj|BAF23466.1| Os08g0326600 [Oryza sativa Japonica Group]
 gi|215694477|dbj|BAG89422.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 544

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 60/196 (30%), Gaps = 39/196 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+ +  G  +  V +     R   + +       D      
Sbjct: 237 DEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYNERERVMLTFESD------ 290

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  E+F +    V  P       G   +          F D      Q
Sbjct: 291 ----LHLPVTCVDASEQFLSKLKGVKDPEMKRKIIGREFIAV--------FDDFAHKLEQ 338

Query: 136 LGADVLATGHYIRSRLYVG--------DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
                   G+ ++  LY            G+      +           +    +     
Sbjct: 339 KIGKRP--GYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-------VGGLPKDMKLK 389

Query: 188 LRFPLGDMKKESVRDL 203
           L  PL  + K+ VR L
Sbjct: 390 LIEPLKLLFKDEVRKL 405


>gi|85859274|ref|YP_461476.1| argininosuccinate synthase [Syntrophus aciditrophicus SB]
 gi|119361332|sp|Q2LT97|ASSY_SYNAS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|85722365|gb|ABC77308.1| argininosuccinate synthase [Syntrophus aciditrophicus SB]
          Length = 401

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L    G +VI        +    K +      + +      
Sbjct: 6   KKVVLAYSGGLDTSVIVQWLIETYGCEVIAF-----AADVGQKEELEGLREKAIKTGAS- 59

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  E F    + P          +Y  G +    +   R V       +
Sbjct: 60  ------KIYIEDLREEFARDFVFPALRANAIYEGTYLLGTSLARPLIAKRQV------EI 107

Query: 133 TRQLGADVLATG 144
            R  GAD +  G
Sbjct: 108 ARAEGADAVCHG 119


>gi|238788204|ref|ZP_04631999.1| NAD+ synthase [Yersinia frederiksenii ATCC 33641]
 gi|238723791|gb|EEQ15436.1| NAD+ synthase [Yersinia frederiksenii ATCC 33641]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|145219690|ref|YP_001130399.1| argininosuccinate synthase [Prosthecochloris vibrioformis DSM 265]
 gi|189046398|sp|A4SEI8|ASSY_PROVI RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145205854|gb|ABP36897.1| argininosuccinate synthase [Chlorobium phaeovibrioides DSM 265]
          Length = 400

 Score = 43.6 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 16/129 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  R+ +A SGG+D+S++   LK   G DV+ +T             G+    +++    
Sbjct: 2   QKERIALAYSGGLDTSIMIKWLKDKYGADVVAIT-------------GNLGQQKEIEGLE 48

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
               +    S +  D +++F    I     + A  E   P      R +    ++ V  +
Sbjct: 49  EKAVSTGASSFHFVDLKKQFVEDYIWRALKAGALYEDVYPLATALGRPLLAKAMVDVALE 108

Query: 136 LGADVLATG 144
               +LA G
Sbjct: 109 ENCTMLAHG 117


>gi|4469317|emb|CAB38325.1| NAD(+) synthase (glutamine-hydrolysing) [Streptomyces coelicolor
           A3(2)]
          Length = 538

 Score = 43.6 bits (102), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA++     G + V GV++                +G    DA  + 
Sbjct: 282 VLIGLSGGIDSALVASIACDALGAEHVYGVSM-----------PSKYSSGHSRDDAAELA 330

Query: 81  DTINVSHYVFDYEERF 96
               + +     E  F
Sbjct: 331 RRTGLHYRTVSIEPMF 346


>gi|12045244|ref|NP_073055.1| NH(3)-dependent NAD+ synthetase, putative [Mycoplasma genitalium
           G37]
 gi|255660408|ref|ZP_05405817.1| NH(3)-dependent NAD+ synthetase, putative [Mycoplasma genitalium
           G37]
 gi|1346654|sp|P47623|NADE_MYCGE RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|3844972|gb|AAC71610.1| NH(3)-dependent NAD+ synthetase, putative [Mycoplasma genitalium
           G37]
 gi|166078956|gb|ABY79574.1| NH(3)-dependent NAD+ synthetase, putative [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 248

 Score = 43.6 bits (102), Expect = 0.063,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 70/205 (34%), Gaps = 50/205 (24%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVI-GVTLQLYNSRKASKRKGSCCA 69
            D  K  K   V+  +SGG+DS+VVAA+ K   G++    + + + NS+   +       
Sbjct: 16  FDYVKKSKAKGVIFGLSGGIDSAVVAAIAKETFGFENHLALIMHINNSKLDFQATSELVK 75

Query: 70  GQDVYDARRVCDTINVSHYVFDYEERFRNAV----IVPFASSYAAGETPLPCVDCNRTVK 125
                      ++IN+       EE F   V    I P      AG            ++
Sbjct: 76  KMQF-------NSINIEL-----EESFNLLVKTLGIDPKKDFLTAGNIKA-------RLR 116

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              L +  ++    VL TG+++   L     G   +      D+                
Sbjct: 117 MITLYAYAQKHNFLVLGTGNFVEYTL-----GYFTKWGDGACDIA--------------- 156

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
                PL  + KE V  LA+   + 
Sbjct: 157 -----PLAWLLKEDVYKLAKHFNIP 176


>gi|323143836|ref|ZP_08078503.1| argininosuccinate synthase [Succinatimonas hippei YIT 12066]
 gi|322416428|gb|EFY07095.1| argininosuccinate synthase [Succinatimonas hippei YIT 12066]
          Length = 409

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 21/135 (15%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +  +VV+A SGG+D+S +   LK + G +V+     +   R+             + 
Sbjct: 5   EKKQYKKVVLAYSGGLDTSTIVPWLKENYGCEVVCFVADVGQEREDLDG---------IE 55

Query: 75  D-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN----RTVKFSDL 129
           D A+    T      V D  E F   V      ++  G              R V    +
Sbjct: 56  DKAKASGAT---KCIVKDLREEF---VRDYVYETFKTGAIYEGDYMLGTAIARPVIAKAM 109

Query: 130 LSVTRQLGADVLATG 144
           ++   + GAD +A G
Sbjct: 110 VACALEEGADAIAHG 124


>gi|238750370|ref|ZP_04611871.1| NAD+ synthase [Yersinia rohdei ATCC 43380]
 gi|238711301|gb|EEQ03518.1| NAD+ synthase [Yersinia rohdei ATCC 43380]
          Length = 540

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + +   V   E  F
Sbjct: 333 ILGIEFDVLSIEPMF 347


>gi|224531610|ref|ZP_03672242.1| NAD+ synthetase [Borrelia valaisiana VS116]
 gi|224511075|gb|EEF81481.1| NAD+ synthetase [Borrelia valaisiana VS116]
          Length = 512

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G + V+G+++                +   + DA+ +
Sbjct: 259 KVHLGLSGGIDSALVACLACFALGAENVVGISM-----------PSKFSSVDSISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFR 97
              +         ++ F 
Sbjct: 308 SKKLGFKLIEMPIKDLFE 325


>gi|26345208|dbj|BAC36254.1| unnamed protein product [Mus musculus]
          Length = 561

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANYIGSEHHEVLFNSE 318


>gi|74137519|dbj|BAE35800.1| unnamed protein product [Mus musculus]
          Length = 561

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANYIGSEHHEVLFNSE 318


>gi|114265|sp|P19891|ASNS_CRIGR RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|191064|gb|AAA36977.1| asparagine synthetase [Cricetulus longicaudatus]
 gi|28375000|emb|CAA31409.1| unnamed protein product [Cricetulus longicaudatus]
          Length = 561

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANYIGSEHHEVLFNSE 318


>gi|33469123|ref|NP_036185.1| asparagine synthetase [glutamine-hydrolyzing] [Mus musculus]
 gi|6707669|sp|Q61024|ASNS_MOUSE RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|1147605|gb|AAA85125.1| asparagine synthetase [Mus musculus]
 gi|13542690|gb|AAH05552.1| Asparagine synthetase [Mus musculus]
 gi|74195566|dbj|BAE39594.1| unnamed protein product [Mus musculus]
 gi|148681996|gb|EDL13943.1| asparagine synthetase, isoform CRA_a [Mus musculus]
 gi|148681997|gb|EDL13944.1| asparagine synthetase, isoform CRA_a [Mus musculus]
          Length = 561

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--- 75
           D R+   +SGG+DSS V A+LLK           QL  ++     +      +D  D   
Sbjct: 250 DRRIGCLLSGGLDSSLVAASLLK-----------QLKEAQVQYPLQTFAIGMEDSPDLLA 298

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V + I   H+   +   
Sbjct: 299 ARKVANYIGSEHHEVLFNSE 318


>gi|219119443|ref|XP_002180482.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407955|gb|EEC47890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 538

 Score = 43.6 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 50/206 (24%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D  V+ A+SGGVDS+V A L+ R     IG      L ++    K + S    +   D  
Sbjct: 237 DGHVLGAVSGGVDSTVAAVLMTRA----IGDRFHAVLVDNGCLRKDEASAVLKRMREDC- 291

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  V+    D  +RF +            G T     +  R +     + V ++  
Sbjct: 292 ------GVNLRCVDASDRFLD---------LLKGVT---DPEKKRKIIGGTFIDVFQE-- 331

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE-------RDQSYF------LFATTQQQ 184
                      +     + G  + ++   +  +       +  S        +       
Sbjct: 332 ----------EAAKIERESGPCQYLLQGTLYPDVIESISYKGPSATIKTHHNVGGLPASM 381

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
              L  PL ++ K+ VR+L   +G+D
Sbjct: 382 NLKLIEPLRELFKDEVRELGMALGID 407


>gi|308048511|ref|YP_003912077.1| NAD+ synthetase [Ferrimonas balearica DSM 9799]
 gi|307630701|gb|ADN75003.1| NAD+ synthetase [Ferrimonas balearica DSM 9799]
          Length = 539

 Score = 43.2 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  V +                +   V DAR   +
Sbjct: 283 VLGLSGGIDSALTLAIAADALGADKVQAVMM-----------PFKYTSSMSVEDARAQAE 331

Query: 82  TINVSHYVFDYEERF 96
            + V++ V   E  F
Sbjct: 332 ALGVTYDVVSIEPMF 346


>gi|297270049|ref|XP_001106949.2| PREDICTED: argininosuccinate synthase-like [Macaca mulatta]
          Length = 533

 Score = 43.2 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 58/168 (34%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG------------------------VTLQLYNSR 58
           VV+A SGG+D+S +   LK  GYDVI                         V L ++ + 
Sbjct: 83  VVLAYSGGLDTSCILVWLKEQGYDVIAYLPTLARRKTSRKIRKLIESGALIVNLGMWQAD 142

Query: 59  KASKRKGSCCAGQDVYDARRVCDTINVSH--------------YVFDYEERFRNAVIVPF 104
               R      G      +  C  +   H              ++ D    F    I P 
Sbjct: 143 PCPIRDIYGEQGH-----QDPCSHVLTPHGEALATCAPSFGGVFIEDVSREFVEEFIWPA 197

Query: 105 A-------SSYAAGETPL-PCVDCNRTVKFSDLLSVTRQLGADVLATG 144
                     Y  G +   PC+   +       + + ++ GA  ++ G
Sbjct: 198 IQSSALYEDRYLLGTSLARPCIARKQ-------VEIAQREGAKYVSHG 238


>gi|302544557|ref|ZP_07296899.1| GMP synthase (Glutamine amidotransferase) [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462175|gb|EFL25268.1| GMP synthase (Glutamine amidotransferase) [Streptomyces
           himastatinicus ATCC 53653]
          Length = 528

 Score = 43.2 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
            R +  +SGGVDS+V AAL+++  G  +  V 
Sbjct: 224 KRAICGLSGGVDSAVAAALVQKAIGDQLTCVY 255


>gi|328948875|ref|YP_004366212.1| GMP synthase, small subunit [Treponema succinifaciens DSM 2489]
 gi|328449199|gb|AEB14915.1| GMP synthase, small subunit [Treponema succinifaciens DSM 2489]
          Length = 625

 Score = 43.2 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 39/201 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-G-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           D  V++ +SGGVDS+V  ALL +  G   V+G+ +     RK   +K        V +A 
Sbjct: 214 DKNVLLFLSGGVDSTVAFALLNKALGQKRVLGLHIDNGFMRKNESKK--------VEEAY 265

Query: 78  RVCDTINVS-HYVFDYEERFRNAV---IVPFASSYAAGETP----LPCVDCNRTVKFSDL 129
           +       S   V D  + F  AV     P     A GE         V   +  +   L
Sbjct: 266 K---NHGFSNFIVEDASKTFLKAVENLTDPQKKRMAIGENFITVRNEVVAKQKFDENKWL 322

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189
           L+    L  D++ +G    S +        +    R   +++          ++ L  + 
Sbjct: 323 LAQ-GTLYPDIIESGGTKNSNVI-------KTHHNRVDGIQK--------LIEKGL--II 364

Query: 190 FPLGDMKKESVRDLAREMGLD 210
            PL D+ K+ VR + +++GL+
Sbjct: 365 EPLKDLYKDEVRAIGKKLGLE 385


>gi|300932931|ref|ZP_07148187.1| GMP synthase [Corynebacterium resistens DSM 45100]
          Length = 530

 Score = 43.2 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 226 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 258


>gi|134292246|ref|YP_001115982.1| NAD synthetase [Burkholderia vietnamiensis G4]
 gi|134135403|gb|ABO56517.1| NH(3)-dependent NAD(+) synthetase [Burkholderia vietnamiensis G4]
          Length = 295

 Score = 43.2 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 63/207 (30%), Gaps = 69/207 (33%)

Query: 24  VVAMSGGVDSSVV---AALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           V+ +SGGVDSS     A L        GYD   + ++L N               D  DA
Sbjct: 62  VLGISGGVDSSTAGRLAQLAVEQLRADGYDARFIAMRLPN-----------GVQNDEADA 110

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R                           +   A ET    V                 +
Sbjct: 111 QRA-------------------------LAFVRADETFTVDVKP-----------AADAM 134

Query: 137 GADVLATGH----YIRSRLYVGDDGKRRRIMC--------RPMDLERDQ---SYFLFATT 181
            A ++A+GH      +     G+   R R++         R + +  D    S   F T 
Sbjct: 135 LASLVASGHAFETAAQQDFVHGNIKARERMIAQYAVAGARRGIVIGTDHAAESLMGFFTK 194

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG 208
                    PL  + K  VR +AR +G
Sbjct: 195 FGDGGADVLPLAGLSKRRVRAVARALG 221


>gi|328885754|emb|CCA58993.1| Queuosine Biosynthesis QueC ATPase [Streptomyces venezuelae ATCC
          10712]
          Length = 236

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          + +       V+  SGG+DS+V A  L   G     VT+ L +     +        +++
Sbjct: 1  MPRTAAPRHAVLIFSGGLDSAVTAYKLLDAG-----VTVSLLSFNYGQR------HVKEL 49

Query: 74 YDARRVCDTINVSHYVFDY 92
            A  + D + VSH + D 
Sbjct: 50 AQAATLADQLGVSHDIVDL 68


>gi|325971025|ref|YP_004247216.1| argininosuccinate synthase [Spirochaeta sp. Buddy]
 gi|324026263|gb|ADY13022.1| Argininosuccinate synthase [Spirochaeta sp. Buddy]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 25/130 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++++A SGG+D+SV+   L   G+DVI     +  +   +  +    A      A +V  
Sbjct: 5   KIILAYSGGLDTSVILKWLANKGFDVIAYVANVGQNEDFAAIEKKALATG----ASKV-- 58

Query: 82  TINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 YV D  +      I P          +Y  G +    +   R +       + R
Sbjct: 59  ------YVEDLRKELVTDYIFPALKANTIYEGTYMLGTSLARPIIAKRQI------EIAR 106

Query: 135 QLGADVLATG 144
           + G   +A G
Sbjct: 107 KEGTVYVAHG 116


>gi|293365936|ref|ZP_06612639.1| transcription regulator ExsB [Streptococcus oralis ATCC 35037]
 gi|307702339|ref|ZP_07639297.1| queuosine biosynthesis protein queC [Streptococcus oralis ATCC
           35037]
 gi|291315614|gb|EFE56064.1| transcription regulator ExsB [Streptococcus oralis ATCC 35037]
 gi|307624142|gb|EFO03121.1| queuosine biosynthesis protein queC [Streptococcus oralis ATCC
           35037]
          Length = 217

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTF----------SYGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDMEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATG 144
             + TG
Sbjct: 114 QDIVTG 119


>gi|262306055|gb|ACY45620.1| gln amidotransferase [Idiogaryops pumilis]
          Length = 196

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%)

Query: 20 DMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQL 54
          D +V++ +SGGVDS+V  ALL     K     VI + +  
Sbjct: 43 DNKVLMLLSGGVDSTVCTALLGSALRKDQ---VIAIHIDN 79


>gi|222530555|ref|YP_002574437.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457402|gb|ACM61664.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 235

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 44/213 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--KRDGY----DVIGVTLQLYNSRKASKRKGS 66
           D +   +  ++ V +S G DS  +   L   R  Y    +V+ +T+ +            
Sbjct: 14  DFNMIEEGDKIAVGVSAGKDSLTMLYTLSFLRKFYPKKFEVVAITVDMGFEGM------- 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                D    +  CD I+V  ++     + +  V               PC  C   ++ 
Sbjct: 67  -----DFLPIKEFCDKIDVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
             L S  + LG + +A GH++       DD      +    +           + +  L 
Sbjct: 112 GILNSTAKSLGCNKVALGHHL-------DDVVETFFLSLFFEGR-----IYCFSPKTYLD 159

Query: 187 D----LRFPLGDMKKESVRDLAREMGLDIADKS 215
                   P+  +K+  +R  A+++ L +    
Sbjct: 160 RTQITTIRPMIYLKEHDLRSAAKKLELPVITNP 192


>gi|89094846|ref|ZP_01167779.1| ExsB [Oceanospirillum sp. MED92]
 gi|89080901|gb|EAR60140.1| ExsB [Oceanospirillum sp. MED92]
          Length = 227

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 17/79 (21%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + VV +SGG+DS+   A+    GYD              S   G     + +  A+ +
Sbjct: 6  GKKAVVLLSGGLDSATALAMAADRGYDC----------YVLSFDYGQRSLTE-LNAAKEI 54

Query: 80 CDTIN------VSHYVFDY 92
             +N      +  ++ D+
Sbjct: 55 AKQLNAREHRVIRLHLEDF 73


>gi|326791227|ref|YP_004309048.1| tRNA sulfurtransferase [Clostridium lentocellum DSM 5427]
 gi|326541991|gb|ADZ83850.1| tRNA sulfurtransferase [Clostridium lentocellum DSM 5427]
          Length = 393

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +  + +SGG+DS V   ++ + G +V  V         A          + V  A++V
Sbjct: 181 NGKATLLLSGGIDSPVAGWMIAKRGVEVDAVYFH------APPYTSDRAKEKVVDLAKKV 234

Query: 80  CDTIN-VSHYVFDYEE 94
                 +  ++ ++ +
Sbjct: 235 AIYTGNMKLHIINFTD 250


>gi|291533245|emb|CBL06358.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Megamonas hypermegale ART12/1]
          Length = 258

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVY-DA 76
           + ++++ +SGG DS  +A  L           L+    +  +      +    +D   +A
Sbjct: 25  NDKILIGLSGGKDSLFMAYALTE---------LKNTLKKNFTLGAITINPMFTKDFSCEA 75

Query: 77  -RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            ++ CD +N+ +++        + V    A + A  +    C  C    +   +    ++
Sbjct: 76  MQKFCDKLNMPYHI--------HEV--NIAETIANQDNKNACYSC-AFFRRGAINGYAKE 124

Query: 136 LGADVLATGH 145
            G + +A  H
Sbjct: 125 HGYNKIAYAH 134


>gi|222085029|ref|YP_002543558.1| argininosuccinate synthase protein [Agrobacterium radiobacter K84]
 gi|221722477|gb|ACM25633.1| argininosuccinate synthase protein [Agrobacterium radiobacter K84]
          Length = 407

 Score = 43.2 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            ++V++ SGG+D+S++   L+   Y    VT                  G+++  AR   
Sbjct: 6   KKIVLSYSGGLDTSIILKWLQET-YKCEVVTF-----------TADLGQGEELEPARAKA 53

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           + + +    + D  E F    + P           Y  G          R +    L+ +
Sbjct: 54  EMLAIKDIRIVDVREEFVRDFVFPMFRANTVYEGQYLLG------SSIARPLIAKHLVRI 107

Query: 133 TRQLGADVLATG 144
            + +GAD ++ G
Sbjct: 108 AQDVGADAISHG 119


>gi|229820340|ref|YP_002881866.1| NAD+ synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566253|gb|ACQ80104.1| NAD+ synthetase [Beutenbergia cavernae DSM 12333]
          Length = 547

 Score = 43.2 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 22/109 (20%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           + +A  L   D  +      VV+ +SGG+DS++ A +     G D V+GV +        
Sbjct: 271 MYDAVVLGLRDYARKNGFTDVVLGISGGIDSALTATVACDAVGADHVLGVAM-------- 322

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYA 109
                +  +   + DAR + +   +          +R   I PF  ++ 
Sbjct: 323 ---PSAYSSEHSLADARELAERTGL---------TYREQPIEPFVDAFQ 359


>gi|299470329|emb|CBN78379.1| argininosuccinate synthetase [Ectocarpus siliculosus]
          Length = 432

 Score = 43.2 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD--ARRV 79
           +VV+A SGG+D+SV+   L   G++VI      Y +    + +      +   D  A +V
Sbjct: 17  KVVLAYSGGLDTSVILKWLSGQGFEVIC-----YCANVGQQGEDYDAITKKAKDCGASKV 71

Query: 80  CDTINVSHYVFDYEERF-----RNAVIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  E F       AV         Y  G +    V   R V       +
Sbjct: 72  --------YIEDLCEEFVTDFVFEAVKANAQYEGRYLLGTSLARPVIAKRQV------EI 117

Query: 133 TRQLGADVLATG 144
            ++ GA  ++ G
Sbjct: 118 AQKEGAKYVSHG 129


>gi|239820928|ref|YP_002948113.1| NAD+ synthetase [Variovorax paradoxus S110]
 gi|239805781|gb|ACS22847.1| NAD+ synthetase [Variovorax paradoxus S110]
          Length = 566

 Score = 43.2 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV  SGG+DS++  AL     G  +V+ +T+                +   V D+ R+C 
Sbjct: 301 VVGSSGGIDSALTLALAVEALGAQNVVAITM-----------PSRFSSAGSVDDSERLCR 349

Query: 82  TINVSHY 88
            + V   
Sbjct: 350 NLGVPLE 356


>gi|322392415|ref|ZP_08065875.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780]
 gi|321144407|gb|EFX39808.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780]
          Length = 425

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYD 75
           RVV+A+SGG+DS  +  LL    K  G +   + L    +  R  S  +           
Sbjct: 21  RVVLALSGGLDSMFLFHLLSTYQKELGIE---LFLAHVNHKQRPESDNEEYEL------- 70

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
            R++ + + V  YV  +   F  A    F   +  
Sbjct: 71  -RKLAEQVGVPIYVAHFTGDFSEANARQFRYEFLK 104


>gi|288957455|ref|YP_003447796.1| queuosine biosynthesis protein [Azospirillum sp. B510]
 gi|288909763|dbj|BAI71252.1| queuosine biosynthesis protein [Azospirillum sp. B510]
          Length = 242

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+ V A+ K +GY V             S R G      ++  ARRV   +
Sbjct: 11 VVLVSGGLDSTTVLAIAKAEGYRV----------NALSFRYGQ-RHSVELEAARRVVAAM 59

Query: 84 NVSHYVF 90
           V  +V 
Sbjct: 60 GVERHVI 66


>gi|226287515|gb|EEH43028.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 404

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 22/133 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV +  SGG DS+V+A++LK    R  Y   G+ L L +  +  K          +   +
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERHNY---GLHLTLLSIDEGIKGY----RDDSLETVK 105

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           R     ++   +  Y+E +    + V+         G+    C  C    +   L     
Sbjct: 106 RNAAQYSMPLEIVGYDELYGWTMDQVVA------EVGKKGN-CTYCGVFRR-QALDRGAA 157

Query: 135 QLGADVLATGHYI 147
           +LG   + TGH  
Sbjct: 158 KLGIKHVVTGHNA 170


>gi|225678029|gb|EEH16313.1| VEG136 [Paracoccidioides brasiliensis Pb03]
          Length = 404

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 22/133 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV +  SGG DS+V+A++LK    R  Y   G+ L L +  +  K          +   +
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERHNY---GLHLTLLSIDEGIKGY----RDDSLETVK 105

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           R     ++   +  Y+E +    + V+         G+    C  C    +   L     
Sbjct: 106 RNAAQYSMPLEIVGYDELYGWTMDQVVA------EVGKKGN-CTYCGVFRR-QALDRGAA 157

Query: 135 QLGADVLATGHYI 147
           +LG   + TGH  
Sbjct: 158 KLGIKHVVTGHNA 170


>gi|167749693|ref|ZP_02421820.1| hypothetical protein EUBSIR_00651 [Eubacterium siraeum DSM 15702]
 gi|167657316|gb|EDS01446.1| hypothetical protein EUBSIR_00651 [Eubacterium siraeum DSM 15702]
 gi|291529825|emb|CBK95410.1| thiazole biosynthesis/tRNA modification protein ThiI [Eubacterium
           siraeum 70/3]
 gi|291556460|emb|CBL33577.1| thiazole biosynthesis/tRNA modification protein ThiI [Eubacterium
           siraeum V10Sc8a]
          Length = 396

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 45/193 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + ++ +SGG+DS V   ++ + G  V G+                  + + +     +C+
Sbjct: 179 KALLLLSGGIDSPVAGYMMAKRGLIVDGIHF----------VSPPYTSERALMKVETLCE 228

Query: 82  TI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +     ++  Y   + E                   P                ++  + 
Sbjct: 229 KLTSYCGDIRFYCVPFTE----------IQEALRDNCPEE------------FFTIIMRR 266

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDM 195
               +A     R+       G+        +     Q+      T        F P+  M
Sbjct: 267 LMVKIANIIAERNEYGALVTGE-------SVGQVASQTLKAIQCTDAAAEYPVFRPVIGM 319

Query: 196 KKESVRDLAREMG 208
            K+ + D+AR++ 
Sbjct: 320 DKKEIIDIARKID 332


>gi|159041820|ref|YP_001541072.1| PP-loop domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920655|gb|ABW02082.1| PP-loop domain protein [Caldivirga maquilingensis IC-167]
          Length = 337

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 24/204 (11%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRDGY----DVIGVTLQLYNSRKASKRKGSCCAGQ 71
              RV +A+SGG DS V+  L   L+R G      V+        S    +         
Sbjct: 49  SGDRVGIAVSGGKDSLVLMYLLGKLRRLGRIPKDTVLIAF-----SIDEGQPYSCVRRAN 103

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            +    ++ +  N+ + VF + E F           +  G     C  C   ++   +  
Sbjct: 104 SMDYVAKLTEEFNIEYKVFRFSELFGVTAFDIAQGLWGKGVNTHMCTICG-VMRRRAMNI 162

Query: 132 VTRQLGADVLATGHY----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           V R L    +ATGH      ++ L        +R          D         +++   
Sbjct: 163 VGRMLNLTKIATGHNLDDEAQTVLLNVTGNDVKRFAWFGATPSND-------VAEEEFIP 215

Query: 188 LRFPLGDMKKESVRDLAREMGLDI 211
              PL  +++E V   A   G+ +
Sbjct: 216 RIKPLRFIREEEVALYAYYHGIPL 239


>gi|21220709|ref|NP_626488.1| NAD(+) synthase (glutamine-hydrolysing) [Streptomyces coelicolor
           A3(2)]
 gi|13751883|emb|CAC37264.1| NAD(+) synthase (glutamine-hydrolysing) [Streptomyces coelicolor
           A3(2)]
          Length = 613

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA++     G + V GV++                +G    DA  + 
Sbjct: 357 VLIGLSGGIDSALVASIACDALGAEHVYGVSM-----------PSKYSSGHSRDDAAELA 405

Query: 81  DTINVSHYVFDYEERF 96
               + +     E  F
Sbjct: 406 RRTGLHYRTVSIEPMF 421


>gi|114799175|ref|YP_762162.1| argininosuccinate synthase [Hyphomonas neptunium ATCC 15444]
 gi|119361281|sp|Q0BWI1|ASSY_HYPNA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|114739349|gb|ABI77474.1| argininosuccinate synthase [Hyphomonas neptunium ATCC 15444]
          Length = 413

 Score = 43.2 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 59/219 (26%)

Query: 15  DKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           +      +VV+A SGG+D+S++   L+   G +V+  T                  G+++
Sbjct: 3   NAASAPKKVVLAYSGGLDTSIILKWLQVEFGCEVVTFT-------------ADLGQGEEL 49

Query: 74  YDARRVCDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRT 123
             AR+      V     ++ D  E F    + P   +       Y  G +    +   R 
Sbjct: 50  EPARKKALAAGVKPENIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLIAKRQ 109

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF---LFAT 180
           +       +   +GAD +  G                           DQ  F    +  
Sbjct: 110 I------EIADMVGADAVCHG---------------------ATGKGNDQVRFELGYYGL 142

Query: 181 TQQQLCDLRFPLGDM---KKESVRDLAREMGLDIADKSD 216
                  +  P  D     +  +   A E G++IA    
Sbjct: 143 NPDI--KVIAPWRDWAFKSRTDLLKFAEEHGIEIAKDKR 179


>gi|167902750|ref|ZP_02489955.1| Asparagine synthase family protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 580

 Score = 43.2 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV D
Sbjct: 225 AALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARVAD 274

Query: 82  TINVSHYVFDY--EERFRNAVI 101
           +I       D      F   ++
Sbjct: 275 SIGARLICIDIDRHLPFSERIV 296


>gi|134282382|ref|ZP_01769087.1| asparagine synthase family protein [Burkholderia pseudomallei 305]
 gi|134246420|gb|EBA46509.1| asparagine synthase family protein [Burkholderia pseudomallei 305]
          Length = 533

 Score = 43.2 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV D
Sbjct: 178 AALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARVAD 227

Query: 82  TINVSHYVFDY--EERFRNAVI 101
           +I       D      F   ++
Sbjct: 228 SIGARLICIDIDRHLPFSERIV 249


>gi|126439566|ref|YP_001058937.1| asparagine synthase [Burkholderia pseudomallei 668]
 gi|126219059|gb|ABN82565.1| asparagine synthase family protein [Burkholderia pseudomallei 668]
          Length = 531

 Score = 43.2 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            A+SGGVDSS  A LL++  G    +  V L   +S          C  +D+  A RV D
Sbjct: 176 AALSGGVDSSAGAILLRKALGAQAPLAAVHLFSPSSPD--------CYERDL--AARVAD 225

Query: 82  TINVSHYVFDY--EERFRNAVI 101
           +I       D      F   ++
Sbjct: 226 SIGARLICIDIDRHLPFSERIV 247


>gi|331699094|ref|YP_004335333.1| GMP synthase [Pseudonocardia dioxanivorans CB1190]
 gi|326953783|gb|AEA27480.1| GMP synthase (glutamine-hydrolyzing) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 526

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 11/78 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   V  +SGGVDS+V AAL++R  G  +  V     +       +              
Sbjct: 226 DGHAVCGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVERDF------ 276

Query: 79  VCDTINVSHYVFDYEERF 96
           V  T     +  D  +RF
Sbjct: 277 VAAT-GAKLHTVDAADRF 293


>gi|300776418|ref|ZP_07086276.1| LPS biosynthesis protein WbpG [Chryseobacterium gleum ATCC 35910]
 gi|300501928|gb|EFK33068.1| LPS biosynthesis protein WbpG [Chryseobacterium gleum ATCC 35910]
          Length = 381

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K     V+G+   +++         +    + +       + +
Sbjct: 73  IIGLSGGLDSSYAAYIAKE----VMGIRPLIFHVDAGWNTDKAVGNIEKLI------NGL 122

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           N+  Y  V ++EE     V   F  S  + +             FS L    ++   + +
Sbjct: 123 NLDLYTEVINWEEMKDLQVA--FLKSQISDQDLPQDYAF-----FSALYKFAKKNKINYV 175

Query: 142 ATG 144
            TG
Sbjct: 176 LTG 178


>gi|255573621|ref|XP_002527733.1| GMP synthase, putative [Ricinus communis]
 gi|223532874|gb|EEF34646.1| GMP synthase, putative [Ricinus communis]
          Length = 353

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 31/194 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V+ A+SGGVDS+V A L+ +  G  +  V +     R   + +      +D      
Sbjct: 46  EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYMERERVMETFERD------ 99

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDL-LSVTR 134
               +++     D  E+F +    V+ P       G+  +          F      + +
Sbjct: 100 ----LHLPVTCVDASEQFLSKLKGVVDPEMKRKIIGKEFIS--------IFDAFAHDLEQ 147

Query: 135 QLG---ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +LG   A ++    Y          G  R                +    +     L  P
Sbjct: 148 KLGKKPAYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-----VGGLPKDMKLKLIEP 202

Query: 192 LGDMKKESVRDLAR 205
           L  + K+ VR L R
Sbjct: 203 LKLLFKDEVRQLGR 216


>gi|121292051|gb|ABM53644.1| amidotransferase [Escherichia coli]
 gi|121292077|gb|ABM53656.1| amidotransferase [Escherichia coli]
          Length = 378

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS  A + K      +G+   L++         +    + +       + +
Sbjct: 70  IIGLSGGLDSSYAAYIAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLI------EGL 119

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE      +     S+     P   +  +    FS L    R+     +
Sbjct: 120 GLDLYTEVINWEE------MKDLQLSFLKSGIPDQDLVQDAAF-FSSLYKFARKHKIKHV 172

Query: 142 ATGHYIRSRLYVGDDGKRRR 161
            TG    +      +     
Sbjct: 173 ITGSNFSTECCREPEEWGGY 192


>gi|169630797|ref|YP_001704446.1| GMP synthase [glutamine-hydrolyzing] [Mycobacterium abscessus ATCC
           19977]
 gi|169242764|emb|CAM63792.1| GMP synthase [glutamine-hydrolyzing] [Mycobacterium abscessus]
          Length = 526

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + R + A+SGGVDS+V AAL++R  G  +  V 
Sbjct: 220 EGRALCALSGGVDSAVAAALVQRAIGDRLTCVF 252


>gi|160889493|ref|ZP_02070496.1| hypothetical protein BACUNI_01917 [Bacteroides uniformis ATCC 8492]
 gi|156861010|gb|EDO54441.1| hypothetical protein BACUNI_01917 [Bacteroides uniformis ATCC 8492]
          Length = 388

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 48/215 (22%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ------------D 72
           V +SGG+DSSV++A+ K           +    R  +  K      Q            D
Sbjct: 64  VLLSGGLDSSVISAIAK-----------KYAAKRIETDNKADAWWPQLHSFAVGLKGAPD 112

Query: 73  VYDARRVCDTINVSHYVFDY-EERFRNAV--IVPFASSYA----AGETPLPC---VDCNR 122
           +  AR V   I   H+  +Y  +   +AV  ++ F  +Y        TP+     V  + 
Sbjct: 113 LIKAREVARHIGTVHHEINYTVQEGLDAVRDVIYFIETYDITTVRASTPMYLLARVIKSM 172

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA--- 179
            +K         ++    L        + +  +  ++   +     L  ++S   +    
Sbjct: 173 GIKMVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHLYDCLRANKSLAAWGVEG 232

Query: 180 ----TTQQQLCDL--------RFPLGDMKKESVRD 202
                 ++ L             P  +++K+ VR+
Sbjct: 233 RVPFLDKEFLDVAMRINPAVKMCPGKEIEKKVVRE 267


>gi|315924540|ref|ZP_07920759.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622070|gb|EFV02032.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 237

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS-SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
             D      R+ + +SGG DS +++AA+ +   +  I            +    +   G 
Sbjct: 15  QFDMISPGDRIAIGISGGKDSMALLAAMARYQKFSPIPF-------ELEAITLDAGLEGM 67

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D       C  INV + +       + + I          +   PC  C   ++   L +
Sbjct: 68  DFSPIADYCRRINVPYTI-------KKSAIAKVVFDIRQEK--NPCALC-ARMRRGALHN 117

Query: 132 VTRQLGADVLATGHYI 147
           ++++LG + +A GH+ 
Sbjct: 118 LSKELGCNKIALGHHS 133


>gi|307718690|ref|YP_003874222.1| GMP synthase [Spirochaeta thermophila DSM 6192]
 gi|306532415|gb|ADN01949.1| GMP synthase [Spirochaeta thermophila DSM 6192]
          Length = 517

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 29/193 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC--CAGQDVYDARRVCD 81
           ++ +SGGVDS+VVAALL           L+ +   +              +  +      
Sbjct: 217 LLLISGGVDSTVVAALL-----------LKTFPPEQVHLLYIDTGLMRKNETEEVEANLR 265

Query: 82  TINVS-HYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           T+  S  Y+   EERF +A   V+ P       G+  +            + L   R   
Sbjct: 266 TLGASNLYIVHAEERFLSALKGVVDPEKKRQIIGDVFIQVQ--------EEELRRRRIPD 317

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +  G     +  + +     R  S  +    ++    +  PL  + K
Sbjct: 318 QAFLAQGTLYTDLIESGKGVGNKAKVIKSHHNVR--SPLIERKRKE--GRVIEPLSMLYK 373

Query: 198 ESVRDLAREMGLD 210
           + VR L   +G+ 
Sbjct: 374 DEVRRLGAHLGVP 386


>gi|315230892|ref|YP_004071328.1| hypothetical protein TERMP_01129 [Thermococcus barophilus MP]
 gi|315183920|gb|ADT84105.1| hypothetical protein TERMP_01129 [Thermococcus barophilus MP]
          Length = 225

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M++    SGG DS+       + G+DV  +   +    K+ +          + D +   
Sbjct: 1  MKIATLFSGGKDSTYALYWAMQQGFDVKYL---VSIHSKSEESYMYHVPNIHLTDLQ--A 55

Query: 81 DTINVSHY 88
          + I +   
Sbjct: 56 EAIGIPLI 63


>gi|167762625|ref|ZP_02434752.1| hypothetical protein BACSTE_00982 [Bacteroides stercoris ATCC
           43183]
 gi|167699731|gb|EDS16310.1| hypothetical protein BACSTE_00982 [Bacteroides stercoris ATCC
           43183]
          Length = 253

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 33/136 (24%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  ++++ +SGG DS  +  LL R        + V+     ++  + +  +         
Sbjct: 30  EGDKILIGLSGGKDSLALVELLARRSRILKPRFSVVAAHVVMRNISYQSDTDYL------ 83

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                 R   ++  V          +       F +S    ++P      NR      L 
Sbjct: 84  ------RSYAESQGVPFV------LYETE----FDASTDTRKSPCFLCSWNRR---KALF 124

Query: 131 SVTRQLGADVLATGHY 146
           +V ++ G + +A GH+
Sbjct: 125 TVAKEQGCNKIALGHH 140


>gi|13638101|sp|O52831|GUAA_CORAM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|6705971|dbj|BAA89456.1| GMP synthetase [Corynebacterium ammoniagenes]
          Length = 524

 Score = 43.2 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 220 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 252


>gi|253988810|ref|YP_003040166.1| NAD synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780260|emb|CAQ83421.1| nh(3)-dependent nad+ synthetase [Photorhabdus asymbiotica]
          Length = 540

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS +  A+     G + V  V +                +   + DA+   
Sbjct: 283 VLLGLSGGIDSGLTLAIAVDALGKEYVQAVMM-----------PFRYTSEMSIEDAKEQA 331

Query: 81  DTINVSHYVFDYEERF 96
           D + V   V   E  F
Sbjct: 332 DMLGVEFNVVSIEPMF 347


>gi|169350211|ref|ZP_02867149.1| hypothetical protein CLOSPI_00955 [Clostridium spiroforme DSM 1552]
 gi|169292994|gb|EDS75127.1| hypothetical protein CLOSPI_00955 [Clostridium spiroforme DSM 1552]
          Length = 398

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + ++ MSGG+DS V   L  + G D+  +             + +     D+ D  R 
Sbjct: 176 GGKALLMMSGGIDSPVAGYLTLKRGVDIECIHFA----APPYTNELAREKVLDLVDKLRH 231

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
                +  ++ ++ +  + AV      SYA 
Sbjct: 232 YTHGQIKVHIVNFTKL-QLAVYDHCDESYAM 261


>gi|114267|sp|P17714|ASNS_MESAU RecName: Full=Asparagine synthetase [glutamine-hydrolyzing];
           AltName: Full=Glutamine-dependent asparagine synthetase
 gi|49614|emb|CAA36375.1| unnamed protein product [Mesocricetus auratus]
          Length = 561

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---A 76
           D R+V  +SGG+DSS+VA+ L +           L  ++     +      +D  D   A
Sbjct: 250 DRRIVCLLSGGLDSSLVASSLLKQ----------LKEAQVQYPLQTFAIGMEDSPDLLAA 299

Query: 77  RRVCDTINVSHYVFDYEER 95
           R+V + I   H+   +   
Sbjct: 300 RKVANYIGSEHHEVLFNSE 318


>gi|86132087|ref|ZP_01050683.1| Argininosuccinate synthase [Dokdonia donghaensis MED134]
 gi|85817421|gb|EAQ38601.1| Argininosuccinate synthase [Dokdonia donghaensis MED134]
          Length = 393

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            ++++A SGG+D+S          GY+V  V                    Q++ + ++ 
Sbjct: 2   KKLILAYSGGLDTSYCVKYFTAEMGYEVHAV-----------SVNTGGFTDQEIANNKKK 50

Query: 80  CDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +  + Y   D    F + V+              P  V   R V+  ++    +   
Sbjct: 51  ALALGATSYTNIDAIATFYDTVVKYLIFGNVLKNNSYPLSVSAERIVQAIEIAKFAKAQN 110

Query: 138 ADVLATG 144
           AD +A G
Sbjct: 111 ADAIAHG 117


>gi|115359384|ref|YP_776522.1| NAD synthetase [Burkholderia ambifaria AMMD]
 gi|115284672|gb|ABI90188.1| NH(3)-dependent NAD(+) synthetase [Burkholderia ambifaria AMMD]
          Length = 295

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 63/207 (30%), Gaps = 69/207 (33%)

Query: 24  VVAMSGGVDSSVV---AALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           V+ +SGGVDSS     A L        GYD   + ++L N               D  DA
Sbjct: 62  VLGISGGVDSSTAGRLAQLAVEQLRAGGYDARFIAMRLPN-----------GVQNDEADA 110

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R                           +   A ET    V                 +
Sbjct: 111 QRA-------------------------LAFVRADETFTVDVKP-----------AADAM 134

Query: 137 GADVLATGHY----IRSRLYVGDDGKRRRIMC--------RPMDLERDQ---SYFLFATT 181
            A ++A+GH      +     G+   R R++         R + +  D    S   F T 
Sbjct: 135 LASLVASGHAFETPAQQDFVHGNIKARERMIAQYAVAGARRGIVIGTDHAAESLMGFFTK 194

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG 208
                    PL  + K  VR +AR +G
Sbjct: 195 FGDGGADVLPLAGLSKRRVRAVARALG 221


>gi|229592291|ref|YP_002874410.1| putative transcriptional regulator [Pseudomonas fluorescens
          SBW25]
 gi|259551561|sp|C3JYR8|QUEC_PSEFS RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|229364157|emb|CAY51802.1| putative transcriptional regulatory protein [Pseudomonas
          fluorescens SBW25]
          Length = 224

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R V+ +SGG+DS+ V A+ +  GY     T+        S   G     + +  A RV
Sbjct: 3  QKRAVILLSGGLDSATVVAMAQAQGYSC--YTM--------SFDYGQRHRAE-LNAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARDMGVVEHKVI 63


>gi|221636272|ref|YP_002524148.1| argininosuccinate synthase [Thermomicrobium roseum DSM 5159]
 gi|221157288|gb|ACM06406.1| argininosuccinate synthase [Thermomicrobium roseum DSM 5159]
          Length = 407

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   +K   G +VI VT    +  +     G         +A+ + 
Sbjct: 8   KVVLAYSGGLDTSVILKWIKETYGCEVITVT---ADVGQGEDLSG--------IEAKALA 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              +   YV D +E F      P           Y  G +    +     V       + 
Sbjct: 57  TGAS-KAYVLDLKEEFLTQYAFPVLRSGAVYERKYLLGTSFARPLIAKYQV------EIA 109

Query: 134 RQLGADVLATG 144
           ++ GAD +A G
Sbjct: 110 KREGADAVAHG 120


>gi|224534665|ref|ZP_03675237.1| NAD synthase family protein [Borrelia spielmanii A14S]
 gi|224513913|gb|EEF84235.1| NAD synthase family protein [Borrelia spielmanii A14S]
          Length = 515

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G + V+G+++           +GS      + DA+ +
Sbjct: 259 KVHLGVSGGIDSALVACLACFALGAENVVGISM-----PSKFSSEGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFR 97
              +         ++ F 
Sbjct: 308 SRKLGFKLIEMPIKDLFE 325


>gi|154496412|ref|ZP_02035108.1| hypothetical protein BACCAP_00701 [Bacteroides capillosus ATCC
           29799]
 gi|150274495|gb|EDN01572.1| hypothetical protein BACCAP_00701 [Bacteroides capillosus ATCC
           29799]
          Length = 250

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 64/203 (31%), Gaps = 56/203 (27%)

Query: 20  DMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDA 76
           + +  +A SGG DS   A LL                +     +    S      ++ DA
Sbjct: 10  NPKAALAFSGGTDS---AYLLWAASQ-----------WAQDVKAYYVHSPFQPVFELADA 55

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSY--AAGETPLPCVDCNRTVKFSDLLSVTR 134
           +R+ + +++              V+     S   AA   P  C  C   + F+ L +   
Sbjct: 56  KRLAEELHMPM-----------TVLEADILSVPGAAANGPDRCYHCKTAL-FTLLKNAAL 103

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL-- 192
             G  +L  G          DD   R  M    +L                  +R PL  
Sbjct: 104 ADGYTLLIDG------TNASDDAGDRPGMRALKELA-----------------VRSPLRE 140

Query: 193 GDMKKESVRDLAREMGLDIADKS 215
             + K  VR  +RE GL   DK 
Sbjct: 141 CGVTKTEVRQRSREAGLFTWDKP 163


>gi|148546498|ref|YP_001266600.1| exsB protein [Pseudomonas putida F1]
 gi|189038936|sp|A5VZV6|QUEC_PSEP1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|148510556|gb|ABQ77416.1| exsB protein [Pseudomonas putida F1]
          Length = 224

 Score = 43.2 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ K +GY     T+        S   G     + +  A RV
Sbjct: 3  EKRAVILLSGGLDSATVVAMAKAEGYSC--YTM--------SFDYGQRHRAE-LNAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 AHDLGVVEHKVI 63


>gi|315185780|gb|EFU19546.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta thermophila DSM
           6578]
          Length = 517

 Score = 43.2 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 29/193 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC--CAGQDVYDARRVCD 81
           ++ +SGGVDS+VVAALL           L+ +   +              +  +      
Sbjct: 217 LLLISGGVDSTVVAALL-----------LKTFPPEQVHLLYIDTGLMRKNETEEVEANLR 265

Query: 82  TINVS-HYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           T+  S  Y+   EERF +A   V+ P       G+  +            + L   R   
Sbjct: 266 TLGASNLYIVHAEERFLSALKGVVDPEKKRQIIGDVFIQVQ--------EEELRRRRIPD 317

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              LA G      +  G     +  + +     R  S  +    ++    +  PL  + K
Sbjct: 318 QAFLAQGTLYTDLIESGKGVGNKAKVIKSHHNVR--SPLIERKRKE--GRVIEPLSMLYK 373

Query: 198 ESVRDLAREMGLD 210
           + VR L   +G+ 
Sbjct: 374 DEVRRLGAHLGVP 386


>gi|289772035|ref|ZP_06531413.1| NAD(+) synthase [Streptomyces lividans TK24]
 gi|289702234|gb|EFD69663.1| NAD(+) synthase [Streptomyces lividans TK24]
          Length = 596

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA++     G + V GV++                +G    DA  + 
Sbjct: 340 VLIGLSGGIDSALVASIACDALGAEHVYGVSM-----------PSKYSSGHSRDDAAELA 388

Query: 81  DTINVSHYVFDYEERF 96
               + +     E  F
Sbjct: 389 RRTGLHYRTVSIEPMF 404


>gi|284104806|ref|ZP_06386155.1| NAD+ synthetase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830185|gb|EFC34443.1| NAD+ synthetase [Candidatus Poribacteria sp. WGA-A3]
          Length = 391

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           D  +  +  RV++A+SGG+DS++ A +     G D V GV +
Sbjct: 120 DYVRKNRFQRVLIAVSGGIDSALTAVIAVDALGPDRVTGVFM 161


>gi|254172406|ref|ZP_04879081.1| thiamine biosynthesis protein ThiI [Thermococcus sp. AM4]
 gi|214033335|gb|EEB74162.1| thiamine biosynthesis protein ThiI [Thermococcus sp. AM4]
          Length = 197

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 41/191 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V  +S G+DS V   L+ R   +V+ V  +        + K            +   
Sbjct: 1   MKAVTLLSSGIDSPVAIYLMLRKDVEVVPVHFR---QDSIKEEKVHELWEVLRRYGK--- 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----RQL 136
             ++    V D+ E     V            T   CV C    K+  +L        ++
Sbjct: 55  --LD-ELIVVDFAEEHV-PVFERLKELKKERWT---CVFC----KW-LMLRRACRIGHEV 102

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           GA  + TG  +        D     I+ R  DL                  +  PL  + 
Sbjct: 103 GASTIITGDSLGQVASQTLD--NLLIVSRASDLP-----------------VLRPLIGLD 143

Query: 197 KESVRDLAREM 207
           KE +  +A+E+
Sbjct: 144 KEEIVWIAKEI 154


>gi|196247862|ref|ZP_03146564.1| exsB protein [Geobacillus sp. G11MC16]
 gi|196212646|gb|EDY07403.1| exsB protein [Geobacillus sp. G11MC16]
          Length = 223

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 42/205 (20%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K  ++  VVV  SGG DS+      K+   +V  VT   ++  +  +R+        +  
Sbjct: 2   KMNEEKAVVV-FSGGQDSTTCLFWAKKQFAEVEAVT---FDYGQRHRRE--------IEV 49

Query: 76  ARRVCDTINVSHYVFDYE--------ERFRNAVIVPFASSYAAGETPLPCVDCNR--TVK 125
           A  + D + V H V D             R  +    A     GE P   VD      + 
Sbjct: 50  AASIADELGVRHTVLDMSLLGQLAPNALTRGEI----AIEQKEGELPTTFVDGRNLLFLS 105

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQ 183
           F+ +L   +Q GA  + TG    +      D +   I  +   ++L  D  + ++     
Sbjct: 106 FAAVL--AKQRGARHIVTG-VCETDFSGYPDCRDIFIKSLNVTLNLAMDYPFVIYT---- 158

Query: 184 QLCDLRFPLGDMKKESVRDLAREMG 208
                  PL  + K     LA E+G
Sbjct: 159 -------PLMWLTKAETWKLADELG 176


>gi|78044946|ref|YP_361069.1| argininosuccinate synthase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|119361261|sp|Q3A9W5|ASSY_CARHZ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|77997061|gb|ABB15960.1| argininosuccinate synthase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 401

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   LK + GY+VI +      +      +      + +       
Sbjct: 4   KVVLAYSGGLDTSIIIPWLKENYGYEVIAMV-----ADVGQGEELEPLREKAIKSGAA-- 56

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                  Y+ D +E F    + P   + A  E          R +    L+ +  + GA 
Sbjct: 57  -----KIYIEDVKEEFVRDFVFPMLKAGAVYENKYLLGTSVARPLIAKKLVEIAEKEGAV 111

Query: 140 VLATG 144
            +A G
Sbjct: 112 AVAHG 116


>gi|256788144|ref|ZP_05526575.1| NAD(+) synthase (glutamine-hydrolysing) [Streptomyces lividans
           TK24]
          Length = 589

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA++     G + V GV++                +G    DA  + 
Sbjct: 333 VLIGLSGGIDSALVASIACDALGAEHVYGVSM-----------PSKYSSGHSRDDAAELA 381

Query: 81  DTINVSHYVFDYEERF 96
               + +     E  F
Sbjct: 382 RRTGLHYRTVSIEPMF 397


>gi|242399134|ref|YP_002994558.1| Archaeosine biosynthesis protein queC [Thermococcus sibiricus MM
          739]
 gi|242265527|gb|ACS90209.1| Archaeosine biosynthesis protein queC [Thermococcus sibiricus MM
          739]
          Length = 241

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 12/82 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  R VV  SGG+DS+      K +  +VI +T+  Y S +                A  
Sbjct: 2  KMTRAVVLFSGGLDSTACLYWAKENYDEVIMLTI-NYGSNEEKVINKI---------AEF 51

Query: 79 VCDTINVSHYVF--DYEERFRN 98
              +N+   +   D+ E F  
Sbjct: 52 FSKELNIPLKIIHLDFLEEFSK 73


>gi|183597318|ref|ZP_02958811.1| hypothetical protein PROSTU_00570 [Providencia stuartii ATCC 25827]
 gi|188023340|gb|EDU61380.1| hypothetical protein PROSTU_00570 [Providencia stuartii ATCC 25827]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDARRV 79
            ++V+A SGG+D+S +   LK             Y+  +            +D+    + 
Sbjct: 6   KKIVLAYSGGLDTSAIIPWLKE-----------NYDDCEVVAFVADVGQDREDLVGVEQK 54

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
                    +V D  E F    I P          SY  G +    +     V       
Sbjct: 55  ALQSGASECHVVDLREEFVKEYIYPVLKTGALYEGSYLLGTSMARPIIAKAQV------E 108

Query: 132 VTRQLGADVLATG 144
           +  ++GAD +A G
Sbjct: 109 LALKVGADAVAHG 121


>gi|172064177|ref|YP_001811828.1| NAD+ synthetase [Burkholderia ambifaria MC40-6]
 gi|238692863|sp|B1Z0R0|NADE_BURA4 RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|171996694|gb|ACB67612.1| NAD+ synthetase [Burkholderia ambifaria MC40-6]
          Length = 282

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 63/207 (30%), Gaps = 69/207 (33%)

Query: 24  VVAMSGGVDSSVV---AALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           V+ +SGGVDSS     A L        GYD   + ++L N               D  DA
Sbjct: 49  VLGISGGVDSSTAGRLAQLAVEQLRAGGYDARFIAMRLPN-----------GVQNDEADA 97

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R                           +   A ET    V                 +
Sbjct: 98  QRA-------------------------LAFVRADETFTVDVKP-----------AADAM 121

Query: 137 GADVLATGHY----IRSRLYVGDDGKRRRIMC--------RPMDLERDQ---SYFLFATT 181
            A ++A+GH      +     G+   R R++         R + +  D    S   F T 
Sbjct: 122 LASLVASGHAFETPAQQDFVHGNIKARERMIAQYAVAGARRGIVIGTDHAAESLMGFFTK 181

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG 208
                    PL  + K  VR +AR +G
Sbjct: 182 FGDGGADVLPLAGLSKRRVRAVARALG 208


>gi|149198953|ref|ZP_01875994.1| argininosuccinate synthase [Lentisphaera araneosa HTCC2155]
 gi|149137948|gb|EDM26360.1| argininosuccinate synthase [Lentisphaera araneosa HTCC2155]
          Length = 411

 Score = 43.2 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 25/142 (17%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           L K+ K  ++ + +SGG+DS  V   L  +G DV+                      +D+
Sbjct: 2   LLKDLKGKKIGICVSGGLDSKTVTKRLMEEGLDVVCF-----------SADLGQPDEKDI 50

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCN-----RTVKF 126
            D  +  +      Y+ D ++            +++Y  G         N     R V  
Sbjct: 51  NDIVKKMEPCGAPTYIVDVKDDMAEICFETIKASATYDGG-------YWNTTGIARAVTV 103

Query: 127 SDLLSVTRQLGADVLATGHYIR 148
             ++   ++ G DVL  G   R
Sbjct: 104 RGIIREMQKHGVDVLCHGATGR 125


>gi|294155479|ref|YP_003559863.1| thiamine biosynthesis/tRNA modification protein ThiI [Mycoplasma
           crocodyli MP145]
 gi|291599944|gb|ADE19440.1| thiamine biosynthesis/tRNA modification protein ThiI [Mycoplasma
           crocodyli MP145]
          Length = 383

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDV 47
           +++  MSGG+DS V A LL + G  V
Sbjct: 166 KILHLMSGGIDSPVAAFLLMKRGLKV 191


>gi|225551664|ref|ZP_03772608.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1]
 gi|225371691|gb|EEH01117.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1]
          Length = 440

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRK 59
           + +  + NSLD +      RV+VA SGG DS   A LL    Y   +VI           
Sbjct: 12  IDKFYKKNSLDKN------RVIVAFSGGADS--TALLLNLKYYLSNNVIAFYF------- 56

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A   +      Q++   +  CD  N++  +       +   I   + S   G +      
Sbjct: 57  AHFIRSDNEQNQEIEHVKGFCDLYNIALQI-------KKCDIDIKSESARLGVSIEELA- 108

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH 145
             R  ++  L +  ++ GA+ +A  H
Sbjct: 109 --RKFRYIALENALKENGANYIALAH 132


>gi|224532919|ref|ZP_03673530.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23]
 gi|224512157|gb|EEF82547.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23]
          Length = 440

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRK 59
           + +  + NSLD +      RV+VA SGG DS   A LL    Y   +VI           
Sbjct: 12  IDKFYKKNSLDKN------RVIVAFSGGADS--TALLLNLKYYLSNNVIAFYF------- 56

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A   +      Q++   +  CD  N++  +       +   I   + S   G +      
Sbjct: 57  AHFIRSDNEQNQEIEHVKGFCDLYNIALQI-------KKCDIDIKSESARLGVSIEELA- 108

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH 145
             R  ++  L +  ++ GA+ +A  H
Sbjct: 109 --RKFRYIALENALKENGANYIALAH 132


>gi|195942001|ref|ZP_03087383.1| hypothetical protein Bbur8_03899 [Borrelia burgdorferi 80a]
 gi|221217597|ref|ZP_03589066.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a]
 gi|224533444|ref|ZP_03674037.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a]
 gi|221192543|gb|EEE18761.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a]
 gi|224513406|gb|EEF83764.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 440

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRK 59
           + +  + NSLD +      RV+VA SGG DS   A LL    Y   +VI           
Sbjct: 12  IDKFYKKNSLDKN------RVIVAFSGGADS--TALLLNLKYYLSNNVIAFYF------- 56

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A   +      Q++   +  CD  N++  +       +   I   + S   G +      
Sbjct: 57  AHFIRSDNEQNQEIEHVKGFCDLYNIALQI-------KKCDIDIKSESARLGVSIEELA- 108

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH 145
             R  ++  L +  ++ GA+ +A  H
Sbjct: 109 --RKFRYIALENALKENGANYIALAH 132


>gi|225550286|ref|ZP_03771245.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a]
 gi|225369154|gb|EEG98608.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a]
          Length = 440

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRK 59
           + +  + NSLD +      RV+VA SGG DS   A LL    Y   +VI           
Sbjct: 12  IDKFYKKNSLDKN------RVIVAFSGGADS--TALLLNLKYYLSNNVIAFYF------- 56

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A   +      Q++   +  CD  N++  +       +   I   + S   G +      
Sbjct: 57  AHFIRSDNEQNQEIEHVKGFCDLYNIALQI-------KKCDIDIKSESARLGVSIEELA- 108

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH 145
             R  ++  L +  ++ GA+ +A  H
Sbjct: 109 --RKFRYIALENALKENGANYIALAH 132


>gi|15595133|ref|NP_212922.1| hypothetical protein BB0788 [Borrelia burgdorferi B31]
 gi|216264898|ref|ZP_03436890.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a]
 gi|218249437|ref|YP_002375287.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7]
 gi|223889299|ref|ZP_03623886.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b]
 gi|225549361|ref|ZP_03770333.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a]
 gi|226321219|ref|ZP_03796753.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805]
 gi|226321253|ref|ZP_03796781.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26]
 gi|6136576|sp|O51728|TILS_BORBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695536|sp|B7J0N4|TILS_BORBZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2688713|gb|AAC67121.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|215981371|gb|EEC22178.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a]
 gi|218164625|gb|ACK74686.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7]
 gi|223885220|gb|EEF56323.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b]
 gi|225369989|gb|EEG99430.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a]
 gi|226233285|gb|EEH32036.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26]
 gi|226233373|gb|EEH32120.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805]
 gi|312147795|gb|ADQ30454.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi JD1]
 gi|312149540|gb|ADQ29611.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi N40]
          Length = 440

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRK 59
           + +  + NSLD +      RV+VA SGG DS   A LL    Y   +VI           
Sbjct: 12  IDKFYKKNSLDKN------RVIVAFSGGADS--TALLLNLKYYLSNNVIAFYF------- 56

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
           A   +      Q++   +  CD  N++  +       +   I   + S   G +      
Sbjct: 57  AHFIRSDNEQNQEIEHVKGFCDLYNIALQI-------KKCDIDIKSESARLGVSIEELA- 108

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH 145
             R  ++  L +  ++ GA+ +A  H
Sbjct: 109 --RKFRYIALENALKENGANYIALAH 132


>gi|89097394|ref|ZP_01170283.1| aluminum resistance protein [Bacillus sp. NRRL B-14911]
 gi|89087690|gb|EAR66802.1| aluminum resistance protein [Bacillus sp. NRRL B-14911]
          Length = 218

 Score = 43.2 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ + +V  SGG DS+      K++  +V  VT   ++  +    +  C        ARR
Sbjct: 2  KNEKAIVVFSGGQDSTTCLFWAKKNFKEVEAVT---FDYGQRHIAELEC--------ARR 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H+V D  
Sbjct: 51 IAADLAIQHHVLDMS 65


>gi|330808305|ref|YP_004352767.1| Putative LPS biosynthesis protein WbpG [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376413|gb|AEA67763.1| Putative LPS biosynthesis protein WbpG [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 382

 Score = 43.2 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 19/123 (15%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DSS +A + K      +G+   L++         +    + + D       +
Sbjct: 74  IIGLSGGLDSSYLAYIAKEK----MGLRPLLFHVDAGWNTDQAVGNIEKLVDG------L 123

Query: 84  NVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +  Y  V ++EE     V      ++   + P   +  +    FS L    +      +
Sbjct: 124 GLELYTDVINWEEMKSLQV------AFLKAQVPDQDIPQDTAF-FSGLYKFAKANKIKYV 176

Query: 142 ATG 144
            TG
Sbjct: 177 LTG 179


>gi|322693043|gb|EFY84919.1| GMP synthase [Metarhizium acridum CQMa 102]
          Length = 206

 Score = 43.2 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 23 VVVAMSGGVDSSVVAALLKRD 43
          V+ A+SGGVDSSV A L+K  
Sbjct: 22 VIGAVSGGVDSSVAAKLMKEA 42


>gi|296119260|ref|ZP_06837828.1| GMP synthase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967652|gb|EFG80909.1| GMP synthase [Corynebacterium ammoniagenes DSM 20306]
          Length = 512

 Score = 43.2 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           + R +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 208 EGRAICGLSGGVDSAVAAALVQRAIGDRLTCVF 240


>gi|197302373|ref|ZP_03167430.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC
           29176]
 gi|197298552|gb|EDY33095.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC
           29176]
          Length = 498

 Score = 43.2 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +  R+V  +SGG DS     LL       K+ G++VI   +  +  R  +  +       
Sbjct: 21  RGDRIVTGVSGGADS---VCLLFVLCELRKKLGFEVIVCHV-NHQLRAEAAEQ------- 69

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           D    + +C  ++V   +      F   V         A        +  R V+ +   +
Sbjct: 70  DEAYVKELCRKLDVPCRI------FHENV------ELIAKNGKKSLEEAGRIVRSNAFET 117

Query: 132 VTRQLGADVLATGHY 146
           V R+ GA+ +AT H+
Sbjct: 118 VCRESGANKIATAHH 132


>gi|118594731|ref|ZP_01552078.1| argininosuccinate synthase [Methylophilales bacterium HTCC2181]
 gi|118440509|gb|EAV47136.1| argininosuccinate synthase [Methylophilales bacterium HTCC2181]
          Length = 405

 Score = 43.2 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++V+A SGG+D+SV+   L+++ Y+   VT                   +++  AR    
Sbjct: 7   KIVLAYSGGLDTSVILKWLQQE-YNCEVVTF-----------TADLGQKEEIEPARAKAT 54

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +  V   ++ D  E F    + P           Y  G +    +   R      L+ + 
Sbjct: 55  SAGVKEIFIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKR------LVEIA 108

Query: 134 RQLGADVLATG 144
            Q G++ ++ G
Sbjct: 109 HQTGSNTISHG 119


>gi|82703823|ref|YP_413389.1| ExsB [Nitrosospira multiformis ATCC 25196]
 gi|110816235|sp|Q2Y5H4|QUEC_NITMU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|82411888|gb|ABB75997.1| preQ(0) biosynthesis protein QueC [Nitrosospira multiformis ATCC
          25196]
          Length = 232

 Score = 43.2 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
          + VV +SGG+DS+ V A+ ++ GY+   +
Sbjct: 3  KAVVLLSGGLDSATVLAIARQQGYECYAL 31


>gi|300710946|ref|YP_003736760.1| thiamine biosynthesis protein ThiI [Halalkalicoccus jeotgali B3]
 gi|299124629|gb|ADJ14968.1| thiamine biosynthesis protein ThiI [Halalkalicoccus jeotgali B3]
          Length = 388

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 34/186 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V  +SGG+DS V A  L + G  VI +              G     + V  AR +    
Sbjct: 185 VALLSGGIDSPVAAWELMKRGAPVIPLYF------DFEAYGGVDHVARAVESARTLAGY- 237

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQLGADVLA 142
              ++  D       A    F      G  P   +   R + +  +   + R+ GA  + 
Sbjct: 238 -APNHTRDLRIAPAGAAAARFVE----GIGPTRMLSLRRFMLRVGE--RLARETGAVGIV 290

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  I           ++           D    +      +      PL    K+ +  
Sbjct: 291 TGEAI----------GQKSSQTSANLAVTD---AVAELPVHR------PLLTRDKQEIIA 331

Query: 203 LAREMG 208
            ARE+G
Sbjct: 332 RAREIG 337


>gi|295696590|ref|YP_003589828.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Bacillus tusciae DSM 2912]
 gi|295412192|gb|ADG06684.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Bacillus tusciae DSM 2912]
          Length = 602

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 54/151 (35%), Gaps = 38/151 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD----GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           RVV+A SGGVDS+    LLK      G D V+ VT                   ++ ++A
Sbjct: 484 RVVIAFSGGVDST---FLLKAALEALGPDRVLAVT-----------ADSETYPERERWEA 529

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-PCVDCNRTVKFSDLLSVTRQ 135
             +   +   H +    E             Y   E P   C  C + + FS L+ + +Q
Sbjct: 530 VELARELGSPHLLIQARELE--------IPGY--AENPADRCYFCKQEL-FSHLIPLAKQ 578

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRP 166
            G D +  G          DD    R   RP
Sbjct: 579 KGYDHVIFGAIA-------DDLGDHRPGLRP 602


>gi|283953972|ref|ZP_06371501.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794577|gb|EFC33317.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni 414]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|283956079|ref|ZP_06373566.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792399|gb|EFC31181.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|205355515|ref|ZP_03222286.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346749|gb|EDZ33381.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|157414941|ref|YP_001482197.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047098|sp|A8FL83|ASSY_CAMJ8 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157385905|gb|ABV52220.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747580|gb|ADN90850.1| Argininosuccinate synthase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931862|gb|EFV10817.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni 327]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|148926641|ref|ZP_01810322.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845160|gb|EDK22255.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|153952360|ref|YP_001398379.1| argininosuccinate synthase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166219958|sp|A7H4E9|ASSY_CAMJD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|152939806|gb|ABS44547.1| argininosuccinate synthase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|15643833|ref|NP_228881.1| hypothetical protein TM1075 [Thermotoga maritima MSB8]
 gi|4981620|gb|AAD36152.1|AE001768_1 hypothetical protein TM_1075 [Thermotoga maritima MSB8]
          Length = 303

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 52/203 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
           KD ++ VA SGG DSS+VA L K          + L   R    +         +     
Sbjct: 2   KDGKLYVAFSGGKDSSLVAILAK----------MALGEERVELVTVDWSPYTYERSREIV 51

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R   +   + H       R +  V       +  G +   C  C R VK   +    +  
Sbjct: 52  RNFAEKHGLKHTFIP-SNRMQEKV-------WKHGPS---CNACTRDVKTVLVKRYAQG- 99

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              ++A+G           D   +  +                        +  PL  + 
Sbjct: 100 --HLVASGANAS-------DSWGKTGLK-------------------VFDGVYSPLCRVG 131

Query: 197 KESVRDLAREMGLDIADKSDSQD 219
           KE + ++ + +GL++    +S  
Sbjct: 132 KEEINEMLKFLGLEVKKIGESAG 154


>gi|57236975|ref|YP_178776.1| argininosuccinate synthase [Campylobacter jejuni RM1221]
 gi|61211373|sp|Q5HVA9|ASSY_CAMJR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|57165779|gb|AAW34558.1| argininosuccinate synthase [Campylobacter jejuni RM1221]
 gi|315058080|gb|ADT72409.1| Argininosuccinate synthase [Campylobacter jejuni subsp. jejuni S3]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|88597140|ref|ZP_01100376.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190829|gb|EAQ94802.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|86151608|ref|ZP_01069822.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153213|ref|ZP_01071417.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613552|ref|YP_001000365.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005311|ref|ZP_02271069.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315124174|ref|YP_004066178.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|166219959|sp|A1VZ24|ASSY_CAMJJ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|85841237|gb|EAQ58485.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842939|gb|EAQ60150.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249480|gb|EAQ72440.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|284925923|gb|ADC28275.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315017896|gb|ADT65989.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|86149847|ref|ZP_01068076.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218562310|ref|YP_002344089.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|30172970|sp|Q9PHK7|ASSY_CAMJE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|85839665|gb|EAQ56925.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112360016|emb|CAL34806.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315926782|gb|EFV06156.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929329|gb|EFV08537.1| argininosuccinate synthase [Campylobacter jejuni subsp. jejuni 305]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y+   VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YNCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHY---VFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
            ++ +      + D  + F    + P           Y  G +    +            
Sbjct: 54  LSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKTQ------A 107

Query: 131 SVTRQLGADVLATG 144
            +  Q GAD ++ G
Sbjct: 108 QIALQTGADAVSHG 121


>gi|330936707|gb|EGH40895.1| ExsB [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 229

 Score = 43.2 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY  +  T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGY--VCYTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 AGDLGAVEHKVI 68


>gi|304387316|ref|ZP_07369509.1| NAD+ synthetase [Neisseria meningitidis ATCC 13091]
 gi|304338699|gb|EFM04816.1| NAD+ synthetase [Neisseria meningitidis ATCC 13091]
          Length = 273

 Score = 43.2 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRPTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+         ++       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGAHQTAFDSQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|189039054|sp|A4ILN7|QUEC_GEOTN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 221

 Score = 43.2 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 67/197 (34%), Gaps = 37/197 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV  SGG DS+      K+   +V  VT   ++  +  +R+        +  A  + D
Sbjct: 5   KAVVVFSGGQDSTTCLFWAKKQFAEVEAVT---FDYGQRHRRE--------IEVAASIAD 53

Query: 82  TINVSHYVFDYE--------ERFRNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLS 131
            + V H V D             R  +    A     GE P   VD      + F+ +L 
Sbjct: 54  ELGVRHTVLDMSLLGQLAPNALTRGEI----AIEQKEGELPTTFVDGRNLLFLSFAAVL- 108

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
             +Q GA  + TG           D       CR + ++        A     +     P
Sbjct: 109 -AKQRGARHIVTG-------VCETDFSGYPD-CRDIFIKSLNVTLNLAMDYPFVIHT--P 157

Query: 192 LGDMKKESVRDLAREMG 208
           L  + K     LA E+G
Sbjct: 158 LMWLTKAETWKLADELG 174


>gi|261191592|ref|XP_002622204.1| GMP synthase subunit B [Ajellomyces dermatitidis SLH14081]
 gi|239589970|gb|EEQ72613.1| GMP synthase subunit B [Ajellomyces dermatitidis SLH14081]
 gi|239612622|gb|EEQ89609.1| GMP synthase subunit B [Ajellomyces dermatitidis ER-3]
 gi|327356872|gb|EGE85729.1| GMP synthase subunit B [Ajellomyces dermatitidis ATCC 18188]
          Length = 543

 Score = 43.2 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 47/209 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L+++     IG      L ++      + +          
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMQKA----IGNRFHAVLVDNGVLRLNEAAIVKET----- 284

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +   + V+  V D  ERF +            G T  P  +  R V  +  + V    
Sbjct: 285 --LTKHLGVNLTVVDASERFLSK---------LKGITDDP--EKKRKVIGNTFIEV---- 327

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMD--------LERDQSYFL-------FATT 181
                     I +      +      + +             +  S  +           
Sbjct: 328 ---FQEEAKKIAAAAQGSPNEGEIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLE 384

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD 210
              L  L  PL ++ K+ VR+L +++G+ 
Sbjct: 385 GMHL-KLIEPLRELFKDEVRELGKQLGIP 412


>gi|227825141|ref|ZP_03989973.1| argininosuccinate synthase [Acidaminococcus sp. D21]
 gi|226905640|gb|EEH91558.1| argininosuccinate synthase [Acidaminococcus sp. D21]
          Length = 407

 Score = 43.2 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 47/141 (33%), Gaps = 29/141 (20%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAG 70
           + K  +  +VV+A SGG+D+SV+   LK + Y   +VI VT  L      S         
Sbjct: 1   MKKKDEIKKVVLAYSGGLDTSVIIPWLKEN-YNNCEVITVTADLGQGDDMSFVHDKALKS 59

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRT 123
                            YV D  + F      P           Y  G +        R 
Sbjct: 60  GASKA------------YVLDLRDEFLRDYAWPMVKSGAVYEKKYLLGTSIA------RP 101

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           V    L+ V  +  AD +  G
Sbjct: 102 VIAKHLVEVALKENADAICHG 122


>gi|257058179|ref|YP_003136067.1| NAD synthetase [Cyanothece sp. PCC 8802]
 gi|256588345|gb|ACU99231.1| NAD+ synthetase [Cyanothece sp. PCC 8802]
          Length = 561

 Score = 43.2 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DSS+VAA+     G D V+G+ +                +   + DA  +
Sbjct: 305 KAVLGLSGGIDSSLVAAIATEALGKDNVLGLLM-----------PSPFSSEHSITDAEAL 353

Query: 80  CDTINVSHYVFDYEE 94
              + ++ Y F  E+
Sbjct: 354 VKNLGINSYKFPIED 368


>gi|218245153|ref|YP_002370524.1| NAD synthetase [Cyanothece sp. PCC 8801]
 gi|218165631|gb|ACK64368.1| NAD+ synthetase [Cyanothece sp. PCC 8801]
          Length = 561

 Score = 43.2 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DSS+VAA+     G D V+G+ +                +   + DA  +
Sbjct: 305 KAVLGLSGGIDSSLVAAIATEALGKDNVLGLLM-----------PSPFSSEHSITDAEAL 353

Query: 80  CDTINVSHYVFDYEE 94
              + ++ Y F  E+
Sbjct: 354 VKNLGINSYKFPIED 368


>gi|331654850|ref|ZP_08355850.1| protein YhdH [Escherichia coli M718]
 gi|331048232|gb|EGI20309.1| protein YhdH [Escherichia coli M718]
          Length = 324

 Score = 43.2 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 17  NPKDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGV 50
            P+D  +VV   SGGV S+VVA LL + GY V+ V
Sbjct: 144 RPQDGEIVVTGASGGVGSTVVA-LLHKLGYQVVAV 177


>gi|262306097|gb|ACY45641.1| gln amidotransferase [Pedetontus saltator]
          Length = 198

 Score = 43.2 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQL 54
          + +V++ +SGGVDS+V  ALL +   +  VI V +  
Sbjct: 43 NSKVLLLVSGGVDSTVCGALLHKALPEDQVIAVHIDN 79


>gi|66044667|ref|YP_234508.1| ExsB [Pseudomonas syringae pv. syringae B728a]
 gi|302187147|ref|ZP_07263820.1| ExsB [Pseudomonas syringae pv. syringae 642]
 gi|75502945|sp|Q4ZWK2|QUEC_PSEU2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|63255374|gb|AAY36470.1| ExsB [Pseudomonas syringae pv. syringae B728a]
 gi|330968881|gb|EGH68947.1| ExsB [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330975317|gb|EGH75383.1| ExsB [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score = 43.2 bits (101), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY  +  T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGY--VCYTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 AGDLGAVEHKVI 68


>gi|309973119|gb|ADO96320.1| Thiamine biosynthesis protein ThiI [Haemophilus influenzae R2846]
          Length = 485

 Score = 43.2 bits (101), Expect = 0.080,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|219684272|ref|ZP_03539216.1| NAD+ synthetase [Borrelia garinii PBr]
 gi|219672261|gb|EED29314.1| NAD+ synthetase [Borrelia garinii PBr]
          Length = 512

 Score = 43.2 bits (101), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V + +SGG+DS++VA L     G + V+G+++           KGS      + DA+ +
Sbjct: 259 KVHLGISGGIDSALVACLACFALGDENVVGISM-----PSKFSSKGS------ISDAKEL 307

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
              +         ++ F   V   F   +
Sbjct: 308 SRKLGFKLIEMPIKDLF--EVSSRFLEGH 334


>gi|315636122|ref|ZP_07891376.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
 gi|315479483|gb|EFU70162.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
          Length = 373

 Score = 43.2 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 26/150 (17%)

Query: 13  DLDKNPKDMRV--VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCA 69
            + ++ K+ +   ++ +SGGVDS+ +A L+   G   + V +   +NS  A         
Sbjct: 59  QIKQDGKNKKYDCILGLSGGVDSTYLAHLVVELGLRPLVVHIDTGWNSEIA--------- 109

Query: 70  GQDVYDARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
              V +   V + +N+    +V D+EE      +     ++     P   +  +    F 
Sbjct: 110 ---VQNIENVVNILNLDLHTHVIDWEE------MKDLQLAFFKASIPDCDIPQDHV--FP 158

Query: 128 DLLSV-TRQLGADVLATGHYIRSRLYVGDD 156
            LL+   +Q     + +GH + +   +  +
Sbjct: 159 ALLNKIAKQNKIKHIISGHNVVTEYILPRN 188


>gi|255564579|ref|XP_002523285.1| GMP synthase, putative [Ricinus communis]
 gi|223537498|gb|EEF39124.1| GMP synthase, putative [Ricinus communis]
          Length = 534

 Score = 43.2 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 37/203 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +  V+ A+SGGVDS+V A L+ +  G  +  V     ++     R+          D  
Sbjct: 226 HEDHVICALSGGVDSTVAATLVHKAIGDRLHCVF---VDNGLLRYRERERVMEAFERD-- 280

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTV-KFSDL-LSV 132
                +++     D  E+F +    V+ P              +  N  +  F      +
Sbjct: 281 -----LHLPVTCVDASEKFLSKLKGVVDPEMKR---------KIIGNLFITIFDAFAHDL 326

Query: 133 TRQLGAD--VLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
            ++LG     L  G      +        G+      +           +    +     
Sbjct: 327 EQKLGKKPAFLVQGTLCPDVIESCPPPGSGRTHSHTIKSHHC-------VGGLPKDMKLK 379

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR L R M + 
Sbjct: 380 LIEPLKLLFKDEVRQLGRMMNVP 402


>gi|88603430|ref|YP_503608.1| thiamine biosynthesis protein [Methanospirillum hungatei JF-1]
 gi|88188892|gb|ABD41889.1| thiamine biosynthesis protein [Methanospirillum hungatei JF-1]
          Length = 369

 Score = 43.2 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 35/188 (18%)

Query: 24  VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VA+ SGG+DS V   ++ + G  +  V +++      S  + +    + +   +     
Sbjct: 171 LVALHSGGIDSPVAMYMMMKRGTILHPVYVKIAPFHDDSSEERAHLIVEHLRKYQP---- 226

Query: 83  INVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            +++  V D    +  R  +       YA       CV C R + +       R +GA  
Sbjct: 227 -DLTLEVIDDGHVYATRMELKKRDLEKYA-------CVLCKRHL-YRIAEQKARAIGAKG 277

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           + TG  +        D      +    D      Y               PL    KE  
Sbjct: 278 IVTGESLAQVASQTLDN-----LYVLDDAVSMPVYR--------------PLIGFDKEET 318

Query: 201 RDLAREMG 208
             +A+++G
Sbjct: 319 IAVAKKIG 326


>gi|55378863|ref|YP_136713.1| succinoglycan biosynthesis ExsB protein [Haloarcula marismortui
          ATCC 43049]
 gi|74517585|sp|Q5V0E6|QUEC_HALMA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|55231588|gb|AAV47007.1| succinoglycan biosynthesis ExsB protein [Haloarcula marismortui
          ATCC 43049]
          Length = 232

 Score = 43.2 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          D R VV  SGG+DS+  A   +  GYD   + L L+ S   +           + D    
Sbjct: 4  DTRAVVLASGGMDSATAAYEAQTRGYD--HLYL-LHTSYGQNTEDREYECASALADHVDA 60

Query: 80 CDTINVS 86
           D ++V 
Sbjct: 61 ADFLHVE 67


>gi|325266958|ref|ZP_08133629.1| NAD+ synthetase [Kingella denitrificans ATCC 33394]
 gi|324981699|gb|EGC17340.1| NAD+ synthetase [Kingella denitrificans ATCC 33394]
          Length = 266

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+VV+ L  R G DV+ + + +        R            A       
Sbjct: 29 VVGVSGGIDSAVVSTLCARTGLDVLCLNMPIRQKPDQFDRAAEHIYHLRRQYA------- 81

Query: 84 NVSHYVFDYEERFRN 98
          NV     D    F  
Sbjct: 82 NVRAQTVDLTPTFEQ 96


>gi|296237834|ref|XP_002763910.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Callithrix
           jacchus]
          Length = 194

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDV--IGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V V  SGG DS+V+A +L+     V  +G++LQL     A            +   RR  
Sbjct: 54  VAVGASGGKDSTVLAHVLREL---VPRLGISLQL----VAVDEGIGGYRDAALAAVRRQA 106

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
               +   V  YE+ F    +   A S A +G +   C  C   ++   L    R++GA 
Sbjct: 107 ARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCG-VLRRRALEEGARRVGAT 165

Query: 140 VLATGHYIRSRLYVGDDGKRRRI 162
            + TG   RS      +   R  
Sbjct: 166 HIVTGERRRSHGAACSEAVGRMH 188


>gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 509

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 40/211 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVV----AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
               +V+V +SGG DS V        L+++      +  +L  S      +    A +D 
Sbjct: 16  KSGDKVLVGVSGGPDS-VALLHVLYELRQE------LQFKLVVSHLNHGFRDK-SAEEDA 67

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              +++ + + +   ++D     +  V     + Y       P     R  ++       
Sbjct: 68  DFVKKLAEDLELP-IIYD-----KWQVKDY-INYYKL----SPQQGA-RIQRYKFFEQAA 115

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD-----QSYFLFATTQQQLCDL 188
           +  GA  LA GH+I       DD      +              Q  F+       L  L
Sbjct: 116 KDFGATKLALGHHI-------DDQVETFFLRLIRGAGTQGLSGMQ--FIRKLNNDLL--L 164

Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
             PL ++ K  +++  +   L       +Q+
Sbjct: 165 IRPLLEVSKSEIKEYLQTNKLKYKIDPTNQE 195


>gi|150400268|ref|YP_001324035.1| putative ATP binding-like protein [Methanococcus vannielii SB]
 gi|150012971|gb|ABR55423.1| putative ATP binding related protein [Methanococcus vannielii SB]
          Length = 295

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 37/175 (21%)

Query: 9   LNSLDLDKNPKDM-----------RV-------VVAMSGGVDSSVVAALLKRDGYDVIGV 50
           +N+L   +N ++M           R+       ++  SGG DS V   LL          
Sbjct: 42  MNALKFPRNFEEMEKEVTEYLDELRIKNNKYNCILGFSGGKDSVVALYLLVN-------- 93

Query: 51  TLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
             +L              A + + + + +     V   V +            F  + + 
Sbjct: 94  --KLRIRPLCVTIDNGYLAEEAILNCKNITKHFGVDWLVIN------KDFTKFFKETISK 145

Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
           GE+  PC  C+  +   ++    RQ   + + TGH +        + K+   M R
Sbjct: 146 GES--PCRICSS-MNMHEIWQFARQTNINTIVTGHELPFGTTAIREMKKNIKMLR 197


>gi|325958300|ref|YP_004289766.1| Queuosine synthesis-like protein [Methanobacterium sp. AL-21]
 gi|325329732|gb|ADZ08794.1| Queuosine synthesis-like protein [Methanobacterium sp. AL-21]
          Length = 198

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 39/178 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+  V  SGG DSS++A +L + GYDV  VT              +         A    
Sbjct: 1   MKACVLYSGGKDSSLMAFILNKLGYDVELVT-------------VNYGIYPSWKPAAESA 47

Query: 81  DTINVSHYVFDY-EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL--- 136
             +N +H V +   +  R+AV           +T L     N  +    L     +L   
Sbjct: 48  SNLNFNHRVMNADSDTMRSAV-----------QTILSDGFPNNGIN--QLHKYALELVAK 94

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF----LFATTQQQLCDLRF 190
             DV+A G     R+   +  +      R  +   +  Y         +   L    F
Sbjct: 95  EYDVVADGTRRDDRIPKLNMNE-----VRSFEDRNNVEYINLGGFGHKSMNHLSKTLF 147


>gi|317479990|ref|ZP_07939105.1| asparagine synthase [Bacteroides sp. 4_1_36]
 gi|316903935|gb|EFV25774.1| asparagine synthase [Bacteroides sp. 4_1_36]
          Length = 575

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 48/215 (22%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ------------D 72
           V +SGG+DSSV++A+ K           +    R  +  K      Q            D
Sbjct: 251 VLLSGGLDSSVISAIAK-----------KYAAKRIETDNKADAWWPQLHSFAVGLKGAPD 299

Query: 73  VYDARRVCDTINVSHYVFDY-EERFRNAV--IVPFASSYA----AGETPLPC---VDCNR 122
           +  AR V   I   H+  +Y  +   +AV  ++ F  +Y        TP+     V  + 
Sbjct: 300 LIKAREVARHIGTVHHEINYTVQEGLDAVRDVIYFIETYDITTVRASTPMYLLARVIKSM 359

Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA--- 179
            +K         ++    L        + +  +  ++   +     L  ++S   +    
Sbjct: 360 GIKMVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHLYDCLRANKSLAAWGVEG 419

Query: 180 ----TTQQQLCDL--------RFPLGDMKKESVRD 202
                 ++ L             P  +++K+ VR+
Sbjct: 420 RVPFLDKEFLDVAMRINPAVKMCPGKEIEKKVVRE 454


>gi|166064263|gb|ABY79062.1| NAD(+) synthase [endosymbiont of Ridgeia piscesae]
          Length = 553

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++++ MSGG+DS++VA +     G D +   +                +   + DA+ + 
Sbjct: 287 KILLGMSGGIDSAIVATIATDALGADNVRCVM----------LPSEYTSEDSLNDAKEIA 336

Query: 81  DTINVSHYVFDYEE 94
             +   +      E
Sbjct: 337 QNLGCRYDFVPISE 350


>gi|255525615|ref|ZP_05392549.1| exsB protein [Clostridium carboxidivorans P7]
 gi|296185502|ref|ZP_06853912.1| ExsB protein [Clostridium carboxidivorans P7]
 gi|255510705|gb|EET87011.1| exsB protein [Clostridium carboxidivorans P7]
 gi|296050336|gb|EFG89760.1| ExsB protein [Clostridium carboxidivorans P7]
          Length = 222

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  VVV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAVVV-FSGGQDSTTCLFWAKKKFKEVIAVS---FDYNQKHKLELEC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   NV H++ D 
Sbjct: 50 SICKKYNVEHHILDL 64


>gi|261417363|ref|YP_003251046.1| GMP synthase, small subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373819|gb|ACX76564.1| GMP synthase, small subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326656|gb|ADL25857.1| GMP synthase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 611

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR-DGYD-VIGVT-----LQLYNSRKASKR-KGSCCAG 70
           KD +V + +SGGVDS+V   LL R  G + V+G+      ++L  S+K            
Sbjct: 217 KDRKVFLLVSGGVDSTVAFVLLNRVLGPEKVLGLHVDNGMMRLGESQKIMDFLTKEGMNN 276

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
             + DA +                         F +    G T     +  R +   + L
Sbjct: 277 LKIRDASK------------------------HFLAK-LKGVT---APETKRGIIGKEFL 308

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---- 186
           +V  +     +A  +   +   +         +        D+        Q+ L     
Sbjct: 309 TVKDE----EMAKLNLDPNEWMMAQGTIYPDTIESGGTKNADKIKTHHNRVQEVLDLMEK 364

Query: 187 -DLRFPLGDMKKESVRDLAREMGLD 210
             +  PL D+ K+ VR L  E+G+ 
Sbjct: 365 GLVLEPLADLYKDEVRALGEELGIP 389


>gi|145641596|ref|ZP_01797173.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae R3021]
 gi|145273643|gb|EDK13512.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 22.4-21]
          Length = 485

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|126724772|ref|ZP_01740615.1| NAD synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126705936|gb|EBA05026.1| NAD synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 552

 Score = 43.2 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ MSGG+DS++VA +     G + +   +                +   + DA + 
Sbjct: 285 KKVLLGMSGGIDSALVATIAVDALGPENVRCVM----------LPSEYTSSHSLEDAEKA 334

Query: 80  CDTINV 85
              + V
Sbjct: 335 ARALGV 340


>gi|297194731|ref|ZP_06912129.1| NH(3)-dependent NAD(+) synthetase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152418|gb|EDY66850.2| NH(3)-dependent NAD(+) synthetase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 585

 Score = 43.2 bits (101), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VAA+     G  +V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALVAAIACDALGAQNVYGVSM-----------PSKYSSDHSKGDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               ++      E  F
Sbjct: 377 RRTGLNFRTVPIEPMF 392


>gi|148826939|ref|YP_001291692.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittGG]
 gi|189030632|sp|A5UEV3|THII_HAEIG RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|148718181|gb|ABQ99308.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittGG]
          Length = 485

 Score = 43.2 bits (101), Expect = 0.084,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|157164874|ref|YP_001466431.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter concisus 13826]
 gi|112801627|gb|EAT98971.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Campylobacter concisus 13826]
          Length = 510

 Score = 43.2 bits (101), Expect = 0.084,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 62/212 (29%), Gaps = 53/212 (25%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVA----------ALLKRDGYDVIGVTLQLYNSRKASK 62
           ++ K     +V+ A+SGGVDSSV A           +L         V +     R   K
Sbjct: 207 EIRKTVGTHKVLCAVSGGVDSSVTAALLAAAVPENLIL---------VFVDNGLLRTNEK 257

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVD 119
            +                  + V     D  E F      V+ P       GET      
Sbjct: 258 EQVEATFRT----------KLGVELVSIDASEIFLGRLAGVVDPEKKRKIIGETF----- 302

Query: 120 CNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178
                         ++ G    LA G      +     G  + I  +           + 
Sbjct: 303 ------IEIFEKEAKKHGDVKFLAQGTLYTDIIESSVVGSSKTI--KSHHN-------VG 347

Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                   +L  PL ++ K+ VR L  E+GL 
Sbjct: 348 GLPDWMTFELIEPLREIFKDEVRKLGLELGLS 379


>gi|148270790|ref|YP_001245250.1| ExsB family protein [Thermotoga petrophila RKU-1]
 gi|147736334|gb|ABQ47674.1| ExsB family protein [Thermotoga petrophila RKU-1]
          Length = 303

 Score = 42.8 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 52/203 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
           KD ++ VA SGG DSS+VA L K          + L   R    +         +     
Sbjct: 2   KDGKLYVAFSGGKDSSLVAILAK----------MALGEERVELVTVDWSPYTYERSREIV 51

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R   +   + H       R +  V       +  G +   C  C R VK   +    +  
Sbjct: 52  RNFAEKHGLKHTFIP-SNRMQEKV-------WRHGPS---CNACTRDVKTVLVKRYAQG- 99

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              ++A+G           D   +  +                        +  PL  + 
Sbjct: 100 --HLVASGANAS-------DSWGKTGLK-------------------VFDGVYSPLCRVG 131

Query: 197 KESVRDLAREMGLDIADKSDSQD 219
           KE + ++ + +GL++    +S  
Sbjct: 132 KEEINEMLKFLGLEVKKIGESAG 154


>gi|32261063|emb|CAE00214.1| WbpG protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 386

 Score = 42.8 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 45/249 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +V +SGG+DS+ +A L  R  G  ++ V              G   +   V++   +   
Sbjct: 71  MVGLSGGIDSAFLAHLAARKHGLRLLAVH-----------VDGGWNSEPAVHNIEILVRK 119

Query: 83  INVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-DV 140
           +++  + +  E +  R+  I    +S    + P           FS L     + G    
Sbjct: 120 LDLDLHTYVIEWQEMRDLQIAFMKASVLNQDIPQ------DHAFFSTLYRTAAKFGIRHF 173

Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSY-FLFATTQQQLCDLR---- 189
           L+  ++    +      Y   DG     + +     +  +Y F+       L  +R    
Sbjct: 174 LSGVNFASESVIPRGFGYPSIDGTHASAIQKRFGSLKLTTYPFMSPLEYIXLTRVRRQLT 233

Query: 190 --FPLG--DMKKESVR-DLAREMGLDIADKSDS--------QDICFVQQGKYFDVVKRIN 236
              PL   D  KE  R +L RE G        S        QDI ++ +   FD  +   
Sbjct: 234 IHRPLNYIDYNKEEARTELQREYGWRDYGGKHSESRFTKFYQDI-YLPRKFNFDKRRLHL 292

Query: 237 AGIALEGDI 245
           + + + G +
Sbjct: 293 SSLIVAGQM 301


>gi|325958150|ref|YP_004289616.1| exsB protein [Methanobacterium sp. AL-21]
 gi|325329582|gb|ADZ08644.1| exsB protein [Methanobacterium sp. AL-21]
          Length = 228

 Score = 42.8 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K   + V +SGG+DS+V +A  + D Y +  +T             G   A  ++  A+ 
Sbjct: 2  KKKAITV-LSGGLDSTVASAKFRED-YQIHALTF----------NYGQKSAEMEIKSAKA 49

Query: 79 VCDTINVSHYVFDY 92
          VC  +   H V + 
Sbjct: 50 VCKELGAEHTVIEL 63


>gi|319901663|ref|YP_004161391.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108]
 gi|319416694|gb|ADV43805.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108]
          Length = 423

 Score = 42.8 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +++VA+SGG DS  +  LL   GY         +     S R        D    R 
Sbjct: 18  QKDKILVALSGGADSVALLRLLLALGYTCEAAHCNFHLRGTESDR--------DETFVRN 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C T+ +  Y+  +             S   A  T          +++     + ++  A
Sbjct: 70  LCKTLQIPLYIIHFSTE--KEAKKRHVSIEMAART----------LRYEWFEKMRKECDA 117

Query: 139 DVLATGHY 146
            V+A  H+
Sbjct: 118 GVIAIAHH 125


>gi|291557382|emb|CBL34499.1| argininosuccinate synthase [Eubacterium siraeum V10Sc8a]
          Length = 408

 Score = 42.8 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++++A SGG+D+S++   L  +  G +VI V              G+     ++     
Sbjct: 6   KKIILAYSGGLDTSIIIPWLHENYPGCEVICV-------------AGNVGQDSEIVGLEE 52

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA------SSYAAGETPLPCVDCNRTVKFSDLLS 131
                     Y+ D ++ F N  I P          Y  G +        R      L+ 
Sbjct: 53  RAKKTGASKLYIEDIQDEFVNDFIFPTLKAGAKYEGYLLGTSFA------RPPIAKRLVE 106

Query: 132 VTRQLGADVLATG 144
           + ++ GAD +  G
Sbjct: 107 IAKKEGADAICHG 119


>gi|281413095|ref|YP_003347174.1| NAD synthase [Thermotoga naphthophila RKU-10]
 gi|281374198|gb|ADA67760.1| NAD synthase [Thermotoga naphthophila RKU-10]
          Length = 303

 Score = 42.8 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 52/203 (25%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76
           KD ++ VA SGG DSS+VA L K          + L   R    +         +     
Sbjct: 2   KDGKLYVAFSGGKDSSLVAILAK----------MALGEERVELVTVDWSPYTYERSREIV 51

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           R   +   + H       R +  V       +  G +   C  C R VK   +    +  
Sbjct: 52  RNFAEKHGLKHTFIP-SNRMQEKV-------WRHGPS---CNACTRDVKTVLVKRYAQG- 99

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
              ++A+G           D   +  +                        +  PL  + 
Sbjct: 100 --HLVASGANAS-------DSWGKTGLK-------------------VFDGVYSPLCRVG 131

Query: 197 KESVRDLAREMGLDIADKSDSQD 219
           KE + ++ + +GL++    +S  
Sbjct: 132 KEEINEMLKFLGLEVKKIGESAG 154


>gi|145636148|ref|ZP_01791818.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittHH]
 gi|145270670|gb|EDK10603.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittHH]
          Length = 485

 Score = 42.8 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|322712042|gb|EFZ03615.1| argininosuccinate synthase [Metarhizium anisopliae ARSEF 23]
          Length = 521

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + RV +A SGG+D+SV+   L+ +GY V+                G+    +D     + 
Sbjct: 4   NKRVCLAYSGGLDTSVILRYLRLEGYTVVA-------------YLGNVGQDEDWAAVEKK 50

Query: 80  CDTINVSHYVF-DYEERFRNA-VIV----PFASS--YAAGETPLPCVDCNRTVKFSDLLS 131
              +     V  D ++ F    V             Y  G +    V          L+ 
Sbjct: 51  ALALGAERMVIEDLQQEFLEELVFRGIQCNAIYEDRYLLGTSLARPVLA------RALVR 104

Query: 132 VTRQLGADVLATG 144
             ++    +L+ G
Sbjct: 105 TAQKYKCQILSHG 117


>gi|322371601|ref|ZP_08046147.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253]
 gi|320548892|gb|EFW90560.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253]
          Length = 322

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 73/221 (33%), Gaps = 46/221 (20%)

Query: 10  NSLDLDKNPKDMRV-VVAMSGGVDSSVVAALLKRD-----GYDVIGVTLQLYNSRKASKR 63
           N L     P D +V ++ +SGG DS V+  +L          +++ +T+           
Sbjct: 42  NLLPASATPDDPQVWLIGLSGGKDSVVLTKILHDTFAEDPRIELVALTIH---------- 91

Query: 64  KGSCCAGQDVYDA-RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVD 119
           +G         DA   + D +++ H V  YEE F    + V+          E    C  
Sbjct: 92  EGIEGYRDKSLDACLELTDDLDIRHEVVSYEEEFDLRMDDVVG------KDPENMAACAY 145

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGH-------YIRSRLYVGDDGKRRRIM---CRPMDL 169
           C    +   L     + GA+ L TGH               GD  +  +         D 
Sbjct: 146 CGVFRR-DLLSKYAEEYGANKLLTGHNLDDEAETALMNFLEGDVAQVAKHFDASLAGFDE 204

Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
             DQ  F+             PL D+ ++ V   A    L 
Sbjct: 205 RSDQDEFVPRAK---------PLRDVPEKEVALYAHLEDLP 236


>gi|302330131|gb|ADL20325.1| bifunctional GMP synthase [Corynebacterium pseudotuberculosis 1002]
          Length = 526

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V  AL++R  G  +  V     +       +              
Sbjct: 222 EGRAICGLSGGVDSAVAGALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 272

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D    F N +                 +          L S       
Sbjct: 273 VAST-GAKLVTVDERAAFLNKLAGVTDPEAKRKAIGAEFIRSFERAVAGVLESAPEGSSV 331

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 332 DFLVQGTLYPDVVESG--GGAGTANIKSHHN-------VGGLPDDVEFKLVEPLRLLFKD 382

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 383 EVRAVGRELGLP 394


>gi|289674881|ref|ZP_06495771.1| ExsB [Pseudomonas syringae pv. syringae FF5]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY  +  T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGY--VCYTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 AGDLGAVEHKVI 68


>gi|291287206|ref|YP_003504022.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884366|gb|ADD68066.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 417

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 33/132 (25%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKR----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R++VA SGG DS  VA L  LKR     GY V    +          RK S    +   D
Sbjct: 20  RLLVAFSGGKDS--VALLHFLKRNEGIQGYSVSACHI------NHLFRKTSLWDEKFCAD 71

Query: 76  ARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               C+ +++    Y  D   R+    +   +  + A           R V++  L +  
Sbjct: 72  F---CEKLSIPFISYRAD-VPRYCE--VKKMSFEHGA-----------RIVRYRALYNAM 114

Query: 134 RQLGADVLATGH 145
           +   A++L T H
Sbjct: 115 KHFDAELLLTAH 126


>gi|149182089|ref|ZP_01860573.1| hypothetical protein BSG1_08716 [Bacillus sp. SG-1]
 gi|148850191|gb|EDL64357.1| hypothetical protein BSG1_08716 [Bacillus sp. SG-1]
          Length = 532

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           DL +  K+ ++V+ +SGG DS ++A LLK+ G D I      Y  R+  +   S      
Sbjct: 183 DLGERTKNKKIVLPLSGGYDSRIIALLLKKFGNDNIIAF--TYGKRQNKEAGIS------ 234

Query: 73  VYDARRVCDTINVSHYVFDYEERFR 97
                 +   +N+    ++Y++   
Sbjct: 235 ----EGIAHGLNIPWEFYEYKKEDW 255


>gi|147919832|ref|YP_686419.1| hypothetical protein RCIX1925 [uncultured methanogenic archaeon
           RC-I]
 gi|110621815|emb|CAJ37093.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 377

 Score = 42.8 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 22/133 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VV +SGG DS+ V     + G   + V     +NS  A            V + +R    
Sbjct: 70  VVGVSGGRDSTYVLYNAIKLGLRPLAVHFDNGWNSDIA------------VSNIKRATTR 117

Query: 83  INVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +NV  +    D+ E F++       +S +  E P            S L       G   
Sbjct: 118 LNVDLHTVVADW-EEFKDLQKSFLKASVSDAEIPT------DYAILSVLYREAANAGTRY 170

Query: 141 LATGHYIRSRLYV 153
           +  GH  R+   V
Sbjct: 171 ILNGHSFRTEGIV 183


>gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891]
 gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891]
          Length = 435

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 42/209 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKR--DGYDV----IGVTLQLYNSRKASKRKGSCCAGQDV 73
           + R+V+ +SGG+DS V+  LL +    Y V    + V   L ++      +         
Sbjct: 18  NTRIVLGLSGGLDSRVMLELLAQYAQQYRVDCLAVHVHHGLSDNADQWAEQCQHW----- 72

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
                 C ++NV   V    E+    +                     R  +++ L    
Sbjct: 73  ------CQSLNVQLVV----EKVSLDIEGRSIEE------------SAREARYNALRKYL 110

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                D+L TG +   +L           + R     +  S             +  PL 
Sbjct: 111 SS--GDLLLTGQHADDQLE-----TFLLALKRGSGP-KGLSSMAAVMPFAS-AQIVRPLL 161

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICF 222
            + ++ + + A+ + L+  +   +QD  F
Sbjct: 162 SVTRQEIEEFAQSLDLEWVEDESNQDQRF 190


>gi|255691509|ref|ZP_05415184.1| asparagine synthase [Bacteroides finegoldii DSM 17565]
 gi|260622900|gb|EEX45771.1| asparagine synthase [Bacteroides finegoldii DSM 17565]
          Length = 555

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 40/211 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDY-EERFRNAV--IVPFASSYA----AGETPLPC---VDCNRTVKF 126
           R V + I   H+  +Y  +   +AV  ++ F  +Y        TP+     V  +  +K 
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAVRDVIYFIETYDVTTVRASTPMYLLARVIKSMGIKM 344

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------- 179
                   ++    L        + +  +  ++   +     L  ++S   +        
Sbjct: 345 VLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVPF 404

Query: 180 TTQQQLCDL--------RFPLGDMKKESVRD 202
             ++ L             P  +++K  VR+
Sbjct: 405 LDKEFLDVAMNLNPKAKMCPGKEIEKRIVRE 435


>gi|2921156|gb|AAC05081.1| aluminum resistance protein [Arthrobacter viscosus]
          Length = 187

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          RVV   SGG DS+           +V  VT   ++  +    +  C        A+++  
Sbjct: 23 RVV--FSGGQDSTTCLFWAMERFEEVEAVT---FDYNQRHSLEIEC--------AQKIAK 69

Query: 82 TINVSHYVFDYE 93
           + ++H++ D  
Sbjct: 70 ELGITHHILDMS 81


>gi|20094082|ref|NP_613929.1| ATPase [Methanopyrus kandleri AV19]
 gi|19887071|gb|AAM01859.1| Predicted ATPase of the PP-loop superfamily [Methanopyrus
          kandleri AV19]
          Length = 225

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVT 51
          MR V  +SGG DS++ A L   +GY++  G+T
Sbjct: 1  MRAVALLSGGKDSTLAAHLAVEEGYELTHGLT 32


>gi|84683380|ref|ZP_01011283.1| glutamine-dependent NAD(+) synthetase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668123|gb|EAQ14590.1| glutamine-dependent NAD(+) synthetase [Rhodobacterales bacterium
           HTCC2654]
          Length = 555

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGG+DS++VA +     G + +   +                +   + DA+ V
Sbjct: 288 KKVLLGLSGGIDSAIVATIAADALGPENVRCVM----------LPSEYTSQGSLDDAKAV 337

Query: 80  CDTINVSHYVF 90
            + +   +   
Sbjct: 338 AERLGCHYDFV 348


>gi|83953407|ref|ZP_00962129.1| NAD(+) synthase [Sulfitobacter sp. NAS-14.1]
 gi|83842375|gb|EAP81543.1| NAD(+) synthase [Sulfitobacter sp. NAS-14.1]
          Length = 552

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGG+DS++VA +     G D +   +                +   + DA  V
Sbjct: 285 KKVLLGLSGGIDSAIVATIAVDALGADNVRCVM----------LPSEYTSQASLDDAEAV 334

Query: 80  CDTINVSH 87
              +   +
Sbjct: 335 AKALGCRY 342


>gi|326445294|ref|ZP_08220028.1| putative secreted protein [Streptomyces clavuligerus ATCC 27064]
          Length = 601

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 14/63 (22%)

Query: 27  MSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
           +SGG+DSS VA L    G+ ++  VT                C+ +D+  ARRV   I++
Sbjct: 220 VSGGLDSSAVAILA--AGHGEIRAVT-----------YHDLYCSSEDLDYARRVAGHISI 266

Query: 86  SHY 88
             +
Sbjct: 267 PLH 269


>gi|313906545|ref|ZP_07839875.1| exsB protein [Eubacterium cellulosolvens 6]
 gi|313468614|gb|EFR63986.1| exsB protein [Eubacterium cellulosolvens 6]
          Length = 227

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          M+ +V  SGGVDS+    L  K+ G + VI +                    +++  AR 
Sbjct: 1  MKAMVLSSGGVDSTTALGLAIKKYGKENVIAL-----------SVSYGQKHDKEIQAARA 49

Query: 79 VCDTINVSHYVFDYEERFR 97
          V +   +     D  + F 
Sbjct: 50 VAEYYGIEQLFLDLSKIFS 68


>gi|312621376|ref|YP_004022989.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201843|gb|ADQ45170.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 235

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 28/141 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--KRDGY----DVIGVTLQLYNSRKASKRKGS 66
           D +   +  ++ V +S G DS  +   L   R  Y    +V+ +T+ +            
Sbjct: 14  DFNMIEEGDKIAVGVSAGKDSLTMLYTLSFLRKFYPKKFEVVAITVDMGFEGM------- 66

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                D    +  CD I+V  ++     + +  V               PC  C   ++ 
Sbjct: 67  -----DFLPIKEFCDKIDVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANLRR 111

Query: 127 SDLLSVTRQLGADVLATGHYI 147
             L S  + LG + +A GH++
Sbjct: 112 GILNSTAKSLGCNKVALGHHL 132


>gi|300857847|ref|YP_003782830.1| GMP synthase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685301|gb|ADK28223.1| GMP synthase [Corynebacterium pseudotuberculosis FRC41]
 gi|302205577|gb|ADL09919.1| bifunctional GMP synthase [Corynebacterium pseudotuberculosis C231]
 gi|308275812|gb|ADO25711.1| bifunctional GMP synthase [Corynebacterium pseudotuberculosis I19]
          Length = 525

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 20/192 (10%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +  +SGGVDS+V  AL++R  G  +  V     +       +              
Sbjct: 221 EGRAICGLSGGVDSAVAGALVQRAIGDRLTCVF---VDHGLLRAGEREQVEKDF------ 271

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V  T        D    F N +                 +          L S       
Sbjct: 272 VAST-GAKLVTVDERAAFLNKLAGVTDPEAKRKAIGAEFIRSFERAVAGVLESAPEGSSV 330

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
           D L  G      +  G  G       +           +          L  PL  + K+
Sbjct: 331 DFLVQGTLYPDVVESG--GGAGTANIKSHHN-------VGGLPDDVEFKLVEPLRLLFKD 381

Query: 199 SVRDLAREMGLD 210
            VR + RE+GL 
Sbjct: 382 EVRAVGRELGLP 393


>gi|256822303|ref|YP_003146266.1| NAD+ synthetase [Kangiella koreensis DSM 16069]
 gi|256795842|gb|ACV26498.1| NAD+ synthetase [Kangiella koreensis DSM 16069]
          Length = 539

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 13/76 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +SGG+DS+V  A+     G + V  V +                A   + DA     
Sbjct: 282 LLGLSGGIDSAVTLAVAVDALGKENVNAVMM-----------PFRYTASMSIEDAEEEAK 330

Query: 82  TINVSHYVFDYEERFR 97
            + +   V   E  + 
Sbjct: 331 ALGIEFDVISIEPMYE 346


>gi|187251952|ref|YP_001876434.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191]
 gi|186972112|gb|ACC99097.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191]
          Length = 241

 Score = 42.8 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 27/135 (20%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA-----LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
            +  +V+V +SGG DS V        L ++  + V    +  ++ R+ +K+        D
Sbjct: 23  KRGDKVLVGVSGGADS-VCLLHFLTQLAQKKRFRVYACHI-NHSLRENAKK--------D 72

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
               +++C+ + V  +V          V           +  L      R  ++S   S 
Sbjct: 73  ELFTKKLCEQLGVELFVI------TKDVKNIAL------KNKLSIEHAARKARYSAFESA 120

Query: 133 TRQLGADVLATGHYI 147
            +++ A  LA  H++
Sbjct: 121 AKKINAGYLALAHHL 135


>gi|330896139|gb|EGH28360.1| ExsB [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY  +  T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGY--VCYTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 AGDLGAVEHKVI 68


>gi|312623036|ref|YP_004024649.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203503|gb|ADQ46830.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 456

 Score = 42.8 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 45/152 (29%), Gaps = 31/152 (20%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV---VAALLKRDGY--DVIGVTLQLY 55
           M   E  + N        +  +V++  SGGVDS V       LK   Y  D+    L   
Sbjct: 1   MEFLEKVKSNIEKYGMLEEGFKVLIGCSGGVDSMVLLDCILRLKDK-YNLDITVAHLNHM 59

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGET 113
              +A           D      +C   N+       D  +  +        S   AG  
Sbjct: 60  LRPEADD---------DEKFVIEMCKRYNIKCITRKVDVAKLKKEK----GLSEEEAGRN 106

Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145
                      ++S    V  +L  D +  GH
Sbjct: 107 A----------RYSFFYEVAEELNIDRILLGH 128


>gi|15805701|ref|NP_294397.1| argininosuccinate synthase [Deinococcus radiodurans R1]
 gi|24211538|sp|Q9RWJ4|ASSY_DEIRA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|6458375|gb|AAF10250.1|AE001924_3 arginosuccinate synthase [Deinococcus radiodurans R1]
          Length = 402

 Score = 42.8 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V+A SGG+D+S++   L+    YDV+  T  L    +  + +              V 
Sbjct: 5   KIVLAYSGGLDTSIILKWLQTERNYDVVCFTADLGQGDEVEEARVKALNTG------AVA 58

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y  D  E F    + P   S       Y  G +        R +    ++ + 
Sbjct: 59  A------YALDLREEFVRDYVFPMMRSSALYEGYYLLGTSIA------RPLIAKKMVEIA 106

Query: 134 RQLGADVLATG 144
            + GA  ++ G
Sbjct: 107 EKEGAVAISHG 117


>gi|317500413|ref|ZP_07958637.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089580|ref|ZP_08338479.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898168|gb|EFV20215.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404948|gb|EGG84486.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 244

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   + V +SGG DS         LKR     +D+  VT+ L  +              +
Sbjct: 22  EGDHIAVGISGGKDSLTLLYALHGLKRFYPRKFDLSAVTVDLGFAD------------FN 69

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   + +C  + V + +       ++ +     +         PC  C +  K   L   
Sbjct: 70  LEPIQNLCRELEVPYKIV------KSDIYDILFNVRQES---NPCSLCAKMRK-GALNEA 119

Query: 133 TRQLGADVLATGHY 146
            +++G + +A  H+
Sbjct: 120 VKEMGCNKVAYAHH 133


>gi|311696298|gb|ADP99171.1| thiamine biosynthesis protein [marine bacterium HP15]
          Length = 462

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DSSV A L+ R G     +   L  +      +       D Y A      
Sbjct: 159 VLTLISGGYDSSVAAYLMMRRGLRNHFLFFNLGGTAHEVGVRQVVHYLWDRYGASHSAKF 218

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL---SVTRQLGAD 139
           I+V              V+     S +              +K   L+    + R+  A 
Sbjct: 219 ISVPF----------EGVVAEIMRSVSH-------RHWGVVLKRQMLMAAAEIARKNNAS 261

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TG  +           +       +D   D+              +  PL  M KES
Sbjct: 262 GVVTGDAVAQV------SSQTLSNLNVVDRASDEV-------------VLRPLVSMDKES 302

Query: 200 VRDLAREMGLDIADKS 215
           +  +ARE+G ++  ++
Sbjct: 303 IIRIAREIGTEVYARN 318


>gi|325107816|ref|YP_004268884.1| NAD+ synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324968084|gb|ADY58862.1| NAD+ synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 562

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 27/191 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS+V   L  R  G + V  + +                +   V D++++  
Sbjct: 295 VLGLSGGIDSAVACCLAARALGPEKVHALMM-----------PSRYSSDHSVADSQQLAT 343

Query: 82  TINVSHYVFDYEERFR----NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            + +   +   +E  +      VI    S   AG   L   +    ++ + ++  + + G
Sbjct: 344 NLGLDAQLVPIDEVHQAYEATRVIGGDLSGQPAG---LADQNLQARIRGALVMVRSNRYG 400

Query: 138 ADVLATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
              LATG+            GD      ++    D+ +   Y L             P  
Sbjct: 401 WLPLATGNKSELAVGYCTLYGDMAGGFAVL---SDVFKRDVYALARHINDISGQEIIPEH 457

Query: 194 DMKKESVRDLA 204
            + K    +LA
Sbjct: 458 IITKPPSAELA 468


>gi|297742514|emb|CBI34663.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 41/206 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+ +  G  +  V +     R   + +      +D      
Sbjct: 186 DDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMETFERD------ 239

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D   +F +    V+ P               +  R +   + +S    
Sbjct: 240 ----LHLPVTCVDATNQFLSKLKGVVDP---------------EMKRKIIGKEFISSFDA 280

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYF------LFATTQQQLC 186
            G D+    H    +      G     +   C P    R  S+       +    +    
Sbjct: 281 FGQDL---EHKFGKKPVYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKL 337

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
            L  PL  + K+ VR+L R + +  A
Sbjct: 338 KLIEPLKLLFKDEVRELGRILNVPRA 363


>gi|268323711|emb|CBH37299.1| conserved hypothetical protein [uncultured archaeon]
          Length = 265

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 49/224 (21%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA SGGVDS     LLK   +DV      L     A          +++ +     +  
Sbjct: 18  LVAFSGGVDSG---FLLKVA-HDV------LAEKVLAVTVYCELFPKRELEELESFLNLA 67

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            + + +  +     +  +            P   C  C R      L  +  + G   +A
Sbjct: 68  GIPYKIAQFYPLRNDNFV----------RNPCNRCYYCKRDFAM-ILKEIATEKGISTIA 116

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESV 200
            G      +   D  + R  +    +                   +  PL +  + K  +
Sbjct: 117 EG------VTSSDIDEYRPGIAASKEEG-----------------VWHPLVEVGITKHEL 153

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           R +A+++GL   DK  S   C   + +Y + +      +  E +
Sbjct: 154 RQIAKDIGLPFWDKPHSP--CLATRIEYEERITLEKLKMIEEAE 195


>gi|291612994|ref|YP_003523151.1| exsB protein [Sideroxydans lithotrophicus ES-1]
 gi|291583106|gb|ADE10764.1| exsB protein [Sideroxydans lithotrophicus ES-1]
          Length = 225

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R VV +SGG+DS+ V A+ +  G++   +          S   G     + +  A+RV 
Sbjct: 3  KRAVVLLSGGLDSATVLAMARTQGFECYAL----------SVDYGQRHHAE-LAAAQRVA 51

Query: 81 DTIN 84
           ++ 
Sbjct: 52 QSLG 55


>gi|262203631|ref|YP_003274839.1| asparagine synthase family amidotransferase [Gordonia bronchialis
           DSM 43247]
 gi|262086978|gb|ACY22946.1| asparagine synthase family amidotransferase [Gordonia bronchialis
           DSM 43247]
          Length = 599

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG 44
           D+ V V +SGG+DSS+V ALL   G
Sbjct: 260 DVPVGVLLSGGIDSSLVVALLAEQG 284


>gi|153814901|ref|ZP_01967569.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756]
 gi|145847932|gb|EDK24850.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756]
          Length = 250

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   + V +SGG DS         LKR     +D+  VT+ L  +              +
Sbjct: 28  EGDHIAVGISGGKDSLTLLYALHGLKRFYPRKFDLSAVTVDLGFAD------------FN 75

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
           +   + +C  + V + +       ++ +     +         PC  C +  K   L   
Sbjct: 76  LEPIQNLCRELEVPYKIV------KSDIYDILFNVRQES---NPCSLCAKMRK-GALNEA 125

Query: 133 TRQLGADVLATGHY 146
            +++G + +A  H+
Sbjct: 126 VKEMGCNKVAYAHH 139


>gi|119496839|ref|XP_001265193.1| PP-loop ATPase superfamily protein, putative [Neosartorya fischeri
           NRRL 181]
 gi|119413355|gb|EAW23296.1| PP-loop ATPase superfamily protein, putative [Neosartorya fischeri
           NRRL 181]
          Length = 420

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A++LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERYN-YGLELCLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLEIVGYSELYGWTMDQVVE------QVGKKGN-CTYCGVFRR-QALDRGAARL 159

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 160 GIKHVVTGHNA 170


>gi|126178433|ref|YP_001046398.1| PP-loop domain-containing protein [Methanoculleus marisnigri JR1]
 gi|125861227|gb|ABN56416.1| PP-loop domain protein [Methanoculleus marisnigri JR1]
          Length = 343

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 23/128 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V VA+SGG DSS V   L R   +  DV     +L          G     +D   AR++
Sbjct: 50  VAVALSGGKDSSAVLFFLHRLLGERRDV-----RLMAITVDEGISGY----RDPNQARKI 100

Query: 80  CDTINVSHYVFDYEERFR---NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +++ V      + + +R   + ++       A   T L C  C   ++ + +  + R+ 
Sbjct: 101 AESMGVPWVTATFADEYRITLDEIV-------ARKGTGLSCSYCG-VLRRALMNRIAREH 152

Query: 137 GADVLATG 144
                A G
Sbjct: 153 DVTKFAYG 160


>gi|194337627|ref|YP_002019421.1| GMP synthase, large subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|226739653|sp|B4SFX7|GUAA_PELPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194310104|gb|ACF44804.1| GMP synthase, large subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 513

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 36/202 (17%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           ++ +      V+  +SGGVDS+V A ++ K  G  +  V +     RK    K       
Sbjct: 213 EISRKAGKETVICGISGGVDSTVAAVMVGKAIGKQLHCVFVDNGLLRKNEAEKVMTFLS- 271

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSD 128
                     T+ +   + D  + F      V  P       G T +   +         
Sbjct: 272 ----------TLGLRVTLVDASDLFLKRLKTVASPEKKRKIIGRTFIQVFEEQME----- 316

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
                 +           I S    G     +                +    ++    L
Sbjct: 317 ----QEKFLVQGTLYPDVIESVSVKGPSETIKSHHN------------VGGLPKRMKLKL 360

Query: 189 RFPLGDMKKESVRDLAREMGLD 210
             PL ++ K+ VR + RE+G+ 
Sbjct: 361 IEPLRELFKDEVRAVGRELGIA 382


>gi|70990742|ref|XP_750220.1| PP-loop ATPase superfamily protein [Aspergillus fumigatus Af293]
 gi|66847852|gb|EAL88182.1| PP-loop ATPase superfamily protein, putative [Aspergillus fumigatus
           Af293]
 gi|159130696|gb|EDP55809.1| PP-loop ATPase superfamily protein, putative [Aspergillus fumigatus
           A1163]
          Length = 420

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A++LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERYN-YGLELCLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLEIVGYSELYGWTMDQVVE------QVGKKGN-CTYCGVFRR-QALDRGAARL 159

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 160 GIKHVVTGHNA 170


>gi|308050952|ref|YP_003914518.1| preQ(0) biosynthesis protein QueC [Ferrimonas balearica DSM 9799]
 gi|307633142|gb|ADN77444.1| preQ(0) biosynthesis protein QueC [Ferrimonas balearica DSM 9799]
          Length = 220

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + + VV  SGG+DS  V   +  +GY    +T   ++  +   ++        V  A+ V
Sbjct: 2  EKKAVVIYSGGMDSFTVLHKVITEGYTPYAIT---FDYGQRHDKE--------VEYAKVV 50

Query: 80 CDTINVSHYVFD 91
          C  + ++H + D
Sbjct: 51 CSELGINHKIID 62


>gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121]
 gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121]
          Length = 434

 Score = 42.8 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 1  MVVSEATRL----NSLDLDKNPKDMRVVVAMSGGVDSSVV-AALLKRD--GYDVIGVTLQ 53
          M +S+ + L    NS       K+  + + +SGGVDS V    LL     G+ V  + + 
Sbjct: 1  MALSKESFLAGLDNSFHQYLGTKEQPIYLGLSGGVDS-VALLHLLVEAGLGHRVKAIHIH 59


>gi|294660494|ref|NP_853282.2| thiamine biosynthesis protein ThiI [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812155|gb|AAP56850.2| Thiamine biosynthesis protein ThiI [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930768|gb|ADC30707.1| Thiamine biosynthesis protein ThiI [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931327|gb|ADC31265.1| Thiamine biosynthesis protein ThiI [Mycoplasma gallisepticum str.
           F]
          Length = 396

 Score = 42.8 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 38/226 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+V +SGG+DS V + LL + G  V  +T              +    Q V     V D
Sbjct: 176 KVLVLLSGGIDSPVASDLLYKRGMHVDFLTFITPPHTSKQALDKTVLLAQTVSKHNEVSD 235

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 ++ ++    +   I      Y         +   R   +     +  Q G D +
Sbjct: 236 A---KIFIHNFTNVLKE--ISHT--KYENYR-----ITLMRRCFYKIANKLINQYGYDCI 283

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
           ATG  +        +  +                 +   ++  L  +  PL    K  + 
Sbjct: 284 ATGESLGQVASQTINSMK----------------AISNASKDLL--VLRPLLCYDKSQII 325

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247
           + A+++         + +I  +       +            +I+ 
Sbjct: 326 EHAKKIK--------TYEISILPYSDACSLYAPKKPITNPRIEIID 363


>gi|225175457|ref|ZP_03729452.1| asparagine synthase [Dethiobacter alkaliphilus AHT 1]
 gi|225169209|gb|EEG78008.1| asparagine synthase [Dethiobacter alkaliphilus AHT 1]
          Length = 483

 Score = 42.8 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 26/99 (26%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           VA+SGG+DSS++ A+ +                  A     +   G+D+  A+ + D + 
Sbjct: 206 VALSGGLDSSIILAVARE-----------FDKDIAAFTATFAERHGEDLEYAKLLADQLG 254

Query: 85  VSHYVFDYEER---------------FRNAVIVPFASSY 108
           V H++++                   F    I  F ++Y
Sbjct: 255 VDHHIYEITREDIKNVLPEAVWYLESFDEDCITGFIANY 293


>gi|158520513|ref|YP_001528383.1| exsB protein [Desulfococcus oleovorans Hxd3]
 gi|158509339|gb|ABW66306.1| exsB protein [Desulfococcus oleovorans Hxd3]
          Length = 228

 Score = 42.8 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 14/76 (18%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          R VV  SGG+DS+   A+    G+ V  +T                    ++  AR V  
Sbjct: 7  RAVVLSSGGIDSTTAMAMAVSQGFSVFSLTFDY-----------GQRHRHELSAARAVAR 55

Query: 82 TINVSHYVF---DYEE 94
           +N   ++    D+ +
Sbjct: 56 HLNAEKHLVLETDFRK 71


>gi|313905490|ref|ZP_07838854.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6]
 gi|313469674|gb|EFR65012.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6]
          Length = 507

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 32/207 (15%)

Query: 23  VVVAMSGGVDSSVVAAL-LKR---DG----YDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           V V +SGG DS V   L LK     G    Y +  V +        +       A  D  
Sbjct: 23  VCVGLSGGADS-VALLLVLKEILKMGSVGEYRLAAVHI--------NHNLRGQAAEDDSR 73

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             R +C    +   +      +   V         AG   +   +  R V+        +
Sbjct: 74  FVRELCANREIPLKI------YSCPVAEY------AGVRKIGLEEAGREVRHEKFALAAK 121

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF--PL 192
           +   ++ A     +  L    D +   ++ R        S          L +L    PL
Sbjct: 122 EFAEEMEADPAKAKIALAHHADDQAETLLFRAA-RGSSLSGLAGIRPSATLGELLLIRPL 180

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQD 219
             + ++ +    R+ G++      + D
Sbjct: 181 LSVTRDEIEAWLRQKGVNWRTDETNAD 207


>gi|269215411|ref|ZP_06159265.1| ExsB protein [Slackia exigua ATCC 700122]
 gi|269130898|gb|EEZ61973.1| ExsB protein [Slackia exigua ATCC 700122]
          Length = 268

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
             R +V  SGG+DS+   AL             +   +  ++         +   D A+ 
Sbjct: 31  PTRALVLSSGGIDSTTCLALAVE----------RFSTANVSTVSFFYGQRHRKELDAAQA 80

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113
           V +   V+HYV D        V+    ++  AG T
Sbjct: 81  VAERYGVAHYVLDIAS-----VLRYSDNALMAGST 110


>gi|146306313|ref|YP_001186778.1| exsB protein [Pseudomonas mendocina ymp]
 gi|189038935|sp|A4XRT0|QUEC_PSEMY RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|145574514|gb|ABP84046.1| preQ(0) biosynthesis protein QueC [Pseudomonas mendocina ymp]
          Length = 224

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D + V+ +SGG+DS+ V A+ + +GY               S   G     + +  A R
Sbjct: 2  SDKKAVILLSGGLDSATVVAMARAEGYAC----------YSMSFDYGQRHRAE-LQAAER 50

Query: 79 VCDTIN-VSHYVF 90
          V   +  V H V 
Sbjct: 51 VARQLGVVEHKVV 63


>gi|118362792|ref|XP_001014938.1| asparagine synthase [Tetrahymena thermophila]
 gi|89296388|gb|EAR94376.1| asparagine synthase [Tetrahymena thermophila SB210]
          Length = 585

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 27  MSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG----QDVYDARRV 79
           +SGGVDSS+VAA    L ++G        ++   ++   +  S C G     D+  +++V
Sbjct: 243 ISGGVDSSIVAAITVRLVQEG--------KIDIKKRGMDKVHSFCIGLKGSPDIESSQKV 294

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + +   H+ F Y        I                      +    L    + LG  
Sbjct: 295 AEYLGTEHHAFIYTPEEGIDAIPDVIYHTETYNNTTIRASTPMYI----LARKIKALGIK 350

Query: 140 VLATGHYI 147
              TG   
Sbjct: 351 YCLTGEGA 358


>gi|55378034|ref|YP_135884.1| thiamine biosynthesis protein ThiI [Haloarcula marismortui ATCC
           43049]
 gi|55230759|gb|AAV46178.1| probable thiamine biosynthesis protein ThiI [Haloarcula marismortui
           ATCC 43049]
          Length = 395

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
           VV  +SGG+DS V A  L + G  VI V + L +      R
Sbjct: 188 VVALISGGIDSPVAAWKLMKRGAPVIPVYVDLGDYGGPDHR 228


>gi|325109609|ref|YP_004270677.1| asparagine synthase [Planctomyces brasiliensis DSM 5305]
 gi|324969877|gb|ADY60655.1| asparagine synthase [Planctomyces brasiliensis DSM 5305]
          Length = 611

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 7   TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
              NS      P      V +SGG+DS ++AA LK  G++    TL      K++  +  
Sbjct: 221 AEFNSALTRHRPTHAETTVLLSGGLDSRLMAAHLKEQGFEFTATTL-----GKSTDFE-- 273

Query: 67  CCAGQDVYDARRVCDTINVSH 87
                 V  AR+V   +NV  
Sbjct: 274 ------VRGARQVAAALNVPW 288


>gi|307705448|ref|ZP_07642303.1| queuosine biosynthesis protein queC [Streptococcus mitis SK597]
 gi|307620983|gb|EFO00065.1| queuosine biosynthesis protein queC [Streptococcus mitis SK597]
          Length = 217

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDLEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|292654746|ref|YP_003534643.1| n-type ATP pyrophosphatase superfamily protein [Haloferax volcanii
           DS2]
 gi|291372586|gb|ADE04813.1| n-type ATP pyrophosphatase superfamily [Haloferax volcanii DS2]
          Length = 321

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 27/148 (18%)

Query: 10  NSLDLDKNPKDMRV-VVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRKASKR 63
           N L  D +P++ +  V+ +SGG DS V+  +L     +    +++ +T+           
Sbjct: 42  NMLPRDASPENPQTWVIGLSGGKDSVVLTHILDDTFGRDPRIELVALTIH---------- 91

Query: 64  KGSCCAGQDVYDA-RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVD 119
           +G         DA   + + +++ H +  YE+ F    + V+          E    C  
Sbjct: 92  EGIEGYRDKSVDACVELAEDLDIHHELVTYEDEFGVQMDDVVE------KDPENMAACAY 145

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYI 147
           C    +   L     +LGAD L TGH +
Sbjct: 146 CGVFRR-DLLERFADELGADKLLTGHNL 172


>gi|18313243|ref|NP_559910.1| hypothetical protein PAE2295 [Pyrobaculum aerophilum str. IM2]
 gi|18160762|gb|AAL64092.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 324

 Score = 42.8 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 23  VVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
           V +A+SGG DS V+      LK  G  + GV ++ +   +      SC       D  R 
Sbjct: 52  VAIAVSGGKDSLVLLYILGRLKERG-TLGGVKMEAFTINEGHPY--SCFYRMSRRDYVRD 108

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----- 133
           +     + + V+ +++ F    +        AG     C           L         
Sbjct: 109 LASKFGIEYNVYHFKDIFGVTAMELSERLAKAGHEVHMCTID------GVLRRRAMNIIG 162

Query: 134 RQLGADVLATGHYI 147
           +  G   +AT H +
Sbjct: 163 KARGWTKIATAHNL 176


>gi|330877969|gb|EGH12118.1| exsB protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 221

 Score = 42.8 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 15 EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 63

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 64 ARDLGAVEHKVI 75


>gi|297544089|ref|YP_003676391.1| GMP synthase, large subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841864|gb|ADH60380.1| GMP synthase, large subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 512

 Score = 42.8 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V A+SGGVDSSV A L+ R  +D ++ +     ++    K +G             
Sbjct: 217 KHKAVCALSGGVDSSVAAVLVDRAIHDQLVCIF---VDTGLLRKNEGDMVIETFR----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D ++RF + +                 +  N  +          ++G 
Sbjct: 269 --KNYDMNIIRVDAKDRFLSRLKGVTDPEEKRK------IIGNVFI--EVFKEEALKIGD 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        V + G       +           +    +    +L  PL  + K
Sbjct: 319 VKFLVQG---TLYPDVIESGNGVSSTIKSHHN-------VGGLPEDIGFELIEPLKMLFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+G+ 
Sbjct: 369 DEVRQVGKELGIP 381


>gi|150401226|ref|YP_001324992.1| PP-loop domain-containing protein [Methanococcus aeolicus Nankai-3]
 gi|150013929|gb|ABR56380.1| PP-loop domain protein [Methanococcus aeolicus Nankai-3]
          Length = 334

 Score = 42.8 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 18/127 (14%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +PKD  ++V +SGG DS  +  LL+  R  Y   G+  ++Y        + +    +   
Sbjct: 73  SPKD-HIIVGLSGGKDSLALLHLLEPYRRKY---GI--KIYAITVDLNIENNRPWSETNK 126

Query: 75  DARRV---CDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSDL 129
           +  +V   C  +N+ H +      +   V+      S    G    PC  C+  V+   L
Sbjct: 127 NMDKVINHCKNLNIPHKII----GYDQDVVQMSKILSENTKGIEYSPCFSCS-VVRRHVL 181

Query: 130 LSVTRQL 136
            +  R+L
Sbjct: 182 TNFAREL 188


>gi|88608610|ref|YP_505997.1| NAD+ synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|88600779|gb|ABD46247.1| NAD+ synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 268

 Score = 42.8 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 18/86 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRVCD 81
           V+V +SGG+DS++VAA+                NSR  +    S     D + DA  +  
Sbjct: 24  VIVGLSGGIDSALVAAIATDA----------FGNSRVRTVMMPSPYTSTDSLDDALEIAH 73

Query: 82  TINVSHYVF-------DYEERFRNAV 100
            + V+H V         ++E F + V
Sbjct: 74  RLGVAHTVIRIDGLLQSFKEVFSHCV 99


>gi|14520383|ref|NP_125858.1| NAD synthetase [Pyrococcus abyssi GE5]
 gi|14548122|sp|Q9V2A9|NADE_PYRAB RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|5457598|emb|CAB49089.1| nadE NH(3)-dependent NAD+ synthetase [Pyrococcus abyssi GE5]
          Length = 257

 Score = 42.8 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 45/181 (24%)

Query: 32  DSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS+ V  L  K  G + V+G+ +  Y +             QDV DA+ V +++ + + V
Sbjct: 34  DSATVTYLATKALGREKVLGLIMPYYEN-------------QDVEDAKLVVESLGIEYRV 80

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
            +        ++    S              N   +   ++        + +  G   RS
Sbjct: 81  INIRP-----IVDTIVSEIGIELDKK--SLGNVMARTRMMILYAHANSMNRMVLGTSNRS 133

Query: 150 RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
               G             D   D +                PL ++ K  V ++A+ +G+
Sbjct: 134 EFLTG------YFTKWG-DGASDYA----------------PLINLYKTEVWEIAKRIGV 170

Query: 210 D 210
            
Sbjct: 171 P 171


>gi|313126239|ref|YP_004036509.1| preq(0) biosynthesis protein quec [Halogeometricum borinquense
          DSM 11551]
 gi|312292604|gb|ADQ67064.1| preQ(0) biosynthesis protein QueC [Halogeometricum borinquense
          DSM 11551]
          Length = 236

 Score = 42.8 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+  A   K  GYD+  +    Y  +  +K         +  DA    + +
Sbjct: 11 VVLLSGGMDSATTAYEAKARGYDLYCLH-TSYGQKTETKEYDCATQLAEELDAE---EFL 66

Query: 84 NVS 86
          ++ 
Sbjct: 67 HIE 69


>gi|315125894|ref|YP_004067897.1| argininosuccinate synthase [Pseudoalteromonas sp. SM9913]
 gi|315014408|gb|ADT67746.1| argininosuccinate synthase [Pseudoalteromonas sp. SM9913]
          Length = 400

 Score = 42.8 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S +   LK + G +VI                G      +  +A+ +
Sbjct: 5   KKVVLAYSGGLDTSAIVPWLKENYGCEVIAF----------VADVGQGAEELEGVEAKAI 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   YV D ++   +  I P          +Y  G +    +     V       +
Sbjct: 55  ASGAS-ECYVVDLKDEMVSDYIYPTLKTGSIYEGTYLLGTSMARPIIAKAQV------EI 107

Query: 133 TRQLGADVLATG 144
            R++GAD L+ G
Sbjct: 108 ARKVGADALSHG 119


>gi|271964263|ref|YP_003338459.1| thiamine biosynthesis protein ThiI [Streptosporangium roseum DSM
           43021]
 gi|270507438|gb|ACZ85716.1| thiamine biosynthesis protein ThiI [Streptosporangium roseum DSM
           43021]
          Length = 400

 Score = 42.8 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 59/194 (30%), Gaps = 34/194 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V MSGG+DS V A  + R G  V    L        +           +Y A  +   +
Sbjct: 192 LVLMSGGIDSPVAAYRMMRRGLRVD--FLHFSGIPFTTSES--------IYKAYALVRAL 241

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           +     F    R           S  A       V   R +       V R+L A  L T
Sbjct: 242 D----RFQGRSRLWVVPFGKAQQSIKASGQDRLAVISQRRLMLKTAEEVARRLRAGALIT 297

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +      G    +        D   D               +  PL  + K  +   
Sbjct: 298 GDSL------GQVSSQTLQNITAQDDAVD-------LP------ILRPLIGLDKTEIMAE 338

Query: 204 AREMG-LDIADKSD 216
           AR +G L+I++  D
Sbjct: 339 ARRIGTLEISELPD 352


>gi|126660538|ref|ZP_01731644.1| NAD synthetase [Cyanothece sp. CCY0110]
 gi|126618181|gb|EAZ88944.1| NAD synthetase [Cyanothece sp. CCY0110]
          Length = 562

 Score = 42.8 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DSS+VAA+     G + V+G+ +                +   + DA  +
Sbjct: 306 KAVLGLSGGIDSSLVAAIAVEALGKENVLGILM-----------PSPYSSTHSIRDAEAL 354

Query: 80  CDTINV 85
            + + +
Sbjct: 355 VNNLEI 360


>gi|313903353|ref|ZP_07836745.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466441|gb|EFR61963.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 304

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+ R++VA+SGG DS +    +L R GY+  G  + L    + SKR             R
Sbjct: 46  KNDRILVAVSGGKDS-LAVWDVLLRLGYEAHGFYIDL-GIGEYSKRST--------EKVR 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                   +  +   EE +                 P  C  C    ++     V  + G
Sbjct: 96  NFAAERGATLRIVSVEEEYGLG----TQELARKVRRPA-CSACGLNKRY-LFNKVALEGG 149

Query: 138 ADVLATGHYI 147
            DV+ TGH +
Sbjct: 150 YDVIVTGHNL 159


>gi|307707094|ref|ZP_07643891.1| queuosine biosynthesis protein queC [Streptococcus mitis SK321]
 gi|307617620|gb|EFN96790.1| queuosine biosynthesis protein queC [Streptococcus mitis SK321]
          Length = 217

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDLEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|289577802|ref|YP_003476429.1| GMP synthase, large subunit [Thermoanaerobacter italicus Ab9]
 gi|289527515|gb|ADD01867.1| GMP synthase, large subunit [Thermoanaerobacter italicus Ab9]
          Length = 512

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V A+SGGVDSSV A L+ R  +D ++ +     ++    K +G             
Sbjct: 217 KHKAVCALSGGVDSSVAAVLVDRAIHDQLVCIF---VDTGLLRKNEGDMVIETFR----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D ++RF + +                 +  N  +          ++G 
Sbjct: 269 --KNYDMNIIRVDAKDRFLSRLKGVTDPEEKRK------IIGNVFI--EVFKEEALKIGD 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        V + G       +           +    +    +L  PL  + K
Sbjct: 319 VKFLVQG---TLYPDVIESGNGVSSTIKSHHN-------VGGLPEDIGFELIEPLKMLFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+G+ 
Sbjct: 369 DEVRQVGKELGIP 381


>gi|78777570|ref|YP_393885.1| argininosuccinate synthase [Sulfurimonas denitrificans DSM 1251]
 gi|119361342|sp|Q30QT1|ASSY_SULDN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|78498110|gb|ABB44650.1| argininosuccinate synthase [Sulfurimonas denitrificans DSM 1251]
          Length = 404

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+ + Y    VT                  G++V  AR   
Sbjct: 6   KKVVLAYSGGLDTSVILKWLQDE-YKCEVVTF-----------TADIGQGEEVEPARAKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R V      
Sbjct: 54  LALGIKPENIFIDDLREEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQV------ 107

Query: 131 SVTRQLGADVLATG 144
            +     AD ++ G
Sbjct: 108 EIAHLTNADGVSHG 121


>gi|71735695|ref|YP_275903.1| exsB protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|110816243|sp|Q48FD4|QUEC_PSE14 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|71556248|gb|AAZ35459.1| exsB protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|330950597|gb|EGH50857.1| ExsB [Pseudomonas syringae Cit 7]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGY--TCYTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 AGDLGAVEHKVI 68


>gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
 gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
          Length = 522

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 68/225 (30%)

Query: 20  DMRVVVAMSGGVDS-------------SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66
           + RVV A+SGG DS             +VVA L                     + R GS
Sbjct: 18  EGRVVAAVSGGGDSVALAVLLAAVGREAVVAHL-------------------DHALRPGS 58

Query: 67  CCAGQDVYDARRVCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
                   DAR VC+    +             +  V     +               R 
Sbjct: 59  E------ADARFVCELAGRLGFPCE--------QRRVDAAAVARRKREN----LEAVARE 100

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
           ++++ L  V R  GA  + T H +       +       + R                + 
Sbjct: 101 LRYAFLAEVARAYGAACVLTAHTL-----EDNAETVLLQLFRGAGRALG--------IRA 147

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228
           +   +  PL ++ +  +R   RE G    +   ++ +C      Y
Sbjct: 148 KRGRVARPLLEISRTELRAYLRERGERWLEDPSNELVCL--DRNY 190


>gi|254822979|ref|ZP_05227980.1| GMP synthase [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 25/195 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D   +  +SGGVDS+V AAL++R  G  +  V     +     + + +            
Sbjct: 209 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLREGERAQVQRDF------ 259

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V  T   +    D  + F +A   V  P       G   +   +        D  + +  
Sbjct: 260 VAAT-GANLVTVDAADTFLDALAGVTNPEGKRKIIGRHFIRAFEGAVRDIVGD--NASDG 316

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            G + L  G      +  G  G       +           +          L  PL  +
Sbjct: 317 SGVEFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPGDLTFKLVEPLRLL 367

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + RE+GL 
Sbjct: 368 FKDEVRAVGRELGLP 382


>gi|218890653|ref|YP_002439517.1| ORF_10; similar to Asparagine synthase [Pseudomonas aeruginosa
           LESB58]
 gi|20560076|gb|AAM27821.1|AF498417_10 ORF_10; similar to Asparagine synthase [Pseudomonas aeruginosa]
 gi|6690135|gb|AAF24002.1| WbpS [Pseudomonas aeruginosa]
 gi|218770876|emb|CAW26641.1| ORF_10; similar to Asparagine synthase [Pseudomonas aeruginosa
           LESB58]
          Length = 627

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDSS V AL+++     I    + ++        G      +   A+ V + I   
Sbjct: 279 LSGGVDSSTVVALMQQQSSRPI----RTFSIG--FDEPGY----DEAVYAKAVAEHIGTD 328

Query: 87  H 87
           H
Sbjct: 329 H 329


>gi|27502138|gb|AAO17418.1| asparagine synthase-like protein [Pseudomonas aeruginosa]
 gi|152926118|gb|ABS32238.1| lipopolysaccharide B-band O-antigen biosynthesis protein
           [Pseudomonas aeruginosa]
          Length = 627

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDSS V AL+++     I    + ++        G      +   A+ V + I   
Sbjct: 279 LSGGVDSSTVVALMQQQSSRPI----RTFSIG--FDEPGY----DEAVYAKAVAEHIGTD 328

Query: 87  H 87
           H
Sbjct: 329 H 329


>gi|18311901|ref|NP_558568.1| asparagine synthetase (asnB) [Pyrobaculum aerophilum str. IM2]
 gi|18159317|gb|AAL62750.1| asparagine synthetase (asnB) [Pyrobaculum aerophilum str. IM2]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVT--LQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            V  SGG+DS++V     + G   + V   ++                G D   A  V  
Sbjct: 13  AVLFSGGIDSTLVLTAAVKRGLMPLAVHVAMRN--------------CGVDTKYAVSVAA 58

Query: 82  TINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + V   V   D EE       +P          P+  V+C   V F   L    +LGA 
Sbjct: 59  KLGVPLAVRLMDLEEALGA---LPKVVKILGLFNPMEVVNC-AVVYFG--LEKALELGAK 112

Query: 140 VLATG 144
            + TG
Sbjct: 113 RVCTG 117


>gi|325297688|ref|YP_004257605.1| PP-loop domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317241|gb|ADY35132.1| PP-loop domain protein [Bacteroides salanitronis DSM 18170]
          Length = 255

 Score = 42.8 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  +++V +SGG DS  +  LL +        + V+     +                  
Sbjct: 27  EGDKILVGLSGGKDSLALLELLAKRSRIYKPRFSVVAAHVVMSNI------------AYE 74

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
            D    R   + + V      YE  F      P   +  +     PC     NR      
Sbjct: 75  SDTGYLRTFSEALGVPF--VGYEASF-----DPSTDTRKS-----PCFLCSWNRR---KA 119

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 120 LFTVAKEQGCNKIALGHH 137


>gi|322370487|ref|ZP_08045045.1| NAD+ synthetase [Haladaptatus paucihalophilus DX253]
 gi|320549904|gb|EFW91560.1| NAD+ synthetase [Haladaptatus paucihalophilus DX253]
          Length = 287

 Score = 42.8 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 39/181 (21%)

Query: 32  DSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYV 89
           DS++ A+L     G D V G+ L             +  A    +DA  V + + + +  
Sbjct: 61  DSTLAASLAVDALGPDRVFGLLL-----------PCNLTAEAGSHDALTVAEALGIDYRE 109

Query: 90  FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149
              +                         D +R  +   L + T +L    L      RS
Sbjct: 110 IHLQPL--VRCFEDLL-----------VGDEDRDERIRALGNATARLRMTCLYYAANTRS 156

Query: 150 RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
           +L +G   +  R++              + T          PL ++ K  VR LAR +GL
Sbjct: 157 KLVLGTGNRSERLL-------------GYFTKHGDGGCDLLPLANLYKTEVRALARHVGL 203

Query: 210 D 210
            
Sbjct: 204 P 204


>gi|307707499|ref|ZP_07643981.1| ExsB protein [Streptococcus mitis NCTC 12261]
 gi|307616451|gb|EFN95642.1| ExsB protein [Streptococcus mitis NCTC 12261]
          Length = 217

 Score = 42.8 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K+    V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKKHYETVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDMEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|254432047|ref|ZP_05045750.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001]
 gi|197626500|gb|EDY39059.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001]
          Length = 359

 Score = 42.8 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 24  VVAMSGGVDS-SVVAAL--LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VA+SGG DS ++VA L  L+R    + G TL L+       R  S    + +   +   
Sbjct: 39  LVAVSGGQDSMALVALLRDLRR----LHGWTLHLW-HGDHGWRPASGDQARQL---QAWA 90

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           +   +                     S A  E P+      R+ +++ LL+    LGA  
Sbjct: 91  EAEGLPF-------------------SLARWEQPVQDEASARSWRYASLLARATALGATR 131

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRP 166
           + TGH    R         R    R 
Sbjct: 132 VVTGHTASDRAETFLFNLARGSHRRG 157


>gi|146300008|ref|YP_001194599.1| asparagine synthetase B [Flavobacterium johnsoniae UW101]
 gi|146154426|gb|ABQ05280.1| asparagine synthase (glutamine-hydrolyzing) [Flavobacterium
           johnsoniae UW101]
          Length = 537

 Score = 42.8 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 32/175 (18%)

Query: 23  VVVAMSGGVD----SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V V +SGG+D    SSV + LLK +G             +  S   G      D   AR+
Sbjct: 222 VGVVLSGGLDTSLISSVASRLLKENG------------KKLPSFSIGLDADAPDNISARK 269

Query: 79  VCDTINVSHYVFDYE----ERFRNAVIV----PFASSYAAGETPLPCVDCNRTVKFSDLL 130
             + +   H+   +           VI         S  +G   +P    ++ +    + 
Sbjct: 270 AAEFLGTDHHEIHFTVKEGVEALEQVIASIETYDIISVRSG---VPMYLLSKAISEKGVK 326

Query: 131 SVTRQLGADVLATGH-YIRSRLYVGDDG----KRRRIMCRPMDLERDQSYFLFAT 180
            +    GAD +  GH Y R+     +      +R + +     L  D++      
Sbjct: 327 VILSGEGADEIFGGHLYFRNAPSTEEFQDETIERVQKLFTADLLRADKTTMANGI 381


>gi|331007034|ref|ZP_08330268.1| Queuosine Biosynthesis QueC ATPase [gamma proteobacterium IMCC1989]
 gi|330419161|gb|EGG93593.1| Queuosine Biosynthesis QueC ATPase [gamma proteobacterium IMCC1989]
          Length = 243

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 29/202 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           R V+ +SGG+DS+ V A+ +  GYD    TL        S   G     + V  A R+  
Sbjct: 24  RAVILVSGGLDSTTVLAIAQSQGYDC--YTL--------SFDYGQRHRAELVA-AERLSL 72

Query: 82  TINVSHY---VFDYEERFRNAVIVPFAS--SYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            +    +   + D      +A+          A+   P+  V    TV  S  L     L
Sbjct: 73  KMGAKEHKTVILDLRTIGGSALTDDAIDVPESASEGIPVTYVPARNTVFLSIALGWAEVL 132

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC----DLRFPL 192
           GA+ +  G          D        CR +D  +         T+  +      ++ PL
Sbjct: 133 GANDIFIGVNAVDYSGYPD--------CR-LDYIKAYEQMANLATKACVEGRPLRIQTPL 183

Query: 193 GDMKKESVRDLAREMGLDIADK 214
            D+ K  +     E+G+D A+ 
Sbjct: 184 IDLSKAEIIRQGVELGIDYAET 205


>gi|254490174|ref|ZP_05103365.1| exsB protein [Methylophaga thiooxidans DMS010]
 gi|224464660|gb|EEF80918.1| exsB protein [Methylophaga thiooxydans DMS010]
          Length = 223

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDV 47
           R V+ +SGG+DS+ V A+ K  GYD 
Sbjct: 2  KRAVILLSGGLDSATVLAIAKSQGYDC 28


>gi|219851843|ref|YP_002466275.1| PP-loop domain-containing protein [Methanosphaerula palustris
           E1-9c]
 gi|219546102|gb|ACL16552.1| PP-loop domain-containing protein [Methanosphaerula palustris
           E1-9c]
          Length = 265

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 43/209 (20%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGGVDSS++A + +     V      L +              +   +A  +    
Sbjct: 21  LIAFSGGVDSSLLAVIARE----V------LRDRMNCVLLDSPLLPRRSYREAIALAGEY 70

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   V  +    R+ ++               C  C +        +   +LG   +A 
Sbjct: 71  DLPLTVLSFSLLSRDDILRNSRDR---------CYFCKKGTA-ELFHNELVRLGFSGVAD 120

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G      + + D G+ R  +    +      +                   + K  +R +
Sbjct: 121 G------VNLSDYGEHRPGLIACEEEGILHPFVEAG---------------ITKPMIRAI 159

Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVV 232
           AR M L   +K  +   C   +  Y D +
Sbjct: 160 ARSMSLSFWNKPSA--ACLASRLPYGDEI 186


>gi|195332699|ref|XP_002033031.1| GM20632 [Drosophila sechellia]
 gi|226711421|sp|B4HSL7|CTU1_DROSE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194125001|gb|EDW47044.1| GM20632 [Drosophila sechellia]
          Length = 343

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V VA SGG DS+V+A +LK    R  Y   G+ L L +  +      +      + 
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLKLLNERHNY---GLELVLLSIDEG----ITGYRDDSLE 101

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             ++  D   +   +  YEE +    + ++         G +   C  C    +   L  
Sbjct: 102 TVKQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDR 153

Query: 132 VTRQLGADVLATGHYI 147
             + LG D +ATGH  
Sbjct: 154 GAKLLGVDSIATGHNA 169


>gi|194863280|ref|XP_001970365.1| GG10584 [Drosophila erecta]
 gi|226711417|sp|B3N7L9|CTU1_DROER RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|190662232|gb|EDV59424.1| GG10584 [Drosophila erecta]
          Length = 343

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V VA SGG DS+V+A +LK    R  Y   G+ L L +  +      +      + 
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLKLLNERHNY---GLELVLLSIDEG----ITGYRDDSLE 101

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             ++  D   +   +  YEE +    + ++         G +   C  C    +   L  
Sbjct: 102 TVKQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDR 153

Query: 132 VTRQLGADVLATGHYI 147
             + LG D +ATGH  
Sbjct: 154 GAKLLGVDSIATGHNA 169


>gi|189030688|sp|Q4A5Q7|THII_MYCS5 RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|144575142|gb|AAZ43914.2| thiamine biosynthesis protein [Mycoplasma synoviae 53]
          Length = 376

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
           +V+  +SGG DS V A LL + G+ V  +T 
Sbjct: 166 KVLHLISGGFDSPVAAYLLMKRGFKVDFLTF 196


>gi|71894517|ref|YP_278625.1| thiamine biosynthesis protein [Mycoplasma synoviae 53]
          Length = 380

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
           +V+  +SGG DS V A LL + G+ V  +T 
Sbjct: 170 KVLHLISGGFDSPVAAYLLMKRGFKVDFLTF 200


>gi|24651972|ref|NP_610451.1| CG8078 [Drosophila melanogaster]
 gi|122102795|sp|Q7JWW5|CTU1_DROME RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|7303947|gb|AAF58991.1| CG8078 [Drosophila melanogaster]
 gi|20976850|gb|AAM27500.1| LD03161p [Drosophila melanogaster]
 gi|220950426|gb|ACL87756.1| CG8078-PA [synthetic construct]
          Length = 343

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V VA SGG DS+V+A +LK    R  Y   G+ L L +  +      +      + 
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLKLLNERHNY---GLELVLLSIDEG----ITGYRDDSLE 101

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             ++  D   +   +  YEE +    + ++         G +   C  C    +   L  
Sbjct: 102 TVKQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDR 153

Query: 132 VTRQLGADVLATGHYI 147
             + LG D +ATGH  
Sbjct: 154 GAKLLGVDSIATGHNA 169


>gi|222823759|ref|YP_002575333.1| argininosuccinate synthetase [Campylobacter lari RM2100]
 gi|254807514|sp|B9KG97|ASSY_CAMLR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|222538981|gb|ACM64082.1| argininosuccinate synthetase [Campylobacter lari RM2100]
          Length = 406

 Score = 42.8 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S++   L+ + Y  +V+  T                  G+++  AR+
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YKSEVVTFT-------------ADIGQGEELEPARK 51

Query: 79  VCDTINVSHY---VFDYEERF-RNAVIVPFAS------SYAAGETPLPCVDCNRTVKFSD 128
              ++ V      + D ++ F ++ V   F +       Y  G          R +    
Sbjct: 52  KALSLGVKEENIFIKDLKDEFVKDYVFAMFRANAIYEGEYLLG------TSIARPLIAKA 105

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  +  AD ++ G
Sbjct: 106 LVEIANKTNADAISHG 121


>gi|317470972|ref|ZP_07930350.1| hypothetical protein HMPREF1011_00698 [Anaerostipes sp. 3_2_56FAA]
 gi|316901527|gb|EFV23463.1| hypothetical protein HMPREF1011_00698 [Anaerostipes sp. 3_2_56FAA]
          Length = 133

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 37/132 (28%)

Query: 23  VVVAMSGGVDSS-------VVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDV 73
           V +A SGGVDSS       + A   ++ G  V   T+  +L+ S  A             
Sbjct: 23  VALAFSGGVDSSLLLKLLCLAA---EKTGKKVAAFTMVTKLHPSGDA------------- 66

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSV 132
             A RV       H V   +E     ++            P   C  C R + ++ LL  
Sbjct: 67  KIAERVAGEAGAVHRVIHVDELSHAGIMDN----------PENRCYLCKRYL-YTKLLKS 115

Query: 133 TRQLGADVLATG 144
            + LG   +  G
Sbjct: 116 AKALGIQTVLEG 127


>gi|296446657|ref|ZP_06888598.1| asparagine synthase [Methylosinus trichosporium OB3b]
 gi|296255885|gb|EFH02971.1| asparagine synthase [Methylosinus trichosporium OB3b]
          Length = 562

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
           + RV   +SGG DS+++A L +  G +V+GVT
Sbjct: 185 EDRVACFLSGGTDSAIIAFLAREAGMNVVGVT 216


>gi|239939761|ref|ZP_04691698.1| succinoglycan biosynthesis regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 220

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 65/209 (31%), Gaps = 40/209 (19%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG+DS V+A  L  +G++V      L +     +        ++   AR   D I   
Sbjct: 5   VSGGLDSVVLAHHLHAEGHEV-----HLLSIDYGQR------HRKEHDYARIAADRIGAE 53

Query: 87  HYVFDYEERFRNAVIVPFASSYAAGET--PLPC----------VDCNRTVK-FSDLLSVT 133
           H + D         +      Y+  ++   +P           V  NR V   S      
Sbjct: 54  HEIVDLSN------VASMLPGYSLTDSQVDVPDQHYTAPGSVNVVPNRNVILLSVAYGKA 107

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
             + AD +A G          D           M+      Y            +  P  
Sbjct: 108 AAVKADQVAIGALAGDASTAPDCSAEFISSFNAMEKIACAGYAPAHLE------VVAPFI 161

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICF 222
           D+ K  V  L  ++G+D  +       CF
Sbjct: 162 DLHKHDVIRLGEKLGVDWTE----TWSCF 186


>gi|255713952|ref|XP_002553258.1| KLTH0D12584p [Lachancea thermotolerans]
 gi|238934638|emb|CAR22820.1| KLTH0D12584p [Lachancea thermotolerans]
          Length = 525

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 43/200 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V+ A+SGGVDS+V A L+       IG      L ++               + +A  V 
Sbjct: 226 VIGAVSGGVDSTVAAKLMTEA----IGERFHAILVDNG-----------VLRLNEAANVK 270

Query: 81  DTIN----VSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCV---DCNRTVKFSDLL 130
            T+     ++  V D  + F +    V  P       G T +            K  + +
Sbjct: 271 KTLGEGLKINLTVVDAADEFLDKLKGVTDPEKKRKIIGNTFIHVFEREAAKIQPKSGEEI 330

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               Q           I S  + G     +                +    +     L  
Sbjct: 331 EFLLQ----GTLYPDVIESISFKGPSQTIKTHHN------------VGGLLEDMKLKLIE 374

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL ++ K+ VR L   +G+ 
Sbjct: 375 PLRELFKDEVRHLGELLGIS 394


>gi|255940806|ref|XP_002561172.1| Pc16g08530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585795|emb|CAP93523.1| Pc16g08530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 341

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+AA+LK   + YD  G+ L L +  +  +          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLAAVLKTLNERYD-YGLDLCLLSIDEGIRGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLDILGYSELYGWTMDQVVE------QVGKKGN-CTYCGVFRR-QALDRGAARL 159

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 160 GIRHVVTGHNA 170


>gi|260786242|ref|XP_002588167.1| hypothetical protein BRAFLDRAFT_57433 [Branchiostoma floridae]
 gi|229273326|gb|EEN44178.1| hypothetical protein BRAFLDRAFT_57433 [Branchiostoma floridae]
          Length = 557

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVT--LQLYNSRKASKRKGSCCAGQDVYD 75
            + R+   +SGG+DSS++AALL K       G+T  +Q Y+               D+  
Sbjct: 248 SERRIGCLLSGGLDSSLIAALLTKNA--RKAGITYPIQTYSIGMEGSP--------DIAA 297

Query: 76  ARRVCDTINVSHYVFDYEER 95
           AR+V   I   H+       
Sbjct: 298 ARKVAKHIGSEHHEVGLTPE 317


>gi|152981386|ref|YP_001355128.1| hypothetical protein mma_3438 [Janthinobacterium sp. Marseille]
 gi|205830597|sp|A6T3N1|TTCA_JANMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|151281463|gb|ABR89873.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 31/142 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL-----LKRD---GYDVIGVTLQLYNSRKASKRK 64
           D +      +V+V +SGG DS   A L     L+      +D++ V L           +
Sbjct: 48  DFNMIEDGDKVMVCLSGGKDS--YALLDILMTLRERAPIKFDIVAVNL----------DQ 95

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                   +  A      +++  ++ + ++ +   ++         G+T   C  C+R +
Sbjct: 96  KQPNFPDHILPAYL--KQLDIPFHIEN-QDTYS--IVKRLIPE---GKT--TCSLCSR-L 144

Query: 125 KFSDLLSVTRQLGADVLATGHY 146
           +   L  V  +LGA+ +A GH+
Sbjct: 145 RRGILYRVADELGANKIALGHH 166


>gi|72161387|ref|YP_289044.1| NH(3)-dependent NAD(+) synthetase [Thermobifida fusca YX]
 gi|71915119|gb|AAZ55021.1| NH(3)-dependent NAD(+) synthetase [Thermobifida fusca YX]
          Length = 577

 Score = 42.8 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA +     G D V GV +                    V DA  + 
Sbjct: 323 VLLGLSGGIDSALVATIAVDALGADRVHGVLM-----------PSRYSTDHSVTDAEELA 371

Query: 81  DTINVSHYVF---DYEERFRNAV-IVPFASSYAAGE 112
               ++  +       E F NAV +   A       
Sbjct: 372 RRQGINARIIPVAPLVEAFENAVKVDGLAEENLQAR 407


>gi|241668228|ref|ZP_04755806.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876763|ref|ZP_05249473.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842784|gb|EET21198.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 400

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 43/203 (21%)

Query: 22  RVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +++  SGGVDSSV   LL   K      I + +  +N    + +    C        + 
Sbjct: 19  HIIIGYSGGVDSSV---LLDITKDLDIPTIAIYI-NHNIHPDALKWQLHC--------QT 66

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C+  N+               I         GE+           +    + +  Q  +
Sbjct: 67  ICNNANIDF-------------IAHSLDQAPKGESFE---AWASKQRMDFFIEIMSQYSS 110

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD--LRFPLGDMK 196
             L  GH++        D +    + + +      +        +QL    +  PL D  
Sbjct: 111 PTLLLGHHL--------DDQAETFLIQAI-RGSGLAGLASMPYYKQLNHGAVLRPLLDYT 161

Query: 197 KESVRDLAREMGLDIADKSDSQD 219
           K+ +++ A +  +      DS +
Sbjct: 162 KKDIQNYASQNKI-NHIYDDSNE 183


>gi|194014818|ref|ZP_03053435.1| ExsB protein [Bacillus pumilus ATCC 7061]
 gi|194013844|gb|EDW23409.1| ExsB protein [Bacillus pumilus ATCC 7061]
          Length = 218

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ + VV  SGG DS+       +   +V  VT              +    +++  A+R
Sbjct: 2  KNEKAVVVFSGGQDSTTCLLWALQQFEEVETVTFHY-----------NQRHQEEIDVAKR 50

Query: 79 VCDTINVSHYVFDYE 93
          + D + V +++ D  
Sbjct: 51 IADKLGVKNHLLDMS 65


>gi|168182490|ref|ZP_02617154.1| protein ExsB [Clostridium botulinum Bf]
 gi|237794900|ref|YP_002862452.1| exsB protein [Clostridium botulinum Ba4 str. 657]
 gi|259551497|sp|C3KVW4|QUEC_CLOB6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|182674375|gb|EDT86336.1| protein ExsB [Clostridium botulinum Bf]
 gi|229261676|gb|ACQ52709.1| exsB protein [Clostridium botulinum Ba4 str. 657]
          Length = 219

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        A+
Sbjct: 2  NKEKAIVV-FSGGQDSTTCLFWAKKKYKEVIAVS---FDYNQKHKLELEC--------AK 49

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+ H + D 
Sbjct: 50 DICKKYNIEHKILDL 64


>gi|157738264|ref|YP_001490948.1| ExsB family transcriptional regulator [Arcobacter butzleri
          RM4018]
 gi|189038892|sp|A8EWF5|QUEC_ARCB4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157700118|gb|ABV68278.1| transcriptional regulator, ExsB family [Arcobacter butzleri
          RM4018]
          Length = 228

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + +  +SGG+DS++ + + K+DG+++I V              G     +++   R +C
Sbjct: 7  KKAICILSGGMDSTLSSYIAKKDGFEIIAVHF----------NYGQRTQNRELKAFRDIC 56

Query: 81 DTINVS 86
          + +++ 
Sbjct: 57 NELDIK 62


>gi|157692044|ref|YP_001486506.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|189038896|sp|A8FCH9|QUEC_BACP2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157680802|gb|ABV61946.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 218

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ + VV  SGG DS+       +   +V  VT              +    +++  A+R
Sbjct: 2  KNEKAVVVFSGGQDSTTCLLWALQQFEEVETVTFHY-----------NQRHQEEIDVAKR 50

Query: 79 VCDTINVSHYVFDYE 93
          + D + V +++ D  
Sbjct: 51 IADKLGVKNHLLDMS 65


>gi|124485195|ref|YP_001029811.1| hypothetical protein Mlab_0368 [Methanocorpusculum labreanum Z]
 gi|124362736|gb|ABN06544.1| ExsB family protein [Methanocorpusculum labreanum Z]
          Length = 251

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 55/214 (25%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +VA+SGG DS  + A   ++G  V   T++                  +V  A      +
Sbjct: 14  LVALSGGTDSMTLLAAFVKEGGPVSAATIR-----------SEFTPPDEVTRAEHFARRL 62

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLP---CVDCNRTVKFSDLLSVTRQLGADV 140
            V+  V D     +                  P   C  C + +    +L          
Sbjct: 63  GVNWTVIDVSVLSKEN------------LRFNPQDRCYICKKLI-MKKMLEAADGK---T 106

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +  G +        DD    R   + +      S F               L  + K+ +
Sbjct: 107 VCDGTHA-------DDAAEERPGRKALKELGIVSPFA--------------LAGIGKKEI 145

Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
             LA+E+G+ +   S     C   +  + + +  
Sbjct: 146 YALAKELGVPVIPSS----SCLATRIPFGEKITE 175


>gi|21232444|ref|NP_638361.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66767473|ref|YP_242235.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|188990579|ref|YP_001902589.1| Putative transcriptional regulator, ExsB family [Xanthomonas
          campestris pv. campestris str. B100]
 gi|81306547|sp|Q4UXK8|QUEC_XANC8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81793141|sp|Q8P6F6|QUEC_XANCP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764391|sp|B0RPZ6|QUEC_XANCB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|21114225|gb|AAM42285.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66572805|gb|AAY48215.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|167732339|emb|CAP50531.1| Putative transcriptional regulator, ExsB family [Xanthomonas
          campestris pv. campestris]
          Length = 224

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + VV +SGG+DS+ V AL +  G+ V  +
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVHAL 31


>gi|16759402|ref|NP_455019.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142826|ref|NP_806168.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052897|ref|ZP_03345775.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427860|ref|ZP_03360610.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585097|ref|ZP_03366923.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647261|ref|ZP_03377314.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855373|ref|ZP_03383613.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825068|ref|ZP_06544420.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20140619|sp|Q8Z8X1|THII_SALTI RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|25513295|pir||AI0554 thiamin biosynthesis protein ThiI [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501693|emb|CAD08881.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138458|gb|AAO70028.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 482

 Score = 42.8 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 39/189 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DSSV + +L R G  V      L     A+   G           R+V   
Sbjct: 180 VLSLISGGFDSSVSSYMLMRRGCRVHYCFFNL---GGAAHEIG----------VRQVAHY 226

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +       +   +       V+         G+  +      + +       V  + G  
Sbjct: 227 LWNRFGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVL----KRMMVRAASKVAERYGVQ 282

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L TG  +      G    +     R +D   D               +  PL    KE 
Sbjct: 283 ALVTGEAL------GQVSSQTLTNLRLIDNVSD-------------TLILRPLISYDKEH 323

Query: 200 VRDLAREMG 208
           + +LAR++G
Sbjct: 324 IINLARQIG 332


>gi|47216854|emb|CAG11661.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 619

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 20  DMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             R+   +SGG+DSS V A L+K    + +   LQ ++               D+  AR+
Sbjct: 250 QRRIGCLLSGGLDSSLVSATLMKLAKEEKLQYPLQTFSIGSEDSP--------DLLAARK 301

Query: 79  VCDTINVSHYVFDYE 93
           V   I   H+  ++ 
Sbjct: 302 VAAYIGSEHHEVNFS 316


>gi|312623404|ref|YP_004025017.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203871|gb|ADQ47198.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 301

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 17/130 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  +++V +SGG DS +    +L  +GY+  G+ +      + S +              
Sbjct: 46  KKDKILVVISGGKDS-MALWHVLSSEGYNATGMYI-NLGIGEYSDKSQQV--------VE 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                  +   V D ++ +   +     S      T   C  C   +K      V    G
Sbjct: 96  NFAQKNGLELIVKDIKKEYGLDI--YKLSKLLKRST---CSICGS-IKRYLFNKVAYDGG 149

Query: 138 ADVLATGHYI 147
              +ATGH +
Sbjct: 150 FFAVATGHNL 159


>gi|307293825|ref|ZP_07573669.1| exsB protein [Sphingobium chlorophenolicum L-1]
 gi|306879976|gb|EFN11193.1| exsB protein [Sphingobium chlorophenolicum L-1]
          Length = 230

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS V   L +  GY V+ +      S   ++R        ++  A RV   +
Sbjct: 10 VVLLSGGLDSMVAGGLAREAGYRVLAL------SIDYNQR-----HRLELRAAGRVAAAL 58

Query: 84 N-VSHYVF 90
          N +SH V 
Sbjct: 59 NAISHIVL 66


>gi|291547033|emb|CBL20141.1| argininosuccinate synthase [Ruminococcus sp. SR1/5]
          Length = 410

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK    YDV+                 +C  G ++     
Sbjct: 4   KVVLAYSGGLD--TTALIPWLKETFDYDVVCC-------------CVNCGQGNELDGLEE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     Y+ D  + F +  I+P          SY  G +        R V    L+
Sbjct: 49  RAKMSGASKLYIEDIVDEFCDDFIMPCVEAGAVYEHSYLLGTSMA------RPVIAKKLV 102

Query: 131 SVTRQLGADVLATG 144
            + R+ GA  +  G
Sbjct: 103 EIARKEGAVAICHG 116


>gi|75760871|ref|ZP_00740884.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228905551|ref|ZP_04069500.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis IBL 4222]
 gi|74491633|gb|EAO54836.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854087|gb|EEM98796.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis IBL 4222]
          Length = 323

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRK 59
             S+  +   L L  N K+  +V+A SGG DS+    LLK   Y  +V+ VT        
Sbjct: 32  YTSDYKKPQDLGLKTNGKNYDIVLAYSGGKDSTYTLYLLKEK-YKLNVLAVTFDNGF--- 87

Query: 60  ASKRKGSCCAGQDVYDARRVCDTIN 84
                    A +   + R VC ++N
Sbjct: 88  --------LAEETYSNIRNVCASLN 104


>gi|320032845|gb|EFW14795.1| PP-loop ATPase superfamily protein [Coccidioides posadasii str.
           Silveira]
          Length = 431

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 25/195 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A++LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERYN-YGLDLVLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLEIVSYGELYGWTMDQVVA------EIGKKGN-CTYCGVFRR-QALDRGAAKL 159

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ-SYFLFATTQQQLCDLRFPLGDM 195
           G   + TGH                 + R       + +Y +  ++  ++   + PL   
Sbjct: 160 GIKHVVTGHNADDVAE-----TVMMNLLRGDLPRLARGTYIVTGSSASEIKRSK-PLKYA 213

Query: 196 KKESVRDLAREMGLD 210
            ++ +   A    LD
Sbjct: 214 YEKEIVLYAHHKNLD 228


>gi|257487000|ref|ZP_05641041.1| exsB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626506|ref|ZP_06459460.1| exsB protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650952|ref|ZP_06482295.1| exsB protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488199|ref|ZP_07006235.1| Queuosine Biosynthesis QueC ATPase [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298157257|gb|EFH98341.1| Queuosine Biosynthesis QueC ATPase [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320323042|gb|EFW79131.1| exsB protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329686|gb|EFW85675.1| exsB protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868622|gb|EGH03331.1| exsB protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330892250|gb|EGH24911.1| exsB protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330988979|gb|EGH87082.1| exsB protein [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009358|gb|EGH89414.1| exsB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|303322809|ref|XP_003071396.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240111098|gb|EER29251.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 431

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 25/195 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A++LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERYN-YGLDLVLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLEIVSYGELYGWTMDQVVA------EIGKKGN-CTYCGVFRR-QALDRGAAKL 159

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ-SYFLFATTQQQLCDLRFPLGDM 195
           G   + TGH                 + R       + +Y +  ++  ++   + PL   
Sbjct: 160 GIKHVVTGHNADDVAE-----TVMMNLLRGDLPRLARGTYIVTGSSASEIKRSK-PLKYA 213

Query: 196 KKESVRDLAREMGLD 210
            ++ +   A    LD
Sbjct: 214 YEKEIVLYAHHKNLD 228


>gi|213969195|ref|ZP_03397334.1| exsB protein [Pseudomonas syringae pv. tomato T1]
 gi|301384810|ref|ZP_07233228.1| exsB protein [Pseudomonas syringae pv. tomato Max13]
 gi|302130600|ref|ZP_07256590.1| exsB protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926193|gb|EEB59749.1| exsB protein [Pseudomonas syringae pv. tomato T1]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|205356493|ref|ZP_03223257.1| hypothetical protein Cj8421_0117 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345680|gb|EDZ32319.1| hypothetical protein Cj8421_0117 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 251

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +A LL R   +     ++  VTL        S     C        
Sbjct: 27  RVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTLSYGMGEDYSHLHTHC-------- 78

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                +   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 79  -----EEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 KGFNKLAIAHHL 136


>gi|160931446|ref|ZP_02078842.1| hypothetical protein CLOLEP_00279 [Clostridium leptum DSM 753]
 gi|156869511|gb|EDO62883.1| hypothetical protein CLOLEP_00279 [Clostridium leptum DSM 753]
          Length = 269

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 74/267 (27%), Gaps = 73/267 (27%)

Query: 19  KDMRVVVAMSGGVDSS------------------VVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  R+ V +SGG DS                   V A                       
Sbjct: 50  EGDRIAVGVSGGKDSLVLLCALAALREFYPSRFEVAAL---------------------- 87

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
           +          D      +C  + V +++     +    +      +        PC  C
Sbjct: 88  TADPQFHGEPADYSQIEELCRRLGVPYHIR--RTQLGRIIFEDRKEA-------NPCSLC 138

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              ++   L ++ ++ G + LA GH+        DD      M        D        
Sbjct: 139 -ARMRRGILHNMAKEAGCNKLALGHH-------YDDAVETFFMNLFNSGSLDCFSPKSYL 190

Query: 181 TQQQLCDLRFPL---GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237
           ++++L  L  PL   G+     V   A    L +         C           K + A
Sbjct: 191 SRKEL-WLIRPLVFCGE---RQVAAAANRCHLPVVKSE-----CPADGSTSRQKTKELIA 241

Query: 238 GIALEGDIVHLNGQILG--RHNGIINY 262
            +  +     L  +++G     GI ++
Sbjct: 242 RLEKDYP--DLKSKVMGAVERAGIAHW 266


>gi|119189797|ref|XP_001245505.1| hypothetical protein CIMG_04946 [Coccidioides immitis RS]
          Length = 1673

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 25/195 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A++LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERYN-YGLDLVLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLEIVSYGELYGWTMDQVVA------EIGKKGN-CTYCGVFRR-QALDRGAAKL 159

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ-SYFLFATTQQQLCDLRFPLGDM 195
           G   + TGH                 + R       + +Y +  ++  ++   + PL   
Sbjct: 160 GIKHVVTGHNADDVAE-----TVMMNLLRGDLPRLARGTYIVTGSSASEIKRSK-PLKYA 213

Query: 196 KKESVRDLAREMGLD 210
            ++ +   A    LD
Sbjct: 214 YEKEIVLYAHHKNLD 228


>gi|329119214|ref|ZP_08247901.1| NAD+ synthetase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464561|gb|EGF10859.1| NAD+ synthetase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 264

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDV 47
           V +SGGVDS+VV+AL  R G DV
Sbjct: 27 AVGVSGGVDSAVVSALAARSGLDV 50


>gi|283781603|ref|YP_003372358.1| argininosuccinate synthase [Pirellula staleyi DSM 6068]
 gi|283440056|gb|ADB18498.1| argininosuccinate synthase [Pirellula staleyi DSM 6068]
          Length = 404

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQ--DVYDAR- 77
           V+A SGG+D+SV+   L+ +GY+V  V + L      R+A  +K   C  +   + DA+ 
Sbjct: 5   VLAYSGGLDTSVILGWLQDEGYEVHAVYVDLGQPCEDRQAILKKARDCGAKSSQIVDAQE 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C        V  ++ ++           Y  G          R +     L + R LG
Sbjct: 65  ELCRDFAFP--VMQFQAKYEGW--------YLLG------TSIARPLISKVCLQIARDLG 108

Query: 138 ADVLATG 144
           A   A G
Sbjct: 109 AVAYAHG 115


>gi|331016449|gb|EGH96505.1| exsB protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|213964802|ref|ZP_03393001.1| GMP synthase [glutamine-hydrolyzing] [Corynebacterium amycolatum
           SK46]
 gi|213952338|gb|EEB63721.1| GMP synthase [glutamine-hydrolyzing] [Corynebacterium amycolatum
           SK46]
          Length = 524

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 57/190 (30%), Gaps = 20/190 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R +  +SGGVDS+V AAL++R  G  +  V            R+G     +   D   V 
Sbjct: 222 RAICGLSGGVDSAVAAALVQRAIGDRLTCVF-----VDHGLLRQGEREQVE--KD--FVA 272

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            T        D  + F +A+                 +          L         D 
Sbjct: 273 AT-GAKLITVDDSKVFLDALAGITDPETKRKTIGREFIRSFERAVAQALEGAPEGETVDF 331

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           L  G      +  G  G       +           +          L  PL  + K+ V
Sbjct: 332 LVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDDVEFTLVEPLRLLFKDEV 382

Query: 201 RDLAREMGLD 210
           R + RE+GL 
Sbjct: 383 RAVGRELGLP 392


>gi|77361211|ref|YP_340786.1| argininosuccinate synthase [Pseudoalteromonas haloplanktis TAC125]
 gi|119361309|sp|Q3IHT8|ASSY_PSEHT RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|76876122|emb|CAI87344.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 400

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S +   LK + G +VI                G      +  +A+ +
Sbjct: 5   KKVVLAYSGGLDTSAIVPWLKENYGCEVIAF----------VADVGQGAEELEGVEAKAI 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   YV D ++   +  I P          +Y  G +    +     V       +
Sbjct: 55  ASGAS-ECYVVDLKDEMVSDYIYPTLKTGSIYEGTYLLGTSMARPIIAKAQV------EI 107

Query: 133 TRQLGADVLATG 144
            R++GAD L+ G
Sbjct: 108 ARKVGADALSHG 119


>gi|50292393|ref|XP_448629.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608911|sp|Q6FMB5|CTU1_CANGA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|49527941|emb|CAG61592.1| unnamed protein product [Candida glabrata]
          Length = 358

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V +  SGG DS+V+A +LK   D +D  GV L L +  +             +   
Sbjct: 66  RGEKVAIGASGGKDSTVLAHILKLLNDRHD-YGVKLVLLSIDEG----IVGYRDDSLATV 120

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA-GETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R      +   +  + + +             A       C  C    +   L     +
Sbjct: 121 KRNQKQYQLPLEIVSFRDLY-----DWTMDEIVAIAGIRNSCTYCGVFRR-QALDRGAAK 174

Query: 136 LGADVLATGHYI 147
           L  + + TGH  
Sbjct: 175 LDINHVVTGHNA 186


>gi|317026023|ref|XP_001388768.2| cytoplasmic tRNA 2-thiolation protein 1 [Aspergillus niger CBS
           513.88]
          Length = 415

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+AA+LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLAAVLKTLNERYN-YGLDLCLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               N+   +  Y + +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AQQYNMPLVIVSYGDLYGWTMDQVVA------QVGKKGN-CTYCGVFRR-QALDRGAAKL 159

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 160 GIKHVVTGHNA 170


>gi|302381575|ref|YP_003817398.1| argininosuccinate synthase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192203|gb|ADK99774.1| argininosuccinate synthase [Brevundimonas subvibrioides ATCC 15264]
          Length = 411

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+     +V+  T                  G+++  AR  
Sbjct: 10  KKVVLAYSGGLDTSIILKWLQTEYNAEVVTFT-------------ADLGQGEELAPAREK 56

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
              + +     ++ D  E F    + P           Y  G +    +   R +     
Sbjct: 57  ALKMGIKPENIFIDDLREEFVRDFVFPMFRANALYEGQYLLGTSIARPLIAKRQI----- 111

Query: 130 LSVTRQLGADVLATG 144
             + R +GAD +  G
Sbjct: 112 -EIARMVGADAVCHG 125


>gi|226711412|sp|A2Q879|CTU1_ASPNC RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|134054862|emb|CAK36876.1| unnamed protein product [Aspergillus niger]
          Length = 341

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+AA+LK   + Y+  G+ L L +  +  K          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLAAVLKTLNERYN-YGLDLCLLSIDEGIKGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               N+   +  Y + +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AQQYNMPLVIVSYGDLYGWTMDQVVA------QVGKKGN-CTYCGVFRR-QALDRGAAKL 159

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 160 GIKHVVTGHNA 170


>gi|118616681|ref|YP_905013.1| GMP synthase [Mycobacterium ulcerans Agy99]
 gi|118568791|gb|ABL03542.1| GMP synthase, GuaA [Mycobacterium ulcerans Agy99]
          Length = 527

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG 49
           D   +  +SGGVDS+V AAL++R    VIG
Sbjct: 227 DGHAICGLSGGVDSAVAAALVQR----VIG 252


>gi|28871113|ref|NP_793732.1| exsB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|81730072|sp|Q87Y44|QUEC_PSESM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|28854363|gb|AAO57427.1| exsB protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 226

 Score = 42.8 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 5  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 53

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 54 ARDLGAVEHKVI 65


>gi|330964834|gb|EGH65094.1| exsB protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|330872643|gb|EGH06792.1| exsB protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
          Length = 229

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|331002999|ref|ZP_08326511.1| hypothetical protein HMPREF0491_01373 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413043|gb|EGG92418.1| hypothetical protein HMPREF0491_01373 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 382

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 34/133 (25%)

Query: 22  RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ V +SGG DS ++A L +         ++++ + +                   D+  
Sbjct: 145 KIAVCISGGKDSMLMAKLFQELLKHGKRNFELVFLVM--------------NPGYDDINY 190

Query: 76  ARRV--CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              V     ++V              V         A +   PC  C   ++   L +  
Sbjct: 191 RTIVDNAKLLDVPIV-----------VFESSIYDIVAEDEKSPCYLC-ARMRRGHLYAKA 238

Query: 134 RQLGADVLATGHY 146
           ++LG + +A GH+
Sbjct: 239 KELGCNKIALGHH 251


>gi|317125592|ref|YP_004099704.1| hypothetical protein Intca_2470 [Intrasporangium calvum DSM 43043]
 gi|315589680|gb|ADU48977.1| hypothetical protein Intca_2470 [Intrasporangium calvum DSM 43043]
          Length = 296

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 60/198 (30%), Gaps = 52/198 (26%)

Query: 25  VAMSGGVDSSVVAALLKRD-GYD----VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           VA SGGVDS ++ AL  R  G +    VIGV                  A  +++ AR V
Sbjct: 42  VAFSGGVDSGLLLALAIRTLGAERVLAVIGV--------------SPSLARDELHGARDV 87

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
              I     V +      +         Y A   P  C  C   +       V  + G  
Sbjct: 88  AAAIGAP--VVEVATHEGDH------PRYRANG-PDRCFFCKDELFTRITDEVAGRHGLV 138

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKK 197
            +A G            G R                            +  PL D  + K
Sbjct: 139 AVAYGENADDARRPDRPGARAATNH----------------------HVLRPLADAGLGK 176

Query: 198 ESVRDLAREMGLDIADKS 215
             VR LAR + L  ADK 
Sbjct: 177 SDVRALARGLRLPNADKP 194


>gi|299133610|ref|ZP_07026804.1| NAD+ synthetase [Afipia sp. 1NLS2]
 gi|298591446|gb|EFI51647.1| NAD+ synthetase [Afipia sp. 1NLS2]
          Length = 584

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ +SGG+DS++  A+      D IGV        +         A + + DA R+   
Sbjct: 295 VLLGISGGIDSALCLAIAV----DAIGV-----ERVRGVMLPFRFTAKESIEDAARIARG 345

Query: 83  INVSHYV------FDYEERFRNAVIV----PFASSYAAGETPLPCVDCNRTVKFSDLL 130
           + + + V       +  E     V                T    +      KF D+L
Sbjct: 346 LGIRYDVLPIAAAVNGFEDILKDVFNGKPRDVTEENLQARTRGVLLMAISN-KFGDML 402


>gi|300023353|ref|YP_003755964.1| NAD+ synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525174|gb|ADJ23643.1| NAD+ synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 575

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 17/75 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL--QLYNSRKASKRKGSCCAGQDVYDARR 78
           VV+ +SGG+DS++VAA+     G D V  V L  +  +                + DA  
Sbjct: 283 VVLGLSGGIDSALVAAIAVDALGPDRVHAVMLPSKFTSDDS-------------LQDAAE 329

Query: 79  VCDTINVSHYVFDYE 93
               + + +     E
Sbjct: 330 CAKALGIRYDKVSIE 344


>gi|227485431|ref|ZP_03915747.1| GMP synthase (glutamine-hydrolyzing) [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236561|gb|EEI86576.1| GMP synthase (glutamine-hydrolyzing) [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 529

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 36/194 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++  +SGGVDSSV A ++ +     IG  LQ         RK           A+ V +
Sbjct: 236 KMICGLSGGVDSSVAATIVSKA----IGDKLQCIFVDHGLLRKDE---------AKSVME 282

Query: 82  ---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137
               + ++  + D  + F +          +  ET    +  N  V         +++ G
Sbjct: 283 TYKNLGLNVKMVDKSKEFLD-----LLKGVSDPETK-RKIIGNHFV--EVFEEEAKKIGG 334

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMK 196
           A  L  G        V + GK +  + +           +    +      L  PL  + 
Sbjct: 335 ASYLVQG---TIYPDVIESGKDKASVIKSHHN-------VGGLPEDMDFKGLVEPLRMLF 384

Query: 197 KESVRDLAREMGLD 210
           K+ VR +   +G+ 
Sbjct: 385 KDEVRAVGEAIGIP 398


>gi|114678754|ref|XP_001174153.1| PREDICTED: ATP binding domain 3 [Pan troglodytes]
          Length = 348

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++LQL     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRALAPR-LGISLQL----VAVDEGIGGYRDAALATVRRQAAR 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  YE+ F    +   A S A +G +   C  C   ++   L    R++GA  +
Sbjct: 109 WELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCG-VLRRRALEEGARRVGATHI 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1]
 gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1]
          Length = 324

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 7  TRLNS----LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
          T  NS    + +D  P +  V V  SGG DS+ +  +L++ GY V       ++     +
Sbjct: 3  TPFNSVAGRMQMDGLPAE--VAVGWSGGADSTALLLMLQQQGYRVQA-----WHVDHGWR 55

Query: 63 RKGSCCAGQDVYDAR 77
                       AR
Sbjct: 56 ESSIKETELLAEKAR 70


>gi|331013475|gb|EGH93531.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|330974376|gb|EGH74442.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|330949806|gb|EGH50066.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           Cit 7]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|289677052|ref|ZP_06497942.1| hypothetical protein PsyrpsF_27458 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|228993379|ref|ZP_04153295.1| thiamine biosynthesis protein thiI [Bacillus pseudomycoides DSM
           12442]
 gi|228766447|gb|EEM15090.1| thiamine biosynthesis protein thiI [Bacillus pseudomycoides DSM
           12442]
          Length = 403

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAFLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|228999432|ref|ZP_04159011.1| thiamine biosynthesis protein thiI [Bacillus mycoides Rock3-17]
 gi|228760377|gb|EEM09344.1| thiamine biosynthesis protein thiI [Bacillus mycoides Rock3-17]
          Length = 403

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V A L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVAAFLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|167854751|ref|ZP_02477530.1| thiamine biosynthesis protein ThiI [Haemophilus parasuis 29755]
 gi|167854165|gb|EDS25400.1| thiamine biosynthesis protein ThiI [Haemophilus parasuis 29755]
          Length = 483

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 50/234 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHGIGVKQMAYHIWSRYSSSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  +   
Sbjct: 240 VA---------INF-----ENVVGEILEKVDNGQMGVVL----KRMMVRAASKIAERFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDKTSD-------------TLVLRPLITHDKE 322

Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            +  +A+E+G    D + S         ++  V+ +     A+E  I+   G  
Sbjct: 323 QIIAMAKEIG--TDDIAKSM-------PEFCGVISKNPTVKAIESKIIEEEGNF 367


>gi|71737240|ref|YP_275868.1| C32 tRNA thiolase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485919|ref|ZP_05639960.1| hypothetical protein PsyrptA_21801 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289627103|ref|ZP_06460057.1| hypothetical protein PsyrpaN_18494 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648114|ref|ZP_06479457.1| hypothetical protein Psyrpa2_10249 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487955|ref|ZP_07005994.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|123635491|sp|Q48FG8|TTCA_PSE14 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71557793|gb|AAZ37004.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157506|gb|EFH98587.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323411|gb|EFW79499.1| C32 tRNA thiolase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327607|gb|EFW83619.1| C32 tRNA thiolase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330866036|gb|EGH00745.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330876302|gb|EGH10451.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330889410|gb|EGH22071.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330986729|gb|EGH84832.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|66046934|ref|YP_236775.1| C32 tRNA thiolase [Pseudomonas syringae pv. syringae B728a]
 gi|75501097|sp|Q4ZQ35|TTCA_PSEU2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|63257641|gb|AAY38737.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|466934|gb|AAC43222.1| guaA [Mycobacterium leprae]
          Length = 590

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 63/203 (31%), Gaps = 42/203 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +   +  +SGGVDS+V AAL++R     IG  +T    +       +             
Sbjct: 286 NGHAICGLSGGVDSAVAAALVQRA----IGDRLTCIFVDHGLLRDGERGQVQRDF----- 336

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVK-----FSD 128
            V  T        D  E F  A          +G T  P     +   + ++       D
Sbjct: 337 -VAAT-GAKLVTVDAAETFLQA---------LSGVT-NPEGKRKIIGRQFIRAFEGAVRD 384

Query: 129 LL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           LL   T   G + L  G      +  G  G       +           +          
Sbjct: 385 LLGDSTFDSGIEFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDNLRFK 435

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + R++ L 
Sbjct: 436 LVEPLRLLFKDEVRAVGRQLDLP 458


>gi|330959275|gb|EGH59535.1| exsB protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 187

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ + +GY     T+        S   G     + +  A RV
Sbjct: 8  EKRAVILLSGGLDSATVVAMARAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|307266314|ref|ZP_07547854.1| GMP synthase, large subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918692|gb|EFN48926.1| GMP synthase, large subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 512

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V A+SGGVDSSV A L+ R  +D ++ +     ++    K +G             
Sbjct: 217 KHKAVCALSGGVDSSVAAVLVDRAIHDQLVCIF---VDTGLLRKNEGDMVIETFR----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D  +RF + +                 +  N  +          ++G 
Sbjct: 269 --KNYDMNIIRVDARDRFLSRLKGVTDPEEKRK------IIGNVFI--EVFKEEALKIGD 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        V + G       +           +    +    +L  PL  + K
Sbjct: 319 VKFLVQG---TLYPDVIESGNGVSSTIKSHHN-------VGGLPEDIGFELIEPLRMLFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+G+ 
Sbjct: 369 DEVRQVGKELGIP 381


>gi|302872795|ref|YP_003841431.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575654|gb|ADL43445.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 235

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 50/216 (23%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--------KRDGYDVIGVTLQLYNSRKASKRK 64
           D +      ++ V +S G DS  +   L        K+  +DV+ +T             
Sbjct: 14  DFEMIEDGDKIAVGVSAGKDSLTMLYTLSFMRRFYPKK--FDVVAIT------------V 59

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D    +  CD INV  ++     + +  V               PC  C   +
Sbjct: 60  DMGFESMDFLPIKEFCDKINVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANL 109

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +   L S  + LG + +A GH++       DD      +    +           + +  
Sbjct: 110 RRGILNSTAKSLGCNKVALGHHL-------DDVVETFFLSLFFEGR-----IYCFSPKTY 157

Query: 185 LCDL----RFPLGDMKKE-SVRDLAREMGLDIADKS 215
           L         P+    KE  +R  A+++ L +    
Sbjct: 158 LDRTQITVIRPM-IYVKEHELRSAAKKLELPVITNP 192


>gi|225677747|gb|EEH16031.1| GMP synthase [Paracoccidioides brasiliensis Pb03]
          Length = 658

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+K      IG                       + +A  
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMKEA----IG---------DRFHAVLVDNGVLRLNEAAI 280

Query: 79  V----CDTINVSHYVFDYEERF 96
           V       + V+  V D  ERF
Sbjct: 281 VKETLTRHLGVNLTVVDASERF 302


>gi|14520567|ref|NP_126042.1| hypothetical protein PAB0226 [Pyrococcus abyssi GE5]
 gi|5457783|emb|CAB49273.1| thiI thiamin biosynthesis protein thiI [Pyrococcus abyssi GE5]
          Length = 198

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 60/211 (28%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+VV  +S G+DS V   L+   G +V  +  +        + K            RR+ 
Sbjct: 1   MKVVALLSSGIDSPVAIHLVASKGAEVYPLHFK---QDDVKENK-----------VRRIV 46

Query: 81  DTINVSHYVFDYEERFRNAVIVP-FASSYAAGETPLPCVDCNRTV---KFSDLLS----- 131
             +         +E   + V  P    ++       P  +  R +   K++ +       
Sbjct: 47  KRL---------QEIHGDKVKDPRIVDAFEVQG---PVFEKLREIRKEKWTCIFCKYTMY 94

Query: 132 -----VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
                  R++ A  + TG  +        D     +M    +L                 
Sbjct: 95  IVATSYAREIKAKAIVTGDSLGQVASQTLD--NLMVMSTATELP---------------- 136

Query: 187 DLRFPLGDMKKESVRDLAREMG-LDIADKSD 216
            +  PL  + KE +  +A+E+G  DI+ + +
Sbjct: 137 -ILRPLIALDKEEIVRIAKEIGTFDISTEKE 166


>gi|307298188|ref|ZP_07577992.1| NAD+ synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916274|gb|EFN46657.1| NAD+ synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 279

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 24 VVAMSGGVDSSVVAALLKRD-GYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          V+ +SGG+DS+VV  L     G + I G+ +     R +S+          + D++ V  
Sbjct: 21 VIGISGGIDSAVVGKLAVEALGKEKIFGLLM---PERDSSRDT--------IRDSKLVAK 69

Query: 82 TINVSHYVFDYE 93
           + +   V +  
Sbjct: 70 FLGIDFKVKNIS 81


>gi|296132467|ref|YP_003639714.1| exsB protein [Thermincola sp. JR]
 gi|296031045|gb|ADG81813.1| exsB protein [Thermincola potens JR]
          Length = 225

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 77/216 (35%), Gaps = 43/216 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV +SGG+DS+V  ++ ++ GY+   +    +   +   R+  C        A++V +
Sbjct: 3   KAVVLLSGGLDSTVCMSVAQKQGYE---LYPISFLYGQRHSREIEC--------AKKVAE 51

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--------------RTVKF- 126
              V  ++          +     S   +  T    V                 R + F 
Sbjct: 52  YYQVKKHLI---------ITTNMDSIGGSALTANIDVPEGDENRSEIPVTYVPARNLIFL 102

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186
           S  L     +GA+ +  G  + +  Y G    R   + R   L  D S       ++++ 
Sbjct: 103 SYALGYAEVIGAEKIFIG--VNAVDYSGYPDCRPEFIERFQQLA-DYSTKAATQDKREI- 158

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222
            +  PL ++ K  +     ++G+      +    C+
Sbjct: 159 KIEAPLLNLTKAEIV----KLGVANKAPLELTTSCY 190


>gi|255031007|ref|ZP_05302958.1| GMP synthase [Listeria monocytogenes LO28]
          Length = 118

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
          D +V++A+SGGVDSSVV  L+ +  G  +  + 
Sbjct: 20 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF 52


>gi|226295086|gb|EEH50506.1| GMP synthase [Paracoccidioides brasiliensis Pb18]
          Length = 548

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+K      IG                       + +A  
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMKEA----IG---------DRFHAVLVDNGVLRLNEAAI 280

Query: 79  V----CDTINVSHYVFDYEERF 96
           V       + V+  V D  ERF
Sbjct: 281 VKETLTRHLGVNLTVVDASERF 302


>gi|198282708|ref|YP_002219029.1| Argininosuccinate synthase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666840|ref|YP_002424900.1| argininosuccinate synthase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247229|gb|ACH82822.1| Argininosuccinate synthase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519053|gb|ACK79639.1| argininosuccinate synthase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 399

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 3   KKVVLAYSGGLDTSVILKWLQDQ-YQCDVVTF-----------TADIGQGEELEPARAKA 50

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAG 111
           + +     ++ D  + F    + P           Y  G
Sbjct: 51  EKLGAREIFIDDLRQEFVRDYVFPMFRANTLYEGEYLLG 89


>gi|328950181|ref|YP_004367516.1| exsB protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450505|gb|AEB11406.1| exsB protein [Marinithermus hydrothermalis DSM 14884]
          Length = 233

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 36/240 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + V  +SGG+DS+  AA    DGY+VI ++                   +++  A+ V
Sbjct: 2   KPKAVALLSGGLDSATAAAQALADGYEVIALSFAY-----------GQRHTRELTAAKEV 50

Query: 80  CDTINV-SHYV--FDYEERFRNAVIVPFASSYAAGETPL---PCVDCNRTVKF-SDLLSV 132
              + +  HYV   +  +   +A+  P       G  P    P     R   F +  LS+
Sbjct: 51  AKALGIQEHYVLEVNLAQWGGSALTDPTIQVPTGGVNPEVIPPTYVPGRNTVFLAIALSL 110

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT---QQQLCDLR 189
               GA+ +  G          D        CRP  LE  Q     AT    + Q   L 
Sbjct: 111 AEARGAEAIYLGINAVDYSGYPD--------CRPEYLEAFQRLANLATKAGLEGQAPRLV 162

Query: 190 FPLGDMKKESVRDLAREMGLDIADK-------SDSQDICFVQQGKYFDVVKRINAGIALE 242
            PL    K  +   A  +G+ I           +   +C   + +   +++     +A  
Sbjct: 163 APLVMDTKADIVRRALALGVPIERTWSCYQGGEEPCGLCDSCRIRDRALIEAGRPDLATP 222


>gi|315186649|gb|EFU20408.1| asparagine synthase [Spirochaeta thermophila DSM 6578]
          Length = 292

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 52/199 (26%)

Query: 22  RVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+ V  SGGVDS   +VVA        +V+G      ++ +A        A  +  +A  
Sbjct: 39  RIAVGFSGGVDSTFLAVVAR-------EVLG-----KDAVRAYTLLPPHVARWEAAEAAE 86

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +    ++ H + +           PF         P  C  C + + F  +  +  + G 
Sbjct: 87  LARRFDLPHRLIEV----------PFVEEVRE-NPPDRCYRC-KRILFGAIKRMAEEDGY 134

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
            V+  G          D  + R  M    +L                  +R PL    + 
Sbjct: 135 PVVCDG------TNASDPEEDRPGMRALRELG-----------------VRSPLREAGLT 171

Query: 197 KESVRDLAREMGLDIADKS 215
           KE +RDL+R  GL   DK 
Sbjct: 172 KERIRDLSRAFGLPTWDKP 190


>gi|302518666|ref|ZP_07271008.1| NAD(+) synthase [Streptomyces sp. SPB78]
 gi|302427561|gb|EFK99376.1| NAD(+) synthase [Streptomyces sp. SPB78]
          Length = 586

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 22/91 (24%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G + V GV++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALTAAIACDAIGAENVYGVSM-----------PSKYSSEHSKDDAADLA 376

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAG 111
               +          +R+A I P   +Y A 
Sbjct: 377 ARTGL---------HYRSAPIAPMFDAYMAA 398


>gi|301170225|emb|CBW29829.1| sulfurtransferase required for thiamine and 4-thiouridine
           biosynthesis [Haemophilus influenzae 10810]
          Length = 485

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSSS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|227541810|ref|ZP_03971859.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182253|gb|EEI63225.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 609

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 58/195 (29%), Gaps = 30/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AA+++R  G  +  V     +       +        V     
Sbjct: 309 DGRAICGLSGGVDSAVAAAIVQRAIGDRLTCVF---VDHGLLRAGERQQVEEDFV----- 360

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                       D  E F +           AG T           +F            
Sbjct: 361 --KATGAKLVTVDESEAFLSK---------LAGVTEPEAKRKAIGAEFIRSFERAVAGVL 409

Query: 139 DVLATGHYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D    G  ++  LY   V   G       +           +         +L  PL  +
Sbjct: 410 DGQDVGFLVQGTLYPDVVESGGGSGTANIKSHHN-------VGGLPDDVEFELVEPLRLL 462

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + RE+GL 
Sbjct: 463 FKDEVRAVGRELGLP 477


>gi|171185766|ref|YP_001794685.1| thiamine biosynthesis protein ThiI [Thermoproteus neutrophilus
           V24Sta]
 gi|170934978|gb|ACB40239.1| thiamine biosynthesis/tRNA modification protein ThiI [Thermoproteus
           neutrophilus V24Sta]
          Length = 475

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDV 47
            + +V+  +SGG+DS V A +L R G  V
Sbjct: 170 SEGKVLALVSGGIDSPVAAWMLMRRGAHV 198


>gi|134299319|ref|YP_001112815.1| NAD+ synthetase [Desulfotomaculum reducens MI-1]
 gi|134052019|gb|ABO49990.1| NH(3)-dependent NAD(+) synthetase [Desulfotomaculum reducens MI-1]
          Length = 635

 Score = 42.8 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)

Query: 9   LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           L+S+ +       +VV+ +SGG+DS+V AAL    
Sbjct: 317 LSSIGM------KKVVIGISGGIDSAVSAALYADA 345


>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
 gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
          Length = 524

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 48/204 (23%)

Query: 23  VVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV A+SGG DS V    LLK  G++ I                    + ++    + + +
Sbjct: 28  VVAAVSGGGDS-VALLYLLKALGFEAIVAHF---------DHALRPSSAEEAVWVQHLAE 77

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            +     V       R  V         A           R ++++ L  V ++   + +
Sbjct: 78  ALGYPCEVT------RVEV------QRVAQRKKRNLEATARELRYAFLSRVAKKYRTEAI 125

Query: 142 ATGHYIRSRLYVGDDGKRRRIMC------RPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            T H         DD     ++       R   + + Q              +  PL   
Sbjct: 126 LTAH-------TQDDQAETVLLQLVRGTGRATGIRKRQ------------GRVVRPLLGF 166

Query: 196 KKESVRDLAREMGLDIADKSDSQD 219
            +  +R   R  G    +   +QD
Sbjct: 167 TRAELRGYLRAKGASWLEDPTNQD 190


>gi|15827120|ref|NP_301383.1| GMP synthase [Mycobacterium leprae TN]
 gi|221229598|ref|YP_002503014.1| GMP synthase [Mycobacterium leprae Br4923]
 gi|13638206|sp|P46810|GUAA_MYCLE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800107|sp|B8ZUE2|GUAA_MYCLB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13092668|emb|CAC29903.1| putative GMP synthase [Mycobacterium leprae]
 gi|219932705|emb|CAR70488.1| putative GMP synthase [Mycobacterium leprae Br4923]
          Length = 529

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 63/203 (31%), Gaps = 42/203 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +   +  +SGGVDS+V AAL++R     IG  +T    +       +             
Sbjct: 225 NGHAICGLSGGVDSAVAAALVQRA----IGDRLTCIFVDHGLLRDGERGQVQRDF----- 275

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC----VDCNRTVK-----FSD 128
            V  T        D  E F  A          +G T  P     +   + ++       D
Sbjct: 276 -VAAT-GAKLVTVDAAETFLQA---------LSGVT-NPEGKRKIIGRQFIRAFEGAVRD 323

Query: 129 LL-SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           LL   T   G + L  G      +  G  G       +           +          
Sbjct: 324 LLGDSTFDSGIEFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDNLRFK 374

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL  + K+ VR + R++ L 
Sbjct: 375 LVEPLRLLFKDEVRAVGRQLDLP 397


>gi|322820903|gb|EFZ27387.1| hypothetical protein TCSYLVIO_6411 [Trypanosoma cruzi]
          Length = 329

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 22/132 (16%)

Query: 23  VVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V    SGG DS+V+  L+K    R GYDV  + L +           +      +    R
Sbjct: 55  VACGASGGKDSTVLMHLMKLLNERHGYDVQILLLSI-------DEGITGYRDDSLKTVHR 107

Query: 79  VCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 +   V  Y+E +    + V+    S          C  C    +   L      
Sbjct: 108 NSAEYGLPLRVISYKELYGWTMDEVVR--LSGLR-----NSCTFCGVFRR-QALDRGAAL 159

Query: 136 LGADVLATGHYI 147
           LGA  + TGH  
Sbjct: 160 LGATKIVTGHNA 171


>gi|315649809|ref|ZP_07902892.1| argininosuccinate synthase [Paenibacillus vortex V453]
 gi|315274783|gb|EFU38164.1| argininosuccinate synthase [Paenibacillus vortex V453]
          Length = 410

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYD-A 76
             ++V+A SGG+D+SV+   LK   YD  +I  T     +    K +      + +   A
Sbjct: 3   KQKIVLAYSGGLDTSVILKWLKET-YDAEIIAFT-----ADIGQKEELDGLEEKALATGA 56

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
            +V        Y+ D  + F N  I P           Y  G +    +   R V     
Sbjct: 57  SKV--------YIDDLRDEFANDFIYPMFQAGAMYEGQYLLGTSIARPLIAKRMV----- 103

Query: 130 LSVTRQLGADVLATG 144
             + R  GA  +A G
Sbjct: 104 -DIARAEGATAIAHG 117


>gi|302343484|ref|YP_003808013.1| exsB protein [Desulfarculus baarsii DSM 2075]
 gi|301640097|gb|ADK85419.1| exsB protein [Desulfarculus baarsii DSM 2075]
          Length = 234

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+   A+    G++   ++ +                  ++  A+RV   +
Sbjct: 11 VVLLSGGLDSATCLAMANDQGFEPHALSFRY-----------GQRHAVELLAAQRVAQAL 59

Query: 84 NV-SHYVFD 91
              H + D
Sbjct: 60 GARRHLILD 68


>gi|227487027|ref|ZP_03917343.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093101|gb|EEI28413.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 609

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 58/195 (29%), Gaps = 30/195 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D R +  +SGGVDS+V AA+++R  G  +  V     +       +        V     
Sbjct: 309 DGRAICGLSGGVDSAVAAAIVQRAIGDRLTCVF---VDHGLLRAGERQQVEEDFV----- 360

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                       D  E F +           AG T           +F            
Sbjct: 361 --KATGAKLVTVDESEAFLSK---------LAGVTEPEAKRKAIGAEFIRSFERAVAGVL 409

Query: 139 DVLATGHYIRSRLY---VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           D    G  ++  LY   V   G       +           +         +L  PL  +
Sbjct: 410 DGQDVGFLVQGTLYPDVVESGGGSGTANIKSHHN-------VGGLPDDVEFELVEPLRLL 462

Query: 196 KKESVRDLAREMGLD 210
            K+ VR + RE+GL 
Sbjct: 463 FKDEVRAVGRELGLP 477


>gi|171318213|ref|ZP_02907377.1| NAD+ synthetase [Burkholderia ambifaria MEX-5]
 gi|171096607|gb|EDT41500.1| NAD+ synthetase [Burkholderia ambifaria MEX-5]
          Length = 282

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 69/207 (33%)

Query: 24  VVAMSGGVDSSVV---AALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           V+ +SGGVDSS     A L        GY+   + ++L N               D  DA
Sbjct: 49  VLGISGGVDSSTAGRLAQLAVEQLRAGGYEARFIAMRLPN-----------GVQNDEADA 97

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R                           +   A ET    V                 +
Sbjct: 98  QRA-------------------------LAFVRADETFTVDVKP-----------AADAM 121

Query: 137 GADVLATGHY----IRSRLYVGDDGKRRRIMC--------RPMDLERDQ---SYFLFATT 181
            A ++A+GH      +     G+   R R++         R + +  D    S   F T 
Sbjct: 122 LASLVASGHAFETPAQQDFVHGNIKARERMIAQYAVAGARRGIVIGTDHAAESLMGFFTK 181

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG 208
                    PL  + K  VR +AR +G
Sbjct: 182 FGDGGADVLPLAGLSKRRVRAVARALG 208


>gi|225426434|ref|XP_002274590.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 534

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 41/206 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+ +  G  +  V +     R   + +      +D      
Sbjct: 227 DDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMETFERD------ 280

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D   +F +    V+ P               +  R +   + +S    
Sbjct: 281 ----LHLPVTCVDATNQFLSKLKGVVDP---------------EMKRKIIGKEFISSFDA 321

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIM---CRPMDLERDQSYF------LFATTQQQLC 186
            G D+    H    +      G     +   C P    R  S+       +    +    
Sbjct: 322 FGQDL---EHKFGKKPVYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKL 378

Query: 187 DLRFPLGDMKKESVRDLAREMGLDIA 212
            L  PL  + K+ VR+L R + +  A
Sbjct: 379 KLIEPLKLLFKDEVRELGRILNVPRA 404


>gi|123969449|ref|YP_001010307.1| argininosuccinate synthase [Prochlorococcus marinus str. AS9601]
 gi|166221006|sp|A2BTT9|ASSY_PROMS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|123199559|gb|ABM71200.1| Argininosuccinate synthase [Prochlorococcus marinus str. AS9601]
          Length = 404

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGGVD+SV    LK +           Y   +          G+D+   R+  
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKNE-----------YGISEVVTFVADLGQGEDLELVRQKA 53

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                S  +  +    F      P   + A      P      R +   +L+++ R++ A
Sbjct: 54  LNSGASKSIVGNLVNSFVERYAFPAIRANALYLDKYPLSTALARPLIAENLVNIAREINA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|119509152|ref|ZP_01628303.1| NAD(+) synthetase [Nodularia spumigena CCY9414]
 gi|119466318|gb|EAW47204.1| NAD(+) synthetase [Nodularia spumigena CCY9414]
          Length = 573

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 22/146 (15%)

Query: 5   EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALL-----KRDGYDVIGVTLQLYNSRK 59
           +A  L   D  +  +  +VV+ +SGG+DS++VAA+      K    +V GV +       
Sbjct: 282 QALVLGVRDYAQKCRFSKVVLGLSGGIDSALVAAIASVALGKE---NVFGVLM------- 331

Query: 60  ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
                    +   V DA  + + + +   +    E    A      +   AG       +
Sbjct: 332 ----PSPYSSSHSVSDALALGENLGIETTILKIGEL--MAGFDHTLADLFAGTEFGIAEE 385

Query: 120 CNR-TVKFSDLLSVTRQLGADVLATG 144
             +  ++ + L+++  + G  +L+TG
Sbjct: 386 NIQSRIRGNLLMAIANKFGYLLLSTG 411


>gi|71279129|ref|YP_269674.1| PP-loop family protein [Colwellia psychrerythraea 34H]
 gi|123632054|sp|Q47ZU5|TTCA_COLP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71144869|gb|AAZ25342.1| PP-loop family protein [Colwellia psychrerythraea 34H]
          Length = 314

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 29/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAA----LLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +V+V +SGG DS         LLK      +D+I V L      +           + + 
Sbjct: 47  KVMVCLSGGKDS-YAMLSILMLLKESAPIHFDIIAVNL-----DQKQPGFPEHILPEYL- 99

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                 D + + +++    E     ++         G+T   C  C+R ++ + L    +
Sbjct: 100 ------DKLGIEYHIV---EEDTYGIVK---EKVPEGKT--TCSLCSR-LRRAVLYKAAK 144

Query: 135 QLGADVLATGHY 146
           ++GA  +A GH+
Sbjct: 145 KIGATKIALGHH 156


>gi|15668605|ref|NP_247403.1| argininosuccinate synthase [Methanocaldococcus jannaschii DSM 2661]
 gi|2492988|sp|Q60174|ASSY_METJA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|1591132|gb|AAB98414.1| argininosuccinate synthetase (argG) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 395

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 39/200 (19%)

Query: 22  RVVV-AMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+ V A SGG+D+S    LL+   GY V+ V + +    +  K                 
Sbjct: 3   RIAVLAYSGGLDTSCCLKLLEDKYGYKVVSVCVDVGQPEEEIKEVEEKAKK--------- 53

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLG 137
              + V  HY  D +E F    I     + A  E  PL        +     + +  ++G
Sbjct: 54  ---LGVLKHYTIDAKEEFVKDYIFRAIKANAMYEGYPLSTALARPLIAHKV-VEIAEEVG 109

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--M 195
           A+ +A G                    +  D  R ++             +  P+ D  +
Sbjct: 110 AEAVAHG-----------------CTGKGNDQFRFETTIRIKAPHL---KIIAPIRDLNL 149

Query: 196 KKESVRDLAREMGLDIADKS 215
            +    + A+E G+ I  +S
Sbjct: 150 TRAEEIEYAKEKGIPIPTES 169


>gi|299149110|ref|ZP_07042171.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           3_1_23]
 gi|298512777|gb|EFI36665.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           3_1_23]
          Length = 555

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 42/217 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERF----RNAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDALRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRDLAREM 207
              ++ L             P  +++K  VR+   EM
Sbjct: 404 FLDKEFLDVAMNLNPKAKMCPGKEIEKRIVREAFAEM 440


>gi|297250334|ref|ZP_06864109.2| NAD+ synthetase [Neisseria polysaccharea ATCC 43768]
 gi|296839171|gb|EFH23109.1| NAD+ synthetase [Neisseria polysaccharea ATCC 43768]
          Length = 273

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHHDQLERARRHIRNLQGQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGVHQTAFDSQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|254517171|ref|ZP_05129229.1| NAD+ synthetase [gamma proteobacterium NOR5-3]
 gi|219674676|gb|EED31044.1| NAD+ synthetase [gamma proteobacterium NOR5-3]
          Length = 540

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++  A+     G + V  V +                +   + DA +  
Sbjct: 284 VVLGLSGGVDSALTLAVAVDALGPERVQAVMM-----------PFRYTSDISIADAAQQS 332

Query: 81  DTINVSHYVFDYEERFR 97
            T+ V H V   E  + 
Sbjct: 333 ATLGVRHSVISIEPIYE 349


>gi|16265105|ref|NP_437897.1| NAD synthetase [Sinorhizobium meliloti 1021]
 gi|307309472|ref|ZP_07589128.1| NAD+ synthetase [Sinorhizobium meliloti BL225C]
 gi|25090778|sp|Q92TY6|NADE_RHIME RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|15141244|emb|CAC49757.1| NAD+ synthase [Sinorhizobium meliloti 1021]
 gi|306900057|gb|EFN30677.1| NAD+ synthetase [Sinorhizobium meliloti BL225C]
          Length = 334

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DSSV  AL  R  G  +V  + +   +S   S R G           R V +
Sbjct: 45  VLGLSGGIDSSVSVALAVRAVGAKNVFCLFMPENDSDPESLRLG-----------RLVAE 93

Query: 82  TINVSHYVFD 91
           T  V   V D
Sbjct: 94  TFGVEAVVED 103


>gi|149705970|ref|XP_001494406.1| PREDICTED: similar to Asparagine synthetase [Equus caballus]
          Length = 561

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 22  RVVVAMSGGVDSS-VVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           R+   +SGG+DSS V A LLK+     V    LQ +                D+  AR+V
Sbjct: 252 RIGCLLSGGLDSSLVAATLLKQLKAAQVQ-YPLQTFAIGMEDSP--------DLLAARKV 302

Query: 80  CDTINVSHYVFDYEER 95
            + I   H+   +   
Sbjct: 303 ANHIGSEHHEVLFNSE 318


>gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter hamburgensis X14]
 gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
           hamburgensis X14]
          Length = 345

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 57/258 (22%)

Query: 1   MVVSEATRLNSLD----LDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGV 50
           M+  +A+ +++ +             +V+ +SGG DS+ +  L  R       G D+I V
Sbjct: 1   MIEDDASPISATEAKLLFADWKAAHALVLGVSGGPDSTALMWLAARWRRAMTRGPDLIAV 60

Query: 51  TLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
           T                 + ++  D + +  ++ + H                    ++ 
Sbjct: 61  T---------VDHGLRPGSAREARDVKHLATSLGMRHRTV----------------RWSG 95

Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY----IRSRLYVGDDGKRRRIM-CR 165
            +         R  ++  L    R  GA  + T H       + L     G     +   
Sbjct: 96  AKPKSGLPAAARDARYRLLAKTARANGALHVFTAHTRDDQAETVLMRISRGSGITGLSAM 155

Query: 166 PMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
             +  RD            L     PL  + K  +     + G+  A+   ++D+ F + 
Sbjct: 156 ARETMRD---------GFILAR---PLLHVSKSRLIATLEKAGIAYAEDPTNRDVSFTRP 203

Query: 226 GKYFDVVKRINAGIALEG 243
                 ++ +   +A EG
Sbjct: 204 R-----LRALMPALAEEG 216


>gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium tumefaciens str. C58]
 gi|61216678|sp|Q8U9L7|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium tumefaciens str. C58]
          Length = 443

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 47/141 (33%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--------RKGSCCAG 70
           K   ++VA+SGG DS               G+ L L  ++ A                  
Sbjct: 28  KPTHILVAISGGSDS--------------TGLLLALQEAKAADDDGLRLSAVTVDHALRP 73

Query: 71  QDVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD---CNRTV 124
           +   +AR+V   C  + + H                        + P P       +R  
Sbjct: 74  ESADEARKVAMLCAELGIPHTT-------------------RRWDGPKPASGLSEASRLA 114

Query: 125 KFSDLLSVTRQLGADVLATGH 145
           ++  +  V R++GAD++ +GH
Sbjct: 115 RYRLIADVAREIGADLVVSGH 135


>gi|16081635|ref|NP_394000.1| hypothetical protein Ta0525 [Thermoplasma acidophilum DSM 1728]
 gi|10639693|emb|CAC11665.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 216

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ +  +SGG DS + A +  + G+D++   +         +         +V  A  V 
Sbjct: 1   MKAIALISGGKDSFLSAYIAMQQGFDIVRAMI------VRPQEYSYMFHFPNVDKAGYVA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAA 110
             + +       E+ F+  V    +    A
Sbjct: 55  GMLGIEPEFV-LEDGFQQRVKEYASDGVKA 83


>gi|321462932|gb|EFX73952.1| hypothetical protein DAPPUDRAFT_200348 [Daphnia pulex]
          Length = 341

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 23  VVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V +  SGG DS+V+A +LK   + Y+  G+ L L +  +      +      +   +R  
Sbjct: 53  VAIGASGGKDSTVLAYVLKHLNEKYN-YGLKLVLLSIDEG----ITGYRDDSLESVKRNQ 107

Query: 81  DTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +  N+   V  Y++ +     +               C  C    +   L      L  D
Sbjct: 108 EEYNIPLTVLSYKDLYGWT--MDDIVKQVGR---KNNCTFCGVFRR-QALDRGAVLLKCD 161

Query: 140 VLATGHYI 147
           ++ATGH  
Sbjct: 162 IIATGHNA 169


>gi|237719401|ref|ZP_04549882.1| asparagine synthetase B [Bacteroides sp. 2_2_4]
 gi|293370272|ref|ZP_06616832.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides ovatus SD
           CMC 3f]
 gi|229451261|gb|EEO57052.1| asparagine synthetase B [Bacteroides sp. 2_2_4]
 gi|292634769|gb|EFF53298.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides ovatus SD
           CMC 3f]
          Length = 555

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 42/217 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERF----RNAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDALRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRDLAREM 207
              ++ L             P  +++K  VR+   EM
Sbjct: 404 FLDKEFLDVAMNLNPKAKMCPGKEIEKRIVREAFAEM 440


>gi|126459655|ref|YP_001055933.1| thiamine biosynthesis protein ThiI [Pyrobaculum calidifontis JCM
           11548]
 gi|126249376|gb|ABO08467.1| thiamine biosynthesis/tRNA modification protein ThiI [Pyrobaculum
           calidifontis JCM 11548]
          Length = 473

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDV 47
            + +V+  +SGG+DS V A +L R G  V
Sbjct: 168 SEGKVLALVSGGIDSPVAAWMLMRRGAHV 196


>gi|222475966|ref|YP_002564487.1| exsB protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454337|gb|ACM58601.1| exsB protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 229

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DAR 77
           +   V+ +SGG+DS+         GY+     L     ++   ++  C        DA 
Sbjct: 2  SNKSAVILVSGGMDSATAVYEAIEQGYEP--YFLHTSYGQRTEDKEYECAKALAEEVDA- 58

Query: 78 RVCDTINVS 86
             D +++ 
Sbjct: 59 --ADFLHIE 65


>gi|92117038|ref|YP_576767.1| NAD synthetase [Nitrobacter hamburgensis X14]
 gi|91799932|gb|ABE62307.1| NH(3)-dependent NAD(+) synthetase [Nitrobacter hamburgensis X14]
          Length = 583

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G + V GV L                A   + DA  + 
Sbjct: 294 VLLGVSGGIDSALCAAIAVDALGAERVRGVML-----------PFRFTAQVSLDDAATLA 342

Query: 81  DTINVSHYVF 90
             + + + V 
Sbjct: 343 KALGIRYEVL 352


>gi|326423827|ref|NP_760295.2| argininosuccinate synthase [Vibrio vulnificus CMCP6]
 gi|44887690|sp|Q7MH72|ASSY_VIBVY RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|44889070|sp|Q8DCN0|ASSY_VIBVU RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|319999197|gb|AAO09822.2| argininosuccinate synthase [Vibrio vulnificus CMCP6]
          Length = 403

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVVA SGG+D+SV+   LK             Y+    +         +++        
Sbjct: 8   KVVVAYSGGLDTSVIIPWLKE-----------NYDCEVVAFVADVGQGEEELVGIEEKAK 56

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  YV D +E      I P           Y  G +    V     V       + 
Sbjct: 57  ASGASECYVVDLKEELVADYIYPTLKTGAYYEGKYLLGTSMARPVIAKAQV------EIA 110

Query: 134 RQLGADVLATG 144
           R++GAD L  G
Sbjct: 111 RKVGADALCHG 121


>gi|34556501|ref|NP_906316.1| galactosyl transferase, GDP-mannose
           pyrophosphorylase,phosphomannomutase, UDP-galactose
           4-epimerase, galactosyl transferase,nucleotide sugar
           dehydrogenase, nucleotide sugar epimerase, andputative
           epimerase/dehydratase genes; and unknown genes
           [Wolinella succinogenes DSM 1740]
 gi|34482215|emb|CAE09216.1| GALACTOSYL TRANSFERASE, GDP-MANNOSE
           PYROPHOSPHORYLASE,PHOSPHOMANNOMUTASE, UDP-GALACTOSE
           4-EPIMERASE, GALACTOSYL TRANSFERASE,NUCLEOTIDE SUGAR
           DEHYDROGENASE, NUCLEOTIDE SUGAR EPIMERASE, ANDPUTATIVE
           EPIMERASE/DEHYDRATASE GENES; AND UNKNOWN GENES
           [Wolinella succinogenes]
          Length = 618

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ V V +SGG+DSS+VAA+L++      G  +  +     + R            A+ V
Sbjct: 250 DVPVGVFLSGGIDSSLVAAILQKH----HG-HIHTFTIGFENPRYNEALY------AKGV 298

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSY 108
            + +   H            ++  F   Y
Sbjct: 299 AEHLGTEHTERILSAEEAREILYRFPEVY 327


>gi|320582784|gb|EFW97001.1| GMP synthetase, putative glutamine amidotransferase, putative
           [Pichia angusta DL-1]
          Length = 526

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 31/194 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A ++K      IG             RK      +   D     + 
Sbjct: 227 VIGAVSGGVDSTVGAKIMKEA----IGDRFHAIYVDNGLMRKNETVQVKKTLD-----EG 277

Query: 83  INVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPC---VDCNRTVKFSDLLSVTRQL 136
           + ++  V D   +F +    V  P       G T +     V      K    +    Q 
Sbjct: 278 LGINLTVVDASNQFLDKLKGVTDPEKKRKIIGNTFIHVFEKVASEIKPKDGSQIEYLLQ- 336

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
                     I S  + G     +                +    +     L  PL ++ 
Sbjct: 337 ---GTLYPDVIESISFKGPSQTIKTHHN------------VGGLLEDMKLKLIEPLRELF 381

Query: 197 KESVRDLAREMGLD 210
           K+ VRDL + MG+ 
Sbjct: 382 KDEVRDLGKLMGIP 395


>gi|297618556|ref|YP_003706661.1| PP-loop domain protein [Methanococcus voltae A3]
 gi|297618616|ref|YP_003706721.1| PP-loop domain protein [Methanococcus voltae A3]
 gi|297377533|gb|ADI35688.1| PP-loop domain protein [Methanococcus voltae A3]
 gi|297377593|gb|ADI35748.1| PP-loop domain protein [Methanococcus voltae A3]
          Length = 393

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           NP++ +++V +SGG DS  +  LL    ++ G  +  +T  L  +    +  G+     +
Sbjct: 103 NPRN-KIIVGLSGGKDSIALMHLLEPYRRKFGISITAITADL--NINGKRPWGNIEENPN 159

Query: 73  VYDARRVCDTINVSHYVF 90
           +    + C+ +N+ H + 
Sbjct: 160 LKKVHKQCENLNIPHKII 177


>gi|319404346|emb|CBI77943.1| NH3-dependent NAD synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 558

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++  SGG+DS++ AA+     G + V  V +                + + + DA+   
Sbjct: 293 VLLGFSGGIDSALCAAIAVDALGAERVHAVMM-----------PYYYTSQESLKDAKDCA 341

Query: 81  DTINVSHYVF 90
             +   + + 
Sbjct: 342 HLLGCRYEII 351


>gi|297705651|ref|XP_002829685.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Pongo
           abelii]
          Length = 348

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++LQL     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRALAPR-LGISLQL----VAVDEGIGGYRDAALAAVRRQAAR 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  YE+ F    +   A S A +G +   C  C   ++   L    R++GA  +
Sbjct: 109 WELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCG-VLRRRALEEGARRVGATHI 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|167758161|ref|ZP_02430288.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704]
 gi|167664058|gb|EDS08188.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704]
          Length = 263

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 28/134 (20%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +   + V +SGG DS         L+R     +++  VT               C    D
Sbjct: 41  EGDHIAVGISGGKDSLTLLYALHGLRRFYPKKFELSAVT--------VDLGYSEC----D 88

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                 +C+ + V + +       +  +               PC  C +  K   L   
Sbjct: 89  FTPVVYLCEELGVPYKIV------KTDIAHILFDERKES---NPCSLCAKMRK-GALNQA 138

Query: 133 TRQLGADVLATGHY 146
            +++G + +A  H+
Sbjct: 139 VKEMGCNKVAYAHH 152


>gi|161529081|ref|YP_001582907.1| GMP synthase [Nitrosopumilus maritimus SCM1]
 gi|160340382|gb|ABX13469.1| GMP synthase, large subunit [Nitrosopumilus maritimus SCM1]
          Length = 507

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 32/190 (16%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V+  +SGG+DS+V A L+ +  G  +  V +     R   + +       +      
Sbjct: 210 EGNVLCGVSGGIDSTVAALLIHKAIGDRLKCVFVNNGLLRLNEETEIETMFKDNFN---- 265

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL--PCVDCNRTVKFSDLLSVTRQL 136
                       ++        +  F       E P     +     V          + 
Sbjct: 266 -----------VNFTSI---NAVDSFLDKLKGVEDPEKKRKIVGEEFVNV--FTEFAEKN 309

Query: 137 G-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
           G    LA G      +  G           P D+ +   + +         ++  PL ++
Sbjct: 310 GPFKWLAQGTLYPDVIESGVSKG-------PADVIKSH-HNVGGLPDWLNLEILEPLREL 361

Query: 196 KKESVRDLAR 205
            K+ VR +A+
Sbjct: 362 YKDEVRMIAK 371


>gi|332158503|ref|YP_004423782.1| hypothetical protein PNA2_0862 [Pyrococcus sp. NA2]
 gi|331033966|gb|AEC51778.1| hypothetical protein PNA2_0862 [Pyrococcus sp. NA2]
          Length = 243

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          +  KN  D  V VA SGG DSS    +L+  G+ VI +T ++
Sbjct: 49 EFSKNEIDFEVAVAYSGGSDSSATIKILRWAGFRVIPITARI 90


>gi|298571422|gb|ADI87762.1| NAD+ synthetase [uncultured Nitrospirae bacterium MY4-5C]
          Length = 577

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           +  A  L + D         VV+ +SGG+DSS+VA +     G + V G+ +
Sbjct: 302 IYNALVLGTRDYVTKNGFKSVVIGLSGGIDSSIVACIAVDAIGPENVRGIFM 353


>gi|297566755|ref|YP_003685727.1| argininosuccinate synthase [Meiothermus silvanus DSM 9946]
 gi|296851204|gb|ADH64219.1| argininosuccinate synthase [Meiothermus silvanus DSM 9946]
          Length = 397

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 57/211 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++V+A SGG+D+S++   L  +   +VI  T                  G++V +AR  
Sbjct: 1   MKIVLAYSGGLDTSIILKWLIENYNAEVICFT-------------ADIGQGEEVEEARLK 47

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
                    Y  D  E F    + P   S       Y  G +        R +    L+ 
Sbjct: 48  ALRTGASKAYALDLREEFVADFVFPMFRSGALYEGYYLLGTSIA------RPLIAKHLVR 101

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DL 188
           + ++ GA+ +A G                           DQ  F    T   L     +
Sbjct: 102 IAQEEGAEAIAHG---------------------ATGKGNDQVRF--ELTAYALEPSIKV 138

Query: 189 RFPLGDMK---KESVRDLAREMGLDIADKSD 216
             P  +     +  +   A + G+ I    +
Sbjct: 139 IAPWREWSFVGRSEMIAYAAQHGIPIPVTIE 169


>gi|295657447|ref|XP_002789292.1| GMP synthase [Paracoccidioides brasiliensis Pb01]
 gi|226283962|gb|EEH39528.1| GMP synthase [Paracoccidioides brasiliensis Pb01]
          Length = 543

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  +V+ A+SGGVDS+V A L+K      IG                       + +A  
Sbjct: 234 EKGQVIGAVSGGVDSTVAAKLMKEA----IG---------DRFHAVLVDNGVLRLNEAAI 280

Query: 79  V----CDTINVSHYVFDYEERF 96
           V       + V+  V D  ERF
Sbjct: 281 VKETLTRHLGVNLTVVDASERF 302


>gi|160891848|ref|ZP_02072851.1| hypothetical protein BACUNI_04305 [Bacteroides uniformis ATCC 8492]
 gi|156858326|gb|EDO51757.1| hypothetical protein BACUNI_04305 [Bacteroides uniformis ATCC 8492]
          Length = 455

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 26/147 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS +   +    GY  I                 S     D   A+ V   +
Sbjct: 135 LVDLSGGLDSRMTTWVAHDMGYRNI------------VNICYSQSTSLDCQYAKDVAHFL 182

Query: 84  NVSHYV-----FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL----LSVTR 134
               YV       +           F   Y AG T       N+ +KF +     L  T 
Sbjct: 183 GNQFYVKYLDEASFVREVEEVTKKNFGMGYYAGIT-----GGNQFLKFLNFRVLGLEHTG 237

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRR 161
           QLG  ++  G+    R    D    + 
Sbjct: 238 QLGDLIVGGGYLKSLREDTIDVNGIKY 264


>gi|325105891|ref|YP_004275545.1| argininosuccinate synthase [Pedobacter saltans DSM 12145]
 gi|324974739|gb|ADY53723.1| argininosuccinate synthase [Pedobacter saltans DSM 12145]
          Length = 398

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S     L K    +V  V   + N+   S ++        + +   
Sbjct: 2   KKKVVLAFSGGLDTSFCCIYLSKDLDLEVHSV---IVNTGGFSDQE--------LKEIEE 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
              ++ V SH+  D  + + +  +              P  V   R  + + + +  +++
Sbjct: 51  RAYSLGVASHHAVDAVKGYYDDYLKYLIFGNVLKNNTYPLSVSAERVTQATAIANYAKEI 110

Query: 137 GADVLATG 144
            AD +A G
Sbjct: 111 NADFVAHG 118


>gi|307352769|ref|YP_003893820.1| exsB protein [Methanoplanus petrolearius DSM 11571]
 gi|307156002|gb|ADN35382.1| exsB protein [Methanoplanus petrolearius DSM 11571]
          Length = 221

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V  +SGG+DS+ +A + K  GY+++ +            R G     ++   AR+V 
Sbjct: 2  KKAVCLLSGGMDSTTLAYVAKDIGYEILALH----------TRYGQRTEKKEAECARKVA 51

Query: 81 DTIN 84
            + 
Sbjct: 52 SLLG 55


>gi|293364053|ref|ZP_06610789.1| thiamine biosynthesis/tRNA modification protein ThiI [Mycoplasma
           alligatoris A21JP2]
 gi|292552543|gb|EFF41317.1| thiamine biosynthesis/tRNA modification protein ThiI [Mycoplasma
           alligatoris A21JP2]
          Length = 380

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDV 47
           +V+  MSGG+DS V A +L + G  V
Sbjct: 166 KVLHLMSGGIDSPVAAFMLMKRGLKV 191


>gi|255530325|ref|YP_003090697.1| NAD+ synthetase [Pedobacter heparinus DSM 2366]
 gi|255343309|gb|ACU02635.1| NAD+ synthetase [Pedobacter heparinus DSM 2366]
          Length = 546

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 13/75 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + V+ +SGG+DS++V AL  R  G + V+ V +                +   + DA  +
Sbjct: 291 KAVLGLSGGIDSAIVCALACRALGPENVMAVLM-----------PSKYSSDHSIQDALDL 339

Query: 80  CDTINVSHYVFDYEE 94
              I   H V   +E
Sbjct: 340 VKNIGCEHEVIPIKE 354


>gi|226354886|ref|YP_002784626.1| argininosuccinate synthase [Deinococcus deserti VCD115]
 gi|259585353|sp|C1CXR6|ASSY_DEIDV RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|226316876|gb|ACO44872.1| putative Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Deinococcus deserti VCD115]
          Length = 408

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             ++V+A SGG+D+S++   L+    YDV+  T  L    +  + +              
Sbjct: 3   KDKIVLAYSGGLDTSIILKWLQTERNYDVVCFTADLGQGDEVEEARVKALNTG------A 56

Query: 79  VCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           V        Y  D  E F R+ V   F SS       L      R +    ++ + ++ G
Sbjct: 57  VAA------YALDLREEFVRDYVFPMFRSSALYEGYYLLGTSIARPLIAKKMVEIAQKEG 110

Query: 138 ADVLATG 144
           A  ++ G
Sbjct: 111 AVAVSHG 117


>gi|255690098|ref|ZP_05413773.1| PP-loop family protein [Bacteroides finegoldii DSM 17565]
 gi|260624377|gb|EEX47248.1| PP-loop family protein [Bacteroides finegoldii DSM 17565]
          Length = 248

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 37/138 (26%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRD-----GYDVIGVT--LQLYNSRKASKRKGSCCAG 70
           +  R+++ +SGG DS  +  LL KR       + VI V   +     +  ++   + C  
Sbjct: 30  EGDRILIGLSGGKDSLALVELLGKRARIYKPRFSVIAVHVVMTNIPYQSDTEYLKAHCEA 89

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD--CNRTVKFSD 128
             V   +                         P   +  +     PC     NR      
Sbjct: 90  NGVAFVQ-------------------YETSFDPSTDTRKS-----PCFLCSWNRR---KA 122

Query: 129 LLSVTRQLGADVLATGHY 146
           L +V ++ G + +A GH+
Sbjct: 123 LFTVAKEHGCNKIALGHH 140


>gi|167044829|gb|ABZ09497.1| putative glutamine amidotransferase class-I [uncultured marine
           crenarchaeote HF4000_APKG8D6]
          Length = 507

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 34/191 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  V+  +SGG+DS+V A L+ +  G  +  V +     R     +      ++      
Sbjct: 210 EGNVLCGVSGGIDSTVTALLIHKAIGNRLACVFVDNGLLRLNEAEEVENMFRKNFE---- 265

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
                 ++    D +ERF +    V  P       GE  +     N   KFS      ++
Sbjct: 266 ------INFTKIDEQERFLSRLNGVTDPEEKRKIVGEEFV-----NIFTKFS------KE 308

Query: 136 LG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
            G    LA G      +  G       ++    +        +          +  PL D
Sbjct: 309 NGPFTWLAQGTLYPDVIESGVSKGPASVIKTHHN--------VGGLPDWLDLKVLEPLRD 360

Query: 195 MKKESVRDLAR 205
           + K+ VR +A+
Sbjct: 361 LYKDEVRKVAK 371


>gi|222537719|ref|NP_660275.2| cytoplasmic tRNA 2-thiolation protein 1 [Homo sapiens]
 gi|74713747|sp|Q7Z7A3|CTU1_HUMAN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cancer-associated gene protein; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|31075485|gb|AAP42277.1| cancer-associated gene protein [Homo sapiens]
 gi|119592390|gb|EAW71984.1| ATP binding domain 3 [Homo sapiens]
 gi|158255782|dbj|BAF83862.1| unnamed protein product [Homo sapiens]
          Length = 348

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++LQL     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRALAPR-LGISLQL----VAVDEGIGGYRDAALAAVRRQAAR 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  YE+ F    +   A S A +G +   C  C   ++   L    R++GA  +
Sbjct: 109 WELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCG-VLRRRALEEGARRVGATHI 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|284998063|ref|YP_003419830.1| ExsB family protein [Sulfolobus islandicus L.D.8.5]
 gi|284445958|gb|ADB87460.1| ExsB family protein [Sulfolobus islandicus L.D.8.5]
          Length = 244

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 42/186 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ ++GG+DS+V+A  LK   Y + G  +            G     +++   + +   +
Sbjct: 6   IIQLTGGIDSTVLAYYLKDK-YVLHGTFI----------YYGYPPQLRELELVKELSRKL 54

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           ++   + D+              SY       P       +K+  ++ +     A   A 
Sbjct: 55  DIPLKIIDFS-------------SYIKSFDLPPIDSIQYIIKYQFVIEIL----ASFSAY 97

Query: 144 GHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
            +       ++ D+   +  + + ++     S   F         +  P   M K  V  
Sbjct: 98  PNLNTMLVGWLKDEWSNKMSILKGIE-----SLMGF--------KVIAPFHAMVKSEVIK 144

Query: 203 LAREMG 208
           L  E+G
Sbjct: 145 LGNELG 150


>gi|166366233|ref|YP_001658506.1| NAD synthetase [Microcystis aeruginosa NIES-843]
 gi|166088606|dbj|BAG03314.1| glutamine-dependent NAD(+) synthetase [Microcystis aeruginosa
           NIES-843]
          Length = 552

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 13/68 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RV+  +SGG+DSS+VAA+     G + V+ V +                +   + DA  
Sbjct: 297 KRVIFGLSGGIDSSLVAAIASDALGKENVLAVMM-----------PSPYSSDHSISDAVA 345

Query: 79  VCDTINVS 86
           + + + + 
Sbjct: 346 LVNNLGIK 353


>gi|159029185|emb|CAO87545.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 552

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 13/68 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            RV+  +SGG+DSS+VAA+     G + V+ V +                +   + DA  
Sbjct: 297 KRVIFGLSGGIDSSLVAAIASDALGKENVLAVMM-----------PSPYSSDHSISDAVA 345

Query: 79  VCDTINVS 86
           + + + + 
Sbjct: 346 LVNNLGIK 353


>gi|121702849|ref|XP_001269689.1| PP-loop ATPase superfamily protein, putative [Aspergillus clavatus
           NRRL 1]
 gi|119397832|gb|EAW08263.1| PP-loop ATPase superfamily protein, putative [Aspergillus clavatus
           NRRL 1]
          Length = 417

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           RV +  SGG DS+V+A++LK   + Y+  G+ L L +  +  +          +   +R 
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNERYN-YGLELCLLSIDEGIRGY----RDDSLETVKRN 107

Query: 80  CDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               ++   +  Y E +    + V+         G+    C  C    +   L     +L
Sbjct: 108 AVQYDMPLEIVGYSELYGWTMDQVVE------QVGKKGN-CTYCGVFRR-QALDRGAARL 159

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 160 GIKHVVTGHNA 170


>gi|163939247|ref|YP_001644131.1| exsB protein [Bacillus weihenstephanensis KBAB4]
 gi|254764308|sp|A9VKR8|QUEC_BACWK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|163861444|gb|ABY42503.1| exsB protein [Bacillus weihenstephanensis KBAB4]
          Length = 220

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+       +   +V  VT   YN R   K +  C        A  
Sbjct: 2  KKEKAVVVFSGGQDSTTCLFWAIQQFEEVEAVTF-NYNQR--HKLEIDC--------AVE 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + + H + D  
Sbjct: 51 IAKELGIKHTILDMS 65


>gi|312374023|gb|EFR21676.1| hypothetical protein AND_16612 [Anopheles darlingi]
          Length = 828

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 19 KDMRVVVAMSGGVDSS-----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          K MRVV  +SGG DS+     V A     +G++V+   L   + +   +           
Sbjct: 11 KKMRVVALVSGGKDSTYNMMQVTA-----EGHEVVA--LANLHPKDRDELDSYMYQTVGH 63

Query: 74 YDARRVCDTINVSHY 88
              ++ + + +  Y
Sbjct: 64 QGIEKLAEAMELPLY 78


>gi|299139448|ref|ZP_07032623.1| GMP synthase, large subunit [Acidobacterium sp. MP5ACTX8]
 gi|298598717|gb|EFI54880.1| GMP synthase, large subunit [Acidobacterium sp. MP5ACTX8]
          Length = 523

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 25/199 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VCD 81
           +  +SGGVDSSV A L+ R  G  +  + +                   +    ++ + +
Sbjct: 222 ICGLSGGVDSSVAAVLVARAIGDRLTCIFVNN-----------GVLRKDEFAKVQKTMRE 270

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
            + ++    D  ERF   +                 +  N  +  S      +++     
Sbjct: 271 ELKLNVVAVDASERFLGKLAGVTDPEKKRK------IIGNEFI--SVFDDEAKKIFEAEK 322

Query: 142 ATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
           ++G  I    +  +  D      +  P  + +   + +    +     L  PL D+ K+ 
Sbjct: 323 SSGEEIAWLVQGTLYPDVIESASVHGPSHVIKSH-HNVGGLPEDMKLKLIEPLRDLFKDE 381

Query: 200 VRDLAREMGLDIADKSDSQ 218
           VR + R++ +   +  + Q
Sbjct: 382 VRRIGRDLDMP-EEILERQ 399


>gi|291551165|emb|CBL27427.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus torques
           L2-14]
          Length = 482

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 28/154 (18%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  R+V+ +SGG DS    +    L+   G+ V+            +       A QD  
Sbjct: 21  KGDRIVIGVSGGADSVCLLMALCSLQEKLGFQVLVCH--------VNHELRGEEAAQDEA 72

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               +C  + V  +       F   V         A +      +  R V+      + R
Sbjct: 73  YVEMLCHKMQVPFFA------FHENV------ELIAKKRKESLEEAGRYVRRQAFEQLCR 120

Query: 135 QLGADVLATGHY----IRSRLYVGDDGKRRRIMC 164
           + G   +AT H+      + L     G   R +C
Sbjct: 121 EQGGTKIATAHHSNDNAETMLLNMARGTGLRGLC 154


>gi|224541818|ref|ZP_03682357.1| hypothetical protein CATMIT_00990 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525241|gb|EEF94346.1| hypothetical protein CATMIT_00990 [Catenibacterium mitsuokai DSM
           15897]
          Length = 634

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 9/40 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--------DVIGVTL 52
            +VVV MSGG+DS++   ++ +  Y        D+I VT+
Sbjct: 345 KKVVVGMSGGLDSTLALLVMHKA-YKMLGRPVSDIIAVTM 383


>gi|222152214|ref|YP_002561389.1| PP-loop family protein [Streptococcus uberis 0140J]
 gi|222113025|emb|CAR40337.1| PP-loop family protein [Streptococcus uberis 0140J]
          Length = 427

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 37/133 (27%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-----RDGYDV-IGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +V++A+SGGVDS     LL      ++ +++ IG+    +  R+ S+ + S        
Sbjct: 21  TKVLIAVSGGVDS---MNLLHFLHIYQEKFEILIGIVHVNHKQRQESEIEESYLIEW--- 74

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                    N+  Y   ++ +F            A   T           ++     + +
Sbjct: 75  -----AKKHNIPIYTSSFKGKFTE----------AKARTF----------RYDFFKKIMQ 109

Query: 135 QLGADVLATGHYI 147
           + G   L T H+ 
Sbjct: 110 EEGYTALVTAHHA 122


>gi|18310476|ref|NP_562410.1| PP-loop family protein [Clostridium perfringens str. 13]
 gi|18145156|dbj|BAB81200.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 277

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C  +++  +++D    F   V+   A  Y       PC  C   ++   L    ++LG +
Sbjct: 39  CKYLDIPVHIYD-SGIF--QVVDKIAKDY-------PCYMC-ARMRRGSLYGKAKELGCN 87

Query: 140 VLATGHYIR 148
            LA GH+  
Sbjct: 88  KLALGHHFN 96


>gi|312792343|ref|YP_004025266.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876293|ref|ZP_07736279.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796939|gb|EFR13282.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179483|gb|ADQ39653.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 235

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 48/215 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--------KRDGYDVIGVTLQLYNSRKASKRK 64
           D +      ++ V +S G DS  +   L        K+  +DV+ +T+ +          
Sbjct: 14  DFEMIEDGDKIAVGVSAGKDSLTMLYTLSFMRRFYPKK--FDVVAITVDMGFEGM----- 66

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D    +  CD I+V  ++     + +  V               PC  C   +
Sbjct: 67  -------DFLPIKEFCDKIDVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANL 109

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
           +   L S  + LG + +A GH++       DD      +    +           + +  
Sbjct: 110 RRGILNSTAKSLGCNKVALGHHL-------DDVVETFFLSLFFEGR-----IYCFSPKTY 157

Query: 185 LCD----LRFPLGDMKKESVRDLAREMGLDIADKS 215
           L         P+  +K+  +R  A+++ L +    
Sbjct: 158 LDRTQITTIRPMIYLKEHDLRSAAKKLELPVITNP 192


>gi|298244357|ref|ZP_06968163.1| asparagine synthase [Ktedonobacter racemifer DSM 44963]
 gi|297551838|gb|EFH85703.1| asparagine synthase [Ktedonobacter racemifer DSM 44963]
          Length = 596

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             ++ V +SGG+DS+ +AA L   G DV+   +           +    +  + Y A+ V
Sbjct: 238 GQKIGVLLSGGIDSAALAAALAELGTDVVAYHI-----------EFEHPSASEAYFAQAV 286

Query: 80  CDTINVSHYVF 90
           CD + +  +  
Sbjct: 287 CDALQIPLHTV 297


>gi|170696061|ref|ZP_02887198.1| PP-loop domain protein [Burkholderia graminis C4D1M]
 gi|170139053|gb|EDT07244.1| PP-loop domain protein [Burkholderia graminis C4D1M]
          Length = 324

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 27/140 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS-SV--VAALLKRD---GYDVIGVTLQLYNSRKASKRKGS 66
           D +      +V+V +SGG DS ++  V   L+      +D++ V L      +       
Sbjct: 48  DFNMIENGDKVMVCLSGGKDSYAMLDVLMRLRERAPINFDIVAVNL-----DQKQPGFPE 102

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               + +         +++  ++ + ++ +   ++         G+T   C  C+R ++ 
Sbjct: 103 HVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LRR 146

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L  V  +LGA  +A GH+
Sbjct: 147 GILYRVAGELGATKIALGHH 166


>gi|269794840|ref|YP_003314295.1| NAD+ synthetase [Sanguibacter keddieii DSM 10542]
 gi|269097025|gb|ACZ21461.1| NAD+ synthetase [Sanguibacter keddieii DSM 10542]
          Length = 553

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++VAA+      G +V GV++             +  +     DA  + 
Sbjct: 296 VVLGLSGGIDSALVAAICADAIGGDNVYGVSM-----------PSTYSSEHSKDDALDLA 344

Query: 81  DTINVSHYVF 90
             I  +HY  
Sbjct: 345 KRIG-AHYRV 353


>gi|268679656|ref|YP_003304087.1| argininosuccinate synthase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617687|gb|ACZ12052.1| argininosuccinate synthase [Sulfurospirillum deleyianum DSM 6946]
          Length = 409

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 30/141 (21%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           + KN K  +VV+A SGG+D+S++   L+ + Y    VT                  G+++
Sbjct: 1   MKKNVK--KVVLAYSGGLDTSIILKWLQDE-YQCEVVTF-----------TADIGQGEEL 46

Query: 74  YDARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRT 123
             AR+   ++ +     ++ D +E F    + P           Y  G +    +   R 
Sbjct: 47  EPARKKALSLGIKPENIFIEDLKEEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRQ 106

Query: 124 VKFSDLLSVTRQLGADVLATG 144
                   +   +GAD ++ G
Sbjct: 107 ------AEIAAMVGADGVSHG 121


>gi|254459104|ref|ZP_05072527.1| PP-loop family protein [Campylobacterales bacterium GD 1]
 gi|207084375|gb|EDZ61664.1| PP-loop family protein [Campylobacterales bacterium GD 1]
          Length = 253

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 29/151 (19%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY------DVIGVTLQLY 55
           ++S+  + N+ +     +  +++V +SGG DS  +   +K   +      + I VT    
Sbjct: 10  IMSKLGKTNA-EFGLIEEGDKILVGLSGGKDSLTMIHAMKEQQHRAPFKFEFIAVT---- 64

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                    G          A+  C   ++ + V D +            +     +   
Sbjct: 65  --------VGYGMGENFDNLAKH-CKEYDIPYIVHDTKI--------YDLAEEKIRKNSS 107

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            C   +R ++   L  +  + G + LA GH+
Sbjct: 108 FCSFFSR-MRRGTLYGIAEEQGCNKLALGHH 137


>gi|29336887|sp|Q93JQ8|ASSY_RHOFA RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|14595062|emb|CAC43336.1| arginino-succinate synthase [Rhodococcus fascians]
          Length = 395

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           M +V+A SGG+D+SV    LK   Y  +VI                  C     + D   
Sbjct: 1   MSIVLAYSGGLDTSVAVHWLKER-YQTEVIA----------------YCANLGQIEDLEA 43

Query: 79  V---CDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
           V         S  +  D  + F +   +P  ++ AA E         +R +    L+S+ 
Sbjct: 44  VSKRATAAGASEVIVEDVRDLFLHDYAIPALAAGAAYEGKYLLAAPLSRPLIAERLVSIA 103

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
           R+ GA  +A G         G+D  R     R +  E D
Sbjct: 104 RERGASAVAHG-----ATGKGNDQVRFYTSVRALAPELD 137


>gi|330941398|gb|EGH44224.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330980171|gb|EGH78353.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 274

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELVPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|302188993|ref|ZP_07265666.1| C32 tRNA thiolase [Pseudomonas syringae pv. syringae 642]
          Length = 274

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELVPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|262192149|ref|ZP_06050310.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93]
 gi|262031998|gb|EEY50575.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93]
          Length = 440

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 17/78 (21%)

Query: 22 RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          ++++A+SGGVDS V+ ALL       G+DV  V +    S  A +    C         +
Sbjct: 19 KLLLALSGGVDSQVLLALLARGRDEFGWDVTAVHVHHGLSPNADQWAQHC---------Q 69

Query: 78 RVCDTIN----VSHYVFD 91
          R C  +     + +   D
Sbjct: 70 RCCREVGMACQIEYVQLD 87


>gi|254374646|ref|ZP_04990127.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548]
 gi|151572365|gb|EDN38019.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548]
          Length = 398

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 51/228 (22%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNS 57
           M +S++  LN +   K      +++  SGGVDSSV   LL   K     +I + +  +N 
Sbjct: 1   MSISKSLVLNEI---KKFSPSHIIIGYSGGVDSSV---LLNISKELDIPLIAIYI-NHNL 53

Query: 58  RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117
            + S +    C        +++C   N+               I         GE+    
Sbjct: 54  HRDSLKWQIHC--------QQICQKYNL-------------QFISHSLDKVPKGESFE-- 90

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC--RPMDLERDQSY 175
                  + +    + +Q    +L  GH+        DD     ++   R   L      
Sbjct: 91  -AWASKQRMAFFQKIMQQYSKPLLLLGHH-------QDDQAETFLIQAIRGSGLA----- 137

Query: 176 FLFATT-QQQLCD--LRFPLGDMKKESVRDLAREMGLDIADKSDSQDI 220
            L      ++L    +  PL    K  + + A+   +       ++DI
Sbjct: 138 GLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185


>gi|94266223|ref|ZP_01289931.1| PP-loop [delta proteobacterium MLMS-1]
 gi|93453196|gb|EAT03657.1| PP-loop [delta proteobacterium MLMS-1]
          Length = 290

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 24/139 (17%)

Query: 22  RVVVAMSGGVDSSVVAALL----KRDG--YDVIGVTLQL-----YNSRKASKRKGSCCAG 70
           RV++A+SGG+DS V+  LL    ++    Y+++ V L +         +   +       
Sbjct: 58  RVMIAVSGGIDSLVLCRLLEIWRRKAPIDYELLAVHLDMGFAGYVPPPELGNQPPGTINA 117

Query: 71  QDVYDARRVCDTI---NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
                A  V   +    + +Y+             P   + AA      C  C    + +
Sbjct: 118 PLPGTAAAVEAQLQLIGLPYYI-------EETSCGP--EAMAAEGGKNGCYHCASRRR-A 167

Query: 128 DLLSVTRQLGADVLATGHY 146
            L  + R+ G + LA GH+
Sbjct: 168 RLFELARERGCNKLALGHH 186


>gi|84489426|ref|YP_447658.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|84372745|gb|ABC57015.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 340

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
           +  ++  VVVA+SGGVDSS    L K  G+++  VT
Sbjct: 139 QPIENTPVVVALSGGVDSSFTTVLTKALGFNLETVT 174


>gi|126090178|ref|YP_001041659.1| queuosine biosynthesis protein QueC [Shewanella baltica OS155]
 gi|126174471|ref|YP_001050620.1| queuosine biosynthesis protein QueC [Shewanella baltica OS155]
 gi|217973440|ref|YP_002358191.1| queuosine biosynthesis protein QueC [Shewanella baltica OS223]
 gi|254764383|sp|B8E544|QUEC_SHEB2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|125997676|gb|ABN61751.1| exsB protein [Shewanella baltica OS155]
 gi|125999834|gb|ABN63904.1| hypothetical protein Sbal_4541 [Shewanella baltica OS155]
 gi|217498575|gb|ACK46768.1| exsB protein [Shewanella baltica OS223]
          Length = 240

 Score = 42.5 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 66/208 (31%), Gaps = 36/208 (17%)

Query: 11  SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           S  L   P   + VV  SGG DS+           +V G+T                   
Sbjct: 2   STSLVSKPLASKAVVVFSGGQDSTTCLIQALTQYDEVHGITFDY-----------GQRHR 50

Query: 71  QDVYDARRVCDTINV-SHYVFD--------YEERFRNAV-IVPFASSYAAGETPLPCVDC 120
           +++  A+ +   + + SH V D             R+A+ +           T +P    
Sbjct: 51  EEIEVAKSLAKRLKITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVP---- 106

Query: 121 NRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179
            R + F  L      QLGA+ + TG           D       CR  D  +     L  
Sbjct: 107 GRNILFLTLAGIYAYQLGAEAIITG-------VCETDFSGYPD-CR-NDFVKAMESALVQ 157

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREM 207
              +QL  +  PL  + K     LA + 
Sbjct: 158 GMDKQL-KIITPLMWLNKAQTWALADKY 184


>gi|290473675|ref|YP_003466547.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii
          SS-2004]
 gi|289172980|emb|CBJ79751.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii
          SS-2004]
          Length = 449

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 2  VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYD 46
          +++    L ++ +D+  +  +V+V  SGG+DS+V+  LL +  Y 
Sbjct: 1  MINTHIPLLTMLIDQLGRHKKVLVGFSGGLDSTVLLHLLVQLRYQ 45


>gi|317480330|ref|ZP_07939431.1| hypothetical protein HMPREF1007_02548 [Bacteroides sp. 4_1_36]
 gi|316903505|gb|EFV25358.1| hypothetical protein HMPREF1007_02548 [Bacteroides sp. 4_1_36]
          Length = 460

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 26/147 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS +   +    GY  I                 S     D   A+ V   +
Sbjct: 232 LVDLSGGLDSRMTTWVAHDMGYRNI------------VNICYSQSTSLDCQYAKDVAHFL 279

Query: 84  NVSHYV-----FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL----LSVTR 134
               YV       +           F   Y AG T       N+ +KF +     L  T 
Sbjct: 280 GNQFYVKYLDEASFVREVEEVTKKNFGMGYYAGIT-----GGNQFLKFLNFRVLGLEHTG 334

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRR 161
           QLG  ++  G+    R    D    + 
Sbjct: 335 QLGDLIVGGGYLKSLREDTIDVNGIKY 361


>gi|300716862|ref|YP_003741665.1| putative ATPase [Erwinia billingiae Eb661]
 gi|299062698|emb|CAX59818.1| putative ATPase [Erwinia billingiae Eb661]
          Length = 297

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 32/133 (24%)

Query: 23  VVVA-MSGGVDSSVVAAL-----LKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           VV+A MSGG DS   A L     LK+     +DV+ V L           +      + +
Sbjct: 39  VVMACMSGGKDSF--AMLDILLNLKKVAPIHFDVVAVNL----------DQKQPGFPEHI 86

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             A    + +++ +Y+ D ++ +   V+         G+T   C  C+R ++   L S  
Sbjct: 87  LPAYF--EKLDIPYYIVD-KDTYS--VVREKIPE---GKT--TCGLCSR-LRRGTLYSFA 135

Query: 134 RQLGADVLATGHY 146
            ++GA  +A GH+
Sbjct: 136 ERIGATKIALGHH 148


>gi|268679168|ref|YP_003303599.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617199|gb|ACZ11564.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 250

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 29/195 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76
           +  R+++ +SGG DS  +A +LK          +Q         +    +   G+++   
Sbjct: 24  EGDRILLGLSGGKDSLSLAHILK---------HMQRVAPFDFEFKAVTITYGMGEELDTL 74

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
            + C    + H + D        +            +   C   +R ++   L +   + 
Sbjct: 75  HQHCVEHEIDHEIVD------TKIFDLAQDKIRENSSF--CSFFSR-MRRGALYTYALEY 125

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
           G   LA  H++   +             R M            T Q  L  +  PL   +
Sbjct: 126 GYTKLALAHHLDDAVESFFMNFSYNGTLRSMPPI--------YTAQNGL-HVIRPLIHAR 176

Query: 197 KESVRDLAREMGLDI 211
           +  +RD A+E  +  
Sbjct: 177 ERQLRDCAKEHNMPT 191


>gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
           16795]
 gi|164604367|gb|EDQ97832.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
           16795]
          Length = 462

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 42/199 (21%)

Query: 19  KDMRVVVAMSGGVDSSVVAA----LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K  ++V+ +SGG DS V        LK   +D+      +Y +    + +G   A +D  
Sbjct: 18  KGDKIVLGISGGPDS-VCLLHILNRLKEQ-FDIE-----IYAAHLNHQIRGI-EAQKDAL 69

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              R+C+ + + ++V          V           E  L   D  R +++     + +
Sbjct: 70  YVTRLCEEMGIKYFVRSI------DVPKYC------QENKLSIEDGARKLRYEMFFEIMQ 117

Query: 135 QLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
           +  A+ +A  H       + L     G     + R ++  RD               +  
Sbjct: 118 RTHANKIAIAHNVNDQAETILMRIMRGTGLHGL-RGIEYIRDNV-------------IIR 163

Query: 191 PLGDMKKESVRDLAREMGL 209
           P+ D+++  +     +  L
Sbjct: 164 PILDIERSEIESYCEQYNL 182


>gi|16124384|ref|NP_418948.1| argininosuccinate synthase [Caulobacter crescentus CB15]
 gi|221233067|ref|YP_002515503.1| argininosuccinate synthase [Caulobacter crescentus NA1000]
 gi|24211528|sp|Q9ABU1|ASSY_CAUCR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807515|sp|B8GXL9|ASSY_CAUCN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|13421238|gb|AAK22116.1| argininosuccinate synthase [Caulobacter crescentus CB15]
 gi|220962239|gb|ACL93595.1| argininosuccinate synthase [Caulobacter crescentus NA1000]
          Length = 408

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +VI  T                  G+++  AR  
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQTEYGAEVITFT-------------ADLGQGEEIEPARAK 53

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
                V     ++ D  E F    + P           Y  G +    +   + +     
Sbjct: 54  ALAAGVKPENIFIEDVREEFVRDYVFPMFRANTVYEGQYLLGTSIARPLIAKKQI----- 108

Query: 130 LSVTRQLGADVLATG 144
             + R++GAD ++ G
Sbjct: 109 -EIARKMGADAVSHG 122


>gi|329960742|ref|ZP_08299066.1| PP-loop family protein [Bacteroides fluxus YIT 12057]
 gi|328532457|gb|EGF59255.1| PP-loop family protein [Bacteroides fluxus YIT 12057]
          Length = 247

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 39/136 (28%)

Query: 22  RVVVAMSGGVDS-SVVAALLKRDG-YD------VIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++++ +SGG DS ++V  L KR   Y       V+ V ++                  DV
Sbjct: 33  KILIGLSGGKDSLALVELLAKRARIYKPEFSIVVVHVVMKNI------------PYQSDV 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET-PLPCVD--CNRTVKFSDLL 130
              R   ++  V      YE  F            AA +T   PC     NR      L 
Sbjct: 81  EYLREYVESWGVPF--LLYETEFD-----------AATDTRKSPCFLCSWNRR---KALF 124

Query: 131 SVTRQLGADVLATGHY 146
           +V ++ G + +A GH+
Sbjct: 125 TVAKEQGCNKIALGHH 140


>gi|160932368|ref|ZP_02079759.1| hypothetical protein CLOLEP_01204 [Clostridium leptum DSM 753]
 gi|156868970|gb|EDO62342.1| hypothetical protein CLOLEP_01204 [Clostridium leptum DSM 753]
          Length = 394

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
             +  V +SGG+DS V A ++ + G ++  V  
Sbjct: 179 GGKAAVLISGGIDSPVAAWMMAKRGVELTAVHF 211


>gi|307719550|ref|YP_003875082.1| hypothetical protein STHERM_c18740 [Spirochaeta thermophila DSM
           6192]
 gi|306533275|gb|ADN02809.1| hypothetical protein STHERM_c18740 [Spirochaeta thermophila DSM
           6192]
          Length = 292

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 63/199 (31%), Gaps = 52/199 (26%)

Query: 22  RVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           R+ V  SGGVDS   +VVA        +V+G              +        V  AR 
Sbjct: 39  RIAVGFSGGVDSTFLAVVAR-------EVLG----------KDAVRAYTLLPPHV--ARW 79

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                      FD   R      VPF         P  C  C + + F  +  +  + G 
Sbjct: 80  EAAEAAELAQRFDLTHRLIE---VPFVEEVRE-NPPDRCYRC-KRILFGAIKRMAEEDGY 134

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMK 196
            V+  G          D  + R  M    +L                  +R PL    + 
Sbjct: 135 PVVCDG------TNASDPEEDRPGMRALRELG-----------------VRSPLREAGLT 171

Query: 197 KESVRDLAREMGLDIADKS 215
           KE +RDL+R  GL   DK 
Sbjct: 172 KERIRDLSRAFGLPTWDKP 190


>gi|261409619|ref|YP_003245860.1| argininosuccinate synthase [Paenibacillus sp. Y412MC10]
 gi|261286082|gb|ACX68053.1| argininosuccinate synthase [Paenibacillus sp. Y412MC10]
          Length = 410

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYD-A 76
             ++V+A SGG+D+SV+   LK   YD  +I  T     +    K +      + +   A
Sbjct: 3   KQKIVLAYSGGLDTSVILKWLKET-YDAEIIAFT-----ADIGQKEELDGLEEKALATGA 56

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
            +V        Y+ D  + F N  I P           Y  G +    +   R V     
Sbjct: 57  SKV--------YIDDLRDEFANDFIFPMFQAGAMYEGQYLLGTSIARPLIAKRMV----- 103

Query: 130 LSVTRQLGADVLATG 144
             + R  GA  +A G
Sbjct: 104 -DIARAEGATAIAHG 117


>gi|167755465|ref|ZP_02427592.1| hypothetical protein CLORAM_00979 [Clostridium ramosum DSM 1402]
 gi|237733693|ref|ZP_04564174.1| argininosuccinate synthase [Mollicutes bacterium D7]
 gi|167704404|gb|EDS18983.1| hypothetical protein CLORAM_00979 [Clostridium ramosum DSM 1402]
 gi|229383291|gb|EEO33382.1| argininosuccinate synthase [Coprobacillus sp. D7]
          Length = 404

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK +  Y+VI   +   +  +A +  G       + +  +
Sbjct: 5   KVILAYSGGLD--TTAIIPWLKENYDYEVICCCI---DVGQAEELNG-------LEERAK 52

Query: 79  VCDTINVSHYVFDYEERFRNAVIVP-------FASSYAAGE-TPLPCVDCNRTVKFSDLL 130
            C       Y+ +  + +    I+P       F   Y  G  T  P +          L+
Sbjct: 53  ACGA--TKLYIKNVVDEYVKDYIMPTVQADAVFEYKYLLGTATARPLIA-------KILV 103

Query: 131 SVTRQLGADVLATG 144
            V RQ GA  +  G
Sbjct: 104 DVARQEGATAICHG 117


>gi|167562805|ref|ZP_02355721.1| Asparagine synthase family protein [Burkholderia oklahomensis
           EO147]
          Length = 418

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A  L++  G +  +  V L   +S          C  +D+  A RV
Sbjct: 223 VCAALSGGVDSSAGAIFLRKALGAEAPLAAVHLFSTSSPD--------CYERDM--AARV 272

Query: 80  CDTINVSHYVFDY--EERFRNAV 100
            D+I       D      F   +
Sbjct: 273 ADSIGAELICIDIDRHLPFSERI 295


>gi|167756870|ref|ZP_02428997.1| hypothetical protein CLORAM_02419 [Clostridium ramosum DSM 1402]
 gi|237734580|ref|ZP_04565061.1| thiamine biosynthesis protein thiI [Mollicutes bacterium D7]
 gi|167703045|gb|EDS17624.1| hypothetical protein CLORAM_02419 [Clostridium ramosum DSM 1402]
 gi|229382400|gb|EEO32491.1| thiamine biosynthesis protein thiI [Coprobacillus sp. D7]
          Length = 398

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + ++ MSGG+DS V   L  + G D+  +             + +     D+ D  R 
Sbjct: 176 GGKALLMMSGGIDSPVAGYLTLKRGVDIECIHFA----APPYTNELAREKVFDLVDKLRH 231

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
               ++  +V ++ +  + AV      SYA 
Sbjct: 232 YTHGSIRVHVINFTKL-QLAVYDNCDESYAM 261


>gi|189346767|ref|YP_001943296.1| argininosuccinate synthase [Chlorobium limicola DSM 245]
 gi|229889858|sp|B3ECP2|ASSY_CHLL2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|189340914|gb|ACD90317.1| Argininosuccinate synthase [Chlorobium limicola DSM 245]
          Length = 400

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 41/203 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ +A SGG+D+SV+   LK   YD  ++ VT             G+    +++ +    
Sbjct: 5   KIALAYSGGLDTSVMIKWLKDK-YDAEIVAVT-------------GNLGQQKEIENLESK 50

Query: 80  CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
             +   S     D  + F    I     + A  E   P      R +    L+ V  +  
Sbjct: 51  AYSTGASAFRFVDLRKTFVEEYIWRALKAGALYEDVYPLATALGRPLLAKALVDVALEEN 110

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDM 195
             +LA G                    +  D  R +  F           +  PL   + 
Sbjct: 111 CTMLAHG-----------------CTGKGNDQVRFEVTFASLAPHL---KILAPLREWEF 150

Query: 196 KKESV-RDLAREMGLDIADKSDS 217
                    A E  + ++    S
Sbjct: 151 TSREAEIAYALEHNIPVSATKKS 173


>gi|325274587|ref|ZP_08140643.1| exsB protein [Pseudomonas sp. TJI-51]
 gi|324100229|gb|EGB98019.1| exsB protein [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + R V+ +SGG+DS+ V A+ K DGY     T+        S   G     + +  A RV
Sbjct: 3  EKRAVILLSGGLDSATVVAMAKADGYSC--YTM--------SFDYGQRHRAE-LNAAARV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARDLGVVEHKVI 63


>gi|289555672|ref|ZP_06444882.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 605]
 gi|289440304|gb|EFD22797.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 605]
          Length = 524

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-- 77
           D   +  +SGGVDS+V AAL++R     IG         + +         +    A+  
Sbjct: 224 DGHAICGLSGGVDSAVAAALVQRA----IG--------DRLTCVFVDHGLLRAGERAQVQ 271

Query: 78  --RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              V  T   +    D  E F  A   V  P       G   +   +         +  V
Sbjct: 272 RDFVAAT-GANLVTVDAAETFLEALSGVSAPEGKRKIIGRQFIRAFE-------GAVRDV 323

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
                A+ L  G      +  G  G       +           +       L      P
Sbjct: 324 LDGKTAEFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDD-LKFTLVEP 373

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+GL 
Sbjct: 374 LRLLFKDEVRAVGRELGLP 392


>gi|329928698|ref|ZP_08282547.1| argininosuccinate synthase [Paenibacillus sp. HGF5]
 gi|328937479|gb|EGG33897.1| argininosuccinate synthase [Paenibacillus sp. HGF5]
          Length = 410

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYD-A 76
             ++V+A SGG+D+SV+   LK   YD  +I  T     +    K +      + +   A
Sbjct: 3   KQKIVLAYSGGLDTSVILKWLKET-YDAEIIAFT-----ADIGQKEELDGLEEKALATGA 56

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
            +V        Y+ D  + F N  I P           Y  G +    +   R V     
Sbjct: 57  SKV--------YIDDLRDEFANDFIFPMFQAGAMYEGQYLLGTSIARPLIAKRMV----- 103

Query: 130 LSVTRQLGADVLATG 144
             + R  GA  +A G
Sbjct: 104 -DIARAEGATAIAHG 117


>gi|319790338|ref|YP_004151971.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1]
 gi|317114840|gb|ADU97330.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1]
          Length = 443

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 63/210 (30%), Gaps = 56/210 (26%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAA--LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
            +  P   +++VA+SGG DS V     LL+  G       LQL +S  A          +
Sbjct: 13  FNLIPPGSKLLVALSGGPDS-VALLNVLLELRGE------LQL-SSLAAVHVNHQLRGAE 64

Query: 72  DVYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP----CVDCNRTV 124
              D R V   C  + V          F   V            T  P         R  
Sbjct: 65  SERDERFVKELCGQLGVPL--------FTERV------------TVNPKGKGVEAAARQE 104

Query: 125 KFSDLLSVTRQLGADVLATGH----YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           ++     V R    D +A GH       + L     G   R + R    +RD        
Sbjct: 105 RYRVFDRVLRLWKGDYVALGHTASDLAETVLLNLAKGTGIRGL-RGFLPKRD-------- 155

Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
                     PL ++ +  V +     GL 
Sbjct: 156 ------RYVRPLFEVTRREVEEYLELKGLP 179


>gi|262306033|gb|ACY45609.1| gln amidotransferase [Derocheilocaris typicus]
          Length = 196

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKR 42
          +  V++ MSGGVDS+  AALL++
Sbjct: 43 NRNVLMLMSGGVDSTACAALLQK 65


>gi|256375054|ref|YP_003098714.1| NAD+ synthetase [Actinosynnema mirum DSM 43827]
 gi|255919357|gb|ACU34868.1| NAD+ synthetase [Actinosynnema mirum DSM 43827]
          Length = 571

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+VVA+L     G D V GV++                +     DA  + 
Sbjct: 316 VVLGLSGGIDSAVVASLAVDALGADSVHGVSM-----------PSVYSSDHSRSDAEDLA 364

Query: 81  DTINVSH 87
               + +
Sbjct: 365 QRTGLHY 371


>gi|194753600|ref|XP_001959100.1| GF12710 [Drosophila ananassae]
 gi|226711416|sp|B3MI77|CTU1_DROAN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|190620398|gb|EDV35922.1| GF12710 [Drosophila ananassae]
          Length = 343

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V VA SGG DS+V+A +LK   + +D  G+ L L +  +      +      +   
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLKLLNERHD-YGLDLVLLSIDEG----ITGYRDDSLETV 103

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++  D   +   +  YEE +    + ++         G +   C  C    +   L    
Sbjct: 104 KQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDRGA 155

Query: 134 RQLGADVLATGHYI 147
           + LG D +ATGH  
Sbjct: 156 KLLGVDSIATGHNA 169


>gi|121535218|ref|ZP_01667033.1| NAD+ synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306209|gb|EAX47136.1| NAD+ synthetase [Thermosinus carboxydivorans Nor1]
          Length = 634

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 21  MRVVVAMSGGVDSSVVAAL 39
            RVV+ +SGG+DS+V AAL
Sbjct: 320 KRVVIGVSGGIDSAVTAAL 338


>gi|262306079|gb|ACY45632.1| gln amidotransferase [Milnesium tardigradum]
          Length = 203

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKR 42
          + K   D +V++  SGGVDS+V A LL++
Sbjct: 37 IKKTVGDQKVLLLASGGVDSTVCAKLLQK 65


>gi|240167851|ref|ZP_04746510.1| GMP synthase [Mycobacterium kansasii ATCC 12478]
          Length = 518

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 218 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 250


>gi|195379938|ref|XP_002048729.1| GJ21203 [Drosophila virilis]
 gi|226711422|sp|B4LM02|CTU1_DROVI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194143526|gb|EDW59922.1| GJ21203 [Drosophila virilis]
          Length = 343

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V VA SGG DS+V+A +LK   + +D  G+ L L +  +      +      +   
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLKLLNERHD-YGLDLVLLSIDEG----ITGYRDDSLETV 103

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           ++  D   +   +  YEE +    + ++         G +   C  C    +   L    
Sbjct: 104 KQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDRGA 155

Query: 134 RQLGADVLATGHYI 147
           + LG D +ATGH  
Sbjct: 156 KLLGVDSIATGHNA 169


>gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum
          V4]
 gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum
          V4]
          Length = 307

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 17/69 (24%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRV-- 79
          V+  +SGGVDS V+   L   G   I +  Q  +   + S             DA+ V  
Sbjct: 22 VLCGISGGVDSIVLLHSLVETGKRPIVLHFQHGWRQDEES-------------DAKLVEE 68

Query: 80 -CDTINVSH 87
              + V  
Sbjct: 69 TAKELGVEF 77


>gi|15610532|ref|NP_217913.1| GMP synthase [Mycobacterium tuberculosis H37Rv]
 gi|31794577|ref|NP_857070.1| GMP synthase [Mycobacterium bovis AF2122/97]
 gi|121639321|ref|YP_979545.1| GMP synthase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663260|ref|YP_001284783.1| GMP synthase [Mycobacterium tuberculosis H37Ra]
 gi|148824604|ref|YP_001289358.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis F11]
 gi|167968718|ref|ZP_02550995.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis H37Ra]
 gi|215405434|ref|ZP_03417615.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis 02_1987]
 gi|215413303|ref|ZP_03421988.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428899|ref|ZP_03426818.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis T92]
 gi|215432363|ref|ZP_03430282.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis EAS054]
 gi|215447725|ref|ZP_03434477.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis T85]
 gi|218755175|ref|ZP_03533971.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis GM 1503]
 gi|219559470|ref|ZP_03538546.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis T17]
 gi|224991818|ref|YP_002646507.1| GMP synthase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800443|ref|YP_003033444.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 1435]
 gi|254552502|ref|ZP_05142949.1| GMP synthase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260188453|ref|ZP_05765927.1| GMP synthase [Mycobacterium tuberculosis CPHL_A]
 gi|260202526|ref|ZP_05770017.1| GMP synthase [Mycobacterium tuberculosis T46]
 gi|260206763|ref|ZP_05774254.1| GMP synthase [Mycobacterium tuberculosis K85]
 gi|289444947|ref|ZP_06434691.1| GMP synthase guaA [Mycobacterium tuberculosis T46]
 gi|289449094|ref|ZP_06438838.1| GMP synthase guaA [Mycobacterium tuberculosis CPHL_A]
 gi|289571633|ref|ZP_06451860.1| GMP synthase guaA [Mycobacterium tuberculosis T17]
 gi|289576129|ref|ZP_06456356.1| GMP synthase guaA [Mycobacterium tuberculosis K85]
 gi|289747224|ref|ZP_06506602.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289752114|ref|ZP_06511492.1| GMP synthase guaA [Mycobacterium tuberculosis T92]
 gi|289755526|ref|ZP_06514904.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289759557|ref|ZP_06518935.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis T85]
 gi|289763579|ref|ZP_06522957.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis GM 1503]
 gi|294995830|ref|ZP_06801521.1| GMP synthase [Mycobacterium tuberculosis 210]
 gi|297636058|ref|ZP_06953838.1| GMP synthase [Mycobacterium tuberculosis KZN 4207]
 gi|297733058|ref|ZP_06962176.1| GMP synthase [Mycobacterium tuberculosis KZN R506]
 gi|298526879|ref|ZP_07014288.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777737|ref|ZP_07416074.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu001]
 gi|306782464|ref|ZP_07420801.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu002]
 gi|306786284|ref|ZP_07424606.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu003]
 gi|306790654|ref|ZP_07428976.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu004]
 gi|306795181|ref|ZP_07433483.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu005]
 gi|306799372|ref|ZP_07437674.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu006]
 gi|306805219|ref|ZP_07441887.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu008]
 gi|306809404|ref|ZP_07446072.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu007]
 gi|306969510|ref|ZP_07482171.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu009]
 gi|306973855|ref|ZP_07486516.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu010]
 gi|307081567|ref|ZP_07490737.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu011]
 gi|307086176|ref|ZP_07495289.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu012]
 gi|313660389|ref|ZP_07817269.1| GMP synthase [Mycobacterium tuberculosis KZN V2475]
 gi|61225467|sp|P0A5A1|GUAA_MYCTU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|61225468|sp|P0A5A2|GUAA_MYCBO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739642|sp|A1KP87|GUAA_MYCBP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739644|sp|A5U871|GUAA_MYCTA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800106|sp|C1AHL0|GUAA_MYCBT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1449391|emb|CAB01027.1| PROBABLE GMP SYNTHASE [GLUTAMINE-HYDROLYZING] GUAA (GLUTAMINE
           AMIDOTRANSFERASE) (GMP SYNTHETASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|31620174|emb|CAD95617.1| PROBABLE GMP SYNTHASE [GLUTAMINE-HYDROLYZING] GUAA (GLUTAMINE
           AMIDOTRANSFERASE) (GMP SYNTHETASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494969|emb|CAL73455.1| Probable GMP synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148507412|gb|ABQ75221.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148723131|gb|ABR07756.1| GMP synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis F11]
 gi|224774933|dbj|BAH27739.1| GMP synthase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321946|gb|ACT26549.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 1435]
 gi|289417866|gb|EFD15106.1| GMP synthase guaA [Mycobacterium tuberculosis T46]
 gi|289422052|gb|EFD19253.1| GMP synthase guaA [Mycobacterium tuberculosis CPHL_A]
 gi|289540560|gb|EFD45138.1| GMP synthase guaA [Mycobacterium tuberculosis K85]
 gi|289545387|gb|EFD49035.1| GMP synthase guaA [Mycobacterium tuberculosis T17]
 gi|289687752|gb|EFD55240.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289692701|gb|EFD60130.1| GMP synthase guaA [Mycobacterium tuberculosis T92]
 gi|289696113|gb|EFD63542.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289711085|gb|EFD75101.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis GM 1503]
 gi|289715121|gb|EFD79133.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis T85]
 gi|298496673|gb|EFI31967.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308213913|gb|EFO73312.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu001]
 gi|308324857|gb|EFP13708.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu002]
 gi|308329113|gb|EFP17964.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu003]
 gi|308332950|gb|EFP21801.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu004]
 gi|308336509|gb|EFP25360.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu005]
 gi|308340386|gb|EFP29237.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu006]
 gi|308344245|gb|EFP33096.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu007]
 gi|308348235|gb|EFP37086.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu008]
 gi|308352961|gb|EFP41812.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu009]
 gi|308356783|gb|EFP45634.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu010]
 gi|308360731|gb|EFP49582.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu011]
 gi|308364343|gb|EFP53194.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu012]
 gi|326905240|gb|EGE52173.1| GMP synthase guaA [Mycobacterium tuberculosis W-148]
 gi|328460175|gb|AEB05598.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 4207]
          Length = 525

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-- 77
           D   +  +SGGVDS+V AAL++R     IG         + +         +    A+  
Sbjct: 225 DGHAICGLSGGVDSAVAAALVQRA----IG--------DRLTCVFVDHGLLRAGERAQVQ 272

Query: 78  --RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              V  T   +    D  E F  A   V  P       G   +   +         +  V
Sbjct: 273 RDFVAAT-GANLVTVDAAETFLEALSGVSAPEGKRKIIGRQFIRAFE-------GAVRDV 324

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
                A+ L  G      +  G  G       +           +       L      P
Sbjct: 325 LDGKTAEFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDD-LKFTLVEP 374

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+GL 
Sbjct: 375 LRLLFKDEVRAVGRELGLP 393


>gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
 gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
          Length = 462

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 36/137 (26%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA-------GQD 72
           + ++VV +SGG DS    ALL    Y         +N R+  + +             + 
Sbjct: 19  NKKIVVGVSGGPDS---IALLH---Y--------FWNQRQQLQIELIAAHVDHMFRGEES 64

Query: 73  VYDARRV---CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
             DA  V   C    +        E  R  V      S  + +T           ++S  
Sbjct: 65  FQDAMFVKDYCRKKAIPF------EMERANVPEYMEKSGKSSQTAARD------CRYSFY 112

Query: 130 LSVTRQLGADVLATGHY 146
               ++ GA+ +A GH+
Sbjct: 113 QRTAKKYGAEYIALGHH 129


>gi|154150398|ref|YP_001404016.1| asparagine synthase [Candidatus Methanoregula boonei 6A8]
 gi|153998950|gb|ABS55373.1| asparagine synthase [Methanoregula boonei 6A8]
          Length = 334

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 18/62 (29%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V A+SGGVDS +VAAL +R   + + V ++                  D+  ARR  D +
Sbjct: 100 VTALSGGVDSGLVAALAQR---ECVAVGMK---------------GSHDLARARRAADLL 141

Query: 84  NV 85
            +
Sbjct: 142 GL 143


>gi|114566961|ref|YP_754115.1| NAD+ synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318036|sp|Q0AX10|NADE_SYNWW RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|114337896|gb|ABI68744.1| NH(3)-dependent NAD(+) synthetase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 249

 Score = 42.5 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 97/273 (35%), Gaps = 71/273 (26%)

Query: 23  VVVAMSGGVDS--------------SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68
           +V+ +SGGVDS               +   L      DV+                    
Sbjct: 26  IVLGVSGGVDSAVAAIIAKKAFPENCMTLLLPCES--DVV-------------------- 63

Query: 69  AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
              D  D++ + +  N+ + + D +  +   ++     SY   E           +K   
Sbjct: 64  ---DRMDSQALVEKFNIPYRIIDLDNAY--HLLSTQFESYLKCE----------GLK-GK 107

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           LL    +    ++A  +  ++R Y+      +  +C     +    Y        QL   
Sbjct: 108 LLRGNIKSRLRMMALYYSAQARNYLVLGTSNKSELCVGYSTK----YGDAGV-DLQL--- 159

Query: 189 RFPLGDMKKESVRDLAREMGLD--IADKSDSQDICFV--QQGKYFDVVKRINAGIALEGD 244
              LGD+ K  V +LA+ +G+   I +K  S  +      +G+     + ++  +A  G 
Sbjct: 160 ---LGDLLKREVYELAQFLGVPETIVNKPPSGGLWSGQTDEGEMGLTYEELDNYLA-SG- 214

Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277
               + +++ +  G++  +  +R+   VAM  P
Sbjct: 215 --DGSPEVINKIEGMMAGSQHKRKMPPVAMIPP 245


>gi|313679661|ref|YP_004057400.1| argininosuccinate synthase [Oceanithermus profundus DSM 14977]
 gi|313152376|gb|ADR36227.1| argininosuccinate synthase [Oceanithermus profundus DSM 14977]
          Length = 396

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+VV+A SGG+D+S++   L  + G +VI  T    +  +  + + +         ++ +
Sbjct: 1   MKVVLAYSGGLDTSIILKWLIEEYGAEVIAFT---ADIGQGDEVEEAREKALATGASKAI 57

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLSV 132
                      D  E F    + P   +       Y  G          R +    L+ +
Sbjct: 58  A---------LDLREEFVRDFVFPMFRAAPLYEGYYLLG------TSIARPLIAKYLVQI 102

Query: 133 TRQLGADVLATG 144
             Q GA+ ++ G
Sbjct: 103 AEQEGAEAISHG 114


>gi|239624850|ref|ZP_04667881.1| PP-loop domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521236|gb|EEQ61102.1| PP-loop domain-containing protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 290

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 26/129 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           +V V +SGG DS ++A  L++         L+   S      +          D R++  
Sbjct: 41  KVAVCISGGKDSMLLAKCLQQ---------LK-RQSGTEFGLEFIVMDPGYHPDNRKLIE 90

Query: 80  --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                +N+   +FD  + F + V+    S         PC  C   ++   L +  R+LG
Sbjct: 91  DNAALMNIPVRIFD-SDIF-DIVVDVDQS---------PCYLC-ARMRRGYLYAHARELG 138

Query: 138 ADVLATGHY 146
            + +A GH+
Sbjct: 139 CNKIALGHH 147


>gi|209885642|ref|YP_002289499.1| glutamine-dependent NAD(+) synthetase [Oligotropha carboxidovorans
           OM5]
 gi|209873838|gb|ACI93634.1| glutamine-dependent NAD(+) synthetase [Oligotropha carboxidovorans
           OM5]
          Length = 584

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++ +SGG+DS++  A+      D IGV        +         A + + DA R+   
Sbjct: 295 VLLGISGGIDSALCLAIAV----DAIGV-----ERVRGVMLPYRFTAKESIEDAARIARA 345

Query: 83  INVSHYVF 90
             + + V 
Sbjct: 346 FGIRYEVL 353


>gi|167569986|ref|ZP_02362860.1| Asparagine synthase family protein [Burkholderia oklahomensis
           C6786]
          Length = 416

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A  L++  G +  +  V L   +S          C  +D+  A RV
Sbjct: 223 VCAALSGGVDSSAGAIFLRKALGAEAPLAAVHLFSTSSPD--------CYERDM--AARV 272

Query: 80  CDTINVSHYVFDY--EERFRNAV 100
            D+I       D      F   +
Sbjct: 273 ADSIGAELICIDIDRHLPFSERI 295


>gi|146299552|ref|YP_001194143.1| NAD+ synthetase [Flavobacterium johnsoniae UW101]
 gi|146153970|gb|ABQ04824.1| NAD+ synthetase [Flavobacterium johnsoniae UW101]
          Length = 268

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 20 DMRV---VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
          + +V   V+ +SGGVDS+V + L  + G  V+ V + ++ +     R
Sbjct: 26 NAKVNGFVIGISGGVDSAVTSTLCAQTGLQVLCVEMPIHQAESQVSR 72


>gi|5360172|gb|AAD42892.1|AF158372_5 hypothetical protein [Flavobacterium johnsoniae UW101]
          Length = 72

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 20 DMRV---VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
          + +V   V+ +SGGVDS+V + L  + G  V+ V + ++ +     R
Sbjct: 26 NAKVNGFVIGISGGVDSAVTSTLCAQTGLQVLCVEMPIHQAESQVSR 72


>gi|124385910|ref|YP_001028328.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10229]
 gi|126448747|ref|YP_001081972.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10247]
 gi|237810923|ref|YP_002895374.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei MSHR346]
 gi|254360221|ref|ZP_04976491.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei 2002721280]
 gi|124293930|gb|ABN03199.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10229]
 gi|126241617|gb|ABO04710.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10247]
 gi|148029461|gb|EDK87366.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei 2002721280]
 gi|237506369|gb|ACQ98687.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei MSHR346]
          Length = 510

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLRLAHRYHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAEHGIRHVIYTFTKQDLLENIDDAVY-------------------YGEFFEKIDAIDSA 315

Query: 140 VLATGHYIRSR--LYVGDDGKRRRIMCRPMDLERDQS-------YFLFATTQQQLCDL 188
           +   G+YI ++  L V   G+    +    DL +  +       Y L    +  L  +
Sbjct: 316 IAHFGYYIANKLGLKVALCGEGSDEIFGGYDLFKTHAQPGALSLYRLNNLHRTDLQRV 373


>gi|323140469|ref|ZP_08075397.1| putative tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322415037|gb|EFY05828.1| putative tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 267

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 57/220 (25%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           ++ D      R++V +SGG DS ++ A+L     Y  I            +    +    
Sbjct: 21  IEFDMLQPGDRILVGLSGGKDSMLLTAMLAEIKKYSPIPF--------DLACYTVNGMFA 72

Query: 71  QDVYDA--RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
            +   A     C    ++HY  D         +   A+    G +  PC  C    + + 
Sbjct: 73  PNFPKAELEAFCAQFGLTHYSDD---------VDVMAAHEKKGGS--PCFTC-AYFRRAA 120

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC-- 186
                ++LG + +A  H+        DD                +++F+   T  QL   
Sbjct: 121 TNRRAQELGFNKVALAHH-------NDDAV--------------ETFFMNLVTSGQLRTF 159

Query: 187 -----------DLRFPLGDMKKESVRDLAREMGLDIADKS 215
                       +  PL   +++ +R+L  ++GL      
Sbjct: 160 LPVTPLSRSGITVLRPLLYYREQEIRELVAKLGLKPIKNP 199


>gi|291548151|emb|CBL21259.1| thiazole biosynthesis/tRNA modification protein ThiI [Ruminococcus
           sp. SR1/5]
          Length = 393

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + ++ +SGG+DS V   ++ + G  +  V         A          + V  AR V
Sbjct: 180 NGKAMLLLSGGIDSPVAGYMIAKRGVKIDAVYFH------APPYTSERAKQKVVDLARLV 233

Query: 80  CDTIN-VSHYVFDYEE 94
                 +  +V ++ +
Sbjct: 234 AKYSGPIRLHVVNFTD 249


>gi|153812693|ref|ZP_01965361.1| hypothetical protein RUMOBE_03100 [Ruminococcus obeum ATCC 29174]
 gi|149831209|gb|EDM86298.1| hypothetical protein RUMOBE_03100 [Ruminococcus obeum ATCC 29174]
          Length = 393

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + ++ +SGG+DS V   ++ + G  +  V         A          + V  A+ V
Sbjct: 180 NGKAMLLLSGGIDSPVAGYMIAKRGVKIEAVYFH------APPYTSERAKQKVVDLAKLV 233

Query: 80  CDTIN-VSHYVFDYEE 94
                 +  +V ++ +
Sbjct: 234 ARYSGPIRLHVVNFTD 249


>gi|330897080|gb|EGH28560.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 164

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +   +  +V+V +SGG DS       L+         +D++ V +           + 
Sbjct: 25  DFNMIEEGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELVPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|296168797|ref|ZP_06850482.1| GMP synthase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896531|gb|EFG76177.1| GMP synthase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 511

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 209 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 241


>gi|329298685|ref|ZP_08256021.1| argininosuccinate synthase [Plautia stali symbiont]
          Length = 405

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK +  G +V+   +       A           D+    +
Sbjct: 7   KKIVLAYSGGLDTSAIIPWLKENYGGCEVVA-FVANIGQDPA-----------DLEGVEK 54

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     +V D  E F +  + P          +Y  G +    +     V      
Sbjct: 55  KALQSGASECHVVDLREEFISEYVYPVLQTGALYEGTYLLGTSMARPIIAKAQV------ 108

Query: 131 SVTRQLGADVLATG 144
            +  ++GAD L  G
Sbjct: 109 ELALKVGADALCHG 122


>gi|330502229|ref|YP_004379098.1| ExsB protein [Pseudomonas mendocina NK-01]
 gi|328916515|gb|AEB57346.1| ExsB protein [Pseudomonas mendocina NK-01]
          Length = 224

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          D + V+ +SGG+DS+ V A+ + +GY               S   G     + +  A RV
Sbjct: 3  DKKAVILLSGGLDSATVVAMARAEGYAC----------YSMSFDYGQRHRAE-LQAAERV 51

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 52 ARQLGVVEHKVI 63


>gi|288556799|ref|YP_003428734.1| Queuosine biosynthesis protein QueC [Bacillus pseudofirmus OF4]
 gi|288547959|gb|ADC51842.1| Queuosine biosynthesis protein QueC [Bacillus pseudofirmus OF4]
          Length = 222

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + VV  SGG DS+       ++  +V  VT   ++  +   ++  C        AR+
Sbjct: 2  KQDKAVVVFSGGQDSTTCLFWALKEFKEVATVT---FDYGQRHSKEIEC--------ARK 50

Query: 79 VCDTINVSHYVFDY 92
          + D + VS +V D 
Sbjct: 51 IADELGVSFHVLDM 64


>gi|169349710|ref|ZP_02866648.1| hypothetical protein CLOSPI_00448 [Clostridium spiroforme DSM 1552]
 gi|169293785|gb|EDS75918.1| hypothetical protein CLOSPI_00448 [Clostridium spiroforme DSM 1552]
          Length = 404

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK +  Y+VI   + +    +    +           A++
Sbjct: 4   KVILAYSGGLD--TTAIIPWLKENYDYEVICCCIDVGQKDELDGLE---------ERAKK 52

Query: 79  VCDTINVSHYVFDYEERFRNAVIVP-------FASSYAAGE-TPLPCVDCNRTVKFSDLL 130
              T     Y+ +  E + +  I+P       F   Y  G  T  P +          L+
Sbjct: 53  CGAT---KLYIKNVVEEYVDDYIIPTVQADAVFEYKYLLGTATARPLIA-------KVLV 102

Query: 131 SVTRQLGADVLATG 144
            V RQ GA  +  G
Sbjct: 103 DVARQEGASAICHG 116


>gi|36955865|gb|AAQ87002.1| NH(3)-dependent NAD(+) synthetase [Polaribacter filamentus]
          Length = 264

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 39/197 (19%)

Query: 20  DMRV---VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + +V   V+ +SGG+DS+V + L  + GY  + V + ++ +     R     A      A
Sbjct: 22  NAKVNGFVIGVSGGIDSAVTSILCAKTGYPTLCVEMPIHQAEIQVSRAEEHIAQLKKRFA 81

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTR 134
                  NVS    D    F +        S    E  L     N    ++ + L     
Sbjct: 82  -------NVSEARVDLTSTFED--FKNVLPSVEHSE-KLDLSLANTRARLRMTTLYYFAA 131

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
             G  V  TG+       V D G          D   D                  P+ D
Sbjct: 132 LQGLLVAGTGN------KVEDFGVGFYTKY--GDGGVD----------------LSPIAD 167

Query: 195 MKKESVRDLAREMGLDI 211
           + K  V +LA  +G+  
Sbjct: 168 LMKSEVYELAAYLGVPN 184


>gi|254181731|ref|ZP_04888328.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1655]
 gi|184212269|gb|EDU09312.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1655]
          Length = 510

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLRLAHRYHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAEHGIRHVIYTFTKQDLLENIDDAVY-------------------YGEFFEKIDAIDSA 315

Query: 140 VLATGHYIRSR--LYVGDDGKRRRIMCRPMDLERDQS-------YFLFATTQQQLCDL 188
           +   G+YI ++  L V   G+    +    DL +  +       Y L    +  L  +
Sbjct: 316 IAHFGYYIANKLGLKVALCGEGSDEIFGGYDLFKTHAQPGALSLYRLNNLHRTDLQRV 373


>gi|257094644|ref|YP_003168285.1| Argininosuccinate synthase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047168|gb|ACV36356.1| Argininosuccinate synthase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 409

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            + V+A SGG+D+SV+   L+   G +V+  T                  G ++  AR  
Sbjct: 5   KKAVLAYSGGLDTSVILKWLQDTYGCEVVTFT-------------ADLGQGDELEAARPK 51

Query: 80  CDTINV---SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
                +   + Y+ D  E F    + P           Y  G +    +   R +     
Sbjct: 52  ALQFGIAPENIYIEDLREEFVRDYVFPMFRANTVYEGEYLLGTSIARPLIAKRMI----- 106

Query: 130 LSVTRQLGADVLATG 144
             +    GA+ +A G
Sbjct: 107 -EIANLTGAEAIAHG 120


>gi|212538631|ref|XP_002149471.1| GMP synthase [Penicillium marneffei ATCC 18224]
 gi|210069213|gb|EEA23304.1| GMP synthase [Penicillium marneffei ATCC 18224]
          Length = 542

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 26/191 (13%)

Query: 28  SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSH 87
           SGGVDS+V A L++      IG   +         R   C   +   +     + + ++ 
Sbjct: 239 SGGVDSTVGAKLMREA----IGDRFKAILIDNGFMRLNECEEVKKTLE-----EHLGINL 289

Query: 88  YVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-----QLGAD 139
            V +  E F +    V  P       G T    +     ++       T      +    
Sbjct: 290 TVVNAGELFMSRLAGVSDPEKKRKIIGSTF-IDLFEQEAIRIEKEAENTSNSGKVEWFLQ 348

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                  I S  + G     +         ER           Q L  L  PL  + K+ 
Sbjct: 349 GTLYPDVIESLSFRGPSATIKTHHNVGGLPER-------MMNGQGL-RLIEPLRLLFKDE 400

Query: 200 VRDLAREMGLD 210
           VR + R++G+ 
Sbjct: 401 VRAIGRQLGIH 411


>gi|167814354|ref|ZP_02446034.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 91]
          Length = 510

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLRLAHRYHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAEHGIRHVIYTFTKQDLLENIDDAVY-------------------YGEFFEKIDAIDSA 315

Query: 140 VLATGHYIRSR--LYVGDDGKRRRIMCRPMDLERDQS-------YFLFATTQQQLCDL 188
           +   G+YI ++  L V   G+    +    DL +  +       Y L    +  L  +
Sbjct: 316 IAHFGYYIANKLGLKVALCGEGSDEIFGGYDLFKTHAQPGALSLYRLNNLHRTDLQRV 373


>gi|28210299|ref|NP_781243.1| argininosuccinate synthase [Clostridium tetani E88]
 gi|30172774|sp|P59602|ASSY_CLOTE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|28202735|gb|AAO35180.1| argininosuccinate synthase [Clostridium tetani E88]
          Length = 398

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+S++   LK + Y  DVI V + +                 D+ + ++ 
Sbjct: 5   KVVLAYSGGLDTSIIIPWLKEN-YDLDVIAVCIDVGQDD-------------DMEEVKKK 50

Query: 80  CDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLG 137
                 V  YV D +E F    +     + A  E                 L+ +  + G
Sbjct: 51  AIKTGAVKVYVEDAKEEFVKDYVFKALKANALYEEKYMLGTSLARPLMAKKLVEIAHKEG 110

Query: 138 ADVLATG 144
           A  +  G
Sbjct: 111 AKYICHG 117


>gi|53724688|ref|YP_102067.1| asparagine synthase [Burkholderia mallei ATCC 23344]
 gi|67641475|ref|ZP_00440253.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia mallei
           GB8 horse 4]
 gi|121598552|ref|YP_994008.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei SAVP1]
 gi|167003918|ref|ZP_02269697.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei PRL-20]
 gi|254177034|ref|ZP_04883691.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei ATCC 10399]
 gi|254203751|ref|ZP_04910111.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei FMH]
 gi|254208727|ref|ZP_04915075.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei JHU]
 gi|52428111|gb|AAU48704.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia mallei
           ATCC 23344]
 gi|121227362|gb|ABM49880.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei SAVP1]
 gi|147745263|gb|EDK52343.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei FMH]
 gi|147750603|gb|EDK57672.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei JHU]
 gi|160698075|gb|EDP88045.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei ATCC 10399]
 gi|238522416|gb|EEP85860.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia mallei
           GB8 horse 4]
 gi|243060645|gb|EES42831.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei PRL-20]
          Length = 510

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLRLAHRYHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAEHGIRHVIYTFTKQDLLENIDDAVY-------------------YGEFFEKIDAIDSA 315

Query: 140 VLATGHYIRSR--LYVGDDGKRRRIMCRPMDLERDQS-------YFLFATTQQQLCDL 188
           +   G+YI ++  L V   G+    +    DL +  +       Y L    +  L  +
Sbjct: 316 IAHFGYYIANKLGLKVALCGEGSDEIFGGYDLFKTHAQPGALSLYRLNNLHRTDLQRV 373


>gi|73668003|ref|YP_304018.1| hypothetical protein Mbar_A0456 [Methanosarcina barkeri str.
          Fusaro]
 gi|72395165|gb|AAZ69438.1| conserved hypothetical ATP-binding protein [Methanosarcina
          barkeri str. Fusaro]
          Length = 205

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG--QDVYDARR 78
          MR+ V  SGG DSS+ A L+                         +C  G   +   A +
Sbjct: 1  MRISVLFSGGKDSSLSALLM----------------EPFFEIELVTCSFGLLPNGELAAK 44

Query: 79 VCDTINVSHYVFDYE 93
              +   H V   E
Sbjct: 45 TAKKLGFPHRVLSLE 59


>gi|15896861|ref|NP_350210.1| PP-loop superfamily ATPase [Clostridium acetobutylicum ATCC 824]
 gi|81529172|sp|Q97D53|QUEC_CLOAB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|15026727|gb|AAK81550.1|AE007858_11 PP-loop superfamily ATPase, confers aluminum resistance
          [Clostridium acetobutylicum ATCC 824]
 gi|325511035|gb|ADZ22671.1| PP-loop superfamily ATPase, confers aluminum resistance
          [Clostridium acetobutylicum EA 2018]
          Length = 222

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          ++ +    + +V  SGG DS+      K+   +V+ V+   ++  +  K +  C      
Sbjct: 1  MEISINKEKALVVFSGGQDSTTCLFWAKKRYKEVVAVS---FDYNQKHKLELEC------ 51

Query: 74 YDARRVCDTINVSHYVFDYE 93
            A+ +C    V H++ D +
Sbjct: 52 --AKDICKKHGVEHHILDMK 69


>gi|15842990|ref|NP_338027.1| GMP synthase [Mycobacterium tuberculosis CDC1551]
 gi|254233998|ref|ZP_04927323.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis C]
 gi|13883330|gb|AAK47841.1| GMP synthase [Mycobacterium tuberculosis CDC1551]
 gi|124599527|gb|EAY58631.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis C]
 gi|323717883|gb|EGB27072.1| GMP synthase guaA [Mycobacterium tuberculosis CDC1551A]
          Length = 525

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 38/199 (19%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-- 77
           D   +  +SGGVDS+V AAL++R     IG         + +         +    A+  
Sbjct: 225 DGHAICGLSGGVDSAVAAALVQRA----IG--------DRLTCVFVDHGLLRAGERAQVQ 272

Query: 78  --RVCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
              V  T   +    D  E F  A   V  P       G   +   +         +  V
Sbjct: 273 RDFVAAT-GANLVTVDAAETFLEALSGVSAPEGKRKIIGRQFIRAFE-------GAVRDV 324

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-P 191
                A+ L  G      +  G  G       +           +       L      P
Sbjct: 325 LDGKTAEFLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPDD-LKFTLVEP 374

Query: 192 LGDMKKESVRDLAREMGLD 210
           L  + K+ VR + RE+GL 
Sbjct: 375 LRLLFKDEVRAVGRELGLP 393


>gi|303243686|ref|ZP_07330027.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
 gi|302485928|gb|EFL48851.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
          Length = 306

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 23/124 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGG DS V   LL +D + V         +           +   + +   +   +
Sbjct: 82  ILAFSGGKDSVVALYLLLKD-FKV---------NPLCITVDNKYMSKGALKNCYNITRYL 131

Query: 84  NVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           NV   V   DY E F++++          GE+  PC  C+  +   ++  + + L  D +
Sbjct: 132 NVDWIVLNRDYTELFKDSI--------LRGES--PCRRCSELI-MREIWKMAKMLNIDKI 180

Query: 142 ATGH 145
            TGH
Sbjct: 181 ITGH 184


>gi|295109584|emb|CBL23537.1| thiazole biosynthesis/tRNA modification protein ThiI [Ruminococcus
           obeum A2-162]
          Length = 393

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + ++ +SGG+DS V   ++ + G  +  V         A          + V  A+ V
Sbjct: 180 NGKAMLLLSGGIDSPVAGYMIAKRGVKIEAVYFH------APPYTSERAKQKVVDLAKLV 233

Query: 80  CDTIN-VSHYVFDYEE 94
                 +  +V ++ +
Sbjct: 234 ARYSGPIRLHVVNFTD 249


>gi|229489580|ref|ZP_04383443.1| GMP synthase [Rhodococcus erythropolis SK121]
 gi|229323677|gb|EEN89435.1| GMP synthase [Rhodococcus erythropolis SK121]
          Length = 523

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 218 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 250


>gi|226305427|ref|YP_002765385.1| GMP synthetase [Rhodococcus erythropolis PR4]
 gi|226184542|dbj|BAH32646.1| GMP synthetase [Rhodococcus erythropolis PR4]
          Length = 523

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 218 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 250


>gi|68069147|ref|XP_676484.1| GMP synthetase [Plasmodium berghei strain ANKA]
 gi|56496203|emb|CAH95716.1| GMP synthetase, putative [Plasmodium berghei]
          Length = 544

 Score = 42.5 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 36/141 (25%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA------------------LL-KRDGYDVIGVT-- 51
           ++ K+  D  V+ AMSGG+DS+V AA                  LL K +G  V      
Sbjct: 236 NIKKHAHDHYVIAAMSGGIDSTVAAAMTHKIFKDRFYGIFIDNGLLRKNEGEKVYKFIKS 295

Query: 52  ----LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFAS- 106
               + +     +           D    R++   +        + E F  AV       
Sbjct: 296 TFPDMNITKIDASENFLNQLKGVTDPEQKRKIIGKL--------FIEEFEKAVYSMDIDI 347

Query: 107 --SYAAGETPLPCVDCNRTVK 125
             +Y    T  P +  ++  K
Sbjct: 348 EKTYLLQGTLYPDIIESKCSK 368


>gi|323345484|ref|ZP_08085707.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Prevotella oralis ATCC 33269]
 gi|323093598|gb|EFZ36176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Prevotella oralis ATCC 33269]
          Length = 444

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 19 KDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
          KD + VVA+SGG DS V   L LKR GY +       +   + S+R    C         
Sbjct: 20 KDSKYVVALSGGADS-VALLLTLKRLGYVIDAAHCNFHLRGEESQRDEEFCI-------- 70

Query: 78 RVCDTINVSHYVFDY 92
           +C   N+  +   +
Sbjct: 71 SLCKRENIRLHRSHF 85


>gi|326316969|ref|YP_004234641.1| NAD+ synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373805|gb|ADX46074.1| NAD+ synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 550

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++V A+     G D V  V +                A     DAR + 
Sbjct: 290 VLLGLSGGIDSALVLAIAVDALGADKVRAVMM-----------PSPYTADISWIDARDMA 338

Query: 81  DTINVSHYVFDYEERFR 97
           + + V +       +F 
Sbjct: 339 ERLGVRYDEIAIAPQFE 355


>gi|262306021|gb|ACY45603.1| gln amidotransferase [Nymphon unguiculatum-charcoti complex sp.
          SEM-1997]
          Length = 202

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 19/21 (90%)

Query: 22 RVVVAMSGGVDSSVVAALLKR 42
          +V+V +SGGVDS+V AAL+K+
Sbjct: 45 KVLVFISGGVDSAVCAALIKK 65


>gi|296109050|ref|YP_003615999.1| subunit of tRNA(5-methylaminomethyl-2-thiouridylate)
          methyltransferase [Methanocaldococcus infernus ME]
 gi|295433864|gb|ADG13035.1| subunit of tRNA(5-methylaminomethyl-2-thiouridylate)
          methyltransferase [Methanocaldococcus infernus ME]
          Length = 197

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          V +  SGG DSS+ A +LK+ GYDV  +T+                       A      
Sbjct: 2  VYLLFSGGKDSSLAALILKKLGYDVKLITVNF-------------GVIDSYKLAEETAKI 48

Query: 83 INVSHYV 89
          +   H V
Sbjct: 49 LGFEHRV 55


>gi|239617939|ref|YP_002941261.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506770|gb|ACR80257.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 469

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 29/138 (21%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK-------RDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
            +  +++VA+SGG DS    ALL        R G + I V     +              
Sbjct: 19  KQGEKILVAVSGGKDS---MALLHFLVSKKERLGCE-ICV--ANMDHGLRDD-----SGR 67

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           ++       C+  +V  Y        R  V     + Y      L   +  R V++  L 
Sbjct: 68  EEAVMIASFCEKHDVPFY------HERRDV-----TQYHKNNRGLSLEEAARIVRYDFLF 116

Query: 131 SVTRQLGADVLATGHYIR 148
           +   +LGAD +A  H++ 
Sbjct: 117 NAREKLGADKIALAHHLN 134


>gi|169795076|ref|YP_001712869.1| hypothetical protein ABAYE0921 [Acinetobacter baumannii AYE]
 gi|260551477|ref|ZP_05825661.1| queuosine biosynthesis protein queC [Acinetobacter sp. RUH2624]
 gi|260556562|ref|ZP_05828780.1| queuosine biosynthesis protein queC [Acinetobacter baumannii ATCC
          19606]
 gi|169148003|emb|CAM85866.1| conserved hypothetical protein; putative exported protein
          [Acinetobacter baumannii AYE]
 gi|260405471|gb|EEW98964.1| queuosine biosynthesis protein queC [Acinetobacter sp. RUH2624]
 gi|260409821|gb|EEX03121.1| queuosine biosynthesis protein queC [Acinetobacter baumannii ATCC
          19606]
 gi|322509050|gb|ADX04504.1| Queuosine biosynthesis protein queC [Acinetobacter baumannii
          1656-2]
 gi|323519032|gb|ADX93413.1| hypothetical protein ABTW07_2990 [Acinetobacter baumannii
          TCDC-AB0715]
          Length = 227

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-TLQLYNSRKASKRKGSCCAGQD 72
          ++KN +  R +V +SGG+DS+   A   +  Y+ I +  +  Y  R  ++          
Sbjct: 1  MEKNMRP-RAIVLLSGGLDSTTCLAW-AQARYECIAISFM--YGQRSTTE---------- 46

Query: 73 VYDARRVCDTINVSHYVFD 91
          +  A+ +     V H V +
Sbjct: 47 LDAAKALAQRAGVEHRVIN 65


>gi|295093682|emb|CBK82773.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus sp. ART55/1]
          Length = 408

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 24/132 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  R+ V +SGG DS ++A     LKR  ++     L+                  +  
Sbjct: 160 KEGDRIAVCISGGKDSFLMAKCFQELKR--HNKFPFELKFIVMDPGYSPANRKVIEDN-- 215

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                   +N+   +      F + +     S Y   ++  PC  C   ++   L S  +
Sbjct: 216 -----ARMLNIPIQI------FESDIFD---SVYNVEKS--PCYLC-ARMRRGHLYSYAK 258

Query: 135 QLGADVLATGHY 146
           +LG + +A GH+
Sbjct: 259 ELGCNKIALGHH 270


>gi|255024903|ref|ZP_05296889.1| GMP synthase [Listeria monocytogenes FSL J1-208]
          Length = 179

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
          D +V++A+SGGVDSSVV  L+ +  G  +  + 
Sbjct: 55 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF 87


>gi|242077782|ref|XP_002448827.1| hypothetical protein SORBIDRAFT_06g033930 [Sorghum bicolor]
 gi|241940010|gb|EES13155.1| hypothetical protein SORBIDRAFT_06g033930 [Sorghum bicolor]
          Length = 545

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 43/198 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+ +  G  +  V +     R   + +       D      
Sbjct: 238 DEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMTTFESD------ 291

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTR 134
               +++     D  E+F         S     E P       R +   + +        
Sbjct: 292 ----LHLPVTCVDASEQF--------LSKLKGVEDPE----QKRKIIGREFIAVFDDFAH 335

Query: 135 QLGADVLATGHYIRSRLYVGD---------DGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L   +     Y+       D          G+      +           +    +   
Sbjct: 336 KLEQKIGKRPEYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-------VGGLPKDMK 388

Query: 186 CDLRFPLGDMKKESVRDL 203
             L  PL  + K+ VR L
Sbjct: 389 LKLIEPLKLLFKDEVRKL 406


>gi|167464972|ref|ZP_02330061.1| Thiamine biosynthesis [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383691|ref|ZP_08057442.1| ThiI-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151903|gb|EFX44846.1| ThiI-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 402

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 58/187 (31%), Gaps = 37/187 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DS V   +  R G ++  V    Y       ++      + +  AR +    
Sbjct: 183 MLLLSGGIDSPVAGWMAMRRGLEIEAVHFHSYPYTSERAKQ------KVIELARILSRYG 236

Query: 84  N-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             +  ++  + E     +       Y         +   R   +     +  +  A  L 
Sbjct: 237 GIIKLHLVPFTE-----IQTRIHQEYRE----NLLITIYRRCMYRIAEKLAEKRKALALV 287

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-LRFPLGDMKKESVR 201
           TG  +                         Q+        + +   +  PL  + K+ + 
Sbjct: 288 TGESLGQVAS--------------------QTLTSMNVIGRVVEMPIIQPLVTLDKKEIV 327

Query: 202 DLAREMG 208
            +A+E+G
Sbjct: 328 KVAQEIG 334


>gi|163816026|ref|ZP_02207396.1| hypothetical protein COPEUT_02206 [Coprococcus eutactus ATCC 27759]
 gi|158448836|gb|EDP25831.1| hypothetical protein COPEUT_02206 [Coprococcus eutactus ATCC 27759]
          Length = 402

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 24/132 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            +  R+ V +SGG DS ++A     LKR  ++     L+                  +  
Sbjct: 156 KEGDRIAVCISGGKDSFLMAKCFQELKR--HNKFPFELKFIVMDPGYSPANRKVIEDN-- 211

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
                   +N+   +      F + +     S Y   ++  PC  C   ++   L S  +
Sbjct: 212 -----ARMLNIPIQI------FESDIFD---SVYNVEKS--PCYLC-ARMRRGHLYSYAK 254

Query: 135 QLGADVLATGHY 146
           +LG + +A GH+
Sbjct: 255 ELGCNKIALGHH 266


>gi|56964514|ref|YP_176245.1| thiamine biosynthesis protein ThiI [Bacillus clausii KSM-K16]
 gi|81365682|sp|Q5WEC6|THII_BACSK RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|56910757|dbj|BAD65284.1| thiamine biosynthesis protein ThiI [Bacillus clausii KSM-K16]
          Length = 400

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V+  +SGG+DS V A +L   G +V    L  ++    ++R     A Q V D  R   
Sbjct: 179 KVLHLLSGGIDSPVAAHMLMGRGAEVE--MLHFHSPPYTNER-----AKQKVIDLTRELT 231

Query: 82  TIN--VSHYVFDYEE 94
                ++ +   + +
Sbjct: 232 KFGRTITLHFVPFTD 246


>gi|41409587|ref|NP_962423.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254776776|ref|ZP_05218292.1| GMP synthase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|50400366|sp|Q73U79|GUAA_MYCPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41398418|gb|AAS06039.1| GuaA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 525

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 225 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 257


>gi|237736916|ref|ZP_04567397.1| PP family ATPase [Fusobacterium mortiferum ATCC 9817]
 gi|229420778|gb|EEO35825.1| PP family ATPase [Fusobacterium mortiferum ATCC 9817]
          Length = 281

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 29/140 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGS 66
           D +      R+ V +SGG DS ++  L +         ++V  +++              
Sbjct: 46  DFELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRSKNFEVAFISM------------NP 93

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                D+   ++  + +++   +FD        V          G    PC  C   ++ 
Sbjct: 94  GFGAMDMEQFKKNLEELDIPCEIFD------ANVWEVAFREDPEG----PCFLC-AKMRR 142

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L +   +LG + LA GH+
Sbjct: 143 GVLYNKVEELGYNKLALGHH 162


>gi|295674393|ref|XP_002797742.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis
           Pb01]
 gi|226280392|gb|EEH35958.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis
           Pb01]
          Length = 404

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 22/133 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV +  SGG DS+V+A++LK    R  Y   G+ L L +  +  K          +   +
Sbjct: 53  RVAIGASGGKDSTVLASVLKTLNDRHNY---GLHLTLLSIDEGIKGY----RDDSLETVK 105

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           R     ++   +  Y+E +    + V+         G+    C  C    +   L     
Sbjct: 106 RNAVQYSMPLEIVGYDELYGWTMDQVVA------EVGKKGN-CTYCGVFRR-QALDRGAA 157

Query: 135 QLGADVLATGHYI 147
           +LG   + TGH  
Sbjct: 158 KLGIKHVVTGHNA 170


>gi|218132958|ref|ZP_03461762.1| hypothetical protein BACPEC_00819 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991831|gb|EEC57835.1| hypothetical protein BACPEC_00819 [Bacteroides pectinophilus ATCC
           43243]
          Length = 411

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK +  Y+VI V                C   +++     
Sbjct: 9   KVILAYSGGLD--TTAIIPWLKENFDYEVICV-------------CADCGQEEELNGLDE 53

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD-LLSVTRQL 136
              +      Y+ D  + F    IVP   ++A  E              +  L+ + R+ 
Sbjct: 54  RAKSCGASKLYIEDLTDTFAEDYIVPCVQAHAVYEDKYLLGTSMARPAIAKRLVEIARKE 113

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 114 GASAICHG 121


>gi|254431212|ref|ZP_05044915.1| argininosuccinate synthase [Cyanobium sp. PCC 7001]
 gi|197625665|gb|EDY38224.1| argininosuccinate synthase [Cyanobium sp. PCC 7001]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  + V+A SGGVD+SV    LK +           +   +          G ++   RR
Sbjct: 4   RAKKAVLAYSGGVDTSVCIPYLKNE-----------WGVEEVITFAADLGQGDELEPIRR 52

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F      P   + A  E   P      R +    L+ + R++
Sbjct: 53  KALDAGASQSLVGDLIEPFITEFAFPAIRANALYEGRYPLSTALARPLIARRLVEIAREV 112

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 113 GADAVAHG 120


>gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
 gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
          Length = 509

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 25/126 (19%)

Query: 24  VVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+A+SGG DS V  A L++R G   +   L                +G+D+   R +   
Sbjct: 22  VLAVSGGGDS-VALAHLVRRAGRRAVVAYL---------DHALRPDSGEDLLFVRDLAFR 71

Query: 83  INVSHYVFDYEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +            +   V +   A     GE         R V+++ L  V +++GA  +
Sbjct: 72  LGFPF--------YGERVEVGRIAKE--RGENLEALA---REVRYAFLHRVAKEVGAKAI 118

Query: 142 ATGHYI 147
            T H +
Sbjct: 119 LTAHTL 124


>gi|195474928|ref|XP_002089738.1| GE22576 [Drosophila yakuba]
 gi|226711424|sp|B4P3W7|CTU1_DROYA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194175839|gb|EDW89450.1| GE22576 [Drosophila yakuba]
          Length = 343

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +V VA SGG DS+V+A +LK    R  Y   G+ L L +  +      +      +   +
Sbjct: 52  KVAVAASGGKDSTVLAHVLKLLNERHNY---GLELVLLSIDEG----ITGYRDDSLETVK 104

Query: 78  RVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           +  D   +   +  YEE +    + ++         G +   C  C    +   L    +
Sbjct: 105 QNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDRGAK 156

Query: 135 QLGADVLATGHYI 147
            LG D +ATGH  
Sbjct: 157 LLGVDSIATGHNA 169


>gi|159463686|ref|XP_001690073.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284061|gb|EDP09811.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 225

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC--CAGQDVYDARR 78
          MRVV  +SGG DS     L K+ G+DV+ +   L       +    C    G  +  A  
Sbjct: 1  MRVVALISGGKDSCYSMQLCKQHGHDVVALANLLPEESAPDELDSFCFQTVGHQLVGAYS 60

Query: 79 VCDTINVSH 87
           C  + +  
Sbjct: 61 AC--MGLPL 67


>gi|329123447|ref|ZP_08252011.1| thiamine biosynthesis protein ThiI [Haemophilus aegyptius ATCC
           11116]
 gi|327471029|gb|EGF16484.1| thiamine biosynthesis protein ThiI [Haemophilus aegyptius ATCC
           11116]
          Length = 485

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L          G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGTVHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|325096389|gb|EGC49699.1| VEG136 protein [Ajellomyces capsulatus H88]
          Length = 420

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  RV +  SGG DS+V+A++LK    R GY   G+ L L +  +  K           
Sbjct: 49  NQGERVAIGASGGKDSTVLASVLKTLNERHGY---GLELMLLSIDEGIKGYRDDSLETVK 105

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            +A + C    +   +  Y E +    + V+           T   C  C    +   L 
Sbjct: 106 RNAMQYC----MPLEIVGYGELYGWTMDQVVAEI-------GTKGNCTYCGVFRR-QALD 153

Query: 131 SVTRQLGADVLATGHYI 147
               +LG   + TGH  
Sbjct: 154 RGAAKLGIGHVVTGHNA 170


>gi|319776300|ref|YP_004138788.1| thiamine biosynthesis ATP pyrophosphatase [Haemophilus influenzae
           F3047]
 gi|317450891|emb|CBY87116.1| predicted thiamine biosynthesis ATP pyrophosphatase [Haemophilus
           influenzae F3047]
          Length = 485

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L          G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGTVHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|225557681|gb|EEH05967.1| VEG136 protein [Ajellomyces capsulatus G186AR]
          Length = 420

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            +  RV +  SGG DS+V+A++LK    R GY   G+ L L +  +  K           
Sbjct: 49  NQGERVAIGASGGKDSTVLASVLKTLNERHGY---GLELMLLSIDEGIKGYRDDSLETVK 105

Query: 74  YDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            +A + C    +   +  Y E +    + V+           T   C  C    +   L 
Sbjct: 106 RNAMQYC----MPLEIVGYGELYGWTMDQVVAEI-------GTKGNCTYCGVFRR-QALD 153

Query: 131 SVTRQLGADVLATGHYI 147
               +LG   + TGH  
Sbjct: 154 RGAAKLGIGHVVTGHNA 170


>gi|212697288|ref|ZP_03305416.1| hypothetical protein ANHYDRO_01856 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675737|gb|EEB35344.1| hypothetical protein ANHYDRO_01856 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 411

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +  +VV+A SGG+D+SV+   LK +G  +VI V          S   G     + +   
Sbjct: 10  NQAKKVVLAYSGGLDTSVMVTWLKENGAKEVICV----------SVDLGQVKNPEALE-- 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV----KFSDLLSV 132
           ++   +     Y  + E+ F          +  AG            +        L+ V
Sbjct: 58  KKALKSGASKFYNVNVEDEFIE---DYAFKTLKAGAKYENVYLLGTAIARPLIAKVLVDV 114

Query: 133 TRQLGADVLATG 144
             +  AD++  G
Sbjct: 115 AEKEKADLIVHG 126


>gi|150401530|ref|YP_001325296.1| putative ATP binding related protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014233|gb|ABR56684.1| putative ATP binding related protein [Methanococcus aeolicus
           Nankai-3]
          Length = 302

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 23/124 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++A SGG DS V   LL +D        L++         K    + + + +   +   +
Sbjct: 83  ILAFSGGKDSVVALYLLVKD--------LRIRPLCITVDNK--YMSNEALINCYNITRYL 132

Query: 84  NVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           NV   V   D+ + F   +          GE+  PC +C+  +   +L  V + L  D +
Sbjct: 133 NVDWMVINRDFTKLFEETI--------LKGES--PCRECSNKI-MGELRGVAKSLNIDKI 181

Query: 142 ATGH 145
            +GH
Sbjct: 182 VSGH 185


>gi|312201484|gb|ADQ44784.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Borrelia burgdorferi 297]
          Length = 528

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 232 NKKVILGLSGGTDSLVCALLIKKA 255


>gi|310644302|ref|YP_003949061.1| argininosuccinate synthase [Paenibacillus polymyxa SC2]
 gi|309249253|gb|ADO58820.1| Argininosuccinate synthase [Paenibacillus polymyxa SC2]
          Length = 411

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 71/211 (33%), Gaps = 46/211 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
           ++V+A SGG+D+SV+   LK   YD  +I  T     +    K +      + +   A +
Sbjct: 5   KIVLAYSGGLDTSVILKWLKET-YDAEIIAFT-----ADIGQKEELDGLEEKALATGASK 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           V        Y+ D  + F    I P           Y  G +    +   R V       
Sbjct: 59  V--------YIDDLRDEFAKDFIYPMFQAGALYEGQYLLGTSIARPLIAKRMV------D 104

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           +    GA  +A G         G+D + R  +         Q    +   +      +FP
Sbjct: 105 IAIAEGATAIAHG-----ATGKGND-QVRFELNAAALTPDIQVIAPWRLEEF---RNQFP 155

Query: 192 LGDMKKESVRDLAREMGLDI---ADKSDSQD 219
            G      +   A + G+ +   A K  S D
Sbjct: 156 -GR---AEMIAYAEKHGIPVTASAAKPYSMD 182


>gi|239927879|ref|ZP_04684832.1| asparagine synthase, glutamine-hydrolyzing [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436220|ref|ZP_06575610.1| asparagine synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291339115|gb|EFE66071.1| asparagine synthase [Streptomyces ghanaensis ATCC 14672]
          Length = 649

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
           D R+ V +SGG+DSS VAA+ ++           L      +   G      D  D AR 
Sbjct: 260 DRRLGVLLSGGLDSSAVAAVAQQL----------LPGRPVPTFSAGFADPDFDESDHARA 309

Query: 79  VCDTINVSHYVF 90
           V   +   H+V 
Sbjct: 310 VARHLGTEHHVV 321


>gi|223987646|ref|YP_002601114.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           [Borrelia burgdorferi 64b]
 gi|223929636|gb|ACN24346.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           [Borrelia burgdorferi 64b]
          Length = 511

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 215 NKKVILGLSGGTDSLVCALLIKKA 238


>gi|222100468|ref|YP_002535036.1| ExsB family protein [Thermotoga neapolitana DSM 4359]
 gi|221572858|gb|ACM23670.1| ExsB family protein [Thermotoga neapolitana DSM 4359]
          Length = 314

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 52/209 (24%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAG 70
           D+ +  KD ++ VA SGG DSS+VA L K          + L   R    +   G     
Sbjct: 7   DIRETVKDGKLYVAFSGGKDSSLVAILAK----------MALGEERVELVTVDWGPYTYE 56

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +     R   +   + H         +  V             P  C  C R VK   + 
Sbjct: 57  KSRKIVRSFAEKYGLKHTFIP-SNGLQEKVWRY---------GPS-CNACTRDVKTRLVK 105

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                 G  ++A+G           D   +  +                        +  
Sbjct: 106 EYA---GGCLVASGANAS-------DSWGKTGLK-------------------VFDGVYS 136

Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQD 219
           PL  + K  +  +   +G+++    +S  
Sbjct: 137 PLYRVGKAEINAMIDHLGIEVRKIGESAG 165


>gi|219723252|ref|YP_002476692.1| GMP synthase [Borrelia burgdorferi 156a]
 gi|219693051|gb|ACL34258.1| GMP synthase [Borrelia burgdorferi 156a]
          Length = 511

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 215 NKKVILGLSGGTDSLVCALLIKKA 238


>gi|225576389|ref|YP_002725400.1| GMP synthase [Borrelia sp. SV1]
 gi|225547503|gb|ACN93482.1| GMP synthase [Borrelia sp. SV1]
          Length = 511

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 215 NKKVILGLSGGTDSLVCALLIKKA 238


>gi|226246821|ref|YP_002776133.1| GMP synthase [Borrelia burgdorferi 29805]
 gi|226201716|gb|ACO38308.1| GMP synthase [Borrelia burgdorferi 29805]
          Length = 511

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 215 NKKVILGLSGGTDSLVCALLIKKA 238


>gi|225576228|ref|YP_002725245.1| GMP synthase [Borrelia burgdorferi 94a]
 gi|225546166|gb|ACN92180.1| GMP synthase [Borrelia burgdorferi 94a]
          Length = 511

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 215 NKKVILGLSGGTDSLVCALLIKKA 238


>gi|226246782|ref|YP_002776106.1| GMP synthase [Borrelia burgdorferi Bol26]
 gi|226202210|gb|ACO37880.1| GMP synthase [Borrelia burgdorferi Bol26]
          Length = 511

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           + +V++ +SGG DS V A L+K+ 
Sbjct: 215 NKKVILGLSGGTDSLVCALLIKKA 238


>gi|39995264|ref|NP_951215.1| argininosuccinate synthase [Geobacter sulfurreducens PCA]
 gi|47605391|sp|P61523|ASSY_GEOSL RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|39982026|gb|AAR33488.1| argininosuccinate synthase [Geobacter sulfurreducens PCA]
 gi|298504269|gb|ADI82992.1| argininosuccinate synthase [Geobacter sulfurreducens KN400]
          Length = 406

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 27/140 (19%)

Query: 14  LDKNPKD-MRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           + K  KD  ++V+A SGG+D+S++   LK   G +VI            S   G      
Sbjct: 1   MAKAHKDVKKIVLAYSGGLDTSIILKWLKNEYGCEVIAF----------SADLGQGDELA 50

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTV 124
            + D + +    +   Y+ D +E F    + P           Y  G +    +   R +
Sbjct: 51  PIRD-KAIATGAD-KVYIDDLKEEFVKDFVFPMFRANAIYEGHYLLGTSIARPLIAKRQM 108

Query: 125 KFSDLLSVTRQLGADVLATG 144
                  + +  GAD ++ G
Sbjct: 109 ------EIAKIEGADAVSHG 122


>gi|319897069|ref|YP_004135264.1| thiamine biosynthesis ATP pyrophosphatase [Haemophilus influenzae
           F3031]
 gi|317432573|emb|CBY80933.1| predicted thiamine biosynthesis ATP pyrophosphatase [Haemophilus
           influenzae F3031]
          Length = 485

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L          G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGTVHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|301163607|emb|CBW23159.1| asparagine synthetase B [glutamine-hydrolyzing] [Bacteroides
           fragilis 638R]
          Length = 558

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 236 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 288

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 289 REVAEYIGTVHHEINYTLQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 347

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                    ++    L       +R +  +  ++   +     L  ++S   +  
Sbjct: 348 MVLSGEGADEIFGGYLYFHKAPNARAFHEETVRKLSKLHLYDCLRANKSLAAWGV 402


>gi|257462842|ref|ZP_05627248.1| NAD synthetase [Fusobacterium sp. D12]
 gi|317060469|ref|ZP_07924954.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. D12]
 gi|313686145|gb|EFS22980.1| NH(3)-dependent NAD(+) synthetase [Fusobacterium sp. D12]
          Length = 259

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 50/195 (25%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +V++ +SGG+DS++VA L  +  G + V+ V +                + + +  A  
Sbjct: 22  QKVILGLSGGIDSALVAYLAVKALGKENVLTVKM-----------PYKTSSKESIEHANL 70

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSY---AAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           V   + +     +         I P   +Y    A  T L   +     + + L   +  
Sbjct: 71  VLRDLGLQEKTIE---------ITPMVDAYFSMQAEATSLRRGNYMARTRMAILFDQS-- 119

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
                      + + L +G   K   ++              + T    +     P+GD+
Sbjct: 120 ----------ALENALVIGTSNKTEILL-------------GYGTLFGDMACAFNPIGDI 156

Query: 196 KKESVRDLAREMGLD 210
            K+ V +L+R MG+ 
Sbjct: 157 YKKDVWELSRYMGVP 171


>gi|148906829|gb|ABR16560.1| unknown [Picea sitchensis]
          Length = 590

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 18/111 (16%)

Query: 25  VAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +SGG+DSS+VAA+  R   G +V     + + ++  +   G   +  D+  A+ V D 
Sbjct: 230 VLLSGGLDSSLVAAVASRYLAGTEVA----RQWGAKLHTFCIGLQGSP-DLKAAKEVADY 284

Query: 83  INVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPCVDCNRTVK 125
           +   H+ FD+  +        VI     +Y        TP+     +R +K
Sbjct: 285 LGSFHHEFDFTVQEGIDAIEEVI-YHVETYDVTTIRASTPM--FLMSRKIK 332


>gi|145629451|ref|ZP_01785249.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 22.1-21]
 gi|144978294|gb|EDJ88058.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 22.1-21]
          Length = 485

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L          G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGTVHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|118465034|ref|YP_883483.1| GMP synthase [Mycobacterium avium 104]
 gi|118166321|gb|ABK67218.1| glutamine-hydrolyzing GMP synthase [Mycobacterium avium 104]
          Length = 509

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 209 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 241


>gi|325578410|ref|ZP_08148545.1| thiamine biosynthesis protein ThiI [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160146|gb|EGC72275.1| thiamine biosynthesis protein ThiI [Haemophilus parainfluenzae ATCC
           33392]
          Length = 483

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 41/190 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSRYSSSHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +     +              V+         G+  +      + +       V ++   
Sbjct: 240 IA----IPF----------EGVVGEILEKVDNGQMGVVL----KRMMVRGASKVAQRFDI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG  +      G    +     R +D   D               +  PL    KE
Sbjct: 282 QAIVTGEAL------GQVSSQTLTNLRLIDEASD-------------ALVLRPLITHDKE 322

Query: 199 SVRDLAREMG 208
            +  +A+E+G
Sbjct: 323 QIIAMAKEIG 332


>gi|315652515|ref|ZP_07905499.1| thiamine biosynthesis protein ThiI [Eubacterium saburreum DSM 3986]
 gi|315485231|gb|EFU75629.1| thiamine biosynthesis protein ThiI [Eubacterium saburreum DSM 3986]
          Length = 394

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R ++ +SGG+DS V   ++ + G  V  V         A          + +  A+ V
Sbjct: 180 NGRAMLLLSGGIDSPVAGYMIAKRGVRVEAVYFH------APPYTSERAKRKVIELAQLV 233

Query: 80  CDTIN-VSHYVFDYEE 94
                 ++ ++ ++ +
Sbjct: 234 AMYNGPLNLHIINFTD 249


>gi|312793429|ref|YP_004026352.1| argininosuccinate synthase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180569|gb|ADQ40739.1| argininosuccinate synthase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +   +VI V + +         K           A +V 
Sbjct: 5   KVVLAYSGGLDTSVIIPWLKENFDCEVIAVVVDVGQEDDFEAIKERAYKTG----ASKV- 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F N  I P           Y  G +        R +    L+++ 
Sbjct: 60  -------YIEDAKEEFVNEYIFPTLKAGAIYEGKYLLGTSMA------RPLIAKKLVNIA 106

Query: 134 RQLGADVLATG 144
           ++  AD +A G
Sbjct: 107 KKENADAIAHG 117


>gi|309798878|ref|ZP_07693139.1| ExsB protein [Streptococcus infantis SK1302]
 gi|308117527|gb|EFO54942.1| ExsB protein [Streptococcus infantis SK1302]
          Length = 217

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  A+ + +  
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAKEIAEEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDLEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 TDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
               LA ++G
Sbjct: 164 ETWKLADQLG 173


>gi|260435821|ref|ZP_05789791.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
 gi|260413695|gb|EEX06991.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
          Length = 275

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 63/199 (31%), Gaps = 57/199 (28%)

Query: 25  VAMSGGVDSSVVAALLKRDGYD----VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VA SGGVDS++VAA+      D    V GV+  L              A   + +AR   
Sbjct: 31  VAYSGGVDSTLVAAMAYEAKGDAALAVTGVSPAL--------------APHLLREARDQA 76

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQLGAD 139
             I + H                     A  E   P    N   + F+    + + L   
Sbjct: 77  SWIGIPH------------------RECATAELNDPDYSNNPVDRCFACKRELHQHLQPI 118

Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196
             A G  +       DD G  R  +                        +R PL +  + 
Sbjct: 119 AAAAGDALVIDGVNLDDLGDHRPGINAARQAG-----------------VRSPLAELLID 161

Query: 197 KESVRDLAREMGLDIADKS 215
           K ++R L+R +G    DK 
Sbjct: 162 KAAIRALSRGLGFPWWDKP 180


>gi|255017709|ref|ZP_05289835.1| GMP synthase [Listeria monocytogenes FSL F2-515]
          Length = 267

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D +V++A+SGGVDSSVV  L+ +  G  +  + 
Sbjct: 223 DKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIF 255


>gi|183981170|ref|YP_001849461.1| GMP synthase, GuaA [Mycobacterium marinum M]
 gi|226739643|sp|B2HDP0|GUAA_MYCMM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|183174496|gb|ACC39606.1| GMP synthase, GuaA [Mycobacterium marinum M]
          Length = 525

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 225 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 257


>gi|160885754|ref|ZP_02066757.1| hypothetical protein BACOVA_03758 [Bacteroides ovatus ATCC 8483]
 gi|156108567|gb|EDO10312.1| hypothetical protein BACOVA_03758 [Bacteroides ovatus ATCC 8483]
          Length = 555

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 42/212 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERF----RNAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDALRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRD 202
              ++ L             P  +++K  VR+
Sbjct: 404 FLDKEFLDVAMNLNPKAKMCPGKEIEKRIVRE 435


>gi|153876460|ref|ZP_02003770.1| ExsB family protein [Beggiatoa sp. PS]
 gi|152067076|gb|EDN66230.1| ExsB family protein [Beggiatoa sp. PS]
          Length = 225

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V+ +SGG+DS+   A+ K  GY    +          S   G     + +  AR+V 
Sbjct: 2  KKAVILVSGGLDSTTTLAIAKSQGYACYAL----------SFDYGQRHRIE-LQAARQVA 50

Query: 81 DTINV 85
          + + V
Sbjct: 51 EHLGV 55


>gi|116247587|gb|ABJ90157.1| MoeF5 [Streptomyces ghanaensis ATCC 14672]
          Length = 645

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARR 78
           D R+ V +SGG+DSS VAA+ ++           L      +   G      D  D AR 
Sbjct: 256 DRRLGVLLSGGLDSSAVAAVAQQL----------LPGRPVPTFSAGFADPDFDESDHARA 305

Query: 79  VCDTINVSHYVF 90
           V   +   H+V 
Sbjct: 306 VARHLGTEHHVV 317


>gi|54022864|ref|YP_117106.1| GMP synthase [Nocardia farcinica IFM 10152]
 gi|81375915|sp|Q5Z1E9|GUAA_NOCFA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54014372|dbj|BAD55742.1| putative GMP synthase [Nocardia farcinica IFM 10152]
          Length = 524

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           D   +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 216 DGHAICGLSGGVDSAVAAALVQRAIGDRLTCVF 248


>gi|15668237|ref|NP_247030.1| hypothetical protein MJ_0066 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495775|sp|Q60377|Y066_METJA RecName: Full=Uncharacterized protein MJ0066
 gi|1590856|gb|AAB98046.1| sulfate adenylate transferase, subunit 2 (cysD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 480

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 29/169 (17%)

Query: 10  NSLDLDKN---PKDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKG 65
           N++   KN        V+VA SGG DS V   L LK  G D+  V +   ++    +   
Sbjct: 242 NAIGFIKNTYEKIKKPVMVAFSGGKDSLVTLILTLKALGKDIDVVFI---DTGLEFEET- 297

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCV-DCNRT 123
                ++V D  R      +   +     E F   V             P      C+  
Sbjct: 298 ----LKNVEDVER---HYGIK--IIRLRGENFWEKVKEYGI--------PARDYRWCSEI 340

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172
            K   L     +   D + +  ++  R Y   +   ++ + R   +++ 
Sbjct: 341 CKLEPLKKFIEENYEDDVLS--FVGIRKYESFNRATKKRIHRNTYIKKQ 387


>gi|226354846|ref|YP_002784586.1| Queuosine biosynthesis protein [Deinococcus deserti VCD115]
 gi|226316836|gb|ACO44832.1| putative Queuosine biosynthesis protein [Deinococcus deserti
           VCD115]
          Length = 237

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 71/204 (34%), Gaps = 31/204 (15%)

Query: 19  KDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +  R VV +SGG+DSS V  +  +RDGY    ++ +                  ++  A 
Sbjct: 4   QQKRAVVLLSGGLDSSTVLGIATRRDGYTCAALSFRY-----------GQRHTVELDRAA 52

Query: 78  RVCDTINVSHYVFDYE------ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           ++       H + D            +  I         G  P   V    TV  +  LS
Sbjct: 53  QIARHFGAEHRIIDINLGSFGGSALTDETITVPTDGADDGVIPPTYVPGRNTVFIAIGLS 112

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL----CD 187
           +   +GA+ +  G          D        CRP  LE  Q +     T+  L      
Sbjct: 113 LAEAIGAERIYLGINAVDYSGYPD--------CRPEYLEAYQ-HLANLATKAGLEGHGAA 163

Query: 188 LRFPLGDMKKESVRDLAREMGLDI 211
           L  PL  M K  + + A E+G+ +
Sbjct: 164 LVAPLLHMTKVDIVNAALELGVPV 187


>gi|30577690|emb|CAD18981.1| putative beta-lactam synthetase [Streptomyces cattleya]
          Length = 458

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 13/71 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           V +SGGVDSS VAAL  R   +V  +          S        G +   A    + + 
Sbjct: 201 VMLSGGVDSSSVAALAAR---EVTSL----------STYTVGTPFGDEFAQAAWFAERLG 247

Query: 85  VSHYVFDYEER 95
             H+   +E  
Sbjct: 248 SKHHELVFEPE 258


>gi|86156713|ref|YP_463498.1| NH(3)-dependent NAD(+) synthetase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773224|gb|ABC80061.1| NH(3)-dependent NAD(+) synthetase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 569

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV +SGG+DS++ A +     G + V+GV +                +G    DA  +  
Sbjct: 314 VVGLSGGIDSALTACVAAEALGAENVLGVAM-----------PSRYSSGHSREDAAELAR 362

Query: 82  TINVSH 87
            + V  
Sbjct: 363 NLGVGF 368


>gi|57239002|ref|YP_180138.1| putative glutamine-dependent NAD(+) synthetase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58578940|ref|YP_197152.1| putative glutamine-dependent NAD(+) synthetase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161081|emb|CAH57988.1| putative glutamine-dependent NAD+ synthetase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417566|emb|CAI26770.1| Probable glutamine-dependent NAD(+) synthetase [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 513

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
            +A  L   D  +     +V++ +SGG+DS++VA +         G+      S     +
Sbjct: 244 YQALMLALKDYVQKNSMTKVILGLSGGIDSALVATIAAD------GLGPANVLSFMLPTK 297

Query: 64  KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97
             S      + DA+     + +S+     E  F+
Sbjct: 298 YTS---ETSMIDAQECATRLGISYNTLSIETIFQ 328


>gi|298482839|ref|ZP_07001022.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp. D22]
 gi|298271039|gb|EFI12617.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp. D22]
          Length = 555

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 40/211 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDY-EERFRNAV--IVPFASSYA----AGETPLPC---VDCNRTVKF 126
           R V + I   H+  +Y  +   +AV  ++ F  +Y        TP+     V  +  +K 
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAVRDVIYFIETYDVTTVRASTPMYLLARVIKSMGIKM 344

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------- 179
                   ++    L        + +  +  ++   +     L  ++S   +        
Sbjct: 345 VLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVPF 404

Query: 180 TTQQQLCDL--------RFPLGDMKKESVRD 202
             ++ L             P  +++K  VR+
Sbjct: 405 LDKEFLDVAMNLNPKAKMCPGKNIEKRIVRE 435


>gi|288919727|ref|ZP_06414054.1| GMP synthase, small subunit [Frankia sp. EUN1f]
 gi|288348916|gb|EFC83166.1| GMP synthase, small subunit [Frankia sp. EUN1f]
          Length = 290

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
             R++  +SGGVDS+V AAL++R 
Sbjct: 230 GGRLICGLSGGVDSAVAAALVQRA 253


>gi|257466209|ref|ZP_05630520.1| PP-loop domain protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917367|ref|ZP_07913607.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691242|gb|EFS28077.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 248

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 31/136 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDG-----YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS     AL++        +++I + +        + +       + 
Sbjct: 35  EGDKIAVGISGGKDSLTTLNALIRIQKIAQVSFEIIPIHIH-----PNTDKASYQKMKEY 89

Query: 73  VYDARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  C+ + +       + EE   N                 PC  C R ++   L 
Sbjct: 90  -------CEKLGLELVVETTNLEEILFNE----------ENPMKNPCFLCGR-IRRGILY 131

Query: 131 SVTRQLGADVLATGHY 146
            + ++   + LA GH+
Sbjct: 132 RMLQERKINKLALGHH 147


>gi|257451990|ref|ZP_05617289.1| PP-loop domain protein [Fusobacterium sp. 3_1_5R]
 gi|317058539|ref|ZP_07923024.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684215|gb|EFS21050.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 248

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 31/136 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVA-ALLKRDG-----YDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS     AL++        +++I + +        + +       + 
Sbjct: 35  EGDKIAVGISGGKDSLTTLNALIRIQKIAQVSFEIIPIHIH-----PNTDKASYQKMKEY 89

Query: 73  VYDARRVCDTINVSH--YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
                  C+ + +       + EE   N                 PC  C R ++   L 
Sbjct: 90  -------CEKLGLELVVETTNLEEILFNE----------ENPMKNPCFLCGR-IRRGILY 131

Query: 131 SVTRQLGADVLATGHY 146
            + ++   + LA GH+
Sbjct: 132 RMLQERKINKLALGHH 147


>gi|237713576|ref|ZP_04544057.1| asparagine synthetase B [Bacteroides sp. D1]
 gi|262406327|ref|ZP_06082876.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           2_1_22]
 gi|294646570|ref|ZP_06724206.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides ovatus SD
           CC 2a]
 gi|294806635|ref|ZP_06765469.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446298|gb|EEO52089.1| asparagine synthetase B [Bacteroides sp. D1]
 gi|262355030|gb|EEZ04121.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           2_1_22]
 gi|292638093|gb|EFF56475.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides ovatus SD
           CC 2a]
 gi|294446171|gb|EFG14804.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 555

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 40/211 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDY-EERFRNAV--IVPFASSYA----AGETPLPC---VDCNRTVKF 126
           R V + I   H+  +Y  +   +AV  ++ F  +Y        TP+     V  +  +K 
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAVRDVIYFIETYDVTTVRASTPMYLLARVIKSMGIKM 344

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------- 179
                   ++    L        + +  +  ++   +     L  ++S   +        
Sbjct: 345 VLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVPF 404

Query: 180 TTQQQLCDL--------RFPLGDMKKESVRD 202
             ++ L             P  +++K  VR+
Sbjct: 405 LDKEFLDVAMNLNPKAKMCPGKNIEKRIVRE 435


>gi|83944365|ref|ZP_00956820.1| NAD(+) synthase [Sulfitobacter sp. EE-36]
 gi|83844909|gb|EAP82791.1| NAD(+) synthase [Sulfitobacter sp. EE-36]
          Length = 552

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGG+DS++VA +     G D +   +                +   + DA  V
Sbjct: 285 KKVLLGLSGGIDSAIVATIAVDALGADNVRCVM----------LPSEYTSQASLDDAESV 334

Query: 80  CDTINVSH 87
              +   +
Sbjct: 335 AKALGCRY 342


>gi|318043051|ref|ZP_07975007.1| argininosuccinate synthase [Synechococcus sp. CB0101]
          Length = 399

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  + V+A SGGVD+SV    LK +           +   +          G ++   R+
Sbjct: 3   RAKKAVLAYSGGVDTSVCIPYLKNE-----------WGVEEVITFAADLGQGDELEPIRQ 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F      P   + A  E   P      R +    L+ + R++
Sbjct: 52  KALDSGASQSIVGDLIEPFIREFAFPAIRANALYEGRYPLSTALARPLIARRLVEIAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|317050050|ref|YP_004117698.1| argininosuccinate synthase [Pantoea sp. At-9b]
 gi|316951667|gb|ADU71142.1| argininosuccinate synthase [Pantoea sp. At-9b]
          Length = 405

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK +  G +V+   +       A           D+    +
Sbjct: 7   KKIVLAYSGGLDTSAIIPWLKENYGGCEVVA-FVANIGQDPA-----------DLEGVEK 54

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     +V D  E F +  + P          +Y  G +    +     V      
Sbjct: 55  KALQSGASECHVVDLREEFISDYVYPVLQTGALYEGTYLLGTSMARPIIAKAQV------ 108

Query: 131 SVTRQLGADVLATG 144
            +  ++GAD L  G
Sbjct: 109 ELALKVGADALCHG 122


>gi|145554190|gb|ABP68893.1| unknown [Bacillus sp. PL-12]
          Length = 218

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+ + VV  SGG DS+       ++  +V  VT   ++  +  + +  C        A+ 
Sbjct: 2  KNEKAVVVFSGGQDSTTCLFWAMKEFKEVEAVT---FDYNQRXRTEIQC--------AKD 50

Query: 79 VCDTINVSHYVFDYE 93
          +   + V H+V D  
Sbjct: 51 IASGLGVKHHVLDMS 65


>gi|161528974|ref|YP_001582800.1| asparagine synthase [Nitrosopumilus maritimus SCM1]
 gi|160340275|gb|ABX13362.1| asparagine synthase [Nitrosopumilus maritimus SCM1]
          Length = 251

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 13/76 (17%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          D ++ +A SGGVDS++++ + K   YD+  +T+    S              D+  A+ V
Sbjct: 22 DKKIGIAYSGGVDSTLISKICKDMDYDITLLTIGFAES-------------HDILFAKEV 68

Query: 80 CDTINVSHYVFDYEER 95
           + +N  H++ + E  
Sbjct: 69 NEQLNYPHHILEIEPE 84


>gi|332175109|gb|AEE24363.1| argininosuccinate synthase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 412

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S +   LK             Y+    +         +++   R   
Sbjct: 7   KKVVLAYSGGLDTSAIIPWLKE-----------NYDCEVIAFAADVGQGDEELEGLREKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D +E F +  I P           Y  G +    +     V       +
Sbjct: 56  IKTGASECYIVDLKEEFVSDYIYPTITTGAVYEGQYLLGTSMARPIIAKAQV------EI 109

Query: 133 TRQLGADVLATG 144
            R++GAD L  G
Sbjct: 110 ARKVGADALCHG 121


>gi|312220546|emb|CBY00487.1| hypothetical protein [Leptosphaeria maculans]
          Length = 534

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  ++ +  SGG DS+V+A++LK     YD  G+ L L +  +  K          +   
Sbjct: 50  RGEKIAIGASGGKDSTVLASVLKTLNKRYD-YGLDLILLSIDEGIKGY----RDDSLETV 104

Query: 77  RRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
           +R  +   +   +  YEE +    + V+         G+    C  C    +   L    
Sbjct: 105 KRNAEQYGMELTILGYEELYGWTMDQVVE------QVGKKGN-CTYCGVFRR-QALDRGA 156

Query: 134 RQLGADVLATGHYI 147
            +LG   + TGH  
Sbjct: 157 ARLGVRHVVTGHNA 170


>gi|295083889|emb|CBK65412.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides
           xylanisolvens XB1A]
          Length = 555

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 40/211 (18%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDY-EERFRNAV--IVPFASSYA----AGETPLPC---VDCNRTVKF 126
           R V + I   H+  +Y  +   +AV  ++ F  +Y        TP+     V  +  +K 
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAVRDVIYFIETYDVTTVRASTPMYLLARVIKSMGIKM 344

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------- 179
                   ++    L        + +  +  ++   +     L  ++S   +        
Sbjct: 345 VLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVPF 404

Query: 180 TTQQQLCDL--------RFPLGDMKKESVRD 202
             ++ L             P  +++K  VR+
Sbjct: 405 LDKEFLDVAMNLNPKAKMCPGKNIEKRIVRE 435


>gi|260889780|ref|ZP_05901043.1| PP-loop family protein [Leptotrichia hofstadii F0254]
 gi|260860386|gb|EEX74886.1| PP-loop family protein [Leptotrichia hofstadii F0254]
          Length = 310

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 29/140 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL---LKRD---GYDVIGVTLQLYNSRKASKRKGS 66
           + +      R+ VA+SGG DS +++ L   LKR     +D++ +++              
Sbjct: 72  EFEMVKDGDRIAVAISGGKDSLLLSKLFQELKRASRTNFDLVFISM------------NP 119

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
                ++ + ++  + +N+   +++      + +    A   A      PC  C   ++ 
Sbjct: 120 GFNPANLNNLKKNLEHLNIPCEIYN------DNIFE-IAEKIAK---DYPCYMC-AKMRR 168

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L +    LG + LA GH+
Sbjct: 169 GSLYTKAASLGCNKLALGHH 188


>gi|254430158|ref|ZP_05043861.1| conserved hypothetical protein TIGR00268 [Cyanobium sp. PCC 7001]
 gi|197624611|gb|EDY37170.1| conserved hypothetical protein TIGR00268 [Cyanobium sp. PCC 7001]
          Length = 291

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 22 RVVVAMSGGVDSSVVAALLKRD 43
          R+VVA SGGVDS++VAA+    
Sbjct: 29 RIVVAYSGGVDSTLVAAIAVEQ 50


>gi|167835516|ref|ZP_02462399.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           thailandensis MSMB43]
          Length = 510

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLQLAHRHHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAEHGIRHVIYTFTKQDLLENIDDAVY-------------------YGEFFEKIDAIDST 315

Query: 140 VLATGHYIRSRL--YVGDDGKRRRIMCRPMDLERDQS-------YFLFATTQQQLCDL 188
           +   G+YI ++L   V   G+    +    DL +  +       Y L    +  L  +
Sbjct: 316 IAHFGYYIANKLGFKVALCGEGSDEIFGGYDLFKTHAQPGALSLYRLNNLHRTDLQRV 373


>gi|150026108|ref|YP_001296934.1| NH(3)-dependent NAD(+) synthetase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772649|emb|CAL44132.1| NH(3)-dependent NAD(+) synthetase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 268

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 61/194 (31%), Gaps = 46/194 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           V+ +SGG+DS+V A L  + G  V+ V + ++ ++    R            A  V DT 
Sbjct: 33  VIGISGGIDSAVTATLCAQTGLTVLCVEMPIHQAQSHINRAQEHIMQLKKNFA-NVTDT- 90

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQLGAD 139
                  +        V   F       +T +P    N   K +  L    +  R     
Sbjct: 91  -----RVNLTP-----VFESF-------KTEVPV--SNNEAKLNLSLANTRARLRMTSLY 131

Query: 140 VLATGH---YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
            LA  H      +   V D G          D   D                  P+ D+ 
Sbjct: 132 YLAGIHGLLVAGTGNKVEDFGVGFFTKY--GDGGVD----------------LSPIADLM 173

Query: 197 KESVRDLAREMGLD 210
           K  VR LA  + + 
Sbjct: 174 KSDVRALATYLNVP 187


>gi|239908960|ref|YP_002955702.1| hypothetical protein DMR_43250 [Desulfovibrio magneticus RS-1]
 gi|239798827|dbj|BAH77816.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 355

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 34/205 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K    +   SGG+DS + A  +   G DV+ +          S   G             
Sbjct: 2   KSYHALALFSGGLDSILAAKTIAAQGLDVLCLHF-------VSPYFGKPHKIDHWR---- 50

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-- 136
                 +     D  E +    ++     +  G+   PCVDC        +L   + +  
Sbjct: 51  --AIYGLDIIPVDVAEEYVA--MLSAGPVHGLGKFLNPCVDCKI-----LMLRRAKAMLA 101

Query: 137 --GADVLATGHYIRSRLYVG---------DDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
             GA  + +G  +  R              D   + I+ RP+  +R        +     
Sbjct: 102 DYGASFIISGEVVGQRPMSQRIDALNIIIRDSGTKGILLRPLCAKRLPESDAEKSGLVDR 161

Query: 186 CDLRFPLGDMKKESVRDLAREMGLD 210
             L    G  +K+ +  LA   GL 
Sbjct: 162 EKLFSMNGRGRKDQM-ALAEHYGLT 185


>gi|298527840|ref|ZP_07015244.1| argininosuccinate synthase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511492|gb|EFI35394.1| argininosuccinate synthase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 399

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 64/219 (29%), Gaps = 65/219 (29%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           +VV+A SGG+D+SV   +LK  +  YD  VI  T  L    +    +    +        
Sbjct: 6   KVVLAYSGGLDTSV---ILKWIQKTYDCEVIAFTADLGQEEELDGLEKKALSTGASKA-- 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLL 130
                     Y+ D ++ F    I P   +       Y  G +    +   R      + 
Sbjct: 61  ----------YIEDLQQEFVTDFIQPMFRAAAVYEGRYLLGTSIARPLIAKR------MA 104

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---D 187
            +    GA  +A G                           DQ  F    +   L     
Sbjct: 105 EIALAEGAQAVAHG---------------------ATGKGNDQVRF--ELSTMALAPSLR 141

Query: 188 LRFP-----LGDMKKESVRDLAREMGLDIADKSDSQDIC 221
           +  P     L       + + AR+  + +    +    C
Sbjct: 142 IIAPWREWDLHSRT--ELLEFARQNNIPVPVSQEKMYSC 178


>gi|317968336|ref|ZP_07969726.1| argininosuccinate synthase [Synechococcus sp. CB0205]
          Length = 399

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +  + V+A SGGVD+SV    LK +           +   +          G ++   R+
Sbjct: 3   RAKKAVLAYSGGVDTSVCIPYLKNE-----------WGVEEVITFAADLGQGDELEPIRQ 51

Query: 79  VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
                  S  +  D  E F      P   + A  E   P      R +    L+ + R++
Sbjct: 52  KALDSGASQSIVGDLIEPFIRDFAFPAIRANALYEGRYPLSTALARPLIARRLVEIAREV 111

Query: 137 GADVLATG 144
           GAD +A G
Sbjct: 112 GADAVAHG 119


>gi|312880289|ref|ZP_07740089.1| PP-loop domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783580|gb|EFQ23978.1| PP-loop domain protein [Aminomonas paucivorans DSM 12260]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           R+++ +SGG DS ++A  L+       +   LQ           G       + D     
Sbjct: 34  RILLGLSGGKDSILLALGLRELQRRSPVPFHLQ----ACFVDSHGEDSVPPSLQDF---A 86

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            ++ +      Y        I P            PC  C   ++   L S  ++ G +V
Sbjct: 87  ASLGIPLVTRSYP-------IFPILKEREEAH---PCSLC-AHLRRGILASCAQETGNNV 135

Query: 141 LATGHYIRSRLYV 153
           LA GH++   L  
Sbjct: 136 LALGHHLDDALET 148


>gi|242399762|ref|YP_002995187.1| ATP-binding protein [Thermococcus sibiricus MM 739]
 gi|242266156|gb|ACS90838.1| ATP-binding protein [Thermococcus sibiricus MM 739]
          Length = 229

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           MRV V  SGG DS+       + G++V   V++      +  +          + + + 
Sbjct: 3  KMRVAVLFSGGKDSTYALYWALKKGFEVKYLVSM----YSENDESYMYHVPNIHLTELQ- 57

Query: 79 VCDTINVSH 87
              IN+  
Sbjct: 58 -AKAINIPF 65


>gi|323345225|ref|ZP_08085448.1| transcription regulator ExsB [Prevotella oralis ATCC 33269]
 gi|323093339|gb|EFZ35917.1| transcription regulator ExsB [Prevotella oralis ATCC 33269]
          Length = 218

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 43/209 (20%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-----SKRKGSCCAGQDV 73
           KD  ++V  SGG+DS                VT+ LY  +       S   GS    +++
Sbjct: 2   KDSVIIV--SGGMDS----------------VTM-LYEYQDRIALGISFDYGSNHNAKEI 42

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT--------VK 125
             AR  C  + + H V D        V   F SS   G   +P    N           +
Sbjct: 43  PYARLHCKRLGIRHIVIDL-----GFVHQYFKSSLLEGADAIPEGSYNEGNMKSTVVPFR 97

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
              +LS+        +A  H+++  +     G          D     S    A T +++
Sbjct: 98  NGIMLSIAVG-----VAESHHLKYVMMANHGGDHAIYPDCRPDFVAAMSTAATAGTYEKV 152

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADK 214
           C +  P   + K  +    ++ G++ A+ 
Sbjct: 153 C-VLAPYTGITKTDIARRGQKFGVNFAET 180


>gi|313201479|ref|YP_004040137.1| tRNA(ile)-lysidine synthetase [Methylovorus sp. MP688]
 gi|312440795|gb|ADQ84901.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. MP688]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 41/204 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + R++VA+SGG+DS V+  LL       G  +    + +++       + +         
Sbjct: 15  EGRLLVALSGGLDSCVLLHLLATLPNNPGIRLSA--MHVHHGLSPHADQWA-------EH 65

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            +R+C +  +   V          V         A           R +++       R 
Sbjct: 66  CQRLCASHAIPLQVVHV------QVPRDSGQGLEAAA---------RHLRY----EAMRA 106

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
             AD +   H                 + R   +           +      L  PL D+
Sbjct: 107 AHADYVVLAH-----HQDDQAETVMLQLLRGAGMR----GLAAMASHDAQQRLLRPLLDI 157

Query: 196 KKESVRDLAREMGLDIADKSDSQD 219
            +  + + A +  L+  +   +QD
Sbjct: 158 SRAQLAEYAAQHQLEWVEDESNQD 181


>gi|298387348|ref|ZP_06996901.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           1_1_14]
 gi|298260017|gb|EFI02888.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           1_1_14]
          Length = 565

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 42/212 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPKDFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRD 202
              ++ L             P  +++K  VR+
Sbjct: 404 FLDKEFLDVAMALNPKAKMCPGKEIEKRIVRE 435


>gi|256419265|ref|YP_003119918.1| NAD+ synthetase [Chitinophaga pinensis DSM 2588]
 gi|256034173|gb|ACU57717.1| NAD+ synthetase [Chitinophaga pinensis DSM 2588]
          Length = 554

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 19/164 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + ++  SGG+DS+V  AL     G + V  + +                    V DA  
Sbjct: 298 TKAILGSSGGIDSAVTLALAAEALGKENVRAILM-----------PSPYSTEHSVDDAVA 346

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR--TVKFSDLLSVTRQL 136
           +   ++  + +    + +     +   + +  G       + N    ++ + L+ ++ + 
Sbjct: 347 LSKNLDNPYDIIRINDIYET--FLQTLNPFFEGRPFN-VAEENTQSRIRGNLLMGLSNKF 403

Query: 137 GADVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFA 179
           G  +L T +        G   G     +    D+ + Q Y L  
Sbjct: 404 GYILLNTSNKSELSTGYGTLYGDMAGGLAVLGDVYKMQVYALAR 447


>gi|157414313|ref|YP_001485179.1| argininosuccinate synthase [Prochlorococcus marinus str. MIT 9215]
 gi|166989394|sp|A8G7L2|ASSY_PROM2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157388888|gb|ABV51593.1| Argininosuccinate synthase [Prochlorococcus marinus str. MIT 9215]
          Length = 404

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGGVD+SV    LK++           Y   +          G+D+   R+  
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKKE-----------YGISEVITFVADLGQGEDLELIRQKA 53

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                S  +  +    F      P   + A      P      R +   +L+++ R+  A
Sbjct: 54  LNSGASQSIVGNLVNSFVERYAFPAIRANALYLDKYPLSTALARPLIAENLVNIAREFSA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|29345961|ref|NP_809464.1| asparagine synthetase B [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337855|gb|AAO75658.1| asparagine synthetase B, glutamine-hydrolyzing [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 559

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 42/212 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPKDFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRD 202
              ++ L             P  +++K  VR+
Sbjct: 404 FLDKEFLDVAMALNPKAKMCPGKEIEKRIVRE 435


>gi|326490716|dbj|BAJ90025.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1010

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 58/189 (30%), Gaps = 25/189 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+    G  +  V +     R   + +       D      
Sbjct: 235 DEHVICALSGGVDSTVAATLVHNAIGDRLHCVFVDNGLLRYKEQERVMSTFNSD------ 288

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  E+F +    V  P       G   +   D      F+ +L     
Sbjct: 289 ----LHLPVTCIDASEKFLSELKGVKDPETKRKIIGREFIVVFDE-----FARMLEQKLG 339

Query: 136 LGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              + L  G  Y          G  R                +    +     L  PL  
Sbjct: 340 KRPEYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-----VGGLPKDMKLKLIEPLKL 394

Query: 195 MKKESVRDL 203
           + K+ VR L
Sbjct: 395 LFKDEVRKL 403


>gi|319407350|emb|CBI80995.1| NH3-dependent NAD synthetase [Bartonella sp. 1-1C]
          Length = 558

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++  SGG+DS++ AA+     G + V  V +                + + + DA+   
Sbjct: 293 VLLGFSGGIDSALCAAIAVDALGAERVCAVMM-----------PYYYTSQESLKDAKDCA 341

Query: 81  DTINVSHYVF 90
             +   + + 
Sbjct: 342 RLLGCRYEII 351


>gi|257871355|ref|ZP_05651008.1| PP-loop family protein [Enterococcus gallinarum EG2]
 gi|257805519|gb|EEV34341.1| PP-loop family protein [Enterococcus gallinarum EG2]
          Length = 461

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 53/210 (25%)

Query: 24  VVAMSGGVDSSVVAALLK------RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++A+S GVDS V   LL       + G    GV    +N R+AS  +        + D  
Sbjct: 22  LLAVSTGVDSMV---LLHVIEELFQQG--TFGVAHVNHNLREASDDE-----AAFLKDY- 70

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP--LPCVDCNRTVKFSDLLSVTRQ 135
             C T  + +Y           V             P         R  ++         
Sbjct: 71  --CQTRGIPYY---------ERVWQD----------PPQNGIEAAAREFRYHFFAETMTL 109

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL---CDLRFPL 192
              D L T H+        DD     +M    +             ++Q      L  P 
Sbjct: 110 QSYDWLLTAHHA-------DDQMETMLMKMVREGRLQN---ASGIKRKQPFGNGYLIRPF 159

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICF 222
             + KE +RD AR  G+   +   +Q   F
Sbjct: 160 LTIAKEEIRDYARRRGIAYFEDETNQQTLF 189


>gi|303286249|ref|XP_003062414.1| asparagine synthase [Micromonas pusilla CCMP1545]
 gi|226455931|gb|EEH53233.1| asparagine synthase [Micromonas pusilla CCMP1545]
          Length = 672

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 19/169 (11%)

Query: 24  VVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            V +SGG+DSS    +     K         T    +               D+  AR V
Sbjct: 247 AVLLSGGLDSSLITSIAVRHKKEA-------TNTFGSDEPVHSFSIGIKGAPDLVAARAV 299

Query: 80  CDTINVSHYVFDYEERFRNAV---IVPFASSYAAGETPLPCVDCNRTVK---FSDLL--S 131
            + +   H+   +           IV    ++      +P     R +K   F  +L   
Sbjct: 300 AEQLGTVHHEVHFTPEEALDALPDIVYHLETFEQVRASVPMYLLCRHIKSLGFKMVLSGE 359

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
              +L    L       +  +  +  ++   + +   L  ++S   +  
Sbjct: 360 GADELFGGYLYFHKAPDAAEFHRECVRKTTRLHQWDVLRANKSTMAWGI 408


>gi|315231295|ref|YP_004071731.1| queuosine biosynthesis QueC-like ATPase [Thermococcus barophilus
          MP]
 gi|315184323|gb|ADT84508.1| queuosine biosynthesis QueC-like ATPase [Thermococcus barophilus
          MP]
          Length = 242

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 12/79 (15%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
          R VV  SGG+DS+      K++  +VI +T+  Y S +                A     
Sbjct: 3  RAVVLFSGGLDSTACLYWAKKNYDEVIMLTI-NYGSNEERATNKV---------AEFFSK 52

Query: 82 TINVSHYVF--DYEERFRN 98
           +N+   +   D+ E F  
Sbjct: 53 ELNIPLKIIKLDFLEEFSK 71


>gi|168217180|ref|ZP_02642805.1| argininosuccinate synthase [Clostridium perfringens NCTC 8239]
 gi|182380756|gb|EDT78235.1| argininosuccinate synthase [Clostridium perfringens NCTC 8239]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + G +VI V              G+    +++   +   
Sbjct: 6   KVILAYSGGLDTSIIIPWLKENYGCEVIAV-------------VGNVGQSEELVGLKEKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  + F    I P           Y  G +        R +    L+ +
Sbjct: 53  IKTGASKIYIEDLTKEFVEDYIFPTIQAGAKYEGKYLLGTSFA------RPIIAKRLVEI 106

Query: 133 TRQLGADVLATG 144
            +  GAD +  G
Sbjct: 107 AKLEGADAICHG 118


>gi|315924578|ref|ZP_07920797.1| thiamine biosynthesis protein ThiI [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622108|gb|EFV02070.1| thiamine biosynthesis protein ThiI [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 395

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +  + +SGG+DS V   ++ + G   I V         +          + +  A+ +  
Sbjct: 185 KAALLLSGGIDSPVAGYMMAKRGIRPIAVYFH------SFPFTSDRAKEKVIDLAKILTQ 238

Query: 82  TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQ 135
               +S YV  + +  +  ++               C +   T+     +      +  Q
Sbjct: 239 YTGRMSLYVVPFTDI-QTKIVE-------------VCPERQTTLIIRRFMMRIAEKIAEQ 284

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            GA  L TG  +        +G                   L AT       +  PL  M
Sbjct: 285 NGALSLITGESLGQVASQTQEG-------------------LAATGDVVAMPVLRPLIGM 325

Query: 196 KKESVRDLAREMG 208
            K+ + ++A+++G
Sbjct: 326 DKQEIVEIAQDIG 338


>gi|303326010|ref|ZP_07356453.1| PP-loop family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863926|gb|EFL86857.1| PP-loop family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 303

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 61/196 (31%), Gaps = 44/196 (22%)

Query: 24  VVAMSGGVDS--SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VA SGG+DS     AA L   G DV+ +  +           G     ++   A +   
Sbjct: 46  AVAFSGGLDSRFLCHAARLC--GCDVLALHAR-----------GPHIPPEESARAAQWAR 92

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             ++   + D+          P A         LP V  N                  ++
Sbjct: 93  ENSLPLLLVDF---------DPLA---------LPEVAANSR-------ERCYGCKKGLI 127

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
           AT            D  RR  +        D   F           +R PL +  + KE+
Sbjct: 128 ATLRMALRETEGERDESRR--LLCDGSNADDLRAFRPGLRALAEAGVRSPLAEAGLSKET 185

Query: 200 VRDLAREMGLDIADKS 215
           +R LA   GLD  ++ 
Sbjct: 186 IRALAASTGLDRPEQK 201


>gi|289167420|ref|YP_003445689.1| queuosine biosynthesis protein queC [Streptococcus mitis B6]
 gi|288906987|emb|CBJ21821.1| queuosine biosynthesis protein queC [Streptococcus mitis B6]
          Length = 217

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  A+ +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAQEIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDLEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQQGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 TDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMEYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|260774722|ref|ZP_05883626.1| argininosuccinate synthase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609378|gb|EEX35529.1| argininosuccinate synthase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 404

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 45/141 (31%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVVA SGG+D+SV+   LK             Y+          C     V D  +  +
Sbjct: 8   KVVVAYSGGLDTSVIIPWLKE-----------NYD----------CEVVAFVADVGQGAE 46

Query: 82  TI-NV----------SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRT 123
            +  +            YV D +E      I P           Y  G +    +     
Sbjct: 47  ELEGIEAKAKASGASECYVADLKEEMVADYIYPTLKTGAYYEGKYLLGTSMARPIIAKAQ 106

Query: 124 VKFSDLLSVTRQLGADVLATG 144
           V       V R++GAD L  G
Sbjct: 107 V------EVARKVGADALCHG 121


>gi|44804828|gb|AAS47712.1| guanosine monophosphate synthase [Cryptosporidium parvum]
          Length = 684

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 56/245 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDS+V  ALL +  G D V+G+ +     RK   +                 
Sbjct: 257 VLLFLSGGVDSTVTFALLNKALGQDKVLGLHIDNGFMRKNESKNIELLY----------- 305

Query: 81  DTINVS-HYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                    + DY   F N    +  P     A GE           +   ++    ++ 
Sbjct: 306 HKFGFKNFIIKDYSNSFLNIIKNITDPQKKRMAIGE---------HFINIKNIF--IQEQ 354

Query: 137 GAD----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             D    +LA G      +  G  G +     +      D    ++   ++ L  +  PL
Sbjct: 355 NFDPNNWLLAQGTLYPDIIESG--GTKNSNTIKTHHNRVD---MIYDLIKKGL--IIEPL 407

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            ++ K+ VR + +++GL                     +++    G  L  +++  +G+ 
Sbjct: 408 RELYKDEVRMIGKKIGL-----------------NDELIMRHPFPGPGLSINVICYDGKS 450

Query: 253 LGRHN 257
              ++
Sbjct: 451 WNEND 455


>gi|66356318|ref|XP_625300.1| GMP synthase [Cryptosporidium parvum Iowa II]
 gi|46226272|gb|EAK87292.1| GMP synthase [Cryptosporidium parvum Iowa II]
          Length = 691

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 56/245 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDS+V  ALL +  G D V+G+ +     RK   +                 
Sbjct: 264 VLLFLSGGVDSTVTFALLNKALGQDKVLGLHIDNGFMRKNESKNIELLY----------- 312

Query: 81  DTINVS-HYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
                    + DY   F N    +  P     A GE           +   ++    ++ 
Sbjct: 313 HKFGFKNFIIKDYSNSFLNIIKNITDPQKKRMAIGE---------HFINIKNIF--IQEQ 361

Query: 137 GAD----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
             D    +LA G      +  G  G +     +      D    ++   ++ L  +  PL
Sbjct: 362 NFDPNNWLLAQGTLYPDIIESG--GTKNSNTIKTHHNRVD---MIYDLIKKGL--IIEPL 414

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
            ++ K+ VR + +++GL                     +++    G  L  +++  +G+ 
Sbjct: 415 RELYKDEVRMIGKKIGL-----------------NDELIMRHPFPGPGLSINVICYDGKS 457

Query: 253 LGRHN 257
              ++
Sbjct: 458 WNEND 462


>gi|283953651|ref|ZP_06371182.1| exsB protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283794692|gb|EFC33430.1| exsB protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 226

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 43/209 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + +  +SGG+DS++ A L K++ Y +I +    ++  + ++ K   C         ++C
Sbjct: 3   KKALCIISGGMDSTLCAYLAKKEDYKIIALH---FDYEQRTQEKERDCFE-------QIC 52

Query: 81  DTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN----------RTVKF--S 127
             + V   Y+ D    F   +                 +  N            V F   
Sbjct: 53  KALKVEKSYILDVS--FIKDIGGNAL------TDKNIDIPKNELCINDTPPITYVPFRNG 104

Query: 128 DLLSV----TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183
             LS+      +   + +  G        V +DG      C    +++ Q +    T++ 
Sbjct: 105 IFLSIAGSLAEKENCESIFIG-------VVEEDGSGYPD-CTDEFIQKAQKFINEGTSKN 156

Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIA 212
               ++ PL  + K  +  LA +  + + 
Sbjct: 157 FKVCIKTPLVRLNKAQIVKLALKENVPLE 185


>gi|260914106|ref|ZP_05920579.1| thiamine biosynthesis protein ThiI [Pasteurella dagmatis ATCC
           43325]
 gi|260631739|gb|EEX49917.1| thiamine biosynthesis protein ThiI [Pasteurella dagmatis ATCC
           43325]
          Length = 480

 Score = 42.1 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 35/187 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R  ++
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSES 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       +  + G   + 
Sbjct: 235 HKVRFVAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASRIAERFGIQAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKESVR 201
           TG                      +     Q+        +    L   PL    KE + 
Sbjct: 286 TGE--------------------ALGQVSSQTLTNLRLIDEASNCLVLRPLITHDKEQII 325

Query: 202 DLAREMG 208
            +A+E+G
Sbjct: 326 AMAKEIG 332


>gi|330431000|gb|AEC16059.1| thiamine biosynthesis protein ThiI [Gallibacterium anatis UMN179]
          Length = 487

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 35/187 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L          G+         A  + + 
Sbjct: 180 VLSLISGGFDSGVSSYMLLRRGCRVHYCFFNL---------GGAAHEIGVKQMAYHIWNR 230

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
              SH V  +       V+         G+  +      + +       V  +     + 
Sbjct: 231 YGSSHKVR-FVAINFEKVVAEILEKIDNGQMGVVL----KRMMVRAASKVADRFQIQAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKESVR 201
           TG                      +     Q+        +    L   PL    KE + 
Sbjct: 286 TGE--------------------ALGQVSSQTLTNLRLIDEAADCLVLRPLISSDKEQII 325

Query: 202 DLAREMG 208
            +A+++G
Sbjct: 326 AMAKQIG 332


>gi|315636553|ref|ZP_07891789.1| transcription regulator ExsB [Arcobacter butzleri JV22]
 gi|315479202|gb|EFU69899.1| transcription regulator ExsB [Arcobacter butzleri JV22]
          Length = 228

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + +  +SGG+DS++ + + K+DG+++I V              G     +++   + +C
Sbjct: 7  KKAICILSGGMDSTLSSYIAKKDGFEIIAVHF----------NYGQRTQNRELKAFKDIC 56

Query: 81 DTINVS 86
          + +++ 
Sbjct: 57 NELDIK 62


>gi|255322169|ref|ZP_05363315.1| argininosuccinate synthase [Campylobacter showae RM3277]
 gi|255300542|gb|EET79813.1| argininosuccinate synthase [Campylobacter showae RM3277]
          Length = 407

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YKCEVVTF-----------TADIGQGEELEPARQKA 53

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGET-PLPCVDCNRTVKFSDL 129
             + +     ++ D +E F    + P           Y  G +   P +   +       
Sbjct: 54  LELGIKPENIFIEDLKEEFARDFVFPMFRANAVYEGEYLLGTSIARPLIAKKQ------- 106

Query: 130 LSVTRQLGADVLATG 144
             +  ++GAD ++ G
Sbjct: 107 AEIAAKVGADGVSHG 121


>gi|225010580|ref|ZP_03701051.1| asparagine synthase (glutamine-hydrolyzing) [Flavobacteria
           bacterium MS024-3C]
 gi|225005409|gb|EEG43360.1| asparagine synthase (glutamine-hydrolyzing) [Flavobacteria
           bacterium MS024-3C]
          Length = 556

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 31/177 (17%)

Query: 25  VAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVY 74
           V +SGG+DSSV +A+ K+            +   S   +                  D+ 
Sbjct: 232 VLLSGGLDSSVTSAIAKKYAQ---------KRIESGDTTDAWWPQLHSFSVGLEGSPDLA 282

Query: 75  DARRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRT 123
            AR+V D I   H+   +  +        VI     +Y        TP+     V  +  
Sbjct: 283 AARKVADHIGTVHHEIKFTIQEGLDAIKDVI-YNLETYDITTIRASTPMYLMARVIKSMG 341

Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
           +K         +L    L       ++ +  +  ++   +     L  ++S   +  
Sbjct: 342 IKMVLSGEGADELFGGYLYFHKAPSAKDFHEETVRKLDKLHMYDCLRANKSLAAWGI 398


>gi|210609821|ref|ZP_03288128.1| hypothetical protein CLONEX_00312 [Clostridium nexile DSM 1787]
 gi|210152748|gb|EEA83754.1| hypothetical protein CLONEX_00312 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK +  YDVI   +              C  G+++     
Sbjct: 4   KVVLAYSGGLD--TTAIIPWLKENFDYDVICCCI-------------DCGQGEELDGLEE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQL 136
                     Y+ +  + F +  IVP   + A  E                 L+ + R+ 
Sbjct: 49  RAKLSGASKLYIENIIDEFCDDYIVPCVQANAIYENKYLLGTSMARPGIAKKLVEIARKE 108

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 109 GATAICHG 116


>gi|58267828|ref|XP_571070.1| mitochondrion protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134112329|ref|XP_775140.1| hypothetical protein CNBE4140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74684970|sp|Q5KGC1|CTU1_CRYNE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|50257792|gb|EAL20493.1| hypothetical protein CNBE4140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227304|gb|AAW43763.1| mitochondrion protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 363

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 18/135 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL--KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +  RV +  SGG DS+V+A +L      YD  G+ L L +  +      +      +  
Sbjct: 50  KRGERVAIGASGGKDSTVLAHVLSVLNKRYD-YGLDLYLLSIDEG----ITGYRDDSLET 104

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            ++      +   +  Y E +    + ++               C  C    +   L   
Sbjct: 105 VKQNQAEYGLPLKILSYSELYGWTMDKIVEQVGKK-------NNCTFCGVFRR-QALDRG 156

Query: 133 TRQLGADVLATGHYI 147
             QLG D + TGH  
Sbjct: 157 AAQLGVDHIVTGHNA 171


>gi|68525543|ref|XP_723631.1| GMP synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23477987|gb|EAA15196.1| GMP synthetase [Plasmodium yoelii yoelii]
          Length = 544

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 42/144 (29%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL----LKRDGYDVIGVT----------------- 51
           ++ K+  D  V+ AMSGG+DS+V AA+     K   Y   G+                  
Sbjct: 236 NIKKHAHDHYVIAAMSGGIDSTVAAAMTHKIFKDRFY---GIFIDNGLLRKNEGEKVYTF 292

Query: 52  -------LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPF 104
                  + +     +           D    R++   +        + E F  AV    
Sbjct: 293 IKSTFPDMNITKIDASENFLNQLKGVTDPEQKRKIIGKL--------FIEEFEKAVYSMD 344

Query: 105 AS---SYAAGETPLPCVDCNRTVK 125
                +Y    T  P +  ++  K
Sbjct: 345 IDIEKTYLLQGTLYPDIIESKCSK 368


>gi|326798455|ref|YP_004316274.1| argininosuccinate synthase [Sphingobacterium sp. 21]
 gi|326549219|gb|ADZ77604.1| argininosuccinate synthase [Sphingobacterium sp. 21]
          Length = 395

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S  A  L K  G +V  V   + N+   S+ +      +       
Sbjct: 2   KKKVVLAFSGGLDTSFCAIYLSKDMGLEVHSV---IVNTGGFSEDELKQIETRAYE---- 54

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
               + V SH   D  + + N  I              P  V   R  + + + +  +++
Sbjct: 55  ----LGVASHATVDETQNYYNESIKYLIYGNVLKNATYPLSVSAERVCQATAIANYVKKI 110

Query: 137 GADVLATG 144
            A+ +A G
Sbjct: 111 DANFVAHG 118


>gi|311693416|gb|ADP96289.1| NAD+ synthetase [marine bacterium HP15]
          Length = 538

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 21/97 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  A+     G D V  V +                +   + DA    
Sbjct: 280 VVLGLSGGIDSAVTLAVAVDALGKDRVRAVMM-----------PFRYTSSMSLEDAEAEA 328

Query: 81  DTINVSHYVFDYE---ERFRNAVIVPFASSYAAGETP 114
             + V + VF  E   + F   +  PF      G TP
Sbjct: 329 VALGVQYDVFSIEPMYDAFMETLAGPF-----EGTTP 360


>gi|21673367|ref|NP_661432.1| ExsB protein [Chlorobium tepidum TLS]
 gi|81791733|sp|Q8KF00|QUEC_CHLTE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|21646463|gb|AAM71774.1| exsB protein [Chlorobium tepidum TLS]
          Length = 227

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MR V+ +SGG+DS V  AL  R+G ++  +              G     +++   R++C
Sbjct: 1  MRAVLLVSGGMDSLVATALAHREGLELAAMH----------VNYGQRTWQKELECFRQIC 50

Query: 81 DTINV 85
              +
Sbjct: 51 VHYGI 55


>gi|298373197|ref|ZP_06983187.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str.
          F0058]
 gi|298276101|gb|EFI17652.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str.
          F0058]
          Length = 445

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 8  RLNSLDLDKNP---KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
          +LN+  ++KN     + +++VA+SGG+DS V+  +L R GY         +     S   
Sbjct: 6  KLNNF-INKNNLLSDNRKLLVAVSGGIDSVVLLDMLVRCGYRCAVAHCNFHLRGNESDN- 63

Query: 65 GSCCAGQDVYDARRVCDTINVSHYV 89
                 D    R +    ++  +V
Sbjct: 64 -------DEQFVRALAQKYDIPLFV 81


>gi|258590908|emb|CBE67203.1| Argininosuccinate synthase (Citrulline--aspartate ligase) [NC10
           bacterium 'Dutch sediment']
          Length = 410

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 30/136 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           K  ++V+A SGG+D+SV+   L      +VI                     G+++   R
Sbjct: 3   KVKKIVLAYSGGLDTSVILRWLIETYQAEVIAF-------------CADLGQGEELDPVR 49

Query: 78  RVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPL-PCVDCNRTVKFSD 128
                      Y+ D  E F    + P   +       Y  G +   P +  ++      
Sbjct: 50  EKALKTGASKVYIKDLREEFVRDFVFPCVKANAVYEGRYLLGTSMARPLIAKHQ------ 103

Query: 129 LLSVTRQLGADVLATG 144
            ++V ++ GAD +A G
Sbjct: 104 -MAVAKKEGADAVAHG 118


>gi|187934812|ref|YP_001886173.1| ExsB protein [Clostridium botulinum B str. Eklund 17B]
 gi|187722965|gb|ACD24186.1| ExsB protein [Clostridium botulinum B str. Eklund 17B]
          Length = 233

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 12/74 (16%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K+  +VV  SGG DS+      K+   +VI V+   ++  +  K +  C        AR 
Sbjct: 15 KEKAIVV-FSGGQDSTTCLFWAKKRFREVIAVS---FDYNQKHKLELEC--------ARD 62

Query: 79 VCDTINVSHYVFDY 92
          +C   +V H++ D 
Sbjct: 63 ICKKYDVEHHILDL 76


>gi|294674638|ref|YP_003575254.1| asparagine synthase [Prevotella ruminicola 23]
 gi|294473562|gb|ADE82951.1| asparagine synthase (glutamine-hydrolyzing) [Prevotella ruminicola
           23]
          Length = 554

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 30/150 (20%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA-------GQDVYDAR 77
           V +SGG+DSSV++A+      +     +++ +  K         +         D+  A+
Sbjct: 232 VLLSGGLDSSVISAI-AEKYSE-----MRIEDDSKTKAYWPRLHSFAVGLKGAPDLAKAK 285

Query: 78  RVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVKF 126
            V D I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K 
Sbjct: 286 LVADHIGTVHHEINYTIQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIKM 344

Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDD 156
                V    GAD +  G+    +     D
Sbjct: 345 -----VLSGEGADEIFGGYLYFHKAPTAKD 369


>gi|222529240|ref|YP_002573122.1| argininosuccinate synthase [Caldicellulosiruptor bescii DSM 6725]
 gi|254807502|sp|B9MRP5|ASSY_ANATD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|222456087|gb|ACM60349.1| argininosuccinate synthase [Caldicellulosiruptor bescii DSM 6725]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +   +VI V + +         K           A +V 
Sbjct: 5   KVVLAYSGGLDTSVIIPWLKENFDCEVIAVVVDVGQEDDFDAIKEKAYKTG----ASKV- 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F N  I P           Y  G +        R +    L+++ 
Sbjct: 60  -------YIEDAKEEFVNEYIFPTLKAGAIYEGKYLLGTSMA------RPLIAKKLVNIA 106

Query: 134 RQLGADVLATG 144
           ++  AD +A G
Sbjct: 107 KKENADAIAHG 117


>gi|110833623|ref|YP_692482.1| exsB protein [Alcanivorax borkumensis SK2]
 gi|110646734|emb|CAL16210.1| exsB protein, putative [Alcanivorax borkumensis SK2]
          Length = 227

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGY 45
          K P   + VV +SGG+DS+   A+ +  GY
Sbjct: 2  KEPAMKKAVVLLSGGLDSATCLAIARDQGY 31


>gi|120556554|ref|YP_960905.1| thiamine biosynthesis protein ThiI [Marinobacter aquaeolei VT8]
 gi|189030638|sp|A1U6U9|THII_MARAV RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|120326403|gb|ABM20718.1| [ThiS-adenylate] sulfurtransferase [Marinobacter aquaeolei VT8]
          Length = 484

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 43/191 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC-- 80
           V+  +SGG DSSV A L+ R G     +   L     A+   G           R+V   
Sbjct: 181 VMTLISGGYDSSVAAYLMMRRGIRSHYLFFNL---GGAAHEVG----------VRQVAHY 227

Query: 81  --DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +    SH V      F   V     S                 +K   +L    ++  
Sbjct: 228 LWERYGSSHNVKFISVPFEGVVAEIMRSVNHR--------HWGVVLK-RMMLKAAAEIAR 278

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF-LFATTQQQLCDLRFPLGDMKK 197
           D  A+G      L +GD           +     Q+   L    +     +  PL  M K
Sbjct: 279 DYNASG------LVMGD----------AVAQVSSQTLTNLNVVDRASDEVVLRPLIAMDK 322

Query: 198 ESVRDLAREMG 208
           + +  +A+++G
Sbjct: 323 QEIIRIAKDIG 333


>gi|120553808|ref|YP_958159.1| NAD+ synthetase [Marinobacter aquaeolei VT8]
 gi|120323657|gb|ABM17972.1| DNA-directed RNA polymerase, subunit H [Marinobacter aquaeolei VT8]
          Length = 554

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS+V  A+     G + V  V +                +   + DA    
Sbjct: 298 VVLGLSGGIDSAVTLAVAVDALGKERVRAVMM-----------PFRYTSSISLEDAEAEA 346

Query: 81  DTINVSHYVFDYEERF 96
             + V + VF  E  +
Sbjct: 347 TALGVQYDVFSIEPMY 362


>gi|329895227|ref|ZP_08270891.1| Glutamine amidotransferase chain of NAD synthetase [gamma
           proteobacterium IMCC3088]
 gi|328922465|gb|EGG29807.1| Glutamine amidotransferase chain of NAD synthetase [gamma
           proteobacterium IMCC3088]
          Length = 546

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 23/98 (23%)

Query: 23  VVVAMSGGVDSSVV-----AALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           VV+ +SGGVDS++      AAL    G D V  V +                +   + DA
Sbjct: 290 VVLGLSGGVDSALTLAVAEAAL----GADRVQAVMM-----------PFKYTSQMSLEDA 334

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114
               + + V++ V   E  +     +        G  P
Sbjct: 335 AEQANRMGVNYSVIPIEPIYNA--FMSALEEEFEGRKP 370


>gi|319405818|emb|CBI79448.1| NH3-dependent NAD synthetase [Bartonella sp. AR 15-3]
          Length = 558

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRV 79
           V++  SGG+DS++ AA+     G + V  V +              C    + + DA+  
Sbjct: 293 VLLGFSGGIDSALCAAIAVDALGAERVRAVMM------------PYCYTSQESLKDAKHC 340

Query: 80  CDTINVSHYVF 90
              +   + V 
Sbjct: 341 AHLLGCRYEVI 351


>gi|313904543|ref|ZP_07837919.1| PP-loop domain protein [Eubacterium cellulosolvens 6]
 gi|313470685|gb|EFR66011.1| PP-loop domain protein [Eubacterium cellulosolvens 6]
          Length = 396

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 32/141 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGS 66
           D +      ++ V +SGG DS ++A L K         ++V+ + +              
Sbjct: 133 DYELVKPGDKIAVCISGGKDSMLMAMLFKELKRRNKIPFEVVYLCM------------NP 180

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVK 125
             +   +         +++          F   +        A    P  PC  C   ++
Sbjct: 181 GYSETTLGMIEGNAKLLDLPL------TMFETRIFD------AVDNIPKSPCYIC-ARMR 227

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L    + LG + +A GH+
Sbjct: 228 RGYLYRKAQDLGCNKIALGHH 248


>gi|253682007|ref|ZP_04862804.1| argininosuccinate synthase [Clostridium botulinum D str. 1873]
 gi|253561719|gb|EES91171.1| argininosuccinate synthase [Clostridium botulinum D str. 1873]
          Length = 402

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+S+    LK + Y  +VI   + +       + K           A ++
Sbjct: 4   KVVLAYSGGLDTSITIHWLKEN-YNLEVIACCVNVGQDEDFDEIKKKAIKSG----AAKI 58

Query: 80  CDTINVSHYVFDYEERFRNA-----VIVPFASS--YAAGETPLPCVDCNRTVKFSDLLSV 132
                   YV D    F +      V         Y  G +        R +    L+ +
Sbjct: 59  --------YVEDVTSEFVSEYIYKGVKANAMYEGKYLLGTSFA------RPLIAKKLVEI 104

Query: 133 TRQLGADVLATG 144
             + GA  +  G
Sbjct: 105 AHKEGAKYICHG 116


>gi|254172767|ref|ZP_04879441.1| conserved hypothetical protein TIGR00289 [Thermococcus sp. AM4]
 gi|214032923|gb|EEB73751.1| conserved hypothetical protein TIGR00289 [Thermococcus sp. AM4]
          Length = 224

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MRV V  SGG DS+       R G++V     +   S  + +         +++      
Sbjct: 1  MRVAVLYSGGKDSNYALYWALRQGFEV-----KYLVSMVSEREDSYMYHVPNIHLTELQA 55

Query: 81 DTINVSH 87
            I +  
Sbjct: 56 RAIGIPL 62


>gi|254428689|ref|ZP_05042396.1| exsB protein [Alcanivorax sp. DG881]
 gi|196194858|gb|EDX89817.1| exsB protein [Alcanivorax sp. DG881]
          Length = 222

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI 48
           + VV +SGG+DS+   A+ +  GY+  
Sbjct: 2  KKAVVLLSGGLDSATCLAIARDQGYECH 29


>gi|189425988|ref|YP_001953165.1| ExsB family protein [Geobacter lovleyi SZ]
 gi|189422247|gb|ACD96645.1| ExsB family protein [Geobacter lovleyi SZ]
          Length = 261

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 61/194 (31%), Gaps = 47/194 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            VA SGGVDS+    LL +  +D +G      +   A          Q+  DA R    I
Sbjct: 18  AVAFSGGVDST----LLLKVAHDTLG------DRCCAITIDAPYHFRQEQDDATRFARQI 67

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V H +  +                      +P +  N   +   L          V   
Sbjct: 68  GVRHLIIPFAPA------------------SVPDLLNNPPER-CYLCKQALLKDCFVALP 108

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVR 201
            H+  +     DD K  R   R           L          +R PL +    K+ VR
Sbjct: 109 PHWNLADGSTCDDQKAHRPGSRA----------LAELG------VRSPLTEAGFSKQDVR 152

Query: 202 DLAREMGLDIADKS 215
            L+R++ L   D+ 
Sbjct: 153 LLSRQLELPDWDRP 166


>gi|15602400|ref|NP_245472.1| thiamine biosynthesis protein ThiI [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|13431925|sp|P57849|THII_PASMU RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|12720799|gb|AAK02619.1| ThiI [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 480

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 51/191 (26%), Gaps = 43/191 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDARR 78
           V+  +SGG DS V + +L R G  V      L    +                  +  R 
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWQRYSASHKVRF 239

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           V           ++       V+         G+  +      + +       +  + G 
Sbjct: 240 VA---------INF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASRIAERFGI 281

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKK 197
             + TG                      +     Q+        +     +  PL    K
Sbjct: 282 QAIVTGE--------------------ALGQVSSQTLTNLRLIDEASESLVLRPLITHDK 321

Query: 198 ESVRDLAREMG 208
           E +  +A+E+G
Sbjct: 322 EQIIAMAKEIG 332


>gi|332037899|gb|EGI74348.1| argininosuccinate synthase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 400

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S +   LK + G +V+                G      +  +A+ +
Sbjct: 5   KKVVLAYSGGLDTSAIVPWLKENYGCEVVAF----------VADVGQGAEELEGVEAKAI 54

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   YV D ++   +  I P          +Y  G +    +     V       +
Sbjct: 55  ASGAS-ECYVVDLKDEMVSDYIYPTLKTGSIYEGTYLLGTSMARPIIAKAQV------EI 107

Query: 133 TRQLGADVLATG 144
            R++GAD L+ G
Sbjct: 108 ARKVGADALSHG 119


>gi|325282320|ref|YP_004254861.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           proteolyticus MRP]
 gi|324314129|gb|ADY25244.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           proteolyticus MRP]
          Length = 292

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 35/215 (16%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDS----SVVAALLKRDG--YDVIGVTLQLYN 56
           +++AT     D     +  R++V +SGG DS     V+  L KR    ++V+ V L    
Sbjct: 17  ITKATGQAIGDYRMIEEGDRIMVCLSGGKDSYTLLDVLLHLQKRAPVRFEVVAVNL---- 72

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
                  +G     +DV    R    + V H +   E+ +   V+         G+T   
Sbjct: 73  ------DQGQPGFPKDVLP--RYLSELGVPHDIL-TEDTYS--VVKEKIPE---GKT--T 116

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176
           C  C+R ++   L +  R+LGA  +A GH+    L             + M   + QS  
Sbjct: 117 CSLCSR-LRRGILYAHARRLGATKIALGHHRDDILETLFMNMFFGARLKAM-PPKLQSDD 174

Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211
                      +  PL  + +  +   A   G  I
Sbjct: 175 GTNV-------VIRPLAYVPESQIIAYAGARGFPI 202


>gi|312622513|ref|YP_004024126.1| argininosuccinate synthase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202980|gb|ADQ46307.1| argininosuccinate synthase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +   +VI V + +         K           A +V 
Sbjct: 5   KVVLAYSGGLDTSVIIPWLKENFDCEVIAVVVDVGQEDDFDAIKEKAYKTG----ASKV- 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F N  I P           Y  G +        R +    L+++ 
Sbjct: 60  -------YIEDAKEEFVNEYIFPTLKAGAIYEGKYLLGTSMA------RPLIAKKLVNIA 106

Query: 134 RQLGADVLATG 144
           ++  AD +A G
Sbjct: 107 KKENADAIAHG 117


>gi|303247112|ref|ZP_07333387.1| argininosuccinate synthase [Desulfovibrio fructosovorans JJ]
 gi|302491538|gb|EFL51423.1| argininosuccinate synthase [Desulfovibrio fructosovorans JJ]
          Length = 397

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   +K+  YD  VI VT  L    +    +              
Sbjct: 5   KKVVLAYSGGLDTSVILKWIKKT-YDCEVITVTCDLGQEEELDGLEEKALRTGASKA--- 60

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
                    Y+ D  E F    I P   +       Y  G +    +   R      L+ 
Sbjct: 61  ---------YIDDLREEFAKDFIFPMLRAGAVYEGRYLLGTSIARPLIAKR------LVD 105

Query: 132 VTRQLGADVLATG 144
           V R  GA  +A G
Sbjct: 106 VARAEGAQAVAHG 118


>gi|171463824|ref|YP_001797937.1| NAD+ synthetase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193362|gb|ACB44323.1| NAD+ synthetase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 539

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 13/63 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDS++V A+     G D V  V +  + +   S             DAR + 
Sbjct: 285 VIIGLSGGVDSALVLAIAVDALGADKVRAVMMASHYTADIS-----------WIDAREMA 333

Query: 81  DTI 83
           + +
Sbjct: 334 ENL 336


>gi|168016344|ref|XP_001760709.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688069|gb|EDQ74448.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 603

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 25  VAMSGGVDS----SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V +SGG+DS    SV A  L         V  +++ +   S   G   +  D+  AR V 
Sbjct: 235 VLLSGGLDSSLVASVAARHLAET----KAV--RIWGNELHSFCVGLEGSP-DLKAAREVA 287

Query: 81  DTINVSHYVFDY 92
             I   H+ F++
Sbjct: 288 KYIGTRHHEFNF 299


>gi|325478351|gb|EGC81466.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 510

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 32/192 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVC 80
           +++  +SGGVDSSV A ++ +     IG  L+ ++      ++  +    +   D     
Sbjct: 217 KMICGLSGGVDSSVAATIVSKA----IGDNLKCIFVDHGLLRKDEAKSVMETYKD----- 267

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139
             + ++  + D  E F   +                 +  N  V         +++ GA 
Sbjct: 268 --LGLNVKMVDKSEEFLGLLKGVDDPEEKRK------IIGNHFV--EVFEEEAKKIGGAK 317

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ-LCDLRFPLGDMKKE 198
            L  G        V + GK +  + +           +    +      L  PL ++ K+
Sbjct: 318 YLVQG---TIYPDVIESGKDKASVIKSHHN-------VGGLPEDMDFVGLIEPLRELFKD 367

Query: 199 SVRDLAREMGLD 210
            VR +   +G+ 
Sbjct: 368 EVRAVGEAIGVP 379


>gi|118382664|ref|XP_001024488.1| nucleosome assembly protein 1, putative [Tetrahymena thermophila]
 gi|89306255|gb|EAS04243.1| nucleosome assembly protein 1, putative [Tetrahymena thermophila
           SB210]
          Length = 320

 Score = 42.1 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 48  IGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASS 107
            G+ LQL+ +    +          + DA  +C  +  S+ +      F++ +I      
Sbjct: 212 TGIFLQLFQNVNLEE------GLNKISDAHDLCTKLGRSYEI---ALIFKDELIPYSLEY 262

Query: 108 YAAGETPL 115
           Y    TP 
Sbjct: 263 YLNARTPN 270


>gi|269468715|gb|EEZ80340.1| PP-loop superfamily ATPase [uncultured SUP05 cluster bacterium]
          Length = 228

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 13/70 (18%)

Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
          ++NP+  + +V +SGG+DS+   A+ K  G++   +          S   G      ++ 
Sbjct: 3  NQNPE--KAIVLLSGGLDSTTALAIAKSQGFECYAL----------SFDYGQ-KQKSELN 49

Query: 75 DARRVCDTIN 84
           A+++    +
Sbjct: 50 SAKKIAKQFD 59


>gi|253568638|ref|ZP_04846049.1| asparagine synthetase B [Bacteroides sp. 1_1_6]
 gi|251842711|gb|EES70791.1| asparagine synthetase B [Bacteroides sp. 1_1_6]
          Length = 559

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 42/212 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPKDFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRD 202
              ++ L             P  +++K  VR+
Sbjct: 404 FLDKEFLDVAMALNPKAKMCPGKEIEKRIVRE 435


>gi|224538910|ref|ZP_03679449.1| hypothetical protein BACCELL_03806 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519488|gb|EEF88593.1| hypothetical protein BACCELL_03806 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 251

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 33/133 (24%)

Query: 22  RVVVAMSGGVDS-SVVAALLKRD-----GYDVIGVT--LQLYNSRKASKRKGSCCAGQDV 73
           ++++ +SGG DS ++V  L KR       + V+ V   ++                  D+
Sbjct: 33  KILIGLSGGKDSLALVELLAKRARVFKPRFSVVAVHVVMKNI------------PYQSDL 80

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
              R   ++ NV          +       F +S    ++P      NR      L +V 
Sbjct: 81  AYLREYVESWNVPFV------LYETE----FDASTDTRKSPCFLCSWNRR---KALFTVA 127

Query: 134 RQLGADVLATGHY 146
           ++ G + +A GH+
Sbjct: 128 KEQGCNKIALGHH 140


>gi|224369845|ref|YP_002604009.1| argininosuccinate synthase [Desulfobacterium autotrophicum HRM2]
 gi|223692562|gb|ACN15845.1| ArgG [Desulfobacterium autotrophicum HRM2]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   L    + +V+ +T  L    +            D  +A+ +
Sbjct: 5   KKVVLAYSGGLDTSVILKWLIETYHCEVVTLTADLGQEEE-----------LDGLEAKAL 53

Query: 80  CDTINVSHYVFDYEERF-RNAVIVPFAS------SYAAGETPLPCVDCNRTVKFSDLLSV 132
             T  V  YV D  E F R+ V   F +       Y  G +    +   R +       +
Sbjct: 54  -KTGAVKAYVEDLREEFIRDYVFPAFRANAIYEGQYLLGTSIARPLIAKRQI------EI 106

Query: 133 TRQLGADVLATG 144
               GAD ++ G
Sbjct: 107 AAAEGADAVSHG 118


>gi|220903378|ref|YP_002478690.1| hypothetical protein Ddes_0092 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867677|gb|ACL48012.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 24  VVAMSGGVDS--SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
            VA SGG+DS     AALL   G DV+ V  +           G     ++   A+    
Sbjct: 38  AVAFSGGIDSRFLCHAALLC--GCDVLAVHAR-----------GPHVPAEESDSAQVWAR 84

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
              +   V D++      V V              C  C +      LL       A  L
Sbjct: 85  ARGLPLLVVDFDPLSLPEVAVNSRQR---------CYACKQ-----GLLKAI----AGAL 126

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
           A    +      G D    R++C   + + D + F       +   +  PL +
Sbjct: 127 AHTGKMAGNAPAGKDPHGTRLLCDGSNAD-DLTAFRPGLRALKEAGIISPLAE 178


>gi|291287571|ref|YP_003504387.1| PP-loop domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884731|gb|ADD68431.1| PP-loop domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 298

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +++V +SGG DS V+  LL + GY+  G+ +      + S++         +       +
Sbjct: 49  KIMVCISGGKDSLVLWYLLHKMGYETTGMYI-NLGIGEYSEKS--------LRKVEAFTE 99

Query: 82  TINVSHYVFDYEE------RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
              +   + +  E          +V     S          C    R         V  +
Sbjct: 100 KFGLKAVIVNLTELGHPIPLLEKSVKRHACS---------ICGIAKRY----YFNKVAYE 146

Query: 136 LGADVLATGHYI 147
              DV+ATGH +
Sbjct: 147 NNFDVVATGHNL 158


>gi|124027476|ref|YP_001012796.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978170|gb|ABM80451.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus
           DSM 5456]
          Length = 331

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 47/147 (31%)

Query: 22  RVVVAMSGGVDS-SV---------------VAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           ++VVA+SGG DS S+               VAALL  +G                     
Sbjct: 37  KIVVAVSGGKDSMSLLHYLLRLSKRVPGWRVAALLVDEG--------------------I 76

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY-----AAGETPLPCVDC 120
                  +    R  +   V + +  + + F                   G   LPC  C
Sbjct: 77  RGYREYTIERFLRFVEEHGVEYRIARFRDEF-----GYTLDEIVKIGKERGLPYLPCTYC 131

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYI 147
               ++  +    R++GA V+AT H +
Sbjct: 132 GVFRRY-LMNKTAREMGATVVATAHNL 157


>gi|104783852|ref|YP_610350.1| NAD synthetase [Pseudomonas entomophila L48]
 gi|122401643|sp|Q1I469|NADE_PSEE4 RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|95112839|emb|CAK17567.1| NAD synthetase, prefers NH3 over glutamine [Pseudomonas entomophila
           L48]
          Length = 275

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 57/198 (28%), Gaps = 47/198 (23%)

Query: 24  VVAMSGGVDSSVVAALLKR-----------DGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           V+ +SGGVDS   A L +R            GY  I V  +L    +  +     C    
Sbjct: 48  VLGISGGVDSLTAALLAQRAINELRSETGDAGYRFIAV--RLPYQVQHDEHDAQACLEVI 105

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D            +  D     R        +    G +P         +K     + 
Sbjct: 106 KAD----------EVHTVDIAPAVRALAAE---TEALKGGSPSLVDFVVGNIK-----AR 147

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
           TR +    +A     R+ L +G D     +M            F              PL
Sbjct: 148 TRMVAQYTIAG---ARAGLVIGTDHAAEAVM-----------GFFTKFGDG--ACDLAPL 191

Query: 193 GDMKKESVRDLAREMGLD 210
             + K  VR +AR  G  
Sbjct: 192 SGLVKNQVRAIARSFGAP 209


>gi|119386890|ref|YP_917945.1| exsB protein [Paracoccus denitrificans PD1222]
 gi|167016441|sp|A1B9Q5|QUEC_PARDP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|119377485|gb|ABL72249.1| exsB protein [Paracoccus denitrificans PD1222]
          Length = 233

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 67/203 (33%), Gaps = 30/203 (14%)

Query: 21  MRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M+ +V  SGG+DS V  A ++   G    G+T +L +     +        +++  A   
Sbjct: 1   MKTIVVCSGGLDS-VSLAHMVAAQG----GLT-RLISFDYGQR------HRKELDYAALA 48

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFA--------SSYAAGETPLPCVDCNRTVKFSDLLS 131
              + V H+V D       AV+   A          + A ET    V  NR    + +L+
Sbjct: 49  ARRLGVPHHVIDMRGV--GAVLTGSALTGGAEVPDGHYAEETMRITVVPNRN---AIMLT 103

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
           V   + A   A G    +    G D       CRP   +  Q     A        L  P
Sbjct: 104 VAFGMAA---AMGDQAVATAVHGGDHFIYPD-CRPAFTQAFQQMQDAALDGYAQARLLTP 159

Query: 192 LGDMKKESVRDLAREMGLDIADK 214
                K  +           A+ 
Sbjct: 160 FVHRTKADIVTEGARHDTPFAET 182


>gi|325114756|emb|CBZ50312.1| hypothetical protein NCLIV_007860 [Neospora caninum Liverpool]
          Length = 570

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQ---LYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + +SGGVDSS++AA+  ++ +  +  T +   ++ + +            D+  A++V D
Sbjct: 245 LMLSGGVDSSIIAAIAAKE-FQKMSATEKGSHIW-TNQIHAFSIGLKGAPDMKFAKKVAD 302

Query: 82  TINVSHYVFDYEERF----RNAVIVPFASSY 108
            +   H+ F +E        + VI     +Y
Sbjct: 303 VLGTVHHQFTFEVEEGLDALDDVI-YMIETY 332


>gi|212224396|ref|YP_002307632.1| ATP-binding protein [Thermococcus onnurineus NA1]
 gi|212009353|gb|ACJ16735.1| ATP-binding protein [Thermococcus onnurineus NA1]
          Length = 225

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MRV V  SGG DS+       + G++V     +   S  +   +       +++      
Sbjct: 1  MRVAVLYSGGKDSNYALYWALKQGFEV-----KYLVSMVSESDESYMYHVPNIHLTELQA 55

Query: 81 DTINVSHY 88
            I +   
Sbjct: 56 KAIGIPLI 63


>gi|134096346|ref|YP_001101421.1| C32 tRNA thiolase [Herminiimonas arsenicoxydans]
 gi|205830596|sp|A4G9W3|TTCA_HERAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|133740249|emb|CAL63300.1| putative ATPase [Herminiimonas arsenicoxydans]
          Length = 318

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 31/142 (21%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL-----LKRD---GYDVIGVTLQLYNSRKASKRK 64
           D +      +++V +SGG DS   A L     L+      +D++ V L           +
Sbjct: 50  DFNMIEDGDKIMVCLSGGKDS--YALLDILMTLRERAPIKFDIVAVNL----------DQ 97

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                 + +  A      +++  ++ + ++ +   ++         G+T   C  C+R +
Sbjct: 98  KQPNFPEHILPAYL--KQLDIPFHIEN-QDTYS--IVKRLIPE---GKT--TCSLCSR-L 146

Query: 125 KFSDLLSVTRQLGADVLATGHY 146
           +   L  V  +LGA  +A GH+
Sbjct: 147 RRGILYRVADELGATKIALGHH 168


>gi|300726011|ref|ZP_07059470.1| asparagine synthase (glutamine-hydrolyzing) [Prevotella bryantii
           B14]
 gi|299776725|gb|EFI73276.1| asparagine synthase (glutamine-hydrolyzing) [Prevotella bryantii
           B14]
          Length = 565

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 25  VAMSGGVDSSV-VAALLKRDGYDVI--GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V +SGG+DSSV  A   K   + V   G T + +   +            D+  A+ V D
Sbjct: 242 VLLSGGLDSSVISAIAEKYSQHRVEEDGKT-RAW-WPRLHSFAVGLKGAPDLAKAKLVAD 299

Query: 82  TINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVKFSDLL 130
            I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K     
Sbjct: 300 HIGTVHHEINYTIQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIKMVLSG 358

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA-------TTQQ 183
               ++    L       ++ +  +  ++   +     L  ++S   +          ++
Sbjct: 359 EGADEIFGGYLYFHKAPNAQAFHEETVRKLSKLYMYDCLRANKSLCAWGVEGRVPFLDKE 418

Query: 184 QL--------CDLRFPLGDMKKESVRD 202
            L             P   M+K+ VR+
Sbjct: 419 FLDVAMRTNPEAKMCPGQTMEKKIVRE 445


>gi|297243357|ref|ZP_06927290.1| NAD synthase [Gardnerella vaginalis AMD]
 gi|296888604|gb|EFH27343.1| NAD synthase [Gardnerella vaginalis AMD]
          Length = 565

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V + +SGG+DS++VA +      G +V G+++    S   SK            DAR + 
Sbjct: 291 VCLGLSGGIDSALVATMAADACGGANVYGISMPSMYSSDGSK-----------DDARDLA 339

Query: 81  DTINVSHYVFDYEERFR 97
           + I   + V   E  F+
Sbjct: 340 ERIGAHYDVQPIEPLFK 356


>gi|304315760|ref|YP_003850905.1| argininosuccinate synthase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777262|gb|ADL67821.1| argininosuccinate synthase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 412

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 29/159 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K  +VV+A SGG+D+SV+   LK + Y+         +   A    G       + +   
Sbjct: 3   KGEKVVLAYSGGLDTSVIIPWLKEN-YEC--------DIIAACIDVGQGSELNSIKEKAL 53

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
           +     +  YV D ++ F    I P           Y  G +        R +    L+ 
Sbjct: 54  LSGASKI--YVEDVKDEFVENYIFPTLKAGAVYEGKYLLGTSFA------RPLIAKKLVE 105

Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
           +  + GA  +A G         G+D  R  +  R +D  
Sbjct: 106 IAHKEGAKAIAHG-----ATGKGNDQVRFEVSIRALDPS 139


>gi|293332519|ref|NP_001169688.1| hypothetical protein LOC100383569 [Zea mays]
 gi|224030901|gb|ACN34526.1| unknown [Zea mays]
          Length = 545

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 43/198 (21%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+ +  G  +  V +     R     +       D      
Sbjct: 238 DEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEGERVMTTFESD------ 291

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTR 134
               +++     D  E+F         S     E P       R +   + +        
Sbjct: 292 ----LHLPVTCVDASEQF--------LSKLKGVEDPE----KKRKIIGREFIAVFDDFAH 335

Query: 135 QLGADVLATGHYIRSRLYVGD---------DGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
           +L   +     Y+       D          G+      +           +    +   
Sbjct: 336 KLEQKIGKRPEYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-------VGGLPKDMK 388

Query: 186 CDLRFPLGDMKKESVRDL 203
             L  PL  + K+ VR L
Sbjct: 389 LKLIEPLKLLFKDEVRKL 406


>gi|123439490|ref|XP_001310516.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892289|gb|EAX97586.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 280

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 27/132 (20%)

Query: 22  RVVVAMSGGVDSSVVAALL------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R+++ +SGG DS  +   L      K   + V+   ++  N             G D   
Sbjct: 30  RILIGLSGGKDSLTLTHYLSEWMREKNFSFQVVAAHIKFSN----------LPYGIDAKY 79

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C +  V +++ +                Y   E    C+ C+R  + + L+ + R+
Sbjct: 80  LEDFCSSRKVEYHLVE----------DQIRDVYLENEHKETCIHCSRFRR-AKLMELARK 128

Query: 136 LGADVLATGHYI 147
              + L  GH++
Sbjct: 129 FNCNKLTLGHHL 140


>gi|325848903|ref|ZP_08170413.1| argininosuccinate synthase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480547|gb|EGC83609.1| argininosuccinate synthase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 413

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +  +VV+A SGG+D+SV+   LK +G  +VI V          S   G       +   
Sbjct: 10  NQAKKVVLAYSGGLDTSVMVTWLKENGAKEVICV----------SVDLGQVKNPDALE-- 57

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV----KFSDLLSV 132
           ++   +     Y  + E+ F +        +  AG            +        L+ V
Sbjct: 58  KKALKSGASKFYNVNVEDEFID---DYAFKTLKAGAKYENVYLLGTAIARPLIAKVLVDV 114

Query: 133 TRQLGADVLATG 144
             +  AD++  G
Sbjct: 115 AEKEKADLIVHG 126


>gi|323701739|ref|ZP_08113410.1| exsB protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533275|gb|EGB23143.1| exsB protein [Desulfotomaculum nigrificans DSM 574]
          Length = 228

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVV-AALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          M+ +V +SGG+DS+V  A  L         V L L      +   G   A +++  A  +
Sbjct: 1  MKSIVLLSGGLDSAVCLAYGLTE-----TKVELAL------TFNYGQRSATREIQAAAAL 49

Query: 80 CDTINVSHYVFDY 92
           +   V H V D 
Sbjct: 50 ANYYGVKHRVIDL 62


>gi|313247181|emb|CBY35999.1| unnamed protein product [Oikopleura dioica]
          Length = 193

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 279 FVVYLDKNSSRVIVG--PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
           F+     N   +        +L  +   L +++   +GL E +  D    FV++      
Sbjct: 12  FLADKSPNGDVLTCSGTNHPALFTNNFTLMDLSHPVEGLLEISEDDVLSVFVRLYHRSPV 71

Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY-------------TSDSNEARVLGGGII 383
           +P  +++ D  ++   +K    +  G     Y                S E  ++GG  I
Sbjct: 72  IPAAIRKIDGHIFCWMDKPIQNLTRGHPVAIYIRKEQFGIDWEQSDDQSMEMLLIGGACI 131

Query: 384 SGS 386
             +
Sbjct: 132 HSA 134


>gi|299541809|ref|ZP_07052132.1| queuosine biosynthesis protein [Lysinibacillus fusiformis ZC1]
 gi|298725547|gb|EFI66188.1| queuosine biosynthesis protein [Lysinibacillus fusiformis ZC1]
          Length = 219

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          K  + +V  SGG DS+      K    ++  VT   ++  +  + +  C        A+ 
Sbjct: 2  KKEKAIVVFSGGQDSTTCLFWAKERFEEIEAVT---FDYGQRHRLEIDC--------AKV 50

Query: 79 VCDTINVSHYVFDYE 93
          + + + + H++ D  
Sbjct: 51 ITEELGIKHHILDMS 65


>gi|257452359|ref|ZP_05617658.1| queuosine biosynthesis protein QueC [Fusobacterium sp. 3_1_5R]
 gi|257465849|ref|ZP_05630160.1| queuosine biosynthesis protein QueC [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315917006|ref|ZP_07913246.1| archaeosine biosynthesis protein queC [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|317058902|ref|ZP_07923387.1| archaeosine biosynthesis protein queC [Fusobacterium sp. 3_1_5R]
 gi|313684578|gb|EFS21413.1| archaeosine biosynthesis protein queC [Fusobacterium sp. 3_1_5R]
 gi|313690881|gb|EFS27716.1| archaeosine biosynthesis protein queC [Fusobacterium
          gonidiaformans ATCC 25563]
          Length = 231

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          M+V+V +SGG+DS+   A+     G D V+ +          S   G     +++  AR 
Sbjct: 1  MKVLVLLSGGLDSTTCLAIAVDKYGADQVVAL----------SASYGQ-KHTKEILSARA 49

Query: 79 VCDTINVSHYVFDYEERFR 97
          +     V     +  + F 
Sbjct: 50 IAKYYQVELLELNLSKIFS 68


>gi|253575902|ref|ZP_04853236.1| argininosuccinate synthase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844696|gb|EES72710.1| argininosuccinate synthase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 412

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++V+A SGG+D+SV+   LK   YD  +I  T                    D  +A+ +
Sbjct: 5   KIVLAYSGGLDTSVILKWLKET-YDAEIIAFT-----------ADIGQKEELDGLEAKAL 52

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               +   Y+ D  + F    I P           Y  G +    +   R V       +
Sbjct: 53  ATGAS-KVYIDDLRDEFAKDFIYPMFQAGALYEGQYLLGTSIARPLIAKRMV------EI 105

Query: 133 TRQLGADVLATG 144
            R  GA  +A G
Sbjct: 106 ARAEGATAIAHG 117


>gi|120611780|ref|YP_971458.1| NAD+ synthetase [Acidovorax citrulli AAC00-1]
 gi|120590244|gb|ABM33684.1| NAD+ synthetase [Acidovorax citrulli AAC00-1]
          Length = 550

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++V A+     G D V  V +                A     DAR + 
Sbjct: 290 VLLGLSGGIDSALVLAIAVDALGPDKVRAVMM-----------PSPYTADISWIDARDMA 338

Query: 81  DTINVSHYVFDYEERFR 97
           + + V +       +F 
Sbjct: 339 ERLGVRYDEIAIAPQFE 355


>gi|295099739|emb|CBK88828.1| thiazole biosynthesis/tRNA modification protein ThiI [Eubacterium
           cylindroides T2-87]
          Length = 399

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + +V +SGG+DS V + L+ + G  +  +         +          + +  A+++
Sbjct: 176 GGKAMVLLSGGIDSPVASYLMMKRGTHIECIH------YASPPYTSQNAQDKVMELAQQI 229

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           C    ++  +V  +    + A+      SYA        +   R +       +  +  A
Sbjct: 230 CGYQGDLLVHVVPFTNL-QLAIYQHADESYA--------ITLMRRMMMRIATGLAEKRHA 280

Query: 139 DVLATGHYI 147
             +ATG  I
Sbjct: 281 QAIATGESI 289


>gi|283783349|ref|YP_003374103.1| NAD+ synthetase [Gardnerella vaginalis 409-05]
 gi|298252710|ref|ZP_06976504.1| NAD synthase [Gardnerella vaginalis 5-1]
 gi|283441963|gb|ADB14429.1| NAD+ synthetase [Gardnerella vaginalis 409-05]
 gi|297533074|gb|EFH71958.1| NAD synthase [Gardnerella vaginalis 5-1]
          Length = 570

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V + +SGG+DS++VA +      G +V G+++    S   SK            DAR + 
Sbjct: 291 VCLGLSGGIDSALVATMAADACGGANVYGISMPSMYSSDGSK-----------DDARDLA 339

Query: 81  DTINVSHYVFDYEERFR 97
           + I   + V   E  F+
Sbjct: 340 ERIGAHYDVQPIEPLFK 356


>gi|144899782|emb|CAM76646.1| Asparagine synthase, glutamine-hydrolyzing [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 625

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 24/74 (32%)

Query: 27  MSGGVDSSVVAALLKRDGYD-------VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +SGG+DSS VAA+    G D        +G   Q Y+                   A+ V
Sbjct: 267 LSGGMDSSAVAAIA--AGLDKASTKAFCVGFHEQSYDE---------------SVHAQAV 309

Query: 80  CDTINVSHYVFDYE 93
            D + +   + +  
Sbjct: 310 ADHLGIPLTILENR 323


>gi|82750414|ref|YP_416155.1| aluminum resistance protein [Staphylococcus aureus RF122]
 gi|110816265|sp|Q2YSL9|QUEC_STAAB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|82655945|emb|CAI80349.1| probable aluminum resistance protein [Staphylococcus aureus RF122]
          Length = 222

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 31/213 (14%)

Query: 14  LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           ++    + + +V  SGG DS+      K+   +V  VT   Y  R  ++          +
Sbjct: 1   MESVLNNEKAIVVFSGGQDSTTCLFYAKKHFKEVELVTF-NYGQRHDTE----------I 49

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--- 130
             A+++     + H+V D      + +     + +    T       N  V   +LL   
Sbjct: 50  EVAKQIAQDQGMKHHVLDMSLL--SQLTPNALTQHDMEITNNEDGIPNTFVPARNLLFLS 107

Query: 131 ---SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              ++  Q+GA  + TG           D       CR   ++        A  +  +  
Sbjct: 108 FAGALAYQIGAKHIITG-------VCETDFSGYPD-CRDSFIKSMNVTLSLAMDKDCVIH 159

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDI 220
              PL  + K     L+ E  L++ D   ++ +
Sbjct: 160 T--PLMWLNKAETWKLSDE--LEVLDYIRTKTL 188


>gi|39938629|ref|NP_950395.1| thiamine biosynthesis protein ThiI [Onion yellows phytoplasma OY-M]
 gi|39721738|dbj|BAD04228.1| thiamine biosynthesis protein [Onion yellows phytoplasma OY-M]
          Length = 434

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 41/189 (21%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV----C 80
           V MSGG+DS V A L  + G  V  +          S       + Q V D  +V     
Sbjct: 191 VLMSGGIDSPVAAYLAMKKGITVELLHF-------ESSPLTPLESIQKVIDLAKVLSRYA 243

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +  ++  +    +  +      SY         ++  R + +        Q     
Sbjct: 244 FGNQIKLHLVPFR-YLQETITKTVLDSYI--------INVMRRMMYRLASQFAFQKNHLC 294

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           L  G  +                         Q+     TT Q        PL  M K  
Sbjct: 295 LINGESVGQVAS--------------------QTLESMQTTTQVTSMTILRPLVTMDKNE 334

Query: 200 VRDLAREMG 208
           +  +A+++ 
Sbjct: 335 IIKIAKQID 343


>gi|307129908|ref|YP_003881924.1| sulfur transfer protein [Dickeya dadantii 3937]
 gi|306527437|gb|ADM97367.1| sulfur transfer protein [Dickeya dadantii 3937]
          Length = 482

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 39/189 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G           R+V   
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNL---GGAAHEIG----------VRQVAHY 226

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +       +   +       V+         G+  +      + +       +  + G  
Sbjct: 227 LWNRFGSSHRVRFVAIDFEPVVGEILEKVDDGQMGVVL----KRMMVRAASRIAERYGVQ 282

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L TG  +      G    +     R +D   D               +  PL    KE 
Sbjct: 283 ALVTGEAL------GQVSSQTLTNLRLIDNASD-------------TLILRPLISHDKEH 323

Query: 200 VRDLAREMG 208
           +  +ARE+G
Sbjct: 324 IIRMARELG 332


>gi|255009603|ref|ZP_05281729.1| asparagine synthetase B [Bacteroides fragilis 3_1_12]
 gi|313147382|ref|ZP_07809575.1| asparagine synthetase B [Bacteroides fragilis 3_1_12]
 gi|313136149|gb|EFR53509.1| asparagine synthetase B [Bacteroides fragilis 3_1_12]
          Length = 556

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 234 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAVGLKGAPDLVKA 286

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 287 REVAEYIGTVHHEINYTLQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 345

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                    ++    L       +R +  +  ++   +     L  ++S   +  
Sbjct: 346 MVLSGEGADEIFGGYLYFHKAPDARTFHEETVRKLSKLHLYDCLRANKSLAAWGV 400


>gi|237800230|ref|ZP_04588691.1| exsB protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806418|ref|ZP_04593122.1| exsB protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023087|gb|EGI03144.1| exsB protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027531|gb|EGI07586.1| exsB protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 229

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            R V+ +SGG+DS+ V A+   +GY     T+        S   G     + +  A RV
Sbjct: 8  GKRAVILLSGGLDSATVVAMALAEGYAC--YTM--------SFDYGQRHRAE-LDAAARV 56

Query: 80 CDTIN-VSHYVF 90
             +  V H V 
Sbjct: 57 ARDLGAVEHKVI 68


>gi|225711790|gb|ACO11741.1| ATP-binding domain-containing protein 3 [Caligus rogercresseyi]
          Length = 335

 Score = 42.1 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---------KASKRKGSCCAGQD 72
           RV +  SGG DS+V+A             T++  N R          +     S      
Sbjct: 53  RVAIGASGGKDSTVLAH------------TMKTLNDRYNYGLDLFLLSIDEGISGYRDDS 100

Query: 73  VYDARRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
           +   +R  DT  +   +  Y++ +     +               C  C    +   L  
Sbjct: 101 LETVKRNRDTYGLPLKILSYQDLYGWT--MDRIVEEVGR---KNNCTFCGVFRR-QALDR 154

Query: 132 VTRQLGADVLATGHYI 147
               L  D +ATGH  
Sbjct: 155 GAALLAVDKIATGHNA 170


>gi|313224566|emb|CBY20356.1| unnamed protein product [Oikopleura dioica]
          Length = 204

 Score = 42.1 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK 354
             +L  +   L +++   +GL E +  D    FV++      +P  +++ D  ++   +K
Sbjct: 41  HPALFTNNFTLMDLSHPVEGLLEISEDDVLSVFVRLYHRSPVIPAAIRKIDGHIFCWMDK 100

Query: 355 SEVGVASGQACVFY-------------TSDSNEARVLGGGIISGS 386
               +  G     Y                S E  ++GG  I  +
Sbjct: 101 PIQNLTRGHPVAIYIRKEQFGIDWEQSDDQSMEMLLIGGACIHSA 145


>gi|42521051|ref|NP_966966.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|61217299|sp|Q73FR9|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 431

 Score = 42.1 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 55/255 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DARRVCD 81
           V VA+SGGVDS V+  L            +  +  +       +      +  ++++  D
Sbjct: 21  VAVAVSGGVDSIVLLHL------------MTNWAKKNKLSLPIALTVNHGLRPESQKEAD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 +V  Y +         F  ++             R  ++  L    +      L
Sbjct: 69  ------FVVSYAKELGAK--ESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYL 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCR-----PMDLER--DQSYFLFATTQQQLCDLRF-PLG 193
              H+         D +    + R      +D     D   FL            F PL 
Sbjct: 121 LVAHH--------KDDQAETFLLRLERGSGVDGLSSMDYKSFLNGID-------IFRPLL 165

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +  +  +   A+   L   +   + D+      KY   + R     +   +I+     + 
Sbjct: 166 NFSRSEIEKYAKLHRLKWIEDRSNHDL------KYRRTLYRNLLKASDNQEILTERICLT 219

Query: 254 GRH-----NGIINYT 263
             H       +++YT
Sbjct: 220 ALHMKRAAKALMHYT 234


>gi|322377476|ref|ZP_08051967.1| ExsB protein [Streptococcus sp. M334]
 gi|321281676|gb|EFX58685.1| ExsB protein [Streptococcus sp. M334]
          Length = 217

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYETVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIRHHILDMSLLGQITENALTSDLEIKQKEGEVPNTFVDGRNHLFLSFAAIL--AKQRGM 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|312127688|ref|YP_003992562.1| argininosuccinate synthase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777707|gb|ADQ07193.1| argininosuccinate synthase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 405

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+SV+   LK +   +VI V + +         K           A +V 
Sbjct: 5   KVVLAYSGGLDTSVIIPWLKENFDCEVIAVVVDVGQEDDFEAIKEKAYKTG----ASKV- 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F N  I P           Y  G +        R +    L+++ 
Sbjct: 60  -------YIEDAKEEFVNEYIFPTLKAGAIYEGKYLLGTSMA------RPLIAKKLVNIA 106

Query: 134 RQLGADVLATG 144
           ++  AD +A G
Sbjct: 107 KKENADAIAHG 117


>gi|284047969|ref|YP_003398308.1| argininosuccinate synthase [Acidaminococcus fermentans DSM 20731]
 gi|283952190|gb|ADB46993.1| argininosuccinate synthase [Acidaminococcus fermentans DSM 20731]
          Length = 406

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 29/134 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +VV+A SGG+D+S +   LK + Y   +VI VT     +      + +    + +    
Sbjct: 7   KKVVLAYSGGLDTSCIIPWLKEN-YNNCEVITVT-----ADIGQGEEVAPVHDKAIKSGA 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
                     Y+ D  + F      P           Y  G          R +    L+
Sbjct: 61  SKA-------YILDLRDEFLREYAWPMVKSGAVYEKKYLLG------TSIARPIIAKYLV 107

Query: 131 SVTRQLGADVLATG 144
            +  + GAD +A G
Sbjct: 108 DIALKEGADAIAHG 121


>gi|261414858|ref|YP_003248541.1| PP-loop domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371314|gb|ACX74059.1| PP-loop domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327597|gb|ADL26798.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 286

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 30/136 (22%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL---LKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           +  ++ V +SGG DS ++A L   L R     +DV  + +                   +
Sbjct: 39  EGDKIAVCISGGKDSMLMAKLIQMLHRHSDVKFDVEYLVM-----DPGYNEINRQKIESN 93

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
                     + +   V      F   +     ++  +     PC  C   ++   L   
Sbjct: 94  -------AKLLEIPITV------FETNIFDVANNTERS-----PCYVC-AKMRRGHLYHK 134

Query: 133 TRQLGADVLATGHYIR 148
            + LG + +A GH++ 
Sbjct: 135 AKDLGCNKIALGHHLS 150


>gi|116334938|ref|YP_802433.1| putative tRNA(5-methylaminomethyl-2- thiouridylate)
           methyltransferase [Candidatus Carsonella ruddii PV]
 gi|116235219|dbj|BAF35067.1| putative tRNA(5-methylaminomethyl-2- thiouridylate)
           methyltransferase [Candidatus Carsonella ruddii PV]
          Length = 298

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 37/196 (18%)

Query: 115 LPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
                CN+ +K + +  +  +L    L TGHY R          ++      +D ++DQ 
Sbjct: 77  NLDFYCNKFIKINLVKQIIFKLN---LLTGHYFRI---------QKNFFFVSIDQKKDQC 124

Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234
           YFL          +   +G   K  +  + ++       K  +  ICF     +F     
Sbjct: 125 YFLNFK-----KKIHSNIGFFNKLIITYITKKKNFVCKCKKSTTGICFKINKNFF----F 175

Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294
            N  +    +I   N   L        Y +GQ       + +  F+V +    +++I+  
Sbjct: 176 CNYYVFENKNIFETNYCKL-------FYNLGQ-------LYKKNFIVKI--KYNQIIISK 219

Query: 295 RESLEVHRIYLREINW 310
              L   +I + ++N+
Sbjct: 220 YNYLSKTKILILKLNF 235


>gi|116619413|ref|YP_821569.1| asparagine synthase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222575|gb|ABJ81284.1| asparagine synthase (glutamine-hydrolyzing) [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 644

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDARRVCDTINV 85
           +SGGVDSS +AAL+K           + ++    +   G   A   ++  AR V   I  
Sbjct: 264 LSGGVDSSAIAALMK-----------RNFSGPVKTFAVGYQEAEFSELSYARHVAGAIGT 312

Query: 86  SHYVF 90
            H+  
Sbjct: 313 DHHEV 317


>gi|312886176|ref|ZP_07745792.1| Argininosuccinate synthase [Mucilaginibacter paludis DSM 18603]
 gi|311301331|gb|EFQ78384.1| Argininosuccinate synthase [Mucilaginibacter paludis DSM 18603]
          Length = 395

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 14/128 (10%)

Query: 20  DMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             +VV+A SGG+D+S     L +    +V  V   + N+   S+ +        +    +
Sbjct: 2   KKKVVLAYSGGLDTSFCCIYLTRDLDMEVHSV---IVNTGGFSEEE--------LQAVEK 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVTRQL 136
               + V SH+V D    F N  I              P       V + + + +  +++
Sbjct: 51  RAYEMGVTSHHVVDETINFYNTCIRYLVYGNVLKNNTYPLSVSAERVSQATAIANYAKEI 110

Query: 137 GADVLATG 144
            A+ +A G
Sbjct: 111 NAEYVAHG 118


>gi|260583058|ref|ZP_05850840.1| thiamine biosynthesis/tRNA modification protein ThiI [Haemophilus
           influenzae NT127]
 gi|260093909|gb|EEW77815.1| thiamine biosynthesis/tRNA modification protein ThiI [Haemophilus
           influenzae NT127]
          Length = 485

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L  +      K            +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGTAHEIGVKQMAYHIW-----QRYSSS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|227486179|ref|ZP_03916495.1| argininosuccinate synthase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235810|gb|EEI85825.1| argininosuccinate synthase [Anaerococcus lactolyticus ATCC 51172]
          Length = 413

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            +  +VV+A SGG+D+SV+   L  +G  +VI V     +      +       + +   
Sbjct: 10  KEAKKVVLAYSGGLDTSVMVTWLMENGAKEVICV-----SVDLGQVKDPKAMEEKAIKSG 64

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV----KFSDLLSV 132
            +         Y  + E+ F   V      S  AG            +        L+ V
Sbjct: 65  AK-------KFYNINVEDEF---VEEYDFKSLMAGAKYENVYLLGTAIARPLISKVLVDV 114

Query: 133 TRQLGADVLATG 144
             + GAD++  G
Sbjct: 115 ANKEGADLIVHG 126


>gi|218281546|ref|ZP_03487975.1| hypothetical protein EUBIFOR_00540 [Eubacterium biforme DSM 3989]
 gi|218217335|gb|EEC90873.1| hypothetical protein EUBIFOR_00540 [Eubacterium biforme DSM 3989]
          Length = 396

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             + +V +SGG+DS V   L+ + G  +  +         +          + +  AR V
Sbjct: 176 GGKAMVLLSGGIDSPVACYLMMKRGVHIECIH------YASPPYTSQNAQEKVMELARLV 229

Query: 80  C-DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                +V  +V  + +  + A+      SYA        +   R +       + ++  A
Sbjct: 230 SGYQGDVLVHVVPFTDL-QLAIYQNADESYA--------ITLMRRMMMRIATGLAQKRHA 280

Query: 139 DVLATGHYI 147
             +ATG  I
Sbjct: 281 QAIATGESI 289


>gi|160895343|ref|ZP_02076114.1| hypothetical protein CLOL250_02902 [Clostridium sp. L2-50]
 gi|156863036|gb|EDO56467.1| hypothetical protein CLOL250_02902 [Clostridium sp. L2-50]
          Length = 395

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 12  LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           L +  N K M     +SGG+DS V   ++ + G  +  V         A          +
Sbjct: 174 LPVGTNGKGM---ALLSGGIDSPVATYMIAKRGVQMEAVYFH------APPFTSERAKEK 224

Query: 72  DVYDARRVCDTIN-VSHYVFDYEE 94
            +  A  V D    +  +V ++ +
Sbjct: 225 VIDLACLVADYAGAIKLHVVNFAD 248


>gi|15894260|ref|NP_347609.1| argininosuccinate synthase [Clostridium acetobutylicum ATCC 824]
 gi|24211521|sp|Q97KE6|ASSY_CLOAB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|15023879|gb|AAK78949.1|AE007613_5 Argininosuccinate synthase [Clostridium acetobutylicum ATCC 824]
 gi|325508387|gb|ADZ20023.1| argininosuccinate synthase [Clostridium acetobutylicum EA 2018]
          Length = 400

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +VV+A SGG+D+SV    LK + YD  VI V + +       K K           A ++
Sbjct: 4   KVVLAYSGGLDTSVTIPWLKDN-YDVEVIAVCVNVGQEDDMDKVKEKAVNSG----AAKI 58

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   YV D +E F    +             Y  G +        R +    L+ V
Sbjct: 59  --------YVEDVKEEFVTEYLYNAIKWNATYEGKYLLGTSFA------RPLIAKKLVEV 104

Query: 133 TRQLGADVLATG 144
             + GA  +  G
Sbjct: 105 AHKEGAKYICHG 116


>gi|297618320|ref|YP_003703479.1| argininosuccinate synthase [Syntrophothermus lipocalidus DSM 12680]
 gi|297146157|gb|ADI02914.1| argininosuccinate synthase [Syntrophothermus lipocalidus DSM 12680]
          Length = 401

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +VV+A SGG+D+S++   LK + GY+VI           A   +G   AG +    R   
Sbjct: 3   KVVLAYSGGLDTSIIIPWLKENYGYEVIA--------MCADLGQGEELAGLEEKALRSGA 54

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D  E F    I P           Y  G +        R +    L+ + 
Sbjct: 55  GK----VYIEDVREEFVRDYIFPVLRAGAIYEGKYLLGTSFA------RPLIARKLVEIA 104

Query: 134 RQLGADVLATG 144
            + GA  +A G
Sbjct: 105 EKEGATAVAHG 115


>gi|251770826|gb|EES51414.1| probable ATPase, PP-loop superfamily protein [Leptospirillum
           ferrodiazotrophum]
          Length = 312

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 22  RVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            V+VA+SGG DS +    +L R GY   G  L L     +++ +G               
Sbjct: 49  HVLVAVSGGKDS-LALWDILTRLGYRTTGFHLDLGIGEYSAESRGH---------VEAFA 98

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
               +   V    E  R++V         A   P  C  C  + ++     V     A V
Sbjct: 99  SRHGLPLVV----ESLRDSVNGSVTDIAQATRRPA-CSGCGMSKRY-FFNKVALATNATV 152

Query: 141 LATGHYI 147
           LATGH +
Sbjct: 153 LATGHNL 159


>gi|295398455|ref|ZP_06808494.1| argininosuccinate synthase [Aerococcus viridans ATCC 11563]
 gi|294973319|gb|EFG49107.1| argininosuccinate synthase [Aerococcus viridans ATCC 11563]
          Length = 429

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V++A SGG+D+SV+   LK             YN  +     G+    +D    +   
Sbjct: 9   KKVLLAYSGGLDTSVIIPWLKE-----------NYNDCEVIGMTGNVGQEEDFEFLKEKA 57

Query: 81  DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGA 138
                   YV D  E F    I P   + A  E+         R +    ++ +      
Sbjct: 58  VACGATKLYVEDLREEFITDYIFPAIQAGAKYESTYLLGTAYARPLIAKRMVEIAHLEDC 117

Query: 139 DVLATG 144
           D +  G
Sbjct: 118 DAIVHG 123


>gi|124514781|gb|EAY56293.1| NAD+ synthase [Leptospirillum rubarum]
          Length = 592

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           V+V +SGG+DS++VAA+     G + V G+ +
Sbjct: 336 VLVGLSGGIDSALVAAIATDALGAEHVHGLFM 367


>gi|57642215|ref|YP_184693.1| ATP-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160539|dbj|BAD86469.1| ATP-binding protein [Thermococcus kodakarensis KOD1]
          Length = 228

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          MRV V  SGG DS+       + G++V     +   S  +   +       +++      
Sbjct: 1  MRVAVLYSGGKDSNYALYWALKQGFEV-----KYLVSMVSESDESYMYHVPNIHLTELQA 55

Query: 81 DTINVSH 87
            I +  
Sbjct: 56 RAIGIPL 62


>gi|325968454|ref|YP_004244646.1| PP-loop domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707657|gb|ADY01144.1| PP-loop domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 338

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 77/211 (36%), Gaps = 38/211 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALL---KRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQ 71
            +  ++ +A+SGG DS  +  LL   ++ G        +       S  +G   SC    
Sbjct: 49  NEGDKIGIAISGGKDSLTLMYLLGKFRKQGKLP-----KNVELMAFSINEGHPYSCFYRM 103

Query: 72  DVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
              D  +++ +  ++ + V+ ++E F           ++ G     C           L 
Sbjct: 104 ARSDYVQKLSEEYDIPYKVYTFKELFGVTATDVAHGLWSKGINVHMCTID------GVLR 157

Query: 131 SVTR-----QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
                    +LG   +ATGH +        D + + ++   +  + D+  F +   + ++
Sbjct: 158 RRAMNIIGHKLGLTKIATGHNL--------DDEAQTVLLNVLSNDLDR--FAWFGPKPEI 207

Query: 186 CDLRF-----PLGDMKKESVRDLAREMGLDI 211
               F     PL  +++E +   A   G+ +
Sbjct: 208 DREGFIPRIKPLRFVREEEIAIYAHYHGIPL 238


>gi|262341081|ref|YP_003283936.1| bifunctional argininosuccinate synthase/acetyltransferase activity
           of N-acetylglutamate synthase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272418|gb|ACY40326.1| bifunctional argininosuccinate synthase/acetyltransferase activity
           of N-acetylglutamate synthase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 588

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           ++V+A SGG+D+S     L ++ Y+V  V   + N+   +K +      +++ D A  + 
Sbjct: 193 KIVLAYSGGLDTSYCLKYLIQEKYEVHTV---IINTGGFNKDE-----LEEIEDRAISIG 244

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD--LLSVTRQLGA 138
                SH   +  E +    I              P    +  + F    +      + A
Sbjct: 245 SK---SHKTIEAIEEYYQNCIKYLIFGNILKNNTYPLSVSSERI-FQAIKIAQYATFIKA 300

Query: 139 DVLATG 144
             +A G
Sbjct: 301 KAIAHG 306


>gi|253580715|ref|ZP_04857979.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848086|gb|EES76052.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 393

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + ++ +SGG+DS V   ++ + G  +  V         A          + V  A++V
Sbjct: 180 NGKAMLLLSGGIDSPVAGYMIAKRGVKIDAVYFH------APPYTSERAKQKVVDLAKQV 233

Query: 80  CDTIN-VSHYVFDYEE 94
                 +  +V ++ +
Sbjct: 234 AKYSGPIRLHVINFTD 249


>gi|238763959|ref|ZP_04624915.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638]
 gi|238697776|gb|EEP90537.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638]
          Length = 461

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 19/99 (19%)

Query: 1  MVVSEATR---LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLY 55
          M  + AT    LN L   +  +   V+V  SGG+DSSV+  LL         V L  +L 
Sbjct: 1  MNATPATPNVLLNPL-FAQFGEQRHVLVGFSGGLDSSVLLHLL---------VCLRDKLI 50

Query: 56 NS---RKASKRKGSCCAGQDV-YDARRVCDTINVSHYVF 90
               R      G            ++ C+  N+   V 
Sbjct: 51 PDLMIRAIHIHHGLNPLADTWVRHCQQQCEQWNIPLEVV 89


>gi|288869676|ref|ZP_05975624.2| ExsB protein [Methanobrevibacter smithii DSM 2374]
 gi|288860993|gb|EFC93291.1| ExsB protein [Methanobrevibacter smithii DSM 2374]
          Length = 227

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
          + V +SGG+DS V   +   D Y++ G+T             G     Q++  +  +C  
Sbjct: 7  IAV-LSGGLDSCVATCVYAED-YEIHGITF----------NYGQKSFKQELKASEEICKK 54

Query: 83 INVSHYVFDY 92
          +  +H V D 
Sbjct: 55 MGFTHEVIDL 64


>gi|118602400|ref|YP_903615.1| asparagine synthase (glutamine-hydrolyzing) [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567339|gb|ABL02144.1| asparagine synthase (glutamine-hydrolyzing) [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 591

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYD 46
           N  D+ + V +SGG+DSS++ ALL+  G++
Sbjct: 255 NAADVPIGVLLSGGLDSSLLVALLREAGHE 284


>gi|331002889|ref|ZP_08326402.1| tRNA sulfurtransferase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413182|gb|EGG92556.1| tRNA sulfurtransferase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 394

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + R ++ +SGG+DS V   ++ + G  V  V         A          + +  A+ V
Sbjct: 180 NGRAMLLLSGGIDSPVAGYMIAKRGVRVEAVYFH------APPYTSERAKIKVIELAQLV 233

Query: 80  CDTIN-VSHYVFDYEE 94
                 V+ ++ ++ +
Sbjct: 234 SKYTGPVNLHIINFTD 249


>gi|324513981|gb|ADY45719.1| Asparagine synthetase [glutamine-hydrolyzing] [Ascaris suum]
          Length = 413

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 20/173 (11%)

Query: 19  KDMRVVVAMSGGVDSS-VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            D  + V +SGG+DSS V +  +K          ++  N    S   G      DV  AR
Sbjct: 65  SDAPIGVLLSGGLDSSLVSSIAMKE---------MRRRNLPLRSFSIGLDANSPDVIAAR 115

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG-----ETPLPCVD-----CNRTVKFS 127
            V + +   H+ F +  +     +                  +P         +  +K  
Sbjct: 116 CVAEFLGTEHHEFHFTIQEGIECLRKLIWHLETYDVTSVRASVPMYFLSEKISSMGIKVV 175

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                  ++    L   +      +  +  +R R++     L  D+S    A 
Sbjct: 176 LSGEGADEIFGGYLYFHNAPSDEQFQQETIRRVRLLSTADCLRADKSCMAHAL 228


>gi|319652239|ref|ZP_08006357.1| hypothetical protein HMPREF1013_02970 [Bacillus sp. 2_A_57_CT2]
 gi|317396062|gb|EFV76782.1| hypothetical protein HMPREF1013_02970 [Bacillus sp. 2_A_57_CT2]
          Length = 492

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 15/59 (25%)

Query: 1  MVVSEATRLNSLDLDKNPKD--------MRVVV---AMSGGVDSSVVAALLKRDGYDVI 48
          MV     ++N+ ++    ++         +++V    MSG     V A+LLK  G+DV 
Sbjct: 1  MVFYRDPQVNTEEMLSIIRNGLGISKVQKKIIVVGAGMSG----LVAASLLKAAGHDVT 55


>gi|197103514|ref|YP_002128891.1| argininosuccinate synthase [Phenylobacterium zucineum HLK1]
 gi|196476934|gb|ACG76462.1| argininosuccinate synthase [Phenylobacterium zucineum HLK1]
          Length = 424

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G+++  AR   
Sbjct: 8   KKVVLAYSGGLDTSIILKWLQTE-YRAEVVTF-----------TADLGQGEELTPAREKA 55

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             + +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 56  LMLGIKPENIFIDDLREEFVRDFVFPMFRANTVYEGQYLLGTSIARPLIAKRQI------ 109

Query: 131 SVTRQLGADVLATG 144
            + RQ+GAD +  G
Sbjct: 110 EIARQVGADAVCHG 123


>gi|194899097|ref|XP_001979099.1| GG10357 [Drosophila erecta]
 gi|190650802|gb|EDV48057.1| GG10357 [Drosophila erecta]
          Length = 419

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGG+D+S +   L    ++V+ V                    +D   A +    
Sbjct: 6   VILAYSGGLDTSCILKWLLDKHFEVVCV-------------LADVGQKEDFTAAEKKALK 52

Query: 83  INVSHYVF-DYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           I     +  D ++ F    I P           Y  G +   PC+          L+ V 
Sbjct: 53  IGAKKVILADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISV-------ALMEVA 105

Query: 134 RQLGADVLATG 144
           R  GA  LA G
Sbjct: 106 RDYGAKYLAHG 116


>gi|254360930|ref|ZP_04977076.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica
          PHL213]
 gi|261493843|ref|ZP_05990355.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261495109|ref|ZP_05991573.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|153092409|gb|EDN73472.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica
          PHL213]
 gi|261309179|gb|EEY10418.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261310445|gb|EEY11636.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 421

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          ++ +SGGVDS V+  L  R  + V  + +    S  A      C            C  +
Sbjct: 22 LIGLSGGVDSVVLLHLFARTSFHVRAIYVHHGLSPNADDWAAFCEQY---------CKRL 72

Query: 84 NVSHY 88
          N+   
Sbjct: 73 NIPFI 77


>gi|126329025|ref|XP_001378316.1| PREDICTED: similar to cancer-associated gene protein [Monodelphis
           domestica]
          Length = 444

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 23  VVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V V  SGG DS+V+A +L+     +  +G+ L+L     A            +   RR  
Sbjct: 100 VAVGASGGKDSTVLAHVLQILDARHS-LGLDLRL----VAVDEGIGGYRDAALAAVRRQA 154

Query: 81  DTINVSHYVFDYEERF----RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
               +   V  Y E F     + V    A           C      ++   L    +++
Sbjct: 155 ARWRLPLTVVAYVELFGGWTMDEVARRAAQEPGRAR---ACCTFCGVLRRRALEEGAQRV 211

Query: 137 GADVLATGHYI 147
           GA  + TGH  
Sbjct: 212 GATHIVTGHNA 222


>gi|121635070|ref|YP_975315.1| NH(3)-dependent NAD synthetase [Neisseria meningitidis FAM18]
 gi|120866776|emb|CAM10529.1| NH(3)-dependent NAD synthetase [Neisseria meningitidis FAM18]
 gi|325132443|gb|EGC55136.1| NAD+ synthetase [Neisseria meningitidis M6190]
 gi|325138217|gb|EGC60786.1| NAD+ synthetase [Neisseria meningitidis ES14902]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRPTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGIHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|242066610|ref|XP_002454594.1| hypothetical protein SORBIDRAFT_04g034030 [Sorghum bicolor]
 gi|241934425|gb|EES07570.1| hypothetical protein SORBIDRAFT_04g034030 [Sorghum bicolor]
          Length = 364

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           RV +  SGG DS+V+A +L     +   G+ L L +  +      +      +   +R  
Sbjct: 68  RVAIGASGGKDSTVLAYVLSELNRHHNYGLDLFLLSIDEG----ITGYRDDSLETVKRNE 123

Query: 81  DTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
               +   +  Y++ +              A      C  C    +   L      L AD
Sbjct: 124 IQYGLPLKIVSYKDLYGWT-----MDDIVKAIGLKNNCTFCGVFRR-QALDRGAALLKAD 177

Query: 140 VLATGHYI 147
            + TGH  
Sbjct: 178 KIVTGHNA 185


>gi|227502742|ref|ZP_03932791.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium accolens ATCC 49725]
 gi|227076472|gb|EEI14435.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL 39
           ++ R + A+SGGVDS+V AAL
Sbjct: 206 EEGRAICALSGGVDSAVAAAL 226


>gi|160902337|ref|YP_001567918.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95]
 gi|189035968|sp|A9BJK2|TILS_PETMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|160359981|gb|ABX31595.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95]
          Length = 311

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 18  PKDMRVVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
            K  ++++ +SGG DS     V++ L K  G+++    L              C   +  
Sbjct: 21  NKYDKILLGVSGGKDSMSLLHVMSKLSKTMGFEISVAHL------------NHCMREEAD 68

Query: 74  YD---ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D    R+ C  + +          F   V      +Y+  +  +      R +++    
Sbjct: 69  NDEAFVRQACWKLKIPF--------FSKKV---DVFTYSK-KNKVGVEVAGRKLRYEFFY 116

Query: 131 SVTRQLGADVLATGHY 146
              R+L  + +AT H+
Sbjct: 117 ETLRRLSYNKIATAHH 132


>gi|71909651|ref|YP_287238.1| ExsB [Dechloromonas aromatica RCB]
 gi|110816224|sp|Q478G3|QUEC_DECAR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|71849272|gb|AAZ48768.1| preQ(0) biosynthesis protein QueC [Dechloromonas aromatica RCB]
          Length = 225

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+   A+ +  G++          S   S   G     + V  A RV 
Sbjct: 3  KKAVVLLSGGLDSATCLAIARSQGFE----------SYCLSFNYGQRHCAELVA-ADRVV 51

Query: 81 DTIN-VSHYVFDY 92
            +    H V ++
Sbjct: 52 KALGAAEHRVLNF 64


>gi|89070087|ref|ZP_01157417.1| NAD(+) synthase [Oceanicola granulosus HTCC2516]
 gi|89044308|gb|EAR50451.1| NAD(+) synthase [Oceanicola granulosus HTCC2516]
          Length = 552

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++ +SGG+DS++VA +     G + +   +                +   + DAR V 
Sbjct: 286 KVLLGLSGGIDSAIVATVAADALGPENVRCVM----------LPSEYTSETSLEDARAVA 335

Query: 81  DTINVSHYVF 90
             +   +   
Sbjct: 336 ANLGCRYDFV 345


>gi|304415435|ref|ZP_07396084.1| putative NAD synthase [Candidatus Regiella insecticola LSR1]
 gi|304282699|gb|EFL91213.1| putative NAD synthase [Candidatus Regiella insecticola LSR1]
          Length = 546

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 19/154 (12%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DS++  A+       V  +T +   +     R  S    + +  AR+     
Sbjct: 285 ILGLSGGIDSALTLAIA------VDALTAKNVQALMMPFRYTS---EESINYARQQAQKQ 335

Query: 84  NVSHYVFDYEERFRNAVI---VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
            +     D    F +AV+    PF +      T        R +    L+++  + G  V
Sbjct: 336 KIELKEIDIHPIF-DAVMGQLAPFFADRKKDTTEENLQARCRGM---LLMAMANKFGHIV 391

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174
           L TG+     +           M    D+ +D S
Sbjct: 392 LTTGNKSELAVGYS---TLYGDMAGGFDVLKDVS 422


>gi|182678257|ref|YP_001832403.1| argininosuccinate synthase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182634140|gb|ACB94914.1| Argininosuccinate synthase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 426

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR  
Sbjct: 24  KKVVLAYSGGLDTSIILKWLQTTYGCEVVTFT-------------ADLGQGEELGPARDK 70

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
              + +     ++ D  E F    + P   +       Y  G +    +   + +     
Sbjct: 71  ALLLGIKPENIFIEDLREEFVRDYVFPMFRANTQYEGLYLLGTSIARPLIAKKQI----- 125

Query: 130 LSVTRQLGADVLATG 144
             + R  GAD +A G
Sbjct: 126 -EIARATGADAVAHG 139


>gi|160940060|ref|ZP_02087405.1| hypothetical protein CLOBOL_04949 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436640|gb|EDP14407.1| hypothetical protein CLOBOL_04949 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 26/138 (18%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
           D +      +V V +SGG DS ++A  L++         L+   SR   + +        
Sbjct: 32  DYEMIKDGDKVAVCISGGKDSMLLAKCLQQ---------LK-RQSRTDFELEFIVMDPGY 81

Query: 73  VYDARRV----CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128
             D R +       +N+   +FD  + F + V+              PC  C   ++   
Sbjct: 82  NPDNRNLIEDNAALMNIPVRIFD-SDIF-DIVVD--VEQ-------SPCYLC-ARMRRGY 129

Query: 129 LLSVTRQLGADVLATGHY 146
           L +  R+LG + +A GH+
Sbjct: 130 LYAHARELGCNKIALGHH 147


>gi|315645293|ref|ZP_07898418.1| possible aluminum resistance protein [Paenibacillus vortex V453]
 gi|315279335|gb|EFU42641.1| possible aluminum resistance protein [Paenibacillus vortex V453]
          Length = 223

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 25/196 (12%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           + K+ + VV  SGG DS+       +   +V  VT   +N  +    +  C        A
Sbjct: 2   DKKNKKAVVVFSGGQDSTTCLFWAMKQFDEVEAVT---FNYGQRHALEIEC--------A 50

Query: 77  RRVCDTINVSHYVFDYE---ERFRNAVIVPFAS-SYAAGETPLPCVDCNRTVKFSDLLSV 132
            ++ D + V   + D     +  +NA+        +  GE P   V+    +  S     
Sbjct: 51  NQIADELGVKWTLLDMSLLGQLTQNALTRDDVEIVHNDGEFPSTFVEGRNHLFLSFAAVF 110

Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192
            + +GA  + TG           D       CR   ++        A     +     PL
Sbjct: 111 AKGVGARHIVTG-------VCETDFSGYPD-CRDDFVKSLNVTLNLAMDHNFIIHT--PL 160

Query: 193 GDMKKESVRDLAREMG 208
             + K    ++A ++G
Sbjct: 161 MWINKAETWEMADQLG 176


>gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
 gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
          Length = 480

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 27/190 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV +SGG DS  +   L     +     L++  +      +G     +D+     +C  
Sbjct: 29  IVVGVSGGPDSLALLYYLLEKRKE---AKLKIVVAHVDHMFRGDESY-EDLQFVENLCRE 84

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           I V               +  +   Y             R  +++ L  + ++  A  +A
Sbjct: 85  IGVICETIRIN-------VSQYQQQYGMNAQ-----MAARECRYAFLERIMKKYEASYVA 132

Query: 143 TGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            GH+       GDD        + R     +  +             L  PL  + K+ +
Sbjct: 133 LGHH-------GDDQVETILMRLVRGS-TSKGYAGIAAKRPFHS-GYLIRPLLAVTKKEI 183

Query: 201 RDLAREMGLD 210
               + +G+ 
Sbjct: 184 NAYCKRIGIT 193


>gi|269127252|ref|YP_003300622.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermomonospora curvata DSM 43183]
 gi|268312210|gb|ACY98584.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermomonospora curvata DSM 43183]
          Length = 414

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
           R +V +SGG+DS V A  + R G  V  +  
Sbjct: 198 RALVLLSGGIDSPVAAYRMMRRGLRVDYLHF 228


>gi|168209936|ref|ZP_02635561.1| argininosuccinate synthase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711963|gb|EDT24145.1| argininosuccinate synthase [Clostridium perfringens B str. ATCC
           3626]
          Length = 403

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + G +VI V              G+     ++   +   
Sbjct: 6   KVILAYSGGLDTSIIIPWLKENYGCEVIAV-------------VGNVGQSDELVGLKEKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  + F    I P           Y  G +        R +    L+ +
Sbjct: 53  IKTGASKIYIEDLTKEFVEDYIFPTIQAGAKYEGKYLLGTSFA------RPIIAKRLVEI 106

Query: 133 TRQLGADVLATG 144
            +  GAD +  G
Sbjct: 107 AKLEGADAICHG 118


>gi|168204658|ref|ZP_02630663.1| argininosuccinate synthase [Clostridium perfringens E str. JGS1987]
 gi|170663838|gb|EDT16521.1| argininosuccinate synthase [Clostridium perfringens E str. JGS1987]
          Length = 403

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + G +VI V              G+     ++   +   
Sbjct: 6   KVILAYSGGLDTSIIIPWLKENYGCEVIAV-------------VGNVGQSDELVGLKEKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  + F    I P           Y  G +        R +    L+ +
Sbjct: 53  IKTGASKIYIEDLTKEFVEDYIFPTIQAGAKYEGKYLLGTSFA------RPIIAKRLVEI 106

Query: 133 TRQLGADVLATG 144
            +  GAD +  G
Sbjct: 107 AKLEGADAICHG 118


>gi|169344424|ref|ZP_02865393.1| argininosuccinate synthase [Clostridium perfringens C str. JGS1495]
 gi|182624137|ref|ZP_02951924.1| argininosuccinate synthase [Clostridium perfringens D str. JGS1721]
 gi|169297344|gb|EDS79453.1| argininosuccinate synthase [Clostridium perfringens C str. JGS1495]
 gi|177910753|gb|EDT73113.1| argininosuccinate synthase [Clostridium perfringens D str. JGS1721]
          Length = 403

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + G +VI V              G+     ++   +   
Sbjct: 6   KVILAYSGGLDTSIIIPWLKENYGCEVIAV-------------VGNVGQSDELVGLKEKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  + F    I P           Y  G +        R +    L+ +
Sbjct: 53  IKTGASKIYIEDLTKEFVEDYIFPTIQAGAKYEGKYLLGTSFA------RPIIAKRLVEI 106

Query: 133 TRQLGADVLATG 144
            +  GAD +  G
Sbjct: 107 AKLEGADAICHG 118


>gi|118602200|ref|YP_903415.1| argininosuccinate synthase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166989396|sp|A1AVI7|ASSY_RUTMC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|118567139|gb|ABL01944.1| argininosuccinate synthase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 403

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+   Y    VT                  G++V  AR   
Sbjct: 7   KKVVLAYSGGLDTSIIVKWLQDT-YRCEVVTF-----------TADIGQGEEVELARTKA 54

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
               V   Y+ +  E F    + P           Y  G +    +   R      L+ +
Sbjct: 55  KAAGVKEVYIENLREEFVRDFVFPMFRANAIYEGEYLLGTSIARPLISKR------LVEI 108

Query: 133 TRQLGADVLATG 144
             Q  AD ++ G
Sbjct: 109 AHQEDADAISHG 120


>gi|110799516|ref|YP_695135.1| argininosuccinate synthase [Clostridium perfringens ATCC 13124]
 gi|119361265|sp|Q0TTA5|ASSY_CLOP1 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|110674163|gb|ABG83150.1| argininosuccinate synthase [Clostridium perfringens ATCC 13124]
          Length = 403

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + G +VI V              G+     ++   +   
Sbjct: 6   KVILAYSGGLDTSIIIPWLKENYGCEVIAV-------------VGNVGQSDELVGLKEKA 52

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  + F    I P           Y  G +        R +    L+ +
Sbjct: 53  IKTGASKIYIEDLTKEFVEDYIFPTIQAGAKYEGKYLLGTSFA------RPIIAKRLVEI 106

Query: 133 TRQLGADVLATG 144
            +  GAD +  G
Sbjct: 107 AKLEGADAICHG 118


>gi|18309673|ref|NP_561607.1| argininosuccinate synthase [Clostridium perfringens str. 13]
 gi|24211506|sp|Q8XMJ7|ASSY_CLOPE RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|18144350|dbj|BAB80397.1| argininosuccinate synthase [Clostridium perfringens str. 13]
          Length = 405

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+S++   LK + G +VI V              G+     ++   +   
Sbjct: 8   KVILAYSGGLDTSIIIPWLKENYGCEVIAV-------------VGNVGQSDELVGLKEKA 54

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  + F    I P           Y  G +        R +    L+ +
Sbjct: 55  IKTGASKIYIEDLTKEFVEDYIFPTIQAGAKYEGKYLLGTSFA------RPIIAKRLVEI 108

Query: 133 TRQLGADVLATG 144
            +  GAD +  G
Sbjct: 109 AKLEGADAICHG 120


>gi|325130399|gb|EGC53163.1| NAD+ synthetase [Neisseria meningitidis OX99.30304]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRPTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGIHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|260580728|ref|ZP_05848554.1| thiamine biosynthesis/tRNA modification protein ThiI [Haemophilus
           influenzae RdAW]
 gi|260092545|gb|EEW76482.1| thiamine biosynthesis/tRNA modification protein ThiI [Haemophilus
           influenzae RdAW]
          Length = 485

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L          G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGTVHEIGVKQMAYHIW--QRYSSS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+E+G
Sbjct: 327 MAKEIG 332


>gi|254448701|ref|ZP_05062159.1| exsB protein [gamma proteobacterium HTCC5015]
 gi|198261709|gb|EDY85996.1| exsB protein [gamma proteobacterium HTCC5015]
          Length = 222

 Score = 41.7 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI 48
           + VV +SGG+DSS V AL + +GY   
Sbjct: 2  KKAVVLLSGGLDSSTVLALARAEGYQCH 29


>gi|315637305|ref|ZP_07892524.1| argininosuccinate synthase [Arcobacter butzleri JV22]
 gi|315478469|gb|EFU69183.1| argininosuccinate synthase [Arcobacter butzleri JV22]
          Length = 413

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S++   L+ + Y  +VI  T                  G++V  AR+
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQDE-YNAEVITFT-------------ADLGQGEEVEPARQ 52

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
                 +     ++ D +E F    + P           Y  G          R +    
Sbjct: 53  KAIACGIKPENVFILDIKEEFVKDYVFPMFRANAIYEGEYLLG------TSIARPLIAKK 106

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  Q GA+ ++ G
Sbjct: 107 LVEIANQKGAEAVSHG 122


>gi|283955284|ref|ZP_06372784.1| hypothetical protein C414_000440022 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793198|gb|EFC31967.1| hypothetical protein C414_000440022 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 251

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 28/132 (21%)

Query: 22  RVVVAMSGGVDSSVVAALLKR-DGY-----DVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           RV++ +SGG DS  +  LL R   +     ++  VTL             S   G+D   
Sbjct: 27  RVLLGLSGGKDSLALVHLLNRMQAHAPFKFELEAVTL-------------SYGMGEDYSH 73

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C+   + H V D    +   V        ++      C   +R ++   L +   +
Sbjct: 74  LHAHCEEHGIKHSVLD-SNIY--EVSGDTIRENSSF-----CSYFSR-MRRGALYTYALE 124

Query: 136 LGADVLATGHYI 147
            G + LA  H++
Sbjct: 125 QGFNKLAIAHHL 136


>gi|157737522|ref|YP_001490205.1| argininosuccinate synthase [Arcobacter butzleri RM4018]
 gi|172045650|sp|A8EUB2|ASSY_ARCB4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157699376|gb|ABV67536.1| argininosuccinate synthase [Arcobacter butzleri RM4018]
          Length = 413

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S++   L+ + Y  +VI  T                  G++V  AR+
Sbjct: 7   KKVVLAYSGGLDTSIILKWLQDE-YNAEVITFT-------------ADLGQGEEVEPARQ 52

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
                 +     ++ D +E F    + P           Y  G          R +    
Sbjct: 53  KAIACGIKPENVFILDIKEEFVKDYVFPMFRANAIYEGEYLLG------TSIARPLIAKK 106

Query: 129 LLSVTRQLGADVLATG 144
           L+ +  Q GA+ ++ G
Sbjct: 107 LVEIANQKGAEAVSHG 122


>gi|150020898|ref|YP_001306252.1| PP-loop domain-containing protein [Thermosipho melanesiensis BI429]
 gi|149793419|gb|ABR30867.1| PP-loop domain protein [Thermosipho melanesiensis BI429]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 23/133 (17%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           K+ +++V++SGG DS   S V + LK                       G     +   +
Sbjct: 40  KNKKILVSISGGKDSVVVSYVLSKLKEKY---------NLQIEYFFIDLGIPIFSEKSKE 90

Query: 76  AR-RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
               V   +N    +++ E+     ++      Y       PC  C    ++  L     
Sbjct: 91  ISLEVTKKLNNELIIYNLEKEDGFTIMD---IKYK------PCSYCGMIRRY-ILNKYAY 140

Query: 135 QLGADVLATGHYI 147
           +   D +  GH +
Sbjct: 141 ENNFDYVVLGHNL 153


>gi|118442853|ref|YP_878459.1| exsB protein [Clostridium novyi NT]
 gi|189038910|sp|A0Q1F7|QUEC_CLONN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|118133309|gb|ABK60353.1| exsB protein [Clostridium novyi NT]
          Length = 221

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
          + + +V  SGG DS+      K+   +VI V+   ++  +  K +  C        A+ +
Sbjct: 5  NEKAIVVFSGGQDSTTCLFWTKKRFKEVIAVS---FDYNQKHKLELEC--------AKEI 53

Query: 80 CDTINVSHYVFDY 92
          C   N+ H++ D 
Sbjct: 54 CSKYNIEHHILDL 66


>gi|78188748|ref|YP_379086.1| argininosuccinate synthase [Chlorobium chlorochromatii CaD3]
 gi|119361262|sp|Q3ASI2|ASSY_CHLCH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|78170947|gb|ABB28043.1| argininosuccinate synthase [Chlorobium chlorochromatii CaD3]
          Length = 399

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++ +A SGG+D+SV+   LK   Y  D++ VT             G+    +++ +    
Sbjct: 5   KIAIAYSGGLDTSVMIKWLKDK-YDADIVAVT-------------GNLGQQKEIENLESK 50

Query: 80  CDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
                  S +  D    F    I     + A  E   P      R +    L+ V     
Sbjct: 51  ALATGASSFHFVDLRTEFVEEYIWRALKAGALYEDVYPLATALGRPLLAKALVDVAVAEN 110

Query: 138 ADVLATG 144
             +LA G
Sbjct: 111 CTMLAHG 117


>gi|315224848|ref|ZP_07866669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga ochracea F0287]
 gi|314945251|gb|EFS97279.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga ochracea F0287]
          Length = 428

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 24/130 (18%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVT--LQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           A+SGG+DS V+A LL   G +++      QL  +                   R     +
Sbjct: 16  AISGGIDSVVLAHLLYTHGIELLLAHCNFQLRGTESDDDE----------AFVRTFAAEL 65

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V              V       YA+       +   R +++     +      D +AT
Sbjct: 66  GVPL-----------QVKRFDTHQYASFHQLNTQLAA-RELRYQWFDELASTHFCDAIAT 113

Query: 144 GHYIRSRLYV 153
            H+    L  
Sbjct: 114 AHHANDNLET 123


>gi|296273180|ref|YP_003655811.1| argininosuccinate synthase [Arcobacter nitrofigilis DSM 7299]
 gi|296097354|gb|ADG93304.1| argininosuccinate synthase [Arcobacter nitrofigilis DSM 7299]
          Length = 414

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 32/136 (23%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S +   L+ + Y  +VI  T                  G++V  AR 
Sbjct: 7   KKVVLAYSGGLDTSTILKWLQDE-YNAEVITFT-------------ADLGQGEEVEPART 52

Query: 79  VCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSD 128
                 +     ++ D +E F    + P           Y  G +    +   + +    
Sbjct: 53  KALACGIKPENIFILDIKEEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKKQI---- 108

Query: 129 LLSVTRQLGADVLATG 144
              +  ++GAD ++ G
Sbjct: 109 --EIAHKMGADAVSHG 122


>gi|284929532|ref|YP_003422054.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A]
 gi|284809976|gb|ADB95673.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A]
          Length = 319

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 38/144 (26%)

Query: 10  NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL---YNSRK--ASKRK 64
           NSL L   P   R++VA+SGG DS     LLK        + + L   ++     A    
Sbjct: 15  NSLIL---PPKKRILVAVSGGQDS---LCLLK--------IIMDLRIKWDWEVSIAHCDH 60

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
           G           +++ +  N+  Y    +      +    A  +                
Sbjct: 61  GWPSDTGISDHVKKISEEWNIDFY---LKRTQILKITESIAREW---------------- 101

Query: 125 KFSDLLSVTRQLGADVLATGHYIR 148
           ++  LL V R+     + TGH + 
Sbjct: 102 RYKVLLEVARENNFTAIVTGHTLS 125


>gi|269214381|ref|ZP_05986458.2| NAD+ synthetase [Neisseria lactamica ATCC 23970]
 gi|269209961|gb|EEZ76416.1| NAD+ synthetase [Neisseria lactamica ATCC 23970]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGIHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|156311278|ref|XP_001617757.1| hypothetical protein NEMVEDRAFT_v1g156799 [Nematostella vectensis]
 gi|156195657|gb|EDO25657.1| predicted protein [Nematostella vectensis]
          Length = 406

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK-GSCCAGQDVYDARRVCDTI 83
           V +SGG+DSS+ +++ KR           L +S+       G      D+  AR+V + +
Sbjct: 224 VLLSGGLDSSLTSSIAKRL----------LGDSKTLHSFSIGLDENAPDLVAARKVAEVL 273

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYA-------AGETPLPCVD---CNRTVKFSDLLSVT 133
              H+   +        I                  TP+  +     +  +K        
Sbjct: 274 GTEHHEVYFSVEEGIKNIEKLIWHLETYDVTSIRASTPMFFMSKKITDLGIKMVLSGEGA 333

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
            ++    L   +   +  +  +  +R + +     L  D+S      
Sbjct: 334 DEIFGGYLYFRNAPSADDFQKETIERVQKLFTADLLRADKSTMAHGL 380


>gi|21243864|ref|NP_643446.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
 gi|81800086|sp|Q8PHW1|QUEC_XANAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|21109465|gb|AAM37982.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + VV +SGG+DS+ V AL +  G+ V  +
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVYAL 31


>gi|302307167|ref|NP_983745.2| ADL350Cp [Ashbya gossypii ATCC 10895]
 gi|299788869|gb|AAS51569.2| ADL350Cp [Ashbya gossypii ATCC 10895]
          Length = 508

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 4   SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
           S    L S+    +       V  SGGVD SVVAAL+   
Sbjct: 230 STRQSLESIQPLHSENAKHASVLFSGGVDCSVVAALICEQ 269


>gi|78048824|ref|YP_364999.1| ExsB family transcriptional regulator [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|110816277|sp|Q3BQG4|QUEC_XANC5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|78037254|emb|CAJ24999.1| putative transcriptional regulator, ExsB family [Xanthomonas
          campestris pv. vesicatoria str. 85-10]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + VV +SGG+DS+ V AL +  G+ V  +
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVYAL 31


>gi|330813344|ref|YP_004357583.1| argininosuccinate synthase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486439|gb|AEA80844.1| argininosuccinate synthase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 395

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           ++V+A SGG+D+SV+   L+   Y  +VI  T  L                + + +A+R 
Sbjct: 6   KIVLAYSGGLDTSVILRWLQEK-YECEVICYTADLGQDID---------RKKIIQNAKR- 54

Query: 80  CDTINVSHYVF-DYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
              + V   +  D +E F    + P   +       Y  G +    +   R +       
Sbjct: 55  ---LGVKKIIIEDLQEIFVKDYVFPMIRANALYEGFYLLGTSIARPLIAKRQI------E 105

Query: 132 VTRQLGADVLATG 144
           + ++  A  ++ G
Sbjct: 106 IAKKYNAQAVSHG 118


>gi|255728377|ref|XP_002549114.1| GMP synthase [Candida tropicalis MYA-3404]
 gi|240133430|gb|EER32986.1| GMP synthase [Candida tropicalis MYA-3404]
          Length = 530

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 25/191 (13%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+ A+SGGVDS+V A ++K      IG             RK    + +   D     D 
Sbjct: 231 VIGAVSGGVDSTVGAKIMKEA----IGDRFHAIYVDNGVMRKNETESVKKTLD-----DG 281

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + ++  V D  E F              G T     +  R +  +  + V  +  A +  
Sbjct: 282 LGINLTVVDASELFLGR---------LKGVT---DPEKKRKIIGNTFIHVFEEEAAKIKP 329

Query: 143 TGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
                   L  G    D         P    +            +L  L  PL ++ K+ 
Sbjct: 330 HDGSEIEFLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLEDMKL-KLIEPLRELFKDE 388

Query: 200 VRDLAREMGLD 210
           VR L   +G+ 
Sbjct: 389 VRHLGELLGVP 399


>gi|229825875|ref|ZP_04451944.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC
           49176]
 gi|229789895|gb|EEP26009.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC
           49176]
          Length = 477

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 78/247 (31%), Gaps = 41/247 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAAL-LKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           ++ ++V  +SGG DS V   L LK   +  +++ V +  +  R            +D   
Sbjct: 32  ENEKIVAGVSGGADS-VCLLLVLKDILNPENIVAVHI-NHGIRGEEA-------ARDEEF 82

Query: 76  ARRVCDTINVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            +++C+  N+   +       +         S   AG            +++     + +
Sbjct: 83  VKKLCEKYNICLEIRHLSIPEYSKK---HKISEEEAGRI----------LRYEVFEEIRQ 129

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL--CDLRFPL 192
           +  AD +A  H                 + R   +           T  ++    +  PL
Sbjct: 130 EKNADKIAVAH-----NMNDTAETFLLNLSRGSGIT--------GLTGIKISNSRIIRPL 176

Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252
               ++ +  +A   G      S +  + + +      V+  ++         ++     
Sbjct: 177 IKTSRDEIEKIAEYYGEAFITDSTNNSLIYARNRIRNKVLPELSQVNEQAVRHINEAADK 236

Query: 253 LGRHNGI 259
           LG+  G 
Sbjct: 237 LGKIEGY 243


>gi|198421250|ref|XP_002128582.1| PREDICTED: similar to asparagine synthetase [Ciona intestinalis]
          Length = 564

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 18/94 (19%)

Query: 22  RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           RV   +SGG+DSS+VAA+    L+ +G           + +             D+  AR
Sbjct: 254 RVGSLLSGGLDSSLVAAITAKKLRENG-----------SKQPIQTFSIGMETSPDIVAAR 302

Query: 78  RVCDTINVSHYVFDYEERFRNAVIV---PFASSY 108
           +V + I   H+   +        I        SY
Sbjct: 303 KVAEQIESEHHEVIFSPEEGLDAIEETIYALESY 336


>gi|75675418|ref|YP_317839.1| NAD synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74420288|gb|ABA04487.1| NH(3)-dependent NAD(+) synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 583

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G + V GV L                A   + DA R+ 
Sbjct: 294 VLLGVSGGIDSALCAAIAVDALGAEQVRGVML-----------PFRFTAQVSLDDAARLA 342

Query: 81  DTINVSHYVF 90
             + + + V 
Sbjct: 343 TALGIRYDVL 352


>gi|332042746|gb|EGI78946.1| NAD+ synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 262

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 20 DMRV---VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN 56
          + +V   VV +SGG+DS+V + L    G DV+ + + ++ 
Sbjct: 20 NAKVNGFVVGISGGIDSAVTSTLCAETGLDVLCIEMPIHQ 59


>gi|170700115|ref|ZP_02891136.1| NAD+ synthetase [Burkholderia ambifaria IOP40-10]
 gi|170134983|gb|EDT03290.1| NAD+ synthetase [Burkholderia ambifaria IOP40-10]
          Length = 282

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 63/207 (30%), Gaps = 69/207 (33%)

Query: 24  VVAMSGGVDSSVV---AALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           V+ +SGGVDSS     A L        GYD   + ++L N               D  DA
Sbjct: 49  VLGISGGVDSSTAGRLAQLAVEQLRAGGYDSRFIAMRLPN-----------GVQNDEADA 97

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R                           +   A ET    V                 +
Sbjct: 98  QRA-------------------------LAFVRADETFTVDVKP-----------AADAM 121

Query: 137 GADVLATGHY----IRSRLYVGDDGKRRRIMC--------RPMDLERDQ---SYFLFATT 181
            A ++A+GH      +     G+   R R++         R + +  D    S   F T 
Sbjct: 122 LASLVASGHAFETPAQQDFVHGNIKARERMIAQYAVAGARRGIVIGTDHAAESLMGFFTK 181

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMG 208
                    PL  + K  VR +AR +G
Sbjct: 182 FGDGGADVLPLAGLSKRRVRAVARALG 208


>gi|145589933|ref|YP_001156530.1| argininosuccinate synthase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189046397|sp|A4SZQ2|ASSY_POLSQ RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|145048339|gb|ABP34966.1| argininosuccinate synthase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 410

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            + V+A SGG+D+SV+   L+   Y    VT                  G+++  AR   
Sbjct: 5   KKAVLAYSGGLDTSVILKWLQDT-YGCEIVTF-----------TADLGQGEELEPARAKA 52

Query: 81  DTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
               +     ++ D  E F    + P           Y  G +    +   R +      
Sbjct: 53  LQFGIKPENIFIDDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRQI------ 106

Query: 131 SVTRQLGADVLATG 144
            + R  GAD ++ G
Sbjct: 107 EIARLTGADAVSHG 120


>gi|58581302|ref|YP_200318.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84623226|ref|YP_450598.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|188577420|ref|YP_001914349.1| ExsB protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325929353|ref|ZP_08190483.1| transcriptional regulator;preQ(0) biosynthesis protein QueC
          [Xanthomonas perforans 91-118]
 gi|75435924|sp|Q5H288|QUEC_XANOR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|110816278|sp|Q2P553|QUEC_XANOM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764392|sp|B2STI7|QUEC_XANOP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|58425896|gb|AAW74933.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84367166|dbj|BAE68324.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|188521872|gb|ACD59817.1| ExsB protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325540265|gb|EGD11877.1| transcriptional regulator;preQ(0) biosynthesis protein QueC
          [Xanthomonas perforans 91-118]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + VV +SGG+DS+ V AL +  G+ V  +
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVYAL 31


>gi|254521815|ref|ZP_05133870.1| exsB protein [Stenotrophomonas sp. SKA14]
 gi|219719406|gb|EED37931.1| exsB protein [Stenotrophomonas sp. SKA14]
          Length = 221

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + VV +SGG+DS+ V A+ +  G+ V  +
Sbjct: 2  KKAVVLLSGGMDSAAVIAMAQEQGFAVHAL 31


>gi|197334782|ref|YP_002156773.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11]
 gi|197316272|gb|ACH65719.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11]
          Length = 456

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 19 KDMRVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
          K   ++VA+SGGVDS V+  L     K    + + V              G      D  
Sbjct: 30 KKPHLIVALSGGVDSMVLLRLAGMYAKEKQLECMAVH----------VNHGLSKHASDWE 79

Query: 75 -DARRVCDTINVSHYV 89
                C+ +++  Y+
Sbjct: 80 VSCASYCEELDIPLYI 95


>gi|167737225|ref|ZP_02409999.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 14]
          Length = 370

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 34/154 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLRLAHRYHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAEHGIRHVIYTFTKQDLLENIDDAVY-------------------YGEFFEKIDAIDSA 315

Query: 140 VLATGHYIRSR--LYVGDDGKRRRIMCRPMDLER 171
           +   G+YI ++  L V   G+    +    DL +
Sbjct: 316 IAHFGYYIANKLGLKVALCGEGSDEIFGGYDLFK 349


>gi|33862263|ref|NP_893824.1| argininosuccinate synthase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|44887704|sp|Q7UZG0|ASSY_PROMP RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|33634481|emb|CAE20166.1| Argininosuccinate synthase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 404

 Score = 41.7 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGGVD+SV    LK +           Y   +          G D+   R+  
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKNE-----------YGISEVVTFVADLGQGDDLEIVRQKA 53

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                +  V  +  + F      P   + A      P      R +   +L+++ R+L A
Sbjct: 54  LNSGATKSVIGNLVDNFVEKYAFPAIRANALYGEKYPLSTALARPLIAENLVNLARELNA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|325860304|ref|ZP_08173426.1| NAD+ synthase [Prevotella denticola CRIS 18C-A]
 gi|325482183|gb|EGC85194.1| NAD+ synthase [Prevotella denticola CRIS 18C-A]
          Length = 656

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 26/94 (27%)

Query: 22  RVVVAMSGGVDSSVVAALLK------RDGYD---VIGVTLQLYNSRKASKRKGSCCAGQD 72
           +V++ +SGG+DS    ALL       + G+D   ++GVT+            G     + 
Sbjct: 364 KVIIGISGGLDS--TLALLVAVRTFDKLGFDRKGIVGVTM-----------PGFGTTDRT 410

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFAS 106
             +A  + + + ++ +  +       +V+  F  
Sbjct: 411 YRNAMTLMENLGITIHEINIAA----SVLQHFKD 440


>gi|237837317|ref|XP_002367956.1| GMP synthase, putative [Toxoplasma gondii ME49]
 gi|211965620|gb|EEB00816.1| GMP synthase, putative [Toxoplasma gondii ME49]
 gi|221509282|gb|EEE34851.1| GMP synthase, putative [Toxoplasma gondii VEG]
          Length = 569

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 26/194 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V AAL+ +  G    GV   L ++    K +      +      +
Sbjct: 267 DAHVLGALSGGVDSTVAAALVHKAIGDRFHGV---LIDTGLLRKDEAQNTLAKL-----K 318

Query: 79  VCD-TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            C  ++++     D  E F +           AG   +   +  R +  +  +    R +
Sbjct: 319 ACFPSLSI--ECVDASEAFFSK---------LAG---VRDPEKKRKIIGNLFVDEFVRVV 364

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               + T +    +  +  D         P    +   + +    ++    +  PL ++ 
Sbjct: 365 NEKKIHTHNTFLLQGTLYPDVIESCSFKGPSHTIKTH-HNVGGLPEKMHLKVLEPLRELF 423

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 424 KDEVRALGLELGLP 437


>gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
 gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
          Length = 463

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 19/129 (14%)

Query: 20  DMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             RV++A+SGG+DS V   LL  +    +    L+L  +      +G   A +D      
Sbjct: 18  QQRVLIAVSGGIDS-VSLLLLFHQAAPQMD---LKLSVAHYNHGLRGEA-ADEDEAFVAA 72

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +   + +  Y                   +     P   ++  R +++  L  V +  GA
Sbjct: 73  LAGRLGLPCYR------------ERAPQGWWT-REPGTKMEAARRLRYDFLERVAKAAGA 119

Query: 139 DVLATGHYI 147
           D +A GH+ 
Sbjct: 120 DRIALGHHA 128


>gi|166712979|ref|ZP_02244186.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
           + VV +SGG+DS+ V AL +  G+ V  +
Sbjct: 2  KKAVVLLSGGMDSAAVIALAQEQGFAVYAL 31


>gi|25147560|ref|NP_741865.1| hypothetical protein M02D8.4 [Caenorhabditis elegans]
 gi|25112585|gb|AAN72427.1| Asparagine synthetase protein 2, isoform b, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 465

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 16/90 (17%)

Query: 19  KDMRVVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D  + V +SGG+DSS    + +  +KR G       + ++     S   G      DV 
Sbjct: 228 SDAPIGVLLSGGLDSSLVSSIASREMKRRG-------MAVH-----SFSIGVDHNSPDVV 275

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPF 104
            AR+V   I  +H+ F +        +  F
Sbjct: 276 AARKVAKFIGTTHHEFYFSIEVSRTCVSLF 305


>gi|260431460|ref|ZP_05785431.1| glutamine-dependent NAD(+) synthetase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415288|gb|EEX08547.1| glutamine-dependent NAD(+) synthetase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 570

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + ++ +SGGVDS++VA +     G + +   +                +   + DA  V 
Sbjct: 304 KALLGLSGGVDSALVATIAVDALGAENVRCVM----------LPSEYTSAASLEDAEAVA 353

Query: 81  DTINVSHYVFDYEE 94
             + V +      +
Sbjct: 354 KALGVQYDYVPISQ 367


>gi|157373011|ref|YP_001481000.1| argininosuccinate synthase [Serratia proteamaculans 568]
 gi|166989397|sp|A8GL82|ASSY_SERP5 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|157324775|gb|ABV43872.1| Argininosuccinate synthase [Serratia proteamaculans 568]
          Length = 406

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK +  G +V+     +   R   +        + +     
Sbjct: 7   KKIVLAYSGGLDTSAIIPWLKENYGGCEVVAFVADIGQERSDLEG----VEQKALQSGAS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            C       +V D  E F    + P          SY  G +    +     V       
Sbjct: 63  EC-------HVVDLREEFIRDYVYPVLQTGALYEGSYLLGTSMARPIIAKAQV------E 109

Query: 132 VTRQLGADVLATG 144
           +  ++GAD +  G
Sbjct: 110 LALKVGADAVCHG 122


>gi|220903573|ref|YP_002478885.1| thiamine biosynthesis protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867872|gb|ACL48207.1| thiamine biosynthesis protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 376

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 49/148 (33%), Gaps = 24/148 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           ++   SGG+DS + A +L+R G  V  +          +   GS  A    +        
Sbjct: 6   IIALFSGGLDSILAAKVLERQGLAVRCLHF-------ITPFFGSAKAVPYWH------KV 52

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----GA 138
             +     D  E F   +       +  G+   PCVDC        LL   R+     GA
Sbjct: 53  YGLDIVSRDVSEAFATMLRQR--PEHGFGKVMNPCVDCKI-----LLLREARKYMESVGA 105

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRP 166
             LATG  +  R           IM   
Sbjct: 106 AGLATGEVLGQRPMSQRRDTLHLIMRDA 133


>gi|195120392|ref|XP_002004711.1| GI19452 [Drosophila mojavensis]
 gi|226711419|sp|B4KLL0|CTU1_DROMO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|193909779|gb|EDW08646.1| GI19452 [Drosophila mojavensis]
          Length = 343

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  +V VA SGG DS+V+A +LK    R  Y   G+ L L +  +      +      + 
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLKLLNERHNY---GLDLVLLSIDEG----ITGYRDDSLE 101

Query: 75  DARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
             ++  D   +   +  YEE +    + ++         G +   C  C    +   L  
Sbjct: 102 TVKQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDR 153

Query: 132 VTRQLGADVLATGHYI 147
             + LG D +ATGH  
Sbjct: 154 GAKLLGVDSIATGHNA 169


>gi|229844086|ref|ZP_04464227.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 6P18H1]
 gi|229813080|gb|EEP48768.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae 6P18H1]
          Length = 485

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 33/186 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       V+         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGVVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
           TG  +      G    +     R +D   D               +  PL    KE +  
Sbjct: 286 TGEAL------GQVSSQTLTNLRLIDEAAD-------------ALVLRPLITHDKEQIIA 326

Query: 203 LAREMG 208
           +A+++G
Sbjct: 327 MAKDIG 332


>gi|269213487|ref|ZP_05982072.2| NAD+ synthetase [Neisseria cinerea ATCC 14685]
 gi|269146233|gb|EEZ72651.1| NAD+ synthetase [Neisseria cinerea ATCC 14685]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGVHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|255282422|ref|ZP_05346977.1| argininosuccinate synthase [Bryantella formatexigens DSM 14469]
 gi|255267006|gb|EET60211.1| argininosuccinate synthase [Bryantella formatexigens DSM 14469]
          Length = 409

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK    Y+VI   +             +C  G ++     
Sbjct: 4   KVILAYSGGLD--TTALIPWLKETFDYEVICCCI-------------NCGQGNELDGLEE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     Y+ D  + F +  I+P           Y  G +    V   R      L+
Sbjct: 49  RAKLSGASKLYIEDIIDEFCDDFIMPCVKAGAVYEHKYLLGTSMARPVIAKR------LV 102

Query: 131 SVTRQLGADVLATG 144
            + R+ GA  +  G
Sbjct: 103 EIARKEGATTICHG 116


>gi|167764470|ref|ZP_02436591.1| hypothetical protein BACSTE_02854 [Bacteroides stercoris ATCC
           43183]
 gi|167697139|gb|EDS13718.1| hypothetical protein BACSTE_02854 [Bacteroides stercoris ATCC
           43183]
          Length = 569

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 44/213 (20%)

Query: 25  VAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYD 75
           V +SGG+DSSV++A+ K+  G        +   +   +                  D+  
Sbjct: 245 VLLSGGLDSSVISAIAKKYAG--------KRIETDNKADAWWPQLHSFAVGLKGAPDLIK 296

Query: 76  ARRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTV 124
           AR V   I   H+  +Y  +        VI  F  +Y        TP+     V  +  +
Sbjct: 297 AREVAQYIGTIHHEINYTIQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGI 355

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA----- 179
           K         ++    L        + +  +  ++   +     L  ++S   +      
Sbjct: 356 KMVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLYLYDCLRANKSLAAWGVEGRV 415

Query: 180 --TTQQQLCDL--------RFPLGDMKKESVRD 202
               ++ L             P  +++K+ VR+
Sbjct: 416 PFLDKEFLDVAMRLNPATKMCPGKEIEKKVVRE 448


>gi|15789499|ref|NP_279323.1| hypothetical protein VNG0190C [Halobacterium sp. NRC-1]
 gi|169235215|ref|YP_001688415.1| hypothetical protein OE1318F [Halobacterium salinarum R1]
 gi|10579837|gb|AAG18803.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726281|emb|CAP13062.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 320

 Score = 41.7 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 78/222 (35%), Gaps = 44/222 (19%)

Query: 10  NSLDLDKNPKDMRV-VVAMSGGVDSSVVAAL--LKRDGY------DVIGVTLQLYNSRKA 60
           N L  D  P D    V+ +SGG DS+V   L  L  + +      ++I +T+        
Sbjct: 42  NMLSPDTTPDDPETWVIGLSGGKDSAV---LTDLIEETFRDDPRVELIALTIH------- 91

Query: 61  SKRKGSCCAGQDVYDA-RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
              +G      +  DA   +    ++ H +  Y E F  A       +        PC  
Sbjct: 92  ---EGIAGYRDESLDACTTLAADRDIRHELVTYREEFDVA---MDDVADDDPLDMAPCAY 145

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ--SYFL 177
           C    +   L     +  AD L TGH +        D +    +   ++    Q  ++F 
Sbjct: 146 CGVFRR-DLLAKYADEYDADKLLTGHNL--------DDEAETALMNILEGNVTQIATHFD 196

Query: 178 FAT----TQQQLCDLR---FPLGDMKKESVRDLAREMGLDIA 212
            +      + +L  +     PL D+ ++ V   A+   L + 
Sbjct: 197 ASLGSFDDRAELDAMIPRAKPLRDIPEKEVALYAQLRDLPVH 238


>gi|221488793|gb|EEE27007.1| GMP synthase, putative [Toxoplasma gondii GT1]
          Length = 569

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 26/194 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V AAL+ +  G    GV   L ++    K +      +      +
Sbjct: 267 DAHVLGALSGGVDSTVAAALVHKAIGDRFHGV---LIDTGLLRKDEAQNTLAKL-----K 318

Query: 79  VCD-TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136
            C  ++++     D  E F +           AG   +   +  R +  +  +    R +
Sbjct: 319 ACFPSLSI--ECVDASEAFFSK---------LAG---VRDPEKKRKIIGNLFVDEFVRVV 364

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196
               + T +    +  +  D         P    +   + +    ++    +  PL ++ 
Sbjct: 365 NEKKIHTHNTFLLQGTLYPDVIESCSFKGPSHTIKTH-HNVGGLPEKMHLKVLEPLRELF 423

Query: 197 KESVRDLAREMGLD 210
           K+ VR L  E+GL 
Sbjct: 424 KDEVRALGLELGLP 437


>gi|83589417|ref|YP_429426.1| NH(3)-dependent NAD(+) synthetase [Moorella thermoacetica ATCC
           39073]
 gi|83572331|gb|ABC18883.1| NH(3)-dependent NAD(+) synthetase [Moorella thermoacetica ATCC
           39073]
          Length = 577

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + +V +SGG+DSSV AAL     G + V+GV +                +     DAR++
Sbjct: 324 KALVGLSGGIDSSVTAALAAAAMGPENVLGVAM-----------PSRYSSPGSRSDARKL 372

Query: 80  CDTINVSHYVFDYEERFR 97
              + ++      E  F+
Sbjct: 373 AANLGIAFREIPIEGMFK 390


>gi|253990910|ref|YP_003042266.1| thiamine biosynthesis protein ThiI [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782360|emb|CAQ85524.1| Thiamine biosynthesis protein thiI [Photorhabdus asymbiotica]
          Length = 482

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 39/189 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     ++   G           ++V   
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNL---GGSAHEIG----------VKQVAHY 226

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +       +   +       V+         G+  +      + +       V  + G  
Sbjct: 227 LWNRFGSSHKVRFVAVDFEPVVAEILEKVDDGQMGVVL----KRMMVRAASKVAERYGVQ 282

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TG  +      G    +     R +D   D               +  PL    KE 
Sbjct: 283 AIVTGEAL------GQVSSQTLTNLRLIDNASD-------------TLILRPLISHDKEH 323

Query: 200 VRDLAREMG 208
           +  LARE+G
Sbjct: 324 IIRLAREIG 332


>gi|221635827|ref|YP_002523703.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermomicrobium roseum DSM 5159]
 gi|221157653|gb|ACM06771.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermomicrobium roseum DSM 5159]
          Length = 407

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
           RVV  +SGG DS V A  L + G  V  V   
Sbjct: 182 RVVALLSGGFDSPVAAYRLMKRGCFVTFVHFH 213


>gi|297618558|ref|YP_003706663.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           voltae A3]
 gi|297618618|ref|YP_003706723.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           voltae A3]
 gi|297377535|gb|ADI35690.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           voltae A3]
 gi|297377595|gb|ADI35750.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanococcus
           voltae A3]
          Length = 429

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 48/210 (22%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V  S G+DS V A ++ + G  ++ + ++                       +++
Sbjct: 230 QGKVLVLTSDGIDSPVSAFMMAKRGCKLVLLHMKTSEEGAEK--------------VQKL 275

Query: 80  CDTIN-----VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV-KFSDLLSVT 133
            + +      + +   D++E  +   I    +     +    C+ C R + K ++     
Sbjct: 276 VNVLKDYDPSLKYVEVDFKETLQG--IKDDLTVLKKEK--YTCIFCKRRMLKIAE--RFA 329

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            +   D +  G        +G    +     R           +   T  Q+     PL 
Sbjct: 330 YKYKCDAIING------DNMGQVASQTLKNLR----------VISNCTNLQVLR---PLI 370

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDI-CF 222
              K  +  LA ++G      S S+++ CF
Sbjct: 371 GFDKVEIMRLAEKIG--TLQISISKELHCF 398


>gi|73947791|ref|XP_541458.2| PREDICTED: hypothetical protein XP_541458 [Canis familiaris]
          Length = 504

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +GV+L+L     A            +   RR    
Sbjct: 215 VAVGASGGKDSTVLAHVLRELAPR-LGVSLRL----VAVDEGIGGYRDAALAAVRRQAAL 269

Query: 83  INVSHYVFDYEERF----RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
            ++   V  Y + F     +AV     S+  +G +   C  C   ++   L    R +GA
Sbjct: 270 WDLPLTVVAYADLFGGWTMDAVAR---STAGSGRSRACCTFCG-VLRRRALEEGARLVGA 325

Query: 139 DVLATGHY 146
             + TG +
Sbjct: 326 THIVTGEH 333


>gi|33241048|ref|NP_875990.1| NAD synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33238577|gb|AAQ00643.1| NAD synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 564

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA +     G + V G+ +                +   + DA  + 
Sbjct: 299 VLLGLSGGIDSALVAIIACAALGAEKVSGILM-----------PSPWSSEGSIIDANNLA 347

Query: 81  DTINVS 86
             + + 
Sbjct: 348 KRLGIK 353


>gi|329957958|ref|ZP_08298390.1| asparagine synthase [Bacteroides clarus YIT 12056]
 gi|328522107|gb|EGF49223.1| asparagine synthase [Bacteroides clarus YIT 12056]
          Length = 569

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 44/213 (20%)

Query: 25  VAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYD 75
           V +SGG+DSSV++A+ K+  G        +   +   +                  D+  
Sbjct: 245 VLLSGGLDSSVISAIAKKYAG--------KRIETDNKADAWWPQLHSFAVGLKGAPDLIK 296

Query: 76  ARRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTV 124
           AR V   I   H+  +Y  +        VI  F  +Y        TP+     V  +  +
Sbjct: 297 AREVAQYIGTIHHEINYTIQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGI 355

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA----- 179
           K         ++    L        + +  +  ++   +     L  ++S   +      
Sbjct: 356 KMVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLYLYDCLRANKSLAAWGVEGRV 415

Query: 180 --TTQQQLCDL--------RFPLGDMKKESVRD 202
               ++ L             P  +++K+ VR+
Sbjct: 416 PFLDKEFLDVAMRLNPATKMCPGKEIEKKVVRE 448


>gi|307111290|gb|EFN59525.1| hypothetical protein CHLNCDRAFT_138178 [Chlorella variabilis]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +  V +SGG+DSS+ A L    G DV+G+T        A+    +     D   A  V
Sbjct: 167 GKKACVLLSGGLDSSIAACL----GKDVLGLT--------AAFTVVASDVSTDREHAVVV 214

Query: 80  CDTINVSHYVFDYEER 95
             T  + H++ D    
Sbjct: 215 ARTSALQHHLIDISLE 230


>gi|225571157|ref|ZP_03780155.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM
           15053]
 gi|225159988|gb|EEG72607.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM
           15053]
          Length = 477

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 19  KDMRVVVAMSGGVDS---SVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           +  RV+  +SGG DS     V   LK++ G+ V  V               +  A +D  
Sbjct: 38  QSDRVIAGVSGGADSICLLFVLLELKKEIGFSVTAVH--------VHHGLRAETADRDAQ 89

Query: 75  DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
              ++C    V   V      +   V         A E  L   +  R V+ +    V R
Sbjct: 90  YVEKICREQKVELLV------YHEDVKTY------AAEHKLTVEEAGREVRRAAFKEVLR 137

Query: 135 QLGADVLATGHY 146
           +     +A  H+
Sbjct: 138 KKQGTKIALAHH 149


>gi|167395467|ref|XP_001741539.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893874|gb|EDR21992.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 252

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 25/151 (16%)

Query: 2   VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALL------KRDGYDVIGVTLQLY 55
           V S+  ++N  +   +P D R+++  SGG DS ++  +L           DV+ V +   
Sbjct: 19  VYSKFWKMNGREKIISPHD-RIIIGFSGGKDSFLLVHVLSTLSKNVNFPIDVVAVHVTN- 76

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
                           D+  ++ +C++  V              +            T  
Sbjct: 77  ---------PQVGYQLDLEQSKTICESFGVPFISLQ-----SEQMPESDIEDADKSTTF- 121

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            C++C +  +   LL   ++ G   +A GH+
Sbjct: 122 -CLNCGKNRR-RALLKFAKENGFTSIALGHH 150


>gi|163754832|ref|ZP_02161953.1| argininosuccinate synthetase [Kordia algicida OT-1]
 gi|161324899|gb|EDP96227.1| argininosuccinate synthetase [Kordia algicida OT-1]
          Length = 398

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
           K PK  ++V+A SGG+D+S  A  L K   ++V  V                    +++ 
Sbjct: 2   KTPK--KLVLAYSGGLDTSYCAVHLSKDLHFEVHAV-----------SINTGGFTQKEIK 48

Query: 75  DARRVCDTINVSHYV-FDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSV 132
                   + VS Y   D    F   V+              P  V   R V+  +++  
Sbjct: 49  KIEENAYKMGVSTYKNIDAVSTFYKKVVKYLIFGNVLKNNTYPLSVSAERIVQAIEIIEY 108

Query: 133 TRQLGADVLATG 144
           T+ + A  +A G
Sbjct: 109 TKSINAQYIAHG 120


>gi|325142528|gb|EGC64928.1| NAD+ synthetase [Neisseria meningitidis 961-5945]
 gi|325198508|gb|ADY93964.1| NAD+ synthetase [Neisseria meningitidis G2136]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGVHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|320539255|ref|ZP_08038925.1| putative NAD+ synthetase [Serratia symbiotica str. Tucson]
 gi|320030647|gb|EFW12656.1| putative NAD+ synthetase [Serratia symbiotica str. Tucson]
          Length = 540

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDSVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + V   +   E  F
Sbjct: 333 ILGVEFDIVSIEPMF 347


>gi|297181711|gb|ADI17893.1| thiamine biosynthesis ATP pyrophosphatase [uncultured Chloroflexi
           bacterium HF0200_06I16]
          Length = 397

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 40/200 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V V +SGG+DS V A  + + G   + V    Y     +           +  A  + D
Sbjct: 179 KVAVMLSGGIDSPVAAWQMMKRGCQAMFVHFHSYPLVDRTS----------MEKAVDLVD 228

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-----SVTRQL 136
            +N          ++ + + +            L C    R V +   +     ++ ++ 
Sbjct: 229 HLN--------RHQYESNLFMVPLGEIQKQII-LSCPPSYRVVLYRRFMVRITEALAKRN 279

Query: 137 GADVLATGHYIRS------RLYVGDDGKRRRIMCRP---------MDLERDQSYFLFATT 181
            A  + TG                 D      + RP         +D+ +D   F  +  
Sbjct: 280 RAKAIVTGESCGQVASQTLENIAVVDNAAGMPILRPLIGNNKEEIVDMSQDIGTFSTSIL 339

Query: 182 QQQLCDLRF-PLGDMKKESV 200
             Q C   F P     K  +
Sbjct: 340 PDQDCCTLFVPKHPETKADI 359


>gi|239907289|ref|YP_002954030.1| argininosuccinate synthase [Desulfovibrio magneticus RS-1]
 gi|239797155|dbj|BAH76144.1| argininosuccinate synthase [Desulfovibrio magneticus RS-1]
          Length = 397

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV+   +K+  Y  +VI VT  L    +    +           A +
Sbjct: 5   KKVVLAYSGGLDTSVILKWIKKT-YNCEVITVTCDLGQEEELDGLEEKALTTG----ATK 59

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLS 131
                    Y+ D  E F    I P   +       Y  G +    +   R      L+ 
Sbjct: 60  A--------YIDDLREEFAKDFIFPMLRAGAIYEGRYLLGTSIARPLIAKR------LVD 105

Query: 132 VTRQLGADVLATG 144
           V R  GA  +A G
Sbjct: 106 VARAEGAQAVAHG 118


>gi|88707054|ref|ZP_01104750.1| glutamine-dependent NAD+ synthetase [Congregibacter litoralis KT71]
 gi|88698704|gb|EAQ95827.1| glutamine-dependent NAD+ synthetase [Congregibacter litoralis KT71]
          Length = 540

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGGVDS++  A+     G   V  V +                +   + DA    
Sbjct: 284 VVLGLSGGVDSALTLAVAVDALGASRVEAVMM-----------PFRYTSDISIADAAEQS 332

Query: 81  DTINVSHYVFDYEERFR 97
            T+ V H V   E  + 
Sbjct: 333 ATLGVRHSVISIEPIYE 349


>gi|322392674|ref|ZP_08066134.1| transcription regulator ExsB [Streptococcus peroris ATCC 700780]
 gi|321144666|gb|EFX40067.1| transcription regulator ExsB [Streptococcus peroris ATCC 700780]
          Length = 217

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K+    V  VT             G     + +  A+ + +  
Sbjct: 7   LVVFSGGQDSTTCLFWAKQHYERVEAVTFA----------YGQRHHLE-IQVAKEIAEEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q G 
Sbjct: 56  GIHHHILDMSLLGQITENALTSDLEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRGI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 TDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
               LA ++G
Sbjct: 164 ETWALADQLG 173


>gi|298492860|ref|YP_003723037.1| exsB protein ['Nostoc azollae' 0708]
 gi|298234778|gb|ADI65914.1| exsB protein ['Nostoc azollae' 0708]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 34/204 (16%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           M+ V+ +SGG+DSS V    + DG +   +         +   +   C    +  A  V 
Sbjct: 1   MKAVILLSGGLDSSTVLYQARADGCECYAI---------SFDYQQQHCRE--LQSAVLVG 49

Query: 81  DTIN-VSHYVFDYEERFR-------NAVIVP---FASSYAAGETPLPCVDCNRTVKFSDL 129
            ++  V H V +++ R         +A+ +P         +   P+  V    T+  S  
Sbjct: 50  KSVGVVQHQVVNFDLRLWGGSALTDDAIALPQARSLDE-MSQNIPVTYVPARNTIFLSFA 108

Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ---QQLC 186
           L     + A+ +  G          D        CRP  ++  Q  F   T Q    Q  
Sbjct: 109 LGYAEVIAAERVYIGVNALDYSGYPD--------CRPDYIQAMQEVFRLGTKQGREGQPI 160

Query: 187 DLRFPLGDMKKESVRDLAREMGLD 210
           ++  PL ++KK  +  L  ++G+ 
Sbjct: 161 NIIAPLVNLKKTEIIQLGNQLGVP 184


>gi|268608009|ref|ZP_06141740.1| asparagine synthetase (glutamine-hydrolyzing) [Ruminococcus
           flavefaciens FD-1]
          Length = 539

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 41/162 (25%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD----ARRVCDT 82
           +SGGVDSS V A+                     +KR  SC   ++ +D    A +  + 
Sbjct: 196 LSGGVDSSYVLAM-------------------SDAKRADSCGYDEERFDESRVAAKTAEL 236

Query: 83  INVSHYVFDYE-ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
           +NV H V + + E+F   V               P V  N      D  ++   LG +  
Sbjct: 237 LNVEHSVANIQPEQFFEVV---------------PYVMYNMEQPLGDASAIVFTLGCNAT 281

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ--SYFLFATT 181
           A    +       D+      M R  +   D   ++++  T 
Sbjct: 282 AEHTKLCYSGEGADEFFGGYNMYRNAERYGDNLKTFYVGNTN 323


>gi|240850328|ref|YP_002971721.1| NH3-dependent NAD synthetase [Bartonella grahamii as4aup]
 gi|240267451|gb|ACS51039.1| NH3-dependent NAD synthetase [Bartonella grahamii as4aup]
          Length = 558

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGGVDS++ AA+     G + V  + +                + + + DA+   
Sbjct: 293 VILGLSGGVDSALCAAMAVDALGSERVRTIMM-----------PYHYTSQESLKDAKECA 341

Query: 81  DTINVSHYVFDYEE 94
             +   + +   E+
Sbjct: 342 QLLGCHYEIIPIEQ 355


>gi|227872480|ref|ZP_03990820.1| NAD(+) synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841681|gb|EEJ51971.1| NAD(+) synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
          Length = 656

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 60/204 (29%)

Query: 21  MRVVVAMSGGVDSSVVA-------ALLKRDGYD---VIGVTLQLYNSRKASKRKGSCCAG 70
            ++++ +SGG+DS++         ALL   GYD   ++ +T+                + 
Sbjct: 349 KKLILGLSGGLDSTLALFVCLETFALL---GYDKENILCITM-----------PSFGTSK 394

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS--D 128
           +    A ++   + +S      E+    AV+  F      GE     V  N   +     
Sbjct: 395 KTHDSAEKLAKALGISLREISIEK----AVLQHFFDIGHDGEKKDI-VYENAQARERTQI 449

Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188
           L+ +  + GA ++ TG      L           M              +          
Sbjct: 450 LMDLANKEGALLVGTGDLSELALGFATYNGDHMSM--------------YGVN------- 488

Query: 189 RFPLGDMKKESV----RDLAREMG 208
               GD+ K ++    R+ AR+ G
Sbjct: 489 ----GDIPKTAIPMLLREFARKSG 508


>gi|110667081|ref|YP_656892.1| hypothetical protein HQ1106A [Haloquadratum walsbyi DSM 16790]
 gi|109624828|emb|CAJ51236.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 201

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 22/121 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            V  SGG DSS+ A LL    YD   + L            GS     D   A    D +
Sbjct: 4   AVLYSGGKDSSLAALLL-EKFYD---IHL----------ITGSFGITDDWQHAAVAADQL 49

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
             S    + ++    A +         G         +        L +  QL    +A 
Sbjct: 50  GYSFETIELDQDVAEAAVTTMIED---GYPRNGIQRVHEHA-----LEMAAQLDVTAIAD 101

Query: 144 G 144
           G
Sbjct: 102 G 102


>gi|167038114|ref|YP_001665692.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039174|ref|YP_001662159.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermoanaerobacter sp. X514]
 gi|256750854|ref|ZP_05491738.1| GMP synthase, large subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913231|ref|ZP_07130548.1| GMP synthase, large subunit [Thermoanaerobacter sp. X561]
 gi|307723755|ref|YP_003903506.1| GMP synthase large subunit [Thermoanaerobacter sp. X513]
 gi|320116520|ref|YP_004186679.1| GMP synthase large subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853414|gb|ABY91823.1| GMP synthase, large subunit [Thermoanaerobacter sp. X514]
 gi|166856948|gb|ABY95356.1| GMP synthase, large subunit [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750189|gb|EEU63209.1| GMP synthase, large subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889916|gb|EFK85061.1| GMP synthase, large subunit [Thermoanaerobacter sp. X561]
 gi|307580816|gb|ADN54215.1| GMP synthase, large subunit [Thermoanaerobacter sp. X513]
 gi|319929611|gb|ADV80296.1| GMP synthase, large subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 512

 Score = 41.7 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 30/193 (15%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
             + V A+SGGVDSSV A L+ R  +D ++ +     ++    K +G             
Sbjct: 217 KHKAVCALSGGVDSSVAAVLVDRAIHDQLVCIF---VDTGLLRKNEGDMVIETFR----- 268

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137
                +++    D ++RF + +                 +  N  +          ++G 
Sbjct: 269 --KNYDMNIIRVDAKDRFLSRLKGVTDPEEKRK------IIGNVFI--EVFKEEALKIGD 318

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
              L  G        V + G       +           +    +    +L  PL  + K
Sbjct: 319 VKFLVQG---TLYPDVIESGNGVSSTIKSHHN-------VGGLPEDIGFELIEPLRMLFK 368

Query: 198 ESVRDLAREMGLD 210
           + VR + +E+G+ 
Sbjct: 369 DEVRQVGKELGIP 381


>gi|257486728|ref|ZP_05640769.1| ExsB family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010197|gb|EGH90253.1| ExsB family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 201

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+  + +SGG+DS  VA        +V G+TL            G   A  ++  ++ +C
Sbjct: 1  MKRALLLSGGMDSLAVAWW---QRPEV-GITL----------NYGQLAAEAEIAASKTIC 46

Query: 81 DTINVSHYVF 90
          + + + H+V 
Sbjct: 47 EQLQIEHHVI 56


>gi|239907698|ref|YP_002954439.1| hypothetical protein DMR_30620 [Desulfovibrio magneticus RS-1]
 gi|239797564|dbj|BAH76553.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 308

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +D +V+VA+SGG DS  +  +L   G+ V G  V L + +S      +            
Sbjct: 46  RDEKVLVAVSGGKDSLALMRVLTDLGHVVEGLHVHLGIPDSSDPVAERT----------- 94

Query: 77  RRVCDTINVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
           R  C    ++ +V         AV  +              P       +K         
Sbjct: 95  RAFCAASGLTLHVLH-TAEHGLAVPDVKDAVRR--------PVCAVCGKIKRHYFNRFAY 145

Query: 135 QLGADVLATGHYI 147
           + G   LATGH +
Sbjct: 146 ENGFAALATGHNL 158


>gi|212540204|ref|XP_002150257.1| PP-loop ATPase superfamily protein, putative [Penicillium marneffei
           ATCC 18224]
 gi|210067556|gb|EEA21648.1| PP-loop ATPase superfamily protein, putative [Penicillium marneffei
           ATCC 18224]
          Length = 419

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +  R+ +  SGG DS+V+A+++K   + YD  G+ L L +  +  K          +  
Sbjct: 49  KRGERIAIGASGGKDSTVLASVMKTLNERYD-YGLNLVLLSIDEGIKGY----RDDSLET 103

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            +R  +   +   +  Y+E +    + V+         G+    C  C    +   L   
Sbjct: 104 VKRNAEQYEMPLEIVGYDELYGWTMDQVVA------QVGKKGN-CTYCGVFRR-QALDRG 155

Query: 133 TRQLGADVLATGHYI 147
             +LG   + TGH  
Sbjct: 156 AARLGIKHIVTGHNA 170


>gi|92119082|ref|YP_578811.1| argininosuccinate synthase [Nitrobacter hamburgensis X14]
 gi|119361296|sp|Q1QHE6|ASSY_NITHX RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|91801976|gb|ABE64351.1| argininosuccinate synthase [Nitrobacter hamburgensis X14]
          Length = 409

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 30/139 (21%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           + K  +VV+A SGG+D+S++   L+   G +V+  T                  G+++  
Sbjct: 2   SKKVEKVVLAYSGGLDTSIILKWLQTTYGAEVVTFT-------------ADLGQGEELEP 48

Query: 76  ARRVCDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVK 125
           AR+    + +     ++ D  E F    + P           Y  G +    +   + + 
Sbjct: 49  ARQKALLLGIKPENIFIEDLREEFVRDYVFPMFRANAVYEGQYLLGTSIARPLIAKKQI- 107

Query: 126 FSDLLSVTRQLGADVLATG 144
                 +  ++GAD ++ G
Sbjct: 108 -----EIAEKVGADAVSHG 121


>gi|330504149|ref|YP_004381018.1| asparagine synthase [Pseudomonas mendocina NK-01]
 gi|328918435|gb|AEB59266.1| asparagine synthase [Pseudomonas mendocina NK-01]
          Length = 589

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC-- 80
           V V +SGGVDSS++  LL+  G + + +T  +       +R G      D+  A+R    
Sbjct: 263 VGVLLSGGVDSSMLVGLLREAGVENL-LTFSIGFQDAGGER-GDEFQYSDLI-AQRFATR 319

Query: 81  -DTINV-SHYVFD-----YEERFRNAVIVPFASSYAAGE 112
              + +  H + D     +       V     + Y    
Sbjct: 320 HHQLRIGEHEILDQLPQAFRAMSEPMVSHDCIAFYLLSR 358


>gi|312876054|ref|ZP_07736043.1| argininosuccinate synthase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797252|gb|EFR13592.1| argininosuccinate synthase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 403

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++A SGG+D+SV+   LK +   +VI V + +         K           A +V 
Sbjct: 5   KVILAYSGGLDTSVIIPWLKENFDCEVIAVVVDVGQEDDFEAIKERAYKTG----ASKV- 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E F N  I P           Y  G +        R +    L+++ 
Sbjct: 60  -------YIEDAKEEFVNEYIFPTLKAGAIYEGKYLLGTSMA------RPLIAKKLVNIA 106

Query: 134 RQLGADVLATG 144
           ++  AD +A G
Sbjct: 107 KKENADAIAHG 117


>gi|312136135|ref|YP_004003473.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis
           OL]
 gi|311776186|gb|ADQ05673.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL]
          Length = 235

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 32/143 (22%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAALL--------KRDGYDVIGVTLQLYNSRKASKRK 64
           D +      ++ V +S G DS  +   L        K+  +DV+ +T+ +          
Sbjct: 14  DFNMIEDRDKIAVGVSAGKDSLTMLYTLSFMRRFYPKK--FDVVAITVDMGFEGM----- 66

Query: 65  GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124
                  D    +  CD I+V  ++     + +  V               PC  C   +
Sbjct: 67  -------DFLPIKEFCDKIDVEFHLVP--SQIKQIVFDIRKEE-------NPCSLC-ANL 109

Query: 125 KFSDLLSVTRQLGADVLATGHYI 147
           +   L S  + LG + +A GH++
Sbjct: 110 RRGILNSTAKSLGCNKVALGHHL 132


>gi|224372716|ref|YP_002607088.1| asparagine synthase (glutamine-hydrolyzing) [Nautilia profundicola
           AmH]
 gi|223588628|gb|ACM92364.1| asparagine synthase (glutamine-hydrolyzing) [Nautilia profundicola
           AmH]
          Length = 566

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 25/111 (22%)

Query: 26  AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85
            +SGGVDSS++AA++ + G             +  S          +   AR   + I  
Sbjct: 236 LLSGGVDSSLIAAMMSKYG-----------KIKTFSIGYDGYENYDERRYARLTAEHIGS 284

Query: 86  SHYVFDYE-----ERFRNAVI---------VPFASSYAAGETPLPCVDCNR 122
            HY  +Y      + F N +            F ++Y A   PL  V    
Sbjct: 285 EHYEINYSKKIFFDEFENVLFAMDEPVADSSFFPANYLAKNIPLKVVLSGE 335


>gi|70728575|ref|YP_258324.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5]
 gi|68342874|gb|AAY90480.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5]
          Length = 438

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 72/223 (32%), Gaps = 40/223 (17%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M    A  L+SL   ++ +  RV  A SGG+DS+V+  LL   G   +    +L      
Sbjct: 1   MNALSAKLLHSLAPWRDSRSWRV--AFSGGLDSTVLLHLL--AG---LAQHHRLPPLSAV 53

Query: 61  SKRKGSCCAGQDV-YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119
               G   A        +  CD + V   V          V VP  +S            
Sbjct: 54  HIHHGLQAAADAWPEHCQAFCDALGVPLQVL--------RVQVPAGASLERAA------- 98

Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLF 178
             R  ++           A + A+G  + +  +  D  +     + R     R  S    
Sbjct: 99  --REARYGAF--------ARLTASGEVLLTAQHRDDQAETLLFRLLRGAG-VRGLSAMPS 147

Query: 179 A--TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQD 219
                  QL     PL D+ +  ++  A E  L   +   + D
Sbjct: 148 ERPLGDGQLLR---PLLDVSRAELQCYAAEHQLSWVEDPSNAD 187


>gi|270293085|ref|ZP_06199296.1| ExsB protein [Streptococcus sp. M143]
 gi|270279064|gb|EFA24910.1| ExsB protein [Streptococcus sp. M143]
          Length = 217

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 28/190 (14%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V  SGG DS+      K     V  VT             G     + +  AR +    
Sbjct: 7   LVVFSGGQDSTTCLFWAKEHYKTVEAVTFA----------YGQRHHLE-IQVAREIAKEQ 55

Query: 84  NVSHYVFDYE---ERFRNAVIVPFASSYAAGETPLP--CVDCNRTVKFSDLLSVTRQLGA 138
            + H++ D     +   NA+          GE P        +  + F+ +L   +Q   
Sbjct: 56  GIRHHILDMSLLGQITENALTSDMEIEQKEGEVPNTFVDGRNHLFLSFAAVL--AKQRDI 113

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             + TG           D       CR + ++        A     +     PL  + K 
Sbjct: 114 KDIVTG-------VCETDFSGYPD-CRDVFVKSLNVTLNLAMDYDFVIQT--PLMWLDKA 163

Query: 199 SVRDLAREMG 208
              +LA ++G
Sbjct: 164 ETWELADQLG 173


>gi|297570306|ref|YP_003691650.1| exsB protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926221|gb|ADH87031.1| exsB protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 258

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
          K    VV +SGG+DS+ V AL K  GY    ++ +
Sbjct: 14 KGQPAVVLLSGGLDSTTVLALAKAAGYRCHCLSFR 48


>gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 470

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 68/208 (32%), Gaps = 43/208 (20%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            M V+V +SGG DS  VA L     L+     V+G+++ + +    + R     A  D  
Sbjct: 20  GMGVLVGVSGGPDS--VALLDVLYGLRA----VLGISITVAH---LNHRLRGAEAEADAR 70

Query: 75  DARRVCDTINVSHYVFDY-EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
             R++ +   +   V +     FR        +   + +T        R +++       
Sbjct: 71  YVRKLAEKFGLPCIVEECDVPTFRK-------AERLSIQTAA------RELRYEFFARAA 117

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF--P 191
           R+ GA  +A GH+   +              R                        F  P
Sbjct: 118 RETGARRVALGHHADDQAE-----TILHHFLRGTGP--------AGLAGIAPVRGLFIRP 164

Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQD 219
           L  +++  +    R  GLD      + D
Sbjct: 165 LLGIRRREIEAYCRARGLDPRLDPSNLD 192


>gi|187925700|ref|YP_001897342.1| PP-loop domain protein [Burkholderia phytofirmans PsJN]
 gi|205830571|sp|B2T6U6|TTCA_BURPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|187716894|gb|ACD18118.1| PP-loop domain protein [Burkholderia phytofirmans PsJN]
          Length = 336

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRD---GYDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS          L+      +D++ V L      +      
Sbjct: 60  DFNMIENGDKVMVCLSGGKDS-YAMLEILMRLRERAPINFDIVAVNL-----DQKQPGFP 113

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + +         +++  ++ + ++ +   ++         G+T   C  C+R ++
Sbjct: 114 EHVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LR 157

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L  V  +LGA  +A GH+
Sbjct: 158 RGILYRVAGELGATKIALGHH 178


>gi|78357574|ref|YP_389023.1| argininosuccinate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|119361272|sp|Q30YB8|ASSY_DESDG RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|78219979|gb|ABB39328.1| argininosuccinate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 400

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 16/127 (12%)

Query: 21  MRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+SV   +LK     YD   VTL   +  +     G           R 
Sbjct: 6   KKVVLAYSGGLDTSV---ILKWIAKTYDCEVVTL-TADLGQEEDLDGVDEKALRTGATRA 61

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
                    YV D  E F    I P   + A  E          R +    L+ +    G
Sbjct: 62  ---------YVEDLREEFARDFIFPMMRACAIYEGRYLLGTSIARPLITRRLVEIAHAEG 112

Query: 138 ADVLATG 144
           A  +A G
Sbjct: 113 AQAVAHG 119


>gi|218768381|ref|YP_002342893.1| NH(3)-dependent NAD synthetase [Neisseria meningitidis Z2491]
 gi|121052389|emb|CAM08721.1| NH(3)-dependent NAD synthetase [Neisseria meningitidis Z2491]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 37  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 89

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 90  NVSAQTVDLTDTFQT--FEQTVGVHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 142

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 143 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 185

Query: 204 AREMG 208
           A  +G
Sbjct: 186 AEALG 190


>gi|309379968|emb|CBX21379.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 411

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 43/225 (19%)

Query: 26  AMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80
           A+SGG+DS V+  LL R     G+    V +            G      D  D  +  C
Sbjct: 2   ALSGGLDSVVLLQLLVRAGKKGGFIPEAVHIH----------HGLSPRADDWADFCQNYC 51

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
           D + V           +  V        AA              +++         G DV
Sbjct: 52  DMLGVRLETV------KVCVEKNGLGIEAAARQK----------RYATFAEK----GFDV 91

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKES 199
           LA  H+        DD     ++             + A        + + PL    ++ 
Sbjct: 92  LALAHH-------RDDQIETFMLAVARGGGLRALSAMPAVRPLGENGIIWRPLLPFSRQD 144

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
           + D A++ GL   +   + D  +++      ++  ++A I   G 
Sbjct: 145 IWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGR 189


>gi|270264765|ref|ZP_06193030.1| hypothetical protein SOD_i01820 [Serratia odorifera 4Rx13]
 gi|270041448|gb|EFA14547.1| hypothetical protein SOD_i01820 [Serratia odorifera 4Rx13]
          Length = 540

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G D V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKDKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + V   +   E  F
Sbjct: 333 ILGVEFDIVSIEPMF 347


>gi|320011138|gb|ADW05988.1| NAD+ synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 586

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++VA +     G D V G+++                +     DA  + 
Sbjct: 328 VLIGLSGGIDSALVAVIACDALGADNVYGLSM-----------PSKYSSDHSKGDAAELA 376

Query: 81  DTINVSHYVFDYEERF 96
               ++      E  F
Sbjct: 377 RRTGLNFRTVPIEPMF 392


>gi|254458943|ref|ZP_05072366.1| argininosuccinate synthase [Campylobacterales bacterium GD 1]
 gi|207084214|gb|EDZ61503.1| argininosuccinate synthase [Campylobacterales bacterium GD 1]
          Length = 412

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+ +   +VI  T                  G++V  AR+ 
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDEYNAEVITFT-------------ADLGQGEEVEPARQK 52

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDL 129
                +     ++ D +E F    + P           Y  G +    +   + +     
Sbjct: 53  ALDNGIKPENIFILDVQEEFVKDYVFPMFRANAIYEGEYLLGTSIARPLIAKKQI----- 107

Query: 130 LSVTRQLGADVLATG 144
             +  ++GAD ++ G
Sbjct: 108 -EIAYKMGADAVSHG 121


>gi|206602425|gb|EDZ38906.1| NAD+ synthase [Leptospirillum sp. Group II '5-way CG']
          Length = 592

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL 52
           V+V +SGG+DS++VAA+     G + V G+ +
Sbjct: 336 VLVGLSGGIDSALVAAIATDALGPEHVHGLFM 367


>gi|183601391|ref|ZP_02962761.1| glutamine-dependent NAD(+) synthetase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683448|ref|YP_002469831.1| glutamine-dependent NAD(+) synthetase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241191109|ref|YP_002968503.1| putative amidohydrolase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196515|ref|YP_002970070.1| putative amidohydrolase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218997|gb|EDT89638.1| glutamine-dependent NAD(+) synthetase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621098|gb|ACL29255.1| glutamine-dependent NAD(+) synthetase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249501|gb|ACS46441.1| Putative amidohydrolase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251069|gb|ACS48008.1| Putative amidohydrolase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289178853|gb|ADC86099.1| Glutamine-dependent NAD(+) synthetase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794098|gb|ADG33633.1| Putative amidohydrolase [Bifidobacterium animalis subsp. lactis V9]
          Length = 566

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V + +SGG+DS++VA +      G  V G+++                +     DA ++ 
Sbjct: 291 VCLGLSGGIDSALVATMAADAVGGEHVQGISM-----------PSMYSSEGSKDDAAQLA 339

Query: 81  DTINVSHYVFDYEERF 96
           + +  S+ V   +  F
Sbjct: 340 ENLGASYDVQPIKPEF 355


>gi|118151018|ref|NP_001071422.1| cytoplasmic tRNA 2-thiolation protein 1 [Bos taurus]
 gi|122145554|sp|Q0VC66|CTU1_BOVIN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|111305255|gb|AAI20330.1| ATP binding domain 3 [Bos taurus]
 gi|296477482|gb|DAA19597.1| cytoplasmic tRNA 2-thiolation protein 1 [Bos taurus]
          Length = 347

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++L L     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRELAPR-LGISLHL----VAVDEGIGGYRDAALAAVRRQAAR 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  Y + F    +   A S A +G +   C  C   ++   L    R +GA  +
Sbjct: 109 WELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCG-VLRRRALEEGARLVGATHV 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|302565142|ref|NP_001181634.1| cytoplasmic tRNA 2-thiolation protein 1 [Macaca mulatta]
          Length = 348

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++LQL     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRALTPR-LGISLQL----VAVDEGIGGYRDAALAAVRRQAAR 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  YE+ F    +   A S A +G +   C  C   ++   L    R++GA  +
Sbjct: 109 WELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCG-VLRRRALEEGARRVGATHI 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|78357415|ref|YP_388864.1| hypothetical protein Dde_2372 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219820|gb|ABB39169.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 357

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 29/159 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +  +SGG+DS +   +++  G  V  +          +   G                  
Sbjct: 12  LALLSGGLDSILAVKVVQEQGLRVKCLHF-------VTPFFGKPREVNRWE------SMY 58

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQLGADVL 141
            +   V D  + F + +    A  Y  G+   PCVDC   +  +   LL   ++ GA  +
Sbjct: 59  GLDIAVVDVSDDFVSMMRGRPAHGY--GKVLNPCVDCKILMMRRTRALL---QEYGARFI 113

Query: 142 ATGHYIRSRLYVG---------DDGKRRRIMCRPMDLER 171
            +G  +  R              D + R I+ RP+   R
Sbjct: 114 ISGEVVGQRPMSQRRDTLNVIRRDAEVRDILVRPLCALR 152


>gi|37527743|ref|NP_931088.1| thiamine biosynthesis protein ThiI [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|44888378|sp|Q7N0J9|THII_PHOLL RecName: Full=tRNA sulfurtransferase; AltName: Full=Sulfur carrier
           protein ThiS sulfurtransferase; AltName: Full=Thiamine
           biosynthesis protein thiI; AltName: Full=tRNA
           4-thiouridine synthase
 gi|36787179|emb|CAE16256.1| Thiamine biosynthesis protein ThiI [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 482

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 39/189 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     ++   G           ++V   
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNL---GGSAHEIG----------VKQVAHY 226

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +       +   +       V+         G+  +      + +       V  + G  
Sbjct: 227 LWNRFGSSHKVRFVAVDFEPVVAEILEKVDDGQMGVVL----KRMMVRAASKVAERYGVQ 282

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            + TG  +      G    +     R +D   D               +  PL    KE 
Sbjct: 283 AIVTGEAL------GQVSSQTLTNLRLIDNASD-------------TLILRPLISHDKEH 323

Query: 200 VRDLAREMG 208
           +  LARE+G
Sbjct: 324 IIRLAREIG 332


>gi|297716304|ref|XP_002834470.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like, partial
           [Pongo abelii]
          Length = 178

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++LQL     A            +   RR    
Sbjct: 38  VAVGASGGKDSTVLAHVLRALAPR-LGISLQL----VAVDEGIGGYRDAALAAVRRQAAR 92

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  YE+ F    +   A S A +G +   C  C   ++   L    R++GA  +
Sbjct: 93  WELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCG-VLRRRALEEGARRVGATHI 151

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRP 166
            TG     R     +   R      
Sbjct: 152 VTGERSTGRRAALSEAVGRMHWRGG 176


>gi|238062780|ref|ZP_04607489.1| asparagine synthase [Micromonospora sp. ATCC 39149]
 gi|237884591|gb|EEP73419.1| asparagine synthase [Micromonospora sp. ATCC 39149]
          Length = 594

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDG 44
           D+ V V +SGG+DSS+V ALL   G
Sbjct: 260 DVPVGVLLSGGLDSSLVVALLAEQG 284


>gi|228471015|ref|ZP_04055859.1| ExsB protein [Porphyromonas uenonis 60-3]
 gi|228307235|gb|EEK16258.1| ExsB protein [Porphyromonas uenonis 60-3]
          Length = 217

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 32/92 (34%)

Query: 24  VVAMSGGVDSSVVAALLKRD-----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           ++A+SGGVDS+ +    + +     G+D                  GS    +++  A+ 
Sbjct: 5   LIALSGGVDSTTLLYEYREEIACAVGFD-----------------YGSKHNARELAAAKA 47

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAA 110
           +C  + + + +              F   Y  
Sbjct: 48  ICRELEIPYLIIPLA----------FIGEYFR 69


>gi|116072582|ref|ZP_01469848.1| hypothetical protein BL107_08726 [Synechococcus sp. BL107]
 gi|116064469|gb|EAU70229.1| hypothetical protein BL107_08726 [Synechococcus sp. BL107]
          Length = 304

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 65/193 (33%), Gaps = 45/193 (23%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +A SGGVDS++VAA+     Y+  G       S  A        A   + +AR     I 
Sbjct: 43  IAYSGGVDSTLVAAIA----YECKG------ESAVAVTGVSPALAPHLLQEARHQAGWIG 92

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + H      E        P  SS        P   C     F+    + R L     A G
Sbjct: 93  IRHQELPTAELE-----DPAYSS-------NPVDRC-----FACKRELHRHLKPIATAAG 135

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--KESVRD 202
             +       DD    R     +D  R                +R PL ++K  K ++R 
Sbjct: 136 DALVIDGVNLDDLGDHRP---GIDAARQ-------------AGVRSPLAELKIDKATIRQ 179

Query: 203 LAREMGLDIADKS 215
           L+R +G    DK 
Sbjct: 180 LSRALGFPWWDKP 192


>gi|78185503|ref|YP_377938.1| hypothetical protein Syncc9902_1937 [Synechococcus sp. CC9902]
 gi|78169797|gb|ABB26894.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 292

 Score = 41.7 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 65/193 (33%), Gaps = 45/193 (23%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84
           +A SGGVDS++VAA+     Y+  G       S  A        A   + +AR     I 
Sbjct: 31  IAYSGGVDSTLVAAIA----YECKG------ESAVAVTGVSPALAPHLLQEARHQAGWIG 80

Query: 85  VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
           + H      E        P  SS        P   C     F+    + R L     A G
Sbjct: 81  IRHQELPTAELE-----DPAYSS-------NPVDRC-----FACKRELHRHLKPIATAAG 123

Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--KESVRD 202
             +       DD    R     +D  R                +R PL ++K  K ++R 
Sbjct: 124 DALVIDGVNLDDLGDHRP---GIDAARQ-------------AGVRSPLAELKIDKATIRQ 167

Query: 203 LAREMGLDIADKS 215
           L+R +G    DK 
Sbjct: 168 LSRALGFPWWDKP 180


>gi|326381906|ref|ZP_08203599.1| GMP synthase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199332|gb|EGD56513.1| GMP synthase [Gordonia neofelifaecis NRRL B-59395]
          Length = 527

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 58/191 (30%), Gaps = 25/191 (13%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +  +SGGVDS+V AAL++R  G  +  V     +       +              V  T
Sbjct: 226 ICGLSGGVDSAVAAALVQRAIGDRLTCVF---VDHGLLRAGEREQVQTDF------VAAT 276

Query: 83  INVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
                   D E+ F    + V  P       G   +   +   +    D          D
Sbjct: 277 -GARLVTVDAEDVFLGHLDGVSDPETKRKIIGREFIRSFEGAVSEVLGD--QAAAGKKVD 333

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L  G      +  G  G       +           +    +     L  PL  + K+ 
Sbjct: 334 FLVQGTLYPDVVESG--GGSGTANIKSHHN-------VGGLPEDLEFKLVEPLRLLFKDE 384

Query: 200 VRDLAREMGLD 210
           VR + RE+GL 
Sbjct: 385 VRAVGRELGLP 395


>gi|319410627|emb|CBY90996.1| NH(3)-dependent NAD(+) synthetase [Neisseria meningitidis WUE 2594]
          Length = 263

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 27  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 79

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 80  NVSAQTVDLTDTFQT--FEQTVGVHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 132

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 133 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 175

Query: 204 AREMG 208
           A  +G
Sbjct: 176 AEALG 180


>gi|312065342|ref|XP_003135744.1| tRNA 2-thiolation protein 1 [Loa loa]
 gi|307769103|gb|EFO28337.1| tRNA 2-thiolation protein 1 [Loa loa]
          Length = 321

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 31/237 (13%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  +V V  SGG DS+V+  +L +    YD  G+ + L +  +      +      +   
Sbjct: 47  KGKKVAVGASGGKDSTVLIHVLNKLNQKYD-YGLDIILLSIDEG----ITGYRDDSLKAV 101

Query: 77  RRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R  +   +   +  Y++ +             +A      C  C    +   L     +
Sbjct: 102 ERNRNEYGLPLIIMSYKQLYGWT-----MDEIVSAVGVRNNCTFCGVFRR-RALDRGAVE 155

Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
            GA+++ATGH         DD     ++   R       +   +    +  L   + PL 
Sbjct: 156 CGANIIATGHNA-------DDMAETVLLNVLRGDLARLQRCTDIVTELEGCLPRTK-PLK 207

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA--LEGDIVHL 248
            + ++ +   A   GLD          C      + + V+     +       I+ L
Sbjct: 208 YVFEKDIVMYAHFNGLDYFSTE-----CRYAPDSFRNYVRMYVKKLERLQPKAILDL 259


>gi|317054937|ref|YP_004103404.1| exsB protein [Ruminococcus albus 7]
 gi|315447206|gb|ADU20770.1| exsB protein [Ruminococcus albus 7]
          Length = 228

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 21 MRVVVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          M+ +V  SGG+DS+   AL  K+ G + V  +          S   G     +++  A+ 
Sbjct: 1  MKALVLFSGGLDSATCLALAIKKHGKENVTAL----------SVFYGQ-KHDKEIQAAKN 49

Query: 79 VCDTINVSHYVFDYEERFRN 98
          V +   V+    D    F +
Sbjct: 50 VAEYYGVTLKTLDLALIFAD 69


>gi|254468201|ref|ZP_05081607.1| NAD+ synthetase [beta proteobacterium KB13]
 gi|207087011|gb|EDZ64294.1| NAD+ synthetase [beta proteobacterium KB13]
          Length = 524

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62
           V  A  L + D  K  K   + + +SGG+DS++VA +  +              +     
Sbjct: 250 VLNACILGTKDYIKKNKIKNIFLGLSGGIDSALVAYIASKA---------INKENINCIM 300

Query: 63  RKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95
            +    +   + DA+ +   + V+    +    
Sbjct: 301 MRSKYTSKISIDDAKNLAKNLGVNFIDKNLSSL 333


>gi|160878299|ref|YP_001557267.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg]
 gi|160426965|gb|ABX40528.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg]
          Length = 492

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 23  VVVAMSGGVDS---SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V+V +SGG DS         L+   +      L LY        +G   A +D    + +
Sbjct: 21  VIVGVSGGADSICLLTCLHRLREQYH------LNLYAVHVNHMLRGM-EADEDEAFVQSM 73

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C+++++  +        R  V     +   +G T        R +++        ++ A 
Sbjct: 74  CNSLSIPLHCV------REDVKR--IAE-LSGTTIEE---AGRNLRYLSFEQECERVKAH 121

Query: 140 VLATGH 145
            +A  H
Sbjct: 122 KIAVAH 127


>gi|331089912|ref|ZP_08338804.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330403144|gb|EGG82705.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 512

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 23  VVVAMSGGVDSSVVAAL----LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V+  +SGG DS V   L    L+   G++V             +       A  D    +
Sbjct: 53  VIAGVSGGADS-VCLLLTLCSLREKFGFEVKVCH--------VNHCLRGAAADADEEYVK 103

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++C  + V   V      FR  V         A +    C +  R V+      +  + G
Sbjct: 104 KLCGELGVECRV------FRKEV------ELIAEKRKQSCEEAGREVRREAFEQMCAENG 151

Query: 138 ADVLATGHY----IRSRLYVGDDGKRRRIMC 164
              +AT H+      + L     G   R +C
Sbjct: 152 GTKIATAHHRDDQAETVLLNIARGTGIRGLC 182


>gi|288554678|ref|YP_003426613.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4]
 gi|288545838|gb|ADC49721.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4]
          Length = 465

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 26/129 (20%)

Query: 23  VVVAMSGGVDSSVVA--ALLKRD---GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V VA+SGG DS +     L+KR    G +V  V          + +     +  D    R
Sbjct: 21  VFVAVSGGPDS-MALLHYLIKRREMYGIEVEAVH--------VNHQLRGAESVDDEQYVR 71

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           + C   N+  +        +   +  FAS    G            +++           
Sbjct: 72  KFCTEHNIPLHT-------KKMDVQTFASQNKMGTQKAA-----SELRYQWFDEWLENRP 119

Query: 138 ADVLATGHY 146
              +AT H+
Sbjct: 120 HSCIATAHH 128


>gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 422

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 55/255 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DARRVCD 81
           V VA+SGGVDS V+  L            +  +  +       +      +  ++++  D
Sbjct: 12  VAVAVSGGVDSIVLLHL------------MTNWAKKNKLSLPTALTVNHGLRPESQKEAD 59

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 +V  Y +         F  ++             R  ++  L    +      L
Sbjct: 60  ------FVVSYAKELGAK--ESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYL 111

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCR-----PMDLER--DQSYFLFATTQQQLCDLRF-PLG 193
              H+         D +    + R      +D     D   FL            F PL 
Sbjct: 112 LVAHH--------KDDQAETFLLRLERGSGVDGLSSMDYKSFLNGIY-------IFRPLL 156

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +  +  +   A+   L   +   + D+      KY   + R     +   +I+     + 
Sbjct: 157 NFSRSEIEKYAKLHRLKWVEDRSNYDL------KYRRTLYRNLLKASDNQEILTERICLT 210

Query: 254 GRH-----NGIINYT 263
             H       +++YT
Sbjct: 211 ALHMKRAAKALMHYT 225


>gi|223999079|ref|XP_002289212.1| GMP synthase [Thalassiosira pseudonana CCMP1335]
 gi|220974420|gb|EED92749.1| GMP synthase [Thalassiosira pseudonana CCMP1335]
          Length = 539

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 63/203 (31%), Gaps = 48/203 (23%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-RRVC 80
            V+ A+SGGVDS+V A L+ R     IG      +   A      C    +     +R+ 
Sbjct: 240 HVIGAVSGGVDSTVAAVLMTRA----IG------DRFHAVLVDNGCLRKDEATKVLKRMR 289

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--------- 131
           D   V+    D ++RF              G T     +  R +     +          
Sbjct: 290 DDCGVNLRCVDAKDRFL---------GLLKGVT---DPEQKRKIIGGTFIDIFQEEANKI 337

Query: 132 VTRQLGADVL----ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           V      D L         I S  Y G     +                +          
Sbjct: 338 VAESGKCDFLLQGTLYPDVIESISYKGPSATIKTHHN------------VGGLPASMKLK 385

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L  PL ++ K+ VR+L   +G+D
Sbjct: 386 LIEPLRELFKDEVRELGIALGID 408


>gi|160903135|ref|YP_001568716.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis SJ95]
 gi|160360779|gb|ABX32393.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis SJ95]
          Length = 1496

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query: 22   RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   LK   Y  ++I V + +    +    +    +      A +V
Sbjct: 1086 KVVLAYSGGLDTSVIIPWLKEK-YNCEIIAVCIDVGQGEETHVIEKKALSSG----ASKV 1140

Query: 80   CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
                    YV D  E F    I P           Y  G +    +          L+ +
Sbjct: 1141 --------YVEDVVEEFVTDYIFPTLKAGAIYEGKYLLGTSFARPLMA------KKLVEI 1186

Query: 133  TRQLGADVLATG 144
             ++ GA+V+A G
Sbjct: 1187 AQKEGANVIAHG 1198


>gi|238787216|ref|ZP_04631015.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641]
 gi|238724478|gb|EEQ16119.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641]
          Length = 461

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 9  LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLK 41
          LN L   +  +  RV+V  SGG+DSSV+  LL 
Sbjct: 12 LNPL-FAQLGEQRRVLVGFSGGLDSSVLLHLLV 43


>gi|293603062|ref|ZP_06685496.1| PP-loop family protein [Achromobacter piechaudii ATCC 43553]
 gi|292818456|gb|EFF77503.1| PP-loop family protein [Achromobacter piechaudii ATCC 43553]
          Length = 325

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLY 55
           ++  T     D +   +  RV+V +SGG DS       LL+        +++I V L   
Sbjct: 33  LARETTRALSDYNMIEEGDRVMVCLSGGKDS-YAMLDILLQLQKRAPFKFELIAVNL--- 88

Query: 56  NSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL 115
              +           Q + D       + V  ++ + ++ +   ++         G+T  
Sbjct: 89  --DQKQPGFPDHILPQYLKD-------LGVPFHI-ETQDTYS--IVTRVLEE---GKT-- 131

Query: 116 PCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146
            C  C+R ++   L  V  +LGA  +A GH+
Sbjct: 132 MCSLCSR-LRRGILYRVASELGATKIALGHH 161


>gi|254672140|emb|CBA04914.1| NH(3)-dependent NAD+ synthetase [Neisseria meningitidis alpha275]
          Length = 263

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 31/185 (16%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           VV +SGG+DS+VV+AL  R G   + + + +       +R            A       
Sbjct: 27  VVGVSGGIDSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYA------- 79

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
           NVS    D  + F+          +       P    N   +   L      L       
Sbjct: 80  NVSAQTVDLTDTFQT--FEQTVGVHQTAFDNQPLSLANARSRLRML-----TLYYYGQIH 132

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +       +D           D   D                  P+ D+ K  V  L
Sbjct: 133 GLLVTGTGNKIEDFGVGFFTKYG-DGGVD----------------ISPIADLTKTQVYRL 175

Query: 204 AREMG 208
           A  +G
Sbjct: 176 AEALG 180


>gi|227822241|ref|YP_002826212.1| NAD synthetase [Sinorhizobium fredii NGR234]
 gi|227341241|gb|ACP25459.1| glutamine-dependent NAD(+) synthetase [Sinorhizobium fredii NGR234]
          Length = 560

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79
             VV+ +SGG+DS++ AAL              L   R  +        + + + DA   
Sbjct: 293 KNVVLGLSGGIDSAICAALAVDA----------LGEERVRTIMLPYRYTSQESLKDAEAC 342

Query: 80  CDTINVSHYVFDYEE 94
              +   + V   EE
Sbjct: 343 AKALGCYYDVVAIEE 357


>gi|321263847|ref|XP_003196641.1| glutamine amidotransferase (glutamine-hydrolyzing) [Cryptococcus
           gattii WM276]
 gi|317463118|gb|ADV24854.1| Glutamine amidotransferase (glutamine-hydrolyzing), putative
           [Cryptococcus gattii WM276]
          Length = 544

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L+       IG      + ++    K +          D 
Sbjct: 230 EKGQVIGAVSGGVDSTVAAKLMHEA----IGDRFHAIMVDNGVLRKDEAKKVHKMLTID- 284

Query: 77  RRVCDTINVSHYVFDYEERF 96
                 + VS  V D  E F
Sbjct: 285 ------LGVSLTVVDASELF 298


>gi|262368656|ref|ZP_06061985.1| argininosuccinate synthetase [Acinetobacter johnsonii SH046]
 gi|262316334|gb|EEY97372.1| argininosuccinate synthetase [Acinetobacter johnsonii SH046]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQNVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEAYGAVKA 71


>gi|262375961|ref|ZP_06069192.1| argininosuccinate synthase [Acinetobacter lwoffii SH145]
 gi|262309055|gb|EEY90187.1| argininosuccinate synthase [Acinetobacter lwoffii SH145]
          Length = 446

 Score = 41.3 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQNVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEAYGAVKA 71


>gi|293394849|ref|ZP_06639139.1| NAD(+) synthase [Serratia odorifera DSM 4582]
 gi|291422600|gb|EFE95839.1| NAD(+) synthase [Serratia odorifera DSM 4582]
          Length = 540

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DS++  A+     G + V  + +                A   + DA+   +
Sbjct: 284 VLGLSGGIDSALTLAIAVDALGKEKVQALMM-----------PFRYTADISIADAKEEAE 332

Query: 82  TINVSHYVFDYEERF 96
            + V   V   E  F
Sbjct: 333 ILGVEFDVVSIEPMF 347


>gi|257068069|ref|YP_003154324.1| GMP synthase (glutamine-hydrolyzing) [Brachybacterium faecium DSM
           4810]
 gi|256558887|gb|ACU84734.1| GMP synthase (glutamine-hydrolyzing) [Brachybacterium faecium DSM
           4810]
          Length = 533

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 46/206 (22%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVT-----LQLYNSRKASKRKGSCCAGQDVYDAR 77
           + A+SGGVDS+V AAL++R  G  +  V      ++   S +  K  G            
Sbjct: 223 ICALSGGVDSAVAAALVQRAIGDRLTCVYVNHGLMRQDESAQIEKAFGESTG-------- 274

Query: 78  RVCDTINVSHYVFDYEERFRNA---VIVP----------FASSYAAGETPLPCVDCNRTV 124
                      + D E++F +A   V  P          F  ++   +     +   + V
Sbjct: 275 ------GAKLVMVDAEQQFLDALAGVTDPETKRKIIGREFIRTFERAQ---ADILREQGV 325

Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184
              +      +  A ++    Y       G DG       +           +    +  
Sbjct: 326 VEGEGAEAHAEQKAFLVQGTLYPDVVESGGGDG---AANIKSHHN-------VGGLPEDL 375

Query: 185 LCDLRFPLGDMKKESVRDLAREMGLD 210
             +L  PL  + K+ VR +  ++GL 
Sbjct: 376 AFELVEPLRALFKDEVRAVGTQLGLP 401


>gi|296124394|ref|YP_003632172.1| argininosuccinate synthase [Planctomyces limnophilus DSM 3776]
 gi|296016734|gb|ADG69973.1| argininosuccinate synthase [Planctomyces limnophilus DSM 3776]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 22/127 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQD--VYDAR- 77
           V+A SGG+D+SV+   L+ +GYDV  V + +      R+A  +K   C  +   + DA+ 
Sbjct: 5   VLAYSGGLDTSVILGWLQDEGYDVHCVYVDVGQPCEDREAILKKAHDCGAKSARIVDAQE 64

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
            +C        V  ++ ++ N         Y  G          R +     L V R++G
Sbjct: 65  EMCRDFAFP--VLQWQAKYENI--------YLLG------TSIARPLISKVCLQVCREVG 108

Query: 138 ADVLATG 144
           AD  A G
Sbjct: 109 ADAYAHG 115


>gi|195028039|ref|XP_001986888.1| GH20281 [Drosophila grimshawi]
 gi|226711418|sp|B4J5B3|CTU1_DROGR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|193902888|gb|EDW01755.1| GH20281 [Drosophila grimshawi]
          Length = 343

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  +V VA SGG DS+V+A    LL    +D  G+ L L +  +      +      +  
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVMKLLNER-HD-YGLDLVLLSIDEG----ITGYRDDSLET 102

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            ++  D   +   +  YEE +    + ++         G +   C  C    +   L   
Sbjct: 103 VKQNRDDYQMPLKILSYEELYGWTMDRIVA------QIGRS-NNCTFCGVFRR-QALDRG 154

Query: 133 TRQLGADVLATGHYI 147
            + LG D +ATGH  
Sbjct: 155 AKLLGVDSIATGHNA 169


>gi|187929635|ref|YP_001900122.1| NAD synthetase [Ralstonia pickettii 12J]
 gi|309781599|ref|ZP_07676333.1| phenylalanyl-tRNA synthetase, beta subunit [Ralstonia sp.
           5_7_47FAA]
 gi|187726525|gb|ACD27690.1| NAD+ synthetase [Ralstonia pickettii 12J]
 gi|308919574|gb|EFP65237.1| phenylalanyl-tRNA synthetase, beta subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 545

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +SGGVDS++V A+     G D V  V +                A     DAR +  
Sbjct: 292 IIGLSGGVDSALVLAIAVDALGADRVRAVMM-----------PSRYTADISWVDARDMAA 340

Query: 82  TINVSHYVFDYEERF 96
            + V +        F
Sbjct: 341 RLGVQYDEIAISPMF 355


>gi|118474384|ref|YP_891314.1| ExsB protein [Campylobacter fetus subsp. fetus 82-40]
 gi|261886302|ref|ZP_06010341.1| ExsB protein [Campylobacter fetus subsp. venerealis str. Azul-94]
 gi|189038902|sp|A0RM81|QUEC_CAMFF RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|118413610|gb|ABK82030.1| ExsB protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 223

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + V  +SGG+DS++ A   K  GY+++ +    ++  + +  K   C          +C
Sbjct: 5  KKAVCVISGGMDSALAAYKAKNSGYEIVALH---FDYNQRTMNKERECFNL-------IC 54

Query: 81 DTINVS 86
          D ++V 
Sbjct: 55 DDLDVE 60


>gi|85711028|ref|ZP_01042088.1| NAD(+) synthase [Idiomarina baltica OS145]
 gi|85694941|gb|EAQ32879.1| NAD(+) synthase [Idiomarina baltica OS145]
          Length = 538

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 3   VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKA 60
           V +A  L+  D         V++ +SGG+DS++  A+     G + V  V +        
Sbjct: 258 VYDALVLSVRDYVNKNGFKNVLLGLSGGIDSALTLAIASDALGSERVQAVMM-------- 309

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96
                   +   + DA +  +T+NV + V   E  F
Sbjct: 310 ---PFKYTSNMSLEDAEQQAETLNVKYDVVPIEPMF 342


>gi|109897304|ref|YP_660559.1| argininosuccinate synthase [Pseudoalteromonas atlantica T6c]
 gi|119361307|sp|Q15X83|ASSY_PSEA6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|109699585|gb|ABG39505.1| argininosuccinate synthase [Pseudoalteromonas atlantica T6c]
          Length = 412

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 25/132 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S +   LK             Y+    +         +++   R   
Sbjct: 7   KKVVLAYSGGLDTSAIIPWLKE-----------NYDCEVIAFAADVGQGDEELEGLREKA 55

Query: 81  DTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D ++ F +  I P           Y  G +    +     V       +
Sbjct: 56  IKTGASECYIVDLKDEFVSDYIYPTITTGAVYEGQYLLGTSMARPIIAKAQV------EI 109

Query: 133 TRQLGADVLATG 144
            R++GAD L  G
Sbjct: 110 ARKVGADALCHG 121


>gi|195498973|ref|XP_002096752.1| GE25842 [Drosophila yakuba]
 gi|194182853|gb|EDW96464.1| GE25842 [Drosophila yakuba]
          Length = 419

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 29/131 (22%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V++A SGG+D+S +   L    Y+V+ V                    +D   A +    
Sbjct: 6   VILAYSGGLDTSCILKWLLDKQYEVVCV-------------LADVGQKEDFTAAEKKALK 52

Query: 83  INV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPL-PCVDCNRTVKFSDLLSVT 133
           I      V D ++ F    I P           Y  G +   PC+          L+ V 
Sbjct: 53  IGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISV-------ALMKVA 105

Query: 134 RQLGADVLATG 144
              GA  LA G
Sbjct: 106 ADYGAKYLAHG 116


>gi|193216339|ref|YP_001997538.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC
           35110]
 gi|193089816|gb|ACF15091.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC
           35110]
          Length = 323

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 22/134 (16%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD- 75
            K+ +V++A SGG DS  + +LLK+   +    + LQL     A    G      D  + 
Sbjct: 19  KKNEKVLLAFSGGADSMALLSLLKKVQPF----LNLQL---AAAHCNFGLRGEESDADET 71

Query: 76  -ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
             +  CD + +  +               F + + A +  +   +  R ++++    +  
Sbjct: 72  FCQMQCDALEIPIFTI------------HFDTKHFAQQHKMSIEEAARHLRYNFFYKLAE 119

Query: 135 QLGADVLATGHYIR 148
                 +AT H+  
Sbjct: 120 IERCSKIATAHHAN 133


>gi|115376353|ref|ZP_01463591.1| asparagine synthase, glutamine-hydrolyzing [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366632|gb|EAU65629.1| asparagine synthase, glutamine-hydrolyzing [Stigmatella aurantiaca
           DW4/3-1]
          Length = 525

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +   D  V + +SGGVDSS++AALL + G           +    +          D+  
Sbjct: 192 QWVADHPVGIFLSGGVDSSLLAALLAQGG-----------SREIHTFSLADDPTLPDLAV 240

Query: 76  ARRVCDTINVSHYVFDYE 93
           +RR+ + +   H+ + +E
Sbjct: 241 SRRLSEALGTHHHEYSFE 258


>gi|229013852|ref|ZP_04170980.1| thiamine biosynthesis protein thiI [Bacillus mycoides DSM 2048]
 gi|228747521|gb|EEL97396.1| thiamine biosynthesis protein thiI [Bacillus mycoides DSM 2048]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V   L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVATYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229019875|ref|ZP_04176675.1| thiamine biosynthesis protein thiI [Bacillus cereus AH1273]
 gi|228741428|gb|EEL91628.1| thiamine biosynthesis protein thiI [Bacillus cereus AH1273]
          Length = 242

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V+V +SGG+DS V   L  + G  V  V      S   +  +          +  + 
Sbjct: 16 GGKVMVLLSGGIDSPVATYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 72

Query: 80 CDTINVSHYVFDYEE 94
          C    V+ ++  + E
Sbjct: 73 CKR--VTLHLVPFTE 85


>gi|229026102|ref|ZP_04182481.1| thiamine biosynthesis protein thiI [Bacillus cereus AH1272]
 gi|228735204|gb|EEL85820.1| thiamine biosynthesis protein thiI [Bacillus cereus AH1272]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V   L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVATYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229062333|ref|ZP_04199652.1| thiamine biosynthesis protein thiI [Bacillus cereus AH603]
 gi|228716965|gb|EEL68648.1| thiamine biosynthesis protein thiI [Bacillus cereus AH603]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V   L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVATYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229169374|ref|ZP_04297084.1| thiamine biosynthesis protein thiI [Bacillus cereus AH621]
 gi|228614137|gb|EEK71252.1| thiamine biosynthesis protein thiI [Bacillus cereus AH621]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V   L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVATYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|229175358|ref|ZP_04302873.1| thiamine biosynthesis protein thiI [Bacillus cereus MM3]
 gi|228608190|gb|EEK65497.1| thiamine biosynthesis protein thiI [Bacillus cereus MM3]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
             +V+V +SGG+DS V   L  + G  V  V      S   +  +          +  + 
Sbjct: 178 GGKVMVLLSGGIDSPVATYLTMKRGVSVEAVHFH---SPPFTSERAKQKVIDLAQELTKY 234

Query: 80  CDTINVSHYVFDYEE 94
           C    V+ ++  + E
Sbjct: 235 CKR--VTLHLVPFTE 247


>gi|91976537|ref|YP_569196.1| NAD synthetase [Rhodopseudomonas palustris BisB5]
 gi|91682993|gb|ABE39295.1| NH(3)-dependent NAD(+) synthetase [Rhodopseudomonas palustris
           BisB5]
          Length = 585

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 16/87 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G D V GV L                A   + DA  + 
Sbjct: 296 VLLGISGGIDSALCAAIAVDALGADKVRGVML-----------PFRYTAQISLDDADGLA 344

Query: 81  DTINVSHYVFDYEER---FRNAVIVPF 104
             +   + V         F + +  PF
Sbjct: 345 RALGFGYEVLPIAAAVNGFEDILAKPF 371


>gi|323694216|ref|ZP_08108392.1| hypothetical protein HMPREF9475_03256 [Clostridium symbiosum
           WAL-14673]
 gi|323501689|gb|EGB17575.1| hypothetical protein HMPREF9475_03256 [Clostridium symbiosum
           WAL-14673]
          Length = 475

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 60/206 (29%), Gaps = 40/206 (19%)

Query: 23  VVVAMSGGVDSSVVAALL-------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+  +SGG DS     LL       +  G ++  V   +++  + S+        +++  
Sbjct: 21  VIAGLSGGADS---VCLLRILRCLRQELGIELRAVH--VHHGLRGSEADRDAAFSEEL-- 73

Query: 76  ARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               C  +++       +  E  R A I                 +  R  ++  L +  
Sbjct: 74  ----CKELDIPFKTVRINAAEEAREAGIS--------------VEEAGRRARYRILEAEA 115

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                D     H   +             + R   L+      L      +   +  P+ 
Sbjct: 116 LLWEKDGRNHVHIATAHHGNDSAETILHNLFRGSGLK-----GLSGIPPVR-GRIIRPIL 169

Query: 194 DMKKESVRDLAREMGLDIADKSDSQD 219
             ++  + D  R  G    + S +  
Sbjct: 170 WAQRREILDWLRAHGYPYVEDSTNSG 195


>gi|323487345|ref|ZP_08092645.1| hypothetical protein HMPREF9474_04396 [Clostridium symbiosum
           WAL-14163]
 gi|323399390|gb|EGA91788.1| hypothetical protein HMPREF9474_04396 [Clostridium symbiosum
           WAL-14163]
          Length = 475

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 60/206 (29%), Gaps = 40/206 (19%)

Query: 23  VVVAMSGGVDSSVVAALL-------KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           V+  +SGG DS     LL       +  G ++  V   +++  + S+        +++  
Sbjct: 21  VIAGLSGGADS---VCLLRILRCLRQELGIELRAVH--VHHGLRGSEADRDAAFSEEL-- 73

Query: 76  ARRVCDTINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               C  +++       +  E  R A I                 +  R  ++  L +  
Sbjct: 74  ----CKELDIPFKTVRINAAEEAREAGIS--------------VEEAGRRARYRILEAEA 115

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
                D     H   +             + R   L+      L      +   +  P+ 
Sbjct: 116 LLWEKDGRNHVHIATAHHGNDSAETILHNLFRGSGLK-----GLSGIPPVR-GRIIRPIL 169

Query: 194 DMKKESVRDLAREMGLDIADKSDSQD 219
             ++  + D  R  G    + S +  
Sbjct: 170 WAQRREILDWLRAHGYPYVEDSTNSG 195


>gi|307320617|ref|ZP_07600031.1| NAD+ synthetase [Sinorhizobium meliloti AK83]
 gi|306893767|gb|EFN24539.1| NAD+ synthetase [Sinorhizobium meliloti AK83]
          Length = 334

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           V+ +SGG+DSSV  AL  R  G  +V  + +   +S   S R G           R V +
Sbjct: 45  VLGLSGGIDSSVSVALAVRAVGAKNVYCLFMPENDSDPESLRLG-----------RLVAE 93

Query: 82  TINVSHYVFD 91
           T  V   V D
Sbjct: 94  TFGVEAVVED 103


>gi|269792536|ref|YP_003317440.1| NAD+ synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100171|gb|ACZ19158.1| NAD+ synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 45/183 (24%)

Query: 32  DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA-GQDVYDARRVCDTINVSHYVF 90
           DS+VVAALL           ++ +    +      C +   D  DA  V   + +     
Sbjct: 41  DSAVVAALL-----------MRAFGRGGSLGVLMPCHSMSSDEEDAWLVASALGIPALKV 89

Query: 91  DYEERFRNAVIVPFASSYAAGETPLPCV-DCN--RTVKFSDLLSVTRQLGADVLATGHYI 147
           D    F          + + G   +  +   N    ++ + L ++ +  G + L  G   
Sbjct: 90  DLSSPF-----DSMLEALSLGGVEMSQMSRANIKPRLRMTTLYAIAQ--GRNFLVCGTGN 142

Query: 148 RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207
           R+ L  G   K         D   D                  PL  + K  V  LA  +
Sbjct: 143 RAELTYGYFTKY-------GDSGVD----------------ILPLSRLLKHEVWALAEFL 179

Query: 208 GLD 210
           G+ 
Sbjct: 180 GVP 182


>gi|254392264|ref|ZP_05007449.1| hypothetical protein SSCG_04819 [Streptomyces clavuligerus ATCC
           27064]
 gi|294816947|ref|ZP_06775589.1| Putative secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|326445719|ref|ZP_08220453.1| putative secreted protein [Streptomyces clavuligerus ATCC 27064]
 gi|197705936|gb|EDY51748.1| hypothetical protein SSCG_04819 [Streptomyces clavuligerus ATCC
           27064]
 gi|294321762|gb|EFG03897.1| Putative secreted protein [Streptomyces clavuligerus ATCC 27064]
          Length = 583

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 24  VVA--MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +V   +SGG+DSS +A L    G      TL+      A        + +D+  ARRV D
Sbjct: 207 IVGADVSGGLDSSTLAILAAEAG------TLR------AVTYTDPHTSAEDLRHARRVSD 254

Query: 82  TINVSHYV 89
            I    +V
Sbjct: 255 HIQTPLHV 262


>gi|119872484|ref|YP_930491.1| thiamine biosynthesis protein ThiI [Pyrobaculum islandicum DSM
           4184]
 gi|119673892|gb|ABL88148.1| thiamine biosynthesis/tRNA modification protein ThiI [Pyrobaculum
           islandicum DSM 4184]
          Length = 472

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDV 47
            + +V+  +SGG+DS V A ++ R G  V
Sbjct: 170 SEGKVLALVSGGIDSPVAAWMMMRRGAHV 198


>gi|255089286|ref|XP_002506565.1| predicted protein [Micromonas sp. RCC299]
 gi|226521837|gb|ACO67823.1| predicted protein [Micromonas sp. RCC299]
          Length = 545

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           D  V+ A+SGGVDS+V A L+ + 
Sbjct: 238 DDHVICALSGGVDSAVAATLVHKA 261


>gi|86739358|ref|YP_479758.1| GMP synthase [Frankia sp. CcI3]
 gi|86566220|gb|ABD10029.1| GMP synthase (glutamine-hydrolyzing) [Frankia sp. CcI3]
          Length = 556

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD 43
           R++  +SGGVDS+V AAL+ R 
Sbjct: 254 RLICGLSGGVDSAVAAALVHRA 275


>gi|268580781|ref|XP_002645373.1| Hypothetical protein CBG15441 [Caenorhabditis briggsae]
 gi|187027151|emb|CAP33778.1| CBR-ASNS-2 protein [Caenorhabditis briggsae AF16]
          Length = 567

 Score = 41.3 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 42/184 (22%)

Query: 19  KDMRVVVAMSGGVD----SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
            D  + V +SGG+D    SS+ +  +KR G  V             S   G      DV 
Sbjct: 228 SDAPIGVLLSGGLDSSLVSSIASREMKRRGMTVH------------SFSIGVDHNSPDVV 275

Query: 75  DARRVCDTINVSHY---------VFDYEERFRNAVIVPFASSYA----AGETPLPCVDCN 121
            AR+V   I  +H+         + +  +   +        SY        TP+     +
Sbjct: 276 AARKVAKFIGTTHHEFYFSIQEGIKNLRKLIWH------LESYDVTSIRASTPM--YFLS 327

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYF 176
             ++   +  V    GAD +  G+         ++ ++        +     L  D+S  
Sbjct: 328 EEIRKKGIKVVLSGEGADEIFGGYLYFHNAPSDEEFQKETIDRVLHLYTSDCLRADKSSM 387

Query: 177 LFAT 180
             + 
Sbjct: 388 AHSV 391


>gi|322696411|gb|EFY88204.1| GMP synthase [Metarhizium acridum CQMa 102]
          Length = 581

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 42/203 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-VCD 81
           V+  +SGGVDS+V A L++      IG      +   A+     C    +  + ++ + D
Sbjct: 272 VIGGVSGGVDSTVGATLMREA----IG------DRFIATGINNGCMRRNEFEEVKKNLSD 321

Query: 82  TINVSHYVFDYEERF------------RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129
            + ++  V    E F            +  +I        A  TP        + K    
Sbjct: 322 HLGINPTVVVAGELFLSRLAGVSDPEKKRKIIGSTIEK-EAENTP-------DSGKVEWF 373

Query: 130 LSVTRQLGADVLATGHYI--RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           L  T       +++      + +  VG         C P  +  D+       T  +   
Sbjct: 374 LQGTLYPDVISVSSQTLSDNQEKRKVGASAAHHNTGCLPERVANDE---WPRLTSIEPLR 430

Query: 188 LRFPLGDMKKESVRDLAREMGLD 210
           L F      ++ VR + R++G+ 
Sbjct: 431 LLF------RDEVRAIGRQLGIH 447


>gi|320353077|ref|YP_004194416.1| PP-loop domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320121579|gb|ADW17125.1| PP-loop domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 253

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 60/211 (28%), Gaps = 61/211 (28%)

Query: 22  RVVVAMSGGVDSS----------------VVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
           RV+VA+SGG+DS                            +V+ V +         + +G
Sbjct: 26  RVLVAVSGGMDSLVLVWLLLHWRKKAPIDYAL--------EVVHVDM---------EPEG 68

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                  +  A  V     V  ++          V+               C  C R+ +
Sbjct: 69  EAPGAAAIQTADLVA-RFGVQVHIV---PALWRPVLS---GEGEDARGQDLCFQCARSRR 121

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER------DQSYFLFA 179
            + L    RQ G   +A GH+         D      +               Q  F   
Sbjct: 122 -TQLFEHARQTGCTKIAFGHH--------RDDIVETFLLNLTCAGNISTMSPRQELFAGR 172

Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210
            +      L  PL  + K  +  +  E+GL+
Sbjct: 173 LS------LIRPLAYLDKSEIAAIGGELGLE 197


>gi|225848863|ref|YP_002729027.1| PP-loop domain protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644597|gb|ACN99647.1| PP-loop domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 303

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 18/136 (13%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
           +     K+ +++VA+SGG DS +     L   GY   G  +      + S++        
Sbjct: 41  EFKMFKKEDKILVAVSGGKDS-LSLWKALTNLGYQADGFYI-NLGIGEYSEKSEKL---- 94

Query: 72  DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
               A    + I    Y    ++      I+P        ++   C  C   VK   +  
Sbjct: 95  ----ATAFSEKIGRPLYKISLKQE-----IMP-IPEIKKHDSRPTCSVCGT-VKRYYMNK 143

Query: 132 VTRQLGADVLATGHYI 147
             +  G  ++ATGH +
Sbjct: 144 FAKDNGYKIIATGHNL 159


>gi|297462107|ref|XP_002701984.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bos
           taurus]
 gi|297485927|ref|XP_002695276.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bos
           taurus]
 gi|296477390|gb|DAA19505.1| cytoplasmic tRNA 2-thiolation protein 1-like [Bos taurus]
          Length = 347

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG DS+V+A +L+      +G++L L     A            +   RR    
Sbjct: 54  VAVGASGGKDSTVLAHVLRELAPR-LGISLHL----VAVDEGIGGYRDAALAAVRRQAAR 108

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYA-AGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
             +   V  Y + F    +   A S A +G +   C  C   ++   L    R +GA  +
Sbjct: 109 WELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCG-VLRRRALEEGARLVGATHV 167

Query: 142 ATGHYI 147
            TGH  
Sbjct: 168 VTGHNA 173


>gi|89055837|ref|YP_511288.1| NAD synthetase [Jannaschia sp. CCS1]
 gi|88865386|gb|ABD56263.1| NH(3)-dependent NAD(+) synthetase [Jannaschia sp. CCS1]
          Length = 552

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           VV+ +SGG+DS++VA +     G + +   +                +   + DAR V  
Sbjct: 287 VVLGLSGGIDSAIVACIAADAIGPENVHCVM----------LPSRFTSEVSLDDARDVAA 336

Query: 82  TINVSHYVF 90
            +       
Sbjct: 337 RLGCRLDTI 345


>gi|53713931|ref|YP_099923.1| asparagine synthetase B [Bacteroides fragilis YCH46]
 gi|52216796|dbj|BAD49389.1| glutamine-hydrolyzing asparagine synthetase B [Bacteroides fragilis
           YCH46]
          Length = 558

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 236 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 288

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 289 REVAEYIGTVHHEINYTLQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 347

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                    ++    L       +R +  +  ++   +     L  ++S   +  
Sbjct: 348 MVLSGEGADEIFGGYLYFHKAPDARAFHEETVRKLSKLHLYDCLRANKSLAAWGV 402


>gi|327404257|ref|YP_004345095.1| NAD+ synthetase [Fluviicola taffensis DSM 16823]
 gi|327319765|gb|AEA44257.1| NAD+ synthetase [Fluviicola taffensis DSM 16823]
          Length = 259

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
          VV +SGGVDS+V +AL  + G  V+ + +
Sbjct: 28 VVGISGGVDSAVTSALCAKTGMKVLVLNM 56


>gi|317122881|ref|YP_004102884.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592861|gb|ADU52157.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           marianensis DSM 12885]
          Length = 304

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 19  KDMRVVVAMSGGVDSSVVAA-LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            D R++VA+SGG DS +    +L R GY+  G+ + L    + SKR             R
Sbjct: 46  HDDRILVAVSGGKDS-LAIWDVLLRLGYEAHGLYIDL-GIGEYSKRST--------EKVR 95

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           R  +       V   EE +    +     +  AG         N+   F+         G
Sbjct: 96  RFAEERGAVLRVVSVEEEYG---LGTTELARKAGRPACSACGLNKRYLFN---REALAGG 149

Query: 138 ADVLATGHYI--RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
            DV+ TGH +   +   +G+      ++         Q+  L A+    +  ++ PL  +
Sbjct: 150 YDVIVTGHNLDDEAATLLGN------VLHWNTGYLARQAPVLEASAPNLVKKVK-PLYRL 202

Query: 196 KKESVRDLAREMGLD--IADKSDSQDICFVQQGKYFDVVKRINAGI 239
            +  +   A   G+D  + +   ++    +Q     + ++ ++ G 
Sbjct: 203 TEREIASYAVLRGIDYIVEECPMAKGAKSIQYKHILNQLEELSPGA 248


>gi|302390017|ref|YP_003825838.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermosediminibacter oceani DSM 16646]
 gi|302200645|gb|ADL08215.1| thiamine biosynthesis/tRNA modification protein ThiI
           [Thermosediminibacter oceani DSM 16646]
          Length = 389

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + + V+ +SGG+DS V   ++ + G ++  V    +       ++              +
Sbjct: 174 NGKAVLLLSGGIDSPVAGYMVMKRGVEIEPVYFHSFPFTSDRAKEK----------VVEL 223

Query: 80  CDTI-----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVT 133
           C  +      +  +V ++ +  +              + P   +    R +       + 
Sbjct: 224 CRVLSGYSGKIRLHVVNFTDVLKE----------LGEKGPNELLTILMRRMMVRISQEIA 273

Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193
           +++GA  L TG  I        +      +    ++     Y               PL 
Sbjct: 274 KKIGAKALVTGESIGQVASQTMEA-----LMATNEVAELPVYR--------------PLI 314

Query: 194 DMKKESVRDLAREMG 208
              K  + +LA+ +G
Sbjct: 315 GFDKVEIIELAKRIG 329


>gi|283851129|ref|ZP_06368413.1| argininosuccinate synthase [Desulfovibrio sp. FW1012B]
 gi|283573525|gb|EFC21501.1| argininosuccinate synthase [Desulfovibrio sp. FW1012B]
          Length = 398

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+SV+   +K+    +V+ VT  L    +    +           A + 
Sbjct: 5   KKVVLAYSGGLDTSVILKWIKKTYACEVVTVTCDLGQEEELDGLEDKALRTG----ATKA 60

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDLLSV 132
                   Y+ D  E F    I P   +       Y  G +    +   R      L+ V
Sbjct: 61  --------YIDDLREEFAKDFIFPMLRAGAVYEGRYLLGTSIARPLIAKR------LVEV 106

Query: 133 TRQLGADVLATG 144
            R  GA  +A G
Sbjct: 107 ARAEGAQAVAHG 118


>gi|265764278|ref|ZP_06092846.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           2_1_16]
 gi|263256886|gb|EEZ28232.1| asparagine synthase (glutamine-hydrolyzing) [Bacteroides sp.
           2_1_16]
          Length = 558

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 236 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 288

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 289 REVAEYIGTVHHEINYTLQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 347

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                    ++    L       +R +  +  ++   +     L  ++S   +  
Sbjct: 348 MVLSGEGADEIFGGYLYFHKAPDARAFHEETVRKLSKLHLYDCLRANKSLAAWGV 402


>gi|251790662|ref|YP_003005383.1| thiamine biosynthesis protein ThiI [Dickeya zeae Ech1591]
 gi|247539283|gb|ACT07904.1| thiamine biosynthesis/tRNA modification protein ThiI [Dickeya zeae
           Ech1591]
          Length = 482

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 39/189 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G           R+V   
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNL---GGAAHEIG----------VRQVAHY 226

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +       +   +       V+         G+  +      + +       +  + G +
Sbjct: 227 LWNRFGSSHRVRFVAIDFEPVVGEILEKVDDGQMGVVL----KRMMVRAASRIAERYGVE 282

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L TG  +      G    +     R +D   D               +  PL    KE 
Sbjct: 283 ALVTGEAL------GQVSSQTLTNLRLIDNASD-------------TLILRPLISHDKEH 323

Query: 200 VRDLAREMG 208
           +  LARE+G
Sbjct: 324 IIRLARELG 332


>gi|241663744|ref|YP_002982104.1| NAD synthetase [Ralstonia pickettii 12D]
 gi|240865771|gb|ACS63432.1| NAD+ synthetase [Ralstonia pickettii 12D]
          Length = 545

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +SGGVDS++V A+     G D V  V +                A     DAR +  
Sbjct: 292 IIGLSGGVDSALVLAIAVDALGADRVRAVMM-----------PSRYTADISWVDARDMAA 340

Query: 82  TINVSHYVFDYEERF 96
            + V +        F
Sbjct: 341 RLGVQYDEIAISPMF 355


>gi|225575090|ref|ZP_03783700.1| hypothetical protein RUMHYD_03179 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037649|gb|EEG47895.1| hypothetical protein RUMHYD_03179 [Blautia hydrogenotrophica DSM
           10507]
          Length = 409

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 32/134 (23%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK +  Y+VI   +              C  G+++     
Sbjct: 4   KVILAYSGGLD--TTAIIPWLKENFDYEVICCCI-------------DCGQGEELDGLEE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
                     Y+ +  + F +  I+P         + Y  G +        R V    L+
Sbjct: 49  RAKLSGASKLYIENIIDEFCDDYIMPCVKAGAVYENKYLLGTSMA------RPVIAKKLV 102

Query: 131 SVTRQLGADVLATG 144
            + R+ GA  +  G
Sbjct: 103 EIARKEGASAICHG 116


>gi|163868125|ref|YP_001609329.1| NAD synthetase [Bartonella tribocorum CIP 105476]
 gi|161017776|emb|CAK01334.1| NH3-dependent NAD synthetase [Bartonella tribocorum CIP 105476]
          Length = 553

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 47/242 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G + V  + +                + + + DA+   
Sbjct: 288 VILGLSGGIDSALCAAMAVDALGAERVRTIMM-----------PYHYTSQESLKDAKECA 336

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC----------NRTVKFSDLL 130
           D +   + +    +      +  F        T  P                 ++ + L+
Sbjct: 337 DLLGCRYEIIPIAQP-----VEAFL------NTMAPVFLGLSSDVTEENLQSRIRGTLLM 385

Query: 131 SVTRQLGADVLATGHYIRS----RLYVGDDGKRRRIMCRPMDLERDQSYFLFA-TTQQQL 185
           +++ + G+ V+ TG+            GD       +    D+ + Q Y L     +  L
Sbjct: 386 ALSNKFGSMVVTTGNKSEMAVGYATLYGDMNGGFNPLK---DIYKMQVYALADWRNKNYL 442

Query: 186 CDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244
             L+ P G +   ++   A    L +     DS            D+++ +       GD
Sbjct: 443 HHLKGPEGIVIPSNIIKKAPSAELRENQKDEDS----LPPYPILDDILQSLVENDMSIGD 498

Query: 245 IV 246
           IV
Sbjct: 499 IV 500


>gi|330950662|gb|EGH50922.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae Cit 7]
          Length = 394

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 48/207 (23%)

Query: 25  VAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-----RR 78
           V  SGG+DS+V+  LL    G +    TL       A          Q   DA     ++
Sbjct: 30  VGFSGGLDSTVLLHLLAELAGRE----TL------PALNAIHVHHGLQTAADAWPEHCQQ 79

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           VC T+ V+      +       + P AS   A              ++       R+   
Sbjct: 80  VCKTLGVAFESVRVQ-------VEPAASLEQAARQA----------RYGAFTERLRE--- 119

Query: 139 DVLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQL--CDLRFPLGDM 195
                G  + +  +  D  +     + R   +            Q+ L    L  PL D+
Sbjct: 120 -----GEVLLTGQHRDDQAETLLFRLLRGAGVR----GLAAMPDQRVLGRGHLLRPLLDV 170

Query: 196 KKESVRDLAREMGLDIADKSDSQDICF 222
            +  + D AR  GL+  +   + D  F
Sbjct: 171 SRMQLEDYARRHGLNWIEDPSNDDQQF 197


>gi|325293042|ref|YP_004278906.1| NH3-dependent NAD synthetase [Agrobacterium sp. H13-3]
 gi|325060895|gb|ADY64586.1| NH3-dependent NAD synthetase [Agrobacterium sp. H13-3]
          Length = 559

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++ AAL     G + V  + L                +   + DA    
Sbjct: 295 VVLGLSGGIDSAICAALAVDALGEERVRCIML-----------PYRYTSEDSLKDAADCA 343

Query: 81  DTINVSHYVFDYEE 94
             +   + +    E
Sbjct: 344 RALGCRYDIVPIAE 357


>gi|325953943|ref|YP_004237603.1| argininosuccinate synthase [Weeksella virosa DSM 16922]
 gi|323436561|gb|ADX67025.1| argininosuccinate synthase [Weeksella virosa DSM 16922]
          Length = 393

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 28/173 (16%)

Query: 21  MRVVVAMSGGVDSSVVAA-LLKRDG---YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
            + V+A SGG+D+S     L +  G   + VI                    + +++ + 
Sbjct: 3   KKAVLAYSGGLDTSYCLVNLTQEQGMEMHTVI--------------VNTGGFSKEELKEI 48

Query: 77  RRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTR 134
            +    +    H   D  E++    I              P  V   R  +   +    +
Sbjct: 49  EKRAYELGSAKHVTIDITEKYFTDCIRFLIYGNVLKNNTYPLSVSAERMFQSIAIAEYAK 108

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
           ++ A+ +  G         G+D + R  +   +     QS  +     ++L  
Sbjct: 109 EIDAEYIVHG-----STGAGND-QIRFDLAFAVISP--QSKIITPIRDEKLSR 153


>gi|323494472|ref|ZP_08099578.1| argininosuccinate synthase [Vibrio brasiliensis LMG 20546]
 gi|323311295|gb|EGA64453.1| argininosuccinate synthase [Vibrio brasiliensis LMG 20546]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 25/131 (19%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVVA SGG+D+SV+   LK             Y+    +         +++        
Sbjct: 8   KVVVAYSGGLDTSVIIPWLKE-----------NYDCEVVAFVADVGQGEEELEGIEAKAK 56

Query: 82  TINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
                  Y+ D +E      I P           Y  G +    +     V       V 
Sbjct: 57  ASGASECYIADLKEEMVADYIYPTLKTGAYYEGKYLLGTSMARPIIAKAQV------EVA 110

Query: 134 RQLGADVLATG 144
           R++GAD L  G
Sbjct: 111 RKVGADALCHG 121


>gi|153815236|ref|ZP_01967904.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756]
 gi|317502308|ref|ZP_07960477.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847495|gb|EDK24413.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756]
 gi|316896264|gb|EFV18366.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 23  VVVAMSGGVDSSVVAAL----LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           V+  +SGG DS V   L    L+   G++V             +       A  D    +
Sbjct: 29  VIAGVSGGADS-VCLLLTLCSLREKFGFEVKVCH--------VNHCLRGAAADADEEYVK 79

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
           ++C  + V   V      FR  V         A +    C +  R V+      +  + G
Sbjct: 80  KLCGELGVECRV------FRKEV------ELIAEKRKQSCEEAGREVRREAFEQMCAENG 127

Query: 138 ADVLATGHY----IRSRLYVGDDGKRRRIMC 164
              +AT H+      + L     G   R +C
Sbjct: 128 GTKIATAHHRDDQAETVLLNIARGTGIRGLC 158


>gi|308801447|ref|XP_003078037.1| asparagine synthetase (ISS) [Ostreococcus tauri]
 gi|116056488|emb|CAL52777.1| asparagine synthetase (ISS) [Ostreococcus tauri]
          Length = 649

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 30/156 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD--------GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            V +SGG+DSS++ ++  R         G D                         D+  
Sbjct: 259 AVLLSGGLDSSLITSIAVRQRKLAKNTYGAD-----------EPVHSFSIGIKGAPDLVA 307

Query: 76  ARRVCDTINVSHYVFDYEERFR----NAVIVPFASSYAAGETPLPCVDCNRTVK---FSD 128
           AR+V + +   H+   +           VI     ++      +P    +R +K   F  
Sbjct: 308 ARKVAEQLGTIHHEVHFTPEEALDALPDVIWH-LETFEQVRASVPMYLLSRHIKSLGFKM 366

Query: 129 LL--SVTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162
           +L      +L    L   H   +      + +R+ +
Sbjct: 367 VLSGEGADELFGGYLYF-HKAPNPTEFHAECRRKTM 401


>gi|110816246|sp|Q4FTN4|QUEC_PSYA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
          Length = 259

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 1  MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
          +  S A + N   L++  K    VV +SGG+DS       K     V  V          
Sbjct: 6  LPTSSADQENDTQLNELHKSQNAVVLLSGGLDSVTCLYWAKARYASVTAV---------- 55

Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
          S   G     + +  A+ + +T  V+H + D
Sbjct: 56 SFDYGQRHNSELIA-AKAIAETAGVNHRIID 85


>gi|71065331|ref|YP_264058.1| ExsB family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038316|gb|AAZ18624.1| probable ExsB protein [Psychrobacter arcticus 273-4]
          Length = 285

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           +  S A + N   L++  K    VV +SGG+DS       K     V  V          
Sbjct: 32  LPTSSADQENDTQLNELHKSQNAVVLLSGGLDSVTCLYWAKARYASVTAV---------- 81

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91
           S   G     + +  A+ + +T  V+H + D
Sbjct: 82  SFDYGQRHNSELIA-AKAIAETAGVNHRIID 111


>gi|301311530|ref|ZP_07217457.1| PP-loop family protein [Bacteroides sp. 20_3]
 gi|300830616|gb|EFK61259.1| PP-loop family protein [Bacteroides sp. 20_3]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R++V +SGG DS  +  LL R        ++V+   + + N          C    D   
Sbjct: 33  RILVGLSGGKDSLALVDLLGRRSKIYCPRFEVVVAHIVMTNIP-------YC---SDREY 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R   +  ++   V             P   +  +     PC  C+   +   L  + + 
Sbjct: 83  LRSCAEEHDLPFIV-------HETSFDPSTDTRKS-----PCFLCS-WTRRKALFEIAKA 129

Query: 136 LGADVLATGHY 146
              + +A GH+
Sbjct: 130 HKCNKIALGHH 140


>gi|300432594|gb|ADK13052.1| asparagine synthetase [Pinus pinaster]
          Length = 590

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 18/111 (16%)

Query: 25  VAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V +SGG+DSS+VAA+  R   G +V     + + ++  +   G   +  D+  AR V D 
Sbjct: 230 VLLSGGLDSSLVAAVASRYLAGTEVA----RQWGAKLHTFCIGLQGSP-DLKAAREVADY 284

Query: 83  INVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPCVDCNRTVK 125
           ++  H+ F++  +        VI     +Y        TP+     +R +K
Sbjct: 285 LDSFHHEFNFTVQEGIDAIEEVI-YHIETYDVTTIRASTPM--FLMSRKIK 332


>gi|298375982|ref|ZP_06985938.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298267019|gb|EFI08676.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R++V +SGG DS  +  LL R        ++V+   + + N          C    D   
Sbjct: 33  RILVGLSGGKDSLALVDLLGRRSKIYCPRFEVVVAHIVMTNIP-------YC---SDREY 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R   +  ++   V             P   +  +     PC  C+   +   L  + + 
Sbjct: 83  LRSCAEEHDLPFIV-------HETSFDPSTDTRKS-----PCFLCS-WTRRKALFEIAKA 129

Query: 136 LGADVLATGHY 146
              + +A GH+
Sbjct: 130 HKCNKIALGHH 140


>gi|282860306|ref|ZP_06269375.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010]
 gi|282586903|gb|EFB92139.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010]
          Length = 455

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 22/128 (17%)

Query: 20  DMRVVVAMSGGVDSSVVAAL-LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           + R +VA+SGG DS V   L L + GY V           + S R    C          
Sbjct: 18  NRRYLVALSGGADS-VCLLLILHKLGYAVEAAHCNFKLRGEESNRDEQFCID-------- 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C   N+  ++  +               Y A    +      R +++     + R + A
Sbjct: 69  LCKRQNIKIHLIHF-----------DTREY-AALKKISIEMAARDLRYRYFEQLCRDIDA 116

Query: 139 DVLATGHY 146
             +  GH+
Sbjct: 117 AGICVGHH 124


>gi|262383605|ref|ZP_06076741.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294503|gb|EEY82435.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R++V +SGG DS  +  LL R        ++V+   + + N          C    D   
Sbjct: 33  RILVGLSGGKDSLALVDLLGRRSKIYCPRFEVVVAHIVMTNIP-------YC---SDREY 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R   +  ++   V             P   +  +     PC  C+   +   L  + + 
Sbjct: 83  LRSCAEEHDLPFIV-------HETSFDPSTDTRKS-----PCFLCS-WTRRKALFEIAKA 129

Query: 136 LGADVLATGHY 146
              + +A GH+
Sbjct: 130 HKCNKIALGHH 140


>gi|150008723|ref|YP_001303466.1| hypothetical protein BDI_2113 [Parabacteroides distasonis ATCC
           8503]
 gi|255014521|ref|ZP_05286647.1| hypothetical protein B2_11474 [Bacteroides sp. 2_1_7]
 gi|256841242|ref|ZP_05546749.1| tRNA(Ile)-lysidine synthetase [Parabacteroides sp. D13]
 gi|149937147|gb|ABR43844.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737085|gb|EEU50412.1| tRNA(Ile)-lysidine synthetase [Parabacteroides sp. D13]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           R++V +SGG DS  +  LL R        ++V+   + + N          C    D   
Sbjct: 33  RILVGLSGGKDSLALVDLLGRRSKIYCPRFEVVVAHIVMTNIP-------YC---SDREY 82

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
            R   +  ++   V             P   +  +     PC  C+   +   L  + + 
Sbjct: 83  LRSCAEEHDLPFIV-------HETSFDPSTDTRKS-----PCFLCS-WTRRKALFEIAKA 129

Query: 136 LGADVLATGHY 146
              + +A GH+
Sbjct: 130 HKCNKIALGHH 140


>gi|60682137|ref|YP_212281.1| asparagine synthetase B [Bacteroides fragilis NCTC 9343]
 gi|60493571|emb|CAH08360.1| asparagine synthetase B [glutamine-hydrolyzing] [Bacteroides
           fragilis NCTC 9343]
          Length = 558

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 236 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 288

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 289 REVAEYIGTVHHEINYTLQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 347

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                    ++    L       +R +  +  ++   +     L  ++S   +  
Sbjct: 348 MVLSGEGADEIFGGYLYFHKAPDARAFHEETVRKLSKLHLYDCLRANKSLAAWGV 402


>gi|20808759|ref|NP_623930.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|61217386|sp|Q8R7K9|TILS_THETN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|20517403|gb|AAM25534.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 467

 Score = 41.3 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVI-----GVTLQLYNSRKASKRKGSCCAGQDV 73
           KD ++V+ +SGG DS     +L     DV+        L+LY        +G   A +D 
Sbjct: 26  KDDKIVMGISGGPDS---LCML-----DVLFNLKGKFNLKLYVVHVNHMIRGE-DAKKDA 76

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
               ++C  +++  +       F   +       Y A +  L      R V++       
Sbjct: 77  EFVEKLCKDLDLPFF------LFEENI------PYLAKKMGLSEEQAGRYVRYKAFEETL 124

Query: 134 RQLGADVLATGH 145
           +++G + +A  H
Sbjct: 125 KRVGGNKIAVAH 136


>gi|326526129|dbj|BAJ93241.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 461

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 58/189 (30%), Gaps = 25/189 (13%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           D  V+ A+SGGVDS+V A L+    G  +  V +     R   + +       D      
Sbjct: 235 DEHVICALSGGVDSTVAATLVHNAIGDRLHCVFVDNGLLRYKEQERVMSTFNSD------ 288

Query: 79  VCDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               +++     D  E+F +    V  P       G   +   D      F+ +L     
Sbjct: 289 ----LHLPVTCIDASEKFLSELKGVKDPETKRKIIGREFIVVFDE-----FARMLEQKLG 339

Query: 136 LGADVLATGH-YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
              + L  G  Y          G  R                +    +     L  PL  
Sbjct: 340 KRPEYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-----VGGLPKDMKLKLIEPLKL 394

Query: 195 MKKESVRDL 203
           + K+ VR L
Sbjct: 395 LFKDEVRKL 403


>gi|91070585|gb|ABE11485.1| argininosuccinate synthase [uncultured Prochlorococcus marinus
           clone HOT0M-8F9]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGGVD+SV    LK +           Y   +          G+D+   R+  
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKNE-----------YGISEVVTFVADLGQGEDLELIRQKA 53

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                S  +  +    F      P   + A      P      R +   +L+++ R++ A
Sbjct: 54  LNSGASKSIVGNLVNSFVERYAFPAIRANALYLDKYPLSTALARPLIAENLVNIAREINA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|159904385|ref|YP_001551729.1| argininosuccinate synthase [Prochlorococcus marinus str. MIT 9211]
 gi|229889894|sp|A9BDR3|ASSY_PROM4 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|159889561|gb|ABX09775.1| Argininosuccinate synthase [Prochlorococcus marinus str. MIT 9211]
          Length = 400

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 61/204 (29%), Gaps = 41/204 (20%)

Query: 21  MRVVVAMSGGVD-SSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGGVD SS +  L+   G  +V+                     G ++   R 
Sbjct: 4   KKVVLAYSGGVDTSSCIPYLINEYGVEEVVAF-------------AADLGQGDELEPIRE 50

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136
              +       V D  + F      P   + A  E   P      R +    L+ + ++L
Sbjct: 51  KALSAGASECLVDDLVKPFIEDFAFPAIRANALYEGKYPLSTALARPLISKRLVDIAKEL 110

Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF-LFATTQQQLCDLRFPL--G 193
            AD +A G                   C       DQ  F +   T      +  P    
Sbjct: 111 EADAVAHG-------------------CTGK--GNDQVRFDIAIATLAPELKVLTPARQW 149

Query: 194 DMKKESVRDLAREMGLDIADKSDS 217
            M +E V       G+       S
Sbjct: 150 GMSREEVIAYGERYGIPAPVSKKS 173


>gi|189500742|ref|YP_001960212.1| NAD synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692258|sp|B3ELE3|NADE_CHLPB RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|189496183|gb|ACE04731.1| NAD+ synthetase [Chlorobium phaeobacteroides BS1]
          Length = 277

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 44/187 (23%)

Query: 26  AMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
            +SGG+DS+VV  L KR  G + V+ V +                + + V DAR + +  
Sbjct: 36  GLSGGIDSAVVCELAKRALGPENVLAVLM-----------PYRTSSPESVNDARLMVEKT 84

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
            V     +        V+  F    +              ++  ++++  R L    L  
Sbjct: 85  GVRSEEVEI-----TGVVDAFFDGVSGAGN----------LRMGNVMARARML---YLYD 126

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
                 RL +G   K   ++              + T    +     P+GD+ K  +  L
Sbjct: 127 ISARDGRLVIGTSNKTELLL-------------GYGTLFGDMASAVNPIGDLYKTQLWGL 173

Query: 204 AREMGLD 210
           AR + + 
Sbjct: 174 ARHLQIP 180


>gi|312173828|emb|CBX82082.1| putative asparagine synthetase B2 [Erwinia amylovora ATCC BAA-2158]
          Length = 510

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 16/77 (20%)

Query: 18  PKDMRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDV 73
           P+   +   M SGGVDSS     L           ++  +       +       +  D 
Sbjct: 204 PRKGEIAACMLSGGVDSS-SILTL-----------MRNLHEGPVVAYTFYNKDASSSDDY 251

Query: 74  YDARRVCDTINVSHYVF 90
             A+ +C+ ++V   V 
Sbjct: 252 EAAKIICEHLDVPLRVV 268


>gi|292489653|ref|YP_003532543.1| putative asparagine synthetase B2 [Erwinia amylovora CFBP1430]
 gi|292898133|ref|YP_003537502.1| asparagine synthetase [Erwinia amylovora ATCC 49946]
 gi|291197981|emb|CBJ45083.1| putative asparagine synthetase [Erwinia amylovora ATCC 49946]
 gi|291555090|emb|CBA23208.1| putative asparagine synthetase B2 [Erwinia amylovora CFBP1430]
          Length = 529

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 16/77 (20%)

Query: 18  PKDMRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDV 73
           P+   +   M SGGVDSS     L           ++  +       +       +  D 
Sbjct: 223 PRKGEIAACMLSGGVDSS-SILTL-----------MRNLHEGPVVAYTFYNKDASSSDDY 270

Query: 74  YDARRVCDTINVSHYVF 90
             A+ +C+ ++V   V 
Sbjct: 271 EAAKIICEHLDVPLRVV 287


>gi|253567076|ref|ZP_04844527.1| asparagine synthetase B [Bacteroides sp. 3_2_5]
 gi|251944200|gb|EES84709.1| asparagine synthetase B [Bacteroides sp. 3_2_5]
          Length = 558

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 236 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 288

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 289 REVAEYIGTVHHEINYTLQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 347

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
                    ++    L       +R +  +  ++   +     L  ++S   +  
Sbjct: 348 MVLSGEGADEIFGGYLYFHKAPDARAFHEETVRKLSKLHLYDCLRANKSLAAWGV 402


>gi|255100922|ref|ZP_05329899.1| argininosuccinate synthase [Clostridium difficile QCD-63q42]
          Length = 399

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S++   LK             Y         G+      + D      
Sbjct: 4   KVVLAYSGGLDTSIIIPWLKE-----------NYEDIDVIAVCGNVGQEDKMEDVYEKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                  YV D  E F    I     + A  E          R +    L+ V  + GA 
Sbjct: 53  QSGASKAYVDDISEEFVTETIFKAVKAEAKYEGKYLLGTSLARPIIAKKLVEVAHKEGAK 112

Query: 140 VLATG 144
            +  G
Sbjct: 113 YICHG 117


>gi|118594348|ref|ZP_01551695.1| hypothetical protein MB2181_01730 [Methylophilales bacterium
          HTCC2181]
 gi|118440126|gb|EAV46753.1| hypothetical protein MB2181_01730 [Methylophilales bacterium
          HTCC2181]
          Length = 228

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 16/77 (20%)

Query: 20 DMRV----VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
            +V    V+ +SGG+DS+ V A+ K +GY    + +  Y  R             ++  
Sbjct: 2  KKKVSKSAVILLSGGLDSATVLAIAKAEGYQCYAMNI-NYQQR----------HSAELKY 50

Query: 76 ARRVCDTINVSHY-VFD 91
          A+R+    +V  Y V D
Sbjct: 51 AKRLAHHYDVEEYKVVD 67


>gi|111220611|ref|YP_711405.1| GMP synthase [Frankia alni ACN14a]
 gi|111148143|emb|CAJ59812.1| GMP synthetase (glutamine aminotransferase) [Frankia alni ACN14a]
          Length = 562

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD 43
           R++  +SGGVDS+V AAL+ R 
Sbjct: 260 RLICGLSGGVDSAVAAALVHRA 281


>gi|86750492|ref|YP_486988.1| NAD synthetase [Rhodopseudomonas palustris HaA2]
 gi|86573520|gb|ABD08077.1| NH(3)-dependent NAD(+) synthetase [Rhodopseudomonas palustris HaA2]
          Length = 585

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKR---DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V++ +SGG+DS++ AA+       G  V GV L                A   + DA R+
Sbjct: 296 VLLGISGGIDSALCAAIAVDALGAG-RVRGVML-----------PFRYTAQISLDDASRL 343

Query: 80  CDTINVSHYVF 90
            + +   + V 
Sbjct: 344 ANALGFGYEVL 354


>gi|326564201|gb|EGE14437.1| ExsB family protein [Moraxella catarrhalis 12P80B1]
 gi|326565800|gb|EGE15962.1| ExsB family protein [Moraxella catarrhalis BC1]
 gi|326571136|gb|EGE21160.1| ExsB family protein [Moraxella catarrhalis BC7]
 gi|326575674|gb|EGE25597.1| ExsB family protein [Moraxella catarrhalis CO72]
 gi|326577140|gb|EGE27034.1| ExsB family protein [Moraxella catarrhalis O35E]
          Length = 232

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +   VV  SGG+DS+      K     V  V          S   G      +++ A+
Sbjct: 2  NNNQNAVVLFSGGLDSTTCLYWAKSQFKTVTAV----------SFCYGQ-RHSSELHAAQ 50

Query: 78 RVCDTINVSHYVFD 91
           +   ++V H+V D
Sbjct: 51 NIAKKLSVRHHVID 64


>gi|296113092|ref|YP_003627030.1| ExsB family protein [Moraxella catarrhalis RH4]
 gi|295920786|gb|ADG61137.1| ExsB family protein [Moraxella catarrhalis RH4]
 gi|326560085|gb|EGE10475.1| ExsB family protein [Moraxella catarrhalis 46P47B1]
 gi|326560468|gb|EGE10850.1| ExsB family protein [Moraxella catarrhalis 7169]
 gi|326561671|gb|EGE12008.1| ExsB family protein [Moraxella catarrhalis 103P14B1]
 gi|326570453|gb|EGE20493.1| ExsB family protein [Moraxella catarrhalis BC8]
 gi|326573430|gb|EGE23398.1| ExsB family protein [Moraxella catarrhalis 101P30B1]
          Length = 232

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            +   VV  SGG+DS+      K     V  V          S   G      +++ A+
Sbjct: 2  NNNQNAVVLFSGGLDSTTCLYWAKSQFKTVTAV----------SFCYGQ-RHSSELHAAQ 50

Query: 78 RVCDTINVSHYVFD 91
           +   ++V H+V D
Sbjct: 51 NIAKKLSVRHHVID 64


>gi|257076391|ref|ZP_05570752.1| argininosuccinate synthase [Ferroplasma acidarmanus fer1]
          Length = 413

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 22  RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           +V++  SGG+D+SV+A  + K    +V+ +TL + NS     ++ +   G  V DA    
Sbjct: 20  KVLLLYSGGLDTSVMAKWIQKEMKKEVVTLTLNIGNSNLQKIKEKA--LGLGVSDA---- 73

Query: 81  DTINVSHYVFDYEERFRNAVIV---PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
                   V D +  F    I         Y     PL        +    +L    + G
Sbjct: 74  -------IVLDVKNEFSEKYIAKEIYADGMYEGY--PLSTAIARPLMAEKAVL-YAEEYG 123

Query: 138 ADVLATG 144
            + +A G
Sbjct: 124 CNTIAHG 130


>gi|150400476|ref|YP_001324242.1| ExsB family protein [Methanococcus aeolicus Nankai-3]
 gi|150013179|gb|ABR55630.1| ExsB family protein [Methanococcus aeolicus Nankai-3]
          Length = 257

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 37/168 (22%)

Query: 17  NPKDMRVVVAMSGGVD---SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
           N      +VA SGGVD   S+V+A+ L    +++IG+T                    + 
Sbjct: 56  NNTKQTAIVAFSGGVDSTASTVIASKL----FNIIGIT----------AYSDIIMHPDNK 101

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL----PCVDCNRTVKFSDL 129
            +   +   + + H   D              +    G T      PC  C+ TV+ S +
Sbjct: 102 KNISNLAKKLKIRHEFLDI-----------DLNEVLKG-TVNGKYHPCGRCHTTVE-SAV 148

Query: 130 LSVTRQLGADVLATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQS 174
           L+   +     +  G  +   +  +    +   R  M   + L +++S
Sbjct: 149 LNYALENNIKYIIYGDMLSVGQLSIIRNKNNIVRINMPSFLCLTKNES 196


>gi|126697236|ref|YP_001092122.1| argininosuccinate synthase [Prochlorococcus marinus str. MIT 9301]
 gi|166221002|sp|A3PFJ6|ASSY_PROM0 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|126544279|gb|ABO18521.1| Argininosuccinate synthase [Prochlorococcus marinus str. MIT 9301]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGGVD+SV    LK++ Y V           +          G+D+   R+  
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKKE-YGV----------SEVVTFVADLGQGEDLELIRQKA 53

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                S  +  +    F      P   + A      P      R +   +L+++ R++ A
Sbjct: 54  LNSGASQSIVGNLVNSFVERYAFPAIRANALYLDKYPLSTALARPLIAENLVNIAREISA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|186477640|ref|YP_001859110.1| C32 tRNA thiolase [Burkholderia phymatum STM815]
 gi|205830570|sp|B2JIL8|TTCA_BURP8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|184194099|gb|ACC72064.1| PP-loop domain protein [Burkholderia phymatum STM815]
          Length = 336

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 13  DLDKNPKDMRVVVAMSGGVDS-SV--VAALLKRD---GYDVIGVTLQLYNSRKASKRKGS 66
           D +      +V+V +SGG DS ++  V   L+      +D++ V L      +       
Sbjct: 60  DFNMIEDGDKVMVCLSGGKDSYAMLDVLMRLRERAPIHFDIVAVNL-----DQKQPGFPE 114

Query: 67  CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126
               + +         +++ +++ + ++ +   ++         G+T   C  C+R ++ 
Sbjct: 115 HVLPEYLS-------KLDIPYHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LRR 158

Query: 127 SDLLSVTRQLGADVLATGHY 146
             L  V  +LGA  +A GH+
Sbjct: 159 GILYRVAGELGATKIALGHH 178


>gi|53804444|ref|YP_113697.1| exsB protein [Methylococcus capsulatus str. Bath]
 gi|81682290|sp|Q609K0|QUEC_METCA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|53758205|gb|AAU92496.1| exsB protein [Methylococcus capsulatus str. Bath]
          Length = 223

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 12/68 (17%)

Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
          VV +SGG+DS+   A+ +R+G+    +      S    +R G+     ++  ARR+  ++
Sbjct: 5  VVLLSGGLDSATTLAIARREGFACHAM------SFDYGQRHGA-----ELKAARRLAQSL 53

Query: 84 N-VSHYVF 90
            + H   
Sbjct: 54 GAIEHKTV 61


>gi|255655804|ref|ZP_05401213.1| argininosuccinate synthase [Clostridium difficile QCD-23m63]
 gi|296450958|ref|ZP_06892705.1| argininosuccinate synthase [Clostridium difficile NAP08]
 gi|296879076|ref|ZP_06903072.1| argininosuccinate synthase [Clostridium difficile NAP07]
 gi|296260176|gb|EFH07024.1| argininosuccinate synthase [Clostridium difficile NAP08]
 gi|296429949|gb|EFH15800.1| argininosuccinate synthase [Clostridium difficile NAP07]
          Length = 399

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S++   LK             Y         G+      + D      
Sbjct: 4   KVVLAYSGGLDTSIIIPWLKE-----------NYEDIDVIAVCGNVGQEDKMEDVYEKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                  YV D  E F    I     + A  E          R +    L+ V  + GA 
Sbjct: 53  QSGASKAYVDDISEEFVTETIFKAVKAEAKYEGKYLLGTSLARPIIAKKLVEVAHKEGAK 112

Query: 140 VLATG 144
            +  G
Sbjct: 113 YICHG 117


>gi|90407118|ref|ZP_01215307.1| argininosuccinate synthase [Psychromonas sp. CNPT3]
 gi|90311840|gb|EAS39936.1| argininosuccinate synthase [Psychromonas sp. CNPT3]
          Length = 403

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 21  MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            +VV+A SGG+D+S +   LK    G +VI           A   +GS         A  
Sbjct: 5   KKVVLAYSGGLDTSAIIPWLKETYKGCEVIAF--------CADVGQGSQELLGLEEKALA 56

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLG 137
              +     ++ D ++ F    I P  ++ A  E          R +     + +  Q+G
Sbjct: 57  SGAS---ECHIVDLKDEFVADYIYPSIATNAIYEGAYLLGTAMARPIIAKAQVELALQVG 113

Query: 138 ADVLATG 144
           AD L  G
Sbjct: 114 ADALCHG 120


>gi|15888965|ref|NP_354646.1| NAD synthetase [Agrobacterium tumefaciens str. C58]
 gi|15156746|gb|AAK87431.1| NAD (+) synthetase [Agrobacterium tumefaciens str. C58]
          Length = 559

 Score = 41.3 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VV+ +SGG+DS++ AAL     G + V  + L                + + + DA    
Sbjct: 295 VVLGLSGGIDSAICAALAVDALGEERVRCIML-----------PYRYTSEESLKDAADCA 343

Query: 81  DTINVSHYVFDYEE 94
             +   + +    E
Sbjct: 344 RALGCRYDIVPIVE 357


>gi|310821522|ref|YP_003953880.1| asparagine synthase [Stigmatella aurantiaca DW4/3-1]
 gi|309394594|gb|ADO72053.1| Asparagine synthase, glutamine-hydrolyzing [Stigmatella aurantiaca
           DW4/3-1]
          Length = 582

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 16  KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +   D  V + +SGGVDSS++AALL + G           +    +          D+  
Sbjct: 249 QWVADHPVGIFLSGGVDSSLLAALLAQGG-----------SREIHTFSLADDPTLPDLAV 297

Query: 76  ARRVCDTINVSHYVFDYE 93
           +RR+ + +   H+ + +E
Sbjct: 298 SRRLSEALGTHHHEYSFE 315


>gi|270265161|ref|ZP_06193423.1| argininosuccinate synthase [Serratia odorifera 4Rx13]
 gi|270040795|gb|EFA13897.1| argininosuccinate synthase [Serratia odorifera 4Rx13]
          Length = 406

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK +  G +V+     +   R   +        + +     
Sbjct: 7   KKIVLAYSGGLDTSAIIPWLKENYGGCEVVAFVADIGQERSDLEG----VEQKALQSGAS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            C       +V D  E F    + P          SY  G +    +     V       
Sbjct: 63  EC-------HVVDLREEFIRDYVYPVLQTGALYEGSYLLGTSMARPIIAKAQV------E 109

Query: 132 VTRQLGADVLATG 144
           +  ++GAD L  G
Sbjct: 110 LALKVGADALCHG 122


>gi|255320379|ref|ZP_05361563.1| argininosuccinate synthase [Acinetobacter radioresistens SK82]
 gi|262379339|ref|ZP_06072495.1| argininosuccinate synthase [Acinetobacter radioresistens SH164]
 gi|255302574|gb|EET81807.1| argininosuccinate synthase [Acinetobacter radioresistens SK82]
 gi|262298796|gb|EEY86709.1| argininosuccinate synthase [Acinetobacter radioresistens SH164]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           ++    + 
Sbjct: 63 AENYGAVKA 71


>gi|213609353|ref|ZP_03369179.1| thiamine biosynthesis protein ThiI [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 300

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 57/185 (30%), Gaps = 39/185 (21%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGG DSSV + +L R G  V      L     A+   G           R+V   +   
Sbjct: 2   ISGGFDSSVSSYMLMRRGCRVHYCFFNL---GGAAHEIG----------VRQVAHYLWNR 48

Query: 87  H---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143
               +   +       V+         G+  +      + +       V  + G   L T
Sbjct: 49  FGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVL----KRMMVRAASKVAERYGVQALVT 104

Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203
           G  +      G    +     R +D   D               +  PL    KE + +L
Sbjct: 105 GEAL------GQVSSQTLTNLRLIDNVSD-------------TLILRPLISYDKEHIINL 145

Query: 204 AREMG 208
           AR++G
Sbjct: 146 ARQIG 150


>gi|197318139|gb|ACH67409.1| argininosuccinate synthetase [Opsanus beta]
          Length = 220

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 29/114 (25%)

Query: 40  LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV-SHYVFDYEERFRN 98
           LK  GYDVI   L      +                AR+  +++     ++ D    F  
Sbjct: 1   LKEQGYDVIA-YLANIGQDEDFDA------------ARKKAESLGAKKIFIEDLRAAFVE 47

Query: 99  AVIVPFA-------SSYAAGET-PLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144
             I P           Y  G +   PC+   +       + + +  GA  ++ G
Sbjct: 48  EFIWPAVQANAVYEDRYLLGTSIARPCIARRQ-------VEIAKSEGAQYVSHG 94


>gi|296138640|ref|YP_003645883.1| GMP synthase, large subunit [Tsukamurella paurometabola DSM 20162]
 gi|296026774|gb|ADG77544.1| GMP synthase, large subunit [Tsukamurella paurometabola DSM 20162]
          Length = 519

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYDVIGVT 51
           +  +SGGVDS+V AAL++R  G  +  V 
Sbjct: 221 ICGLSGGVDSAVAAALVQRAIGDRLTCVF 249


>gi|315231096|ref|YP_004071532.1| ATPase [Thermococcus barophilus MP]
 gi|315184124|gb|ADT84309.1| ATPase [Thermococcus barophilus MP]
          Length = 246

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54
          D D+ P + ++ VA S G DS+    +L+  G+DV+ V ++L
Sbjct: 49 DFDRAPINEKIAVAFSAGSDSTATVKILRWTGFDVVPVMVKL 90


>gi|192290590|ref|YP_001991195.1| NAD synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192284339|gb|ACF00720.1| NAD+ synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 587

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G D V GV L                A   + DA R+ 
Sbjct: 296 VLLGISGGIDSALCAAIAVDALGADKVRGVML-----------PFRYTAQISLDDAGRLA 344

Query: 81  DTINVSHYVF 90
             +   + V 
Sbjct: 345 SALGFGYEVL 354


>gi|153806186|ref|ZP_01958854.1| hypothetical protein BACCAC_00441 [Bacteroides caccae ATCC 43185]
 gi|149130863|gb|EDM22069.1| hypothetical protein BACCAC_00441 [Bacteroides caccae ATCC 43185]
          Length = 555

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 42/212 (19%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------GQDVYDA 76
           V +SGG+DSSV++A+ K+  Y       +   +  AS                  D+  A
Sbjct: 232 VLLSGGLDSSVISAIAKK--YAA-----KRIETDGASDAWWPQLHSFAIGLKGAPDLIKA 284

Query: 77  RRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPC---VDCNRTVK 125
           R V + I   H+  +Y  +        VI  F  +Y        TP+     V  +  +K
Sbjct: 285 REVAEYIGTVHHEINYTVQEGLDAIRDVI-YFIETYDVTTVRASTPMYLLARVIKSMGIK 343

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA------ 179
                    ++    L        + +  +  ++   +     L  ++S   +       
Sbjct: 344 MVLSGEGADEVFGGYLYFHKAPTPQAFHEETVRKLSKLHMYDCLRANKSLSAWGVEGRVP 403

Query: 180 -TTQQQLCDL--------RFPLGDMKKESVRD 202
              ++ L             P  +++K  VR+
Sbjct: 404 FLDKEFLDVAMTLNPKAKMCPGKNIEKRIVRE 435


>gi|83649265|ref|YP_437700.1| PP-loop superfamily ATPase [Hahella chejuensis KCTC 2396]
 gi|110816229|sp|Q2S7U9|QUEC_HAHCH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|83637308|gb|ABC33275.1| predicted PP-loop superfamily ATPase [Hahella chejuensis KCTC
          2396]
          Length = 231

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 12/69 (17%)

Query: 24 VVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           VA+ SGG+DS  +   L ++G +V  ++   +N  +   ++  C        AR+VC++
Sbjct: 13 AVAIFSGGMDSFTLLNELVQEGKEVFALS---FNYGQRHSKELEC--------ARQVCES 61

Query: 83 INVSHYVFD 91
          +N++H + D
Sbjct: 62 LNIAHKIID 70


>gi|296110067|ref|YP_003617016.1| asparagine synthase (glutamine-hydrolyzing) [Methanocaldococcus
           infernus ME]
 gi|295434881|gb|ADG14052.1| asparagine synthase (glutamine-hydrolyzing) [Methanocaldococcus
           infernus ME]
          Length = 495

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV +  SGG+DSS+VAAL  +   +V     +LY+               D+  ++ + D
Sbjct: 246 RVAIICSGGLDSSLVAALSVKYNRNV-----KLYSVGLEGSE--------DLKYSQMLAD 292

Query: 82  TINVSHYV-FDYEERFRNAVIV 102
            + V   V    E+ F   +  
Sbjct: 293 HLGVELKVKVIEEDEFEEYLFK 314


>gi|303287891|ref|XP_003063234.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455066|gb|EEH52370.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 546

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           D  V+ A+SGGVDS+V A L+ + 
Sbjct: 239 DAHVICALSGGVDSAVAATLVHKA 262


>gi|196230245|ref|ZP_03129108.1| Argininosuccinate synthase [Chthoniobacter flavus Ellin428]
 gi|196225842|gb|EDY20349.1| Argininosuccinate synthase [Chthoniobacter flavus Ellin428]
          Length = 429

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           M++VVA SGG+D+SV+   LK     +++        +    + +      + +      
Sbjct: 1   MKIVVAYSGGLDTSVLLTWLKETYSAEIVAFC-----ADVGQEEELDGLEAKALRTGASK 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLSV 132
           C       Y+ D  E F    I P           Y  G +    +   R V       +
Sbjct: 56  C-------YIDDLREEFARDFIFPMFQAGAIYEGQYYLGTSIARPLIAKRMV------EI 102

Query: 133 TRQLGADVLATG 144
            R   AD +A G
Sbjct: 103 ARAEKADAVAHG 114


>gi|167759430|ref|ZP_02431557.1| hypothetical protein CLOSCI_01777 [Clostridium scindens ATCC 35704]
 gi|167662987|gb|EDS07117.1| hypothetical protein CLOSCI_01777 [Clostridium scindens ATCC 35704]
          Length = 408

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK +  Y+VI                  C  G+++     
Sbjct: 4   KVVLAYSGGLD--TTAIIPWLKENFDYEVICC-------------CVDCGQGEELDGLEE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQL 136
                     Y+ D  + F +  +VP   ++A  E                 L+ V R+ 
Sbjct: 49  RAKLSGASKLYIEDIVDDFCDNYVVPCVQAHAVYENKYLLGTSMARPAIAKKLVEVARKE 108

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 109 GASAICHG 116


>gi|126699394|ref|YP_001088291.1| argininosuccinate synthase [Clostridium difficile 630]
 gi|254975422|ref|ZP_05271894.1| argininosuccinate synthase [Clostridium difficile QCD-66c26]
 gi|255092809|ref|ZP_05322287.1| argininosuccinate synthase [Clostridium difficile CIP 107932]
 gi|255306812|ref|ZP_05350983.1| argininosuccinate synthase [Clostridium difficile ATCC 43255]
 gi|255314551|ref|ZP_05356134.1| argininosuccinate synthase [Clostridium difficile QCD-76w55]
 gi|255517226|ref|ZP_05384902.1| argininosuccinate synthase [Clostridium difficile QCD-97b34]
 gi|255650332|ref|ZP_05397234.1| argininosuccinate synthase [Clostridium difficile QCD-37x79]
 gi|260683445|ref|YP_003214730.1| argininosuccinate synthase [Clostridium difficile CD196]
 gi|260687041|ref|YP_003218174.1| argininosuccinate synthase [Clostridium difficile R20291]
 gi|119361264|sp|Q186Z6|ASSY_CLOD6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|115250831|emb|CAJ68655.1| Argininosuccinate synthase (Citrulline--aspartate ligase)
           [Clostridium difficile]
 gi|260209608|emb|CBA63266.1| argininosuccinate synthase [Clostridium difficile CD196]
 gi|260213057|emb|CBE04420.1| argininosuccinate synthase [Clostridium difficile R20291]
          Length = 399

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 13/125 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S++   LK             Y         G+      + D      
Sbjct: 4   KVVLAYSGGLDTSIIIPWLKE-----------NYEDIDVIAVCGNVGQEDKMEDVYEKAL 52

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQLGAD 139
                  YV D  E F    I     + A  E          R +    L+ V  + GA 
Sbjct: 53  QSGASKAYVDDISEEFVTETIFKAVKAEAKYEGKYLLGTSLARPIIAKKLVEVAHKEGAK 112

Query: 140 VLATG 144
            +  G
Sbjct: 113 YICHG 117


>gi|150399906|ref|YP_001323673.1| hypothetical protein Mevan_1163 [Methanococcus vannielii SB]
 gi|150012609|gb|ABR55061.1| ExsB family protein [Methanococcus vannielii SB]
          Length = 200

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+  V  SGG DSS+ A +L   GY++  +T+                       AR   
Sbjct: 4  MKAHVLFSGGKDSSLSAIILHNLGYEIQLITVNF-------------GVMDSYLHARETA 50

Query: 81 DTINVSHYV 89
          + I   H V
Sbjct: 51 NVIGFPHEV 59


>gi|117927016|ref|YP_867633.1| argininosuccinate synthase [Magnetococcus sp. MC-1]
 gi|166989393|sp|A0LE34|ASSY_MAGSM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|117610772|gb|ABK46227.1| argininosuccinate synthase [Magnetococcus sp. MC-1]
          Length = 407

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 41/202 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VV+A SGG+D+S++   L+ + Y             +           +++  AR   +
Sbjct: 7   KVVLAYSGGLDTSIILKWLQDE-YQC-----------EVVAFCADLGQAEELEPARAKAE 54

Query: 82  TINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
              V   Y+ D +E F    + P    Y A                  L      LG   
Sbjct: 55  KFGVKEIYIDDLKEEFVRDFVFPM---YRANT----------------LYEGVYHLG-TS 94

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC---DLRFPL--GDM 195
           +A     + ++ + +    + +         DQ  F        L     +  P    D+
Sbjct: 95  IARPLIAKRQIEIANATGAQAVSHGATGKGNDQVRF--ELGYYALRPDIRVIAPWREWDL 152

Query: 196 KKESVR-DLAREMGLDIADKSD 216
                    A + G+ +     
Sbjct: 153 TSRDKLFAYAEKHGIPVPTDKR 174


>gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537]
          Length = 442

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 40/210 (19%)

Query: 22  RVVVAMSGGVDSSVVA--ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V+VA+SGGVDS VV   AL+K     V  +                    Q   DA  V
Sbjct: 17  KVIVAVSGGVDS-VVLLDALIKTQ-PQVEFI----------VAHVNYHLRPQSDNDAHFV 64

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
            + I   ++V    +     +                     R  ++     +  +   +
Sbjct: 65  AE-IAKKYHVV-LRKVDWQGIDQGSVEE------------AARDFRYCFFEELANEYATN 110

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF---PLGDMK 196
            +   H+   +            + R   L    S        +Q+        PL    
Sbjct: 111 TILVAHHANDQAE-----TILLKLVRGGKL----SQLSGMQPTRQVSKTVQIVRPLLPFS 161

Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQG 226
           K+ ++  A++  L+  + S + D  +  + 
Sbjct: 162 KQRIKLYAQQHRLEWCEDSTNADSAYTPRN 191


>gi|237749968|ref|ZP_04580448.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374379|gb|EEO24770.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 295

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 20/132 (15%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYD 75
            +  ++++ +SGG DS     LL       I   ++ +   K            G +   
Sbjct: 65  KEGDKILLGLSGGKDS----MLLA-----TIFAYMKKHAPFKFEFLAMTIDYGRGGEYEY 115

Query: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               C  +N+ +   +  + F+         ++    T   C  C+R ++  +L S+  +
Sbjct: 116 IFEYCKKLNIPYE-LNRTQIFK------ILENHKKEGTIY-CSFCSR-MRRGELYSMALE 166

Query: 136 LGADVLATGHYI 147
            G + +A  H++
Sbjct: 167 RGFNKIALAHHL 178


>gi|182417115|ref|ZP_02948491.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           butyricum 5521]
 gi|237669147|ref|ZP_04529131.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182379048|gb|EDT76553.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           butyricum 5521]
 gi|237657495|gb|EEP55051.1| thiamine biosynthesis/tRNA modification protein ThiI [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 385

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 45/191 (23%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           ++ +SGG+DS V   L+ + G ++  V    Y+S   +  +            + +   +
Sbjct: 179 MLMLSGGIDSPVAGYLMAKRGVELNCVY---YHSHPYTSERAK-------DKVKELARIL 228

Query: 84  -----NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 ++ Y+  + +  +  +I                    R         +  +   
Sbjct: 229 SQYTEKINLYIVPFTDI-QMEIIDKCRED--------ELTIIMRRFMMRVACKLAEKYNI 279

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKK 197
           D + TG  I        DG                       +        F PL    K
Sbjct: 280 DSVCTGESIGQVASQTMDGLI--------------------VSDDCADRPAFRPLIATDK 319

Query: 198 ESVRDLAREMG 208
             + ++AR++G
Sbjct: 320 TDIMEIARKIG 330


>gi|15643345|ref|NP_228389.1| hypothetical protein TM0579 [Thermotoga maritima MSB8]
 gi|8928511|sp|Q9WZ48|TILS_THEMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4981097|gb|AAD35664.1|AE001733_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 414

 Score = 41.3 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 28/192 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +   V+VA+SGG+DS  +  +L++         L++  +      +    + +D     R
Sbjct: 4   EGEHVLVAVSGGIDSMTLLYVLRK-----FSPLLKIKITAAHLDHRIRESSRRDREFVER 58

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
           +C   N+            + V VP      +G+T        R V++  L    +++GA
Sbjct: 59  ICRQWNIPVET--------SEVDVPSLWK-DSGKTLEEIA---REVRYDFLKRTAKKVGA 106

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
             +A  H+    L           + R           L   + ++   +R P    K+ 
Sbjct: 107 SKIALAHHKNDLLE-----TVVHRLIRGTGPL-----GLACISPKREEFIR-PFLVFKRS 155

Query: 199 SVRDLAREMGLD 210
            + + AR+  + 
Sbjct: 156 EIEEYARKNNVP 167


>gi|290561615|gb|ADD38207.1| Probable NH3-dependent NAD+ synthetase [Lepeophtheirus salmonis]
          Length = 257

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 14  LDKNPKDMRV---VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70
           L K   + RV   VV +SGG+DS+V + L    G  VI + L ++       R  +  A 
Sbjct: 14  LQKYAHESRVNGFVVGISGGIDSAVTSTLCSLTGMKVICLNLPIHQVPAQVSRSDNHIAW 73

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102
                  +      +  +V +    F  A   
Sbjct: 74  LKEKYGEK------IDSHVVNLTPTFDTACKD 99


>gi|254526367|ref|ZP_05138419.1| argininosuccinate synthase [Prochlorococcus marinus str. MIT 9202]
 gi|221537791|gb|EEE40244.1| argininosuccinate synthase [Prochlorococcus marinus str. MIT 9202]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGGVD+SV    LK++           Y   +          G+D+   R+  
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKKE-----------YGISEVITFVADLGQGEDLELIRQKA 53

Query: 81  DTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
                S  +  +    F      P   + A      P      R +   +L+++ R+  A
Sbjct: 54  LNSGASQSILGNLVNSFVERYAFPAIRANALYLDKYPLSTALARPLIAENLVNIAREFSA 113

Query: 139 DVLATG 144
           D +A G
Sbjct: 114 DAVAHG 119


>gi|158522502|ref|YP_001530372.1| argininosuccinate synthase [Desulfococcus oleovorans Hxd3]
 gi|158511328|gb|ABW68295.1| Argininosuccinate synthase [Desulfococcus oleovorans Hxd3]
          Length = 399

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+SV+   L    +D   +T         S   G       + D  R  
Sbjct: 5   KKVVLAYSGGLDTSVILKWLIET-HDCEVITF--------SADIGQEEELDYIDDKARAT 55

Query: 81  DTINVSHYVFDYEERF-RNAVIVPFAS------SYAAGETPLPCVDCNRTVKFSDLLSVT 133
               V  Y+ D +E F +  V   F +       Y  G +    +   R +       + 
Sbjct: 56  GATGV--YIDDLKEEFVKEYVFPAFRANAIYEGQYLLGTSLARPLIAKRQI------EIA 107

Query: 134 RQLGADVLATG 144
              GAD ++ G
Sbjct: 108 VAEGADAVSHG 118


>gi|317483995|ref|ZP_07942931.1| hypothetical protein HMPREF0179_00281 [Bilophila wadsworthia 3_1_6]
 gi|316924784|gb|EFV45934.1| hypothetical protein HMPREF0179_00281 [Bilophila wadsworthia 3_1_6]
          Length = 228

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 61/202 (30%), Gaps = 42/202 (20%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           RV+V  SGG DS+V   L  R    +  V ++L         + +C           V  
Sbjct: 20  RVLVFYSGGKDSAVTLDLCARYFKRIQPVFMRL---GPILSFQRACLDW--------VER 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140
              V   +  +          P  + +    T          + F D+ +  R + G   
Sbjct: 69  RYRVPVMIVPH----------PMLAEWLRYGTFREYDFDVPIISFLDVYTYARSKSGVWW 118

Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
           +A G  I        D   RR M +                  +     FPL    K  V
Sbjct: 119 IAAGERI-------ADSIVRRAMIKGD----------GGVVNPKRGRF-FPLAHWSKSDV 160

Query: 201 RDLAREMGLDIADKSDSQDICF 222
               R   L +A   ++Q + F
Sbjct: 161 YAYIRHHRLKVA--PETQHLGF 180


>gi|308446824|ref|XP_003087270.1| hypothetical protein CRE_21709 [Caenorhabditis remanei]
 gi|308258149|gb|EFP02102.1| hypothetical protein CRE_21709 [Caenorhabditis remanei]
          Length = 199

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQNVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPRK 62

Query: 70 GQDVYDARR 78
           ++    + 
Sbjct: 63 AENYGAVKA 71


>gi|307731306|ref|YP_003908530.1| PP-loop domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307585841|gb|ADN59239.1| PP-loop domain protein [Burkholderia sp. CCGE1003]
          Length = 324

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRDG---YDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS          L+      +D++ V L      +      
Sbjct: 48  DFNMIENGDKVMVCLSGGKDS-YAMLDILMRLRERAPIDFDIVAVNL-----DQKQPGFP 101

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + +         +++  ++ + ++ +   ++         G+T   C  C+R ++
Sbjct: 102 EHVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LR 145

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L  V  +LGA  +A GH+
Sbjct: 146 RGILYRVAGELGATKIALGHH 166


>gi|323527653|ref|YP_004229806.1| PP-loop domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323384655|gb|ADX56746.1| PP-loop domain protein [Burkholderia sp. CCGE1001]
          Length = 324

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRDG---YDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS          L+      +D++ V L      +      
Sbjct: 48  DFNMIENGDKVMVCLSGGKDS-YAMLDILMRLRERAPIDFDIVAVNL-----DQKQPGFP 101

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + +         +++  ++ + ++ +   ++         G+T   C  C+R ++
Sbjct: 102 EHVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LR 145

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L  V  +LGA  +A GH+
Sbjct: 146 RGILYRVAGELGATKIALGHH 166


>gi|260590123|ref|ZP_05856036.1| argininosuccinate synthase [Blautia hansenii DSM 20583]
 gi|260539635|gb|EEX20204.1| argininosuccinate synthase [Blautia hansenii DSM 20583]
          Length = 423

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +V++A SGG+D    A +  LK +  Y+VI   +        +  +GS   G +   A  
Sbjct: 19  KVILAYSGGLD--TTALIPWLKENFDYEVICCCI--------NCGQGSELDGLEERAALS 68

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
               +    Y+ D  + F +  IVP           Y  G +        R      L+ 
Sbjct: 69  GASKL----YIEDIVDEFCDDYIVPCVQAGAVYENKYLLGTSMA------RPPIAKKLVE 118

Query: 132 VTRQLGADVLATG 144
           + R+ GA  +  G
Sbjct: 119 IARKEGAVAICHG 131


>gi|269797565|ref|YP_003311465.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
 gi|269094194|gb|ACZ24185.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
          Length = 332

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 25/134 (18%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKR---DGYDV--IGVTLQLYNSRKASKRKGSCCAGQD 72
           P++ R++VA SGG DS  +  LL+      + V  +GV   + +     + K      + 
Sbjct: 21  PENCRILVACSGGSDSMALLHLLQDIATHRHTVYELGV--AIVDHCIRPESKDEVLWLRT 78

Query: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
             D       + +  Y          AV        +     L      R V++  L  +
Sbjct: 79  QVDV------LGLPFYT---------AVFD--VPKLSQA-QKLSEETIGRQVRYQWLTDI 120

Query: 133 TRQLGADVLATGHY 146
            +  G D +A  H+
Sbjct: 121 AQSEGYDYIAVAHH 134


>gi|39935055|ref|NP_947331.1| NAD synthetase [Rhodopseudomonas palustris CGA009]
 gi|39648906|emb|CAE27427.1| NH3-dependent NAD synthetase [Rhodopseudomonas palustris CGA009]
          Length = 584

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           V++ +SGG+DS++ AA+     G D V GV L                A   + DA R+ 
Sbjct: 295 VLLGISGGIDSALCAAIAVDALGADKVRGVML-----------PFRYTAQISLDDAGRLA 343

Query: 81  DTINVSHYVF 90
             +   + V 
Sbjct: 344 SALGFGYEVL 353


>gi|312377717|gb|EFR24478.1| hypothetical protein AND_10897 [Anopheles darlingi]
          Length = 357

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 20/132 (15%)

Query: 22  RVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +V +A SGG DS+V+A ++K   + Y+  G+ L L +  +     G      D    + V
Sbjct: 38  KVAIAASGGKDSTVLAHVMKVLNERYN-YGLNLVLLSIDE-----GITGYRDDSL--KTV 89

Query: 80  C---DTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
               D   +   +  Y+E +     +    +          C  C    +   L    R 
Sbjct: 90  AQNRDDYGMPLRILSYQELYGWT--MDRIVAEIGRSNN---CTFCGVFRR-QALDRGARL 143

Query: 136 LGADVLATGHYI 147
           +  D +ATGH  
Sbjct: 144 MEVDCVATGHNA 155


>gi|289193095|ref|YP_003459036.1| Queuosine synthesis-like protein [Methanocaldococcus sp. FS406-22]
 gi|288939545|gb|ADC70300.1| Queuosine synthesis-like protein [Methanocaldococcus sp. FS406-22]
          Length = 294

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 19/125 (15%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV  SGG DSS   AL K  G           N                     ++   
Sbjct: 37  IVVMASGGKDSSTAIALAKDLG----------LNIEYLIHFYHRWSWDVSKKMVEKLSKK 86

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
            N+    +D  +                 +    C  C   +K    + + ++ G  ++ 
Sbjct: 87  FNIPVIYYDITDE--------LLKRTKGAKGSSICRICKNIMK-DKAVDIAKEKGIRIIM 137

Query: 143 TGHYI 147
           TG   
Sbjct: 138 TGDSA 142


>gi|148643088|ref|YP_001273601.1| ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|222445325|ref|ZP_03607840.1| hypothetical protein METSMIALI_00953 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350114|ref|ZP_05975531.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
 gi|148552105|gb|ABQ87233.1| predicted ATPase, PP-loop family [Methanobrevibacter smithii ATCC
           35061]
 gi|222434890|gb|EEE42055.1| hypothetical protein METSMIALI_00953 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860900|gb|EFC93198.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
          Length = 288

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 28/150 (18%)

Query: 7   TRLNSL--DLDKNPKDMRVVVAMSGGVDSSVVAALLKR-DGY---DVIGVTLQLYNSRKA 60
           TR+N+L  D +   +   + VA+SGG DS +    LK    Y   D++ V         +
Sbjct: 15  TRINNLIHDYNLINEHELIAVALSGGKDSVLTLHALKNYQNYLDFDLVAV---------S 65

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPC 117
                       +  A    + ++V      ++       + +   F S+       +PC
Sbjct: 66  VDEGIEGYRQHGIDAAIDNAEKLDVKLVQKSFKIEEGFALDDIYSGFKSAC------IPC 119

Query: 118 VDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
               R +    L      LGAD +ATGH +
Sbjct: 120 GVFRRNI----LNKTAYDLGADKIATGHNL 145


>gi|17547066|ref|NP_520468.1| NAD synthetase [Ralstonia solanacearum GMI1000]
 gi|17429367|emb|CAD16054.1| probable nh3-dependent nad+ synthetase signal peptide protein
           [Ralstonia solanacearum GMI1000]
          Length = 546

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 24  VVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           ++ +SGGVDS++V A+     G D V  V +                A     DAR +  
Sbjct: 293 IIGLSGGVDSALVLAIAVDALGADRVRAVMM-----------PSRYTADISWLDARDMAA 341

Query: 82  TINVSH 87
            + V +
Sbjct: 342 RLGVRY 347


>gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
 gi|254764825|sp|C0R4S1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
          Length = 431

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 55/255 (21%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY-DARRVCD 81
           V VA+SGGVDS V+  L            +  +  +       +      +  ++++  D
Sbjct: 21  VAVAVSGGVDSIVLLHL------------MTNWAKKNKLSLPTALTVNHGLRPESQKEAD 68

Query: 82  TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
                 +V  Y +         F  ++             R  ++  L    +      L
Sbjct: 69  ------FVVSYAKELGAK--ESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYL 120

Query: 142 ATGHYIRSRLYVGDDGKRRRIMCR-----PMDLER--DQSYFLFATTQQQLCDLRF-PLG 193
              H+         D +    + R      +D     D   FL            F PL 
Sbjct: 121 LVAHH--------KDDQAETFLLRLERGSGVDGLSSMDYKSFLNGIY-------IFRPLL 165

Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253
           +  +  +   A+   L   +   + D+      KY   + R     +   +I+     + 
Sbjct: 166 NFSRSEIEKYAKLHRLKWIEDRSNYDL------KYRRTLYRNLLKASDNQEILTERICLT 219

Query: 254 GRH-----NGIINYT 263
             H       +++YT
Sbjct: 220 ALHMKRAAKALMHYT 234


>gi|67920546|ref|ZP_00514066.1| NAD+ synthase [Crocosphaera watsonii WH 8501]
 gi|67858030|gb|EAM53269.1| NAD+ synthase [Crocosphaera watsonii WH 8501]
          Length = 562

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 13/71 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           + ++ +SGG+DSS+VAA+     G + V+G+ +                +   + D   +
Sbjct: 306 KAILGLSGGIDSSLVAAIAVEALGKENVLGILM-----------PSPYSSSHSISDGEAL 354

Query: 80  CDTINVSHYVF 90
            + + ++ +  
Sbjct: 355 VNNLGINSHTL 365


>gi|271499583|ref|YP_003332608.1| thiamine biosynthesis/tRNA modification protein ThiI [Dickeya
           dadantii Ech586]
 gi|270343138|gb|ACZ75903.1| thiamine biosynthesis/tRNA modification protein ThiI [Dickeya
           dadantii Ech586]
          Length = 482

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 57/189 (30%), Gaps = 39/189 (20%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G           R+V   
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNL---GGAAHEIG----------VRQVAHY 226

Query: 83  INVSH---YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           +       +   +       V+         G+  +      + +       +  + G  
Sbjct: 227 LWNRFGSSHRVRFVAIDFEPVVGEILEKVDDGQMGVVL----KRMMVRAASRIAERYGVQ 282

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            L TG  +      G    +     R +D   D               +  PL    KE 
Sbjct: 283 ALVTGEAL------GQVSSQTLTNLRLIDNASD-------------TLILRPLISHDKEH 323

Query: 200 VRDLAREMG 208
           +  LARE+G
Sbjct: 324 IIRLARELG 332


>gi|197287052|ref|YP_002152924.1| argininosuccinate synthase [Proteus mirabilis HI4320]
 gi|227354700|ref|ZP_03839119.1| argininosuccinate synthase [Proteus mirabilis ATCC 29906]
 gi|194684539|emb|CAR46342.1| argininosuccinate synthase [Proteus mirabilis HI4320]
 gi|227165210|gb|EEI50035.1| argininosuccinate synthase [Proteus mirabilis ATCC 29906]
          Length = 403

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYD---VIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            ++V+A SGG+D+S +   LK   YD   V+            S+        + +    
Sbjct: 6   KKIVLAYSGGLDTSAIIPWLKEH-YDNCEVVAFV----ADVGQSREDLEGVEQKALASGA 60

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
             C       YV D  E F    + P          SY  G +    V     V      
Sbjct: 61  SEC-------YVVDLREEFIKDYVYPVLKTGALYEGSYLLGTSMARPVIAKAQV------ 107

Query: 131 SVTRQLGADVLATG 144
            +  +LGAD LA G
Sbjct: 108 ELALKLGADALAHG 121


>gi|195154724|ref|XP_002018269.1| GL16852 [Drosophila persimilis]
 gi|226711420|sp|B4GHY8|CTU1_DROPE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194114065|gb|EDW36108.1| GL16852 [Drosophila persimilis]
          Length = 343

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 20/135 (14%)

Query: 19  KDMRVVVAMSGGVDSSVVAA---LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           +  +V VA SGG DS+V+A    LL    +D  G+ L L +  +      +      +  
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVMKLLNER-HD-YGLELVLLSIDEG----ITGYRDDSLET 102

Query: 76  ARRVCDTINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132
            ++  D   +   +  YEE +    + ++         G +   C  C    +   L   
Sbjct: 103 VKQNRDDYKMPLKILSYEELYGWTMDRIVS------QIGRS-NNCTFCGVFRR-QALDRG 154

Query: 133 TRQLGADVLATGHYI 147
            R L  D +ATGH  
Sbjct: 155 ARLLCVDSIATGHNA 169


>gi|78211944|ref|YP_380723.1| hypothetical protein Syncc9605_0392 [Synechococcus sp. CC9605]
 gi|78196403|gb|ABB34168.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 275

 Score = 41.3 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 55/198 (27%)

Query: 25  VAMSGGVDSSVVAALLKRDGYD----VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           VA SGGVDS++VAA+      D    V GV+  L              A   + +AR   
Sbjct: 31  VAYSGGVDSTLVAAMAYEAKGDAALAVTGVSPAL--------------APHLLREARNQA 76

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK-FSDLLSVTRQLGAD 139
             I ++H                     A  E   P    N   + F+    +   L   
Sbjct: 77  SWIGIAH------------------RECATAELNDPDYSSNPVDRCFACKRELHHHLQPI 118

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--K 197
             A G  +       DD    R                      +   +R PL ++   K
Sbjct: 119 AAAAGDALVIDGVNLDDLGDHRP----------------GIDAAREAGVRSPLAELSIDK 162

Query: 198 ESVRDLAREMGLDIADKS 215
            ++R L+R +G    DK 
Sbjct: 163 AAIRALSRALGFPWWDKP 180


>gi|331004931|ref|ZP_08328344.1| NAD synthetase [gamma proteobacterium IMCC1989]
 gi|330421255|gb|EGG95508.1| NAD synthetase [gamma proteobacterium IMCC1989]
          Length = 547

 Score = 41.3 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 15/70 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL-QLYNSRKASKRKGSCCAGQDVYDAR 77
            +VV+ +SGG+DS++  A+     G D V  + +  LY S  +              DA 
Sbjct: 288 QKVVLGLSGGIDSALTLAIAVDALGADKVTAIMMPFLYTSELSK------------EDAA 335

Query: 78  RVCDTINVSH 87
                + V +
Sbjct: 336 EQAKRLGVQY 345


>gi|225567860|ref|ZP_03776885.1| hypothetical protein CLOHYLEM_03933 [Clostridium hylemonae DSM
           15053]
 gi|225163338|gb|EEG75957.1| hypothetical protein CLOHYLEM_03933 [Clostridium hylemonae DSM
           15053]
          Length = 406

 Score = 41.3 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK +  Y+VI                  C  G+++     
Sbjct: 4   KVVLAYSGGLD--TTAIIPWLKENFDYEVICC-------------CVDCGQGEELDGLEE 48

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQL 136
                     Y+ D  + F +  +VP   ++A  E                 L+ + R+ 
Sbjct: 49  RAKLSGASKLYIEDIVDDFCDNYVVPCVQAHAVYENKYLLGTSMARPAIAKKLVEIARKE 108

Query: 137 GADVLATG 144
           GA  +  G
Sbjct: 109 GATAICHG 116


>gi|110597146|ref|ZP_01385435.1| Asparagine synthase, glutamine-hydrolyzing [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341337|gb|EAT59802.1| Asparagine synthase, glutamine-hydrolyzing [Chlorobium ferrooxidans
           DSM 13031]
          Length = 636

 Score = 41.3 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 27  MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86
           +SGGVDSS V AL++      +  T  +                     A  V   +   
Sbjct: 266 LSGGVDSSTVVALMQAQSRRPV-QTFTIGFEEAGFDESPH---------ALAVARHLGTD 315

Query: 87  HY 88
           H+
Sbjct: 316 HH 317


>gi|77460453|ref|YP_349960.1| hypothetical protein Pfl01_4232 [Pseudomonas fluorescens Pf0-1]
 gi|123603637|sp|Q3K8D5|TTCA_PSEPF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|77384456|gb|ABA75969.1| hypothetical protein Pfl01_4232 [Pseudomonas fluorescens Pf0-1]
          Length = 274

 Score = 41.3 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRD-----GYDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS       L+         ++++ V +           + 
Sbjct: 25  DFNMIEDGDKVMVCLSGGKDS-YTMLDVLMHLQKVAPIKFEIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + + +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KELGIEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|134117071|ref|XP_772762.1| hypothetical protein CNBK1360 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255380|gb|EAL18115.1| hypothetical protein CNBK1360 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 544

 Score = 41.3 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L+       IG      + ++    K +          D 
Sbjct: 230 EKGQVIGAVSGGVDSTVAAKLMHEA----IGDRFHAIMVDNGVLRKDEAKKVHKMLTVD- 284

Query: 77  RRVCDTINVSHYVFDYEERF 96
                 + V+  V D  E F
Sbjct: 285 ------LGVNLTVVDASELF 298


>gi|91216289|ref|ZP_01253256.1| asparagine synthetase B [Psychroflexus torquis ATCC 700755]
 gi|91185427|gb|EAS71803.1| asparagine synthetase B [Psychroflexus torquis ATCC 700755]
          Length = 524

 Score = 41.3 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 25  VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARRVCDTI 83
             +SGG+DSS+VA +L R          +L    K  +       G  D+  A+ V D I
Sbjct: 223 CLLSGGLDSSLVAGILAR----------KLKEKGKQLETFSIGLEGSPDIVAAKIVADHI 272

Query: 84  N-VSHYVF----DYEERFRNAVIVPFASSY 108
             + H +     D+ +   + V      SY
Sbjct: 273 GSIHHSIVCTEQDFLDELEHTV--YMLGSY 300


>gi|302694583|ref|XP_003036970.1| hypothetical protein SCHCODRAFT_48271 [Schizophyllum commune H4-8]
 gi|300110667|gb|EFJ02068.1| hypothetical protein SCHCODRAFT_48271 [Schizophyllum commune H4-8]
          Length = 354

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  RV +  SGG DS+V+A +LK   + YD  G+ L L +  +             +   
Sbjct: 50  RGDRVAIGASGGKDSTVLAYVLKTLNERYD-YGLDLFLLSIDEG----IMGYRDDSLETV 104

Query: 77  RRVCDTINVSHYVFDYEERF-RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
           +R     ++   +  Y+E +     +    S          C  C    +   L      
Sbjct: 105 KRNQQQYDMPLKILSYDELYGWT--MDRIVSQVGK---KNNCTFCGVFRR-QALDRGAAM 158

Query: 136 LGADVLATGHYI 147
           L  D + TGH  
Sbjct: 159 LHVDHIVTGHNA 170


>gi|229166829|ref|ZP_04294577.1| Amine oxidase [Bacillus cereus AH621]
 gi|228616632|gb|EEK73709.1| Amine oxidase [Bacillus cereus AH621]
          Length = 480

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 7/35 (20%)

Query: 17 NPKDMRVVV---AMSGGVDSSVVAALLKRDGYDVI 48
          NPK  R+ V    +SG     V A+LLK  G++V 
Sbjct: 23 NPKPKRITVAGAGISG----LVAASLLKEAGHEVT 53


>gi|218691536|ref|YP_002399748.1| putative oxidoreductase, Zn-dependent and NAD(P)-binding
           [Escherichia coli ED1a]
 gi|218429100|emb|CAR10044.2| putative oxidoreductase, Zn-dependent and NAD(P)-binding
           [Escherichia coli ED1a]
          Length = 324

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 17  NPKDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGV 50
            P+D  VVV   SGGV S+   ALL + GY V+ V
Sbjct: 144 RPQDGEVVVTGASGGVGST-AVALLHKLGYQVVAV 177


>gi|58260564|ref|XP_567692.1| GMP synthase (glutamine-hydrolyzing) [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57229773|gb|AAW46175.1| GMP synthase (glutamine-hydrolyzing), putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 544

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIG--VTLQLYNSRKASKRKGSCCAGQDVYDA 76
           +  +V+ A+SGGVDS+V A L+       IG      + ++    K +          D 
Sbjct: 230 EKGQVIGAVSGGVDSTVAAKLMHEA----IGDRFHAIMVDNGVLRKDEAKKVHKMLTVD- 284

Query: 77  RRVCDTINVSHYVFDYEERF 96
                 + V+  V D  E F
Sbjct: 285 ------LGVNLTVVDASELF 298


>gi|20092908|ref|NP_618983.1| hypothetical protein MA4115 [Methanosarcina acetivorans C2A]
 gi|19918217|gb|AAM07463.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 200

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+V V  SGG DSS+ A LL    ++V             +   G    G+    A +  
Sbjct: 1  MKVSVLFSGGKDSSLSALLL-EPFFEV----------ELVTCNFGLLPTGEI---AAKTA 46

Query: 81 DTINVSHYVFDYEER 95
          + ++  H V   +  
Sbjct: 47 EELHFPHRVLSLDRE 61


>gi|119357731|ref|YP_912375.1| exsB protein [Chlorobium phaeobacteroides DSM 266]
 gi|167016422|sp|A1BHS4|QUEC_CHLPD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|119355080|gb|ABL65951.1| exsB protein [Chlorobium phaeobacteroides DSM 266]
          Length = 226

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
          M+ VV +SGG+DS V  A+    G+++  +              G     +++   R + 
Sbjct: 1  MKAVVLLSGGMDSLVTTAIANAQGFELAAMH----------VNYGQRTWHKELEAFRLIA 50

Query: 81 DTINV 85
          D   +
Sbjct: 51 DHYAI 55


>gi|256811268|ref|YP_003128637.1| Queuosine synthesis-like protein [Methanocaldococcus fervens AG86]
 gi|256794468|gb|ACV25137.1| Queuosine synthesis-like protein [Methanocaldococcus fervens AG86]
          Length = 260

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 51/206 (24%)

Query: 8   RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67
               + +DK P     VVA SGGVDSS    + K           Q++N +  S      
Sbjct: 53  EFYKISIDKKPDA---VVAFSGGVDSSTSTIIAK-----------QIFNVKAVSCYSEYI 98

Query: 68  CAGQDVYDARRVCDTINVSHYVFD--YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
              +   + +++   I V     D   +E + + +   +           PC  C++ V+
Sbjct: 99  MTEEMKKNVKKLVKKIGVDLEFIDINLKEVYEDTIKGRYH----------PCGRCHKIVE 148

Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
            S +++  ++   + +  G  +                     L +D   F F       
Sbjct: 149 -SAVMNYAKENNVEFVIFGDLLAFGYLA---------------LYKDNEIFRFNLP---- 188

Query: 186 CDLRFPLGDMKKESVRDLAREMGLDI 211
               F L    K   R + +  G+++
Sbjct: 189 --SFFAL---TKNEERTILKNNGIEL 209


>gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599]
 gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC
           100599]
          Length = 475

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 26/131 (19%)

Query: 23  VVVAMSGGVDSSVVAALL----KRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           VVV +SGG DS+ +  +L    K+  Y   +  V L  +  R    R+       D   A
Sbjct: 21  VVVGISGGNDSTALLHILASLNKQYQYQWKLHAVHL-NHGFRGEEARQ-------DALYA 72

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
             +C  + V  ++                 +Y   +T L   + +R +++     V    
Sbjct: 73  EELCRELGVVFHL-----------FEYDVPAY-MEKTGLGGQEASRDIRYRLYREVGLAQ 120

Query: 137 GADVLATGHYI 147
           GA  LA  H+ 
Sbjct: 121 GATKLALAHHA 131


>gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
 gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
          Length = 419

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 47/147 (31%), Gaps = 23/147 (15%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
           M V  A  L    L   PK   + VA+SGG DS  +  LL         VT         
Sbjct: 1   MTVDPARLLADGLLPDPPK--TIGVAVSGGSDSLALLHLLHD-----FAVTHSCTLHVAT 53

Query: 61  SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
                   AG +       C ++ + H V  ++    +           +G         
Sbjct: 54  VDHGLRREAGAEAAMVADTCRSLGLDHEVLHWQG--WDR----------SGNLQNEA--- 98

Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYI 147
            R  ++  L    R+   DV+A GH  
Sbjct: 99  -RKARYQLLADWGRRRQLDVIALGHTA 124


>gi|221135468|ref|ZP_03561771.1| asparagine synthetase B [Glaciecola sp. HTCC2999]
          Length = 387

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 41/183 (22%)

Query: 24  VVAMSGGVDSS----VVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--------G 70
            V +SGG+DSS    V A  + KR                  S                 
Sbjct: 61  AVLLSGGLDSSLVSAVAAQYVAKR------------VEDGDQSDAWWPRLHSFAVGLEGA 108

Query: 71  QDVYDARRVCDTINVSHYVFDYEERFR----NAVIVPFASSYA----AGETPLPCVDCNR 122
            D+  A++V D I   H+   +  +        VI  F  +Y        TP+      R
Sbjct: 109 PDLKAAQKVADMIGTVHHEIHFTIQEGLDAIRDVI-YFLETYDTTTIRAATPM--YLMTR 165

Query: 123 TVK-FSDLL----SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177
            +K     +        ++    L       ++ +  +  ++   +        ++S   
Sbjct: 166 KIKAMGIKMVLSGEGADEIFGGYLYFHKAPNAKEFHEETVRKLERLHMFDCARANKSTSA 225

Query: 178 FAT 180
           +  
Sbjct: 226 WGV 228


>gi|15668871|ref|NP_247674.1| hypothetical protein MJ_0690 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833535|sp|Q58102|Y690_METJA RecName: Full=Uncharacterized protein MJ0690
 gi|1591405|gb|AAB98685.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 200

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           K M V V  SGG DSS+ A +LK+ GY+   +T+                       A  
Sbjct: 2   KLMDVHVLFSGGKDSSLSAVILKKLGYNPHLITINF-------------GVIPSYKLAEE 48

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118
               +   H V          ++   A      + P P +
Sbjct: 49  TAKILGFKHKVI----TLDRKIVEKAADMIIEHKYPGPAI 84


>gi|110639392|ref|YP_679602.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282073|gb|ABG60259.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 450

 Score = 41.3 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 37/204 (18%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            + ++++ +SGG+DS V+  L  + G+   GV    + S + S+  G      D+     
Sbjct: 17  SNEKILLTVSGGIDSIVLFDLFVKAGFS-FGVAHCNF-SLRGSESDGDEQFVSDL----- 69

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
                 +S +V              F +S  A    L      R ++++    + RQ G 
Sbjct: 70  -AIKQGISIHV------------KRFDTSAFASNNALSIQMAARELRYTWFKELARQYGY 116

Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ---QQLCDLRFPLGDM 195
             +AT H +   +           + R   +       L    +   + +  L F     
Sbjct: 117 AAIATAHQLNDIIE-----TTLINLSRGTGIA-----GLHGIPEKNGEIIRPLLF--AGR 164

Query: 196 KKESVRDLAREMGLDIADKSDSQD 219
            K  +R  A E  L   + S + +
Sbjct: 165 DK--IRSYAEENNLKWREDSSNME 186


>gi|301061943|ref|ZP_07202672.1| conserved hypothetical protein TIGR00268 [delta proteobacterium
           NaphS2]
 gi|300443960|gb|EFK07996.1| conserved hypothetical protein TIGR00268 [delta proteobacterium
           NaphS2]
          Length = 270

 Score = 40.9 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 81/290 (27%), Gaps = 81/290 (27%)

Query: 19  KDMR-VVVAMSGGVDS----------------SVVAALLKRDGYDVIGVTLQLYNSRKAS 61
           K MR V+VA SGGVDS                +V A         V  +           
Sbjct: 12  KRMRSVLVAFSGGVDSALLLAAAHEALGENVLAVTA---------VSPIH---------- 52

Query: 62  KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121
                    ++  DA        + H +   +E      +V           P  C  C 
Sbjct: 53  -------PLRERADAAAFTKERGIPHLLIPSDEMNLPEFVV---------NNPDRCYHCK 96

Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181
           + +    L  + R+ G       H+      V D    R  +   M+             
Sbjct: 97  KALC-KTLNELARENGI------HHAVHGANVDDLDDFRPGLRAAMEEG-----VEAPLM 144

Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241
             +L           K  +R LA+ MGL   D+  S   C   +  Y   V +    +  
Sbjct: 145 DNRL----------NKTGIRRLAKAMGLPQWDRP-SM-ACLASRLPYGSAVTKEKLKMIE 192

Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291
             +    +  +      +     G+   + V   E   V+  D     +I
Sbjct: 193 TAEAFLADKGL----KTLRVRHHGELARIEVGDSERELVL-KDPVRKDII 237


>gi|254571793|ref|XP_002493006.1| Protein required for thiolation of the uridine at the wobble
           position of Gln, Lys, and Glu tRNAs [Pichia pastoris
           GS115]
 gi|238032804|emb|CAY70827.1| Protein required for thiolation of the uridine at the wobble
           position of Gln, Lys, and Glu tRNAs [Pichia pastoris
           GS115]
 gi|328352982|emb|CCA39380.1| hypothetical protein PP7435_Chr3-0418 [Pichia pastoris CBS 7435]
          Length = 362

 Score = 40.9 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLK--RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
           K  RV +  SGG DS+V+A +LK   + YD  G+ L L +  +             +   
Sbjct: 53  KGERVAIGASGGKDSTVLAHILKTLNERYD-YGLELVLLSIDEG----IVGYRDDSLATV 107

Query: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
           +R  +   +   +  Y+E +  +         A       C  C   ++   L     +L
Sbjct: 108 KRNKEQYQMPLEIVSYKELYSWS----MDEIVACAGIRSSCTYCG-VLRRQALDRGAARL 162

Query: 137 GADVLATGHYI 147
           G   + TGH  
Sbjct: 163 GIAHVVTGHNA 173


>gi|57167686|ref|ZP_00366826.1| argininosuccinate synthase [Campylobacter coli RM2228]
 gi|305433193|ref|ZP_07402349.1| argininosuccinate synthase [Campylobacter coli JV20]
 gi|57020808|gb|EAL57472.1| argininosuccinate synthase [Campylobacter coli RM2228]
 gi|304443894|gb|EFM36551.1| argininosuccinate synthase [Campylobacter coli JV20]
          Length = 406

 Score = 40.9 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +VV+A SGG+D+S++   L+ + Y    VT                  G+++  AR+  
Sbjct: 6   KKVVLAYSGGLDTSIILKWLQDE-YKCEVVTF-----------TADIGQGEELEPARKKA 53

Query: 81  DTINVSHYVF---DYEERFRNAVIVPFAS-------SYAAG 111
            ++ +        D  E F    + P           Y  G
Sbjct: 54  LSLGIKEENVFIKDLREEFVKDYVFPMFRANTIYEGEYLLG 94


>gi|26249835|ref|NP_755875.1| hypothetical protein c4009 [Escherichia coli CFT073]
 gi|110643488|ref|YP_671218.1| zinc-binding dehydrogenase [Escherichia coli 536]
 gi|191173818|ref|ZP_03035339.1| quinone oxidoreductase, YhdH family [Escherichia coli F11]
 gi|227887968|ref|ZP_04005773.1| alcohol dehydrogenase [Escherichia coli 83972]
 gi|300979734|ref|ZP_07174684.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS
           200-1]
 gi|300991038|ref|ZP_07179459.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS 45-1]
 gi|301047904|ref|ZP_07194951.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS
           185-1]
 gi|306816412|ref|ZP_07450544.1| zinc-binding dehydrogenase [Escherichia coli NC101]
 gi|331659532|ref|ZP_08360474.1| protein YhdH [Escherichia coli TA206]
 gi|26110263|gb|AAN82449.1|AE016767_209 Protein yhdH [Escherichia coli CFT073]
 gi|110345080|gb|ABG71317.1| probable zinc-binding dehydrogenase [Escherichia coli 536]
 gi|190905868|gb|EDV65486.1| quinone oxidoreductase, YhdH family [Escherichia coli F11]
 gi|222034962|emb|CAP77705.1| Protein yhdH [Escherichia coli LF82]
 gi|227835364|gb|EEJ45830.1| alcohol dehydrogenase [Escherichia coli 83972]
 gi|300300247|gb|EFJ56632.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS
           185-1]
 gi|300307952|gb|EFJ62472.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS
           200-1]
 gi|300406959|gb|EFJ90497.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS 45-1]
 gi|305849977|gb|EFM50436.1| zinc-binding dehydrogenase [Escherichia coli NC101]
 gi|307555339|gb|ADN48114.1| quinone oxidoreductase [Escherichia coli ABU 83972]
 gi|312947802|gb|ADR28629.1| zinc-binding dehydrogenase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315294792|gb|EFU54135.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS
           153-1]
 gi|315300904|gb|EFU60124.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS 16-3]
 gi|324009069|gb|EGB78288.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS 57-2]
 gi|324015848|gb|EGB85067.1| quinone oxidoreductase, YhdH/YhfP family [Escherichia coli MS 60-1]
 gi|331054114|gb|EGI26143.1| protein YhdH [Escherichia coli TA206]
          Length = 324

 Score = 40.9 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 17  NPKDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGV 50
            P+D  VVV   SGGV S+   ALL + GY V+ V
Sbjct: 144 RPQDGEVVVTGASGGVGST-AVALLHKLGYQVVAV 177


>gi|294669343|ref|ZP_06734422.1| NAD+ synthetase [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291308753|gb|EFE49996.1| NAD+ synthetase [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 263

 Score = 40.9 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 47/194 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83
           +V +SGG+DS+VV+AL  R G DV+ + +                  + +  A++     
Sbjct: 27  IVGISGGIDSAVVSALAARTGLDVLLLEM------------PIRQQAEQIDRAQQ----- 69

Query: 84  NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA- 142
               ++ D + RF N        S     TP           F+          A+  A 
Sbjct: 70  ----HIADLQSRFAN------VRSLRVDLTPA----------FNCFADTVDVNEAEYPAK 109

Query: 143 ----TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY---FLFATTQQQLCDLRFPLGDM 195
                    R R+       +   +       + + +   F        +     P+ D+
Sbjct: 110 QLALANSRARLRMLTLYYYGQINGLLVTGTGNKIEDFGVGFFTKYGDGGVD--ISPIADL 167

Query: 196 KKESVRDLAREMGL 209
            K  V  LA  + +
Sbjct: 168 TKTQVYRLAESLDI 181


>gi|147676532|ref|YP_001210747.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146272629|dbj|BAF58378.1| predicted ATPase [Pelotomaculum thermopropionicum SI]
          Length = 473

 Score = 40.9 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 24/151 (15%)

Query: 1   MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSV----VAALLKRDGYDVIGVTLQLYN 56
           M +    R N        +  +V+VA+SGG DS V       LLK +      + + L+ 
Sbjct: 1   MSLLHKVRENICRHRMVERGCKVLVAVSGGPDS-VALLHALYLLKEE------LEISLHV 53

Query: 57  SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116
           +      +G+    + ++    +     +              V      +Y   ++ L 
Sbjct: 54  AHLNHMFRGAESEAEALF-VADMARRYGLP-----------ATVEARDVPAYQK-QSGLS 100

Query: 117 CVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147
                R V+F        + GA  +A  H+ 
Sbjct: 101 AQAAAREVRFRFFSEAAGKAGASRVALAHHA 131


>gi|330834635|ref|YP_004409363.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566774|gb|AEB94879.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 321

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 23  VVVAMSGGVDSSVVAALLK----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           V VA+SGG DS+ +  +LK    R+G+D++G+ + L          G+  +      A +
Sbjct: 54  VAVAVSGGKDSTTLLHILKGLSERNGFDLVGINIDL------GIDNGTKYSALSTELAVK 107

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
             +  +V + V + +  +   +      +      P+ C  C   VK   L      +GA
Sbjct: 108 NFELTHVRYKVIELKREYGFGI----DEAKLKARRPV-CSTCG-LVKRYVLEEAAESVGA 161

Query: 139 DVLATGHYIR 148
           +VLATGH + 
Sbjct: 162 NVLATGHNLN 171


>gi|325121410|gb|ADY80933.1| argininosuccinate synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 452

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 9  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 67

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 68 AEQYGAVKA 76


>gi|322507305|gb|ADX02759.1| argG [Acinetobacter baumannii 1656-2]
          Length = 452

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 9  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 67

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 68 AEQYGAVKA 76


>gi|299771036|ref|YP_003733062.1| argininosuccinate synthase [Acinetobacter sp. DR1]
 gi|298701124|gb|ADI91689.1| argininosuccinate synthase [Acinetobacter sp. DR1]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|293608823|ref|ZP_06691126.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829396|gb|EFF87758.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|262372873|ref|ZP_06066152.1| argininosuccinate synthase [Acinetobacter junii SH205]
 gi|262312898|gb|EEY93983.1| argininosuccinate synthase [Acinetobacter junii SH205]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|262279763|ref|ZP_06057548.1| argininosuccinate synthase [Acinetobacter calcoaceticus RUH2202]
 gi|262260114|gb|EEY78847.1| argininosuccinate synthase [Acinetobacter calcoaceticus RUH2202]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|260550761|ref|ZP_05824969.1| argininosuccinate synthase [Acinetobacter sp. RUH2624]
 gi|260406267|gb|EEW99751.1| argininosuccinate synthase [Acinetobacter sp. RUH2624]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|239503318|ref|ZP_04662628.1| argininosuccinate synthase [Acinetobacter baumannii AB900]
 gi|260557374|ref|ZP_05829589.1| argininosuccinate synthase [Acinetobacter baumannii ATCC 19606]
 gi|260409000|gb|EEX02303.1| argininosuccinate synthase [Acinetobacter baumannii ATCC 19606]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|254168734|ref|ZP_04875576.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|289596819|ref|YP_003483515.1| PP-loop domain protein [Aciduliprofundum boonei T469]
 gi|197622360|gb|EDY34933.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|289534606|gb|ADD08953.1| PP-loop domain protein [Aciduliprofundum boonei T469]
          Length = 308

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 23/134 (17%)

Query: 18  PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
            K  ++++A+SGG DS +    + +       +  + +   +          G    +  
Sbjct: 45  KKGDKILIAVSGGKDSMLTMYQMHK-------IFGK-WRDLELVAVTVDEGIGDFRRNCA 96

Query: 78  RVCD----TINVSHYVFDYEERF---RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           +V +     + + H V  ++E      + V               PC  C    +   L 
Sbjct: 97  KVANIYARELGIEHEVITFKEYLGITTDDVAR--VDKELK-----PCTYCGVFRR-KVLN 148

Query: 131 SVTRQLGADVLATG 144
              +++GA+ L  G
Sbjct: 149 MYAKEIGANYLILG 162


>gi|184157425|ref|YP_001845764.1| argininosuccinate synthase [Acinetobacter baumannii ACICU]
 gi|183209019|gb|ACC56417.1| Argininosuccinate synthase [Acinetobacter baumannii ACICU]
 gi|323517324|gb|ADX91705.1| argininosuccinate synthase [Acinetobacter baumannii TCDC-AB0715]
          Length = 452

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 9  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 67

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 68 AEQYGAVKA 76


>gi|169633088|ref|YP_001706824.1| argininosuccinate synthase [Acinetobacter baumannii SDF]
 gi|169151880|emb|CAP00724.1| argininosuccinate synthetase [Acinetobacter baumannii]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|169796658|ref|YP_001714451.1| argininosuccinate synthase [Acinetobacter baumannii AYE]
 gi|213156114|ref|YP_002318534.1| argininosuccinate synthase [Acinetobacter baumannii AB0057]
 gi|215484150|ref|YP_002326375.1| argininosuccinate synthase [Acinetobacter baumannii AB307-0294]
 gi|294839530|ref|ZP_06784213.1| argininosuccinate synthase [Acinetobacter sp. 6013113]
 gi|294842307|ref|ZP_06786990.1| argininosuccinate synthase [Acinetobacter sp. 6014059]
 gi|294857531|ref|ZP_06795300.1| argininosuccinate synthase [Acinetobacter sp. 6013150]
 gi|301347760|ref|ZP_07228501.1| argininosuccinate synthase [Acinetobacter baumannii AB056]
 gi|301512249|ref|ZP_07237486.1| argininosuccinate synthase [Acinetobacter baumannii AB058]
 gi|301596671|ref|ZP_07241679.1| argininosuccinate synthase [Acinetobacter baumannii AB059]
 gi|169149585|emb|CAM87474.1| argininosuccinate synthetase [Acinetobacter baumannii AYE]
 gi|213055274|gb|ACJ40176.1| argininosuccinate synthase [Acinetobacter baumannii AB0057]
 gi|213988022|gb|ACJ58321.1| argininosuccinate synthase [Acinetobacter baumannii AB307-0294]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|50084343|ref|YP_045853.1| argininosuccinate synthase [Acinetobacter sp. ADP1]
 gi|49530319|emb|CAG68031.1| argininosuccinate synthetase [Acinetobacter sp. ADP1]
          Length = 446

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69
          N+  L   P   +V +A SGG+D+S     +K+ G +    T                  
Sbjct: 4  NATILQHVPVGKKVGIAFSGGLDTSAALLWMKQKGAEPYAYT-ANLGQPDEDDYDAIPKK 62

Query: 70 GQDVYDARR 78
           +     + 
Sbjct: 63 AEQYGAVKA 71


>gi|329769331|ref|ZP_08260747.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
 gi|328839134|gb|EGF88719.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
          Length = 439

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 36/200 (18%)

Query: 17  NPKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72
             K+ ++ +A+SGGVDS V+  LL    K    +++ V    +  R+ S  +      + 
Sbjct: 7   WNKEDKIAIALSGGVDSIVLFHLLVTEYKDSYKELV-VFHINHGLREESYEEAG-FVEKF 64

Query: 73  VYDARRVCDTINVSHY--VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
           V D        +V  Y    +  +  R+      +    A           R +++    
Sbjct: 65  VKD-------FDVKFYKEELNMSDLERD---SHTSEEMLA-----------RELRYQAFN 103

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
            + +  G   L T H+   ++           +     +  D S  +    +    ++  
Sbjct: 104 KMAKLEGVTKLLTAHHKNDQVE-----NILMRLLTGRSI--DHSLAICEEIEMAGLNIYR 156

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL +  K  + + A+E  L 
Sbjct: 157 PLLNSLKAELEEYAKEKNLH 176


>gi|323136917|ref|ZP_08071997.1| argininosuccinate synthase [Methylocystis sp. ATCC 49242]
 gi|322397678|gb|EFY00200.1| argininosuccinate synthase [Methylocystis sp. ATCC 49242]
          Length = 415

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +VV+A SGG+D+S++   L+   G +V+  T                  G+++  AR  
Sbjct: 12  KKVVLAYSGGLDTSIILKWLQTTYGAEVVTFT-------------ADLGQGEELGPAREK 58

Query: 80  CDTINVS---HYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFSDL 129
              + V     ++ D  E F    + P   +       Y  G +    +   + +     
Sbjct: 59  ALLLGVKPENIFIEDLREEFVRDYVFPMFRANAQYEGLYLLGTSIARPLIAKKQI----- 113

Query: 130 LSVTRQLGADVLATG 144
             + R++GAD +  G
Sbjct: 114 -EIARKMGADAVCHG 127


>gi|291619394|ref|YP_003522136.1| ArgG [Pantoea ananatis LMG 20103]
 gi|291154424|gb|ADD79008.1| ArgG [Pantoea ananatis LMG 20103]
 gi|327395717|dbj|BAK13139.1| argininosuccinate synthase ArgG [Pantoea ananatis AJ13355]
          Length = 405

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK +  G +V+     +   R             D+    +
Sbjct: 7   KKIVLAYSGGLDTSAIIPWLKENYGGCEVVAFVADIGQER------------SDLEGVEK 54

Query: 79  VCDTINV-SHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLL 130
                     +V D  E F +  + P          +Y  G +    +     V      
Sbjct: 55  KALQSGASECHVVDLREEFISDYVYPVLQTGALYEGTYLLGTSMARPIIAKAQV------ 108

Query: 131 SVTRQLGADVLATG 144
            +  ++GAD L  G
Sbjct: 109 ELALKVGADALCHG 122


>gi|268316165|ref|YP_003289884.1| thiamine biosynthesis/tRNA modification protein ThiI [Rhodothermus
           marinus DSM 4252]
 gi|262333699|gb|ACY47496.1| thiamine biosynthesis/tRNA modification protein ThiI [Rhodothermus
           marinus DSM 4252]
          Length = 500

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 66/220 (30%)

Query: 24  VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV---C 80
           +V +SGG DS+V A L  R G  V  +   L          G     + V    +V    
Sbjct: 187 LVLISGGFDSAVAAWLAMRRGVSVDYLFCNL----------GGKAYERAVLQVAKVLADA 236

Query: 81  DTINV--SHYVFDY-----------EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127
            +       Y  D+              +   V+      Y AGE               
Sbjct: 237 WSFGTRPRFYSVDFGPVVDEMRRHVRPAYWQVVLKRLM--YRAGE--------------- 279

Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
              +V R+  A  L TG  +      G    +     + ++          +        
Sbjct: 280 ---AVARRTEALALITGESL------GQVSSQTLKNLQAIEAGT-------SLP------ 317

Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227
           +  PL    KE + +LAR++G     +   ++ C +   +
Sbjct: 318 VLRPLLTYDKEEIINLARKIGTATLSER-VREYCALPPDR 356


>gi|145354938|ref|XP_001421731.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581969|gb|ABP00025.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 547

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRD 43
           D  V+ A+SGGVDS+V A L+ + 
Sbjct: 240 DAHVICALSGGVDSAVAATLVHKA 263


>gi|330960606|gb|EGH60866.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 274

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA--LLKRDG-----YDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS       LL         +D++ V +           + 
Sbjct: 25  DFNMIEDGDKVMVCLSGGKDS-YTLLDVLLHLQKVAPIRFDIVAVNM----------DQK 73

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + V  A      + V +++ + ++ +   V+         G+T   C  C+R ++
Sbjct: 74  QPGFPEHVLPAYL--KALGVEYHIVE-KDTYS--VVKELIPE---GKT--TCSLCSR-LR 122

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L +   ++GA  +A GH+
Sbjct: 123 RGTLYTFADEIGATKMALGHH 143


>gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
 gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
          Length = 480

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 27/189 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +VV +SGG DS  +   L     +     L++  +      +G     +D+   + +C  
Sbjct: 29  IVVGVSGGPDSLALLYYLLEKRAEKQ---LKIVVAHVDHMFRGDESH-EDLQFVQDLCKG 84

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
           + V                    S Y         V   R  +++ L  + ++  A  +A
Sbjct: 85  LGVICETIRVN-----------VSQYQQQYGMNAQVAA-RECRYAFLERIMKKYDARYVA 132

Query: 143 TGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
            GH+       GDD        + R     +  +             L  PL  + KE +
Sbjct: 133 LGHH-------GDDQVETILMRLVRGSTP-KGYAGIAVKRPFHN-GYLIRPLLGVTKEEI 183

Query: 201 RDLAREMGL 209
            +   E+ L
Sbjct: 184 VNYCNELNL 192


>gi|331002369|ref|ZP_08325887.1| argininosuccinate synthase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330410185|gb|EGG89619.1| argininosuccinate synthase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 410

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 30/133 (22%)

Query: 22  RVVVAMSGGVDSSVVAAL--LKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
           +VV+A SGG+D    A +  LK    YDVI   +   +  + ++  G     +       
Sbjct: 5   KVVLAYSGGLD--TTAIIPWLKEHFDYDVICCCI---DCGQGNELDGLEERAKLSG---- 55

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
             + +    Y+ D  + F +  I+P           Y  G +        R      L+ 
Sbjct: 56  -AEKL----YIIDMIDEFCDDYIIPCVQAGAVYENKYLLGTSMA------RPGIAKKLVE 104

Query: 132 VTRQLGADVLATG 144
           V R+  A  +  G
Sbjct: 105 VARKENAVAICHG 117


>gi|320539072|ref|ZP_08038743.1| argininosuccinate synthetase [Serratia symbiotica str. Tucson]
 gi|320030710|gb|EFW12718.1| argininosuccinate synthetase [Serratia symbiotica str. Tucson]
          Length = 406

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 26/133 (19%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD--GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
            ++V+A SGG+D+S +   LK +  G +V+     +   R   +        + +     
Sbjct: 7   KKIVLAYSGGLDTSAIIPWLKENHGGCEVVAFVADIGQERSDLEG----IEQKALQSGAS 62

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFAS-------SYAAGETPLPCVDCNRTVKFSDLLS 131
            C       YV D  E F    + P          SY  G +    +     V       
Sbjct: 63  EC-------YVVDLREEFIRDYVYPVLQTGALYEGSYLLGTSMARPIIAKAQV------E 109

Query: 132 VTRQLGADVLATG 144
           +  ++GAD L  G
Sbjct: 110 LALKVGADALCHG 122


>gi|254445125|ref|ZP_05058601.1| exsB protein [Verrucomicrobiae bacterium DG1235]
 gi|198259433|gb|EDY83741.1| exsB protein [Verrucomicrobiae bacterium DG1235]
          Length = 243

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V V  SGG+DS+V+   ++  G  + G           S   G     +++  A   C  
Sbjct: 13  VAV-YSGGMDSTVMLYRMRELGIAIKGA---------LSVNYGQ-KHSKELDAAAEFCRA 61

Query: 83  INVSHYVFDYEER---FRNAVIVPFASS-----YAAGETPLPCVDCNRTVKFSDLLSVTR 134
           + + H V D       F  + +   A       Y   +     V     +  S   S   
Sbjct: 62  LGIEHRVADLSGLQGIFGKSSLTSSAEEVPEGHYEEEQMKSTVVPNRNMILLSVATSWAI 121

Query: 135 QLGADVLAT 143
            LGA+ +A 
Sbjct: 122 SLGAEAVAY 130


>gi|189029590|sp|A1RJY8|QUEC_SHESW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|189029599|sp|A4Y6J4|QUEC_SHEPC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 240

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 63/197 (31%), Gaps = 36/197 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV  SGG DS+           +V G+T                   +++  A+ +  
Sbjct: 13  KAVVVFSGGQDSTTCLIQALTQYDEVHGITFDY-----------GQRHREEIEVAKSLAK 61

Query: 82  TINV-SHYVFD--------YEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            + + SH V D             R+A+ +           T +P     R + F  L  
Sbjct: 62  RLKITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVP----GRNILFLTLAG 117

Query: 132 -VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               QLGA+ + TG           D       CR  D  +     L     +QL  +  
Sbjct: 118 IYAYQLGAEAIITG-------VCETDFSGYPD-CR-NDFVKAMESALVQGMDKQL-KIIT 167

Query: 191 PLGDMKKESVRDLAREM 207
           PL  + K     LA + 
Sbjct: 168 PLMWLNKAQTWALADKY 184


>gi|99014555|emb|CAK22274.1| putative GMP synthase [Chenopodium rubrum]
          Length = 284

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D  V+ A+SGGVDS+V A L+ +     IG  L          R        D ++    
Sbjct: 198 DDHVICALSGGVDSTVAATLVHKA----IGDRLHCIFVDNGLLRYKERERVMDTFE---- 249

Query: 80  CDTINVSHYVFDYEERF 96
            + +++     D  E+F
Sbjct: 250 -EHLHLPVTCVDASEQF 265


>gi|71064847|ref|YP_263574.1| putative NH3-dependent (glutamine-hydrolyzing) NAD(+) synthetase
           [Psychrobacter arcticus 273-4]
 gi|71037832|gb|AAZ18140.1| putative NH3-dependent (glutamine-hydrolyzing) NAD(+) synthetase
           [Psychrobacter arcticus 273-4]
          Length = 567

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V +SGG+DS++   +     G D V  V +                +   + DA+   
Sbjct: 309 IIVGLSGGIDSALTLCIAVDALGADKVYAVMM-----------PYEYTSQISLEDAQAQA 357

Query: 81  DTINVSHYV 89
             +NVS+ V
Sbjct: 358 RRLNVSYTV 366


>gi|16126944|ref|NP_421508.1| hypothetical protein CC_2711 [Caulobacter crescentus CB15]
 gi|221235730|ref|YP_002518167.1| asparagine synthetase [Caulobacter crescentus NA1000]
 gi|13424298|gb|AAK24676.1| hypothetical protein CC_2711 [Caulobacter crescentus CB15]
 gi|220964903|gb|ACL96259.1| asparagine synthetase (glutamine-hydrolyzing) [Caulobacter
           crescentus NA1000]
          Length = 585

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 25/127 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           +++ +SGG+DS++VA+ L R    VI      +  R+  +R            A+R+ D 
Sbjct: 238 ILLEISGGLDSAIVASSLARCRAPVIAAFNAYWPQREGDERVW----------AQRIADH 287

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETP-----LPCVDCNRTVKFSDLLSVTRQLG 137
              +        R   AV        A    P      P +D        DL    R++G
Sbjct: 288 FGFTLIT---SRRDLMAVDAAMLDQTAGSARPGLNAQDPDLD-------RDLADHLRRVG 337

Query: 138 ADVLATG 144
           A  L TG
Sbjct: 338 AQALFTG 344


>gi|120598963|ref|YP_963537.1| queuosine biosynthesis protein QueC [Shewanella sp. W3-18-1]
 gi|146292952|ref|YP_001183376.1| queuosine biosynthesis protein QueC [Shewanella putrefaciens CN-32]
 gi|120559056|gb|ABM24983.1| exsB protein [Shewanella sp. W3-18-1]
 gi|145564642|gb|ABP75577.1| exsB protein [Shewanella putrefaciens CN-32]
 gi|319426519|gb|ADV54593.1| exsB protein [Shewanella putrefaciens 200]
          Length = 245

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 63/197 (31%), Gaps = 36/197 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           + VV  SGG DS+           +V G+T                   +++  A+ +  
Sbjct: 18  KAVVVFSGGQDSTTCLIQALTQYDEVHGITFDY-----------GQRHREEIEVAKSLAK 66

Query: 82  TINV-SHYVFD--------YEERFRNAV-IVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
            + + SH V D             R+A+ +           T +P     R + F  L  
Sbjct: 67  RLKITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVP----GRNILFLTLAG 122

Query: 132 -VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
               QLGA+ + TG           D       CR  D  +     L     +QL  +  
Sbjct: 123 IYAYQLGAEAIITG-------VCETDFSGYPD-CR-NDFVKAMESALVQGMDKQL-KIIT 172

Query: 191 PLGDMKKESVRDLAREM 207
           PL  + K     LA + 
Sbjct: 173 PLMWLNKAQTWALADKY 189


>gi|93005127|ref|YP_579564.1| NAD+ synthetase [Psychrobacter cryohalolentis K5]
 gi|92392805|gb|ABE74080.1| NAD+ synthetase [Psychrobacter cryohalolentis K5]
          Length = 567

 Score = 40.9 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           ++V +SGG+DS++   +     G D V  V +                +   + DA+   
Sbjct: 309 IIVGLSGGIDSALTLCIAVDALGADKVYAVMM-----------PYEYTSQISLEDAQAQA 357

Query: 81  DTINVSHYV 89
             +NVS+ V
Sbjct: 358 RRLNVSYTV 366


>gi|315924503|ref|ZP_07920724.1| argininosuccinate synthase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622207|gb|EFV02167.1| argininosuccinate synthase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 410

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 26/134 (19%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
           ++ +V++A SGG+D++ +   LK    YDVI V            ++ +    + +    
Sbjct: 3   ENKKVILAYSGGLDTTTIVPWLKETYNYDVICVC-----VDVGQGKETNGLEEKALKSGA 57

Query: 78  RVCDTINVSHYVFDYEERFRNAVIVPFA-------SSYAAGETPLPCVDCNRTVKFSDLL 130
             C       Y+ +  + F      P           Y  G +        R +    L+
Sbjct: 58  SKC-------YIVNVIDEFVEEYCWPALKADAVYEKKYLLGTSLA------RPLISKVLV 104

Query: 131 SVTRQLGADVLATG 144
               +  A+ +  G
Sbjct: 105 DYAHKEEAEAICHG 118


>gi|83593292|ref|YP_427044.1| ExsB [Rhodospirillum rubrum ATCC 11170]
 gi|110816255|sp|Q2RSY8|QUEC_RHORT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|83576206|gb|ABC22757.1| ExsB [Rhodospirillum rubrum ATCC 11170]
          Length = 241

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
          +  +P   R +V +SGG+DS+   A+ + +G+ V            A           ++
Sbjct: 1  MPHSPTQRRAIVLVSGGLDSTTTLAIAQAEGFTV-----------NALSFSYGQRHAVEL 49

Query: 74 YDARRVCDTINVSHYVF 90
            ARRV     V  +V 
Sbjct: 50 EAARRVTQAFAVERHVI 66


>gi|296157394|ref|ZP_06840229.1| PP-loop domain protein [Burkholderia sp. Ch1-1]
 gi|295892166|gb|EFG71949.1| PP-loop domain protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRD---GYDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS          L+      +D++ V L      +      
Sbjct: 63  DFNMIEDGDKVMVCLSGGKDS-YAMLEILMRLRERAPINFDIVAVNL-----DQKQPGFP 116

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + +         +++  ++ + ++ +   ++         G+T   C  C+R ++
Sbjct: 117 EHVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LR 160

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L  V  +LGA  +A GH+
Sbjct: 161 RGILYRVAGELGATKIALGHH 181


>gi|291544395|emb|CBL17504.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus sp. 18P13]
          Length = 276

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 24/130 (18%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79
           R+ V +SGG DS ++A L+++         LQ       +    +   G D    +++  
Sbjct: 42  RIAVCVSGGKDSMLLAKLMQQ---------LQRVRQNDFTLEFLTMDPGYDPAHTQQLLD 92

Query: 80  -CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
               + +   V      F   ++              PC  C   ++   L +  + LG 
Sbjct: 93  NAALLGIPVQV------FETNILRIVNKQAQH-----PCFLC-ARMRRGHLYAKAQALGC 140

Query: 139 DVLATGHYIR 148
           + +A GH+  
Sbjct: 141 NKIALGHHFN 150


>gi|209517341|ref|ZP_03266184.1| PP-loop domain protein [Burkholderia sp. H160]
 gi|209502224|gb|EEA02237.1| PP-loop domain protein [Burkholderia sp. H160]
          Length = 330

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRD---GYDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS          L+      +D++ V L      +      
Sbjct: 55  DFNMIEDGDKVMVCLSGGKDS-YAMLDILMRLRERAPINFDIVAVNL-----DQKQPGFP 108

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + +         +++  ++ + ++ +   ++         G+T   C  C+R ++
Sbjct: 109 EHVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LR 152

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L  V  +LGA  +A GH+
Sbjct: 153 RGILYRVAGELGATKIALGHH 173


>gi|115373156|ref|ZP_01460458.1| ExsB protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824375|ref|YP_003956733.1| queuosine biosynthesis protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369912|gb|EAU68845.1| ExsB protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397447|gb|ADO74906.1| Queuosine biosynthesis protein [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
           + VV +SGG+DS+   A+ K DG++ + +                     ++  AR+V 
Sbjct: 2  KKAVVLLSGGLDSTTCLAMAKADGFEPVCL-----------AIHYGQRHAVELERARQVA 50

Query: 81 DTIN 84
          +T+ 
Sbjct: 51 ETMG 54


>gi|91785571|ref|YP_560777.1| hypothetical protein Bxe_A0206 [Burkholderia xenovorans LB400]
 gi|123358392|sp|Q13T64|TTCA_BURXL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91689525|gb|ABE32725.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia xenovorans LB400]
          Length = 336

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 29/141 (20%)

Query: 13  DLDKNPKDMRVVVAMSGGVDSSVVAA----LLKRD---GYDVIGVTLQLYNSRKASKRKG 65
           D +      +V+V +SGG DS          L+      +D++ V L      +      
Sbjct: 60  DFNMIEDGDKVMVCLSGGKDS-YAMLEILMRLRERAPINFDIVAVNL-----DQKQPGFP 113

Query: 66  SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
                + +         +++  ++ + ++ +   ++         G+T   C  C+R ++
Sbjct: 114 EHVLPEYL-------KQLDIPFHIEN-QDTYS--IVKRLVPE---GKT--TCSLCSR-LR 157

Query: 126 FSDLLSVTRQLGADVLATGHY 146
              L  V  +LGA  +A GH+
Sbjct: 158 RGILYRVAGELGATKIALGHH 178


>gi|56476932|ref|YP_158521.1| ExsB protein [Aromatoleum aromaticum EbN1]
 gi|81357766|sp|Q5P4Z2|QUEC_AZOSE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|56312975|emb|CAI07620.1| similar to queC gene product; involved in queuosine biosynthesis
          [Aromatoleum aromaticum EbN1]
          Length = 226

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
          +  R +V +SGG+DS+   A+ +  G+D   +++                   ++  ARR
Sbjct: 3  EPKRAIVLLSGGLDSATCLAIARNAGFDCYALSIAY-----------GQRHTAELAAARR 51

Query: 79 VCDTINVSHYVF 90
          V  +++   +  
Sbjct: 52 VAQSLDAREHRL 63


>gi|145638947|ref|ZP_01794555.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittII]
 gi|145271919|gb|EDK11828.1| thiamine biosynthesis protein ThiI [Haemophilus influenzae PittII]
 gi|309750916|gb|ADO80900.1| Thiamine biosynthesis protein ThiI [Haemophilus influenzae R2866]
          Length = 485

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 44/229 (19%)

Query: 23  VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
           V+  +SGG DS V + +L R G  V      L     A+   G       ++  +R   +
Sbjct: 180 VLSLISGGFDSGVSSYMLIRRGSRVHYCFFNL---GGAAHEIGVKQMAYHIW--QRYSAS 234

Query: 83  INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
             V     ++       ++         G+  +      + +       V ++   + + 
Sbjct: 235 HKVRFIAINF-----EGIVGEILEKVDNGQMGVVL----KRMMVRAASKVAQRFNIEAIV 285

Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF-PLGDMKKESVR 201
           TG                      +     Q+        +    L   PL    KE + 
Sbjct: 286 TGE--------------------ALGQVSSQTLTNLRLIDEASGALVLRPLITHDKEQII 325

Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250
            +A+E+G    D + S         ++  V+ +     A+   IV   G
Sbjct: 326 AMAKEIG--TDDIAKSM-------PEFCGVISKNPTIKAVREKIVTEEG 365


>gi|268610931|ref|ZP_06144658.1| argininosuccinate synthase [Ruminococcus flavefaciens FD-1]
          Length = 411

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 26/137 (18%)

Query: 17  NPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
           N KD  +VV+A SGG+D+S++   LK             YN+ +     G    G ++  
Sbjct: 3   NKKDIKKVVLAYSGGLDTSIIIPWLKE-----------NYNNPEIIAVSGDVGQGTELDG 51

Query: 76  ARRVCDTINV-SHYVFDYEERFRNAVIVPFASS-------YAAGETPLPCVDCNRTVKFS 127
                         V D +E F    + P   +       Y  G +        R +   
Sbjct: 52  LEEKAIKTGASKLIVADLKEEFIQDYVYPTVQAGAIYENRYMLGTSFA------RPIIAK 105

Query: 128 DLLSVTRQLGADVLATG 144
            +  +  + GAD +  G
Sbjct: 106 RIAEIALEEGADAICHG 122


>gi|229520198|ref|ZP_04409625.1| alcohol dehydrogenase [Vibrio cholerae TM 11079-80]
 gi|229342792|gb|EEO07783.1| alcohol dehydrogenase [Vibrio cholerae TM 11079-80]
          Length = 326

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 12  LDLDKNPKDMRVVV-AMSGGVDSSVVAALLKRDGYDVIGVT 51
           +D D  P+D  ++V   SGGV S V   LL + GY V+ VT
Sbjct: 140 IDGDIKPEDGEILVTGASGGVGS-VAVTLLAQLGYKVVAVT 179


>gi|172087739|ref|YP_205328.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114]
 gi|171902329|gb|AAW86440.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114]
          Length = 456

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 15/76 (19%)

Query: 19 KDMRVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
          K   ++VA+SGGVDS V+  L     K    + + V              G      D  
Sbjct: 30 KKPHLIVALSGGVDSMVLLRLAGMYAKEKQLECMAVH----------VNHGLSLHANDWE 79

Query: 75 -DARRVCDTINVSHYV 89
                C  +++  Y+
Sbjct: 80 VSCASYCKELDIPLYI 95


>gi|167836662|ref|ZP_02463545.1| Asparagine synthase family protein [Burkholderia thailandensis
           MSMB43]
          Length = 506

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 23  VVVAMSGGVDSSVVAALLKRD-GYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           V  A+SGGVDSS  A  L++  G +  +  V L   +S          C  +D+  A RV
Sbjct: 152 VCAALSGGVDSSAGAIFLRKALGANAPLAAVHLFSTSSPD--------CYERDM--AARV 201

Query: 80  CDTINVSHYVFDY--EERFRNAVIV 102
            D+I  +    D      F   ++ 
Sbjct: 202 ADSIGAALICLDIDRHLPFSERIVQ 226


>gi|51038614|ref|YP_063260.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Borrelia garinii PBi]
 gi|81391517|sp|Q6ASN4|GUAA_BORGA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|51036287|gb|AAT93750.1| GMP synthase [Borrelia garinii PBi]
          Length = 528

 Score = 40.9 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 37/195 (18%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
            +V++ +SGG DS V A L+K+    ++I V +     RK   +K      +  YD    
Sbjct: 233 KKVILGLSGGTDSLVCALLIKKAIKENLICVFVNTGLLRKNEDKKI--LELKHQYD---- 286

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-----TR 134
              +N+ +   D  E+F N         Y    +     +  R +   + ++V       
Sbjct: 287 ---LNIKY--IDASEKFLN---------YLKNIS---DPEEKRKIIGKEFVNVFEKITLE 329

Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
               + LA G      +           +    +        +     +    L  PL +
Sbjct: 330 DQNIEYLAQGTIYSDVIESKSKNNASSKIKSHHN--------VGGLPDKMRLKLLEPLNE 381

Query: 195 MKKESVRDLAREMGL 209
             K+ +  +   +G+
Sbjct: 382 FFKDEIIQIGINLGI 396


>gi|304405283|ref|ZP_07386943.1| NAD+ synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304346162|gb|EFM11996.1| NAD+ synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 269

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 60/200 (30%), Gaps = 49/200 (24%)

Query: 24  VVAMSGGVDSSVVAALLKRD--------GYDVI--GVTLQLYNSRKASKRKGSCCAGQDV 73
           ++A+SGG+DS+V A L K+         G + I  GV                     D+
Sbjct: 43  LIAISGGIDSAVAAGLCKQATDELSAESGREYITLGVF-------------QPYTEQVDI 89

Query: 74  YDARRVCDTINVSHYVFDYEERFRNAV---IVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
            D+  V D   ++H V        + +   +     +             N   +   ++
Sbjct: 90  SDSYAVADAFKLTHRVETNIGETVDEIALEVEHSLKAIGISRHLSRGGKGNVKARTRMVM 149

Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
                   ++L  G    S    G   K         D   D                  
Sbjct: 150 QYAIAFDMNLLVVGTDHASEAITGFYTKW-------GDGAVD----------------IT 186

Query: 191 PLGDMKKESVRDLAREMGLD 210
           PL  + K  VR +A ++G+ 
Sbjct: 187 PLSSLNKRQVRQVAAKLGVP 206


>gi|291279332|ref|YP_003496167.1| ExsB family transcriptional regulator [Deferribacter
          desulfuricans SSM1]
 gi|290754034|dbj|BAI80411.1| transcriptional regulator, ExsB family [Deferribacter
          desulfuricans SSM1]
          Length = 237

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDAR 77
          + +V +SGG+DS V AA+ K  GY+   + L    Y  R  ++   +       YDA+
Sbjct: 3  KAIVLVSGGMDSCVTAAIAKDMGYE---LYLLHTNYGQRTENRELKAFYDIASYYDAK 57


>gi|229132800|ref|ZP_04261645.1| Amine oxidase [Bacillus cereus BDRD-ST196]
 gi|228650627|gb|EEL06617.1| Amine oxidase [Bacillus cereus BDRD-ST196]
          Length = 482

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 1  MVVSEATRLNSLDLDKNPKDMRVVV---AMSGGVDSSVVAALLKRDGYDVI 48
          + + E  ++    L K     R+ +    MSG     V A+LLK  G++V 
Sbjct: 5  LSMEEMLQIIHEGLAKTNNPKRITIAGAGMSG----LVAASLLKEAGHEVT 51


>gi|225848370|ref|YP_002728533.1| hypothetical protein SULAZ_0544 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643535|gb|ACN98585.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 409

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           +++V +  GVDS      LK D  +  +IG     Y+     + +          + +RV
Sbjct: 3   KILVHICCGVDSIYALRKLKEDYPNSKLIGYF---YDPNIHPQEE----FELRWIETKRV 55

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           CD + +     DYE       +  + +    GE    C  C+  ++      V + LG +
Sbjct: 56  CDQLGIECIKGDYELDKWMEAVKGYENEPERGE---RCTICH-DLRLEKSAQVAKDLGCN 111

Query: 140 VLAT 143
            + T
Sbjct: 112 KITT 115


>gi|167568866|ref|ZP_02361740.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           oklahomensis C6786]
          Length = 510

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 20  DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
           D+ + V  SGG+DS++V  L  R   DV  ++  L                 D+  A R 
Sbjct: 228 DLPICVMFSGGIDSAIVLQLAHRYHPDVTAISFGL-------------PGSNDIEIAHRY 274

Query: 80  CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
           C    + H ++ + ++     I                        + +       + + 
Sbjct: 275 CAENGIRHVIYTFTKQDLLDNIDDAVY-------------------YGEFFEKIDAIDST 315

Query: 140 VLATGHYIRSRL--YVGDDGKRRRIMCRPMDLERDQS-------YFLFATTQQQLCDL 188
           +   G+YI ++L   V   G+    +    DL +  +       Y L    +  L  +
Sbjct: 316 IAHFGYYIANKLGFKVALCGEGSDEIFGGYDLFKTHARPGALSLYRLNNLHRTDLQRV 373


>gi|90417120|ref|ZP_01225048.1| exsB protein [marine gamma proteobacterium HTCC2207]
 gi|90331136|gb|EAS46392.1| exsB protein [marine gamma proteobacterium HTCC2207]
          Length = 226

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDV 47
           + V+ +SGG+DS+ V A+ K  GYD 
Sbjct: 3  KKAVILVSGGLDSTTVVAMAKSQGYDC 29


>gi|71282550|ref|YP_269590.1| exsB protein [Colwellia psychrerythraea 34H]
 gi|110816200|sp|Q480C9|QUEC1_COLP3 RecName: Full=7-cyano-7-deazaguanine synthase 1; AltName:
           Full=7-cyano-7-carbaguanine synthase 1; AltName:
           Full=PreQ(0) synthase 1; AltName: Full=Queuosine
           biosynthesis protein queC 1
 gi|71148290|gb|AAZ28763.1| exsB protein [Colwellia psychrerythraea 34H]
          Length = 218

 Score = 40.9 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
           +VVV  SGG+DS  V    K+DG +V  ++   ++  +   ++  C        A  VC 
Sbjct: 4   KVVVIYSGGMDSFTVLNRAKKDGKEVFALS---FDYGQRHVKELEC--------ASIVCK 52

Query: 82  TINVSHYVFDYEERFR-------NAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
            + V+H V D     +          I      Y A       V     +  S  ++   
Sbjct: 53  ELAVNHKVIDISAINQLLAGSSLTDDIDIPEGHYEAESMKSTVVPNRNMILLSLAVAYAV 112

Query: 135 QLGADVLATG-HYIRSRLYVG 154
            +GA+ +  G H     +Y  
Sbjct: 113 SVGAEQVYYGAHSGDHAIYPD 133


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.312    0.164    0.535 

Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,601,998,969
Number of Sequences: 13984884
Number of extensions: 426207901
Number of successful extensions: 1186265
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 10020
Number of HSP's successfully gapped in prelim test: 5673
Number of HSP's that attempted gapping in prelim test: 1139352
Number of HSP's gapped (non-prelim): 19320
length of query: 408
length of database: 4,792,584,752
effective HSP length: 141
effective length of query: 267
effective length of database: 2,820,716,108
effective search space: 753131200836
effective search space used: 753131200836
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 83 (36.3 bits)